Query 001386
Match_columns 1088
No_of_seqs 920 out of 5132
Neff 10.7
Searched_HMMs 46136
Date Thu Mar 28 23:29:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001386.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001386hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 1.5E-70 3.2E-75 540.7 34.4 493 5-653 17-514 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 9.7E-63 2.1E-67 469.7 31.0 491 4-650 6-507 (508)
3 KOG0319 WD40-repeat-containing 100.0 2.5E-59 5.4E-64 496.0 48.8 577 340-1006 25-621 (775)
4 KOG0319 WD40-repeat-containing 100.0 3.6E-56 7.9E-61 472.0 44.7 585 297-963 24-621 (775)
5 KOG0318 WD40 repeat stress pro 100.0 6.1E-52 1.3E-56 422.4 61.8 573 340-1004 24-602 (603)
6 KOG0291 WD40-repeat-containing 100.0 2.7E-51 5.9E-56 434.7 62.8 571 297-1013 19-621 (893)
7 KOG0318 WD40 repeat stress pro 100.0 4.7E-50 1E-54 408.7 57.1 539 327-961 52-602 (603)
8 KOG0306 WD40-repeat-containing 100.0 1.9E-48 4.1E-53 413.0 54.0 581 336-1058 23-665 (888)
9 KOG0291 WD40-repeat-containing 100.0 9.3E-48 2E-52 407.9 57.7 560 287-1009 48-714 (893)
10 KOG0306 WD40-repeat-containing 100.0 2.4E-48 5.3E-53 412.1 48.9 506 334-965 65-668 (888)
11 KOG0271 Notchless-like WD40 re 100.0 9.3E-50 2E-54 390.2 29.9 367 392-910 111-479 (480)
12 KOG0271 Notchless-like WD40 re 100.0 5E-50 1.1E-54 392.1 27.9 333 324-714 105-479 (480)
13 KOG1408 WD40 repeat protein [F 100.0 2.1E-41 4.6E-46 356.1 45.6 608 337-1057 40-713 (1080)
14 KOG1408 WD40 repeat protein [F 100.0 1.1E-40 2.4E-45 350.6 40.6 539 328-1006 72-715 (1080)
15 KOG0273 Beta-transducin family 100.0 1.1E-40 2.3E-45 336.2 35.7 345 322-763 167-522 (524)
16 KOG0272 U4/U6 small nuclear ri 100.0 8.3E-42 1.8E-46 339.8 22.7 283 332-650 173-458 (459)
17 KOG1539 WD repeat protein [Gen 100.0 2.4E-37 5.1E-42 333.2 56.3 580 340-1056 39-647 (910)
18 KOG1063 RNA polymerase II elon 100.0 7.5E-38 1.6E-42 330.2 47.2 643 340-1057 20-763 (764)
19 KOG0279 G protein beta subunit 100.0 2.1E-39 4.5E-44 305.6 30.3 298 326-652 7-313 (315)
20 KOG0276 Vesicle coat complex C 100.0 4.8E-38 1E-42 326.9 43.3 480 328-961 7-490 (794)
21 KOG0272 U4/U6 small nuclear ri 100.0 1.7E-40 3.8E-45 330.4 22.4 285 394-714 173-458 (459)
22 KOG0286 G-protein beta subunit 100.0 1.2E-38 2.6E-43 302.1 32.4 294 326-650 47-343 (343)
23 KOG1063 RNA polymerase II elon 100.0 7.4E-38 1.6E-42 330.3 41.5 622 326-1004 46-763 (764)
24 KOG0263 Transcription initiati 100.0 1.6E-38 3.4E-43 342.8 34.5 278 319-611 363-652 (707)
25 KOG1539 WD repeat protein [Gen 100.0 3.2E-36 7E-41 324.5 49.7 554 331-961 73-648 (910)
26 KOG0286 G-protein beta subunit 100.0 4.8E-37 1E-41 291.3 31.3 287 391-714 50-343 (343)
27 KOG0292 Vesicle coat complex C 100.0 2.4E-35 5.2E-40 318.4 47.6 585 330-1008 5-598 (1202)
28 KOG0315 G-protein beta subunit 100.0 6.9E-37 1.5E-41 283.2 30.4 293 346-673 9-309 (311)
29 KOG0279 G protein beta subunit 100.0 1.3E-35 2.7E-40 280.1 32.2 297 731-1058 12-314 (315)
30 KOG0276 Vesicle coat complex C 100.0 1.8E-34 3.9E-39 300.4 43.6 459 392-996 9-483 (794)
31 KOG0295 WD40 repeat-containing 100.0 2.3E-36 5E-41 295.3 25.5 292 325-651 99-405 (406)
32 KOG2106 Uncharacterized conser 100.0 1.3E-32 2.8E-37 279.7 50.4 535 327-1003 59-625 (626)
33 KOG0296 Angio-associated migra 100.0 2.7E-34 5.8E-39 281.3 34.9 339 436-912 59-398 (399)
34 KOG0285 Pleiotropic regulator 100.0 3.2E-35 6.9E-40 285.9 26.1 301 318-654 135-441 (460)
35 KOG0315 G-protein beta subunit 100.0 3.8E-34 8.2E-39 265.1 31.7 295 500-891 11-309 (311)
36 KOG0296 Angio-associated migra 100.0 3.1E-34 6.7E-39 280.8 29.4 335 324-715 54-397 (399)
37 KOG2106 Uncharacterized conser 100.0 1.1E-31 2.3E-36 273.1 47.8 523 402-1056 71-625 (626)
38 KOG0265 U5 snRNP-specific prot 100.0 5.7E-34 1.2E-38 271.7 27.3 290 328-649 41-335 (338)
39 KOG0645 WD40 repeat protein [G 100.0 2.9E-33 6.2E-38 263.0 31.1 292 326-652 6-311 (312)
40 KOG0292 Vesicle coat complex C 100.0 4.3E-32 9.2E-37 293.4 44.1 499 392-1002 5-516 (1202)
41 KOG2048 WD40 repeat protein [G 100.0 2.8E-30 6.1E-35 273.2 56.3 550 396-1057 25-601 (691)
42 KOG0273 Beta-transducin family 100.0 1.4E-33 3.1E-38 284.9 29.9 279 335-652 236-523 (524)
43 KOG0316 Conserved WD40 repeat- 100.0 2.1E-33 4.5E-38 257.8 25.1 293 320-650 3-297 (307)
44 KOG0265 U5 snRNP-specific prot 100.0 3.7E-33 8E-38 266.2 26.6 287 391-712 42-334 (338)
45 KOG0266 WD40 repeat-containing 100.0 1.1E-32 2.3E-37 311.5 32.8 294 327-652 151-454 (456)
46 KOG0295 WD40 repeat-containing 100.0 2.6E-33 5.6E-38 274.1 23.5 285 392-714 104-404 (406)
47 KOG2048 WD40 repeat protein [G 100.0 1.1E-29 2.4E-34 268.7 52.1 501 441-1058 25-549 (691)
48 KOG0284 Polyadenylation factor 100.0 5.1E-34 1.1E-38 282.9 17.6 284 333-652 95-380 (464)
49 KOG0285 Pleiotropic regulator 100.0 1.5E-32 3.2E-37 267.4 27.0 295 391-765 146-440 (460)
50 KOG0282 mRNA splicing factor [ 100.0 6.8E-34 1.5E-38 288.7 17.7 296 321-650 201-503 (503)
51 KOG0293 WD40 repeat-containing 100.0 5.8E-33 1.3E-37 275.2 22.6 293 391-716 219-513 (519)
52 KOG0645 WD40 repeat protein [G 100.0 8.8E-31 1.9E-35 246.3 32.0 293 731-1057 11-311 (312)
53 KOG0263 Transcription initiati 100.0 2.5E-32 5.3E-37 295.1 23.6 247 395-654 377-651 (707)
54 cd00200 WD40 WD40 domain, foun 100.0 1.6E-30 3.4E-35 282.7 36.4 287 328-650 3-289 (289)
55 KOG0281 Beta-TrCP (transducin 100.0 1.1E-32 2.4E-37 266.9 15.8 273 333-655 196-480 (499)
56 KOG0284 Polyadenylation factor 100.0 3E-32 6.6E-37 270.3 18.1 278 624-1002 98-378 (464)
57 KOG0266 WD40 repeat-containing 100.0 3.2E-30 6.8E-35 291.4 32.6 291 394-716 157-454 (456)
58 KOG1445 Tumor-specific antigen 100.0 1.2E-29 2.6E-34 264.2 32.8 632 325-1063 70-850 (1012)
59 KOG0316 Conserved WD40 repeat- 100.0 3.3E-30 7.1E-35 236.9 22.8 272 390-679 11-285 (307)
60 KOG0282 mRNA splicing factor [ 100.0 2.6E-31 5.6E-36 270.0 17.1 291 390-714 208-503 (503)
61 PLN00181 protein SPA1-RELATED; 100.0 5.8E-29 1.3E-33 304.3 39.4 294 330-651 479-792 (793)
62 KOG0281 Beta-TrCP (transducin 100.0 3.8E-31 8.3E-36 256.2 15.2 275 395-721 196-482 (499)
63 KOG0278 Serine/threonine kinas 100.0 1.4E-30 3E-35 241.3 17.8 290 328-657 8-302 (334)
64 KOG0288 WD40 repeat protein Ti 100.0 2.4E-30 5.3E-35 257.4 18.6 298 320-650 161-459 (459)
65 KOG0310 Conserved WD40 repeat- 100.0 3.2E-29 6.9E-34 255.6 26.6 286 330-652 23-309 (487)
66 cd00200 WD40 WD40 domain, foun 100.0 2.5E-28 5.5E-33 265.3 34.6 285 392-714 5-289 (289)
67 KOG0640 mRNA cleavage stimulat 100.0 1.6E-28 3.4E-33 234.8 27.2 317 323-652 101-426 (430)
68 PLN00181 protein SPA1-RELATED; 100.0 9.2E-28 2E-32 293.8 40.5 322 356-763 457-792 (793)
69 KOG1407 WD40 repeat protein [F 100.0 3.1E-28 6.6E-33 227.9 27.5 279 328-643 14-293 (313)
70 KOG0641 WD40 repeat protein [G 100.0 2.4E-27 5.3E-32 216.2 31.7 311 325-652 24-349 (350)
71 KOG0973 Histone transcription 100.0 1.7E-28 3.8E-33 275.0 28.4 307 332-654 11-357 (942)
72 KOG0275 Conserved WD40 repeat- 100.0 2.4E-29 5.3E-34 241.3 18.3 290 733-1055 212-507 (508)
73 KOG0643 Translation initiation 100.0 1E-27 2.2E-32 225.0 27.2 287 329-653 5-318 (327)
74 KOG1446 Histone H3 (Lys4) meth 100.0 9.1E-27 2E-31 225.7 33.3 286 331-652 11-303 (311)
75 KOG0313 Microtubule binding pr 100.0 1.3E-27 2.8E-32 235.6 25.8 282 332-652 103-418 (423)
76 KOG0283 WD40 repeat-containing 100.0 4.1E-28 8.8E-33 265.3 24.5 310 325-654 257-578 (712)
77 KOG0278 Serine/threonine kinas 100.0 1.2E-28 2.5E-33 228.7 16.6 286 392-719 10-300 (334)
78 KOG0313 Microtubule binding pr 100.0 2.3E-27 5E-32 233.9 26.6 311 394-913 103-419 (423)
79 KOG0643 Translation initiation 100.0 8.4E-27 1.8E-31 218.9 28.1 286 391-716 5-317 (327)
80 PTZ00421 coronin; Provisional 100.0 2.3E-26 5E-31 257.6 36.8 289 332-633 18-314 (493)
81 KOG0973 Histone transcription 100.0 4.5E-27 9.8E-32 263.7 29.2 304 733-1060 12-358 (942)
82 KOG0274 Cdc4 and related F-box 100.0 5.2E-27 1.1E-31 262.4 29.6 284 332-660 206-490 (537)
83 KOG1446 Histone H3 (Lys4) meth 100.0 6.7E-26 1.4E-30 219.7 32.5 271 392-675 10-286 (311)
84 KOG0277 Peroxisomal targeting 100.0 4.1E-27 8.8E-32 219.4 22.4 286 336-651 10-308 (311)
85 KOG1407 WD40 repeat protein [F 100.0 1.7E-26 3.8E-31 216.2 26.1 253 392-659 16-268 (313)
86 KOG0640 mRNA cleavage stimulat 100.0 3.5E-27 7.7E-32 225.6 21.7 306 622-1003 112-425 (430)
87 KOG0310 Conserved WD40 repeat- 100.0 9E-27 2E-31 237.8 25.9 282 733-1056 25-308 (487)
88 KOG0305 Anaphase promoting com 100.0 1.5E-26 3.2E-31 247.3 28.1 279 337-654 180-463 (484)
89 KOG0647 mRNA export protein (c 100.0 3E-26 6.4E-31 219.3 26.9 277 333-642 26-313 (347)
90 KOG0772 Uncharacterized conser 100.0 9.6E-27 2.1E-31 237.8 23.3 309 319-652 152-487 (641)
91 KOG0299 U3 snoRNP-associated p 100.0 2.8E-26 6.1E-31 232.2 25.7 293 327-641 135-444 (479)
92 KOG0772 Uncharacterized conser 99.9 2.7E-26 5.8E-31 234.6 24.9 298 732-1060 165-491 (641)
93 PTZ00420 coronin; Provisional 99.9 5E-25 1.1E-29 247.1 36.9 237 392-634 70-318 (568)
94 KOG1963 WD40 repeat protein [G 99.9 6.7E-24 1.5E-28 232.9 44.5 566 392-1060 12-653 (792)
95 KOG0300 WD40 repeat-containing 99.9 3.6E-26 7.8E-31 219.1 22.6 297 325-717 139-477 (481)
96 KOG0288 WD40 repeat protein Ti 99.9 1.4E-26 3E-31 230.8 17.5 285 392-714 171-459 (459)
97 KOG0294 WD40 repeat-containing 99.9 6.1E-25 1.3E-29 211.7 27.9 243 793-1059 38-283 (362)
98 KOG0301 Phospholipase A2-activ 99.9 1.9E-25 4.2E-30 237.1 27.0 284 325-654 5-290 (745)
99 KOG0308 Conserved WD40 repeat- 99.9 9.4E-26 2E-30 237.4 24.1 295 332-653 19-328 (735)
100 KOG0283 WD40 repeat-containing 99.9 1.9E-25 4E-30 244.6 27.2 273 732-1007 265-579 (712)
101 KOG2096 WD40 repeat protein [G 99.9 3.7E-25 7.9E-30 212.8 25.0 313 657-1006 79-404 (420)
102 KOG0647 mRNA export protein (c 99.9 5.4E-25 1.2E-29 210.7 25.9 276 392-680 23-309 (347)
103 KOG0308 Conserved WD40 repeat- 99.9 5.7E-26 1.2E-30 239.1 21.0 356 401-836 29-402 (735)
104 PTZ00421 coronin; Provisional 99.9 1.2E-24 2.6E-29 243.8 33.1 270 395-674 19-313 (493)
105 KOG0277 Peroxisomal targeting 99.9 1.7E-25 3.7E-30 208.7 21.6 200 797-1003 103-308 (311)
106 KOG1445 Tumor-specific antigen 99.9 1E-23 2.3E-28 220.3 36.5 627 390-1060 73-801 (1012)
107 KOG0299 U3 snoRNP-associated p 99.9 5.9E-25 1.3E-29 222.7 26.3 250 392-654 138-412 (479)
108 KOG0289 mRNA splicing factor [ 99.9 1.3E-24 2.7E-29 218.1 28.1 282 335-651 220-505 (506)
109 KOG0274 Cdc4 and related F-box 99.9 4E-25 8.6E-30 247.3 27.4 280 394-721 206-487 (537)
110 KOG0289 mRNA splicing factor [ 99.9 1.5E-24 3.2E-29 217.6 28.2 280 623-1003 220-505 (506)
111 KOG0268 Sof1-like rRNA process 99.9 4.9E-26 1.1E-30 222.9 15.7 293 324-656 56-349 (433)
112 KOG1036 Mitotic spindle checkp 99.9 4E-24 8.8E-29 206.0 27.5 272 334-642 13-294 (323)
113 KOG0305 Anaphase promoting com 99.9 1.2E-24 2.6E-29 232.7 26.2 247 331-610 214-463 (484)
114 KOG0300 WD40 repeat-containing 99.9 1.1E-24 2.3E-29 209.1 23.0 322 436-913 143-477 (481)
115 KOG0641 WD40 repeat protein [G 99.9 3.5E-23 7.6E-28 189.1 30.3 300 392-764 28-349 (350)
116 KOG2096 WD40 repeat protein [G 99.9 5.4E-24 1.2E-28 204.8 25.7 251 391-657 81-365 (420)
117 KOG1274 WD40 repeat protein [G 99.9 3.2E-21 6.9E-26 212.1 50.6 280 331-649 10-297 (933)
118 KOG0268 Sof1-like rRNA process 99.9 2.2E-25 4.7E-30 218.4 16.2 284 436-765 61-346 (433)
119 KOG0294 WD40 repeat-containing 99.9 1.3E-23 2.9E-28 202.5 26.9 244 391-654 38-283 (362)
120 PTZ00420 coronin; Provisional 99.9 7.4E-23 1.6E-27 229.8 35.5 251 414-675 50-317 (568)
121 KOG1332 Vesicle coat complex C 99.9 1.6E-24 3.5E-29 201.0 17.8 251 392-652 7-286 (299)
122 KOG1963 WD40 repeat protein [G 99.9 1.5E-21 3.3E-26 214.6 42.7 516 439-1063 14-589 (792)
123 KOG0301 Phospholipase A2-activ 99.9 2E-23 4.4E-28 221.8 25.5 239 392-652 10-249 (745)
124 KOG4283 Transcription-coupled 99.9 1.6E-22 3.4E-27 192.6 25.4 321 331-716 40-365 (397)
125 KOG0646 WD40 repeat protein [G 99.9 5.8E-23 1.2E-27 208.9 23.8 242 376-633 64-330 (476)
126 KOG1273 WD40 repeat protein [G 99.9 1.1E-22 2.5E-27 195.6 24.2 299 321-654 12-324 (405)
127 KOG0639 Transducin-like enhanc 99.9 2.4E-23 5.2E-28 212.1 20.6 287 332-651 417-703 (705)
128 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.6E-21 7.7E-26 210.6 39.3 279 591-1013 2-288 (300)
129 KOG2055 WD40 repeat protein [G 99.9 1.2E-22 2.7E-27 205.7 24.7 287 335-652 214-512 (514)
130 KOG1274 WD40 repeat protein [G 99.9 3.1E-22 6.8E-27 219.9 29.7 285 732-1055 11-298 (933)
131 KOG2055 WD40 repeat protein [G 99.9 2.3E-22 5.1E-27 203.7 25.8 289 578-1004 213-512 (514)
132 KOG0264 Nucleosome remodeling 99.9 6E-23 1.3E-27 208.8 21.7 265 331-609 121-405 (422)
133 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.8E-21 6E-26 211.4 36.2 289 349-673 3-299 (300)
134 KOG1036 Mitotic spindle checkp 99.9 1.2E-21 2.7E-26 189.0 26.9 268 395-680 12-290 (323)
135 KOG4283 Transcription-coupled 99.9 9E-22 1.9E-26 187.6 25.4 305 732-1056 41-364 (397)
136 KOG0646 WD40 repeat protein [G 99.9 2.9E-22 6.4E-27 203.8 23.0 303 460-893 12-330 (476)
137 KOG1332 Vesicle coat complex C 99.9 1.3E-22 2.9E-27 188.4 18.6 254 330-608 7-286 (299)
138 KOG1538 Uncharacterized conser 99.9 3.8E-21 8.2E-26 202.5 30.4 452 443-957 14-520 (1081)
139 KOG0639 Transducin-like enhanc 99.9 2.5E-22 5.4E-27 204.7 19.7 273 696-1003 429-703 (705)
140 KOG4328 WD40 protein [Function 99.9 1.3E-21 2.9E-26 198.2 24.2 305 325-652 177-495 (498)
141 KOG1273 WD40 repeat protein [G 99.9 1.2E-21 2.5E-26 188.7 22.3 264 399-675 26-304 (405)
142 KOG1538 Uncharacterized conser 99.9 1.3E-20 2.8E-25 198.4 31.6 274 336-654 14-295 (1081)
143 KOG0267 Microtubule severing p 99.9 5.2E-23 1.1E-27 219.5 10.6 236 392-643 24-259 (825)
144 KOG0650 WD40 repeat nucleolar 99.9 2.3E-21 5E-26 202.4 22.3 323 317-713 383-732 (733)
145 KOG0264 Nucleosome remodeling 99.9 3.7E-21 8E-26 195.8 22.9 253 392-653 120-405 (422)
146 KOG0650 WD40 repeat nucleolar 99.9 2E-20 4.3E-25 195.5 24.4 321 568-958 393-732 (733)
147 KOG0269 WD40 repeat-containing 99.9 5.6E-21 1.2E-25 205.9 20.7 237 745-1007 99-343 (839)
148 KOG0267 Microtubule severing p 99.9 1E-21 2.3E-26 209.7 10.7 239 328-600 22-260 (825)
149 KOG0321 WD40 repeat-containing 99.9 6.5E-20 1.4E-24 193.4 23.6 289 746-1059 64-393 (720)
150 KOG0321 WD40 repeat-containing 99.9 5.4E-20 1.2E-24 194.0 22.7 291 340-654 55-393 (720)
151 KOG1034 Transcriptional repres 99.9 1.2E-19 2.7E-24 176.2 23.2 295 328-652 32-383 (385)
152 KOG2445 Nuclear pore complex c 99.9 2.7E-19 5.9E-24 172.3 25.2 257 392-654 9-320 (361)
153 KOG1009 Chromatin assembly com 99.9 1.3E-19 2.9E-24 181.2 23.6 306 330-655 10-375 (434)
154 KOG0269 WD40 repeat-containing 99.8 9.2E-21 2E-25 204.3 16.0 244 336-609 89-341 (839)
155 KOG0270 WD40 repeat-containing 99.8 4.1E-20 8.9E-25 187.0 19.6 243 408-658 192-455 (463)
156 KOG1034 Transcriptional repres 99.8 1.9E-19 4.1E-24 175.0 21.3 299 732-1056 36-382 (385)
157 KOG2445 Nuclear pore complex c 99.8 8.3E-19 1.8E-23 169.0 25.1 268 331-619 10-332 (361)
158 COG2319 FOG: WD40 repeat [Gene 99.8 1E-16 2.3E-21 186.2 48.1 373 436-913 60-443 (466)
159 KOG4378 Nuclear protein COP1 [ 99.8 4.9E-19 1.1E-23 180.8 24.2 294 594-986 6-305 (673)
160 KOG0307 Vesicle coat complex C 99.8 1.9E-20 4.2E-25 211.7 15.2 299 336-655 8-330 (1049)
161 KOG1912 WD40 repeat protein [G 99.8 8.9E-18 1.9E-22 180.8 34.4 606 334-1007 15-744 (1062)
162 COG2319 FOG: WD40 repeat [Gene 99.8 2.4E-16 5.1E-21 183.2 49.3 289 329-654 60-361 (466)
163 KOG4378 Nuclear protein COP1 [ 99.8 5.6E-19 1.2E-23 180.3 21.9 294 350-676 7-305 (673)
164 KOG4497 Uncharacterized conser 99.8 1.1E-18 2.4E-23 169.3 21.4 409 401-905 13-425 (447)
165 KOG1009 Chromatin assembly com 99.8 7.6E-18 1.6E-22 168.8 26.9 303 734-1060 13-375 (434)
166 KOG1912 WD40 repeat protein [G 99.8 4.3E-17 9.4E-22 175.6 34.2 482 395-941 14-572 (1062)
167 KOG0303 Actin-binding protein 99.8 3.8E-18 8.1E-23 169.9 23.5 237 391-633 76-320 (472)
168 KOG0302 Ribosome Assembly prot 99.8 2.4E-18 5.2E-23 170.3 21.9 264 329-605 146-435 (440)
169 KOG4328 WD40 protein [Function 99.8 2.8E-18 6.2E-23 174.3 22.8 263 393-662 183-460 (498)
170 KOG2919 Guanine nucleotide-bin 99.8 1E-17 2.3E-22 162.4 24.7 228 744-996 121-362 (406)
171 KOG2919 Guanine nucleotide-bin 99.8 5.9E-18 1.3E-22 164.1 22.8 287 338-643 53-361 (406)
172 KOG1524 WD40 repeat-containing 99.8 4.9E-17 1.1E-21 167.9 30.4 498 395-1060 13-526 (737)
173 KOG0302 Ribosome Assembly prot 99.8 1.4E-18 3E-23 172.0 17.9 175 324-518 201-379 (440)
174 KOG0644 Uncharacterized conser 99.8 1.7E-19 3.6E-24 195.4 11.1 287 326-657 182-473 (1113)
175 KOG0270 WD40 repeat-containing 99.8 4.3E-18 9.3E-23 172.6 19.8 258 346-613 192-454 (463)
176 KOG4497 Uncharacterized conser 99.8 2.6E-17 5.7E-22 159.8 22.4 337 535-996 14-424 (447)
177 KOG0303 Actin-binding protein 99.8 1.9E-17 4.1E-22 165.0 19.4 236 330-589 77-320 (472)
178 KOG0649 WD40 repeat protein [G 99.8 5.1E-16 1.1E-20 144.6 26.9 290 736-1055 12-314 (325)
179 KOG1524 WD40 repeat-containing 99.8 9.9E-16 2.1E-20 158.4 31.6 497 332-962 12-524 (737)
180 KOG0307 Vesicle coat complex C 99.8 3.7E-18 8E-23 193.5 14.5 251 336-611 66-330 (1049)
181 KOG4227 WD40 repeat protein [G 99.8 7.1E-17 1.5E-21 160.0 21.6 303 326-652 48-387 (609)
182 KOG1334 WD40 repeat protein [G 99.8 5.3E-18 1.2E-22 173.5 14.1 302 325-654 133-468 (559)
183 KOG1310 WD40 repeat protein [G 99.8 3.8E-17 8.3E-22 169.2 20.2 246 326-617 42-312 (758)
184 KOG0322 G-protein beta subunit 99.8 2.1E-17 4.6E-22 155.8 16.7 308 568-911 7-322 (323)
185 KOG0322 G-protein beta subunit 99.8 1.8E-17 3.9E-22 156.3 14.9 294 323-651 3-322 (323)
186 KOG0642 Cell-cycle nuclear pro 99.8 1.2E-17 2.7E-22 174.5 15.2 261 391-662 289-571 (577)
187 PRK11028 6-phosphogluconolacto 99.7 4.2E-15 9.1E-20 163.5 35.6 202 802-1008 83-310 (330)
188 KOG4227 WD40 repeat protein [G 99.7 2.3E-16 5E-21 156.4 21.5 296 391-716 51-387 (609)
189 KOG0649 WD40 repeat protein [G 99.7 1.4E-15 3E-20 141.8 25.0 283 336-649 12-313 (325)
190 KOG2110 Uncharacterized conser 99.7 1E-14 2.2E-19 145.2 32.1 242 396-654 5-250 (391)
191 KOG0642 Cell-cycle nuclear pro 99.7 3.6E-17 7.9E-22 171.0 15.6 269 328-619 288-572 (577)
192 KOG0290 Conserved WD40 repeat- 99.7 7.5E-16 1.6E-20 147.5 22.8 289 328-649 39-362 (364)
193 KOG0644 Uncharacterized conser 99.7 9.2E-18 2E-22 182.1 11.0 288 566-915 181-471 (1113)
194 KOG1188 WD40 repeat protein [G 99.7 1.7E-16 3.7E-21 155.7 17.8 292 457-764 42-346 (376)
195 KOG1188 WD40 repeat protein [G 99.7 2.9E-16 6.2E-21 154.1 18.8 275 349-652 42-346 (376)
196 KOG2110 Uncharacterized conser 99.7 5.7E-15 1.2E-19 146.8 28.0 241 798-1060 5-251 (391)
197 KOG1007 WD repeat protein TSSC 99.7 3.6E-16 7.8E-21 149.4 18.2 228 818-1058 39-290 (370)
198 KOG1007 WD repeat protein TSSC 99.7 1.5E-15 3.1E-20 145.3 21.7 183 800-1004 172-361 (370)
199 PRK11028 6-phosphogluconolacto 99.7 2.2E-14 4.7E-19 157.9 34.5 275 348-652 3-304 (330)
200 KOG1517 Guanine nucleotide bin 99.7 4.1E-15 9E-20 166.1 24.9 302 580-1007 1066-1384(1387)
201 KOG1517 Guanine nucleotide bin 99.7 7.5E-15 1.6E-19 164.1 25.3 299 330-654 1060-1383(1387)
202 KOG0771 Prolactin regulatory e 99.7 5.8E-16 1.3E-20 157.0 15.1 198 802-1005 148-355 (398)
203 PF02239 Cytochrom_D1: Cytochr 99.7 1.3E-13 2.8E-18 150.1 33.8 318 554-970 15-356 (369)
204 PRK01742 tolB translocation pr 99.7 6.1E-15 1.3E-19 167.0 24.3 235 356-633 183-426 (429)
205 KOG1240 Protein kinase contain 99.7 4.7E-14 1E-18 160.6 28.7 256 392-655 1044-1337(1431)
206 KOG0771 Prolactin regulatory e 99.7 2.8E-15 6.1E-20 152.1 16.5 197 843-1058 148-355 (398)
207 PF02239 Cytochrom_D1: Cytochr 99.6 1.3E-13 2.9E-18 150.0 30.5 322 501-919 8-354 (369)
208 KOG1240 Protein kinase contain 99.6 4.4E-14 9.6E-19 160.8 26.8 275 323-613 1037-1339(1431)
209 KOG1587 Cytoplasmic dynein int 99.6 4.2E-14 9.1E-19 157.3 26.1 250 395-654 241-518 (555)
210 PRK01742 tolB translocation pr 99.6 2.1E-14 4.6E-19 162.6 21.6 231 320-589 189-426 (429)
211 KOG0290 Conserved WD40 repeat- 99.6 4.1E-14 8.8E-19 135.8 19.9 245 332-598 94-356 (364)
212 COG4946 Uncharacterized protei 99.6 5.1E-11 1.1E-15 122.3 43.1 415 346-902 50-508 (668)
213 KOG2394 WD40 protein DMR-N9 [G 99.6 1.1E-13 2.4E-18 144.0 24.1 169 807-984 182-384 (636)
214 KOG0974 WD-repeat protein WDR6 99.6 9.5E-12 2E-16 140.7 41.2 277 336-654 9-290 (967)
215 KOG2111 Uncharacterized conser 99.6 2E-12 4.4E-17 126.4 31.0 241 398-654 7-258 (346)
216 KOG1832 HIV-1 Vpr-binding prot 99.6 1.1E-15 2.4E-20 166.8 9.1 343 171-642 1014-1379(1516)
217 KOG2139 WD40 repeat protein [G 99.6 4.5E-13 9.9E-18 132.7 26.2 260 734-1004 140-431 (445)
218 KOG2139 WD40 repeat protein [G 99.6 6.3E-13 1.4E-17 131.7 26.7 288 336-652 100-431 (445)
219 KOG1523 Actin-related protein 99.6 1.5E-13 3.3E-18 134.1 21.9 246 395-691 9-276 (361)
220 KOG0974 WD-repeat protein WDR6 99.6 4.3E-11 9.3E-16 135.5 44.3 200 336-565 89-290 (967)
221 KOG1334 WD40 repeat protein [G 99.6 1.5E-14 3.2E-19 148.7 15.4 296 392-716 138-466 (559)
222 KOG1587 Cytoplasmic dynein int 99.6 1.1E-13 2.5E-18 153.9 23.8 253 335-609 243-517 (555)
223 PF04762 IKI3: IKI3 family; I 99.6 1.2E-09 2.6E-14 132.3 59.2 514 395-1057 74-639 (928)
224 PRK03629 tolB translocation pr 99.6 1.3E-12 2.8E-17 147.5 29.1 238 357-632 179-427 (429)
225 KOG2111 Uncharacterized conser 99.6 1.4E-12 3E-17 127.5 24.8 241 799-1060 6-259 (346)
226 KOG1523 Actin-related protein 99.6 4.9E-13 1.1E-17 130.6 21.4 237 334-599 10-269 (361)
227 COG4946 Uncharacterized protei 99.6 4E-10 8.7E-15 115.9 43.0 526 322-1005 66-655 (668)
228 KOG2321 WD40 repeat protein [G 99.6 9.4E-13 2E-17 138.2 24.2 284 332-654 49-345 (703)
229 KOG2041 WD40 repeat protein [G 99.6 1.5E-11 3.2E-16 132.1 33.6 520 395-1004 13-619 (1189)
230 PRK03629 tolB translocation pr 99.5 7.6E-13 1.6E-17 149.4 25.0 233 320-588 184-427 (429)
231 PRK05137 tolB translocation pr 99.5 2.6E-12 5.7E-17 146.3 29.2 237 357-632 182-432 (435)
232 PF04762 IKI3: IKI3 family; I 99.5 4.2E-09 9E-14 127.7 56.7 575 333-1010 74-690 (928)
233 PRK04922 tolB translocation pr 99.5 1.1E-12 2.4E-17 149.0 24.2 234 319-588 188-432 (433)
234 KOG1310 WD40 repeat protein [G 99.5 1.3E-13 2.8E-18 143.5 14.6 239 392-659 46-310 (758)
235 PRK04922 tolB translocation pr 99.5 2.2E-12 4.8E-17 146.6 25.8 238 357-632 184-432 (433)
236 KOG2315 Predicted translation 99.5 2.2E-11 4.7E-16 128.5 30.7 285 336-659 36-351 (566)
237 COG5354 Uncharacterized protei 99.5 8.5E-12 1.8E-16 129.7 27.3 281 334-653 32-349 (561)
238 KOG1272 WD40-repeat-containing 99.5 5.9E-14 1.3E-18 143.4 11.2 268 396-686 129-401 (545)
239 PRK02889 tolB translocation pr 99.5 1.8E-12 3.8E-17 146.7 24.1 234 320-588 181-424 (427)
240 KOG2041 WD40 repeat protein [G 99.5 7.2E-11 1.6E-15 127.0 34.0 539 336-963 16-621 (1189)
241 PF10282 Lactonase: Lactonase, 99.5 3.7E-10 8E-15 124.0 41.1 211 800-1012 88-332 (345)
242 PRK02889 tolB translocation pr 99.5 4E-12 8.8E-17 143.8 25.8 223 392-632 191-424 (427)
243 KOG2315 Predicted translation 99.5 8.8E-11 1.9E-15 124.0 33.2 132 862-1008 251-394 (566)
244 COG5354 Uncharacterized protei 99.5 1.1E-10 2.3E-15 121.7 32.4 365 513-996 16-421 (561)
245 KOG1272 WD40-repeat-containing 99.5 1.6E-13 3.6E-18 140.2 11.7 273 336-649 131-406 (545)
246 KOG2394 WD40 protein DMR-N9 [G 99.5 6.9E-13 1.5E-17 138.1 15.8 153 335-494 220-383 (636)
247 KOG3881 Uncharacterized conser 99.5 6.1E-12 1.3E-16 126.5 21.8 273 334-633 55-342 (412)
248 PRK05137 tolB translocation pr 99.5 5.9E-12 1.3E-16 143.4 24.9 233 320-588 187-432 (435)
249 KOG2321 WD40 repeat protein [G 99.5 1.3E-11 2.8E-16 129.8 24.1 284 439-871 49-344 (703)
250 KOG2314 Translation initiation 99.5 9E-11 1.9E-15 123.1 29.1 327 531-1005 212-574 (698)
251 COG2706 3-carboxymuconate cycl 99.4 6.6E-10 1.4E-14 112.0 33.5 281 707-1009 15-328 (346)
252 TIGR02658 TTQ_MADH_Hv methylam 99.4 1.6E-09 3.5E-14 114.7 36.8 200 803-1013 109-339 (352)
253 PF10282 Lactonase: Lactonase, 99.4 2.6E-09 5.7E-14 117.3 39.4 297 555-982 13-345 (345)
254 PF08662 eIF2A: Eukaryotic tra 99.4 3.1E-11 6.8E-16 119.1 21.1 155 843-1013 9-187 (194)
255 KOG2659 LisH motif-containing 99.4 2.3E-12 4.9E-17 122.5 10.9 170 3-184 24-205 (228)
256 KOG1409 Uncharacterized conser 99.4 7.6E-11 1.7E-15 116.5 21.6 339 566-1005 15-395 (404)
257 TIGR02658 TTQ_MADH_Hv methylam 99.4 9.5E-10 2.1E-14 116.5 31.6 270 357-660 27-338 (352)
258 PRK01029 tolB translocation pr 99.4 1.1E-10 2.5E-15 131.0 26.4 238 324-590 174-426 (428)
259 KOG3881 Uncharacterized conser 99.4 7.8E-11 1.7E-15 118.7 21.0 117 798-915 202-323 (412)
260 COG2706 3-carboxymuconate cycl 99.4 4.2E-09 9.1E-14 106.3 33.2 255 797-1066 38-330 (346)
261 PRK00178 tolB translocation pr 99.4 1.3E-10 2.9E-15 132.8 25.7 230 324-588 188-427 (430)
262 KOG2314 Translation initiation 99.3 1.7E-10 3.6E-15 121.1 23.0 318 298-652 216-573 (698)
263 PRK04792 tolB translocation pr 99.3 9.6E-11 2.1E-15 132.9 23.5 230 324-588 207-446 (448)
264 PRK01029 tolB translocation pr 99.3 4.7E-10 1E-14 126.1 28.8 242 357-633 165-425 (428)
265 PRK04792 tolB translocation pr 99.3 5.2E-10 1.1E-14 126.9 28.2 223 392-632 213-446 (448)
266 PRK00178 tolB translocation pr 99.3 7.8E-10 1.7E-14 126.5 29.1 223 392-632 194-427 (430)
267 TIGR02800 propeller_TolB tol-p 99.3 5.6E-10 1.2E-14 127.8 27.4 210 392-617 185-405 (417)
268 TIGR02800 propeller_TolB tol-p 99.3 2.4E-10 5.2E-15 130.9 24.3 216 324-572 179-405 (417)
269 KOG1354 Serine/threonine prote 99.3 8.8E-10 1.9E-14 109.0 24.3 356 441-959 25-432 (433)
270 KOG1354 Serine/threonine prote 99.3 2.2E-10 4.8E-15 113.2 18.2 267 332-611 23-362 (433)
271 PF08662 eIF2A: Eukaryotic tra 99.3 4.4E-10 9.6E-15 110.9 20.7 163 445-617 9-187 (194)
272 KOG1409 Uncharacterized conser 99.3 5.1E-11 1.1E-15 117.7 13.2 353 477-871 16-395 (404)
273 KOG4547 WD40 repeat-containing 99.2 1.1E-09 2.3E-14 117.0 22.7 188 808-1005 3-221 (541)
274 KOG4547 WD40 repeat-containing 99.2 8.5E-10 1.8E-14 117.8 20.3 194 405-609 2-221 (541)
275 TIGR03300 assembly_YfgL outer 99.2 2.1E-08 4.5E-13 112.7 32.8 209 817-1054 153-376 (377)
276 TIGR03300 assembly_YfgL outer 99.2 2.5E-08 5.3E-13 112.1 31.1 183 457-654 67-261 (377)
277 KOG0280 Uncharacterized conser 99.1 5.4E-09 1.2E-13 101.5 17.9 251 336-610 71-335 (339)
278 PLN02919 haloacid dehalogenase 99.1 6.5E-08 1.4E-12 120.0 31.3 255 802-1060 571-891 (1057)
279 PLN02919 haloacid dehalogenase 99.1 9.1E-08 2E-12 118.8 32.0 260 738-1008 571-892 (1057)
280 PRK04043 tolB translocation pr 99.1 4.2E-08 9E-13 109.5 25.3 207 325-565 179-402 (419)
281 KOG0280 Uncharacterized conser 99.0 5E-08 1.1E-12 95.0 21.5 199 801-1007 124-336 (339)
282 KOG4190 Uncharacterized conser 99.0 1.4E-09 3E-14 113.7 11.5 244 392-651 731-987 (1034)
283 KOG1897 Damage-specific DNA bi 99.0 0.00018 3.9E-09 82.6 51.4 230 811-1060 685-945 (1096)
284 PF15492 Nbas_N: Neuroblastoma 99.0 2.1E-07 4.6E-12 91.4 23.9 206 804-1014 3-269 (282)
285 KOG1897 Damage-specific DNA bi 99.0 0.00023 5E-09 81.8 52.7 622 332-1001 304-1001(1096)
286 KOG4190 Uncharacterized conser 98.9 5.1E-09 1.1E-13 109.6 11.6 296 324-648 725-1032(1034)
287 KOG0309 Conserved WD40 repeat- 98.9 6.5E-09 1.4E-13 112.9 12.5 211 389-609 107-340 (1081)
288 KOG3617 WD40 and TPR repeat-co 98.9 2.6E-07 5.6E-12 102.2 24.2 485 397-966 16-590 (1416)
289 KOG1064 RAVE (regulator of V-A 98.9 6.2E-09 1.3E-13 123.9 12.6 201 330-575 2204-2410(2439)
290 PRK04043 tolB translocation pr 98.9 7.4E-07 1.6E-11 99.6 28.5 211 820-1060 170-401 (419)
291 PRK11138 outer membrane biogen 98.9 2E-06 4.3E-11 97.0 32.2 218 810-1056 161-393 (394)
292 KOG1064 RAVE (regulator of V-A 98.9 1.1E-08 2.5E-13 121.8 11.8 201 392-618 2204-2408(2439)
293 PF15492 Nbas_N: Neuroblastoma 98.8 2.3E-06 4.9E-11 84.3 24.9 216 845-1065 3-269 (282)
294 PF07433 DUF1513: Protein of u 98.8 7.9E-06 1.7E-10 83.5 29.3 205 802-1013 8-256 (305)
295 KOG3914 WD repeat protein WDR4 98.8 5E-08 1.1E-12 99.6 13.5 164 336-525 64-231 (390)
296 PF07433 DUF1513: Protein of u 98.8 5.9E-06 1.3E-10 84.4 27.7 233 337-602 7-279 (305)
297 PF13360 PQQ_2: PQQ-like domai 98.8 2E-06 4.4E-11 89.8 24.6 223 818-1064 2-237 (238)
298 KOG3914 WD repeat protein WDR4 98.8 8.2E-08 1.8E-12 98.1 12.6 159 843-1013 66-232 (390)
299 PF08450 SGL: SMP-30/Gluconola 98.7 1.6E-05 3.5E-10 83.1 30.2 221 739-993 4-244 (246)
300 KOG1832 HIV-1 Vpr-binding prot 98.7 7.8E-09 1.7E-13 114.4 4.9 216 392-639 1097-1318(1516)
301 PF08450 SGL: SMP-30/Gluconola 98.7 3.4E-05 7.4E-10 80.7 31.5 216 802-1045 3-243 (246)
302 KOG0882 Cyclophilin-related pe 98.7 7E-07 1.5E-11 92.2 17.8 299 733-1054 8-369 (558)
303 PRK11138 outer membrane biogen 98.7 1.9E-05 4.2E-10 89.0 31.1 309 501-911 71-393 (394)
304 KOG0309 Conserved WD40 repeat- 98.7 1.4E-07 3E-12 102.9 12.3 296 395-717 23-340 (1081)
305 KOG4532 WD40-like repeat conta 98.7 3.2E-06 6.9E-11 81.5 19.8 148 399-548 161-321 (344)
306 COG5170 CDC55 Serine/threonine 98.7 3.7E-07 7.9E-12 89.4 13.3 254 797-1055 25-365 (460)
307 COG5170 CDC55 Serine/threonine 98.7 3.2E-07 7E-12 89.8 12.9 119 796-915 170-312 (460)
308 KOG4532 WD40-like repeat conta 98.6 8.7E-06 1.9E-10 78.6 21.5 199 809-1015 83-293 (344)
309 PRK02888 nitrous-oxide reducta 98.6 7.4E-06 1.6E-10 91.6 24.3 184 804-1005 198-405 (635)
310 KOG0882 Cyclophilin-related pe 98.6 3.2E-06 6.9E-11 87.5 18.4 214 439-661 7-240 (558)
311 PF13360 PQQ_2: PQQ-like domai 98.6 1.2E-05 2.7E-10 83.9 23.6 195 809-1011 35-237 (238)
312 KOG1920 IkappaB kinase complex 98.6 8E-05 1.7E-09 87.4 31.3 241 579-915 69-325 (1265)
313 KOG3617 WD40 and TPR repeat-co 98.6 4.2E-06 9.1E-11 93.0 19.9 308 337-690 18-381 (1416)
314 PF06433 Me-amine-dh_H: Methyl 98.6 4.7E-05 1E-09 78.8 25.9 251 737-1013 38-329 (342)
315 KOG2695 WD40 repeat protein [G 98.5 2.6E-07 5.7E-12 92.0 9.0 168 338-529 215-388 (425)
316 KOG4714 Nucleoporin [Nuclear s 98.5 1.6E-06 3.5E-11 83.2 13.5 209 337-564 39-255 (319)
317 PF00930 DPPIV_N: Dipeptidyl p 98.5 5.9E-05 1.3E-09 83.3 27.5 267 343-642 1-347 (353)
318 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.0012 2.6E-08 64.1 31.7 135 500-646 24-159 (354)
319 PF00400 WD40: WD domain, G-be 98.5 3.7E-07 7.9E-12 63.4 6.3 39 872-910 1-39 (39)
320 KOG1275 PAB-dependent poly(A) 98.5 3E-06 6.5E-11 95.3 15.9 180 809-1002 146-340 (1118)
321 PRK02888 nitrous-oxide reducta 98.5 2.7E-05 6E-10 87.1 23.3 136 806-950 284-449 (635)
322 PF06433 Me-amine-dh_H: Methyl 98.5 5.2E-05 1.1E-09 78.5 23.7 285 555-880 17-330 (342)
323 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00044 9.6E-09 66.9 27.8 145 341-513 17-161 (354)
324 KOG1645 RING-finger-containing 98.5 2E-05 4.3E-10 80.7 19.7 251 391-652 188-461 (463)
325 KOG1920 IkappaB kinase complex 98.4 6.2E-05 1.3E-09 88.3 25.7 283 333-652 67-365 (1265)
326 PF10607 CLTH: CTLH/CRA C-term 98.4 9.2E-07 2E-11 83.4 8.1 134 38-183 5-141 (145)
327 PF00400 WD40: WD domain, G-be 98.3 8.1E-07 1.8E-11 61.7 4.9 38 325-363 2-39 (39)
328 KOG4714 Nucleoporin [Nuclear s 98.3 8.4E-06 1.8E-10 78.4 12.1 195 851-1055 100-316 (319)
329 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.00038 8.2E-09 77.0 27.4 307 538-900 1-345 (353)
330 PF14583 Pectate_lyase22: Olig 98.3 0.0018 4E-08 68.7 30.3 278 340-650 41-379 (386)
331 KOG3621 WD40 repeat-containing 98.3 0.0002 4.3E-09 79.4 23.6 280 336-654 35-355 (726)
332 KOG2066 Vacuolar assembly/sort 98.3 2.2E-05 4.7E-10 87.8 16.5 188 840-1057 40-233 (846)
333 KOG0396 Uncharacterized conser 98.3 6.8E-06 1.5E-10 83.4 11.6 118 5-124 115-241 (389)
334 KOG2695 WD40 repeat protein [G 98.3 2.3E-06 5.1E-11 85.5 7.6 134 333-484 251-387 (425)
335 cd00216 PQQ_DH Dehydrogenases 98.2 0.00065 1.4E-08 78.5 28.3 248 811-1071 111-438 (488)
336 KOG2114 Vacuolar assembly/sort 98.2 0.00011 2.4E-09 83.0 20.1 207 846-1066 30-252 (933)
337 KOG1645 RING-finger-containing 98.2 0.00012 2.6E-09 75.3 18.5 249 328-608 187-461 (463)
338 KOG1275 PAB-dependent poly(A) 98.2 3.5E-05 7.5E-10 87.2 14.8 186 457-652 149-342 (1118)
339 KOG2066 Vacuolar assembly/sort 98.1 0.00021 4.5E-09 80.3 19.9 186 736-961 41-233 (846)
340 KOG2114 Vacuolar assembly/sort 98.1 0.00078 1.7E-08 76.4 23.7 203 341-575 30-256 (933)
341 PF11768 DUF3312: Protein of u 98.1 0.0022 4.8E-08 70.5 26.4 113 935-1060 208-332 (545)
342 PF02897 Peptidase_S9_N: Proly 98.1 0.0054 1.2E-07 70.0 31.5 252 336-613 125-409 (414)
343 PRK13616 lipoprotein LpqB; Pro 98.0 0.001 2.3E-08 77.2 24.6 222 840-1076 350-587 (591)
344 smart00668 CTLH C-terminal to 98.0 3.3E-06 7.1E-11 64.8 2.8 53 37-90 4-56 (58)
345 PF08513 LisH: LisH; InterPro 98.0 7.8E-06 1.7E-10 49.9 3.8 27 6-32 1-27 (27)
346 COG0823 TolB Periplasmic compo 98.0 0.00047 1E-08 76.6 20.1 197 324-549 182-389 (425)
347 cd00216 PQQ_DH Dehydrogenases 97.9 0.0044 9.6E-08 71.6 27.8 249 349-621 112-437 (488)
348 PF06977 SdiA-regulated: SdiA- 97.9 0.0033 7.1E-08 64.0 23.1 215 834-1054 16-247 (248)
349 PF11768 DUF3312: Protein of u 97.9 0.00063 1.4E-08 74.6 18.8 114 798-914 205-331 (545)
350 PF06977 SdiA-regulated: SdiA- 97.9 0.0034 7.3E-08 63.9 22.8 197 328-547 15-239 (248)
351 PF08596 Lgl_C: Lethal giant l 97.9 0.0026 5.6E-08 70.0 23.6 282 736-1060 3-338 (395)
352 PF14583 Pectate_lyase22: Olig 97.9 0.012 2.5E-07 62.8 27.1 287 740-1056 41-380 (386)
353 KOG3621 WD40 repeat-containing 97.9 0.0012 2.5E-08 73.5 20.3 119 625-765 36-155 (726)
354 smart00667 LisH Lissencephaly 97.9 1.7E-05 3.8E-10 52.8 4.0 32 4-35 2-33 (34)
355 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.057 1.2E-06 62.7 35.0 61 819-881 441-501 (527)
356 PF04841 Vps16_N: Vps16, N-ter 97.8 0.012 2.6E-07 66.0 27.2 198 804-1013 34-255 (410)
357 COG3391 Uncharacterized conser 97.8 0.009 1.9E-07 66.5 26.1 208 800-1015 75-294 (381)
358 COG0823 TolB Periplasmic compo 97.8 0.0022 4.9E-08 71.3 20.9 172 821-1008 175-362 (425)
359 PF08596 Lgl_C: Lethal giant l 97.7 0.0082 1.8E-07 66.2 23.8 255 336-597 3-325 (395)
360 PF04053 Coatomer_WDAD: Coatom 97.7 0.0084 1.8E-07 67.0 23.9 223 392-653 28-263 (443)
361 PF04053 Coatomer_WDAD: Coatom 97.6 0.015 3.3E-07 65.0 24.6 219 798-1058 32-263 (443)
362 COG3490 Uncharacterized protei 97.6 0.028 6.2E-07 55.8 22.7 254 581-910 70-346 (366)
363 PF02897 Peptidase_S9_N: Proly 97.6 0.039 8.4E-07 62.9 28.6 247 398-656 125-408 (414)
364 PRK13616 lipoprotein LpqB; Pro 97.6 0.0035 7.5E-08 73.0 19.7 187 799-999 350-563 (591)
365 COG3490 Uncharacterized protei 97.6 0.017 3.6E-07 57.4 20.9 231 803-1055 72-346 (366)
366 PF00780 CNH: CNH domain; Int 97.6 0.035 7.6E-07 59.2 26.0 234 744-1013 5-264 (275)
367 PF04841 Vps16_N: Vps16, N-ter 97.5 0.22 4.7E-06 56.0 32.1 135 805-968 185-321 (410)
368 KOG1008 Uncharacterized conser 97.5 3.8E-05 8.3E-10 83.5 2.1 203 334-563 56-275 (783)
369 COG3391 Uncharacterized conser 97.5 0.13 2.8E-06 57.4 29.3 251 398-661 32-292 (381)
370 PF08553 VID27: VID27 cytoplas 97.5 0.0069 1.5E-07 71.3 19.5 148 851-1003 492-646 (794)
371 COG3386 Gluconolactonase [Carb 97.5 0.036 7.9E-07 58.7 23.2 220 804-1047 30-275 (307)
372 PF00780 CNH: CNH domain; Int 97.5 0.11 2.4E-06 55.4 27.6 228 345-619 6-266 (275)
373 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.4 0.46 1E-05 55.3 37.3 197 457-658 71-339 (527)
374 KOG1008 Uncharacterized conser 97.3 0.00011 2.3E-09 80.2 1.8 202 488-716 59-275 (783)
375 COG3386 Gluconolactonase [Carb 97.2 0.092 2E-06 55.7 23.2 223 339-597 29-274 (307)
376 TIGR03074 PQQ_membr_DH membran 97.2 0.99 2.1E-05 54.5 39.7 205 457-661 196-486 (764)
377 KOG2817 Predicted E3 ubiquitin 97.1 0.0029 6.4E-08 65.9 10.4 101 6-108 117-230 (394)
378 PF14655 RAB3GAP2_N: Rab3 GTPa 97.1 0.1 2.2E-06 57.4 22.7 83 797-879 306-407 (415)
379 KOG4640 Anaphase-promoting com 97.1 0.0021 4.5E-08 70.7 9.4 94 335-451 21-115 (665)
380 PF03178 CPSF_A: CPSF A subuni 97.1 0.036 7.7E-07 60.6 19.3 181 810-1001 42-262 (321)
381 PF10647 Gmad1: Lipoprotein Lp 97.1 0.25 5.4E-06 51.4 24.0 206 841-1072 25-249 (253)
382 PRK10115 protease 2; Provision 97.0 1 2.2E-05 54.5 32.3 245 397-654 127-396 (686)
383 PF14655 RAB3GAP2_N: Rab3 GTPa 97.0 0.16 3.4E-06 55.9 23.0 84 530-619 308-409 (415)
384 PF03178 CPSF_A: CPSF A subuni 97.0 0.089 1.9E-06 57.4 21.5 178 357-563 2-202 (321)
385 KOG4640 Anaphase-promoting com 97.0 0.0035 7.5E-08 69.0 9.6 92 798-891 20-114 (665)
386 smart00320 WD40 WD40 repeats. 97.0 0.002 4.3E-08 43.9 5.5 39 872-910 2-40 (40)
387 PF07995 GSDH: Glucose / Sorbo 97.0 0.27 5.8E-06 53.6 24.2 241 800-1052 3-330 (331)
388 PRK10115 protease 2; Provision 96.9 1.6 3.5E-05 52.7 32.9 244 336-611 128-397 (686)
389 PF08553 VID27: VID27 cytoplas 96.9 0.024 5.3E-07 66.9 16.4 146 453-607 492-646 (794)
390 KOG2395 Protein involved in va 96.9 0.018 4E-07 62.1 13.8 144 854-1003 348-499 (644)
391 PF14783 BBS2_Mid: Ciliary BBS 96.9 0.072 1.6E-06 45.6 14.7 68 842-913 2-72 (111)
392 PF05694 SBP56: 56kDa selenium 96.9 0.19 4E-06 54.3 21.1 238 745-994 86-393 (461)
393 PF10647 Gmad1: Lipoprotein Lp 96.7 0.18 4E-06 52.4 20.0 147 799-950 24-183 (253)
394 PF07995 GSDH: Glucose / Sorbo 96.7 1 2.3E-05 49.0 26.6 68 580-647 254-330 (331)
395 PF14870 PSII_BNR: Photosynthe 96.7 1.1 2.5E-05 47.2 27.1 157 837-1001 142-301 (302)
396 KOG2395 Protein involved in va 96.6 0.038 8.1E-07 59.8 13.9 144 453-606 344-498 (644)
397 smart00320 WD40 WD40 repeats. 96.4 0.0094 2E-07 40.3 5.6 39 829-868 2-40 (40)
398 PF05096 Glu_cyclase_2: Glutam 96.4 1.4 2.9E-05 45.0 23.6 186 799-993 45-249 (264)
399 PHA02713 hypothetical protein; 96.3 0.27 5.8E-06 57.8 20.2 195 851-1069 303-543 (557)
400 PHA02713 hypothetical protein; 96.3 0.18 4E-06 59.2 18.8 202 452-664 303-545 (557)
401 COG3204 Uncharacterized protei 96.3 0.4 8.7E-06 48.6 17.9 172 878-1059 81-265 (316)
402 KOG4441 Proteins containing BT 96.3 0.37 8E-06 56.5 20.7 235 407-655 284-549 (571)
403 PF14783 BBS2_Mid: Ciliary BBS 96.3 0.13 2.9E-06 44.1 12.4 102 337-468 2-109 (111)
404 KOG2079 Vacuolar assembly/sort 96.3 0.073 1.6E-06 62.8 14.4 104 407-516 98-202 (1206)
405 PF14727 PHTB1_N: PTHB1 N-term 96.2 2.7 5.9E-05 46.6 31.2 277 745-1060 36-363 (418)
406 PRK13684 Ycf48-like protein; P 96.2 2.5 5.4E-05 46.1 29.7 158 882-1058 172-332 (334)
407 KOG1898 Splicing factor 3b, su 96.2 4.4 9.6E-05 48.6 32.8 104 804-912 939-1048(1205)
408 PF14870 PSII_BNR: Photosynthe 96.1 2.5 5.4E-05 44.7 30.9 231 800-1054 63-301 (302)
409 COG3204 Uncharacterized protei 95.9 2.3 5E-05 43.4 21.5 193 437-636 81-297 (316)
410 KOG2079 Vacuolar assembly/sort 95.9 0.62 1.3E-05 55.5 19.2 98 349-472 101-202 (1206)
411 PF05694 SBP56: 56kDa selenium 95.8 1.2 2.6E-05 48.4 20.0 234 499-754 87-393 (461)
412 PF15390 DUF4613: Domain of un 95.8 0.27 5.9E-06 54.5 15.2 159 840-1006 20-188 (671)
413 TIGR03074 PQQ_membr_DH membran 95.7 2.9 6.4E-05 50.6 25.0 204 809-1013 194-486 (764)
414 KOG4499 Ca2+-binding protein R 95.7 2.4 5.1E-05 41.5 20.3 100 739-849 162-263 (310)
415 PF05096 Glu_cyclase_2: Glutam 95.6 3.1 6.6E-05 42.5 22.7 192 735-952 45-250 (264)
416 TIGR02604 Piru_Ver_Nterm putat 95.6 2.9 6.3E-05 46.5 23.5 139 799-949 14-200 (367)
417 KOG4441 Proteins containing BT 95.6 0.93 2E-05 53.2 20.0 236 807-1068 282-555 (571)
418 PF12894 Apc4_WD40: Anaphase-p 95.5 0.06 1.3E-06 38.3 6.2 32 395-426 10-41 (47)
419 PF12894 Apc4_WD40: Anaphase-p 95.5 0.035 7.5E-07 39.5 4.8 33 335-369 12-44 (47)
420 PF10168 Nup88: Nuclear pore c 95.5 3.6 7.8E-05 49.4 24.4 94 797-913 83-180 (717)
421 KOG2444 WD40 repeat protein [G 95.3 0.048 1E-06 52.8 6.8 102 812-913 72-178 (238)
422 PRK13684 Ycf48-like protein; P 95.3 5.2 0.00011 43.7 23.4 154 839-1002 172-329 (334)
423 KOG4499 Ca2+-binding protein R 95.2 0.3 6.5E-06 47.4 11.5 113 338-463 161-275 (310)
424 PF14727 PHTB1_N: PTHB1 N-term 94.8 8.6 0.00019 42.8 33.1 280 343-655 33-363 (418)
425 PF10168 Nup88: Nuclear pore c 94.6 7.5 0.00016 46.8 23.8 31 624-654 148-181 (717)
426 KOG2444 WD40 repeat protein [G 94.4 0.15 3.2E-06 49.5 7.4 106 407-518 69-178 (238)
427 PF15390 DUF4613: Domain of un 94.3 11 0.00025 42.4 27.7 58 937-994 343-404 (671)
428 KOG2280 Vacuolar assembly/sort 94.2 3.4 7.4E-05 47.7 18.5 200 804-1015 38-257 (829)
429 TIGR03118 PEPCTERM_chp_1 conse 94.2 7.9 0.00017 40.0 23.5 207 800-1014 24-289 (336)
430 KOG1916 Nuclear protein, conta 94.1 0.097 2.1E-06 60.4 6.4 131 329-485 127-282 (1283)
431 PHA03098 kelch-like protein; P 93.8 2.4 5.1E-05 50.2 17.9 153 498-655 342-514 (534)
432 COG1520 FOG: WD40-like repeat 93.7 9.5 0.0002 42.6 21.7 202 806-1015 65-279 (370)
433 PF12234 Rav1p_C: RAVE protein 93.7 1.7 3.6E-05 50.6 15.3 112 443-562 31-155 (631)
434 PF03022 MRJP: Major royal jel 93.5 10 0.00023 40.2 20.2 188 801-992 3-253 (287)
435 KOG3630 Nuclear pore complex, 93.5 1 2.2E-05 54.0 13.3 146 798-949 100-260 (1405)
436 KOG2377 Uncharacterized conser 93.5 2.2 4.8E-05 45.9 14.4 145 842-993 25-172 (657)
437 PHA03098 kelch-like protein; P 93.2 3.3 7.2E-05 49.0 18.0 188 808-1009 293-516 (534)
438 PF12234 Rav1p_C: RAVE protein 93.2 1.1 2.5E-05 51.8 13.2 118 330-471 25-154 (631)
439 KOG1898 Splicing factor 3b, su 93.0 27 0.00058 42.4 38.7 121 938-1070 939-1061(1205)
440 KOG4460 Nuclear pore complex, 92.9 1.8 3.9E-05 47.4 13.1 108 974-1082 103-223 (741)
441 TIGR02604 Piru_Ver_Nterm putat 92.9 3.7 8.1E-05 45.6 16.6 147 883-1049 14-205 (367)
442 COG4590 ABC-type uncharacteriz 92.7 1.8 3.9E-05 46.4 12.4 158 797-964 219-389 (733)
443 PF14761 HPS3_N: Hermansky-Pud 92.3 8.6 0.00019 37.8 15.6 112 800-914 19-165 (215)
444 PF08728 CRT10: CRT10; InterP 92.3 4.2 9.1E-05 47.8 16.0 173 810-1003 49-245 (717)
445 TIGR03118 PEPCTERM_chp_1 conse 92.0 17 0.00037 37.7 23.2 214 443-662 24-289 (336)
446 COG3823 Glutamine cyclotransfe 92.0 11 0.00024 36.4 15.4 175 457-640 58-247 (262)
447 COG4257 Vgb Streptogramin lyas 91.9 16 0.00034 37.1 18.6 195 841-1064 63-267 (353)
448 KOG1900 Nuclear pore complex, 91.7 10 0.00022 47.1 18.6 146 859-1008 96-277 (1311)
449 KOG2377 Uncharacterized conser 91.6 1.2 2.5E-05 47.9 9.6 103 333-455 65-167 (657)
450 PLN00033 photosystem II stabil 91.5 27 0.00058 38.9 27.8 151 843-1001 242-396 (398)
451 COG3292 Predicted periplasmic 91.5 15 0.00033 41.3 18.0 272 336-648 166-443 (671)
452 PF10313 DUF2415: Uncharacteri 91.3 0.73 1.6E-05 31.7 5.2 32 397-428 1-35 (43)
453 PHA02790 Kelch-like protein; P 91.2 10 0.00022 44.0 18.0 185 808-1008 270-474 (480)
454 COG3823 Glutamine cyclotransfe 91.1 10 0.00022 36.6 14.2 100 809-913 55-159 (262)
455 KOG1916 Nuclear protein, conta 91.1 0.25 5.5E-06 57.2 4.5 177 819-1003 153-373 (1283)
456 PF03022 MRJP: Major royal jel 91.0 19 0.00041 38.2 18.4 167 466-640 35-253 (287)
457 PF10313 DUF2415: Uncharacteri 90.8 0.85 1.8E-05 31.4 5.1 32 840-871 1-34 (43)
458 PF14781 BBS2_N: Ciliary BBSom 90.4 12 0.00027 33.5 13.3 121 339-479 3-131 (136)
459 COG1520 FOG: WD40-like repeat 90.1 36 0.00077 38.0 23.2 199 411-619 71-279 (370)
460 PHA02790 Kelch-like protein; P 90.0 14 0.0003 42.8 17.8 148 498-654 318-472 (480)
461 cd08044 TAF5_NTD2 TAF5_NTD2 is 90.0 0.33 7.1E-06 44.5 3.6 61 72-132 29-89 (133)
462 KOG3630 Nuclear pore complex, 89.9 4.6 0.0001 48.9 13.3 101 799-901 156-262 (1405)
463 PF13449 Phytase-like: Esteras 89.8 17 0.00037 39.5 17.4 163 839-1005 19-250 (326)
464 PF10214 Rrn6: RNA polymerase 89.6 62 0.0013 40.1 29.0 168 837-1006 77-278 (765)
465 PF07250 Glyoxal_oxid_N: Glyox 89.5 17 0.00036 37.1 15.5 146 513-661 50-206 (243)
466 KOG1900 Nuclear pore complex, 89.4 8 0.00017 47.9 15.1 172 318-518 63-273 (1311)
467 PF07676 PD40: WD40-like Beta 89.3 1.1 2.4E-05 30.5 5.0 33 330-362 4-38 (39)
468 PF14761 HPS3_N: Hermansky-Pud 89.3 23 0.00049 35.0 15.5 146 853-1004 29-214 (215)
469 TIGR03606 non_repeat_PQQ dehyd 88.7 48 0.001 37.5 28.2 67 329-408 24-90 (454)
470 PF05935 Arylsulfotrans: Aryls 88.7 33 0.00072 39.6 19.4 145 860-1016 126-313 (477)
471 COG4257 Vgb Streptogramin lyas 88.6 30 0.00065 35.2 22.2 226 695-964 70-308 (353)
472 PF13449 Phytase-like: Esteras 88.6 41 0.00089 36.6 22.8 151 797-949 18-231 (326)
473 COG5167 VID27 Protein involved 88.5 23 0.00051 39.1 16.2 152 444-607 469-631 (776)
474 PF08728 CRT10: CRT10; InterP 88.5 22 0.00048 42.1 17.5 111 800-912 102-246 (717)
475 KOG2063 Vacuolar assembly/sort 88.4 26 0.00055 42.8 18.3 250 740-1013 20-277 (877)
476 PF04494 TFIID_90kDa: WD40 ass 88.4 0.48 1E-05 44.0 3.5 57 72-128 40-96 (142)
477 PLN00033 photosystem II stabil 88.2 48 0.001 37.0 32.4 150 885-1054 241-396 (398)
478 TIGR03548 mutarot_permut cycli 88.0 45 0.00097 36.3 20.3 112 893-1009 72-199 (323)
479 PF12657 TFIIIC_delta: Transcr 87.8 2.9 6.2E-05 40.5 8.7 31 397-427 86-122 (173)
480 PF07569 Hira: TUP1-like enhan 87.8 2.2 4.8E-05 43.0 8.1 73 890-962 18-96 (219)
481 KOG3616 Selective LIM binding 87.7 13 0.00028 42.7 14.3 78 395-481 13-90 (1636)
482 KOG1983 Tomosyn and related SN 87.7 15 0.00032 46.3 16.7 68 935-1008 201-268 (993)
483 KOG4659 Uncharacterized conser 87.6 87 0.0019 39.3 32.2 23 733-755 660-682 (1899)
484 PF05935 Arylsulfotrans: Aryls 87.5 61 0.0013 37.5 25.6 192 457-655 117-370 (477)
485 PRK13613 lipoprotein LpqB; Pro 87.4 41 0.00089 39.7 19.1 189 800-998 364-576 (599)
486 KOG2247 WD40 repeat-containing 87.3 0.09 2E-06 56.5 -2.2 144 739-908 39-184 (615)
487 PRK14131 N-acetylneuraminic ac 87.0 56 0.0012 36.5 20.8 40 602-643 314-353 (376)
488 PF07569 Hira: TUP1-like enhan 86.8 4.2 9E-05 41.1 9.4 73 938-1011 16-102 (219)
489 KOG2280 Vacuolar assembly/sort 86.2 42 0.00091 39.3 17.4 199 416-634 62-271 (829)
490 PF11725 AvrE: Pathogenicity f 86.0 1.2E+02 0.0027 39.4 22.8 150 332-518 360-517 (1774)
491 TIGR03547 muta_rot_YjhT mutatr 85.9 60 0.0013 35.7 22.0 93 809-903 17-128 (346)
492 COG4590 ABC-type uncharacteriz 85.6 3.1 6.8E-05 44.6 7.9 176 829-1012 210-394 (733)
493 TIGR03548 mutarot_permut cycli 85.4 60 0.0013 35.3 22.1 70 498-567 123-198 (323)
494 PF02333 Phytase: Phytase; In 85.1 64 0.0014 35.4 19.8 199 743-961 65-290 (381)
495 TIGR03606 non_repeat_PQQ dehyd 85.0 24 0.00052 39.8 14.9 113 882-995 29-166 (454)
496 COG5167 VID27 Protein involved 84.9 16 0.00035 40.2 12.8 151 844-1004 471-632 (776)
497 PF12657 TFIIIC_delta: Transcr 83.2 6.4 0.00014 38.1 8.7 31 883-913 86-122 (173)
498 COG3292 Predicted periplasmic 82.7 94 0.002 35.4 23.5 72 395-474 163-234 (671)
499 PF12768 Rax2: Cortical protei 82.2 29 0.00062 36.5 13.3 101 466-568 17-128 (281)
500 smart00036 CNH Domain found in 81.9 78 0.0017 34.0 26.3 239 742-1012 9-278 (302)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-70 Score=540.74 Aligned_cols=493 Identities=20% Similarity=0.305 Sum_probs=415.6
Q ss_pred hHHHHHHHHHhhhhcCcHHHHHHHHHhcCCChh---HHHHHHHhcCccHHHHHHhhccCccccCccccchhhhHHHHhhh
Q 001386 5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD---MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNF 81 (1088)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Es~~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~ 81 (1088)
+-|++|+++|+|..+||..|+.+||.|||+.++ ...|.+++++|+|+.++..+..+...+ ......+.|++.||+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~d-e~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFED-ERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcc-hhhhHHHHHHHHHHHH
Confidence 568999999999999999999999999999775 899999999999999999988774333 4444569999999999
Q ss_pred hhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccccccccccccccCCChHHHHHHHHHHHhhcccCcccccc
Q 001386 82 FEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGK 161 (1088)
Q Consensus 82 lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~~~ 161 (1088)
||++..|..-.|+.+||+...++. ++.++|++|+.-+..++.....+... .......|++|+++|+++|||+++
T Consensus 96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il---- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL---- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc----
Confidence 999999999999999999888885 57788999988776654433332221 112356899999999999999999
Q ss_pred ccCCCcchHHHHHHHHHHHHHHHhhCCCCCCCCCCCcccccccCCCCCCCCcCCCCCCCCCCCCCCCCCCccccCCCCCC
Q 001386 162 LKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLT 241 (1088)
Q Consensus 162 ~~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~~l~~d~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1088)
+|++||+.||+||++||+++|.||| +.+..|||.||.|++ .++
T Consensus 170 -----lP~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~------~qi------------------------- 212 (519)
T KOG0293|consen 170 -----LPKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGR------LQI------------------------- 212 (519)
T ss_pred -----CChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCc------ccC-------------------------
Confidence 9999999999999999999999999 667799999999988 333
Q ss_pred CccccccccCCCCCCCccccccCCCCCCCCcCCccccccccccccceecCccCCCcCCCCCCCchhhhcccccCCcccCC
Q 001386 242 DSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSD 321 (1088)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~fsP~~s~~~~~~~~~~~~~~~~ 321 (1088)
T Consensus 213 -------------------------------------------------------------------------------- 212 (519)
T KOG0293|consen 213 -------------------------------------------------------------------------------- 212 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CchhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEE
Q 001386 322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1088)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 401 (1088)
|....++|..|+++||.+.||++|+ +||+++.|.+..||++.....+.- ...+.+|..+|..
T Consensus 213 -p~qt~qil~~htdEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~~kl----------------~~tlvgh~~~V~y 274 (519)
T KOG0293|consen 213 -PSQTWQILQDHTDEVWFLQFSHNGK-YLASASKDSTAIIWIVVYDVHFKL----------------KKTLVGHSQPVSY 274 (519)
T ss_pred -CchhhhhHhhCCCcEEEEEEcCCCe-eEeeccCCceEEEEEEecCcceee----------------eeeeecccCceEE
Confidence 2333467899999999999999999 699999999999999976654221 1238899999999
Q ss_pred EEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe
Q 001386 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1088)
Q Consensus 402 l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~ 481 (1088)
+.||||.++|++++.+..+.+||+.+|....... .+|...+.+++|.|||. .+++|+.|+++..||++ |..+...
T Consensus 275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~wdlD-gn~~~~W 349 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIMWDLD-GNILGNW 349 (519)
T ss_pred EEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEEecCC-cchhhcc
Confidence 9999999999999999999999999998766432 24668999999999999 79999999999999965 4445555
Q ss_pred ccCC-ccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEE
Q 001386 482 EGHG-APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1088)
Q Consensus 482 ~~~~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 560 (1088)
++-. ..|.++++ ..||+++++.+.|..|++++.++...+. +.....+|++++.|.||+++++.-. +..+.+|
T Consensus 350 ~gvr~~~v~dlai--t~Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k~~LvnL~----~qei~LW 422 (519)
T KOG0293|consen 350 EGVRDPKVHDLAI--TYDGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGKLALVNLQ----DQEIHLW 422 (519)
T ss_pred cccccceeEEEEE--cCCCcEEEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCcEEEEEcc----cCeeEEe
Confidence 5433 55888888 5688999999999999999988766554 3344568999999999999998765 3449999
Q ss_pred eCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec-CCCEEEE
Q 001386 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAV 639 (1088)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~ 639 (1088)
|++....++.+.||......|.++.-..+..++++|++|+.|+||+..+|+++..+.+|.. .|++++|+| +..++|+
T Consensus 423 Dl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNcVswNP~~p~m~AS 500 (519)
T KOG0293|consen 423 DLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCVSWNPADPEMFAS 500 (519)
T ss_pred ecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeEEecCCCCHHHhhc
Confidence 9999999999999996666677665556678999999999999999999999999998865 699999999 6678999
Q ss_pred EeCCCcEEEEeCCC
Q 001386 640 IANENRIKILETPE 653 (1088)
Q Consensus 640 ~~~dg~i~iwd~~~ 653 (1088)
+++||+|+||....
T Consensus 501 asDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 501 ASDDGTIRIWGPSD 514 (519)
T ss_pred cCCCCeEEEecCCc
Confidence 99999999997663
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.7e-63 Score=469.68 Aligned_cols=491 Identities=18% Similarity=0.272 Sum_probs=403.8
Q ss_pred hhHHHHHHHHHhhhhcCcHHHHHHHHHhcCCChh----HHHHHHHhcCccHHHHHHhhccCccccCccccchhhhHHHHh
Q 001386 4 LNKDLVFLILQFLNEEGFTESAHMLERESRFYFD----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQ 79 (1088)
Q Consensus 4 ~~~~~~~li~q~L~~~g~~~s~~~L~~Es~~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q 79 (1088)
-..||||||.|||+|+.+++++++||+|+++++| ++.|-+.|.+|+||.+++.+++| +++.+-+..||||
T Consensus 6 essdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYEq 79 (508)
T KOG0275|consen 6 ESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYEQ 79 (508)
T ss_pred ecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHHH
Confidence 4568999999999999999999999999999997 89999999999999999999998 5566678889999
Q ss_pred hhhhhhcCCCHHHHHHHHHhhcccc---CCCCHHHHHHHHHhhcccccccccccccccCCChHHHHHHHHHHHhhcccCc
Q 001386 80 NFFEALDGHDIAKALNILKKDLKDF---APGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANP 156 (1088)
Q Consensus 80 ~~lEll~~~~~~~a~~~l~~~l~~~---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~ 156 (1088)
..|||+|.++...|..+||. ..|+ .+.++++|-+|+.|+..+.++..+.+. +..++.|+. .|.+.+..++
T Consensus 80 ivlEliELREL~tAR~~lRQ-TdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~---dssKEkrRa---~IAQ~ls~EV 152 (508)
T KOG0275|consen 80 IVLELIELRELGTARSLLRQ-TDPMIMLKQIQPERYIRLENLLNRSYFDPREAYG---DSSKEKRRA---VIAQALSGEV 152 (508)
T ss_pred HHHHHHHHHhhhHHHHHHhc-cCceehhhccChHHHHHHHHHhcccccChhhhcC---cchHHHHHH---HHHHHhcCce
Confidence 99999999999999999997 4444 566899999999999999999888733 246777774 4444444433
Q ss_pred cccccccCCCcchHHHHHHHHHHHHHHHhhCCCCCCCCCCCcccccccCCCCCCCCcCCCCCCCCCCCCCCCCCCccccC
Q 001386 157 ILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFS 236 (1088)
Q Consensus 157 ~~~~~~~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~~l~~d~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (1088)
- .+||+||+.||+|||+||.++.+.|..+. . ..|+...
T Consensus 153 ~--------VVppSRLlaLlGQaLKWQqHQGLLPPGt~--i------------------------DLFRGkA-------- 190 (508)
T KOG0275|consen 153 H--------VVPPSRLLALLGQALKWQQHQGLLPPGTT--I------------------------DLFRGKA-------- 190 (508)
T ss_pred E--------EcChHHHHHHHHHHhhhHhhcCCCCCCce--e------------------------eeccchh--------
Confidence 3 28999999999999999999877664210 0 1111100
Q ss_pred CCCCCCccccccccCCCCCCCccccccCCCCCCCCcCCccccccccccccceecCccCCCcCCCCCCCchhhhcccccCC
Q 001386 237 SSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGE 316 (1088)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~fsP~~s~~~~~~~~~~~ 316 (1088)
. ++ ...+.+||.+..
T Consensus 191 --------------A----------~K-------------------~~~Ee~~Pt~l~---------------------- 205 (508)
T KOG0275|consen 191 --------------A----------MK-------------------DQEEERYPTQLA---------------------- 205 (508)
T ss_pred --------------h----------hh-------------------hhHhhhchHHhh----------------------
Confidence 0 00 001123444432
Q ss_pred cccCCCchhheeecc-cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCC
Q 001386 317 TSFSDFPKTVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 395 (1088)
Q Consensus 317 ~~~~~~p~~~~~~l~-~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h 395 (1088)
+.++ |.++.+.|..|||||+ +|++|+.||.|.+||..+|+..+...++.-| -+--+
T Consensus 206 -----------r~IKFg~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd-----------~fMMm 262 (508)
T KOG0275|consen 206 -----------RSIKFGQKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD-----------NFMMM 262 (508)
T ss_pred -----------hheecccccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhhhhc-----------ceeec
Confidence 2222 5566899999999999 7999999999999999999987654433211 14457
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC
Q 001386 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1088)
Q Consensus 396 ~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~ 475 (1088)
..+|.|+.||.|...||+|+.||.|+||.+.+|.+++.+. +.|+..|+|+.||.|+. .+++++.|.++++.-+.+|
T Consensus 263 d~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd--rAHtkGvt~l~FSrD~S--qiLS~sfD~tvRiHGlKSG 338 (508)
T KOG0275|consen 263 DDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD--RAHTKGVTCLSFSRDNS--QILSASFDQTVRIHGLKSG 338 (508)
T ss_pred ccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh--hhhccCeeEEEEccCcc--hhhcccccceEEEeccccc
Confidence 8999999999999999999999999999999999998542 38999999999999999 6899999999999999999
Q ss_pred ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCC--CceEEEEEccC-CCEEEEEeeCCC
Q 001386 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTRMAYSAN-GRRLFSCGTSKE 552 (1088)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~-g~~l~~~~~~~~ 552 (1088)
++++.++||...|+...| .++|..+++++.||+|++|+..+.++..++...+ .+|.++..-|. -..+++|..
T Consensus 339 K~LKEfrGHsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr--- 413 (508)
T KOG0275|consen 339 KCLKEFRGHSSYVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR--- 413 (508)
T ss_pred hhHHHhcCccccccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC---
Confidence 999999999999999998 5688999999999999999999999888776544 36777777774 456777754
Q ss_pred CceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec
Q 001386 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1088)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1088)
.+++++.++. |+.++.+......++...+++.+|.|.++++.++|+.++.|...+|++..++..|.. .+..++-+|
T Consensus 414 -sntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk--dvIGl~HHP 489 (508)
T KOG0275|consen 414 -SNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK--DVIGLTHHP 489 (508)
T ss_pred -CCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc--cccccccCc
Confidence 5568898874 778888876665667788889999999999999999999999999999999998765 578899999
Q ss_pred CCCEEEEEeCCCcEEEEe
Q 001386 633 NGTLLAVIANENRIKILE 650 (1088)
Q Consensus 633 ~~~~l~~~~~dg~i~iwd 650 (1088)
..+++|+-+.||.+++|.
T Consensus 490 HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 490 HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccchhhhhcccchhhhcC
Confidence 999999999999999994
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.5e-59 Score=495.97 Aligned_cols=577 Identities=18% Similarity=0.249 Sum_probs=493.9
Q ss_pred eeecCCCCeEEEEEcccCcEEEEecCCCcce-eeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCC
Q 001386 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 418 (1088)
Q Consensus 340 v~~spdg~~lla~g~~dg~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg 418 (1088)
++||++|+ +|++... ..|.+-|+.+++.. ... -.+....+++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~-~L~t~~~-d~Vi~idv~t~~~~l~s~------------------~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTACG-DRVIIIDVATGSIALPSG------------------SNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEecC-ceEEEEEccCCceecccC------------------CccchhhhheeeecCCccEEEEeeccc
Confidence 89999999 5777653 56889999999873 211 233567899999999999999999999
Q ss_pred EEEEEEccCCCcccceeEecc-CCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeC
Q 001386 419 IVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 497 (1088)
Q Consensus 419 ~i~vwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 497 (1088)
.+++|++.+|+.++ .++. |++||.-++|+|.+. .+++|+.|+.++|||+..+.+.+.|+||.+.|.++.|++..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998877 5655 999999999999997 89999999999999999999999999999999999999998
Q ss_pred CceEEEEEecCCeEEEEECCCCCc-eEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEecccc
Q 001386 498 NIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 576 (1088)
Q Consensus 498 ~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~ 576 (1088)
+...|++|..|+++++||+..... ......|...|++++|++|+..+++++. +..+.+||..+.+..++++...
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 888999999999999999996554 7788889999999999999999999986 5569999998877777776654
Q ss_pred ccccEEEEEEeCC-----CCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeC
Q 001386 577 QHNSVSVVHFDTA-----KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1088)
Q Consensus 577 ~~~~v~~~~~~~~-----~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1088)
.+-++.+-++ +.++++++.+|.+++||.++++++........ +.+..+...+....++..+.|..+.++|.
T Consensus 235 ---~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~-~e~~~~~~~~~~~~~l~vtaeQnl~l~d~ 310 (775)
T KOG0319|consen 235 ---SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDS-EEIDHLLAIESMSQLLLVTAEQNLFLYDE 310 (775)
T ss_pred ---heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCc-hhhhcceeccccCceEEEEccceEEEEEc
Confidence 6777777777 77999999999999999999998877665432 23566666665666777778889999999
Q ss_pred CCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCc
Q 001386 652 PESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSK 731 (1088)
Q Consensus 652 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 731 (1088)
++.+....+-+..+.|..+.+- .|+.+.++.++..+.+|+++.. ...|.. + .
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~l---------------------G~e~~~laVATNs~~lr~y~~~---~~~c~i--i--~ 362 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFL---------------------GPEESHLAVATNSPELRLYTLP---TSYCQI--I--P 362 (775)
T ss_pred cccEEehhhcCCchhheeeeec---------------------CCccceEEEEeCCCceEEEecC---CCceEE--E--e
Confidence 9999999999999999888877 5778899999999999999654 223332 2 3
Q ss_pred cccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCC-
Q 001386 732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND- 810 (1088)
Q Consensus 732 ~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg- 810 (1088)
+|...|.++....+|..+++++.|.++++|.++.+.. .....-...+|...|.+++++..+
T Consensus 363 GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~------------------~~~~~a~~~gH~~svgava~~~~~a 424 (775)
T KOG0319|consen 363 GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS------------------KSLCVAQANGHTNSVGAVAGSKLGA 424 (775)
T ss_pred CchhheeeeeecccCcEEEEecCCceEEEEEecCCcc------------------hhhhhhhhcccccccceeeecccCc
Confidence 5999999999888888999999999999999843322 111111223699999999998765
Q ss_pred CEEEEEe-CCcEEEEEcCCceeE---------EEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecc
Q 001386 811 AYLFSAS-GGVISLYIVMTFKTI---------LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 880 (1088)
Q Consensus 811 ~~l~~~~-dg~i~iwd~~~~~~~---------~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~ 880 (1088)
.++++++ |.++++|++...+.. .+...|...|.|++++| +.+++|+|+.|.+.+||+++....+..|.|
T Consensus 425 sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsG 503 (775)
T KOG0319|consen 425 SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSG 503 (775)
T ss_pred cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeC
Confidence 5777777 999999999762211 12347899999999999 889999999999999999999999999999
Q ss_pred ccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEE
Q 001386 881 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYE 959 (1088)
Q Consensus 881 h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd 959 (1088)
|+..|.++.|+|..+.|||+|.|++|+||.+++ ..|++.++||.. .|..+.|-.+|+.|++ +.||-+++|+
T Consensus 504 H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-----fSClkT~eGH~~---aVlra~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 504 HTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-----FSCLKTFEGHTS---AVLRASFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred CccceEEEEeccccceeEeccCCceEEEEEecc-----ceeeeeecCccc---eeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence 999999999999999999999999999999999 569999999987 8999999999999999 7999999999
Q ss_pred cCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC
Q 001386 960 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1006 (1088)
Q Consensus 960 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~ 1006 (1088)
+++++|..+ +.+|..+|.+++-++++.+++||+.||.|.+|.=.|.
T Consensus 576 ikt~eC~~t-lD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 576 IKTNECEMT-LDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred ccchhhhhh-hhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 999999999 6699999999999999999999999999999975443
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.6e-56 Score=471.97 Aligned_cols=585 Identities=14% Similarity=0.180 Sum_probs=475.8
Q ss_pred cCCCCCCCchhhhcccccCCcccCCCchhh-e-eecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeec
Q 001386 297 IPDYSPKSSLKKEMFQSFGETSFSDFPKTV-A-QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRN 374 (1088)
Q Consensus 297 ~~~fsP~~s~~~~~~~~~~~~~~~~~p~~~-~-~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~ 374 (1088)
-..|++++..+.-.+.... ..++.-+... + ..-.+-.+.+++++.+||++ +|++++..+.+++|++.+|+.++.
T Consensus 24 ~~~~s~nG~~L~t~~~d~V-i~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk~irs-- 99 (775)
T KOG0319|consen 24 PVAWSSNGQHLYTACGDRV-IIIDVATGSIALPSGSNEDEDEITALALTPDEE-VLVTASRSQLLRVWSLPTGKLIRS-- 99 (775)
T ss_pred ceeECCCCCEEEEecCceE-EEEEccCCceecccCCccchhhhheeeecCCcc-EEEEeeccceEEEEEcccchHhHh--
Confidence 3677888877766554210 0111111111 1 11124566899999999998 689999999999999999988765
Q ss_pred eeeeeeccccccceeeeecC-CCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCC
Q 001386 375 FKVWDIGACSMLFKTALVRD-PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPC 453 (1088)
Q Consensus 375 ~~~~d~~~~~~~~~~~~~~~-h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~ 453 (1088)
++. |++||.-++|+|.|..||+|+.|+.++|||+..+.+.. .|+||.+.|.++.|.|+-
T Consensus 100 -----------------wKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 100 -----------------WKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred -----------------HhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCcc
Confidence 334 99999999999999999999999999999999987665 799999999999999998
Q ss_pred CcEEEEEEeCCCcEEEEeCCCCc-eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCce
Q 001386 454 KQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGC 532 (1088)
Q Consensus 454 ~~l~l~s~s~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 532 (1088)
....|++|..|+++++||+.++. |+..+..|.+.|+++++.+ |+..+++++.|..+.+||+...+.....+. ...+
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~-ye~~ 236 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLPL-YESL 236 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeecc--CCceEEEeccCcEEEEeehhhhhhhheech-hhhe
Confidence 76678999999999999999654 5888999999999999954 678999999999999999965544443332 2345
Q ss_pred EEEEEccC-----CCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 001386 533 TRMAYSAN-----GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1088)
Q Consensus 533 ~~~~~s~~-----g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1088)
.++.+-++ |.++++++. ++.+++||..+++++....... ...+..+...+....++..+.|..+.++|.
T Consensus 237 E~vv~l~~~~~~~~~~~~TaG~----~g~~~~~d~es~~~~~~~~~~~--~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~ 310 (775)
T KOG0319|consen 237 ESVVRLREELGGKGEYIITAGG----SGVVQYWDSESGKCVYKQRQSD--SEEIDHLLAIESMSQLLLVTAEQNLFLYDE 310 (775)
T ss_pred eeEEEechhcCCcceEEEEecC----CceEEEEecccchhhhhhccCC--chhhhcceeccccCceEEEEccceEEEEEc
Confidence 66666666 678888875 6679999999998876655443 233666666666777888888999999999
Q ss_pred CCCeeeEEEeCCCCCCCCceEEEe-cCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCC
Q 001386 608 NKVQLLTTIDAGGGLPENPRICFN-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 686 (1088)
Q Consensus 608 ~~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~ 686 (1088)
++.+....+-+. ...|..++|- |+.++++++++.+.+++|+..+..+. .+.+|.+.|.++...
T Consensus 311 ~~l~i~k~ivG~--ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~------------- 374 (775)
T KOG0319|consen 311 DELTIVKQIVGY--NDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVW------------- 374 (775)
T ss_pred cccEEehhhcCC--chhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeec-------------
Confidence 999988888754 3468888865 67899999999999999998877665 888999999888743
Q ss_pred ceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCc-eEEEeccccceEEEEccC
Q 001386 687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLMWRWPR 765 (1088)
Q Consensus 687 ~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~~~dg~v~iw~~~~ 765 (1088)
..|.++++++.|+++++|.++..... ....-...+|.+.|.+++++..+. ++++++.|+++++|+++.
T Consensus 375 ---------~~g~llat~sKD~svilWr~~~~~~~--~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~ 443 (775)
T KOG0319|consen 375 ---------SSGDLLATGSKDKSVILWRLNNNCSK--SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPK 443 (775)
T ss_pred ---------ccCcEEEEecCCceEEEEEecCCcch--hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCC
Confidence 45678999999999999998322111 111123367999999999987664 678889999999999987
Q ss_pred CCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEE
Q 001386 766 NDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATS 844 (1088)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~ 844 (1088)
.+.... ............|...|+|++++|+.+++|+|+ |.+.+||+++.+....++.+|...+.+
T Consensus 444 s~~~~~-------------~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~ 510 (775)
T KOG0319|consen 444 SKETAF-------------PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWC 510 (775)
T ss_pred cccccc-------------cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEE
Confidence 433111 112222233446999999999999999999999 999999999999999999999999999
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec
Q 001386 845 LAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT 924 (1088)
Q Consensus 845 l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~ 924 (1088)
+.|+| ..+.+|++|.|++|+||.+.+..++++|.||+..|..+.|-.+|..|+|++.||.|++|+++++ .|...
T Consensus 511 V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~-----eC~~t 584 (775)
T KOG0319|consen 511 VSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN-----ECEMT 584 (775)
T ss_pred EEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch-----hhhhh
Confidence 99999 7899999999999999999999999999999999999999999999999999999999999994 58888
Q ss_pred CCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcc
Q 001386 925 PDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEEL 963 (1088)
Q Consensus 925 ~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~ 963 (1088)
++.|.. .|++++.+|++.++++ +.|+.|.+|.-.|.
T Consensus 585 lD~H~D---rvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 585 LDAHND---RVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred hhhccc---eeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 898887 8999999999999998 68999999975544
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6.1e-52 Score=422.44 Aligned_cols=573 Identities=15% Similarity=0.193 Sum_probs=461.1
Q ss_pred eeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCE
Q 001386 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 419 (1088)
Q Consensus 340 v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~ 419 (1088)
+--.|.|..+|.+.+ ..|.+-++++...... +.+|..+++-..|||.|.|+|+|...|.
T Consensus 24 ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~~i-------------------YtEH~~~vtVAkySPsG~yiASGD~sG~ 82 (603)
T KOG0318|consen 24 IGGDPKGDNILYTNG--KSVIIRNIDNPASVDI-------------------YTEHAHQVTVAKYSPSGFYIASGDVSGK 82 (603)
T ss_pred eccCCCCCeEEEeCC--CEEEEEECCCccceee-------------------eccccceeEEEEeCCCceEEeecCCcCc
Confidence 344677887887765 6788888887765433 7889999999999999999999999999
Q ss_pred EEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEe--CCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeC
Q 001386 420 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 497 (1088)
Q Consensus 420 i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 497 (1088)
|+|||....+.+- ..+++...++|..++|++|+++ ++..+ .++-.+++-+++|..+..+.||...|+++.|-|+.
T Consensus 83 vRIWdtt~~~hiL-Knef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsR 159 (603)
T KOG0318|consen 83 VRIWDTTQKEHIL-KNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSR 159 (603)
T ss_pred EEEEeccCcceee-eeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCC
Confidence 9999998744322 2256778899999999999995 44433 33344445556888899999999999999997764
Q ss_pred CceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccc
Q 001386 498 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577 (1088)
Q Consensus 498 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~ 577 (1088)
. -.+++|+.|++|.+|+=..-+-...+..|..-|.++.|+|||.++++++. ++.+++||-.+|+.+..+.....|
T Consensus 160 P-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~aH 234 (603)
T KOG0318|consen 160 P-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSDAH 234 (603)
T ss_pred c-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCCCc
Confidence 3 57999999999999977666667778888889999999999999999987 555999999999999999966666
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCC-CCceEEEecCCCEEEEEeCCCcEEEEeCCCCCc
Q 001386 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP-ENPRICFNKNGTLLAVIANENRIKILETPESNS 656 (1088)
Q Consensus 578 ~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 656 (1088)
.+.|.+++|+||+..+++++.|.+++|||+.+.+++.++....... .-..+.|. ...|++.+.+|.|.+++......
T Consensus 235 kGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~ 312 (603)
T KOG0318|consen 235 KGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSV 312 (603)
T ss_pred cccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCCh
Confidence 6999999999999999999999999999999999999998664421 12234444 56899999999999999999999
Q ss_pred ccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCcccccc
Q 001386 657 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK 736 (1088)
Q Consensus 657 ~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 736 (1088)
+..+.+|...|++++++ ++++++++++.||.|.-|+...+...+ +...+|...
T Consensus 313 ~~~i~GHnK~ITaLtv~----------------------~d~~~i~SgsyDG~I~~W~~~~g~~~~-----~~g~~h~nq 365 (603)
T KOG0318|consen 313 LKVISGHNKSITALTVS----------------------PDGKTIYSGSYDGHINSWDSGSGTSDR-----LAGKGHTNQ 365 (603)
T ss_pred hheecccccceeEEEEc----------------------CCCCEEEeeccCceEEEEecCCccccc-----cccccccce
Confidence 99999999999999998 678999999999999999977554433 333568999
Q ss_pred EEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEE
Q 001386 737 ISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA 816 (1088)
Q Consensus 737 i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 816 (1088)
|.+++.+..+. +++.+.|.++++.++..+.... ... .+ ......+++..+++.+++.+
T Consensus 366 I~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~--------------~~~--~~-----lg~QP~~lav~~d~~~avv~ 423 (603)
T KOG0318|consen 366 IKGMAASESGE-LFTIGWDDTLRVISLKDNGYTK--------------SEV--VK-----LGSQPKGLAVLSDGGTAVVA 423 (603)
T ss_pred EEEEeecCCCc-EEEEecCCeEEEEecccCcccc--------------cce--ee-----cCCCceeEEEcCCCCEEEEE
Confidence 99999987666 7888889899988765443210 000 00 23344589999998888888
Q ss_pred eCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceee--eeeccccCCeeEEEECCCC
Q 001386 817 SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI--SKLEGHSKRVTGLVFSDAL 894 (1088)
Q Consensus 817 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~--~~l~~h~~~V~~l~~s~dg 894 (1088)
.++.|.+..-.++ +.++. ..-...+++++| ++..+|+|+.||.|+||.+..+.+. ..+..|.++|+++++|||+
T Consensus 424 ~~~~iv~l~~~~~--~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~ 499 (603)
T KOG0318|consen 424 CISDIVLLQDQTK--VSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDG 499 (603)
T ss_pred ecCcEEEEecCCc--ceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCC
Confidence 8777666652221 12222 334678999999 8999999999999999999876543 3456799999999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeeeeecCC
Q 001386 895 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPIS 973 (1088)
Q Consensus 895 ~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h 973 (1088)
.+||++...+.+.+||+.+.+.... .-.-|.. .|.+++|+|+..++|+ +-|..|.||+++.....-....+|
T Consensus 500 ~yla~~Da~rkvv~yd~~s~~~~~~----~w~FHta---kI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH 572 (603)
T KOG0318|consen 500 AYLAAGDASRKVVLYDVASREVKTN----RWAFHTA---KINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAH 572 (603)
T ss_pred cEEEEeccCCcEEEEEcccCceecc----eeeeeee---eEEEEEeCCCceEEEeccccceEEEEEccChhhheEecccc
Confidence 9999999999999999999764211 1112333 7999999999999999 578999999999877666667889
Q ss_pred CcCEEEEEEeeCCCEEEEEeCCCcEEEEEcC
Q 001386 974 SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1004 (1088)
Q Consensus 974 ~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~ 1004 (1088)
...|+.+.|- |...|++.+.|..|++|++.
T Consensus 573 ~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 573 LGGVNSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence 8889999997 45678999999999999875
No 6
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.7e-51 Score=434.73 Aligned_cols=571 Identities=17% Similarity=0.287 Sum_probs=438.7
Q ss_pred cCCCCCCCchhhhcccccCCcccCCCchhheeecc-cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeece
Q 001386 297 IPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNF 375 (1088)
Q Consensus 297 ~~~fsP~~s~~~~~~~~~~~~~~~~~p~~~~~~l~-~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~ 375 (1088)
-+.|+|++..+.. .-.+...+.++.++.-.||. .+...|.+++.||+|. +|++....|...+-++.....++.++
T Consensus 19 nl~ft~dG~sviS--PvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f~- 94 (893)
T KOG0291|consen 19 NLVFTKDGNSVIS--PVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRFN- 94 (893)
T ss_pred cEEECCCCCEEEe--ccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEEe-
Confidence 3566666432221 11222334455555555554 4556999999999998 66677788999999998888776654
Q ss_pred eeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCc-----ccceeEeccCCCCEEEEEec
Q 001386 376 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVGNVNDLAFS 450 (1088)
Q Consensus 376 ~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~-----~~~~~~~~~h~~~v~~~~~s 450 (1088)
...+|.|+.|||||+++|+|.. +.+.||....... .....++.+|-..|.++.|+
T Consensus 95 -------------------fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws 154 (893)
T KOG0291|consen 95 -------------------FKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWS 154 (893)
T ss_pred -------------------ecCccceEEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEec
Confidence 3478999999999999999854 4599998865432 22345677999999999999
Q ss_pred CCCCcEEEEEEeCCCcEEEEeCCCCce--eEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCC
Q 001386 451 APCKQISVITCGDDKTIKVWDAVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP 528 (1088)
Q Consensus 451 ~d~~~l~l~s~s~d~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 528 (1088)
.|.+ ++++|+.|.++++|+++..+- .+.+.+|...|.++-| ..+...+++.+.||.+.+|..........-. .
T Consensus 155 ~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF--~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~-~ 229 (893)
T KOG0291|consen 155 DDSR--LLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFF--GANSLDLYTVSKDGALFVWTCDLRPPELDKA-E 229 (893)
T ss_pred cCCc--eEEeccccceEEEEEeccccccceEeccCCCcceEEEEe--ccCcceEEEEecCceEEEEEecCCCcccccc-c
Confidence 9999 899999999999999987665 5778999999998877 4455789999999999999876431111000 0
Q ss_pred CCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 001386 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1088)
Q Consensus 529 ~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 608 (1088)
. ..+|.--.-.-.+++....-..|-. ..+.+-. .....+++.+|++..+.+++|-..|...+|.+.
T Consensus 230 k--------d~eg~~d~~~~~~~Eek~~~~~~~k----~~k~~ln--~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP 295 (893)
T KOG0291|consen 230 K--------DEEGSDDEEMDEDGEEKTHKIFWYK----TKKHYLN--QNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELP 295 (893)
T ss_pred c--------cccccccccccccchhhhcceEEEE----EEeeeec--ccccceeeeeccCCceEEEEEecCCeeEEEecC
Confidence 0 0011000000000000000112211 0011111 112579999999999999999999999999999
Q ss_pred CCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCC-CcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCc
Q 001386 609 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 687 (1088)
Q Consensus 609 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~ 687 (1088)
...+++.+..... .|..++|+..|..+|.|+.. |.+.||+..+...
T Consensus 296 ~f~lih~LSis~~--~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY------------------------------- 342 (893)
T KOG0291|consen 296 DFNLIHSLSISDQ--KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY------------------------------- 342 (893)
T ss_pred CceEEEEeecccc--eeeEEEecccCCEEEEcCCccceEEEEEeeccce-------------------------------
Confidence 9999999987644 58999999999999999875 7888888764322
Q ss_pred eeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCC
Q 001386 688 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 767 (1088)
Q Consensus 688 ~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~ 767 (1088)
.+...+|...+.+++++|||+++++|+.||.|++|+
T Consensus 343 ---------------------------------------VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn----- 378 (893)
T KOG0291|consen 343 ---------------------------------------VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWN----- 378 (893)
T ss_pred ---------------------------------------eeeccccccceeeEEECCCCcEEEeccCCCcEEEEe-----
Confidence 223345888999999999999999999999999986
Q ss_pred CCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCC-CeEEE
Q 001386 768 LTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSP-TATSL 845 (1088)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~-~i~~l 845 (1088)
..+|.|+.++.- |...|+.+.|+..|+.+++++ ||+|+.||+..++..+++..+.. ...|+
T Consensus 379 -------------~~SgfC~vTFte----Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscv 441 (893)
T KOG0291|consen 379 -------------TQSGFCFVTFTE----HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCV 441 (893)
T ss_pred -------------ccCceEEEEecc----CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEE
Confidence 456777777653 999999999999999999999 99999999999999999987664 56889
Q ss_pred EEcCCCCcEEEEEeCCC-eEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec
Q 001386 846 AFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT 924 (1088)
Q Consensus 846 ~~sp~d~~~lasg~~dg-~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~ 924 (1088)
+..| .|.++.+|+.|. .|+||++++|+++..+.||.++|.+++|+|++..|||+|.|.+||+||+-.... ..+.++.
T Consensus 442 avD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~-~vEtl~i 519 (893)
T KOG0291|consen 442 AVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG-TVETLEI 519 (893)
T ss_pred EEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCc-eeeeEee
Confidence 9999 789999999887 899999999999999999999999999999999999999999999999976421 1223333
Q ss_pred CCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeeeeec------C-------------CCcCEEEEEEee
Q 001386 925 PDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFP------I-------------SSVPISQATFSC 984 (1088)
Q Consensus 925 ~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~------~-------------h~~~v~~l~fs~ 984 (1088)
.. .+..++|+|||+.|++ +-||+|.+||+..+.....+-. + .....+.+++|+
T Consensus 520 ~s-------dvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa 592 (893)
T KOG0291|consen 520 RS-------DVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSA 592 (893)
T ss_pred cc-------ceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcC
Confidence 22 4889999999999999 6899999999987766633211 1 156789999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001386 985 DCRMVFTSFVDGTLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 985 dg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1013 (1088)
||.++++|+..+.|++|++.++.++.++.
T Consensus 593 DG~~IlAgG~sn~iCiY~v~~~vllkkfq 621 (893)
T KOG0291|consen 593 DGKCILAGGESNSICIYDVPEGVLLKKFQ 621 (893)
T ss_pred CCCEEEecCCcccEEEEECchhheeeeEE
Confidence 99999999999999999999999988776
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.7e-50 Score=408.70 Aligned_cols=539 Identities=12% Similarity=0.191 Sum_probs=432.6
Q ss_pred eeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC
Q 001386 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1088)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~ 406 (1088)
...+.+|...++-..|||.|. ++|+|...|+|+|||....+.+.... +.--.++|..++|+.
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKne-----------------f~v~aG~I~Di~Wd~ 113 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNE-----------------FQVLAGPIKDISWDF 113 (603)
T ss_pred eeeeccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeee-----------------eeecccccccceeCC
Confidence 566789999999999999997 79999999999999998866554333 333568999999999
Q ss_pred CCCEEEEEeCC--C--EEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEec
Q 001386 407 DGSLLGVAYSK--H--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1088)
Q Consensus 407 dg~~las~~~d--g--~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~ 482 (1088)
|+++|++.+.. + .+.+|| +|..+. ++.||...|++++|-|.... .+++|++|++|.+|+-.--+...++.
T Consensus 114 ds~RI~avGEGrerfg~~F~~D--SG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r 187 (603)
T KOG0318|consen 114 DSKRIAAVGEGRERFGHVFLWD--SGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFR 187 (603)
T ss_pred CCcEEEEEecCccceeEEEEec--CCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeeccc
Confidence 99999887643 2 355555 454445 78899999999999998765 89999999999999866566667888
Q ss_pred cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEec---CCCCceEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001386 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1088)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 559 (1088)
.|..-|+++.| +|||.++++++.||.+.+||=.+++....+. .|.+.|.+++|+||++.+++++. +.+++|
T Consensus 188 ~HskFV~~VRy--sPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa----Dkt~KI 261 (603)
T KOG0318|consen 188 EHSKFVNCVRY--SPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA----DKTIKI 261 (603)
T ss_pred ccccceeeEEE--CCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC----CceEEE
Confidence 89999999999 5578999999999999999999999988887 78889999999999999999987 445999
Q ss_pred EeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEE
Q 001386 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV 639 (1088)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 639 (1088)
||+.+.++++++.....-.+....+.|. +..|++.+.+|+|.+++...+..+..+.+|.. .|++++.+||+++|.+
T Consensus 262 WdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK--~ITaLtv~~d~~~i~S 337 (603)
T KOG0318|consen 262 WDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNK--SITALTVSPDGKTIYS 337 (603)
T ss_pred EEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheeccccc--ceeEEEEcCCCCEEEe
Confidence 9999999999987654222334445565 57899999999999999999999999987754 7999999999999999
Q ss_pred EeCCCcEEEEeCCCCCccccc-ccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceecccccc
Q 001386 640 IANENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 718 (1088)
Q Consensus 640 ~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 718 (1088)
|+.||.|.-|+..++..-... ..|...|.+++.+ +...+++.+.|.++++.++...
T Consensus 338 gsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~-----------------------~~~~~~t~g~Dd~l~~~~~~~~ 394 (603)
T KOG0318|consen 338 GSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS-----------------------ESGELFTIGWDDTLRVISLKDN 394 (603)
T ss_pred eccCceEEEEecCCccccccccccccceEEEEeec-----------------------CCCcEEEEecCCeEEEEecccC
Confidence 999999999999988765544 6788888888776 2345778888888888876433
Q ss_pred CCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCC
Q 001386 719 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQ 798 (1088)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1088)
.......+.+. ....+++..+++..++.....+.+.+-+... +... ...
T Consensus 395 ~~t~~~~~~lg-----~QP~~lav~~d~~~avv~~~~~iv~l~~~~~---------------------~~~~-----~~~ 443 (603)
T KOG0318|consen 395 GYTKSEVVKLG-----SQPKGLAVLSDGGTAVVACISDIVLLQDQTK---------------------VSSI-----PIG 443 (603)
T ss_pred cccccceeecC-----CCceeEEEcCCCCEEEEEecCcEEEEecCCc---------------------ceee-----ccc
Confidence 33322222222 2233888888887666655554443322110 1111 134
Q ss_pred CCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeE--EEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceee
Q 001386 799 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 875 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~ 875 (1088)
....+++++|++..+|+|. |+.|+||.+..+... ..+..|.++|++++||| |+.+||+|...+.|.+||+.+.+..
T Consensus 444 y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~~~ 522 (603)
T KOG0318|consen 444 YESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASREVK 522 (603)
T ss_pred cccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCcee
Confidence 5678999999999999998 899999999876543 34567999999999999 8999999999999999999998764
Q ss_pred e-eeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCe
Q 001386 876 S-KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH 954 (1088)
Q Consensus 876 ~-~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~ 954 (1088)
. .+.-|+++|.+++|||+..++||||-|-.|.||+++.... .+.....|.. .|+.+.|-.+...+-++.|-.
T Consensus 523 ~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~----~i~iknAH~~---gVn~v~wlde~tvvSsG~Da~ 595 (603)
T KOG0318|consen 523 TNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK----HIIIKNAHLG---GVNSVAWLDESTVVSSGQDAN 595 (603)
T ss_pred cceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh----heEecccccc---CceeEEEecCceEEeccCcce
Confidence 3 3445999999999999999999999999999999998542 2444555655 599999998888888899999
Q ss_pred EEEEEcC
Q 001386 955 LAIYEAE 961 (1088)
Q Consensus 955 i~vwd~~ 961 (1088)
|++|++.
T Consensus 596 iK~W~v~ 602 (603)
T KOG0318|consen 596 IKVWNVT 602 (603)
T ss_pred eEEeccc
Confidence 9999864
No 8
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-48 Score=412.98 Aligned_cols=581 Identities=15% Similarity=0.180 Sum_probs=445.7
Q ss_pred Cceeeeec-CCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE
Q 001386 336 SPMSMDFH-PVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1088)
Q Consensus 336 ~V~~v~~s-pdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~ 414 (1088)
.+..+..+ ..|++ +|+ +.-..|.+||+.+|+...... ...-...|+|++-+||.-.||+|
T Consensus 23 N~~~~~~~~~~Gr~-va~-~a~E~vn~WdlRtge~~~~l~-----------------~~~~k~evt~l~~~~d~l~lAVG 83 (888)
T KOG0306|consen 23 NINFVVKRSGKGRA-VAV-SALEQVNIWDLRTGEIEKKLI-----------------LLKKKAEVTCLRSSDDILLLAVG 83 (888)
T ss_pred ceeEEEeecCCCcE-EEE-eccccEeEEeeecchhhhhhh-----------------hhcccceEEEeeccCCcceEEEE
Confidence 44444443 45774 333 334789999999996543211 22244689999999999999999
Q ss_pred eCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeee
Q 001386 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1088)
Q Consensus 415 ~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 494 (1088)
..||.|+||+..++.... ++.+|...|+.+.|...|. .++|||.|+.|.+||+-...-+.++.||...|+..-|.
T Consensus 84 YaDGsVqif~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~ 158 (888)
T KOG0306|consen 84 YADGSVQIFSLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFL 158 (888)
T ss_pred ecCceEEeeccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhcc
Confidence 999999999999875433 7889999999999999999 89999999999999999988899999999999988874
Q ss_pred eeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC---------
Q 001386 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--------- 565 (1088)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~--------- 565 (1088)
.+..++++.+.|+.|++||+++..+..+...|...++.+++.+ +.+++++.+ ..+.+|++...
T Consensus 159 --~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~d----se~~v~~L~~~~D~~~~~~~ 230 (888)
T KOG0306|consen 159 --NGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTD----SELKVWELAFEDDEKETNRY 230 (888)
T ss_pred --CCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecC----CceEEEEeeccccccccccc
Confidence 3457999999999999999999999999999999999999988 677777653 34999988211
Q ss_pred -c--eeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEE--------EeCC---------------
Q 001386 566 -A--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT--------IDAG--------------- 619 (1088)
Q Consensus 566 -~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~--------~~~~--------------- 619 (1088)
. ...++... .++....+...++++++++-+.|..+.++.+.+.+.+.. .+.+
T Consensus 231 ~s~~~~G~~~rq--sk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~ 308 (888)
T KOG0306|consen 231 ISTKLRGTFIRQ--SKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLS 308 (888)
T ss_pred ceeeccceeeec--cCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHH
Confidence 0 11111111 134445566677788899989999999998875321100 0000
Q ss_pred ---------CCCCCCceEEEecCCC---EEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCc
Q 001386 620 ---------GGLPENPRICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 687 (1088)
Q Consensus 620 ---------~~~~~v~~v~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~ 687 (1088)
.....+.++.+-|.++ .|+. -.++++.+|.++......
T Consensus 309 ~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~----------------------------- 358 (888)
T KOG0306|consen 309 DEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTS----------------------------- 358 (888)
T ss_pred HHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCC-----------------------------
Confidence 0011344566655432 2222 445566666555310000
Q ss_pred eeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCC
Q 001386 688 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 767 (1088)
Q Consensus 688 ~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~ 767 (1088)
+.....-.+...+|...|.++++|.+...++++ .++.+++|+.
T Consensus 359 --------------------------------p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~---- 401 (888)
T KOG0306|consen 359 --------------------------------PEADRTSNIEIGGHRSDVRSLCVSSDSILLASG-AGESIKIWNR---- 401 (888)
T ss_pred --------------------------------ccccccceeeeccchhheeEEEeecCceeeeec-CCCcEEEEEc----
Confidence 000011112224599999999999998755554 4557777764
Q ss_pred CCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEE
Q 001386 768 LTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLA 846 (1088)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~ 846 (1088)
.+.+|+.+.. ...+.+..|-|.++++++|. .|.+.+||+.+...+.++.+|.+.|.+++
T Consensus 402 --------------~t~kciRTi~------~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~ 461 (888)
T KOG0306|consen 402 --------------DTLKCIRTIT------CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSIS 461 (888)
T ss_pred --------------cCcceeEEec------cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeee
Confidence 4555566542 34788999999999999998 79999999999999999999999999999
Q ss_pred EcCCCCcEEEEEeCCCeEEEEEcCC-----ceeeeeec-------cccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 001386 847 FNPHDNNVIAIGMDDSTILIYNARS-----SEVISKLE-------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 914 (1088)
Q Consensus 847 ~sp~d~~~lasg~~dg~i~lwd~~~-----~~~~~~l~-------~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~ 914 (1088)
.+| |++.+++|+.|.+|++||+.- |.....+. .-...|.|+.+||||++||.+=-|.+|+||-+++
T Consensus 462 ~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt- 539 (888)
T KOG0306|consen 462 LSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT- 539 (888)
T ss_pred ecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecc-
Confidence 999 899999999999999999742 21111111 1346799999999999999999999999999998
Q ss_pred ceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEe
Q 001386 915 GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 993 (1088)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s 993 (1088)
....-.+.||.. +|.|+..|||++++++ +.|.+|++|-++-|.|-++++ +|...|.++.|-|+..++++++
T Consensus 540 ----lKFflsLYGHkL---PV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f-AHdDSvm~V~F~P~~~~FFt~g 611 (888)
T KOG0306|consen 540 ----LKFFLSLYGHKL---PVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF-AHDDSVMSVQFLPKTHLFFTCG 611 (888)
T ss_pred ----eeeeeeeccccc---ceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh-cccCceeEEEEcccceeEEEec
Confidence 556677788887 8999999999999999 689999999999999999966 8999999999999999999999
Q ss_pred CCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001386 994 VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1058 (1088)
Q Consensus 994 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~ 1058 (1088)
.|+.|+-||....+.+..+. ++..-..|++.+| +|.++++++.|.+|++|+-.+
T Consensus 612 KD~kvKqWDg~kFe~iq~L~----------~H~~ev~cLav~~-~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 612 KDGKVKQWDGEKFEEIQKLD----------GHHSEVWCLAVSP-NGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred CcceEEeechhhhhhheeec----------cchheeeeeEEcC-CCCeEEeccCCceeEeeeccC
Confidence 99999999999998887776 2224456788889 799999999999999999855
No 9
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.3e-48 Score=407.91 Aligned_cols=560 Identities=16% Similarity=0.197 Sum_probs=434.3
Q ss_pred ceecCccCCCcCCC--CCCCchhhhcccccCCcccCCCchhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEec
Q 001386 287 VTYPGVSLKNIPDY--SPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDV 364 (1088)
Q Consensus 287 ~~~p~~~~~~~~~f--sP~~s~~~~~~~~~~~~~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~ 364 (1088)
.++|+....++..+ ||.+.++-..=++....-+..+...+++.+.- +.+|.|+.|||||+ ++|+|.. +.+.||..
T Consensus 48 ~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~f-k~~v~~i~fSPng~-~fav~~g-n~lqiw~~ 124 (893)
T KOG0291|consen 48 YTLPLETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNF-KRGVGAIKFSPNGK-FFAVGCG-NLLQIWHA 124 (893)
T ss_pred eeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEee-cCccceEEECCCCc-EEEEEec-ceeEEEec
Confidence 55666665555444 47766665433322222223333344444443 44999999999999 5666543 78999987
Q ss_pred CCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCE
Q 001386 365 NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNV 444 (1088)
Q Consensus 365 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v 444 (1088)
.....-...+| .....+.+|-..|.++.||.|.++|++|+.|.++++|+++..+.+... .+.+|...|
T Consensus 125 P~~~~~~~~pF-----------vl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~-~l~gHkd~V 192 (893)
T KOG0291|consen 125 PGEIKNEFNPF-----------VLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTY-ALNGHKDYV 192 (893)
T ss_pred CcchhcccCcc-----------eEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceE-eccCCCcce
Confidence 65432111111 112247789999999999999999999999999999999987764433 688999999
Q ss_pred EEEEecCCCCcEEEEEEeCCCcEEEEeCCC-----------------------Cce-----------eEEeccCCccEEE
Q 001386 445 NDLAFSAPCKQISVITCGDDKTIKVWDAVT-----------------------GSR-----------TYSFEGHGAPVYS 490 (1088)
Q Consensus 445 ~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~-----------------------~~~-----------~~~~~~~~~~v~~ 490 (1088)
.++-|..+.. -+++.+.||.+.+|.... ++. .+-+......|++
T Consensus 193 vacfF~~~~~--~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvta 270 (893)
T KOG0291|consen 193 VACFFGANSL--DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTA 270 (893)
T ss_pred EEEEeccCcc--eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceee
Confidence 9999999988 799999999999997650 111 0112223467888
Q ss_pred EeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEE
Q 001386 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1088)
Q Consensus 491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1088)
.+|++. ...|++|-..|...+|++..-..+..+.....+|..++|+..|.+|+.++. .-+++.+|+.++...+-.
T Consensus 271 a~fH~~--t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~---klgQLlVweWqsEsYVlK 345 (893)
T KOG0291|consen 271 AAFHKG--TNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS---KLGQLLVWEWQSESYVLK 345 (893)
T ss_pred eeccCC--ceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC---ccceEEEEEeeccceeee
Confidence 888764 469999999999999999999999999888899999999999999999874 367899999999988888
Q ss_pred EeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEe
Q 001386 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1088)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 650 (1088)
.++|. ..+.+++++|||+++++|++||+|+|||..+|-+..++..|.. .|+.+.|+..|+.+++.+.||+|+.||
T Consensus 346 QQgH~---~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts--~Vt~v~f~~~g~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 346 QQGHS---DRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS--GVTAVQFTARGNVLLSSSLDGTVRAWD 420 (893)
T ss_pred ccccc---cceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCC--ceEEEEEEecCCEEEEeecCCeEEeee
Confidence 88888 8999999999999999999999999999999999999997744 699999999999999999999999999
Q ss_pred CCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCC
Q 001386 651 TPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPS 730 (1088)
Q Consensus 651 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~ 730 (1088)
+...+..+++..
T Consensus 421 lkRYrNfRTft~-------------------------------------------------------------------- 432 (893)
T KOG0291|consen 421 LKRYRNFRTFTS-------------------------------------------------------------------- 432 (893)
T ss_pred ecccceeeeecC--------------------------------------------------------------------
Confidence 986654443321
Q ss_pred ccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCC
Q 001386 731 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 810 (1088)
Q Consensus 731 ~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 810 (1088)
.......|++..|.|
T Consensus 433 -----------------------------------------------------------------P~p~QfscvavD~sG 447 (893)
T KOG0291|consen 433 -----------------------------------------------------------------PEPIQFSCVAVDPSG 447 (893)
T ss_pred -----------------------------------------------------------------CCceeeeEEEEcCCC
Confidence 012234567777788
Q ss_pred CEEEEEe-CC-cEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc-eeeeeeccccCCeeE
Q 001386 811 AYLFSAS-GG-VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTG 887 (1088)
Q Consensus 811 ~~l~~~~-dg-~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~-~~~~~l~~h~~~V~~ 887 (1088)
.++..|+ |. .|.+|++++|+.+..+.+|.++|.+++|+| .+..||+|+.|.+|++||+-+. ..+.++. +...+..
T Consensus 448 elV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~ 525 (893)
T KOG0291|consen 448 ELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLA 525 (893)
T ss_pred CEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEe-eccceeE
Confidence 8887777 33 499999999999999999999999999999 8999999999999999998654 3445555 7778999
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCceeee----eee--------ecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCe
Q 001386 888 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTC----RSL--------QTPDGVMTLAPSETHIQFHKDQTRFLL-VHETH 954 (1088)
Q Consensus 888 l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~----~~~--------~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~ 954 (1088)
++|+|||+.||++.-||.|.+||+..+..... .-+ .....+......++.+++|+||.+|++ |..+.
T Consensus 526 vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~ 605 (893)
T KOG0291|consen 526 VSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNS 605 (893)
T ss_pred EEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCccc
Confidence 99999999999999999999999887543210 000 000111122246899999999999999 56789
Q ss_pred EEEEEcCcceeeeeeecCC-------------------------------------------------------CcCEEE
Q 001386 955 LAIYEAEELTCLKQWFPIS-------------------------------------------------------SVPISQ 979 (1088)
Q Consensus 955 i~vwd~~~~~~~~~~~~~h-------------------------------------------------------~~~v~~ 979 (1088)
|++|++.++-.++.+...+ .-.|.+
T Consensus 606 iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~s 685 (893)
T KOG0291|consen 606 ICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTS 685 (893)
T ss_pred EEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEE
Confidence 9999999987776642110 124788
Q ss_pred EEEeeCCCEEEEEeCCCcEEEEEcCCCceE
Q 001386 980 ATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1009 (1088)
Q Consensus 980 l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~ 1009 (1088)
+.|||.|+..|.++..| +.||.+.+.-+.
T Consensus 686 v~fsPtgraFAaatTEG-l~IYsld~~~~F 714 (893)
T KOG0291|consen 686 VQFSPTGRAFAAATTEG-LLIYSLDTTILF 714 (893)
T ss_pred EEECCCcCeeeeecccc-eEEEecCCceEE
Confidence 99999999999998887 788988877554
No 10
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.4e-48 Score=412.12 Aligned_cols=506 Identities=14% Similarity=0.223 Sum_probs=397.4
Q ss_pred CCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEE
Q 001386 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1088)
Q Consensus 334 ~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las 413 (1088)
+.+|+|++-+||.- +||+|-.||.|+||+..++..+.+ +.||..+|+++.|+..|.+||+
T Consensus 65 k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t-------------------fngHK~AVt~l~fd~~G~rlaS 124 (888)
T KOG0306|consen 65 KAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT-------------------FNGHKAAVTTLKFDKIGTRLAS 124 (888)
T ss_pred cceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------------ecccccceEEEEEcccCceEee
Confidence 35899999999987 799999999999999998876654 8899999999999999999999
Q ss_pred EeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEee
Q 001386 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493 (1088)
Q Consensus 414 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 493 (1088)
||.|+.|.+||+-...-.. .+.||...|+..-|..+.+ ++++.+.|+.|++||+++..|..+.-.|.+.++++++
T Consensus 125 GskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~ 199 (888)
T KOG0306|consen 125 GSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVL 199 (888)
T ss_pred cCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEEEE
Confidence 9999999999998654333 6899999999999998777 8999999999999999999999999999999999999
Q ss_pred eeeCCceEEEEEecCCeEEEEECCCCCce-------------EEecCCCCceEEEEEccCCCEEEEEeeCC---------
Q 001386 494 HAKENIHFIFSISVDGKIKAWLYDSLGAR-------------VDYDAPGLGCTRMAYSANGRRLFSCGTSK--------- 551 (1088)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------~~~~~~~~~v~~~~~s~~g~~l~~~~~~~--------- 551 (1088)
.+ +.+++++.|+.+++|++...... .......+....++..++++++++-+.+.
T Consensus 200 ~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s 275 (888)
T KOG0306|consen 200 DE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRS 275 (888)
T ss_pred ec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecC
Confidence 54 58999999999999998211000 00011111222333344444444433211
Q ss_pred -----------------------------------------------------------------CCceeEEEEeCCC-C
Q 001386 552 -----------------------------------------------------------------EGESFLVEWNESE-G 565 (1088)
Q Consensus 552 -----------------------------------------------------------------~~~~~i~iwd~~~-~ 565 (1088)
-.++.+..+.+.. +
T Consensus 276 ~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~ 355 (888)
T KOG0306|consen 276 KEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSG 355 (888)
T ss_pred HHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCC
Confidence 0012233333332 1
Q ss_pred ce--------eEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEE
Q 001386 566 AI--------KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 637 (1088)
Q Consensus 566 ~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 637 (1088)
.. ...+.||. ..|.+++++.+...+++|+ .+.+.+|+..+.+++.++... .+.+..|-|.++++
T Consensus 356 ~~~p~~~~~~~i~~~GHR---~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~----y~l~~~Fvpgd~~I 427 (888)
T KOG0306|consen 356 KTSPEADRTSNIEIGGHR---SDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG----YILASKFVPGDRYI 427 (888)
T ss_pred CCCccccccceeeeccch---hheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc----cEEEEEecCCCceE
Confidence 11 12344555 8999999998876666554 578999999999999999754 57889999999999
Q ss_pred EEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccc
Q 001386 638 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1088)
Q Consensus 638 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 717 (1088)
++|...|.+.++|+.+...+.+.+.|.+.++.++.. ||+...++++.|.+|++|+..
T Consensus 428 v~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~----------------------pD~~g~vT~saDktVkfWdf~- 484 (888)
T KOG0306|consen 428 VLGTKNGELQVFDLASASLVETIRAHDGAIWSISLS----------------------PDNKGFVTGSADKTVKFWDFK- 484 (888)
T ss_pred EEeccCCceEEEEeehhhhhhhhhccccceeeeeec----------------------CCCCceEEecCCcEEEEEeEE-
Confidence 999999999999999988888777777666666655 455556666666666666643
Q ss_pred cCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCC
Q 001386 718 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNS 797 (1088)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1088)
.-...+.. +-++..+.. ..+. .-
T Consensus 485 -----------------------------------------------l~~~~~gt--~~k~lsl~~---~rtL-----el 507 (888)
T KOG0306|consen 485 -----------------------------------------------LVVSVPGT--QKKVLSLKH---TRTL-----EL 507 (888)
T ss_pred -----------------------------------------------EEeccCcc--cceeeeecc---ceEE-----ec
Confidence 11000000 000000000 0011 14
Q ss_pred CCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee
Q 001386 798 QEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 876 (1088)
Q Consensus 798 ~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~ 876 (1088)
...|.|+.+||||++||++- |.+++||-+++.+...++.+|.-+|.|+.+|| |++++++|+.|.+|++|-+.-|.|..
T Consensus 508 ~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHK 586 (888)
T KOG0306|consen 508 EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHK 586 (888)
T ss_pred cccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhh
Confidence 67899999999999999997 99999999999999999999999999999999 89999999999999999999999999
Q ss_pred eeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeE
Q 001386 877 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHL 955 (1088)
Q Consensus 877 ~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i 955 (1088)
.+-+|.+.|.++.|-|+...+.++|.|+.|+-||-.. ...++.+.+|.. .|++++.+|+|.++++ +.|..|
T Consensus 587 S~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k-----Fe~iq~L~~H~~---ev~cLav~~~G~~vvs~shD~sI 658 (888)
T KOG0306|consen 587 SFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK-----FEEIQKLDGHHS---EVWCLAVSPNGSFVVSSSHDKSI 658 (888)
T ss_pred hhhcccCceeEEEEcccceeEEEecCcceEEeechhh-----hhhheeeccchh---eeeeeEEcCCCCeEEeccCCcee
Confidence 9999999999999999999999999999999999887 567888899887 8999999999999999 688999
Q ss_pred EEEEcCccee
Q 001386 956 AIYEAEELTC 965 (1088)
Q Consensus 956 ~vwd~~~~~~ 965 (1088)
++|.-.....
T Consensus 659 RlwE~tde~~ 668 (888)
T KOG0306|consen 659 RLWERTDEIL 668 (888)
T ss_pred EeeeccCcce
Confidence 9999765433
No 11
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.3e-50 Score=390.19 Aligned_cols=367 Identities=20% Similarity=0.291 Sum_probs=296.5
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+.||.++|.|++|+|+|+.||+|+.|.++++||+.+..... +.++|...|.|++|+|||+ .|++|+.||+|++||
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD 185 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence 77899999999999999999999999999999999986544 8999999999999999999 899999999999999
Q ss_pred CCCCcee-EEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeC
Q 001386 472 AVTGSRT-YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1088)
Q Consensus 472 ~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 550 (1088)
.++|+++ ..+.+|...|++++|.|- -..|..++|++++.
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~---------------------------------------hl~p~~r~las~sk- 225 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPL---------------------------------------HLVPPCRRLASSSK- 225 (480)
T ss_pred CCCCCcccccccCcccceeEEeeccc---------------------------------------ccCCCccceecccC-
Confidence 9999876 688999999999999653 13356667777654
Q ss_pred CCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEE
Q 001386 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1088)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1088)
++.++|||+..++++..+.+|. .+|+|+.|..+ .++++|+.|++|++|+...|.+...+.+|.+ .|+.++.
T Consensus 226 ---Dg~vrIWd~~~~~~~~~lsgHT---~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lal 296 (480)
T KOG0271|consen 226 ---DGSVRIWDTKLGTCVRTLSGHT---ASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLAL 296 (480)
T ss_pred ---CCCEEEEEccCceEEEEeccCc---cceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccch--heeeeec
Confidence 4448888888888999999999 99999999876 5899999999999999999999999998877 5888888
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccc
Q 001386 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 710 (1088)
Q Consensus 631 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 710 (1088)
+-|- .|-+|..|.+ +........ ...-+....
T Consensus 297 sTdy-~LRtgaf~~t--------~~~~~~~se----~~~~Al~rY----------------------------------- 328 (480)
T KOG0271|consen 297 STDY-VLRTGAFDHT--------GRKPKSFSE----EQKKALERY----------------------------------- 328 (480)
T ss_pred cchh-hhhccccccc--------cccCCChHH----HHHHHHHHH-----------------------------------
Confidence 7542 2223332211 111110000 000000000
Q ss_pred eeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceee
Q 001386 711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVN 790 (1088)
Q Consensus 711 ~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1088)
+ .+.-..+.++++++.|.++.+|+-..... ++..
T Consensus 329 ---~-------------------------~~~~~~~erlVSgsDd~tlflW~p~~~kk-----------------pi~r- 362 (480)
T KOG0271|consen 329 ---E-------------------------AVLKDSGERLVSGSDDFTLFLWNPFKSKK-----------------PITR- 362 (480)
T ss_pred ---H-------------------------HhhccCcceeEEecCCceEEEeccccccc-----------------chhh-
Confidence 0 00011234577777777777776322211 1110
Q ss_pred ccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 001386 791 DTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 869 (1088)
Q Consensus 791 ~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~ 869 (1088)
. .+|..-|+.+.||||++++|+++ |..|++||..+|+.+.+|.+|-..|..++||. |.++|++|+.|.++++|++
T Consensus 363 -m--tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V 438 (480)
T KOG0271|consen 363 -M--TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDV 438 (480)
T ss_pred -h--hchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEe
Confidence 1 15999999999999999999999 99999999999999999999999999999999 8999999999999999999
Q ss_pred CCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEE
Q 001386 870 RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 910 (1088)
Q Consensus 870 ~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd 910 (1088)
++.++...|.||.+.|.++.|+|||+.+++|+.|+.+++|.
T Consensus 439 ~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 439 RTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999999999999999999999995
No 12
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5e-50 Score=392.06 Aligned_cols=333 Identities=20% Similarity=0.320 Sum_probs=304.0
Q ss_pred hhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1088)
..|...+.||.+.|.|++|||+|+ .||+|+.|.++++||+.+..++.+ .++|...|.|++
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcva 164 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVA 164 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEE
Confidence 467788999999999999999999 599999999999999999988876 889999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecC-----CCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001386 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-----PCKQISVITCGDDKTIKVWDAVTGSRT 478 (1088)
Q Consensus 404 ~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-----d~~~l~l~s~s~d~~i~vwd~~~~~~~ 478 (1088)
|||||+.||+|+.||+|++||.++|+++.. .+.+|...|++++|-| ..+ ++++++.||+|+|||+..+.++
T Consensus 165 wsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~ 240 (480)
T KOG0271|consen 165 WSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCV 240 (480)
T ss_pred ECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEE
Confidence 999999999999999999999999987654 6889999999999965 556 7999999999999999999999
Q ss_pred EEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEc-----------cCCC-----
Q 001386 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS-----------ANGR----- 542 (1088)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-----------~~g~----- 542 (1088)
..+.+|..+|+|+.|-. ..++++|+.|++|++|+...+.....+.+|.+.|+.++.+ |.++
T Consensus 241 ~~lsgHT~~VTCvrwGG---~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~ 317 (480)
T KOG0271|consen 241 RTLSGHTASVTCVRWGG---EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF 317 (480)
T ss_pred EEeccCccceEEEEEcC---CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence 99999999999999832 2499999999999999999988899999999999998877 2233
Q ss_pred --------------------EEEEEeeCCCCceeEEEEeCCC-CceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCc
Q 001386 543 --------------------RLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 601 (1088)
Q Consensus 543 --------------------~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~ 601 (1088)
.|++++. +.++.+|+... .+++..+.+|. ..|+.+.|+||++++++++.|..
T Consensus 318 se~~~~Al~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq---~lVn~V~fSPd~r~IASaSFDkS 390 (480)
T KOG0271|consen 318 SEEQKKALERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQ---ALVNHVSFSPDGRYIASASFDKS 390 (480)
T ss_pred HHHHHHHHHHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchh---hheeeEEECCCccEEEEeecccc
Confidence 4888875 56699999864 45788888988 89999999999999999999999
Q ss_pred EEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceec
Q 001386 602 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA 681 (1088)
Q Consensus 602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 681 (1088)
|++|+..+|+.+.++.+| ...|+.++|+.|.++|++++.|.++++|++.+.+....+.+|.+.|.++.++
T Consensus 391 VkLW~g~tGk~lasfRGH--v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDws-------- 460 (480)
T KOG0271|consen 391 VKLWDGRTGKFLASFRGH--VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWS-------- 460 (480)
T ss_pred eeeeeCCCcchhhhhhhc--cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEec--------
Confidence 999999999999999976 4579999999999999999999999999999999999999999999999998
Q ss_pred cccCCceeecCCCCCCCCcccccccCccceecc
Q 001386 682 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 714 (1088)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~ 714 (1088)
|||..+++|+.|..+++|.
T Consensus 461 --------------pDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 461 --------------PDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred --------------CCCceeecCCCceEEEeec
Confidence 7889999999999999995
No 13
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.1e-41 Score=356.06 Aligned_cols=608 Identities=15% Similarity=0.173 Sum_probs=400.0
Q ss_pred ceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe-
Q 001386 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY- 415 (1088)
Q Consensus 337 V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~- 415 (1088)
-..++.+|-.. ++|.- ....|.++|+....+-+ ++..|..+++|+|||++|+|+|+|-
T Consensus 40 ~~gLa~~p~Sg-l~aYp-AGCvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEc 98 (1080)
T KOG1408|consen 40 ANGLASVPCSG-LCAYP-AGCVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGEC 98 (1080)
T ss_pred CCccccccccc-ceeec-cCcEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEeccc
Confidence 34566667655 34432 23678899988765443 2566888999999999999999984
Q ss_pred -CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeC--CCcEEEEeCCCCceeEEeccCCccEEEEe
Q 001386 416 -SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKVWDAVTGSRTYSFEGHGAPVYSLC 492 (1088)
Q Consensus 416 -~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 492 (1088)
....++||++.....+. ++..|...|+|++|+|.++ ++++.+. |-.|.+||++.......-+ -...|..++
T Consensus 99 G~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asnk-iss~Vsav~ 172 (1080)
T KOG1408|consen 99 GRTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASNK-ISSVVSAVA 172 (1080)
T ss_pred CCCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhcccccccc-cceeEEEEE
Confidence 56679999999876555 7889999999999999999 7777665 4467789877544332222 346678888
Q ss_pred eeeeCCceEEEEEecCCeEEEEECCCCCceE-EecCCCCc--eEEEEEccCCCEEEEEeeCC-CC--------ceeEEEE
Q 001386 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLG--CTRMAYSANGRRLFSCGTSK-EG--------ESFLVEW 560 (1088)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~--v~~~~~s~~g~~l~~~~~~~-~~--------~~~i~iw 560 (1088)
| +.+|.|+++.+ ...|++|.++...... .+...+.. ...+ .+..++++++.-+ .. .+.+.-+
T Consensus 173 f--sEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~l---r~n~f~avaCg~gicAestfait~qGhLvEF 246 (1080)
T KOG1408|consen 173 F--SEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNL---RFNEFLAVACGVGICAESTFAITAQGHLVEF 246 (1080)
T ss_pred E--ccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhcccc---ccchhhhhhhcCcccccceEEEecccceeee
Confidence 8 66888888866 5789999987665211 11111100 0000 0111111111100 00 1112211
Q ss_pred eCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCC---------------------
Q 001386 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG--------------------- 619 (1088)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~--------------------- 619 (1088)
. ..+++....... ....+|++.+ .++|++|+.+|.|++|+..+-..+.+++..
T Consensus 247 S--sRRLLDKWVqcR--TTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~ 320 (1080)
T KOG1408|consen 247 S--SRRLLDKWVQCR--TTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESS 320 (1080)
T ss_pred c--hhhhhhhhhhhh--ccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccC
Confidence 1 111111111111 1345666665 579999999999999998765444333211
Q ss_pred -CCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccc---cccccCcceeeeecCCCcceeccccCCceeecCCCC
Q 001386 620 -GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA---AGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 695 (1088)
Q Consensus 620 -~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 695 (1088)
...+....+.|++....|.+...|..++|||+..-..+.. +-.|..-|+.+..-|..
T Consensus 321 ~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~n------------------- 381 (1080)
T KOG1408|consen 321 PAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCN------------------- 381 (1080)
T ss_pred cccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeecccccc-------------------
Confidence 1123345788999899999999999999999986543322 22233333333322210
Q ss_pred CCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCC---
Q 001386 696 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST--- 772 (1088)
Q Consensus 696 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~--- 772 (1088)
.|...- +.-|.+- ++++++|++|++|++.........
T Consensus 382 ------------------------------------v~~~~~---aclp~~c-F~TCSsD~TIRlW~l~~ctnn~vyrRN 421 (1080)
T KOG1408|consen 382 ------------------------------------VHSPTA---ACLPRGC-FTTCSSDGTIRLWDLAFCTNNQVYRRN 421 (1080)
T ss_pred ------------------------------------ccCccc---ccCCccc-eeEecCCCcEEEeecccccccceeecc
Confidence 011100 0111111 445555555555554431111000
Q ss_pred ------------CCCC-cccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCC
Q 001386 773 ------------EVPP-RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPP 838 (1088)
Q Consensus 773 ------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~ 838 (1088)
+.+. .+-|...+. .-.......+....++++++||+|++||+|+ .|.++||++...+....+..|
T Consensus 422 ils~~l~ki~y~d~~~q~~~d~~~~~-fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAH 500 (1080)
T KOG1408|consen 422 ILSANLSKIPYEDSTQQIMHDASAGI-FDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAH 500 (1080)
T ss_pred cchhhhhcCccccCchhhhhhccCCc-ccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecc
Confidence 0000 000111100 0000001113567899999999999999998 799999999999999999999
Q ss_pred CCCeEEEEEcCC--CCcEEEEEeCCCeEEEEEcCC-ceeeeeeccccCCeeEEEECCCC--CEEEEEeCCCcEEEEEcCC
Q 001386 839 SPTATSLAFNPH--DNNVIAIGMDDSTILIYNARS-SEVISKLEGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDG 913 (1088)
Q Consensus 839 ~~~i~~l~~sp~--d~~~lasg~~dg~i~lwd~~~-~~~~~~l~~h~~~V~~l~~s~dg--~~las~s~Dg~i~iwd~~~ 913 (1088)
..+|.|+.||.. ..++||+++.|.-|+|||+.. ..+++++.+|+..|+++.|.-.| ..++++|.|+.|.+ +...
T Consensus 501 esEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~q 579 (1080)
T KOG1408|consen 501 ESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQ 579 (1080)
T ss_pred cceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhc
Confidence 999999999852 357999999999999999864 56789999999999999998877 77999999997654 3332
Q ss_pred CceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeeeeecCC--CcCEEEEEEeeCCCEEE
Q 001386 914 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPIS--SVPISQATFSCDCRMVF 990 (1088)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h--~~~v~~l~fs~dg~~l~ 990 (1088)
.. .....+. ...+......+..++..|..+++++ +.|..|+|||+.+|+..+.+...| .+....+...|.|-||+
T Consensus 580 k~-~~g~~f~-r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~a 657 (1080)
T KOG1408|consen 580 KA-SSGRLFP-RHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLA 657 (1080)
T ss_pred cc-cCceecc-ccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEE
Confidence 10 0011111 1111111135889999999999999 789999999999999999876554 56777889999999999
Q ss_pred EEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001386 991 TSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1057 (1088)
Q Consensus 991 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~ 1057 (1088)
+.+.|.++.++|..+|+++++...+. -..+.+.|.+ |=+.|++++.||+|+||.++
T Consensus 658 tScsdktl~~~Df~sgEcvA~m~GHs----------E~VTG~kF~n-DCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 658 TSCSDKTLCFVDFVSGECVAQMTGHS----------EAVTGVKFLN-DCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred EeecCCceEEEEeccchhhhhhcCcc----------hheeeeeecc-cchhheeecCCceEEEEECc
Confidence 99999999999999999998887332 3445689999 77889999999999999994
No 14
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.1e-40 Score=350.61 Aligned_cols=539 Identities=14% Similarity=0.181 Sum_probs=377.9
Q ss_pred eecccCCCCceeeeecCCCCeEEEEEc--ccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEEC
Q 001386 328 QTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~lla~g~--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1088)
+.+..|...++|++|||+|+ ++|+|- ....++||++..-..+.. +.+|.-.|+|++|+
T Consensus 72 hlvnssRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFs 131 (1080)
T KOG1408|consen 72 HLVNSSRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFS 131 (1080)
T ss_pred heecccCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeec
Confidence 44567777999999999999 689986 456799999998776655 77899999999999
Q ss_pred CCCCEEEEEeCC--CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE----
Q 001386 406 PDGSLLGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY---- 479 (1088)
Q Consensus 406 ~dg~~las~~~d--g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~---- 479 (1088)
|.++|+++.+.. -.|.+||+....... -..-...|..++|+.||. ++++++ ...|++|.++.++...
T Consensus 132 p~~kyvvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiP 204 (1080)
T KOG1408|consen 132 PGNKYVVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIP 204 (1080)
T ss_pred CCCcEEEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCcc
Confidence 999999988754 468889887543222 123456799999999999 788887 6789999887665110
Q ss_pred ---------Ee------------------------ccC-----------------CccEEEEeeeeeCCceEEEEEecCC
Q 001386 480 ---------SF------------------------EGH-----------------GAPVYSLCPHAKENIHFIFSISVDG 509 (1088)
Q Consensus 480 ---------~~------------------------~~~-----------------~~~v~~~~~~~~~~~~~l~s~~~dg 509 (1088)
.+ .|| ...-+|+++ +.++|++|+.+|
T Consensus 205 l~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV----s~r~I~cgCa~g 280 (1080)
T KOG1408|consen 205 LPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV----SSRLIACGCAKG 280 (1080)
T ss_pred ccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee----ecceEEEeeccc
Confidence 00 000 011123333 346999999999
Q ss_pred eEEEEECCCCCceEEecC------------------------CCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001386 510 KIKAWLYDSLGARVDYDA------------------------PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1088)
Q Consensus 510 ~i~iwd~~~~~~~~~~~~------------------------~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1088)
.|++++..+.....++.. .-.....+.|++....|.+... +..+++||++.-
T Consensus 281 ~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYn----dhSlYvWDvrD~ 356 (1080)
T KOG1408|consen 281 MVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYN----DHSLYVWDVRDV 356 (1080)
T ss_pred eeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEc----CceEEEEecccc
Confidence 999998765433222110 0113457789999999988865 556999999876
Q ss_pred ceeEEEeccccccccEEEEEEeCC-----------CCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCC
Q 001386 566 AIKRTYQGLQLQHNSVSVVHFDTA-----------KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1088)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1088)
..+......-.|...|+.+.--|- ...+++++.|++|++|++..+..-..+... |. +.+
T Consensus 357 ~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRN-----il----s~~- 426 (1080)
T KOG1408|consen 357 NKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRN-----IL----SAN- 426 (1080)
T ss_pred ccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecc-----cc----hhh-
Confidence 554433332223355666544331 235889999999999999764322222110 11 111
Q ss_pred CEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceecc
Q 001386 635 TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 714 (1088)
Q Consensus 635 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~ 714 (1088)
++-....|++..+...... -++|
T Consensus 427 -l~ki~y~d~~~q~~~d~~~--------------------------------------------------------~~fd 449 (1080)
T KOG1408|consen 427 -LSKIPYEDSTQQIMHDASA--------------------------------------------------------GIFD 449 (1080)
T ss_pred -hhcCccccCchhhhhhccC--------------------------------------------------------Cccc
Confidence 1111111222111110000 0000
Q ss_pred ccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCC
Q 001386 715 PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTD 794 (1088)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1088)
-. ..........+.++++||+|++|++|...|.+++|++..-... ..-
T Consensus 450 ka----------~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~----------------------~~~ 497 (1080)
T KOG1408|consen 450 KA----------LVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYT----------------------CFM 497 (1080)
T ss_pred cc----------chhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhh----------------------hhe
Confidence 00 0000113457899999999999999999999999998654321 111
Q ss_pred CCCCCCeeEEEEec---CCCEEEEEe-CCcEEEEEcC-CceeEEEecCCCCCeEEEEEcCCCC-cEEEEEeCCCeEEEEE
Q 001386 795 SNSQEAVPCFALSK---NDAYLFSAS-GGVISLYIVM-TFKTILTIMPPSPTATSLAFNPHDN-NVIAIGMDDSTILIYN 868 (1088)
Q Consensus 795 ~~~~~~v~~~~~s~---dg~~l~~~~-dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~~sp~d~-~~lasg~~dg~i~lwd 868 (1088)
..|+..|.|+.+|. ..++||+++ |.-|+|||.. ...+++++.+|...|+++.|...++ ..+++++.|..|.+-.
T Consensus 498 eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~ 577 (1080)
T KOG1408|consen 498 EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRV 577 (1080)
T ss_pred ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheeh
Confidence 25999999999987 357899998 7889999987 4567789999999999999987332 6778888898776543
Q ss_pred cCCceeeeeeccc-----cCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCC
Q 001386 869 ARSSEVISKLEGH-----SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 943 (1088)
Q Consensus 869 ~~~~~~~~~l~~h-----~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d 943 (1088)
.+...-...+..| ...++.++..|..+++++++.|+.|+||++.+++. .+.+.+...+.+...-+...|.
T Consensus 578 ~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq-----~k~FKgs~~~eG~lIKv~lDPS 652 (1080)
T KOG1408|consen 578 NQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ-----VKSFKGSRDHEGDLIKVILDPS 652 (1080)
T ss_pred hccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccce-----eeeecccccCCCceEEEEECCC
Confidence 3321111222222 24688999999999999999999999999999763 3444555444457889999999
Q ss_pred CCEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC
Q 001386 944 QTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1006 (1088)
Q Consensus 944 g~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~ 1006 (1088)
|.|+|+ ++|+++.++|..+|+|+.+ ..||+..|+.+.|++|.+.|++.+.||.|.||.+...
T Consensus 653 giY~atScsdktl~~~Df~sgEcvA~-m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 653 GIYLATSCSDKTLCFVDFVSGECVAQ-MTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred ccEEEEeecCCceEEEEeccchhhhh-hcCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 999999 6899999999999999999 4599999999999999999999999999999998763
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-40 Score=336.15 Aligned_cols=345 Identities=19% Similarity=0.270 Sum_probs=289.3
Q ss_pred CchhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCC--CcceeeeceeeeeeccccccceeeeecCCCCCe
Q 001386 322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS--GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1088)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V 399 (1088)
+|......+. |+.+|.+++|+|-..-++|+|+.|-+.++|++.. ........++ -|...-- .-...+..|
T Consensus 167 I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lr-----h~~~~~~--~s~~~nkdV 238 (524)
T KOG0273|consen 167 IPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLR-----HCIREGG--KSVPSNKDV 238 (524)
T ss_pred ccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhh-----hhhhhhc--ccCCccCCc
Confidence 5666677777 9999999999997765899999999999999974 1111100000 0000000 011134689
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001386 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1088)
Q Consensus 400 ~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~ 479 (1088)
++++|+.+|..||+|+.||.+++|+...+. +. ++..|.++|.++.|+.+|. +|++++.|+++.+||..+|....
T Consensus 239 T~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 239 TSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred ceEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEE
Confidence 999999999999999999999999998653 33 6889999999999999999 89999999999999999999999
Q ss_pred EeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001386 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1088)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 559 (1088)
.+.-|..+-..+.|.. ...+++.+.||.|+++.+...++..++.+|.+.|.++.|.|.|.+|++++. ++++.|
T Consensus 313 ~f~~~s~~~lDVdW~~---~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~Tlki 385 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQS---NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLKI 385 (524)
T ss_pred eeeeccCCccceEEec---CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeEe
Confidence 9999988866666642 247999999999999999999999999999999999999999999999986 667999
Q ss_pred EeCCCCceeEEEeccccccccEEEEEEeCCC---------CEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEE
Q 001386 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAK---------DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1088)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1088)
|+.........+..|. ..|..+.|+|.| ..+++++.|++|++||+..+.++..+..|. .+|.+++|
T Consensus 386 Ws~~~~~~~~~l~~Hs---kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~--~pVysvaf 460 (524)
T KOG0273|consen 386 WSMGQSNSVHDLQAHS---KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQ--EPVYSVAF 460 (524)
T ss_pred eecCCCcchhhhhhhc---cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCC--CceEEEEe
Confidence 9999999999999988 899999999965 468999999999999999999999997664 47999999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccc
Q 001386 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 710 (1088)
Q Consensus 631 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 710 (1088)
+|+|+++|+|+.||.|.+|+..+++.++...
T Consensus 461 S~~g~ylAsGs~dg~V~iws~~~~~l~~s~~------------------------------------------------- 491 (524)
T KOG0273|consen 461 SPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ------------------------------------------------- 491 (524)
T ss_pred cCCCcEEEecCCCCeeEeccccchheeEeec-------------------------------------------------
Confidence 9999999999999999999999887665443
Q ss_pred eeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEc
Q 001386 711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 763 (1088)
Q Consensus 711 ~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~ 763 (1088)
..+.|..++|+.+|..+.++.+|+.+.+.|+
T Consensus 492 ----------------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 492 ----------------------GTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred ----------------------CCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 3345778899999999999999998888775
No 16
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.3e-42 Score=339.79 Aligned_cols=283 Identities=19% Similarity=0.247 Sum_probs=266.3
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC--CC
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD--GS 409 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d--g~ 409 (1088)
|.+.+|..+.||+|++ ++|||+-+|.++||+..++..+.+ |.||...|.++.|+|. +.
T Consensus 173 gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~~ 232 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSDL 232 (459)
T ss_pred cCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCcc
Confidence 6677999999999999 799999999999999999977765 8999999999999996 67
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEE
Q 001386 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~ 489 (1088)
.+|+|+.||++++|++++...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++||+.++..+...+||...|.
T Consensus 233 ~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~ 307 (459)
T KOG0272|consen 233 NLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGVF 307 (459)
T ss_pred ceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhcccccccc
Confidence 99999999999999999876665 7889999999999999999 899999999999999999999999999999999
Q ss_pred EEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeE
Q 001386 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1088)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1088)
+++|+ +||.++++|+.|..-+|||++++.++..+.+|..+|.+++|+|+|..||+|+. +++++|||++....+.
T Consensus 308 ~iaf~--~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~ly 381 (459)
T KOG0272|consen 308 SIAFQ--PDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSELY 381 (459)
T ss_pred eeEec--CCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeecccccce
Confidence 99995 47889999999999999999999999999999999999999999999999975 6679999999999999
Q ss_pred EEeccccccccEEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEE
Q 001386 570 TYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1088)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1088)
++.+|. +-|+.++|+| .|.+|++++.|++++||...+..+++.+.+|.+ .|.++.+++|+..+++++.|+++++
T Consensus 382 ~ipAH~---nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~KL 456 (459)
T KOG0272|consen 382 TIPAHS---NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIKL 456 (459)
T ss_pred eccccc---chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceeee
Confidence 999999 9999999998 688999999999999999999999999998865 6999999999999999999999999
Q ss_pred Ee
Q 001386 649 LE 650 (1088)
Q Consensus 649 wd 650 (1088)
|.
T Consensus 457 W~ 458 (459)
T KOG0272|consen 457 WR 458 (459)
T ss_pred cc
Confidence 95
No 17
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=2.4e-37 Score=333.22 Aligned_cols=580 Identities=16% Similarity=0.164 Sum_probs=425.5
Q ss_pred eeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCE
Q 001386 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 419 (1088)
Q Consensus 340 v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~ 419 (1088)
..|..-|..++++.+.+.+..+||.+.-..+.. -..+...|+|++-..+- +.+++. ..
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~~--vy~A~g-~~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKDY--VYVASG-NK 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCce--EEEecC-cE
Confidence 555555666888888999999999988776653 23477889999876544 444332 33
Q ss_pred EEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-cee----EEeccCCccEEEEeee
Q 001386 420 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRT----YSFEGHGAPVYSLCPH 494 (1088)
Q Consensus 420 i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~-~~~----~~~~~~~~~v~~~~~~ 494 (1088)
|.+|.- |+.++. .+.+|.+.|..+.- -|. .++++..++.+.||+...+ ..+ ..++.....|+++. |
T Consensus 97 i~~~~r--gk~i~~--~~~~~~a~v~~l~~--fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYAR--GKHIRH--TTLLHGAKVHLLLP--FGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEEc--cceEEE--EeccccceEEEEee--ecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 666643 433332 46678777776653 356 6888999999999998874 221 11222233377664 5
Q ss_pred eeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEecc
Q 001386 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1088)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1088)
|+.--+.++.|+.+|.+.+|++++++.+.++......|+++.-+|-=..++.|.. +|.|.+++++.++.+.+++..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEcc
Confidence 5555567999999999999999999999999999999999999999999999876 566999999999999999977
Q ss_pred ccccccEEEEEEeCCCCEEEE-EeCCCcEEEEEcCCCeeeEEEe-CCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCC
Q 001386 575 QLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTID-AGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 575 ~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
. +.|+.++|..||+.+++ |+..|.+.+||++..+.+..+. .| ...+....|.|....+++++.|+.+++|=.+
T Consensus 244 ~---g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah--~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD 318 (910)
T KOG1539|consen 244 W---GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH--YGSVTGATFLPGEPVLVTAGADNSLKVWVFD 318 (910)
T ss_pred c---cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc--cCCcccceecCCCceEeeccCCCceeEEEee
Confidence 6 89999999999987665 5567999999999988877766 34 3358889999999999999999999988655
Q ss_pred CC----CcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeec
Q 001386 653 ES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 728 (1088)
Q Consensus 653 ~~----~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~ 728 (1088)
++ +.++...+
T Consensus 319 ~~dg~pR~LR~R~G------------------------------------------------------------------ 332 (910)
T KOG1539|consen 319 SGDGVPRLLRSRGG------------------------------------------------------------------ 332 (910)
T ss_pred CCCCcchheeeccC------------------------------------------------------------------
Confidence 33 22333333
Q ss_pred CCccccccEEEEEEe-cCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEe
Q 001386 729 PSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 807 (1088)
Q Consensus 729 ~~~~~~~~i~~~~~s-~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 807 (1088)
|..+..++.|. .+|..+++++.|++.+.+++........... ......++..-.. .+..-.-.+|..+++.
T Consensus 333 ----Hs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~---~~~~~~~kk~~~~-~~~~~k~p~i~~fa~~ 404 (910)
T KOG1539|consen 333 ----HSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ---LHNKKRAKKVNVF-STEKLKLPPIVEFAFE 404 (910)
T ss_pred ----CCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc---ccccccccccccc-chhhhcCCcceeeecc
Confidence 55555555554 4556666666666665555433222111000 1111111100000 0000023355566654
Q ss_pred cCC----CEEEEEe--CCcEEEEEcCCcee-EEEec-----CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceee
Q 001386 808 KND----AYLFSAS--GGVISLYIVMTFKT-ILTIM-----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 875 (1088)
Q Consensus 808 ~dg----~~l~~~~--dg~i~iwd~~~~~~-~~~~~-----~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~ 875 (1088)
-.. .-++++. +..++.|+...... ...+. .....+++++.++ .|++.+.|+..|.|-+|++++|-..
T Consensus 405 ~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r 483 (910)
T KOG1539|consen 405 NAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHR 483 (910)
T ss_pred cchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCeee
Confidence 321 2244443 56799999986554 23333 2336889999999 9999999999999999999999988
Q ss_pred eee---ccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-Ee
Q 001386 876 SKL---EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VH 951 (1088)
Q Consensus 876 ~~l---~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~ 951 (1088)
..+ ++|.++|++++...-++.+++++.+|.+++||.+... .+...+-. ..+.++..+.....+++ ..
T Consensus 484 ~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-----l~~~l~l~----~~~~~iv~hr~s~l~a~~~d 554 (910)
T KOG1539|consen 484 KSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV-----LKKSLRLG----SSITGIVYHRVSDLLAIALD 554 (910)
T ss_pred cccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc-----eeeeeccC----CCcceeeeeehhhhhhhhcC
Confidence 888 5899999999998888999999999999999999844 22222211 24788888888888888 46
Q ss_pred CCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceE
Q 001386 952 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1031 (1088)
Q Consensus 952 d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1088)
|-.|+++|+.+.+.++. +.||+..|++++|||||++|++++.|++|++||+.++.++-.+... .....
T Consensus 555 df~I~vvD~~t~kvvR~-f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd-----------~~~~s 622 (910)
T KOG1539|consen 555 DFSIRVVDVVTRKVVRE-FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD-----------SPCTS 622 (910)
T ss_pred ceeEEEEEchhhhhhHH-hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC-----------Cccee
Confidence 67899999999999888 5599999999999999999999999999999999999999776522 12467
Q ss_pred EEECCCCCCEEEEEeCC-CcEEEEeC
Q 001386 1032 IAAHPLKPTQFAVGLTN-GEVYVIEP 1056 (1088)
Q Consensus 1032 ~~~~p~d~~~l~~~~~d-g~v~~w~l 1056 (1088)
++|+| +|++|+|+..| .-|++|.=
T Consensus 623 ls~SP-ngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 623 LSFSP-NGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred eEECC-CCCEEEEEEecCceEEEEEc
Confidence 99999 89999999999 68999964
No 18
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=7.5e-38 Score=330.24 Aligned_cols=643 Identities=15% Similarity=0.174 Sum_probs=434.3
Q ss_pred eeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCC---EEEEEeC
Q 001386 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS---LLGVAYS 416 (1088)
Q Consensus 340 v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~---~las~~~ 416 (1088)
..|.|.+ ++|.|.. ..|.+||........+ +.||.++|+|+.|-|+.+ ++++|+.
T Consensus 20 ~sw~~~~--~vafGa~-~~Iav~dp~k~~i~t~-------------------l~GH~a~VnC~~~l~~s~~~a~~vsG~s 77 (764)
T KOG1063|consen 20 SSWGPGG--LVAFGAG-PAIAVADPEKILIVTT-------------------LDGHVARVNCVHWLPTSEIVAEMVSGDS 77 (764)
T ss_pred ccccccc--eEEecCC-ceEEEeCcccceeEEe-------------------ccCCccceEEEEEcccccccceEEEccC
Confidence 3446665 4666654 7899999877644333 899999999999999888 8999999
Q ss_pred CCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc--eeEEeccCCccE--EEEe
Q 001386 417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPV--YSLC 492 (1088)
Q Consensus 417 dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~--~~~~~~~~~~~v--~~~~ 492 (1088)
|+.|++|.++. +.+.....+.+|...+.|+. .... ...+...|+.+.+||.+..+ ++..+.-..+.+ .+++
T Consensus 78 D~~v~lW~l~~-~~~~~i~~~~g~~~~~~cv~--a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~ 152 (764)
T KOG1063|consen 78 DGRVILWKLRD-EYLIKIYTIQGHCKECVCVV--ARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLA 152 (764)
T ss_pred CCcEEEEEEee-hheEEEEeecCcceeEEEEE--eeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHh
Confidence 99999999993 33455557778766665554 3222 22333689999999985555 333333222333 3344
Q ss_pred eeeeCCceEEEEEecCCeEEEEECCCC--CceEEecCCCCceEEEEEccCCC---EEEEEeeCCCCceeEEEEeCCCCc-
Q 001386 493 PHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSANGR---RLFSCGTSKEGESFLVEWNESEGA- 566 (1088)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~g~---~l~~~~~~~~~~~~i~iwd~~~~~- 566 (1088)
+.++++.-.++.|+.+..|.++.-.+. .....+.+|...|.+++|...+. +|++++ .+.+|++|.+.-+.
T Consensus 153 ~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~S----QD~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 153 ALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSS----QDRYIRIWRIVLGDD 228 (764)
T ss_pred hhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecC----CceEEEEEEEEecCC
Confidence 445444456777788888888865533 34567889999999999987655 444443 37789999765332
Q ss_pred --------------------eeEE----------EeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC--eeeE
Q 001386 567 --------------------IKRT----------YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLT 614 (1088)
Q Consensus 567 --------------------~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~ 614 (1088)
.... +.||. +.|+++.|+|.+..|++++.|.++.+|...+. -.+.
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe---DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~ 305 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE---DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVD 305 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc---cceEEEEEccchhhheecccCcceEEEecCCccceEEE
Confidence 1111 12555 99999999999999999999999999987654 3333
Q ss_pred EEeCC---CCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCC---CcccccccccCcceeeeecCCCcceeccccCCce
Q 001386 615 TIDAG---GGLPENPRICFNKNGTLLAVIANENRIKILETPES---NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 688 (1088)
Q Consensus 615 ~~~~~---~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~ 688 (1088)
..... +.........|+|+++.+++-+..|..++|..... .....+.+|.+.|+.+++.
T Consensus 306 ~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~--------------- 370 (764)
T KOG1063|consen 306 VVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWD--------------- 370 (764)
T ss_pred EEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeec---------------
Confidence 33322 12234678999999999999999999999994332 3344678899999999998
Q ss_pred eecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCC
Q 001386 689 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL 768 (1088)
Q Consensus 689 ~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~ 768 (1088)
|.|.++++.+.|.+-|++-.-.. ......+.-| ..|...++|+++-+....+++++.+..+++|+.+..-.
T Consensus 371 -------psGeflLsvs~DQTTRlFa~wg~-q~~wHEiaRP-QiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv 441 (764)
T KOG1063|consen 371 -------PSGEFLLSVSLDQTTRLFARWGR-QQEWHEIARP-QIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFV 441 (764)
T ss_pred -------CCCCEEEEeccccceeeeccccc-ccceeeeccc-ccccccceeeehccCCceeeecccceeeeeecCcHHHH
Confidence 56788999999999999875421 1222222222 35889999999998766788999999999998653211
Q ss_pred CCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEE-EEEeCCc--E-----------EEEEcC-------
Q 001386 769 TLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYL-FSASGGV--I-----------SLYIVM------- 827 (1088)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l-~~~~dg~--i-----------~iwd~~------- 827 (1088)
. ......|.+...... ......|..+-.|.+.-+. .+-+.+. + .+....
T Consensus 442 ~--------~l~~i~g~~~~~~~~--~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~ 511 (764)
T KOG1063|consen 442 K--------SLMAICGKCFKGSDE--LPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQ 511 (764)
T ss_pred H--------HHHHHhCccccCchh--cccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHH
Confidence 0 000001111111000 0122233333333322221 1111111 0 001000
Q ss_pred --CceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC-----eEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEE
Q 001386 828 --TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS 900 (1088)
Q Consensus 828 --~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~ 900 (1088)
....++.+.+|...|.+++.+| +++++|+++... .|++|+..+...+..+.+|+-.|+.++|||||++|+++
T Consensus 512 ~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsv 590 (764)
T KOG1063|consen 512 NTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSV 590 (764)
T ss_pred hccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEe
Confidence 1123456779999999999999 899999987654 79999999999999999999999999999999999999
Q ss_pred eCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcc--eeeee-eecCCCcC
Q 001386 901 GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEEL--TCLKQ-WFPISSVP 976 (1088)
Q Consensus 901 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~--~~~~~-~~~~h~~~ 976 (1088)
|.|+++.+|........... +...+.|.. -|.++.|+||+.++|+ +.|++|.+|..... +.+.. -...++..
T Consensus 591 sRDRt~sl~~~~~~~~~e~~-fa~~k~HtR---IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~a 666 (764)
T KOG1063|consen 591 SRDRTVSLYEVQEDIKDEFR-FACLKAHTR---IIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLA 666 (764)
T ss_pred ecCceEEeeeeecccchhhh-hccccccce---EEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCc
Confidence 99999999998664322222 333445544 6899999999999999 68999999999887 55554 33456899
Q ss_pred EEEEEEee-C----CCEEEEEeCCCcEEEEEcCCCceEEEec----cccccCCCCccccccceEEEECCC---------C
Q 001386 977 ISQATFSC-D----CRMVFTSFVDGTLSIHEASNLEVQCRIL----STAYLRPTTSCLHVYPHAIAAHPL---------K 1038 (1088)
Q Consensus 977 v~~l~fs~-d----g~~l~s~s~dg~v~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~---------d 1038 (1088)
|+++++.| + +..+++|-..|.|.+|....-....... ...--+..++. .....+.|.|. .
T Consensus 667 VTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~aV~rl~w~p~~~~~~~~~~~ 744 (764)
T KOG1063|consen 667 VTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPD--SAVNRLLWRPTCSDDWVEDKE 744 (764)
T ss_pred eeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChH--HhhheeEeccccccccccccc
Confidence 99999987 2 2367888899999999966221111100 00000111111 22345677762 1
Q ss_pred CCEEEEEeCCCcEEEEeCC
Q 001386 1039 PTQFAVGLTNGEVYVIEPN 1057 (1088)
Q Consensus 1039 ~~~l~~~~~dg~v~~w~l~ 1057 (1088)
...|++|++|.+++++++.
T Consensus 745 ~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 745 WLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred eeEEeeecccceeEEeecc
Confidence 2357999999999999874
No 19
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-39 Score=305.61 Aligned_cols=298 Identities=19% Similarity=0.282 Sum_probs=255.9
Q ss_pred heeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEEC
Q 001386 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1088)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1088)
+.-+|++|+++|+.++..+.+..++.+++.|.++.+|++.......-. ....+.||+..|..++.+
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~--------------~~r~~~GHsH~v~dv~~s 72 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGV--------------PVRRLTGHSHFVSDVVLS 72 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCc--------------eeeeeeccceEecceEEc
Confidence 456789999999999999998889999999999999999765332211 112388999999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccC-
Q 001386 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH- 484 (1088)
Q Consensus 406 ~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~- 484 (1088)
+||.+.++++.|+++++||+.+|+..+ .|.+|...|.+++|++|++ .+++|+.|++|++||+. |.+..++..+
T Consensus 73 ~dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~-g~ck~t~~~~~ 146 (315)
T KOG0279|consen 73 SDGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTL-GVCKYTIHEDS 146 (315)
T ss_pred cCCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeec-ccEEEEEecCC
Confidence 999999999999999999999996555 6889999999999999999 69999999999999955 4555555443
Q ss_pred -CccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC
Q 001386 485 -GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1088)
Q Consensus 485 -~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 563 (1088)
.+.|.+++|+|+++..+|++++.|++|++||+++.+....+.+|.+.++.+++||||...++|+. ++.+.+||++
T Consensus 147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL~ 222 (315)
T KOG0279|consen 147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDLN 222 (315)
T ss_pred CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEcc
Confidence 78999999999987899999999999999999999999999999999999999999999999875 5569999999
Q ss_pred CCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCC-------CCCCceEEEecCCCE
Q 001386 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-------LPENPRICFNKNGTL 636 (1088)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~s~~~~~ 636 (1088)
.++.+..+... ..|.+++|+|+.-.| ++..+..|+|||++++..+..+..... .+...+++|++||..
T Consensus 223 ~~k~lysl~a~----~~v~sl~fspnrywL-~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~t 297 (315)
T KOG0279|consen 223 EGKNLYSLEAF----DIVNSLCFSPNRYWL-CAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQT 297 (315)
T ss_pred CCceeEeccCC----CeEeeEEecCCceeE-eeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcE
Confidence 99998877654 489999999985444 444556699999999998887765421 234567899999999
Q ss_pred EEEEeCCCcEEEEeCC
Q 001386 637 LAVIANENRIKILETP 652 (1088)
Q Consensus 637 l~~~~~dg~i~iwd~~ 652 (1088)
|.+|..|+.|++|.+.
T Consensus 298 Lf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 298 LFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEeeecCCcEEEEEee
Confidence 9999999999999875
No 20
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-38 Score=326.93 Aligned_cols=480 Identities=16% Similarity=0.263 Sum_probs=359.2
Q ss_pred eecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
+++..|++.|.++.|+|... .+.++-..|.|.|||.++...++.+. -..-+|++..|-+-
T Consensus 7 rk~~~rSdRVKsVd~HPteP-w~la~LynG~V~IWnyetqtmVksfe-------------------V~~~PvRa~kfiaR 66 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEP-WILAALYNGDVQIWNYETQTMVKSFE-------------------VSEVPVRAAKFIAR 66 (794)
T ss_pred hHhhccCCceeeeecCCCCc-eEEEeeecCeeEEEecccceeeeeee-------------------ecccchhhheeeec
Confidence 55667999999999999998 56677788999999999998887633 26688999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-ceeEEeccCCc
Q 001386 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGA 486 (1088)
Q Consensus 408 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~-~~~~~~~~~~~ 486 (1088)
.+++++|++|..|+||+.++++.++ .+..|..-|.+++.+|... +++|+|.|-+|++||++.+ .+.++|+||..
T Consensus 67 knWiv~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~H 141 (794)
T KOG0276|consen 67 KNWIVTGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEH 141 (794)
T ss_pred cceEEEecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcce
Confidence 9999999999999999999998766 7889999999999999998 8999999999999999875 67899999999
Q ss_pred cEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCC--CEEEEEeeCCCCceeEEEEeCCC
Q 001386 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--RRLFSCGTSKEGESFLVEWNESE 564 (1088)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~~~~~~~~~~i~iwd~~~ 564 (1088)
.|.+++|.|. |...+++++.|++|++|.+....+..++.+|...|.|+.+-+-| .+|++++. +..+.+||.++
T Consensus 142 yVMqv~fnPk-D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQt 216 (794)
T KOG0276|consen 142 YVMQVAFNPK-DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQT 216 (794)
T ss_pred EEEEEEecCC-CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecch
Confidence 9999999987 45799999999999999999999999999999999999998755 68888875 67799999999
Q ss_pred CceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCC
Q 001386 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1088)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1088)
..+++++.||. ..|+.++|+|.-..+++|++||+++||+..+.+...++.... ..+.|++-.+.++.+++|.+.|
T Consensus 217 k~CV~TLeGHt---~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gl--eRvW~I~~~k~~~~i~vG~Deg 291 (794)
T KOG0276|consen 217 KSCVQTLEGHT---NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGL--ERVWCIAAHKGDGKIAVGFDEG 291 (794)
T ss_pred HHHHHHhhccc---ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCC--ceEEEEeecCCCCeEEEeccCC
Confidence 99999999999 999999999999999999999999999999998888887553 4689999999888999999888
Q ss_pred cEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcce
Q 001386 645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 724 (1088)
Q Consensus 645 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~ 724 (1088)
.+.+ .+....+...+ . +.|+ .+|...
T Consensus 292 ~i~v-~lgreeP~vsM------------d----------------------~~gK-----------Iiwa~~-------- 317 (794)
T KOG0276|consen 292 SVTV-KLGREEPAVSM------------D----------------------SNGK-----------IIWAVH-------- 317 (794)
T ss_pred cEEE-EccCCCCceee------------c----------------------CCcc-----------EEEEcC--------
Confidence 7765 22222111111 1 0111 112110
Q ss_pred eeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCC-CCCCCeeE
Q 001386 725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDS-NSQEAVPC 803 (1088)
Q Consensus 725 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~ 803 (1088)
+.|..+-. -+.+..+ ++..|+.+-. ..++. ...-....
T Consensus 318 ----------~ei~~~~~-------ks~~~~~-----------------------ev~DgErL~L-svKeLgs~eiyPq~ 356 (794)
T KOG0276|consen 318 ----------SEIQAVNL-------KSVGAQK-----------------------EVTDGERLPL-SVKELGSVEIYPQT 356 (794)
T ss_pred ----------ceeeeeec-------eeccCcc-----------------------cccCCccccc-hhhhccccccchHH
Confidence 01111100 0000000 1111111100 00000 01112345
Q ss_pred EEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccC
Q 001386 804 FALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK 883 (1088)
Q Consensus 804 ~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~ 883 (1088)
++-+|+|+++++++||.-.||..-..+ ....+......|++ |....|+-..++.|+++ ++.+....+...-.
T Consensus 357 L~hsPNGrfV~VcgdGEyiIyTala~R-----nK~fG~~~eFvw~~-dsne~avRes~~~vki~--knfke~ksi~~~~~ 428 (794)
T KOG0276|consen 357 LAHSPNGRFVVVCGDGEYIIYTALALR-----NKAFGSGLEFVWAA-DSNEFAVRESNGNVKIF--KNFKEHKSIRPDMS 428 (794)
T ss_pred hccCCCCcEEEEecCccEEEEEeeehh-----hcccccceeEEEcC-CCCeEEEEecCCceEEE--ecceeccccccccc
Confidence 788999999999999999998743222 12445667889999 76777777778889998 66666555542111
Q ss_pred CeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcC
Q 001386 884 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 961 (1088)
Q Consensus 884 ~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~ 961 (1088)
+..--.|.+|...+. +.+++||.++++. ++..+-. .-++.|+.+|.+++++.|...+++...
T Consensus 429 ----~e~i~gg~Llg~~ss-~~~~fydW~~~~l-----VrrI~v~------~k~v~w~d~g~lVai~~d~Sfyil~~n 490 (794)
T KOG0276|consen 429 ----AEGIFGGPLLGVRSS-DFLCFYDWESGEL-----VRRIEVT------SKHVYWSDNGELVAIAGDDSFYILKFN 490 (794)
T ss_pred ----eeeecCCceEEEEeC-CeEEEEEcccceE-----EEEEeec------cceeEEecCCCEEEEEecCceeEEEec
Confidence 111123555665554 5599999998653 3333221 347999999999999888876666544
No 21
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.7e-40 Score=330.42 Aligned_cols=285 Identities=17% Similarity=0.258 Sum_probs=266.1
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCC
Q 001386 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473 (1088)
Q Consensus 394 ~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~ 473 (1088)
|.+.+|..+.||+|++.||+|+.+|.++||+..+...+. +|.+|...|.++.|+|....+.++||+.||++++|++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 466899999999999999999999999999999875444 79999999999999998432379999999999999999
Q ss_pred CCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCC
Q 001386 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1088)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 553 (1088)
+..++..+.+|...|..++|+| +|++|+|++.|.+-++||+++........+|...|.+++|.+||..+++|+.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecC--CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 9999999999999999999976 6789999999999999999999999999999999999999999999999986
Q ss_pred ceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec-
Q 001386 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK- 632 (1088)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~- 632 (1088)
+..-+|||+++|.++..+.+|. .+|.++.|+|+|-.+++|+.|++++|||++..+.+.++..|.. .|..|.|+|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~---k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~ 398 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHI---KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQ 398 (459)
T ss_pred cchhheeecccCcEEEEecccc---cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEeccc
Confidence 5568899999999999999998 9999999999999999999999999999999999999987755 699999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCcccee
Q 001386 633 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1088)
Q Consensus 633 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v 712 (1088)
.|.+|++++.|++++||...+..+++.+.+|.+.|.++.++ +++..+++++.|.++++
T Consensus 399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis----------------------~d~~~i~t~s~DRT~KL 456 (459)
T KOG0272|consen 399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDIS----------------------PDSQAIATSSFDRTIKL 456 (459)
T ss_pred CCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEec----------------------cCCceEEEeccCceeee
Confidence 78999999999999999999999999999999999999887 67899999999999999
Q ss_pred cc
Q 001386 713 EK 714 (1088)
Q Consensus 713 w~ 714 (1088)
|.
T Consensus 457 W~ 458 (459)
T KOG0272|consen 457 WR 458 (459)
T ss_pred cc
Confidence 96
No 22
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.2e-38 Score=302.10 Aligned_cols=294 Identities=17% Similarity=0.245 Sum_probs=267.6
Q ss_pred heeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEEC
Q 001386 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1088)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1088)
..++|+||...|.++.|++|.+ .++++|.||.+.|||.-|....+-. +-....|-.+||+
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~hai-------------------pl~s~WVMtCA~s 106 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHAI-------------------PLPSSWVMTCAYS 106 (343)
T ss_pred eEEEecccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeEE-------------------ecCceeEEEEEEC
Confidence 3489999999999999999999 5899999999999999998877653 3367899999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCC---cccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEec
Q 001386 406 PDGSLLGVAYSKHIVQLYAYHGGS---DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1088)
Q Consensus 406 ~dg~~las~~~dg~i~vwd~~~~~---~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~ 482 (1088)
|.|+++|.|+-|+...||++.+.+ ..+..+++.+|++.+.|+.|.+|++ |+|+|.|.+..+||+++|+.+..|.
T Consensus 107 PSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~ 183 (343)
T KOG0286|consen 107 PSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFH 183 (343)
T ss_pred CCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEec
Confidence 999999999999999999998652 2344457899999999999999876 8999999999999999999999999
Q ss_pred cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001386 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 562 (1088)
+|.+.|.++.+.|+ +++.+++|+-|+..++||++.+.....+.+|...|.+++|.|+|.-+++|+. +++.++||+
T Consensus 184 GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyDl 258 (343)
T KOG0286|consen 184 GHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYDL 258 (343)
T ss_pred CCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEee
Confidence 99999999999775 7789999999999999999999999999999999999999999999999975 667999999
Q ss_pred CCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC
Q 001386 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1088)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1088)
+..+.+..+.... ....|++++|+..|++|++|..|.++.+||.-.++.+..+.+|.+ .|.++..+|||.-+++|+.
T Consensus 259 RaD~~~a~ys~~~-~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgSW 335 (343)
T KOG0286|consen 259 RADQELAVYSHDS-IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGSW 335 (343)
T ss_pred cCCcEEeeeccCc-ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecch
Confidence 9999988887443 446899999999999999999999999999999999999997765 6999999999999999999
Q ss_pred CCcEEEEe
Q 001386 643 ENRIKILE 650 (1088)
Q Consensus 643 dg~i~iwd 650 (1088)
|..++||.
T Consensus 336 Ds~lriW~ 343 (343)
T KOG0286|consen 336 DSTLRIWA 343 (343)
T ss_pred hHheeecC
Confidence 99999994
No 23
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=7.4e-38 Score=330.25 Aligned_cols=622 Identities=13% Similarity=0.104 Sum_probs=409.6
Q ss_pred heeecccCCCCceeeeecCCCC--eEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEE
Q 001386 326 VAQTLIEGSSSPMSMDFHPVQH--TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1088)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~--~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1088)
...+|.||..+|+|+.|-|+.+ -.+++|+.|+.|++|.+.......... +.+|...+. +
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~-----------------~~g~~~~~~--c 106 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYT-----------------IQGHCKECV--C 106 (764)
T ss_pred eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEe-----------------ecCcceeEE--E
Confidence 4467899999999999998775 147899999999999998443332211 445555554 4
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCccc-ceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC--ceeEE
Q 001386 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG--SRTYS 480 (1088)
Q Consensus 404 ~s~dg~~las~~~dg~i~vwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~--~~~~~ 480 (1088)
++...........|+++.+||.+..+... ....+..-..-..|+++.++.+..+++.|+.+..|.++.-.++ +.+..
T Consensus 107 v~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~e 186 (764)
T KOG1063|consen 107 VVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAE 186 (764)
T ss_pred EEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEE
Confidence 44333333333789999999996554111 0111222222345677778666557788888888888875544 34578
Q ss_pred eccCCccEEEEeeeeeCC-ceEEEEEecCCeEEEEECCCCC-----------------c----e----------EEecCC
Q 001386 481 FEGHGAPVYSLCPHAKEN-IHFIFSISVDGKIKAWLYDSLG-----------------A----R----------VDYDAP 528 (1088)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~-----------------~----~----------~~~~~~ 528 (1088)
+.||...|.+++|..... ..+|+++|.|..||+|.+.... . . ..+.+|
T Consensus 187 l~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH 266 (764)
T KOG1063|consen 187 LEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH 266 (764)
T ss_pred eeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc
Confidence 899999999999975544 5689999999999999764322 0 0 012378
Q ss_pred CCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC--ceeEEEeccc--cccccEEEEEEeCCCCEEEEEeCCCcEEE
Q 001386 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQ--LQHNSVSVVHFDTAKDQILAAGDDHVIKI 604 (1088)
Q Consensus 529 ~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~s~dg~i~i 604 (1088)
...|+++.|+|.+..|++++. +.++.+|...+. --+...+--. +.........|+|+++.+++-+..|..++
T Consensus 267 eDWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 267 EDWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL 342 (764)
T ss_pred ccceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence 889999999999988888876 445999987643 3333222111 11245788899999999999999999999
Q ss_pred EEcCC-CeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCC----CcccccccccCcceeeeecCCCcce
Q 001386 605 WDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES----NSVDAAGVLSDNLRKLSVNPISTVT 679 (1088)
Q Consensus 605 wd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~p~~~~~ 679 (1088)
|...+ .......-..++...|..++|+|.|.+|++.+.|.+-|++-.-.. ..+...+.|...++|+++-+.
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~---- 418 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE---- 418 (764)
T ss_pred EeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC----
Confidence 98332 333444444466778999999999999999999999999865522 234445667778888887631
Q ss_pred eccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeec------CCccccccEEEEEEecCCceEEEec
Q 001386 680 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL------PSKVKANKISRLTYNNGGQAIFALA 753 (1088)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~------~~~~~~~~i~~~~~s~~g~~l~~~~ 753 (1088)
...+++|.....+|+++....--..+..+.- ........|..+-.|.+--+.- -.
T Consensus 419 ------------------~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~-e~ 479 (764)
T KOG1063|consen 419 ------------------DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPG-ET 479 (764)
T ss_pred ------------------CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccc-cc
Confidence 3345666667777887743211100000000 0011222333333333221100 11
Q ss_pred cccce-EEEE-ccCCCCCCCCCCCCcccCCCCCCcce-----eeccCCCCCCCCeeEEEEecCCCEEEEEeC------Cc
Q 001386 754 SNGVH-LMWR-WPRNDLTLSTEVPPRLYQPRHGPQFM-----VNDTTDSNSQEAVPCFALSKNDAYLFSASG------GV 820 (1088)
Q Consensus 754 ~dg~v-~iw~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d------g~ 820 (1088)
.+|.. ..|. ...... ...+..+....+++ ....+..+|...|.+++.+|+|+++|++.. ..
T Consensus 480 ~~G~~~~~~~et~~~~~------p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAv 553 (764)
T KOG1063|consen 480 NTGGEAAVCAETPLAAA------PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAV 553 (764)
T ss_pred ccccccceeeecccccC------chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceE
Confidence 11111 1111 000000 00000111111011 111122369999999999999999999962 34
Q ss_pred EEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee----eeeeccccCCeeEEEECCCCCE
Q 001386 821 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV----ISKLEGHSKRVTGLVFSDALNI 896 (1088)
Q Consensus 821 i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~----~~~l~~h~~~V~~l~~s~dg~~ 896 (1088)
|++|+..+...+..+.+|+-.|+.++||| |+++|++.+.|.++.+|....... ....+.|+.-|.+..|+||+.+
T Consensus 554 I~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~ 632 (764)
T KOG1063|consen 554 IRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKY 632 (764)
T ss_pred EEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccce
Confidence 99999999999999999999999999999 899999999999999999854321 2346789999999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCC----CC-EEEEE-eCCeEEEEEcCcceee----
Q 001386 897 LVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD----QT-RFLLV-HETHLAIYEAEELTCL---- 966 (1088)
Q Consensus 897 las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d----g~-~l~~~-~d~~i~vwd~~~~~~~---- 966 (1088)
+||+|.|++|++|......-. .+... ........|+.+++.|- .. .+++| ..|.|.+|....-...
T Consensus 633 FaTaSRDK~VkVW~~~~~~d~---~i~~~-a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~ 708 (764)
T KOG1063|consen 633 FATASRDKKVKVWEEPDLRDK---YISRF-ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVG 708 (764)
T ss_pred eEEecCCceEEEEeccCchhh---hhhhh-chhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccce
Confidence 999999999999999875211 11110 11122246888888762 22 45556 5589999985511110
Q ss_pred -------eeeecCCCcCEEEEEEeeC----------CCEEEEEeCCCcEEEEEcC
Q 001386 967 -------KQWFPISSVPISQATFSCD----------CRMVFTSFVDGTLSIHEAS 1004 (1088)
Q Consensus 967 -------~~~~~~h~~~v~~l~fs~d----------g~~l~s~s~dg~v~vwd~~ 1004 (1088)
..-..+|...|..+.|+|- ...|++|++|..++++++.
T Consensus 709 ~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 709 TFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred eeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 1112356889999999974 2347999999999999864
No 24
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.6e-38 Score=342.76 Aligned_cols=278 Identities=17% Similarity=0.269 Sum_probs=243.7
Q ss_pred cCCCchhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceee---eceeee---------eecccccc
Q 001386 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI---RNFKVW---------DIGACSML 386 (1088)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~---~~~~~~---------d~~~~~~~ 386 (1088)
...+|..|..+...-...++|..||+|++ +||.|..|..|++|.+...+.... ..+..- |.......
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence 67789999999987777999999999999 899999999999999986431110 000000 11111122
Q ss_pred ceeeeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCc
Q 001386 387 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 466 (1088)
Q Consensus 387 ~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~ 466 (1088)
.....+.||.++|..+.|+||.++|++++.|+++++|.+.+..++- .++||..+|+++.|+|-|- +++|+|.|++
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~t 516 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQT 516 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCce
Confidence 3334589999999999999999999999999999999999986554 6889999999999999998 8999999999
Q ss_pred EEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEE
Q 001386 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1088)
Q Consensus 467 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 546 (1088)
.++|......+++.+.+|-+.|.|+.|+|+ ..++++||.|.+||+||+.++..+..+.+|..+|.+++|||+|++|++
T Consensus 517 ArLWs~d~~~PlRifaghlsDV~cv~FHPN--s~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHPN--SNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred eeeeecccCCchhhhcccccccceEEECCc--ccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence 999999999999999999999999999875 469999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe
Q 001386 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1088)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1088)
++. ++.|.+||+.+++.+..+.+|. +.|.++.|+.+|..|++|+.|.+|++||+..-.
T Consensus 595 g~e----d~~I~iWDl~~~~~v~~l~~Ht---~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 595 GDE----DGLIKIWDLANGSLVKQLKGHT---GTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred ccc----CCcEEEEEcCCCcchhhhhccc---CceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 975 6669999999999999999998 999999999999999999999999999987543
No 25
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=3.2e-36 Score=324.51 Aligned_cols=554 Identities=14% Similarity=0.167 Sum_probs=407.0
Q ss_pred ccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCE
Q 001386 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1088)
Q Consensus 331 ~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~ 410 (1088)
..+.++|+|++-+.+-- ++|.| ..|.+|. .|+.+. ....+|.+.|.-+. |-|.+
T Consensus 73 ~~lp~~I~alas~~~~v-y~A~g---~~i~~~~--rgk~i~------------------~~~~~~~a~v~~l~--~fGe~ 126 (910)
T KOG1539|consen 73 KPLPDKITALASDKDYV-YVASG---NKIYAYA--RGKHIR------------------HTTLLHGAKVHLLL--PFGEH 126 (910)
T ss_pred CCCCCceEEEEecCceE-EEecC---cEEEEEE--ccceEE------------------EEeccccceEEEEe--eecce
Confidence 36777999998877653 34433 4566654 443332 12556777777665 34889
Q ss_pred EEEEeCCCEEEEEEccCC-CcccceeEec-cCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccE
Q 001386 411 LGVAYSKHIVQLYAYHGG-SDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1088)
Q Consensus 411 las~~~dg~i~vwd~~~~-~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v 488 (1088)
++++..++.+.||+..++ +.......+. .....|+++. +|..--..++.|+.+|.+.+|++++++.++++.++...|
T Consensus 127 lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~I 205 (910)
T KOG1539|consen 127 LIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRI 205 (910)
T ss_pred EEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccce
Confidence 999999999999999985 2211111222 2222376664 554322258889999999999999999999999999999
Q ss_pred EEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCcee
Q 001386 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1088)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1088)
+++.-+|.- ..++.|..+|+|.+++++..+.+..+....+.|++++|..||..+.+.+. ..|.+.+||+...+.+
T Consensus 206 T~ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDLe~kkl~ 280 (910)
T KOG1539|consen 206 TAIEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDLEKKKLI 280 (910)
T ss_pred eEeccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEcCCCeee
Confidence 999775544 58999999999999999999999999988899999999999998777653 2566999999988887
Q ss_pred EEEe-ccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCC--C--eeeEEEeCCCCCCCCceEEEe-cCCCEEEEEeC
Q 001386 569 RTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--V--QLLTTIDAGGGLPENPRICFN-KNGTLLAVIAN 642 (1088)
Q Consensus 569 ~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~--~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~ 642 (1088)
.... .|. +.+....|-|....+++++.|..+++|=.++ | +.++.-.+ +..+..++.|. .+|..+.+++.
T Consensus 281 ~v~~nah~---~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~G--Hs~Pp~~irfy~~~g~~ilsa~~ 355 (910)
T KOG1539|consen 281 NVTRNAHY---GSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGG--HSAPPSCIRFYGSQGHFILSAKQ 355 (910)
T ss_pred eeeecccc---CCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccC--CCCCchheeeeccCcEEEEeccc
Confidence 7766 454 7899999999999999999999998885543 3 23333333 34467889988 68999999999
Q ss_pred CCcEEEEeCCCCCccccccc-------ccCcce---eeeecCCCcceeccccCCceeecCC-CCCCCCcccccccCccce
Q 001386 643 ENRIKILETPESNSVDAAGV-------LSDNLR---KLSVNPISTVTGAGIANGSVSVNED-PKEDVKPEISVEAENKSE 711 (1088)
Q Consensus 643 dg~i~iwd~~~~~~~~~~~~-------~~~~v~---~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~d~~i~ 711 (1088)
|++++.+++.....-+.+.. ..-.+. ...+.| .. ..++... .....+.+...-.+...+
T Consensus 356 Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~---i~-------~fa~~~~RE~~W~Nv~~~h~~~~~~~ 425 (910)
T KOG1539|consen 356 DRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPP---IV-------EFAFENAREKEWDNVITAHKGKRSAY 425 (910)
T ss_pred CcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCc---ce-------eeecccchhhhhcceeEEecCcceEE
Confidence 99999988764322111111 000000 000000 00 0011000 022344455555566788
Q ss_pred eccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeec
Q 001386 712 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVND 791 (1088)
Q Consensus 712 vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1088)
.|+......++...-..+.......+++++.++.|++.+.|.+.|.|.+|+++.+-...+.
T Consensus 426 tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf------------------- 486 (910)
T KOG1539|consen 426 TWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSF------------------- 486 (910)
T ss_pred EEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccc-------------------
Confidence 8997655544433322222234567899999999999999999999999998876542111
Q ss_pred cCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcC
Q 001386 792 TTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR 870 (1088)
Q Consensus 792 ~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~ 870 (1088)
.....|..+|+.++...-++.+++++ +|.+.+||.++...+..+. -...++++..+. ...++|.+..|-.|+++|..
T Consensus 487 ~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr-~s~l~a~~~ddf~I~vvD~~ 564 (910)
T KOG1539|consen 487 GDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHR-VSDLLAIALDDFSIRVVDVV 564 (910)
T ss_pred ccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeee-hhhhhhhhcCceeEEEEEch
Confidence 11235999999999988888888887 9999999999888777776 556788888888 67899999999999999999
Q ss_pred CceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE
Q 001386 871 SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 950 (1088)
Q Consensus 871 ~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~ 950 (1088)
+.+.++.|.||.+.|++++|||||++|++++.|++|++||+.++.......+. .+..++.|||+|.+||++
T Consensus 565 t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd---------~~~~sls~SPngD~LAT~ 635 (910)
T KOG1539|consen 565 TRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD---------SPCTSLSFSPNGDFLATV 635 (910)
T ss_pred hhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC---------CcceeeEECCCCCEEEEE
Confidence 99999999999999999999999999999999999999999997654433222 257899999999999995
Q ss_pred -eC-CeEEEEEcC
Q 001386 951 -HE-THLAIYEAE 961 (1088)
Q Consensus 951 -~d-~~i~vwd~~ 961 (1088)
.| ..|++|.=.
T Consensus 636 Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 636 HVDQNGIYLWSNK 648 (910)
T ss_pred EecCceEEEEEch
Confidence 34 579999743
No 26
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.8e-37 Score=291.25 Aligned_cols=287 Identities=15% Similarity=0.172 Sum_probs=265.1
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEE
Q 001386 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vw 470 (1088)
+|+||.+.|.++.|++|+++|++++.||.+.|||.-+..... .+.-....|..++|+|.|+ +++.|+.|+...||
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY 124 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence 389999999999999999999999999999999998875444 4556678999999999999 89999999999999
Q ss_pred eCCCC------ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEcc-CCCE
Q 001386 471 DAVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRR 543 (1088)
Q Consensus 471 d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~g~~ 543 (1088)
++.+. ...+.+.+|.+.+.++.|.. ...|++++.|.+..+||+++++....+.+|.+.|.+++++| +++.
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d---D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD---DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcC---CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 99855 34567899999999999854 34899999999999999999999999999999999999999 9999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCC
Q 001386 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1088)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1088)
+++++. +...++||++.+.++++|.+|. ..|++++|.|+|.-+++|++|++.++||++..+.+..+.......
T Consensus 202 FvSg~c----D~~aklWD~R~~~c~qtF~ghe---sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~ 274 (343)
T KOG0286|consen 202 FVSGGC----DKSAKLWDVRSGQCVQTFEGHE---SDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIIC 274 (343)
T ss_pred EEeccc----ccceeeeeccCcceeEeecccc---cccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccC
Confidence 999986 4559999999999999999999 999999999999999999999999999999999999998877777
Q ss_pred CCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccc
Q 001386 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1088)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 703 (1088)
.|++++||..|++|.+|..|.++.+||.-.++....+.+|.+.|.++.++ |||..+++
T Consensus 275 gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s----------------------~DG~av~T 332 (343)
T KOG0286|consen 275 GITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVS----------------------PDGMAVAT 332 (343)
T ss_pred CceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEEC----------------------CCCcEEEe
Confidence 89999999999999999999999999999999999999999999999998 67888999
Q ss_pred cccCccceecc
Q 001386 704 VEAENKSEVEK 714 (1088)
Q Consensus 704 ~~~d~~i~vw~ 714 (1088)
|+-|.++++|.
T Consensus 333 gSWDs~lriW~ 343 (343)
T KOG0286|consen 333 GSWDSTLRIWA 343 (343)
T ss_pred cchhHheeecC
Confidence 99999999994
No 27
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-35 Score=318.36 Aligned_cols=585 Identities=16% Similarity=0.239 Sum_probs=406.5
Q ss_pred cccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCC
Q 001386 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1088)
Q Consensus 330 l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~ 409 (1088)
++..+..|..++|+|... ++.++-.+|.|.+||..-|.++.. +.+|.++|+.++|+|++.
T Consensus 5 fEskSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qp 64 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQP 64 (1202)
T ss_pred hhcccccccceecCCCCC-EEEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCC
Confidence 445567999999999998 677888899999999999988865 778999999999999999
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEE
Q 001386 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~ 489 (1088)
++++|++|..|+||+.++.+++. ++.||-..|..+.|++.-. +++|+|.|.+|+||++.+++++..+.||...|.
T Consensus 65 lFVSGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVM 139 (1202)
T KOG0292|consen 65 LFVSGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVM 139 (1202)
T ss_pred eEEecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEE
Confidence 99999999999999999987766 7889999999999999888 899999999999999999999999999999999
Q ss_pred EEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeE
Q 001386 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1088)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1088)
|..|+|..| .++++|.|.+||+||+...+....-.+ ++.=...+..+. .-++-....-...
T Consensus 140 cAqFhptED--lIVSaSLDQTVRVWDisGLRkk~~~pg------~~e~~~~~~~~~-----------~dLfg~~DaVVK~ 200 (1202)
T KOG0292|consen 140 CAQFHPTED--LIVSASLDQTVRVWDISGLRKKNKAPG------SLEDQMRGQQGN-----------SDLFGQTDAVVKH 200 (1202)
T ss_pred eeccCCccc--eEEEecccceEEEEeecchhccCCCCC------Cchhhhhccccc-----------hhhcCCcCeeeee
Confidence 999998765 899999999999999976543322211 000001111110 0011111122345
Q ss_pred EEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEE
Q 001386 570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 649 (1088)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 649 (1088)
.+.||. ..|+-++|+|.-..+++|++|..|++|.+..-+.-..-...++...|.++-|+|...++++.+.|++|+||
T Consensus 201 VLEGHD---RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVw 277 (1202)
T KOG0292|consen 201 VLEGHD---RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVW 277 (1202)
T ss_pred eecccc---cccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEE
Confidence 678888 88999999999999999999999999998765544333334556689999999999999999999999999
Q ss_pred eCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCC-----CCCCCcccccccCccceeccccccCCCcce
Q 001386 650 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDP-----KEDVKPEISVEAENKSEVEKPLFARPSECQ 724 (1088)
Q Consensus 650 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~ 724 (1088)
|+.....+++++...+..+.++.+|.....+.+-..|.+.|-... .-.++.++-.- |..|+-+|+.+.+.....
T Consensus 278 Dm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvk-d~~i~~~d~~t~~d~~v~ 356 (1202)
T KOG0292|consen 278 DMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVK-DRFIRSYDLRTQKDTAVA 356 (1202)
T ss_pred ecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEc-cceEEeeeccccccceeE
Confidence 999999999999999999999999999999999999988874431 12233333333 778888887765555555
Q ss_pred eeecCCccccccEEEEEEecCCceEEEec--cccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCee
Q 001386 725 SLLLPSKVKANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 802 (1088)
Q Consensus 725 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 802 (1088)
.+..+.. ...++.++.++|....++.++ .+|...++.++....... .+... -......
T Consensus 357 ~lr~~g~-~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~-----------~~~~~--------~k~tG~~ 416 (1202)
T KOG0292|consen 357 SLRRPGT-LWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVS-----------DGKDV--------KKGTGEG 416 (1202)
T ss_pred eccCCCc-ccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccC-----------Cchhh--------hcCCCCc
Confidence 5443332 335778899999877665553 356666766654322000 00000 0111222
Q ss_pred EEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccc
Q 001386 803 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS 882 (1088)
Q Consensus 803 ~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~ 882 (1088)
++-...++-.+..-++..+.+-++.+ +..+.+... .....+-+.- .|.+|+. ....|.+||++..+.+..++ .
T Consensus 417 a~fvarNrfavl~k~~~~v~ik~l~N-~vtkkl~~~-~~~~~IF~ag-~g~lll~--~~~~v~lfdvQq~~~~~si~--~ 489 (1202)
T KOG0292|consen 417 ALFVARNRFAVLDKSNEQVVIKNLKN-KVTKKLLLP-ESTDDIFYAG-TGNLLLR--SPDSVTLFDVQQKKKVGSIK--V 489 (1202)
T ss_pred eEEEEecceEEEEecCcceEEecccc-hhhhcccCc-ccccceeecc-CccEEEE--cCCeEEEEEeecceEEEEEe--c
Confidence 23233332222222244455555442 222223222 2334455554 5555553 34579999999888877775 3
Q ss_pred CCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCc
Q 001386 883 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 962 (1088)
Q Consensus 883 ~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~ 962 (1088)
..|.-+.||+|..++|--+. .+|.|.+.+- ..+....... .|.+-+|..+|-+|.+..+..= |-+.+
T Consensus 490 s~vkyvvws~dm~~vAll~K-h~i~i~~kkL------~l~~sihEti----riksgawde~gVfiYtT~nHik--Yal~~ 556 (1202)
T KOG0292|consen 490 SKVKYVVWSNDMSRVALLSK-HTITIADKKL------ELLCSIHETI----RIKSGAWDEDGVFIYTTLNHIK--YALEN 556 (1202)
T ss_pred CceeEEEEcCccchhhhccc-ceEEEEecch------hheecchhee----EeeeceeccCceEEEEehhhhh--hhhcc
Confidence 56889999999998887664 5688887653 1222222211 4778899999988877543321 11111
Q ss_pred ce--eeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCce
Q 001386 963 LT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1008 (1088)
Q Consensus 963 ~~--~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~ 1008 (1088)
|. .++++ ..++.-.+ -.|..++.-..|+.+.+.+++.-+.
T Consensus 557 GD~GIikTL----d~~iyitk--v~gn~V~cl~rd~~~~~~~IDptEy 598 (1202)
T KOG0292|consen 557 GDSGIIKTL----DKPIYITK--VKGNKVFCLNRDGEIECLTIDPTEY 598 (1202)
T ss_pred CCcceEEec----ccceEEEE--eeCCEEEEEecCCCeEEEeechHHH
Confidence 11 12221 11222222 2477777778888888888776543
No 28
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.9e-37 Score=283.16 Aligned_cols=293 Identities=16% Similarity=0.280 Sum_probs=251.4
Q ss_pred CCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEc
Q 001386 346 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAY 425 (1088)
Q Consensus 346 g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~ 425 (1088)
..-+|++++.|.+|++|...+|.+.++ +....+.|..+...||+++||+++... |++||+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~ 68 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDL 68 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCCe-eEEEEc
Confidence 345899999999999999999999887 334678999999999999999997665 999999
Q ss_pred cCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEE
Q 001386 426 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI 505 (1088)
Q Consensus 426 ~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 505 (1088)
.++..- +..++.+|...|+++.|..||+ .+++||+||+++|||++...+.+.+. |..+|+++.++|+. .-|++|
T Consensus 69 ~S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ--teLis~ 142 (311)
T KOG0315|consen 69 NSNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ--TELISG 142 (311)
T ss_pred cCCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc--ceEEee
Confidence 998753 5668999999999999999999 89999999999999999977777776 77999999997754 579999
Q ss_pred ecCCeEEEEECCCCCceEEe-cCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCc------eeEEEecccccc
Q 001386 506 SVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA------IKRTYQGLQLQH 578 (1088)
Q Consensus 506 ~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~------~~~~~~~~~~~~ 578 (1088)
..+|.|++||+........+ ......|.++...|||.+++.+.. .+..++|++-++. ++..++.|.
T Consensus 143 dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~--- 215 (311)
T KOG0315|consen 143 DQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHN--- 215 (311)
T ss_pred cCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheeccc---
Confidence 99999999999987665544 344558999999999999999864 6669999987653 344556666
Q ss_pred ccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC-eeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcc
Q 001386 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 657 (1088)
Q Consensus 579 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 657 (1088)
+-+..+.++||+++|+++|.|.+++||+.++. +....+..+ ...+..++||.||.+|++|+.|+.+++|++..++.+
T Consensus 216 ~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh--~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 216 GHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH--QRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred ceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecC--CceEEeeeeccCccEEEecCCCCceeecccccCcee
Confidence 88999999999999999999999999999988 444444444 457899999999999999999999999999999999
Q ss_pred cccccccCcceeeeec
Q 001386 658 DAAGVLSDNLRKLSVN 673 (1088)
Q Consensus 658 ~~~~~~~~~v~~~~~~ 673 (1088)
....+|.....|+++.
T Consensus 294 ~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 294 RQYQGHHKAAVCVALN 309 (311)
T ss_pred eecCCcccccEEEEee
Confidence 9999998888777654
No 29
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-35 Score=280.13 Aligned_cols=297 Identities=17% Similarity=0.190 Sum_probs=246.7
Q ss_pred ccccccEEEEEEecCC-ceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecC
Q 001386 731 KVKANKISRLTYNNGG-QAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 809 (1088)
Q Consensus 731 ~~~~~~i~~~~~s~~g-~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 809 (1088)
.+|.+.|+.++..+.+ ..+++++.|..+.+|++.... ...|..+.. +. +|...|..++.++|
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd-------------~~~G~~~r~--~~--GHsH~v~dv~~s~d 74 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDD-------------IKYGVPVRR--LT--GHSHFVSDVVLSSD 74 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCc-------------cccCceeee--ee--ccceEecceEEccC
Confidence 4599999999998874 556778889999999987652 334443333 33 49999999999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecc-ccCCeeE
Q 001386 810 DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTG 887 (1088)
Q Consensus 810 g~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~-h~~~V~~ 887 (1088)
|++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.+++|+.|.+|.+|++........... |++-|.|
T Consensus 75 g~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVsc 153 (315)
T KOG0279|consen 75 GNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSC 153 (315)
T ss_pred CceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEE
Confidence 99999998 99999999999999999999999999999999 899999999999999999886544443333 3889999
Q ss_pred EEECCC--CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcce
Q 001386 888 LVFSDA--LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELT 964 (1088)
Q Consensus 888 l~~s~d--g~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~ 964 (1088)
+.|+|+ ..+++++|.|++|++||+.+ .+....+.+|.. .++.+++||||..+++ +.||.+.+||++.++
T Consensus 154 vrfsP~~~~p~Ivs~s~DktvKvWnl~~-----~~l~~~~~gh~~---~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k 225 (315)
T KOG0279|consen 154 VRFSPNESNPIIVSASWDKTVKVWNLRN-----CQLRTTFIGHSG---YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK 225 (315)
T ss_pred EEEcCCCCCcEEEEccCCceEEEEccCC-----cchhhccccccc---cEEEEEECCCCCEEecCCCCceEEEEEccCCc
Confidence 999998 78999999999999999998 445555666665 8999999999999999 688999999999999
Q ss_pred eeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEE
Q 001386 965 CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV 1044 (1088)
Q Consensus 965 ~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~ 1044 (1088)
++.. .+|...|.+++|+|+.-+|+.+ .+..|+|||+.++..+..+.+...-+ .........++++|++ ||..|+.
T Consensus 226 ~lys--l~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~-dG~tLf~ 300 (315)
T KOG0279|consen 226 NLYS--LEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA-DGQTLFA 300 (315)
T ss_pred eeEe--ccCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-CCcEEEe
Confidence 9765 3578999999999987666655 56669999999999887776433222 1223345568899999 9999999
Q ss_pred EeCCCcEEEEeCCC
Q 001386 1045 GLTNGEVYVIEPNE 1058 (1088)
Q Consensus 1045 ~~~dg~v~~w~l~~ 1058 (1088)
|..|+.|++|.+..
T Consensus 301 g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 301 GYTDNVIRVWQVAK 314 (315)
T ss_pred eecCCcEEEEEeec
Confidence 99999999999853
No 30
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-34 Score=300.43 Aligned_cols=459 Identities=15% Similarity=0.216 Sum_probs=344.4
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+..+...|.++.|+|...+++++-.+|.|.|||.++...++ .+.-..-+|.+..|-+..+ .+++|+.|..|+|++
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 34488999999999999999999999999999999988777 4556777999999998877 899999999999999
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCC-CceEEecCCCCceEEEEEcc-CCCEEEEEee
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGT 549 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~ 549 (1088)
..+++.++.|..|...|.+++.||.. .+++++|.|-+|++||++.. .+..++.+|.+-|++++|.| |.+.+++++.
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 99999999999999999999998864 69999999999999999875 46779999999999999999 6678888887
Q ss_pred CCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCC--CCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCce
Q 001386 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1088)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1088)
+.+|.+|.+.+..+..++.+|. ..|+++.+-+- ..++++|++|.+|+|||.++..+++++.+|.+ .|..
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHe---kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~ 232 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHE---KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSF 232 (794)
T ss_pred ----cccEEEEEcCCCCCceeeeccc---cCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceE
Confidence 5569999999999999999999 89999999764 47999999999999999999999999998865 6999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccC
Q 001386 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1088)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 707 (1088)
+.|+|.-.++++|+.||+++||+..+-+....+....+
T Consensus 233 v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle------------------------------------------ 270 (794)
T KOG0276|consen 233 VFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE------------------------------------------ 270 (794)
T ss_pred EEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCc------------------------------------------
Confidence 99999999999999999999999887665555444333
Q ss_pred ccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcc
Q 001386 708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQF 787 (1088)
Q Consensus 708 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1088)
++.+++-.+.+..++.|..+|.+.+ ++
T Consensus 271 ----------------------------RvW~I~~~k~~~~i~vG~Deg~i~v-~l------------------------ 297 (794)
T KOG0276|consen 271 ----------------------------RVWCIAAHKGDGKIAVGFDEGSVTV-KL------------------------ 297 (794)
T ss_pred ----------------------------eEEEEeecCCCCeEEEeccCCcEEE-Ec------------------------
Confidence 3444444444555555555554443 10
Q ss_pred eeeccCCCCCCCCeeEEEEecCCCEEEEEeCC--cEEEE------EcCCceeEE----EecCCCCCeEEEEEcCCCCcEE
Q 001386 788 MVNDTTDSNSQEAVPCFALSKNDAYLFSASGG--VISLY------IVMTFKTIL----TIMPPSPTATSLAFNPHDNNVI 855 (1088)
Q Consensus 788 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg--~i~iw------d~~~~~~~~----~~~~~~~~i~~l~~sp~d~~~l 855 (1088)
......+.+++.|+.+-+.... .+.+- ++..|+++. .+-...-....++-+| +|+++
T Consensus 298 ----------greeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-NGrfV 366 (794)
T KOG0276|consen 298 ----------GREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-NGRFV 366 (794)
T ss_pred ----------cCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCC-CCcEE
Confidence 1111123334444333222110 01111 233333321 1111112235678899 88887
Q ss_pred EEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCe
Q 001386 856 AIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSE 935 (1088)
Q Consensus 856 asg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 935 (1088)
+++ .||.-.||..-.. -..+.+.-....|++|....|+--.++.|+++ +..+.. +.... -
T Consensus 367 ~Vc-gdGEyiIyTala~-----RnK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~-----ksi~~-------~ 426 (794)
T KOG0276|consen 367 VVC-GDGEYIIYTALAL-----RNKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEH-----KSIRP-------D 426 (794)
T ss_pred EEe-cCccEEEEEeeeh-----hhcccccceeEEEcCCCCeEEEEecCCceEEE--ecceec-----ccccc-------c
Confidence 766 5888888863211 11245666788999998888888778889888 432211 11110 1
Q ss_pred EEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCC
Q 001386 936 THIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 996 (1088)
Q Consensus 936 ~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg 996 (1088)
..+.+--.|.+|.+.+++.+++||..+++.++.+-. ....+.|+.+|.+++.++.|.
T Consensus 427 ~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v----~~k~v~w~d~g~lVai~~d~S 483 (794)
T KOG0276|consen 427 MSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEV----TSKHVYWSDNGELVAIAGDDS 483 (794)
T ss_pred cceeeecCCceEEEEeCCeEEEEEcccceEEEEEee----ccceeEEecCCCEEEEEecCc
Confidence 113333456777778899999999999999988542 356789999999998887664
No 31
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-36 Score=295.34 Aligned_cols=292 Identities=22% Similarity=0.330 Sum_probs=268.0
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
+..+.|.||...|+.+-|+|+-. +.++++.|++|++||..+|+.... ++||...|..++|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------------LrGHt~sv~di~~ 158 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------------LRGHTDSVFDISF 158 (406)
T ss_pred CchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh-------------------hhccccceeEEEE
Confidence 66788899999999999999987 899999999999999999998765 8999999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccC
Q 001386 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 484 (1088)
+..|++||+++.|-.+++||..+- ......+.+|.-.|.++.|-|.|. ++++++.|.+|+.|++.+|.+++++.+|
T Consensus 159 ~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h 234 (406)
T KOG0295|consen 159 DASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGH 234 (406)
T ss_pred ecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCc
Confidence 999999999999999999999863 233346779999999999999998 8999999999999999999999999999
Q ss_pred CccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCC---------------CEEEEEee
Q 001386 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG---------------RRLFSCGT 549 (1088)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g---------------~~l~~~~~ 549 (1088)
...|..+.+ ..||.++++++.|.+|++|-+.+.++...+..|..+|.+++|.|.. +++.+++.
T Consensus 235 ~ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr 312 (406)
T KOG0295|consen 235 SEWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR 312 (406)
T ss_pred hHhEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc
Confidence 999998887 6789999999999999999999999999999999999999997642 35666654
Q ss_pred CCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEE
Q 001386 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1088)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1088)
+++|++||+.+|.++.++.+|. ..|..++|+|.|+||+++.+|+++++||+.+++++..+..|.+ .++++.
T Consensus 313 ----DktIk~wdv~tg~cL~tL~ghd---nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lD 383 (406)
T KOG0295|consen 313 ----DKTIKIWDVSTGMCLFTLVGHD---NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLD 383 (406)
T ss_pred ----cceEEEEeccCCeEEEEEeccc---ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEe
Confidence 6679999999999999999999 9999999999999999999999999999999999999998766 589999
Q ss_pred EecCCCEEEEEeCCCcEEEEeC
Q 001386 630 FNKNGTLLAVIANENRIKILET 651 (1088)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iwd~ 651 (1088)
|..+..++++|+-|.++++|..
T Consensus 384 fh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 384 FHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cCCCCceEEeccccceeeeeec
Confidence 9999999999999999999964
No 32
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.3e-32 Score=279.75 Aligned_cols=535 Identities=13% Similarity=0.162 Sum_probs=380.1
Q ss_pred eeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC
Q 001386 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1088)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~ 406 (1088)
+.-++|+. -=..+-+-|.|..+..++ +.+.+++++...+. .+.||+..|.|++.+|
T Consensus 59 vygYRG~d-cR~Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr--------------------~y~GH~ddikc~~vHP 114 (626)
T KOG2106|consen 59 VYGYRGVD-CRNNLYLLPTGELVYFVA---AVGVLYNWEERSQR--------------------HYLGHNDDIKCMAVHP 114 (626)
T ss_pred EEeeccee-eeceeEEccCccEEEEec---cEEEEEeehhhhcc--------------------cccCCCCceEEEeecC
Confidence 34445554 233455677777433333 45667776543222 1778999999999999
Q ss_pred CCCEEEEEeCCC--------EEEEEEccCCCcccceeEeccCCCCEEEEEecCCC--CcEEEEEEeCCCcEEEEeCCCCc
Q 001386 407 DGSLLGVAYSKH--------IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPC--KQISVITCGDDKTIKVWDAVTGS 476 (1088)
Q Consensus 407 dg~~las~~~dg--------~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~--~~l~l~s~s~d~~i~vwd~~~~~ 476 (1088)
|.-.+|+|-..| .+++||..+-. .+..+......|+|++|++-+ ..+..+--+.+..+.|||+..+.
T Consensus 115 dri~vatGQ~ag~~g~~~~phvriWdsv~L~---TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~ 191 (626)
T KOG2106|consen 115 DRIRVATGQGAGTSGRPLQPHVRIWDSVTLS---TLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKA 191 (626)
T ss_pred CceeeccCcccccCCCcCCCeeeecccccce---eeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhh
Confidence 999999875444 49999977654 333566677889999999753 32233334556789999999998
Q ss_pred eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEE---ecCC-CCceEEEEEccCCCEEEEEeeCCC
Q 001386 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD---YDAP-GLGCTRMAYSANGRRLFSCGTSKE 552 (1088)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~-~~~v~~~~~s~~g~~l~~~~~~~~ 552 (1088)
.....+.....|....|+|... .++.....|.+.+|+++.+..... +..+ ...|.|++|.++|..+-. +
T Consensus 192 ~~~~vk~sne~v~~a~FHPtd~--nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTg-----D 264 (626)
T KOG2106|consen 192 KLGPVKTSNEVVFLATFHPTDP--NLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITG-----D 264 (626)
T ss_pred ccCcceeccceEEEEEeccCCC--cEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEee-----c
Confidence 8877777788889999988753 455555678999999987765432 2222 257999999999987643 4
Q ss_pred CceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec
Q 001386 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1088)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1088)
.++.|.||+..+.+..+....|. +.|.+++...+|.. ++|+.|..|..|| ..-+.++..+.......+..++=..
T Consensus 265 S~G~i~Iw~~~~~~~~k~~~aH~---ggv~~L~~lr~Gtl-lSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~ 339 (626)
T KOG2106|consen 265 SGGNILIWSKGTNRISKQVHAHD---GGVFSLCMLRDGTL-LSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGK 339 (626)
T ss_pred CCceEEEEeCCCceEEeEeeecC---CceEEEEEecCccE-eecCccceEEecc-ccccccccccCchhcCCeeEEecCC
Confidence 47789999998887777776666 99999999998865 5599999999999 5555566555554444566555332
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCcccee
Q 001386 633 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1088)
Q Consensus 633 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v 712 (1088)
.+ |++|+..+.|..=.+.++-.
T Consensus 340 ~d--i~vGTtrN~iL~Gt~~~~f~-------------------------------------------------------- 361 (626)
T KOG2106|consen 340 GD--ILVGTTRNFILQGTLENGFT-------------------------------------------------------- 361 (626)
T ss_pred Cc--EEEeeccceEEEeeecCCce--------------------------------------------------------
Confidence 22 66666655544333322211
Q ss_pred ccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeecc
Q 001386 713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDT 792 (1088)
Q Consensus 713 w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1088)
+...+|......++..|+...+++++.|+.+++|+ ..+. .|. ..
T Consensus 362 ---------------~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~---------~wt---------~~- 405 (626)
T KOG2106|consen 362 ---------------LTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKL---------EWT---------KI- 405 (626)
T ss_pred ---------------EEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCce---------eEE---------EE-
Confidence 01123666778888999999999999999999997 1111 121 11
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC
Q 001386 793 TDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 871 (1088)
Q Consensus 793 ~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~ 871 (1088)
...++.|+.|.|.| .+|.|. .|...+.|.++...+..-.. ..++++++|+| +|.+||+|+.|+.|+||-+..
T Consensus 406 ----~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 406 ----IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred ----ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-CCCEEEEecCCCeEEEEEECC
Confidence 45688899999999 888887 89999999999666555544 88999999999 899999999999999999865
Q ss_pred c-eeeeeecc-ccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeee---------ee---eecCCCCccCCCCeEE
Q 001386 872 S-EVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC---------RS---LQTPDGVMTLAPSETH 937 (1088)
Q Consensus 872 ~-~~~~~l~~-h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~---------~~---~~~~~~~~~~~~~v~~ 937 (1088)
. ........ |..+|+.+.||+|+++|.+-+.|-.|-.|.-..-+.... .+ +....+ .....|..
T Consensus 479 ~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~--s~~t~i~a 556 (626)
T KOG2106|consen 479 NGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGG--SDGTDINA 556 (626)
T ss_pred CCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecc--cCCchHHH
Confidence 4 33333322 447999999999999999999999999994332111110 00 011111 11134666
Q ss_pred EEEcCCCCEEEEEeC-CeEEEEEcCcc--eeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 001386 938 IQFHKDQTRFLLVHE-THLAIYEAEEL--TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1003 (1088)
Q Consensus 938 ~~fs~dg~~l~~~~d-~~i~vwd~~~~--~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~ 1003 (1088)
++-+.+.+.+|++.| |+|++|...-- +.....+.+|++.|++++|+.+...+++.+.|..|..|++
T Consensus 557 ~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 557 VARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred hhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 777788889999755 79999986533 2333346789999999999999999998889999999986
No 33
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.7e-34 Score=281.26 Aligned_cols=339 Identities=18% Similarity=0.233 Sum_probs=287.9
Q ss_pred EeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEE
Q 001386 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515 (1088)
Q Consensus 436 ~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 515 (1088)
.|..|+..|.+++.+|+.+ +++||+.|....+|++.+|..+..+.+|...|+++.| +.+|.+|++|+.+|.|++|+
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~F--shdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSF--SHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEE--ccCceEEEecCCCccEEEEE
Confidence 6889999999999999777 8999999999999999999999999999999999999 55889999999999999999
Q ss_pred CCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEE
Q 001386 516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 595 (1088)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 595 (1088)
..++.....+......+.-+.|+|.+..|++|+. ++.+.+|.+.++...+.+.||. .++++=.|.|+|+.+++
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~---~~ct~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHN---SPCTCGEFIPDGKRILT 207 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCC---CCcccccccCCCceEEE
Confidence 9999999998888888999999999999999976 5559999999988899999988 89999999999999999
Q ss_pred EeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCC
Q 001386 596 AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI 675 (1088)
Q Consensus 596 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~ 675 (1088)
+..||+|++||..+++++..+....+ ....++.++.++..++.|+.++.+.+.+..+++.+....+
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~------------- 273 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG------------- 273 (399)
T ss_pred EecCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccceEEEecCC-------------
Confidence 99999999999999999999876553 3468899999999999999999888877665543211110
Q ss_pred CcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccc
Q 001386 676 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 755 (1088)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d 755 (1088)
.+..+-. +.
T Consensus 274 ---------------------------------------------------------------------~~~~l~~-~~- 282 (399)
T KOG0296|consen 274 ---------------------------------------------------------------------TVPELKP-SQ- 282 (399)
T ss_pred ---------------------------------------------------------------------CCccccc-cc-
Confidence 0000000 00
Q ss_pred cceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEE
Q 001386 756 GVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILT 834 (1088)
Q Consensus 756 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~ 834 (1088)
......|..+.++..-.+.|+|+ ||+|.|||+.+.+....
T Consensus 283 ---------------------------------------e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~ 323 (399)
T KOG0296|consen 283 ---------------------------------------EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI 323 (399)
T ss_pred ---------------------------------------hhhhhhhhhcccccccchhhcccccceEEEEecccchhhee
Confidence 00122344445555666788888 99999999998776655
Q ss_pred ecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcC
Q 001386 835 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 912 (1088)
Q Consensus 835 ~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~ 912 (1088)
.. |...|+.+.|-+ ..+|++++.+|.|+.||.++|+++..+.||...|.+++++|++++++|+|.|++.+|+++.
T Consensus 324 c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 324 CE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 55 888899999987 4689999999999999999999999999999999999999999999999999999999874
No 34
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.2e-35 Score=285.91 Aligned_cols=301 Identities=18% Similarity=0.249 Sum_probs=270.0
Q ss_pred ccCCCchhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCC
Q 001386 318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1088)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~ 397 (1088)
..+..|-.+.+.+.+|.+.|.|+++.|-.+ ++++|+.|++|+|||+.+|++..+ +.||-.
T Consensus 135 PeWHapwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~ 194 (460)
T KOG0285|consen 135 PEWHAPWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIE 194 (460)
T ss_pred ccccCcceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhh
Confidence 335556678899999999999999999887 799999999999999999998876 889999
Q ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce
Q 001386 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1088)
Q Consensus 398 ~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~ 477 (1088)
.|..+++|+--.||.+++.|+.|+.||++..+.++ .+.||-..|.|++..|.-. .|++|+.|.+++|||+++...
T Consensus 195 ~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~ 269 (460)
T KOG0285|consen 195 TVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRAS 269 (460)
T ss_pred eeeeeeecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccce
Confidence 99999999999999999999999999999998877 6889999999999999988 899999999999999999999
Q ss_pred eEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeE
Q 001386 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1088)
Q Consensus 478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i 557 (1088)
+..+.||..+|.++.+.+. ...+++|+.|++|++||+..++....+..|...+.+++.+|....+++++.+ .|
T Consensus 270 V~~l~GH~~~V~~V~~~~~--dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-----ni 342 (460)
T KOG0285|consen 270 VHVLSGHTNPVASVMCQPT--DPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-----NI 342 (460)
T ss_pred EEEecCCCCcceeEEeecC--CCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-----cc
Confidence 9999999999999988543 3579999999999999999999999999999999999999999999998753 39
Q ss_pred EEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEe---CCC---CCCCCceEEEe
Q 001386 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID---AGG---GLPENPRICFN 631 (1088)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~---~~~---~~~~v~~v~~s 631 (1088)
..|++..|..++.+.+|. ..+++++.+.|+ ++++|+++|.+.+||.++|-..+... ..+ ....|.+.+|.
T Consensus 343 k~w~~p~g~f~~nlsgh~---~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fD 418 (460)
T KOG0285|consen 343 KQWKLPEGEFLQNLSGHN---AIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFD 418 (460)
T ss_pred eeccCCccchhhcccccc---ceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeec
Confidence 999999999999999888 899999998874 88999999999999999886655442 111 12357889999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCC
Q 001386 632 KNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 632 ~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
..|..|++|..|.+|++|.-...
T Consensus 419 ktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 419 KTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred ccCceEEeccCCcceEEEecccc
Confidence 99999999999999999986643
No 35
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.8e-34 Score=265.09 Aligned_cols=295 Identities=16% Similarity=0.249 Sum_probs=253.0
Q ss_pred eEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCc--eeEEEeccccc
Q 001386 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQ 577 (1088)
Q Consensus 500 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~ 577 (1088)
-+|++++.|.+||+|...++.+..++......|..+...|+++.|++++ ...|++||++++. ++.++.+|.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~-- 83 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHT-- 83 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccC--
Confidence 4799999999999999999999999999999999999999999999987 4569999999765 588899998
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcc
Q 001386 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 657 (1088)
Q Consensus 578 ~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 657 (1088)
..|.++.|..+|+++++|++||+++|||++...+.+.+... .+|+++..+|+..-|+++..+|.|++||+.+....
T Consensus 84 -kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 84 -KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT 159 (311)
T ss_pred -CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeecCCCcEEEEEccCCccc
Confidence 89999999999999999999999999999996666666543 46999999999999999999999999999866332
Q ss_pred cccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccE
Q 001386 658 DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKI 737 (1088)
Q Consensus 658 ~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i 737 (1088)
..+- |+ ....|
T Consensus 160 ~~li-------------------------------------------------------------------Pe--~~~~i 170 (311)
T KOG0315|consen 160 HELI-------------------------------------------------------------------PE--DDTSI 170 (311)
T ss_pred cccC-------------------------------------------------------------------CC--CCcce
Confidence 2111 11 23568
Q ss_pred EEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe
Q 001386 738 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS 817 (1088)
Q Consensus 738 ~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 817 (1088)
.+++..|||.+++++...|..++|++...... + .+....+.+.|...+....+|||+++||+++
T Consensus 171 ~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~-------------s---~l~P~~k~~ah~~~il~C~lSPd~k~lat~s 234 (311)
T KOG0315|consen 171 QSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA-------------S---ELEPVHKFQAHNGHILRCLLSPDVKYLATCS 234 (311)
T ss_pred eeEEEcCCCcEEEEecCCccEEEEEccCCCcc-------------c---cceEhhheecccceEEEEEECCCCcEEEeec
Confidence 89999999999999999999999998763220 0 1111112235899999999999999999998
Q ss_pred -CCcEEEEEcCCc-eeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEEC
Q 001386 818 -GGVISLYIVMTF-KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 891 (1088)
Q Consensus 818 -dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s 891 (1088)
|.+++||+.++. +.-..+.+|...+..++||. |++||++|+.|+.+++|+++.++.+....+|-....|++..
T Consensus 235 sdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 235 SDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred CCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 899999999987 66677889999999999999 89999999999999999999999999999998888887764
No 36
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.1e-34 Score=280.80 Aligned_cols=335 Identities=15% Similarity=0.190 Sum_probs=287.8
Q ss_pred hhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1088)
...+.++..|+++|.+++.+|+.+ ++|||+.|....||+..+|+.... +.+|...|+++.
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~e-------------------ltgHKDSVt~~~ 113 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGE-------------------LTGHKDSVTCCS 113 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeE-------------------ecCCCCceEEEE
Confidence 345678899999999999999777 899999999999999999997765 889999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEecc
Q 001386 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1088)
Q Consensus 404 ~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~ 483 (1088)
||.||.+||+|..+|.|+||+..++.... .+..-...+.-+.|+|-+. +|+.|+.||.+-+|.+.++...+.+.|
T Consensus 114 FshdgtlLATGdmsG~v~v~~~stg~~~~---~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~G 188 (399)
T KOG0296|consen 114 FSHDGTLLATGDMSGKVLVFKVSTGGEQW---KLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSG 188 (399)
T ss_pred EccCceEEEecCCCccEEEEEcccCceEE---EeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecC
Confidence 99999999999999999999999987655 4445566788999999888 899999999999999999888899999
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCC-CCceEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 562 (1088)
|..++++=.|. ++|+.++++..||+|++|+..+.+....+... +....++.++.++..++.|.. ++.+++.+.
T Consensus 189 h~~~ct~G~f~--pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~----e~~~~~~~~ 262 (399)
T KOG0296|consen 189 HNSPCTCGEFI--PDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS----EGVACGVNN 262 (399)
T ss_pred CCCCccccccc--CCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC----CccEEEEcc
Confidence 99999999985 46899999999999999999999988876643 446778899999999988865 555888888
Q ss_pred CCCceeEEEec--------cccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCC
Q 001386 563 SEGAIKRTYQG--------LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1088)
Q Consensus 563 ~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1088)
.+|+.+....+ +......|..+.++..-+..++|+-||+|.|||+...++........ .|..+.|-+ .
T Consensus 263 ~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~---~V~~l~w~~-t 338 (399)
T KOG0296|consen 263 GSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHED---GVTKLKWLN-T 338 (399)
T ss_pred ccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCC---ceEEEEEcC-c
Confidence 88888777663 22112334445555566788999999999999999887777765543 489999998 7
Q ss_pred CEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceecc
Q 001386 635 TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 714 (1088)
Q Consensus 635 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~ 714 (1088)
.+|++++.+|.|+.||.++|+......+|...|.+++++ |+++++++++.|++.+|++
T Consensus 339 ~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls----------------------~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 339 DYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALS----------------------PQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred chheeeccCceEEeeeccccceEEEEecCchheeEEEEc----------------------CCCcEEEEecCCCeEEEEe
Confidence 899999999999999999999999999999999999998 6788899999999999887
Q ss_pred c
Q 001386 715 P 715 (1088)
Q Consensus 715 ~ 715 (1088)
.
T Consensus 397 v 397 (399)
T KOG0296|consen 397 V 397 (399)
T ss_pred c
Confidence 4
No 37
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.1e-31 Score=273.09 Aligned_cols=523 Identities=14% Similarity=0.187 Sum_probs=375.5
Q ss_pred EEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCC--------cEEEEeCC
Q 001386 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--------TIKVWDAV 473 (1088)
Q Consensus 402 l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~--------~i~vwd~~ 473 (1088)
+-+-|.|..+.... ..+.+++++...+ +.+.+|...|.|++.+||.- .+++|-.-| .+++||..
T Consensus 71 ly~lptgE~vyfvA--~V~Vl~n~ee~~Q----r~y~GH~ddikc~~vHPdri--~vatGQ~ag~~g~~~~phvriWdsv 142 (626)
T KOG2106|consen 71 LYLLPTGELVYFVA--AVGVLYNWEERSQ----RHYLGHNDDIKCMAVHPDRI--RVATGQGAGTSGRPLQPHVRIWDSV 142 (626)
T ss_pred eEEccCccEEEEec--cEEEEEeehhhhc----ccccCCCCceEEEeecCCce--eeccCcccccCCCcCCCeeeecccc
Confidence 55677777665542 3456677765321 14679999999999999876 566554433 59999988
Q ss_pred CCceeEEeccCCccEEEEeeeeeCCceEEEEE--ecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCC
Q 001386 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI--SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
+-..++.+......|++++|++...|.++... +.+..+.+||+..+.........+..+....|.|.+..++...
T Consensus 143 ~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~--- 219 (626)
T KOG2106|consen 143 TLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITC--- 219 (626)
T ss_pred cceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEe---
Confidence 88888888888889999999988877776665 3455689999998877777777777888999999766555443
Q ss_pred CCceeEEEEeCCCCceeEE---EeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceE
Q 001386 552 EGESFLVEWNESEGAIKRT---YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1088)
|.+.++.|+.+.+...++ +..+. +..|.|++|.++|. +++|..+|.|.||+..+.+..+....|. ..|.++
T Consensus 220 -Gk~H~~Fw~~~~~~l~k~~~~fek~e--kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~--ggv~~L 293 (626)
T KOG2106|consen 220 -GKGHLYFWTLRGGSLVKRQGIFEKRE--KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHD--GGVFSL 293 (626)
T ss_pred -CCceEEEEEccCCceEEEeecccccc--ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecC--CceEEE
Confidence 267799999998876655 44444 46799999999875 7899999999999998877777766554 469999
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCc
Q 001386 629 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708 (1088)
Q Consensus 629 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 708 (1088)
+.-.+|.+|- |+.|+.|..||-. -+.++...
T Consensus 294 ~~lr~GtllS-GgKDRki~~Wd~~-y~k~r~~e----------------------------------------------- 324 (626)
T KOG2106|consen 294 CMLRDGTLLS-GGKDRKIILWDDN-YRKLRETE----------------------------------------------- 324 (626)
T ss_pred EEecCccEee-cCccceEEecccc-cccccccc-----------------------------------------------
Confidence 9999997666 9999999999922 22221111
Q ss_pred cceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcce
Q 001386 709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFM 788 (1088)
Q Consensus 709 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1088)
+|+ ..+.|+.++-...+ ++.+...+.|..=.++ .+..+.
T Consensus 325 -------------------lPe--~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~------------------~~f~~~ 363 (626)
T KOG2106|consen 325 -------------------LPE--QFGPIRTVAEGKGD--ILVGTTRNFILQGTLE------------------NGFTLT 363 (626)
T ss_pred -------------------Cch--hcCCeeEEecCCCc--EEEeeccceEEEeeec------------------CCceEE
Confidence 011 11222222221111 4444443333221111 111111
Q ss_pred eeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 001386 789 VNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 867 (1088)
Q Consensus 789 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lw 867 (1088)
..+|......++..|+...+++++ |+.+++|+ ..+...+.. ...++.|+.|+| .| .+|.|+..|...|.
T Consensus 364 -----v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~ 433 (626)
T KOG2106|consen 364 -----VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHP-SG-VVAVGTATGRWFVL 433 (626)
T ss_pred -----EEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccC-cc-eEEEeeccceEEEE
Confidence 124778889999999998888887 99999999 445444443 456889999999 67 99999999999999
Q ss_pred EcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEE
Q 001386 868 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 947 (1088)
Q Consensus 868 d~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l 947 (1088)
|.++...+..-.. ..+++++.|+|+|.+||.|+.|+.|+||.++.....-.+ +....+ .+|+++.||+|++++
T Consensus 434 d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r-~~k~~g-----s~ithLDwS~Ds~~~ 506 (626)
T KOG2106|consen 434 DTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSR-VGKCSG-----SPITHLDWSSDSQFL 506 (626)
T ss_pred ecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEE-eeeecC-----ceeEEeeecCCCceE
Confidence 9999766665554 889999999999999999999999999999876533322 222233 369999999999999
Q ss_pred EE-EeCCeEEEEEcCcceeeee-----------------eecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceE
Q 001386 948 LL-VHETHLAIYEAEELTCLKQ-----------------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1009 (1088)
Q Consensus 948 ~~-~~d~~i~vwd~~~~~~~~~-----------------~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~ 1009 (1088)
.+ +.|-.|..|....-+.+.. +...|+..|..++-|.+.+++++|...|+|++|..+--...
T Consensus 507 ~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~r 586 (626)
T KOG2106|consen 507 VSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPR 586 (626)
T ss_pred EeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCc
Confidence 99 7788899994433222211 12235677788888899999999999999999998765544
Q ss_pred EEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeC
Q 001386 1010 CRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1056 (1088)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l 1056 (1088)
+.+. .+.. +.....+++|.-. ...|++.+.|.+|..|++
T Consensus 587 A~~h--e~~g-----hs~~vt~V~Fl~~-d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 587 APSH--EYGG-----HSSHVTNVAFLCK-DSHLISTGKDTSIMQWRL 625 (626)
T ss_pred ccce--eecc-----ccceeEEEEEeeC-CceEEecCCCceEEEEEe
Confidence 3322 2222 2233467888874 467777779999999987
No 38
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.7e-34 Score=271.72 Aligned_cols=290 Identities=19% Similarity=0.245 Sum_probs=252.6
Q ss_pred eecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
..|.||+++|..+.|+|+|. ++|+|+.|..|.+|++.....-. ..+++|.++|..+.|.+|
T Consensus 41 m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~d 101 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMRD 101 (338)
T ss_pred hhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeeccC
Confidence 45789999999999999998 79999999999999975433211 127799999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCcc
Q 001386 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1088)
Q Consensus 408 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1088)
+..|++++.|.+|+.||+++|++.+ .+++|...|+.+.-+.-|.. ++.+++.|+++++||+++..+++++. ....
T Consensus 102 ~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyq 176 (338)
T KOG0265|consen 102 GSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQ 176 (338)
T ss_pred CCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-ccee
Confidence 9999999999999999999998777 68899999999996666665 78999999999999999999988876 5667
Q ss_pred EEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC---
Q 001386 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--- 564 (1088)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~--- 564 (1088)
++++.| ...+..+++|+-|+.|++||++.......+.+|...|+.+..+++|.++.+-+. +.++++||.+.
T Consensus 177 ltAv~f--~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p 250 (338)
T KOG0265|consen 177 LTAVGF--KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAP 250 (338)
T ss_pred EEEEEe--cccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCC
Confidence 888888 456678999999999999999999999999999999999999999999998875 66799999874
Q ss_pred -CceeEEEecccc-ccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC
Q 001386 565 -GAIKRTYQGLQL-QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1088)
Q Consensus 565 -~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1088)
.+++..+.++.. .......++|+|++..+-+|+.|..+++||......+..+++|.+ .|++++|+|...++.+++.
T Consensus 251 ~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g--svn~~~Fhp~e~iils~~s 328 (338)
T KOG0265|consen 251 SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG--SVNEVDFHPTEPIILSCSS 328 (338)
T ss_pred CCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce--eEEEeeecCCCcEEEEecc
Confidence 345778887751 113456778999999999999999999999999899999987755 6999999999999999999
Q ss_pred CCcEEEE
Q 001386 643 ENRIKIL 649 (1088)
Q Consensus 643 dg~i~iw 649 (1088)
|.+|++=
T Consensus 329 dk~i~lg 335 (338)
T KOG0265|consen 329 DKTIYLG 335 (338)
T ss_pred CceeEee
Confidence 9999874
No 39
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.9e-33 Score=263.02 Aligned_cols=292 Identities=22% Similarity=0.336 Sum_probs=239.8
Q ss_pred heeecccCCCCceeeeecCC-CCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 326 VAQTLIEGSSSPMSMDFHPV-QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spd-g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
..+++++|++.|+.++|+|- |. +||+++.|..|+||+...+..... ...+-.+|+..|+++||
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAW 69 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeee
Confidence 45788999999999999998 76 899999999999999986432211 11123579999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC---ceeEEe
Q 001386 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSF 481 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~---~~~~~~ 481 (1088)
+|.|++||+++.|.++.||.-..++ +.....+.||...|.+++|+++|. +|++++.|+.|-||.+..+ +++..+
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL 146 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVL 146 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence 9999999999999999999887654 455668999999999999999999 8999999999999998754 467889
Q ss_pred ccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCC---CceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEE
Q 001386 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1088)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~ 558 (1088)
..|...|..+.|+|..+ +|++++.|.+|++|+-... .+..++.++...|.+++|++.|..|++++. ++++.
T Consensus 147 ~~HtqDVK~V~WHPt~d--lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~ 220 (312)
T KOG0645|consen 147 QEHTQDVKHVIWHPTED--LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVS 220 (312)
T ss_pred ccccccccEEEEcCCcc--eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceE
Confidence 99999999999998765 9999999999999987632 357788899999999999999999999975 66799
Q ss_pred EEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe------eeEEEeCCCCCCCCceEEEec
Q 001386 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ------LLTTIDAGGGLPENPRICFNK 632 (1088)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~s~ 632 (1088)
||-..+. +.+ .|...+..+.|. ...|++++.|+.|++|.-...- .+... .+.+...|+++.|+|
T Consensus 221 Iw~~~~~-----~~~--~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p 290 (312)
T KOG0645|consen 221 IWRLYTD-----LSG--MHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNP 290 (312)
T ss_pred eeeeccC-----cch--hcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcC
Confidence 9985522 222 124788989998 5689999999999999766421 11111 122334799999999
Q ss_pred C-CCEEEEEeCCCcEEEEeCC
Q 001386 633 N-GTLLAVIANENRIKILETP 652 (1088)
Q Consensus 633 ~-~~~l~~~~~dg~i~iwd~~ 652 (1088)
. .++|+++++||.+++|.+.
T Consensus 291 ~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 291 KVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCCceeecCCCceEEEEEec
Confidence 4 7899999999999999864
No 40
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.3e-32 Score=293.37 Aligned_cols=499 Identities=17% Similarity=0.198 Sum_probs=354.7
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+...+..|..++|+|..-+++++-..|.|++||..-+.++. .+..|.++|..++|+|++. +++||+.|..|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 34466789999999999999999999999999999988776 6889999999999999999 899999999999999
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCC
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
..+.+|+.++.||-..|..+.|++.- .+++++|.|.+|+||++.+++++..+.+|.+-|.|..|+|....+++++-
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 99999999999999999999997643 69999999999999999999999999999999999999999999999987
Q ss_pred CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEE---EEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceE
Q 001386 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI---LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1088)
+.+|++||+..-+....-.+ ++.=...+... +.|+.|- -....+.+| ...|+-+
T Consensus 156 --DQTVRVWDisGLRkk~~~pg---------~~e~~~~~~~~~~dLfg~~Da----------VVK~VLEGH--DRGVNwa 212 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPG---------SLEDQMRGQQGNSDLFGQTDA----------VVKHVLEGH--DRGVNWA 212 (1202)
T ss_pred --cceEEEEeecchhccCCCCC---------CchhhhhccccchhhcCCcCe----------eeeeeeccc--ccccceE
Confidence 55699999875433222111 00000111111 1122222 222345555 4469999
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCC--cccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCccccccc
Q 001386 629 CFNKNGTLLAVIANENRIKILETPESN--SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 706 (1088)
Q Consensus 629 ~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 706 (1088)
+|+|.-.++++|++|+.|++|.+...+ .+.+.++|.+.|.++-|+ |....+++.+.
T Consensus 213 AfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfh----------------------p~q~lIlSnsE 270 (1202)
T KOG0292|consen 213 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFH----------------------PHQDLILSNSE 270 (1202)
T ss_pred EecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEec----------------------CccceeEecCC
Confidence 999999999999999999999998764 466789999999999998 56788999999
Q ss_pred CccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCc
Q 001386 707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQ 786 (1088)
Q Consensus 707 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1088)
|+++++||+......++... ...+...++..|..+ +++++.|+-+.+|.++...
T Consensus 271 DksirVwDm~kRt~v~tfrr------endRFW~laahP~lN-LfAAgHDsGm~VFkleREr------------------- 324 (1202)
T KOG0292|consen 271 DKSIRVWDMTKRTSVQTFRR------ENDRFWILAAHPELN-LFAAGHDSGMIVFKLERER------------------- 324 (1202)
T ss_pred CccEEEEecccccceeeeec------cCCeEEEEEecCCcc-eeeeecCCceEEEEEcccC-------------------
Confidence 99999999987665554432 456788999999998 4555566666677654322
Q ss_pred ceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeE--EEecCC---CCCeEEEEEcCCCCcEEEEEeCC
Q 001386 787 FMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI--LTIMPP---SPTATSLAFNPHDNNVIAIGMDD 861 (1088)
Q Consensus 787 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~--~~~~~~---~~~i~~l~~sp~d~~~lasg~~d 861 (1088)
+ +.++ ++..|....+..|+-+|+.+.+.. ..++.. ..+..++.++|..+..+++...|
T Consensus 325 -------------p--a~~v--~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~ 387 (1202)
T KOG0292|consen 325 -------------P--AYAV--NGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLD 387 (1202)
T ss_pred -------------c--eEEE--cCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccC
Confidence 1 2333 344555556889999999875433 334433 36788999999555555554433
Q ss_pred -CeEEEEEcCCceee-eeec-cccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEE
Q 001386 862 -STILIYNARSSEVI-SKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 938 (1088)
Q Consensus 862 -g~i~lwd~~~~~~~-~~l~-~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 938 (1088)
|...++.+...... ...+ .-.++-....|-...++.+---.+..+.+-++.+.. .+.++.+. .+..+
T Consensus 388 n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~v---tkkl~~~~-------~~~~I 457 (1202)
T KOG0292|consen 388 NGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKV---TKKLLLPE-------STDDI 457 (1202)
T ss_pred CCeEEEEEecCcccccCCchhhhcCCCCceEEEEecceEEEEecCcceEEecccchh---hhcccCcc-------cccce
Confidence 45556655432110 0000 011111112222222333333335556666665532 12222221 24456
Q ss_pred EEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEE
Q 001386 939 QFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1002 (1088)
Q Consensus 939 ~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd 1002 (1088)
.+...|.+|+. +...|.+||++.++.+.++. ...|..++||+|..+++.-+ ..+|.+.+
T Consensus 458 F~ag~g~lll~-~~~~v~lfdvQq~~~~~si~---~s~vkyvvws~dm~~vAll~-Kh~i~i~~ 516 (1202)
T KOG0292|consen 458 FYAGTGNLLLR-SPDSVTLFDVQQKKKVGSIK---VSKVKYVVWSNDMSRVALLS-KHTITIAD 516 (1202)
T ss_pred eeccCccEEEE-cCCeEEEEEeecceEEEEEe---cCceeEEEEcCccchhhhcc-cceEEEEe
Confidence 66667766655 45679999999998888765 56889999999988776554 33455554
No 41
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.8e-30 Score=273.18 Aligned_cols=550 Identities=12% Similarity=0.117 Sum_probs=391.2
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccC-CCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001386 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1088)
Q Consensus 396 ~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~ 474 (1088)
...|.++|||.+++.||.+-.+|.|.+|++..+=.... .+.++ ...|.+++|++.++ |.+.+.+|.|.-||+.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCCe---EEeecCCceEEEEeccc
Confidence 47899999999999999999999999999998644333 45555 45799999997665 89999999999999999
Q ss_pred CceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceE--EecCCCCceEEEEEccCCCEEEEEeeCCC
Q 001386 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1088)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~~~~~~~~ 552 (1088)
++.+..+....+.|++++.++.. ..++.|+.||.+..++........ .+....+.+.+++|+|++..++.|+.
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~--- 174 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI--- 174 (691)
T ss_pred CceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc---
Confidence 99999999999999999997654 589999999988888777666544 34445678999999999999999976
Q ss_pred CceeEEEEeCCCCceeEEEeccc-----cccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCce
Q 001386 553 GESFLVEWNESEGAIKRTYQGLQ-----LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1088)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1088)
++.|++||..++..+....... ....-|.++.|-.+ ..+++|...|+|.+||...|.+++.+..+.. .|.+
T Consensus 175 -Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl~ 250 (691)
T KOG2048|consen 175 -DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVLA 250 (691)
T ss_pred -CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhc--ceeE
Confidence 6679999999998777332111 11235777777755 5789999999999999999999999887754 6999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccC
Q 001386 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1088)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 707 (1088)
++..+++.++++++.|+.|.-+...++..-
T Consensus 251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-------------------------------------------------- 280 (691)
T KOG2048|consen 251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSE-------------------------------------------------- 280 (691)
T ss_pred EEEcCCCCeEEEccCCCceEEEEecCCccc--------------------------------------------------
Confidence 999999999999999999988877654220
Q ss_pred ccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcc
Q 001386 708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQF 787 (1088)
Q Consensus 708 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1088)
|- ...+...|...+.+++..++ .+++++.|..+.+-.....+. .+- .
T Consensus 281 -----wv-----------~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~----------~~h-----~ 327 (691)
T KOG2048|consen 281 -----WV-----------INSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKN----------MDH-----R 327 (691)
T ss_pred -----ee-----------eeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCc----------hhh-----h
Confidence 10 00111237778888888877 788888898887643322110 000 0
Q ss_pred eeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCcee---------EEEecCCCCCeEEEEEcCCCCcEEEEE
Q 001386 788 MVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---------ILTIMPPSPTATSLAFNPHDNNVIAIG 858 (1088)
Q Consensus 788 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~---------~~~~~~~~~~i~~l~~sp~d~~~lasg 858 (1088)
+.... .. -.-+...|..++++......+.+|.+.+... .+-.......|.+.+.|| +|++++.+
T Consensus 328 ~~~~~----p~--~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~Ia~s 400 (691)
T KOG2048|consen 328 QKNLF----PA--SDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNLIAIS 400 (691)
T ss_pred ccccc----cc--cceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCEEEEe
Confidence 00000 01 1124455666666666788889998866521 122233456799999999 89999987
Q ss_pred eCCCeEEEEEcCCceee-----eeeccccCCeeEEEECCCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeecCCCCccCC
Q 001386 859 MDDSTILIYNARSSEVI-----SKLEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 932 (1088)
Q Consensus 859 ~~dg~i~lwd~~~~~~~-----~~l~~h~~~V~~l~~s~dg~~las~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 932 (1088)
.- ..++||.+..-..+ .....-.-....+.|+-|+..++.++ .+..+.+.+++++.......++.. +..
T Consensus 401 t~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~-~~~--- 475 (691)
T KOG2048|consen 401 TV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ-AKC--- 475 (691)
T ss_pred ec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc-cCC---
Confidence 63 45888887652221 12222334577889999999988888 778888888887654433333322 111
Q ss_pred CCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEee-CCCEEEEEeCCCcEEEEEcCCCceEE
Q 001386 933 PSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNLEVQC 1010 (1088)
Q Consensus 933 ~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~s~s~dg~v~vwd~~~~~~~~ 1010 (1088)
..|..++.||||++||+ +..+.|.+|++++++.-.... .-...|+.++|+| +-..|+.+..++.|.-||+....+ .
T Consensus 476 ~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~-rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l-~ 553 (691)
T KOG2048|consen 476 PSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV-RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNL-T 553 (691)
T ss_pred CcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh-ccCcceeeeeccccccCcEEEEecCCeEEEEecchhhh-h
Confidence 36999999999999999 788999999999887654432 2248899999995 556788899999999999955442 2
Q ss_pred Eeccc--cccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001386 1011 RILST--AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1057 (1088)
Q Consensus 1011 ~~~~~--~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~ 1057 (1088)
++... ..++..+....-....+.|+|.+.. .+...+.+-+++.|+.
T Consensus 554 ~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s-~~~~~~a~w~~~id~~ 601 (691)
T KOG2048|consen 554 RWSKNNTRNLPKEPKTLIPGIPGISFDPKNSS-RFIVYDAHWSCLIDFS 601 (691)
T ss_pred hhhhccccccccChhhcCCCCceEEeCCCCcc-EEEEEcCcEEEEEecC
Confidence 22211 1222221122122355778874444 3334455666666663
No 42
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.4e-33 Score=284.93 Aligned_cols=279 Identities=20% Similarity=0.310 Sum_probs=252.1
Q ss_pred CCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~ 414 (1088)
..|++++|+.+|. +||+|+.||.++||+... .++.+ +..|.++|.++.|+.+|.||+++
T Consensus 236 kdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G-~l~~t-------------------l~~HkgPI~slKWnk~G~yilS~ 294 (524)
T KOG0273|consen 236 KDVTSLDWNNDGT-LLATGSEDGEARIWNKDG-NLIST-------------------LGQHKGPIFSLKWNKKGTYILSG 294 (524)
T ss_pred CCcceEEecCCCC-eEEEeecCcEEEEEecCc-hhhhh-------------------hhccCCceEEEEEcCCCCEEEec
Confidence 4899999999999 899999999999999754 44433 66799999999999999999999
Q ss_pred eCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeee
Q 001386 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1088)
Q Consensus 415 ~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 494 (1088)
+.|+++.+||..+|.... .+.-|+.+-..+.|-.+.. +++++.|+.|+|+-+...+++.++.+|.++|.++.|.
T Consensus 295 ~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n 368 (524)
T KOG0273|consen 295 GVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN 368 (524)
T ss_pred cCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEEEC
Confidence 999999999999997655 4667888778899988776 8999999999999999999999999999999999994
Q ss_pred eeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCC---------EEEEEeeCCCCceeEEEEeCCCC
Q 001386 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR---------RLFSCGTSKEGESFLVEWNESEG 565 (1088)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~---------~l~~~~~~~~~~~~i~iwd~~~~ 565 (1088)
+.|.+|++++.|+++++|..........+..|...|+.+.|+|.|. .+++++. +.+|++||+..+
T Consensus 369 --~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~~g 442 (524)
T KOG0273|consen 369 --PTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVESG 442 (524)
T ss_pred --CCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEccCC
Confidence 4678999999999999999998888999999999999999999763 5777765 667999999999
Q ss_pred ceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCc
Q 001386 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1088)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 645 (1088)
.++..+..|. .+|.+++|+|+|.++++|+.||.|.+|+..+++.++.....+. |..++|+.+|..|..+..|+.
T Consensus 443 v~i~~f~kH~---~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~---Ifel~Wn~~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 443 VPIHTLMKHQ---EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGG---IFELCWNAAGDKLGACASDGS 516 (524)
T ss_pred ceeEeeccCC---CceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCe---EEEEEEcCCCCEEEEEecCCC
Confidence 9999999998 9999999999999999999999999999999999999876544 899999999999999999999
Q ss_pred EEEEeCC
Q 001386 646 IKILETP 652 (1088)
Q Consensus 646 i~iwd~~ 652 (1088)
+.+.|+.
T Consensus 517 vcvldlr 523 (524)
T KOG0273|consen 517 VCVLDLR 523 (524)
T ss_pred ceEEEec
Confidence 9998864
No 43
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-33 Score=257.81 Aligned_cols=293 Identities=15% Similarity=0.203 Sum_probs=253.5
Q ss_pred CCCchhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCe
Q 001386 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1088)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V 399 (1088)
..+|...+++|..|.+.|.++.|+-||+ +..+++.|.+|++|+...|.++++ ..+|...|
T Consensus 3 ~e~ptkr~~~l~~~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EV 62 (307)
T KOG0316|consen 3 LELPTKRLSILDCAQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEV 62 (307)
T ss_pred ccCcchhceeecccccceEEEEEccCCC-EEEEcCCCceEEeecccccceeee-------------------ecCCCcee
Confidence 3467777889999999999999999999 577778899999999999999987 88999999
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC--Cce
Q 001386 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT--GSR 477 (1088)
Q Consensus 400 ~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~--~~~ 477 (1088)
..++.+.|...+|+|+.|..+.+||+++|+..+ .+.+|.+.|+.++|+.+.. .+++|+.|.++++||.++ -++
T Consensus 63 lD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~eP 137 (307)
T KOG0316|consen 63 LDAALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEP 137 (307)
T ss_pred eeccccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCc
Confidence 999999999999999999999999999998777 7899999999999999999 999999999999999875 467
Q ss_pred eEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeE
Q 001386 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1088)
Q Consensus 478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i 557 (1088)
++.+......|.++.+ .+..|++|+.||+++.||++.++.... .-+.+|++++|++|++..++++. +..+
T Consensus 138 iQildea~D~V~Si~v----~~heIvaGS~DGtvRtydiR~G~l~sD--y~g~pit~vs~s~d~nc~La~~l----~stl 207 (307)
T KOG0316|consen 138 IQILDEAKDGVSSIDV----AEHEIVAGSVDGTVRTYDIRKGTLSSD--YFGHPITSVSFSKDGNCSLASSL----DSTL 207 (307)
T ss_pred cchhhhhcCceeEEEe----cccEEEeeccCCcEEEEEeecceeehh--hcCCcceeEEecCCCCEEEEeec----ccee
Confidence 8888888899999977 446899999999999999998765543 34568999999999999998876 5569
Q ss_pred EEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEE
Q 001386 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 637 (1088)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 637 (1088)
++.|-.+|++++.+.||......+ .++++.....+++|++||.|++||+.....+..+..+.. ..+.+++++|.-..+
T Consensus 208 rLlDk~tGklL~sYkGhkn~eykl-dc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f 285 (307)
T KOG0316|consen 208 RLLDKETGKLLKSYKGHKNMEYKL-DCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDF 285 (307)
T ss_pred eecccchhHHHHHhcccccceeee-eeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCccce
Confidence 999999999999999998333333 446777778999999999999999999999999887655 347899999977777
Q ss_pred EEEeCCCcEEEEe
Q 001386 638 AVIANENRIKILE 650 (1088)
Q Consensus 638 ~~~~~dg~i~iwd 650 (1088)
+++... .+..|.
T Consensus 286 ~~A~~~-~~~~~~ 297 (307)
T KOG0316|consen 286 ITATGH-GDLFWY 297 (307)
T ss_pred eEecCC-ceecee
Confidence 777654 445553
No 44
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.7e-33 Score=266.20 Aligned_cols=287 Identities=18% Similarity=0.301 Sum_probs=249.7
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEE
Q 001386 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vw 470 (1088)
.+.+|++.|..+.|+|+|.+||+|+.|..|.+|++.... .....+++|++.|+.+.|.+|+. .+++++.|++|+.|
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGW 117 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEEE
Confidence 488999999999999999999999999999999987543 34447889999999999999999 89999999999999
Q ss_pred eCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeC
Q 001386 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1088)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 550 (1088)
|+++|++++.+++|..-|+++... ..+-.++.+++.||++++||++.......+.. ...++++.|..++..+.+++-+
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggId 195 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGID 195 (338)
T ss_pred ecccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeecccc
Confidence 999999999999999999999843 23446788899999999999998777665533 3478899999999999999874
Q ss_pred CCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCC----CeeeEEEeCCCCCC--C
Q 001386 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK----VQLLTTIDAGGGLP--E 624 (1088)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~----~~~~~~~~~~~~~~--~ 624 (1088)
++ |.+||++......++.||. +.|+.+..+++|.++++-+.|.++++||++. .+++..+.++.+.. .
T Consensus 196 n~----ikvWd~r~~d~~~~lsGh~---DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfekn 268 (338)
T KOG0265|consen 196 ND----IKVWDLRKNDGLYTLSGHA---DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKN 268 (338)
T ss_pred Cc----eeeeccccCcceEEeeccc---CceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhh
Confidence 44 9999999999999999999 9999999999999999999999999999875 34467776654432 2
Q ss_pred CceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCccccc
Q 001386 625 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV 704 (1088)
Q Consensus 625 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 704 (1088)
...++|+|+++.+..|+.|+.+++||......+..+.+|...|.++.|+| ....+.++
T Consensus 269 lL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp----------------------~e~iils~ 326 (338)
T KOG0265|consen 269 LLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP----------------------TEPIILSC 326 (338)
T ss_pred cceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC----------------------CCcEEEEe
Confidence 45789999999999999999999999999999999999999999999985 45566777
Q ss_pred ccCcccee
Q 001386 705 EAENKSEV 712 (1088)
Q Consensus 705 ~~d~~i~v 712 (1088)
+.|++|.+
T Consensus 327 ~sdk~i~l 334 (338)
T KOG0265|consen 327 SSDKTIYL 334 (338)
T ss_pred ccCceeEe
Confidence 77777654
No 45
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.1e-32 Score=311.45 Aligned_cols=294 Identities=21% Similarity=0.350 Sum_probs=256.3
Q ss_pred eeecccC-CCCceeeeecCCCCeEEEEEcccCcEEEEecCCCc--ceeeeceeeeeeccccccceeeeecCCCCCeEEEE
Q 001386 327 AQTLIEG-SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1088)
Q Consensus 327 ~~~l~~h-~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1088)
.+++.+| ...|.++.|||||+ ++++++.|+.+++|+..+++ .+.. +.+|...|.+++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~-------------------l~~h~~~v~~~~ 210 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLRE-------------------LSGHTRGVSDVA 210 (456)
T ss_pred eeeecccccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhcc-------------------ccccccceeeeE
Confidence 5666555 77999999999999 59999999999999997776 3332 578999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEc-cCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEec
Q 001386 404 WSPDGSLLGVAYSKHIVQLYAY-HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1088)
Q Consensus 404 ~s~dg~~las~~~dg~i~vwd~-~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~ 482 (1088)
|+|||+++++++.|++|+|||+ ..+..++ ++.+|...|++++|+|+|+ ++++|+.|++|+|||+++++++..+.
T Consensus 211 fs~d~~~l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~ 285 (456)
T KOG0266|consen 211 FSPDGSYLLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLK 285 (456)
T ss_pred ECCCCcEEEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeee
Confidence 9999999999999999999999 4444444 7889999999999999997 89999999999999999999999999
Q ss_pred cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCC--ceEEecCCCC--ceEEEEEccCCCEEEEEeeCCCCceeEE
Q 001386 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGL--GCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1088)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~--~v~~~~~s~~g~~l~~~~~~~~~~~~i~ 558 (1088)
+|...|++++| ++++.+|++++.||.|++||+.++. ....+..+.. .++++.|+|++.++++++. ++.+.
T Consensus 286 ~hs~~is~~~f--~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~ 359 (456)
T KOG0266|consen 286 GHSDGISGLAF--SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLK 359 (456)
T ss_pred ccCCceEEEEE--CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEE
Confidence 99999999999 5678899999999999999999988 3455554444 5999999999999999986 55699
Q ss_pred EEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEE
Q 001386 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1088)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1088)
+||+..+.....+.+|......+.+...++.+.++++|+.|+.|++||..++..+..+..|. ...+..+.++|..++++
T Consensus 360 ~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~ 438 (456)
T KOG0266|consen 360 LWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIA 438 (456)
T ss_pred EEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeee
Confidence 99999999999999998322245555667899999999999999999999999999998875 45688999999999999
Q ss_pred EEe--CCCcEEEEeCC
Q 001386 639 VIA--NENRIKILETP 652 (1088)
Q Consensus 639 ~~~--~dg~i~iwd~~ 652 (1088)
+++ .|+.+++|...
T Consensus 439 s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 439 SSSFEGDGLIRLWKYD 454 (456)
T ss_pred ecCcCCCceEEEecCC
Confidence 998 68999999754
No 46
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-33 Score=274.11 Aligned_cols=285 Identities=20% Similarity=0.287 Sum_probs=263.8
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+.+|..+|+.+-|+|+-...++++.|++|++||..+|+..+ .++||...|..++|+..|+ ++++++.|-.+++||
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLWD 178 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhee
Confidence 77899999999999999999999999999999999999865 7899999999999999999 899999999999999
Q ss_pred CCC-CceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeC
Q 001386 472 AVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1088)
Q Consensus 472 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 550 (1088)
.++ -++++.+.+|...|.+++|.|.+ .++++++.|.+|+.|++.++.++.++.+|...|..+..+.||..+++++.
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~- 255 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN- 255 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC-
Confidence 887 67888999999999999997764 69999999999999999999999999999999999999999999999975
Q ss_pred CCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCC---------------CCEEEEEeCCCcEEEEEcCCCeeeEE
Q 001386 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---------------KDQILAAGDDHVIKIWDMNKVQLLTT 615 (1088)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~s~dg~i~iwd~~~~~~~~~ 615 (1088)
+.++++|-..++++...++.|. .+|.+++|.|. ++++.+++.|++|++||+.+|.++.+
T Consensus 256 ---dqtl~vW~~~t~~~k~~lR~hE---h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t 329 (406)
T KOG0295|consen 256 ---DQTLRVWVVATKQCKAELREHE---HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT 329 (406)
T ss_pred ---CceEEEEEeccchhhhhhhccc---cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE
Confidence 6679999999999999999988 89999998763 25889999999999999999999999
Q ss_pred EeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCC
Q 001386 616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 695 (1088)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 695 (1088)
+.+|.. .|..++|+|.|++|+++.+|+++++||+.+.++...+..|..-++++.|.
T Consensus 330 L~ghdn--wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh---------------------- 385 (406)
T KOG0295|consen 330 LVGHDN--WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFH---------------------- 385 (406)
T ss_pred Eecccc--eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecC----------------------
Confidence 998765 69999999999999999999999999999999999999999999999887
Q ss_pred CCCCcccccccCccceecc
Q 001386 696 EDVKPEISVEAENKSEVEK 714 (1088)
Q Consensus 696 ~~~~~l~~~~~d~~i~vw~ 714 (1088)
.+..++++|+-|.++++|.
T Consensus 386 ~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 386 KTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred CCCceEEeccccceeeeee
Confidence 3455889999999999996
No 47
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-29 Score=268.74 Aligned_cols=501 Identities=15% Similarity=0.182 Sum_probs=358.3
Q ss_pred CCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee-EEeccC-CccEEEEeeeeeCCceEEEEEecCCeEEEEECCC
Q 001386 441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGH-GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518 (1088)
Q Consensus 441 ~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~-~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 518 (1088)
...|.++||+.+++ .||.+-.||.|.+|++..+-.. ..+.++ ...|.+++|. ++..|++.+.+|.|.-||+.+
T Consensus 25 Ps~I~slA~s~kS~--~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~---e~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSN--QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA---EGGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCC--ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc---cCCeEEeecCCceEEEEeccc
Confidence 45799999999999 6899999999999999986544 455555 4679999996 445899999999999999999
Q ss_pred CCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeC
Q 001386 519 LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 598 (1088)
Q Consensus 519 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~ 598 (1088)
.+....+...++.|++++.+|.+..++.++. ++.++.++...++......-.. +.+.+.++.|+|++..+++|+.
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~~l~Igcd----dGvl~~~s~~p~~I~~~r~l~r-q~sRvLslsw~~~~~~i~~Gs~ 174 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENTILAIGCD----DGVLYDFSIGPDKITYKRSLMR-QKSRVLSLSWNPTGTKIAGGSI 174 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccceEEeecC----CceEEEEecCCceEEEEeeccc-ccceEEEEEecCCccEEEeccc
Confidence 9999999999999999999999999999875 4468888877776654433222 2478999999999999999999
Q ss_pred CCcEEEEEcCCCeeeEEEeC-----CC-CCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeee
Q 001386 599 DHVIKIWDMNKVQLLTTIDA-----GG-GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV 672 (1088)
Q Consensus 599 dg~i~iwd~~~~~~~~~~~~-----~~-~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 672 (1088)
||.|++||..++..+..... .. ...-|+++.|-.++ .+++|...|+|.+||...+..++....
T Consensus 175 Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~---------- 243 (691)
T KOG2048|consen 175 DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSC---------- 243 (691)
T ss_pred CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhh----------
Confidence 99999999999988773321 11 11235566666554 788999999999999998877665554
Q ss_pred cCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEe
Q 001386 673 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL 752 (1088)
Q Consensus 673 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 752 (1088)
|...|.+++..+++.+++++
T Consensus 244 ------------------------------------------------------------h~adVl~Lav~~~~d~vfsa 263 (691)
T KOG2048|consen 244 ------------------------------------------------------------HDADVLALAVADNEDRVFSA 263 (691)
T ss_pred ------------------------------------------------------------hhcceeEEEEcCCCCeEEEc
Confidence 45566777777777778888
Q ss_pred ccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCcee
Q 001386 753 ASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKT 831 (1088)
Q Consensus 753 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~ 831 (1088)
+.|+.+..|...++... |-.. .....|...|.+++..++ .+++|+ |.++.+-.....+.
T Consensus 264 Gvd~~ii~~~~~~~~~~---------wv~~---------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~ 323 (691)
T KOG2048|consen 264 GVDPKIIQYSLTTNKSE---------WVIN---------SRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKN 323 (691)
T ss_pred cCCCceEEEEecCCccc---------eeee---------ccccCCcccceeeeeecc--eEEecceeeEEEEccccccCc
Confidence 88888777765544320 2111 122248889999999888 666665 77777665543222
Q ss_pred EEEecCCCCCeEE-EEEcCCCCcEEEEEeCCCeEEEEEcCCce---------eeeeeccccCCeeEEEECCCCCEEEEEe
Q 001386 832 ILTIMPPSPTATS-LAFNPHDNNVIAIGMDDSTILIYNARSSE---------VISKLEGHSKRVTGLVFSDALNILVSSG 901 (1088)
Q Consensus 832 ~~~~~~~~~~i~~-l~~sp~d~~~lasg~~dg~i~lwd~~~~~---------~~~~l~~h~~~V~~l~~s~dg~~las~s 901 (1088)
..........-.+ +...| .++|..--.+..+.+|.+.+.. +++........|.+.+.||||++++.+.
T Consensus 324 ~~h~~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st 401 (691)
T KOG2048|consen 324 MDHRQKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAIST 401 (691)
T ss_pred hhhhccccccccceeecCc--cceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEee
Confidence 1111100011111 23333 4566666667788999887651 1222222334599999999999999776
Q ss_pred CCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-E-eCCeEEEEEcCccee--eeeee-cCCCcC
Q 001386 902 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V-HETHLAIYEAEELTC--LKQWF-PISSVP 976 (1088)
Q Consensus 902 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~-~d~~i~vwd~~~~~~--~~~~~-~~h~~~ 976 (1088)
- ..++||.++.........+.... ........+.|+-|++.++. + ....+.+++..+... +.... .+--..
T Consensus 402 ~-~~~~iy~L~~~~~vk~~~v~~~~---~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~ 477 (691)
T KOG2048|consen 402 V-SRTKIYRLQPDPNVKVINVDDVP---LALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPS 477 (691)
T ss_pred c-cceEEEEeccCcceeEEEeccch---hhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCc
Confidence 4 34789988764322222222221 11225788999999988887 4 456788887765432 22211 123578
Q ss_pred EEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeC
Q 001386 977 ISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1056 (1088)
Q Consensus 977 v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l 1056 (1088)
|..++.|+||.|+|+.+.+|.|.+|++.+++..+...... ...++++|+|.+.+.|+++..|++|+-+|+
T Consensus 478 I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln----------~~vTa~~~~~~~~~~lvvats~nQv~efdi 547 (691)
T KOG2048|consen 478 ISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLN----------IDVTAAAFSPFVRNRLVVATSNNQVFEFDI 547 (691)
T ss_pred ceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccC----------cceeeeeccccccCcEEEEecCCeEEEEec
Confidence 9999999999999999999999999999998765442111 345678899778889999999999999999
Q ss_pred CC
Q 001386 1057 NE 1058 (1088)
Q Consensus 1057 ~~ 1058 (1088)
..
T Consensus 548 ~~ 549 (691)
T KOG2048|consen 548 EA 549 (691)
T ss_pred ch
Confidence 33
No 48
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.1e-34 Score=282.89 Aligned_cols=284 Identities=21% Similarity=0.301 Sum_probs=248.3
Q ss_pred CCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEE
Q 001386 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1088)
Q Consensus 333 h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~la 412 (1088)
-+..|..|.|.|+|++ |++|+..|.+.+|+..+-.- ..++..|..+|+++.||++|.+++
T Consensus 95 vkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~fnF-------------------EtilQaHDs~Vr~m~ws~~g~wmi 154 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTSFNF-------------------ETILQAHDSPVRTMKWSHNGTWMI 154 (464)
T ss_pred cccceeeEEEcCCCce-eEeecccccEEEecCceeeH-------------------HHHhhhhcccceeEEEccCCCEEE
Confidence 3458999999999996 78999999999999743221 123677999999999999999999
Q ss_pred EEeCCCEEEEEEccCCCcccceeEecc-CCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEE
Q 001386 413 VAYSKHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1088)
Q Consensus 413 s~~~dg~i~vwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 491 (1088)
+|+.+|.|++|+..-.. ++ .+.+ |...|++++|+|... .+++++.||+|+|||....+.-..+.+|.-.|.++
T Consensus 155 SgD~gG~iKyWqpnmnn-Vk---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv 228 (464)
T KOG0284|consen 155 SGDKGGMIKYWQPNMNN-VK---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV 228 (464)
T ss_pred EcCCCceEEecccchhh-hH---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence 99999999999987543 22 3444 448999999999888 79999999999999999998888999999999999
Q ss_pred eeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEE
Q 001386 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1088)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1088)
.|+|.. .++++|+.|..|++||.+++.++.++..|...|..+.|++++++|++++. +..++++|+++.+.+..+
T Consensus 229 dWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 229 DWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFTY 302 (464)
T ss_pred ccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHHh
Confidence 999876 48999999999999999999999999999999999999999999999986 556999999999999999
Q ss_pred eccccccccEEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEe
Q 001386 572 QGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1088)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 650 (1088)
++|. ..+.++.|+|-. ..|.+|+.||.|..|.+...+++..+.. .+...|.+++|+|-|.+|++|+.|.++++|.
T Consensus 303 r~Hk---kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 303 RGHK---KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred hcch---hhheeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCcceeeec
Confidence 9998 899999999965 4566689999999999986666666543 3345799999999999999999999999997
Q ss_pred CC
Q 001386 651 TP 652 (1088)
Q Consensus 651 ~~ 652 (1088)
-.
T Consensus 379 r~ 380 (464)
T KOG0284|consen 379 RN 380 (464)
T ss_pred cC
Confidence 55
No 49
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.5e-32 Score=267.41 Aligned_cols=295 Identities=14% Similarity=0.230 Sum_probs=259.4
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEE
Q 001386 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vw 470 (1088)
++.+|.+.|.|+++.|-..++++|+.|++|+|||+.+|+... ++.||-..|..+++|+-.. ++++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 378899999999999999999999999999999999997544 7889999999999999888 89999999999999
Q ss_pred eCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeC
Q 001386 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1088)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 550 (1088)
|++..+.++.+.||-..|.+++.+|.- ..|++|+.|.++++||+++...+..+.+|..+|.++.+.|-...+++++.
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~- 297 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH- 297 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC-
Confidence 999999999999999999999998865 48999999999999999999999999999999999999998889999876
Q ss_pred CCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEE
Q 001386 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1088)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1088)
+.+|++||+..|+...++..|. ..+.+++.+|....+++++.| .|+-|++..|..+..+..+.. .+++++.
T Consensus 298 ---D~tvrlWDl~agkt~~tlt~hk---ksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~--iintl~~ 368 (460)
T KOG0285|consen 298 ---DSTVRLWDLRAGKTMITLTHHK---KSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNA--IINTLSV 368 (460)
T ss_pred ---CceEEEeeeccCceeEeeeccc---ceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccc--eeeeeee
Confidence 6669999999999999999888 899999999999888888876 489999999999998876644 5889998
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccc
Q 001386 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 710 (1088)
Q Consensus 631 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 710 (1088)
+.|+ ++++|++.|.+.+||..++..++....... -|+
T Consensus 369 nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vq-------------------------------------pGS----- 405 (460)
T KOG0285|consen 369 NSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQ-------------------------------------PGS----- 405 (460)
T ss_pred ccCc-eEEEcCCceEEEEEecCcCccccccccccc-------------------------------------CCc-----
Confidence 8877 788999999999999998866554321000 000
Q ss_pred eeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccC
Q 001386 711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR 765 (1088)
Q Consensus 711 ~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~ 765 (1088)
......|.+.+|...|.+|+++..|.+|++|.-+.
T Consensus 406 --------------------l~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 406 --------------------LESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred --------------------cccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 01345788999999999999999999999997543
No 50
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=6.8e-34 Score=288.72 Aligned_cols=296 Identities=16% Similarity=0.248 Sum_probs=253.4
Q ss_pred CCchhheeecccCCCCceeeeecC-CCCeEEEEEcccCcEEEEecCC-CcceeeeceeeeeeccccccceeeeecCCCCC
Q 001386 321 DFPKTVAQTLIEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398 (1088)
Q Consensus 321 ~~p~~~~~~l~~h~~~V~~v~~sp-dg~~lla~g~~dg~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~ 398 (1088)
-+|...++++.||+..|+++.|.| .+. ||++|+.|+.|+||++-. ++++++ +.||..+
T Consensus 201 ~~Pkk~~~~~~gH~kgvsai~~fp~~~h-LlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~ 260 (503)
T KOG0282|consen 201 YLPKKLSHNLSGHTKGVSAIQWFPKKGH-LLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKP 260 (503)
T ss_pred eccHhheeeccCCccccchhhhccceee-EEEecCCCceEEEEEEecCcceehh-------------------hhcchhh
Confidence 358899999999999999999999 665 999999999999999977 777776 7889999
Q ss_pred eEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001386 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1088)
Q Consensus 399 V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~ 478 (1088)
|.+++|+++|..+.+++.|+.|++||+++|+++..+ . ....++|+.|.||+.+ .+++|+.|+.|+.||+++++.+
T Consensus 261 Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f---~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvv 335 (503)
T KOG0282|consen 261 VRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRF---H-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVV 335 (503)
T ss_pred hhhhhccccCCeeeeeecceeeeeeccccceEEEEE---e-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHH
Confidence 999999999999999999999999999999876633 1 2347899999999965 7888999999999999999999
Q ss_pred EEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceE-EecCCCCceEEEEEccCCCEEEEEeeCCCCceeE
Q 001386 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1088)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i 557 (1088)
+.+..|-+.|..+.|. ++|..+++.+.|+.+++|+.+..-... ........+.++..+|++.++++-+. ++.|
T Consensus 336 qeYd~hLg~i~~i~F~--~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i 409 (503)
T KOG0282|consen 336 QEYDRHLGAILDITFV--DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYI 409 (503)
T ss_pred HHHHhhhhheeeeEEc--cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceE
Confidence 9999999999999994 577899999999999999998766544 33344557788999999999998764 5668
Q ss_pred EEEeCCCC---ceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec-C
Q 001386 558 VEWNESEG---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-N 633 (1088)
Q Consensus 558 ~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~ 633 (1088)
.++..... ...+.+.||... +.-..+.|+|||.+|++|+.||.+.+||..+-+++..+..|.. .+..+.|+| .
T Consensus 410 ~ifs~~~~~r~nkkK~feGh~va-Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~--~ci~v~wHP~e 486 (503)
T KOG0282|consen 410 AIFSTVPPFRLNKKKRFEGHSVA-GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ--PCIGVDWHPVE 486 (503)
T ss_pred EEEecccccccCHhhhhcceecc-CceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc--ceEEEEecCCC
Confidence 88876532 344567777632 3456689999999999999999999999999999999998744 688999999 4
Q ss_pred CCEEEEEeCCCcEEEEe
Q 001386 634 GTLLAVIANENRIKILE 650 (1088)
Q Consensus 634 ~~~l~~~~~dg~i~iwd 650 (1088)
...+|+++.+|.|++|+
T Consensus 487 ~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 487 PSKVATCGWDGLIKIWD 503 (503)
T ss_pred cceeEecccCceeEecC
Confidence 57899999999999996
No 51
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.8e-33 Score=275.23 Aligned_cols=293 Identities=16% Similarity=0.178 Sum_probs=251.5
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEE
Q 001386 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vw 470 (1088)
++..|...|.-+.||++|+|||+++.|.+..+|++.....++..+++.+|..+|..+.||||.+ ++++++.|..+.+|
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW 296 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence 4788999999999999999999999999999999988777777789999999999999999999 89999999999999
Q ss_pred eCCCCceeEEec-cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEee
Q 001386 471 DAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1088)
Q Consensus 471 d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 549 (1088)
|+.+|.+.+.+. ++...+.+++|. +||..+++|+.|+.+..||++......--......|.+++.++||+++++.+.
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~--pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~ 374 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWC--PDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTV 374 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEc--cCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEec
Confidence 999999987774 356788999995 57789999999999999998754422211222346899999999999999876
Q ss_pred CCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEE
Q 001386 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1088)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1088)
+..|++++..+......+..+ .+|++++.+.+++++++.-.+..+++||++..+.+..+.++.....+..-+
T Consensus 375 ----d~~i~l~~~e~~~dr~lise~----~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSC 446 (519)
T KOG0293|consen 375 ----DKKIRLYNREARVDRGLISEE----QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSC 446 (519)
T ss_pred ----ccceeeechhhhhhhcccccc----CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEec
Confidence 445999998877666555544 489999999999999999999999999999888888888776544555556
Q ss_pred Eec-CCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCc
Q 001386 630 FNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708 (1088)
Q Consensus 630 ~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 708 (1088)
|.- +..++++|+.|+.|+||+..+++.+..+.+|...|.+++++|. +..++++++.||
T Consensus 447 Fgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~---------------------~p~m~ASasDDg 505 (519)
T KOG0293|consen 447 FGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPA---------------------DPEMFASASDDG 505 (519)
T ss_pred cCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCC---------------------CHHHhhccCCCC
Confidence 654 5689999999999999999999999999999999999999974 566799999999
Q ss_pred cceecccc
Q 001386 709 KSEVEKPL 716 (1088)
Q Consensus 709 ~i~vw~~~ 716 (1088)
+||+|...
T Consensus 506 tIRIWg~~ 513 (519)
T KOG0293|consen 506 TIRIWGPS 513 (519)
T ss_pred eEEEecCC
Confidence 99999865
No 52
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.8e-31 Score=246.35 Aligned_cols=293 Identities=16% Similarity=0.236 Sum_probs=238.1
Q ss_pred ccccccEEEEEEecC-CceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecC
Q 001386 731 KVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 809 (1088)
Q Consensus 731 ~~~~~~i~~~~~s~~-g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 809 (1088)
.+|.+++..++++|. |..|++++.|..|++|+...+.. .........+|...|++++++|.
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s------------------~~ck~vld~~hkrsVRsvAwsp~ 72 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS------------------WTCKTVLDDGHKRSVRSVAWSPH 72 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc------------------EEEEEeccccchheeeeeeecCC
Confidence 348889999999999 88899999999999998653111 11121222369999999999999
Q ss_pred CCEEEEEe-CCcEEEEEcC--CceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc---eeeeeeccccC
Q 001386 810 DAYLFSAS-GGVISLYIVM--TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEGHSK 883 (1088)
Q Consensus 810 g~~l~~~~-dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~---~~~~~l~~h~~ 883 (1088)
|++||+++ |.++.||.-. +.+++.++.+|..+|.|++|++ +|.+||+++.|++|.||.+..+ ++...|+.|+.
T Consensus 73 g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq 151 (312)
T KOG0645|consen 73 GRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ 151 (312)
T ss_pred CcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc
Confidence 99999999 9999999865 4578899999999999999999 8999999999999999999754 67889999999
Q ss_pred CeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCc
Q 001386 884 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE 962 (1088)
Q Consensus 884 ~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~ 962 (1088)
.|..+.|+|...+|+|+|.|.+|++|+-..+ ....+.+.+.+|.. .|.+++|++.|..|++ +.|++++||...+
T Consensus 152 DVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d--ddW~c~~tl~g~~~---TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~ 226 (312)
T KOG0645|consen 152 DVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD--DDWECVQTLDGHEN---TVWSLAFDNIGSRLVSCSDDGTVSIWRLYT 226 (312)
T ss_pred cccEEEEcCCcceeEEeccCCeEEEEeecCC--CCeeEEEEecCccc---eEEEEEecCCCceEEEecCCcceEeeeecc
Confidence 9999999999999999999999999998731 23678888888876 7999999999999998 5778999998552
Q ss_pred ceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEE
Q 001386 963 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1042 (1088)
Q Consensus 963 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l 1042 (1088)
.+..-|...+..++|. ...|++++.|+.|+++.-..+..-..+.... .....|+ +-..++.|.|...++|
T Consensus 227 -----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~-~~~~aHe--~dVNsV~w~p~~~~~L 296 (312)
T KOG0645|consen 227 -----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLA-KKEGAHE--VDVNSVQWNPKVSNRL 296 (312)
T ss_pred -----CcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHH-hhhcccc--cccceEEEcCCCCCce
Confidence 2344578899999998 4579999999999999877543222222111 1122223 3456799999557899
Q ss_pred EEEeCCCcEEEEeCC
Q 001386 1043 AVGLTNGEVYVIEPN 1057 (1088)
Q Consensus 1043 ~~~~~dg~v~~w~l~ 1057 (1088)
++|++||.|++|.+.
T Consensus 297 ~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 297 ASGGDDGIVNFWELE 311 (312)
T ss_pred eecCCCceEEEEEec
Confidence 999999999999985
No 53
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.5e-32 Score=295.11 Aligned_cols=247 Identities=18% Similarity=0.329 Sum_probs=227.9
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCc--------c--------------------cceeEeccCCCCEEE
Q 001386 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--------A--------------------RQQLEIDAHVGNVND 446 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~--------~--------------------~~~~~~~~h~~~v~~ 446 (1088)
-...++|..|++|++.||.|..|..|++|.+...+. + ....++.||+++|..
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 446799999999999999999999999999984221 0 113458899999999
Q ss_pred EEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEec
Q 001386 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 526 (1088)
Q Consensus 447 ~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 526 (1088)
+.|+|+.+ +|+++|.|+++|+|.+.+..++..++||..+|+.+.|+ |.|.+++|++.|++.++|..+.......+.
T Consensus 457 ~sFsPd~r--fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~--P~GyYFatas~D~tArLWs~d~~~PlRifa 532 (707)
T KOG0263|consen 457 CSFSPDRR--FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFA--PRGYYFATASHDQTARLWSTDHNKPLRIFA 532 (707)
T ss_pred eeeccccc--ceeeccCCcceeeeecccceeEEEecCCCcceeeEEec--CCceEEEecCCCceeeeeecccCCchhhhc
Confidence 99999999 89999999999999999999999999999999999995 578999999999999999999999999999
Q ss_pred CCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001386 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606 (1088)
Q Consensus 527 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd 606 (1088)
+|...|.|+.|+|+..++++|+. +.++++||+.+|..++.|.||. ++|.+++|+|+|.+|++|+.||.|.+||
T Consensus 533 ghlsDV~cv~FHPNs~Y~aTGSs----D~tVRlWDv~~G~~VRiF~GH~---~~V~al~~Sp~Gr~LaSg~ed~~I~iWD 605 (707)
T KOG0263|consen 533 GHLSDVDCVSFHPNSNYVATGSS----DRTVRLWDVSTGNSVRIFTGHK---GPVTALAFSPCGRYLASGDEDGLIKIWD 605 (707)
T ss_pred ccccccceEEECCcccccccCCC----CceEEEEEcCCCcEEEEecCCC---CceEEEEEcCCCceEeecccCCcEEEEE
Confidence 99999999999999999999976 6679999999999999999988 9999999999999999999999999999
Q ss_pred cCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 001386 607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
+.+++++..+..| ...|.++.|+.||..||+|+.|.+|++||+...
T Consensus 606 l~~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 606 LANGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cCCCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999999988 446999999999999999999999999998754
No 54
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.6e-30 Score=282.73 Aligned_cols=287 Identities=25% Similarity=0.412 Sum_probs=254.7
Q ss_pred eecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
+++.+|.+.|++++|+|+++ ++++++.||.|.+|++.+++.... +..|...+..+.|+|+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~ 62 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASAD 62 (289)
T ss_pred hHhcccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCC
Confidence 56789999999999999998 688999999999999998875543 5678899999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCcc
Q 001386 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1088)
Q Consensus 408 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1088)
+++|++++.+|.|++||+.+++... .+..|...|.++.|+++++ ++++++.|+.|++||+.+++....+..|...
T Consensus 63 ~~~l~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 137 (289)
T cd00200 63 GTYLASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDW 137 (289)
T ss_pred CCEEEEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCc
Confidence 9999999999999999999875544 5778999999999999977 7888888999999999999999999999999
Q ss_pred EEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCce
Q 001386 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1088)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1088)
+.++++++. +.++++++.||.|++||++..+....+..+...+.+++|+|+++.+++++. ++.+.+||..+++.
T Consensus 138 i~~~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~ 211 (289)
T cd00200 138 VNSVAFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKC 211 (289)
T ss_pred EEEEEEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCce
Confidence 999999654 568888888999999999988888888888889999999999999998875 55699999999988
Q ss_pred eEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEE
Q 001386 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1088)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1088)
+..+..+. ..+.++.|+|++.++++++.+|.|++|++.+++....+..+. ..+.+++|+|+++++++++.||.++
T Consensus 212 ~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 212 LGTLRGHE---NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT--NSVTSLAWSPDGKRLASGSADGTIR 286 (289)
T ss_pred ecchhhcC---CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC--CcEEEEEECCCCCEEEEecCCCeEE
Confidence 88887776 799999999998888888889999999999999888887553 3689999999999999999999999
Q ss_pred EEe
Q 001386 648 ILE 650 (1088)
Q Consensus 648 iwd 650 (1088)
+|+
T Consensus 287 iw~ 289 (289)
T cd00200 287 IWD 289 (289)
T ss_pred ecC
Confidence 996
No 55
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.1e-32 Score=266.90 Aligned_cols=273 Identities=22% Similarity=0.324 Sum_probs=233.9
Q ss_pred CCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEE
Q 001386 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1088)
Q Consensus 333 h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~la 412 (1088)
..+.|.|+++.. + .+++|..|.+|+|||.++-++++. +.||++.|.|+.|. .+.|+
T Consensus 196 ~skgVYClQYDD-~--kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GHtGSVLCLqyd--~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDD-E--KIVSGLRDNTIKIWDKNSLECLKI-------------------LTGHTGSVLCLQYD--ERVIV 251 (499)
T ss_pred cCCceEEEEecc-h--hhhcccccCceEEeccccHHHHHh-------------------hhcCCCcEEeeecc--ceEEE
Confidence 456899999953 3 479999999999999999888865 89999999999994 67999
Q ss_pred EEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce---eEEeccCCccEE
Q 001386 413 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPVY 489 (1088)
Q Consensus 413 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~---~~~~~~~~~~v~ 489 (1088)
+|+.|.+|+|||+++|++++ ++-+|...|..+.|+.. ++++++.|.++.+||+..... .+.+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999887 67799999999999853 799999999999999987653 367789999999
Q ss_pred EEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeE
Q 001386 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1088)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1088)
.+.| +.+++++++.|++|++|++.+.+.+.++.+|...|.|+.+ .|+++++|+. +.+|++||+..|.+++
T Consensus 325 vVdf----d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 325 VVDF----DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 394 (499)
T ss_pred eecc----ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence 9988 4579999999999999999999999999999999977664 6788888865 6679999999999999
Q ss_pred EEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeee---------EEEeCCCCCCCCceEEEecCCCEEEEE
Q 001386 570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL---------TTIDAGGGLPENPRICFNKNGTLLAVI 640 (1088)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~---------~~~~~~~~~~~v~~v~~s~~~~~l~~~ 640 (1088)
.++||. .-|.++.|. .+.+++|+.||+|++||+..+..- ..+..+ ...|..+.|. ...+++.
T Consensus 395 vLeGHE---eLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~h--sgRVFrLQFD--~fqIvss 465 (499)
T KOG0281|consen 395 VLEGHE---ELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEH--SGRVFRLQFD--EFQIISS 465 (499)
T ss_pred HHhchH---Hhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhc--cceeEEEeec--ceEEEec
Confidence 999999 899999995 578999999999999999875432 222222 3356677764 5678999
Q ss_pred eCCCcEEEEeCCCCC
Q 001386 641 ANENRIKILETPESN 655 (1088)
Q Consensus 641 ~~dg~i~iwd~~~~~ 655 (1088)
+.|.+|.|||...+.
T Consensus 466 sHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 466 SHDDTILIWDFLNGP 480 (499)
T ss_pred cCCCeEEEEEcCCCC
Confidence 999999999998763
No 56
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3e-32 Score=270.34 Aligned_cols=278 Identities=17% Similarity=0.223 Sum_probs=242.0
Q ss_pred CCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccc
Q 001386 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1088)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 703 (1088)
.|..+.|.|+|+.|++|+..|.+.+|+...-..
T Consensus 98 ~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF----------------------------------------------- 130 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF----------------------------------------------- 130 (464)
T ss_pred ceeeEEEcCCCceeEeecccccEEEecCceeeH-----------------------------------------------
Confidence 588999999999999999999999998641100
Q ss_pred cccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCC
Q 001386 704 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRH 783 (1088)
Q Consensus 704 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~ 783 (1088)
.+-...|...|+++.|+.+|..++++..+|.|++|+...+-. +
T Consensus 131 -----------------------EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV--------k------ 173 (464)
T KOG0284|consen 131 -----------------------ETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV--------K------ 173 (464)
T ss_pred -----------------------HHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh--------H------
Confidence 001123888999999999999999999999999998654321 0
Q ss_pred CCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC
Q 001386 784 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 862 (1088)
Q Consensus 784 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg 862 (1088)
.....|...|++++|||+...+++++ ||+|+|||....+.-..+.+|.-.|++++|+| ...+||+|+.|.
T Consensus 174 --------~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDn 244 (464)
T KOG0284|consen 174 --------IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDN 244 (464)
T ss_pred --------HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccCCc
Confidence 01113668999999999999999998 89999999999998889999999999999999 778999999999
Q ss_pred eEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcC
Q 001386 863 TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 942 (1088)
Q Consensus 863 ~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~ 942 (1088)
.|++||.++|.++.++.+|...|..+.|++++++|+|+|.|..++++|+.+ ..-+....+|.. .++++.|+|
T Consensus 245 lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~-----mkEl~~~r~Hkk---dv~~~~WhP 316 (464)
T KOG0284|consen 245 LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT-----MKELFTYRGHKK---DVTSLTWHP 316 (464)
T ss_pred eeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH-----hHHHHHhhcchh---hheeecccc
Confidence 999999999999999999999999999999999999999999999999985 335666677766 799999999
Q ss_pred CCCEEEE--EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEE
Q 001386 943 DQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1002 (1088)
Q Consensus 943 dg~~l~~--~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd 1002 (1088)
-..-|++ |.||.|..|.+...+.+..+..+|...|.+++|.|=|..|++|+.|.++++|.
T Consensus 317 ~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 317 LNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 7766655 68999999999988888888889999999999999999999999999999996
No 57
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=3.2e-30 Score=291.43 Aligned_cols=291 Identities=21% Similarity=0.313 Sum_probs=254.5
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeC-
Q 001386 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA- 472 (1088)
Q Consensus 394 ~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~- 472 (1088)
.|...|.++.|++||+++++++.++.+++|+..+++. .....+.+|...|.+++|+||++ ++++++.|++|+|||+
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLK 233 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc--EEEEecCCceEEEeecc
Confidence 3588999999999999999999999999999977762 22335689999999999999999 8999999999999999
Q ss_pred CCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCC
Q 001386 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1088)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~ 552 (1088)
..+.+++++.+|...|++++|++ +++++++|+.|++|++||+++++....+..|...|.+++|++++++|++++.
T Consensus 234 ~~~~~~~~l~gH~~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~--- 308 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY--- 308 (456)
T ss_pred CCCeEEEEecCCCCceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC---
Confidence 56689999999999999999965 5589999999999999999999999999999999999999999999999864
Q ss_pred CceeEEEEeCCCCc--eeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCC-CCCceEE
Q 001386 553 GESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRIC 629 (1088)
Q Consensus 553 ~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~ 629 (1088)
++.|++||..++. +...+.++.... .++++.|+|++.++++++.|+.+++||+..+.....+..+... ..+.+..
T Consensus 309 -d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 309 -DGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred -CccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence 6679999999999 567888877333 6999999999999999999999999999999999998877653 1334555
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCCcccccccc-cCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccc--c
Q 001386 630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE--A 706 (1088)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~ 706 (1088)
.++.+.++++|+.|+.|.+|+..++..+..+.+| ...+..+.++| ...++++++ .
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~----------------------~~~~~~s~s~~~ 444 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHP----------------------TENLIASSSFEG 444 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCC----------------------CcCeeeecCcCC
Confidence 6789999999999999999999999999999999 77777777774 455666666 6
Q ss_pred Cccceecccc
Q 001386 707 ENKSEVEKPL 716 (1088)
Q Consensus 707 d~~i~vw~~~ 716 (1088)
|+.+++|...
T Consensus 445 d~~~~~w~~~ 454 (456)
T KOG0266|consen 445 DGLIRLWKYD 454 (456)
T ss_pred CceEEEecCC
Confidence 7889999754
No 58
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.97 E-value=1.2e-29 Score=264.24 Aligned_cols=632 Identities=16% Similarity=0.170 Sum_probs=352.3
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
..+-.|.+|.+.|+.+.|||-...|||+++.|..|+||.+..|-... .......+.+..-.|.|+.|
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-------------LSape~~~g~~~~~vE~l~f 136 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-------------LSAPEIDVGGGNVIVECLRF 136 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-------------cCCcceeecCCceEEEEeec
Confidence 34567889999999999999777799999999999999998553211 01122335566678899999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC-CceeEEecc
Q 001386 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTYSFEG 483 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~-~~~~~~~~~ 483 (1088)
+|...-|...+..|+++|||+.+++.+. ++.+|...|.++.|+.||+ ++++++.|+.|+|||.+. ++.++..++
T Consensus 137 HpTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~ 211 (1012)
T KOG1445|consen 137 HPTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEG 211 (1012)
T ss_pred ccCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccc
Confidence 9966666666688999999999987554 7889999999999999999 899999999999999874 678888888
Q ss_pred CCccE-EEEeeeeeCCceEEEEEecC----CeEEEEECCCCCc-eEEecC-CCCceEEEEEccCCCEEEEEeeCCCCcee
Q 001386 484 HGAPV-YSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGA-RVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1088)
Q Consensus 484 ~~~~v-~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~-~~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 556 (1088)
|.+.- ..+.| .++-..|++.+.+ ..|++||.+.-.. ..++.. ....|.---|.||.++|+.++ .|+..
T Consensus 212 H~~~rdsRv~w--~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaG---KG~~~ 286 (1012)
T KOG1445|consen 212 HGGMRDSRVLW--AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAG---KGTNK 286 (1012)
T ss_pred cccchhheeee--ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEec---CCcce
Confidence 87642 22333 4444566666654 4599999876443 222222 222455567899999998876 56777
Q ss_pred EEEEeCCCCceeE--EEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceE-EEe--
Q 001386 557 LVEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI-CFN-- 631 (1088)
Q Consensus 557 i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~s-- 631 (1088)
++.+.+...+..- .++... .......++-|....-+..++ ..+++.+.+...+-.. .+ .+. .+. .|+
T Consensus 287 l~~lE~~d~qPyLs~v~~~tl--e~~~~GA~lvpkral~VM~~E--V~rvlQLt~~~ivPi~-y~--VPR-ksyrdFH~D 358 (1012)
T KOG1445|consen 287 LFMLEMQDRQPYLSHVFELTL--EEQTLGATLVPKRALHVMDGE--VDRVLQLTKSSIVPIP-YI--VPR-KSYRDFHSD 358 (1012)
T ss_pred EEEEEecCCCcchhhhhhhcc--hhhhccceecchhhhhhcchh--hhhheecccCceeecc-cc--cch-hhhhhhhhh
Confidence 8888876554321 111100 011233334443222222211 1223333222111110 00 000 000 111
Q ss_pred --cCCCEEEEEeCCCcEEEEeCCCCCccccc------ccc------------------cCcceeeeecCC--Ccceeccc
Q 001386 632 --KNGTLLAVIANENRIKILETPESNSVDAA------GVL------------------SDNLRKLSVNPI--STVTGAGI 683 (1088)
Q Consensus 632 --~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~------------------~~~v~~~~~~p~--~~~~~~~~ 683 (1088)
|+..-...++.-| -|-..+++.++.. +.| ...+......|. ......+.
T Consensus 359 LfPeT~G~~p~~~ag---eWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~ 435 (1012)
T KOG1445|consen 359 LFPETRGAEPGCTAG---EWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSN 435 (1012)
T ss_pred hCccccCCccCcCcc---ceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCcccccccccc
Confidence 1110000000000 0111111111000 000 000111111110 00000000
Q ss_pred cCC------ce---------eecCCCCCCC------CcccccccCc--------cceeccccc---c----CCC---cce
Q 001386 684 ANG------SV---------SVNEDPKEDV------KPEISVEAEN--------KSEVEKPLF---A----RPS---ECQ 724 (1088)
Q Consensus 684 ~~~------~~---------~~~~~~~~~~------~~l~~~~~d~--------~i~vw~~~~---~----~~~---~~~ 724 (1088)
+.- .+ .......+.| ..-.+-+... .+.+-.... . .+. ..+
T Consensus 436 ~~Pd~~~qpaV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~ 515 (1012)
T KOG1445|consen 436 NVPDVQEQPAVPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAF 515 (1012)
T ss_pred CCCccccCCCcCcchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccc
Confidence 000 00 0000001111 0000000000 000000000 0 000 000
Q ss_pred eeecCC-----------------------------------------ccccc-cEEE------------EEEecCCceEE
Q 001386 725 SLLLPS-----------------------------------------KVKAN-KISR------------LTYNNGGQAIF 750 (1088)
Q Consensus 725 ~~~~~~-----------------------------------------~~~~~-~i~~------------~~~s~~g~~l~ 750 (1088)
.-..|. .+|.. .|.. =-|..+..+++
T Consensus 516 ~ksvPe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvA 595 (1012)
T KOG1445|consen 516 GKSVPEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVA 595 (1012)
T ss_pred cccCCCCCCcccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEE
Confidence 000000 00000 0000 00111122222
Q ss_pred --EeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEec-CCCEEEEEe-CCcEEEEEc
Q 001386 751 --ALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-NDAYLFSAS-GGVISLYIV 826 (1088)
Q Consensus 751 --~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~-dg~i~iwd~ 826 (1088)
..+..|.|.||++..... +..|. ++..-....|+.+.|.| |.+.||++. ||.|++|.+
T Consensus 596 VPL~g~gG~iai~el~~PGr------------LPDgv------~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~ 657 (1012)
T KOG1445|consen 596 VPLAGSGGVIAIYELNEPGR------------LPDGV------MPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRL 657 (1012)
T ss_pred EEecCCCceEEEEEcCCCCC------------CCccc------ccccccCceeeecccCCCChHHeeecccCceEEEEEe
Confidence 234456777777654332 11111 12222566789999999 777888886 899999998
Q ss_pred CCce-------eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEE
Q 001386 827 MTFK-------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVS 899 (1088)
Q Consensus 827 ~~~~-------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las 899 (1088)
..+. .-..+..|...|+++.|+|-....|++++.|-+|++||+.+++....|.+|++.|.+++|||||+.+|+
T Consensus 658 ~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~At 737 (1012)
T KOG1445|consen 658 TANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIAT 737 (1012)
T ss_pred ccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceee
Confidence 7543 345677899999999999987889999999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEE
Q 001386 900 SGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQ 979 (1088)
Q Consensus 900 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~ 979 (1088)
.+.||+|++|+-.+++.. +. ++.-. . ..+-..
T Consensus 738 VcKDg~~rVy~Prs~e~p----v~--Eg~gp---------------------------------------v---gtRgAR 769 (1012)
T KOG1445|consen 738 VCKDGTLRVYEPRSREQP----VY--EGKGP---------------------------------------V---GTRGAR 769 (1012)
T ss_pred eecCceEEEeCCCCCCCc----cc--cCCCC---------------------------------------c---cCccee
Confidence 999999999998875411 11 11110 0 122234
Q ss_pred EEEeeCCCEEEEEeCC----CcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001386 980 ATFSCDCRMVFTSFVD----GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1055 (1088)
Q Consensus 980 l~fs~dg~~l~s~s~d----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~ 1055 (1088)
+.|..||+++++.+-| ..|.+||..+..+..-.....-..+ .++.=.++++.+.+|++|-.|..|++|+
T Consensus 770 i~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap-------s~LvP~YD~Ds~~lfltGKGD~~v~~yE 842 (1012)
T KOG1445|consen 770 ILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP-------SPLVPHYDYDSNVLFLTGKGDRFVNMYE 842 (1012)
T ss_pred EEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccC-------ccccccccCCCceEEEecCCCceEEEEE
Confidence 5666678777766655 4577887766553211110000000 0111235666677899999999999999
Q ss_pred CCCCCCCc
Q 001386 1056 PNEPGDTW 1063 (1088)
Q Consensus 1056 l~~~~~~~ 1063 (1088)
+....+-.
T Consensus 843 v~~esPy~ 850 (1012)
T KOG1445|consen 843 VIYESPYL 850 (1012)
T ss_pred ecCCCcee
Confidence 98777544
No 59
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.3e-30 Score=236.92 Aligned_cols=272 Identities=20% Similarity=0.304 Sum_probs=238.6
Q ss_pred eeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEE
Q 001386 390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1088)
Q Consensus 390 ~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~v 469 (1088)
.++..|+++|.++.|+-||+|.++++.|.+|++|+...|.+++ ++.+|...|..++.+.|+. .+++|+.|+.+.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~v 85 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQV 85 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEE
Confidence 3477899999999999999999999999999999999998777 7889999999999999998 6999999999999
Q ss_pred EeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCC--ceEEecCCCCceEEEEEccCCCEEEEE
Q 001386 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1088)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~g~~l~~~ 547 (1088)
||+.+|+.++.+.+|.+.|+.+.| +.+...+++|+.|..+++||-++.. ++..+......|.++..+ +..+++|
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~f--NeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRF--NEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred EEcccCeeeeecccccceeeEEEe--cCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEee
Confidence 999999999999999999999999 5566799999999999999998754 455666666678777654 5667777
Q ss_pred eeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCce
Q 001386 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1088)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1088)
+. +++++.||++.|+....+-+ .+|++++|+++++..++++.|+++++.|-.+|+++..+.+|.....-..
T Consensus 162 S~----DGtvRtydiR~G~l~sDy~g-----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykld 232 (307)
T KOG0316|consen 162 SV----DGTVRTYDIRKGTLSSDYFG-----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLD 232 (307)
T ss_pred cc----CCcEEEEEeecceeehhhcC-----CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeee
Confidence 65 56699999999998777776 4599999999999999999999999999999999999998877655567
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCc-ceeeeecCCCcce
Q 001386 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN-LRKLSVNPISTVT 679 (1088)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~p~~~~~ 679 (1088)
.+++.....+++|+.||.+.+||+.....+..+..+... +..++++|.....
T Consensus 233 c~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f 285 (307)
T KOG0316|consen 233 CCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDF 285 (307)
T ss_pred eeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccce
Confidence 788888889999999999999999999888888877776 7888888754433
No 60
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=2.6e-31 Score=270.04 Aligned_cols=291 Identities=15% Similarity=0.194 Sum_probs=253.7
Q ss_pred eeecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEEccC-CCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcE
Q 001386 390 ALVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1088)
Q Consensus 390 ~~~~~h~~~V~~l~~s~-dg~~las~~~dg~i~vwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i 467 (1088)
..+.||...|+++.|.| .+.+|++++.|+.|+||++-. +++++ ++.+|..+|.+++|+++|. .++|+|.|+.|
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~l 282 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFL 282 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceee
Confidence 34889999999999999 999999999999999999987 66666 7889999999999999999 79999999999
Q ss_pred EEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001386 468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1088)
Q Consensus 468 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 547 (1088)
++||+++|+++.++. ....++++.|+|++ .+.+++|+.|+.|+.||+++++.+..+..|-+.|..+.|-++|+++++.
T Consensus 283 KlwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 999999999999986 45678899998875 4799999999999999999999999999999999999999999999999
Q ss_pred eeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC---eeeEEEeCCCCCCC
Q 001386 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV---QLLTTIDAGGGLPE 624 (1088)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~---~~~~~~~~~~~~~~ 624 (1088)
+. +..+++|+.+.+..++...... ...+.++..+|+++++++-+.|..|.++.+... .....+.+|.-...
T Consensus 361 SD----dks~riWe~~~~v~ik~i~~~~--~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGy 434 (503)
T KOG0282|consen 361 SD----DKSVRIWENRIPVPIKNIADPE--MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGY 434 (503)
T ss_pred cc----CccEEEEEcCCCccchhhcchh--hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCc
Confidence 76 4469999999887776655444 245778999999999999999999999986542 22334555543344
Q ss_pred CceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCccccc
Q 001386 625 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV 704 (1088)
Q Consensus 625 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 704 (1088)
-..+.|||||.+|++|..||.+.+||..+-+.+..++.|...+..+.|+|. ....++++
T Consensus 435 s~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~---------------------e~Skvat~ 493 (503)
T KOG0282|consen 435 SCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPV---------------------EPSKVATC 493 (503)
T ss_pred eeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCC---------------------CcceeEec
Confidence 567999999999999999999999999999999999999999999999974 34568899
Q ss_pred ccCccceecc
Q 001386 705 EAENKSEVEK 714 (1088)
Q Consensus 705 ~~d~~i~vw~ 714 (1088)
+-+|.|++|+
T Consensus 494 ~w~G~Ikiwd 503 (503)
T KOG0282|consen 494 GWDGLIKIWD 503 (503)
T ss_pred ccCceeEecC
Confidence 9999999996
No 61
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=5.8e-29 Score=304.30 Aligned_cols=294 Identities=14% Similarity=0.170 Sum_probs=238.4
Q ss_pred cccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-CC
Q 001386 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DG 408 (1088)
Q Consensus 330 l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~-dg 408 (1088)
+..|.+.|++++|+|+|+ ++|+|+.|++|+|||+.+...... ........+. +...|.+++|+| ++
T Consensus 479 ~~~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-----------~~~~~~~~~~-~~~~v~~l~~~~~~~ 545 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-----------DIHYPVVELA-SRSKLSGICWNSYIK 545 (793)
T ss_pred ccCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-----------ccccceEEec-ccCceeeEEeccCCC
Confidence 456899999999999998 799999999999999864211000 0000001122 346899999988 58
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecC-CCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCcc
Q 001386 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1088)
Q Consensus 409 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1088)
.+||+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++||+.++.++..+..+ ..
T Consensus 546 ~~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~ 619 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-AN 619 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CC
Confidence 899999999999999999886554 6789999999999997 667 8999999999999999999999888754 67
Q ss_pred EEEEeeeeeCCceEEEEEecCCeEEEEECCCCC-ceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC-
Q 001386 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG- 565 (1088)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~- 565 (1088)
+.++.|.+ +++.++++|+.||.|++||++... ....+..|...|.++.|. ++..+++++. ++.|++||+..+
T Consensus 620 v~~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~ 693 (793)
T PLN00181 620 ICCVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSI 693 (793)
T ss_pred eEEEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCc
Confidence 88888853 467899999999999999998765 455677888899999997 7888888875 556999998743
Q ss_pred -----ceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeC-----------CCCCCCCceEE
Q 001386 566 -----AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGLPENPRIC 629 (1088)
Q Consensus 566 -----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~v~~v~ 629 (1088)
..+..+.+|. ..+.+++|++++.++++|+.|+.|++|+......+..+.. ..+...|.+++
T Consensus 694 ~~~~~~~l~~~~gh~---~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ 770 (793)
T PLN00181 694 SGINETPLHSFMGHT---NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVC 770 (793)
T ss_pred cccCCcceEEEcCCC---CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEE
Confidence 5677888887 8899999999999999999999999999876654433221 12223589999
Q ss_pred EecCCCEEEEEeCCCcEEEEeC
Q 001386 630 FNKNGTLLAVIANENRIKILET 651 (1088)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iwd~ 651 (1088)
|+|++..|++|+.+|.|+||++
T Consensus 771 ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 771 WRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCeEEEecCCCcEEEEec
Confidence 9999999999999999999986
No 62
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=3.8e-31 Score=256.21 Aligned_cols=275 Identities=16% Similarity=0.256 Sum_probs=232.6
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001386 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~ 474 (1088)
....|.|+.+ |...+++|..|++|+|||.++-.+++ .+.||++.|.|+.|. .+ ++++|+.|.+|+|||+++
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccC
Confidence 3467999988 57789999999999999999987776 688999999999985 45 899999999999999999
Q ss_pred CceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc---eEEecCCCCceEEEEEccCCCEEEEEeeCC
Q 001386 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
|+++.++-+|...|..+.|+ ..++++++.|.++.+||+..... ...+.+|...|..+.|+. +++++++.
T Consensus 267 ge~l~tlihHceaVLhlrf~----ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASg-- 338 (499)
T KOG0281|consen 267 GEPLNTLIHHCEAVLHLRFS----NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASG-- 338 (499)
T ss_pred CchhhHHhhhcceeEEEEEe----CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecC--
Confidence 99999999999999999983 24999999999999999987653 346678888898888864 48888864
Q ss_pred CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEe
Q 001386 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1088)
+.+|++|+..+++.++++.+|. ..|.|+.+ .++++++|+.|.+|++||+..|.++..+.+|.. -|.++.|.
T Consensus 339 --DRTikvW~~st~efvRtl~gHk---RGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd 409 (499)
T KOG0281|consen 339 --DRTIKVWSTSTCEFVRTLNGHK---RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD 409 (499)
T ss_pred --CceEEEEeccceeeehhhhccc---ccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheeec
Confidence 6679999999999999999999 77887776 578999999999999999999999999998765 58999995
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCCc---------ccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCccc
Q 001386 632 KNGTLLAVIANENRIKILETPESNS---------VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 702 (1088)
Q Consensus 632 ~~~~~l~~~~~dg~i~iwd~~~~~~---------~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 702 (1088)
.+.+++|..||+|++||+..+.. +..+..|.+.|..+.|. ...++
T Consensus 410 --~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD------------------------~fqIv 463 (499)
T KOG0281|consen 410 --NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD------------------------EFQII 463 (499)
T ss_pred --CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec------------------------ceEEE
Confidence 67899999999999999987633 33344566666666554 56788
Q ss_pred ccccCccceeccccccCCC
Q 001386 703 SVEAENKSEVEKPLFARPS 721 (1088)
Q Consensus 703 ~~~~d~~i~vw~~~~~~~~ 721 (1088)
+++.|.+|.+||.....+.
T Consensus 464 sssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 464 SSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred eccCCCeEEEEEcCCCCcc
Confidence 9999999999997644433
No 63
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.4e-30 Score=241.33 Aligned_cols=290 Identities=16% Similarity=0.210 Sum_probs=255.5
Q ss_pred eecccCCCCceeeeecC---CCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 328 QTLIEGSSSPMSMDFHP---VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~sp---dg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
.+-.||+.+|..++||| +|- +|++++.|+.=.+-+-+||.-+.+ +.||.+.|....+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~-flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l 67 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGY-FLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATL 67 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCce-EEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeec
Confidence 45579999999999985 774 899999999999999999998877 8899999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc-eeEEecc
Q 001386 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEG 483 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~-~~~~~~~ 483 (1088)
..+-.+-|+++.|-+.+|||.-+|..+..+ .|.--|.+++|+.|.+ +|++|+.++.++|+|++..+ +...+.+
T Consensus 68 ~~na~~aasaaadftakvw~a~tgdelhsf----~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~g 141 (334)
T KOG0278|consen 68 NKNATRAASAAADFTAKVWDAVTGDELHSF----EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISG 141 (334)
T ss_pred Cchhhhhhhhcccchhhhhhhhhhhhhhhh----hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcC
Confidence 999999999999999999999999877632 5888999999999999 79999999999999998754 5678899
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 563 (1088)
|.+.|..+.|... .+.+++.+.|++||+||.+++.....+.. ..+|.++.++++|++|.++.. +.|..||..
T Consensus 142 htg~Ir~v~wc~e--D~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~g-----ssV~Fwdak 213 (334)
T KOG0278|consen 142 HTGGIRTVLWCHE--DKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAYG-----SSVKFWDAK 213 (334)
T ss_pred CCCcceeEEEecc--CceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEecC-----ceeEEeccc
Confidence 9999999988643 36888889999999999999998877754 357899999999999988753 349999999
Q ss_pred CCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEE-eCCCCCCCCceEEEecCCCEEEEEeC
Q 001386 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-DAGGGLPENPRICFNKNGTLLAVIAN 642 (1088)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1088)
+...++.+.... .|.+..++|+...+++|++|..++.||..+|..+..+ .+| ..+|.|+.|+|+|...++|+.
T Consensus 214 sf~~lKs~k~P~----nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh--~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 214 SFGLLKSYKMPC----NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH--FGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred cccceeeccCcc----ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC--CCceEEEEECCCCceeeccCC
Confidence 999998887655 7899999999999999999999999999999999886 444 457999999999999999999
Q ss_pred CCcEEEEeCCCCCcc
Q 001386 643 ENRIKILETPESNSV 657 (1088)
Q Consensus 643 dg~i~iwd~~~~~~~ 657 (1088)
||+|++|....++..
T Consensus 288 DGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 288 DGTIRLWQTTPGKTY 302 (334)
T ss_pred CceEEEEEecCCCch
Confidence 999999998866543
No 64
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=2.4e-30 Score=257.40 Aligned_cols=298 Identities=16% Similarity=0.223 Sum_probs=258.4
Q ss_pred CCCchhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCe
Q 001386 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1088)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V 399 (1088)
+.+|..+...|..|.++|..+.|-++.. .|++|+.|..|++|++..++.-.. ..+.|..++|
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~-----------------~tLaGs~g~i 222 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSELI-----------------STLAGSLGNI 222 (459)
T ss_pred cccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhhh-----------------hhhhccCCCc
Confidence 6678899999999999999999999966 489999999999999988762221 1277888999
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001386 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1088)
Q Consensus 400 ~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~ 479 (1088)
+.+.|.++++.+++++.|+.+++|++...+... ++.||+..|+++.|..... .+++|+.|.+|+.||+..+.|.+
T Consensus 223 t~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 223 TSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred ceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheec
Confidence 999999999999999999999999999986555 7889999999999998776 59999999999999999999988
Q ss_pred EeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001386 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1088)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 559 (1088)
++. ....+..++.. +..+++|-.|+.|++||.++.........++ .|+++..+++|..+.+++. +..+.+
T Consensus 298 t~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~v 367 (459)
T KOG0288|consen 298 TVL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKV 367 (459)
T ss_pred ccc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceee
Confidence 765 33445555542 3578999999999999999999888887776 9999999999999999975 556999
Q ss_pred EeCCCCceeEEEecccc-ccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEE
Q 001386 560 WNESEGAIKRTYQGLQL-QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1088)
Q Consensus 560 wd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1088)
.|+++.+..+.+..... .....+.+.|+|++.|+++||.||.|+||++.++++...+......+.|++++|+|.|..++
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 99999998888765431 12347889999999999999999999999999999999998776666799999999999999
Q ss_pred EEeCCCcEEEEe
Q 001386 639 VIANENRIKILE 650 (1088)
Q Consensus 639 ~~~~dg~i~iwd 650 (1088)
+++.++.+.+|.
T Consensus 448 sadk~~~v~lW~ 459 (459)
T KOG0288|consen 448 SADKQKAVTLWT 459 (459)
T ss_pred cccCCcceEecC
Confidence 999999999983
No 65
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.2e-29 Score=255.56 Aligned_cols=286 Identities=19% Similarity=0.229 Sum_probs=243.9
Q ss_pred cccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCC
Q 001386 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1088)
Q Consensus 330 l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~ 409 (1088)
...|. .|.+++|||...+=+|+.+. -.+.||+..+...+++ +......|.++.|-.||+
T Consensus 23 ~ke~~-~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~ 81 (487)
T KOG0310|consen 23 HKEHN-SVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGR 81 (487)
T ss_pred ccccC-cceeEecCCCCCCceEEecc-cEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCe
Confidence 34565 99999999965543444433 7899999988877654 333567899999999999
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEE
Q 001386 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~ 489 (1088)
+||+|...|.|+|+|+++...++ .+.+|+.+|..+.|+|++.. .+++|++|+.+++||+.+......+.+|+..|.
T Consensus 82 LlaaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR 157 (487)
T KOG0310|consen 82 LLAAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVR 157 (487)
T ss_pred EEEccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeE
Confidence 99999999999999977754455 68899999999999999887 899999999999999999998779999999999
Q ss_pred EEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCce-e
Q 001386 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-K 568 (1088)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~-~ 568 (1088)
+.+++|. ++.+++||+.||.|++||.+.......-..|+.+|.++.+-|.|..+++++. +.+++||+.+|.. +
T Consensus 158 ~g~~~~~-~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-----n~vkVWDl~~G~qll 231 (487)
T KOG0310|consen 158 CGDISPA-NDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-----NSVKVWDLTTGGQLL 231 (487)
T ss_pred eeccccC-CCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-----CeEEEEEecCCceeh
Confidence 9999876 5579999999999999999998766666678899999999999999999874 3499999996554 4
Q ss_pred EEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEE
Q 001386 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1088)
Q Consensus 569 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1088)
..+..|. ..|+|+++..++..|++++-|+.+++||+.+.+.+..+...+ +|.+++.+|+++.++.|..+|.+.+
T Consensus 232 ~~~~~H~---KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~---pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 232 TSMFNHN---KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG---PVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred hhhhccc---ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc---ceeeEEecCCCceEEEecccceeee
Confidence 4444466 899999999999999999999999999999999999887654 4899999999999999999999887
Q ss_pred EeCC
Q 001386 649 LETP 652 (1088)
Q Consensus 649 wd~~ 652 (1088)
-+..
T Consensus 306 rr~~ 309 (487)
T KOG0310|consen 306 RRRE 309 (487)
T ss_pred ehhh
Confidence 6443
No 66
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=2.5e-28 Score=265.28 Aligned_cols=285 Identities=23% Similarity=0.343 Sum_probs=252.5
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+.+|..+|.+++|+|++++|++++.+|.|++|++.+++... .+..|...+..+.|+++++ .+++++.|+.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 56799999999999999999999999999999999876433 5778999999999999998 799999999999999
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCC
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
+.+++.+..+..|...+.++.+.+. +.++++++.||.|++||+++.+....+..+...+.+++|+|++.++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 155 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-- 155 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC--
Confidence 9999889999999999999999654 568888888999999999988888888888889999999999998888763
Q ss_pred CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEe
Q 001386 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1088)
++.|.+||..+++.+..+..+. ..+.++.|+|+++.+++++.++.|++||+.+++.+..+..+.. .+.+++|+
T Consensus 156 --~~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~ 228 (289)
T cd00200 156 --DGTIKLWDLRTGKCVATLTGHT---GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN--GVNSVAFS 228 (289)
T ss_pred --CCcEEEEEccccccceeEecCc---cccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC--ceEEEEEc
Confidence 4569999999998888888776 7899999999999999999999999999999888888755433 68999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccce
Q 001386 632 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 711 (1088)
Q Consensus 632 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 711 (1088)
|++.++++++.+|.+++|+..+++....+..+...+.+++++ +++..+++++.|+.++
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~----------------------~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS----------------------PDGKRLASGSADGTIR 286 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEEC----------------------CCCCEEEEecCCCeEE
Confidence 998888888889999999999888888888888888888887 5677889999999999
Q ss_pred ecc
Q 001386 712 VEK 714 (1088)
Q Consensus 712 vw~ 714 (1088)
+|+
T Consensus 287 iw~ 289 (289)
T cd00200 287 IWD 289 (289)
T ss_pred ecC
Confidence 996
No 67
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.6e-28 Score=234.75 Aligned_cols=317 Identities=16% Similarity=0.200 Sum_probs=244.3
Q ss_pred chhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCccee-eeceeeeeeccccccceeeeecCCCCCeEE
Q 001386 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF-IRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1088)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 401 (1088)
+.-....|..|++.+.+.+|||||. ++|+|+.|..|+|.|++..-... ...+..-+. ...++.- ..+-+|...|++
T Consensus 101 ~~yEt~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~-qa~hPvI-RTlYDH~devn~ 177 (430)
T KOG0640|consen 101 SEYETKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDT-QARHPVI-RTLYDHVDEVND 177 (430)
T ss_pred cccceEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCc-ccCCceE-eehhhccCcccc
Confidence 3444567889999999999999998 89999999999999997311000 000000000 0011111 137789999999
Q ss_pred EEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe
Q 001386 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1088)
Q Consensus 402 l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~ 481 (1088)
+.|+|-...|++|+.|++|+++|+......+.++.+ ....+|.++.|.|.|. +++.|..-.++++||+.+-+|-..-
T Consensus 178 l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~Qcfvsa 254 (430)
T KOG0640|consen 178 LDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSA 254 (430)
T ss_pred eeecchhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeec
Confidence 999999999999999999999999865544433333 3456899999999999 8888998899999999998876443
Q ss_pred ---ccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecC-CC-CceEEEEEccCCCEEEEEeeCCCCcee
Q 001386 482 ---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PG-LGCTRMAYSANGRRLFSCGTSKEGESF 556 (1088)
Q Consensus 482 ---~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~-~~v~~~~~s~~g~~l~~~~~~~~~~~~ 556 (1088)
.+|.+.|+++.+ ++.+.+.++++.||.|++||--+.+++.++.. |+ ..|.+..|+.+|+++++.+. +..
T Consensus 255 nPd~qht~ai~~V~Y--s~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~ 328 (430)
T KOG0640|consen 255 NPDDQHTGAITQVRY--SSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DST 328 (430)
T ss_pred CcccccccceeEEEe--cCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----cce
Confidence 468999999988 55778999999999999999888887766543 43 37899999999999999875 667
Q ss_pred EEEEeCCCCceeEEEeccccccc--cEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecC
Q 001386 557 LVEWNESEGAIKRTYQGLQLQHN--SVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1088)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1088)
+++|.+.+++.+..+.|....+. --+...|+....+++.-. ..+.++-||.+++..+..+.. ++...+..+.-||.
T Consensus 329 vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~ 407 (430)
T KOG0640|consen 329 VKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPV 407 (430)
T ss_pred eeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCC
Confidence 99999999999999987631111 123455777777877754 357799999999887766654 34457899999999
Q ss_pred CCEEEEEeCCCcEEEEeCC
Q 001386 634 GTLLAVIANENRIKILETP 652 (1088)
Q Consensus 634 ~~~l~~~~~dg~i~iwd~~ 652 (1088)
+.-+++++.|..+++|--.
T Consensus 408 ~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 408 EPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred CCceeeecccceeeeeeec
Confidence 9999999999999999643
No 68
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=9.2e-28 Score=293.80 Aligned_cols=322 Identities=14% Similarity=0.178 Sum_probs=247.9
Q ss_pred cCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCC----Ccc
Q 001386 356 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDA 431 (1088)
Q Consensus 356 dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~----~~~ 431 (1088)
+|.+++|+..+....... ....+..|.+.|.+++|+|+|++||+|+.|+.|+|||+.+. ...
T Consensus 457 ~gl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADL--------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEee--------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 577888888765443211 11114569999999999999999999999999999998642 111
Q ss_pred c-ceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCe
Q 001386 432 R-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK 510 (1088)
Q Consensus 432 ~-~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 510 (1088)
. ....+. +...|.+++|++.... ++++++.||+|++||+.+++.+..+.+|...|++++|++. ++.+|++|+.||.
T Consensus 523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 112233 3467999999886433 7999999999999999999999999999999999999753 5579999999999
Q ss_pred EEEEECCCCCceEEecCCCCceEEEEEc-cCCCEEEEEeeCCCCceeEEEEeCCCCc-eeEEEeccccccccEEEEEEeC
Q 001386 511 IKAWLYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDT 588 (1088)
Q Consensus 511 i~iwd~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~ 588 (1088)
|++||+++......+..+ ..+.++.|+ ++|.++++++. ++.|++||++++. .+..+.+|. ..|.++.|.
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~---~~V~~v~f~- 670 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHS---KTVSYVRFV- 670 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCC---CCEEEEEEe-
Confidence 999999988777766644 578899995 57999999875 5569999998765 466677777 889999997
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC------eeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCccccccc
Q 001386 589 AKDQILAAGDDHVIKIWDMNKV------QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 662 (1088)
Q Consensus 589 ~~~~l~~~s~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 662 (1088)
++.++++++.|++|++||+..+ .++..+..|.. .+.+++|+|++++|++|+.|+.|++|+............
T Consensus 671 ~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~--~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~ 748 (793)
T PLN00181 671 DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN--VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKF 748 (793)
T ss_pred CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC--CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEec
Confidence 6789999999999999999743 56667766543 578999999999999999999999999765432211110
Q ss_pred c-cCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEE
Q 001386 663 L-SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT 741 (1088)
Q Consensus 663 ~-~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 741 (1088)
. ...+ .. .....+...|.+++
T Consensus 749 ~~~~~~--------------------------------------------------------~~--~~~~~~~~~V~~v~ 770 (793)
T PLN00181 749 KTIDPV--------------------------------------------------------SG--LEVDDASQFISSVC 770 (793)
T ss_pred ccCCcc--------------------------------------------------------cc--cccCCCCcEEEEEE
Confidence 0 0000 00 00012456799999
Q ss_pred EecCCceEEEeccccceEEEEc
Q 001386 742 YNNGGQAIFALASNGVHLMWRW 763 (1088)
Q Consensus 742 ~s~~g~~l~~~~~dg~v~iw~~ 763 (1088)
|++++..+++++.+|.|++|++
T Consensus 771 ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 771 WRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCeEEEecCCCcEEEEec
Confidence 9999999999999999999985
No 69
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=3.1e-28 Score=227.86 Aligned_cols=279 Identities=16% Similarity=0.243 Sum_probs=242.1
Q ss_pred eecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-
Q 001386 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 406 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~- 406 (1088)
+.+.+|...|.+|+|+.+|. -||+|+.|+++.+|++..++.+... ...+|.+.|..++|+|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~~-----------------~~~gh~~svdql~w~~~ 75 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKEL-----------------VYRGHTDSVDQLCWDPK 75 (313)
T ss_pred HHhhhhhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhhh-----------------cccCCCcchhhheeCCC
Confidence 56789999999999999999 5999999999999999988655432 2678999999999998
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCc
Q 001386 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1088)
Q Consensus 407 dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1088)
...++|+++.|.+|++||+..+++.... ... +.=..+.|+|+|+ +++.++.|..|.+.|.++-+.....+ ...
T Consensus 76 ~~d~~atas~dk~ir~wd~r~~k~~~~i---~~~-~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~ 148 (313)
T KOG1407|consen 76 HPDLFATASGDKTIRIWDIRSGKCTARI---ETK-GENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKF 148 (313)
T ss_pred CCcceEEecCCceEEEEEeccCcEEEEe---ecc-CcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccc
Confidence 7789999999999999999999876633 222 3334689999999 79999999999999999888776554 445
Q ss_pred cEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCc
Q 001386 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1088)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1088)
.+..++|+. ++.+++.....|+|.|-.+...+.+..+..|...+.|+.|+|+|+++|+|+. +..+.+||+..--
T Consensus 149 e~ne~~w~~--~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELi 222 (313)
T KOG1407|consen 149 EVNEISWNN--SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELI 222 (313)
T ss_pred eeeeeeecC--CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhh
Confidence 677788863 4457777777899999999999999999999999999999999999999986 5669999999999
Q ss_pred eeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCC
Q 001386 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1088)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1088)
+++.+..+. .+|+.+.|+-+|++|++|++|..|-|=++++|..+..++..+. ...++|+|...+||.+++|
T Consensus 223 C~R~isRld---wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~---t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 223 CERCISRLD---WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGP---TFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred hheeecccc---CceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCC---ceeEEecCCCceeeEEecC
Confidence 999999888 9999999999999999999999999999999999999987654 6899999999999998876
No 70
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.4e-27 Score=216.19 Aligned_cols=311 Identities=17% Similarity=0.212 Sum_probs=238.7
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
.++.+|+... .|.+|+|+|.|. +.|+|+...+.+|.....-..++... ..........-..-+.|.+.|.|.+|
T Consensus 24 ~~i~~l~dsq-airav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~h----ea~~~pp~v~~kr~khhkgsiyc~~w 97 (350)
T KOG0641|consen 24 EAINILEDSQ-AIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAH----EAAKQPPSVLCKRNKHHKGSIYCTAW 97 (350)
T ss_pred EEEEEecchh-heeeEEecCCCc-eEEeccCCceEEEEccccccCccccc----ccccCCCeEEeeeccccCccEEEEEe
Confidence 4566666554 999999999999 89999999999987665432221100 00000001111124569999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEcc--CCCcccceeEeccCCCCEEEEEecCC---CCcEEEEEEe-CCCcEEEEeCCCCcee
Q 001386 405 SPDGSLLGVAYSKHIVQLYAYH--GGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCG-DDKTIKVWDAVTGSRT 478 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~~--~~~~~~~~~~~~~h~~~v~~~~~s~d---~~~l~l~s~s-~d~~i~vwd~~~~~~~ 478 (1088)
||+|.+||+|+.|.+|++.-.+ +......-.++.-|.+.|..++|..+ +.. +|++++ .|..|++=|..+|+..
T Consensus 98 s~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~ 176 (350)
T KOG0641|consen 98 SPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGF 176 (350)
T ss_pred cCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCcc
Confidence 9999999999999999987554 33334444578889999999999654 222 566655 4778888899999999
Q ss_pred EEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCC-------CCceEEEEEccCCCEEEEEeeCC
Q 001386 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
+.+.+|.+.|.++.- -++.++++|+.|.+|++||++-..++..+... ...|.++++.|.|++|+++..
T Consensus 177 ~a~sghtghilalys---wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~-- 251 (350)
T KOG0641|consen 177 HALSGHTGHILALYS---WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA-- 251 (350)
T ss_pred eeecCCcccEEEEEE---ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC--
Confidence 999999999988752 26679999999999999999987776655432 246899999999999999875
Q ss_pred CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC--eeeEEEeCCCCCCCCceEE
Q 001386 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRIC 629 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~ 629 (1088)
+....+||++.++.++.+..|. ..|.++.|+|...++++++.|..|++-|++.. ..+..+-...+...+..+.
T Consensus 252 --dssc~lydirg~r~iq~f~phs---adir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~r 326 (350)
T KOG0641|consen 252 --DSSCMLYDIRGGRMIQRFHPHS---ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCR 326 (350)
T ss_pred --CCceEEEEeeCCceeeeeCCCc---cceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEE
Confidence 4458999999999999999988 99999999999999999999999999998642 1111111222334567889
Q ss_pred EecCCCEEEEEeCCCcEEEEeCC
Q 001386 630 FNKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
|+|..--+++.+.|.++.+|.+.
T Consensus 327 wh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 327 WHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ecCccceeeeccCcceEEEeccC
Confidence 99999889999999999999764
No 71
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=1.7e-28 Score=275.01 Aligned_cols=307 Identities=19% Similarity=0.245 Sum_probs=251.5
Q ss_pred cCCCCceeeeecCCCCeEEEEEc--ccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCC
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~ 409 (1088)
++...|.++..+|||. .+|+|+ .|+.++||+.+.--.-. ..++.. .+-.......|.+.|+|+.|+|||+
T Consensus 11 H~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~~----~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~ 82 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDEK----EEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGS 82 (942)
T ss_pred cCCeeEEEEEecCCce-eEecCCccccccceeeccccccchh----hhhhcc---cchhheeeccccCceeEEEECCCCC
Confidence 4455789999999999 589999 89999999976421000 011111 1112223677999999999999999
Q ss_pred EEEEEeCCCEEEEEEccC---C------------CcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001386 410 LLGVAYSKHIVQLYAYHG---G------------SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~~---~------------~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~ 474 (1088)
+||+|++|+.|.||+... + +..+....+.+|.+.|..++|+|++. ++++++.|++|.|||..+
T Consensus 83 ~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~t 160 (942)
T KOG0973|consen 83 YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKT 160 (942)
T ss_pred eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEcccc
Confidence 999999999999999883 1 11234557889999999999999999 899999999999999999
Q ss_pred CceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCC------ceEEEEEccCCCEEEEEe
Q 001386 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL------GCTRMAYSANGRRLFSCG 548 (1088)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~~~~s~~g~~l~~~~ 548 (1088)
.+++..+.+|.+.|..+.| +|-|++|++-+.|++|++|+...-.....+..+-. -+..+.|||||++|++..
T Consensus 161 F~~~~vl~~H~s~VKGvs~--DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 161 FELLKVLRGHQSLVKGVSW--DPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred ceeeeeeecccccccceEE--CCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 9999999999999999999 56779999999999999999776555555544322 467899999999999988
Q ss_pred eCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCC-----CC------------EEEEEeCCCcEEEEEcCCCe
Q 001386 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KD------------QILAAGDDHVIKIWDMNKVQ 611 (1088)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~------------~l~~~s~dg~i~iwd~~~~~ 611 (1088)
.-+.+...+.|.+-.+.+.-..+-||. .++.++.|+|. .+ .+++|+.|++|.||.....+
T Consensus 239 A~n~~~~~~~IieR~tWk~~~~LvGH~---~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 239 AVNGGKSTIAIIERGTWKVDKDLVGHS---APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred hccCCcceeEEEecCCceeeeeeecCC---CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence 777778889999999999899999999 89999999972 11 46779999999999998888
Q ss_pred eeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 001386 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
++..+..-.. ..|..++|+|||..|.+++.||+|.++.+...
T Consensus 316 Pl~vi~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 316 PLFVIHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred chhhhhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 8776643332 36899999999999999999999999998854
No 72
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.4e-29 Score=241.31 Aligned_cols=290 Identities=18% Similarity=0.242 Sum_probs=239.3
Q ss_pred ccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCE
Q 001386 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 812 (1088)
Q Consensus 733 ~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 812 (1088)
....+.|..|||||+++++++-||.+.+|++..++...... |..... ++. +...|.|+.||.|...
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLk-----YQAqd~--fMM-------md~aVlci~FSRDsEM 277 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLK-----YQAQDN--FMM-------MDDAVLCISFSRDSEM 277 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhh-----hhhhcc--eee-------cccceEEEeecccHHH
Confidence 44567889999999999999999999999998776521100 111111 121 6789999999999999
Q ss_pred EEEEe-CCcEEEEEcCCceeEEEec-CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEE
Q 001386 813 LFSAS-GGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 890 (1088)
Q Consensus 813 l~~~~-dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~ 890 (1088)
+|+|+ ||.|++|.+.+|.+++.|. .|...|+|+.||. |+..+.+++.|.+++|.-+.+|+++..++||++-|+...|
T Consensus 278 lAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~f 356 (508)
T KOG0275|consen 278 LASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATF 356 (508)
T ss_pred hhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEE
Confidence 99998 9999999999999999997 8999999999999 8889999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCC--CEEEEEeCCeEEEEEcCcceeeee
Q 001386 891 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ--TRFLLVHETHLAIYEAEELTCLKQ 968 (1088)
Q Consensus 891 s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg--~~l~~~~d~~i~vwd~~~~~~~~~ 968 (1088)
++||.++++++.||+|++|+.++.+ |+..+.... ...+|.++-.-|.+ .++++-..+++++-++. |+.+++
T Consensus 357 t~dG~~iisaSsDgtvkvW~~Ktte-----C~~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrs 429 (508)
T KOG0275|consen 357 TDDGHHIISASSDGTVKVWHGKTTE-----CLSTFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRS 429 (508)
T ss_pred cCCCCeEEEecCCccEEEecCcchh-----hhhhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEee
Confidence 9999999999999999999999965 333332211 11257777776654 34444567889999887 777777
Q ss_pred eecCC--CcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEe
Q 001386 969 WFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1046 (1088)
Q Consensus 969 ~~~~h--~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~ 1046 (1088)
+..|. .+...+.+.||.|.++...+.|+.++.+.+.+|.+...+..+.-. +..++-+| ..+++++=+
T Consensus 430 fsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkd----------vIGl~HHP-HqNllAsYs 498 (508)
T KOG0275|consen 430 FSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKD----------VIGLTHHP-HQNLLASYS 498 (508)
T ss_pred eccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccc----------ccccccCc-ccchhhhhc
Confidence 76554 566778899999999999999999999999999998888755433 34488899 779999999
Q ss_pred CCCcEEEEe
Q 001386 1047 TNGEVYVIE 1055 (1088)
Q Consensus 1047 ~dg~v~~w~ 1055 (1088)
.||.+++|.
T Consensus 499 EDgllKLWk 507 (508)
T KOG0275|consen 499 EDGLLKLWK 507 (508)
T ss_pred ccchhhhcC
Confidence 999999996
No 73
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1e-27 Score=224.99 Aligned_cols=287 Identities=10% Similarity=0.098 Sum_probs=238.5
Q ss_pred ecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCC
Q 001386 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1088)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg 408 (1088)
.|+||..+++.+.|+.+|. ||.+++.|.++.||-..+|+.+.+ +.||.+.|+|+..+.+.
T Consensus 5 ~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~s 64 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWDS 64 (327)
T ss_pred ccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCCc
Confidence 4789999999999999999 899999999999999999999987 88999999999999999
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEe-----CCCcEEEEeCC-------CCc
Q 001386 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAV-------TGS 476 (1088)
Q Consensus 409 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s-----~d~~i~vwd~~-------~~~ 476 (1088)
+++++|+.|.++++||+++|+++.. + ....+|..+.|+++|+ +++... ..+.|.++|++ ..+
T Consensus 65 ~~liTGSAD~t~kLWDv~tGk~la~---~-k~~~~Vk~~~F~~~gn--~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e 138 (327)
T KOG0643|consen 65 KHLITGSADQTAKLWDVETGKQLAT---W-KTNSPVKRVDFSFGGN--LILASTDKQMGYTCFVSVFDIRDDSSDIDSEE 138 (327)
T ss_pred ceeeeccccceeEEEEcCCCcEEEE---e-ecCCeeEEEeeccCCc--EEEEEehhhcCcceEEEEEEccCChhhhcccC
Confidence 9999999999999999999987763 3 3456899999999998 333332 23578999988 456
Q ss_pred eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceE-EecCCCCceEEEEEccCCCEEEEEeeCCCCce
Q 001386 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1088)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 555 (1088)
+...+..+...++.+.|.+ -+++|++|..||.|.+||++++.... ....|...|+.+.+++|..++++++. +.
T Consensus 139 p~~kI~t~~skit~a~Wg~--l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dt 212 (327)
T KOG0643|consen 139 PYLKIPTPDSKITSALWGP--LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DT 212 (327)
T ss_pred ceEEecCCccceeeeeecc--cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Cc
Confidence 6788888889999999855 45799999999999999999976544 55778889999999999999999986 45
Q ss_pred eEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCc--EE------------EEEcCCCeeeEEEeCCCC
Q 001386 556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV--IK------------IWDMNKVQLLTTIDAGGG 621 (1088)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~--i~------------iwd~~~~~~~~~~~~~~~ 621 (1088)
+-.+||..+-+.++++.... +|++.+++|....++.|+.... |. +|++-..+.+..+++|
T Consensus 213 takl~D~~tl~v~Kty~te~----PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH-- 286 (327)
T KOG0643|consen 213 TAKLVDVRTLEVLKTYTTER----PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH-- 286 (327)
T ss_pred cceeeeccceeeEEEeeecc----cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc--
Confidence 58999999999999998755 9999999998888887653322 22 2222222344455555
Q ss_pred CCCCceEEEecCCCEEEEEeCCCcEEEEeCCC
Q 001386 622 LPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1088)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 653 (1088)
..+|++++|+|+|+..++|+.||.|++.-...
T Consensus 287 FGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 287 FGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 45799999999999999999999999986653
No 74
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.1e-27 Score=225.68 Aligned_cols=286 Identities=16% Similarity=0.239 Sum_probs=236.9
Q ss_pred ccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCE
Q 001386 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1088)
Q Consensus 331 ~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~ 410 (1088)
..-.+.|.++.||++|. ++++++.|.+++|||..+|+++++ ...+.-.|..++|......
T Consensus 11 ~~~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~~ 70 (311)
T KOG1446|consen 11 RETNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSNT 70 (311)
T ss_pred ccCCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCce
Confidence 34456899999999999 577788999999999999998876 4446678888999887777
Q ss_pred EEEEeC--CCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccE
Q 001386 411 LGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1088)
Q Consensus 411 las~~~--dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v 488 (1088)
+..++. |.+|+.-++.+.+.++ -+.||...|+.++.+|-+. .+++++.|++|++||++..+|...+.....++
T Consensus 71 ~i~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi 145 (311)
T KOG1446|consen 71 VIHSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI 145 (311)
T ss_pred EEEccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCcc
Confidence 777766 7899999999998777 7889999999999999998 89999999999999999999988776555555
Q ss_pred EEEeeeeeCCceEEEEEecCCeEEEEECCCCC--ceEEec---CCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC
Q 001386 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1088)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 563 (1088)
. +| ++.|-++|++...+.|++||++.-. +-..+. ........+.|||||+.|+.+.. .+.+++.|.-
T Consensus 146 ~--Af--Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf 217 (311)
T KOG1446|consen 146 A--AF--DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAF 217 (311)
T ss_pred e--eE--CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEcc
Confidence 4 44 6677888888888899999998753 222333 33557889999999999999864 5669999999
Q ss_pred CCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCC
Q 001386 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1088)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1088)
+|..+.++.++......-...+|.||++++++|+.||+|.+|++++|..+..+... ....+.++.|+|.-.++++++
T Consensus 218 ~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~-- 294 (311)
T KOG1446|consen 218 DGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSAS-- 294 (311)
T ss_pred CCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecC--
Confidence 99999999988844444467889999999999999999999999999999999875 234688999999877776664
Q ss_pred CcEEEEeCC
Q 001386 644 NRIKILETP 652 (1088)
Q Consensus 644 g~i~iwd~~ 652 (1088)
..+.+|-..
T Consensus 295 s~l~fw~p~ 303 (311)
T KOG1446|consen 295 SNLVFWLPD 303 (311)
T ss_pred ceEEEEecc
Confidence 478888554
No 75
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=1.3e-27 Score=235.58 Aligned_cols=282 Identities=20% Similarity=0.373 Sum_probs=233.7
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC---C
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---G 408 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d---g 408 (1088)
.|.+.|.+|... ++ .+.+|+.||.++|||.. |+.... ..||.++|.+++|.-- .
T Consensus 103 ~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~-Gk~~~~-------------------~~Ght~~ik~v~~v~~n~~~ 159 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK-GKSIKT-------------------IVGHTGPIKSVAWVIKNSSS 159 (423)
T ss_pred cchhhhhhhccc--Cc-eEEEeecCCeeEEEecC-CceEEE-------------------EecCCcceeeeEEEecCCcc
Confidence 578899999998 45 68999999999999975 444433 7899999998888643 3
Q ss_pred CEEEEEeCCCEEEEEEccCCCcc-cceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCC--------------
Q 001386 409 SLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-------------- 473 (1088)
Q Consensus 409 ~~las~~~dg~i~vwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~-------------- 473 (1088)
..+++++.|.++++|.++.++.. .......||...|-+++..++|. .+++|+.|.+|+||+..
T Consensus 160 ~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r 237 (423)
T KOG0313|consen 160 CLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDELESSSNRR 237 (423)
T ss_pred ceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccccccccchhh
Confidence 36999999999999999887653 22223459999999999999999 89999999999999932
Q ss_pred -----------CCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCC
Q 001386 474 -----------TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR 542 (1088)
Q Consensus 474 -----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~ 542 (1088)
++.++-++.||..+|.++.|.. ...+++++.|.+|+.||+.+++....+.. +..+.++..+|..+
T Consensus 238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~ 313 (423)
T KOG0313|consen 238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSK 313 (423)
T ss_pred hhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccc
Confidence 1234567889999999999965 35899999999999999999888776654 34788999999999
Q ss_pred EEEEEeeCCCCceeEEEEeCCCCc---eeEEEeccccccccEEEEEEeCCCC-EEEEEeCCCcEEEEEcCCCe-eeEEEe
Q 001386 543 RLFSCGTSKEGESFLVEWNESEGA---IKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ-LLTTID 617 (1088)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~-~~~~~~ 617 (1088)
+|++++. +..+++||++++. ..+.+.+|. +.|.++.|+|... +|++++.|+++++||+++.+ ++..+.
T Consensus 314 Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~---nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~ 386 (423)
T KOG0313|consen 314 LLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHK---NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA 386 (423)
T ss_pred eeeecCC----CCceeecCCCCCCCceeEEeeecch---hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec
Confidence 9999986 5569999999764 456778888 8999999999765 56679999999999999877 888888
Q ss_pred CCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCC
Q 001386 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
.|.. .|.++.|+. +..+++|+.|.+|+|+...
T Consensus 387 ~h~D--Kvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 387 GHND--KVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred cCCc--eEEEEeccC-CceEEeccCcceEEEeccc
Confidence 7744 688999985 6699999999999998654
No 76
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.1e-28 Score=265.27 Aligned_cols=310 Identities=16% Similarity=0.209 Sum_probs=224.4
Q ss_pred hheeecc-cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEE
Q 001386 325 TVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1088)
Q Consensus 325 ~~~~~l~-~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1088)
...|.+. .|.+.||++.||+||+ |||+|+.|+.|+||.+...+...... -+. .|... . +. -.+.+..+.
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~---~~~-~~~~~-~---~~-~~s~~~p~~ 326 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAE---GDS-SCMYF-E---YN-ANSQIEPST 326 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcccc---ccc-chhhh-h---hh-hccccCccc
Confidence 3456666 8999999999999999 79999999999999998754422100 000 00000 0 00 000011111
Q ss_pred ECC-----CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001386 404 WSP-----DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1088)
Q Consensus 404 ~s~-----dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~ 478 (1088)
-++ .....-.+.....+.+-+..-.-.-+++..+.||.+.|..+.||.++ +|++++.|++|++|++...+|+
T Consensus 327 s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL 403 (712)
T KOG0283|consen 327 SSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECL 403 (712)
T ss_pred cccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCccee
Confidence 111 01111112222222221111111124455789999999999999876 6999999999999999999999
Q ss_pred EEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEE
Q 001386 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1088)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~ 558 (1088)
+.|. |...|+|++|+|..| +++++|+.||.||||++...+...-... ..-|++++|+|||+..++|+. .|.++
T Consensus 404 ~~F~-HndfVTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~----~G~C~ 476 (712)
T KOG0283|consen 404 KVFS-HNDFVTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTF----NGYCR 476 (712)
T ss_pred eEEe-cCCeeEEEEecccCC-CcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEe----ccEEE
Confidence 9998 999999999999854 7999999999999999876555444333 368999999999999999987 55699
Q ss_pred EEeCCCCceeEEEeccc-----cccccEEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec
Q 001386 559 EWNESEGAIKRTYQGLQ-----LQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1088)
Q Consensus 559 iwd~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1088)
+|+...-+......-+. .....|+.+.|.|.. ..+++.+.|..|||+|.++..++..+++......-....|+.
T Consensus 477 fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~ 556 (712)
T KOG0283|consen 477 FYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS 556 (712)
T ss_pred EEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc
Confidence 99988777665554332 112379999998754 458889999999999999999999998765554556789999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC
Q 001386 633 NGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 633 ~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
||++|+++++|..|++|+....
T Consensus 557 Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 557 DGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred CCCEEEEeecCceEEEEeCCCC
Confidence 9999999999999999998654
No 77
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=1.2e-28 Score=228.68 Aligned_cols=286 Identities=14% Similarity=0.182 Sum_probs=253.6
Q ss_pred ecCCCCCeEEEEECC---CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEE
Q 001386 392 VRDPGVSVNRVVWSP---DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~---dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~ 468 (1088)
..||..+|..++||| +|-+|++++.|+.-.+-+-++|.-+. ++.+|.+.|++.....+-. ..++++.|-+.+
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadftak 84 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTAK 84 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchhh
Confidence 678999999999996 89999999999988888888887666 7899999999999988877 789999999999
Q ss_pred EEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCC-ceEEecCCCCceEEEEEccCCCEEEEE
Q 001386 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1088)
Q Consensus 469 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~ 547 (1088)
+||.-+|..+++|. |..-|.+++| +.|.++|++|+.+..+|+||++..+ ....+.+|.+.|..+.|....+.+++.
T Consensus 85 vw~a~tgdelhsf~-hkhivk~~af--~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS 161 (334)
T KOG0278|consen 85 VWDAVTGDELHSFE-HKHIVKAVAF--SQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS 161 (334)
T ss_pred hhhhhhhhhhhhhh-hhheeeeEEe--cccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee
Confidence 99999999999997 8999999999 5577899999999999999998765 456788899999999999999999887
Q ss_pred eeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCce
Q 001386 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1088)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1088)
+. ++.|++||.++++.++++... .+|+++..+++|+++.++ ..+.|.+||..+..+++.+..... |.+
T Consensus 162 ad----d~tVRLWD~rTgt~v~sL~~~----s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~n---V~S 229 (334)
T KOG0278|consen 162 AD----DKTVRLWDHRTGTEVQSLEFN----SPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCN---VES 229 (334)
T ss_pred cc----CCceEEEEeccCcEEEEEecC----CCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccc---ccc
Confidence 54 556999999999999998864 489999999998766554 567899999999999998877654 789
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCCccccc-ccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCccccccc
Q 001386 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 706 (1088)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 706 (1088)
..++|+...+++|+.|..++.||..++..+... ++|.++|.|+.|+ |+|...++|+.
T Consensus 230 ASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFS----------------------PdGE~yAsGSE 287 (334)
T KOG0278|consen 230 ASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFS----------------------PDGELYASGSE 287 (334)
T ss_pred ccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEEC----------------------CCCceeeccCC
Confidence 999999999999999999999999999988885 8999999999998 67888999999
Q ss_pred CccceeccccccC
Q 001386 707 ENKSEVEKPLFAR 719 (1088)
Q Consensus 707 d~~i~vw~~~~~~ 719 (1088)
||+|++|.....+
T Consensus 288 DGTirlWQt~~~~ 300 (334)
T KOG0278|consen 288 DGTIRLWQTTPGK 300 (334)
T ss_pred CceEEEEEecCCC
Confidence 9999999976443
No 78
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=2.3e-27 Score=233.87 Aligned_cols=311 Identities=17% Similarity=0.269 Sum_probs=241.9
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCC-cEEEEEEeCCCcEEEEeC
Q 001386 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDA 472 (1088)
Q Consensus 394 ~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~-~l~l~s~s~d~~i~vwd~ 472 (1088)
-|...|.++... ++.|++|+.||.+++||.... ... .+.||.++|.+++|.-.+. .-.+++++.|.++++|-+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk-~~~---~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK-SIK---TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW 176 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCCc-eEE---EEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence 388899999887 899999999999999999863 333 6889999999888854332 115999999999999998
Q ss_pred CCCcee----EEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001386 473 VTGSRT----YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1088)
Q Consensus 473 ~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 548 (1088)
+.++.. +.-.||...|.++.. .++|..+++|+.|.+|++|+..+.. .-.+..... -+.++.
T Consensus 177 ~~~~~~~~~~~~~~GHk~~V~sVsv--~~sgtr~~SgS~D~~lkiWs~~~~~-~~~~E~~s~-------~rrk~~----- 241 (423)
T KOG0313|consen 177 NVGENKVKALKVCRGHKRSVDSVSV--DSSGTRFCSGSWDTMLKIWSVETDE-EDELESSSN-------RRRKKQ----- 241 (423)
T ss_pred cCchhhhhHHhHhcccccceeEEEe--cCCCCeEEeecccceeeecccCCCc-cccccccch-------hhhhhh-----
Confidence 877543 344599999999987 5577899999999999999833211 111111000 000000
Q ss_pred eCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceE
Q 001386 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1088)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1088)
-+-=...++.++.++.||. .+|.++.|++ ...+++++.|.+|+.||+.++.....+.... ..+++
T Consensus 242 --------~~~~~~~~r~P~vtl~GHt---~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i 306 (423)
T KOG0313|consen 242 --------KREKEGGTRTPLVTLEGHT---EPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCI 306 (423)
T ss_pred --------hhhhcccccCceEEecccc---cceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEe
Confidence 0111123466788899999 9999999988 6789999999999999999999988886543 47899
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCc
Q 001386 629 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708 (1088)
Q Consensus 629 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 708 (1088)
..+|..++|++|+.|..+++||.+++.
T Consensus 307 ~~~~~~~Ll~~gssdr~irl~DPR~~~----------------------------------------------------- 333 (423)
T KOG0313|consen 307 SYSPLSKLLASGSSDRHIRLWDPRTGD----------------------------------------------------- 333 (423)
T ss_pred ecccccceeeecCCCCceeecCCCCCC-----------------------------------------------------
Confidence 999999999999999988888766320
Q ss_pred cceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcce
Q 001386 709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFM 788 (1088)
Q Consensus 709 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1088)
T Consensus 334 -------------------------------------------------------------------------------- 333 (423)
T KOG0313|consen 334 -------------------------------------------------------------------------------- 333 (423)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 001386 789 VNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN 868 (1088)
Q Consensus 789 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd 868 (1088)
|. -..+++.+|.+.|.++.|+|.+...|++|+.|+++++||
T Consensus 334 ---------------------gs------------------~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWD 374 (423)
T KOG0313|consen 334 ---------------------GS------------------VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWD 374 (423)
T ss_pred ---------------------Cc------------------eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEE
Confidence 00 012345568888889999998888999999999999999
Q ss_pred cCCce-eeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 001386 869 ARSSE-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 913 (1088)
Q Consensus 869 ~~~~~-~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~ 913 (1088)
+++.+ .+..+.+|...|.++.|+ ++..+++||.|.+|+|+.-..
T Consensus 375 vRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 375 VRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred eccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEecccc
Confidence 99987 899999999999999998 567999999999999987543
No 79
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=8.4e-27 Score=218.90 Aligned_cols=286 Identities=13% Similarity=0.173 Sum_probs=238.5
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEE
Q 001386 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vw 470 (1088)
.+.||+.+++.+.++.+|.+|.+++.|.+..||-..+|+.+. ++.||++.|+|+...-+.+ .+++|+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 478999999999999999999999999999999998898776 7899999999999999999 89999999999999
Q ss_pred eCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEe-----cCCeEEEEECC-------CCCceEEecCCCCceEEEEEc
Q 001386 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-----VDGKIKAWLYD-------SLGARVDYDAPGLGCTRMAYS 538 (1088)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-----~dg~i~iwd~~-------~~~~~~~~~~~~~~v~~~~~s 538 (1088)
|+++|+++..++ ...+|..+.|++ +|.+++... ..+.|.++|++ ..++...+..+...++.+-|+
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 999999999997 567899998865 444555443 34569999998 344567777788899999999
Q ss_pred cCCCEEEEEeeCCCCceeEEEEeCCCCc-eeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEe
Q 001386 539 ANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1088)
Q Consensus 539 ~~g~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1088)
|-++.|++|.. ++.|.+||.++|. .+...+.|. ..|+.+++++|..++++++.|.+-++||..+-+.++++.
T Consensus 157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~---~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~ 229 (327)
T KOG0643|consen 157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHS---SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT 229 (327)
T ss_pred ccCCEEEEecC----CCcEEEEEcccCceeeechhhhc---cccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence 99999999976 4559999999984 445556666 799999999999999999999999999999999999987
Q ss_pred CCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeC--CC------------CCcccccccccCcceeeeecCCCcceeccc
Q 001386 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILET--PE------------SNSVDAAGVLSDNLRKLSVNPISTVTGAGI 683 (1088)
Q Consensus 618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~--~~------------~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~ 683 (1088)
... ++++.+++|....++.|+.....-|--. .. .+.+...++|-++|++++++
T Consensus 230 te~---PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh---------- 296 (327)
T KOG0643|consen 230 TER---PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH---------- 296 (327)
T ss_pred ecc---cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC----------
Confidence 653 5899999998778877765433333221 11 23455678899999999998
Q ss_pred cCCceeecCCCCCCCCcccccccCccceecccc
Q 001386 684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1088)
Q Consensus 684 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 716 (1088)
|+|+..++|+.||.|++...+
T Consensus 297 ------------PdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 297 ------------PDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ------------CCCcccccCCCCceEEEEEec
Confidence 678889999999999986543
No 80
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=2.3e-26 Score=257.59 Aligned_cols=289 Identities=12% Similarity=0.124 Sum_probs=225.3
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-CCCE
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSL 410 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~-dg~~ 410 (1088)
.|-..|....+++|+. .+++++.+..+..|+...|..+. +.............+.+|.+.|.+++|+| ++.+
T Consensus 18 ~~~~~i~~~~~~~d~~-~~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~ 90 (493)
T PTZ00421 18 RHFLNVTPSTALWDCS-NTIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQK 90 (493)
T ss_pred cceeccccccccCCCC-CcEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCE
Confidence 3455788888899977 35677777888899876664321 11111111122334789999999999999 8999
Q ss_pred EEEEeCCCEEEEEEccCCCc----ccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCc
Q 001386 411 LGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1088)
Q Consensus 411 las~~~dg~i~vwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1088)
||+|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++++.|++|+|||+.+++.+..+.+|..
T Consensus 91 LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~ 169 (493)
T PTZ00421 91 LFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSD 169 (493)
T ss_pred EEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCC
Confidence 99999999999999987532 1234478899999999999998644 799999999999999999999999999999
Q ss_pred cEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCc-eEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001386 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1088)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1088)
.|.+++|++ ++.+|++++.||.|++||++++.....+..|.+. ...+.|.+++..+++++.++..++.|.+||+++.
T Consensus 170 ~V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 170 QITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred ceEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence 999999955 6789999999999999999998888777777654 4567899999999888766556788999999875
Q ss_pred c-eeEEEeccccccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecC
Q 001386 566 A-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1088)
Q Consensus 566 ~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1088)
. .......+. ...+....|+++++.+++++ .|+.|++||+.+++.+....... ...+..++|.|.
T Consensus 248 ~~p~~~~~~d~--~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~g~~~~pk 314 (493)
T PTZ00421 248 ASPYSTVDLDQ--SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHKGLCMMPK 314 (493)
T ss_pred CCceeEeccCC--CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCcceEeccc
Confidence 4 333333222 24566678999999999887 59999999999998877765432 235678888884
No 81
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=4.5e-27 Score=263.73 Aligned_cols=304 Identities=17% Similarity=0.243 Sum_probs=238.8
Q ss_pred ccccEEEEEEecCCceEEEec--cccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCC
Q 001386 733 KANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 810 (1088)
Q Consensus 733 ~~~~i~~~~~s~~g~~l~~~~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 810 (1088)
+...|.++..+|+|..+++++ .||.+.+|+.+.-.. ....++..-...+.+ . ..|...|.|+.|+|||
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~------~~~~~~~~l~k~l~~--m--~~h~~sv~CVR~S~dG 81 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD------EKEEKNENLPKHLCT--M--DDHDGSVNCVRFSPDG 81 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc------hhhhhhcccchhhee--e--ccccCceeEEEECCCC
Confidence 345689999999999999999 799999998654221 111222211111111 1 2499999999999999
Q ss_pred CEEEEEe-CCcEEEEEcCC------------------ceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC
Q 001386 811 AYLFSAS-GGVISLYIVMT------------------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 871 (1088)
Q Consensus 811 ~~l~~~~-dg~i~iwd~~~------------------~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~ 871 (1088)
++||+|+ |+.|.||+... ++.+..+.+|...|..++|+| ++.+||+++.|++|.|||..+
T Consensus 82 ~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~t 160 (942)
T KOG0973|consen 82 SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKT 160 (942)
T ss_pred CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEcccc
Confidence 9999999 56789998762 346778899999999999999 899999999999999999999
Q ss_pred ceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-
Q 001386 872 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV- 950 (1088)
Q Consensus 872 ~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~- 950 (1088)
.+.+..+.+|.+.|..+.|.|-|+||||-+.|++|+||++.+....+ .+..+..+......+..+.|||||.+|++.
T Consensus 161 F~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k--~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 161 FELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK--SITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred ceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE--eeccchhhCCCcceeeecccCCCcCeecchh
Confidence 99999999999999999999999999999999999999987744322 233333333333468899999999999993
Q ss_pred -eC---CeEEEEEcCcceeeeeeecCCCcCEEEEEEee-----CCC------------EEEEEeCCCcEEEEEcCCCceE
Q 001386 951 -HE---THLAIYEAEELTCLKQWFPISSVPISQATFSC-----DCR------------MVFTSFVDGTLSIHEASNLEVQ 1009 (1088)
Q Consensus 951 -~d---~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~-----dg~------------~l~s~s~dg~v~vwd~~~~~~~ 1009 (1088)
.. ..+.|.+-.+.+.-.. +.||.+++.++.|.| ..+ .+|+|+.|++|.||.....+.+
T Consensus 239 A~n~~~~~~~IieR~tWk~~~~-LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl 317 (942)
T KOG0973|consen 239 AVNGGKSTIAIIERGTWKVDKD-LVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL 317 (942)
T ss_pred hccCCcceeEEEecCCceeeee-eecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence 32 3688888877776666 558999999999998 111 5789999999999998776665
Q ss_pred EEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 1010 CRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~ 1060 (1088)
..+. .+.. -..+.++|+| ||-.|++++.||+|.+..+.+.+
T Consensus 318 ~vi~---~lf~------~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 318 FVIH---NLFN------KSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred hhhh---hhhc------CceeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence 4333 1111 1347799999 89999999999999999997654
No 82
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=5.2e-27 Score=262.36 Aligned_cols=284 Identities=17% Similarity=0.287 Sum_probs=248.4
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEE
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 411 (1088)
.|...+.+..|. +| .+++|+.|++|++||..++..+.. -+.||.+.|.+++|..-+.+|
T Consensus 206 ~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~l 264 (537)
T KOG0274|consen 206 TDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKL 264 (537)
T ss_pred cCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEE
Confidence 356689999999 44 489999999999999999987753 178999999999999888999
Q ss_pred EEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEE
Q 001386 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1088)
Q Consensus 412 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 491 (1088)
++|+.|.++++||+.+|++.. .+.+|.+.|.++...+. .+++|+.|.+|++|++.++.++..+.+|.++|.++
T Consensus 265 vsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 265 VSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred EEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 999999999999999998887 78899999999987653 68889999999999999999999999999999999
Q ss_pred eeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC-ceeEE
Q 001386 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-AIKRT 570 (1088)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~ 570 (1088)
.. ++.++++|+.||+|++||+.+.+....+.+|...|.++.+.+. ..+++++. +..|++||+.++ +++.+
T Consensus 338 ~~----~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 338 QL----DEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHT 408 (537)
T ss_pred Ee----cCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhh
Confidence 87 3569999999999999999999999999999999999988776 88999887 456999999999 99999
Q ss_pred EeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEe
Q 001386 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1088)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 650 (1088)
+.+|. .-+..+. ..++++++++.|++|++||..+++++..+... +...|..+++. ...+++++.||.+++||
T Consensus 409 l~~h~---~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 409 LQGHT---SLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred hcCCc---ccccccc--cccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 99988 6665444 45789999999999999999999999999874 22345666654 46889999999999999
Q ss_pred CCCCCccccc
Q 001386 651 TPESNSVDAA 660 (1088)
Q Consensus 651 ~~~~~~~~~~ 660 (1088)
+.++.....+
T Consensus 481 l~~~~~~~~l 490 (537)
T KOG0274|consen 481 LRSGTLIRTL 490 (537)
T ss_pred cccCchhhhh
Confidence 9999877655
No 83
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.7e-26 Score=219.72 Aligned_cols=271 Identities=16% Similarity=0.190 Sum_probs=229.8
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeC--CCcEEE
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKV 469 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~--d~~i~v 469 (1088)
+......|.++.|+++|.+|++++.|.+++|||..+|+.++ ++..+...|..+.|..... .++.++. |.+|+.
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~--~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSN--TVIHSSTKEDDTIRY 84 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCc--eEEEccCCCCCceEE
Confidence 55577899999999999999999999999999999998777 5667777899999988887 4555555 889999
Q ss_pred EeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEee
Q 001386 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1088)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 549 (1088)
.++.+.+.++.|.||...|++++.+|.+ ..+++++.|++|++||++..++...+.....++ ++|.|.|-.+|++..
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANG 160 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecC
Confidence 9999999999999999999999997654 699999999999999999888887777666665 789999999999864
Q ss_pred CCCCceeEEEEeCCCC--ceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCC-c
Q 001386 550 SKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN-P 626 (1088)
Q Consensus 550 ~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~ 626 (1088)
...|.+||++.- .+..++.-........+.+.|+|||++++.++..+.+++.|.-+|..+.++..+.....+ .
T Consensus 161 ----~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 161 ----SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred ----CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 336999999853 344444443222467899999999999999999999999999999999998876543322 4
Q ss_pred eEEEecCCCEEEEEeCCCcEEEEeCCCCCccccccc-ccCcceeeeecCC
Q 001386 627 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPI 675 (1088)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~p~ 675 (1088)
..+|+||++++++|+.||+|.+|+++++..+..+.+ +...+.++.|+|.
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~ 286 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPR 286 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCc
Confidence 788999999999999999999999999999888888 5778888888754
No 84
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.1e-27 Score=219.40 Aligned_cols=286 Identities=17% Similarity=0.243 Sum_probs=228.5
Q ss_pred CceeeeecC--CCCeEEEEEcc-----cCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-C
Q 001386 336 SPMSMDFHP--VQHTLLLVGTN-----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-D 407 (1088)
Q Consensus 336 ~V~~v~~sp--dg~~lla~g~~-----dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~-d 407 (1088)
.=.+++||| +++..+|++.. .|++.|-++..++-+... .-+ .-+..+..++||+ .
T Consensus 10 ~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~--~s~---------------d~~D~LfdV~Wse~~ 72 (311)
T KOG0277|consen 10 HGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQEC--QSY---------------DTEDGLFDVAWSENH 72 (311)
T ss_pred ccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEE--Eee---------------ecccceeEeeecCCC
Confidence 346889999 44433333322 488999999755544321 111 2457899999999 4
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCcc
Q 001386 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1088)
Q Consensus 408 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1088)
...+++++.||++++||+... -.++..++.|...|.++.|++-.++ .++++|.|++|++||...+..+.++.+|...
T Consensus 73 e~~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~ 149 (311)
T KOG0277|consen 73 ENQVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSC 149 (311)
T ss_pred cceEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccE
Confidence 567888999999999995433 3566678999999999999998776 5777799999999999999999999999999
Q ss_pred EEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCE-EEEEeeCCCCceeEEEEeCCCC-
Q 001386 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR-LFSCGTSKEGESFLVEWNESEG- 565 (1088)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~~~~~~~~i~iwd~~~~- 565 (1088)
|....|+|. ....+++++.||++++||++.......+..|...+.++.|+.-... +++++. ++.|+.||++.-
T Consensus 150 Iy~a~~sp~-~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r 224 (311)
T KOG0277|consen 150 IYQAAFSPH-IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLR 224 (311)
T ss_pred EEEEecCCC-CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhcc
Confidence 999999987 4469999999999999999998888889999999999999986555 555543 667999999864
Q ss_pred ceeEEEeccccccccEEEEEEeCCC-CEEEEEeCCCcEEEEEcCC-CeeeEEEeCCCCCCCCceEEEec-CCCEEEEEeC
Q 001386 566 AIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNK-NGTLLAVIAN 642 (1088)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~ 642 (1088)
..+..+.+|. -.|+.+.|+|.. ..|++++.|-+++|||... ...+.+...|. ..+..+.|++ ++.++|..+.
T Consensus 225 ~pl~eL~gh~---~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~Ht--EFv~g~Dws~~~~~~vAs~gW 299 (311)
T KOG0277|consen 225 TPLFELNGHG---LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHT--EFVCGLDWSLFDPGQVASTGW 299 (311)
T ss_pred ccceeecCCc---eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccc--eEEeccccccccCceeeeccc
Confidence 4567777777 899999999975 5677899999999999884 34555555553 3577888888 6789999999
Q ss_pred CCcEEEEeC
Q 001386 643 ENRIKILET 651 (1088)
Q Consensus 643 dg~i~iwd~ 651 (1088)
|+.++||+-
T Consensus 300 De~l~Vw~p 308 (311)
T KOG0277|consen 300 DELLYVWNP 308 (311)
T ss_pred ccceeeecc
Confidence 999999984
No 85
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.7e-26 Score=216.17 Aligned_cols=253 Identities=16% Similarity=0.247 Sum_probs=214.5
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+.+|...|.+++|+.||.+||+|+.|+++.+|+++.++..+. ....+|.+.|-.++|.|.... .+++++.|++|++||
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~-~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE-LVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIWD 93 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh-hcccCCCcchhhheeCCCCCc-ceEEecCCceEEEEE
Confidence 667999999999999999999999999999999998854433 357899999999999998776 789999999999999
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCC
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
++.+++........+.+. ++| +++|.+++.++.|..|.+.|.++.+....... ...+..++|+.++.+++...
T Consensus 94 ~r~~k~~~~i~~~~eni~-i~w--sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~--- 166 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENIN-ITW--SPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTN--- 166 (313)
T ss_pred eccCcEEEEeeccCcceE-EEE--cCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEec---
Confidence 999999998876666665 344 56788999999999999999987665543322 23567788987777776653
Q ss_pred CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEe
Q 001386 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1088)
|.+.|.|.....-+.+..++.|. ....|+.|+|+|+++++|+.|..+.+||++..-+++.+....- +|..+.||
T Consensus 167 -GlG~v~ILsypsLkpv~si~AH~---snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw--pVRTlSFS 240 (313)
T KOG1407|consen 167 -GLGCVEILSYPSLKPVQSIKAHP---SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW--PVRTLSFS 240 (313)
T ss_pred -CCceEEEEeccccccccccccCC---cceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC--ceEEEEec
Confidence 36779998888889999999998 8889999999999999999999999999999888888876544 68999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCCcccc
Q 001386 632 KNGTLLAVIANENRIKILETPESNSVDA 659 (1088)
Q Consensus 632 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 659 (1088)
.||++||+++.|..|-|=++++|..+..
T Consensus 241 ~dg~~lASaSEDh~IDIA~vetGd~~~e 268 (313)
T KOG1407|consen 241 HDGRMLASASEDHFIDIAEVETGDRVWE 268 (313)
T ss_pred cCcceeeccCccceEEeEecccCCeEEE
Confidence 9999999999999999988887755443
No 86
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=3.5e-27 Score=225.56 Aligned_cols=306 Identities=13% Similarity=0.188 Sum_probs=236.1
Q ss_pred CCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcc
Q 001386 622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 701 (1088)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l 701 (1088)
...+.+.+|+|||.++|+|+.|..|+|+|++..-... .+. .+
T Consensus 112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks---~~~-----------------------------------em 153 (430)
T KOG0640|consen 112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKS---KPK-----------------------------------EM 153 (430)
T ss_pred ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc---chh-----------------------------------hh
Confidence 4468899999999999999999999999987321000 000 00
Q ss_pred cccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCC
Q 001386 702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQP 781 (1088)
Q Consensus 702 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 781 (1088)
..+..+.. ......+- .|...|+.+.|.|....|++++.|++++++|+......
T Consensus 154 ~~~~~qa~------------hPvIRTlY--DH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saK------------ 207 (430)
T KOG0640|consen 154 ISGDTQAR------------HPVIRTLY--DHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAK------------ 207 (430)
T ss_pred ccCCcccC------------CceEeehh--hccCcccceeecchhheEEeccCCCeEEEEecccHHHH------------
Confidence 00000000 00001111 27889999999999999999999999999998654320
Q ss_pred CCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEe---cCCCCCeEEEEEcCCCCcEEEE
Q 001386 782 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI---MPPSPTATSLAFNPHDNNVIAI 857 (1088)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~---~~~~~~i~~l~~sp~d~~~las 857 (1088)
.....+ ....+|.++.|+|.|.+|++|. ..++++||+++.++...- ..|.+.|+++.+++ .+++.++
T Consensus 208 -rA~K~~-------qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvT 278 (430)
T KOG0640|consen 208 -RAFKVF-------QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVT 278 (430)
T ss_pred -HHHHHh-------hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEE
Confidence 000011 1567899999999999999998 478999999999887654 36788999999999 8999999
Q ss_pred EeCCCeEEEEEcCCceeeeeec-cccC-CeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCe
Q 001386 858 GMDDSTILIYNARSSEVISKLE-GHSK-RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSE 935 (1088)
Q Consensus 858 g~~dg~i~lwd~~~~~~~~~l~-~h~~-~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 935 (1088)
|+.||.|+|||--+++++.++. +|.+ .|.+..|..+|+++.+.|.|.++++|.+.++.......=....+... .-
T Consensus 279 aSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~---~r 355 (430)
T KOG0640|consen 279 ASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQK---HR 355 (430)
T ss_pred eccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchh---hh
Confidence 9999999999999999998885 4654 78999999999999999999999999999965433222221122221 34
Q ss_pred EEEEEcCCCCEEEEE--eCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 001386 936 THIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1003 (1088)
Q Consensus 936 ~~~~fs~dg~~l~~~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~ 1003 (1088)
+...|+....+++.- ..+.+.-||.+++..+..+..+|++.+..+.-||.+.-+++++.|..+++|--
T Consensus 356 tqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 356 TQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 567788888888874 44679999999999999999999999999999999999999999999999963
No 87
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9e-27 Score=237.77 Aligned_cols=282 Identities=15% Similarity=0.211 Sum_probs=234.6
Q ss_pred ccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCE
Q 001386 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 812 (1088)
Q Consensus 733 ~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 812 (1088)
..+.|.+++|+|...+=++.++.-.+.+|+...... ... +. .....+.++.|..||++
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~------------------~k~--~s--rFk~~v~s~~fR~DG~L 82 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSV------------------RKT--FS--RFKDVVYSVDFRSDGRL 82 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhh------------------hhh--HH--hhccceeEEEeecCCeE
Confidence 346899999999887766666677788887543221 000 00 14678999999999999
Q ss_pred EEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEEC
Q 001386 813 LFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 891 (1088)
Q Consensus 813 l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s 891 (1088)
+|+|+ .|.|+|||+++...++.+.+|..++....|+|+++..+++|++|+.+++||+.+......+.+|++.|.|.+|+
T Consensus 83 laaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~ 162 (487)
T KOG0310|consen 83 LAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDIS 162 (487)
T ss_pred EEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccc
Confidence 99998 79999999888778889999999999999999999999999999999999999998877999999999999999
Q ss_pred CC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeee
Q 001386 892 DA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF 970 (1088)
Q Consensus 892 ~d-g~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~ 970 (1088)
|- +.+++|||.||+|++||+.... ......-.+ .+|..+.|-|.|..+|++..+.|+|||+.+|...-...
T Consensus 163 ~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 163 PANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhh
Confidence 95 5589999999999999998742 222222222 26899999999999999999999999999776655545
Q ss_pred cCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCc
Q 001386 971 PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGE 1050 (1088)
Q Consensus 971 ~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~ 1050 (1088)
..|...|+|+++..|+..|++|+-|+.|+|||+.+.+.+..+... . ..++++.+| |+..++.|..||.
T Consensus 235 ~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~----~-------pvLsiavs~-dd~t~viGmsnGl 302 (487)
T KOG0310|consen 235 FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP----G-------PVLSIAVSP-DDQTVVIGMSNGL 302 (487)
T ss_pred hcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc----c-------ceeeEEecC-CCceEEEecccce
Confidence 569999999999999999999999999999999999999887611 1 246788899 7799999999998
Q ss_pred EEEEeC
Q 001386 1051 VYVIEP 1056 (1088)
Q Consensus 1051 v~~w~l 1056 (1088)
+.+=+.
T Consensus 303 v~~rr~ 308 (487)
T KOG0310|consen 303 VSIRRR 308 (487)
T ss_pred eeeehh
Confidence 887744
No 88
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.5e-26 Score=247.29 Aligned_cols=279 Identities=18% Similarity=0.267 Sum_probs=241.0
Q ss_pred ceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeC
Q 001386 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 416 (1088)
Q Consensus 337 V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~ 416 (1088)
..-+.||..+ +||+|.. ..|++|+..+++.... ..-++..|+++.|+++|.+||+|..
T Consensus 180 ~nlldWss~n--~laValg-~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~ 237 (484)
T KOG0305|consen 180 LNLLDWSSAN--VLAVALG-QSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTS 237 (484)
T ss_pred hhHhhcccCC--eEEEEec-ceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeec
Confidence 4567788655 5777653 6899999999986543 2224789999999999999999999
Q ss_pred CCEEEEEEccCCCcccceeEecc-CCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE-eccCCccEEEEeee
Q 001386 417 KHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPH 494 (1088)
Q Consensus 417 dg~i~vwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~ 494 (1088)
+|.|.|||..+.+.++ .+.+ |...|.+++|. +. .+.+|+.|+.|..+|++..+.... +.+|...|..+.|
T Consensus 238 ~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkw- 309 (484)
T KOG0305|consen 238 DGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKW- 309 (484)
T ss_pred CCeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEE-
Confidence 9999999999887666 5667 99999999999 34 789999999999999998876655 8899999999999
Q ss_pred eeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEcc-CCCEEEEEeeCCCCceeEEEEeCCCCceeEEEec
Q 001386 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 573 (1088)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 573 (1088)
++|+.++++|+.|+.+.|||.........+..|...|..++|+| ....||+|+. ..+..|++||..+|+.+.....
T Consensus 310 -s~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 310 -SPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred -CCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEeccccc
Confidence 55778999999999999999988899999999999999999999 5567777765 5588899999999998887765
Q ss_pred cccccccEEEEEEeCCCCEEEE--EeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeC
Q 001386 574 LQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1088)
Q Consensus 574 ~~~~~~~v~~~~~~~~~~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1088)
. ..|..+.|++..+-+++ |..++.|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++
T Consensus 387 g----sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 387 G----SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred C----CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccc
Confidence 3 58999999999887777 55778999999999999999987755 6999999999999999999999999998
Q ss_pred CCC
Q 001386 652 PES 654 (1088)
Q Consensus 652 ~~~ 654 (1088)
-..
T Consensus 461 f~~ 463 (484)
T KOG0305|consen 461 FDE 463 (484)
T ss_pred cCC
Confidence 764
No 89
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=3e-26 Score=219.33 Aligned_cols=277 Identities=18% Similarity=0.236 Sum_probs=221.1
Q ss_pred CCCCceeeeecCCCCeEEEEEcccCcEEEEecCC-CcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEE
Q 001386 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1088)
Q Consensus 333 h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 411 (1088)
-.+.|.+++|||....+++.||-|++||+|+++. |.... .....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence 4568999999996666888999999999999987 33332 1245699999999999999999
Q ss_pred EEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEE
Q 001386 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1088)
Q Consensus 412 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 491 (1088)
++|+.|+.+++||+.+++.. .+..|.++|..+.|-+...+-.|+|||.|++|+.||.+...++.++. -...++++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 99999999999999998533 47789999999999887665589999999999999999999988886 45677777
Q ss_pred eeeeeCCceEEEEEecCCeEEEEECCCCCceEEec--CCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC--ce
Q 001386 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AI 567 (1088)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~--~~ 567 (1088)
.. --.+++.+..++.|.+|++++........ .-.-.+.|++...|....+.|+. ++.+.+..+..+ +.
T Consensus 163 Dv----~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 163 DV----LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKD 234 (347)
T ss_pred hc----cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccC
Confidence 54 22489999999999999997765433221 22336889999888888888876 444666655554 55
Q ss_pred eEEEeccccc------cccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEe
Q 001386 568 KRTYQGLQLQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1088)
Q Consensus 568 ~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1088)
-.+++.|... -..|++++|+|.-..|++++.||++.+||-+....+...+.+. .+|.+.+|+.+|.++|.+.
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~--qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHP--QPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCC--CccceeEecCCCCEEEEEe
Confidence 5667777621 2367889999999999999999999999998877777766554 3699999999999988765
Q ss_pred C
Q 001386 642 N 642 (1088)
Q Consensus 642 ~ 642 (1088)
.
T Consensus 313 g 313 (347)
T KOG0647|consen 313 G 313 (347)
T ss_pred e
Confidence 3
No 90
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=9.6e-27 Score=237.82 Aligned_cols=309 Identities=17% Similarity=0.215 Sum_probs=241.4
Q ss_pred cCCCchhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCC
Q 001386 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398 (1088)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~ 398 (1088)
+..+|..+-..|.+|+.-|.++++.|.|.+ +++|+.|.+|++||+........ .-+.+.......
T Consensus 152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~~--------------~fr~l~P~E~h~ 216 (641)
T KOG0772|consen 152 IKLIPGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASMR--------------SFRQLQPCETHQ 216 (641)
T ss_pred hhcCCccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccch--------------hhhccCcccccc
Confidence 445788888899999999999999999996 89999999999999986543221 111224445678
Q ss_pred eEEEEECCCCCEEEEEeCCCEEEEEEccCCCc---------ccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEE
Q 001386 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD---------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1088)
Q Consensus 399 V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~---------~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~v 469 (1088)
|.+++||+.|..|++.+.....+|+|-..-+. ++....-+||...++|.+|+|+.+. .+++++.||++++
T Consensus 217 i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRi 295 (641)
T KOG0772|consen 217 INSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRI 295 (641)
T ss_pred cceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEE
Confidence 99999999999999988888899998765332 3334456799999999999999988 7899999999999
Q ss_pred EeCCCCce-eEEec-----cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCce---EEecCCCC--ceEEEEEc
Q 001386 470 WDAVTGSR-TYSFE-----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGL--GCTRMAYS 538 (1088)
Q Consensus 470 wd~~~~~~-~~~~~-----~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~--~v~~~~~s 538 (1088)
||+..-+. +..++ +..-+++.++| +++|..|++|+.||.|.+|+....... ..-..|.. .|+|++||
T Consensus 296 Wdv~~~k~q~qVik~k~~~g~Rv~~tsC~~--nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS 373 (641)
T KOG0772|consen 296 WDVNNTKSQLQVIKTKPAGGKRVPVTSCAW--NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS 373 (641)
T ss_pred EecCCchhheeEEeeccCCCcccCceeeec--CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec
Confidence 99886543 33332 23456777777 668889999999999999998654432 23334444 89999999
Q ss_pred cCCCEEEEEeeCCCCceeEEEEeCCCC-ceeEEEeccccccccEEEEEEeCCCCEEEEEe------CCCcEEEEEcCCCe
Q 001386 539 ANGRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG------DDHVIKIWDMNKVQ 611 (1088)
Q Consensus 539 ~~g~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s------~dg~i~iwd~~~~~ 611 (1088)
+||++|++-+. +..+.+||++.. +++....+.. ...+-+.++|+|+.+.|++|+ ..|++.+||..+..
T Consensus 374 ~dg~~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 374 YDGNYLLSRGF----DDTLKVWDLRQFKKPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred cccchhhhccC----CCceeeeeccccccchhhhcCCC-ccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee
Confidence 99999998765 556999999865 4454444433 124567789999999999976 45789999999999
Q ss_pred eeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCC
Q 001386 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
.+..+... ...|..+.|+|.-+.|.+|+.||++++|=-.
T Consensus 449 ~v~ki~i~--~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 449 TVYKIDIS--TASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred eEEEecCC--CceEEEEeecchhhheeeecCCCceEEEECc
Confidence 99988766 3368889999998999999999999997433
No 91
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.8e-26 Score=232.16 Aligned_cols=293 Identities=14% Similarity=0.193 Sum_probs=235.2
Q ss_pred eeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeee----ccccccceeeeecCCCCCeEEE
Q 001386 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI----GACSMLFKTALVRDPGVSVNRV 402 (1088)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~----~~~~~~~~~~~~~~h~~~V~~l 402 (1088)
.+.+..|.-.|.||+++||++ +..+++.+++|.=|++.+|+.... +|.. +.-..+.+..- .+|...|.++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~ 208 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTL 208 (479)
T ss_pred ceeeccccCcceEEEeecccc-ceeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEE
Confidence 356678888999999999999 589999999999999999986532 1111 00111222221 4899999999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEec
Q 001386 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1088)
Q Consensus 403 ~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~ 482 (1088)
+.|+||+|||+|+.|..|.||+..+.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+++....+.++-
T Consensus 209 avS~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetly 283 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLY 283 (479)
T ss_pred EEcCCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHh
Confidence 999999999999999999999999998777 6889999999999987666 68999999999999999999999999
Q ss_pred cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001386 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 562 (1088)
+|...|.++.... -++.+..|+.|+++++|++ .......+.++.+.+.|++|-.+. .+++|+. ++.|.+|++
T Consensus 284 GHqd~v~~IdaL~--reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~~-HfvsGSd----nG~IaLWs~ 355 (479)
T KOG0299|consen 284 GHQDGVLGIDALS--RERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFINDE-HFVSGSD----NGSIALWSL 355 (479)
T ss_pred CCccceeeechhc--ccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEeccc-ceeeccC----CceEEEeee
Confidence 9999999987643 3356666779999999999 555667778888899999996654 5667764 566999999
Q ss_pred CCCceeEEEecc-ccc--------cccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC----eeeEEEeCCCCCCCCceEE
Q 001386 563 SEGAIKRTYQGL-QLQ--------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPENPRIC 629 (1088)
Q Consensus 563 ~~~~~~~~~~~~-~~~--------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~ 629 (1088)
...+++.+.... ... ...|++++..|..+.+++|+.+|.|++|-+.++ +++..+.. ...|++++
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~---~GfVNsl~ 432 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL---VGFVNSLA 432 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc---ccEEEEEE
Confidence 998887765432 111 127899999999999999999999999999887 44445543 33589999
Q ss_pred EecCCCEEEEEe
Q 001386 630 FNKNGTLLAVIA 641 (1088)
Q Consensus 630 ~s~~~~~l~~~~ 641 (1088)
|+++|+.+++|.
T Consensus 433 f~~sgk~ivagi 444 (479)
T KOG0299|consen 433 FSNSGKRIVAGI 444 (479)
T ss_pred EccCCCEEEEec
Confidence 999999776664
No 92
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=2.7e-26 Score=234.63 Aligned_cols=298 Identities=17% Similarity=0.246 Sum_probs=226.2
Q ss_pred cccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCC
Q 001386 732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 811 (1088)
Q Consensus 732 ~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 811 (1088)
+|+..|.++++.|.|-++++|+-|..|++||+..-.... +- +. .-.......|+++.+|+.|.
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~------~~--------fr---~l~P~E~h~i~sl~ys~Tg~ 227 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASM------RS--------FR---QLQPCETHQINSLQYSVTGD 227 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEecccccccc------hh--------hh---ccCcccccccceeeecCCCC
Confidence 488889999999999999999999999999987543311 10 00 01112566899999999998
Q ss_pred EEEEEe-CCcEEEEEcCCceeEEE------------ecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce-eeee
Q 001386 812 YLFSAS-GGVISLYIVMTFKTILT------------IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISK 877 (1088)
Q Consensus 812 ~l~~~~-dg~i~iwd~~~~~~~~~------------~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~-~~~~ 877 (1088)
.|++.+ ....+|+|-...+.... -++|...++|.+|+|.+...+++++.||+++|||+...+ .+..
T Consensus 228 ~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qV 307 (641)
T KOG0772|consen 228 QILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQV 307 (641)
T ss_pred eEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeE
Confidence 887776 67799999875544432 347888999999999888899999999999999997643 2233
Q ss_pred ec-----cccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-Ee
Q 001386 878 LE-----GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VH 951 (1088)
Q Consensus 878 l~-----~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~ 951 (1088)
++ +..-+++.++|++||+++|.|..||.|.+|+..+..... .+.....|.. ...|++++||+||++|++ +.
T Consensus 308 ik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p--~~~vk~AH~~-g~~Itsi~FS~dg~~LlSRg~ 384 (641)
T KOG0772|consen 308 IKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP--VMKVKDAHLP-GQDITSISFSYDGNYLLSRGF 384 (641)
T ss_pred EeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccccc--ceEeeeccCC-CCceeEEEeccccchhhhccC
Confidence 32 244578999999999999999999999999985533222 2223333332 236999999999999999 99
Q ss_pred CCeEEEEEcCcce-eeeeeecC-CCcCEEEEEEeeCCCEEEEEeC------CCcEEEEEcCCCceEEEeccccccCCCCc
Q 001386 952 ETHLAIYEAEELT-CLKQWFPI-SSVPISQATFSCDCRMVFTSFV------DGTLSIHEASNLEVQCRILSTAYLRPTTS 1023 (1088)
Q Consensus 952 d~~i~vwd~~~~~-~~~~~~~~-h~~~v~~l~fs~dg~~l~s~s~------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 1023 (1088)
|++++|||++..+ ++..+..- ...+-+.++||||.++|++|+. .|++.+||..+.+.+..+...
T Consensus 385 D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-------- 456 (641)
T KOG0772|consen 385 DDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-------- 456 (641)
T ss_pred CCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC--------
Confidence 9999999998654 44332211 2456678999999999999975 478999999999999888622
Q ss_pred cccccceEEEECCCCCCEEEEEeCCCcEEE-EeCCCCC
Q 001386 1024 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYV-IEPNEPG 1060 (1088)
Q Consensus 1024 ~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~-w~l~~~~ 1060 (1088)
......+.|+| .=+++++|+.||++++ ||...+.
T Consensus 457 --~aSvv~~~Whp-kLNQi~~gsgdG~~~vyYdp~~S~ 491 (641)
T KOG0772|consen 457 --TASVVRCLWHP-KLNQIFAGSGDGTAHVYYDPNESI 491 (641)
T ss_pred --CceEEEEeecc-hhhheeeecCCCceEEEECccccc
Confidence 13356789999 6688999999999987 5665544
No 93
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=5e-25 Score=247.11 Aligned_cols=237 Identities=10% Similarity=0.093 Sum_probs=185.7
Q ss_pred ecCCCCCeEEEEECCC-CCEEEEEeCCCEEEEEEccCCCc-c----cceeEeccCCCCEEEEEecCCCCcEEEEEEeCCC
Q 001386 392 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSD-A----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~d-g~~las~~~dg~i~vwd~~~~~~-~----~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~ 465 (1088)
+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++.. . .....+.+|...|.+++|+|++.. ++++++.|+
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~Dg 148 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDS 148 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCC
Confidence 7899999999999996 89999999999999999986532 1 123357899999999999999874 567999999
Q ss_pred cEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEE-----EEEccC
Q 001386 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR-----MAYSAN 540 (1088)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-----~~~s~~ 540 (1088)
+|++||+.+++.+..+. |...|.+++|+ ++|.+|++++.|+.|++||++++.....+..|.+.+.+ ..|+++
T Consensus 149 tIrIWDl~tg~~~~~i~-~~~~V~Slsws--pdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d 225 (568)
T PTZ00420 149 FVNIWDIENEKRAFQIN-MPKKLSSLKWN--IKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGD 225 (568)
T ss_pred eEEEEECCCCcEEEEEe-cCCcEEEEEEC--CCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCC
Confidence 99999999999887776 66789999995 46789999999999999999999888888888765432 345689
Q ss_pred CCEEEEEeeCCCCceeEEEEeCCC-CceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCC
Q 001386 541 GRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1088)
Q Consensus 541 g~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1088)
+.++++++.++..++.|++||++. +..+..+..+. +.+.+......+++.++++|+.|+.|++|++..+. +..+...
T Consensus 226 ~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~-~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~ 303 (568)
T PTZ00420 226 DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN-ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEY 303 (568)
T ss_pred CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC-CccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeeccc
Confidence 999999887665557899999985 55665554332 12333334445568889999999999999998764 3334333
Q ss_pred CCCCCCceEEEecCC
Q 001386 620 GGLPENPRICFNKNG 634 (1088)
Q Consensus 620 ~~~~~v~~v~~s~~~ 634 (1088)
....++.+++|.|..
T Consensus 304 ~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 304 KSCSPFRSFGFLPKQ 318 (568)
T ss_pred ccCCCccceEEcccc
Confidence 334467889999854
No 94
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=6.7e-24 Score=232.93 Aligned_cols=566 Identities=13% Similarity=0.139 Sum_probs=353.5
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCc-EEEEEEeCCCcEEEE
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ-ISVITCGDDKTIKVW 470 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~-l~l~s~s~d~~i~vw 470 (1088)
+.|-...-..-.||+|++++.....+ .|.||.+.+|.+++ .+.+|..++..+.+.|.... .++++++.||.|++|
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vw 87 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTGN-FVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVW 87 (792)
T ss_pred eccccceecccccccCCcEEEEeeCC-EEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEe
Confidence 34444444556799999999887554 59999999999888 68899999999999987764 478899999999999
Q ss_pred eCCCCceeEEeccCCccEEEEeee------------eeCCceEEEEEecC--CeEEEEECCCCCce-EEecCCCCceEEE
Q 001386 471 DAVTGSRTYSFEGHGAPVYSLCPH------------AKENIHFIFSISVD--GKIKAWLYDSLGAR-VDYDAPGLGCTRM 535 (1088)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~------------~~~~~~~l~s~~~d--g~i~iwd~~~~~~~-~~~~~~~~~v~~~ 535 (1088)
|...+..++++..+. ++..+.+. ...+-..+.+.+.+ ++++-+.+.+.... ..+......-.++
T Consensus 88 d~~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I 166 (792)
T KOG1963|consen 88 DWSDGELLKTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSI 166 (792)
T ss_pred cCCCcEEEEEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccE
Confidence 999999998886433 22222221 01111111111111 11221211111100 0000011113567
Q ss_pred EEccCCCEEEEEeeCCCCceeEEEEeCCCCceeE-EEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCC--Cee
Q 001386 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQL 612 (1088)
Q Consensus 536 ~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~~~ 612 (1088)
.+++.|.+.+.+. +..+.+|+..++.... ....+..|...+++.+++|++++++++..||.|.+|.--. +..
T Consensus 167 ~~~~~ge~~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~ 241 (792)
T KOG1963|consen 167 VDNNSGEFKGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS 241 (792)
T ss_pred EEcCCceEEEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence 8888888877765 3348899888755111 1111222335689999999999999999999999996433 222
Q ss_pred --eEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceee
Q 001386 613 --LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 690 (1088)
Q Consensus 613 --~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~ 690 (1088)
...+.- +...|.+++|+++|.+|.+|+..|.+.+|.+.+++ .+.++.
T Consensus 242 ~t~t~lHW--H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPR---------------------------- 290 (792)
T KOG1963|consen 242 ETCTLLHW--HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPR---------------------------- 290 (792)
T ss_pred ccceEEEe--cccccceeEEecCCceEeecccceEEEEEeecCCC-cccccc----------------------------
Confidence 223333 34479999999999999999999999999999875 222221
Q ss_pred cCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCC
Q 001386 691 NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTL 770 (1088)
Q Consensus 691 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~ 770 (1088)
-.+.|..+.+|||+........|..|.+.....-....
T Consensus 291 ------------------------------------------Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~ 328 (792)
T KOG1963|consen 291 ------------------------------------------LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKS 328 (792)
T ss_pred ------------------------------------------cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhh
Confidence 23567788888898888888888888887654322211
Q ss_pred CCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEec-CCCEEEEEeCCcEEEEEcCCceeEEEec-----CCC-----
Q 001386 771 STEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-NDAYLFSASGGVISLYIVMTFKTILTIM-----PPS----- 839 (1088)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~dg~i~iwd~~~~~~~~~~~-----~~~----- 839 (1088)
..+|....+... ......-.+.++++| -+..+..+..|.|.+||+.+.+.+..+. .+.
T Consensus 329 ----------tIsgi~~~~~~~-k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~ 397 (792)
T KOG1963|consen 329 ----------TISGIKPPTPST-KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNI 397 (792)
T ss_pred ----------hccCccCCCccc-cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCccee
Confidence 011110110000 011345567788888 4445555558999999998877665543 122
Q ss_pred -CCeEEEEEcCCCCcEEEEEe--------CCC--eEEEEEcCCce----eeeee-ccccCCeeEEEECC-CCC-EEEEEe
Q 001386 840 -PTATSLAFNPHDNNVIAIGM--------DDS--TILIYNARSSE----VISKL-EGHSKRVTGLVFSD-ALN-ILVSSG 901 (1088)
Q Consensus 840 -~~i~~l~~sp~d~~~lasg~--------~dg--~i~lwd~~~~~----~~~~l-~~h~~~V~~l~~s~-dg~-~las~s 901 (1088)
..+++++.+- .|.+++++- .|| .+++|-..... +...+ ..|...+...+|.+ ... .++++|
T Consensus 398 ~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~ 476 (792)
T KOG1963|consen 398 QVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTAS 476 (792)
T ss_pred EEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEec
Confidence 2468888888 699999863 333 67788765432 22222 34777666666543 333 799999
Q ss_pred CCCcEEEEEcCCCce-----eeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcC
Q 001386 902 GDAQIFVWDVDGWGI-----QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVP 976 (1088)
Q Consensus 902 ~Dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~ 976 (1088)
.||.++||-+...+. ....+.....-|. .+++.++|+.||..|+++.+++|.+||..+...+.........+
T Consensus 477 ~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k---~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~~~~ 553 (792)
T KOG1963|consen 477 VDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK---TPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSRNWP 553 (792)
T ss_pred cCCeEEEEEEecccccCcCccceEEeeeecccc---CcccchhhcCCCcEEEEecCCEEEEecCCChhhhhccccccccc
Confidence 999999999944221 1233333333333 37899999999999999999999999999843222222222334
Q ss_pred EEEEEEee----CCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCC------CccccccceE---EEECCCCCCEEE
Q 001386 977 ISQATFSC----DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT------TSCLHVYPHA---IAAHPLKPTQFA 1043 (1088)
Q Consensus 977 v~~l~fs~----dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~---~~~~p~d~~~l~ 1043 (1088)
+..+.|.. |+. ++....+.+.+|++.+..+............. .....+-... +++.| ..+.
T Consensus 554 ~~~~~~~~~~~~~~~--~~~~~~~~l~~WNll~~~l~w~~s~~~~i~~~~~~~~~~~~s~v~s~~f~vi~~~p---~~~~ 628 (792)
T KOG1963|consen 554 IAELLFTAQTQNDGA--LVHATQQRLSVWNLLSMSLIWNLSLSLRIEGVHVDRAADGDSSVGSTAFAVICWLP---ELLL 628 (792)
T ss_pred hHhHhhhcccccccc--eeeccCceEehHhhhhhheecchhhhhhhhcchhhhhhccccccCccceEEEeecc---cchh
Confidence 44444433 333 33446788999999999887733322211110 0011111222 33444 3333
Q ss_pred --------EEeCCCcEEEEeCCCCC
Q 001386 1044 --------VGLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 1044 --------~~~~dg~v~~w~l~~~~ 1060 (1088)
+.+.|+.+.+|+...++
T Consensus 629 ~~k~~~~~f~~~~~ril~F~~~~pk 653 (792)
T KOG1963|consen 629 VVKSIEQIFRGRDSRILIFSGDSPK 653 (792)
T ss_pred hhhhhhhhcccccceEEEecCCCch
Confidence 67888888888886655
No 95
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.6e-26 Score=219.12 Aligned_cols=297 Identities=16% Similarity=0.249 Sum_probs=246.1
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
.+++.|.||++.||.++...... ++.+++.|.+.+||.+++|.++.. +.||.+.|++++|
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsikf 198 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIKF 198 (481)
T ss_pred eehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEEe
Confidence 56677899999999999987666 899999999999999999999976 8899999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEc------cCC--------C----------------------cc-cceeEeccCCCCEEEE
Q 001386 405 SPDGSLLGVAYSKHIVQLYAY------HGG--------S----------------------DA-RQQLEIDAHVGNVNDL 447 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~------~~~--------~----------------------~~-~~~~~~~~h~~~v~~~ 447 (1088)
++.+.++++++.|++..||.. ... + .+ .++..+.+|.+.|.+.
T Consensus 199 h~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~ 278 (481)
T KOG0300|consen 199 HNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSAC 278 (481)
T ss_pred ccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEeh
Confidence 999999999999999999972 110 0 00 1245688999999999
Q ss_pred EecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecC
Q 001386 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA 527 (1088)
Q Consensus 448 ~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 527 (1088)
.|...|+ -+++++.|.+..+||+++|+.+..+.||....+.++-+| ..+++++.+.|.+.++||++..
T Consensus 279 dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp--tQrLVvTsSrDtTFRLWDFRea-------- 346 (481)
T KOG0300|consen 279 DWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP--TQRLVVTSSRDTTFRLWDFREA-------- 346 (481)
T ss_pred hhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCC--cceEEEEeccCceeEeccchhh--------
Confidence 9999999 689999999999999999999999999999999988866 4478999999999999987621
Q ss_pred CCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 001386 528 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1088)
Q Consensus 528 ~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1088)
| ..+..|+||. ..|+++.|..+ ..+++|++|.+|++||+
T Consensus 347 ----I---------------------------------~sV~VFQGHt---dtVTS~vF~~d-d~vVSgSDDrTvKvWdL 385 (481)
T KOG0300|consen 347 ----I---------------------------------QSVAVFQGHT---DTVTSVVFNTD-DRVVSGSDDRTVKVWDL 385 (481)
T ss_pred ----c---------------------------------ceeeeecccc---cceeEEEEecC-CceeecCCCceEEEeee
Confidence 1 1234577777 89999999876 57899999999999999
Q ss_pred CCC-eeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCccc----ccccccCcceeeeecCCCcceecc
Q 001386 608 NKV-QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD----AAGVLSDNLRKLSVNPISTVTGAG 682 (1088)
Q Consensus 608 ~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~p~~~~~~~~ 682 (1088)
++. .++.++.... .++.++.+..+..++.--++..|++||+...+... ..++|...|.|++|....
T Consensus 386 rNMRsplATIRtdS---~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eeh------ 456 (481)
T KOG0300|consen 386 RNMRSPLATIRTDS---PANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEH------ 456 (481)
T ss_pred ccccCcceeeecCC---ccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccC------
Confidence 875 4677776554 47889999989999999999999999999775443 346788889999987432
Q ss_pred ccCCceeecCCCCCCCCcccccccCccceeccccc
Q 001386 683 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1088)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 717 (1088)
| -.-+++++.|..+.-|++..
T Consensus 457 -------------p-~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 457 -------------P-ACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred -------------c-ccccccccccceeeeeEecc
Confidence 1 23467888888888888764
No 96
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1.4e-26 Score=230.82 Aligned_cols=285 Identities=17% Similarity=0.237 Sum_probs=239.7
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+..|.+.|..+.|-++...|++|+.|..|++|++..++. ....++.|-.++|+++.|.++++ .+++++.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~-~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS-ELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccchh-hhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 566999999999999999999999999999999988762 23336788889999999999999 788999999999999
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCC
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
+...+...++.||.+.|+++.|.-.. ..+++|+.|.+|+.||+....+..++.. ...+..++.+ ...++++..
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~-- 320 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHF-- 320 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeeccc--
Confidence 99999999999999999999985443 3499999999999999998666554332 2344445544 455666655
Q ss_pred CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCC--CCCCceEE
Q 001386 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LPENPRIC 629 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~ 629 (1088)
+..|+.||.+++.+......+. .|+++..++++..+++++.|.++.+.|+++.+....+...+. ....+.+.
T Consensus 321 --DkkvRfwD~Rs~~~~~sv~~gg----~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv 394 (459)
T KOG0288|consen 321 --DKKVRFWDIRSADKTRSVPLGG----RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV 394 (459)
T ss_pred --ccceEEEeccCCceeeEeecCc----ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeE
Confidence 4459999999999988888754 899999999999999999999999999999988888775432 22478899
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCc--ceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccC
Q 001386 630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN--LRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1088)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 707 (1088)
|||++.|+++|+.||.|+||++.+++....+...... |++++|+ +.|..+++++.+
T Consensus 395 fSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~----------------------~sG~~Llsadk~ 452 (459)
T KOG0288|consen 395 FSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWN----------------------PSGSGLLSADKQ 452 (459)
T ss_pred ECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEc----------------------CCCchhhcccCC
Confidence 9999999999999999999999999888877765554 9999998 457788888888
Q ss_pred ccceecc
Q 001386 708 NKSEVEK 714 (1088)
Q Consensus 708 ~~i~vw~ 714 (1088)
+.+.+|.
T Consensus 453 ~~v~lW~ 459 (459)
T KOG0288|consen 453 KAVTLWT 459 (459)
T ss_pred cceEecC
Confidence 9998884
No 97
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=6.1e-25 Score=211.66 Aligned_cols=243 Identities=19% Similarity=0.275 Sum_probs=204.4
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCc--EEEEEeCCCeEEEEEc
Q 001386 793 TDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--VIAIGMDDSTILIYNA 869 (1088)
Q Consensus 793 ~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~--~lasg~~dg~i~lwd~ 869 (1088)
....|...++++++ ++.++|+|+ |.+|+|||+.+...+..+..|.+.|+++.|.+ +-. .|++|+.||.|.+|+.
T Consensus 38 ~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~ 114 (362)
T KOG0294|consen 38 AFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRV 114 (362)
T ss_pred cccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEc
Confidence 33469999999999 788999998 89999999999999999999999999999998 554 8999999999999999
Q ss_pred CCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE
Q 001386 870 RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 949 (1088)
Q Consensus 870 ~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~ 949 (1088)
.+.+++..+++|.+.|+.++.+|.|++.++.+.|+.++.||+-.|+......+.. .-+.+.|+|.|.++++
T Consensus 115 ~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~---------~at~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 115 GSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN---------KATLVSWSPQGDHFVV 185 (362)
T ss_pred CCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC---------cceeeEEcCCCCEEEE
Confidence 9999999999999999999999999999999999999999999876443332222 1345999999999999
Q ss_pred EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccc
Q 001386 950 VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1029 (1088)
Q Consensus 950 ~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1029 (1088)
+..+.|-+|.+.+-........ ...+.++.|- ++..|++|..|+.|.+||.+++...+.+..+. .++..
T Consensus 186 ~~~~~i~i~q~d~A~v~~~i~~--~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~--------~RVK~ 254 (362)
T KOG0294|consen 186 SGRNKIDIYQLDNASVFREIEN--PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHE--------NRVKD 254 (362)
T ss_pred EeccEEEEEecccHhHhhhhhc--cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecch--------hheee
Confidence 9999999999998877766443 3456666664 57789999999999999999988888777443 34544
Q ss_pred eEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Q 001386 1030 HAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1059 (1088)
Q Consensus 1030 ~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~ 1059 (1088)
+..--.| ++.+|++++.||.|+|||+...
T Consensus 255 i~~~~~~-~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 255 IASYTNP-EHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEecC-CceEEEEeccCceEEEEEcccc
Confidence 4444456 7789999999999999999654
No 98
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=1.9e-25 Score=237.09 Aligned_cols=284 Identities=18% Similarity=0.278 Sum_probs=241.6
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEE-EE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR-VV 403 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~-l~ 403 (1088)
.+.+.|.||+..|..+++.++. .+++++.||++++|+-..++-+.+ ..+.+|.+-|.+ ++
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i~ 65 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSIC 65 (745)
T ss_pred eeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccc-----------------eecccCcceeeccce
Confidence 3557899999999999998877 478999999999999877665543 225668888887 88
Q ss_pred ECC-CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEec
Q 001386 404 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1088)
Q Consensus 404 ~s~-dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~ 482 (1088)
+-+ |+-.|++|+.|++|.+|...+...+. .+.+|...|.+++...++. ++|||.|.++++| ..+++...+.
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW--~~~~l~~~l~ 137 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVW--RIGELVYSLQ 137 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEe--cchhhhcccC
Confidence 886 66679999999999999999987665 7899999999999887775 8999999999999 5677788899
Q ss_pred cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001386 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 562 (1088)
+|...|++++..+.. .++||+.|.+|++| ..++...++.+|...|..+++-+++.++-+ + .++.|+.|++
T Consensus 138 gH~asVWAv~~l~e~---~~vTgsaDKtIklW--k~~~~l~tf~gHtD~VRgL~vl~~~~flSc-s----NDg~Ir~w~~ 207 (745)
T KOG0301|consen 138 GHTASVWAVASLPEN---TYVTGSADKTIKLW--KGGTLLKTFSGHTDCVRGLAVLDDSHFLSC-S----NDGSIRLWDL 207 (745)
T ss_pred CcchheeeeeecCCC---cEEeccCcceeeec--cCCchhhhhccchhheeeeEEecCCCeEee-c----CCceEEEEec
Confidence 999999999886543 89999999999999 457788899999999999999888766644 3 2777999998
Q ss_pred CCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC
Q 001386 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1088)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1088)
+|+.+..+.+|+ .-+.++....++..++++++|++++||+.. .+.+.+..+.. .|+++.+-++|. +++|++
T Consensus 208 -~ge~l~~~~ght---n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~S 278 (745)
T KOG0301|consen 208 -DGEVLLEMHGHT---NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGS 278 (745)
T ss_pred -cCceeeeeeccc---eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEecc
Confidence 899999999999 899999988888999999999999999976 77777776643 588899888885 678889
Q ss_pred CCcEEEEeCCCC
Q 001386 643 ENRIKILETPES 654 (1088)
Q Consensus 643 dg~i~iwd~~~~ 654 (1088)
||.|+||.....
T Consensus 279 DG~VrVfT~~k~ 290 (745)
T KOG0301|consen 279 DGRVRVFTVDKD 290 (745)
T ss_pred CceEEEEEeccc
Confidence 999999988754
No 99
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=9.4e-26 Score=237.41 Aligned_cols=295 Identities=18% Similarity=0.216 Sum_probs=238.0
Q ss_pred cCCCCce---eeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCC
Q 001386 332 EGSSSPM---SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1088)
Q Consensus 332 ~h~~~V~---~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg 408 (1088)
.|...|. ++..++.+.++|.+|+.||.|++|++..-......+ | ...+..|...|..++...+|
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~--------~-----~asme~HsDWVNDiiL~~~~ 85 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP--------Y-----IASMEHHSDWVNDIILCGNG 85 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccc--------h-----hhhhhhhHhHHhhHHhhcCC
Confidence 4554566 666665555589999999999999987644321100 0 11256699999999999999
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEe-cCCCCcEEEEEEeCCCcEEEEeCCCCc--eeEE-----
Q 001386 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF-SAPCKQISVITCGDDKTIKVWDAVTGS--RTYS----- 480 (1088)
Q Consensus 409 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~-s~d~~~l~l~s~s~d~~i~vwd~~~~~--~~~~----- 480 (1088)
+.|+++|.|.+|++|+...+. .....+++.|...|.|+++ .++.. ++++||-|+.|.+||+.+|. .+.+
T Consensus 86 ~tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t 162 (735)
T KOG0308|consen 86 KTLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVT 162 (735)
T ss_pred CceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccccc
Confidence 999999999999999999874 1222368899999999999 66666 89999999999999999883 3322
Q ss_pred ---ec-cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCcee
Q 001386 481 ---FE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1088)
Q Consensus 481 ---~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 556 (1088)
+. |+...|++++. +++|..+++|+..+.+++||.++...+..+.+|...|..+..++||+.+++++. +++
T Consensus 163 ~~sl~sG~k~siYSLA~--N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----Dgt 236 (735)
T KOG0308|consen 163 VNSLGSGPKDSIYSLAM--NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGT 236 (735)
T ss_pred cccCCCCCccceeeeec--CCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----Cce
Confidence 23 78889999988 556689999999999999999999999999999999999999999999999976 667
Q ss_pred EEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCE
Q 001386 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636 (1088)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 636 (1088)
|++||+...+++.++..|. ..|.++..+|+-..+++|+.||.|..=|+++......+-.. ..+|..+..+...+-
T Consensus 237 IrlWdLgqQrCl~T~~vH~---e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~--daPv~~l~~~~~~~~ 311 (735)
T KOG0308|consen 237 IRLWDLGQQRCLATYIVHK---EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE--DAPVLKLHLHEHDNS 311 (735)
T ss_pred EEeeeccccceeeeEEecc---CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC--CCchhhhhhccccCC
Confidence 9999999999999999988 77999999999999999999999999999884333222222 124677777765555
Q ss_pred EEEEeCCCcEEEEeCCC
Q 001386 637 LAVIANENRIKILETPE 653 (1088)
Q Consensus 637 l~~~~~dg~i~iwd~~~ 653 (1088)
+-+++.|+.|+-|...-
T Consensus 312 ~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 312 VWVTTTDSSIKRWKLEP 328 (735)
T ss_pred ceeeeccccceecCCcc
Confidence 57788899999997663
No 100
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.9e-25 Score=244.58 Aligned_cols=273 Identities=15% Similarity=0.232 Sum_probs=211.7
Q ss_pred cccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCC-----------------------CC--CCCcccCCCCCC-
Q 001386 732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS-----------------------TE--VPPRLYQPRHGP- 785 (1088)
Q Consensus 732 ~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~-----------------------~~--~~~~~~~~~~~~- 785 (1088)
.|.+.|.++.||+||++|++++.||.|+||.+........ .. ..-+.-..+++.
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 5899999999999999999999999999999876111000 00 000000001100
Q ss_pred --c---------ceee-ccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCC
Q 001386 786 --Q---------FMVN-DTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN 852 (1088)
Q Consensus 786 --~---------~~~~-~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~ 852 (1088)
+ +... -....+|...|..+.||.++ +|++++ |.+|++|++...+++..|. |...|||++|+|-|.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence 0 0000 00122699999999999987 555555 9999999999999999998 999999999999999
Q ss_pred cEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCC
Q 001386 853 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 932 (1088)
Q Consensus 853 ~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 932 (1088)
+|+++|+-||.|+||++...+.+.-..-+ .-|++++|+|||++.+.|+.+|.+++|+...-+......+....+.....
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 99999999999999999988776555544 77999999999999999999999999999987766655555554444434
Q ss_pred CCeEEEEEcCCCC--EEEEEeCCeEEEEEcCcceeeeeeecCCC-cCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCc
Q 001386 933 PSETHIQFHKDQT--RFLLVHETHLAIYEAEELTCLKQWFPISS-VPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1007 (1088)
Q Consensus 933 ~~v~~~~fs~dg~--~l~~~~d~~i~vwd~~~~~~~~~~~~~h~-~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~ 1007 (1088)
..|+.+.|.|... .|+++.|.+|+|||..+...+..+...|+ ..-....|+.||++|++++.|..|++|+...-.
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 4799999987654 78889999999999988888877654443 333567899999999999999999999985544
No 101
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.7e-25 Score=212.84 Aligned_cols=313 Identities=14% Similarity=0.153 Sum_probs=233.6
Q ss_pred ccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCcccccc
Q 001386 657 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK 736 (1088)
Q Consensus 657 ~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 736 (1088)
+..+++|.+.|++++|+ .||+.+++++.|++|++|++.--.......+... ...+.
T Consensus 79 ~~~LKgH~~~vt~~~Fs----------------------SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n--ve~dh 134 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFS----------------------SDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN--VEYDH 134 (420)
T ss_pred hhhhhccCCceeeeEEc----------------------CCCceeEEEeCCceEEEEecchhhhhhhhHhhcc--ccCCC
Confidence 34678999999999997 7899999999999999999653222222222111 12346
Q ss_pred EEEEEEecCCceEEEec-cccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEE
Q 001386 737 ISRLTYNNGGQAIFALA-SNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 815 (1088)
Q Consensus 737 i~~~~~s~~g~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 815 (1088)
.+.++|+||.+.++... ....+++|.+..... -.......-||-.. + ..-|...+..+-...++.+|++
T Consensus 135 pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d-G~~~~~~v~~D~~~--------f-~~kh~v~~i~iGiA~~~k~ims 204 (420)
T KOG2096|consen 135 PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD-GSGSHHFVHIDNLE--------F-ERKHQVDIINIGIAGNAKYIMS 204 (420)
T ss_pred ceEEEECCCcceEEEEEccCCEEEEEEeeeccc-CCCCcccccccccc--------c-chhcccceEEEeecCCceEEEE
Confidence 78899999988776554 567889998764432 00111111122100 1 0126667778888889999999
Q ss_pred Ee-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcC---Cc-----eeeeeeccccCCee
Q 001386 816 AS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR---SS-----EVISKLEGHSKRVT 886 (1088)
Q Consensus 816 ~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~---~~-----~~~~~l~~h~~~V~ 886 (1088)
++ |.+|.+|++. |+.+..+......-+..+.|| +|+++|+++..-.|+||.+- .| ..+..|+||.+.|.
T Consensus 205 as~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~ 282 (420)
T KOG2096|consen 205 ASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVL 282 (420)
T ss_pred ecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhhee
Confidence 98 7889999999 899888887777778899999 99999999999999999873 23 24577899999999
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCceee--eeeeecCCCC-ccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcc
Q 001386 887 GLVFSDALNILVSSGGDAQIFVWDVDGWGIQT--CRSLQTPDGV-MTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL 963 (1088)
Q Consensus 887 ~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~--~~~~~~~~~~-~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~ 963 (1088)
.++||++...++|.|.||+++|||++-.-... ...++..... .........++.+|.|..||++....+++|..++|
T Consensus 283 ~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g 362 (420)
T KOG2096|consen 283 AAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDG 362 (420)
T ss_pred eeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccC
Confidence 99999999999999999999999987522111 1222222110 11112344899999999999999999999999999
Q ss_pred eeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC
Q 001386 964 TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1006 (1088)
Q Consensus 964 ~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~ 1006 (1088)
+....+...|...|+++.|++||+++++++ |..++|..-..|
T Consensus 363 ~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 363 KDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTPG 404 (420)
T ss_pred ccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCCCc
Confidence 988888888999999999999999999885 788888764444
No 102
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=5.4e-25 Score=210.73 Aligned_cols=276 Identities=16% Similarity=0.166 Sum_probs=219.0
Q ss_pred ecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEE
Q 001386 392 VRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~-dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vw 470 (1088)
-...+..|.+++||| ...+++++|.|++|++|++........ .....|.++|.+++|+.||. .+++|+.|+.+++|
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLW 99 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEE
Confidence 344678999999999 666777999999999999987422222 24668999999999999998 79999999999999
Q ss_pred eCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeC
Q 001386 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1088)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 550 (1088)
|+.+++ +..+..|.++|..+.|.+..+-..|++||.|++|+.||.+....+..+..++ .++++. --..+++++..
T Consensus 100 DL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~D--v~~pm~vVata- 174 (347)
T KOG0647|consen 100 DLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAAD--VLYPMAVVATA- 174 (347)
T ss_pred EccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehh--ccCceeEEEec-
Confidence 999995 5567779999999999877776789999999999999999888887776655 333333 23345555544
Q ss_pred CCCceeEEEEeCCCCcee-EEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC--eeeEEEeCCCC------
Q 001386 551 KEGESFLVEWNESEGAIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGG------ 621 (1088)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~------ 621 (1088)
+..|.+|+++.+... +...... +..+++++..+|....+.|+-+|.+.|..+..+ +.-.+++.|..
T Consensus 175 ---~r~i~vynL~n~~te~k~~~SpL--k~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~ 249 (347)
T KOG0647|consen 175 ---ERHIAVYNLENPPTEFKRIESPL--KWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVND 249 (347)
T ss_pred ---CCcEEEEEcCCCcchhhhhcCcc--cceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCC
Confidence 445999999765432 2222222 367899999999888899999999999999886 44445555432
Q ss_pred -CCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCccee
Q 001386 622 -LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 680 (1088)
Q Consensus 622 -~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 680 (1088)
.-.|++++|+|.-..|++++.||++.+||-.....+.....+..+|++..|+..|...+
T Consensus 250 ~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifa 309 (347)
T KOG0647|consen 250 DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFA 309 (347)
T ss_pred ceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEE
Confidence 22478899999999999999999999999999888888899999999999997665553
No 103
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.7e-26 Score=239.07 Aligned_cols=356 Identities=17% Similarity=0.189 Sum_probs=261.8
Q ss_pred EEEEC-CCCCEEEEEeCCCEEEEEEccCCCcc---cceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-
Q 001386 401 RVVWS-PDGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG- 475 (1088)
Q Consensus 401 ~l~~s-~dg~~las~~~dg~i~vwd~~~~~~~---~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~- 475 (1088)
.+..+ |.++||.+|+.||.|++|++...... .....+..|...|+.++...+++ .++++|.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 34444 36788999999999999998754431 12346788999999999999998 7999999999999999887
Q ss_pred -ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc--eE--------Eec-CCCCceEEEEEccCCCE
Q 001386 476 -SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RV--------DYD-APGLGCTRMAYSANGRR 543 (1088)
Q Consensus 476 -~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~--------~~~-~~~~~v~~~~~s~~g~~ 543 (1088)
-|+.++..|...|.++++. ..+...+++|+.|+.|.+||++++.. .. .+. ++...|++++.++.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 6888999999999999984 33557999999999999999997633 11 122 55668999999999988
Q ss_pred EEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCC
Q 001386 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1088)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1088)
+++|+.. ..+++||.++++.+..++||. ..|.++..++||..+++++.||+|++||+...+++.++..|..
T Consensus 186 ivsGgte----k~lr~wDprt~~kimkLrGHT---dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e-- 256 (735)
T KOG0308|consen 186 IVSGGTE----KDLRLWDPRTCKKIMKLRGHT---DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE-- 256 (735)
T ss_pred EEecCcc----cceEEeccccccceeeeeccc---cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--
Confidence 8888764 449999999999999999999 9999999999999999999999999999999999999988865
Q ss_pred CCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccc
Q 001386 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1088)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 703 (1088)
.|+++..+|+-..+.+|+.||.|..-|+.+......+.....+|..+..+ .+...+-.
T Consensus 257 ~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~----------------------~~~~~~Wv 314 (735)
T KOG0308|consen 257 GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLH----------------------EHDNSVWV 314 (735)
T ss_pred ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhc----------------------cccCCcee
Confidence 58999999999999999999999999988764444444444444433333 22222345
Q ss_pred cccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCC
Q 001386 704 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRH 783 (1088)
Q Consensus 704 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~ 783 (1088)
+..|+.|+-|.... ..++++.|.... -+.+......+... +
T Consensus 315 tTtds~I~rW~~~~---------------------~~~l~~s~~~~~-~~T~~~~~~~~~~~-----------------t 355 (735)
T KOG0308|consen 315 TTTDSSIKRWKLEP---------------------DIALSVSGDLDF-FSTDSNNHSCDLTN-----------------T 355 (735)
T ss_pred eeccccceecCCcc---------------------ccccccCCCCCc-ccccCCCccccccC-----------------C
Confidence 55667777776441 113333333222 11111111111000 0
Q ss_pred CCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEec
Q 001386 784 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIM 836 (1088)
Q Consensus 784 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~ 836 (1088)
. ... . .....+..-++-.|.+.+++-. .|.+.+||+-....+..+.
T Consensus 356 p--~~v--i---~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g 402 (735)
T KOG0308|consen 356 P--DSV--I---PGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG 402 (735)
T ss_pred C--cee--c---cCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence 0 000 0 0223344455666888888886 8999999998776665554
No 104
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=1.2e-24 Score=243.83 Aligned_cols=270 Identities=17% Similarity=0.198 Sum_probs=209.7
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcc----------cceeEeccCCCCEEEEEecC-CCCcEEEEEEeC
Q 001386 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA----------RQQLEIDAHVGNVNDLAFSA-PCKQISVITCGD 463 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~----------~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~s~ 463 (1088)
|-..|.....++|+..+++++.+..+..|+...+..+ .....+.+|.+.|++++|+| +++ +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 4456777777888777777777777777776544322 21224779999999999999 777 8999999
Q ss_pred CCcEEEEeCCCC-------ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEE
Q 001386 464 DKTIKVWDAVTG-------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1088)
Q Consensus 464 d~~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 536 (1088)
|++|++||+.++ .++..+.+|...|.+++|+|.. +.+|++++.|+.|++||+++......+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 999999999765 3567889999999999998753 35899999999999999999888888888999999999
Q ss_pred EccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEe----CCCcEEEEEcCCCe-
Q 001386 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQ- 611 (1088)
Q Consensus 537 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~- 611 (1088)
|+|+|.+|++++. ++.|++||+++++.+..+.+|. ......+.|.+++..+++++ .|+.|++||+++..
T Consensus 176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~--~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHA--SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCC--CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 9999999999875 5669999999999998888887 23345678899888888754 47899999998754
Q ss_pred eeEEEeCCCCCCCCceEEEecCCCEEEEEe-CCCcEEEEeCCCCCccccccc-ccCcceeeeecC
Q 001386 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGV-LSDNLRKLSVNP 674 (1088)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~p 674 (1088)
++.....+. ...+....|+++++++++++ .|+.|++||+.++..+..... ....+..+++.|
T Consensus 250 p~~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 250 PYSTVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred ceeEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 333333222 22355667899999999887 599999999998876554332 233445555554
No 105
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.7e-25 Score=208.67 Aligned_cols=200 Identities=18% Similarity=0.239 Sum_probs=165.8
Q ss_pred CCCCeeEEEEec-CCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee
Q 001386 797 SQEAVPCFALSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 874 (1088)
Q Consensus 797 ~~~~v~~~~~s~-dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~ 874 (1088)
|..+|.++.+++ +++.+++++ |++|++|+....+.+.++.+|...|...+|+|...+++++++.||.+++||++....
T Consensus 103 H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk 182 (311)
T KOG0277|consen 103 HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK 182 (311)
T ss_pred hhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc
Confidence 556666666665 344455556 999999999999999999999999999999999999999999999999999987443
Q ss_pred eeeeccccCCeeEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE--Ee
Q 001386 875 ISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VH 951 (1088)
Q Consensus 875 ~~~l~~h~~~V~~l~~s~-dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~--~~ 951 (1088)
...+..|...|.++.|+. +...|+|++.|+.|++||+..-. .++..+.+|.- .|..++|||...-+++ +.
T Consensus 183 ~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r----~pl~eL~gh~~---AVRkvk~Sph~~~lLaSasY 255 (311)
T KOG0277|consen 183 FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR----TPLFELNGHGL---AVRKVKFSPHHASLLASASY 255 (311)
T ss_pred eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc----ccceeecCCce---EEEEEecCcchhhHhhhccc
Confidence 444899999999999986 66889999999999999998733 23444456654 6999999998765554 58
Q ss_pred CCeEEEEEcCcceeeeeeecCCCcCEEEEEEee-CCCEEEEEeCCCcEEEEEc
Q 001386 952 ETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEA 1003 (1088)
Q Consensus 952 d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~s~s~dg~v~vwd~ 1003 (1088)
|-++++||...+.........|..-|..+.||+ ++.++|+++.|+.+.||+-
T Consensus 256 DmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 256 DMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 899999999977655555778999999999998 7789999999999999983
No 106
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.94 E-value=1e-23 Score=220.28 Aligned_cols=627 Identities=15% Similarity=0.157 Sum_probs=331.9
Q ss_pred eeecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEEccCCCccc---ceeEeccCCCCEEEEEecCCCCcEEEEEEeCCC
Q 001386 390 ALVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDAR---QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1088)
Q Consensus 390 ~~~~~h~~~V~~l~~s~-dg~~las~~~dg~i~vwd~~~~~~~~---~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~ 465 (1088)
.++.+|+..|+.+.|+| +..+||+|+.|..|+||.+..|.... .-..+.+..-.|-++.|+|.... +++ .+..|
T Consensus 73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~-s~a~g 150 (1012)
T KOG1445|consen 73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILA-SGAHG 150 (1012)
T ss_pred ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEE-eccCc
Confidence 34889999999999999 77899999999999999998543211 12223344457889999998774 344 45588
Q ss_pred cEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc-eEEecCCCC-ceEEEEEccCCCE
Q 001386 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGL-GCTRMAYSANGRR 543 (1088)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~-~v~~~~~s~~g~~ 543 (1088)
+++|||+.+++.+..+.+|...|.++.| +.||.++++++.|+.|+|||.+.... +.....|++ .-..+.|-.+-..
T Consensus 151 ~v~i~D~stqk~~~el~~h~d~vQSa~W--seDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~r 228 (1012)
T KOG1445|consen 151 SVYITDISTQKTAVELSGHTDKVQSADW--SEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWER 228 (1012)
T ss_pred eEEEEEcccCceeecccCCchhhhcccc--ccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhh
Confidence 9999999999999999999999999998 67899999999999999999986544 444455554 3345778777778
Q ss_pred EEEEeeCCCCceeEEEEeCCC-CceeEEEeccccccccEEEEEEeCCCCEEEE-EeCCCcEEEEEcCCCeeeEE--EeCC
Q 001386 544 LFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTT--IDAG 619 (1088)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~~~--~~~~ 619 (1088)
|++.+.+......|++||.+. +..++++.... ...+..--|.||.+.++. |-.+.++..+.+...++... +...
T Consensus 229 lisTGF~~~R~reV~~~Dtr~f~~p~~tleld~--stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~t 306 (1012)
T KOG1445|consen 229 LISTGFTTKRIREVRAYDTRKFGAPVHTLELDS--STGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELT 306 (1012)
T ss_pred hhhcccchhhheeeeeeeccccCCcceeEEeec--ccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhc
Confidence 888777666677799999875 34455554433 234555568899877665 44677888888776543321 1110
Q ss_pred CCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCC-----------cc---------------------cccccccCcc
Q 001386 620 GGLPENPRICFNKNGTLLAVIANENRIKILETPESN-----------SV---------------------DAAGVLSDNL 667 (1088)
Q Consensus 620 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~-----------~~---------------------~~~~~~~~~v 667 (1088)
........++-|...+-+..+. ..+++.+.... .+ .-+.+....+
T Consensus 307 -le~~~~GA~lvpkral~VM~~E--V~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~v 383 (1012)
T KOG1445|consen 307 -LEEQTLGATLVPKRALHVMDGE--VDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVV 383 (1012)
T ss_pred -chhhhccceecchhhhhhcchh--hhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCccccc
Confidence 0001122233332211111111 11222222110 00 0111222233
Q ss_pred eeeeecCCCcceecccc--------CCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEE
Q 001386 668 RKLSVNPISTVTGAGIA--------NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISR 739 (1088)
Q Consensus 668 ~~~~~~p~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~ 739 (1088)
..+.+.|.......... .....|.....+ ..+-+...+.-.+-+. .+... ..+.......+..
T Consensus 384 qKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~p---paaP~~~~n~~~~~~~---~Pd~~---~qpaV~~~~e~r~ 454 (1012)
T KOG1445|consen 384 QKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTP---PAAPRPMSNNNSSSNN---VPDVQ---EQPAVPKKEEVRE 454 (1012)
T ss_pred cccccCchhccCCCCCCCCCCCcccccCCCCccccCC---CCCCCccccccccccC---CCccc---cCCCcCcchhhhh
Confidence 44444433222210000 000000000000 0000000000000000 00000 0000000011111
Q ss_pred EEEec----CC---------------ceEEEeccccceEEEEccCCCCCCC-CCCCCcccCCCCCCcceeeccCCCCCCC
Q 001386 740 LTYNN----GG---------------QAIFALASNGVHLMWRWPRNDLTLS-TEVPPRLYQPRHGPQFMVNDTTDSNSQE 799 (1088)
Q Consensus 740 ~~~s~----~g---------------~~l~~~~~dg~v~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1088)
+.+-| +| ..+-+.+.. .+.+ ......... ....+.+....-|+..-. .+..+...
T Consensus 455 l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~-~~~~--~kP~S~plt~~~s~~s~~~P~~~ksvPe--~~~~~~g~ 529 (1012)
T KOG1445|consen 455 LDYRPYEKENGVHTPNADADSTQGNSSPISTISPE-PVTI--VKPASTPLTDSVSTPSVVGPAFGKSVPE--QPPVNFGK 529 (1012)
T ss_pred hcccccccccCccCCCcccccccCCCCCccccCCC-cccc--cCCCCcccccccccccccCccccccCCC--CCCcccCC
Confidence 11100 00 000000000 0000 000000000 000000000111100000 00000000
Q ss_pred CeeEEEEecCCCEEEEEe-------CCcEEEEEcCCceeE------EEecCC----CCCeEEEEEcCCCCcEEEE--EeC
Q 001386 800 AVPCFALSKNDAYLFSAS-------GGVISLYIVMTFKTI------LTIMPP----SPTATSLAFNPHDNNVIAI--GMD 860 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~-------dg~i~iwd~~~~~~~------~~~~~~----~~~i~~l~~sp~d~~~las--g~~ 860 (1088)
.+ +.......+.+ =|.+.-|.-..|... ..+++- .++... |+. +..++|+ .+.
T Consensus 530 ~~-----sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnG--fca-n~~rvAVPL~g~ 601 (1012)
T KOG1445|consen 530 PI-----SATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNG--FCA-NNKRVAVPLAGS 601 (1012)
T ss_pred Cc-----cccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCc--eee-ccceEEEEecCC
Confidence 00 00000111111 012222221112111 111110 111122 333 4556664 456
Q ss_pred CCeEEEEEcCC-ceee-eeecc--ccCCeeEEEECC-CCCEEEEEeCCCcEEEEEcCCCceee--eeeeecCCCCccCCC
Q 001386 861 DSTILIYNARS-SEVI-SKLEG--HSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQT--CRSLQTPDGVMTLAP 933 (1088)
Q Consensus 861 dg~i~lwd~~~-~~~~-~~l~~--h~~~V~~l~~s~-dg~~las~s~Dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~ 933 (1088)
.|.|-||+++. |++- ..+.+ ....|+.+.|.| |...||.+++||.|++|.+..+.... ...-..+..|. .
T Consensus 602 gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~---e 678 (1012)
T KOG1445|consen 602 GGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHG---E 678 (1012)
T ss_pred CceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeeccc---c
Confidence 78999999976 3321 11221 345699999999 77889999999999999998754222 11222333333 3
Q ss_pred CeEEEEEcCCC-CEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEE
Q 001386 934 SETHIQFHKDQ-TRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1011 (1088)
Q Consensus 934 ~v~~~~fs~dg-~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~ 1011 (1088)
.|+++.|+|-. ..|++ +.|-+|++||+.++..... +.+|.+.|..++|||||+.+++.+.||+|+||+-.+++.-..
T Consensus 679 KI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~-l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~ 757 (1012)
T KOG1445|consen 679 KITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSR-LVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY 757 (1012)
T ss_pred eEEEEEecchhhhHhhhhhccceeeeeehhhhhhhhe-eccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccc
Confidence 79999999964 44555 6899999999999988777 559999999999999999999999999999999888865322
Q ss_pred eccccccCCCCccccccceEEEECCCCCCEEEEEeCCC----cEEEEeCCCCC
Q 001386 1012 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG----EVYVIEPNEPG 1060 (1088)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg----~v~~w~l~~~~ 1060 (1088)
-. .++-+ .+.-.+.|-- ||.++++.|-|. .|.+||...-.
T Consensus 758 Eg------~gpvg--tRgARi~wac-dgr~viv~Gfdk~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 758 EG------KGPVG--TRGARILWAC-DGRIVIVVGFDKSSERQVQMYDAQTLD 801 (1012)
T ss_pred cC------CCCcc--CcceeEEEEe-cCcEEEEecccccchhhhhhhhhhhcc
Confidence 21 11111 1222345554 788888888775 67888875533
No 107
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=5.9e-25 Score=222.68 Aligned_cols=250 Identities=22% Similarity=0.287 Sum_probs=213.8
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccc--------------eeEe-ccCCCCEEEEEecCCCCcE
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ--------------QLEI-DAHVGNVNDLAFSAPCKQI 456 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~--------------~~~~-~~h~~~v~~~~~s~d~~~l 456 (1088)
...|.-+|.+++++||+++..+++.+++|.-|++.+|+..+. ...- ++|...+.+++.|+||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 456999999999999999999999999999999999874311 1011 37888999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEE
Q 001386 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1088)
Q Consensus 457 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 536 (1088)
+|++|+.|..|.|||.++.+.++.+.+|.+.|.+++|.. ....+++++.|+.|++|+++....+.++.+|...|..+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~--gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK--GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeec--CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 899999999999999999999999999999999999954 445799999999999999999888889999999999998
Q ss_pred EccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEE
Q 001386 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616 (1088)
Q Consensus 537 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 616 (1088)
...-++.+-+++. +.++++|++.. +..-.+.++. +.+-|++|-.+ ..+++|+.+|.|.+|++.+.+++.+.
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~e-esqlifrg~~---~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIPE-ESQLIFRGGE---GSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred hhcccceEEeccc----cceeEEEeccc-cceeeeeCCC---CCeeeEEEecc-cceeeccCCceEEEeeecccCceeEe
Confidence 8888888877765 56699999943 3444666766 88999999765 68999999999999999999998877
Q ss_pred eCCCCC----------CCCceEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 001386 617 DAGGGL----------PENPRICFNKNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 617 ~~~~~~----------~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
....+. ..|++++..|...++|+|+.+|.|++|.+..+
T Consensus 365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 542211 15778999999999999999999999998876
No 108
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.3e-24 Score=218.06 Aligned_cols=282 Identities=16% Similarity=0.193 Sum_probs=244.0
Q ss_pred CCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~ 414 (1088)
..+.++...|... .+.+|+.|.++.++|..+++.+.. +.||.-.|+.+.|+|+...++++
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~a 279 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVITA 279 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheeec
Confidence 4788888888744 689999999999999999988876 89999999999999999999999
Q ss_pred eCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEecc--CCccEEEEe
Q 001386 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG--HGAPVYSLC 492 (1088)
Q Consensus 415 ~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~--~~~~v~~~~ 492 (1088)
+.|..|+||......... ....|..+|+.+...|.|. |+++++.|++..+.|+++|.++..... ..-.+++.+
T Consensus 280 Sad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred CCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 999999999998876444 5778999999999999999 899999999999999999999876653 334578888
Q ss_pred eeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEe
Q 001386 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572 (1088)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 572 (1088)
||| ||..+.+|..||.|++||+.+......+.+|.++|..++|+.+|-+|++++. ++.|.+||++.-+..+++.
T Consensus 355 fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 355 FHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhcccceee
Confidence 865 7789999999999999999999999999999999999999999999999986 4449999999888888887
Q ss_pred ccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC--eeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEe
Q 001386 573 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1088)
Q Consensus 573 ~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 650 (1088)
... ...+.++.|.+.|.+++.++.|=+|++++-.+. ..+..+..+. ...+++.|....+++++++.|..++++.
T Consensus 429 l~~--~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~s--g~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 429 LDE--KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHS--GLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred ccc--cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcc--cccceeeecccceEEeeccchhheEEee
Confidence 766 457999999999999999988877777775544 3444444443 3578999999999999999999988875
Q ss_pred C
Q 001386 651 T 651 (1088)
Q Consensus 651 ~ 651 (1088)
+
T Consensus 505 ~ 505 (506)
T KOG0289|consen 505 L 505 (506)
T ss_pred c
Confidence 4
No 109
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=4e-25 Score=247.31 Aligned_cols=280 Identities=17% Similarity=0.240 Sum_probs=242.3
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCC
Q 001386 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473 (1088)
Q Consensus 394 ~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~ 473 (1088)
.+...+.+..|. +.++++++.+++|++||..++..+.. .+.||.+.|++++|..-+. ++++|+.|.++++||..
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~ 279 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCS 279 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecC
Confidence 367788888888 77899999999999999999876552 3889999999999987555 89999999999999999
Q ss_pred CCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCC
Q 001386 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1088)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 553 (1088)
+|+|.+.+.+|...|.++.. ....+++|+.|.+|++|++.++..+..+.+|..+|.++..+ +.++++++.
T Consensus 280 sg~C~~~l~gh~stv~~~~~----~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~---- 349 (537)
T KOG0274|consen 280 TGECTHSLQGHTSSVRCLTI----DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY---- 349 (537)
T ss_pred CCcEEEEecCCCceEEEEEc----cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec----
Confidence 99999999999999999976 44578899999999999999999999999999999999987 889999886
Q ss_pred ceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC-eeeEEEeCCCCCCCCceEEEec
Q 001386 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNK 632 (1088)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~ 632 (1088)
++.|.+||+.++++++.+.+|. ..|.++.+... ..+++|+.|++|++||+.+. +++.++..|... +..+ ..
T Consensus 350 d~~v~VW~~~~~~cl~sl~gH~---~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~--v~~l--~~ 421 (537)
T KOG0274|consen 350 DGTVKVWDPRTGKCLKSLSGHT---GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL--VSSL--LL 421 (537)
T ss_pred CceEEEEEhhhceeeeeecCCc---ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc--cccc--cc
Confidence 4469999999999999999998 99999988765 89999999999999999999 999999877653 3333 34
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCccccccc-ccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccce
Q 001386 633 NGTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 711 (1088)
Q Consensus 633 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 711 (1088)
.+++|++++.|++|++||..++..++.+.+ +...+.++++. ...+++++.+++++
T Consensus 422 ~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~------------------------~~~il~s~~~~~~~ 477 (537)
T KOG0274|consen 422 RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG------------------------KEEILCSSDDGSVK 477 (537)
T ss_pred ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC------------------------cceEEEEecCCeeE
Confidence 578999999999999999999999999888 55666655543 35678889999999
Q ss_pred eccccccCCC
Q 001386 712 VEKPLFARPS 721 (1088)
Q Consensus 712 vw~~~~~~~~ 721 (1088)
+||+......
T Consensus 478 l~dl~~~~~~ 487 (537)
T KOG0274|consen 478 LWDLRSGTLI 487 (537)
T ss_pred EEecccCchh
Confidence 9997754433
No 110
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.5e-24 Score=217.58 Aligned_cols=280 Identities=16% Similarity=0.281 Sum_probs=224.0
Q ss_pred CCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCccc
Q 001386 623 PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 702 (1088)
Q Consensus 623 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 702 (1088)
+.+.++...|....+.+|+.|..+.++|..+++.+..+.+|.
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~-------------------------------------- 261 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHT-------------------------------------- 261 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcc--------------------------------------
Confidence 356777777777889999999999999999888877777654
Q ss_pred ccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCC
Q 001386 703 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPR 782 (1088)
Q Consensus 703 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 782 (1088)
..|..+.++++...+++++.|..|++|.......
T Consensus 262 --------------------------------kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-------------- 295 (506)
T KOG0289|consen 262 --------------------------------KKITSVKFHKDLDTVITASADEIIRVWSVPLSSE-------------- 295 (506)
T ss_pred --------------------------------eEEEEEEeccchhheeecCCcceEEeeccccccC--------------
Confidence 4555666666666677777777777776554322
Q ss_pred CCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCC--CCCeEEEEEcCCCCcEEEEEe
Q 001386 783 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPP--SPTATSLAFNPHDNNVIAIGM 859 (1088)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~sp~d~~~lasg~ 859 (1088)
. .....|..+|+.+...|.|.|+++++ |++..+.|+.++..+...... .-.+++.+|+| ||.++++|.
T Consensus 296 ----~----~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt 366 (506)
T KOG0289|consen 296 ----P----TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGT 366 (506)
T ss_pred ----c----cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccC
Confidence 0 11124899999999999999999998 889999999999988776642 34689999999 899999999
Q ss_pred CCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEE
Q 001386 860 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 939 (1088)
Q Consensus 860 ~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 939 (1088)
.||.|+|||+.++..+..|.+|+++|..++|+.+|-+||++++|+.|++||+..-+.. ..++..+. .++.++.
T Consensus 367 ~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~--kt~~l~~~-----~~v~s~~ 439 (506)
T KOG0289|consen 367 PDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNF--KTIQLDEK-----KEVNSLS 439 (506)
T ss_pred CCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccc--ceeecccc-----ccceeEE
Confidence 9999999999999999999999999999999999999999999999999999874422 22222222 1488999
Q ss_pred EcCCCCEEEEE-eCCeEEEEEcC--cceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 001386 940 FHKDQTRFLLV-HETHLAIYEAE--ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1003 (1088)
Q Consensus 940 fs~dg~~l~~~-~d~~i~vwd~~--~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~ 1003 (1088)
|.+.|.+|+++ .+=+|++++-. +..++.. ...|.+..+.+.|..+.+++++++.|..++++.+
T Consensus 440 fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~-~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 440 FDQSGTYLGIAGSDLQVYICKKKTKSWTEIKE-LADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EcCCCCeEEeecceeEEEEEecccccceeeeh-hhhcccccceeeecccceEEeeccchhheEEeec
Confidence 99999999995 44455555533 4556655 4467889999999999999999999999888764
No 111
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4.9e-26 Score=222.93 Aligned_cols=293 Identities=11% Similarity=0.156 Sum_probs=232.8
Q ss_pred hhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1088)
.+-+..|.||.+.|.|++=+|..-..+|+|+.||.|+|||+.+..++.+ +..|.+.|..|+
T Consensus 56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~ 116 (433)
T KOG0268|consen 56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGIC 116 (433)
T ss_pred ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEE
Confidence 4455677999999999999998844799999999999999999888876 777999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEecc
Q 001386 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1088)
Q Consensus 404 ~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~ 483 (1088)
+.. ..+++++.|.+|+.|.++.. .++ ++.+ .+.+..+.-+..+. .++|+|. .|.|||.....++..+.-
T Consensus 117 v~~--~~~~tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smsw 185 (433)
T KOG0268|consen 117 VTQ--TSFFTVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSW 185 (433)
T ss_pred ecc--cceEEecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCc--eeeecccccCCccceeec
Confidence 987 77888899999999998863 222 3333 23455666555555 6888876 499999999999999988
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 563 (1088)
....|.++.|+|... ..|++++.|+.|.+||++........... ..-..++|+|.+-.++++.. +..++.+|.+
T Consensus 186 G~Dti~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnPeafnF~~a~E----D~nlY~~DmR 259 (433)
T KOG0268|consen 186 GADSISSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVILT-MRTNTICWNPEAFNFVAANE----DHNLYTYDMR 259 (433)
T ss_pred CCCceeEEecCCCcc-hheeeeccCCceEEEecccCCccceeeee-ccccceecCccccceeeccc----cccceehhhh
Confidence 888999999987644 58888889999999999988776543321 23456899996666666643 6669999987
Q ss_pred CC-ceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC
Q 001386 564 EG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1088)
Q Consensus 564 ~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1088)
.- ..+..+.+|. ..|..+.|+|.|+-+++||.|.+|+||....+..-...... ....|.++.||.|.+++++|++
T Consensus 260 ~l~~p~~v~~dhv---sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-RMq~V~~Vk~S~Dskyi~SGSd 335 (433)
T KOG0268|consen 260 NLSRPLNVHKDHV---SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-RMQHVFCVKYSMDSKYIISGSD 335 (433)
T ss_pred hhcccchhhcccc---eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh-hhheeeEEEEeccccEEEecCC
Confidence 53 3455555555 99999999999999999999999999999877654433222 2235899999999999999999
Q ss_pred CCcEEEEeCCCCCc
Q 001386 643 ENRIKILETPESNS 656 (1088)
Q Consensus 643 dg~i~iwd~~~~~~ 656 (1088)
|+.|++|.....+.
T Consensus 336 d~nvRlWka~Asek 349 (433)
T KOG0268|consen 336 DGNVRLWKAKASEK 349 (433)
T ss_pred Ccceeeeecchhhh
Confidence 99999998775433
No 112
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=4e-24 Score=206.04 Aligned_cols=272 Identities=20% Similarity=0.300 Sum_probs=215.5
Q ss_pred CCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEE
Q 001386 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1088)
Q Consensus 334 ~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las 413 (1088)
.+.|+.|.|+|.+.. |++++.||++++||+...+.... -.|+.++.+++|.+ ...+++
T Consensus 13 ~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~~--------------------~~~~~plL~c~F~d-~~~~~~ 70 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKLK--------------------FKHGAPLLDCAFAD-ESTIVT 70 (323)
T ss_pred hhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhhh--------------------eecCCceeeeeccC-CceEEE
Confidence 568999999999885 55667999999999988755432 22899999999996 667889
Q ss_pred EeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEee
Q 001386 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493 (1088)
Q Consensus 414 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 493 (1088)
|+.||.|+++|+.++... .+..|..+|.|+.+++... .+++||.|++|++||.+...+...+. ....|.++..
T Consensus 71 G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v 143 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV 143 (323)
T ss_pred eccCceEEEEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEec
Confidence 999999999999998654 3778999999999998777 79999999999999998766665555 3348888865
Q ss_pred eeeCCceEEEEEecCCeEEEEECCCCCceEEecCC--CCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC--CceeE
Q 001386 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GAIKR 569 (1088)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~--~~~~~ 569 (1088)
.+..|+.|+.|..|.+||+++.......... .-.+.++++-|++.-.++++.+ |...+..+|... .....
T Consensus 144 ----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSie--GRVavE~~d~s~~~~skky 217 (323)
T KOG1036|consen 144 ----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIE--GRVAVEYFDDSEEAQSKKY 217 (323)
T ss_pred ----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeec--ceEEEEccCCchHHhhhce
Confidence 5568999999999999999987765533222 2368899999988888887762 333333344431 13344
Q ss_pred EEeccccc------cccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC
Q 001386 570 TYQGLQLQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1088)
Q Consensus 570 ~~~~~~~~------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1088)
.|+.|... ..+|++++|+|--..+++|+.||.|.+||+.+.+.+..+... ...|.+++|+.+|..||+++.
T Consensus 218 aFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 218 AFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEEec
Confidence 56666521 247899999999999999999999999999999988888654 235899999999999999975
No 113
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.2e-24 Score=232.71 Aligned_cols=247 Identities=19% Similarity=0.303 Sum_probs=218.5
Q ss_pred ccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecC-CCCCeEEEEECCCCC
Q 001386 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD-PGVSVNRVVWSPDGS 409 (1088)
Q Consensus 331 ~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-h~~~V~~l~~s~dg~ 409 (1088)
..+.+.|+++.|+++|. +||+|..+|.|.|||..+.+.+.. +.+ |...|.+++|+ +.
T Consensus 214 ~~~~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~~-------------------~~~~h~~rvg~laW~--~~ 271 (484)
T KOG0305|consen 214 SFGEELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKKTRT-------------------LRGSHASRVGSLAWN--SS 271 (484)
T ss_pred ecCCCceEEEEECCCCC-EEEEeecCCeEEEEehhhcccccc-------------------ccCCcCceeEEEecc--Cc
Confidence 34478999999999999 799999999999999998887765 555 99999999998 78
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEE
Q 001386 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~ 489 (1088)
.+.+|+.++.|..+|+...+.... .+.+|...|..+.|++|+. ++++|+.|+.+.|||.....++..+..|.+.|.
T Consensus 272 ~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVK 347 (484)
T KOG0305|consen 272 VLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVK 347 (484)
T ss_pred eEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCCccccEEEeccceeee
Confidence 899999999999999998876543 3789999999999999999 899999999999999988899999999999999
Q ss_pred EEeeeeeCCceEEEEE--ecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCce
Q 001386 490 SLCPHAKENIHFIFSI--SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1088)
Q Consensus 490 ~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1088)
+++|+|-..+ +||+| +.|++|++||..++..+.... .+..|.++.|++..+-|+++... .+..|.||+..+.+.
T Consensus 348 A~awcP~q~~-lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~--s~n~i~lw~~ps~~~ 423 (484)
T KOG0305|consen 348 ALAWCPWQSG-LLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGY--SENQITLWKYPSMKL 423 (484)
T ss_pred EeeeCCCccC-ceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCC--CCCcEEEEeccccce
Confidence 9999987654 78876 569999999999776665543 45689999999999888877653 355799999999999
Q ss_pred eEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 001386 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1088)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1088)
+..+.+|. ..|..++++|||..+++|+.|.++++|++-+.
T Consensus 424 ~~~l~gH~---~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 424 VAELLGHT---SRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eeeecCCc---ceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 99999999 88999999999999999999999999998764
No 114
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.1e-24 Score=209.07 Aligned_cols=322 Identities=16% Similarity=0.257 Sum_probs=232.3
Q ss_pred EeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEE
Q 001386 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515 (1088)
Q Consensus 436 ~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 515 (1088)
.+.||...|+.++-..... ++.+++.|.+.+||.+++|+|+.++.||.+.|+++.|+++ +.++++++.|++..||.
T Consensus 143 e~~GHkDGiW~Vaa~~tqp--i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s--~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQP--ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNS--GLLLLTASGDETAHIWK 218 (481)
T ss_pred hhcccccceeeehhhcCCc--ceeecccccceeEEeeccccceeeecccccceeeEEeccc--cceEEEccCCcchHHHH
Confidence 6889999999999876655 8999999999999999999999999999999999999764 56999999999999996
Q ss_pred CCCCCceEEe---cCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCE
Q 001386 516 YDSLGARVDY---DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 592 (1088)
Q Consensus 516 ~~~~~~~~~~---~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 592 (1088)
..-.-..... ..|.+. .....+-.......+....+ ..+| ..++..+.+|. ..|.++.|-..|+.
T Consensus 219 ~av~~~vP~~~a~~~hSsE-eE~e~sDe~~~d~d~~~~sD-~~ti-------RvPl~~ltgH~---~vV~a~dWL~gg~Q 286 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSE-EEEEHSDEHNRDTDSSEKSD-GHTI-------RVPLMRLTGHR---AVVSACDWLAGGQQ 286 (481)
T ss_pred HhhcCcCCCCCCCCCCCch-hhhhcccccccccccccccC-Ccee-------eeeeeeeeccc---cceEehhhhcCcce
Confidence 3211000000 000000 00000000000000000000 1112 23456778877 89999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCC-cccccccccCcceeee
Q 001386 593 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN-SVDAAGVLSDNLRKLS 671 (1088)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~ 671 (1088)
+++++.|.+..+||+++|.++..+.+|.. ..+.++-+|..+++++.+.|.+.++||....- .+..++
T Consensus 287 ~vTaSWDRTAnlwDVEtge~v~~LtGHd~--ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ---------- 354 (481)
T KOG0300|consen 287 MVTASWDRTANLWDVETGEVVNILTGHDS--ELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ---------- 354 (481)
T ss_pred eeeeeccccceeeeeccCceeccccCcch--hccccccCCcceEEEEeccCceeEeccchhhcceeeeec----------
Confidence 99999999999999999999999998865 57888889999999999999999999987320 000000
Q ss_pred ecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEE
Q 001386 672 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA 751 (1088)
Q Consensus 672 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 751 (1088)
T Consensus 355 -------------------------------------------------------------------------------- 354 (481)
T KOG0300|consen 355 -------------------------------------------------------------------------------- 354 (481)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCce
Q 001386 752 LASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK 830 (1088)
Q Consensus 752 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~ 830 (1088)
+|...|+++.|..|.+. ++++ |.+|++||+.+..
T Consensus 355 --------------------------------------------GHtdtVTS~vF~~dd~v-VSgSDDrTvKvWdLrNMR 389 (481)
T KOG0300|consen 355 --------------------------------------------GHTDTVTSVVFNTDDRV-VSGSDDRTVKVWDLRNMR 389 (481)
T ss_pred --------------------------------------------ccccceeEEEEecCCce-eecCCCceEEEeeecccc
Confidence 35566666666655443 3444 6667777776533
Q ss_pred -eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee-----ccccCCeeEEEECCCC--CEEEEEeC
Q 001386 831 -TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-----EGHSKRVTGLVFSDAL--NILVSSGG 902 (1088)
Q Consensus 831 -~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l-----~~h~~~V~~l~~s~dg--~~las~s~ 902 (1088)
.+.++. ...++..++.+. ++.++|.--++..|++||+.... +..+ .+|..-|.|++|+.+. .-|+++|.
T Consensus 390 splATIR-tdS~~NRvavs~-g~~iIAiPhDNRqvRlfDlnG~R-laRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGF 466 (481)
T KOG0300|consen 390 SPLATIR-TDSPANRVAVSK-GHPIIAIPHDNRQVRLFDLNGNR-LARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGF 466 (481)
T ss_pred Ccceeee-cCCccceeEeec-CCceEEeccCCceEEEEecCCCc-cccCCcccccccceeeeeeeccccCcccccccccc
Confidence 344444 456788899998 88899999999999999998543 3333 5799999999998765 34889999
Q ss_pred CCcEEEEEcCC
Q 001386 903 DAQIFVWDVDG 913 (1088)
Q Consensus 903 Dg~i~iwd~~~ 913 (1088)
|+.+.-|++..
T Consensus 467 DR~v~gW~in~ 477 (481)
T KOG0300|consen 467 DRMVAGWKINT 477 (481)
T ss_pred cceeeeeEecc
Confidence 99999999976
No 115
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.5e-23 Score=189.14 Aligned_cols=300 Identities=15% Similarity=0.213 Sum_probs=231.5
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccC------CCc--cc----ceeEeccCCCCEEEEEecCCCCcEEEE
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG------GSD--AR----QQLEIDAHVGNVNDLAFSAPCKQISVI 459 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~------~~~--~~----~~~~~~~h~~~v~~~~~s~d~~~l~l~ 459 (1088)
.-.....|.+++|+|.|.+.|+|+...+++|--... +.. .. ..+.-+-|.+.|.|.+|+|+|+ +++
T Consensus 28 ~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge--lia 105 (350)
T KOG0641|consen 28 ILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE--LIA 105 (350)
T ss_pred EecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC--eEE
Confidence 344678899999999999999999999988864432 111 01 1223456889999999999999 899
Q ss_pred EEeCCCcEEEEeCCCCcee-----EEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEE
Q 001386 460 TCGDDKTIKVWDAVTGSRT-----YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR 534 (1088)
Q Consensus 460 s~s~d~~i~vwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 534 (1088)
+|+.|++|++.-.....+. ..|.-|.+.|..++|...+
T Consensus 106 tgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~------------------------------------- 148 (350)
T KOG0641|consen 106 TGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDP------------------------------------- 148 (350)
T ss_pred ecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCC-------------------------------------
Confidence 9999999999765543322 2444566666666653221
Q ss_pred EEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeE
Q 001386 535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 614 (1088)
Q Consensus 535 ~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~ 614 (1088)
+..|..|++++ .++..|++-|..+|+..+.+.+|. +.|.++ ++-++-.+++|+.|.+|++||++-..++.
T Consensus 149 ---~s~~~il~s~g---agdc~iy~tdc~~g~~~~a~sght---ghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~ 218 (350)
T KOG0641|consen 149 ---ESGGAILASAG---AGDCKIYITDCGRGQGFHALSGHT---GHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVN 218 (350)
T ss_pred ---CcCceEEEecC---CCcceEEEeecCCCCcceeecCCc---ccEEEE-EEecCcEEEccCCCceEEEEeeeccceee
Confidence 12345566654 457779999999999999999999 666655 34467899999999999999999888888
Q ss_pred EEeCCCC-----CCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCcee
Q 001386 615 TIDAGGG-----LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS 689 (1088)
Q Consensus 615 ~~~~~~~-----~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~ 689 (1088)
++....+ ...|.+++..|.|++|++|-.|....+||+..++.++.+..|...|.++.|+
T Consensus 219 ~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfs---------------- 282 (350)
T KOG0641|consen 219 TLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFS---------------- 282 (350)
T ss_pred eccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeC----------------
Confidence 7754311 2357899999999999999999999999999999999999999999999998
Q ss_pred ecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEcc
Q 001386 690 VNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 764 (1088)
Q Consensus 690 ~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~ 764 (1088)
|...++++++.|..|++-|+...-..+...... ..|...+-.+.|.|..-.+++.+.|.++.+|.++
T Consensus 283 ------p~a~yllt~syd~~ikltdlqgdla~el~~~vv--~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 283 ------PGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVV--AEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ------CCceEEEEecccceEEEeecccchhhcCceEEE--EeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 557789999999999999876433333222222 2377888889999999889999999999999753
No 116
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.4e-24 Score=204.84 Aligned_cols=251 Identities=20% Similarity=0.309 Sum_probs=185.9
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCC-----cccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCC
Q 001386 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~-----~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~ 465 (1088)
.+++|...|++++||.||++||+++.|++|++|++..-. +++.. -.-+..+.++|+||-+. ++++.-...
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n----ve~dhpT~V~FapDc~s-~vv~~~~g~ 155 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN----VEYDHPTRVVFAPDCKS-VVVSVKRGN 155 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc----ccCCCceEEEECCCcce-EEEEEccCC
Confidence 488999999999999999999999999999999997532 12211 11124678999999986 556666677
Q ss_pred cEEEEeCCC---CceeEE--------e-ccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceE
Q 001386 466 TIKVWDAVT---GSRTYS--------F-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCT 533 (1088)
Q Consensus 466 ~i~vwd~~~---~~~~~~--------~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 533 (1088)
++++|-+.. |..... | +.|...+..+.. .+++.+|++++.|..|.+|+++ ++....+......-+
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~ 232 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNY 232 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecC-Cceeeeecccccccc
Confidence 899997643 222111 1 235556665554 5678999999999999999998 777777777777777
Q ss_pred EEEEccCCCEEEEEeeCCCCceeEEEEeCCC---C-----ceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEE
Q 001386 534 RMAYSANGRRLFSCGTSKEGESFLVEWNESE---G-----AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 605 (1088)
Q Consensus 534 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~---~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iw 605 (1088)
..+.||+|+++++++...+ |.+|.+-- | ..+..+.||. ..|..++|+++..++++.+.||++++|
T Consensus 233 ~aavSP~GRFia~~gFTpD----VkVwE~~f~kdG~fqev~rvf~LkGH~---saV~~~aFsn~S~r~vtvSkDG~wriw 305 (420)
T KOG2096|consen 233 DAAVSPDGRFIAVSGFTPD----VKVWEPIFTKDGTFQEVKRVFSLKGHQ---SAVLAAAFSNSSTRAVTVSKDGKWRIW 305 (420)
T ss_pred ceeeCCCCcEEEEecCCCC----ceEEEEEeccCcchhhhhhhheeccch---hheeeeeeCCCcceeEEEecCCcEEEe
Confidence 8899999999999988555 99998642 2 2345677877 999999999999999999999999999
Q ss_pred EcCC-------CeeeEEEe--CCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcc
Q 001386 606 DMNK-------VQLLTTID--AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 657 (1088)
Q Consensus 606 d~~~-------~~~~~~~~--~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 657 (1088)
|.+- .+.+.... .+.....-..++++|+|..||.... ..+.++..++++..
T Consensus 306 dtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~ 365 (420)
T KOG2096|consen 306 DTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDY 365 (420)
T ss_pred eccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccc
Confidence 9753 22222221 1111122347999999998887765 47888887766443
No 117
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.2e-21 Score=212.11 Aligned_cols=280 Identities=16% Similarity=0.213 Sum_probs=225.5
Q ss_pred ccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCE
Q 001386 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1088)
Q Consensus 331 ~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~ 410 (1088)
..|+..-+.++|.|+|. ++.+++.||.|++|+..+-..... ...-++..|.+++.. +.+
T Consensus 10 yaht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~------------------ti~~~g~~v~~ia~~--s~~ 68 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPE------------------TIDISGELVSSIACY--SNH 68 (933)
T ss_pred hhccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCc------------------hhhccCceeEEEeec--ccc
Confidence 37888999999999999 788889999999999877632110 012267778777764 569
Q ss_pred EEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEE
Q 001386 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 490 (1088)
Q Consensus 411 las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 490 (1088)
|++|+.+++|.+|...+++.-. .+...+-++.+++|+.+|+ +++.||.|-.|++-+..++.....+++|.++|.+
T Consensus 69 f~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred eEEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceee
Confidence 9999999999999999887543 2445667899999999999 8999999999999999999999999999999999
Q ss_pred EeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCC--------CCceEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001386 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 562 (1088)
+.++| ++.+|++.+.||.|++||+.++.....+..- ...+..++|+|+|..+++.+. ++.|.+|+.
T Consensus 144 l~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~r 217 (933)
T KOG1274|consen 144 LSYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYSR 217 (933)
T ss_pred eeEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEcc
Confidence 99954 6679999999999999999987765544332 235678999999776666654 556999999
Q ss_pred CCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC
Q 001386 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1088)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1088)
.++.....+.....+ ..+..+.|+|+|.||++++.||.|.|||.++-.. |.....|.+++|.|+.+.+-....
T Consensus 218 ~~we~~f~Lr~~~~s-s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~ 290 (933)
T KOG1274|consen 218 KGWELQFKLRDKLSS-SKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITA 290 (933)
T ss_pred CCceeheeecccccc-cceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEee
Confidence 999998888765522 3499999999999999999999999999987222 333456899999999887766655
Q ss_pred CCcEEEE
Q 001386 643 ENRIKIL 649 (1088)
Q Consensus 643 dg~i~iw 649 (1088)
.|...+|
T Consensus 291 ~g~~~~~ 297 (933)
T KOG1274|consen 291 LGTLGVS 297 (933)
T ss_pred ccccccC
Confidence 5555444
No 118
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.2e-25 Score=218.42 Aligned_cols=284 Identities=14% Similarity=0.222 Sum_probs=233.1
Q ss_pred EeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEE
Q 001386 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515 (1088)
Q Consensus 436 ~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 515 (1088)
.+.||...|.+++=+|..-. .+++|+.||.|++||+.+..++.++..|.+.|..+++.. ..+++++.|.+|+.|-
T Consensus 61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 46799999999999998732 699999999999999999999999999999999999854 4799999999999998
Q ss_pred CCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEE-
Q 001386 516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL- 594 (1088)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~- 594 (1088)
++.. ...++. ....+..+.-+..+..++++|. .|.|||.....+++.+.-.. +.|.++.|+|....++
T Consensus 136 ~~~~-p~~til-g~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~---Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 136 IDGP-PLHTIL-GKSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGA---DSISSVKFNPVETSILA 204 (433)
T ss_pred ccCC-cceeee-ccccccccccccccccccccCc------eeeecccccCCccceeecCC---CceeEEecCCCcchhee
Confidence 7763 222222 2234555666666777888764 39999999888888888766 7899999999876555
Q ss_pred EEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCC-CcccccccccCcceeeeec
Q 001386 595 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVN 673 (1088)
Q Consensus 595 ~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~ 673 (1088)
+++.|+.|.+||++++.++..+...-. -+.++|+|++-.+++|+.|..++.+|+... .++....+|...|..+.|+
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs 281 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS 281 (433)
T ss_pred eeccCCceEEEecccCCccceeeeecc---ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccC
Confidence 566999999999999999988765543 478999999989999999999999999865 5666778888888888887
Q ss_pred CCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEec
Q 001386 674 PISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA 753 (1088)
Q Consensus 674 p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 753 (1088)
|-|+-+++|+.|.+|+++....+.+...+... ....|.++.||.|.+++++|+
T Consensus 282 ----------------------ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-----RMq~V~~Vk~S~Dskyi~SGS 334 (433)
T KOG0268|consen 282 ----------------------PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-----RMQHVFCVKYSMDSKYIISGS 334 (433)
T ss_pred ----------------------CCcchhccccccceEEEeecCCCcchhhhhHh-----hhheeeEEEEeccccEEEecC
Confidence 55788999999999999998765554443322 345789999999999999999
Q ss_pred cccceEEEEccC
Q 001386 754 SNGVHLMWRWPR 765 (1088)
Q Consensus 754 ~dg~v~iw~~~~ 765 (1088)
.|+.|++|.-..
T Consensus 335 dd~nvRlWka~A 346 (433)
T KOG0268|consen 335 DDGNVRLWKAKA 346 (433)
T ss_pred CCcceeeeecch
Confidence 999999998543
No 119
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.3e-23 Score=202.51 Aligned_cols=244 Identities=17% Similarity=0.250 Sum_probs=204.4
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEE
Q 001386 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vw 470 (1088)
.+..|.++|+++|.+ |.++|+|+.|-+|+|||+.....+. .+-.|.+.|+++.|.++-..-.|++|+.||.|.+|
T Consensus 38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 367899999999996 9999999999999999999887665 56789999999999988642258999999999999
Q ss_pred eCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeC
Q 001386 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1088)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 550 (1088)
+...-.++.++++|.+.|+.++++|++ ++.++.+.|+.++.||+-.++.-........ ...+.|+|.|.+++.++.
T Consensus 113 ~~~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~~~- 188 (362)
T KOG0294|consen 113 RVGSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVSGR- 188 (362)
T ss_pred EcCCeEEeeeecccccccceeEecCCC--ceEEEEcCCceeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEEec-
Confidence 999999999999999999999998754 7899999999999999988877665554432 334899999999888874
Q ss_pred CCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEE
Q 001386 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1088)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1088)
..|-+|.+.+......+.... .+.++.|. ++..+++|++|+.|.+||..+..+...+..|.. .|..+.+
T Consensus 189 ----~~i~i~q~d~A~v~~~i~~~~----r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~--RVK~i~~ 257 (362)
T KOG0294|consen 189 ----NKIDIYQLDNASVFREIENPK----RILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN--RVKDIAS 257 (362)
T ss_pred ----cEEEEEecccHhHhhhhhccc----cceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchh--heeeeEE
Confidence 348999988776665554332 45666664 567899999999999999999999999887754 6787774
Q ss_pred --ecCCCEEEEEeCCCcEEEEeCCCC
Q 001386 631 --NKNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 631 --s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
.|++.+|++++.||.|++||+...
T Consensus 258 ~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 258 YTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EecCCceEEEEeccCceEEEEEcccc
Confidence 467899999999999999999866
No 120
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=7.4e-23 Score=229.76 Aligned_cols=251 Identities=12% Similarity=0.171 Sum_probs=189.1
Q ss_pred EeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCC-CCcEEEEEEeCCCcEEEEeCCCCc--------eeEEeccC
Q 001386 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS--------RTYSFEGH 484 (1088)
Q Consensus 414 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d-~~~l~l~s~s~d~~i~vwd~~~~~--------~~~~~~~~ 484 (1088)
|+.++.|++|+..... ....+.+|.+.|.+++|+|+ +. +|++|+.|++|++||+.++. ++..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~---~v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP---PVIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCc---eEEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 5667889999987654 34478899999999999997 56 89999999999999998642 34567899
Q ss_pred CccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC
Q 001386 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1088)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 564 (1088)
...|.+++|+|.. ..++++++.|++|++||+++......+. +...|.+++|+|+|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g-~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMN-YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCC-CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 9999999997753 2356799999999999999888766664 4568999999999999998865 45699999999
Q ss_pred CceeEEEecccccc--ccEEEEEEeCCCCEEEEEeCCC----cEEEEEcCC-CeeeEEEeCCCCCCCCceEEEecCCCEE
Q 001386 565 GAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDH----VIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLL 637 (1088)
Q Consensus 565 ~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~s~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l 637 (1088)
++.+..+.+|.... ..+....|++++.++++++.|+ .|+|||++. ++++..+..+.....+......++|.++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 99999999887211 1122334568999999988764 799999985 6677666555443323333344568899
Q ss_pred EEEeCCCcEEEEeCCCCCcccccc-cccCcceeeeecCC
Q 001386 638 AVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPI 675 (1088)
Q Consensus 638 ~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~ 675 (1088)
++|+.|+.|++|++..+.....-. .+..+...+++.|.
T Consensus 279 lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred EEEECCCeEEEEEccCCcEEeecccccCCCccceEEccc
Confidence 999999999999998663221111 13345556666653
No 121
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.6e-24 Score=200.99 Aligned_cols=251 Identities=20% Similarity=0.330 Sum_probs=208.7
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecC--CCCcEEEEEEeCCCcEEE
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKV 469 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~--d~~~l~l~s~s~d~~i~v 469 (1088)
...|+..|..+...--|++||+++.|++|+|+.+..+.....+.+|.||.++|+.++|.. -|. +|++++.||.|.|
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVIi 84 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEEE
Confidence 567999999988888899999999999999999998877677889999999999999977 677 8999999999999
Q ss_pred EeCCCCce--eEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCC---ceEEecCCCCceEEEEEccC---C
Q 001386 470 WDAVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG---ARVDYDAPGLGCTRMAYSAN---G 541 (1088)
Q Consensus 470 wd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~---g 541 (1088)
|.-.+|+- .+....|...|++++|.|..-|-.|++++.||.|.+.+++... .......|.-.|++++|.|. |
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 99877743 4566789999999999999999999999999999999988762 23455677788999999986 5
Q ss_pred -----------CEEEEEeeCCCCceeEEEEeCCCCc--eeEEEeccccccccEEEEEEeCCC----CEEEEEeCCCcEEE
Q 001386 542 -----------RRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDDHVIKI 604 (1088)
Q Consensus 542 -----------~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~s~dg~i~i 604 (1088)
+.|++++. +..|.||+...++ ..+++.+|. +.|+.++|.|.- .+++++++||++.|
T Consensus 165 ~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~---dwVRDVAwaP~~gl~~s~iAS~SqDg~viI 237 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHK---DWVRDVAWAPSVGLPKSTIASCSQDGTVII 237 (299)
T ss_pred cccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcc---hhhhhhhhccccCCCceeeEEecCCCcEEE
Confidence 56888876 5569999988753 445577777 999999999974 57999999999999
Q ss_pred EEcCCC--eeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCC
Q 001386 605 WDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 605 wd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
|..... ....++ .+.....+..+.||..|+.|++++.|+.+.+|.-.
T Consensus 238 wt~~~e~e~wk~tl-l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 238 WTKDEEYEPWKKTL-LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EEecCccCcccccc-cccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 987632 111111 11223458899999999999999999999999765
No 122
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.5e-21 Score=214.58 Aligned_cols=516 Identities=16% Similarity=0.168 Sum_probs=328.1
Q ss_pred cCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCc-eEEEEEecCCeEEEEECC
Q 001386 439 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYD 517 (1088)
Q Consensus 439 ~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~ 517 (1088)
+-...-....|++|++. ++.. .+..|.||...+|.++..+.+|..++..+.+.+.... .++++++.||.|++||..
T Consensus 14 g~n~~~~~avfSnD~k~--l~~~-~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 14 GRNGNKSPAVFSNDAKF--LFLC-TGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred cccceecccccccCCcE--EEEe-eCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 33333345579999994 4433 3668999999999999999999999999999877654 678899999999999999
Q ss_pred CCCceEEecCCCCceEEEEEcc---CCCEEEEEeeCCCCceeEEEEeCCCCceeE-----EEecccc----ccccEEEEE
Q 001386 518 SLGARVDYDAPGLGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESEGAIKR-----TYQGLQL----QHNSVSVVH 585 (1088)
Q Consensus 518 ~~~~~~~~~~~~~~v~~~~~s~---~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~-----~~~~~~~----~~~~v~~~~ 585 (1088)
.......+..... +..+.+.| +-...+..+. +....+............ ++..+.. ....-.++.
T Consensus 91 ~~~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~--~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~ 167 (792)
T KOG1963|consen 91 DGELLKTFDNNLP-VHALVYKPAQADISANVYVSV--EDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIV 167 (792)
T ss_pred CcEEEEEEecCCc-eeEEEechhHhCccceeEeec--ccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEE
Confidence 8887777665443 22333222 1111221111 001111111111111111 1111110 001135677
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCCeeeEEE-e-CCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccc
Q 001386 586 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-D-AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL 663 (1088)
Q Consensus 586 ~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 663 (1088)
+++.|.+....- +..+.+|...++...... . ...+...+++.+++|+++++|++..||.|.+|.--.. ...
T Consensus 168 ~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~------~~~ 240 (792)
T KOG1963|consen 168 DNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS------SDD 240 (792)
T ss_pred EcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc------ccc
Confidence 777776665554 456888988775511111 0 0122234789999999999999999999999975421 000
Q ss_pred cCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEe
Q 001386 664 SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN 743 (1088)
Q Consensus 664 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 743 (1088)
.... ++--| |...|.+++|+
T Consensus 241 ~~t~-----------------------------------------t~lHW-------------------H~~~V~~L~fS 260 (792)
T KOG1963|consen 241 SETC-----------------------------------------TLLHW-------------------HHDEVNSLSFS 260 (792)
T ss_pred cccc-----------------------------------------eEEEe-------------------cccccceeEEe
Confidence 0000 11112 55789999999
Q ss_pred cCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEE
Q 001386 744 NGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVIS 822 (1088)
Q Consensus 744 ~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~ 822 (1088)
++|.+|++|+.+|.+.+|.+.+++. .+ +|. -..+|..+.+|||+.+.+... |+.|.
T Consensus 261 ~~G~~LlSGG~E~VLv~Wq~~T~~k------------------qf---LPR--Lgs~I~~i~vS~ds~~~sl~~~DNqI~ 317 (792)
T KOG1963|consen 261 SDGAYLLSGGREGVLVLWQLETGKK------------------QF---LPR--LGSPILHIVVSPDSDLYSLVLEDNQIH 317 (792)
T ss_pred cCCceEeecccceEEEEEeecCCCc------------------cc---ccc--cCCeeEEEEEcCCCCeEEEEecCceEE
Confidence 9999999999999999998766543 11 111 577899999999999887775 99999
Q ss_pred EEEcCCceeEEEecCC-----------CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeec-----------c
Q 001386 823 LYIVMTFKTILTIMPP-----------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-----------G 880 (1088)
Q Consensus 823 iwd~~~~~~~~~~~~~-----------~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~-----------~ 880 (1088)
+....+.+...++.+. .+-.+.++++| .-+.++..+..|.|.+||+-+.+.+..+. .
T Consensus 318 li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n 396 (792)
T KOG1963|consen 318 LIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVN 396 (792)
T ss_pred EEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcce
Confidence 9988766655554432 23357789999 67788888899999999998876554442 1
Q ss_pred ccCCeeEEEECCCCCEEEEEeC--------CC--cEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCC-EEEE
Q 001386 881 HSKRVTGLVFSDALNILVSSGG--------DA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT-RFLL 949 (1088)
Q Consensus 881 h~~~V~~l~~s~dg~~las~s~--------Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~-~l~~ 949 (1088)
+.-.+++++.+-.|.+++|.-. || .+++|-...........-.....|.. ..+..+.+++-.. .+++
T Consensus 397 ~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~--~~vat~~~~~~rs~~~vt 474 (792)
T KOG1963|consen 397 IQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGN--AFVATIFLNPTRSVRCVT 474 (792)
T ss_pred eEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCc--eeEEEEEecCcccceeEE
Confidence 2335788888889999998742 33 47889887654333222222222322 1233344444333 5666
Q ss_pred -EeCCeEEEEEcCcceeee---------eeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCC-CceEEEecccccc
Q 001386 950 -VHETHLAIYEAEELTCLK---------QWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN-LEVQCRILSTAYL 1018 (1088)
Q Consensus 950 -~~d~~i~vwd~~~~~~~~---------~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~~~~ 1018 (1088)
+.|+.+++|-+...+-+. ..-..|..++++++||.||..|+ .+.|++|.+||..+ .++.+......+.
T Consensus 475 a~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~~~~~~~~~ 553 (792)
T KOG1963|consen 475 ASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTKNELLCTEGSRNWP 553 (792)
T ss_pred eccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE-EecCCEEEEecCCChhhhhccccccccc
Confidence 689999999884332221 11223688999999999997666 55788999999999 5665554422221
Q ss_pred CCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCCc
Q 001386 1019 RPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1063 (1088)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~~~~ 1063 (1088)
... . ...+-.+.+ ..+.....+.+.+|++.....-|
T Consensus 554 ~~~-----~--~~~~~~~~~--~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 554 IAE-----L--LFTAQTQND--GALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred hHh-----H--hhhcccccc--cceeeccCceEehHhhhhhheec
Confidence 111 1 111222322 33445567899999999988888
No 123
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=2e-23 Score=221.82 Aligned_cols=239 Identities=17% Similarity=0.260 Sum_probs=202.3
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEE-EEecCCCCcEEEEEEeCCCcEEEE
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND-LAFSAPCKQISVITCGDDKTIKVW 470 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~-~~~s~d~~~l~l~s~s~d~~i~vw 470 (1088)
+.+|...|..+++.+ +..++++|.||++++|+-..++.+.. ..+.+|.+-|.. ++|.+..+. .+++|+.|++|.+|
T Consensus 10 l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~-~~~~~~~g~i~~~i~y~e~~~~-~l~~g~~D~~i~v~ 86 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLET-HAFEGPKGFIANSICYAESDKG-RLVVGGMDTTIIVF 86 (745)
T ss_pred eccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccc-eecccCcceeeccceeccccCc-ceEeecccceEEEE
Confidence 889999999999775 45889999999999999877664442 357778888877 888763332 59999999999999
Q ss_pred eCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeC
Q 001386 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1088)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 550 (1088)
...+..++..+.+|...|+++.. ..++ .+++||.|.++++| ..++....+.+|...|++++.-|++ .+++|+.
T Consensus 87 ~~~~~~P~~~LkgH~snVC~ls~--~~~~-~~iSgSWD~TakvW--~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsa- 159 (745)
T KOG0301|consen 87 KLSQAEPLYTLKGHKSNVCSLSI--GEDG-TLISGSWDSTAKVW--RIGELVYSLQGHTASVWAVASLPEN-TYVTGSA- 159 (745)
T ss_pred ecCCCCchhhhhccccceeeeec--CCcC-ceEecccccceEEe--cchhhhcccCCcchheeeeeecCCC-cEEeccC-
Confidence 99999999999999999999975 3343 49999999999999 4556666789999999999999988 6677765
Q ss_pred CCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEE
Q 001386 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1088)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1088)
+..|++|.- ++.++++.+|. +.|+.+++-++ ..+++++.||.|++|++ +|+.+....+|. ..++++..
T Consensus 160 ---DKtIklWk~--~~~l~tf~gHt---D~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ght--n~vYsis~ 227 (745)
T KOG0301|consen 160 ---DKTIKLWKG--GTLLKTFSGHT---DCVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHT--NFVYSISM 227 (745)
T ss_pred ---cceeeeccC--Cchhhhhccch---hheeeeEEecC-CCeEeecCCceEEEEec-cCceeeeeeccc--eEEEEEEe
Confidence 556999986 88899999998 99999999886 46899999999999999 778888777664 46899998
Q ss_pred ecCCCEEEEEeCCCcEEEEeCC
Q 001386 631 NKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 631 s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
..++..+++++.|++++||+..
T Consensus 228 ~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 228 ALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred cCCCCeEEEecCCceEEEeecC
Confidence 8888999999999999999876
No 124
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=1.6e-22 Score=192.65 Aligned_cols=321 Identities=12% Similarity=0.188 Sum_probs=234.1
Q ss_pred ccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-CCC
Q 001386 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGS 409 (1088)
Q Consensus 331 ~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~-dg~ 409 (1088)
.-|.+.|+++.+.|...+++.+|+.||.|.+||+++.......-+ +-+ ..|. ..+..-.+|.-.|..+.|-| |..
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~k-~~c~--v~~~h~~~Hky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IAK-HKCI--VAKQHENGHKYAISSAIWYPIDTG 115 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-eeh-eeee--ccccCCccceeeeeeeEEeeecCc
Confidence 467789999999997666899999999999999987542110000 000 0121 12223567999999999999 888
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCC-cEEEEEEeCCCcEEEEeCCCCceeEEeccCCccE
Q 001386 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~-~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v 488 (1088)
.+.+++.|.+++|||+++-+... .+ ...+.|.+-++||-.. .-++++|..|-.|++.|+.+|.+.+++.||.+.|
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~v 191 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGV 191 (397)
T ss_pred eeecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCce
Confidence 99999999999999999865433 23 2456788888888543 3367788888899999999999999999999999
Q ss_pred EEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCcee
Q 001386 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1088)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1088)
.++.|+|..+ ..|++|+.||.|++||++... +..++.|...++..
T Consensus 192 laV~Wsp~~e-~vLatgsaDg~irlWDiRras----------------------------------gcf~~lD~hn~k~~ 236 (397)
T KOG4283|consen 192 LAVEWSPSSE-WVLATGSADGAIRLWDIRRAS----------------------------------GCFRVLDQHNTKRP 236 (397)
T ss_pred EEEEeccCce-eEEEecCCCceEEEEEeeccc----------------------------------ceeEEeecccCccC
Confidence 9999988744 689999999999999997421 12444454444433
Q ss_pred EEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEE---ecCCCEEEEEeCCCc
Q 001386 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF---NKNGTLLAVIANENR 645 (1088)
Q Consensus 569 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~---s~~~~~l~~~~~dg~ 645 (1088)
..++....|.+.++.++|..++.++++.+.|..+++|+..+|+....-.+.-....-...++ +.+...++..-.++.
T Consensus 237 p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~ 316 (397)
T KOG4283|consen 237 PILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGS 316 (397)
T ss_pred ccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCe
Confidence 33433334458999999999999999999999999999998764322111100000111111 334445555556789
Q ss_pred EEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceecccc
Q 001386 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1088)
Q Consensus 646 i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 716 (1088)
+.++++-++..+..+..|...+.+.++. ++-....++..|+.+..|-..
T Consensus 317 lall~~~sgs~ir~l~~h~k~i~c~~~~----------------------~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 317 LALLNLLEGSFVRRLSTHLKRINCAAYR----------------------PDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred EEEEEccCceEEEeeecccceeeEEeec----------------------CchhhhhccccCCcccccccc
Confidence 9999999999999999987778777765 556677888888998888753
No 125
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=5.8e-23 Score=208.88 Aligned_cols=242 Identities=17% Similarity=0.189 Sum_probs=197.3
Q ss_pred eeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCc
Q 001386 376 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ 455 (1088)
Q Consensus 376 ~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~ 455 (1088)
.+|.+.++....+..++ .++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+. .+.+|-..|+|+.|+.||.
T Consensus 64 ~vw~i~k~~~~~q~~v~---Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs- 136 (476)
T KOG0646|consen 64 HVWEILKKDQVVQYIVL---PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS- 136 (476)
T ss_pred cccccCchhhhhhhccc---ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc-
Confidence 45555555544433333 3589999999999999999999999999999998777 6789999999999999999
Q ss_pred EEEEEEeCCCcEEEEeCC---------CCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEec
Q 001386 456 ISVITCGDDKTIKVWDAV---------TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 526 (1088)
Q Consensus 456 l~l~s~s~d~~i~vwd~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 526 (1088)
+++|||.||.|.+|++. +-++++.|..|.-+|+++...+.+-..+++++|.|.++++||+..+.....+.
T Consensus 137 -~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~ 215 (476)
T KOG0646|consen 137 -HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT 215 (476)
T ss_pred -EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe
Confidence 89999999999999753 34677899999999999998766556799999999999999999887776665
Q ss_pred CCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC----------------CceeEEEeccccccccEEEEEEeCCC
Q 001386 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE----------------GAIKRTYQGLQLQHNSVSVVHFDTAK 590 (1088)
Q Consensus 527 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~----------------~~~~~~~~~~~~~~~~v~~~~~~~~~ 590 (1088)
.+ ..+.+++.+|-++.+++|+. ++.|.+.++.. +..+..+.||.. ...|+|++.+-||
T Consensus 216 fp-~si~av~lDpae~~~yiGt~----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~-~~~ITcLais~Dg 289 (476)
T KOG0646|consen 216 FP-SSIKAVALDPAERVVYIGTE----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHEN-ESAITCLAISTDG 289 (476)
T ss_pred cC-CcceeEEEcccccEEEecCC----cceEEeeehhcCCcccccccccccccccceeeeeccccC-CcceeEEEEecCc
Confidence 44 47889999999999999976 45577665432 234555667761 1399999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecC
Q 001386 591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1088)
Q Consensus 591 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1088)
..|++|+.||+|+|||+.+.++++++... ..+|+.+.+.|-
T Consensus 290 tlLlSGd~dg~VcvWdi~S~Q~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 290 TLLLSGDEDGKVCVWDIYSKQCIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred cEEEeeCCCCCEEEEecchHHHHHHHhhh--ccccceeEeecc
Confidence 99999999999999999999999888732 335888888664
No 126
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.1e-22 Score=195.60 Aligned_cols=299 Identities=15% Similarity=0.196 Sum_probs=224.8
Q ss_pred CCchhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeE
Q 001386 321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1088)
Q Consensus 321 ~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~ 400 (1088)
++|..+..+|.... -.|+.||+.|. +||+|..||.|.|||+.|...-+. +.+|..+|.
T Consensus 12 ~~PEel~~tld~~~--a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~-------------------lsaH~~pi~ 69 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL--AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARM-------------------LSAHVRPIT 69 (405)
T ss_pred cChHhhceeccCCc--cceEEeccCcc-eeeeeccCCcEEEEEccccchhhh-------------------hhcccccee
Confidence 56777778886443 78999999998 799999999999999999875544 888999999
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001386 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1088)
Q Consensus 401 ~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~ 480 (1088)
+++||+||++|+++|.|..|.+||+..|.+++.+ ...++|+.+.|.|..++..+++ -.+..-.+-++..++.. .
T Consensus 70 sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va~-~~~~sp~vi~~s~~~h~-~ 143 (405)
T KOG1273|consen 70 SLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVAT-IMEESPVVIDFSDPKHS-V 143 (405)
T ss_pred EEEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEEE-EecCCcEEEEecCCcee-e
Confidence 9999999999999999999999999999877643 2567999999999887744444 33444455555442211 1
Q ss_pred ec-cCCccEEEE--eeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCC-CceEEEEEccCCCEEEEEeeCCCCcee
Q 001386 481 FE-GHGAPVYSL--CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESF 556 (1088)
Q Consensus 481 ~~-~~~~~v~~~--~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~~~~~~~~ 556 (1088)
+. ...+..+.. +-...+.|+++++|...|.+.++|..+.+++..+.... ..|..+.|+..|+.++..+. +..
T Consensus 144 Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRv 219 (405)
T KOG1273|consen 144 LPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRV 219 (405)
T ss_pred ccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----Cce
Confidence 11 111111111 11235678899999999999999999998888777666 68999999999999999875 667
Q ss_pred EEEEeCCCC-------ce--eEEEeccccccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCCCCCCc
Q 001386 557 LVEWNESEG-------AI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENP 626 (1088)
Q Consensus 557 i~iwd~~~~-------~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 626 (1088)
|+.|+.+.- +. .+.++..- .+-.-.+++|+.+|.++++++ ....++||....|.+++.+.+..+. ...
T Consensus 220 IR~ye~~di~~~~r~~e~e~~~K~qDvV-Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-~l~ 297 (405)
T KOG1273|consen 220 IRTYEISDIDDEGRDGEVEPEHKLQDVV-NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-ELL 297 (405)
T ss_pred EEEEehhhhcccCccCCcChhHHHHHHH-hhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh-hee
Confidence 999987621 11 11111110 123456789999999998876 4567999999999999999876542 467
Q ss_pred eEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 001386 627 RICFNKNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
.+.|+|-...+++. ..|.+++|.....
T Consensus 298 DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 298 DVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred ecccccceeeeeec-cCCceEEEEeecc
Confidence 88999988777777 6789999987643
No 127
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=2.4e-23 Score=212.07 Aligned_cols=287 Identities=14% Similarity=0.183 Sum_probs=228.5
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEE
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 411 (1088)
.|..-|.++++|...+ .+.||+. |-|+|||+....... ++ ...-.....+.|+++.++|||+.|
T Consensus 417 ~HGEvVcAvtIS~~tr-hVyTgGk-gcVKVWdis~pg~k~--Pv------------sqLdcl~rdnyiRSckL~pdgrtL 480 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTR-HVYTGGK-GCVKVWDISQPGNKS--PV------------SQLDCLNRDNYIRSCKLLPDGRTL 480 (705)
T ss_pred ccCcEEEEEEecCCcc-eeEecCC-CeEEEeeccCCCCCC--cc------------ccccccCcccceeeeEecCCCceE
Confidence 5666788899998888 5788877 889999997542111 00 000012245789999999999999
Q ss_pred EEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEE
Q 001386 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1088)
Q Consensus 412 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 491 (1088)
++|+.-.++.|||+..... +...++..-.-...+++.+||.+ +.+++..||.|.|||+.+...++.|.||...+.||
T Consensus 481 ivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascI 557 (705)
T KOG0639|consen 481 IVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI 557 (705)
T ss_pred EeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCCCCceeE
Confidence 9999999999999987542 22223444445677899999999 88999999999999999999999999999999999
Q ss_pred eeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEE
Q 001386 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1088)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1088)
.+ ++||..|-+|+-|.+||.||++.+........ ...|.++..+|++.++++|-. ++.+.+.... +.....+
T Consensus 558 di--s~dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMe----ns~vevlh~s-kp~kyql 629 (705)
T KOG0639|consen 558 DI--SKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGME----NSNVEVLHTS-KPEKYQL 629 (705)
T ss_pred Ee--cCCCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecc----cCcEEEEecC-Cccceee
Confidence 88 66889999999999999999998776554332 347889999999999999975 3346666543 3333444
Q ss_pred eccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeC
Q 001386 572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1088)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1088)
..|. ..|.++.|.+.|+++++.+.|..+..|...-|..+...+.. ..|.++.+|.|.+++++|+.|....||.+
T Consensus 630 hlhe---ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~---SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 630 HLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cccc---cEEEEEEecccCceeeecCchhhhhhccCccccceeecccc---CcceeeeeccCceEEEecCCCcceEEEEE
Confidence 4455 88999999999999999999999999999988887776543 35899999999999999999998888865
No 128
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=3.6e-21 Score=210.56 Aligned_cols=279 Identities=18% Similarity=0.237 Sum_probs=202.7
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEE-EEEeCCCcEEEEeCCCCCcccccccccCccee
Q 001386 591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRK 669 (1088)
Q Consensus 591 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 669 (1088)
..+++++.|+.|++||+.+++.+..+..+.. +..++|+|+++.+ ++++.++.|++||..+++....+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~---~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-------- 70 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR---PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP-------- 70 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC---CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc--------
Confidence 5678889999999999999998888875432 5779999999876 566778899999877542211000
Q ss_pred eeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceE
Q 001386 670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 749 (1088)
Q Consensus 670 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 749 (1088)
T Consensus 71 -------------------------------------------------------------------------------- 70 (300)
T TIGR03866 71 -------------------------------------------------------------------------------- 70 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe--CCcEEEEEcC
Q 001386 750 FALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVM 827 (1088)
Q Consensus 750 ~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--dg~i~iwd~~ 827 (1088)
....+..++++|+++.++++. ++.+++||+.
T Consensus 71 -----------------------------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~ 103 (300)
T TIGR03866 71 -----------------------------------------------SGPDPELFALHPNGKILYIANEDDNLVTVIDIE 103 (300)
T ss_pred -----------------------------------------------CCCCccEEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 000123466777777665543 6788999988
Q ss_pred CceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC-eEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEE-eCCCc
Q 001386 828 TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS-GGDAQ 905 (1088)
Q Consensus 828 ~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg-~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~-s~Dg~ 905 (1088)
+++.+..+.. ...+.+++|+| +++++++++.++ .+.+||..+++.+..+.. ...+.+++|+|+|++|+.+ ..++.
T Consensus 104 ~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~ 180 (300)
T TIGR03866 104 TRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGT 180 (300)
T ss_pred CCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCE
Confidence 8777776652 33467899999 888998888775 577889998877665542 2346789999999988654 46899
Q ss_pred EEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE--EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEe
Q 001386 906 IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQATFS 983 (1088)
Q Consensus 906 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~--~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs 983 (1088)
|++||+.+++............+ ........++|+||++++++ +.++.+.+||..+++.+.... +...+.+++|+
T Consensus 181 v~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~ 257 (300)
T TIGR03866 181 VSVIDVATRKVIKKITFEIPGVH-PEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--VGQRVWQLAFT 257 (300)
T ss_pred EEEEEcCcceeeeeeeecccccc-cccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--eCCCcceEEEC
Confidence 99999998754332221111101 00112457899999998655 456789999999988876543 34578899999
Q ss_pred eCCCEEEEEe-CCCcEEEEEcCCCceEEEec
Q 001386 984 CDCRMVFTSF-VDGTLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 984 ~dg~~l~s~s-~dg~v~vwd~~~~~~~~~~~ 1013 (1088)
|||++|++++ .+|.|.+||+.+++.+.++.
T Consensus 258 ~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 258 PDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 9999998764 68999999999999988886
No 129
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.2e-22 Score=205.69 Aligned_cols=287 Identities=14% Similarity=0.216 Sum_probs=233.3
Q ss_pred CCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCC-EEEE
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS-LLGV 413 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~-~las 413 (1088)
+.|++|.|+|.-. +|.+++.|++++||.+.........+ +.--..+|.+.+|.|+|. .+++
T Consensus 214 ~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS-----------------~~l~~fPi~~a~f~p~G~~~i~~ 275 (514)
T KOG2055|consen 214 GGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQS-----------------IHLEKFPIQKAEFAPNGHSVIFT 275 (514)
T ss_pred CCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhhee-----------------eeeccCccceeeecCCCceEEEe
Confidence 4899999999988 89999999999999997553222111 112457899999999999 8899
Q ss_pred EeCCCEEEEEEccCCCcccceeEeccCC-CCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEe
Q 001386 414 AYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 492 (1088)
Q Consensus 414 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 492 (1088)
++....++.||+.+.+..+ +..+.++. ..+.....+++++ +|+..+..|.|.+.-..+++.+.+++ -.+.|..++
T Consensus 276 s~rrky~ysyDle~ak~~k-~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~ 351 (514)
T KOG2055|consen 276 SGRRKYLYSYDLETAKVTK-LKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFT 351 (514)
T ss_pred cccceEEEEeecccccccc-ccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeEE
Confidence 9999999999999987543 33455554 3567788999999 89999999999999999999998887 567899999
Q ss_pred eeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCC-ceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC------C
Q 001386 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE------G 565 (1088)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~------~ 565 (1088)
|+ .+++.|++.+.+|.|.+||++...+...+...+. .-++++.|++|.++|+|+. .+.|.|||..+ .
T Consensus 352 fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~P 425 (514)
T KOG2055|consen 352 FS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTNP 425 (514)
T ss_pred Ee--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCCC
Confidence 85 6778999999999999999999988877766554 4568899999999999975 67799999653 4
Q ss_pred ceeEEEeccccccccEEEEEEeCCCCEEEEEe--CCCcEEEEEcCCCeeeEEEeCC-CCCCCCceEEEecCCCEEEEEeC
Q 001386 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIAN 642 (1088)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~ 642 (1088)
+++..+.... ..|+.+.|+++.+.++.+| .+..+++-.+.+......++.. .....++|++|||.+.++|+|..
T Consensus 426 kPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe 502 (514)
T KOG2055|consen 426 KPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE 502 (514)
T ss_pred Cchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC
Confidence 5555555555 7899999999999998877 4677999988877666655543 23446899999999999999999
Q ss_pred CCcEEEEeCC
Q 001386 643 ENRIKILETP 652 (1088)
Q Consensus 643 dg~i~iwd~~ 652 (1088)
+|.+.+|.+.
T Consensus 503 ~grv~l~kL~ 512 (514)
T KOG2055|consen 503 AGRVHLFKLH 512 (514)
T ss_pred CCceeeEeec
Confidence 9999999875
No 130
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.1e-22 Score=219.93 Aligned_cols=285 Identities=18% Similarity=0.209 Sum_probs=218.2
Q ss_pred cccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCC
Q 001386 732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 811 (1088)
Q Consensus 732 ~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 811 (1088)
.|....+.++|.++|.++++++.||.|++|+....... +.. + . .+...|.+++. ++.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~------P~t--------i---~----~~g~~v~~ia~--~s~ 67 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE------PET--------I---D----ISGELVSSIAC--YSN 67 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC------Cch--------h---h----ccCceeEEEee--ccc
Confidence 37778899999999999999999999999985443110 000 0 0 03455655555 455
Q ss_pred EEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEE
Q 001386 812 YLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 890 (1088)
Q Consensus 812 ~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~ 890 (1088)
.+++++ +++|.+|.+.+++.-..+....-++++++|+. +|+++|.|++|-.|++-+..+......+++|.++|.+|.|
T Consensus 68 ~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~ 146 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSY 146 (933)
T ss_pred ceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeE
Confidence 777777 89999999998877656655667899999999 8999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeeee
Q 001386 891 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQW 969 (1088)
Q Consensus 891 s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~ 969 (1088)
+|.+.+||+.+-||.|++||+.++........-...........+..++|+|+|..+++ +.|+.|.+|+..+++....+
T Consensus 147 ~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~L 226 (933)
T KOG1274|consen 147 DPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKL 226 (933)
T ss_pred cCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheee
Confidence 99999999999999999999998764432221111111111245788999999655555 89999999999999988887
Q ss_pred ecCC-CcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCC
Q 001386 970 FPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN 1048 (1088)
Q Consensus 970 ~~~h-~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~d 1048 (1088)
...+ ...+..+.|||+|+|||+++.||.|.|||+++-+. . ...-...+++|.| +.+-+-.-..-
T Consensus 227 r~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~-------------~~~~~Vc~~aw~p-~~n~it~~~~~ 291 (933)
T KOG1274|consen 227 RDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-H-------------EFKRAVCCEAWKP-NANAITLITAL 291 (933)
T ss_pred cccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-c-------------cccceeEEEecCC-CCCeeEEEeec
Confidence 6655 44499999999999999999999999999998221 1 1113356788888 55555545445
Q ss_pred CcEEEEe
Q 001386 1049 GEVYVIE 1055 (1088)
Q Consensus 1049 g~v~~w~ 1055 (1088)
|...+|.
T Consensus 292 g~~~~~~ 298 (933)
T KOG1274|consen 292 GTLGVSP 298 (933)
T ss_pred cccccCh
Confidence 5544443
No 131
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.3e-22 Score=203.70 Aligned_cols=289 Identities=15% Similarity=0.224 Sum_probs=223.7
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC--eeeEEEeCCCCCCCCceEEEecCCC-EEEEEeCCCcEEEEeCCCC
Q 001386 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES 654 (1088)
Q Consensus 578 ~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~~ 654 (1088)
.+.|+++.|+|..+.+++++.|++++||.+... ..++.+... ..+|.+.+|.|+|. .+++++....++.||+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~--~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLE--KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeec--cCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 368999999999999999999999999988643 344444443 33689999999998 8888888888999998765
Q ss_pred CcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCcccc
Q 001386 655 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKA 734 (1088)
Q Consensus 655 ~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~ 734 (1088)
+....-..
T Consensus 291 k~~k~~~~------------------------------------------------------------------------ 298 (514)
T KOG2055|consen 291 KVTKLKPP------------------------------------------------------------------------ 298 (514)
T ss_pred ccccccCC------------------------------------------------------------------------
Confidence 33211000
Q ss_pred ccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEE
Q 001386 735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF 814 (1088)
Q Consensus 735 ~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 814 (1088)
.| . ....+..+.+|+++++|+
T Consensus 299 ----------~g--------------------------------------~-----------e~~~~e~FeVShd~~fia 319 (514)
T KOG2055|consen 299 ----------YG--------------------------------------V-----------EEKSMERFEVSHDSNFIA 319 (514)
T ss_pred ----------CC--------------------------------------c-----------ccchhheeEecCCCCeEE
Confidence 00 0 122345567788888888
Q ss_pred EEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccC-CeeEEEECC
Q 001386 815 SAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK-RVTGLVFSD 892 (1088)
Q Consensus 815 ~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~-~V~~l~~s~ 892 (1088)
..+ .|.|.+....+++.+.+++ -.+.|..++|+. +++.|++.+.+|.|++||++...++.++....+ .-++++.|+
T Consensus 320 ~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ 397 (514)
T KOG2055|consen 320 IAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISL 397 (514)
T ss_pred EcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecC
Confidence 877 7889998888888888887 667899999998 788888888999999999999999988874322 235688889
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCcee-eeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE---eCCeEEEEEcCcceeeee
Q 001386 893 ALNILVSSGGDAQIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQ 968 (1088)
Q Consensus 893 dg~~las~s~Dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~---~d~~i~vwd~~~~~~~~~ 968 (1088)
+|.+||+||..|.|.|||.++.-.. ...++.....-. ..|++++|++|+..||.+ ..+.+++-.+.+......
T Consensus 398 ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsN 474 (514)
T KOG2055|consen 398 NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSN 474 (514)
T ss_pred CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeecc
Confidence 9999999999999999997752211 122333333222 369999999999999984 456899999988887777
Q ss_pred eecCC--CcCEEEEEEeeCCCEEEEEeCCCcEEEEEcC
Q 001386 969 WFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1004 (1088)
Q Consensus 969 ~~~~h--~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~ 1004 (1088)
|.... -+.|+|++|||.|.++|.|..+|.|.+|.+.
T Consensus 475 fP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 475 FPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 65432 5789999999999999999999999999874
No 132
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=6e-23 Score=208.75 Aligned_cols=265 Identities=15% Similarity=0.218 Sum_probs=211.1
Q ss_pred ccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-CCC
Q 001386 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGS 409 (1088)
Q Consensus 331 ~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~-dg~ 409 (1088)
-.|.++|..+.+-|....++|+++..+.|.|||...-.-..... ..-.+...+.||...=..++|++ ..-
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~---------~~~~Pdl~L~gH~~eg~glsWn~~~~g 191 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS---------GECRPDLRLKGHEKEGYGLSWNRQQEG 191 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc---------ccCCCceEEEeecccccccccccccce
Confidence 46888999999999998899999999999999997643322100 01112234888998888899999 556
Q ss_pred EEEEEeCCCEEEEEEccCCCc----ccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCC--CCceeEEecc
Q 001386 410 LLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV--TGSRTYSFEG 483 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~--~~~~~~~~~~ 483 (1088)
.|++++.|++|++||+..... +.....+.+|+..|..++|++-... ++++++.|+.+.|||++ +.++.+...+
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~~~~a 270 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSHSVKA 270 (422)
T ss_pred eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCcccccc
Confidence 889999999999999986543 5566678899999999999998877 78999999999999999 5666788899
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc-eEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 562 (1088)
|.+.|++++|.|.. +..||+|+.|++|.+||+++... ...+..|...|..+.|||....+++.+. .++.+.+||+
T Consensus 271 h~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg---~D~rl~vWDl 346 (422)
T KOG0264|consen 271 HSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG---TDRRLNVWDL 346 (422)
T ss_pred cCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc---cCCcEEEEec
Confidence 99999999998874 67999999999999999998764 6688999999999999997765544432 2667999998
Q ss_pred CCCcee-----------EEEeccccccccEEEEEEeCCCCEEE-EEeCCCcEEEEEcCC
Q 001386 563 SEGAIK-----------RTYQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHVIKIWDMNK 609 (1088)
Q Consensus 563 ~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~-~~s~dg~i~iwd~~~ 609 (1088)
..-... ..+-.|.+|...|..+.|+|+..+++ +.++|+.+.||.+..
T Consensus 347 s~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 347 SRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 742211 11223444458999999999988765 478999999999863
No 133
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=2.8e-21 Score=211.40 Aligned_cols=289 Identities=11% Similarity=0.055 Sum_probs=211.5
Q ss_pred EEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEE-EEEeCCCEEEEEEccC
Q 001386 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYHG 427 (1088)
Q Consensus 349 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l-as~~~dg~i~vwd~~~ 427 (1088)
++++++.|+.|++||+.+++.+.. +..+ ..+.+++|+|||+.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 788999999999999999886654 3333 346789999999977 5667889999999998
Q ss_pred CCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEec
Q 001386 428 GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 507 (1088)
Q Consensus 428 ~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 507 (1088)
++... .+..+. .+..++|+|+++. ++++++.|+.+++||+.+++.+..+.. ...+.++++ ++++.++++++.
T Consensus 63 ~~~~~---~~~~~~-~~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~--~~dg~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIG---TLPSGP-DPELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAV--SPDGKIVVNTSE 134 (300)
T ss_pred CcEEE---eccCCC-CccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEE--CCCCCEEEEEec
Confidence 87544 343443 3567899999984 345556789999999999888877763 234567777 457778888887
Q ss_pred CC-eEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEecccc----ccccEE
Q 001386 508 DG-KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVS 582 (1088)
Q Consensus 508 dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~ 582 (1088)
++ .+.+||.++......... ......++|+|+|+++++++. .++.|.+||..+++.+..+..+.. ......
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 75 567789877655443322 234567899999999876542 255699999999988776653210 011234
Q ss_pred EEEEeCCCCEEEE-EeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEe-CCCcEEEEeCCCCCccccc
Q 001386 583 VVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAA 660 (1088)
Q Consensus 583 ~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~ 660 (1088)
.++|+|+++++++ .+.++.+.+||..+++.+..+.... .+.+++|+|+|++|+++. .++.|.+||..+++.+..+
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQ---RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCC---CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 6889999998655 4556789999999988876654322 478999999999998864 5899999999999887777
Q ss_pred ccccCcceeeeec
Q 001386 661 GVLSDNLRKLSVN 673 (1088)
Q Consensus 661 ~~~~~~v~~~~~~ 673 (1088)
... ...+.++++
T Consensus 288 ~~~-~~~~~~~~~ 299 (300)
T TIGR03866 288 KVG-RLPWGVVVR 299 (300)
T ss_pred Ecc-cccceeEeC
Confidence 643 333555543
No 134
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.2e-21 Score=189.02 Aligned_cols=268 Identities=15% Similarity=0.111 Sum_probs=209.8
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001386 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~ 474 (1088)
....|+.+.|+|.+..|++++.||++++||+...+... .-.|..++.+++|.++.+ +++|+.||.|+.+|+.+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLNT 84 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEecC
Confidence 57889999999999999999999999999999875333 336899999999998765 89999999999999998
Q ss_pred CceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCc
Q 001386 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1088)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~ 554 (1088)
+... .+..|..+|.++...+.. ..+++|+.|++|++||.+.......+.... .|.++. -.|..|++++. +
T Consensus 85 ~~~~-~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~--v~g~~LvVg~~----~ 154 (323)
T KOG1036|consen 85 GNED-QIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMD--VSGNRLVVGTS----D 154 (323)
T ss_pred Ccce-eeccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEe--ccCCEEEEeec----C
Confidence 8765 445599999999987544 479999999999999998755444444433 666655 45677777765 4
Q ss_pred eeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC----eeeEEEeCCCC-------CC
Q 001386 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGG-------LP 623 (1088)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~-------~~ 623 (1088)
..+.+||+++........... -+..++++++.|++.-+++++-||.|.+=.++.. +....++.|.. .-
T Consensus 155 r~v~iyDLRn~~~~~q~reS~-lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPFQRRESS-LKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred ceEEEEEcccccchhhhcccc-ceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 569999998765433221111 1367899999999999999999999988665554 33344444421 12
Q ss_pred CCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCccee
Q 001386 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 680 (1088)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 680 (1088)
+|++++|+|-...+|+|+.||.|.+||..+.+.+..+......|.+++|+..+..++
T Consensus 234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LA 290 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLA 290 (323)
T ss_pred EeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEE
Confidence 588999999989999999999999999999999999988888899999985554443
No 135
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=9e-22 Score=187.58 Aligned_cols=305 Identities=14% Similarity=0.172 Sum_probs=220.2
Q ss_pred cccccEEEEEEec-CCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEec-C
Q 001386 732 VKANKISRLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-N 809 (1088)
Q Consensus 732 ~~~~~i~~~~~s~-~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d 809 (1088)
.|.+.|+++.+.+ .|+++++|+.||.+.+||++.......... +....|+... ....+|...|..+.|-| |
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l------i~k~~c~v~~-~h~~~Hky~iss~~WyP~D 113 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL------IAKHKCIVAK-QHENGHKYAISSAIWYPID 113 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc------eeheeeeccc-cCCccceeeeeeeEEeeec
Confidence 4778899998876 588999999999999999986653111100 0111122111 11235888999999998 4
Q ss_pred CCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCC--CCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCee
Q 001386 810 DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH--DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 886 (1088)
Q Consensus 810 g~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~--d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~ 886 (1088)
...+.+++ |.++++||.++.+....|+ -.+.|.+-++||- ...++|+|..|-.|++-|+.+|...+.+.||.+.|.
T Consensus 114 tGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 114 TGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred CceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence 45555666 9999999999999888877 4456666666662 135899999999999999999999999999999999
Q ss_pred EEEECCCCCE-EEEEeCCCcEEEEEcCCCc--eee-----eeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEE
Q 001386 887 GLVFSDALNI-LVSSGGDAQIFVWDVDGWG--IQT-----CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAI 957 (1088)
Q Consensus 887 ~l~~s~dg~~-las~s~Dg~i~iwd~~~~~--~~~-----~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~v 957 (1088)
++.|||...+ |++|+.||.|++||+.... ... ....+..+....+.+.+..++|+.||.++++ +.|..+++
T Consensus 193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV 272 (397)
T ss_pred EEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence 9999998776 8899999999999997631 100 0111111222333358999999999999999 89999999
Q ss_pred EEcCcceeeeeeec--CCC---cCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEE
Q 001386 958 YEAEELTCLKQWFP--ISS---VPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAI 1032 (1088)
Q Consensus 958 wd~~~~~~~~~~~~--~h~---~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1088)
|+...|+.....+. .|+ +.-..+. +.+...++.--.++.+.++++-.|..+..+..+ . -...|.
T Consensus 273 wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h--------~--k~i~c~ 341 (397)
T KOG4283|consen 273 WNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH--------L--KRINCA 341 (397)
T ss_pred eecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecc--------c--ceeeEE
Confidence 99998875433221 121 1111133 445555555556799999999999999888622 1 233567
Q ss_pred EECCCCCCEEEEEeCCCcEEEEeC
Q 001386 1033 AAHPLKPTQFAVGLTNGEVYVIEP 1056 (1088)
Q Consensus 1033 ~~~p~d~~~l~~~~~dg~v~~w~l 1056 (1088)
+|.| +-+...+|..|+.+..|-+
T Consensus 342 ~~~~-~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 342 AYRP-DFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred eecC-chhhhhccccCCccccccc
Confidence 7888 7788999999999999987
No 136
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.9e-22 Score=203.76 Aligned_cols=303 Identities=17% Similarity=0.203 Sum_probs=224.7
Q ss_pred EEeCCC-cEEEEeCCCCceeEEeccCC-ccEEEEeeeeeCCceEEEEEec-CCeEEEEECCCCCceEEecCCCCceEEEE
Q 001386 460 TCGDDK-TIKVWDAVTGSRTYSFEGHG-APVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1088)
Q Consensus 460 s~s~d~-~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 536 (1088)
+++.|. ++.+||+.+|..+.++++.. ..-.++.. - ++.+++++.. -..+.+|.+.............+++.+++
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~--l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~ 88 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTA--L-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALA 88 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhh--h-chhheeeecccCccccccccCchhhhhhhcccccceeeee
Confidence 344444 59999999999998887652 21111111 1 2245666554 45699998877665554445566899999
Q ss_pred EccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCC-------
Q 001386 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK------- 609 (1088)
Q Consensus 537 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~------- 609 (1088)
-+|+|.+|+.++.. +.|++|.+.+|.++..+..|- ..|+++.|+.||.+|++||.||.|.+|.+.+
T Consensus 89 s~n~G~~l~ag~i~----g~lYlWelssG~LL~v~~aHY---Q~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~ 161 (476)
T KOG0646|consen 89 SSNLGYFLLAGTIS----GNLYLWELSSGILLNVLSAHY---QSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADND 161 (476)
T ss_pred cCCCceEEEeeccc----CcEEEEEeccccHHHHHHhhc---cceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccC
Confidence 99999999998663 449999999999999998887 8999999999999999999999999998642
Q ss_pred --CeeeEEEeCCCCCCCCceEEEecC--CCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccC
Q 001386 610 --VQLLTTIDAGGGLPENPRICFNKN--GTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIAN 685 (1088)
Q Consensus 610 --~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~ 685 (1088)
-+++..+..| .-.|+.+...+. ..++++++.|.++++||+..+..+..+.
T Consensus 162 ~~~~p~~~f~~H--tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~------------------------ 215 (476)
T KOG0646|consen 162 HSVKPLHIFSDH--TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT------------------------ 215 (476)
T ss_pred CCccceeeeccC--cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe------------------------
Confidence 3455555544 335777776654 4578899999999999988764443221
Q ss_pred CceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccC
Q 001386 686 GSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR 765 (1088)
Q Consensus 686 ~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~ 765 (1088)
....+.+++.+|-++.+++|+.+|.|.+.++..
T Consensus 216 -----------------------------------------------fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~ 248 (476)
T KOG0646|consen 216 -----------------------------------------------FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFK 248 (476)
T ss_pred -----------------------------------------------cCCcceeEEEcccccEEEecCCcceEEeeehhc
Confidence 234678899999999999999999888766432
Q ss_pred CCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCC--CeE
Q 001386 766 NDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSP--TAT 843 (1088)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~ 843 (1088)
-.. ....+. .+.++. .+..+..+.+|.+ .|+
T Consensus 249 ~~~----------------------------~~~~v~------------------~k~~~~-~~t~~~~~~Gh~~~~~IT 281 (476)
T KOG0646|consen 249 LSG----------------------------QSAGVN------------------QKGRHE-ENTQINVLVGHENESAIT 281 (476)
T ss_pred CCc----------------------------cccccc------------------cccccc-ccceeeeeccccCCccee
Confidence 111 011111 111111 2455667778887 999
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCC
Q 001386 844 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA 893 (1088)
Q Consensus 844 ~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~d 893 (1088)
|++++- ||.+|++|+.||.|+|||+.+.++++++..-.++|+.+.+.|-
T Consensus 282 cLais~-DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 282 CLAIST-DGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred EEEEec-CccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 999999 8999999999999999999999999988877899999999664
No 137
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.3e-22 Score=188.38 Aligned_cols=254 Identities=16% Similarity=0.208 Sum_probs=204.7
Q ss_pred cccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC--C
Q 001386 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--D 407 (1088)
Q Consensus 330 l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~--d 407 (1088)
-.+|.+.|..++..--|++ |||++.|++|+|+.+.+..... ....|.||.++|..++|.. -
T Consensus 7 dt~H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~ 69 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKF 69 (299)
T ss_pred hhhhhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeeccccc
Confidence 3589999999999989994 8999999999999998765421 1123899999999999987 8
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-c--eeEEeccC
Q 001386 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-S--RTYSFEGH 484 (1088)
Q Consensus 408 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~-~--~~~~~~~~ 484 (1088)
|.+||+++.||.|.||.-++| ...+..+...|...|++++|.|.+--+.|++++.||.|.|.+.++. . .......|
T Consensus 70 G~iLAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH 148 (299)
T KOG1332|consen 70 GTILASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAH 148 (299)
T ss_pred CcEeeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcc
Confidence 999999999999999999988 4455557889999999999999988889999999999999987754 2 22445679
Q ss_pred CccEEEEeeeeeCC-c-----------eEEEEEecCCeEEEEECCCCCc--eEEecCCCCceEEEEEccCC----CEEEE
Q 001386 485 GAPVYSLCPHAKEN-I-----------HFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANG----RRLFS 546 (1088)
Q Consensus 485 ~~~v~~~~~~~~~~-~-----------~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~g----~~l~~ 546 (1088)
.-.|+++++.|..- | +.|++|+.|..|+||+.++..- ...+..|...|..++|.|.- .+|++
T Consensus 149 ~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS 228 (299)
T KOG1332|consen 149 EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIAS 228 (299)
T ss_pred ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEE
Confidence 99999999977521 1 5799999999999999987642 33578889999999999965 46788
Q ss_pred EeeCCCCceeEEEEeCCCC--cee-EEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 001386 547 CGTSKEGESFLVEWNESEG--AIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1088)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~--~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 608 (1088)
++. ++.+.||-.... ... ..+.... ..+..+.|++.|+.|+.++.|+.|.+|.-.
T Consensus 229 ~Sq----Dg~viIwt~~~e~e~wk~tll~~f~---~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 229 CSQ----DGTVIIWTKDEEYEPWKKTLLEEFP---DVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ecC----CCcEEEEEecCccCcccccccccCC---cceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 765 556999976521 111 1222233 689999999999999999999999999754
No 138
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=3.8e-21 Score=202.46 Aligned_cols=452 Identities=13% Similarity=0.120 Sum_probs=288.3
Q ss_pred CEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCce
Q 001386 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR 522 (1088)
Q Consensus 443 ~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 522 (1088)
.|..++|-|||.+++++. +..+.+||...|..+.++++|...|+++++ +.||+.+++|+.|..|.+|.-.-....
T Consensus 14 ci~d~afkPDGsqL~lAA---g~rlliyD~ndG~llqtLKgHKDtVycVAy--s~dGkrFASG~aDK~VI~W~~klEG~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA---GSRLLVYDTSDGTLLQPLKGHKDTVYCVAY--AKDGKRFASGSADKSVIIWTSKLEGIL 88 (1081)
T ss_pred chheeEECCCCceEEEec---CCEEEEEeCCCcccccccccccceEEEEEE--ccCCceeccCCCceeEEEeccccccee
Confidence 799999999999744433 346999999999999999999999999999 668899999999999999965433322
Q ss_pred EEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcE
Q 001386 523 VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI 602 (1088)
Q Consensus 523 ~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i 602 (1088)
-..|+..|.||.|+|-...|++++.+. .-+|........+. +. ...+.+++|..||++++.|-.+|+|
T Consensus 89 --kYSH~D~IQCMsFNP~~h~LasCsLsd-----FglWS~~qK~V~K~-ks----s~R~~~CsWtnDGqylalG~~nGTI 156 (1081)
T KOG1538|consen 89 --KYSHNDAIQCMSFNPITHQLASCSLSD-----FGLWSPEQKSVSKH-KS----SSRIICCSWTNDGQYLALGMFNGTI 156 (1081)
T ss_pred --eeccCCeeeEeecCchHHHhhhcchhh-----ccccChhhhhHHhh-hh----heeEEEeeecCCCcEEEEeccCceE
Confidence 235777999999999999999998542 66787665433221 11 2468899999999999999999999
Q ss_pred EEEEcCCCeeeEEEeCCCCCCCCceEEEecCC-----CEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCc
Q 001386 603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNG-----TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIST 677 (1088)
Q Consensus 603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~ 677 (1088)
.+-+......+..-...+...+|.+++|+|.. ..+++.....++.++.+... .+..-+...-.-.|+.+
T Consensus 157 siRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~Igk~r~L~FdP~CisY----- 230 (1081)
T KOG1538|consen 157 SIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-QIGKDRALNFDPCCISY----- 230 (1081)
T ss_pred EeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-eecccccCCCCchhhee-----
Confidence 99876544444444444556789999999953 46777777777777776632 22211111112223333
Q ss_pred ceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccc
Q 001386 678 VTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGV 757 (1088)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~ 757 (1088)
-++|.++..|+.|+.+.++..+. ...-.... ....|..++..|+++.++.|..||+
T Consensus 231 -----------------f~NGEy~LiGGsdk~L~~fTR~G-----vrLGTvg~--~D~WIWtV~~~PNsQ~v~~GCqDGT 286 (1081)
T KOG1538|consen 231 -----------------FTNGEYILLGGSDKQLSLFTRDG-----VRLGTVGE--QDSWIWTVQAKPNSQYVVVGCQDGT 286 (1081)
T ss_pred -----------------ccCCcEEEEccCCCceEEEeecC-----eEEeeccc--cceeEEEEEEccCCceEEEEEccCe
Confidence 36788888899999888886431 11111111 4568999999999999999999999
Q ss_pred eEEEEccCCCCCCC----------------------------------------------CCCCCcccCCCCCCccee-e
Q 001386 758 HLMWRWPRNDLTLS----------------------------------------------TEVPPRLYQPRHGPQFMV-N 790 (1088)
Q Consensus 758 v~iw~~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~~~~~~-~ 790 (1088)
+..|++-....... ....+.+|...++..... .
T Consensus 287 iACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLpeki~iYel~se~~~~mhY 366 (1081)
T KOG1538|consen 287 IACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLPEKILIYELYSEDLSDMHY 366 (1081)
T ss_pred eehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecccceEEEEeccccccccchh
Confidence 99998754432110 011111222222210000 0
Q ss_pred ccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEE--EEcCCCCcEEEEEeCCCeEEEEE
Q 001386 791 DTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSL--AFNPHDNNVIAIGMDDSTILIYN 868 (1088)
Q Consensus 791 ~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l--~~sp~d~~~lasg~~dg~i~lwd 868 (1088)
...+ .-.....+--+--.+..++.+.+..+..+|...-+. +... -.+-|.-+ .=-|.+..-|+.|..||.|.-.=
T Consensus 367 ~v~e-kI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~-ReW~-M~S~iRYikV~GGP~gREgL~vGlknGqV~kiF 443 (1081)
T KOG1538|consen 367 RVKE-KIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKE-REWQ-MESLIRYIKVIGGPPGREGLLVGLKNGQVLKIF 443 (1081)
T ss_pred HHHH-HHHhhccceEEEEEcCeEEEEcccceeeecccchhh-hhhh-HHHHHHhhhhhcCCCCcceeEEEecCCcEEEEE
Confidence 0000 000000111111134455556667777777653211 1000 00001101 11122556788899898765433
Q ss_pred cCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEE
Q 001386 869 ARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 948 (1088)
Q Consensus 869 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~ 948 (1088)
+.+.-++.. ......|.|+..+...+.||+..+.++..++|+.+++. .++.+ .+.+++|+....-++
T Consensus 444 ~dN~~PiLl-~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~el----L~QEp--------g~nSV~wNT~~E~Ml 510 (1081)
T KOG1538|consen 444 VDNLFPILL-LKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKEL----LFQEP--------GANSVAWNTQCEDML 510 (1081)
T ss_pred ecCCchhhe-ecccceeEEeeccCCcceEEEEccCCeEEEEEccCCce----EeecC--------CCceEEeeccccceE
Confidence 444333322 22456799999999999999999999999999999652 22222 477899988765555
Q ss_pred E-EeCCeEEE
Q 001386 949 L-VHETHLAI 957 (1088)
Q Consensus 949 ~-~~d~~i~v 957 (1088)
+ +..|.+.|
T Consensus 511 cfT~~g~L~V 520 (1081)
T KOG1538|consen 511 CFTGGGYLNV 520 (1081)
T ss_pred EEecCCceEE
Confidence 4 55565544
No 139
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=2.5e-22 Score=204.73 Aligned_cols=273 Identities=13% Similarity=0.106 Sum_probs=216.8
Q ss_pred CCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCC
Q 001386 696 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVP 775 (1088)
Q Consensus 696 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~ 775 (1088)
...+.+.+|+. |.|+|||+..... +.-.-.++......-|+++...|||+.|++|+.-.++.|||+......
T Consensus 429 ~~trhVyTgGk-gcVKVWdis~pg~-k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpr------ 500 (705)
T KOG0639|consen 429 NPTRHVYTGGK-GCVKVWDISQPGN-KSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR------ 500 (705)
T ss_pred CCcceeEecCC-CeEEEeeccCCCC-CCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcc------
Confidence 44556667665 8899999764321 111222233335678999999999999999999999999998765431
Q ss_pred CcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcE
Q 001386 776 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNV 854 (1088)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~ 854 (1088)
...+++ ...-...+++++||.++.+++. ||.|.|||+.+...++.|++|.+.+.|+.+++ ||..
T Consensus 501 ------------ikaelt--ssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~-dGtk 565 (705)
T KOG0639|consen 501 ------------IKAELT--SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK-DGTK 565 (705)
T ss_pred ------------hhhhcC--CcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC-CCce
Confidence 111111 1234556789999999877775 99999999999999999999999999999999 8999
Q ss_pred EEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCC
Q 001386 855 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS 934 (1088)
Q Consensus 855 lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1088)
|-+|+-|.+|+-||+++++.+.... ..+.|.++..+|.+.+|+.|-+++.+.|-.....++. .+.. |. .-
T Consensus 566 lWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ky---qlhl---he---Sc 635 (705)
T KOG0639|consen 566 LWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY---QLHL---HE---SC 635 (705)
T ss_pred eecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccce---eecc---cc---cE
Confidence 9999999999999999988765544 4577999999999999999999998888777664321 1111 22 25
Q ss_pred eEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 001386 935 ETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1003 (1088)
Q Consensus 935 v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~ 1003 (1088)
|.++.|++-|+++++ |.|+-+..|.+.-|..+.+.. ..+.|.++..|.|.++++||+.|....||.+
T Consensus 636 VLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk--E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 636 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred EEEEEecccCceeeecCchhhhhhccCccccceeecc--ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 899999999999998 899999999999888776643 3789999999999999999999998888875
No 140
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=1.3e-21 Score=198.15 Aligned_cols=305 Identities=17% Similarity=0.195 Sum_probs=229.6
Q ss_pred hheeecccCCCCceeeeecCCCC-eEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~-~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1088)
...+...-|...|++++|+|... .++|+|+..|.|-+||+.+.+...... .++..|.++|.++.
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~ 241 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLK 241 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceE
Confidence 34455567888999999999876 799999999999999997544333211 23788999999999
Q ss_pred ECC-CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce-eEEe
Q 001386 404 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSF 481 (1088)
Q Consensus 404 ~s~-dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~-~~~~ 481 (1088)
|+| +-..+.+.|.||+|++-|++++.. ..+..+..-...+..+.|+.+.. .++.+..=|...+||.+++.. ...+
T Consensus 242 F~P~n~s~i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~ 318 (498)
T KOG4328|consen 242 FSPANTSQIYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENL 318 (498)
T ss_pred ecCCChhheeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhh
Confidence 999 667888999999999999997642 22223333445678889998888 577777777999999998655 5667
Q ss_pred ccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCce----EEecCCCCceEEEEEccCCCEEEEEeeCCCCceeE
Q 001386 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1088)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i 557 (1088)
.-|...|++++++|... .++++++.|++++|||++..... .....|...|.+..|||.+-.|++.+. +..|
T Consensus 319 ~lh~kKI~sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~I 393 (498)
T KOG4328|consen 319 RLHKKKITSVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEI 393 (498)
T ss_pred hhhhcccceeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCce
Confidence 77888999999988744 79999999999999999865433 445667889999999998888888765 5569
Q ss_pred EEEeCC----CCceeEEEeccccccc--cEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEe
Q 001386 558 VEWNES----EGAIKRTYQGLQLQHN--SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1088)
Q Consensus 558 ~iwd~~----~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1088)
+|||.. .-.....+.....+.. ......|.|+..++++|-.-..|-|+|-..++.+..+..........-..|+
T Consensus 394 Rv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~H 473 (498)
T KOG4328|consen 394 RVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFH 473 (498)
T ss_pred EEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeec
Confidence 999983 3333333332221112 2345689999999999999999999999999988776544332222346799
Q ss_pred cCCC-EEEEEeCCCcEEEEeCC
Q 001386 632 KNGT-LLAVIANENRIKILETP 652 (1088)
Q Consensus 632 ~~~~-~l~~~~~dg~i~iwd~~ 652 (1088)
|-+. +++.++..|.|+||...
T Consensus 474 P~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 474 PMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ccccceeccCCccceEEEEecC
Confidence 9777 55555567889988654
No 141
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.2e-21 Score=188.70 Aligned_cols=264 Identities=15% Similarity=0.237 Sum_probs=203.7
Q ss_pred eEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001386 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1088)
Q Consensus 399 V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~ 478 (1088)
-.|+.||+.|.+||+|+.||.|.|||+.|-..-+ .+.+|..+|++++||+||+ .|+|+|.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999976444 6889999999999999999 8999999999999999999999
Q ss_pred EEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCC----ceEEEEEccCCCEEEEEeeCCCCc
Q 001386 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL----GCTRMAYSANGRRLFSCGTSKEGE 554 (1088)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~v~~~~~s~~g~~l~~~~~~~~~~ 554 (1088)
+.+. ...+|+.+.|+|......+++--... -.+-++.............+ ...+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~~~s-p~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIMEES-PVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEecCC-cEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 9887 77899999999987766666544333 33444443222221111111 1223468999999999865 6
Q ss_pred eeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC-------eee--EEEeCCCCCCCC
Q 001386 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-------QLL--TTIDAGGGLPEN 625 (1088)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-------~~~--~~~~~~~~~~~v 625 (1088)
|.+.++|..+-+++..++-.. ...|..+.++..|.+++.-+.|..||.|++..- ++. +.+..--+...-
T Consensus 175 Gkllv~~a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W 252 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW 252 (405)
T ss_pred ceEEEEecchheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence 779999999999888877544 367899999999999999999999999998631 111 111100111234
Q ss_pred ceEEEecCCCEEEEEeC-CCcEEEEeCCCCCccccccccc-CcceeeeecCC
Q 001386 626 PRICFNKNGTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPI 675 (1088)
Q Consensus 626 ~~v~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~p~ 675 (1088)
.+++|+.+|.+++.++. ...++||....|..++.+.+.. +....+.++|.
T Consensus 253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~ 304 (405)
T KOG1273|consen 253 KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPV 304 (405)
T ss_pred hheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccc
Confidence 68999999999988775 4689999999999999998877 56666777754
No 142
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=1.3e-20 Score=198.44 Aligned_cols=274 Identities=14% Similarity=0.152 Sum_probs=204.4
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~ 415 (1088)
.|..++|-|||..+++.++ ..+.|||++.|..+.+ +++|...|.|++||.||+++|+|+
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence 8999999999997666554 7899999999998876 899999999999999999999999
Q ss_pred CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeee
Q 001386 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 495 (1088)
.|..|.+|+-.-...++ ..|...|.|+.|+|-.. .+++++-. ..-+|..+..... .|...+..++.++
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~----K~kss~R~~~CsW 140 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVS----KHKSSSRIICCSW 140 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHH----hhhhheeEEEeee
Confidence 99999999876543222 26999999999999988 68888754 4678986654432 2333333333344
Q ss_pred eCCceEEEEEecCCeEEEEECCCCCceEEecC---CCCceEEEEEccCCC-----EEEEEeeCCCCceeEEEEeCCCCce
Q 001386 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDA---PGLGCTRMAYSANGR-----RLFSCGTSKEGESFLVEWNESEGAI 567 (1088)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~g~-----~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1088)
..||++++.|-.+|+|.+-+- +++....+.. .+.+|.+++|+|... .+++.-. ..++..+.+ +|+.
T Consensus 141 tnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~L-sG~~ 214 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQL-SGKQ 214 (1081)
T ss_pred cCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEe-ccee
Confidence 789999999999999998853 3444444433 556899999999643 2333211 122333332 2333
Q ss_pred eEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEE
Q 001386 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1088)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1088)
+..-+... ....|+.+.++|.+++.|+.|+.+.+|.. .|-.+.++.... ..|+.++..|+++.++.|+.||+|.
T Consensus 215 Igk~r~L~---FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D--~WIWtV~~~PNsQ~v~~GCqDGTiA 288 (1081)
T KOG1538|consen 215 IGKDRALN---FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQD--SWIWTVQAKPNSQYVVVGCQDGTIA 288 (1081)
T ss_pred ecccccCC---CCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccc--eeEEEEEEccCCceEEEEEccCeee
Confidence 33222222 45678899999999999999999999975 566666665433 3689999999999999999999999
Q ss_pred EEeCCCC
Q 001386 648 ILETPES 654 (1088)
Q Consensus 648 iwd~~~~ 654 (1088)
.|++...
T Consensus 289 CyNl~fS 295 (1081)
T KOG1538|consen 289 CYNLIFS 295 (1081)
T ss_pred hhhhHHh
Confidence 9987643
No 143
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=5.2e-23 Score=219.48 Aligned_cols=236 Identities=17% Similarity=0.287 Sum_probs=212.9
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+..|...|.|+..-..++.+++|+.|..+-+|.+..-..+. .+.+|..+|.++.|+++.. +|++|+.+|+|++||
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence 34488999999987789999999999999999987654444 5889999999999999988 899999999999999
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCC
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
++.++.++++.+|...+.++.|+| -+.+.++|+.|+.+++||.+...+...+..|...+..+.|+|+|++++.++.
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P--~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-- 174 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHP--YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE-- 174 (825)
T ss_pred hhhhhhhhhhhccccCcceeeecc--ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC--
Confidence 999999999999999999999865 5679999999999999999999999999999989999999999999999875
Q ss_pred CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEe
Q 001386 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1088)
+..+.+||...|+....|.+|. +.+.++.|+|..-.++.|+.|+++++||+++.+.+...... ...|.+.+|+
T Consensus 175 --d~tvki~d~~agk~~~ef~~~e---~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn 247 (825)
T KOG0267|consen 175 --DNTVKIWDLTAGKLSKEFKSHE---GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFN 247 (825)
T ss_pred --cceeeeeccccccccccccccc---ccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeec
Confidence 5679999999999999999998 89999999999888889999999999999998888777654 4579999999
Q ss_pred cCCCEEEEEeCC
Q 001386 632 KNGTLLAVIANE 643 (1088)
Q Consensus 632 ~~~~~l~~~~~d 643 (1088)
|++..+++|...
T Consensus 248 ~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 248 PDGKIVLSGEQI 259 (825)
T ss_pred CCceeeecCchh
Confidence 999999888765
No 144
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=2.3e-21 Score=202.35 Aligned_cols=323 Identities=12% Similarity=0.156 Sum_probs=244.2
Q ss_pred cccCCCchhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCC
Q 001386 317 TSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 396 (1088)
Q Consensus 317 ~~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~ 396 (1088)
.....+|..|...+.||++.|.|+...|.|. +||+|+.||+|+||.+.||.++++.. -.
T Consensus 383 ~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~--------------------~d 441 (733)
T KOG0650|consen 383 KDLRPFPTRCALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQ--------------------FD 441 (733)
T ss_pred hhcCCCcceeeeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEe--------------------ec
Confidence 3445567888999999999999999999998 79999999999999999999998644 34
Q ss_pred CCeEEEEECCCCC--EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEE----EeCCCcEEEE
Q 001386 397 VSVNRVVWSPDGS--LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVIT----CGDDKTIKVW 470 (1088)
Q Consensus 397 ~~V~~l~~s~dg~--~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s----~s~d~~i~vw 470 (1088)
+.|.|++|+|.++ .||++-... +.|-+..-|..+.. +.+ .. .+++ ...|+.+..|
T Consensus 442 ~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~-----~~t-----------~e--ll~~~~~~~~p~~~~~~W 502 (733)
T KOG0650|consen 442 SEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEV-----GPT-----------KE--LLASAPNESEPDAAVVTW 502 (733)
T ss_pred ceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhh-----cch-----------hh--hhhcCCCccCCcccceee
Confidence 5899999999665 455554443 66666555532211 000 00 1111 2235577788
Q ss_pred eCCCC----ceeEEeccCCccEEEEeeeeeCCceEEEEEecC---CeEEEEECCCCCceEEecCCCCceEEEEEccCCCE
Q 001386 471 DAVTG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543 (1088)
Q Consensus 471 d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 543 (1088)
.-... .-++..-.|...|..+.||. .|.+|++...+ ..|.|.++.....+..+....+.+.++.|+|...+
T Consensus 503 ~~~~~~e~~~~v~~~I~~~k~i~~vtWHr--kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~ 580 (733)
T KOG0650|consen 503 SRASLDELEKGVCIVIKHPKSIRQVTWHR--KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPY 580 (733)
T ss_pred chhhhhhhccceEEEEecCCccceeeeec--CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCce
Confidence 64421 11344556899999999975 55699887664 46899999888777777778889999999999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC-eeeEEEeCCCCC
Q 001386 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGL 622 (1088)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~ 622 (1088)
|++++ ...|++||+..+..++.+.... ..|..++.+|.|..++.++.|+.+..+|+.-. ++.+++..|..
T Consensus 581 lfVaT-----q~~vRiYdL~kqelvKkL~tg~---kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~- 651 (733)
T KOG0650|consen 581 LFVAT-----QRSVRIYDLSKQELVKKLLTGS---KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEK- 651 (733)
T ss_pred EEEEe-----ccceEEEehhHHHHHHHHhcCC---eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhh-
Confidence 99887 4459999999888887776655 68999999999999999999999999999754 56677776644
Q ss_pred CCCceEEEecCCCEEEEEeCCCcEEEEeCC------CC---CcccccccccCc----ceeeeecCCCcceeccccCCcee
Q 001386 623 PENPRICFNKNGTLLAVIANENRIKILETP------ES---NSVDAAGVLSDN----LRKLSVNPISTVTGAGIANGSVS 689 (1088)
Q Consensus 623 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~------~~---~~~~~~~~~~~~----v~~~~~~p~~~~~~~~~~~~~~~ 689 (1088)
.+.+|+|++.-.++++|+.||++.|+--. .+ -++..+++|... |..+.|+
T Consensus 652 -avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wH---------------- 714 (733)
T KOG0650|consen 652 -AVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWH---------------- 714 (733)
T ss_pred -hhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeeccc----------------
Confidence 68999999999999999999999987432 11 233445555543 4444455
Q ss_pred ecCCCCCCCCcccccccCccceec
Q 001386 690 VNEDPKEDVKPEISVEAENKSEVE 713 (1088)
Q Consensus 690 ~~~~~~~~~~~l~~~~~d~~i~vw 713 (1088)
|...++++++.|++|++|
T Consensus 715 ------P~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 715 ------PRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ------CCCceEEecCCCceEEee
Confidence 668889999999999998
No 145
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.88 E-value=3.7e-21 Score=195.81 Aligned_cols=253 Identities=19% Similarity=0.320 Sum_probs=202.2
Q ss_pred ecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEEccCCCcc-------cceeEeccCCCCEEEEEecCCCCcEEEEEEeC
Q 001386 392 VRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDA-------RQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 463 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~-dg~~las~~~dg~i~vwd~~~~~~~-------~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~ 463 (1088)
.-.|.+.|+.+..-| +...+|+.+..+.|.|||...-... ++-..+.+|...-..++|++.... .+++++.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~ 198 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSD 198 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccC
Confidence 345899999999999 4566777788899999999754322 233368899998888999998776 7999999
Q ss_pred CCcEEEEeCCCCc-------eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECC--CCCceEEecCCCCceEE
Q 001386 464 DKTIKVWDAVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD--SLGARVDYDAPGLGCTR 534 (1088)
Q Consensus 464 d~~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~ 534 (1088)
|++|++||+.... ....+.+|...|..++|++... .++++++.|+.+.|||++ +.+.......|...+.|
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 9999999987532 2467889999999999998754 689999999999999999 55666778889999999
Q ss_pred EEEccCCCE-EEEEeeCCCCceeEEEEeCCCC-ceeEEEeccccccccEEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCe
Q 001386 535 MAYSANGRR-LFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQ 611 (1088)
Q Consensus 535 ~~~s~~g~~-l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~ 611 (1088)
++|+|-+.. ||+++. +++|.+||+++. +.+.++.+|. ..|..+.|+|+. ..+++++.|+.+.+||+..-.
T Consensus 278 ~~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~---dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHE---DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG 350 (422)
T ss_pred EEeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCC---cceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence 999996655 555544 666999999864 4677888888 999999999986 456678899999999987522
Q ss_pred ee------------EEEeCCCCCCCCceEEEecCCC-EEEEEeCCCcEEEEeCCC
Q 001386 612 LL------------TTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPE 653 (1088)
Q Consensus 612 ~~------------~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~ 653 (1088)
.. -.+...++...|..+.|+|+.. .+++.+.|+.+.||+...
T Consensus 351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 11 1244445666799999999655 577888999999999874
No 146
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=2e-20 Score=195.48 Aligned_cols=321 Identities=15% Similarity=0.230 Sum_probs=242.0
Q ss_pred eEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCC--EEEEEeCCCc
Q 001386 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLAVIANENR 645 (1088)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~ 645 (1088)
-..+.||. +.|.++...|.|.+|++|+.||+|+||.+.+|.++.++...+ .|.|++|+|.+. .||++....
T Consensus 393 ~lvyrGHt---g~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---~I~~vaw~P~~~~~vLAvA~~~~- 465 (733)
T KOG0650|consen 393 ALVYRGHT---GLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS---EIRSVAWNPLSDLCVLAVAVGEC- 465 (733)
T ss_pred eeeEeccC---CeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc---eeEEEEecCCCCceeEEEEecCc-
Confidence 34567777 999999999999999999999999999999999999998765 489999999664 455555444
Q ss_pred EEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccc----cccCccceeccccccC--
Q 001386 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS----VEAENKSEVEKPLFAR-- 719 (1088)
Q Consensus 646 i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~d~~i~vw~~~~~~-- 719 (1088)
+.|.+..-|..+..-. ....+++ ...+..+-.|.-...+
T Consensus 466 ~~ivnp~~G~~~e~~~-----------------------------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~ 510 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGP-----------------------------------TKELLASAPNESEPDAAVVTWSRASLDEL 510 (733)
T ss_pred eEEeCccccchhhhcc-----------------------------------hhhhhhcCCCccCCcccceeechhhhhhh
Confidence 6666555442211100 0111111 1223456677744222
Q ss_pred -CCcceeeecCCccccccEEEEEEecCCceEEEeccc---cceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCC
Q 001386 720 -PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDS 795 (1088)
Q Consensus 720 -~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1088)
.+.+..+. |...|..+.|...|.+|++...+ ..|.|+++..... + ..+.
T Consensus 511 ~~~v~~~I~-----~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s------------------Q--~PF~-- 563 (733)
T KOG0650|consen 511 EKGVCIVIK-----HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS------------------Q--SPFR-- 563 (733)
T ss_pred ccceEEEEe-----cCCccceeeeecCCceEEEeccCCCcceEEEEecccccc------------------c--Cchh--
Confidence 22233333 67799999999999999887663 5677777654432 1 1111
Q ss_pred CCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc-ee
Q 001386 796 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EV 874 (1088)
Q Consensus 796 ~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~-~~ 874 (1088)
-..+.|.++.|+|...++++++...|+|||+..++.+..+......|..++++| +|.-|+.|+.|+.+..||+.-+ +.
T Consensus 564 kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli~gs~d~k~~WfDldlsskP 642 (733)
T KOG0650|consen 564 KSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLILGSYDKKMCWFDLDLSSKP 642 (733)
T ss_pred hcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEEEecCCCeeEEEEcccCcch
Confidence 256788999999999999999999999999999888888888888999999999 8888999999999999999754 67
Q ss_pred eeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCC--C--ceeeeeeeecCCCCccC-CCCeEEEEEcCCCCEEEE
Q 001386 875 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG--W--GIQTCRSLQTPDGVMTL-APSETHIQFHKDQTRFLL 949 (1088)
Q Consensus 875 ~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~--~--~~~~~~~~~~~~~~~~~-~~~v~~~~fs~dg~~l~~ 949 (1088)
.+++.-|...|++|+|++.-.++++|+.||++.|+--.- . +......++.+.+|... ...|..+.|+|..-+|.+
T Consensus 643 yk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfs 722 (733)
T KOG0650|consen 643 YKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFS 722 (733)
T ss_pred hHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEe
Confidence 788899999999999999999999999999999885321 1 11124456677777542 235889999999999999
Q ss_pred -EeCCeEEEE
Q 001386 950 -VHETHLAIY 958 (1088)
Q Consensus 950 -~~d~~i~vw 958 (1088)
|.|++|++|
T Consensus 723 AGAd~tirlf 732 (733)
T KOG0650|consen 723 AGADGTIRLF 732 (733)
T ss_pred cCCCceEEee
Confidence 789999998
No 147
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=5.6e-21 Score=205.93 Aligned_cols=237 Identities=17% Similarity=0.230 Sum_probs=195.1
Q ss_pred CCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecC-CCEEEEEe-CCcEE
Q 001386 745 GGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSAS-GGVIS 822 (1088)
Q Consensus 745 ~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~~~~-dg~i~ 822 (1088)
+.++|++++.+|.|.+||+..... ...+.. +. .|...+.++.|++- ..+|++|+ ||+|+
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~r---------------nk~l~~--f~--EH~Rs~~~ldfh~tep~iliSGSQDg~vK 159 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIR---------------NKLLTV--FN--EHERSANKLDFHSTEPNILISGSQDGTVK 159 (839)
T ss_pred hhhhheeecCCCcEEEEecCcccc---------------chhhhH--hh--hhccceeeeeeccCCccEEEecCCCceEE
Confidence 456788899999999999875311 000111 11 38999999999984 56777887 99999
Q ss_pred EEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc-eeeeeeccccCCeeEEEECCCCCEEEEEe
Q 001386 823 LYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDALNILVSSG 901 (1088)
Q Consensus 823 iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~-~~~~~l~~h~~~V~~l~~s~dg~~las~s 901 (1088)
+||+...+...++.+....|+.+.|+|..+..++++.+.|.+++||++.. ++...+.+|.++|.|+.|+|++.+|||||
T Consensus 160 ~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG 239 (839)
T KOG0269|consen 160 CWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG 239 (839)
T ss_pred EEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecC
Confidence 99999999999999988999999999988899999999999999999864 56778899999999999999999999999
Q ss_pred CCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE----EeCCeEEEEEcCcceeeeeeecCCCcCE
Q 001386 902 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL----VHETHLAIYEAEELTCLKQWFPISSVPI 977 (1088)
Q Consensus 902 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~----~~d~~i~vwd~~~~~~~~~~~~~h~~~v 977 (1088)
.|++|+|||+.+++.....++.... ++..++|-|+..+.++ ..|..|+|||++..-.....+..|...+
T Consensus 240 RDK~vkiWd~t~~~~~~~~tInTia-------pv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~v 312 (839)
T KOG0269|consen 240 RDKMVKIWDMTDSRAKPKHTINTIA-------PVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSV 312 (839)
T ss_pred CCccEEEEeccCCCccceeEEeecc-------eeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccc
Confidence 9999999999987655555555443 5899999999876554 2678899999998777777778899999
Q ss_pred EEEEEee-CCCEEEEEeCCCcEEEEEcCCCc
Q 001386 978 SQATFSC-DCRMVFTSFVDGTLSIHEASNLE 1007 (1088)
Q Consensus 978 ~~l~fs~-dg~~l~s~s~dg~v~vwd~~~~~ 1007 (1088)
+.++|-. |-..+.+++.||+|..-.+.++.
T Consensus 313 t~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 313 TGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred cceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 9999965 55678899999998776655553
No 148
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1e-21 Score=209.66 Aligned_cols=239 Identities=11% Similarity=0.205 Sum_probs=214.0
Q ss_pred eecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
+....|+..|.|+..-..++ .+++|+.|..+-+|.+..-..+.. +.+|+.+|.++.|+++
T Consensus 22 ~~~~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S-------------------~~~hespIeSl~f~~~ 81 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITS-------------------LTGHESPIESLTFDTS 81 (825)
T ss_pred hhhhhhhhhhceeeeeccce-eeccCCCceeeccccccCCchhhe-------------------eeccCCcceeeecCcc
Confidence 45567888999999866666 899999999999998876554433 7889999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCcc
Q 001386 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1088)
Q Consensus 408 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1088)
..+|++|+.+|+|++||++.++.++ +|.+|...+..+.|+|-+. +.++|+.|+.+++||++...|.+.+.+|...
T Consensus 82 E~LlaagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v 156 (825)
T KOG0267|consen 82 ERLLAAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRV 156 (825)
T ss_pred hhhhcccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcce
Confidence 9999999999999999999998777 7889999999999999999 7899999999999999999999999999999
Q ss_pred EEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCce
Q 001386 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1088)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1088)
|..+.| .++|.++++++.|..+++||+..++....+..|...+.++.|+|..-.++.|+. +.++++||+++.+.
T Consensus 157 v~~l~l--sP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 157 VDVLRL--SPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEV 230 (825)
T ss_pred eEEEee--cCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEE
Confidence 999999 568899999999999999999999999999999999999999999999998876 56699999999888
Q ss_pred eEEEeccccccccEEEEEEeCCCCEEEEEeCCC
Q 001386 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH 600 (1088)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg 600 (1088)
+....... ..|.+..|+|++..+++|....
T Consensus 231 I~s~~~~~---~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 231 ISSGKPET---DGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeccCCcc---CCceeeeecCCceeeecCchhh
Confidence 87777666 8899999999999988876543
No 149
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=6.5e-20 Score=193.42 Aligned_cols=289 Identities=16% Similarity=0.138 Sum_probs=205.1
Q ss_pred CceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEE
Q 001386 746 GQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLY 824 (1088)
Q Consensus 746 g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iw 824 (1088)
...|+.+..+|.|.+++....... ++ ++.+. ....|...|..+.+-|....|++++ |.++++|
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr-----------~e--e~~lk---~~~aH~nAifDl~wapge~~lVsasGDsT~r~W 127 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFR-----------LE--ERQLK---KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPW 127 (720)
T ss_pred cceEEEecCCCceeeecchhhhcc-----------hh--hhhhc---ccccccceeEeeccCCCceeEEEccCCceeeee
Confidence 345677778999999986543221 01 11011 1124999999999999667778776 8899999
Q ss_pred EcCCceeEEE--ecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce---------------------------ee
Q 001386 825 IVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE---------------------------VI 875 (1088)
Q Consensus 825 d~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~---------------------------~~ 875 (1088)
|+++.+++.. +.+|.+.+.+++|.|.|...+++|+.||.|.|||++-.. .+
T Consensus 128 dvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~ 207 (720)
T KOG0321|consen 128 DVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRI 207 (720)
T ss_pred eeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccc
Confidence 9999998877 889999999999999888999999999999999986321 11
Q ss_pred eeeccccCCeeE---EEECCCCCEEEEEeC-CCcEEEEEcCCCceee-eeeeecC--CCCccCCCCeEEEEEcCCCCEEE
Q 001386 876 SKLEGHSKRVTG---LVFSDALNILVSSGG-DAQIFVWDVDGWGIQT-CRSLQTP--DGVMTLAPSETHIQFHKDQTRFL 948 (1088)
Q Consensus 876 ~~l~~h~~~V~~---l~~s~dg~~las~s~-Dg~i~iwd~~~~~~~~-~~~~~~~--~~~~~~~~~v~~~~fs~dg~~l~ 948 (1088)
....+|.+.|.+ +.+..|...||++|. |+.|+|||+....... ....... ..+......+.++.....|.+|.
T Consensus 208 ~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~ 287 (720)
T KOG0321|consen 208 RKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLF 287 (720)
T ss_pred cccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEE
Confidence 223445566666 666678899999987 9999999998743211 1111111 11111123577788888888888
Q ss_pred E-EeCCeEEEEEcCcceee-eeeecCCC--cCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCcc
Q 001386 949 L-VHETHLAIYEAEELTCL-KQWFPISS--VPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC 1024 (1088)
Q Consensus 949 ~-~~d~~i~vwd~~~~~~~-~~~~~~h~--~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 1024 (1088)
+ +.|+.|+.|++.+...- ...+.++. .--..-..|||+.+|++|+.|...++|.+.+.+.-.... . +
T Consensus 288 AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l----~-----G 358 (720)
T KOG0321|consen 288 ASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL----L-----G 358 (720)
T ss_pred EEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh----h-----C
Confidence 7 79999999999865432 11222331 111233579999999999999999999999887543332 1 2
Q ss_pred ccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Q 001386 1025 LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1059 (1088)
Q Consensus 1025 ~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~ 1059 (1088)
+.+...+++|.|.+-.-++++++|.++.+|++...
T Consensus 359 ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 359 HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred cceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 33556778888866667888999999999999553
No 150
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=5.4e-20 Score=194.00 Aligned_cols=291 Identities=16% Similarity=0.203 Sum_probs=208.7
Q ss_pred eeec--CCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCC
Q 001386 340 MDFH--PVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417 (1088)
Q Consensus 340 v~~s--pdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~d 417 (1088)
+.|+ |+.+++||.+..||.|.++|.....-.. +.+. ......|.+.|..++|-|-...|++++.|
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~---------ee~~----lk~~~aH~nAifDl~wapge~~lVsasGD 121 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRL---------EERQ----LKKPLAHKNAIFDLKWAPGESLLVSASGD 121 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcch---------hhhh----hcccccccceeEeeccCCCceeEEEccCC
Confidence 4454 4556799999999999999987653220 0010 01145699999999999977789999999
Q ss_pred CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc--------------------e
Q 001386 418 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--------------------R 477 (1088)
Q Consensus 418 g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~--------------------~ 477 (1088)
.++++||++++++.... .+.||.+.|.+++|.|++.. .+++|+.||.|.|||++-.. .
T Consensus 122 sT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp 199 (720)
T KOG0321|consen 122 STIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP 199 (720)
T ss_pred ceeeeeeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence 99999999998876643 47799999999999999887 89999999999999985321 0
Q ss_pred -------eEEeccCCccEEE---EeeeeeCCceEEEEEec-CCeEEEEECCCCCceE--------EecCC---CCceEEE
Q 001386 478 -------TYSFEGHGAPVYS---LCPHAKENIHFIFSISV-DGKIKAWLYDSLGARV--------DYDAP---GLGCTRM 535 (1088)
Q Consensus 478 -------~~~~~~~~~~v~~---~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~--------~~~~~---~~~v~~~ 535 (1088)
+.....+...|.+ +.+ ..|...|++++. |+.|++||++...... .+..+ ...+.++
T Consensus 200 skp~~kr~~k~kA~s~ti~ssvTvv~--fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL 277 (720)
T KOG0321|consen 200 SKPLKKRIRKWKAASNTIFSSVTVVL--FKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNL 277 (720)
T ss_pred CchhhccccccccccCceeeeeEEEE--EeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEE
Confidence 1111223334433 222 235568888887 9999999998755432 22222 2367888
Q ss_pred EEccCCCEEEEEeeCCCCceeEEEEeCCCC--ceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeee
Q 001386 536 AYSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 613 (1088)
Q Consensus 536 ~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~ 613 (1088)
.....|.+|++.+. ++.|+.||+.+- ..+..+.++..... -..-..+|++.++++|+.|...++|.+.+.+.-
T Consensus 278 ~lDssGt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf-~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~ 352 (720)
T KOG0321|consen 278 ILDSSGTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSF-YVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP 352 (720)
T ss_pred EecCCCCeEEEEec----CCcEEEEeccccCcCchhhccCccccee-eeeeecCCCCceEeccCCCcceeeeeecCccCC
Confidence 88888999888775 556999998754 33445555441111 222357899999999999999999999875533
Q ss_pred E-EEeCCCCCCCCceEEEecC-CCEEEEEeCCCcEEEEeCCCC
Q 001386 614 T-TIDAGGGLPENPRICFNKN-GTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 614 ~-~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
. .+.+ +...|.+++|.|. -.-++++++|..+++|++..+
T Consensus 353 ~~~l~G--ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 353 PALLLG--HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hhhhhC--cceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 2 3333 3446899999883 345677799999999999654
No 151
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=1.2e-19 Score=176.18 Aligned_cols=295 Identities=15% Similarity=0.260 Sum_probs=213.9
Q ss_pred eecccCCCCceeeeecC----CCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEE
Q 001386 328 QTLIEGSSSPMSMDFHP----VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~sp----dg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1088)
+.+++|+.+|..++|.+ +...++|+.+. ..+.||......-+.. ++...-.+|......++
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~--------------lq~y~D~d~~Esfytcs 96 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRL--------------LQSYADEDHDESFYTCS 96 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceee--------------eeeccCCCCCcceEEEE
Confidence 45678988999999984 33346666554 6788888865432211 12222345888899999
Q ss_pred ECCCC----CEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001386 404 WSPDG----SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1088)
Q Consensus 404 ~s~dg----~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~ 479 (1088)
|+-|. -+||+|+.-|.|+|.|+.++++.+ .+.+|...|+.+.|.|+..+ +++++|.|.+|++||++++.|+.
T Consensus 97 w~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~ 172 (385)
T KOG1034|consen 97 WSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVA 172 (385)
T ss_pred EEecCCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEE
Confidence 98753 478999999999999999998776 68899999999999999987 79999999999999999999998
Q ss_pred Ee---ccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEE------e----------------------cCC
Q 001386 480 SF---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD------Y----------------------DAP 528 (1088)
Q Consensus 480 ~~---~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~------~----------------------~~~ 528 (1088)
.| .+|.+.|.++.|+ .+|.++++++.|..+++|++...+.... + ..|
T Consensus 173 VfGG~egHrdeVLSvD~~--~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diH 250 (385)
T KOG1034|consen 173 VFGGVEGHRDEVLSVDFS--LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIH 250 (385)
T ss_pred EecccccccCcEEEEEEc--CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccc
Confidence 87 6799999999995 4667999999999999999974321110 0 011
Q ss_pred CCceEEEEEccCCCEEEEEeeCCCCceeEEEEeC-CCCce-------------eEEEeccccccccEEEEE--EeCCCCE
Q 001386 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE-SEGAI-------------KRTYQGLQLQHNSVSVVH--FDTAKDQ 592 (1088)
Q Consensus 529 ~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~-~~~~~-------------~~~~~~~~~~~~~v~~~~--~~~~~~~ 592 (1088)
...|.|+.|- |.++++-+. ++.|..|.. +-++. +..+.-. ...+.-+. |.|-++.
T Consensus 251 rnyVDCvrw~--gd~ilSksc----enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~---~c~iWfirf~~d~~~~~ 321 (385)
T KOG1034|consen 251 RNYVDCVRWF--GDFILSKSC----ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP---MCDIWFIRFAFDPWQKM 321 (385)
T ss_pred cchHHHHHHH--hhheeeccc----CceEEEEecchhhhhhhccCCCccceeeeeEeccC---ccceEEEEEeecHHHHH
Confidence 1122222222 355555432 556999987 22221 1222222 24555554 4566889
Q ss_pred EEEEeCCCcEEEEEcCCCeee--EEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCC
Q 001386 593 ILAAGDDHVIKIWDMNKVQLL--TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
|+.|.+.|.|.+||++...+. .++..+.....|...+|+.||.+|+..++|++|.-||..
T Consensus 322 la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred HhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999999999999999876552 333333444568999999999999999999999999854
No 152
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2.7e-19 Score=172.33 Aligned_cols=257 Identities=13% Similarity=0.179 Sum_probs=190.6
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCC-cccceeEeccCCCCEEEEEecCC--CCcEEEEEEeCCCcEE
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK 468 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~s~d~~i~ 468 (1088)
-.+|..-|.++.|.+-|+++|+|+.|++|+|||.+.+. ........+.|.+.|..+.|.+. |+ .+++++.|+++.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence 56799999999999999999999999999999965432 23444467899999999999764 56 899999999999
Q ss_pred EEeCCC------C---ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceE------Eec-------
Q 001386 469 VWDAVT------G---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV------DYD------- 526 (1088)
Q Consensus 469 vwd~~~------~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~------~~~------- 526 (1088)
||.-.. | ....++......|+.+.|.|..-|-.+++++.||.+|||+.-..-... .+.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 997421 1 123566778899999999999999999999999999999764332211 111
Q ss_pred CCCCceEEEEEccC---CCEEEEEeeCC-CCceeEEEEeCCCC--c--eeEEEeccccccccEEEEEEeCCC----CEEE
Q 001386 527 APGLGCTRMAYSAN---GRRLFSCGTSK-EGESFLVEWNESEG--A--IKRTYQGLQLQHNSVSVVHFDTAK----DQIL 594 (1088)
Q Consensus 527 ~~~~~v~~~~~s~~---g~~l~~~~~~~-~~~~~i~iwd~~~~--~--~~~~~~~~~~~~~~v~~~~~~~~~----~~l~ 594 (1088)
.+..+..|+.|+|. ..+|++++.+. ...+.++||....+ + .+..+.+|. .+|+.++|.|+- ..++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~---dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT---DPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC---CcceeeeeccccCCceeeEE
Confidence 23446789999873 35677776431 11234666654432 2 334455555 999999999973 5688
Q ss_pred EEeCCCcEEEEEcCCCe-----------------eeEEEe-CCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 001386 595 AAGDDHVIKIWDMNKVQ-----------------LLTTID-AGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 595 ~~s~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
+++.|| |+||++.... .+..+. ...+...|..+.|+-.|..|++.++||.|++|...-.
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhh
Confidence 899999 9999987311 112222 2244557999999999999999999999999987643
No 153
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=1.3e-19 Score=181.25 Aligned_cols=306 Identities=15% Similarity=0.160 Sum_probs=218.1
Q ss_pred cccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCC
Q 001386 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1088)
Q Consensus 330 l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~ 409 (1088)
++.|+ +|..+.|.+++.-.+|+|+.|..|+||.++.+..-... ...-....|..|...|+++.|+|+|.
T Consensus 10 wH~~~-pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----------~~V~y~s~Ls~H~~aVN~vRf~p~ge 78 (434)
T KOG1009|consen 10 WHDHE-PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----------MKVEYLSSLSRHTRAVNVVRFSPDGE 78 (434)
T ss_pred ecCCC-ceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----------eeEEEeecccCCcceeEEEEEcCCcC
Confidence 34565 99999999988756999999999999999876543210 00111234888999999999999999
Q ss_pred EEEEEeCCCEEEEEEcc--------C-----CCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc
Q 001386 410 LLGVAYSKHIVQLYAYH--------G-----GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~--------~-----~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~ 476 (1088)
.||+|+++|.|.+|... + .+.......+.+|...|..++|+||+. ++++++.|..+++||+..|.
T Consensus 79 lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~ 156 (434)
T KOG1009|consen 79 LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQ 156 (434)
T ss_pred eeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccce
Confidence 99999999999999876 3 111223446789999999999999999 89999999999999999999
Q ss_pred eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEec-------------------CCC----CceE
Q 001386 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------------------APG----LGCT 533 (1088)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------------~~~----~~v~ 533 (1088)
.+..+.+|...+..++|.| -++++++-+.|...+.+.+...+...... .|. .-..
T Consensus 157 l~~~~~dh~~yvqgvawDp--l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 157 LLAILDDHEHYVQGVAWDP--LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred eEeeccccccccceeecch--hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 9999999999999999955 55789998888876666654433221110 011 1235
Q ss_pred EEEEccCCCEEEEEeeCCCC-----ceeEEEEeCCC-CceeEEEeccccccccEEEEEEeC------------------C
Q 001386 534 RMAYSANGRRLFSCGTSKEG-----ESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDT------------------A 589 (1088)
Q Consensus 534 ~~~~s~~g~~l~~~~~~~~~-----~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~------------------~ 589 (1088)
.++|+|||..+++...--+- .+..++++-.. .++...+.+.. .....+.|+| -
T Consensus 235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~---k~~lavr~~pVy~elrp~~~~~~~~~lpy 311 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPK---KPALAVRFSPVYYELRPLSSEKFLFVLPY 311 (434)
T ss_pred hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCC---cceEEEEeeeeEEEecccccccccccccc
Confidence 67899999999875431110 22344554331 12222333322 3334444433 2
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 590 KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1088)
Q Consensus 590 ~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 655 (1088)
+-.++.++ ...|++||.++-.++.....- +...++.++|++||..++..+.||-..+..++..+
T Consensus 312 rlvfaiAt-~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 312 RLVFAIAT-KNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred ceEEEEee-cceEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 22344444 467999999998888776532 23468999999999999999999998887776553
No 154
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=9.2e-21 Score=204.29 Aligned_cols=244 Identities=15% Similarity=0.249 Sum_probs=194.1
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCC---CcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-CCCEE
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS---GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL 411 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~-dg~~l 411 (1088)
....|+|+.-...+||+++..|.|.+||+.. .+.+. .+..|+..|.++.|++ ...+|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~-------------------~f~EH~Rs~~~ldfh~tep~il 149 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLT-------------------VFNEHERSANKLDFHSTEPNIL 149 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhh-------------------HhhhhccceeeeeeccCCccEE
Confidence 4556777765555899999999999999987 22222 2778999999999999 67889
Q ss_pred EEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC-CceeEEeccCCccEEE
Q 001386 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTYSFEGHGAPVYS 490 (1088)
Q Consensus 412 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~-~~~~~~~~~~~~~v~~ 490 (1088)
++|+.||+|++||+...+... ++.+....|..+.|+|...+ .++++...|.+++||++. .++...+..|.++|.+
T Consensus 150 iSGSQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c 225 (839)
T KOG0269|consen 150 ISGSQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLC 225 (839)
T ss_pred EecCCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEE
Confidence 999999999999999876555 56778899999999997665 899999999999999986 4667888999999999
Q ss_pred EeeeeeCCceEEEEEecCCeEEEEECCCCCceEEec-CCCCceEEEEEccCCCE-EEEEeeCCCCceeEEEEeCCCC-ce
Q 001386 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRR-LFSCGTSKEGESFLVEWNESEG-AI 567 (1088)
Q Consensus 491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~g~~-l~~~~~~~~~~~~i~iwd~~~~-~~ 567 (1088)
+.|+| ++.+||+|+.|++|+|||+.+........ ....++.++.|-|+..+ |++++.- .+..|++||++.. -+
T Consensus 226 ~nwhP--nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv--~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 226 LNWHP--NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMV--VDTSVHVWDVRRPYIP 301 (839)
T ss_pred EeecC--CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhcc--ccceEEEEeecccccc
Confidence 99977 67899999999999999998655433332 33458899999998765 5555432 3666999999865 34
Q ss_pred eEEEeccccccccEEEEEEeC-CCCEEEEEeCCCcEEEEEcCC
Q 001386 568 KRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNK 609 (1088)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~ 609 (1088)
..++..|. ..++.++|.. |...+.+++.||+|..-..++
T Consensus 302 ~~t~~eH~---~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 302 YATFLEHT---DSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred ceeeeccC---ccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence 56677777 8899999965 456778888888876555444
No 155
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=4.1e-20 Score=187.04 Aligned_cols=243 Identities=15% Similarity=0.182 Sum_probs=189.9
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceeEe------------------ccCCCCEEEEEecCCCCcEEEEEEeCCCcEEE
Q 001386 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEI------------------DAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1088)
Q Consensus 408 g~~las~~~dg~i~vwd~~~~~~~~~~~~~------------------~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~v 469 (1088)
|+|+|.|+.|..|.|||+.--..+.+...| .+|+..|.+++|+..-++ +|+|||.|.+|++
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~l 270 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVKL 270 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEEE
Confidence 689999999999999998743332222222 279999999999988877 8999999999999
Q ss_pred EeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEee
Q 001386 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1088)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 549 (1088)
||+.+|++..++..|...|.++.|++. ...+|++|+.|++|.+.|.+........-...+.|..++|.|.....+.++.
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCC-CceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence 999999999999999999999999976 4579999999999999999854333222233457888999998877776663
Q ss_pred CCCCceeEEEEeCCCC-ceeEEEeccccccccEEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCce
Q 001386 550 SKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1088)
Q Consensus 550 ~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1088)
.+|+++-+|.+.. +++.+++.|. +.|.++++++.. ..+++++.|+.|++|++............-......|
T Consensus 350 ---ddG~v~~~D~R~~~~~vwt~~AHd---~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c 423 (463)
T KOG0270|consen 350 ---DDGTVYYFDIRNPGKPVWTLKAHD---DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHC 423 (463)
T ss_pred ---CCceEEeeecCCCCCceeEEEecc---CCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceee
Confidence 3778999999865 8999999998 899999998765 4567799999999999876444222221111223466
Q ss_pred EEEecCC-CEEEEEeCCCcEEEEeCCCCCccc
Q 001386 628 ICFNKNG-TLLAVIANENRIKILETPESNSVD 658 (1088)
Q Consensus 628 v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 658 (1088)
.++.|+- -.++.|+..+.++|||+.+...+.
T Consensus 424 ~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 424 FALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred cccCCCcceEEEecCccceEEEeecccChhHH
Confidence 7777754 467788888889999998875544
No 156
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=1.9e-19 Score=174.98 Aligned_cols=299 Identities=15% Similarity=0.208 Sum_probs=206.2
Q ss_pred cccccEEEEEEec----CCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEe
Q 001386 732 VKANKISRLTYNN----GGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 807 (1088)
Q Consensus 732 ~~~~~i~~~~~s~----~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 807 (1088)
.|..+|..++|.+ +...+++......+.+|+.+... +.++++... ...+......++++
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~----------------~ir~lq~y~-D~d~~Esfytcsw~ 98 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG----------------GIRLLQSYA-DEDHDESFYTCSWS 98 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc----------------ceeeeeecc-CCCCCcceEEEEEE
Confidence 3667788888873 33445555556688888865432 111222211 22356666677776
Q ss_pred cCC----CEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee---c
Q 001386 808 KND----AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL---E 879 (1088)
Q Consensus 808 ~dg----~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l---~ 879 (1088)
-|- -++|+++ -|.|+|.|+.+++....+.+|...|..+.|.|.+.+++++++.|.+|++|++++..++..+ .
T Consensus 99 yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~e 178 (385)
T KOG1034|consen 99 YDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVE 178 (385)
T ss_pred ecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccc
Confidence 642 3566665 7999999999999999999999999999999987889999999999999999999999887 5
Q ss_pred cccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceee-------------eeeeecCCCCcc-------CCCCeEEEE
Q 001386 880 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT-------------CRSLQTPDGVMT-------LAPSETHIQ 939 (1088)
Q Consensus 880 ~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~-------------~~~~~~~~~~~~-------~~~~v~~~~ 939 (1088)
||.+.|.++.|+++|.+++|+|.|.+|++|+++..+... ...+.....+.. +...|.|+.
T Consensus 179 gHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvr 258 (385)
T KOG1034|consen 179 GHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVR 258 (385)
T ss_pred cccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHH
Confidence 699999999999999999999999999999998543111 000111111111 001122222
Q ss_pred EcCCCCEEEE-EeCCeEEEEEc-Ccceeeeee------------ecCCCcCEEEEEEe--eCCCEEEEEeCCCcEEEEEc
Q 001386 940 FHKDQTRFLL-VHETHLAIYEA-EELTCLKQW------------FPISSVPISQATFS--CDCRMVFTSFVDGTLSIHEA 1003 (1088)
Q Consensus 940 fs~dg~~l~~-~~d~~i~vwd~-~~~~~~~~~------------~~~h~~~v~~l~fs--~dg~~l~s~s~dg~v~vwd~ 1003 (1088)
|- |.++++ +.++.|..|.. +-++.+... +.-....+.-+.|+ +-+++||.|...|.|.+||+
T Consensus 259 w~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL 336 (385)
T KOG1034|consen 259 WF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDL 336 (385)
T ss_pred HH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEEC
Confidence 21 577887 88899999987 222221111 11124455556555 45789999999999999999
Q ss_pred CCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeC
Q 001386 1004 SNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1056 (1088)
Q Consensus 1004 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l 1056 (1088)
.+.+....- .+.+.-++..++ ..+|+. |+.+|+..++|++|.-||-
T Consensus 337 ~~~ep~~~t----tl~~s~~~~tVR--Q~sfS~-dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 337 DNNEPPKCT----TLTHSKSGSTVR--QTSFSR-DGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CCCCCccCc----eEEeccccceee--eeeecc-cCcEEEEEeCCCcEEEEEe
Confidence 998764111 111222233333 467787 8899999999999999985
No 157
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=8.3e-19 Score=169.02 Aligned_cols=268 Identities=14% Similarity=0.212 Sum_probs=195.0
Q ss_pred ccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC--CC
Q 001386 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DG 408 (1088)
Q Consensus 331 ~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~--dg 408 (1088)
.+|.+-|.++.|.+-|++ +|+++.|++|+|||.....--.. |.. ..+.|.+.|..+.|.+ -|
T Consensus 10 s~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~----------~Ts-----~Wrah~~Si~rV~WAhPEfG 73 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTWS----------CTS-----SWRAHDGSIWRVVWAHPEFG 73 (361)
T ss_pred cCCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCceE----------Eee-----eEEecCCcEEEEEecCcccc
Confidence 589999999999999996 89999999999999755432211 111 1556999999999987 69
Q ss_pred CEEEEEeCCCEEEEEEccC------CCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc------
Q 001386 409 SLLGVAYSKHIVQLYAYHG------GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS------ 476 (1088)
Q Consensus 409 ~~las~~~dg~i~vwd~~~------~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~------ 476 (1088)
+.+|+++.|+++.||.-.. +..-....++....+.|+.+.|.|...-+.+++++.||.+|||+....-
T Consensus 74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~ 153 (361)
T KOG2445|consen 74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT 153 (361)
T ss_pred ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch
Confidence 9999999999999997621 1112233456677789999999998887899999999999999865432
Q ss_pred eeEEec-------cCCccEEEEeeeeeCCc-eEEEEEecC-----CeEEEEECCCCCc----eEEecCCCCceEEEEEcc
Q 001386 477 RTYSFE-------GHGAPVYSLCPHAKENI-HFIFSISVD-----GKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSA 539 (1088)
Q Consensus 477 ~~~~~~-------~~~~~v~~~~~~~~~~~-~~l~s~~~d-----g~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~ 539 (1088)
+.+.+. .+..+..|+.|+++.-. .+|+.|+.+ +.++||....... ...+..+..+|+.++|.|
T Consensus 154 Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP 233 (361)
T KOG2445|consen 154 LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAP 233 (361)
T ss_pred hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence 223333 35566778888755332 466666655 4799998765542 335678888999999999
Q ss_pred CC----CEEEEEeeCCCCceeEEEEeCCCCc-----------------eeEEEeccccccccEEEEEEeCCCCEEEEEeC
Q 001386 540 NG----RRLFSCGTSKEGESFLVEWNESEGA-----------------IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 598 (1088)
Q Consensus 540 ~g----~~l~~~~~~~~~~~~i~iwd~~~~~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~ 598 (1088)
+- ..||+++. ++ |+||++.... .+..+..+..|++.|..+.|+-.|..|.+.+.
T Consensus 234 n~Gr~y~~lAvA~k----Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 234 NIGRSYHLLAVATK----DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred ccCCceeeEEEeec----Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC
Confidence 53 35666654 33 9999887311 23333334445599999999999999999999
Q ss_pred CCcEEEEEcCC---CeeeEEEeCC
Q 001386 599 DHVIKIWDMNK---VQLLTTIDAG 619 (1088)
Q Consensus 599 dg~i~iwd~~~---~~~~~~~~~~ 619 (1088)
||.|++|...- .++...+...
T Consensus 309 DG~VRLWkany~n~~kC~sv~~~e 332 (361)
T KOG2445|consen 309 DGCVRLWKANYNNLWKCTSVLKAE 332 (361)
T ss_pred CceeeehhhhhhhhheeeeEEecc
Confidence 99999997643 3344444443
No 158
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=1e-16 Score=186.16 Aligned_cols=373 Identities=24% Similarity=0.393 Sum_probs=286.8
Q ss_pred EeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc-eeEEeccCCc-cEEEEeeeeeCCce-EEEEEec-CCeE
Q 001386 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGA-PVYSLCPHAKENIH-FIFSISV-DGKI 511 (1088)
Q Consensus 436 ~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~-~~~~~~~~~~-~v~~~~~~~~~~~~-~l~s~~~-dg~i 511 (1088)
.+..|...+..+.|.+.+. .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. .++..+. |+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccE
Confidence 3568999999999999999 78888899999999998887 6777776443 77777775 55555 5555444 9999
Q ss_pred EEEECCC-CCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCC
Q 001386 512 KAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 590 (1088)
Q Consensus 512 ~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 590 (1088)
.+|+... ......+..+...+..++|+|+++.+++++. .++.+.+|+...+..+..+.+|. ..+.++.|+|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~ 210 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS---LDGTIKLWDLRTGKPLSTLAGHT---DPVSSLAFSPDG 210 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC---CCCceEEEEcCCCceEEeeccCC---CceEEEEEcCCc
Confidence 9999998 7777888899999999999999998777743 36679999999988888888877 899999999999
Q ss_pred C-EEEEEeCCCcEEEEEcCCCeeeE-EEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCc-ccccccccCcc
Q 001386 591 D-QILAAGDDHVIKIWDMNKVQLLT-TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS-VDAAGVLSDNL 667 (1088)
Q Consensus 591 ~-~l~~~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v 667 (1088)
. .+++++.|+.|++||...+..+. .+..+... . ...|+|++.++++++.|+.+++|+...... +...
T Consensus 211 ~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~------- 280 (466)
T COG2319 211 GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS--V-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL------- 280 (466)
T ss_pred ceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc--e-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-------
Confidence 8 45555899999999988777777 46555432 2 228999998999999999999999885532 0000
Q ss_pred eeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCc
Q 001386 668 RKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ 747 (1088)
Q Consensus 668 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 747 (1088)
..|...+.++.+.|++.
T Consensus 281 ---------------------------------------------------------------~~~~~~v~~~~~~~~~~ 297 (466)
T COG2319 281 ---------------------------------------------------------------SGHSSSVLSVAFSPDGK 297 (466)
T ss_pred ---------------------------------------------------------------ecCCccEEEEEECCCCC
Confidence 12456788889999888
Q ss_pred eEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEE--eCCcEEEEE
Q 001386 748 AIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA--SGGVISLYI 825 (1088)
Q Consensus 748 ~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~dg~i~iwd 825 (1088)
.+++++.++.+.+|+...... ..... ...|...+..+.+.+++..++.+ .++.+.+|+
T Consensus 298 ~~~~~~~d~~~~~~~~~~~~~------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 298 LLASGSSDGTVRLWDLETGKL------------------LSSLT--LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred EEEEeeCCCcEEEEEcCCCce------------------EEEee--ecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 888888888889987654332 11111 11355678888884343566665 378899999
Q ss_pred cCCceeEEEecCCCCCeEEEEEcCCCCcEEEE-EeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCC
Q 001386 826 VMTFKTILTIMPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA 904 (1088)
Q Consensus 826 ~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las-g~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg 904 (1088)
.............. .+..+.+++ + ..++. +..++.+.+|+............+...+....+++++..+++++.++
T Consensus 358 ~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (466)
T COG2319 358 LRTGKPLKTLEGHS-NVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDN 434 (466)
T ss_pred cCCCceeEEecCCc-eEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCC
Confidence 98877333333222 288999998 7 55554 88999999999999888777765547799999999999999999999
Q ss_pred cEEEEEcCC
Q 001386 905 QIFVWDVDG 913 (1088)
Q Consensus 905 ~i~iwd~~~ 913 (1088)
.+++|+...
T Consensus 435 ~~~~~~~~~ 443 (466)
T COG2319 435 TIRLWDLKT 443 (466)
T ss_pred cEEEEeccC
Confidence 999999987
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=4.9e-19 Score=180.79 Aligned_cols=294 Identities=16% Similarity=0.202 Sum_probs=216.0
Q ss_pred EEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCE-EEEEeCCCcEEEEeCCCCCcccccccccCcceeeee
Q 001386 594 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL-LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV 672 (1088)
Q Consensus 594 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 672 (1088)
..++....+++||.........+..+...+.+.++.|+....+ +++.+.|..+++|.-... .. .
T Consensus 6 ~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~-~~-~------------- 70 (673)
T KOG4378|consen 6 HVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK-TP-E------------- 70 (673)
T ss_pred eeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCC-CC-c-------------
Confidence 3444455799999988777777776666667899999986642 233345777888865422 00 0
Q ss_pred cCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEe
Q 001386 673 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL 752 (1088)
Q Consensus 673 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 752 (1088)
|-+-... ....-.|++......+++++
T Consensus 71 -------------------------------------Vp~~~k~----------------~gd~~~Cv~~~s~S~y~~sg 97 (673)
T KOG4378|consen 71 -------------------------------------VPRVRKL----------------TGDNAFCVACASQSLYEISG 97 (673)
T ss_pred -------------------------------------cceeecc----------------ccchHHHHhhhhcceeeecc
Confidence 0000000 00112233333344789999
Q ss_pred ccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCcee
Q 001386 753 ASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKT 831 (1088)
Q Consensus 753 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~ 831 (1088)
+..+.|+|||+..... -..+. +|...|+++.+.-...+||+++ .|.|.|..+.++..
T Consensus 98 G~~~~Vkiwdl~~kl~--------------------hr~lk--dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~ 155 (673)
T KOG4378|consen 98 GQSGCVKIWDLRAKLI--------------------HRFLK--DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK 155 (673)
T ss_pred CcCceeeehhhHHHHH--------------------hhhcc--CCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc
Confidence 9999999999863211 11122 4899999999999999999998 68899999999998
Q ss_pred EEEecCCCC-CeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeee-eccccCCeeEEEECCC-CCEEEEEeCCCcEEE
Q 001386 832 ILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK-LEGHSKRVTGLVFSDA-LNILVSSGGDAQIFV 908 (1088)
Q Consensus 832 ~~~~~~~~~-~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~-l~~h~~~V~~l~~s~d-g~~las~s~Dg~i~i 908 (1088)
..+|....+ .++-+.|+|....+|.+++++|.|.+||+........ .+.|..+...|+|+|. ..+|++.|.|..|.+
T Consensus 156 tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~ 235 (673)
T KOG4378|consen 156 TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINI 235 (673)
T ss_pred ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEE
Confidence 888886644 5568999996666888999999999999998766544 4679999999999995 467899999999999
Q ss_pred EEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCC
Q 001386 909 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC 986 (1088)
Q Consensus 909 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg 986 (1088)
||+........... . .+...++|+++|.+|++| ..|.|..||++..+........|...|++++|-+..
T Consensus 236 yD~~s~~s~~~l~y-----~----~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 236 YDIRSQASTDRLTY-----S----HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred eecccccccceeee-----c----CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 99986432222111 1 257899999999999996 678999999998776666677899999999998754
No 160
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.9e-20 Score=211.65 Aligned_cols=299 Identities=15% Similarity=0.250 Sum_probs=228.8
Q ss_pred CceeeeecCCCCeEEEEEccc----------CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEEC
Q 001386 336 SPMSMDFHPVQHTLLLVGTNV----------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~d----------g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1088)
.-..++|||++..++|+|... .++.||.+.-...... .+..--..-....+.++|.
T Consensus 8 Rta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~d--------------lk~~~s~~s~~rF~kL~W~ 73 (1049)
T KOG0307|consen 8 RTATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSD--------------LKPVGSLQSSNRFNKLAWG 73 (1049)
T ss_pred ccceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccc--------------ccccccccccccceeeeec
Confidence 335679999998678877543 3445554432211100 0000011134677889999
Q ss_pred CCCCE----EEEEeCCCEEEEEEccC---CCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001386 406 PDGSL----LGVAYSKHIVQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1088)
Q Consensus 406 ~dg~~----las~~~dg~i~vwd~~~---~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~ 478 (1088)
+.|.. ||.|..||.|.+||... +.....+.+...|.+.|..+.|++...+ +|++|+.||.|.|||+.+-+.-
T Consensus 74 ~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~iWDlnn~~tP 152 (1049)
T KOG0307|consen 74 SYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEILIWDLNKPETP 152 (1049)
T ss_pred ccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEEEeccCCcCCC
Confidence 97766 89999999999999876 4444455577899999999999999887 7999999999999999876554
Q ss_pred EEec--cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCC--ceEEEEEccCCCEEEEEeeCCCCc
Q 001386 479 YSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCTRMAYSANGRRLFSCGTSKEGE 554 (1088)
Q Consensus 479 ~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~~~~~~~~~ 554 (1088)
.+.. .....|.+++|+.. ..+.|++++.+|.+.|||++..+.+..+..+.. .+..++|+|++..-+....+.+..
T Consensus 153 ~~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~ 231 (1049)
T KOG0307|consen 153 FTPGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSA 231 (1049)
T ss_pred CCCCCCCCcccceEeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCC
Confidence 4442 24577999999643 457899999999999999999988777766655 578899999876544444455668
Q ss_pred eeEEEEeCCC-CceeEEEeccccccccEEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec
Q 001386 555 SFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1088)
Q Consensus 555 ~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1088)
..|.+||++. ...++++++|. ..|.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+ ..+..+.|+|
T Consensus 232 PviqlWDlR~assP~k~~~~H~---~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~--nW~fdv~w~p 306 (1049)
T KOG0307|consen 232 PVIQLWDLRFASSPLKILEGHQ---RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQG--NWCFDVQWCP 306 (1049)
T ss_pred ceeEeecccccCCchhhhcccc---cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCC--cceeeeeecC
Confidence 8999999884 45677888888 899999999876 788899999999999999999999998643 3688999999
Q ss_pred CC-CEEEEEeCCCcEEEEeCCCCC
Q 001386 633 NG-TLLAVIANENRIKILETPESN 655 (1088)
Q Consensus 633 ~~-~~l~~~~~dg~i~iwd~~~~~ 655 (1088)
.. ..+++++-||.|.|+.+.+..
T Consensus 307 r~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 307 RNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCcchhhhheeccceeeeeeecCC
Confidence 55 488999999999999988653
No 161
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=8.9e-18 Score=180.82 Aligned_cols=606 Identities=12% Similarity=0.120 Sum_probs=364.4
Q ss_pred CCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCC-----
Q 001386 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG----- 408 (1088)
Q Consensus 334 ~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg----- 408 (1088)
...-.++.|+|.| ++|.|+. ..|.+-|..+-+.+.. +.-|...|+.+.|+|-.
T Consensus 15 ~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~l 72 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRDL 72 (1062)
T ss_pred cccccccccCccc--eEEEecC-ceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchhc
Confidence 3357889999999 6888875 6788999988887765 55589999999998731
Q ss_pred -------CEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecC---CCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001386 409 -------SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRT 478 (1088)
Q Consensus 409 -------~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~---d~~~l~l~s~s~d~~i~vwd~~~~~~~ 478 (1088)
-+||++...|.|.+||...+..+. .+..|..++..++|-+ +.+. +|+.-....++.+|+..+|+..
T Consensus 73 lS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k~ 148 (1062)
T KOG1912|consen 73 LSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEKF 148 (1062)
T ss_pred cCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCcee
Confidence 267788888999999999887655 5778888999998865 3434 5666666789999999999998
Q ss_pred EEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCC------ceEEecCC-CC---------------------
Q 001386 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG------ARVDYDAP-GL--------------------- 530 (1088)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~-~~--------------------- 530 (1088)
...........++.+.|-.. ..+..-+..|.+.+-+.-... ..+.+... ..
T Consensus 149 Wk~~ys~~iLs~f~~DPfd~-rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa 227 (1062)
T KOG1912|consen 149 WKYDYSHEILSCFRVDPFDS-RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASA 227 (1062)
T ss_pred eccccCCcceeeeeeCCCCc-ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcch
Confidence 88776666677777766644 344444555666665542111 11111111 00
Q ss_pred ----ceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCC--CEEEEEeCCCcEEE
Q 001386 531 ----GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK--DQILAAGDDHVIKI 604 (1088)
Q Consensus 531 ----~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~s~dg~i~i 604 (1088)
-+..++|+|.-+.++.....++ +.++|++-..++....-.. +.+.-+.+-|++ ..+++.-.||.+.+
T Consensus 228 ~fity~a~faf~p~~rn~lfi~~pre----llv~dle~~~~l~vvpier---~~akfv~vlP~~~rd~LfclH~nG~lti 300 (1062)
T KOG1912|consen 228 YFITYCAQFAFSPHWRNILFITFPRE----LLVFDLEYECCLAVVPIER---GGAKFVDVLPDPRRDALFCLHSNGRLTI 300 (1062)
T ss_pred hHHHHHHhhhcChhhhceEEEEeccc----eEEEcchhhceeEEEEecc---CCcceeEeccCCCcceEEEEecCCeEEE
Confidence 0123567887665555554333 9999999888888777655 556666676664 57889999999999
Q ss_pred EEcCCC----------------eeeEEEeCCCCCCCCceEEEecC-CCEEEEEeCCCcEEEEeCCCCCcccc--------
Q 001386 605 WDMNKV----------------QLLTTIDAGGGLPENPRICFNKN-GTLLAVIANENRIKILETPESNSVDA-------- 659 (1088)
Q Consensus 605 wd~~~~----------------~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~-------- 659 (1088)
|-.... .....+..-... .....+..|. ...++..-.+|.+.+|.+.+++....
T Consensus 301 rvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel 379 (1062)
T KOG1912|consen 301 RVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIEL 379 (1062)
T ss_pred EEeeccCccccccchhhccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccc
Confidence 976541 122222111111 1122233343 44555556678888888885532111
Q ss_pred -----------------------cccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceecccc
Q 001386 660 -----------------------AGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1088)
Q Consensus 660 -----------------------~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 716 (1088)
..+|.....+....|.+......+..+. ..+..--.+++.|...|+|.+.|+.
T Consensus 380 ~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~----n~~~~~~pLvAvGT~sGTV~vvdvs 455 (1062)
T KOG1912|consen 380 VLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGG----NTPAGTVPLVAVGTNSGTVDVVDVS 455 (1062)
T ss_pred cccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCC----CccceeeeeEEeecCCceEEEEEec
Confidence 1123334444444444433322221110 0001123457889999999999976
Q ss_pred ccCCCcceeeecCCccccccEEEEEEecCCceEEEeccc--cceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCC
Q 001386 717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN--GVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTD 794 (1088)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d--g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1088)
.+.-.... ..|...|.++.|......+-.+.+. ....+ ....+.+-++++|.......+++
T Consensus 456 t~~v~~~f------svht~~VkgleW~g~sslvSfsys~~n~~sg~-----------vrN~l~vtdLrtGlsk~fR~l~~ 518 (1062)
T KOG1912|consen 456 TNAVAASF------SVHTSLVKGLEWLGNSSLVSFSYSHVNSASGG-----------VRNDLVVTDLRTGLSKRFRGLQK 518 (1062)
T ss_pred chhhhhhh------cccccceeeeeeccceeEEEeeeccccccccc-----------eeeeEEEEEcccccccccccCCC
Confidence 54332222 2388899999998877754333321 10001 11233445666666444333332
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEc-CC---------------CCcEEEE
Q 001386 795 SNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFN-PH---------------DNNVIAI 857 (1088)
Q Consensus 795 ~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-p~---------------d~~~las 857 (1088)
..+.+|+.+..|.-|+|++..- +.-+.+||+++..+++...-.-.-++.+.|+ |. ..+..+.
T Consensus 519 -~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ 597 (1062)
T KOG1912|consen 519 -PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVL 597 (1062)
T ss_pred -CCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhceeee
Confidence 4678999999999999999997 7789999998877666555444458888887 31 1123333
Q ss_pred EeCCCeEEEEEcCC-------ceeee-eeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCc
Q 001386 858 GMDDSTILIYNARS-------SEVIS-KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM 929 (1088)
Q Consensus 858 g~~dg~i~lwd~~~-------~~~~~-~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 929 (1088)
.+ +..+++.+.. +..+. ..+...-.+..++| .+..|+.|..+|.+.+||+.....+. ......+.
T Consensus 598 ds--~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg---~~d~p~~r 670 (1062)
T KOG1912|consen 598 DS--VESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRG---VRDSPDPR 670 (1062)
T ss_pred cc--ccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccC---ccCCCCch
Confidence 33 2233333211 11111 11111122334666 46789999999999999987643111 11111111
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCc
Q 001386 930 TLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1007 (1088)
Q Consensus 930 ~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~ 1007 (1088)
.......+-|....+++-...-+-+||.+....+..+ .+.......+...-+++.-..-..|.++|+-.+....
T Consensus 671 ---a~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~si-ag~dssfrlldvdlc~~~~~~l~~d~~~Rf~~m~mks 744 (1062)
T KOG1912|consen 671 ---AHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSI-AGMDSSFRLLDVDLCEKSPLVLPNDNKERFRVMPMKS 744 (1062)
T ss_pred ---hhheecccCCCCceEEEEecCcceecccccceeeeee-ccCCcceEEEEEEecccCceecCCCCceeEEeccccC
Confidence 1233344455444455545556889999988877775 4555555555554455443333455577776655543
No 162
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=2.4e-16 Score=183.17 Aligned_cols=289 Identities=26% Similarity=0.414 Sum_probs=221.6
Q ss_pred ecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCc-ceeeeceeeeeeccccccceeeeecCCC-CCeEEEEE-C
Q 001386 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVW-S 405 (1088)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~V~~l~~-s 405 (1088)
.+..|...|.++.|.+++. .++.++.|+.+.+|+...+. .... +.++. ..+..+.+ +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~ 119 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSS 119 (466)
T ss_pred eeeeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEEC
Confidence 5678899999999999998 67888889999999999886 3322 22322 46777777 8
Q ss_pred CCCC-EEEEEeC-CCEEEEEEccC-CCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeC-CCcEEEEeCCCCceeEEe
Q 001386 406 PDGS-LLGVAYS-KHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSF 481 (1088)
Q Consensus 406 ~dg~-~las~~~-dg~i~vwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~-d~~i~vwd~~~~~~~~~~ 481 (1088)
+++. +++..+. |+.+.+||... .... ..+..|...|..++|+|++. .+++++. |+.+++|++.++..+..+
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTPGKLI---RTLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL 194 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCCCeEE---EEEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence 8888 5555444 89999999997 4333 36789999999999999999 6777775 999999999999999999
Q ss_pred ccCCccEEEEeeeeeCCce-EEEEEecCCeEEEEECCCCCceE-EecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001386 482 EGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1088)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 559 (1088)
.+|...|.++++. +++. .+++++.|+.|++||........ .+..+.... ...|++++..+++++. ++.+++
T Consensus 195 ~~~~~~v~~~~~~--~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~~ 267 (466)
T COG2319 195 AGHTDPVSSLAFS--PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIRL 267 (466)
T ss_pred ccCCCceEEEEEc--CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEEE
Confidence 9999999999997 4555 55556999999999888666655 466666664 3489999988886654 566999
Q ss_pred EeCCCCce-eEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEe--CCCCCCCCceEEEecCCCE
Q 001386 560 WNESEGAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID--AGGGLPENPRICFNKNGTL 636 (1088)
Q Consensus 560 wd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~~ 636 (1088)
|+...... ...+.+|. ..+.++.|.|++..+++++.|+.+.+|+..+........ .+.. .+..+.|.+++..
T Consensus 268 ~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 342 (466)
T COG2319 268 WDLRSSSSLLRTLSGHS---SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG--PVSSLSFSPDGSL 342 (466)
T ss_pred eeecCCCcEEEEEecCC---ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCC--ceEEEEECCCCCE
Confidence 99987665 44444444 889999999998999988888999999998877666665 3332 4677777333245
Q ss_pred EEEE-eCCCcEEEEeCCCC
Q 001386 637 LAVI-ANENRIKILETPES 654 (1088)
Q Consensus 637 l~~~-~~dg~i~iwd~~~~ 654 (1088)
++.+ ..|+.+.+|+....
T Consensus 343 ~~~~~~~d~~~~~~~~~~~ 361 (466)
T COG2319 343 LVSGGSDDGTIRLWDLRTG 361 (466)
T ss_pred EEEeecCCCcEEeeecCCC
Confidence 5554 56677777776643
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=5.6e-19 Score=180.34 Aligned_cols=294 Identities=13% Similarity=0.162 Sum_probs=219.3
Q ss_pred EEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCC-EEEEEeCCCEEEEEEccCC
Q 001386 350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGG 428 (1088)
Q Consensus 350 la~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~-~las~~~dg~i~vwd~~~~ 428 (1088)
+|+++ .+++|||+...+....+. -....-.+.++.|+.... .+|+.+.|..+++|.-...
T Consensus 7 ~aS~g--d~~kl~D~s~~~~~~~~~-----------------~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~ 67 (673)
T KOG4378|consen 7 VASTG--DKTKLSDFSDLETKSEYV-----------------HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK 67 (673)
T ss_pred eeccC--CceEEeecccccCccccc-----------------cCCCCCcceeeeccccceEEEeecCCceeEEEecccCC
Confidence 44443 679999997665432110 001123489999987654 2334456778899975543
Q ss_pred Cc-ccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEec
Q 001386 429 SD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 507 (1088)
Q Consensus 429 ~~-~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 507 (1088)
.. +.......+. .-.|++...... ++++|+..+.|+|||++...+.+.+++|...|+++.+.. ...+|++++.
T Consensus 68 ~~~Vp~~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~--~DeyiAsvs~ 141 (673)
T KOG4378|consen 68 TPEVPRVRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN--TDEYIASVSD 141 (673)
T ss_pred CCccceeeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC--CcceeEEecc
Confidence 11 1111112222 233443333334 899999999999999998888889999999999999854 5579999999
Q ss_pred CCeEEEEECCCCCceEEecCCC-CceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEE
Q 001386 508 DGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF 586 (1088)
Q Consensus 508 dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 586 (1088)
.|.|.+..+.+......+.... ..+.-+.|+|..+.+++...+ ++.|.+||+.....+..+.. .|..+...++|
T Consensus 142 gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd---~G~VtlwDv~g~sp~~~~~~--~HsAP~~gicf 216 (673)
T KOG4378|consen 142 GGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD---KGAVTLWDVQGMSPIFHASE--AHSAPCRGICF 216 (673)
T ss_pred CCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeecc---CCeEEEEeccCCCcccchhh--hccCCcCccee
Confidence 9999999999888877777664 456689999999888776532 67899999988776554432 33588999999
Q ss_pred eCCCC-EEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCC-Cccccccccc
Q 001386 587 DTAKD-QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLS 664 (1088)
Q Consensus 587 ~~~~~-~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~ 664 (1088)
+|... .|++.+.|..|.+||....+....+.... +...++|+++|.+|+.|+..|.|..||+... .++..+..|.
T Consensus 217 spsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~ 293 (673)
T KOG4378|consen 217 SPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSH---PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHD 293 (673)
T ss_pred cCCccceEEEecccceEEEeecccccccceeeecC---CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecc
Confidence 99765 56678999999999999877777776443 4689999999999999999999999999865 6677888999
Q ss_pred CcceeeeecCCC
Q 001386 665 DNLRKLSVNPIS 676 (1088)
Q Consensus 665 ~~v~~~~~~p~~ 676 (1088)
..|++++|.|..
T Consensus 294 ~sVt~vafq~s~ 305 (673)
T KOG4378|consen 294 ASVTRVAFQPSP 305 (673)
T ss_pred cceeEEEeeecc
Confidence 999999999875
No 164
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.82 E-value=1.1e-18 Score=169.29 Aligned_cols=409 Identities=10% Similarity=0.106 Sum_probs=259.2
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001386 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1088)
Q Consensus 401 ~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~ 480 (1088)
-++|||+|+++|+.+.- .+.|-|.++-+..+.+ .--..|..+.|..|.-. .+.....|+.|.+|++...+-...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf----~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF----LCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH----HHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 36899999999999766 6888898886544322 11346888999999875 566778899999999999998888
Q ss_pred eccCCccEEEEeeeeeCCc-eEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001386 481 FEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1088)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 559 (1088)
+.....++.+++|+| +| +.|.+...|-+|.+|.+.+...... ......+..++|+|||++.+.++.- +-...+.+
T Consensus 87 Ideg~agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i 162 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRR-DCKDYVQI 162 (447)
T ss_pred eccCCCcceeeeECC--CcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecc-cHHHHHHH
Confidence 988889999999955 55 6777888899999999987665432 3344456889999999999988642 22233334
Q ss_pred EeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEE
Q 001386 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV 639 (1088)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 639 (1088)
...+....++.+...+ -....+.|+|||+.+++ ||.--.-.+...... -.+..++|+|.++++++
T Consensus 163 ~~c~~W~ll~~f~~dT---~DltgieWsPdg~~laV---------wd~~Leykv~aYe~~---lG~k~v~wsP~~qflav 227 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDT---IDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYERG---LGLKFVEWSPCNQFLAV 227 (447)
T ss_pred HhhHHHHHHHhcCCCc---ccccCceECCCCcEEEE---------ecchhhheeeeeeec---cceeEEEeccccceEEe
Confidence 3334445556666555 66788999999988765 442211111122211 13688999999999999
Q ss_pred EeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccC
Q 001386 640 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 719 (1088)
Q Consensus 640 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~ 719 (1088)
|+.|+.+|+.+--+-+.+..+- |-..+ .|.+..+-..+..+
T Consensus 228 GsyD~~lrvlnh~tWk~f~efl-hl~s~--------------------------------------~dp~~~~~~ke~~~ 268 (447)
T KOG4497|consen 228 GSYDQMLRVLNHFTWKPFGEFL-HLCSY--------------------------------------HDPTLHLLEKETFS 268 (447)
T ss_pred eccchhhhhhceeeeeehhhhc-cchhc--------------------------------------cCchhhhhhhhhcc
Confidence 9999999997755443332211 10000 01110000000000
Q ss_pred CCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCC
Q 001386 720 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQE 799 (1088)
Q Consensus 720 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1088)
. ..-...++.|.|..--. +-....-.+|+.... .+++ . .........+..-
T Consensus 269 ~------------~ql~~~cLsf~p~~~~a--~~~~~se~~YE~~~~--------pv~~---~----~lkp~tD~pnPk~ 319 (447)
T KOG4497|consen 269 I------------VQLLHHCLSFTPTDLEA--HIWEESETIYEQQMT--------PVKV---H----KLKPPTDFPNPKC 319 (447)
T ss_pred h------------hhhcccccccCCCcccc--Cccccchhhhhhhhc--------ceee---e----cccCCCCCCCccc
Confidence 0 00111233333322100 000000001111000 0000 0 0000000112345
Q ss_pred CeeEEEEecCCCEEEEEeC---CcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee
Q 001386 800 AVPCFALSKNDAYLFSASG---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 876 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~ 876 (1088)
.+.-++||+|..++++-.| +.+.+||+...+....+. ...+|.+..|.| +...|+.......+++|.......+.
T Consensus 320 g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W~psg~~~V~ 397 (447)
T KOG4497|consen 320 GAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAPSGPRVVG 397 (447)
T ss_pred ccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEEcCCCceEEe
Confidence 6778999999999999876 569999998776655544 557899999999 77778877777789999877655544
Q ss_pred eeccccCCeeEEEECCCCCEEEEEeCCCc
Q 001386 877 KLEGHSKRVTGLVFSDALNILVSSGGDAQ 905 (1088)
Q Consensus 877 ~l~~h~~~V~~l~~s~dg~~las~s~Dg~ 905 (1088)
. .+..-.|..+.|.-+|..++-.+.|.-
T Consensus 398 v-P~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 398 V-PKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred c-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence 3 334467999999999999999998863
No 165
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=7.6e-18 Score=168.81 Aligned_cols=303 Identities=14% Similarity=0.173 Sum_probs=219.3
Q ss_pred cccEEEEEEecCCc-eEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCE
Q 001386 734 ANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 812 (1088)
Q Consensus 734 ~~~i~~~~~s~~g~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 812 (1088)
..++..+.|.+++. .+++++.|..|++|.+........ .........+. .|...|+++.|+|+|..
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~-----------~~~V~y~s~Ls--~H~~aVN~vRf~p~gel 79 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG-----------DMKVEYLSSLS--RHTRAVNVVRFSPDGEL 79 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCC-----------ceeEEEeeccc--CCcceeEEEEEcCCcCe
Confidence 35788888888877 899999999999999877654110 01112222233 49999999999999999
Q ss_pred EEEEe-CCcEEEEEcC--------C--------ceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceee
Q 001386 813 LFSAS-GGVISLYIVM--------T--------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 875 (1088)
Q Consensus 813 l~~~~-dg~i~iwd~~--------~--------~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~ 875 (1088)
+|+|+ +|.|.+|-.. + +.....+.+|...|..++|+| ++.++++|+-|..+++||+..|.++
T Consensus 80 LASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~ 158 (434)
T KOG1009|consen 80 LASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLL 158 (434)
T ss_pred eeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeE
Confidence 99998 6889999765 2 344566788999999999999 8999999999999999999999999
Q ss_pred eeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeee---eecCCCCccC------------CCCeEEEEE
Q 001386 876 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQTPDGVMTL------------APSETHIQF 940 (1088)
Q Consensus 876 ~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~------------~~~v~~~~f 940 (1088)
..+.+|..-|..++|.|-++++++-+.|...+++.+.......... +....+.... ......++|
T Consensus 159 ~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf 238 (434)
T KOG1009|consen 159 AILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF 238 (434)
T ss_pred eeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc
Confidence 9999999999999999999999999999977777776533221111 0100111000 023467899
Q ss_pred cCCCCEEEEE-----eCC-----eEEEEEcCcceeeeeeecCCCcCEEEEEEee--------C---------CCEEEEEe
Q 001386 941 HKDQTRFLLV-----HET-----HLAIYEAEELTCLKQWFPISSVPISQATFSC--------D---------CRMVFTSF 993 (1088)
Q Consensus 941 s~dg~~l~~~-----~d~-----~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~--------d---------g~~l~s~s 993 (1088)
+|||.+|++. ..+ ..++|+-...+.....+++-..++..+.|+| + -++++...
T Consensus 239 TPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA 318 (434)
T KOG1009|consen 239 TPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA 318 (434)
T ss_pred CCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEe
Confidence 9999999982 223 3466665544433333444456666777766 1 12344444
Q ss_pred CCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 994 VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 994 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~ 1060 (1088)
....|.|||..+...++......|.+ .+.++|++ ||..|+..+.||-+-+-.+...+
T Consensus 319 t~~svyvydtq~~~P~~~v~nihy~~---------iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 319 TKNSVYVYDTQTLEPLAVVDNIHYSA---------ITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred ecceEEEeccccccceEEEeeeeeee---------ecceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 56689999999988887766333322 25689999 89999999999977776665444
No 166
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=4.3e-17 Score=175.59 Aligned_cols=482 Identities=12% Similarity=0.120 Sum_probs=294.9
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCC----------CCcEEEEEEeCC
Q 001386 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP----------CKQISVITCGDD 464 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d----------~~~l~l~s~s~d 464 (1088)
|...-.++.|+|.| +||.|+.. .|.+-|..+-+.+. .+.-|...|+.+.|.|- ...++++++...
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~ 88 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS 88 (1062)
T ss_pred CcccccccccCccc-eEEEecCc-eEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEecccc
Confidence 34446778999866 77887654 58888988876555 67789999999999763 234578899999
Q ss_pred CcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCc--eEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEcc-CC
Q 001386 465 KTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI--HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NG 541 (1088)
Q Consensus 465 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~g 541 (1088)
|.|.+||...+..+..+..|..++..++|.+..+. .+|+.-.....+.+|+..+++.............|+.+.| |.
T Consensus 89 GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~ 168 (1062)
T KOG1912|consen 89 GRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDS 168 (1062)
T ss_pred CcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCc
Confidence 99999999999999999999999999999876554 4778888889999999999999888887777777888888 44
Q ss_pred CEEEEEeeCCCCceeEEEEeCC-------CCceeEEEecccc----------------cccc------EEEEEEeCCCCE
Q 001386 542 RRLFSCGTSKEGESFLVEWNES-------EGAIKRTYQGLQL----------------QHNS------VSVVHFDTAKDQ 592 (1088)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~-------~~~~~~~~~~~~~----------------~~~~------v~~~~~~~~~~~ 592 (1088)
+.+..-+. .+.+.+-+.- .|+..+.-..|.. .... ...++|+|.-+.
T Consensus 169 rh~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn 244 (1062)
T KOG1912|consen 169 RHFCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRN 244 (1062)
T ss_pred ceEEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhc
Confidence 44444432 3334443321 1222222222210 0000 112467887777
Q ss_pred EEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCC--CEEEEEeCCCcEEEEeCCCCCccccc-----cc-cc
Q 001386 593 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG--TLLAVIANENRIKILETPESNSVDAA-----GV-LS 664 (1088)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~-~~ 664 (1088)
++.......+.++|++-..++.......+ .+.-+.+-|++ ..|.+...||.+.+|-.......... .. ..
T Consensus 245 ~lfi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~ 322 (1062)
T KOG1912|consen 245 ILFITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLG 322 (1062)
T ss_pred eEEEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccc
Confidence 77777788899999999999988887655 35567777765 46889999999999976642111111 00 11
Q ss_pred CcceeeeecCCCcceeccccCCceeecCCCCCC-CCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEe
Q 001386 665 DNLRKLSVNPISTVTGAGIANGSVSVNEDPKED-VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN 743 (1088)
Q Consensus 665 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 743 (1088)
..+.++... ..... +.+.--|. ...++.--.+|.+.+|++..+.......... ..-+..+.|.
T Consensus 323 ~Q~~~vr~m--~~~rp---------~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~-----iel~~pf~f~ 386 (1062)
T KOG1912|consen 323 EQVHVVRPM--EEFRP---------VIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSS-----IELVLPFDFN 386 (1062)
T ss_pred cceEEEeec--hhccc---------ceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccc-----cccccccccc
Confidence 122222111 11000 00000111 2333444456777888865322111111100 0001111111
Q ss_pred c-----CCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCC-------C
Q 001386 744 N-----GGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND-------A 811 (1088)
Q Consensus 744 ~-----~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg-------~ 811 (1088)
. -...++..+.||.. ..|....... .....+-....|.| .
T Consensus 387 ~~~~~v~k~~l~~LS~dg~h-----------------------~sGs~~~~~~-----p~p~~t~~~~~p~~n~~~~~~p 438 (1062)
T KOG1912|consen 387 LSTKLVGKTSLISLSDDGSH-----------------------SSGSTCVRMR-----PMPELTKVENDPGGNTPAGTVP 438 (1062)
T ss_pred CceeehhhccccchhhcCCC-----------------------CCCceeeecc-----cCcccceeecCCCCCccceeee
Confidence 1 11122333333300 0010000000 00000011111111 2
Q ss_pred EEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEe----------CCCeEEEEEcCCceee--eee
Q 001386 812 YLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM----------DDSTILIYNARSSEVI--SKL 878 (1088)
Q Consensus 812 ~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~----------~dg~i~lwd~~~~~~~--~~l 878 (1088)
++|.|. .|+|.++|+.++...+.+..|.+.|.++.|.. .. .|++.+ .-+.+.|-|+++|... .-+
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g-~s-slvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l 516 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG-NS-SLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGL 516 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhcccccceeeeeecc-ce-eEEEeeeccccccccceeeeEEEEEcccccccccccC
Confidence 567776 79999999999999999999999999999985 33 344332 2246788899998542 222
Q ss_pred c-cccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEc
Q 001386 879 E-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH 941 (1088)
Q Consensus 879 ~-~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs 941 (1088)
+ ....+|..+..|.-|+||+..-.|.-+.+||+++-. +++...-..+ -|+.+.|+
T Consensus 517 ~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~-----~lr~mS~a~P---~it~leWs 572 (1062)
T KOG1912|consen 517 QKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLR-----MLRLMSLALP---LITVLEWS 572 (1062)
T ss_pred CCCCcCcceeeeecccCceEEEEecccchHHHhhccch-----HHHHHhhcCC---cEEEEeec
Confidence 2 356789999999999999999999999999998732 2222221111 37888887
No 167
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=3.8e-18 Score=169.90 Aligned_cols=237 Identities=16% Similarity=0.261 Sum_probs=186.4
Q ss_pred eecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEEccCCCcc----cceeEeccCCCCEEEEEecCCCCcEEEEEEeCCC
Q 001386 391 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~-dg~~las~~~dg~i~vwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~ 465 (1088)
.+.||.++|..++|+| +...||+||.|.+|.||.+..+... .+...|.+|...|..++|+|.-.+ +|++++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence 4889999999999999 7889999999999999999865442 345578999999999999999887 899999999
Q ss_pred cEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCC-ceEEEEEccCCCEE
Q 001386 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRL 544 (1088)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l 544 (1088)
+|.+||+.+|+.+.++. |...|++++| +.||.++++.+.|+.|||||.++++.+..-..|.+ .-..+.|-.+|. +
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sf--n~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSF--NRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEe--ccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 99999999999998888 9999999999 55888999999999999999999988877766654 456677889998 7
Q ss_pred EEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEE-EeCCCcEEEEEcCCCeee-EEEeCCCCC
Q 001386 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLL-TTIDAGGGL 622 (1088)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~-~~~~~~~~~ 622 (1088)
++.+.++-.+.++-+||...-+.-..+.... ....|.--.|.+|.+.++. |-.|+.||-|.+....+. .-+......
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~ 309 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK 309 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence 7777778788999999987544322222211 1345666678888887766 458999999999876532 222222222
Q ss_pred CCCceEEEecC
Q 001386 623 PENPRICFNKN 633 (1088)
Q Consensus 623 ~~v~~v~~s~~ 633 (1088)
.+-..+.|-|.
T Consensus 310 epQRG~g~mPK 320 (472)
T KOG0303|consen 310 EPQRGMGFMPK 320 (472)
T ss_pred Ccccccccccc
Confidence 33456666664
No 168
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.81 E-value=2.4e-18 Score=170.34 Aligned_cols=264 Identities=16% Similarity=0.213 Sum_probs=187.1
Q ss_pred ecccCCCCceeeeecCCC-CeEEEEEcccCcEEEEecCCCcc-eeeeceeeeeeccccccceeeeecCCCCCeEEEEECC
Q 001386 329 TLIEGSSSPMSMDFHPVQ-HTLLLVGTNVGDTGLWDVNSGQK-LFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1088)
Q Consensus 329 ~l~~h~~~V~~v~~spdg-~~lla~g~~dg~i~iwd~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~ 406 (1088)
....|.+.+..+.-++-| ..++|+-+..|.|.|||+...-. +....+.+-+ ....+...+.+|...=..++|||
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~LdWSp 221 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYGLDWSP 221 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCccceeeeccc
Confidence 345677788888888765 34677778889999999864211 1111111111 11112233788999999999999
Q ss_pred -CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC---ceeEEec
Q 001386 407 -DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSFE 482 (1088)
Q Consensus 407 -dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~---~~~~~~~ 482 (1088)
....|++|..-+.|++|...+|.-......+.+|+..|-.++|||..+. ++++||.||+|+|||++.+ .++.+ +
T Consensus 222 ~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~~~~-k 299 (440)
T KOG0302|consen 222 IKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAAVST-K 299 (440)
T ss_pred ccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccceeEe-e
Confidence 3345778877778999999987644444457789999999999998877 8999999999999999988 34444 7
Q ss_pred cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCC---CceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001386 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1088)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 559 (1088)
.|.+.|+.+.|+. +-.+|++|+.||+++|||++.- +.+..+..|..+|+++.|+|...-.+.++. .+.+|.+
T Consensus 300 Ah~sDVNVISWnr--~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg---~D~Qiti 374 (440)
T KOG0302|consen 300 AHNSDVNVISWNR--REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG---EDNQITI 374 (440)
T ss_pred ccCCceeeEEccC--CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc---CCCcEEE
Confidence 8999999999954 4449999999999999999854 456789999999999999996654444332 2667999
Q ss_pred EeCCCCce----------------eEEEeccccccccEEEEEEeCCC-CEEEEEeCCCcEEEE
Q 001386 560 WNESEGAI----------------KRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIW 605 (1088)
Q Consensus 560 wd~~~~~~----------------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iw 605 (1088)
||+....- .+.+-.|. ....+..+.|++.- .++++.+.|| +.||
T Consensus 375 WDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 375 WDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred EEeeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 99863211 01112222 12467778888764 4566666666 4444
No 169
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.81 E-value=2.8e-18 Score=174.28 Aligned_cols=263 Identities=16% Similarity=0.146 Sum_probs=196.9
Q ss_pred cCCCCCeEEEEECCC--CCEEEEEeCCCEEEEEEccCCC-cccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEE
Q 001386 393 RDPGVSVNRVVWSPD--GSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1088)
Q Consensus 393 ~~h~~~V~~l~~s~d--g~~las~~~dg~i~vwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~v 469 (1088)
.-+.+.|++++|+|. -+++|+|..-|.|-+||+.+.+ .......+..|.++|.++.|+|.+.. .+++.|.||+|+.
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s-~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS-QIYSSSYDGTIRL 261 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh-heeeeccCceeee
Confidence 337899999999994 3688999999999999995332 23344467899999999999998776 7899999999999
Q ss_pred EeCCCCce--eEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc-eEEecCCCCceEEEEEccCCCE-EE
Q 001386 470 WDAVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRR-LF 545 (1088)
Q Consensus 470 wd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~-l~ 545 (1088)
-|++++.. +.++..-...+.++.|. .+...++.+..=|...+||+++... ...+..|...|.+++++|...+ |+
T Consensus 262 ~D~~~~i~e~v~s~~~d~~~fs~~d~~--~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~la 339 (498)
T KOG4328|consen 262 QDFEGNISEEVLSLDTDNIWFSSLDFS--AESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLA 339 (498)
T ss_pred eeecchhhHHHhhcCccceeeeecccc--CCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhee
Confidence 99987643 33333344455666663 3445677777777999999998876 4566777789999999997665 56
Q ss_pred EEeeCCCCceeEEEEeCCCCceeEE-EeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEc----CCCeeeEEEeCCC
Q 001386 546 SCGTSKEGESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM----NKVQLLTTIDAGG 620 (1088)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~----~~~~~~~~~~~~~ 620 (1088)
+++. +.+.+|||++.-..... +-....|...|.++.|+|.+..|++.+.|..|+|||. ....+..++....
T Consensus 340 T~s~----D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~ 415 (498)
T KOG4328|consen 340 TASL----DQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNN 415 (498)
T ss_pred eccc----CcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccC
Confidence 6654 66799999986443332 1111224489999999999989999999999999998 3444555554332
Q ss_pred CC---CCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCccccccc
Q 001386 621 GL---PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 662 (1088)
Q Consensus 621 ~~---~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 662 (1088)
.. -.....+|.|+..++++|..-..|-|+|-..++.+..+..
T Consensus 416 ~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~ 460 (498)
T KOG4328|consen 416 RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHD 460 (498)
T ss_pred cccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccC
Confidence 11 1245678999999999999999999999998876655443
No 170
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=1e-17 Score=162.39 Aligned_cols=228 Identities=15% Similarity=0.175 Sum_probs=170.6
Q ss_pred cCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCC---eeEEEEecCCCEEEEEeCCc
Q 001386 744 NGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEA---VPCFALSKNDAYLFSASGGV 820 (1088)
Q Consensus 744 ~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~s~dg~~l~~~~dg~ 820 (1088)
|+..++++.+.+.-|++||.-+++...+ +....|... ..+++|+|||..|+.|....
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraS--------------------y~~ydh~de~taAhsL~Fs~DGeqlfaGykrc 180 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRAS--------------------YRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRC 180 (406)
T ss_pred CccceeeeccccCceeeeeccccccccc--------------------hhhhhhHHhhhhheeEEecCCCCeEeecccce
Confidence 5566777777788888887666554222 111123333 35799999999999999999
Q ss_pred EEEEEc-CCceeE--E-Eec----CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECC
Q 001386 821 ISLYIV-MTFKTI--L-TIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 892 (1088)
Q Consensus 821 i~iwd~-~~~~~~--~-~~~----~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~ 892 (1088)
|++||+ ..|..- . ++. +..+.+.+++|+|.+.+.+|+|+....+-||.-..+.++..+.+|.+.|+.+.|.+
T Consensus 181 irvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e 260 (406)
T KOG2919|consen 181 IRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE 260 (406)
T ss_pred EEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc
Confidence 999999 344321 1 111 23567899999998888999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeC-CCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCCeEEEEEcCc-ceeeeee
Q 001386 893 ALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE-LTCLKQW 969 (1088)
Q Consensus 893 dg~~las~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~vwd~~~-~~~~~~~ 969 (1088)
||+.|.+|+. |-.|..||+.... ..+-.+..|......-.-....|+|++|++| .||.|++||+++ |.....
T Consensus 261 dGn~lfsGaRk~dkIl~WDiR~~~----~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv- 335 (406)
T KOG2919|consen 261 DGNKLFSGARKDDKILCWDIRYSR----DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSV- 335 (406)
T ss_pred CcCeecccccCCCeEEEEeehhcc----chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccc-
Confidence 9999999984 6779999998633 2233333333212223345567899999996 899999999998 554444
Q ss_pred ecCCCcCEEEEEEeeCCCEEEEEeCCC
Q 001386 970 FPISSVPISQATFSCDCRMVFTSFVDG 996 (1088)
Q Consensus 970 ~~~h~~~v~~l~fs~dg~~l~s~s~dg 996 (1088)
...|...+..+++.|-=..++|++...
T Consensus 336 ~~~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 336 TGNYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred cccccccccceecCcccceeeeccCce
Confidence 556789999999999877788776553
No 171
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=5.9e-18 Score=164.11 Aligned_cols=287 Identities=14% Similarity=0.215 Sum_probs=207.9
Q ss_pred eeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccc--eeeeecCCCCCeEEEEEC-------CCC
Q 001386 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF--KTALVRDPGVSVNRVVWS-------PDG 408 (1088)
Q Consensus 338 ~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~h~~~V~~l~~s-------~dg 408 (1088)
..+.|||||.- +.+-+.|..+.+|++...---.... ....+ +..+---....|...+|- |+.
T Consensus 53 kgckWSPDGSc-iL~~sedn~l~~~nlP~dlys~~~~--------~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t 123 (406)
T KOG2919|consen 53 KGCKWSPDGSC-ILSLSEDNCLNCWNLPFDLYSKKAD--------GPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST 123 (406)
T ss_pred ccceeCCCCce-EEeecccCeeeEEecChhhcccCCC--------CccccccceeEEeccCCEEEEEEeeeccccCCCcc
Confidence 45789999995 6677899999999985321100000 00000 000011134567777775 678
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceeEeccCCCC---EEEEEecCCCCcEEEEEEeCCCcEEEEeC-CCCcee--EEe-
Q 001386 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGN---VNDLAFSAPCKQISVITCGDDKTIKVWDA-VTGSRT--YSF- 481 (1088)
Q Consensus 409 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~---v~~~~~s~d~~~l~l~s~s~d~~i~vwd~-~~~~~~--~~~- 481 (1088)
.++|+.+.+.-|++||.-+|+...... ...|... ..+++|+|||. .|+ ++....|+++|+ +.|+.- ...
T Consensus 124 ~l~a~ssr~~PIh~wdaftG~lraSy~-~ydh~de~taAhsL~Fs~DGe--qlf-aGykrcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 124 NLFAVSSRDQPIHLWDAFTGKLRASYR-AYDHQDEYTAAHSLQFSPDGE--QLF-AGYKRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred ceeeeccccCceeeeeccccccccchh-hhhhHHhhhhheeEEecCCCC--eEe-ecccceEEEeeccCCCCCCcchhhh
Confidence 899999999999999999998654332 2245443 45799999999 455 556889999998 455422 111
Q ss_pred ----ccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeE
Q 001386 482 ----EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1088)
Q Consensus 482 ----~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i 557 (1088)
.+..+-+.+++|+|. +...++.|+...++-|+.-........+.+|++.|+.+.|.++|+.|++++.. +..|
T Consensus 200 ~~~k~gq~giisc~a~sP~-~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk---~dkI 275 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPM-DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK---DDKI 275 (406)
T ss_pred hcccccccceeeeeeccCC-CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC---CCeE
Confidence 223677888899876 44689999999999999989999999999999999999999999999999853 5569
Q ss_pred EEEeCCC-CceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCC-CeeeEEEeCCCCCCCCceEEEecCCC
Q 001386 558 VEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGT 635 (1088)
Q Consensus 558 ~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~ 635 (1088)
..||++. +..+..+..|......-.-....|++++|++|+.||.|++||+.+ |..+..+..+.. .++.++++|--.
T Consensus 276 l~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd--~vNgvslnP~mp 353 (406)
T KOG2919|consen 276 LCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD--TVNGVSLNPIMP 353 (406)
T ss_pred EEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc--cccceecCcccc
Confidence 9999984 556666766662122222345578899999999999999999998 776666655543 588999999988
Q ss_pred EEEEEeCC
Q 001386 636 LLAVIANE 643 (1088)
Q Consensus 636 ~l~~~~~d 643 (1088)
++|+++..
T Consensus 354 ilatssGq 361 (406)
T KOG2919|consen 354 ILATSSGQ 361 (406)
T ss_pred eeeeccCc
Confidence 88887765
No 172
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=4.9e-17 Score=167.92 Aligned_cols=498 Identities=14% Similarity=0.097 Sum_probs=300.7
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEe------cCCCCcEEEEEEeCCCcEE
Q 001386 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF------SAPCKQISVITCGDDKTIK 468 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~------s~d~~~l~l~s~s~d~~i~ 468 (1088)
|...|.|+.|+.+...+.+++++..+.-||+.+... ... .-....|....+ -..+..-.++.++.||.+.
T Consensus 13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~---~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~ 88 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVA---KLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFV 88 (737)
T ss_pred cceeEEeecccccceEEEeccCceEEEeecccchhh-hhh---hCCcccCCccccccccccCCCCCcceEEEEcCCceEE
Confidence 777788999998877777765555555556654332 111 111111111111 0111111577788899999
Q ss_pred EEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001386 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1088)
Q Consensus 469 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 548 (1088)
+.+ +.|+.-+.+..|.+.+.+-.| ++||.-|++++.||.|++|.- ++-...++.....+|+|++|.|+...++.+.
T Consensus 89 il~-k~~rVE~sv~AH~~A~~~gRW--~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 89 ILN-KSARVERSISAHAAAISSGRW--SPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred Eec-ccchhhhhhhhhhhhhhhccc--CCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEec
Confidence 998 888888899999999999988 557778999999999999963 3333344555667899999999998888775
Q ss_pred eCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceE
Q 001386 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1088)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1088)
.+.+.|=.+.....+-..+.|. +-|.++.|++..+.+++|++|-..++||.. |..+..-..|.. +|+++
T Consensus 165 -----g~h~~IKpL~~n~k~i~WkAHD---GiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey--~ITSv 233 (737)
T KOG1524|consen 165 -----GGHISIKPLAANSKIIRWRAHD---GLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEY--AITSV 233 (737)
T ss_pred -----CCeEEEeecccccceeEEeccC---cEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhcc--ceeee
Confidence 3347777777666667778877 999999999999999999999999999975 555555555544 69999
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCc
Q 001386 629 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708 (1088)
Q Consensus 629 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 708 (1088)
+|+|+ ..++.++.. ++++ .
T Consensus 234 a~npd-~~~~v~S~n-t~R~---~-------------------------------------------------------- 252 (737)
T KOG1524|consen 234 AFNPE-KDYLLWSYN-TARF---S-------------------------------------------------------- 252 (737)
T ss_pred eeccc-cceeeeeee-eeee---c--------------------------------------------------------
Confidence 99999 666666542 3331 0
Q ss_pred cceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcce
Q 001386 709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFM 788 (1088)
Q Consensus 709 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1088)
.+..+.|..++||+||..+..+...|.+.+=-.-...
T Consensus 253 ----------------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~--------------------- 289 (737)
T KOG1524|consen 253 ----------------------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQ--------------------- 289 (737)
T ss_pred ----------------------CCCccceEEEEEcCCCceeeccccCceEEEeeeehhh---------------------
Confidence 0134678889999999999998888876542110000
Q ss_pred eeccCCCCCCCCeeEEEEecCCCEEEE-EeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 001386 789 VNDTTDSNSQEAVPCFALSKNDAYLFS-ASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 867 (1088)
Q Consensus 789 ~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lw 867 (1088)
+ . -+.+=++ .....|.+-|+.++.. ..+. ....+...+..- .+|+++. ...|++|
T Consensus 290 ---l-------------~--~~n~~~t~~~r~~I~vrdV~~~v~-d~LE-~p~rv~k~sL~Y---~hLvvaT-s~qvyiy 345 (737)
T KOG1524|consen 290 ---L-------------V--SGNLKATSKSRKSITVRDVATGVQ-DILE-FPQRVVKFSLGY---GHLVVAT-SLQVYIY 345 (737)
T ss_pred ---h-------------h--hccceeEeeccceEEeehhhhhHH-HHhh-Cccceeeeeece---eEEEEEe-ccEEEEE
Confidence 0 0 0011111 1244566777665543 2222 345566666554 2344333 3468888
Q ss_pred EcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEE
Q 001386 868 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 947 (1088)
Q Consensus 868 d~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l 947 (1088)
.-........+.+....+.-+.-+ ...+++ ...-+|.++..+.......+ +.|... .....-..|-....|
T Consensus 346 s~knwntpiiidgre~tr~lieq~-ek~fli--~dgsSi~lytyegR~~~np~----~Pg~~~--dlL~~rtlsLandtL 416 (737)
T KOG1524|consen 346 SEKNWNTPIIIDGREDTRNLIEQG-EKYFLI--LDGSSIWLYTYEGRLHLNPR----YPGSQI--DLLTWRTLSLANDTL 416 (737)
T ss_pred ecCCccCcEEEeccccchhHhhhh-hhheEE--ecCcEEEEEEecCceecCCC----CCCccc--ccccceeeecccceE
Confidence 766544444455444433222211 112233 23344666665542211110 111111 011122333334445
Q ss_pred EE--EeC-CeEEEEEc-Ccceeeeeee-cCCCcCEEEEEEe----eCCCEEEEEeCCCcEEEEEcCCCceEEEecccccc
Q 001386 948 LL--VHE-THLAIYEA-EELTCLKQWF-PISSVPISQATFS----CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYL 1018 (1088)
Q Consensus 948 ~~--~~d-~~i~vwd~-~~~~~~~~~~-~~h~~~v~~l~fs----~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~ 1018 (1088)
+. ..| ..+++||. .+|+....-. -.|...+..++.. ++++.++.-...+.+.|=.+.+.....++.....
T Consensus 417 aird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~KiGT- 495 (737)
T KOG1524|consen 417 AIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKIGT- 495 (737)
T ss_pred EeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhhhhh-
Confidence 55 233 45889998 7777653311 2345555555553 4667777777777777766655433222221111
Q ss_pred CCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 1019 RPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~ 1060 (1088)
....++|+ |..-+++|-.|+.+.||=.+...
T Consensus 496 ---------mVhtLawn--dttNiLcglqDt~fsVWy~pn~v 526 (737)
T KOG1524|consen 496 ---------MVHTLAWN--DTTNILCGLQDTCFSVWYYPNEV 526 (737)
T ss_pred ---------hhhhhhhc--cccceeeeeccceEEEEEcCCcc
Confidence 12346777 45668889999999999886644
No 173
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.80 E-value=1.4e-18 Score=172.02 Aligned_cols=175 Identities=22% Similarity=0.365 Sum_probs=147.1
Q ss_pred hhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1088)
..-+.+..+|.++=.+++|||--.--|++|..-+.|++|...+|.-... ..-+.+|+..|-.++
T Consensus 201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd----------------~~Pf~gH~~SVEDLq 264 (440)
T KOG0302|consen 201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD----------------QRPFTGHTKSVEDLQ 264 (440)
T ss_pred cCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeec----------------Cccccccccchhhhc
Confidence 4557788999999999999993222378888889999999999763321 112677999999999
Q ss_pred ECC-CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC---CceeE
Q 001386 404 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GSRTY 479 (1088)
Q Consensus 404 ~s~-dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~---~~~~~ 479 (1088)
||| ....||+||.||+|+|||+..+...... ..+.|.+.|+.|.|+.+-. +|++|+.||+++|||+++ ++++.
T Consensus 265 WSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~~~~~pVA 341 (440)
T KOG0302|consen 265 WSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQFKSGQPVA 341 (440)
T ss_pred cCCccCceEEeeecCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhccCCCcce
Confidence 999 5678999999999999999998543333 3479999999999999888 899999999999999874 67889
Q ss_pred EeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCC
Q 001386 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518 (1088)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 518 (1088)
.|+.|..+|+++.|+|..+ ..|++++.|.+|.+||+..
T Consensus 342 ~fk~Hk~pItsieW~p~e~-s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 342 TFKYHKAPITSIEWHPHED-SVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eEEeccCCeeEEEeccccC-ceEEeccCCCcEEEEEeec
Confidence 9999999999999998765 5888899999999999853
No 174
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.80 E-value=1.7e-19 Score=195.43 Aligned_cols=287 Identities=19% Similarity=0.283 Sum_probs=222.4
Q ss_pred heeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEEC
Q 001386 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1088)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1088)
.+..|.||...|.|+.|...|. ++++|+.|..++||...++.++.. ..||.+.|+.++.+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs 241 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVS 241 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccc-eEeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccc
Confidence 3466789999999999999998 699999999999999999999876 88999999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE---ec
Q 001386 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS---FE 482 (1088)
Q Consensus 406 ~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~---~~ 482 (1088)
.+..++|+++.|..|++|.+.++..+. .+.+|++.|++++|+|- .+.+.||++++||.+-.-.+.. +.
T Consensus 242 ~~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~ 312 (1113)
T KOG0644|consen 242 SNNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLK 312 (1113)
T ss_pred hhhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCC
Confidence 999999999999999999999998766 68899999999999994 3678899999999871111111 11
Q ss_pred c-CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEe
Q 001386 483 G-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1088)
Q Consensus 483 ~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd 561 (1088)
. ...-+.++.| ..++..+++++.|+.-..|.+.-.. .+...+.-+.++.+-..+.... ..+..+.+|+
T Consensus 313 ~~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~a---r~~~~~~vwn 381 (1113)
T KOG0644|consen 313 FTEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTA---RNDHRLCVWN 381 (1113)
T ss_pred cccccceeeeec--cccccccccccCCcccccchhhHhh------hhccceEEEeccccccccceee---eeeeEeeeee
Confidence 1 1233444444 4566789999999998888654211 1111122222333332222222 2256688999
Q ss_pred CCCCceeEEEeccccccccEEEEEEeCCCCEEE-EEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEE
Q 001386 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 640 (1088)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 640 (1088)
+.+|...+.+.+|. ..+..+.++|-+..++ +++.||...|||+-.|.+++..... ...+....||+||..++..
T Consensus 382 l~~g~l~H~l~ghs---d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g--h~kl~d~kFSqdgts~~ls 456 (1113)
T KOG0644|consen 382 LYTGQLLHNLMGHS---DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG--HGKLVDGKFSQDGTSIALS 456 (1113)
T ss_pred cccchhhhhhcccc---cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc--cceeeccccCCCCceEecC
Confidence 99999999999998 8999999999876664 5899999999999999988877633 2346788999999999999
Q ss_pred eCCCcEEEEeCCCCCcc
Q 001386 641 ANENRIKILETPESNSV 657 (1088)
Q Consensus 641 ~~dg~i~iwd~~~~~~~ 657 (1088)
.+-|.+.|.....++..
T Consensus 457 d~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 457 DDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred CCCCceEEeccCCCccc
Confidence 99999999988766543
No 175
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=4.3e-18 Score=172.55 Aligned_cols=258 Identities=13% Similarity=0.159 Sum_probs=185.6
Q ss_pred CCeEEEEEcccCcEEEEecCCCccee-eeceeeee-eccccccceeeeecCCCCCeEEEEECCC-CCEEEEEeCCCEEEE
Q 001386 346 QHTLLLVGTNVGDTGLWDVNSGQKLF-IRNFKVWD-IGACSMLFKTALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQL 422 (1088)
Q Consensus 346 g~~lla~g~~dg~i~iwd~~~~~~~~-~~~~~~~d-~~~~~~~~~~~~~~~h~~~V~~l~~s~d-g~~las~~~dg~i~v 422 (1088)
|. ++|.|+.|..|.|||+.=...+. ...+.--- ..............+|+..|-+++|+.+ ...||+||.|.+|++
T Consensus 192 gN-yvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 192 GN-YVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred cc-eEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 45 79999999999999996433221 00000000 0000000122235689999999999984 568899999999999
Q ss_pred EEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEE
Q 001386 423 YAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI 502 (1088)
Q Consensus 423 wd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 502 (1088)
||+.+|++.. .+..|.+.|.++.|.|.... +|++|+.|++|.+.|.+........-...+.|..++|.+... ..+
T Consensus 271 WD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se-~~f 345 (463)
T KOG0270|consen 271 WDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE-NSF 345 (463)
T ss_pred EEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc-eeE
Confidence 9999998776 67789999999999998776 899999999999999985333322222557788899876643 578
Q ss_pred EEEecCCeEEEEECCCC-CceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccE
Q 001386 503 FSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV 581 (1088)
Q Consensus 503 ~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v 581 (1088)
+++..||+|+-+|++.. ++..++..|..+|.++++++....+++.+ ..+..+.+|++..-... ....|...-+..
T Consensus 346 ~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~---s~d~~Vklw~~~~~~~~-~v~~~~~~~~rl 421 (463)
T KOG0270|consen 346 FVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTA---STDKVVKLWKFDVDSPK-SVKEHSFKLGRL 421 (463)
T ss_pred EEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeec---cccceEEEEeecCCCCc-ccccccccccce
Confidence 88899999999999987 67889999999999999999776655543 23677999998643321 111122112446
Q ss_pred EEEEEeCCCCEEE-EEeCCCcEEEEEcCCCeee
Q 001386 582 SVVHFDTAKDQIL-AAGDDHVIKIWDMNKVQLL 613 (1088)
Q Consensus 582 ~~~~~~~~~~~l~-~~s~dg~i~iwd~~~~~~~ 613 (1088)
.|.++.|+-.+++ .|+..+.++|||+.+...+
T Consensus 422 ~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 422 HCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred eecccCCCcceEEEecCccceEEEeecccChhH
Confidence 7777888766554 5777788999999876544
No 176
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.78 E-value=2.6e-17 Score=159.84 Aligned_cols=337 Identities=12% Similarity=0.157 Sum_probs=224.0
Q ss_pred EEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEE-EeCCCcEEEEEcCCCeee
Q 001386 535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLL 613 (1088)
Q Consensus 535 ~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~ 613 (1088)
.+|||+|+++|++.. ..+.|-|..+-+..+.+... +.|.-+.|..|.-++++ ...++.|.+|++...+..
T Consensus 14 c~fSp~g~yiAs~~~-----yrlviRd~~tlq~~qlf~cl----dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ 84 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSR-----YRLVIRDSETLQLHQLFLCL----DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY 84 (447)
T ss_pred eeECCCCCeeeeeee-----eEEEEeccchhhHHHHHHHH----HHhhheeeeccceeeeeeeeccceEEEEEeecceeE
Confidence 589999999999873 35888888877766655543 36788889999888777 567889999999988877
Q ss_pred EEEeCCCCCCCCceEEEecCCCEEEEE-eCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecC
Q 001386 614 TTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 692 (1088)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~ 692 (1088)
..++.. ...+..++|||||+.+... .-+-.|.+|.+.+.+.....
T Consensus 85 ckIdeg--~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~-------------------------------- 130 (447)
T KOG4497|consen 85 CKIDEG--QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP-------------------------------- 130 (447)
T ss_pred EEeccC--CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec--------------------------------
Confidence 777643 4468999999999766554 45888999988865332110
Q ss_pred CCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCC
Q 001386 693 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 772 (1088)
Q Consensus 693 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~ 772 (1088)
. ....+..++|.+||++.+..+.-.....+++.
T Consensus 131 -----------------------------------~----pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~-------- 163 (447)
T KOG4497|consen 131 -----------------------------------H----PKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS-------- 163 (447)
T ss_pred -----------------------------------c----cccCceeEEECCCCceeeeeecccHHHHHHHH--------
Confidence 0 11234667888888876655542111110000
Q ss_pred CCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe---CCcEEEEEcCCceeEEEecCCCCCeEEEEEcC
Q 001386 773 EVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNP 849 (1088)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp 849 (1088)
..+-|.+-....+ ..-..+.+.++|||..+|+-. +-.|..|.. .-.+..++|+|
T Consensus 164 --~c~~W~ll~~f~~---------dT~DltgieWsPdg~~laVwd~~Leykv~aYe~------------~lG~k~v~wsP 220 (447)
T KOG4497|consen 164 --SCKAWILLKEFKL---------DTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER------------GLGLKFVEWSP 220 (447)
T ss_pred --hhHHHHHHHhcCC---------CcccccCceECCCCcEEEEecchhhheeeeeee------------ccceeEEEecc
Confidence 0111211111101 233455688888888887754 233333332 23567788888
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCcee-------------------------------------------------------
Q 001386 850 HDNNVIAIGMDDSTILIYNARSSEV------------------------------------------------------- 874 (1088)
Q Consensus 850 ~d~~~lasg~~dg~i~lwd~~~~~~------------------------------------------------------- 874 (1088)
.+++|++|+.|+.++|.+--+.+.
T Consensus 221 -~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~ 299 (447)
T KOG4497|consen 221 -CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQ 299 (447)
T ss_pred -ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhh
Confidence 788888888888887754322211
Q ss_pred -----eeeec------cccCCeeEEEECCCCCEEEEEeC--CCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEc
Q 001386 875 -----ISKLE------GHSKRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH 941 (1088)
Q Consensus 875 -----~~~l~------~h~~~V~~l~~s~dg~~las~s~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs 941 (1088)
+..++ ...-.+.-++||+|..+++|-.+ -..+.+||+..-+ ....+.... +|....|.
T Consensus 300 ~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~-----l~avLiQk~----piraf~Wd 370 (447)
T KOG4497|consen 300 MTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK-----LHAVLIQKH----PIRAFEWD 370 (447)
T ss_pred hcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh-----hhhhhhhcc----ceeEEEeC
Confidence 11111 11224667899999999998653 2569999998733 223332222 58999999
Q ss_pred CCCCEEEEE-eCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCC
Q 001386 942 KDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 996 (1088)
Q Consensus 942 ~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg 996 (1088)
|....|++. ....+++|......++..... +-.|..++|.-+|..++..+.|.
T Consensus 371 P~~prL~vctg~srLY~W~psg~~~V~vP~~--GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 371 PGRPRLVVCTGKSRLYFWAPSGPRVVGVPKK--GFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred CCCceEEEEcCCceEEEEcCCCceEEecCCC--CceeeeEEecCCCcEEEEEcCCc
Confidence 999888884 556799999887666665444 58899999999999999888875
No 177
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=1.9e-17 Score=164.99 Aligned_cols=236 Identities=14% Similarity=0.177 Sum_probs=178.5
Q ss_pred cccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-CC
Q 001386 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DG 408 (1088)
Q Consensus 330 l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~-dg 408 (1088)
..||+++|..++|.|-....+|+||.|.+|.||++..+...... .-+...|.||...|.-++|+| ..
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l------------tepvv~L~gH~rrVg~V~wHPtA~ 144 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL------------TEPVVELYGHQRRVGLVQWHPTAP 144 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc------------ccceEEEeecceeEEEEeecccch
Confidence 46999999999999987779999999999999999877655431 122334899999999999999 56
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccE
Q 001386 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1088)
Q Consensus 409 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v 488 (1088)
+.|++++.|.+|.+||+.+|+.+- ++. |...|.++.|+.||. ++++.+.|+.|+|||.++|+.+..-.+|.+.-
T Consensus 145 NVLlsag~Dn~v~iWnv~tgeali---~l~-hpd~i~S~sfn~dGs--~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k 218 (472)
T KOG0303|consen 145 NVLLSAGSDNTVSIWNVGTGEALI---TLD-HPDMVYSMSFNRDGS--LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAK 218 (472)
T ss_pred hhHhhccCCceEEEEeccCCceee---ecC-CCCeEEEEEeccCCc--eeeeecccceeEEEcCCCCcEeeecccccCCC
Confidence 788999999999999999998665 455 999999999999999 89999999999999999999998888887543
Q ss_pred E-EEeeeeeCCceEEEEEe---cCCeEEEEECCCCCceEEe--cCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001386 489 Y-SLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 489 ~-~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 562 (1088)
. .+.| -.+|.++.+|. .++.+-+||..+.+....+ ......|.---+.+|...++.++ .|++.|+.|.+
T Consensus 219 ~~Raif--l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~G---KGD~~IRYyEi 293 (472)
T KOG0303|consen 219 PARAIF--LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCG---KGDSSIRYFEI 293 (472)
T ss_pred cceeEE--eccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEe---cCCcceEEEEe
Confidence 2 2223 34566444442 4678999998776553322 22344666667889999999887 56888999998
Q ss_pred CCCce-eEEEeccccccccEEEEEEeCC
Q 001386 563 SEGAI-KRTYQGLQLQHNSVSVVHFDTA 589 (1088)
Q Consensus 563 ~~~~~-~~~~~~~~~~~~~v~~~~~~~~ 589 (1088)
..... ++-+.... ...+-..+.|.|.
T Consensus 294 t~d~P~~hyln~f~-S~epQRG~g~mPK 320 (472)
T KOG0303|consen 294 TNEPPFVHYLNTFS-SKEPQRGMGFMPK 320 (472)
T ss_pred cCCCceeEEecccc-cCCcccccccccc
Confidence 76553 22222211 1234455666664
No 178
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=5.1e-16 Score=144.63 Aligned_cols=290 Identities=12% Similarity=0.126 Sum_probs=199.6
Q ss_pred cEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEE
Q 001386 736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 815 (1088)
Q Consensus 736 ~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 815 (1088)
.|.+-+++|.+++++++..+|.|.+..+..-..... -..|+..+ .+.++|+.++..++|. ..+|++
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~i---v~eqahdgpiy~~~f~--d~~Lls 77 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKI---VPEQAHDGPIYYLAFH--DDFLLS 77 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc---------CCCCCcce---eeccccCCCeeeeeee--hhheee
Confidence 344567899999999999999999998764322110 11122111 2224699999999997 457888
Q ss_pred EeCCcEEEEEcCCcee------EEEec-------CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccc
Q 001386 816 ASGGVISLYIVMTFKT------ILTIM-------PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS 882 (1088)
Q Consensus 816 ~~dg~i~iwd~~~~~~------~~~~~-------~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~ 882 (1088)
+.||.|+-|..+.... ..... ..-..|.++-..|..+.++. ++.|+.++-||+++|+...+++||+
T Consensus 78 ~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 78 GGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-AGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred ccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-ecCCeEEEEEEecCCEEEEEEcCCc
Confidence 8899999987654222 11111 12357899999995555554 5589999999999999999999999
Q ss_pred CCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCc
Q 001386 883 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 962 (1088)
Q Consensus 883 ~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~ 962 (1088)
+-|.+++--.....+.||++||++|+||.++++.....-....+......-.-+-.+..-+..+|++|....+.+|.+..
T Consensus 157 DYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrs 236 (325)
T KOG0649|consen 157 DYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRS 236 (325)
T ss_pred ceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccC
Confidence 99999998555567889999999999999997644322111111111000012235666778899999999999999999
Q ss_pred ceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEE
Q 001386 963 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1042 (1088)
Q Consensus 963 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l 1042 (1088)
.++...+.. .+++..+.|-.| .+++++..+.|.-|.+. |.+...+.... ...+..+...+| =+++
T Consensus 237 se~t~vfpi--pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s--------~~c~s~s~~~~p--~k~~ 301 (325)
T KOG0649|consen 237 SESTCVFPI--PARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVES--------TACYSASWQTSP--IKFI 301 (325)
T ss_pred CCceEEEec--ccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCCc--------cceeeecccCCc--eEEE
Confidence 988877543 577888888654 77788888899999875 66555544111 112333344556 2566
Q ss_pred EEEeCCCcEEEEe
Q 001386 1043 AVGLTNGEVYVIE 1055 (1088)
Q Consensus 1043 ~~~~~dg~v~~w~ 1055 (1088)
-.++..+.+.++.
T Consensus 302 s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 302 SIAGFSNKLHILK 314 (325)
T ss_pred Eecccceeeeeee
Confidence 6777777777753
No 179
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=9.9e-16 Score=158.43 Aligned_cols=497 Identities=12% Similarity=0.170 Sum_probs=287.0
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE--CCCCC
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW--SPDGS 409 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~--s~dg~ 409 (1088)
-|+..|.|+.|+.+.. ++.++++ ..+.+|.-.+........+. ..|-.. ..| +....- -....
T Consensus 12 r~~e~vc~v~w~~~ee-i~~~~dD-h~~~~~~~~~~~s~~~~~~p--------~df~pt--~~h---~~~rs~~~g~~~d 76 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE-IYFVSDD-HQIFKWSDVSRDSVEVAKLP--------DDFVPT--DMH---LGGRSSGGGKGSD 76 (737)
T ss_pred ccceeEEeecccccce-EEEeccC-ceEEEeecccchhhhhhhCC--------cccCCc--ccc---ccccccCCCCCcc
Confidence 5666788999999887 5555544 55555544333222111100 000000 001 000000 01235
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEE
Q 001386 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~ 489 (1088)
.++.++.||.+.+-+-.. +.-+ ....|.+.|.+-.|+|||. -|++++.||.|++|. ++|....++.....+|.
T Consensus 77 ~~~i~s~DGkf~il~k~~-rVE~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~ 149 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSA-RVER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIR 149 (737)
T ss_pred eEEEEcCCceEEEecccc-hhhh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeE
Confidence 678888999888876543 2222 5779999999999999999 899999999999998 88877777777888999
Q ss_pred EEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeE
Q 001386 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1088)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1088)
|++|.|+.+ ..+++.+ +.+.+=-+...........|.+-|.++.|++....+++++. +....+||.. |..+.
T Consensus 150 c~~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~Lf 221 (737)
T KOG1524|consen 150 CARWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANLF 221 (737)
T ss_pred EEEECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-Ccccc
Confidence 999977654 3444433 55666666767777888999999999999999999999986 6669999965 55555
Q ss_pred EEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEE
Q 001386 570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 649 (1088)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 649 (1088)
.-..|. .+|++++|+|+ ..++.++. .++| +.. .....|..++||+||..+++|+..|.+.+-
T Consensus 222 ~S~~~e---y~ITSva~npd-~~~~v~S~-nt~R------------~~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 222 TSAAEE---YAITSVAFNPE-KDYLLWSY-NTAR------------FSS-PRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred cCChhc---cceeeeeeccc-cceeeeee-eeee------------ecC-CCccceEEEEEcCCCceeeccccCceEEEe
Confidence 555555 89999999999 55555553 2333 211 223468999999999999999999988764
Q ss_pred eCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecC
Q 001386 650 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 729 (1088)
Q Consensus 650 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~ 729 (1088)
-.-..+... +..-++......|.+-++.. ..+..+.+
T Consensus 284 ~~ieq~l~~---------------------------------------~n~~~t~~~r~~I~vrdV~~---~v~d~LE~- 320 (737)
T KOG1524|consen 284 YAIEQQLVS---------------------------------------GNLKATSKSRKSITVRDVAT---GVQDILEF- 320 (737)
T ss_pred eeehhhhhh---------------------------------------ccceeEeeccceEEeehhhh---hHHHHhhC-
Confidence 332221110 11111111112222222211 11111221
Q ss_pred CccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecC
Q 001386 730 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 809 (1088)
Q Consensus 730 ~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 809 (1088)
..++...+.+. .+|+++.+ ..+++|.-..-. ++.+.|.+.+. +.-+.- .
T Consensus 321 ----p~rv~k~sL~Y--~hLvvaTs-~qvyiys~knwn-------tpiiidgre~t---------------r~lieq--~ 369 (737)
T KOG1524|consen 321 ----PQRVVKFSLGY--GHLVVATS-LQVYIYSEKNWN-------TPIIIDGREDT---------------RNLIEQ--G 369 (737)
T ss_pred ----ccceeeeeece--eEEEEEec-cEEEEEecCCcc-------CcEEEeccccc---------------hhHhhh--h
Confidence 22344433322 23333332 245554311100 11111111111 000000 1
Q ss_pred CCEEEEEeCCcEEEEEcCCceeEEEecCCCCCe-----EEEEEcCCCCcEEEEE--eCCCeEEEEEc-CCceeee--eec
Q 001386 810 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTA-----TSLAFNPHDNNVIAIG--MDDSTILIYNA-RSSEVIS--KLE 879 (1088)
Q Consensus 810 g~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i-----~~l~~sp~d~~~lasg--~~dg~i~lwd~-~~~~~~~--~l~ 879 (1088)
.+++......+|.+|..+ |+.......+...+ ..+... ...|+.- .....+.+||. .+|+... .+-
T Consensus 370 ek~fli~dgsSi~lytye-gR~~~np~~Pg~~~dlL~~rtlsLa---ndtLaird~ad~kvlhlFd~istgk~qgDgk~L 445 (737)
T KOG1524|consen 370 EKYFLILDGSSIWLYTYE-GRLHLNPRYPGSQIDLLTWRTLSLA---NDTLAIRDNADPKVLHLFDLISTGKRQGDGKSL 445 (737)
T ss_pred hhheEEecCcEEEEEEec-CceecCCCCCCcccccccceeeecc---cceEEeecCCCCeeEEeccCCCCCcccCCcccc
Confidence 123333334457777665 33332222222211 233333 2244432 23347788998 6776552 222
Q ss_pred cccCCeeEEEEC----CCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeE
Q 001386 880 GHSKRVTGLVFS----DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHL 955 (1088)
Q Consensus 880 ~h~~~V~~l~~s----~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i 955 (1088)
.|...|..++.. ++.+.++.-...+.+.|=.+++-... .+.++ .+..|..++|+...+.|.--.|+.+
T Consensus 446 ~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgke-e~I~K-------iGTmVhtLawndttNiLcglqDt~f 517 (737)
T KOG1524|consen 446 RHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKE-EEIYK-------IGTMVHTLAWNDTTNILCGLQDTCF 517 (737)
T ss_pred chhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCch-hhhhh-------hhhhhhhhhhccccceeeeeccceE
Confidence 366777777764 45688888888888888777652211 11111 1235788999988888877899999
Q ss_pred EEEEcCc
Q 001386 956 AIYEAEE 962 (1088)
Q Consensus 956 ~vwd~~~ 962 (1088)
.||=...
T Consensus 518 sVWy~pn 524 (737)
T KOG1524|consen 518 SVWYYPN 524 (737)
T ss_pred EEEEcCC
Confidence 9997653
No 180
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=3.7e-18 Score=193.45 Aligned_cols=251 Identities=14% Similarity=0.154 Sum_probs=197.1
Q ss_pred CceeeeecCCCCe---EEEEEcccCcEEEEecCCC---cceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCC
Q 001386 336 SPMSMDFHPVQHT---LLLVGTNVGDTGLWDVNSG---QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1088)
Q Consensus 336 ~V~~v~~spdg~~---lla~g~~dg~i~iwd~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~ 409 (1088)
.-..++|.+.|.. ++|.|..||.|.+||...- .... .......|.+.|..+.|++.+.
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~----------------~la~~~~h~G~V~gLDfN~~q~ 129 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEE----------------VLATKSKHTGPVLGLDFNPFQG 129 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchH----------------HHhhhcccCCceeeeeccccCC
Confidence 6678899888775 6999999999999998762 1110 0011566999999999999655
Q ss_pred -EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCc--
Q 001386 410 -LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA-- 486 (1088)
Q Consensus 410 -~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~-- 486 (1088)
+||+|+.||.|.|||+..-+.-.... -....+.|.+++|+..-.+ +|++++.+|.+.|||++..+.+-.+..+.+
T Consensus 130 nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~ 207 (1049)
T KOG0307|consen 130 NLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM 207 (1049)
T ss_pred ceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccccCCCcc
Confidence 99999999999999998754322110 1124568999999988776 799999999999999999988877766654
Q ss_pred cEEEEeeeeeCCceEEEEEecCC--eEEEEECCCCCc-eEEecCCCCceEEEEEccCC-CEEEEEeeCCCCceeEEEEeC
Q 001386 487 PVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~~~~~i~iwd~ 562 (1088)
.+..+.|+|+...+++++...|+ .|.+||++.... ..++..|...|.++.|++.+ ++|++++. ++.|.+|+.
T Consensus 208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk----D~~ii~wN~ 283 (1049)
T KOG0307|consen 208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK----DNRIICWNP 283 (1049)
T ss_pred ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC----CCCeeEecC
Confidence 47788999886654444444443 499999987654 55677999999999999977 77778765 556999999
Q ss_pred CCCceeEEEeccccccccEEEEEEeCCCC-EEEEEeCCCcEEEEEcCCCe
Q 001386 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ 611 (1088)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~ 611 (1088)
++++.+..+.... +.+..+.|.|... .+++++-||.|.|+.+.+..
T Consensus 284 ~tgEvl~~~p~~~---nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 284 NTGEVLGELPAQG---NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCceEeeecCCCC---cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999988755 8899999999877 67778999999999987654
No 181
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=7.1e-17 Score=160.02 Aligned_cols=303 Identities=12% Similarity=0.103 Sum_probs=214.8
Q ss_pred heeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEEC
Q 001386 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1088)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1088)
+..-+.+|.+.|.++.||.+|+ +||+|+.|..+++|++..--..++. ++++ ..-..|...|.|++|.
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~-----------KPI~-~~~~~H~SNIF~L~F~ 114 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTP-----------KPIG-VMEHPHRSNIFSLEFD 114 (609)
T ss_pred hhhhhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCC-----------CCce-eccCccccceEEEEEc
Confidence 4456789999999999999998 7999999999999999753222210 0111 0133477999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc-e--eEEec
Q 001386 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-R--TYSFE 482 (1088)
Q Consensus 406 ~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~-~--~~~~~ 482 (1088)
...++|.+|..+++|.+-|+++.+.+... .-....+.|..+..+|-.+ .+++.+.++.|.+||.+... . +..+.
T Consensus 115 ~~N~~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A 191 (609)
T KOG4227|consen 115 LENRFLYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPA 191 (609)
T ss_pred cCCeeEecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeec
Confidence 99999999999999999999998755421 1112334899999999977 79999999999999987654 2 22333
Q ss_pred cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEE-------ecCCCCceEEEEEccCCCEEEEEeeCCCCce
Q 001386 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-------YDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1088)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 555 (1088)
.......++-|+|.. -.+|++.+..+-+.+||.+....... +......-.++.|+|+|..+.+.-. ..
T Consensus 192 N~~~~F~t~~F~P~~-P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~~ 266 (609)
T KOG4227|consen 192 NSGKNFYTAEFHPET-PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----GK 266 (609)
T ss_pred CCCccceeeeecCCC-ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----cC
Confidence 344566777787653 36889999999999999987654321 1111223467889999999887643 22
Q ss_pred eEEEEeCCCCceeEEEecccc----ccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC---------------------
Q 001386 556 FLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--------------------- 610 (1088)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--------------------- 610 (1088)
.-.+||.-+.++...-..|.. ....+.+++|..|- .+++|+.+-.|++|.+...
T Consensus 267 ~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~ 345 (609)
T KOG4227|consen 267 CPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIF 345 (609)
T ss_pred CCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhhe
Confidence 244567665433222122221 11356778887664 4999999999999987531
Q ss_pred --eeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCC
Q 001386 611 --QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 611 --~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
+.+..+.+|. ..++.+.|+|...+|++.+-.+.+++|.-.
T Consensus 346 i~~~~~VLrGHR--Sv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 346 IEKELTVLRGHR--SVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ecceeEEEeccc--ccccceeecCCcceEeccchhhheeccccc
Confidence 1233455443 357899999999999999999999999754
No 182
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=5.3e-18 Score=173.54 Aligned_cols=302 Identities=16% Similarity=0.218 Sum_probs=234.8
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
.+...|.+|.+.|..|.|...|. +|++|+.|..|.+||+.++.....+ ..||...|....|
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f------------------~SGH~~NvfQaKF 193 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLSF------------------ESGHCNNVFQAKF 193 (559)
T ss_pred hhhhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCccccc------------------ccccccchhhhhc
Confidence 45567889999999999999998 7999999999999999999876431 5689999999999
Q ss_pred CC--CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe-
Q 001386 405 SP--DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF- 481 (1088)
Q Consensus 405 s~--dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~- 481 (1088)
-| +.+-+++++.||.+++=.+.....+.....+..|.++|.-++.-|+..+ .+.+++.|+.+.-.|+.++.....+
T Consensus 194 iP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~ 272 (559)
T KOG1334|consen 194 IPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFV 272 (559)
T ss_pred cCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceee
Confidence 98 5678999999999999877655444444467889999999999999887 7899999999999999887654333
Q ss_pred --ccCCc---cEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCce------EEec------CCCCceEEEEEccCCCEE
Q 001386 482 --EGHGA---PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR------VDYD------APGLGCTRMAYSANGRRL 544 (1088)
Q Consensus 482 --~~~~~---~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------~~~~------~~~~~v~~~~~s~~g~~l 544 (1088)
..+.. ...+++..|. +...+++++.|..+++||.+..... ..+. ...-.|++++|+.++.-|
T Consensus 273 cr~~~~~~~v~L~~Ia~~P~-nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sEl 351 (559)
T KOG1334|consen 273 CREADEKERVGLYTIAVDPR-NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSEL 351 (559)
T ss_pred eeccCCccceeeeeEecCCC-CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccce
Confidence 22233 4567777665 3458999999999999998754322 1111 223368999999766655
Q ss_pred EEEeeCCCCceeEEEEeCCC--C----------ceeEE-EeccccccccEEEEE-EeCCCCEEEEEeCCCcEEEEEcCCC
Q 001386 545 FSCGTSKEGESFLVEWNESE--G----------AIKRT-YQGLQLQHNSVSVVH-FDTAKDQILAAGDDHVIKIWDMNKV 610 (1088)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~--~----------~~~~~-~~~~~~~~~~v~~~~-~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1088)
++... +..|+++.... | ..++. ++||... ..|..+- |.|...++++|+.-|.|.||+-.++
T Consensus 352 LaSYn----De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~-~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ 426 (559)
T KOG1334|consen 352 LASYN----DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS-RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG 426 (559)
T ss_pred eeeec----ccceEEeccccccCCCCCCCcchhhccchhhcccccc-cccceeeeccCccceEEecCccceEEEEecchh
Confidence 55543 34488885432 2 22333 7888732 3466665 5788999999999999999999999
Q ss_pred eeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 001386 611 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 611 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
+.+..+.+..+ .|+|+.-+|--..||+.+-|..|+||.-.+.
T Consensus 427 eii~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 427 EIIRFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred HHHHHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 99998887766 5899999999999999999999999987543
No 183
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=3.8e-17 Score=169.20 Aligned_cols=246 Identities=13% Similarity=0.175 Sum_probs=172.1
Q ss_pred heeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEEC
Q 001386 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1088)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1088)
+.+.|.||++.|.|++|+.||. +|++||.|-.+.|||.-..+.+.. +-+||.+.|.++.|-
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFv 102 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFV 102 (758)
T ss_pred hhhhhccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeee
Confidence 4467899999999999999999 899999999999999987776653 257899999999999
Q ss_pred C--CCCEEEEEeCCCEEEEEEccCCC-------cccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc
Q 001386 406 P--DGSLLGVAYSKHIVQLYAYHGGS-------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1088)
Q Consensus 406 ~--dg~~las~~~dg~i~vwd~~~~~-------~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~ 476 (1088)
| +.+.+++|..|..|+++|+...+ ...+...+..|...|..++-.|++.+ .+.+++.||+|+-+|++...
T Consensus 103 P~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 103 PYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred ccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCc
Confidence 9 67889999999999999998522 12333456789999999999999966 89999999999999997532
Q ss_pred -eeE---------EeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceE----E-ecCCCCceEEEE-EccC
Q 001386 477 -RTY---------SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV----D-YDAPGLGCTRMA-YSAN 540 (1088)
Q Consensus 477 -~~~---------~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~-~~~~~~~v~~~~-~s~~ 540 (1088)
|-. .+...--...++.++|. +..+|+.|+.|-..++||.+...... . ...+...+.|+. |+|.
T Consensus 182 ~c~p~~~~~~~l~ny~~~lielk~ltisp~-rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~ 260 (758)
T KOG1310|consen 182 VCNPDEDCPSILVNYNPQLIELKCLTISPS-RPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPG 260 (758)
T ss_pred cCCccccccHHHHHhchhhheeeeeeecCC-CCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCc
Confidence 111 11111133566777766 34799999999999999953211110 0 001111122222 2222
Q ss_pred CCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEe
Q 001386 541 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1088)
Q Consensus 541 g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1088)
+- . ...|...... ..++-+.|+|+|.-++..-....|+++|+..++....+.
T Consensus 261 hl----k--------------n~~gn~~~~~-------~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 261 HL----K--------------NSQGNLDRYI-------TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred cc----c--------------Ccccccccce-------eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 21 0 0001110000 235677899999888887667789999998877665543
No 184
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.76 E-value=2.1e-17 Score=155.85 Aligned_cols=308 Identities=16% Similarity=0.176 Sum_probs=199.0
Q ss_pred eEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEE
Q 001386 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1088)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1088)
...+++|. ..++++.|..++ ++++|..-|.|.+|++.+.+....+..++. ..|..+.--|+ ..+.+-+.|+.+.
T Consensus 7 ~fvLRp~~---~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~-~~it~lq~~p~-d~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 7 FFVLRPHS---SSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGR-LFITNLQSIPN-DSLDTQGRDPLLI 80 (323)
T ss_pred eeEecccc---chheehhhccch-hhhcccccceEEEEEeecCccchhhhhhcc-ceeeceeecCC-cchhhcCCCceEE
Confidence 34455666 889999998765 599999999999999999988888875543 25777777776 4678888999999
Q ss_pred EEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeee
Q 001386 648 ILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL 727 (1088)
Q Consensus 648 iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~ 727 (1088)
+|++..+..+... .-.++++.|.+....... .+....++.-+..... +-..+.+...+.....
T Consensus 81 lw~ia~s~~i~i~---Si~~nslgFCrfSl~~~~-------------k~~eqll~yp~rgsde-~h~~D~g~~tqv~i~d 143 (323)
T KOG0322|consen 81 LWTIAYSAFISIH---SIVVNSLGFCRFSLVKKP-------------KNSEQLLEYPSRGSDE-THKQDGGDTTQVQIAD 143 (323)
T ss_pred EEEccCcceEEEe---eeeccccccccceeccCC-------------CcchhheecCCcccch-hhhhccCccceeEccC
Confidence 9999875433322 222233333322111100 0000111111110000 0001111122222222
Q ss_pred cCCccccccEEEEEEe-cCCc--eEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEE
Q 001386 728 LPSKVKANKISRLTYN-NGGQ--AIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 804 (1088)
Q Consensus 728 ~~~~~~~~~i~~~~~s-~~g~--~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 804 (1088)
-+.....+.+.+..+. .++. .+++|..+|.+.+||+..+..... -+..|.+.. +...|..+|.++
T Consensus 144 d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~---~~~~~kv~~---------~~ash~qpvlsl 211 (323)
T KOG0322|consen 144 DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQ---LPQSSKVES---------PNASHKQPVLSL 211 (323)
T ss_pred chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeec---ccccccccc---------chhhccCcceee
Confidence 2223344555555432 2222 356777899999999987643111 112222221 122488999999
Q ss_pred EEecCCCEEEEEe-CCcEEEEEcCCc--ee--EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeec
Q 001386 805 ALSKNDAYLFSAS-GGVISLYIVMTF--KT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 879 (1088)
Q Consensus 805 ~~s~dg~~l~~~~-dg~i~iwd~~~~--~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~ 879 (1088)
.+.+.-..=++++ +..+..|+++.. .+ ...+......+..+.+-| |++++|+++.||.|+||+.++...+..++
T Consensus 212 dyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLk 290 (323)
T KOG0322|consen 212 DYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLK 290 (323)
T ss_pred eechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhh
Confidence 9987555555555 667888887632 22 223333456788899999 89999999999999999999999999999
Q ss_pred cccCCeeEEEECCCCCEEEEEeCCCcEEEEEc
Q 001386 880 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 911 (1088)
Q Consensus 880 ~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~ 911 (1088)
-|++.|++++|+||...+|.+|.|++|.+|++
T Consensus 291 yHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 291 YHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999999999999986
No 185
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.75 E-value=1.8e-17 Score=156.34 Aligned_cols=294 Identities=17% Similarity=0.195 Sum_probs=198.8
Q ss_pred chhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeec-CCCCCeEE
Q 001386 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR-DPGVSVNR 401 (1088)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~h~~~V~~ 401 (1088)
|..-...|++|.+.|+++.|-.+++ |.+|...|.|++|++.+...+.. +. .|...|+.
T Consensus 3 pPdP~fvLRp~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~ 61 (323)
T KOG0322|consen 3 PPDPFFVLRPHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITN 61 (323)
T ss_pred CCCCeeEeccccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeec
Confidence 3344567789999999999999986 78899999999999999876543 33 37788999
Q ss_pred EEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCC-----CCcE--EEEEEeCCC-cEEEEeCC
Q 001386 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-----CKQI--SVITCGDDK-TIKVWDAV 473 (1088)
Q Consensus 402 l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d-----~~~l--~l~s~s~d~-~i~vwd~~ 473 (1088)
+.--|+ +.|.+-+.|+.+.+|++..+..+ ..|+-.++++.|.+- ++.. .++.-+... .+.+-|..
T Consensus 62 lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i------~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g 134 (323)
T KOG0322|consen 62 LQSIPN-DSLDTQGRDPLLILWTIAYSAFI------SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGG 134 (323)
T ss_pred eeecCC-cchhhcCCCceEEEEEccCcceE------EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccC
Confidence 998887 56777789999999999876533 245555666666542 2110 111111000 01111211
Q ss_pred CCceeEEe----ccCCccEEEEeeeeeC-CceEEEEEecCCeEEEEECCCCCceE----------EecCCCCceEEEEEc
Q 001386 474 TGSRTYSF----EGHGAPVYSLCPHAKE-NIHFIFSISVDGKIKAWLYDSLGARV----------DYDAPGLGCTRMAYS 538 (1088)
Q Consensus 474 ~~~~~~~~----~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~----------~~~~~~~~v~~~~~s 538 (1088)
....+... .+..+.+.+..+.... ..-++++|..+|.|.+||+.++.... ....|..++.++.+.
T Consensus 135 ~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldya 214 (323)
T KOG0322|consen 135 DTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYA 214 (323)
T ss_pred ccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeec
Confidence 11111111 1123445555432221 22367788889999999999874333 334566788899888
Q ss_pred cCCCEEEEEeeCCCCceeEEEEeCC--CCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEE
Q 001386 539 ANGRRLFSCGTSKEGESFLVEWNES--EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616 (1088)
Q Consensus 539 ~~g~~l~~~~~~~~~~~~i~iwd~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 616 (1088)
+.-..=++++. ...+..|++. ++.+.... .+...+..+..+..-||++.+++++.|+.||||+.++.+++..+
T Consensus 215 s~~~rGisgga----~dkl~~~Sl~~s~gslq~~~-e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL 289 (323)
T KOG0322|consen 215 SSCDRGISGGA----DDKLVMYSLNHSTGSLQIRK-EITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL 289 (323)
T ss_pred hhhcCCcCCCc----cccceeeeeccccCcccccc-eEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh
Confidence 75555555544 3336666654 23321111 11111356888899999999999999999999999999999999
Q ss_pred eCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeC
Q 001386 617 DAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1088)
Q Consensus 617 ~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1088)
..|.. .|++++|+|+..++|.++.|+.|.+|++
T Consensus 290 kyHsa--gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 290 KYHSA--GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhc--ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 98864 6999999999999999999999999986
No 186
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.2e-17 Score=174.50 Aligned_cols=261 Identities=15% Similarity=0.203 Sum_probs=195.5
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEcc-----CCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCC
Q 001386 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-----GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~-----~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~ 465 (1088)
.+..|...|+.++|.|-...|++++.||++.+|++. ....+.++.++++|.++|.|++++++++ .+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 477799999999999999999999999999999992 3344677889999999999999999999 899999999
Q ss_pred cEEEEeCCC------C----ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCC--ceE
Q 001386 466 TIKVWDAVT------G----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCT 533 (1088)
Q Consensus 466 ~i~vwd~~~------~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~ 533 (1088)
+|+.|++.. . .....+.||.+.|+.++++..++ .|++++.||+++.|+...... ..+..... --.
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 999996541 1 22357889999999999977664 799999999999998765554 23322222 223
Q ss_pred EEEEccCC-CEEEEEeeCCCCceeEEEEeCCCCceeEEEeccc----cccccEEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 001386 534 RMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ----LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1088)
Q Consensus 534 ~~~~s~~g-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 608 (1088)
++.+.... ..+++... .+.-.+.+...+..+..+.... .....+..+.++|.+...+++.+|+.|+++|..
T Consensus 444 svd~~ss~~a~~~~s~~----~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFR----FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred eEeeccchhHhhhhhcc----cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 44443322 11222111 1112233444444444443221 112457788899999999999999999999999
Q ss_pred CCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCccccccc
Q 001386 609 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 662 (1088)
Q Consensus 609 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 662 (1088)
+++++.....+. ..+.++++.|+|.+|++++.|+.+++|.+....+......
T Consensus 520 ~~~~l~s~~a~~--~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~ 571 (577)
T KOG0642|consen 520 TGKILHSMVAHK--DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTA 571 (577)
T ss_pred ccccchheeecc--ceecceeecCCCceEEeecCCceeehhhccchheeecccc
Confidence 999998887663 4689999999999999999999999999987665554433
No 187
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.75 E-value=4.2e-15 Score=163.51 Aligned_cols=202 Identities=12% Similarity=0.129 Sum_probs=129.5
Q ss_pred eEEEEecCCCEEEEEe--CCcEEEEEcCC-c---eeEEEecCCCCCeEEEEEcCCCCcEEE-EEeCCCeEEEEEcCCcee
Q 001386 802 PCFALSKNDAYLFSAS--GGVISLYIVMT-F---KTILTIMPPSPTATSLAFNPHDNNVIA-IGMDDSTILIYNARSSEV 874 (1088)
Q Consensus 802 ~~~~~s~dg~~l~~~~--dg~i~iwd~~~-~---~~~~~~~~~~~~i~~l~~sp~d~~~la-sg~~dg~i~lwd~~~~~~ 874 (1088)
..++++|+++++++++ ++.|.+|++++ + +.+..+. +.....+++++| ++++++ +...++.|.+||+.+...
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCc
Confidence 3566777777666665 56677777753 2 1222222 223466788999 677664 555679999999986332
Q ss_pred ee-------eeccccCCeeEEEECCCCCEEEEEeC-CCcEEEEEcCC--CceeeeeeeecCCCCccCCCCeEEEEEcCCC
Q 001386 875 IS-------KLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 944 (1088)
Q Consensus 875 ~~-------~l~~h~~~V~~l~~s~dg~~las~s~-Dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg 944 (1088)
+. .... ......++|+|||++|+++.. +++|.+|+++. ++......+...............+.|+|||
T Consensus 161 l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 161 LVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred ccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 21 1111 234678999999999988876 89999999984 3322222222211111111123468999999
Q ss_pred CEEEEE--eCCeEEEEEcCcce----eeeeeecCCCcCEEEEEEeeCCCEEEEEeC-CCcEEEEEcC--CCce
Q 001386 945 TRFLLV--HETHLAIYEAEELT----CLKQWFPISSVPISQATFSCDCRMVFTSFV-DGTLSIHEAS--NLEV 1008 (1088)
Q Consensus 945 ~~l~~~--~d~~i~vwd~~~~~----~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~-dg~v~vwd~~--~~~~ 1008 (1088)
++++++ .++.|.+|++.... .+..... ......+.|+|||++|+++.. +++|.+|+++ +|.+
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPT--ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--cccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcE
Confidence 999996 45789999986433 2222222 234557899999999998775 8999999874 4543
No 188
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.3e-16 Score=156.44 Aligned_cols=296 Identities=11% Similarity=0.082 Sum_probs=209.7
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCC---CcccceeEe-ccCCCCEEEEEecCCCCcEEEEEEeCCCc
Q 001386 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG---SDARQQLEI-DAHVGNVNDLAFSAPCKQISVITCGDDKT 466 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~---~~~~~~~~~-~~h~~~v~~~~~s~d~~~l~l~s~s~d~~ 466 (1088)
-+.+|.+.|.++.||.++++||+|+.|..+++|+++.- +..+++... ..|...|.|++|...++ .+.+|+.+++
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~--~~~SG~~~~~ 128 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR--FLYSGERWGT 128 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe--eEecCCCcce
Confidence 37789999999999999999999999999999998632 111222111 24668999999998888 8999999999
Q ss_pred EEEEeCCCCceeEEecc--CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc---eEEecCCCCceEEEEEccCC
Q 001386 467 IKVWDAVTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANG 541 (1088)
Q Consensus 467 i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~g 541 (1088)
|...|+++.+.+..+.. ..+.|+.+..+|.. ..+++.+.+|.|.+||.+.... .+..........++.|+|..
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D--N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTD--NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCC--ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 99999999998887753 34589999988763 5899999999999999987652 33344445578889999988
Q ss_pred CEEEEEeeCCCCceeEEEEeCCCCce-eEE---EeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeee-EEE
Q 001386 542 RRLFSCGTSKEGESFLVEWNESEGAI-KRT---YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL-TTI 616 (1088)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~-~~~ 616 (1088)
..|+....... -+-+||.+.... +.. +.+.......-.++.|+|+|+.+++.-....-.+||+-+.++. ..+
T Consensus 207 P~Li~~~~~~~---G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~ 283 (609)
T KOG4227|consen 207 PALILVNSETG---GPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS 283 (609)
T ss_pred ceeEEeccccC---CCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence 77666554332 378899875432 111 1222211123466789999999998776666677887764432 222
Q ss_pred eCCC----CCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCC-----------------------cccccccccCccee
Q 001386 617 DAGG----GLPENPRICFNKNGTLLAVIANENRIKILETPESN-----------------------SVDAAGVLSDNLRK 669 (1088)
Q Consensus 617 ~~~~----~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~-----------------------~~~~~~~~~~~v~~ 669 (1088)
.... ....+.+++|-.|- .+++|+++-.|++|.+.... .+..+++|..-+..
T Consensus 284 D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ 362 (609)
T KOG4227|consen 284 DHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ 362 (609)
T ss_pred cCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc
Confidence 2111 12235677776554 59999999999999987431 23344555555555
Q ss_pred eeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceecccc
Q 001386 670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1088)
Q Consensus 670 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 716 (1088)
+.|+ +...++++.+-.+.+++|...
T Consensus 363 VRF~----------------------~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 363 VRFS----------------------QHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eeec----------------------CCcceEeccchhhheeccccc
Confidence 5555 567778888888999999843
No 189
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.4e-15 Score=141.81 Aligned_cols=283 Identities=17% Similarity=0.204 Sum_probs=193.9
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~ 415 (1088)
.|.+-++||.++ +|+.|..+|+|.+..+.+-..-.. ............+|.++|..++|. .++|++|+
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 577778999998 799999999999999864211100 000011111247899999999998 55677764
Q ss_pred CCCEEEEEEccCCCc---ccceeE--eccCC-----CCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCC
Q 001386 416 SKHIVQLYAYHGGSD---ARQQLE--IDAHV-----GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~---~~~~~~--~~~h~-----~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 485 (1088)
||.|+=|....... .+...+ ...|. -.|+++...|..+ -++.++.|+.++-||+++|+..++++||+
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 59999998764322 111111 11232 2588898988877 46666689999999999999999999999
Q ss_pred ccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCC--------ceEEEEEccCCCEEEEEeeCCCCceeE
Q 001386 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--------GCTRMAYSANGRRLFSCGTSKEGESFL 557 (1088)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------~v~~~~~s~~g~~l~~~~~~~~~~~~i 557 (1088)
..|.++.-.. ....+++|+.||++|+||.++.+....+....+ .-.-.+..-+..+|++|+. ..+
T Consensus 157 DYvH~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG-----p~l 229 (325)
T KOG0649|consen 157 DYVHSVVGRN--ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG-----PKL 229 (325)
T ss_pred ceeeeeeecc--cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC-----Cce
Confidence 9999987632 234799999999999999999988776544322 1112455567789998864 339
Q ss_pred EEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCC-CE
Q 001386 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG-TL 636 (1088)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~ 636 (1088)
.+|+++..++...+.-.. .+..+.|.. +.++++++.+.|.-|.+. |......+.... ...+..++... ++
T Consensus 230 slwhLrsse~t~vfpipa----~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~~p~k~ 300 (325)
T KOG0649|consen 230 SLWHLRSSESTCVFPIPA----RVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQTSPIKF 300 (325)
T ss_pred eEEeccCCCceEEEeccc----ceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccCCceEE
Confidence 999999999888877543 677777764 578888888889999874 444444443322 23444444332 34
Q ss_pred EEEEeCCCcEEEE
Q 001386 637 LAVIANENRIKIL 649 (1088)
Q Consensus 637 l~~~~~dg~i~iw 649 (1088)
+-.++....+.|+
T Consensus 301 ~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 301 ISIAGFSNKLHIL 313 (325)
T ss_pred EEecccceeeeee
Confidence 5555555666654
No 190
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=1e-14 Score=145.15 Aligned_cols=242 Identities=11% Similarity=0.142 Sum_probs=186.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC
Q 001386 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1088)
Q Consensus 396 ~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~ 475 (1088)
...+..+.|+.|...|..|+.|| -++|..+.-.... ........|.-+-|+. ..+.+++...-+.+++.+.+.+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccC
Confidence 34677788999999999999999 6888877543211 1112223455566664 3223444433345999999999
Q ss_pred ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCC---CCceEEEEEccCCCEEEEEeeCCC
Q 001386 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP---GLGCTRMAYSANGRRLFSCGTSKE 552 (1088)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~s~~g~~l~~~~~~~~ 552 (1088)
..+..+. ...+|.++.+. .+.|+..-.+. |.|||+++.+...++... ...+..+++++.+.+++.-+..
T Consensus 79 ~~ICe~~-fpt~IL~VrmN----r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~-- 150 (391)
T KOG2110|consen 79 TTICEIF-FPTSILAVRMN----RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST-- 150 (391)
T ss_pred ceEEEEe-cCCceEEEEEc----cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCC--
Confidence 8888776 56678888873 34566655544 999999998887766543 3356666667777799876542
Q ss_pred CceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCc-EEEEEcCCCeeeEEEeCCCCCCCCceEEEe
Q 001386 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1088)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1088)
..+.|++||..+-+.+..+..|. +.+.+++|+++|..++++++.|+ |||+.+.+|+.+..++.......|.+++|+
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~---~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHK---GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred CCceEEEEEcccceeeeEEEecC---CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence 25569999999999999999888 99999999999999999999997 699999999999999876656678999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCC
Q 001386 632 KNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 632 ~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
|++++|++.++.++|.++.+...
T Consensus 228 ~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 228 PDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCCCeEEEecCCCeEEEEEeccc
Confidence 99999999999999999998854
No 191
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=3.6e-17 Score=171.00 Aligned_cols=269 Identities=14% Similarity=0.190 Sum_probs=192.0
Q ss_pred eecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
.+|..|.+.|++++|+|-.. .|++++.||++.+|+++....-.. ...-+-..+.+|.++|-|++.+++
T Consensus 288 ~tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~-----------~~~epi~tfraH~gPVl~v~v~~n 355 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAE-----------KDVEPILTFRAHEGPVLCVVVPSN 355 (577)
T ss_pred eeeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccc-----------cceeeeEEEecccCceEEEEecCC
Confidence 38889999999999999988 699999999999999943111110 011112238899999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCc-------ccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001386 408 GSLLGVAYSKHIVQLYAYHGGSD-------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1088)
Q Consensus 408 g~~las~~~dg~i~vwd~~~~~~-------~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~ 480 (1088)
+..+.+|+.||+|+.|++..... ......+.||.+.|+.+++|+... .|++++.||+++.|+...... .+
T Consensus 356 ~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~ 432 (577)
T KOG0642|consen 356 GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CT 432 (577)
T ss_pred ceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-cc
Confidence 99999999999999997652211 112235779999999999999888 699999999999999766655 44
Q ss_pred eccCC--ccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCC-------CCceEEEEEccCCCEEEEEeeCC
Q 001386 481 FEGHG--APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 481 ~~~~~--~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
+.... +.-.++.+..+. -...++...-+.--+.+++.......+... ...+..+...|.+...+++..
T Consensus 433 f~~~~e~g~Plsvd~~ss~-~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he-- 509 (577)
T KOG0642|consen 433 FGEPKEHGYPLSVDRTSSR-PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE-- 509 (577)
T ss_pred cCCccccCCcceEeeccch-hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc--
Confidence 43222 222333332111 011222222222333333333333332221 124667788888888888765
Q ss_pred CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCC
Q 001386 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1088)
+..|+++|..++..+.....|. ..++++++.|+|.+|++++.|+.+++|.+....++.....+
T Consensus 510 --d~~Ir~~dn~~~~~l~s~~a~~---~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 510 --DRSIRFFDNKTGKILHSMVAHK---DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred --CCceecccccccccchheeecc---ceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 5569999999999999998888 89999999999999999999999999999776666554433
No 192
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=7.5e-16 Score=147.47 Aligned_cols=289 Identities=18% Similarity=0.263 Sum_probs=205.6
Q ss_pred eecccCCCCceeeeec--CCCCeEEEEEcc----cCcEEEEec--CCCcceeeeceeeeeeccccccceeeeecCCCCCe
Q 001386 328 QTLIEGSSSPMSMDFH--PVQHTLLLVGTN----VGDTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~s--pdg~~lla~g~~----dg~i~iwd~--~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V 399 (1088)
.++..+- .+.++.|| |+.+..||.|+. .+.|.|-.+ .+++.+... -..|.-++
T Consensus 39 y~Y~ap~-~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a------------------~fd~~YP~ 99 (364)
T KOG0290|consen 39 YTYNAPW-PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDA------------------NFDHPYPV 99 (364)
T ss_pred EEecCCC-ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccC------------------CCCCCCCc
Confidence 3444444 77888888 667778999986 245555544 344433221 13588999
Q ss_pred EEEEECCCC-----CEEEEEeCCCEEEEEEccCCC-cccceeE-----eccCCCCEEEEEecCCCCcEEEEEEeCCCcEE
Q 001386 400 NRVVWSPDG-----SLLGVAYSKHIVQLYAYHGGS-DARQQLE-----IDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1088)
Q Consensus 400 ~~l~~s~dg-----~~las~~~dg~i~vwd~~~~~-~~~~~~~-----~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~ 468 (1088)
+.+-|.||. ++||++ .| .+++|.+...+ .+..... -..+.+++++..|+.-..+ ++.++|-|-+..
T Consensus 100 tK~~wiPd~~g~~pdlLATs-~D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTCT 176 (364)
T KOG0290|consen 100 TKLMWIPDSKGVYPDLLATS-SD-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTCT 176 (364)
T ss_pred cceEecCCccccCcchhhcc-cC-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeEE
Confidence 999999987 356664 33 49999998422 1111111 2245678999999987666 899999999999
Q ss_pred EEeCCCCce---eEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceE-EecCC--CCceEEEEEccC-C
Q 001386 469 VWDAVTGSR---TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAP--GLGCTRMAYSAN-G 541 (1088)
Q Consensus 469 vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~--~~~v~~~~~s~~-g 541 (1088)
|||+++|.. ...+-.|...|..++|.. +....+++.+.||.||++|++..+... .+..+ ..+...++|++. -
T Consensus 177 iWdie~~~~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDp 255 (364)
T KOG0290|consen 177 IWDIETGVSGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDP 255 (364)
T ss_pred EEEEeeccccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCc
Confidence 999998743 567788999999999975 344689999999999999999876533 33333 346778888884 4
Q ss_pred CEEEEEeeCCCCceeEEEEeCCC-CceeEEEeccccccccEEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCee------e
Q 001386 542 RRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQL------L 613 (1088)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~------~ 613 (1088)
+++|+...+ ...|.+.|++. ...+..+++|. ..|+.++|.|.. ..++++++|..+.+||+...-. +
T Consensus 256 nymATf~~d---S~~V~iLDiR~P~tpva~L~~H~---a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPi 329 (364)
T KOG0290|consen 256 NYMATFAMD---SNKVVILDIRVPCTPVARLRNHQ---ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPI 329 (364)
T ss_pred hHHhhhhcC---CceEEEEEecCCCcceehhhcCc---ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCch
Confidence 667766543 34589999985 45778888888 999999999974 6788899999999999976322 1
Q ss_pred EEEeCCCCCCCCceEEEec-CCCEEEEEeCCCcEEEE
Q 001386 614 TTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKIL 649 (1088)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw 649 (1088)
.... ....|+.+.|++ .+..++++.. +++.+.
T Consensus 330 lay~---a~~EVNqi~Ws~~~~Dwiai~~~-kkleiL 362 (364)
T KOG0290|consen 330 LAYT---AGGEVNQIQWSSSQPDWIAICFG-KKLEIL 362 (364)
T ss_pred hhhh---ccceeeeeeecccCCCEEEEEec-CeeeEE
Confidence 1121 223689999996 5667777664 355443
No 193
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.73 E-value=9.2e-18 Score=182.14 Aligned_cols=288 Identities=15% Similarity=0.232 Sum_probs=225.5
Q ss_pred ceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCc
Q 001386 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1088)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 645 (1088)
+.++.+.+|. ..|.|+.|...|.++++|+.|..++||.++++.++....+|.+ .++.++.+.+..++++++.|..
T Consensus 181 k~ikrLlgH~---naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~--ditdlavs~~n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 181 KNIKRLLGHR---NAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSG--DITDLAVSSNNTMIAAASNDKV 255 (1113)
T ss_pred HHHHHHHhhh---hheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCcc--ccchhccchhhhhhhhcccCce
Confidence 4455666777 8999999999999999999999999999999999999998765 6999999999999999999999
Q ss_pred EEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCccee
Q 001386 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 725 (1088)
Q Consensus 646 i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~ 725 (1088)
|++|.+..+.++..+++|.+.|++++|+|. .+.+.||++++||..... ....
T Consensus 256 IrvWrl~~~~pvsvLrghtgavtaiafsP~--------------------------~sss~dgt~~~wd~r~~~--~~y~ 307 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPR--------------------------ASSSDDGTCRIWDARLEP--RIYV 307 (1113)
T ss_pred EEEEecCCCchHHHHhccccceeeeccCcc--------------------------ccCCCCCceEeccccccc--cccC
Confidence 999999999999999999999999999974 256778999999965110 0000
Q ss_pred eecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEE
Q 001386 726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 805 (1088)
Q Consensus 726 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 805 (1088)
-.-+.......+.++.|..++..+.+++.++.-..|.+..-.. +...+.-+.
T Consensus 308 prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~----------------------------~~~~lif~t 359 (1113)
T KOG0644|consen 308 PRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW----------------------------RSNLLIFVT 359 (1113)
T ss_pred CCCCCcccccceeeeeccccccccccccCCcccccchhhHhhh----------------------------hccceEEEe
Confidence 0001112335677788888899999999998888776542211 111111122
Q ss_pred EecCC-CEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee-cccc
Q 001386 806 LSKND-AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHS 882 (1088)
Q Consensus 806 ~s~dg-~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l-~~h~ 882 (1088)
.+.|- .+.+++- +-.+++|++.+|...+.+.+|...+..+.++|.+.+...+++.||...|||+..|..++.. .+|
T Consensus 360 ~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh- 438 (1113)
T KOG0644|consen 360 RSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH- 438 (1113)
T ss_pred ccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc-
Confidence 22222 3344443 6679999999999999999999999999999988888889999999999999988766544 455
Q ss_pred CCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q 001386 883 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 915 (1088)
Q Consensus 883 ~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~ 915 (1088)
+.+..-+||+||..++....-|.+.|.....++
T Consensus 439 ~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 439 GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 556778999999999988888989888776544
No 194
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.7e-16 Score=155.70 Aligned_cols=292 Identities=13% Similarity=0.175 Sum_probs=200.5
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEec--CCC-CceE
Q 001386 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APG-LGCT 533 (1088)
Q Consensus 457 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~-~~v~ 533 (1088)
.++++-..|.|++||..+|+.+..++++...++.+.|......+.+.+++.||+|++||++.......+. .+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 5777888999999999999999999999999999999775566789999999999999999877654433 332 3566
Q ss_pred EEEEccCCCEEEEEeeCCCCceeEEEEeCCCCce-eEEE-eccccccccEEEEEEeCCC-CEEEEEeCCCcEEEEEcCCC
Q 001386 534 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTY-QGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKV 610 (1088)
Q Consensus 534 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~-~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~ 610 (1088)
+++..-.++.++++..-...+..+.+||.+..+. ++.+ ..|. +.|++++|+|.. +.|++||.||.|.+||+...
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~---DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHN---DDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhcc---CcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 6666667888888876666678899999997765 4444 3444 899999999964 68889999999999998764
Q ss_pred e----eeEEEeCCCCCCCCceEEEecCC-CEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccC
Q 001386 611 Q----LLTTIDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIAN 685 (1088)
Q Consensus 611 ~----~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~ 685 (1088)
. ++.++.. ...|.++.|..++ +.+.+-+..++..+|+++.+.....+........... . ...
T Consensus 199 ~EeDaL~~viN~---~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r-~---------~~~ 265 (376)
T KOG1188|consen 199 NEEDALLHVINH---GSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLR-K---------EDN 265 (376)
T ss_pred cchhhHHHhhcc---cceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHH-h---------hhh
Confidence 2 2233332 2348889999877 4588888899999999998865443332111000000 0 000
Q ss_pred CceeecCCCCCCCCccccccc-CccceeccccccC-CCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEc
Q 001386 686 GSVSVNEDPKEDVKPEISVEA-ENKSEVEKPLFAR-PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 763 (1088)
Q Consensus 686 ~~~~~~~~~~~~~~~l~~~~~-d~~i~vw~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~ 763 (1088)
..-.++.....++...+.++. .+...++-+.... ............+|..-|+++.|...+..+.+|+.||.+.+|..
T Consensus 266 ~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 266 CDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred hhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 000111111223333333333 4555555533211 11222233344457777888999999999999999999999986
Q ss_pred c
Q 001386 764 P 764 (1088)
Q Consensus 764 ~ 764 (1088)
+
T Consensus 346 ~ 346 (376)
T KOG1188|consen 346 E 346 (376)
T ss_pred C
Confidence 3
No 195
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2.9e-16 Score=154.13 Aligned_cols=275 Identities=14% Similarity=0.163 Sum_probs=193.1
Q ss_pred EEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC--CCCEEEEEeCCCEEEEEEcc
Q 001386 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGVAYSKHIVQLYAYH 426 (1088)
Q Consensus 349 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~--dg~~las~~~dg~i~vwd~~ 426 (1088)
.+|++-..|+|+|||..+|+.+.. +++|...+..++|.. ....+.+++.||+|++||+.
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 678888889999999999988866 677888888999987 46788999999999999999
Q ss_pred CCCcccceeEeccCC-CCEEEEEecCCCCcEEEEEEe----CCCcEEEEeCCCCce-eEEe-ccCCccEEEEeeeeeCCc
Q 001386 427 GGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCG----DDKTIKVWDAVTGSR-TYSF-EGHGAPVYSLCPHAKENI 499 (1088)
Q Consensus 427 ~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~s----~d~~i~vwd~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~ 499 (1088)
+......+ .+.+|. .+..+++-...++ .+++|. .|-.|.+||++..+. +..+ ..|...|+++.|+|+ +.
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~-~p 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS-DP 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC-CC
Confidence 87654433 355665 4667777765666 566664 356799999998766 5444 679999999999997 44
Q ss_pred eEEEEEecCCeEEEEECCCCCc---eEEecCCCCceEEEEEccCC-CEEEEEeeCCCCceeEEEEeCCCCceeEEEeccc
Q 001386 500 HFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1088)
Q Consensus 500 ~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1088)
.+|++||.||-|.++|+..... ......+...|.++.|..++ +.+.+.+. .....+|+++.+.....+....
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENPD 254 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCcc
Confidence 7999999999999999976533 22333456679999999988 33444443 3348999998887655444321
Q ss_pred cc----------cccEEEEEEeCCCCEEEEEeC-CCcEEEEEcC---CCe---eeEEEeCCCCCCCCceEEEecCCCEEE
Q 001386 576 LQ----------HNSVSVVHFDTAKDQILAAGD-DHVIKIWDMN---KVQ---LLTTIDAGGGLPENPRICFNKNGTLLA 638 (1088)
Q Consensus 576 ~~----------~~~v~~~~~~~~~~~l~~~s~-dg~i~iwd~~---~~~---~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1088)
.. ..-|.+. ...++..++.++. -++..++-+. ++. .+..+.+ ++...|.++.|...+.++.
T Consensus 255 ~~~~d~r~~~~~dY~I~~~-~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~ 332 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVINEH-SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLY 332 (376)
T ss_pred chhhhHHhhhhhhheeecc-cCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceee
Confidence 00 0111111 1223344444433 5565555433 333 3333333 2334578888988899999
Q ss_pred EEeCCCcEEEEeCC
Q 001386 639 VIANENRIKILETP 652 (1088)
Q Consensus 639 ~~~~dg~i~iwd~~ 652 (1088)
+|+.||.+.+|...
T Consensus 333 TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 333 TGGEDGLLQAWKVE 346 (376)
T ss_pred ccCCCceEEEEecC
Confidence 99999999999864
No 196
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.72 E-value=5.7e-15 Score=146.84 Aligned_cols=241 Identities=11% Similarity=0.172 Sum_probs=187.1
Q ss_pred CCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEEcCCceee
Q 001386 798 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVI 875 (1088)
Q Consensus 798 ~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg--~i~lwd~~~~~~~ 875 (1088)
...+..+.|..+...|..|+....++|..+..............|..+-||. .++|..+.+. .++++++..+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 4456677788899999999977788888876655433444455677788876 3666666544 5999999988877
Q ss_pred eeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-E--eC
Q 001386 876 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V--HE 952 (1088)
Q Consensus 876 ~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~--~d 952 (1088)
..+. -..+|.+|.++. +.|+++=.+. |+|||+++ .+.+...+........+..+++++.+.++|. + ..
T Consensus 82 Ce~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~-----MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKD-----MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred EEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEeccc-----ceeehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence 7766 445689999864 4566665544 99999998 4455555544333345777777778889998 3 45
Q ss_pred CeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCc-EEEEEcCCCceEEEeccccccCCCCccccccceE
Q 001386 953 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1031 (1088)
Q Consensus 953 ~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1088)
|.|.|||+.+-+....+. .|.+.+.+++|++||.+|||+|..|+ |||+.+.+|+.+.+++.+.. + +...+
T Consensus 153 GdV~l~d~~nl~~v~~I~-aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~-------~~IyS 223 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTIN-AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-P-------VSIYS 223 (391)
T ss_pred ceEEEEEcccceeeeEEE-ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-e-------eEEEE
Confidence 889999999999888855 89999999999999999999999997 69999999999999985543 1 23456
Q ss_pred EEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 1032 IAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 1032 ~~~~p~d~~~l~~~~~dg~v~~w~l~~~~ 1060 (1088)
++|+| |+.+|.+.+..++|++|.|....
T Consensus 224 L~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 224 LSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 89999 89999999999999999996644
No 197
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.72 E-value=3.6e-16 Score=149.41 Aligned_cols=228 Identities=13% Similarity=0.162 Sum_probs=177.0
Q ss_pred CCcEEEEEcCCcee---EEEecCCCCCeEEEEEcCCCCcEEEEEeCC-------CeEEEEEcCC---------ceeeeee
Q 001386 818 GGVISLYIVMTFKT---ILTIMPPSPTATSLAFNPHDNNVIAIGMDD-------STILIYNARS---------SEVISKL 878 (1088)
Q Consensus 818 dg~i~iwd~~~~~~---~~~~~~~~~~i~~l~~sp~d~~~lasg~~d-------g~i~lwd~~~---------~~~~~~l 878 (1088)
++.|.+.++..... -..|..|.+.|..++-+|.+.++|++...+ ..+.||.+.. -+++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 57788877765432 234667889999999999888899887664 2578998854 2345555
Q ss_pred c-cccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcC--CCCEEEEEeCCeE
Q 001386 879 E-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK--DQTRFLLVHETHL 955 (1088)
Q Consensus 879 ~-~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~--dg~~l~~~~d~~i 955 (1088)
. .+-+.|.|+.|.|++..+++-. |..|.+|++..+.............. .....++-+||| ||+.+++..|+++
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e--~~~~ftsg~WspHHdgnqv~tt~d~tl 195 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAE--MRHSFTSGAWSPHHDGNQVATTSDSTL 195 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccccc--ccceecccccCCCCccceEEEeCCCcE
Confidence 5 4667999999999999999776 77899999998765433332222211 123578889998 8999999999999
Q ss_pred EEEEcCcceeeeeeecCCCcCEEEEEEeeCCCE-EEEEeCCCcEEEEEcCCCceE-EEeccccccCCCCccccccceEEE
Q 001386 956 AIYEAEELTCLKQWFPISSVPISQATFSCDCRM-VFTSFVDGTLSIHEASNLEVQ-CRILSTAYLRPTTSCLHVYPHAIA 1033 (1088)
Q Consensus 956 ~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~-l~s~s~dg~v~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1088)
..||+++..+...+..+|...|..+.|.|+.++ |++|+.||.|++||...-+.- .... ++.-+.-++.
T Consensus 196 ~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~----------~HsHWvW~VR 265 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP----------GHSHWVWAVR 265 (370)
T ss_pred EEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC----------CCceEEEEEE
Confidence 999999999999999999999999999998865 789999999999998865432 2221 2234667799
Q ss_pred ECCCCCCEEEEEeCCCcEEEEeCCC
Q 001386 1034 AHPLKPTQFAVGLTNGEVYVIEPNE 1058 (1088)
Q Consensus 1034 ~~p~d~~~l~~~~~dg~v~~w~l~~ 1058 (1088)
|+|...+++++|+.|..|.+|....
T Consensus 266 fn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 266 FNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred ecCccceEEEecCCCceeEEEeccc
Confidence 9998889999999999999998743
No 198
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.71 E-value=1.5e-15 Score=145.33 Aligned_cols=183 Identities=17% Similarity=0.233 Sum_probs=130.4
Q ss_pred CeeEEEEec--CCCEEEEEeCCcEEEEEcCCceeEEEec-CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-ceee
Q 001386 800 AVPCFALSK--NDAYLFSASGGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVI 875 (1088)
Q Consensus 800 ~v~~~~~s~--dg~~l~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~-~~~~ 875 (1088)
..++-+|+| ||..+++.+++++..||+.+.+....+. .|...+..+.|.|+...+|+++++||.|+|||.+. ...+
T Consensus 172 ~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv 251 (370)
T KOG1007|consen 172 SFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPV 251 (370)
T ss_pred eecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccc
Confidence 344456666 8999999999999999999887776664 67788999999996667899999999999999986 4578
Q ss_pred eeeccccCCeeEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCC
Q 001386 876 SKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHET 953 (1088)
Q Consensus 876 ~~l~~h~~~V~~l~~s~d-g~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~ 953 (1088)
..+.+|+.-|.++.|+|. .+++.|+|.|..|.+|...+-.... .+.|-.|..-.-. ....
T Consensus 252 ~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~------------------qi~~~~dese~e~~dsee 313 (370)
T KOG1007|consen 252 QELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ------------------QIEFEDDESESEDEDSEE 313 (370)
T ss_pred cccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccc------------------ccccccccccCcchhhHH
Confidence 999999999999999984 4778899999999999877532111 1111111100000 0000
Q ss_pred eEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCE-EEEEeCCCcEEEEEcC
Q 001386 954 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM-VFTSFVDGTLSIHEAS 1004 (1088)
Q Consensus 954 ~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~-l~s~s~dg~v~vwd~~ 1004 (1088)
+++ -+..| .+.+ +..|...|.+++||.-..+ +|+-+.||.+.|=.+.
T Consensus 314 r~k--pL~dg-~l~t-ydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 314 RVK--PLQDG-QLET-YDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred hcc--ccccc-cccc-ccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 111 01111 1122 4578999999999986665 5678899999886654
No 199
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=2.2e-14 Score=157.86 Aligned_cols=275 Identities=14% Similarity=0.198 Sum_probs=177.8
Q ss_pred eEEEEEcccCcEEEEecCC-CcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe-CCCEEEEEEc
Q 001386 348 TLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAY 425 (1088)
Q Consensus 348 ~lla~g~~dg~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~-~dg~i~vwd~ 425 (1088)
+++++...++.|.+||+.+ |+...... + .+.+....++++||+++|++++ .++.|.+|++
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~-----------------~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~ 64 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQV-----------------V-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRI 64 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeE-----------------E-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEE
Confidence 3455667789999999974 33221111 1 1345677899999999987764 5778999999
Q ss_pred cCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEe-CCCcEEEEeCCC-Cc---eeEEeccCCccEEEEeeeeeCCce
Q 001386 426 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDAVT-GS---RTYSFEGHGAPVYSLCPHAKENIH 500 (1088)
Q Consensus 426 ~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s-~d~~i~vwd~~~-~~---~~~~~~~~~~~v~~~~~~~~~~~~ 500 (1088)
.....+...... ...+....++|+|+++ ++++++ .++.|.+||+.+ +. .+..+.+ ......+++ +++++
T Consensus 65 ~~~g~l~~~~~~-~~~~~p~~i~~~~~g~--~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~--~p~g~ 138 (330)
T PRK11028 65 ADDGALTFAAES-PLPGSPTHISTDHQGR--FLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANI--DPDNR 138 (330)
T ss_pred CCCCceEEeeee-cCCCCceEEEECCCCC--EEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEe--CCCCC
Confidence 732222211122 2334567899999999 455444 488999999874 32 2233332 233455666 44666
Q ss_pred EEE-EEecCCeEEEEECCCCCceEE------ecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC--Cc--eeE
Q 001386 501 FIF-SISVDGKIKAWLYDSLGARVD------YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GA--IKR 569 (1088)
Q Consensus 501 ~l~-s~~~dg~i~iwd~~~~~~~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~--~~--~~~ 569 (1088)
+++ +...++.|.+||+++...... ....+.....++|+|+|++++++.. ..+.|.+|++.. ++ .+.
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~ 215 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQ 215 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEE
Confidence 664 555679999999986432211 1122345678999999999988763 356799999873 33 233
Q ss_pred EEecccc---ccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCe----eeEEEeCCCCCCCCceEEEecCCCEEEEEe
Q 001386 570 TYQGLQL---QHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1088)
Q Consensus 570 ~~~~~~~---~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1088)
.+..... +......+.++|++++++++. .++.|.+|++.... .+...... .....++++|+|++|+++.
T Consensus 216 ~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 216 TLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred EEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEE
Confidence 3332210 112234688999999999985 47899999986532 22332221 1346799999999999887
Q ss_pred C-CCcEEEEeCC
Q 001386 642 N-ENRIKILETP 652 (1088)
Q Consensus 642 ~-dg~i~iwd~~ 652 (1088)
. +++|.+|++.
T Consensus 293 ~~~~~v~v~~~~ 304 (330)
T PRK11028 293 QKSHHISVYEID 304 (330)
T ss_pred ccCCcEEEEEEc
Confidence 6 8899999875
No 200
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=4.1e-15 Score=166.06 Aligned_cols=302 Identities=17% Similarity=0.193 Sum_probs=208.8
Q ss_pred cEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCC-CCCCCceEEEec--CCCEEEEEeCCCcEEEEeCCCCCc
Q 001386 580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNK--NGTLLAVIANENRIKILETPESNS 656 (1088)
Q Consensus 580 ~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~--~~~~l~~~~~dg~i~iwd~~~~~~ 656 (1088)
....+.|+|-...++++.+...|+|||.+.++.+..+..+. ....|..+.+-. |..++.+++.||.|+||+--....
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 45677899999999999988999999999999988876542 223466676654 556788888899999886432210
Q ss_pred ccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCcccccc
Q 001386 657 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK 736 (1088)
Q Consensus 657 ~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 736 (1088)
+...++++
T Consensus 1146 ----------------------------------------~~~eLVTa-------------------------------- 1153 (1387)
T KOG1517|consen 1146 ----------------------------------------KKPELVTA-------------------------------- 1153 (1387)
T ss_pred ----------------------------------------CCceeEEe--------------------------------
Confidence 00001111
Q ss_pred EEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEec-CCCEEEE
Q 001386 737 ISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-NDAYLFS 815 (1088)
Q Consensus 737 i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~ 815 (1088)
|++=...+.+....|.+ +.|-. .|.++++
T Consensus 1154 -----w~~Ls~~~~~~r~~~~v---------------------------------------------~dWqQ~~G~Ll~t 1183 (1387)
T KOG1517|consen 1154 -----WSSLSDQLPGARGTGLV---------------------------------------------VDWQQQSGHLLVT 1183 (1387)
T ss_pred -----eccccccCccCCCCCee---------------------------------------------eehhhhCCeEEec
Confidence 00000001111111111 22222 3445555
Q ss_pred EeCCcEEEEEcCCceeEEEec-CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc---eeeeeeccccCC--eeEEE
Q 001386 816 ASGGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEGHSKR--VTGLV 889 (1088)
Q Consensus 816 ~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~---~~~~~l~~h~~~--V~~l~ 889 (1088)
|.-..|+|||.........+. +....++++.-+...|+++++|..||.|++||.+.. ..+...+.|+.. |..+.
T Consensus 1184 Gd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~s 1263 (1387)
T KOG1517|consen 1184 GDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLS 1263 (1387)
T ss_pred CCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEE
Confidence 556779999998877776665 344678888776657899999999999999998764 356778889887 99999
Q ss_pred ECCCCCE-EEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeee
Q 001386 890 FSDALNI-LVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQ 968 (1088)
Q Consensus 890 ~s~dg~~-las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~ 968 (1088)
+-+.|-- |++|+.||.|++||+.......... ...+...++..+++..+++...+|+|+.+.|.||++. |+.+..
T Consensus 1264 lq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~---iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~-G~~l~~ 1339 (1387)
T KOG1517|consen 1264 LQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT---IVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLS-GEQLNI 1339 (1387)
T ss_pred eecCCCcceeeeccCCeEEEEecccCcccccce---eeeccccCccceeeeeccCCCeeeecCcceEEEEecC-hhhhcc
Confidence 9987754 9999999999999998742221111 1122211224899999999999999877999999987 444333
Q ss_pred ee------cCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCc
Q 001386 969 WF------PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1007 (1088)
Q Consensus 969 ~~------~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~ 1007 (1088)
+. ....+.+.|++|.|---+||+|+.|.+|.||....+.
T Consensus 1340 ~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1340 IKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 22 1225678999999999899999999999999877654
No 201
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=7.5e-15 Score=164.06 Aligned_cols=299 Identities=14% Similarity=0.180 Sum_probs=210.3
Q ss_pred cccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC--C
Q 001386 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--D 407 (1088)
Q Consensus 330 l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~--d 407 (1088)
+.+....-..+.|+|-.. .++++...-.|+|||.+.++.+..+.- -......|+.+.+-. |
T Consensus 1060 ~~~n~~~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~n----------------~~~~~t~Vs~l~liNe~D 1122 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGFDN----------------GAFPDTRVSDLELINEQD 1122 (1387)
T ss_pred HhcCCCCCceeeecCCCc-eeEEcCCcceEEEEecccCceeccccC----------------CCCCCCccceeeeecccc
Confidence 344444677888999887 577777678999999999988754221 112346789999876 6
Q ss_pred CCEEEEEeCCCEEEEEEcc-CC-Ccccc---eeEeccC----CCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001386 408 GSLLGVAYSKHIVQLYAYH-GG-SDARQ---QLEIDAH----VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1088)
Q Consensus 408 g~~las~~~dg~i~vwd~~-~~-~~~~~---~~~~~~h----~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~ 478 (1088)
..++.+|+.||.|+||+-- .+ +..+. ...+.++ .+.=.-+.|..... .|+++|.-..|+|||.....+.
T Consensus 1123 ~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G--~Ll~tGd~r~IRIWDa~~E~~~ 1200 (1387)
T KOG1517|consen 1123 DALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG--HLLVTGDVRSIRIWDAHKEQVV 1200 (1387)
T ss_pred hhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC--eEEecCCeeEEEEEecccceeE
Confidence 7789999999999999643 22 11111 1112121 11113456776666 5666666889999999988888
Q ss_pred EEecc-CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc---eEEecCCCCc--eEEEEEccCCCE-EEEEeeCC
Q 001386 479 YSFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLG--CTRMAYSANGRR-LFSCGTSK 551 (1088)
Q Consensus 479 ~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~--v~~~~~s~~g~~-l~~~~~~~ 551 (1088)
+.+.. ....|+++.-.-. .|..+++|..||.|++||.+.... +.....|... |..+.+-+.|-. |++++.+
T Consensus 1201 ~diP~~s~t~vTaLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~- 1278 (1387)
T KOG1517|consen 1201 ADIPYGSSTLVTALSADLV-HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQD- 1278 (1387)
T ss_pred eecccCCCccceeeccccc-CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccC-
Confidence 77643 4455777755433 468999999999999999886543 4455666665 999999987766 8888764
Q ss_pred CCceeEEEEeCCCCceeEE--EeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCC-----CCCCC
Q 001386 552 EGESFLVEWNESEGAIKRT--YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GGLPE 624 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~ 624 (1088)
|.|++||++....... +..|...++.++++..+++...+++|+. +.|.||++.. +.+..+... .....
T Consensus 1279 ---G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs 1353 (1387)
T KOG1517|consen 1279 ---GDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGS 1353 (1387)
T ss_pred ---CeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCC
Confidence 4499999987422221 2222211235899999999999999998 9999999864 444444322 12345
Q ss_pred CceEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 001386 625 NPRICFNKNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 625 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
+.|++|+|-.-++|+|+.|..|.||.....
T Consensus 1354 ~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1354 VSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cceeeecchhHhhhhccCCceEEEeecCCc
Confidence 789999999999999999999999987754
No 202
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=5.8e-16 Score=157.04 Aligned_cols=198 Identities=17% Similarity=0.205 Sum_probs=164.0
Q ss_pred eEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecc
Q 001386 802 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 880 (1088)
Q Consensus 802 ~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~ 880 (1088)
.+++|+.+|..++++. ||++|+|+..+...+.....|...|.++.||| |+++|++-+.| ..+||++++|..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999997 99999999888888888888999999999999 89999999999 899999999977766553
Q ss_pred --ccCCeeEEEECCCC-----CEEEEEeCCCcEEEEEcCCCceeee-eeeecCCCCccCCCCeEEEEEcCCCCEEEE-Ee
Q 001386 881 --HSKRVTGLVFSDAL-----NILVSSGGDAQIFVWDVDGWGIQTC-RSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VH 951 (1088)
Q Consensus 881 --h~~~V~~l~~s~dg-----~~las~s~Dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~ 951 (1088)
.......+.|+.|+ ..++....-+.|+.|++..+..... +..+....+ ..|++++.|+||+++|. +.
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEecc
Confidence 23346678888887 4444555667788888876543211 112222222 25999999999999999 58
Q ss_pred CCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCC
Q 001386 952 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1005 (1088)
Q Consensus 952 d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~ 1005 (1088)
||.|-+++..+.+++.-....|...|+.+.|+||.+++++.+.|....|..+.-
T Consensus 302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999999988899999999999999999999999999999987765
No 203
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.67 E-value=1.3e-13 Score=150.12 Aligned_cols=318 Identities=10% Similarity=0.122 Sum_probs=200.7
Q ss_pred ceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecC
Q 001386 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1088)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1088)
++.|.+.|..+.+.+..+.... ..-..+.|+|||+++++++.||.|.++|+.+++.+.++..... ..++++|+|
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~---~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~---~~~i~~s~D 88 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGG---APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN---PRGIAVSPD 88 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-ST---TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE---EEEEEE--T
T ss_pred CCEEEEEECCCCeEEEEEcCCC---CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC---cceEEEcCC
Confidence 5679999999999999998654 3345578999999999999999999999999999999986543 578999999
Q ss_pred CCEEEEEe-CCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCcccee
Q 001386 634 GTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1088)
Q Consensus 634 ~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v 712 (1088)
|++++++. ..+.+.++|..+.+.++.+......
T Consensus 89 G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~---------------------------------------------- 122 (369)
T PF02239_consen 89 GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMP---------------------------------------------- 122 (369)
T ss_dssp TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-----------------------------------------------
T ss_pred CCEEEEEecCCCceeEeccccccceeeccccccc----------------------------------------------
Confidence 99998776 5899999999988776654321100
Q ss_pred ccccccCCCcceeeecCCccccccEEEEEEecCCceEEEe-ccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeec
Q 001386 713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL-ASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVND 791 (1088)
Q Consensus 713 w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1088)
......++..+..++....++.. -..+.+.+.|+..... +....
T Consensus 123 -----------------~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~------------------~~~~~ 167 (369)
T PF02239_consen 123 -----------------VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN------------------LKVTT 167 (369)
T ss_dssp -----------------TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC------------------EEEEE
T ss_pred -----------------ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc------------------cceee
Confidence 00023456677777777745444 4446665555433211 11111
Q ss_pred cCCCCCCCCeeEEEEecCCCEEEEEe--CCcEEEEEcCCceeEEEecC----CCCCeEEEEEcCC---------CCcEEE
Q 001386 792 TTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP----PSPTATSLAFNPH---------DNNVIA 856 (1088)
Q Consensus 792 ~~~~~~~~~v~~~~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~sp~---------d~~~la 856 (1088)
+ ..........|+|++++++++. .+.|.++|..+++.+..+.. |......+ .+|. .+...+
T Consensus 168 i---~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~ 243 (369)
T PF02239_consen 168 I---KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAI 243 (369)
T ss_dssp E---E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEE
T ss_pred e---cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceec
Confidence 1 1344566789999999988875 67899999999988776542 22333322 1221 222332
Q ss_pred EEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEE----eCCCcEEEEEcCCCceeeeeeeecCCCCccCC
Q 001386 857 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS----GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 932 (1088)
Q Consensus 857 sg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~----s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 932 (1088)
+.-....+.+||..+.+.+.++....++ .-+..+|+++++.+. ...++|.++|..+-+.. ..+....+
T Consensus 244 ~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~--~~i~~~~~----- 315 (369)
T PF02239_consen 244 PLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVV--KTITPGPG----- 315 (369)
T ss_dssp EEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEE--E-HHHHHT-----
T ss_pred ccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCccee--EEEeccCC-----
Confidence 2223345667899999999999987666 778889999999988 45588999999985311 11111111
Q ss_pred CCeEEEEEcCCCCEEEEE---eCCeEEEEEcCcceeeeeee
Q 001386 933 PSETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQWF 970 (1088)
Q Consensus 933 ~~v~~~~fs~dg~~l~~~---~d~~i~vwd~~~~~~~~~~~ 970 (1088)
..+.++.|++||+++-++ .++.|.+||..|.+.+..+.
T Consensus 316 ~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 316 KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp --EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 138899999999988774 33489999999999988754
No 204
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=6.1e-15 Score=166.97 Aligned_cols=235 Identities=13% Similarity=0.128 Sum_probs=162.6
Q ss_pred cCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCC---CEEEEEEccCCCccc
Q 001386 356 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDAR 432 (1088)
Q Consensus 356 dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~d---g~i~vwd~~~~~~~~ 432 (1088)
+..|.|||....... . +..|...+.+.+|||||++||.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~-~-------------------lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQF-I-------------------VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCce-E-------------------eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 468999998765422 1 55688899999999999999988654 469999999875322
Q ss_pred ceeEeccCCCCEEEEEecCCCCcEEEEE-EeCCCcEEEE--eCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEe-cC
Q 001386 433 QQLEIDAHVGNVNDLAFSAPCKQISVIT-CGDDKTIKVW--DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VD 508 (1088)
Q Consensus 433 ~~~~~~~h~~~v~~~~~s~d~~~l~l~s-~s~d~~i~vw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d 508 (1088)
+..+.+| ...++|+|||+ .|+. .+.+|.+.|| |+.++. +..+..+...+....|+ +||+.|+..+ .+
T Consensus 243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS--pDG~~i~f~s~~~ 313 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWS--PDGQSILFTSDRS 313 (429)
T ss_pred -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEEC--CCCCEEEEEECCC
Confidence 2233344 34689999999 4554 4567766555 666655 45566677777777774 5677666544 67
Q ss_pred CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeC
Q 001386 509 GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1088)
Q Consensus 509 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1088)
|...+|+++..........+.. .+..|+|||+++++.+. ..+.+||+.+++........ ....+.|+|
T Consensus 314 g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~-----~~~~~~~sP 381 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF-----LDESPSISP 381 (429)
T ss_pred CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC-----CCCCceECC
Confidence 8888998765433222222222 45789999999988764 23777999988765333222 234577999
Q ss_pred CCCEEEEEeCCCcEEEEEc--CCCeeeEEEeCCCCCCCCceEEEecC
Q 001386 589 AKDQILAAGDDHVIKIWDM--NKVQLLTTIDAGGGLPENPRICFNKN 633 (1088)
Q Consensus 589 ~~~~l~~~s~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1088)
+|++++.++.++.+.+|++ .+|+....+..+.+ .+...+|+|-
T Consensus 382 dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~ 426 (429)
T PRK01742 382 NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY 426 (429)
T ss_pred CCCEEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence 9999999999998888875 35777777765543 4778889874
No 205
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.66 E-value=4.7e-14 Score=160.58 Aligned_cols=256 Identities=13% Similarity=0.123 Sum_probs=181.4
Q ss_pred ecCCCCCeEEEEECCC-CCEEEEEeCCCEEEEEEccCC----CcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCc
Q 001386 392 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 466 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~d-g~~las~~~dg~i~vwd~~~~----~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~ 466 (1088)
+..|...|..++.+++ +.++++||.||+|++||...- ...+...++..-..++.++.+.+.++ .+|.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 6779999999998885 599999999999999998632 22333334444567899999999999 6888899999
Q ss_pred EEEEeCCC--Cce-----eEEeccC-CccEEEE-eeeeeCCceEEEEEecCCeEEEEECCCCCceE--EecCCCCceEEE
Q 001386 467 IKVWDAVT--GSR-----TYSFEGH-GAPVYSL-CPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRM 535 (1088)
Q Consensus 467 i~vwd~~~--~~~-----~~~~~~~-~~~v~~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~ 535 (1088)
|++.+++. .+. .+....+ .+.+.++ ++........++.+..-+.|..||.+...... ......+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 99999876 221 1111222 2334444 33322222478888899999999998876544 344556689999
Q ss_pred EEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCC---CCEEEEEe--CCCcEEEEEcCCC
Q 001386 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---KDQILAAG--DDHVIKIWDMNKV 610 (1088)
Q Consensus 536 ~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~s--~dg~i~iwd~~~~ 610 (1088)
+.+|-+.+++.|+. .|.+.+||++-+..+....... ..++..+..+|- ....++++ ..+.|.+|++.+|
T Consensus 1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~--~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPA--RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred EecCCceEEEEecC----CceEEEEEeecCceeecccCcc--cCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 99999999999975 6679999999888887766443 356766666553 34555544 5788999999999
Q ss_pred eeeEEEeCCCCCC-----------------CCceEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 611 QLLTTIDAGGGLP-----------------ENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1088)
Q Consensus 611 ~~~~~~~~~~~~~-----------------~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 655 (1088)
.+...+......+ .....++...+..+.+|+.|..|+.||.....
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 7777665431110 11223333445688999999999999988654
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=2.8e-15 Score=152.10 Aligned_cols=197 Identities=21% Similarity=0.212 Sum_probs=151.9
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeee
Q 001386 843 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL 922 (1088)
Q Consensus 843 ~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~ 922 (1088)
.+++|++ +|..|++|+.||++|||+..+...+.....|.+.|.++.|||||++|++.+.| ..+||++.++- .+
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~-----~~ 220 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA-----AL 220 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc-----hh
Confidence 7899999 89999999999999999998888888888899999999999999999999999 79999999973 22
Q ss_pred ecCCCCccCCCCeEEEEEcCCC---CEEE-E-E-eCCeEEEEEcCccee-----eeeeecCCCcCEEEEEEeeCCCEEEE
Q 001386 923 QTPDGVMTLAPSETHIQFHKDQ---TRFL-L-V-HETHLAIYEAEELTC-----LKQWFPISSVPISQATFSCDCRMVFT 991 (1088)
Q Consensus 923 ~~~~~~~~~~~~v~~~~fs~dg---~~l~-~-~-~d~~i~vwd~~~~~~-----~~~~~~~h~~~v~~l~fs~dg~~l~s 991 (1088)
+.... .........+.|+.|+ .+.+ + . .-+.|+.||+..... .++.. .....|++++.|+||++++.
T Consensus 221 a~~t~-~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 221 ARKTP-FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSDDGKFLAL 298 (398)
T ss_pred hhcCC-cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcCCCcEEEE
Confidence 22211 1111247788999888 3333 3 2 335677776654332 11111 22457999999999999999
Q ss_pred EeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001386 992 SFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1058 (1088)
Q Consensus 992 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~ 1058 (1088)
|+.||.|.|+++.+.+...-+. .. +....+.+.|+| |.+.+++.+.|.+..+..+.-
T Consensus 299 GT~dGsVai~~~~~lq~~~~vk------~a---H~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYVK------EA---HLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eccCCcEEEEEeceeeeeEeeh------hh---heeeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence 9999999999999888765443 11 224567899999 789999999999999999866
No 207
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.65 E-value=1.3e-13 Score=149.99 Aligned_cols=322 Identities=13% Similarity=0.144 Sum_probs=199.6
Q ss_pred EEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEecccccccc
Q 001386 501 FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 580 (1088)
Q Consensus 501 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 580 (1088)
++++-..+|.|.+.|..+.+....+......-..+.|+|||+++++++. ++.|.++|+.+++.+.++.... .
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~~v~~i~~G~----~ 79 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGKVVATIKVGG----N 79 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSSEEEEEE-SS----E
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCcccEEEEEecCC----C
Confidence 4456677899999999998888888776555556789999999999864 4579999999999999987644 5
Q ss_pred EEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCC-----CCCCceEEEecCCCEEEEE-eCCCcEEEEeCCC
Q 001386 581 VSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGG-----LPENPRICFNKNGTLLAVI-ANENRIKILETPE 653 (1088)
Q Consensus 581 v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~v~~s~~~~~l~~~-~~dg~i~iwd~~~ 653 (1088)
...+++++||++++++. .++.+.++|.++.+.++.+..... ...+..+..+|....+++. -+.+.|.+.|...
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 78899999999999865 789999999999999998875422 2245567778877755544 4457777777664
Q ss_pred CCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccc
Q 001386 654 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK 733 (1088)
Q Consensus 654 ~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 733 (1088)
.+.+.... +. .
T Consensus 160 ~~~~~~~~----------------------------------------------------------------i~-----~ 170 (369)
T PF02239_consen 160 PKNLKVTT----------------------------------------------------------------IK-----V 170 (369)
T ss_dssp SSCEEEEE----------------------------------------------------------------EE------
T ss_pred ccccceee----------------------------------------------------------------ec-----c
Confidence 32211000 00 1
Q ss_pred cccEEEEEEecCCceEEEe-ccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEE-------E
Q 001386 734 ANKISRLTYNNGGQAIFAL-ASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF-------A 805 (1088)
Q Consensus 734 ~~~i~~~~~s~~g~~l~~~-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-------~ 805 (1088)
........|+|++++++++ .....+-++|...... +..+..|.. .|..+...+ .
T Consensus 171 g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~---------v~~i~~g~~---------p~~~~~~~~php~~g~v 232 (369)
T PF02239_consen 171 GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL---------VALIDTGKK---------PHPGPGANFPHPGFGPV 232 (369)
T ss_dssp -TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE---------EEEEE-SSS---------BEETTEEEEEETTTEEE
T ss_pred cccccccccCcccceeeecccccceeEEEeeccceE---------EEEeecccc---------ccccccccccCCCcceE
Confidence 1233457888999887664 3456777777554322 111111211 122222222 1
Q ss_pred E--ecCCCEEEE-EeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEE----eCCCeEEEEEcCCceeeeee
Q 001386 806 L--SKNDAYLFS-ASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG----MDDSTILIYNARSSEVISKL 878 (1088)
Q Consensus 806 ~--s~dg~~l~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg----~~dg~i~lwd~~~~~~~~~l 878 (1088)
| +..+...++ .+.+.+.+||..+++.++++...... .-+..+| +++++.+. ...++|.|+|.++.+.+..+
T Consensus 233 w~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i 310 (369)
T PF02239_consen 233 WATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTI 310 (369)
T ss_dssp EEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-H
T ss_pred EeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEE
Confidence 1 222233222 23456678999999999999977666 7888899 88898887 45589999999999888887
Q ss_pred cccc-CCeeEEEECCCCCEEEEEe--CCCcEEEEEcCCCceeee
Q 001386 879 EGHS-KRVTGLVFSDALNILVSSG--GDAQIFVWDVDGWGIQTC 919 (1088)
Q Consensus 879 ~~h~-~~V~~l~~s~dg~~las~s--~Dg~i~iwd~~~~~~~~~ 919 (1088)
.... ..+..+.|++||+.+..+. .++.|.+||..+.+....
T Consensus 311 ~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~ 354 (369)
T PF02239_consen 311 TPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKR 354 (369)
T ss_dssp HHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred eccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Confidence 6433 3589999999999766544 334799999999765443
No 208
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.64 E-value=4.4e-14 Score=160.75 Aligned_cols=275 Identities=15% Similarity=0.185 Sum_probs=189.9
Q ss_pred chhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEE
Q 001386 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1088)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 402 (1088)
.+..+.+|..|+..|..++.++...-++++||.||+|++||...-..-. ...+ | ...+..-+..+.++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~r------S-----~ltys~~~sr~~~v 1104 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSAR------S-----ELTYSPEGSRVEKV 1104 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceee------e-----eEEEeccCCceEEE
Confidence 3578899999999999999988774489999999999999986432110 0000 0 11133357899999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEccCC--Cccc--cee--EeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc
Q 001386 403 VWSPDGSLLGVAYSKHIVQLYAYHGG--SDAR--QQL--EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1088)
Q Consensus 403 ~~s~dg~~las~~~dg~i~vwd~~~~--~~~~--~~~--~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~ 476 (1088)
.+.+.|..+|+++.||.|++.+++-. +... ... ........|..-+|....+...++.+..-+.|..||+.+..
T Consensus 1105 t~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1105 TMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred EeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh
Confidence 99999999999999999999998762 1110 000 11222223444466555443367778888999999998877
Q ss_pred eeEEec--cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCC-CCceEEEEEcc---CCCEEEEEeeC
Q 001386 477 RTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSA---NGRRLFSCGTS 550 (1088)
Q Consensus 477 ~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~---~g~~l~~~~~~ 550 (1088)
.+.+++ ...+.|++++.. +.+.+++.|+..|.+.+||++-+..+.....+ ..++..+..+| .....++++..
T Consensus 1185 ~~w~lk~~~~hG~vTSi~id--p~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~ 1262 (1431)
T KOG1240|consen 1185 DAWRLKNQLRHGLVTSIVID--PWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS 1262 (1431)
T ss_pred hHHhhhcCccccceeEEEec--CCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEeccc
Confidence 665553 346789999984 46679999999999999999988777655433 24666666655 44566666542
Q ss_pred CCCceeEEEEeCCCCceeEEEeccc----------------cccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeee
Q 001386 551 KEGESFLVEWNESEGAIKRTYQGLQ----------------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 613 (1088)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~ 613 (1088)
+.+.|.+|+..+|.....+.... .+.-....+++...+..+++|+.|..|+.||.......
T Consensus 1263 --~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1263 --SNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred --CCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 45669999999997776665431 00011223344445678899999999999998765443
No 209
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.64 E-value=4.2e-14 Score=157.33 Aligned_cols=250 Identities=17% Similarity=0.165 Sum_probs=183.1
Q ss_pred CCCCeEEEEECC-CCCEEEEEeCCCEEEEEEccCCCcc--cc-eeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEE
Q 001386 395 PGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDA--RQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1088)
Q Consensus 395 h~~~V~~l~~s~-dg~~las~~~dg~i~vwd~~~~~~~--~~-~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vw 470 (1088)
-...|.|++|+| +..++|.|..+|.|.+||+..+... .. ......|..+++.+.|..+-.+.-+++++.||.|+.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 568999999999 7788889999999999999987652 11 1123468899999999775543358999999999999
Q ss_pred eCCCCce------eEEec------cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc--------eEEecCCCC
Q 001386 471 DAVTGSR------TYSFE------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--------RVDYDAPGL 530 (1088)
Q Consensus 471 d~~~~~~------~~~~~------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~ 530 (1088)
+++.-.. ..... .-...++++.|.+. +-..++.|+.+|.|..-.-...+. ...+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~-~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT-DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccC-CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 8764322 11111 12346788888765 445789999999988733222211 225566778
Q ss_pred ceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC-CCceeEEEeccccccccEEEEEEeCCCCE-EEEEeCCCcEEEEEcC
Q 001386 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQ-ILAAGDDHVIKIWDMN 608 (1088)
Q Consensus 531 ~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~s~dg~i~iwd~~ 608 (1088)
+|+++.++|-+..++..+. +-+++||... ...++..+..+. ..+.+++|+|.... ++++..||.|.+||+.
T Consensus 400 ~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~~~~~---~~v~~vaWSptrpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSLDSSP---DYVTDVAWSPTRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred ceEeeecCCCccceeeeec----cceeEeccccCCCCcchhhhhcc---ceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence 9999999998877766653 5669999987 555665666555 66999999998654 5557789999999987
Q ss_pred CCe--eeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 001386 609 KVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 609 ~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
... ++.+.... ....+.+.|+++|+.|++|...|++.+|++...
T Consensus 473 ~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 473 QDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 543 33343333 345678889999999999999999999999743
No 210
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=2.1e-14 Score=162.59 Aligned_cols=231 Identities=18% Similarity=0.196 Sum_probs=152.9
Q ss_pred CCCchhheeecccCCCCceeeeecCCCCeEEEEEccc---CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCC
Q 001386 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV---GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 396 (1088)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~d---g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~ 396 (1088)
.+......+.|..|...+..++|||||++ ||..+.+ ..|++||+.+++...... +.+|
T Consensus 189 ~d~dg~~~~~lt~~~~~v~~p~wSPDG~~-la~~s~~~~~~~i~i~dl~tg~~~~l~~-----------------~~g~- 249 (429)
T PRK01742 189 ADYDGFNQFIVNRSSQPLMSPAWSPDGSK-LAYVSFENKKSQLVVHDLRSGARKVVAS-----------------FRGH- 249 (429)
T ss_pred ECCCCCCceEeccCCCccccceEcCCCCE-EEEEEecCCCcEEEEEeCCCCceEEEec-----------------CCCc-
Confidence 34445556778888889999999999996 4554432 479999999886432110 2233
Q ss_pred CCeEEEEECCCCCEEEEEe-CCCEEEEE--EccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCC
Q 001386 397 VSVNRVVWSPDGSLLGVAY-SKHIVQLY--AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473 (1088)
Q Consensus 397 ~~V~~l~~s~dg~~las~~-~dg~i~vw--d~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~ 473 (1088)
...++|||||++|++++ .+|.+.|| |+.+++. . .+..+...+...+|+|||+. +++++..++...||++.
T Consensus 250 --~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~ 322 (429)
T PRK01742 250 --NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMS 322 (429)
T ss_pred --cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEE
Confidence 34689999999998875 57765555 6666542 2 46667778889999999995 33445567888888765
Q ss_pred CC-ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCC
Q 001386 474 TG-SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1088)
Q Consensus 474 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~ 552 (1088)
.. .....+ .+.. ....| +++|+.|+..+.++ +.+||+.++........ ....++.|+|||+++++++.++.
T Consensus 323 ~~~~~~~~l-~~~~--~~~~~--SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~ 394 (429)
T PRK01742 323 ASGGGASLV-GGRG--YSAQI--SADGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGL 394 (429)
T ss_pred CCCCCeEEe-cCCC--CCccC--CCCCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCC
Confidence 32 222333 3433 33455 56778888887765 55599987765432222 23356789999999999875332
Q ss_pred CceeEEEEeCCCCceeEEEeccccccccEEEEEEeCC
Q 001386 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 589 (1088)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 589 (1088)
...+.+++ .+|..++.+..+. +.+...+|+|-
T Consensus 395 -~~~l~~~~-~~G~~~~~l~~~~---g~~~~p~wsp~ 426 (429)
T PRK01742 395 -GKVLQLVS-ADGRFKARLPGSD---GQVKFPAWSPY 426 (429)
T ss_pred -ceEEEEEE-CCCCceEEccCCC---CCCCCcccCCC
Confidence 22233343 3577778887766 67788888874
No 211
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.62 E-value=4.1e-14 Score=135.75 Aligned_cols=245 Identities=12% Similarity=0.220 Sum_probs=177.2
Q ss_pred cCCCCceeeeecCCCC----eEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-
Q 001386 332 EGSSSPMSMDFHPVQH----TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 406 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~----~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~- 406 (1088)
.|.-+++.+.|.||.+ .+||+.+ ..+++|.+...+.... +........-..+.++++++.|+.
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~----------~~~~L~~~kns~~~aPlTSFDWne~ 161 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVE----------LQSVLNNNKNSEFCAPLTSFDWNEV 161 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCcee----------hhhhhccCcccccCCcccccccccC
Confidence 6777999999999873 3677755 6899999975321111 001111112445778999999998
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE---Eecc
Q 001386 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY---SFEG 483 (1088)
Q Consensus 407 dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~---~~~~ 483 (1088)
|-++|.+++-|.+..|||+++|........+-.|...|..++|..++.. ++++.|.||.||++|++.-+--. +-..
T Consensus 162 dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~leHSTIIYE~p~ 240 (364)
T KOG0290|consen 162 DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSLEHSTIIYEDPS 240 (364)
T ss_pred CcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEecccccceEEecCCC
Confidence 8899999999999999999998542223357799999999999998877 89999999999999998755332 2222
Q ss_pred CCccEEEEeeeeeCCceEEEEEecC-CeEEEEECCCCC-ceEEecCCCCceEEEEEccCC-CEEEEEeeCCCCceeEEEE
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVD-GKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEW 560 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~~~~~i~iw 560 (1088)
...+...++|+.. |-.++++-..| ..|.+-|++... ....+..|...|..++|.|.. ..|.+++. +.+..+|
T Consensus 241 ~~~pLlRLswnkq-DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD----D~qaliW 315 (364)
T KOG0290|consen 241 PSTPLLRLSWNKQ-DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD----DCQALIW 315 (364)
T ss_pred CCCcceeeccCcC-CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC----cceEEEE
Confidence 2566777887654 44677776666 459999998765 466889999999999999965 56666653 6779999
Q ss_pred eCCCCce------eEEEeccccccccEEEEEEeCC-CCEEEEEeC
Q 001386 561 NESEGAI------KRTYQGLQLQHNSVSVVHFDTA-KDQILAAGD 598 (1088)
Q Consensus 561 d~~~~~~------~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~ 598 (1088)
|+.+.-. +-.+. ..+.|+.+.|++. +.+++.+..
T Consensus 316 Dl~q~~~~~~~dPilay~----a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 316 DLQQMPRENGEDPILAYT----AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred ecccccccCCCCchhhhh----ccceeeeeeecccCCCEEEEEec
Confidence 9975422 11122 1367999999964 556666553
No 212
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.62 E-value=5.1e-11 Score=122.31 Aligned_cols=415 Identities=12% Similarity=0.122 Sum_probs=232.3
Q ss_pred CCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE-------eCCC
Q 001386 346 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-------YSKH 418 (1088)
Q Consensus 346 g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~-------~~dg 418 (1088)
|.+++.++..| +..+++.+|+..+ +..|-+-|+...|+|||+.+|.. ...+
T Consensus 50 GD~IiFt~~Dd--lWe~slk~g~~~r--------------------itS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~ta 107 (668)
T COG4946 50 GDRIIFTCCDD--LWEYSLKDGKPLR--------------------ITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTA 107 (668)
T ss_pred CcEEEEEechH--HHHhhhccCCeeE--------------------EecccceeccccCCCCCcEEEEEEEEecCCCccc
Confidence 55677777644 5555667776554 55688889999999999999983 2234
Q ss_pred EEEEEEccCCCcccceeEeccCCCCEEEE-EecCCCCcEEEEEEeCCCcEEEE----eCCC-CceeEEeccCCccEEEEe
Q 001386 419 IVQLYAYHGGSDARQQLEIDAHVGNVNDL-AFSAPCKQISVITCGDDKTIKVW----DAVT-GSRTYSFEGHGAPVYSLC 492 (1088)
Q Consensus 419 ~i~vwd~~~~~~~~~~~~~~~h~~~v~~~-~~s~d~~~l~l~s~s~d~~i~vw----d~~~-~~~~~~~~~~~~~v~~~~ 492 (1088)
.+.+.+.+.|+..+. ++-| ...+.+ -|.|||+ ++++...-.-..-| -+.. |.....+ .-++.+.+.
T Consensus 108 Dly~v~~e~Ge~kRi--TyfG--r~fT~VaG~~~dg~--iiV~TD~~tPF~q~~~lYkv~~dg~~~e~L--nlGpathiv 179 (668)
T COG4946 108 DLYVVPSEDGEAKRI--TYFG--RRFTRVAGWIPDGE--IIVSTDFHTPFSQWTELYKVNVDGIKTEPL--NLGPATHIV 179 (668)
T ss_pred cEEEEeCCCCcEEEE--EEec--cccceeeccCCCCC--EEEEeccCCCcccceeeeEEccCCceeeec--cCCceeeEE
Confidence 588888898875442 2223 344444 5999998 66665433222222 1111 1101111 112333332
Q ss_pred eeeeCCceEEEEEecCCe------------EEEEECCCCC-ceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001386 493 PHAKENIHFIFSISVDGK------------IKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1088)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~------------i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 559 (1088)
+ .|| .++.|-..-. =++|--..+. .-..+..-.+.|.+-..-.+.-++++ +-+|-+.++-
T Consensus 180 ~---~dg-~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFls---D~eG~GnlYS 252 (668)
T COG4946 180 I---KDG-IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLS---DHEGVGNLYS 252 (668)
T ss_pred E---eCC-EEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEe---cccCccceEE
Confidence 2 133 2222211111 1223211111 11111111122222222222222222 3355666777
Q ss_pred EeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCC------CCCC----CCceEE
Q 001386 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG------GGLP----ENPRIC 629 (1088)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~------~~~~----~v~~v~ 629 (1088)
-|+....+ +...... .-.+-..+.||+.++.. ..|.|.+||..+.+... +... ...+ +..-+.
T Consensus 253 vdldGkDl-rrHTnFt----dYY~R~~nsDGkrIvFq-~~GdIylydP~td~lek-ldI~lpl~rk~k~~k~~~pskyle 325 (668)
T COG4946 253 VDLDGKDL-RRHTNFT----DYYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEK-LDIGLPLDRKKKQPKFVNPSKYLE 325 (668)
T ss_pred eccCCchh-hhcCCch----hccccccCCCCcEEEEe-cCCcEEEeCCCcCccee-eecCCccccccccccccCHHHhhh
Confidence 77654332 2211111 12233356788877653 45789999988755332 2211 0000 000111
Q ss_pred -Eec-CCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccC
Q 001386 630 -FNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1088)
Q Consensus 630 -~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 707 (1088)
|++ +|.+++..+. |...+.+...+..++
T Consensus 326 dfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq------------------------------------------------- 355 (668)
T COG4946 326 DFAVVNGDYIALVSR-GKAFIMRPWDGYSIQ------------------------------------------------- 355 (668)
T ss_pred hhccCCCcEEEEEec-CcEEEECCCCCeeEE-------------------------------------------------
Confidence 333 5677777665 455554433221111
Q ss_pred ccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEecccc-ceEEEEccCCCCCCCCCCCCcccCCCCCCc
Q 001386 708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG-VHLMWRWPRNDLTLSTEVPPRLYQPRHGPQ 786 (1088)
Q Consensus 708 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1088)
.++...|.-..+..+++.++.+..|| .+-+++...+..
T Consensus 356 -----------------------v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~------------------ 394 (668)
T COG4946 356 -----------------------VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV------------------ 394 (668)
T ss_pred -----------------------cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE------------------
Confidence 01334455566666666778888887 777777654431
Q ss_pred ceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC---
Q 001386 787 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--- 862 (1088)
Q Consensus 787 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg--- 862 (1088)
... . ..-+.|.++..++||++++++. ...+.+.|+.++.....-+...+-|+.++|+| +++++|.+--+|
T Consensus 395 kr~-e----~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~t 468 (668)
T COG4946 395 KRI-E----KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYT 468 (668)
T ss_pred EEe-e----CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceee
Confidence 110 0 2456799999999999999997 56799999999987766666778899999999 899999988777
Q ss_pred -eEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeC
Q 001386 863 -TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 902 (1088)
Q Consensus 863 -~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~ 902 (1088)
.|+++|+.+++....-. ..+.=.+-+|.||+++|..-+.
T Consensus 469 q~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 469 QSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred eeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEec
Confidence 78999999888654333 2233356789999999887653
No 213
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.62 E-value=1.1e-13 Score=144.00 Aligned_cols=169 Identities=11% Similarity=0.154 Sum_probs=126.5
Q ss_pred ecCCCEEEEEe-CCcEEEEEcCCceeEEEec----CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC----------
Q 001386 807 SKNDAYLFSAS-GGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS---------- 871 (1088)
Q Consensus 807 s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~---------- 871 (1088)
.|++--+.++- -|.+.+.|....+..+.+. .....++|+.|-|.+...++++-.+|.+++||..-
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 45666666665 6888888876522211111 12368999999997677888888999999997531
Q ss_pred ----ce--------------eeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCC
Q 001386 872 ----SE--------------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP 933 (1088)
Q Consensus 872 ----~~--------------~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 933 (1088)
+. ++..+.--.+.|...+|||||++||+.|.||.+||+|..+.+ .+....... +
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-----Llg~mkSYF---G 333 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-----LLGVMKSYF---G 333 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH-----HHHHHHhhc---c
Confidence 11 122222234578889999999999999999999999999833 333333333 3
Q ss_pred CeEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEee
Q 001386 934 SETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC 984 (1088)
Q Consensus 934 ~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~ 984 (1088)
...|++|||||++|++ |.|.-|.||.+...+.+.. -.+|.+.|..|+|.|
T Consensus 334 GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR-GqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 334 GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR-GQGHKSWVSVVAFDP 384 (636)
T ss_pred ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe-ccccccceeeEeecc
Confidence 7899999999999999 6788999999999998887 668999999999987
No 214
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.61 E-value=9.5e-12 Score=140.70 Aligned_cols=277 Identities=15% Similarity=0.117 Sum_probs=188.7
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCC--CCCeEEEEECCCCCEEEE
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP--GVSVNRVVWSPDGSLLGV 413 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h--~~~V~~l~~s~dg~~las 413 (1088)
.+.+.++-. +++|| | ....|.+||+.++..+.... ....+..| ++.+.+ .+.++++
T Consensus 9 ~l~~~~~~~--~~lla-g-~gp~i~~yd~~s~~li~~~~-------------~~~~~~~H~~e~~~~l-----~~~~~v~ 66 (967)
T KOG0974|consen 9 PLNLPQLVS--DYLLA-G-SGPEILVYDLSSGCLIRHLI-------------QSKILEVHRGEGKVKL-----LSGKIVT 66 (967)
T ss_pred cccchhhcc--ceeee-c-CCCceEEeeCCchhHhhhhh-------------hhccccccccccccee-----ccceEEE
Confidence 444445444 44444 3 33679999999998775321 11123344 111111 2344555
Q ss_pred EeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccE--EEE
Q 001386 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV--YSL 491 (1088)
Q Consensus 414 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v--~~~ 491 (1088)
+..-+.+..=+..-.. +..-...|....+.-+.+ .++.+..++.+-+||...+.....+....... .++
T Consensus 67 ~~~~~~v~~~~~~~~~-------~~~~s~wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~ 137 (967)
T KOG0974|consen 67 CAKSDEVYVKEASNQI-------IERFSDWIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSL 137 (967)
T ss_pred EEeecceeecchhhhh-------hhhccccccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEE
Confidence 5433333332222111 112223344455555666 57777778899999988877766554322211 122
Q ss_pred eeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeE-E
Q 001386 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-T 570 (1088)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~ 570 (1088)
.+-.+.+.-++++|+.-+.|.+|+....+....+.+|.+.|.++.++.||+++++++. +..+++|++.+++... .
T Consensus 138 ~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~~~~ 213 (967)
T KOG0974|consen 138 IIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVLGCT 213 (967)
T ss_pred EEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEec----CcceeeeecccccccCcc
Confidence 2223445578999999999999998855555568899999999999999999999987 4559999999988776 5
Q ss_pred EeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEe
Q 001386 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1088)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 650 (1088)
.-+|. ..+..++|.|+ .++++++|-+.++|+.. ++.+..+..|... .+..++..++...+++++.|+.+++|+
T Consensus 214 ~fgHs---aRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~-~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 214 GFGHS---ARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGK-GIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred ccccc---ceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhc-ceeEEEEcCCceEEEeeccCcchhhhh
Confidence 55666 89999999997 99999999999999764 4555577766543 588999999999999999999999999
Q ss_pred CCCC
Q 001386 651 TPES 654 (1088)
Q Consensus 651 ~~~~ 654 (1088)
....
T Consensus 287 l~~r 290 (967)
T KOG0974|consen 287 LNGR 290 (967)
T ss_pred hhcc
Confidence 8754
No 215
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=2e-12 Score=126.35 Aligned_cols=241 Identities=13% Similarity=0.175 Sum_probs=170.9
Q ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeC-----CCcEEEEeC
Q 001386 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----DKTIKVWDA 472 (1088)
Q Consensus 398 ~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~-----d~~i~vwd~ 472 (1088)
...+++|+.|...+++|..+| .+||+.+--+... .-..+.+.+.-+...--.+.+.|+-|+. -..|.|||=
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence 445599999999999998888 8999987532211 1112222222222222334333343332 247999996
Q ss_pred CCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECC-CCCceEEecCCC--CceEEEEEccCCCEEEEEee
Q 001386 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPG--LGCTRMAYSANGRRLFSCGT 549 (1088)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~--~~v~~~~~s~~g~~l~~~~~ 549 (1088)
...+++.++. ...+|.++.+.. + .|+. -..+.|.+|.+. +.+....+.... ....+++-+.+...||.-+
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r--~--riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg- 155 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRR--D--RIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPG- 155 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcC--C--eEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCC-
Confidence 6777887776 678899998843 2 3443 356789999987 445555444333 2333343333444455433
Q ss_pred CCCCceeEEEEeCCCCce--eEEEeccccccccEEEEEEeCCCCEEEEEeCCCc-EEEEEcCCCeeeEEEeCCCCCCCCc
Q 001386 550 SKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENP 626 (1088)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~ 626 (1088)
...|.|++-|+..-+. ...+..|. ..|.|++.+.+|..++++|..|+ |||||..+|..+..+........|.
T Consensus 156 --~k~GqvQi~dL~~~~~~~p~~I~AH~---s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 156 --FKTGQVQIVDLASTKPNAPSIINAHD---SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred --CccceEEEEEhhhcCcCCceEEEccc---CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 3357799999876554 46777777 99999999999999999999998 7999999999999998776667899
Q ss_pred eEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 001386 627 RICFNKNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
+++|||+..+||++++.|++.|+.+...
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 9999999999999999999999998854
No 216
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=1.1e-15 Score=166.77 Aligned_cols=343 Identities=18% Similarity=0.169 Sum_probs=219.3
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCCCCCcccccccCCCCCCCCcCCCCCCCCCCCCCCCCCCccccCCCCCCCcccccccc
Q 001386 171 RLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVAL 250 (1088)
Q Consensus 171 rL~~ll~qa~~~q~~~~~~~~~~~~~~~l~~d~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1088)
-|..|+.|++++|+.+|++|.++++++|||.+|.|++|+.-....++=++..-. ++..+.+.++..+.
T Consensus 1014 sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~~~ap~N~t~Rl~~-----------rel~~~y~gV~g~~- 1081 (1516)
T KOG1832|consen 1014 SLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRLLEAPLNMTGRLGT-----------RELQSFYSGVHGNR- 1081 (1516)
T ss_pred cHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHHhhcchhhhhcccc-----------hhhcCcccccccCc-
Confidence 399999999999999999999999999999999999854332222211100000 00001111110000
Q ss_pred CCCCCCCccccccCCCCCCCCcCCccccccccccccceecCccCCCcCCCCCCCchhhhcccccCCcccCCCchhheeec
Q 001386 251 SLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTL 330 (1088)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~fsP~~s~~~~~~~~~~~~~~~~~p~~~~~~l 330 (1088)
......+.|++ ..+++
T Consensus 1082 -------------------~dr~~IFSRFr---------------------------------------------~w~~f 1097 (1516)
T KOG1832|consen 1082 -------------------RDRQFIFSRFR---------------------------------------------SWRSF 1097 (1516)
T ss_pred -------------------ccchhhHhhcc---------------------------------------------cchhh
Confidence 00011111111 12556
Q ss_pred ccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCE
Q 001386 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1088)
Q Consensus 331 ~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~ 410 (1088)
..|...-+|++||-+.+ .|++|+..|.|+++++.+|..... ...|+.+|+.+.=|.||..
T Consensus 1098 rd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~SavT~vePs~dgs~ 1157 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQSAVTLVEPSVDGST 1157 (1516)
T ss_pred hccccceeeEEeecCCc-eEEeeeccceEEEEEccCcccccc-------------------ccccccccccccccCCcce
Confidence 78888999999999888 699999999999999999987765 5679999999999999998
Q ss_pred EEEEeCC--CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe-cc---C
Q 001386 411 LGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EG---H 484 (1088)
Q Consensus 411 las~~~d--g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~-~~---~ 484 (1088)
+.+.+.- ....+|++.+- ....+.+. .-.++.|+...+. -+.|..-..+.+||++|+..+.++ .+ .
T Consensus 1158 ~Ltsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~--r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~ 1229 (1516)
T KOG1832|consen 1158 QLTSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF--RALGTEADDALLYDVQTCSPLQTYLTDTVTS 1229 (1516)
T ss_pred eeeeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH--HHhcccccceEEEecccCcHHHHhcCcchhh
Confidence 8776543 35789998752 22222232 3457888876553 233444456889999999887663 22 1
Q ss_pred CccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC
Q 001386 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1088)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 564 (1088)
...-+...|+| +..+++ .|| .+||++..+.+..+..-. ....-.|+|.|..++..+ .|||++|
T Consensus 1230 ~y~~n~a~FsP--~D~LIl---ndG--vLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIINS---------EIwD~RT 1292 (1516)
T KOG1832|consen 1230 SYSNNLAHFSP--CDTLIL---NDG--VLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIINS---------EIWDMRT 1292 (1516)
T ss_pred hhhccccccCC--CcceEe---eCc--eeeeeccHHHHhhhhhhe-ecccccccCCCceEEeec---------hhhhhHH
Confidence 22224555644 334444 244 379998876665554333 112235999999998864 5899999
Q ss_pred CceeEEEeccccccccEEEEEEeCCCCEEEEEe--CC---------------CcEEEEEcCCCeeeEEEeCCCCCCCCce
Q 001386 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DD---------------HVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1088)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1088)
.+.++...... -..+.|+..|+.++..- .| ...+-++..+.+.+.++.... .+..
T Consensus 1293 F~lLh~VP~Ld-----qc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R---~~~D 1364 (1516)
T KOG1832|consen 1293 FKLLHSVPSLD-----QCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDR---CLLD 1364 (1516)
T ss_pred HHHHhcCcccc-----ceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeeccc---chhh
Confidence 98887776544 45677888887665532 00 124455666666666666543 2566
Q ss_pred EEEecCCCEEEEEeC
Q 001386 628 ICFNKNGTLLAVIAN 642 (1088)
Q Consensus 628 v~~s~~~~~l~~~~~ 642 (1088)
++-+|...++++...
T Consensus 1365 lct~~~D~~l~vIe~ 1379 (1516)
T KOG1832|consen 1365 LCTEPTDSFLGVIEM 1379 (1516)
T ss_pred hhcCCccceEEEEec
Confidence 677776666665543
No 217
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=4.5e-13 Score=132.66 Aligned_cols=260 Identities=12% Similarity=0.114 Sum_probs=165.3
Q ss_pred cccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEE
Q 001386 734 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYL 813 (1088)
Q Consensus 734 ~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 813 (1088)
...|++++|-|.+..-++.+.-+.|.+|..+..... ...++ ..+..+... ++..+| ..|+++.+.+||..+
T Consensus 140 QrnvtclawRPlsaselavgCr~gIciW~~s~tln~---~r~~~---~~s~~~~qv--l~~pgh-~pVtsmqwn~dgt~l 210 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNA---NRNIR---MMSTHHLQV--LQDPGH-NPVTSMQWNEDGTIL 210 (445)
T ss_pred hcceeEEEeccCCcceeeeeecceeEEEEcCccccc---ccccc---cccccchhh--eeCCCC-ceeeEEEEcCCCCEE
Confidence 345777777777666666666677888876544321 11111 011111111 222234 789999999999999
Q ss_pred EEEe--CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEEC
Q 001386 814 FSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 891 (1088)
Q Consensus 814 ~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s 891 (1088)
++++ +..|.|||..++..+.-.....+.++-+.||| |+.+|.+++-|+..++|+.....-.....--.+.|....|+
T Consensus 211 ~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWs 289 (445)
T KOG2139|consen 211 VTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWS 289 (445)
T ss_pred eecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceeeeeec
Confidence 9998 67899999999988766655567888999999 89999999999999999554332222333345589999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCcee----------eeeee------ecCCCCccCCCCeEEEEEcCCCCEEEEEeCC--
Q 001386 892 DALNILVSSGGDAQIFVWDVDGWGIQ----------TCRSL------QTPDGVMTLAPSETHIQFHKDQTRFLLVHET-- 953 (1088)
Q Consensus 892 ~dg~~las~s~Dg~i~iwd~~~~~~~----------~~~~~------~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~-- 953 (1088)
|+|++|..+.. |.-++|.+...+.. ....+ ....+.....+++.+++|.|.|.+||+...+
T Consensus 290 pcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 290 PCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred CCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 99998765443 33456655432110 00011 1111211222578999999999999995332
Q ss_pred -------eEEEEEcCcceeeeeeecCC--CcCEEEEEEee---CCCEEEEEeCCCcEEEEEcC
Q 001386 954 -------HLAIYEAEELTCLKQWFPIS--SVPISQATFSC---DCRMVFTSFVDGTLSIHEAS 1004 (1088)
Q Consensus 954 -------~i~vwd~~~~~~~~~~~~~h--~~~v~~l~fs~---dg~~l~s~s~dg~v~vwd~~ 1004 (1088)
.|.+||....-.+...+.+- ......++|.| +|.+|..+=..|.+.-|++.
T Consensus 369 ~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 369 FVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred hhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 36778876554443332221 23355667776 66777777677777777654
No 218
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=6.3e-13 Score=131.67 Aligned_cols=288 Identities=16% Similarity=0.164 Sum_probs=188.6
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-CCCEEEEE
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGVA 414 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~-dg~~las~ 414 (1088)
.+..++|++--- -+|++..|-.|+|||-.... ... +-......|+|++|-| .++-|++|
T Consensus 100 dlr~~aWhqH~~-~fava~nddvVriy~ksst~-pt~------------------Lks~sQrnvtclawRPlsaselavg 159 (445)
T KOG2139|consen 100 DLRGVAWHQHII-AFAVATNDDVVRIYDKSSTC-PTK------------------LKSVSQRNVTCLAWRPLSASELAVG 159 (445)
T ss_pred ceeeEeechhhh-hhhhhccCcEEEEeccCCCC-Cce------------------ecchhhcceeEEEeccCCcceeeee
Confidence 677888888443 46788899999999987622 211 0122457899999999 45678888
Q ss_pred eCCCEEEEEEccCCCcc-----------cceeEeccCCCCEEEEEecCCCCcEEEEEEeC-CCcEEEEeCCCCceeEEec
Q 001386 415 YSKHIVQLYAYHGGSDA-----------RQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFE 482 (1088)
Q Consensus 415 ~~dg~i~vwd~~~~~~~-----------~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~-d~~i~vwd~~~~~~~~~~~ 482 (1088)
+..| |.+|........ .++....+| .+|+++.|.+||. .+++++. |..|.|||+.+|.++.-..
T Consensus 160 Cr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~~ 235 (445)
T KOG2139|consen 160 CRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLIP 235 (445)
T ss_pred ecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccccc
Confidence 8777 999987532111 112233455 6899999999999 6777775 5689999999998876554
Q ss_pred cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEe-
Q 001386 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN- 561 (1088)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd- 561 (1088)
...+.+.-+.| ++|+.+|++++-|+..++|+....-.........+.|...+|+|+|++|+..... +..++-..
T Consensus 236 ~glgg~slLkw--SPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg---sp~lysl~f 310 (445)
T KOG2139|consen 236 KGLGGFSLLKW--SPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG---SPRLYSLTF 310 (445)
T ss_pred cCCCceeeEEE--cCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC---CceEEEEee
Confidence 45677888888 4577899999999999999544332222222333489999999999998766532 22232211
Q ss_pred -CCCCcee-----------------EEEeccccccccEEEEEEeCCCCEEEEEeCC--------CcEEEEEcCCCeeeEE
Q 001386 562 -ESEGAIK-----------------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDD--------HVIKIWDMNKVQLLTT 615 (1088)
Q Consensus 562 -~~~~~~~-----------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d--------g~i~iwd~~~~~~~~~ 615 (1088)
-+.+... ....+...-.+.+.+++|.|.|.++++.-.. +.|.+||.+.--.+..
T Consensus 311 ~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vel 390 (445)
T KOG2139|consen 311 DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVEL 390 (445)
T ss_pred cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEE
Confidence 1111100 0111111113678899999999999986533 3466788765443333
Q ss_pred Ee-CCCCCCCCceEEEec---CCCEEEEEeCCCcEEEEeCC
Q 001386 616 ID-AGGGLPENPRICFNK---NGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 616 ~~-~~~~~~~v~~v~~s~---~~~~l~~~~~dg~i~iwd~~ 652 (1088)
.. +......-..++|+| ++.+|.++-..|.+.-|++.
T Consensus 391 s~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 391 SYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 21 111111235677777 67788888888888777654
No 219
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.60 E-value=1.5e-13 Score=134.08 Aligned_cols=246 Identities=16% Similarity=0.215 Sum_probs=176.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCC-
Q 001386 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV- 473 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~- 473 (1088)
-..+|+|.||++|+..+|++-.+..|.||............++..|...|+.+.|+|.++ .|++++.|..-++|...
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence 347899999999999999999999999999998887777889999999999999999998 69999999999999983
Q ss_pred CC--ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCC
Q 001386 474 TG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 474 ~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
.+ ++...+..+....+++.|+|.. +.+++|+.-+.|.+|-++..+.- -++
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdW---------------------WVs----- 138 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDW---------------------WVS----- 138 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccce---------------------ehh-----
Confidence 33 3344556688889999996644 58999998888888755432211 000
Q ss_pred CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcC------------------CCeee
Q 001386 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN------------------KVQLL 613 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~------------------~~~~~ 613 (1088)
.+.-+.+ +..|.++.|+|++-.+++|+.|+..|++..- -|+++
T Consensus 139 ----------------KhikkPi---rStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm 199 (361)
T KOG1523|consen 139 ----------------KHIKKPI---RSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLM 199 (361)
T ss_pred ----------------hhhCCcc---ccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHH
Confidence 0000111 1456777777777667777777777776532 12333
Q ss_pred EEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCC-cccccccccCcceeeeecCCCcceeccccCCceeec
Q 001386 614 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN-SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 691 (1088)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~ 691 (1088)
..+... ...+..+.|+|+|..|+-.+.|.++.+-|..... .+.......-+..++.+-......+.+.+-+.+.|.
T Consensus 200 ~E~~~~--ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P~lf~ 276 (361)
T KOG1523|consen 200 SEASSS--GGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAGYDCGPVLFV 276 (361)
T ss_pred HhhccC--CCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecCCCCCceEEE
Confidence 333222 2358899999999999999999999999888664 344444444566666666666666655554545543
No 220
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.60 E-value=4.3e-11 Score=135.52 Aligned_cols=200 Identities=15% Similarity=0.169 Sum_probs=151.8
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~ 415 (1088)
.|....+.-+.+ .++.++.+..+.|||...+..+.... |.. +. --....-+.++++.-++++|+
T Consensus 89 wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~--------~~e---r~----~l~~~~~~g~s~~~~~i~~gs 152 (967)
T KOG0974|consen 89 WIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQ--------SDE---RC----TLYSSLIIGDSAEELYIASGS 152 (967)
T ss_pred cccccchhhhcc-eEEEEEcCceEEEEecccCceehhcC--------CCc---eE----EEEeEEEEeccCcEEEEEecc
Confidence 344455555666 57788888999999998876654211 000 00 001223355678888999999
Q ss_pred CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE-EeccCCccEEEEeee
Q 001386 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYSLCPH 494 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~ 494 (1088)
.-+.|.+|+....+ .+. .+.+|.+.|.++.|+.||+ ++++.|+|.++++|++++++... ..-+|...|..+++.
T Consensus 153 v~~~iivW~~~~dn--~p~-~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~ 227 (967)
T KOG0974|consen 153 VFGEIIVWKPHEDN--KPI-RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFL 227 (967)
T ss_pred ccccEEEEeccccC--Ccc-eecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEEEEec
Confidence 99999999998332 111 5889999999999999999 89999999999999999998776 777899999999996
Q ss_pred eeCCceEEEEEecCCeEEEEECCCCCceEEecCC-CCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001386 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1088)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1088)
++ .+++++.|-+.++|+.+..+.. .+..| ...+..++..++...+++++. ++.+++|+....
T Consensus 228 ~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 228 PN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNGR 290 (967)
T ss_pred cc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhcc
Confidence 54 8999999999999977655544 44444 447899999998888888876 455999987643
No 221
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.5e-14 Score=148.71 Aligned_cols=296 Identities=14% Similarity=0.139 Sum_probs=223.1
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
|.+|.+.|..+.|+..|..|++|+.|..|.+||+.+++....+ ..+|...|....|.|.....-+++++.||.+++=.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f--~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF--ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc--ccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 7789999999999999999999999999999999998755432 45899999988898865444699999999999876
Q ss_pred CC-CCcee--EEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEe---cCCCC---ceEEEEEccCCC
Q 001386 472 AV-TGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY---DAPGL---GCTRMAYSANGR 542 (1088)
Q Consensus 472 ~~-~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~---~v~~~~~s~~g~ 542 (1088)
+. +|.+. ..+..|.++|.-++..|. .-..|.+++.|+.+.-.|++.......+ ..+.. ....++..|...
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~-sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPD-SPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eccccceecceecccccCccceeeecCC-CCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 54 44443 456679999999988654 3357999999999999999876543322 12222 457888899776
Q ss_pred -EEEEEeeCCCCceeEEEEeCCCCce------eEEEeccc---cccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCC--C
Q 001386 543 -RLFSCGTSKEGESFLVEWNESEGAI------KRTYQGLQ---LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--V 610 (1088)
Q Consensus 543 -~l~~~~~~~~~~~~i~iwd~~~~~~------~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~ 610 (1088)
.+++++. +..+++||.+.-.. +..+..+. ...-.|++++|+.++.-++++..|-.|+++.-.- |
T Consensus 295 ~~faVgG~----dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 295 NEFAVGGS----DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred cccccCCh----hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 5566554 55688898764221 12222211 1124689999998888888888999999995432 2
Q ss_pred ----------eeeEE-EeCCCCCCCCceEEE-ecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcc
Q 001386 611 ----------QLLTT-IDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 678 (1088)
Q Consensus 611 ----------~~~~~-~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 678 (1088)
..+.. +++|.....|..+-| -|...++++|++=|.|.||+-.+++.++.+.+...-|.|+.-+
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpH----- 445 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPH----- 445 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCC-----
Confidence 22222 566665556777775 5788999999999999999999999999999888778877766
Q ss_pred eeccccCCceeecCCCCCCCCcccccccCccceecccc
Q 001386 679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1088)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 716 (1088)
|.-..|++++-|..|+||...
T Consensus 446 -----------------P~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 446 -----------------PHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred -----------------CCCchhhccCCccceeeecCC
Confidence 456678999999999999863
No 222
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.60 E-value=1.1e-13 Score=153.90 Aligned_cols=253 Identities=17% Similarity=0.199 Sum_probs=183.6
Q ss_pred CCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCC--EEE
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS--LLG 412 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~--~la 412 (1088)
.+|+|++|+|....++|.|..+|.|.+||+..+....... -......|..+|+.+.|-.+-. -++
T Consensus 243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~-------------ls~~~~sh~~~v~~vvW~~~~~~~~f~ 309 (555)
T KOG1587|consen 243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG-------------LSALEVSHSEPVTAVVWLQNEHNTEFF 309 (555)
T ss_pred CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc-------------cccccccCCcCeEEEEEeccCCCCceE
Confidence 3999999999888899999999999999999887531100 0112456999999999987544 499
Q ss_pred EEeCCCEEEEEEccCCCcccceeEe--c-------cCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe---CCCCc----
Q 001386 413 VAYSKHIVQLYAYHGGSDARQQLEI--D-------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD---AVTGS---- 476 (1088)
Q Consensus 413 s~~~dg~i~vwd~~~~~~~~~~~~~--~-------~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd---~~~~~---- 476 (1088)
+++.||.|..|+++.-........+ . .-...+++++|.+...+ .++.|+.+|.|.-=+ ...+.
T Consensus 310 s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~g~~~~~~~~~ 388 (555)
T KOG1587|consen 310 SLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRKGYTPAPEVSY 388 (555)
T ss_pred EEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEeccCCcccccccc
Confidence 9999999999988753321111011 1 11236899999988776 688899999887733 22222
Q ss_pred -eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECC-CCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCc
Q 001386 477 -RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1088)
Q Consensus 477 -~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~ 554 (1088)
.+..+..|.++|+++.++|-.. ..+++++ |-+|++|.-. .......+..+...+++++|||-.-.++++. +++
T Consensus 389 ~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~---d~~ 463 (555)
T KOG1587|consen 389 KGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV---DGD 463 (555)
T ss_pred cccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE---cCC
Confidence 2335567889999998866543 2344444 9999999887 5566666777777799999999887776665 457
Q ss_pred eeEEEEeCCCCc--eeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 001386 555 SFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1088)
Q Consensus 555 ~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 609 (1088)
+.+.+||+.... .+.+..... ...+.+.|++.|+.+++|...|++.+|++..
T Consensus 464 G~l~iWDLl~~~~~Pv~s~~~~~---~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 464 GNLDIWDLLQDDEEPVLSQKVCS---PALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CceehhhhhccccCCcccccccc---cccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 789999987543 233332222 5677888999999999999999999999864
No 223
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.59 E-value=1.2e-09 Score=132.33 Aligned_cols=514 Identities=12% Similarity=0.124 Sum_probs=284.1
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEE----EccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEE
Q 001386 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLY----AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~las~~~dg~i~vw----d~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vw 470 (1088)
..+.|.++.+-+|...++.+..+|.|.+. +..+.. ......-...|.+++||||+. .|+..+.++++.+.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~----~E~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~m 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE----IEIVGSVDSGILAASWSPDEE--LLALVTGEGNLLLM 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce----eEEEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEEE
Confidence 55789999999999999999999999999 444432 112334567899999999999 66666668888877
Q ss_pred eCCCCceeEEeccCCcc-----EEEEeeeeeCCceEEEEEecCCeE-E-EEECCCC-CceEEecCCCCceEEEEEccCCC
Q 001386 471 DAVTGSRTYSFEGHGAP-----VYSLCPHAKENIHFIFSISVDGKI-K-AWLYDSL-GARVDYDAPGLGCTRMAYSANGR 542 (1088)
Q Consensus 471 d~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~l~s~~~dg~i-~-iwd~~~~-~~~~~~~~~~~~v~~~~~s~~g~ 542 (1088)
+ .+-..+....-+... -.++.|-.. ..++ =|+..+.. + .=|.... .....+. ....-..++|-.||.
T Consensus 148 t-~~fd~i~E~~l~~~~~~~~~~VsVGWGkK-eTQF--~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~ 222 (928)
T PF04762_consen 148 T-RDFDPISEVPLDSDDFGESKHVSVGWGKK-ETQF--HGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGE 222 (928)
T ss_pred e-ccceEEEEeecCccccCCCceeeeccCcc-cCcc--CcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCc
Confidence 5 555555444332211 111222100 0000 00000000 0 0000000 0001111 233556799999999
Q ss_pred EEEEEeeCCC-C-ceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeC---CCcEEEEEcCCCeeeEEEe
Q 001386 543 RLFSCGTSKE-G-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQLLTTID 617 (1088)
Q Consensus 543 ~l~~~~~~~~-~-~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---dg~i~iwd~~~~~~~~~~~ 617 (1088)
++|+.+.+.. + ...+++|+-. |.+..+-..-. +--.+++|-|.|+.|++... ...|.+|.. +|-.-..+.
T Consensus 223 yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~---gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~ 297 (928)
T PF04762_consen 223 YFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVD---GLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFT 297 (928)
T ss_pred EEEEEEEEcCCCceeEEEEECCC-ceEEeccccCC---CccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEe
Confidence 9999886333 3 5889999965 66554444323 44467899999999998653 456777774 444444444
Q ss_pred CC--CCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCC
Q 001386 618 AG--GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 695 (1088)
Q Consensus 618 ~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 695 (1088)
.. .....|..+.|++|+..||+...|. |.+|-..+....-...
T Consensus 298 l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqe---------------------------------- 342 (928)
T PF04762_consen 298 LRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQE---------------------------------- 342 (928)
T ss_pred cCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEE----------------------------------
Confidence 33 2334689999999999999988664 9999877553211100
Q ss_pred CCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCc-eEEEeccccceEEEEccCCCCCCCCCC
Q 001386 696 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLTLSTEV 774 (1088)
Q Consensus 696 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~~~dg~v~iw~~~~~~~~~~~~~ 774 (1088)
+.++ ....+..+.|+|... .|...+.+|.+..+++.
T Consensus 343 ------------------------------i~~~---~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~---------- 379 (928)
T PF04762_consen 343 ------------------------------IRFS---SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA---------- 379 (928)
T ss_pred ------------------------------EEcc---CCCCCCceEECCCCCCEEEEEecCCcEEEEEEE----------
Confidence 0000 011122245555332 34555555666555532
Q ss_pred CCcccCCCCCCcceeeccCCCCCCCCeeEEEEec-CCCEEEEEeCCcEEEEEcCCceeE-----EEecCCCCCeEEEEEc
Q 001386 775 PPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-NDAYLFSASGGVISLYIVMTFKTI-----LTIMPPSPTATSLAFN 848 (1088)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~i~~l~~s 848 (1088)
|++..+. ..+| |...+++.++.++.+-.+...-.. ..+. -...|.+++|+
T Consensus 380 ----~~v~~s~-------------------~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~ 435 (928)
T PF04762_consen 380 ----WDVSRSP-------------------GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFS 435 (928)
T ss_pred ----EEEEecC-------------------CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEe
Confidence 1111110 0011 223344444556777666543211 2222 34689999999
Q ss_pred CCCCcEEEEEeCCCeEEEEEcCCcee--------eeeec----------cccCCeeEEEECCCCCEEEEEeCC---CcEE
Q 001386 849 PHDNNVIAIGMDDSTILIYNARSSEV--------ISKLE----------GHSKRVTGLVFSDALNILVSSGGD---AQIF 907 (1088)
Q Consensus 849 p~d~~~lasg~~dg~i~lwd~~~~~~--------~~~l~----------~h~~~V~~l~~s~dg~~las~s~D---g~i~ 907 (1088)
+ ++..+|+-..||.|.+|....... ...+. .-...+..++|..+...++....+ ..+.
T Consensus 436 ~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 514 (928)
T PF04762_consen 436 P-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIV 514 (928)
T ss_pred C-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEE
Confidence 9 666688899999999998544211 11111 123457888998887776666554 5688
Q ss_pred EEEcCCCce-eeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeC
Q 001386 908 VWDVDGWGI-QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCD 985 (1088)
Q Consensus 908 iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~d 985 (1088)
++++...+. .......... ..+..+...++...++. ..+|++...+..........++. ......++...+
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~-~c~~~~~~~~~~ 587 (928)
T PF04762_consen 515 LVDIDDSENSASVESSTEVD------GVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQ-PCPWMEVCQING 587 (928)
T ss_pred EEEeccCCCceeEEEEeccC------ceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCC-CCcEEEEEEECC
Confidence 888854321 1111111111 13455555666553443 77888886665544322211111 222333333333
Q ss_pred CC---EEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001386 986 CR---MVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1057 (1088)
Q Consensus 986 g~---~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~ 1057 (1088)
.. .++.-+..|.+++ ++..++.- .++++.++ .+|+.+.....+++..+.
T Consensus 588 ~~~~~~~~GLs~~~~Ly~----n~~~la~~----------------~tSF~v~~---~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 588 SEDKRVLFGLSSNGRLYA----NSRLLASN----------------CTSFAVTD---SFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred ccceeEEEEECCCCEEEE----CCEEEecC----------------CceEEEEc---CEEEEEecCceEEEEECc
Confidence 33 3444444455543 33333211 22344443 677777788999999998
No 224
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1.3e-12 Score=147.50 Aligned_cols=238 Identities=11% Similarity=0.128 Sum_probs=157.6
Q ss_pred CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeC---CCEEEEEEccCCCcccc
Q 001386 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ 433 (1088)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~---dg~i~vwd~~~~~~~~~ 433 (1088)
..|.+||...+.... +..+...+.+.+|||||+.||..+. +..|.+||+.+|+...
T Consensus 179 ~~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~- 237 (429)
T PRK03629 179 YELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ- 237 (429)
T ss_pred eeEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-
Confidence 368888887654332 3346678999999999999997653 3579999998876322
Q ss_pred eeEeccCCCCEEEEEecCCCCcEEEEEEeCCC--cEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecC-Ce
Q 001386 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GK 510 (1088)
Q Consensus 434 ~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~ 510 (1088)
+....+.+...+|+|||+.+ +++.+.++ .|.+||+.+++... +..+...+....| ++||+.|+..+.+ |.
T Consensus 238 ---l~~~~~~~~~~~~SPDG~~L-a~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~w--SPDG~~I~f~s~~~g~ 310 (429)
T PRK03629 238 ---VASFPRHNGAPAFSPDGSKL-AFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTW--FPDSQNLAYTSDQAGR 310 (429)
T ss_pred ---ccCCCCCcCCeEECCCCCEE-EEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEE--CCCCCEEEEEeCCCCC
Confidence 22233345578999999952 33334444 58899998887654 4334455666777 5577777766654 44
Q ss_pred EEEE--ECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeC
Q 001386 511 IKAW--LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1088)
Q Consensus 511 i~iw--d~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1088)
..+| |+.++... .+...........|+|||++++..+.. .+...|++||+.+++.. .+... .......|+|
T Consensus 311 ~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~g~~~-~Lt~~----~~~~~p~~Sp 383 (429)
T PRK03629 311 PQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQ-VLTDT----FLDETPSIAP 383 (429)
T ss_pred ceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEcc-CCCceEEEEECCCCCeE-EeCCC----CCCCCceECC
Confidence 4555 66554432 333344455678999999999887643 23567999999888654 33321 1234578999
Q ss_pred CCCEEEEEeCCCc---EEEEEcCCCeeeEEEeCCCCCCCCceEEEec
Q 001386 589 AKDQILAAGDDHV---IKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1088)
Q Consensus 589 ~~~~l~~~s~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1088)
||+.++.++.++. +.++++ +|.....+..+.+ .+...+|+|
T Consensus 384 DG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~--~~~~p~Wsp 427 (429)
T PRK03629 384 NGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDG--QVKFPAWSP 427 (429)
T ss_pred CCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCC--CcCCcccCC
Confidence 9999999887764 677777 4555566654433 467788876
No 225
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.57 E-value=1.4e-12 Score=127.55 Aligned_cols=241 Identities=12% Similarity=0.149 Sum_probs=171.2
Q ss_pred CCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCC--CeEEEEEcCCCCcEEE-EEeCC------CeEEEEEc
Q 001386 799 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSP--TATSLAFNPHDNNVIA-IGMDD------STILIYNA 869 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~l~~sp~d~~~la-sg~~d------g~i~lwd~ 869 (1088)
....+++|..|...+++|.+...+||+++..+.......+.+ .+..+-|-. ++|| +|+.+ ..|.|||=
T Consensus 6 ~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~---N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRS---NYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred CceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhh---ceEEEecCCCCCCCCCceEEEEec
Confidence 345569999999999999999999999987554333332222 333444432 3444 44433 38999996
Q ss_pred CCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE
Q 001386 870 RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 949 (1088)
Q Consensus 870 ~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~ 949 (1088)
...+++.++. -..+|.++.+++| .|++. ..+.|+||.....-. ....+....... ...+++=..+-.+||.
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k-~l~~~et~~NPk----GlC~~~~~~~k~~Laf 153 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPK-LLHVIETRSNPK----GLCSLCPTSNKSLLAF 153 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChh-heeeeecccCCC----ceEeecCCCCceEEEc
Confidence 6677777777 6688999999876 45544 356799999985321 122222222111 2333333334445555
Q ss_pred -E-eCCeEEEEEcCccee-eeeeecCCCcCEEEEEEeeCCCEEEEEeCCCc-EEEEEcCCCceEEEeccccccCCCCccc
Q 001386 950 -V-HETHLAIYEAEELTC-LKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCL 1025 (1088)
Q Consensus 950 -~-~d~~i~vwd~~~~~~-~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1025 (1088)
| .-|+|+|-|+...+. ......+|.+.|.+++++-+|..|||+|..|+ |||||..+|..+++++.+.-
T Consensus 154 Pg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d-------- 225 (346)
T KOG2111|consen 154 PGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVD-------- 225 (346)
T ss_pred CCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCc--------
Confidence 4 348999999987666 34567899999999999999999999999997 79999999999999884432
Q ss_pred cccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 1026 HVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 1026 ~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~ 1060 (1088)
+-...+++|+| +..+|+++++-|+|+|+.+.+..
T Consensus 226 ~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 226 RADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred hheEEEEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 22346899999 88999999999999999997755
No 226
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.56 E-value=4.9e-13 Score=130.57 Aligned_cols=237 Identities=14% Similarity=0.100 Sum_probs=178.1
Q ss_pred CCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEE
Q 001386 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1088)
Q Consensus 334 ~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las 413 (1088)
..+|+|.+|++|++ .+|++-....|.||.......-. ....+..|...|+++.|+|.+..|++
T Consensus 10 ~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIvt 72 (361)
T KOG1523|consen 10 LEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIVT 72 (361)
T ss_pred cCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCceeE
Confidence 45899999999998 68888888999999987765211 11237789999999999999999999
Q ss_pred EeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee----EEeccCCccEE
Q 001386 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT----YSFEGHGAPVY 489 (1088)
Q Consensus 414 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~----~~~~~~~~~v~ 489 (1088)
++.|..-+||....+...++...+..|....+++.|+|.++ .+++||.-+.|.||=.+...-= +.-+.+...|+
T Consensus 73 cs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~ 150 (361)
T KOG1523|consen 73 CSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVT 150 (361)
T ss_pred ccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCcccccee
Confidence 99999999999966666666667888999999999999999 7999999999999876654321 22244677899
Q ss_pred EEeeeeeCCceEEEEEecCCeEEEEEC-----CC-------------CCceEEecCCCCceEEEEEccCCCEEEEEeeCC
Q 001386 490 SLCPHAKENIHFIFSISVDGKIKAWLY-----DS-------------LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~-----~~-------------~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
++.|+++ +-++++|+.|+..+++.. +. ++...++....+.+..+.|+|+|..|+-.+.
T Consensus 151 sldWhpn--nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H-- 226 (361)
T KOG1523|consen 151 SLDWHPN--NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH-- 226 (361)
T ss_pred eeeccCC--cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC--
Confidence 9999875 468999999999999853 11 1112233455678999999999999999876
Q ss_pred CCceeEEEEeCCCCc-eeEEEeccccccccEEEEEEeCCCCEEEEEeCC
Q 001386 552 EGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD 599 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d 599 (1088)
+..+.+-|..... .+....... -+..++.|..+. .++.++.|
T Consensus 227 --ds~v~~~da~~p~~~v~~~~~~~---lP~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 227 --DSTVSFVDAAGPSERVQSVATAQ---LPLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred --CCceEEeecCCCchhccchhhcc---CCceeeEeecCC-ceeecCCC
Confidence 4458888876654 233333222 466777776553 44555544
No 227
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.56 E-value=4e-10 Score=115.89 Aligned_cols=526 Identities=14% Similarity=0.125 Sum_probs=280.9
Q ss_pred CchhheeecccCCCCceeeeecCCCCeEEEE----E--cccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCC
Q 001386 322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLV----G--TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 395 (1088)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~spdg~~lla~----g--~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h 395 (1088)
+.....+.+..|-+-|+...|+|||+.++.+ | ...+.+.+.+.++|+..+.- .+ |
T Consensus 66 lk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiT-----------------yf-G- 126 (668)
T COG4946 66 LKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRIT-----------------YF-G- 126 (668)
T ss_pred hccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEE-----------------Ee-c-
Confidence 3344456777888899999999999965441 2 22356778888888765421 12 2
Q ss_pred CCCeEE-EEECCCCCEEEEEeCCCE----EEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCC-----
Q 001386 396 GVSVNR-VVWSPDGSLLGVAYSKHI----VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK----- 465 (1088)
Q Consensus 396 ~~~V~~-l~~s~dg~~las~~~dg~----i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~----- 465 (1088)
...+. .-|+|||+.|++...-.- -.+|.+....... -.-.-++.+.+.+- ||. ++.|-.--
T Consensus 127 -r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~----e~LnlGpathiv~~-dg~---ivigRntydLP~W 197 (668)
T COG4946 127 -RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKT----EPLNLGPATHIVIK-DGI---IVIGRNTYDLPHW 197 (668)
T ss_pred -cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCcee----eeccCCceeeEEEe-CCE---EEEccCcccCccc
Confidence 33333 459999999998754322 2334443221100 01122355555553 343 22221110
Q ss_pred -------cEEEEeCCC-CceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEE--CCCCCceEEecCCCCceEEE
Q 001386 466 -------TIKVWDAVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL--YDSLGARVDYDAPGLGCTRM 535 (1088)
Q Consensus 466 -------~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd--~~~~~~~~~~~~~~~~v~~~ 535 (1088)
.=++|--.. |+.-..+-.-.+.|.+-.+ - .++..+....+|.=.+|. ++....... ..-....+=
T Consensus 198 K~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmI--V-~~RvYFlsD~eG~GnlYSvdldGkDlrrH--TnFtdYY~R 272 (668)
T COG4946 198 KGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMI--V-GERVYFLSDHEGVGNLYSVDLDGKDLRRH--TNFTDYYPR 272 (668)
T ss_pred ccccCCccceEEEEecCCcceeeeeecCCCcCCceE--E-cceEEEEecccCccceEEeccCCchhhhc--CCchhcccc
Confidence 123453332 2222222222222222111 1 112233334444444443 322221111 111123334
Q ss_pred EEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccc---cc--cEE---EEE-EeC-CCCEEEEEeCCCcEEEE
Q 001386 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ---HN--SVS---VVH-FDT-AKDQILAAGDDHVIKIW 605 (1088)
Q Consensus 536 ~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~---~~--~v~---~~~-~~~-~~~~l~~~s~dg~i~iw 605 (1088)
..+.||+.++... .+.|+++|+.+....+.--+.... .. .+. -+. |++ +|.+++..|. |...+.
T Consensus 273 ~~nsDGkrIvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~ 346 (668)
T COG4946 273 NANSDGKRIVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIM 346 (668)
T ss_pred ccCCCCcEEEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEE
Confidence 4578999988754 333999999887654433221100 00 011 111 222 5677777764 666666
Q ss_pred EcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCC-cEEEEeCCCCCcccccccccCcceeeeecCCCcceecccc
Q 001386 606 DMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN-RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 684 (1088)
Q Consensus 606 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~ 684 (1088)
+.-.+-.++.-. ...|.-..+..++.-++.|..|| .+-|++..++......
T Consensus 347 ~~~~~~~iqv~~----~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e------------------------ 398 (668)
T COG4946 347 RPWDGYSIQVGK----KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE------------------------ 398 (668)
T ss_pred CCCCCeeEEcCC----CCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee------------------------
Confidence 655544443321 12366667777777888999988 8899988866322111
Q ss_pred CCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEcc
Q 001386 685 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 764 (1088)
Q Consensus 685 ~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~ 764 (1088)
..-+.|.++..+++|+.++++.....+-+.|++
T Consensus 399 -----------------------------------------------~~lg~I~av~vs~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 399 -----------------------------------------------KDLGNIEAVKVSPDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred -----------------------------------------------CCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence 133568889999999999988888777777766
Q ss_pred CCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-C----CcEEEEEcCCceeEEEecCCC
Q 001386 765 RNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-G----GVISLYIVMTFKTILTIMPPS 839 (1088)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-d----g~i~iwd~~~~~~~~~~~~~~ 839 (1088)
.+.. .+. ......-|+.++|+|+++++|.+- + ..|+++|+.+++....- .+.
T Consensus 432 ngnv------------------~~i----dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT-T~t 488 (668)
T COG4946 432 NGNV------------------RLI----DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT-TPT 488 (668)
T ss_pred CCCe------------------eEe----cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec-CCc
Confidence 5532 111 112566799999999999999986 4 45999999987765443 344
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee--eeccccCCeeEEE----ECCCCCEEEE-EeCCCcEEEEEcC
Q 001386 840 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS--KLEGHSKRVTGLV----FSDALNILVS-SGGDAQIFVWDVD 912 (1088)
Q Consensus 840 ~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~--~l~~h~~~V~~l~----~s~dg~~las-~s~Dg~i~iwd~~ 912 (1088)
..-.+-+|.| |+++|..-+.-. .|..+-+.+. .+..|+.+-..+. .||-.+..-. -+.+|.+-+=++.
T Consensus 489 a~DfsPaFD~-d~ryLYfLs~Rs----LdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie 563 (668)
T COG4946 489 AYDFSPAFDP-DGRYLYFLSARS----LDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIE 563 (668)
T ss_pred ccccCcccCC-CCcEEEEEeccc----cCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhc
Confidence 4556678999 888877654311 1222222211 1122322221111 1222222111 2344444333332
Q ss_pred CCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-------------E--eCCeEEEEEcCcceeeeeeecCCCcCE
Q 001386 913 GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-------------V--HETHLAIYEAEELTCLKQWFPISSVPI 977 (1088)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-------------~--~d~~i~vwd~~~~~~~~~~~~~h~~~v 977 (1088)
.. ..++...++. -.+++=-.+|+.+.. + .-|.+.+||+++.+.-.. ...+
T Consensus 564 ~r----~eP~pVee~d------Y~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~-----k~nv 628 (668)
T COG4946 564 DR----VEPFPVEEGD------YRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEY-----KDNV 628 (668)
T ss_pred cc----ccccccCccc------eeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHHH-----hccc
Confidence 21 1122222221 122222233322221 1 235788888887654322 4578
Q ss_pred EEEEEeeCCCEEEEEeCCCcEEEEEcCC
Q 001386 978 SQATFSCDCRMVFTSFVDGTLSIHEASN 1005 (1088)
Q Consensus 978 ~~l~fs~dg~~l~s~s~dg~v~vwd~~~ 1005 (1088)
+++..|+||+.+.. -.||.++.++++.
T Consensus 629 ss~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 629 SSFRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred ceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 99999999999888 7899999999876
No 228
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=9.4e-13 Score=138.20 Aligned_cols=284 Identities=14% Similarity=0.194 Sum_probs=205.2
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEE
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 411 (1088)
+|...-+.+..||||++++|+|...-.|++||+.+-.+.....+ ....|.-.-+|.|-..+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl-------------------Dae~V~feiLsDD~SK~ 109 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL-------------------DAEVVDFEILSDDYSKS 109 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc-------------------cccceeEEEeccchhhh
Confidence 45667889999999999999999999999999987665433111 23556666677777777
Q ss_pred EEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEE
Q 001386 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1088)
Q Consensus 412 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 491 (1088)
+.-..|.+|.+-.-. |..... .+. ..-..++++.-.-. |+.++....|+-++++.|+.+..+....+.++++
T Consensus 110 v~L~~DR~IefHak~-G~hy~~--RIP---~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v 181 (703)
T KOG2321|consen 110 VFLQNDRTIEFHAKY-GRHYRT--RIP---KFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVV 181 (703)
T ss_pred eEeecCceeeehhhc-Ceeeee--ecC---cCCccccccCCCcc--EEEeecCcceEEEEccccccccccccccccceee
Confidence 777788877664322 211110 111 12234455443332 3334445568889999999999998888999999
Q ss_pred eeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCC------CC-----ceEEEEEccCCCEEEEEeeCCCCceeEEEE
Q 001386 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GL-----GCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1088)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~-----~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 560 (1088)
.+++. ..+|++|+.+|.|..||.+.......+... .+ .|+++.|+.+|-.+++|.. .|.+++|
T Consensus 182 ~in~~--hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~G~v~iy 255 (703)
T KOG2321|consen 182 SINEE--HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----TGSVLIY 255 (703)
T ss_pred eecCc--cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----CCcEEEE
Confidence 88544 358999999999999999887655443322 11 4899999999999999976 5569999
Q ss_pred eCCCCceeEEEeccccccccEEEEEEeCCC--CEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEE
Q 001386 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAK--DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1088)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1088)
|+++.+++..-.. . ..-+|..+.|.+.+ +.+++ .....++|||-.+|+....+.... .++.+|+-|++.++.
T Consensus 256 DLRa~~pl~~kdh-~-~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt~---~lND~C~~p~sGm~f 329 (703)
T KOG2321|consen 256 DLRASKPLLVKDH-G-YELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPTS---DLNDFCFVPGSGMFF 329 (703)
T ss_pred EcccCCceeeccc-C-CccceeeecccccCCCceEEe-cchHHhhhcccccCCceeeccccC---CcCceeeecCCceEE
Confidence 9999887654332 2 24678899997763 34444 345779999999999998886543 488999999999999
Q ss_pred EEeCCCcEEEEeCCCC
Q 001386 639 VIANENRIKILETPES 654 (1088)
Q Consensus 639 ~~~~dg~i~iwd~~~~ 654 (1088)
++..++.+..|=++..
T Consensus 330 ~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 330 TANESSKMHTYYIPSL 345 (703)
T ss_pred EecCCCcceeEEcccc
Confidence 9999988887766643
No 229
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=1.5e-11 Score=132.14 Aligned_cols=520 Identities=11% Similarity=0.131 Sum_probs=301.7
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCc------------ccceeEeccCCCCEEEEEecCCCCcEEEEEEe
Q 001386 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD------------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 462 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~------------~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s 462 (1088)
......|++|+....++|.|+.||.++|-.+.+... +..-.++.||.+.|.-+.|+.+.+ .|-+..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence 456789999999999999999999999998875422 111235789999999999999888 789999
Q ss_pred CCCcEEEEeCCCCceeEEec--cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccC
Q 001386 463 DDKTIKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN 540 (1088)
Q Consensus 463 ~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 540 (1088)
.+|.|.||-+-.|.-...+. ...+.|.+++| +.+|..+.....||.|.+=.++..+ +.--...+.....+.|++|
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsW--n~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D 167 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSW--NLDGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWSED 167 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEE--cCCCcEEEEEEccCCEEEEeeccce-ecchhcchheccceeeccc
Confidence 99999999988886543332 24566778887 5678888888888888776554322 1111222223456889999
Q ss_pred CCEEEEEeeCCCCceeEEEEeCCCCc-------eeEEEec-cccccccEEEEEEe--------CCCCEEEEEeCCCcEEE
Q 001386 541 GRRLFSCGTSKEGESFLVEWNESEGA-------IKRTYQG-LQLQHNSVSVVHFD--------TAKDQILAAGDDHVIKI 604 (1088)
Q Consensus 541 g~~l~~~~~~~~~~~~i~iwd~~~~~-------~~~~~~~-~~~~~~~v~~~~~~--------~~~~~l~~~s~dg~i~i 604 (1088)
.+.++.+-. ++.+.++|.+..- +.-...+ .......+..+.|. |+...++.+..+|.+.|
T Consensus 168 ~~~~Lf~~a----nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 168 LEQALFKKA----NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred HHHHHhhhc----CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence 998887654 3448888865321 1111111 11011234555553 57889999999999888
Q ss_pred EEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCC---------cEEEEeCCCCCcccccccccCcceeeeecCC
Q 001386 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN---------RIKILETPESNSVDAAGVLSDNLRKLSVNPI 675 (1088)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~ 675 (1088)
-.-.+...-..+... -.+..+.|+++|..||+++.+. .|.+|. .-|..+.+++.....|+.++|-..
T Consensus 244 MR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~ 319 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGT 319 (1189)
T ss_pred hhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCC
Confidence 765544333333322 2467899999999999998652 222222 123333344444444444444322
Q ss_pred CcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccc
Q 001386 676 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 755 (1088)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d 755 (1088)
+..++.+ .|+.|.+=++. |+-+ -.....
T Consensus 320 gLriA~A-----------------------vdsfiyfanIR---------------------------P~yk--Wgy~e~ 347 (1189)
T KOG2041|consen 320 GLRIAIA-----------------------VDSFIYFANIR---------------------------PEYK--WGYIEE 347 (1189)
T ss_pred ceEEEEE-----------------------ecceEEEEeec---------------------------ccce--EEEeee
Confidence 2211110 01111111100 0000 000000
Q ss_pred cceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEE-cCCceeEE
Q 001386 756 GVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYI-VMTFKTIL 833 (1088)
Q Consensus 756 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd-~~~~~~~~ 833 (1088)
..|.+|. .. ......+..||..+.+.... .-....+++++.+--.|+.-. ++.+.-++ +++...+.
T Consensus 348 TvVy~y~--~~---e~p~y~i~Fwdtk~nek~vK-------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~ 415 (1189)
T KOG2041|consen 348 TVVYVYQ--KE---ELPQYGIMFWDTKTNEKTVK-------TVTHFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVY 415 (1189)
T ss_pred EEEEEEc--cC---CCcceEEEEEecccChhhhh-------hhcceeehheecccEEEEeccccCCCcchhhhhcccceE
Confidence 0111111 00 01222344556555443222 223445677776655555544 55554442 12211111
Q ss_pred Eec-----C-----CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee-----------------------------
Q 001386 834 TIM-----P-----PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV----------------------------- 874 (1088)
Q Consensus 834 ~~~-----~-----~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~----------------------------- 874 (1088)
.+. + .-..|.-.-..- ++..++.++.+ .+.+|.....+.
T Consensus 416 ~l~LCNSIGT~lD~kytdirP~Fv~v-n~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l 493 (1189)
T KOG2041|consen 416 FLQLCNSIGTSLDYKYTDIRPKFVCV-NGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTL 493 (1189)
T ss_pred EEeeecccCCcCCCCcceeeeeEEEe-cceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhcee
Confidence 111 0 001121111111 56677777766 477886543211
Q ss_pred ---eeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-E
Q 001386 875 ---ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V 950 (1088)
Q Consensus 875 ---~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~ 950 (1088)
..++.|..++|.+++.| .++|..+-..|.|.-+.+..... .+...- ...+.+++.+.+...+|+ -
T Consensus 494 ~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l-----~n~y~~----n~~~y~~~lNCnstRlAiId 562 (1189)
T KOG2041|consen 494 EYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVL-----TNSYPV----NPSIYSIKLNCNSTRLAIID 562 (1189)
T ss_pred eccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceee-----eecccc----CchheeEeeccCcchhhhhh
Confidence 13445566788888886 57888899999999999987432 222211 135889999999999988 4
Q ss_pred eCCeEEEEEcC---cceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcC
Q 001386 951 HETHLAIYEAE---ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1004 (1088)
Q Consensus 951 ~d~~i~vwd~~---~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~ 1004 (1088)
.-|.+.+.|+. +|..+.-+.......|..+.|..|...|+.--....+.|++-.
T Consensus 563 ~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifrgn 619 (1189)
T KOG2041|consen 563 LVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFRGN 619 (1189)
T ss_pred hhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEecCc
Confidence 56777777765 5555555565567788889998888776655555566666533
No 230
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=7.6e-13 Score=149.37 Aligned_cols=233 Identities=14% Similarity=0.108 Sum_probs=153.7
Q ss_pred CCCchhheeecccCCCCceeeeecCCCCeEEEEEc--ccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCC
Q 001386 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1088)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~ 397 (1088)
.+......+.+..+...+...+|||||+.++.+.. .+..|.+||+.+|+... +....+
T Consensus 184 ~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~~~~ 243 (429)
T PRK03629 184 SDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPR 243 (429)
T ss_pred EcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccCCCC
Confidence 33344445666667778999999999996544432 23579999998886433 111233
Q ss_pred CeEEEEECCCCCEEEEE-eCCC--EEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeC-CCc--EEEEe
Q 001386 398 SVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKT--IKVWD 471 (1088)
Q Consensus 398 ~V~~l~~s~dg~~las~-~~dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~-d~~--i~vwd 471 (1088)
.+..++|||||+.|+.. +.+| .|.+||+.+++.. .+..+...+....|+|||+ .|+..+. ++. |.++|
T Consensus 244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~Iy~~d 317 (429)
T PRK03629 244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQVYKVN 317 (429)
T ss_pred CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCC--EEEEEeCCCCCceEEEEE
Confidence 34568999999999876 3344 5899999987543 3444556778899999999 4544443 344 45557
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecC---CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 548 (1088)
+.+++. ..+..+........| ++||++++..+.+ ..|.+||++++.... +... .......|+|||+.|+..+
T Consensus 318 ~~~g~~-~~lt~~~~~~~~~~~--SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~-~~~~~p~~SpDG~~i~~~s 392 (429)
T PRK03629 318 INGGAP-QRITWEGSQNQDADV--SSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT-FLDETPSIAPNGTMVIYSS 392 (429)
T ss_pred CCCCCe-EEeecCCCCccCEEE--CCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCC-CCCCCceECCCCCEEEEEE
Confidence 766654 344334444445566 5577787776543 358889988776443 2222 2334678999999999988
Q ss_pred eCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeC
Q 001386 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1088)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1088)
.++. ...++++++ +|...+.+.++. +.+...+|+|
T Consensus 393 ~~~~-~~~l~~~~~-~G~~~~~l~~~~---~~~~~p~Wsp 427 (429)
T PRK03629 393 SQGM-GSVLNLVST-DGRFKARLPATD---GQVKFPAWSP 427 (429)
T ss_pred cCCC-ceEEEEEEC-CCCCeEECccCC---CCcCCcccCC
Confidence 6433 456888887 455556676665 6677778876
No 231
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=2.6e-12 Score=146.26 Aligned_cols=237 Identities=13% Similarity=0.072 Sum_probs=160.9
Q ss_pred CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeC---CCEEEEEEccCCCcccc
Q 001386 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ 433 (1088)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~---dg~i~vwd~~~~~~~~~ 433 (1088)
..|.+||...+.... +..|...+.+.+|||||+.|+..+. +..|.+||+.+++..
T Consensus 182 ~~l~~~d~dg~~~~~--------------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-- 239 (435)
T PRK05137 182 KRLAIMDQDGANVRY--------------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-- 239 (435)
T ss_pred eEEEEECCCCCCcEE--------------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence 478888886554322 5568889999999999999998764 468999999988642
Q ss_pred eeEeccCCCCEEEEEecCCCCcEEEEEEeCCCc--EEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEec-CC-
Q 001386 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG- 509 (1088)
Q Consensus 434 ~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~--i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg- 509 (1088)
.+..+.+.+...+|+|||+. ++++.+.++. |.+||+.++.. ..+..+........| ++||+.++..+. +|
T Consensus 240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~--spDG~~i~f~s~~~g~ 313 (435)
T PRK05137 240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSY--SPDGSQIVFESDRSGS 313 (435)
T ss_pred --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeE--cCCCCEEEEEECCCCC
Confidence 35566677889999999995 3455666655 77779887765 445556555566667 557777776653 33
Q ss_pred -eEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeC
Q 001386 510 -KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1088)
Q Consensus 510 -~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1088)
.|.+||+....... +......+....|+|||+.|+..... .+...|.+||..++.. +.+.. . ..+....|+|
T Consensus 314 ~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~~~~-~~~~~i~~~d~~~~~~-~~lt~-~---~~~~~p~~sp 386 (435)
T PRK05137 314 PQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFTKQG-GGQFSIGVMKPDGSGE-RILTS-G---FLVEGPTWAP 386 (435)
T ss_pred CeEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEEEEcC-CCceEEEEEECCCCce-EeccC-C---CCCCCCeECC
Confidence 57788876654433 33334456678899999999987643 2346799999866543 33322 1 2456788999
Q ss_pred CCCEEEEEeCC------CcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec
Q 001386 589 AKDQILAAGDD------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1088)
Q Consensus 589 ~~~~l~~~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1088)
||+.++..+.+ ..+.++|+..+.. ..+...+ .+...+|+|
T Consensus 387 DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~---~~~~p~Wsp 432 (435)
T PRK05137 387 NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG---DASDPAWSP 432 (435)
T ss_pred CCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCC---CccCcccCC
Confidence 99998875543 2577888866544 3443221 245667765
No 232
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.53 E-value=4.2e-09 Score=127.67 Aligned_cols=575 Identities=12% Similarity=0.131 Sum_probs=306.3
Q ss_pred CCCCceeeeecCCCCeEEEEEcccCcEEEE----ecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCC
Q 001386 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLW----DVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1088)
Q Consensus 333 h~~~V~~v~~spdg~~lla~g~~dg~i~iw----d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg 408 (1088)
..+.|.++.|-++.. -++.+..+|.|.+. +..+...-. ...-...|.+++||||+
T Consensus 74 ~~~~ivs~~yl~d~~-~l~~~~~~Gdi~~~~~~~~~~~~~~E~--------------------VG~vd~GI~a~~WSPD~ 132 (928)
T PF04762_consen 74 PNDKIVSFQYLADSE-SLCIALASGDIILVREDPDPDEDEIEI--------------------VGSVDSGILAASWSPDE 132 (928)
T ss_pred CCCcEEEEEeccCCC-cEEEEECCceEEEEEccCCCCCceeEE--------------------EEEEcCcEEEEEECCCc
Confidence 345899999999988 47777888999999 555544332 22245789999999999
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceeEeccCC-----CCEEEEEecCCCCcEEEEEEeCCCcE-E-EEeCCCC-ceeEE
Q 001386 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV-----GNVNDLAFSAPCKQISVITCGDDKTI-K-VWDAVTG-SRTYS 480 (1088)
Q Consensus 409 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~-----~~v~~~~~s~d~~~l~l~s~s~d~~i-~-vwd~~~~-~~~~~ 480 (1088)
..||.++.++++.+.+-. -+.+. +..-+. ..-..+-|-....+ +=|+.-+.. + .=|.... .....
T Consensus 133 Ella~vT~~~~l~~mt~~-fd~i~---E~~l~~~~~~~~~~VsVGWGkKeTQ---F~Gs~gK~aa~~~~~p~~~~~d~~~ 205 (928)
T PF04762_consen 133 ELLALVTGEGNLLLMTRD-FDPIS---EVPLDSDDFGESKHVSVGWGKKETQ---FHGSAGKAAARQLRDPTVPKVDEGK 205 (928)
T ss_pred CEEEEEeCCCEEEEEecc-ceEEE---EeecCccccCCCceeeeccCcccCc---cCcchhhhhhhhccCCCCCccccCc
Confidence 999999999988876422 11111 111111 11122333222111 001100000 0 0010000 00011
Q ss_pred eccCCccEEEEeeeeeCCceEEEEEec---C---CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCc
Q 001386 481 FEGHGAPVYSLCPHAKENIHFIFSISV---D---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1088)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~ 554 (1088)
+. +...-..++| .+||.++++.+. . +.+|+|+-+ +.....-....+--.+++|-|.|+++|+... ..+.
T Consensus 206 ~s-~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~ 280 (928)
T PF04762_consen 206 LS-WDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDR 280 (928)
T ss_pred cc-cCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCC
Confidence 22 3333444555 789999998875 3 469999755 3333333333333457899999999999875 3334
Q ss_pred eeEEEEeCCCCceeEEEeccc-cccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeE--EEeCCCCCCCCceEEEe
Q 001386 555 SFLVEWNESEGAIKRTYQGLQ-LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--TIDAGGGLPENPRICFN 631 (1088)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~v~~s 631 (1088)
..|..|. ++|-.-..|.... .....|..+.|++|+..|+....|. |.+|...+..... .+..... ..+..+.|+
T Consensus 281 ~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wd 357 (928)
T PF04762_consen 281 HDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWD 357 (928)
T ss_pred cEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEEC
Confidence 5566776 4454444444321 1236789999999999999977655 9999988765432 3332222 234559999
Q ss_pred cC-CCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccc
Q 001386 632 KN-GTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 710 (1088)
Q Consensus 632 ~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 710 (1088)
|. ...|.+.+.+|.+..++..-.. ..++.. .++..-.+..-...++
T Consensus 358 pe~p~~L~v~t~~g~~~~~~~~~~v---------------~~s~~~------------------~~~D~g~vaVIDG~~l 404 (928)
T PF04762_consen 358 PEKPLRLHVLTSNGQYEIYDFAWDV---------------SRSPGS------------------SPNDNGTVAVIDGNKL 404 (928)
T ss_pred CCCCCEEEEEecCCcEEEEEEEEEE---------------EecCCC------------------CccCceEEEEEeCCeE
Confidence 94 5567777777777665543110 000000 0000000000011122
Q ss_pred eeccc---cccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcc-cCCCCCCc
Q 001386 711 EVEKP---LFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRL-YQPRHGPQ 786 (1088)
Q Consensus 711 ~vw~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-~~~~~~~~ 786 (1088)
.+-.+ ..+.|.....+. -...|..++|++++..+++...||.+.+|.++....... ..+.+ .......
T Consensus 405 llTpf~~a~VPPPMs~~~l~-----~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~- 476 (928)
T PF04762_consen 405 LLTPFRRAVVPPPMSSYELE-----LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSV--KPPKLLSSISLDS- 476 (928)
T ss_pred EEecccccCCCchHhceEEc-----CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccc--cCcchhhhccccc-
Confidence 22221 112222223333 235799999999999899999999999999765543110 00000 0000000
Q ss_pred ceeeccCCCCCCCCeeEEEEecCCCEEEEEeC----CcEEEEEcCCce---eEEEecCCCCCeEEEEEcCCCCcEEEEEe
Q 001386 787 FMVNDTTDSNSQEAVPCFALSKNDAYLFSASG----GVISLYIVMTFK---TILTIMPPSPTATSLAFNPHDNNVIAIGM 859 (1088)
Q Consensus 787 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d----g~i~iwd~~~~~---~~~~~~~~~~~i~~l~~sp~d~~~lasg~ 859 (1088)
... .........+..++|..+..+++.... ..+.+++....+ .+.........+..+...+ +...++.-.
T Consensus 477 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~ 553 (928)
T PF04762_consen 477 MDI--SDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-DSGSLYIQT 553 (928)
T ss_pred ccc--cccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-CCcEEEEEE
Confidence 000 000013456788888888877777653 458888874332 2333333445555555555 444466677
Q ss_pred CCCeEEEEEcCCcee-eeeeccccCCeeEEEECCCC--CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeE
Q 001386 860 DDSTILIYNARSSEV-ISKLEGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET 936 (1088)
Q Consensus 860 ~dg~i~lwd~~~~~~-~~~l~~h~~~V~~l~~s~dg--~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 936 (1088)
.+|.+...+...... +..|..-...+..+.+.... ..++.-+..|.+++ ++ ..+. ..++
T Consensus 554 ~~G~v~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~---n~------~~la---------~~~t 615 (928)
T PF04762_consen 554 NDGKVFQLSSDGELSQIVKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYA---NS------RLLA---------SNCT 615 (928)
T ss_pred CCCEEEEeecCCCccccccCCCCCcEEEEEEECCccceeEEEEECCCCEEEE---CC------EEEe---------cCCc
Confidence 799888766554322 22333222222222332222 13444444454433 21 0111 1355
Q ss_pred EEEEcCCCCEEE-EEeCCeEEEEEcCc-ceeeeeeecC----CCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEE
Q 001386 937 HIQFHKDQTRFL-LVHETHLAIYEAEE-LTCLKQWFPI----SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1010 (1088)
Q Consensus 937 ~~~fs~dg~~l~-~~~d~~i~vwd~~~-~~~~~~~~~~----h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~ 1010 (1088)
+.++ .+.+|+ +.....++..++.. -..+...... +...++.+ .-|..|+++--...=.|..++.|.+-+
T Consensus 616 SF~v--~~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~V---ERGsriVt~vp~~~~vVLQmPRGNLEt 690 (928)
T PF04762_consen 616 SFAV--TDSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRRV---ERGSRIVTAVPSDTSVVLQMPRGNLET 690 (928)
T ss_pred eEEE--EcCEEEEEecCceEEEEECcCchhhcccccCccccccccccccC---ccCCEEEEEeCCCceEEEEcCCCchhh
Confidence 6655 344444 46777888888881 1111111111 11223332 367788877655566677888887753
No 233
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=1.1e-12 Score=149.01 Aligned_cols=234 Identities=15% Similarity=0.146 Sum_probs=153.6
Q ss_pred cCCCchhheeecccCCCCceeeeecCCCCeEEEEEcc--cCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCC
Q 001386 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN--VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 396 (1088)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~--dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~ 396 (1088)
+.+......+.|..|...+.+.+|||||++++.+... ...|.+||+.+|+... +..+.
T Consensus 188 i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~ 247 (433)
T PRK04922 188 VADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VASFR 247 (433)
T ss_pred EECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------eccCC
Confidence 3444455566777777789999999999964444322 2469999998886543 22234
Q ss_pred CCeEEEEECCCCCEEEEE-eCCC--EEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEe-CCCc--EEEE
Q 001386 397 VSVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKT--IKVW 470 (1088)
Q Consensus 397 ~~V~~l~~s~dg~~las~-~~dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s-~d~~--i~vw 470 (1088)
+...+++|||||+.|+.. +.+| .|.+||+.+++.. .+..+.......+|+|||+. ++..+ .++. |.++
T Consensus 248 g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~~ 321 (433)
T PRK04922 248 GINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYRV 321 (433)
T ss_pred CCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCE--EEEEECCCCCceEEEE
Confidence 455678999999988754 4444 5999999987632 35556556678899999994 44444 4444 6677
Q ss_pred eCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCC---eEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001386 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1088)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 547 (1088)
|+.+++.. .+..+.......+| +++|+.++..+.++ .|.+||+.++.... +. +........|+|||++++..
T Consensus 322 dl~~g~~~-~lt~~g~~~~~~~~--SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt-~~~~~~~p~~spdG~~i~~~ 396 (433)
T PRK04922 322 AASGGSAE-RLTFQGNYNARASV--SPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LT-PGSLDESPSFAPNGSMVLYA 396 (433)
T ss_pred ECCCCCeE-EeecCCCCccCEEE--CCCCCEEEEEECCCCceeEEEEECCCCCeEE-CC-CCCCCCCceECCCCCEEEEE
Confidence 77777643 23223333445566 55777877765443 59999998766543 22 22234567999999999887
Q ss_pred eeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeC
Q 001386 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1088)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1088)
+.. .+...|++++... ...+.+..+. +.+...+|+|
T Consensus 397 s~~-~g~~~L~~~~~~g-~~~~~l~~~~---g~~~~p~wsp 432 (433)
T PRK04922 397 TRE-GGRGVLAAVSTDG-RVRQRLVSAD---GEVREPAWSP 432 (433)
T ss_pred Eec-CCceEEEEEECCC-CceEEcccCC---CCCCCCccCC
Confidence 754 3466799999854 4445554433 4556666665
No 234
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1.3e-13 Score=143.46 Aligned_cols=239 Identities=18% Similarity=0.223 Sum_probs=161.0
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+.||++.|.|++|+.||.+||+|+.|-.+.|||.-..+.+..+ -.||...|.++.|-|....-.+++|..|..|+++|
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--ecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 8899999999999999999999999999999999977766554 34999999999999976655899999999999999
Q ss_pred CCC----------CceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceE----------EecCCCCc
Q 001386 472 AVT----------GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV----------DYDAPGLG 531 (1088)
Q Consensus 472 ~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----------~~~~~~~~ 531 (1088)
+.. ....+.+..|...|..++..+. .-..+.+++.||+|+-+|++....-. .+...--.
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~-~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPN-GPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCC-CCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 884 2334566778888888887543 22689999999999999998632111 11111124
Q ss_pred eEEEEEccCCCE-EEEEeeCCCCceeEEEEeCCCCceeEEEecccccc----ccEEEEE-EeCCCCEEEEEeCCCcEEEE
Q 001386 532 CTRMAYSANGRR-LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH----NSVSVVH-FDTAKDQILAAGDDHVIKIW 605 (1088)
Q Consensus 532 v~~~~~s~~g~~-l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~----~~v~~~~-~~~~~~~l~~~s~dg~i~iw 605 (1088)
..++..+|...+ |++|+. +...++||.+.. +..+.....+. ....|+. |+|.+- ...+|
T Consensus 203 lk~ltisp~rp~~laVGgs----dpfarLYD~Rr~--lks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~~g----- 267 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGS----DPFARLYDRRRV--LKSFRSDGTMNTCPPKDCRCVRYFSPGHL----KNSQG----- 267 (758)
T ss_pred eeeeeecCCCCceEEecCC----Cchhhhhhhhhh--ccCCCCCccccCCCCcccchhheecCccc----cCccc-----
Confidence 678899996654 555543 667889995321 11221111000 0011111 222210 11111
Q ss_pred EcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccc
Q 001386 606 DMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA 659 (1088)
Q Consensus 606 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 659 (1088)
..... ...++-++|+|+|.-|.+.-....|+++|+..++....
T Consensus 268 -----n~~~~------~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 268 -----NLDRY------ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred -----ccccc------eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 11100 01246689999998777776667999999998765543
No 235
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=2.2e-12 Score=146.58 Aligned_cols=238 Identities=16% Similarity=0.125 Sum_probs=157.7
Q ss_pred CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCC---CEEEEEEccCCCcccc
Q 001386 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQ 433 (1088)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~d---g~i~vwd~~~~~~~~~ 433 (1088)
.+|.+||...+.... +..+...+.+.+|+|||+.|+.++.+ ..|.+||+.+++..
T Consensus 184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-- 241 (433)
T PRK04922 184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-- 241 (433)
T ss_pred EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--
Confidence 468899986543322 44577889999999999999988743 46999999887642
Q ss_pred eeEeccCCCCEEEEEecCCCCcEEEEEEeCCC--cEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEe-cCCe
Q 001386 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGK 510 (1088)
Q Consensus 434 ~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~ 510 (1088)
.+..+.+...+.+|+|||+. ++++.+.++ .|.+||+.+++. ..+..+.......+| ++||+.++..+ .+|.
T Consensus 242 --~l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~--spDG~~l~f~sd~~g~ 315 (433)
T PRK04922 242 --LVASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTW--APDGKSIYFTSDRGGR 315 (433)
T ss_pred --EeccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEE--CCCCCEEEEEECCCCC
Confidence 23344455568899999995 334555555 599999988875 345555555556677 55777777665 3454
Q ss_pred --EEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeC
Q 001386 511 --IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1088)
Q Consensus 511 --i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1088)
|.++|+.+++... +..........+|+|||++++....+ .+...|.+||+.+++.. .+.. . .......|+|
T Consensus 316 ~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~~-~Lt~-~---~~~~~p~~sp 388 (433)
T PRK04922 316 PQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSVR-TLTP-G---SLDESPSFAP 388 (433)
T ss_pred ceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCeE-ECCC-C---CCCCCceECC
Confidence 6666666554332 22233344568999999999987642 33557999999888765 3322 1 1234568999
Q ss_pred CCCEEEEEeCC---CcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec
Q 001386 589 AKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1088)
Q Consensus 589 ~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1088)
||++++..+.+ +.|.++++.. .....+..+.+ .+...+|+|
T Consensus 389 dG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~g--~~~~p~wsp 432 (433)
T PRK04922 389 NGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSADG--EVREPAWSP 432 (433)
T ss_pred CCCEEEEEEecCCceEEEEEECCC-CceEEcccCCC--CCCCCccCC
Confidence 99998876653 4577888854 44454543322 356667765
No 236
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=2.2e-11 Score=128.48 Aligned_cols=285 Identities=11% Similarity=0.120 Sum_probs=187.0
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE-
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA- 414 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~- 414 (1088)
.....++|++|+ ++|.+. +..++|++..++..+.+. ....+.++-|||-|.+|.+=
T Consensus 36 ~~~v~~~S~~G~-lfA~~~-~~~v~i~~~~~~~~~lt~---------------------~~~~~~~L~fSP~g~yL~T~e 92 (566)
T KOG2315|consen 36 PCNVFAYSNNGR-LFAYSD-NQVVKVFEIATLKVVLCV---------------------ELKKTYDLLFSPKGNYLLTWE 92 (566)
T ss_pred cceeEEEcCCCc-EEEEEc-CCeEEEEEccCCcEEEEe---------------------ccceeeeeeeccccccccccc
Confidence 477889999998 677654 488999999988644321 22378999999999999863
Q ss_pred ----eC-----CCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCC
Q 001386 415 ----YS-----KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1088)
Q Consensus 415 ----~~-----dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 485 (1088)
.. .-.+.+|+++++.....+ ..+ .+.. ++..|+.|.. ++.--..+.+.+|++..-+.+ .-.-|.
T Consensus 93 ~~~i~~~~~~~~pn~~v~~vet~~~~s~~-q~k-~Q~~-W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~-~~kl~~ 165 (566)
T KOG2315|consen 93 PWAIYGPKNASNPNVLVYNVETGVQRSQI-QKK-MQNG-WVPQFSIDES---LAARLVSNEVQFYDLGSFKTI-QHKLSV 165 (566)
T ss_pred ccccccCCCCCCCceeeeeeccceehhhe-ehh-hhcC-cccccccchh---hhhhhhcceEEEEecCCccce-eeeeec
Confidence 11 234789999995432211 222 2222 6899999987 333333567999998764332 122356
Q ss_pred ccEEEEeeeeeCCceEEEE-----EecCCeEEEEECCCCCceEEec---CCCCceEEEEEccCCCEEEEEe-e--C----
Q 001386 486 APVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGRRLFSCG-T--S---- 550 (1088)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~g~~l~~~~-~--~---- 550 (1088)
..|+.+.+++.+.-..+++ .+.-+.|++|.+.......... .-...-..+.|++-|.-|++.. . |
T Consensus 166 ~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~ 245 (566)
T KOG2315|consen 166 SGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNA 245 (566)
T ss_pred cceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCc
Confidence 7788888877755555554 4566779999776222111110 0111223577888777544322 2 1
Q ss_pred -CCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEE--EeCCCcEEEEEcCCCeeeEEEeCCCCCCCCce
Q 001386 551 -KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1088)
Q Consensus 551 -~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1088)
.-|+..+++.+.......-.+.. .++|.++.|+|+++.+++ |-.-.++.|+|++ +.++..+... +-++
T Consensus 246 SYYGEq~Lyll~t~g~s~~V~L~k----~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~eg----pRN~ 316 (566)
T KOG2315|consen 246 SYYGEQTLYLLATQGESVSVPLLK----EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPEG----PRNT 316 (566)
T ss_pred cccccceEEEEEecCceEEEecCC----CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCCC----Cccc
Confidence 12466788888873333333322 479999999999987766 5577889999985 5666666432 3478
Q ss_pred EEEecCCCEEEEEeC---CCcEEEEeCCCCCcccc
Q 001386 628 ICFNKNGTLLAVIAN---ENRIKILETPESNSVDA 659 (1088)
Q Consensus 628 v~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~ 659 (1088)
+-|+|.|++++.++- .|.|.|||+.+.+.+..
T Consensus 317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~ 351 (566)
T KOG2315|consen 317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAK 351 (566)
T ss_pred eEECCCCCEEEEeecCCCCCceEEEeccchhhccc
Confidence 999999999998876 48899999997665543
No 237
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.52 E-value=8.5e-12 Score=129.65 Aligned_cols=281 Identities=14% Similarity=0.106 Sum_probs=188.2
Q ss_pred CCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEE
Q 001386 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1088)
Q Consensus 334 ~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las 413 (1088)
.-++..++|||.|+ +|++... ..|.+|....+..+..+ ....|..+.|||.++||.+
T Consensus 32 ~~p~~~~~~SP~G~-~l~~~~~-~~V~~~~g~~~~~l~~~---------------------~~~~V~~~~fSP~~kYL~t 88 (561)
T COG5354 32 NWPVAYVSESPLGT-YLFSEHA-AGVECWGGPSKAKLVRF---------------------RHPDVKYLDFSPNEKYLVT 88 (561)
T ss_pred CcchhheeecCcch-heehhhc-cceEEccccchhheeee---------------------ecCCceecccCcccceeee
Confidence 34789999999998 5776544 67999998887755431 2357999999999999998
Q ss_pred EeCCC---------------EEEEEEccCCCcccceeEeccCCCC--EE-EEEecCCCCcEEEEEEeCCCcEEEEeCCCC
Q 001386 414 AYSKH---------------IVQLYAYHGGSDARQQLEIDAHVGN--VN-DLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1088)
Q Consensus 414 ~~~dg---------------~i~vwd~~~~~~~~~~~~~~~h~~~--v~-~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~ 475 (1088)
=+..+ .+.+||+.+|..+. .+.+...+ .+ -+.|+-+.+. ++=- ....+.|+++ ++
T Consensus 89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~---sf~~~~q~~~~Wp~~k~s~~D~y--~ARv-v~~sl~i~e~-t~ 161 (561)
T COG5354 89 WSREPIIEPEIEISPFTSKNNVFVWDIASGMIVF---SFNGISQPYLGWPVLKFSIDDKY--VARV-VGSSLYIHEI-TD 161 (561)
T ss_pred eccCCccChhhccCCccccCceeEEeccCceeEe---eccccCCcccccceeeeeecchh--hhhh-ccCeEEEEec-CC
Confidence 65433 38999999997665 34444444 44 6789988883 3322 2346999997 43
Q ss_pred cee-EEeccC-CccEEEEeeeeeCCceEEEE-----EecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001386 476 SRT-YSFEGH-GAPVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1088)
Q Consensus 476 ~~~-~~~~~~-~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 548 (1088)
... ..+..- ...|....++|..++..|+. ...++++++|.+.....+.....-...-..+.|.+.|++|++-.
T Consensus 162 n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~ 241 (561)
T COG5354 162 NIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLV 241 (561)
T ss_pred ccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEE
Confidence 321 122111 24567777777666666554 46778899999886555544333333334578899998876543
Q ss_pred e-------CCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEE--eCCCcEEEEEcCCCeeeEEEeCC
Q 001386 549 T-------SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA--GDDHVIKIWDMNKVQLLTTIDAG 619 (1088)
Q Consensus 549 ~-------~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--s~dg~i~iwd~~~~~~~~~~~~~ 619 (1088)
. +.-|+..++++++....+ ....... ++|...+|.|.++.+++. ..+..+.++|++.. ....+...
T Consensus 242 ~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~---~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~ 316 (561)
T COG5354 242 MTHTKSNKSYFGESNLYLLRITERSI-PVEKDLK---DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQ 316 (561)
T ss_pred EEeeecccceeccceEEEEeeccccc-ceecccc---ccceeeeecccCCceeEEecccccceeecccccc-eEEecCCc
Confidence 2 112346688888773332 2222333 899999999999887764 47888999999765 44444322
Q ss_pred CCCCCCceEEEecCCCEEEEEeCC---CcEEEEeCCC
Q 001386 620 GGLPENPRICFNKNGTLLAVIANE---NRIKILETPE 653 (1088)
Q Consensus 620 ~~~~~v~~v~~s~~~~~l~~~~~d---g~i~iwd~~~ 653 (1088)
. -+.+.|+|.+++++.++-| |.+.+|+...
T Consensus 317 ~----rNT~~fsp~~r~il~agF~nl~gni~i~~~~~ 349 (561)
T COG5354 317 K----RNTIFFSPHERYILFAGFDNLQGNIEIFDPAG 349 (561)
T ss_pred c----cccccccCcccEEEEecCCccccceEEeccCC
Confidence 2 3668999999999987765 6777877653
No 238
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.52 E-value=5.9e-14 Score=143.41 Aligned_cols=268 Identities=16% Similarity=0.168 Sum_probs=212.3
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC
Q 001386 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1088)
Q Consensus 396 ~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~ 475 (1088)
......+.++.+|+.|+.|+..|.|-.+|+.+++.... +. -...|.++.|..+.+ +++++ ....+.||| ..|
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~E---i~-v~Etv~Dv~~LHneq--~~AVA-QK~y~yvYD-~~G 200 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFE---IN-VMETVRDVTFLHNEQ--FFAVA-QKKYVYVYD-NNG 200 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeee---ee-hhhhhhhhhhhcchH--HHHhh-hhceEEEec-CCC
Confidence 45567899999999999999999999999999875553 22 234788999998887 55555 467899999 889
Q ss_pred ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCce
Q 001386 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1088)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 555 (1088)
..++.++.| ..|..+.|.|. --+|++++..|.++.-|+.+++.+..+....+.+..|+-+|-+..+-.|.. .+
T Consensus 201 tElHClk~~-~~v~rLeFLPy--HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----nG 273 (545)
T KOG1272|consen 201 TELHCLKRH-IRVARLEFLPY--HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----NG 273 (545)
T ss_pred cEEeehhhc-Cchhhhcccch--hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----Cc
Confidence 999988855 56777888654 357888999999999999999999988888889999999999888888764 67
Q ss_pred eEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCC
Q 001386 556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 635 (1088)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 635 (1088)
+|.+|.+...+.+..+..|. ++|.++++.++|.++++++.|..++|||++....+.++.... ....+++|..|
T Consensus 274 tVSlWSP~skePLvKiLcH~---g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~---~a~~ls~Sqkg- 346 (545)
T KOG1272|consen 274 TVSLWSPNSKEPLVKILCHR---GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH---PASNLSLSQKG- 346 (545)
T ss_pred eEEecCCCCcchHHHHHhcC---CCcceEEECCCCcEEeecccccceeEeeeccccccceeecCC---Ccccccccccc-
Confidence 79999999999998888888 999999999999999999999999999999888777665422 35678888766
Q ss_pred EEEEEeCCCcEEEEeCCCC-----CcccccccccCcceeeeecCCCcceeccccCC
Q 001386 636 LLAVIANENRIKILETPES-----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 686 (1088)
Q Consensus 636 ~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~ 686 (1088)
+||.+.. ..+.||.-... .....-......|..+.|.|.-..++++...|
T Consensus 347 lLA~~~G-~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 347 LLALSYG-DHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred ceeeecC-CeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 4444443 48999954322 11111122334788999999888888776665
No 239
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.8e-12 Score=146.72 Aligned_cols=234 Identities=20% Similarity=0.204 Sum_probs=150.8
Q ss_pred CCCchhheeecccCCCCceeeeecCCCCeEEEEEccc--CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCC
Q 001386 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1088)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~ 397 (1088)
.+..+...+.+..+...+.+.+|||||+.++.+...+ ..|.+||+.+|+... +....+
T Consensus 181 ~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g 240 (427)
T PRK02889 181 SDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKG 240 (427)
T ss_pred ECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCC
Confidence 3344555566777778999999999999644443332 459999999887543 222335
Q ss_pred CeEEEEECCCCCEEEE-EeCCCEEEEEEc--cCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe--C
Q 001386 398 SVNRVVWSPDGSLLGV-AYSKHIVQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD--A 472 (1088)
Q Consensus 398 ~V~~l~~s~dg~~las-~~~dg~i~vwd~--~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd--~ 472 (1088)
.+.+.+|||||+.|+. .+.++...||.+ .++. .+ .+..+...+....|+|||+.+ ++++..++...+|. +
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~l-~f~s~~~g~~~Iy~~~~ 315 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRSI-YFTSDRGGAPQIYRMPA 315 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCEE-EEEecCCCCcEEEEEEC
Confidence 5678999999999875 566776666654 4443 22 455566666788999999952 33333456666665 4
Q ss_pred CCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCC---eEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEee
Q 001386 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1088)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 549 (1088)
.+++.. .+..+........| +++|++|+..+.++ .|.+||+.+++...... ........|+|||+.|+....
T Consensus 316 ~~g~~~-~lt~~g~~~~~~~~--SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~ 390 (427)
T PRK02889 316 SGGAAQ-RVTFTGSYNTSPRI--SPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQ 390 (427)
T ss_pred CCCceE-EEecCCCCcCceEE--CCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEe
Confidence 455432 22222222334455 55778888776654 69999998776543322 223467899999999998876
Q ss_pred CCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeC
Q 001386 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1088)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1088)
.+ +...+++.+. ++...+.+..+. +.+...+|+|
T Consensus 391 ~~-g~~~l~~~~~-~g~~~~~l~~~~---g~~~~p~wsp 424 (427)
T PRK02889 391 QG-GRSVLAAVSS-DGRIKQRLSVQG---GDVREPSWGP 424 (427)
T ss_pred cC-CCEEEEEEEC-CCCceEEeecCC---CCCCCCccCC
Confidence 43 3566777777 455555565444 5566667776
No 240
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=7.2e-11 Score=126.97 Aligned_cols=539 Identities=10% Similarity=0.097 Sum_probs=321.6
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~ 415 (1088)
...|++|..... ++|+|+.||.+++-.+.+...-...+ .+.......-...+.||.+.|.-+.|+.+.+.|-+..
T Consensus 16 kL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~----glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 16 KLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKS----GLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred eEEEEEEcccCC-eEEeccccceeEEEEccccCCccccc----ccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence 678999999887 79999999999999987654221100 0111111222334899999999999999999999999
Q ss_pred CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee-EEeccCCccEEEEeee
Q 001386 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPVYSLCPH 494 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~ 494 (1088)
.+|.|.||-+-.|.-.... .-....+.|.+++|+.||. .+.....||.|.|=.++..+.- +.+++. ....+.|
T Consensus 91 t~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~w- 164 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLW- 164 (1189)
T ss_pred CCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchh--eccceee-
Confidence 9999999999887643321 1223456789999999999 5777777888776554432211 122221 1123444
Q ss_pred eeCCceEEEEEecCCeEEEEECCCCC-------ceE----EecCCCCceEEEEE--------ccCCCEEEEEeeCCCCce
Q 001386 495 AKENIHFIFSISVDGKIKAWLYDSLG-------ARV----DYDAPGLGCTRMAY--------SANGRRLFSCGTSKEGES 555 (1088)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~-------~~~----~~~~~~~~v~~~~~--------s~~g~~l~~~~~~~~~~~ 555 (1088)
++|.+.++.+-..|.+.++|.+..- +.. .+......+..+.| -||...++++.. ++
T Consensus 165 -s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~----nG 239 (1189)
T KOG2041|consen 165 -SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA----NG 239 (1189)
T ss_pred -cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc----Cc
Confidence 4566777778888999999865321 111 11112223444444 257778888765 33
Q ss_pred eEEEEeCCC-CceeEEEeccccccccEEEEEEeCCCCEEEEEeCC---------CcEEEEEcCCCeeeEEEeCCCCCCCC
Q 001386 556 FLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1088)
Q Consensus 556 ~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1088)
.+.+....+ ..++-.-.+ ..+..+.|+++|..++.++.+ +.|.++.. -|..+.+++..+. .|
T Consensus 240 r~QiMR~eND~~Pvv~dtg-----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~--~I 311 (1189)
T KOG2041|consen 240 RMQIMRSENDPEPVVVDTG-----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGS--CI 311 (1189)
T ss_pred eehhhhhcCCCCCeEEecc-----cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCc--ee
Confidence 344443222 222222222 357888999999999998743 24555553 5777888876654 58
Q ss_pred ceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccc
Q 001386 626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 705 (1088)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 705 (1088)
++++|-..|-.+|.+- |+.|.+=++...-....+. + .+.+... .++ .
T Consensus 312 t~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy~e---~---------------------TvVy~y~-~~e-------~ 358 (1189)
T KOG2041|consen 312 TGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGYIE---E---------------------TVVYVYQ-KEE-------L 358 (1189)
T ss_pred eeeEEcCCceEEEEEe-cceEEEEeecccceEEEee---e---------------------EEEEEEc-cCC-------C
Confidence 9999988887777664 5678776666432111110 0 0000000 000 0
Q ss_pred cCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCC
Q 001386 706 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGP 785 (1088)
Q Consensus 706 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1088)
....|..||....+.... .-....+++++.+--.|+.-..+|.+.-++--.+ .-++|-.
T Consensus 359 p~y~i~Fwdtk~nek~vK---------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~--------~~~~~~l---- 417 (1189)
T KOG2041|consen 359 PQYGIMFWDTKTNEKTVK---------TVTHFENMAFYREHCVLINRQDDGVIPEYSTLEN--------RSRVYFL---- 417 (1189)
T ss_pred cceEEEEEecccChhhhh---------hhcceeehheecccEEEEeccccCCCcchhhhhc--------ccceEEE----
Confidence 012466777543322111 1123446667666655666666666554421000 0011100
Q ss_pred cceeeccCCCCCC---CCeeEEEEecCCCEEEEEeCCcEEEEEcCCcee-------------------------------
Q 001386 786 QFMVNDTTDSNSQ---EAVPCFALSKNDAYLFSASGGVISLYIVMTFKT------------------------------- 831 (1088)
Q Consensus 786 ~~~~~~~~~~~~~---~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~------------------------------- 831 (1088)
++...+ +..-. ..|...-+.-++.+++.++...+.+|.....+.
T Consensus 418 -~LCNSI-GT~lD~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~y 495 (1189)
T KOG2041|consen 418 -QLCNSI-GTSLDYKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEY 495 (1189)
T ss_pred -eeeccc-CCcCCCCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeec
Confidence 000000 00011 122222233477888888888888887532110
Q ss_pred -EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEE
Q 001386 832 -ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 910 (1088)
Q Consensus 832 -~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd 910 (1088)
..++.+..++|.+++.+. ++|.++-..|.|+-|++.+..+..... -+..|++++++-+...+|....-|.+.+.|
T Consensus 496 s~kt~~G~~DpICAl~~sd---k~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv~tf~d 571 (1189)
T KOG2041|consen 496 STKTLLGSKDPICALCISD---KFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGVVTFQD 571 (1189)
T ss_pred cceeeccCCCcceeeeecc---eEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhceeeeee
Confidence 123445667888888863 799999999999999999887766655 445689999988888999888889999998
Q ss_pred cCCCcee-eeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeC-CeEEEEEcCcc
Q 001386 911 VDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE-THLAIYEAEEL 963 (1088)
Q Consensus 911 ~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d-~~i~vwd~~~~ 963 (1088)
++-.... ....+...+. ..|+.+.|..|+..+++-.+ ..+++++-.+.
T Consensus 572 Ld~d~~g~ql~~~~~~er-----rDVWd~~Wa~dNp~llAlmeKtrmyifrgndp 621 (1189)
T KOG2041|consen 572 LDYDFDGDQLKLIYTSER-----RDVWDYEWAQDNPNLLALMEKTRMYIFRGNDP 621 (1189)
T ss_pred cccccCcceeeeeehhhh-----hhhhhhhhccCCchHHhhhhhceEEEecCcCc
Confidence 8731111 1111222211 25899999999887777444 46888875543
No 241
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.50 E-value=3.7e-10 Score=124.00 Aligned_cols=211 Identities=13% Similarity=0.178 Sum_probs=138.5
Q ss_pred CeeEEEEecCCCEEEEEe--CCcEEEEEcCC-ceeEEE---ec----------CCCCCeEEEEEcCCCCcEEEEEe-CCC
Q 001386 800 AVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT---IM----------PPSPTATSLAFNPHDNNVIAIGM-DDS 862 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~--dg~i~iwd~~~-~~~~~~---~~----------~~~~~i~~l~~sp~d~~~lasg~-~dg 862 (1088)
....++++|++++|+++. +|.|.++++.. +..... +. .......++.|+| +++++++.. ...
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D 166 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGAD 166 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTT
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCC
Confidence 445678888888888886 67888888876 333222 11 1235678999999 788777654 334
Q ss_pred eEEEEEcCCce--ee--eeec-cccCCeeEEEECCCCCEEEEEe-CCCcEEEEEcC--CCceeeeeeeecCCCCccCCCC
Q 001386 863 TILIYNARSSE--VI--SKLE-GHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPS 934 (1088)
Q Consensus 863 ~i~lwd~~~~~--~~--~~l~-~h~~~V~~l~~s~dg~~las~s-~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~ 934 (1088)
.|++|++.... +. ..+. ........++|+||++++.... .+++|.++++. .+.......+............
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence 89999997654 31 2222 2334578999999999987665 57889999998 5544444444443222211125
Q ss_pred eEEEEEcCCCCEEEEE--eCCeEEEEEcC--ccee--eeeeecCCCcCEEEEEEeeCCCEEEEEe-CCCcEEEEEc--CC
Q 001386 935 ETHIQFHKDQTRFLLV--HETHLAIYEAE--ELTC--LKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEA--SN 1005 (1088)
Q Consensus 935 v~~~~fs~dg~~l~~~--~d~~i~vwd~~--~~~~--~~~~~~~h~~~v~~l~fs~dg~~l~s~s-~dg~v~vwd~--~~ 1005 (1088)
...++++|||++|.++ ..+.|.+|++. +|+. +..+. ......+.++|+|||++|+++. .++.|.+|++ .+
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~-~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t 325 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP-TGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT 325 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE-ESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe-CCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence 7899999999999996 45689999983 3433 22222 2245589999999999999887 5578999866 57
Q ss_pred CceEEEe
Q 001386 1006 LEVQCRI 1012 (1088)
Q Consensus 1006 ~~~~~~~ 1012 (1088)
|.+....
T Consensus 326 G~l~~~~ 332 (345)
T PF10282_consen 326 GKLTPVG 332 (345)
T ss_dssp TEEEEEE
T ss_pred CcEEEec
Confidence 7765443
No 242
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=4e-12 Score=143.78 Aligned_cols=223 Identities=14% Similarity=0.114 Sum_probs=145.6
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCC---CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEE
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~d---g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~ 468 (1088)
+..+...+.+.+|||||+.||.++.+ ..|.+||+.+++... +....+.+.+.+|+|||+. ++++.+.++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 265 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ 265 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence 44577889999999999999987643 459999999886432 3334455678999999995 344667788766
Q ss_pred EEe--CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEec-CCeEEEEECC--CCCceEEecCCCCceEEEEEccCCCE
Q 001386 469 VWD--AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYD--SLGARVDYDAPGLGCTRMAYSANGRR 543 (1088)
Q Consensus 469 vwd--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s~~g~~ 543 (1088)
+|. +.++. +..+..+........| ++||+.++..+. +|...+|.++ .+.... +..........+|||||++
T Consensus 266 Iy~~d~~~~~-~~~lt~~~~~~~~~~w--SpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~SpDG~~ 341 (427)
T PRK02889 266 IYTVNADGSG-LRRLTQSSGIDTEPFF--SPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRISPDGKL 341 (427)
T ss_pred EEEEECCCCC-cEECCCCCCCCcCeEE--cCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCceEECCCCCE
Confidence 665 44444 4556555555556666 557777765554 4666777654 333222 2222333446789999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCC---cEEEEEcCCCeeeEEEeCCC
Q 001386 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTIDAGG 620 (1088)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~~~~ 620 (1088)
++..+..+ +...|++||+.+++......+ .......|+|||+.|+.++.++ .+.+.+. ++.....+..+.
T Consensus 342 Ia~~s~~~-g~~~I~v~d~~~g~~~~lt~~-----~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~ 414 (427)
T PRK02889 342 LAYISRVG-GAFKLYVQDLATGQVTALTDT-----TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQG 414 (427)
T ss_pred EEEEEccC-CcEEEEEEECCCCCeEEccCC-----CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCC
Confidence 99876432 345799999998875443222 1235678999999998877544 3555565 455555554332
Q ss_pred CCCCCceEEEec
Q 001386 621 GLPENPRICFNK 632 (1088)
Q Consensus 621 ~~~~v~~v~~s~ 632 (1088)
+ .+...+|+|
T Consensus 415 g--~~~~p~wsp 424 (427)
T PRK02889 415 G--DVREPSWGP 424 (427)
T ss_pred C--CCCCCccCC
Confidence 2 356677776
No 243
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=8.8e-11 Score=123.98 Aligned_cols=132 Identities=13% Similarity=0.184 Sum_probs=100.9
Q ss_pred CeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEE--eCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEE
Q 001386 862 STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS--GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 939 (1088)
Q Consensus 862 g~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~--s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 939 (1088)
.++++.++....++-.+. ..++|.++.|+|+|+-++.+ -.-..+.|+|++. .......+|. -.++.
T Consensus 251 q~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-----~~v~df~egp------RN~~~ 318 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-----KPVFDFPEGP------RNTAF 318 (566)
T ss_pred ceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-----CEeEeCCCCC------ccceE
Confidence 478888888445554554 57999999999999876654 3456799999987 3345555554 35899
Q ss_pred EcCCCCEEEE-Ee---CCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeC------CCcEEEEEcCCCce
Q 001386 940 FHKDQTRFLL-VH---ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFV------DGTLSIHEASNLEV 1008 (1088)
Q Consensus 940 fs~dg~~l~~-~~---d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~------dg~v~vwd~~~~~~ 1008 (1088)
|+|.|++|+. |. .|.+.|||+.+.+++..+.. ..-+-+.|+|||++++|++. |+.++||+.....+
T Consensus 319 fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a---~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 319 FNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA---ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred ECCCCCEEEEeecCCCCCceEEEeccchhhcccccc---CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCcee
Confidence 9999999998 43 36899999999888877553 34566799999999998876 68899999875443
No 244
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.49 E-value=1.1e-10 Score=121.66 Aligned_cols=365 Identities=12% Similarity=0.153 Sum_probs=227.5
Q ss_pred EEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCE
Q 001386 513 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 592 (1088)
Q Consensus 513 iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 592 (1088)
+|...+......+....-++..+++||.|.+|++.... .|.+|....+..+..+.. ..|..+.|+|.+++
T Consensus 16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-----~V~~~~g~~~~~l~~~~~-----~~V~~~~fSP~~kY 85 (561)
T COG5354 16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-----GVECWGGPSKAKLVRFRH-----PDVKYLDFSPNEKY 85 (561)
T ss_pred eecCccccccccccccCcchhheeecCcchheehhhcc-----ceEEccccchhheeeeec-----CCceecccCcccce
Confidence 45444444444455566688899999999999987643 399999887776666654 46899999999999
Q ss_pred EEEEeCCC---------------cEEEEEcCCCeeeEEEeCCCCCCCCc-eEEEecCCCEEEEEeCCCcEEEEeCCCCCc
Q 001386 593 ILAAGDDH---------------VIKIWDMNKVQLLTTIDAGGGLPENP-RICFNKNGTLLAVIANENRIKILETPESNS 656 (1088)
Q Consensus 593 l~~~s~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 656 (1088)
|.+-+..+ .+.+||..+|..+..+.......... -+.|+-+.+++|-.. ...+.|+++...-.
T Consensus 86 L~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~t~n~~ 164 (561)
T COG5354 86 LVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEITDNIE 164 (561)
T ss_pred eeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEecCCccc
Confidence 99866433 49999999999999887654322233 688999888877663 34789998732211
Q ss_pred ccccccc-cCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccc
Q 001386 657 VDAAGVL-SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN 735 (1088)
Q Consensus 657 ~~~~~~~-~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 735 (1088)
...+... ...+....++|.+.. ..+..|-
T Consensus 165 ~~p~~~lr~~gi~dFsisP~~n~-----------------------------~~la~~t--------------------- 194 (561)
T COG5354 165 EHPFKNLRPVGILDFSISPEGNH-----------------------------DELAYWT--------------------- 194 (561)
T ss_pred cCchhhccccceeeEEecCCCCC-----------------------------ceEEEEc---------------------
Confidence 1111110 122333333322100 0011111
Q ss_pred cEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEE
Q 001386 736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 815 (1088)
Q Consensus 736 ~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 815 (1088)
|. ..+..+.+++|.++.+.. +.+..+ ....-..+.|.+.|+++.+
T Consensus 195 --------PE-----k~~kpa~~~i~sIp~~s~------------------l~tk~l----fk~~~~qLkW~~~g~~ll~ 239 (561)
T COG5354 195 --------PE-----KLNKPAMVRILSIPKNSV------------------LVTKNL----FKVSGVQLKWQVLGKYLLV 239 (561)
T ss_pred --------cc-----cCCCCcEEEEEEccCCCe------------------eeeeee----EeecccEEEEecCCceEEE
Confidence 11 012345556665543322 111111 1111223556666666553
Q ss_pred Ee------------CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEE--EeCCCeEEEEEcCCceeeeeeccc
Q 001386 816 AS------------GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI--GMDDSTILIYNARSSEVISKLEGH 881 (1088)
Q Consensus 816 ~~------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las--g~~dg~i~lwd~~~~~~~~~l~~h 881 (1088)
-- ...+.|+++..... .......++|...+|.| .++.+++ |-.+-.+.++|++.. +...+ .
T Consensus 240 l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--P 314 (561)
T COG5354 240 LVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWEP-LSSRFAVISGYMPASVSVFDLRGN-LRFYF--P 314 (561)
T ss_pred EEEEeeecccceeccceEEEEeeccccc-ceeccccccceeeeecc-cCCceeEEecccccceeecccccc-eEEec--C
Confidence 21 24588888874333 33335678999999999 4544443 457889999999865 44333 3
Q ss_pred cCCeeEEEECCCCCEEEEEeCC---CcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-------e
Q 001386 882 SKRVTGLVFSDALNILVSSGGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-------H 951 (1088)
Q Consensus 882 ~~~V~~l~~s~dg~~las~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-------~ 951 (1088)
...=+.+.|||.+++++.++-| |.+-+||..+.- .++....+. ..+-+.|+|||.++.+. .
T Consensus 315 e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf----~~~~~~~~~-----n~s~~~wspd~qF~~~~~ts~k~~~ 385 (561)
T COG5354 315 EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF----KVAGAFNGL-----NTSYCDWSPDGQFYDTDTTSEKLRV 385 (561)
T ss_pred CcccccccccCcccEEEEecCCccccceEEeccCCce----EEEEEeecC-----CceEeeccCCceEEEecCCCccccc
Confidence 3444678999999999998876 679999988743 233233332 24567899999999883 3
Q ss_pred CCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCC
Q 001386 952 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 996 (1088)
Q Consensus 952 d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg 996 (1088)
|..+.|||+...... ..+.+.|.|.|++..+.+.+.
T Consensus 386 Dn~i~l~~v~g~~~f---------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 386 DNSIKLWDVYGAKVF---------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred CcceEEEEecCchhh---------hhhhccccCCcccceeeccCC
Confidence 678999998744332 356678888888887777664
No 245
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.49 E-value=1.6e-13 Score=140.18 Aligned_cols=273 Identities=18% Similarity=0.175 Sum_probs=210.3
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~ 415 (1088)
.-..+.|+.+|++ ++.|+..|.+-.+|+.++++..... -...|.++.|-.+..++|++
T Consensus 131 GPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~--------------------v~Etv~Dv~~LHneq~~AVA- 188 (545)
T KOG1272|consen 131 GPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEIN--------------------VMETVRDVTFLHNEQFFAVA- 188 (545)
T ss_pred CCeeeeecCCccE-EEecCCccceeeeecccceeeeeee--------------------hhhhhhhhhhhcchHHHHhh-
Confidence 5678899999995 5666677999999999998876533 23678899999999999987
Q ss_pred CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeee
Q 001386 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 495 (1088)
....++|||-..-+ +. .++.| ..|..+.|.|-.- +|++++..|.++.-|+.+|+.+..+....+.+..++-+|
T Consensus 189 QK~y~yvYD~~GtE-lH---Clk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 189 QKKYVYVYDNNGTE-LH---CLKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred hhceEEEecCCCcE-Ee---ehhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence 45569999976532 33 34444 4789999999765 899999999999999999999999988888888887754
Q ss_pred eCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccc
Q 001386 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1088)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1088)
- ...+-+|...|+|.+|.....+....+..|.++|.++++.++|+++++.+. +..+.|||++.-..+.++.. .
T Consensus 262 ~--NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~t-p 334 (545)
T KOG1272|consen 262 Y--NAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRT-P 334 (545)
T ss_pred c--cceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeec-C
Confidence 4 358889999999999999999999999999999999999999999999987 44599999998877666665 2
Q ss_pred cccccEEEEEEeCCCCEEEEEeCCCcEEEEEc-CCCe--eeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEE
Q 001386 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM-NKVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 649 (1088)
Q Consensus 576 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~-~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 649 (1088)
.....+++|..| +++++....+.||.- -.+. ....+-.|.....|..+.|.|-...|-+|...|.-.+.
T Consensus 335 ---~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 335 ---HPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred ---CCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEe
Confidence 356777888655 555555667999952 2211 11122222223368899999977777777666544443
No 246
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.48 E-value=6.9e-13 Score=138.15 Aligned_cols=153 Identities=18% Similarity=0.198 Sum_probs=115.5
Q ss_pred CCceeeeecCCCCeEEEEEcccCcEEEEecCCCccee-----------eeceeeeeeccccccceeeeecCCCCCeEEEE
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF-----------IRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~-----------~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1088)
..|+|+.|-|.+..++.++-.+|.+.++|..----.. .+.+-.|.-+....+ ...+.--++.|..++
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNP--v~~w~~~~g~in~f~ 297 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNP--VARWHIGEGSINEFA 297 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCc--cceeEecccccccee
Confidence 5899999999877777778888999999863211000 011111111111011 111222345899999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEecc
Q 001386 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1088)
Q Consensus 404 ~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~ 483 (1088)
|||||++||+.+.||.++|+|..+.+.+. ..+.--+...|++|||||+ +|++|++|.-|.||.+..++.+..=.+
T Consensus 298 FS~DG~~LA~VSqDGfLRvF~fdt~eLlg---~mkSYFGGLLCvcWSPDGK--yIvtGGEDDLVtVwSf~erRVVARGqG 372 (636)
T KOG2394|consen 298 FSPDGKYLATVSQDGFLRIFDFDTQELLG---VMKSYFGGLLCVCWSPDGK--YIVTGGEDDLVTVWSFEERRVVARGQG 372 (636)
T ss_pred EcCCCceEEEEecCceEEEeeccHHHHHH---HHHhhccceEEEEEcCCcc--EEEecCCcceEEEEEeccceEEEeccc
Confidence 99999999999999999999999977655 2334446799999999999 899999999999999999999999999
Q ss_pred CCccEEEEeee
Q 001386 484 HGAPVYSLCPH 494 (1088)
Q Consensus 484 ~~~~v~~~~~~ 494 (1088)
|..+|..++|.
T Consensus 373 HkSWVs~VaFD 383 (636)
T KOG2394|consen 373 HKSWVSVVAFD 383 (636)
T ss_pred cccceeeEeec
Confidence 99999999996
No 247
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=6.1e-12 Score=126.51 Aligned_cols=273 Identities=13% Similarity=0.121 Sum_probs=194.2
Q ss_pred CCCceeeeecCCCCeEEEEEc-ccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEE
Q 001386 334 SSSPMSMDFHPVQHTLLLVGT-NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1088)
Q Consensus 334 ~~~V~~v~~spdg~~lla~g~-~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~la 412 (1088)
.+.|..++|--|++.=+..+. .|..+............. .||++ .......+|..++.. ...|+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~--dg~Li 119 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA--DGTLI 119 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc--CCEEE
Confidence 347888888766654333333 555666666655544432 12221 133345677777665 34667
Q ss_pred EEeCCCEEEEEEccCCCcc-cceeEeccCCCCEEEEEecCCCCcEEEEEEeCC--CcEEEEeCCCCceeEEeccC-----
Q 001386 413 VAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD--KTIKVWDAVTGSRTYSFEGH----- 484 (1088)
Q Consensus 413 s~~~dg~i~vwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d--~~i~vwd~~~~~~~~~~~~~----- 484 (1088)
+|-.+|.+.+|..+.+..- .....+..+ ..+..+.-++.... ++++|+.. ..+++||+++.+.+.+-+.-
T Consensus 120 tc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred EEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 7788999999999855311 111123333 45677777777765 67779988 88999999988666544321
Q ss_pred ----CccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc-eEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001386 485 ----GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1088)
Q Consensus 485 ----~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 559 (1088)
.-+++++.|.+......|++++.-+.+++||.+.++. +..+.....+++++...|+|+.++++.. .+.+..
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~~ 273 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLAK 273 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhhe
Confidence 1235566676554467999999999999999987654 5578888889999999999999999865 555999
Q ss_pred EeCCCCceeEE-EeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecC
Q 001386 560 WNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1088)
Q Consensus 560 wd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1088)
+|.++++.... +.+.. +.++++..+|..+++++++-|..+||+|+.+.+++...-.... .+++.+.++
T Consensus 274 FD~r~~kl~g~~~kg~t---Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~---lt~il~~~~ 342 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGIT---GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSR---LTFILLRDD 342 (412)
T ss_pred ecccCceeeccccCCcc---CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhcc---ccEEEecCC
Confidence 99999998877 77777 8999999999999999999999999999999777766554433 456665543
No 248
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=5.9e-12 Score=143.37 Aligned_cols=233 Identities=15% Similarity=0.103 Sum_probs=154.1
Q ss_pred CCCchhheeecccCCCCceeeeecCCCCeEEEEEc--ccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCC
Q 001386 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1088)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~ 397 (1088)
.+......+.|..|...+.+.+|||||++++.+.. .+..|.+||+.+|+... +..+.+
T Consensus 187 ~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~~~g 246 (435)
T PRK05137 187 MDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGNFPG 246 (435)
T ss_pred ECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eecCCC
Confidence 33445566778888889999999999996444432 24689999999886542 334566
Q ss_pred CeEEEEECCCCCEEEEE-eCCC--EEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEe-CCC--cEEEEe
Q 001386 398 SVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDK--TIKVWD 471 (1088)
Q Consensus 398 ~V~~l~~s~dg~~las~-~~dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s-~d~--~i~vwd 471 (1088)
.+.+.+|||||+.|+.. +.++ .|.+||+.+++.. .+..+.......+|+|||+. ++..+ .++ .|.+||
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy~~d 320 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLYVMN 320 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEEEEE
Confidence 77889999999988754 4444 4788898887542 35566666778999999995 44444 333 688889
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecC---CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 548 (1088)
+.+++.. .+..+...+....| +++|+.|+..+.+ ..|.+||+...... .+.. ...+..+.|+|||+.|+..+
T Consensus 321 ~~g~~~~-~lt~~~~~~~~~~~--SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~-~~~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 321 ADGSNPR-RISFGGGRYSTPVW--SPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTS-GFLVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred CCCCCeE-EeecCCCcccCeEE--CCCCCEEEEEEcCCCceEEEEEECCCCceE-eccC-CCCCCCCeECCCCCEEEEEE
Confidence 7766543 44334445555666 4577788776543 35788887654432 2222 23567789999999998876
Q ss_pred eCCCCc--eeEEEEeCCCCceeEEEeccccccccEEEEEEeC
Q 001386 549 TSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1088)
Q Consensus 549 ~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1088)
...... ..++++|+..+.. +.+.. . +.+...+|+|
T Consensus 396 ~~~~~~~~~~L~~~dl~g~~~-~~l~~-~---~~~~~p~Wsp 432 (435)
T PRK05137 396 QTPGSGGAPKLYTVDLTGRNE-REVPT-P---GDASDPAWSP 432 (435)
T ss_pred ccCCCCCcceEEEEECCCCce-EEccC-C---CCccCcccCC
Confidence 533221 4688888876554 33332 2 3355556665
No 249
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=1.3e-11 Score=129.83 Aligned_cols=284 Identities=17% Similarity=0.204 Sum_probs=190.4
Q ss_pred cCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccC-CccEEEEeeeeeCCceEEEEEecCCeEEEEECC
Q 001386 439 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH-GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517 (1088)
Q Consensus 439 ~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 517 (1088)
.|...-+.|..+|||++ ++++|...-.|++||+.+-... |..| ...+..+.+. +.|-..++.-..|++|.+...-
T Consensus 49 e~p~ast~ik~s~DGqY-~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiL-sDD~SK~v~L~~DR~IefHak~ 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQY-LLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEIL-SDDYSKSVFLQNDRTIEFHAKY 124 (703)
T ss_pred CCccccceeEecCCCcE-EEEecccCCceEEEEcccceee--eeecccccceeEEEe-ccchhhheEeecCceeeehhhc
Confidence 46677889999999997 7888989999999998875543 3333 2233322221 2233344555566666554211
Q ss_pred CCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEe
Q 001386 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 597 (1088)
Q Consensus 518 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s 597 (1088)
........ ......|+++.-..-|++++... .|+-+++..|+.+..+.... +.++++..++....|++|+
T Consensus 125 --G~hy~~RI-P~~GRDm~y~~~scDly~~gsg~----evYRlNLEqGrfL~P~~~~~---~~lN~v~in~~hgLla~Gt 194 (703)
T KOG2321|consen 125 --GRHYRTRI-PKFGRDMKYHKPSCDLYLVGSGS----EVYRLNLEQGRFLNPFETDS---GELNVVSINEEHGLLACGT 194 (703)
T ss_pred --Ceeeeeec-CcCCccccccCCCccEEEeecCc----ceEEEEcccccccccccccc---ccceeeeecCccceEEecc
Confidence 11111111 11223455554343444444322 29999999999999988776 8999999999999999999
Q ss_pred CCCcEEEEEcCCCeeeEEEeCCCC---------CCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcce
Q 001386 598 DDHVIKIWDMNKVQLLTTIDAGGG---------LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLR 668 (1088)
Q Consensus 598 ~dg~i~iwd~~~~~~~~~~~~~~~---------~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 668 (1088)
.+|.|..||.++...+.++..... .+.|+++.|+.+|-.+++|+.+|.+.|||+.+.+++....
T Consensus 195 ~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd------- 267 (703)
T KOG2321|consen 195 EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD------- 267 (703)
T ss_pred cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc-------
Confidence 999999999998877777654322 2346777787777778888888888888877553321110
Q ss_pred eeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCce
Q 001386 669 KLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQA 748 (1088)
Q Consensus 669 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 748 (1088)
T Consensus 268 -------------------------------------------------------------------------------- 267 (703)
T KOG2321|consen 268 -------------------------------------------------------------------------------- 267 (703)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecC--CCEEEEEeCCcEEEEEc
Q 001386 749 IFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN--DAYLFSASGGVISLYIV 826 (1088)
Q Consensus 749 l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--g~~l~~~~dg~i~iwd~ 826 (1088)
.+..-+|..+.|-+. +..+++.....++|||-
T Consensus 268 ----------------------------------------------h~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~ 301 (703)
T KOG2321|consen 268 ----------------------------------------------HGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDE 301 (703)
T ss_pred ----------------------------------------------cCCccceeeecccccCCCceEEecchHHhhhccc
Confidence 012223444444332 45677777788999999
Q ss_pred CCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC
Q 001386 827 MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 871 (1088)
Q Consensus 827 ~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~ 871 (1088)
.+|+....+. +...+..+|+-| ++-++++|..++.+..|=+..
T Consensus 302 ~~Gk~~asiE-pt~~lND~C~~p-~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 302 CTGKPMASIE-PTSDLNDFCFVP-GSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred ccCCceeecc-ccCCcCceeeec-CCceEEEecCCCcceeEEccc
Confidence 9999988887 445599999999 778999999998887776654
No 250
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=9e-11 Score=123.08 Aligned_cols=327 Identities=13% Similarity=0.176 Sum_probs=201.6
Q ss_pred ceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEe-----------CC
Q 001386 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-----------DD 599 (1088)
Q Consensus 531 ~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-----------~d 599 (1088)
.-+-+.|||.|.+|++-...| |.+|-..+...++.+.. ..|.-+.|||..+||++-+ +.
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-----I~lWGG~~f~r~~RF~H-----p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~ 281 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-----IALWGGESFDRIQRFYH-----PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEG 281 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-----eeeecCccHHHHHhccC-----CCceeeecCCccceEEEecCCccccCcccCCC
Confidence 345689999999999987543 99998777766666654 3588899999999999955 22
Q ss_pred CcEEEEEcCCCeeeEEEeCCC-CCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcc
Q 001386 600 HVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 678 (1088)
Q Consensus 600 g~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 678 (1088)
..++|||+.+|.....+.... ....-.-..||.|++++|.-..+ .|.||+..+-.++.....
T Consensus 282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Ksl---------------- 344 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSL---------------- 344 (698)
T ss_pred ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeeccccc----------------
Confidence 579999999999998887632 22233467899999999988774 788887664221111000
Q ss_pred eeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccce
Q 001386 679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH 758 (1088)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v 758 (1088)
....|....|+|.+..|+.-...
T Consensus 345 ------------------------------------------------------ki~gIr~FswsP~~~llAYwtpe--- 367 (698)
T KOG2314|consen 345 ------------------------------------------------------KISGIRDFSWSPTSNLLAYWTPE--- 367 (698)
T ss_pred ------------------------------------------------------CCccccCcccCCCcceEEEEccc---
Confidence 12234445555554433321110
Q ss_pred EEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCC
Q 001386 759 LMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP 838 (1088)
Q Consensus 759 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~ 838 (1088)
+.. .. ..+.+..+.+++.+++..-+
T Consensus 368 ------------------------~~~-----------~p--------------------arvtL~evPs~~~iRt~nlf 392 (698)
T KOG2314|consen 368 ------------------------TNN-----------IP--------------------ARVTLMEVPSKREIRTKNLF 392 (698)
T ss_pred ------------------------ccC-----------Cc--------------------ceEEEEecCccceeeeccce
Confidence 000 01 12333334444444433322
Q ss_pred CCCeEEEEEcCCCCcEEEEE----------eCCCeEEEEEcCCcee-eeeeccccCCeeEEEECCCCCEEEEEeC---CC
Q 001386 839 SPTATSLAFNPHDNNVIAIG----------MDDSTILIYNARSSEV-ISKLEGHSKRVTGLVFSDALNILVSSGG---DA 904 (1088)
Q Consensus 839 ~~~i~~l~~sp~d~~~lasg----------~~dg~i~lwd~~~~~~-~~~l~~h~~~V~~l~~s~dg~~las~s~---Dg 904 (1088)
.-.-..+-|-. +|.+|+.- +.-..+.|+.++.... +..+. -...|...+|-|.|..+++.+. ..
T Consensus 393 nVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~ 470 (698)
T KOG2314|consen 393 NVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKN 470 (698)
T ss_pred eeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEcccccc
Confidence 22223344444 45555532 1112455665554432 22222 4567888999999988877654 35
Q ss_pred cEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE----eCCeEEEEEcCcceeeeeeecCCCcCEEEE
Q 001386 905 QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HETHLAIYEAEELTCLKQWFPISSVPISQA 980 (1088)
Q Consensus 905 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~----~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l 980 (1088)
++.+|.+++.. .....+..++.. ....+.|||.|++++++ ..|.+..+|+.-..+...-...| ...+.+
T Consensus 471 tvsfY~~e~~~-~~~~lVk~~dk~-----~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~v 543 (698)
T KOG2314|consen 471 TVSFYAVETNI-KKPSLVKELDKK-----FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEV 543 (698)
T ss_pred ceeEEEeecCC-Cchhhhhhhccc-----ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccc
Confidence 78999988521 223344444432 35799999999999983 46789999988544444333333 345678
Q ss_pred EEeeCCCEEEEEeCC------CcEEEEEcCC
Q 001386 981 TFSCDCRMVFTSFVD------GTLSIHEASN 1005 (1088)
Q Consensus 981 ~fs~dg~~l~s~s~d------g~v~vwd~~~ 1005 (1088)
.|.|.|+|++|+++- ...++|++..
T Consensus 544 eWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 544 EWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred eECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 999999999999864 4456666553
No 251
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=6.6e-10 Score=112.02 Aligned_cols=281 Identities=11% Similarity=0.107 Sum_probs=186.3
Q ss_pred CccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEecc---ccceEEEEccCCCCCCCCCCCCcccCCCC
Q 001386 707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS---NGVHLMWRWPRNDLTLSTEVPPRLYQPRH 783 (1088)
Q Consensus 707 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~~ 783 (1088)
+..|.+|+++......... .........+-+++++++++|.++.. .|.+..|.++.. +
T Consensus 15 s~gI~v~~ld~~~g~l~~~---~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~----------------~ 75 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLL---QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPD----------------D 75 (346)
T ss_pred CCceEEEEEeCcccccchh---hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCC----------------C
Confidence 4678888876432221111 11225567888999999999988765 477777776542 2
Q ss_pred CCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe--CCcEEEEEcCC-ceeEEE--ecCCCCC----------eEEEEEc
Q 001386 784 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT--IMPPSPT----------ATSLAFN 848 (1088)
Q Consensus 784 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--dg~i~iwd~~~-~~~~~~--~~~~~~~----------i~~l~~s 848 (1088)
|.......... ...+.+-++++++|++++++. .|.|.++-+.. |..... ...|.+. +....|.
T Consensus 76 G~Lt~ln~~~~--~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~t 153 (346)
T COG2706 76 GRLTFLNRQTL--PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFT 153 (346)
T ss_pred CeEEEeecccc--CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeC
Confidence 32122221211 233448899999999999997 68899999865 433221 1123333 7888999
Q ss_pred CCCCcEEEEEeCC-CeEEEEEcCCceeeeeec---cccCCeeEEEECCCCCEEEEEe-CCCcEEEEEcCC--Cceeeeee
Q 001386 849 PHDNNVIAIGMDD-STILIYNARSSEVISKLE---GHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDG--WGIQTCRS 921 (1088)
Q Consensus 849 p~d~~~lasg~~d-g~i~lwd~~~~~~~~~l~---~h~~~V~~l~~s~dg~~las~s-~Dg~i~iwd~~~--~~~~~~~~ 921 (1088)
| ++++|++.+-. -.|.+|++..|++...-. .....-+.|+|+|++++..... -+++|.+|..+. ++......
T Consensus 154 P-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~ 232 (346)
T COG2706 154 P-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQT 232 (346)
T ss_pred C-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeee
Confidence 9 88888876432 379999999886532211 2334568899999999987766 489999999988 45444444
Q ss_pred eecCCCCccCCCCeEEEEEcCCCCEEEEEeC--CeEEEEEcCc--cee-eeeeecCCCcCEEEEEEeeCCCEEEEEeCC-
Q 001386 922 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHE--THLAIYEAEE--LTC-LKQWFPISSVPISQATFSCDCRMVFTSFVD- 995 (1088)
Q Consensus 922 ~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d--~~i~vwd~~~--~~~-~~~~~~~h~~~v~~l~fs~dg~~l~s~s~d- 995 (1088)
+..+........+...+.+++||++|.++.. +.|.+|.+.. ++. +......+....+...|+++|++|+++..+
T Consensus 233 i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s 312 (346)
T COG2706 233 IDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKS 312 (346)
T ss_pred eccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCC
Confidence 4444444443456789999999999999744 4688887653 332 222233445667889999999999988865
Q ss_pred CcEEEEEc--CCCceE
Q 001386 996 GTLSIHEA--SNLEVQ 1009 (1088)
Q Consensus 996 g~v~vwd~--~~~~~~ 1009 (1088)
..|.||.. .+|++.
T Consensus 313 d~i~vf~~d~~TG~L~ 328 (346)
T COG2706 313 DNITVFERDKETGRLT 328 (346)
T ss_pred CcEEEEEEcCCCceEE
Confidence 46888855 455543
No 252
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.42 E-value=1.6e-09 Score=114.72 Aligned_cols=200 Identities=12% Similarity=0.093 Sum_probs=131.6
Q ss_pred EEEEecCCCEEEEEe---CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-ceee-e-
Q 001386 803 CFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVI-S- 876 (1088)
Q Consensus 803 ~~~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~-~~~~-~- 876 (1088)
.++++|||+++.+.. +..|.+.|+.+++.+.++.... ...-...+. +..+ +-+.||......+.+ |+.. .
T Consensus 109 ~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~~~--~~~~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 109 MTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DTFF--MHCRDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred eEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-CccE--EEeecCceEEEEecCCCceEEee
Confidence 578899999888775 6789999999999998887543 222222322 2222 223455444433322 2211 1
Q ss_pred --eecc-----ccCCeeEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCc----cCCCCeEEEEEcCCC
Q 001386 877 --KLEG-----HSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM----TLAPSETHIQFHKDQ 944 (1088)
Q Consensus 877 --~l~~-----h~~~V~~l~~s~-dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~fs~dg 944 (1088)
.+.+ ...+ .|++ ||+++..... |+|.+-|+...+......+....... -..+.+.-+++++|+
T Consensus 185 ~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg 259 (352)
T TIGR02658 185 TEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRAR 259 (352)
T ss_pred eeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCC
Confidence 1111 0112 4455 8888776666 99999998765544433333322110 011345569999999
Q ss_pred CEEEEEe---C--------CeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCC-EEEEEe-CCCcEEEEEcCCCceEEE
Q 001386 945 TRFLLVH---E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCR 1011 (1088)
Q Consensus 945 ~~l~~~~---d--------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~s~s-~dg~v~vwd~~~~~~~~~ 1011 (1088)
+.+.+.. . +.|.++|..+++.+..+..+ ..+..++|||||+ +|++.. .++.|.|.|+.+++.+.+
T Consensus 260 ~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 260 DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred CEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence 9988732 1 57999999999999987764 5889999999999 777666 578899999999999988
Q ss_pred ec
Q 001386 1012 IL 1013 (1088)
Q Consensus 1012 ~~ 1013 (1088)
+.
T Consensus 338 i~ 339 (352)
T TIGR02658 338 VN 339 (352)
T ss_pred ec
Confidence 73
No 253
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.41 E-value=2.6e-09 Score=117.27 Aligned_cols=297 Identities=13% Similarity=0.227 Sum_probs=178.2
Q ss_pred eeEEEEeC--CCCceeEEEeccccccccEEEEEEeCCCCEEEEEeC----CCcEEEEEcCCC--ee--eEEEeCCCCCCC
Q 001386 555 SFLVEWNE--SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD----DHVIKIWDMNKV--QL--LTTIDAGGGLPE 624 (1088)
Q Consensus 555 ~~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~----dg~i~iwd~~~~--~~--~~~~~~~~~~~~ 624 (1088)
+.|++|++ .++++...-.... ......++++|++++|++..+ ++.|..|++... ++ +......+. .
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~--~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~--~ 88 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAE--GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS--S 88 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEE--SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS--C
T ss_pred CcEEEEEEcCCCCCceEeeeecC--CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC--C
Confidence 34666555 5665533322111 245677889999999999876 578999888764 33 333332222 3
Q ss_pred CceEEEecCCCEEEEEeC-CCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccc
Q 001386 625 NPRICFNKNGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1088)
Q Consensus 625 v~~v~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 703 (1088)
...++++|++++|+++.. +|.+.++++.....+....
T Consensus 89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~------------------------------------------ 126 (345)
T PF10282_consen 89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVV------------------------------------------ 126 (345)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEE------------------------------------------
T ss_pred cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceee------------------------------------------
Confidence 467999999999988874 7889888877431111000
Q ss_pred cccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCC
Q 001386 704 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRH 783 (1088)
Q Consensus 704 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~ 783 (1088)
..+.+. |. +.+
T Consensus 127 ----------------------------------~~~~~~--g~-----g~~---------------------------- 137 (345)
T PF10282_consen 127 ----------------------------------QTVRHE--GS-----GPN---------------------------- 137 (345)
T ss_dssp ----------------------------------EEEESE--EE-----ESS----------------------------
T ss_pred ----------------------------------eecccC--CC-----CCc----------------------------
Confidence 000000 00 000
Q ss_pred CCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe--CCcEEEEEcCCce--e--EEEec-CCCCCeEEEEEcCCCCcEEE
Q 001386 784 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFK--T--ILTIM-PPSPTATSLAFNPHDNNVIA 856 (1088)
Q Consensus 784 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--dg~i~iwd~~~~~--~--~~~~~-~~~~~i~~l~~sp~d~~~la 856 (1088)
+.........++.++|||+++++.. .+.|.+|++.... . ...+. ......+.++|+| +++++.
T Consensus 138 ---------~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Y 207 (345)
T PF10282_consen 138 ---------PDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAY 207 (345)
T ss_dssp ---------TTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEE
T ss_pred ---------ccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEE
Confidence 0001334566788999999888886 4679999987654 2 22232 3446789999999 677665
Q ss_pred E-EeCCCeEEEEEcC--Ccee--eeeecc----c--cCCeeEEEECCCCCEEEEEe-CCCcEEEEEcC--CCceeeeeee
Q 001386 857 I-GMDDSTILIYNAR--SSEV--ISKLEG----H--SKRVTGLVFSDALNILVSSG-GDAQIFVWDVD--GWGIQTCRSL 922 (1088)
Q Consensus 857 s-g~~dg~i~lwd~~--~~~~--~~~l~~----h--~~~V~~l~~s~dg~~las~s-~Dg~i~iwd~~--~~~~~~~~~~ 922 (1088)
+ .-.+++|.++++. +++. +..+.. . ......|+++|||++|.++. .+.+|.+|+++ ++.......+
T Consensus 208 v~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~ 287 (345)
T PF10282_consen 208 VVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTV 287 (345)
T ss_dssp EEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEE
T ss_pred EecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEE
Confidence 4 4567789999988 4432 222221 1 12578899999999987665 56789999994 3444333333
Q ss_pred ecCCCCccCCCCeEEEEEcCCCCEEEEE--eCCeEEEEEc--CcceeeeeeecCCCcCEEEEEE
Q 001386 923 QTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEA--EELTCLKQWFPISSVPISQATF 982 (1088)
Q Consensus 923 ~~~~~~~~~~~~v~~~~fs~dg~~l~~~--~d~~i~vwd~--~~~~~~~~~~~~h~~~v~~l~f 982 (1088)
... +. ....++|+|||++|+++ .++.|.+|++ ++|.....-.........||.|
T Consensus 288 ~~~-G~-----~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 288 PTG-GK-----FPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EES-SS-----SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred eCC-CC-----CccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 321 22 36899999999999996 4568988866 5666544322122455666665
No 254
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.40 E-value=3.1e-11 Score=119.06 Aligned_cols=155 Identities=12% Similarity=0.185 Sum_probs=108.2
Q ss_pred EEEEEcCCCCcEEEEEeC----------CCeEEEEEcCC-ceeeeeecc-ccCCeeEEEECCCCCEEEEE--eCCCcEEE
Q 001386 843 TSLAFNPHDNNVIAIGMD----------DSTILIYNARS-SEVISKLEG-HSKRVTGLVFSDALNILVSS--GGDAQIFV 908 (1088)
Q Consensus 843 ~~l~~sp~d~~~lasg~~----------dg~i~lwd~~~-~~~~~~l~~-h~~~V~~l~~s~dg~~las~--s~Dg~i~i 908 (1088)
..+.|+| .|.+|++-.. -|...||-++. +..+..+.- ..++|.+++|+|+|+.+|++ ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4577888 5665554332 13445555522 223344432 45679999999999987655 35679999
Q ss_pred EEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEe----CCeEEEEEcCcceeeeeeecCCCcCEEEEEEee
Q 001386 909 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAEELTCLKQWFPISSVPISQATFSC 984 (1088)
Q Consensus 909 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~----d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~ 984 (1088)
||++.. .+..... ..+..+.|||+|++|+++. .|.|.+||+.+.+.+.... ...++.++|||
T Consensus 88 yd~~~~------~i~~~~~-----~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~---~~~~t~~~WsP 153 (194)
T PF08662_consen 88 YDVKGK------KIFSFGT-----QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE---HSDATDVEWSP 153 (194)
T ss_pred EcCccc------EeEeecC-----CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc---cCcEEEEEEcC
Confidence 999731 2222221 1467899999999999953 3679999999888887633 34578999999
Q ss_pred CCCEEEEEeC------CCcEEEEEcCCCceEEEec
Q 001386 985 DCRMVFTSFV------DGTLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 985 dg~~l~s~s~------dg~v~vwd~~~~~~~~~~~ 1013 (1088)
||+++++++. |+.++||+.. |+++.+..
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 9999998875 7889999985 77766544
No 255
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.38 E-value=2.3e-12 Score=122.53 Aligned_cols=170 Identities=21% Similarity=0.262 Sum_probs=129.5
Q ss_pred chhHHHHHHHHHhhhhcCcHHHHHHHHHhcCCChh---------HHHHHHHhcCccHHHHHHhhccCcc--ccCccccch
Q 001386 3 KLNKDLVFLILQFLNEEGFTESAHMLERESRFYFD---------MKFFEDMILDGKWEDVEQYLSSFTK--VDDNRYSTK 71 (1088)
Q Consensus 3 ~~~~~~~~li~q~L~~~g~~~s~~~L~~Es~~~~~---------~~~~~~~i~~g~w~~~~~~l~~~~~--~~~~~~~~~ 71 (1088)
...+|+.|||+.||-..||.++|..+.+|+|+..+ -..+|.+|..|+-++|+..+..+-+ ++.+. .
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~---~ 100 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR---E 100 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch---h
Confidence 45789999999999999999999999999999661 4778999999999999999998832 34332 3
Q ss_pred hhhHHHHhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccccccccccc-cccCCChHHHHHHHHHHHh
Q 001386 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLS-KYYGDALSARKNMMLELKQ 150 (1088)
Q Consensus 72 ~~~~l~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~~~~~~~R~~l~~~l~~ 150 (1088)
+.|.|.+|+++||+..+..++|+.|+|++|.|...-+++.++.|+..|..--++....-. .| --....|.++...+..
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~-l~~~s~R~kvA~~vN~ 179 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAE-LLSQSLRQKVASEVNS 179 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHH-HHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999887888888888888765443222100 00 0013356667777776
Q ss_pred hcccCccccccccCCCcchHHHHHHHHHHHHHHH
Q 001386 151 IIEANPILQGKLKFPSIKRQRLRRLINQSLNWQH 184 (1088)
Q Consensus 151 ~~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~ 184 (1088)
.|-...-. -...+|..||+.-+..|.
T Consensus 180 aiL~~~~~--------~~~~~l~~llk~~~~~~~ 205 (228)
T KOG2659|consen 180 AILASQEH--------ESEPKLPFLLKLISWAQE 205 (228)
T ss_pred HHHHHhcc--------cccchHHHHHHHHHHHHH
Confidence 66543220 125678888866666664
No 256
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.38 E-value=7.6e-11 Score=116.51 Aligned_cols=339 Identities=14% Similarity=0.176 Sum_probs=202.7
Q ss_pred ceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcC-CCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCC
Q 001386 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1088)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1088)
..++.++|+. +.++....-|..+-+++.+.|.+++||--. .++.-..+... ....+.++.+.++.+.|++|-..|
T Consensus 15 ~ll~~~eG~~---d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~-mP~~~~~~~y~~e~~~L~vg~~ng 90 (404)
T KOG1409|consen 15 ELLSKIEGSQ---DDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY-MPSPCSAMEYVSESRRLYVGQDNG 90 (404)
T ss_pred hhhhhhcCch---hhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhh-CCCCceEeeeeccceEEEEEEecc
Confidence 3456677777 788888888888999999999999999543 45544444332 234578999999999999999999
Q ss_pred cEEEEeCCCC----CcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCC
Q 001386 645 RIKILETPES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP 720 (1088)
Q Consensus 645 ~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~ 720 (1088)
++.-+.+... ...+....|...+..+-++.. ...+++.+.|..+ .|.
T Consensus 91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~----------------------~e~V~s~~~dk~~-~~h------ 141 (404)
T KOG1409|consen 91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLT----------------------HEWVLSTGKDKQF-AWH------ 141 (404)
T ss_pred eEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCC----------------------ceeEEEeccccce-EEE------
Confidence 9988876533 223333445555555444421 2222333222211 010
Q ss_pred CcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCC
Q 001386 721 SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEA 800 (1088)
Q Consensus 721 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1088)
++ ..|. .+--|.+ . ..
T Consensus 142 --------------------c~-e~~~---------~lg~Y~~-------------------------~---------~~ 157 (404)
T KOG1409|consen 142 --------------------CT-ESGN---------RLGGYNF-------------------------E---------TP 157 (404)
T ss_pred --------------------ee-ccCC---------cccceEe-------------------------e---------cc
Confidence 00 0000 0000000 0 00
Q ss_pred eeEEEEecCCCEEEEEe-CCcEEEE--EcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce-eee
Q 001386 801 VPCFALSKNDAYLFSAS-GGVISLY--IVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VIS 876 (1088)
Q Consensus 801 v~~~~~s~dg~~l~~~~-dg~i~iw--d~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~-~~~ 876 (1088)
.+++.+.-. +...|. .|.|..- ..+....+.++.+|.+.+++++|.| ...+|.+|..|..|.+||+.-.+ ...
T Consensus 158 ~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~ 234 (404)
T KOG1409|consen 158 ASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAY 234 (404)
T ss_pred CCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceee
Confidence 000000000 222332 3333332 2344667888999999999999999 88999999999999999997654 346
Q ss_pred eeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeee-----cCCC--------------------CccC
Q 001386 877 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQ-----TPDG--------------------VMTL 931 (1088)
Q Consensus 877 ~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~-----~~~~--------------------~~~~ 931 (1088)
.+.+|.+.|..+...+--+.|.+++.||.|.+|+++........-+. .... |...
T Consensus 235 el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crk 314 (404)
T KOG1409|consen 235 ELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRK 314 (404)
T ss_pred eeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhh
Confidence 78899999999999888899999999999999999864322211000 0000 0000
Q ss_pred CC-CeEEEEEcCCCCEEEEEeCCeEEEEEcCcc-------eeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 001386 932 AP-SETHIQFHKDQTRFLLVHETHLAIYEAEEL-------TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1003 (1088)
Q Consensus 932 ~~-~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~-------~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~ 1003 (1088)
-+ .+-..+-+.-..+-..+.+-.+++.|.-.. ..++.+... ...|+.+.+-.+-..|+|++.|..|.|||+
T Consensus 315 cg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei-~tgItamhlqetlglLvTsG~~Rvi~iwd~ 393 (404)
T KOG1409|consen 315 CGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEI-KTGITAMHLQETLGLLVTSGTDRVIKIWDV 393 (404)
T ss_pred hhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCcccccccc-ccceeEEEhhhhccceeecCCceEEEEEec
Confidence 00 111111122222222344445555553211 112222211 457888999888889999999999999998
Q ss_pred CC
Q 001386 1004 SN 1005 (1088)
Q Consensus 1004 ~~ 1005 (1088)
.+
T Consensus 394 ~~ 395 (404)
T KOG1409|consen 394 RS 395 (404)
T ss_pred hh
Confidence 75
No 257
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.38 E-value=9.5e-10 Score=116.46 Aligned_cols=270 Identities=14% Similarity=0.128 Sum_probs=171.1
Q ss_pred CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeC----------CCEEEEEEcc
Q 001386 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS----------KHIVQLYAYH 426 (1088)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~----------dg~i~vwd~~ 426 (1088)
++|.+.|..+++.+.+... |. .-..+ +||||+.|.++.. +..|.+||+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~------------------G~--~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDG------------------GF--LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred ceEEEEECCCCEEEEEEEc------------------cC--CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 8999999999987765221 11 11224 9999999988755 6789999999
Q ss_pred CCCcccceeEecc-C---CCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEE
Q 001386 427 GGSDARQQLEIDA-H---VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI 502 (1088)
Q Consensus 427 ~~~~~~~~~~~~~-h---~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 502 (1088)
+.+.+..+..-.. + ......++++|||+.+++.--+.+..|-+.|+.+++.+.++....... .+ +..+.. .
T Consensus 86 t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~---vy-~t~e~~-~ 160 (352)
T TIGR02658 86 THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH---IF-PTANDT-F 160 (352)
T ss_pred cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE---EE-EecCCc-c
Confidence 9987664321000 1 223447899999995333333458899999999999998887532111 11 111211 2
Q ss_pred EEEecCCeEEEEECCCCCceE-----EecCCCCce-EEEEEcc-CCCEEEEEeeCCCCceeEEEEeCCCC-----ceeEE
Q 001386 503 FSISVDGKIKAWLYDSLGARV-----DYDAPGLGC-TRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEG-----AIKRT 570 (1088)
Q Consensus 503 ~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~v-~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd~~~~-----~~~~~ 570 (1088)
...+.||......++...... .+......+ ..-.|++ +|+++.+.. ++.|++.|+... .....
T Consensus 161 ~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-----eG~V~~id~~~~~~~~~~~~~~ 235 (352)
T TIGR02658 161 FMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY-----TGKIFQIDLSSGDAKFLPAIEA 235 (352)
T ss_pred EEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEec-----CCeEEEEecCCCcceecceeee
Confidence 234456655554443322211 111100000 0113456 888887765 366999995432 32332
Q ss_pred Eeccc----cccccEEEEEEeCCCCEEEEEe----------CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCC-
Q 001386 571 YQGLQ----LQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT- 635 (1088)
Q Consensus 571 ~~~~~----~~~~~v~~~~~~~~~~~l~~~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~- 635 (1088)
+.... -..+.+.-+++++++++++... ..+.|.++|..+++.+..+.... .+..++++||++
T Consensus 236 ~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~Dgkp 312 (352)
T TIGR02658 236 FTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVSQDAKP 312 (352)
T ss_pred ccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEECCCCCe
Confidence 22111 0112334499999999988843 22579999999999999988643 468999999999
Q ss_pred EEEEEe-CCCcEEEEeCCCCCccccc
Q 001386 636 LLAVIA-NENRIKILETPESNSVDAA 660 (1088)
Q Consensus 636 ~l~~~~-~dg~i~iwd~~~~~~~~~~ 660 (1088)
+|++.. .++.|.++|..+++.+..+
T Consensus 313 ~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 313 LLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEEeCCCCCcEEEEECcCCeEEeee
Confidence 777666 5788999999999887765
No 258
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=1.1e-10 Score=131.00 Aligned_cols=238 Identities=11% Similarity=0.037 Sum_probs=147.6
Q ss_pred hhheeecccCCCCceeeeecCCCCe--EEEEEccc--CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCe
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQHT--LLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~--lla~g~~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V 399 (1088)
+...+.|..+...+..-+|||||+. ++.+...+ ..|.+.++.+|+... +....+..
T Consensus 174 G~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~ 233 (428)
T PRK01029 174 GQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQ 233 (428)
T ss_pred CCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCc
Confidence 3444556656667788899999975 33344444 358888888886543 22234455
Q ss_pred EEEEECCCCCEEEEEeC-----CCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEE--eC
Q 001386 400 NRVVWSPDGSLLGVAYS-----KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW--DA 472 (1088)
Q Consensus 400 ~~l~~s~dg~~las~~~-----dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vw--d~ 472 (1088)
...+|||||+.||..+. +..+.+|++.++..-.......++.......+|+|||+. ++++...+|...+| ++
T Consensus 234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~-Laf~s~~~g~~~ly~~~~ 312 (428)
T PRK01029 234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTR-LVFVSNKDGRPRIYIMQI 312 (428)
T ss_pred cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEEC
Confidence 67899999999998653 223455777754211111112223334567899999995 23333456655555 44
Q ss_pred CC-CceeEEeccCCccEEEEeeeeeCCceEEEEEecC---CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001386 473 VT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1088)
Q Consensus 473 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 548 (1088)
.. +.....+..+...+....| ++||+.|+..+.+ ..|.+||+.+++...... ....+....|+|||+.|+...
T Consensus 313 ~~~g~~~~~lt~~~~~~~~p~w--SPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~ 389 (428)
T PRK01029 313 DPEGQSPRLLTKKYRNSSCPAW--SPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSA 389 (428)
T ss_pred cccccceEEeccCCCCccceeE--CCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEE
Confidence 32 3334455545555666667 5577777766543 368999998876654332 234567789999999998765
Q ss_pred eCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCC
Q 001386 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 590 (1088)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 590 (1088)
.. .+...|+++|+.+++......+ . +.+...+|+|-.
T Consensus 390 ~~-~g~~~L~~vdl~~g~~~~Lt~~-~---g~~~~p~Ws~~~ 426 (428)
T PRK01029 390 GN-SNESELYLISLITKKTRKIVIG-S---GEKRFPSWGAFP 426 (428)
T ss_pred CC-CCCceEEEEECCCCCEEEeecC-C---CcccCceecCCC
Confidence 43 3466799999988876544432 2 345667777643
No 259
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=7.8e-11 Score=118.69 Aligned_cols=117 Identities=13% Similarity=0.173 Sum_probs=103.8
Q ss_pred CCCeeEEEEecC--CCEEEEEe-CCcEEEEEcCCc-eeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce
Q 001386 798 QEAVPCFALSKN--DAYLFSAS-GGVISLYIVMTF-KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 873 (1088)
Q Consensus 798 ~~~v~~~~~s~d--g~~l~~~~-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~ 873 (1088)
.-.++++.|-+. ...+|++. -+.+++||...+ +++..+.-....++++...| +++++++|..-|.+..||+++++
T Consensus 202 PvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~k 280 (412)
T KOG3881|consen 202 PVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGK 280 (412)
T ss_pred eeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCce
Confidence 345677888877 77888887 799999999865 45677777788999999999 89999999999999999999999
Q ss_pred eeee-eccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q 001386 874 VISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 915 (1088)
Q Consensus 874 ~~~~-l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~ 915 (1088)
++.. +.+-.+.|++|..+|.+++||++|-|+.|||+|+++.+
T Consensus 281 l~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 281 LLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred eeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence 8877 89999999999999999999999999999999999854
No 260
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=4.2e-09 Score=106.30 Aligned_cols=255 Identities=14% Similarity=0.190 Sum_probs=175.5
Q ss_pred CCCCeeEEEEecCCCEEEEEe----CCcEEEEEcCC--ceeE--EEecCCCCCeEEEEEcCCCCcEEEEEeCC-CeEEEE
Q 001386 797 SQEAVPCFALSKNDAYLFSAS----GGVISLYIVMT--FKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDD-STILIY 867 (1088)
Q Consensus 797 ~~~~v~~~~~s~dg~~l~~~~----dg~i~iwd~~~--~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~d-g~i~lw 867 (1088)
....++-++++|+++.|.++. .|.|..|.+.. |+.. ..........+.+++++ ++++|+++... |.|.++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY 116 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence 566788899999999888875 46788887764 4432 22222334448899999 88888887754 799999
Q ss_pred EcCC-ceeee--eeccccCC----------eeEEEECCCCCEEEEEe--CCCcEEEEEcCCCceeeeeeeecCCCCccCC
Q 001386 868 NARS-SEVIS--KLEGHSKR----------VTGLVFSDALNILVSSG--GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 932 (1088)
Q Consensus 868 d~~~-~~~~~--~l~~h~~~----------V~~l~~s~dg~~las~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 932 (1088)
-++. |.+.. .+..|.+. +-...|.|++++|++.+ .|+ |.+|+++.+............|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~~~dg~L~~~~~~~v~~G----- 190 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYDLDDGKLTPADPAEVKPG----- 190 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEEcccCccccccccccCCC-----
Confidence 9865 44321 22336555 88899999999999885 455 9999999877555444444333
Q ss_pred CCeEEEEEcCCCCEEEEE--eCCeEEEEEcCcc--ee--eeeeec--C---CCcCEEEEEEeeCCCEEEEEe-CCCcEEE
Q 001386 933 PSETHIQFHKDQTRFLLV--HETHLAIYEAEEL--TC--LKQWFP--I---SSVPISQATFSCDCRMVFTSF-VDGTLSI 1000 (1088)
Q Consensus 933 ~~v~~~~fs~dg~~l~~~--~d~~i~vwd~~~~--~~--~~~~~~--~---h~~~v~~l~fs~dg~~l~s~s-~dg~v~v 1000 (1088)
....+++|+|++++.-+. -+++|-+|..... +. ++.+.. . -.....++..++||++|.++- ....|.+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 357899999999988774 5689999998863 22 222110 0 156678899999999998764 2347888
Q ss_pred EEcCCCce-EEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCC-cEEEEeCCCCCCCcccc
Q 001386 1001 HEASNLEV-QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-EVYVIEPNEPGDTWAVL 1066 (1088)
Q Consensus 1001 wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg-~v~~w~l~~~~~~~~~~ 1066 (1088)
+.+....- +.... +.+. ....|..+.|+| +|++|+++..++ .|.+|.+....++....
T Consensus 271 f~V~~~~g~L~~~~---~~~t----eg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~ 330 (346)
T COG2706 271 FSVDPDGGKLELVG---ITPT----EGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTLL 330 (346)
T ss_pred EEEcCCCCEEEEEE---Eecc----CCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEec
Confidence 87665422 22221 1111 124577788999 788888888776 89999998877665543
No 261
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=1.3e-10 Score=132.77 Aligned_cols=230 Identities=13% Similarity=0.092 Sum_probs=145.8
Q ss_pred hhheeecccCCCCceeeeecCCCCeEEEEEccc--CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 401 (1088)
....+.+..+...+...+|||||++++.+...+ ..|.+||+.+|+... +....+.+..
T Consensus 188 g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~ 247 (430)
T PRK00178 188 GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGA 247 (430)
T ss_pred CCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCC
Confidence 344466667777899999999999655554433 368999999886543 2223344557
Q ss_pred EEECCCCCEEEEE-eCCC--EEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCC--cEEEEeCCCCc
Q 001386 402 VVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGS 476 (1088)
Q Consensus 402 l~~s~dg~~las~-~~dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~--~i~vwd~~~~~ 476 (1088)
.+|||||++|+.. +.+| .|.+||+.+++.. .+..+........|+|||+. ++++...++ .|.++|+.+++
T Consensus 248 ~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~~d~~~g~ 322 (430)
T PRK00178 248 PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYKVNVNGGR 322 (430)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECCCCC
Confidence 8999999998854 3444 6888899987532 34456666777899999995 233333333 57778888877
Q ss_pred eeEEeccCCccEEEEeeeeeCCceEEEEEecC-C--eEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCC
Q 001386 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-G--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1088)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 553 (1088)
... +...........| +++|+.++..+.+ + .|.+||+.++........ .......|+|||+.++..... .+
T Consensus 323 ~~~-lt~~~~~~~~~~~--Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~-~g 396 (430)
T PRK00178 323 AER-VTFVGNYNARPRL--SADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQ-QG 396 (430)
T ss_pred EEE-eecCCCCccceEE--CCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEec-CC
Confidence 543 2211122223445 4566777766543 3 478889887665432222 222356899999999887653 34
Q ss_pred ceeEEEEeCCCCceeEEEeccccccccEEEEEEeC
Q 001386 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1088)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1088)
...+++++... ...+.+.... +.+...+|+|
T Consensus 397 ~~~l~~~~~~g-~~~~~l~~~~---g~~~~p~ws~ 427 (430)
T PRK00178 397 RGVLMLVSING-RVRLPLPTAQ---GEVREPSWSP 427 (430)
T ss_pred ceEEEEEECCC-CceEECcCCC---CCcCCCccCC
Confidence 56688888754 3334444333 4455566665
No 262
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.7e-10 Score=121.08 Aligned_cols=318 Identities=10% Similarity=0.109 Sum_probs=201.7
Q ss_pred CCCCCCCchhhhcccccCCcccCCCch-hheeecccCCCCceeeeecCCCCeEEEEEcc-----------cCcEEEEecC
Q 001386 298 PDYSPKSSLKKEMFQSFGETSFSDFPK-TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN-----------VGDTGLWDVN 365 (1088)
Q Consensus 298 ~~fsP~~s~~~~~~~~~~~~~~~~~p~-~~~~~l~~h~~~V~~v~~spdg~~lla~g~~-----------dg~i~iwd~~ 365 (1088)
..|||.++++.........- +.=+. ..++.+ .|. .|..+.|||+.++ |+|=+. ...++|||+.
T Consensus 216 v~wSP~GTYL~t~Hk~GI~l--WGG~~f~r~~RF-~Hp-~Vq~idfSP~EkY-LVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQGIAL--WGGESFDRIQRF-YHP-GVQFIDFSPNEKY-LVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred EEecCCceEEEEEeccceee--ecCccHHHHHhc-cCC-CceeeecCCccce-EEEecCCccccCcccCCCceEEEEEcc
Confidence 35888888886654422111 11110 111221 465 8999999999995 665443 1579999999
Q ss_pred CCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEE
Q 001386 366 SGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVN 445 (1088)
Q Consensus 366 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~ 445 (1088)
+|...+.++. +.+....-.-+.||.|++|+|--..++ |.||+..+-..+.. ..+ .-..|.
T Consensus 291 tG~lkrsF~~----------------~~~~~~~WP~frWS~DdKy~Arm~~~s-isIyEtpsf~lld~-Ksl--ki~gIr 350 (698)
T KOG2314|consen 291 TGLLKRSFPV----------------IKSPYLKWPIFRWSHDDKYFARMTGNS-ISIYETPSFMLLDK-KSL--KISGIR 350 (698)
T ss_pred ccchhcceec----------------cCCCccccceEEeccCCceeEEeccce-EEEEecCceeeecc-ccc--CCcccc
Confidence 9998876442 112222223478999999999887755 99999876332211 011 224688
Q ss_pred EEEecCCCCcEEEEEEeC-----CCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEE----------ecCCe
Q 001386 446 DLAFSAPCKQISVITCGD-----DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI----------SVDGK 510 (1088)
Q Consensus 446 ~~~~s~d~~~l~l~s~s~-----d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~----------~~dg~ 510 (1088)
...|+|.+. +|+--.. -..+-+-.+.+++.+++-.-|. |..+.++...+|.+|..- +.-..
T Consensus 351 ~FswsP~~~--llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n 426 (698)
T KOG2314|consen 351 DFSWSPTSN--LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSN 426 (698)
T ss_pred CcccCCCcc--eEEEEcccccCCcceEEEEecCccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccceEee
Confidence 899999988 4543221 1346677777777776655443 555566667777777653 11223
Q ss_pred EEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC-C---ceeEEEeccccccccEEEEEE
Q 001386 511 IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-G---AIKRTYQGLQLQHNSVSVVHF 586 (1088)
Q Consensus 511 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~-~---~~~~~~~~~~~~~~~v~~~~~ 586 (1088)
+.|+.++..........-...|...+|-|.|..+++.+.. +...++..|.+.+ . .++..+.. ...+.+.|
T Consensus 427 ~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~-~~k~tvsfY~~e~~~~~~~lVk~~dk-----~~~N~vfw 500 (698)
T KOG2314|consen 427 LEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGN-TVKNTVSFYAVETNIKKPSLVKELDK-----KFANTVFW 500 (698)
T ss_pred EEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcc-ccccceeEEEeecCCCchhhhhhhcc-----cccceEEE
Confidence 5667666665555444455678899999999998877653 3366788887763 2 23333332 45788999
Q ss_pred eCCCCEEEEE---eCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCC------CcEEEEeCC
Q 001386 587 DTAKDQILAA---GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE------NRIKILETP 652 (1088)
Q Consensus 587 ~~~~~~l~~~---s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d------g~i~iwd~~ 652 (1088)
+|.|++++.+ |..|.+.++|+.-.....+-. ..+ ...+.+.|.|.|+++++++.. .-.++|+..
T Consensus 501 sPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~-~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 501 SPKGRFVVVAALVSRRGDLEFYDTDYADLKDTAS-PEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred cCCCcEEEEEEecccccceEEEecchhhhhhccC-ccc-cccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 9999999885 467899999987422222211 111 235779999999999998863 445666655
No 263
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=9.6e-11 Score=132.85 Aligned_cols=230 Identities=14% Similarity=0.096 Sum_probs=143.6
Q ss_pred hhheeecccCCCCceeeeecCCCCeEEEEEcccC--cEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 401 (1088)
+...+.+..+...+.+.+|||||++++.+...++ .|.+||+.+++.... ....+....
T Consensus 207 G~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l--------------------t~~~g~~~~ 266 (448)
T PRK04792 207 GYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV--------------------TSFPGINGA 266 (448)
T ss_pred CCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe--------------------cCCCCCcCC
Confidence 3334566667778999999999996555544333 588999988864321 112233446
Q ss_pred EEECCCCCEEEEE-eCCCE--EEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCC--cEEEEeCCCCc
Q 001386 402 VVWSPDGSLLGVA-YSKHI--VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGS 476 (1088)
Q Consensus 402 l~~s~dg~~las~-~~dg~--i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~--~i~vwd~~~~~ 476 (1088)
.+|||||+.|+.. +.++. |.+||+.+++.. .+..+.......+|+|||+. ++++...++ .|.++|+.+++
T Consensus 267 ~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~ 341 (448)
T PRK04792 267 PRFSPDGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGK 341 (448)
T ss_pred eeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCC
Confidence 8999999988764 45554 888888877532 34455566778899999995 233343344 46677887776
Q ss_pred eeEEeccCCccEEEEeeeeeCCceEEEEEec-CCe--EEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCC
Q 001386 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1088)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 553 (1088)
... +..........+| ++||++++..+. ++. |.++|+.++..... ... .......|+|||+.|+..... .+
T Consensus 342 ~~~-Lt~~g~~~~~~~~--SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~l-t~~-~~d~~ps~spdG~~I~~~~~~-~g 415 (448)
T PRK04792 342 VSR-LTFEGEQNLGGSI--TPDGRSMIMVNRTNGKFNIARQDLETGAMQVL-TST-RLDESPSVAPNGTMVIYSTTY-QG 415 (448)
T ss_pred EEE-EecCCCCCcCeeE--CCCCCEEEEEEecCCceEEEEEECCCCCeEEc-cCC-CCCCCceECCCCCEEEEEEec-CC
Confidence 543 2212222233455 556667766554 343 55567766654332 221 122345899999999887653 34
Q ss_pred ceeEEEEeCCCCceeEEEeccccccccEEEEEEeC
Q 001386 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1088)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1088)
...+++++. +|...+.+.... +.+...+|+|
T Consensus 416 ~~~l~~~~~-~G~~~~~l~~~~---g~~~~p~Wsp 446 (448)
T PRK04792 416 KQVLAAVSI-DGRFKARLPAGQ---GEVKSPAWSP 446 (448)
T ss_pred ceEEEEEEC-CCCceEECcCCC---CCcCCCccCC
Confidence 566888886 565666665544 4566667776
No 264
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=4.7e-10 Score=126.10 Aligned_cols=242 Identities=13% Similarity=0.090 Sum_probs=149.7
Q ss_pred CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEE---EEeCC--CEEEEEEccCCCcc
Q 001386 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG---VAYSK--HIVQLYAYHGGSDA 431 (1088)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~la---s~~~d--g~i~vwd~~~~~~~ 431 (1088)
..|.+.|...+.... +......+..-+|||||+.++ +...+ ..|.+.++.+|+..
T Consensus 165 ~~l~~~d~dG~~~~~--------------------lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~ 224 (428)
T PRK01029 165 GELWSVDYDGQNLRP--------------------LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK 224 (428)
T ss_pred ceEEEEcCCCCCceE--------------------cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce
Confidence 367777776654332 333556677889999998633 33333 35888899887643
Q ss_pred cceeEeccCCCCEEEEEecCCCCcEEEEEEeC----CCcEEEEeCCCC---ceeEEeccCCccEEEEeeeeeCCceEEEE
Q 001386 432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----DKTIKVWDAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFS 504 (1088)
Q Consensus 432 ~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~----d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 504 (1088)
+ +....+.....+|||||+.+ +++... +..+..||+.++ +......++.......+| ++||+.|+.
T Consensus 225 ~----lt~~~g~~~~p~wSPDG~~L-af~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~w--SPDG~~Laf 297 (428)
T PRK01029 225 K----ILALQGNQLMPTFSPRKKLL-AFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSF--SPDGTRLVF 297 (428)
T ss_pred E----eecCCCCccceEECCCCCEE-EEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEE--CCCCCEEEE
Confidence 2 33344555678999999953 333322 223445777653 333333322233345566 567777666
Q ss_pred Ee-cCCeEEEEE--CCC-CCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEecccccccc
Q 001386 505 IS-VDGKIKAWL--YDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 580 (1088)
Q Consensus 505 ~~-~dg~i~iwd--~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 580 (1088)
.+ .+|...+|. +.. ......+......+....|||||+.|+..... .+...|++||+.+++......+ . ..
T Consensus 298 ~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~---~~ 372 (428)
T PRK01029 298 VSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-P---EN 372 (428)
T ss_pred EECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-C---CC
Confidence 55 467655654 432 22233344444566788999999999987653 3456799999998876544332 2 34
Q ss_pred EEEEEEeCCCCEEEEEeC---CCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecC
Q 001386 581 VSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1088)
Q Consensus 581 v~~~~~~~~~~~l~~~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1088)
+....|+|||+.|+..+. ...|+++|+.+++........+ .+...+|+|-
T Consensus 373 ~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g---~~~~p~Ws~~ 425 (428)
T PRK01029 373 KESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSG---EKRFPSWGAF 425 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC---cccCceecCC
Confidence 667899999998876443 3568889998877655443222 3566788774
No 265
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=5.2e-10 Score=126.89 Aligned_cols=223 Identities=15% Similarity=0.109 Sum_probs=141.5
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCC---CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCc--
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-- 466 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~d---g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~-- 466 (1088)
+..+...+.+.+|||||++|+..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 34467789999999999999987543 258999998876422 2222333457899999995 3344566664
Q ss_pred EEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEec-CCe--EEEEECCCCCceEEecCCCCceEEEEEccCCCE
Q 001386 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543 (1088)
Q Consensus 467 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 543 (1088)
|.+||+.+++. ..+..+.......+|+ +||+.++..+. ++. |.++|+.+++.... ..........+|+|||++
T Consensus 288 Iy~~dl~tg~~-~~lt~~~~~~~~p~wS--pDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~~~~SpDG~~ 363 (448)
T PRK04792 288 IYVVDIATKAL-TRITRHRAIDTEPSWH--PDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLGGSITPDGRS 363 (448)
T ss_pred EEEEECCCCCe-EECccCCCCccceEEC--CCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcCeeECCCCCE
Confidence 77789887764 3444455555666774 46666665543 444 66667766554332 222223345789999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC-C--cEEEEEcCCCeeeEEEeCCC
Q 001386 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-H--VIKIWDMNKVQLLTTIDAGG 620 (1088)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-g--~i~iwd~~~~~~~~~~~~~~ 620 (1088)
++..+.. .+...|.++|+.+++... +.... ......|+|+|+.++..+.+ + .+++++. +|.....+....
T Consensus 364 l~~~~~~-~g~~~I~~~dl~~g~~~~-lt~~~----~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~ 436 (448)
T PRK04792 364 MIMVNRT-NGKFNIARQDLETGAMQV-LTSTR----LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ 436 (448)
T ss_pred EEEEEec-CCceEEEEEECCCCCeEE-ccCCC----CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCC
Confidence 9887653 334568889988886533 32211 11234799999998876543 3 3677776 555566665432
Q ss_pred CCCCCceEEEec
Q 001386 621 GLPENPRICFNK 632 (1088)
Q Consensus 621 ~~~~v~~v~~s~ 632 (1088)
+ .+...+|+|
T Consensus 437 g--~~~~p~Wsp 446 (448)
T PRK04792 437 G--EVKSPAWSP 446 (448)
T ss_pred C--CcCCCccCC
Confidence 2 356677776
No 266
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=7.8e-10 Score=126.48 Aligned_cols=223 Identities=15% Similarity=0.126 Sum_probs=142.0
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCC---CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCC--c
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--T 466 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~d---g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~--~ 466 (1088)
+..+...+...+|||||++||..+.+ ..|.+||+.+++... +....+.+...+|+|||+. ++++.+.++ .
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~ 268 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE 268 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence 34467789999999999999887644 369999999886432 3333345567899999995 333455555 5
Q ss_pred EEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEec-CC--eEEEEECCCCCceEEecCCCCceEEEEEccCCCE
Q 001386 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543 (1088)
Q Consensus 467 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 543 (1088)
|.+||+.+++.. .+..+........| ++||+.++..+. +| .|.++|+.+++.... ...........|+|||+.
T Consensus 269 Iy~~d~~~~~~~-~lt~~~~~~~~~~~--spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~~~~~~~~~~Spdg~~ 344 (430)
T PRK00178 269 IYVMDLASRQLS-RVTNHPAIDTEPFW--GKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFVGNYNARPRLSADGKT 344 (430)
T ss_pred EEEEECCCCCeE-EcccCCCCcCCeEE--CCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 888899887654 45445544555566 456666655543 33 477777766654332 222233345789999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC---CcEEEEEcCCCeeeEEEeCCC
Q 001386 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGG 620 (1088)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~ 620 (1088)
++..... ++...|.++|+.+++... +.... ......|+|+|+.++..+.+ ..+.++++.. .....+....
T Consensus 345 i~~~~~~-~~~~~l~~~dl~tg~~~~-lt~~~----~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~ 417 (430)
T PRK00178 345 LVMVHRQ-DGNFHVAAQDLQRGSVRI-LTDTS----LDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQ 417 (430)
T ss_pred EEEEEcc-CCceEEEEEECCCCCEEE-ccCCC----CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCC
Confidence 9987643 234569999999886533 32211 12245899999999886643 3466777743 3334444322
Q ss_pred CCCCCceEEEec
Q 001386 621 GLPENPRICFNK 632 (1088)
Q Consensus 621 ~~~~v~~v~~s~ 632 (1088)
+ .+...+|+|
T Consensus 418 g--~~~~p~ws~ 427 (430)
T PRK00178 418 G--EVREPSWSP 427 (430)
T ss_pred C--CcCCCccCC
Confidence 2 355666765
No 267
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.31 E-value=5.6e-10 Score=127.78 Aligned_cols=210 Identities=15% Similarity=0.087 Sum_probs=138.7
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCC---CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCC--c
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--T 466 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~d---g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~--~ 466 (1088)
+..+...+...+|||||++||.++.+ ..|++||+.+++.. .+..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----KVASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 44566789999999999999988644 47999999987532 23345566778999999985 334444444 5
Q ss_pred EEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEec-CC--eEEEEECCCCCceEEecCCCCceEEEEEccCCCE
Q 001386 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543 (1088)
Q Consensus 467 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 543 (1088)
|.+||+.++... .+..+........| +++|+.|+..+. ++ .|.++|+.+.+.. .+.........+.|+|+|++
T Consensus 260 i~~~d~~~~~~~-~l~~~~~~~~~~~~--s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 260 IYVMDLDGKQLT-RLTNGPGIDTEPSW--SPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred EEEEECCCCCEE-ECCCCCCCCCCEEE--CCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCE
Confidence 888998877643 44444444445566 457777766554 33 5777787765533 33334456677899999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCC---cEEEEEcCCCeeeEEEe
Q 001386 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTID 617 (1088)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~ 617 (1088)
++.+..+. +...|.+||+.++... .+.... ......|+|++++|+..+.++ .+++.+. +++....+.
T Consensus 336 i~~~~~~~-~~~~i~~~d~~~~~~~-~l~~~~----~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~ 405 (417)
T TIGR02800 336 IAFVHREG-GGFNIAVMDLDGGGER-VLTDTG----LDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLP 405 (417)
T ss_pred EEEEEccC-CceEEEEEeCCCCCeE-EccCCC----CCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECC
Confidence 99887543 3557999999886543 232211 234457999999998877554 3455554 344444443
No 268
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.31 E-value=2.4e-10 Score=130.86 Aligned_cols=216 Identities=19% Similarity=0.159 Sum_probs=141.4
Q ss_pred hhheeecccCCCCceeeeecCCCCeEEEEEccc--CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 401 (1088)
....+.|..+...+...+|||||++++.+...+ ..|++||+.+++... +..+.+.+.+
T Consensus 179 g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~~~~~~~~ 238 (417)
T TIGR02800 179 GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VASFPGMNGA 238 (417)
T ss_pred CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eecCCCCccc
Confidence 344566667777899999999999644443322 479999999886443 2234556778
Q ss_pred EEECCCCCEEEEE-eCCC--EEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEe-CCC--cEEEEeCCCC
Q 001386 402 VVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDK--TIKVWDAVTG 475 (1088)
Q Consensus 402 l~~s~dg~~las~-~~dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s-~d~--~i~vwd~~~~ 475 (1088)
++|+|||+.|+.. +.++ .|.+||+.++... .+..+........|+|||+. ++..+ .++ .|.++|+.++
T Consensus 239 ~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~iy~~d~~~~ 312 (417)
T TIGR02800 239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQIYMMDADGG 312 (417)
T ss_pred eEECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCCE--EEEEECCCCCceEEEEECCCC
Confidence 9999999988754 3333 5889999887532 34455555667899999994 44433 333 5888888777
Q ss_pred ceeEEeccCCccEEEEeeeeeCCceEEEEEecCC---eEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCC
Q 001386 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1088)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~ 552 (1088)
+.. .+..+...+....| +++|.+++.++.++ .|.+||+.+...... ... .......|+|||+.|+.....+
T Consensus 313 ~~~-~l~~~~~~~~~~~~--spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l-~~~-~~~~~p~~spdg~~l~~~~~~~- 386 (417)
T TIGR02800 313 EVR-RLTFRGGYNASPSW--SPDGDLIAFVHREGGGFNIAVMDLDGGGERVL-TDT-GLDESPSFAPNGRMILYATTRG- 386 (417)
T ss_pred CEE-EeecCCCCccCeEE--CCCCCEEEEEEccCCceEEEEEeCCCCCeEEc-cCC-CCCCCceECCCCCEEEEEEeCC-
Confidence 643 44434455566666 45777888887776 788899887544332 222 2334568999999998887543
Q ss_pred CceeEEEEeCCCCceeEEEe
Q 001386 553 GESFLVEWNESEGAIKRTYQ 572 (1088)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~ 572 (1088)
+...+++.+.. +.....+.
T Consensus 387 ~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 387 GRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred CcEEEEEEECC-CceeeECC
Confidence 34556666643 44444443
No 269
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.31 E-value=8.8e-10 Score=108.99 Aligned_cols=356 Identities=14% Similarity=0.207 Sum_probs=211.3
Q ss_pred CCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc-----eeEEeccCC------------ccEEEEeeeeeCCceEEE
Q 001386 441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-----RTYSFEGHG------------APVYSLCPHAKENIHFIF 503 (1088)
Q Consensus 441 ~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~~~~l~ 503 (1088)
..-|.++.|...|. +|++|..+|.|.++.-.... ....+..|. ..|+.+.|....+...++
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 34688999999999 89999999999999633221 223344443 457778888888888899
Q ss_pred EEecCCeEEEEECCCCCceEE-----ecCCCCceEEEEE---ccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEe-cc
Q 001386 504 SISVDGKIKAWLYDSLGARVD-----YDAPGLGCTRMAY---SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-GL 574 (1088)
Q Consensus 504 s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~v~~~~~---s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-~~ 574 (1088)
..+.|.+|++|.+........ .......+.++.. .+....+.+ .+.+.+. .|
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea-------------------~prRv~aNaH 163 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEA-------------------SPRRVYANAH 163 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeee-------------------eeeeeccccc
Confidence 999999999998876544330 0111112222211 111111111 1122222 33
Q ss_pred ccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC-eeeEEEeCCCC-----CCCCceEEEecC-CCEEEEEeCCCcEE
Q 001386 575 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGG-----LPENPRICFNKN-GTLLAVIANENRIK 647 (1088)
Q Consensus 575 ~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~-----~~~v~~v~~s~~-~~~l~~~~~dg~i~ 647 (1088)
. ..|+++.++.|+..++++ +|=.|.+|+++-- +.......... ..-|++..|+|. .+.++..+..|+|+
T Consensus 164 t---yhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 164 T---YHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred e---eEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 3 789999999999888876 4778999998642 22222222111 124678889994 56788888899999
Q ss_pred EEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeee
Q 001386 648 ILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL 727 (1088)
Q Consensus 648 iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~ 727 (1088)
+.|+.....-... -+++.
T Consensus 240 LcDmR~~aLCd~h-------------------------------------------------sKlfE------------- 257 (433)
T KOG1354|consen 240 LCDMRQSALCDAH-------------------------------------------------SKLFE------------- 257 (433)
T ss_pred Eeechhhhhhcch-------------------------------------------------hhhhc-------------
Confidence 9998843211000 00000
Q ss_pred cCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEe
Q 001386 728 LPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 807 (1088)
Q Consensus 728 ~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 807 (1088)
.|. .|..+- ... +--..|..+.|+
T Consensus 258 epe------------dp~~rs--------------------------------------ffs------eiIsSISDvKFs 281 (433)
T KOG1354|consen 258 EPE------------DPSSRS--------------------------------------FFS------EIISSISDVKFS 281 (433)
T ss_pred ccc------------CCcchh--------------------------------------hHH------HHhhhhhceEEc
Confidence 000 000000 000 123456778888
Q ss_pred cCCCEEEEEeCCcEEEEEcC-CceeEEEecCCC------------CCe---EEEEEcCCCCcEEEEEeCCCeEEEEEcCC
Q 001386 808 KNDAYLFSASGGVISLYIVM-TFKTILTIMPPS------------PTA---TSLAFNPHDNNVIAIGMDDSTILIYNARS 871 (1088)
Q Consensus 808 ~dg~~l~~~~dg~i~iwd~~-~~~~~~~~~~~~------------~~i---~~l~~sp~d~~~lasg~~dg~i~lwd~~~ 871 (1088)
++|+++++-+--+|++||++ ..+++.+..-|. ..| ..++|+. ++.++++|+....+++|++..
T Consensus 282 ~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 282 HSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred cCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecCCC
Confidence 88888888877889999984 455555555443 122 4578988 788999999999999999776
Q ss_pred cee-eeeeccccCC--eeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEE
Q 001386 872 SEV-ISKLEGHSKR--VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 948 (1088)
Q Consensus 872 ~~~-~~~l~~h~~~--V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~ 948 (1088)
|.. -.++.+.... ...+ ..-+.+.+++......+|-- .++.. ..+.+.+|+|..+.+|
T Consensus 361 gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~~~~vd------------~ldf~----kkilh~aWhp~en~ia 421 (433)
T KOG1354|consen 361 GSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRDEISVD------------ALDFR----KKILHTAWHPKENSIA 421 (433)
T ss_pred CcceeecccccccCCccccc---ccceeeecCCCccccccccc------------hhhhh----hHHHhhccCCccceee
Confidence 643 2333332222 1111 11123344443332211110 01111 1477889999999999
Q ss_pred EEeCCeEEEEE
Q 001386 949 LVHETHLAIYE 959 (1088)
Q Consensus 949 ~~~d~~i~vwd 959 (1088)
++.-+.+++|.
T Consensus 422 ~aatnnlyif~ 432 (433)
T KOG1354|consen 422 VAATNNLYIFQ 432 (433)
T ss_pred eeecCceEEec
Confidence 98777777763
No 270
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.28 E-value=2.2e-10 Score=113.17 Aligned_cols=267 Identities=12% Similarity=0.165 Sum_probs=175.4
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccc-cccceeeeecCCCCCeEEEEECCCCC-
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGAC-SMLFKTALVRDPGVSVNRVVWSPDGS- 409 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~h~~~V~~l~~s~dg~- 409 (1088)
...+-|.+|.|..+|. +||+|..+|.|.++.-..... .. ++....... ...|.-..--.-...|..+.|.+++.
T Consensus 23 teadiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~-~e--y~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYK-GE--YNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL 98 (433)
T ss_pred chhcceeeEEeecccc-eEeecCCCCeEEEeecccccc-cc--eeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCc
Confidence 3455899999999999 699999999999987543221 01 110000000 00010000112346889999998654
Q ss_pred -EEEEEeCCCEEEEEEccCCCccc------------------c--------------eeE-eccCCCCEEEEEecCCCCc
Q 001386 410 -LLGVAYSKHIVQLYAYHGGSDAR------------------Q--------------QLE-IDAHVGNVNDLAFSAPCKQ 455 (1088)
Q Consensus 410 -~las~~~dg~i~vwd~~~~~~~~------------------~--------------~~~-~~~h~~~v~~~~~s~d~~~ 455 (1088)
.+...+.|.+|++|.+....... . .+. -.+|+.-|+++.++.|+.
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E- 177 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE- 177 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-
Confidence 56666799999999986432211 0 011 135777899999999998
Q ss_pred EEEEEEeCCCcEEEEeCCCCcee---EEeccC-----CccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc------
Q 001386 456 ISVITCGDDKTIKVWDAVTGSRT---YSFEGH-----GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA------ 521 (1088)
Q Consensus 456 l~l~s~s~d~~i~vwd~~~~~~~---~~~~~~-----~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------ 521 (1088)
.++++. |=.|.+|+++--..- ..++.+ ...|++..|+|... ..++-.+..|+|++.|++....
T Consensus 178 -t~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 178 -TFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred -eEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchhh
Confidence 566654 788999998743222 222222 34577888888754 5777788899999999984321
Q ss_pred eEEec----------CCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeC-CCCceeEEEeccccc---------ccc-
Q 001386 522 RVDYD----------APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE-SEGAIKRTYQGLQLQ---------HNS- 580 (1088)
Q Consensus 522 ~~~~~----------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~-~~~~~~~~~~~~~~~---------~~~- 580 (1088)
..... ..-..|..+.|+.+|+++++-. -.+|.+||+ ...+.+.+++.|..- .+.
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~I 329 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAI 329 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccch
Confidence 11111 1112577899999999999843 467999999 456777777766521 122
Q ss_pred --EEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe
Q 001386 581 --VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1088)
Q Consensus 581 --v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1088)
-..++|+.++.++++|+....+++++...|.
T Consensus 330 fdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 330 FDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred hheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 2457899999999999999999999966543
No 271
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.28 E-value=4.4e-10 Score=110.90 Aligned_cols=163 Identities=15% Similarity=0.141 Sum_probs=112.4
Q ss_pred EEEEecCCCCcEEEEEEe--------CCCcEEEEeCC-CCceeEEecc-CCccEEEEeeeeeCCceEEEEEecCCeEEEE
Q 001386 445 NDLAFSAPCKQISVITCG--------DDKTIKVWDAV-TGSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514 (1088)
Q Consensus 445 ~~~~~s~d~~~l~l~s~s--------~d~~i~vwd~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 514 (1088)
..+.|+++|+.+++.+.. .-+...+|-++ .+.....+.- ..++|.+++|+|+.+.-.++.|..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 467899999975444441 11234555542 2334444432 3457999999765432223445567899999
Q ss_pred ECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEE
Q 001386 515 LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL 594 (1088)
Q Consensus 515 d~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 594 (1088)
|++ ......+ ....+..+.|+|+|+++++++.. ...+.|.+||.++.+.+..... ..+..++|+|+|++++
T Consensus 89 d~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~-n~~G~l~~wd~~~~~~i~~~~~-----~~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 89 DVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFG-NLNGDLEFWDVRKKKKISTFEH-----SDATDVEWSPDGRYLA 159 (194)
T ss_pred cCc-ccEeEee--cCCCceEEEECCCCCEEEEEEcc-CCCcEEEEEECCCCEEeecccc-----CcEEEEEEcCCCCEEE
Confidence 996 3333333 45677889999999999998854 2356799999998888776653 3478999999999999
Q ss_pred EEe------CCCcEEEEEcCCCeeeEEEe
Q 001386 595 AAG------DDHVIKIWDMNKVQLLTTID 617 (1088)
Q Consensus 595 ~~s------~dg~i~iwd~~~~~~~~~~~ 617 (1088)
+++ .|..++||+.. |+.+....
T Consensus 160 ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 160 TATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred EEEeccceeccccEEEEEec-CeEeEecc
Confidence 976 37889999984 66665543
No 272
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.27 E-value=5.1e-11 Score=117.72 Aligned_cols=353 Identities=15% Similarity=0.145 Sum_probs=225.0
Q ss_pred eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceE--EecCCCCceEEEEEccCCCEEEEEeeCCCCc
Q 001386 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1088)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~ 554 (1088)
.++.++||...+++....+..+ -+++.+.|.++++|--+...... .......+++++.+.++.+.|+++-. .
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~----n 89 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQD----N 89 (404)
T ss_pred hhhhhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEe----c
Confidence 4567788998898887766554 59999999999999544333222 22334557899999999999999875 3
Q ss_pred eeEEEEeCC----CCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEE
Q 001386 555 SFLVEWNES----EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1088)
Q Consensus 555 ~~i~iwd~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1088)
+.+.-+.+. .....+.+..|. ..+..+-|+....++++.+.|..+.---.+.+..+........ ..+..+
T Consensus 90 gtvtefs~sedfnkm~~~r~~~~h~---~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~---~t~~~~ 163 (404)
T KOG1409|consen 90 GTVTEFALSEDFNKMTFLKDYLAHQ---ARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP---ASALQF 163 (404)
T ss_pred ceEEEEEhhhhhhhcchhhhhhhhh---cceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc---CCCCce
Confidence 446655443 445566666676 8899999998889999999998876555566655544332211 111222
Q ss_pred ecCCCEEEEEeCCCcEEEEeCC--CCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCc
Q 001386 631 NKNGTLLAVIANENRIKILETP--ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708 (1088)
Q Consensus 631 s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 708 (1088)
.-. +...|...|.|.+..+. .-..+..+.+|.+.+.++++. +....++++..|.
T Consensus 164 d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd----------------------~~~~~LfSg~~d~ 219 (404)
T KOG1409|consen 164 DAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD----------------------PGQRLLFSGASDH 219 (404)
T ss_pred eeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc----------------------CCCcEEEeccccC
Confidence 211 55566667777765554 336677888999999999998 4466788999999
Q ss_pred cceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCC---------CCCCCccc
Q 001386 709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS---------TEVPPRLY 779 (1088)
Q Consensus 709 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~---------~~~~~~~~ 779 (1088)
.+.+||+.......... .+|...|..+...+--+.+++++.||.|.+|+++....... ...++..|
T Consensus 220 ~vi~wdigg~~g~~~el-----~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffw 294 (404)
T KOG1409|consen 220 SVIMWDIGGRKGTAYEL-----QGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFW 294 (404)
T ss_pred ceEEEeccCCcceeeee-----ccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHH
Confidence 99999987554444333 34888888888888889999999999999999876543221 22223333
Q ss_pred CCCCCCcceeeccCCC---CCCCCeeEEEEecCCCEEEEEeCCcEEEEEcC-----C--ceeEEEecCCCCCeEEEEEcC
Q 001386 780 QPRHGPQFMVNDTTDS---NSQEAVPCFALSKNDAYLFSASGGVISLYIVM-----T--FKTILTIMPPSPTATSLAFNP 849 (1088)
Q Consensus 780 ~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~-----~--~~~~~~~~~~~~~i~~l~~sp 849 (1088)
+...--......+... .-...+...+-+....+...+..-.+++-|.- + ...+..+......|+++.+..
T Consensus 295 n~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqe 374 (404)
T KOG1409|consen 295 NFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQE 374 (404)
T ss_pred HHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhh
Confidence 3321100000000000 00112222222222223333333334444421 1 122333333346789999887
Q ss_pred CCCcEEEEEeCCCeEEEEEcCC
Q 001386 850 HDNNVIAIGMDDSTILIYNARS 871 (1088)
Q Consensus 850 ~d~~~lasg~~dg~i~lwd~~~ 871 (1088)
.-.+|++++.|..|+|||+.+
T Consensus 375 -tlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 375 -TLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred -hccceeecCCceEEEEEechh
Confidence 667999999999999999874
No 273
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.25 E-value=1.1e-09 Score=117.04 Aligned_cols=188 Identities=14% Similarity=0.229 Sum_probs=147.2
Q ss_pred cCCCEEEEEe-CCcEEEEEcCCceeEEEecCCC---CCeEEEEE------cC-------------CCCcEEEEEeCCCeE
Q 001386 808 KNDAYLFSAS-GGVISLYIVMTFKTILTIMPPS---PTATSLAF------NP-------------HDNNVIAIGMDDSTI 864 (1088)
Q Consensus 808 ~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~---~~i~~l~~------sp-------------~d~~~lasg~~dg~i 864 (1088)
|...++|... ||.+++|+...++....+.+.. +..++..| +| .|...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4556777776 8999999999998887776321 22223222 22 145688889999999
Q ss_pred EEEEcCCceeeeeec--cccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcC
Q 001386 865 LIYNARSSEVISKLE--GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 942 (1088)
Q Consensus 865 ~lwd~~~~~~~~~l~--~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~ 942 (1088)
.+|++..|+....+. .|.+.|+++.++.+-..|.|++.|+.+..|+..... .+....+... .+.+++.+|
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-----~~~~~~~~~~---~~~sl~is~ 154 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-----IIRIWKEQKP---LVSSLCISP 154 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-----eeeeeccCCC---ccceEEEcC
Confidence 999999999988886 499999999999999999999999999999998844 2222222222 588999999
Q ss_pred CCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeC-----CCEEEEE-eCCCcEEEEEcCC
Q 001386 943 DQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCD-----CRMVFTS-FVDGTLSIHEASN 1005 (1088)
Q Consensus 943 dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~d-----g~~l~s~-s~dg~v~vwd~~~ 1005 (1088)
||..++++ .++|.+||+++++.+.. +.||.++|+++.|..+ |.+++++ ..+..+.+|-+..
T Consensus 155 D~~~l~~a-s~~ik~~~~~~kevv~~-ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTA-SRQIKVLDIETKEVVIT-FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEec-cceEEEEEccCceEEEE-ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99988875 37899999999999988 6699999999999987 7776644 4566788887665
No 274
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.22 E-value=8.5e-10 Score=117.83 Aligned_cols=194 Identities=12% Similarity=0.183 Sum_probs=155.7
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEec------C------------CCCcEEEEEEeCCCc
Q 001386 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS------A------------PCKQISVITCGDDKT 466 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s------~------------d~~~l~l~s~s~d~~ 466 (1088)
.|-+.|+|....||.+++||+..++....+.....-++..++..|. | .+....++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3567899999999999999999987654333333334455555552 2 122237888999999
Q ss_pred EEEEeCCCCceeEEec--cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEE
Q 001386 467 IKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 544 (1088)
Q Consensus 467 i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 544 (1088)
|.++++..|+....+. .|.+.|+++.++ .+-..|.+++.|+.+..|+................+.+++.+|||..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~--~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDA--QRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecc--cccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 9999999999888775 689999998774 344689999999999999999999999999888899999999999999
Q ss_pred EEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCC-----CCEEEEE-eCCCcEEEEEcCC
Q 001386 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KDQILAA-GDDHVIKIWDMNK 609 (1088)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~-s~dg~i~iwd~~~ 609 (1088)
++++. .|.+||+++++.+..|.||. ++|+++.|..+ |.+++++ ..+..+.+|-...
T Consensus 160 ~~as~------~ik~~~~~~kevv~~ftgh~---s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTASR------QIKVLDIETKEVVITFTGHG---SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eeccc------eEEEEEccCceEEEEecCCC---cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 98853 49999999999999999999 99999999877 7777774 3556677786654
No 275
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.21 E-value=2.1e-08 Score=112.72 Aligned_cols=209 Identities=9% Similarity=0.069 Sum_probs=125.3
Q ss_pred eCCcEEEEEcCCceeEEEecCCCCCe-----EEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccC----C---
Q 001386 817 SGGVISLYIVMTFKTILTIMPPSPTA-----TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK----R--- 884 (1088)
Q Consensus 817 ~dg~i~iwd~~~~~~~~~~~~~~~~i-----~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~----~--- 884 (1088)
.++.+..||.++|+.+.......... .+..+. ++ .++.+..+|.+..+|..+|+.+........ .
T Consensus 153 ~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~ 229 (377)
T TIGR03300 153 NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELER 229 (377)
T ss_pred CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhh
Confidence 36677777777777766654322211 112222 33 677788899999999999987654331100 0
Q ss_pred eeEEEECC--CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEE-EEeCCeEEEEEcC
Q 001386 885 VTGLVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL-LVHETHLAIYEAE 961 (1088)
Q Consensus 885 V~~l~~s~--dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~-~~~d~~i~vwd~~ 961 (1088)
+..+.-+| .+..+..++.+|.+..||..+++..-... ... ..... .++..+. ...++.++.+|..
T Consensus 230 ~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~---~~~-------~~~p~--~~~~~vyv~~~~G~l~~~d~~ 297 (377)
T TIGR03300 230 LVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD---ASS-------YQGPA--VDDNRLYVTDADGVVVALDRR 297 (377)
T ss_pred hhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec---cCC-------ccCce--EeCCEEEEECCCCeEEEEECC
Confidence 00011111 35577778889999999999876332111 111 11122 2344444 4678999999999
Q ss_pred cceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCE
Q 001386 962 ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQ 1041 (1088)
Q Consensus 962 ~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~ 1041 (1088)
+|+.+................ .+..|++++.+|.|.++|..+|+.+.++..... . -..+..+ . + +.
T Consensus 298 tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~---~----~~~sp~~--~--~-~~ 363 (377)
T TIGR03300 298 SGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGS---G----IASPPVV--V--G-DG 363 (377)
T ss_pred CCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC---c----cccCCEE--E--C-CE
Confidence 998776532111122222222 466888999999999999999999987763221 0 0011112 2 2 45
Q ss_pred EEEEeCCCcEEEE
Q 001386 1042 FAVGLTNGEVYVI 1054 (1088)
Q Consensus 1042 l~~~~~dg~v~~w 1054 (1088)
|++++.||.|+.|
T Consensus 364 l~v~~~dG~l~~~ 376 (377)
T TIGR03300 364 LLVQTRDGDLYAF 376 (377)
T ss_pred EEEEeCCceEEEe
Confidence 8889999999876
No 276
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.18 E-value=2.5e-08 Score=112.12 Aligned_cols=183 Identities=13% Similarity=0.063 Sum_probs=111.8
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEE
Q 001386 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1088)
Q Consensus 457 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 536 (1088)
.++.++.++.|..+|..+|+.+..+............ ++..++.++.+|.+..+|.++++................
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 5777888999999999999998776544332222222 345788889999999999998888776554332111111
Q ss_pred EccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccE-----EEEEEeCCCCEEEEEeCCCcEEEEEcCCCe
Q 001386 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV-----SVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1088)
Q Consensus 537 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1088)
. .+..++.+.. ++.++.||..+|+.+-.+.... ..+ ...... +..++.+..++.+..+|..+|+
T Consensus 143 v--~~~~v~v~~~----~g~l~a~d~~tG~~~W~~~~~~---~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~ 211 (377)
T TIGR03300 143 V--ANGLVVVRTN----DGRLTALDAATGERLWTYSRVT---PALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQ 211 (377)
T ss_pred E--ECCEEEEECC----CCeEEEEEcCCCceeeEEccCC---CceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCC
Confidence 2 2345555432 5669999999998877665433 111 111121 3467788889999999999998
Q ss_pred eeEEEeCCCCC--CCC---ceEEEec--CCCEEEEEeCCCcEEEEeCCCC
Q 001386 612 LLTTIDAGGGL--PEN---PRICFNK--NGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 612 ~~~~~~~~~~~--~~v---~~v~~s~--~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
.+......... ..+ ..+.-+| .+..+.+++.+|.+..+|..++
T Consensus 212 ~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 212 PLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred EeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence 77654322110 000 0000011 2345666666677777766544
No 277
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.10 E-value=5.4e-09 Score=101.53 Aligned_cols=251 Identities=15% Similarity=0.099 Sum_probs=160.8
Q ss_pred CceeeeecC---CCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCC---CeEEEEECCCCC
Q 001386 336 SPMSMDFHP---VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGS 409 (1088)
Q Consensus 336 ~V~~v~~sp---dg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~---~V~~l~~s~dg~ 409 (1088)
.+..+.|.. +|...++-+..+|.|.++...-........ . +..-.- .--++.|++-|.
T Consensus 71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~-----------~-----ls~~ki~~~~~lslD~~~~~~ 134 (339)
T KOG0280|consen 71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLR-----------G-----LSSKKISVVEALSLDISTSGT 134 (339)
T ss_pred ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeec-----------c-----cchhhhhheeeeEEEeeccCc
Confidence 556666642 444456666777888888765433222100 0 111111 244788999999
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCC-CCceeEE-eccCCcc
Q 001386 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYS-FEGHGAP 487 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~-~~~~~~~-~~~~~~~ 487 (1088)
.++++-.+|.+.+-+..... +.....++.|....+-+.|+....+ ++.+|+.|+.+..||++ .++.+.. .+.|...
T Consensus 135 ~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 135 KIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred eEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 99999999998855554433 3333468899999999999987776 79999999999999998 4555544 5678889
Q ss_pred EEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCC--EEEEEeeCCCCceeEEEEeCCCC
Q 001386 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR--RLFSCGTSKEGESFLVEWNESEG 565 (1088)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~~~~~~~~~~i~iwd~~~~ 565 (1088)
|.++.-++. .+.++++|+.|..|++||.++......-...++.|+.+..+|.-. .|+++-.++ ..+.+.+.+
T Consensus 213 V~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-----~ki~~~~~~ 286 (339)
T KOG0280|consen 213 VVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-----AKILDSSDK 286 (339)
T ss_pred eEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-----ceEEEeccc
Confidence 999876543 667999999999999999997665555555568899999998543 444443222 344444332
Q ss_pred --ceeEEEeccccccccEEEEEEeCCCCEEEEEe-CCCcEE-EEEcCCC
Q 001386 566 --AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIK-IWDMNKV 610 (1088)
Q Consensus 566 --~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~-iwd~~~~ 610 (1088)
+....+..+..|.+-...-.|......+++++ .|+.++ +|-..++
T Consensus 287 ~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 287 VLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 21122333332224444445533335567654 455544 6654443
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.08 E-value=6.5e-08 Score=120.00 Aligned_cols=255 Identities=11% Similarity=0.077 Sum_probs=161.2
Q ss_pred eEEEEecCCCEEEEE-e-CCcEEEEEcCCceeEEEecC--C------------CCCeEEEEEcCCCCcEEEEE-eCCCeE
Q 001386 802 PCFALSKNDAYLFSA-S-GGVISLYIVMTFKTILTIMP--P------------SPTATSLAFNPHDNNVIAIG-MDDSTI 864 (1088)
Q Consensus 802 ~~~~~s~dg~~l~~~-~-dg~i~iwd~~~~~~~~~~~~--~------------~~~i~~l~~sp~d~~~lasg-~~dg~i 864 (1088)
..+++++++..++++ . ++.|+++|.. ++.+..+.+ . -.....+++++ ++..|+++ ...+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 568898865444444 3 6789999986 444443332 1 12357899998 55555444 456789
Q ss_pred EEEEcCCceeeeeecc--c---------------cCCeeEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeee---ee
Q 001386 865 LIYNARSSEVISKLEG--H---------------SKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQ 923 (1088)
Q Consensus 865 ~lwd~~~~~~~~~l~~--h---------------~~~V~~l~~s~-dg~~las~s~Dg~i~iwd~~~~~~~~~~~---~~ 923 (1088)
+++|+.++.. .++.+ . -.....++|+| ++.++++.+.++.|++||..++......- ..
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999887653 33321 0 11246799999 56667777788999999998765321100 00
Q ss_pred cCCCCc---cCCCCeEEEEEcCCCCEEEE--EeCCeEEEEEcCcceeeeeee-----------cC---------CCcCEE
Q 001386 924 TPDGVM---TLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWF-----------PI---------SSVPIS 978 (1088)
Q Consensus 924 ~~~~~~---~~~~~v~~~~fs~dg~~l~~--~~d~~i~vwd~~~~~~~~~~~-----------~~---------h~~~v~ 978 (1088)
...+.. ........++|+|||+.|.+ ..++.|++||+.++....... .+ ......
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 000100 01124568999999986655 456899999998765321100 00 012346
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccc-cCCC--CccccccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001386 979 QATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY-LRPT--TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1055 (1088)
Q Consensus 979 ~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~ 1055 (1088)
.+++++||..+++-+.++.|++||..++........... ...+ ....--.|..++++| +|+++++-+.+++|++|+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 889999999888888999999999998876644321110 0000 001112467899999 789999999999999999
Q ss_pred CCCCC
Q 001386 1056 PNEPG 1060 (1088)
Q Consensus 1056 l~~~~ 1060 (1088)
+....
T Consensus 887 ~~~~~ 891 (1057)
T PLN02919 887 LNKGE 891 (1057)
T ss_pred CCCCc
Confidence 96644
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.07 E-value=9.1e-08 Score=118.77 Aligned_cols=260 Identities=12% Similarity=0.077 Sum_probs=163.5
Q ss_pred EEEEEecC-CceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEE
Q 001386 738 SRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA 816 (1088)
Q Consensus 738 ~~~~~s~~-g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 816 (1088)
..++++++ +..+++-..++.|.+++............. ......|. +. ...-.....+++++++..|+++
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g--~~G~~dG~------~~-~a~f~~P~GIavd~~gn~LYVa 641 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTG--EEGLRDGS------FE-DATFNRPQGLAYNAKKNLLYVA 641 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCC--CcCCCCCc------hh-ccccCCCcEEEEeCCCCEEEEE
Confidence 45788765 555566666788888886432110000000 00000000 00 0122346789999998877776
Q ss_pred e--CCcEEEEEcCCceeEEEecCC-----------------CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeee
Q 001386 817 S--GGVISLYIVMTFKTILTIMPP-----------------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 877 (1088)
Q Consensus 817 ~--dg~i~iwd~~~~~~~~~~~~~-----------------~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~ 877 (1088)
+ ++.|+++|..++. +.++.+. -.....++|+|+++.++++.+.++.|++||..++... .
T Consensus 642 Dt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~ 719 (1057)
T PLN02919 642 DTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-V 719 (1057)
T ss_pred eCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-E
Confidence 5 5679999987754 3333210 1234679999966777777788899999999877543 2
Q ss_pred ecc---------c------cCCeeEEEECCCCCEE-EEEeCCCcEEEEEcCCCceeeee--------eeecC---CC--C
Q 001386 878 LEG---------H------SKRVTGLVFSDALNIL-VSSGGDAQIFVWDVDGWGIQTCR--------SLQTP---DG--V 928 (1088)
Q Consensus 878 l~~---------h------~~~V~~l~~s~dg~~l-as~s~Dg~i~iwd~~~~~~~~~~--------~~~~~---~~--~ 928 (1088)
+.+ + -.....|+++|+|+.| ++.+.++.|++||+.++...... .+... .+ .
T Consensus 720 ~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~ 799 (1057)
T PLN02919 720 FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGS 799 (1057)
T ss_pred EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchh
Confidence 211 1 1235679999999854 45566789999999876522100 00000 00 0
Q ss_pred ccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeeeeecC------------CCcCEEEEEEeeCCCEEEEEeCC
Q 001386 929 MTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSFVD 995 (1088)
Q Consensus 929 ~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~s~s~d 995 (1088)
.........++|+++|+.+++ ..++.|++||..++......-.+ +-.....+++++||+.+++-+.+
T Consensus 800 ~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N 879 (1057)
T PLN02919 800 EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN 879 (1057)
T ss_pred hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC
Confidence 000113468999999998777 57789999999887765332111 22357889999999988888899
Q ss_pred CcEEEEEcCCCce
Q 001386 996 GTLSIHEASNLEV 1008 (1088)
Q Consensus 996 g~v~vwd~~~~~~ 1008 (1088)
+.|++||+.+++.
T Consensus 880 n~Irvid~~~~~~ 892 (1057)
T PLN02919 880 SLIRYLDLNKGEA 892 (1057)
T ss_pred CEEEEEECCCCcc
Confidence 9999999999875
No 280
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=4.2e-08 Score=109.47 Aligned_cols=207 Identities=14% Similarity=0.031 Sum_probs=130.8
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcc---cCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~---dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 401 (1088)
...+.+.... ......|||||+++++..+. +..|.++|+.+|+... +....+.+..
T Consensus 179 ~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~ 237 (419)
T PRK04043 179 TYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVV 237 (419)
T ss_pred CceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEe
Confidence 3344444443 77889999999864554333 3579999999887553 2234556677
Q ss_pred EEECCCCCEEEEEeC---CCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCC--cEEEEeCCCCc
Q 001386 402 VVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGS 476 (1088)
Q Consensus 402 l~~s~dg~~las~~~---dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~--~i~vwd~~~~~ 476 (1088)
.+|||||+.|+.... +..|.++|+.+++. + .+..+........|+|||+.+++.+ ...+ .|.+.|+.+|+
T Consensus 238 ~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~S-dr~g~~~Iy~~dl~~g~ 312 (419)
T PRK04043 238 SDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFVS-DRLGYPNIFMKKLNSGS 312 (419)
T ss_pred eEECCCCCEEEEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEEE-CCCCCceEEEEECCCCC
Confidence 889999998876532 34688889888753 2 2444443344568999999644433 2333 68888988887
Q ss_pred eeEEeccCCccEEEEeeeeeCCceEEEEEecC---------CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001386 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1088)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 547 (1088)
..+.... ... ...| +++|+.++..+.. ..|.+.|++++.... +... .......|+|||+.++..
T Consensus 313 ~~rlt~~-g~~--~~~~--SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~ 385 (419)
T PRK04043 313 VEQVVFH-GKN--NSSV--STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFI 385 (419)
T ss_pred eEeCccC-CCc--CceE--CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEE
Confidence 6433221 111 1245 5677777766543 257778887765433 3222 233358899999999888
Q ss_pred eeCCCCceeEEEEeCCCC
Q 001386 548 GTSKEGESFLVEWNESEG 565 (1088)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~ 565 (1088)
... .+...+.+.++...
T Consensus 386 ~~~-~~~~~L~~~~l~g~ 402 (419)
T PRK04043 386 KYL-GNQSALGIIRLNYN 402 (419)
T ss_pred Ecc-CCcEEEEEEecCCC
Confidence 654 34556777777543
No 281
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.04 E-value=5e-08 Score=95.00 Aligned_cols=199 Identities=15% Similarity=0.113 Sum_probs=133.7
Q ss_pred eeEEEEecCCCEEEEEe-CCcEEEEEcCCce--eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcC-Cceeee
Q 001386 801 VPCFALSKNDAYLFSAS-GGVISLYIVMTFK--TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-SSEVIS 876 (1088)
Q Consensus 801 v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~-~~~~~~ 876 (1088)
..++.|++.+..++++. +|.+.+-+..... .++..+.|.-++....|+..+.+++.+|++|+.+.-||++ .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 45677888888888775 7888866555443 3447889999999999998778899999999999999999 344444
Q ss_pred e-eccccCCeeEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCC--EEEEEeC
Q 001386 877 K-LEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT--RFLLVHE 952 (1088)
Q Consensus 877 ~-l~~h~~~V~~l~~s~-dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~--~l~~~~d 952 (1088)
. .+-|...|.+|.-|| ++.++++|+.|..|++||...-. +++ ......+.|+.+..+|.-. .|+++.-
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~----kPl----~~~~v~GGVWRi~~~p~~~~~lL~~CMh 275 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG----KPL----FKAKVGGGVWRIKHHPEIFHRLLAACMH 275 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc----Ccc----ccCccccceEEEEecchhhhHHHHHHHh
Confidence 3 456889999999886 57899999999999999998521 111 1112225799999998643 4444444
Q ss_pred CeEEEEEcCcceee----eeeecCCCcCEEEEEEeeCCCEEEEEe-CCCcEE-EEEcCCCc
Q 001386 953 THLAIYEAEELTCL----KQWFPISSVPISQATFSCDCRMVFTSF-VDGTLS-IHEASNLE 1007 (1088)
Q Consensus 953 ~~i~vwd~~~~~~~----~~~~~~h~~~v~~l~fs~dg~~l~s~s-~dg~v~-vwd~~~~~ 1007 (1088)
+..+|-+.+.+..- ......|.+-...-.|..-...|+|++ .|+.++ +|-..++.
T Consensus 276 ~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 276 NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred cCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 44555555543221 112333444333334422235677765 566644 77655554
No 282
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=1.4e-09 Score=113.75 Aligned_cols=244 Identities=13% Similarity=0.186 Sum_probs=170.6
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCC-ccc---ceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcE
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DAR---QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~-~~~---~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i 467 (1088)
+.||...|..++--.+.+-+++++.|.+|++|.++... .+. ...++..|..+|.++.|..+-+ .+++ .||.|
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~S--cD~gi 806 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIAS--CDGGI 806 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeee--ccCcc
Confidence 78999999999888888899999999999999997432 122 3457889999999999999987 5554 48999
Q ss_pred EEEeCCCCceeEEecc--CCccEEEEeeeeeCCceEEEEE-ecCCeEEEEECCCCCceEEec-----CCCCceEEEEEcc
Q 001386 468 KVWDAVTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSLGARVDYD-----APGLGCTRMAYSA 539 (1088)
Q Consensus 468 ~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~s~ 539 (1088)
.+||.--|+.+..+.. ..+.+..+...++-+...++.| +...+|+++|.+..+-...+. .++..+.++++.+
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 9999988887754321 1222222222234345566655 778999999998876544433 3445688999999
Q ss_pred CCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEE-EEcCCCeeeEEEeC
Q 001386 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI-WDMNKVQLLTTIDA 618 (1088)
Q Consensus 540 ~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i-wd~~~~~~~~~~~~ 618 (1088)
.|++++++-. ++.|.+.|.++|+.+...+... .....++ .|..+.++....|.++.+ |..-+|......+.
T Consensus 887 ~GN~lAa~LS----nGci~~LDaR~G~vINswrpme---cdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kp 958 (1034)
T KOG4190|consen 887 KGNKLAAALS----NGCIAILDARNGKVINSWRPME---CDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKP 958 (1034)
T ss_pred CcchhhHHhc----CCcEEEEecCCCceeccCCccc---chhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCC
Confidence 9999998765 5669999999999887766544 2333332 355567777778889988 99888776665543
Q ss_pred CCCCCCCceEEEecCCCEEEEEeCCCcEEEEeC
Q 001386 619 GGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1088)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1088)
.... .--.-.-|.-++++.....+.+|.-
T Consensus 959 ppep----ahflqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 959 PPEP----AHFLQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred CCcc----hhhhhccCceeEEeccCcEEEEEec
Confidence 2211 1111123556777776667777743
No 283
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=99.00 E-value=0.00018 Score=82.64 Aligned_cols=230 Identities=13% Similarity=0.156 Sum_probs=131.5
Q ss_pred CEEEEEeCCcEEEEEcCCceeE--EEecCCCCCeEEEEEcCCCCcEEEEEeCC--------------CeEEEEEcCCcee
Q 001386 811 AYLFSASGGVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDD--------------STILIYNARSSEV 874 (1088)
Q Consensus 811 ~~l~~~~dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~d--------------g~i~lwd~~~~~~ 874 (1088)
..++++..+.+++.-++.-+.+ +++. -......+++.+ ....+++.+.- ..++++|-.|-+.
T Consensus 685 d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~v 762 (1096)
T KOG1897|consen 685 DSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEV 762 (1096)
T ss_pred ceEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCceeE
Confidence 4567777777777776643322 3322 223455666665 33444443321 1467777776655
Q ss_pred eeeecc--c--cCCeeEEEECCC-CCEEEEEeC----------CCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEE
Q 001386 875 ISKLEG--H--SKRVTGLVFSDA-LNILVSSGG----------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 939 (1088)
Q Consensus 875 ~~~l~~--h--~~~V~~l~~s~d-g~~las~s~----------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 939 (1088)
+...+- . .-.|.++.|..| +.++++|.. .|.|.++.+..........-...+| .+.++
T Consensus 763 l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G------av~aL- 835 (1096)
T KOG1897|consen 763 LSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG------AVYAL- 835 (1096)
T ss_pred EeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc------ceeeh-
Confidence 443321 1 123555568777 677777642 3667777776622111111111111 12222
Q ss_pred EcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccC
Q 001386 940 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLR 1019 (1088)
Q Consensus 940 fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~ 1019 (1088)
--=...++++-...|++|+..+++.++. ...|..++..+...-.|..+++|.-=+.+.+-.....+-.-...+..+.+
T Consensus 836 -~~fngkllA~In~~vrLye~t~~~eLr~-e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p 913 (1096)
T KOG1897|consen 836 -VEFNGKLLAGINQSVRLYEWTTERELRI-ECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNP 913 (1096)
T ss_pred -hhhCCeEEEecCcEEEEEEccccceehh-hhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCc
Confidence 2223345556667899999998876665 55678889999999999999999887777665544443211222222222
Q ss_pred CCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 1020 PTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 1020 ~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~ 1060 (1088)
-|..++.+- |+..++.+..+|.+++-......
T Consensus 914 -------~Wmtaveil--~~d~ylgae~~gNlf~v~~d~~~ 945 (1096)
T KOG1897|consen 914 -------NWMTAVEIL--DDDTYLGAENSGNLFTVRKDSDA 945 (1096)
T ss_pred -------cceeeEEEe--cCceEEeecccccEEEEEecCCC
Confidence 244556555 45778888889999888775443
No 284
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.99 E-value=2.1e-07 Score=91.40 Aligned_cols=206 Identities=18% Similarity=0.156 Sum_probs=141.1
Q ss_pred EEEecCCCEEEEEeCCcEEEEEcCCc--eeEEE---ecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee
Q 001386 804 FALSKNDAYLFSASGGVISLYIVMTF--KTILT---IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 878 (1088)
Q Consensus 804 ~~~s~dg~~l~~~~dg~i~iwd~~~~--~~~~~---~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l 878 (1088)
++.+.||++||+..|..|.|-..++. ..+.+ .+.....=+.++||| |+.+||.+...|+|++||+....+ ..+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~l-f~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSEL-FVI 80 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEeccccee-EEc
Confidence 67789999999999999888776542 12222 233344568899999 899999999999999999985433 333
Q ss_pred cc-c------cCCeeEEEECCC------CCEEEEEeCCCcEEEEEcCCCc---eeeeeeeecCCCCccCCCCeEEEEEcC
Q 001386 879 EG-H------SKRVTGLVFSDA------LNILVSSGGDAQIFVWDVDGWG---IQTCRSLQTPDGVMTLAPSETHIQFHK 942 (1088)
Q Consensus 879 ~~-h------~~~V~~l~~s~d------g~~las~s~Dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~fs~ 942 (1088)
.. + ...|..+.|.+- ...|.....+|.++=|-+..+. -.....+....... ..|.++.++|
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp---~Gi~~~vy~p 157 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP---HGINSAVYHP 157 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC---CceeEEEEcC
Confidence 22 2 346777777542 1246667778888888775421 11122222222222 3799999999
Q ss_pred CCCEEEEEe-----C-------CeEEEEEcCcceeeeee--------------------e--------cCCCcCEEEEEE
Q 001386 943 DQTRFLLVH-----E-------THLAIYEAEELTCLKQW--------------------F--------PISSVPISQATF 982 (1088)
Q Consensus 943 dg~~l~~~~-----d-------~~i~vwd~~~~~~~~~~--------------------~--------~~h~~~v~~l~f 982 (1088)
..++|++++ + -.+..|.+-++.+-... . ......|..|..
T Consensus 158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl 237 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL 237 (282)
T ss_pred CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE
Confidence 999988841 1 13677765544321110 0 112678899999
Q ss_pred eeCCCEEEEEeCCCcEEEEEcCCCceEEEecc
Q 001386 983 SCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1014 (1088)
Q Consensus 983 s~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 1014 (1088)
||||+.||+...+|.|.+|++++..+...+..
T Consensus 238 SPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 238 SPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred CCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 99999999999999999999999999888763
No 285
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.97 E-value=0.00023 Score=81.81 Aligned_cols=622 Identities=10% Similarity=0.055 Sum_probs=296.4
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC----
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---- 407 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d---- 407 (1088)
|..+-..|+.+-++| +|.+||.-|.=.+-.+.+-...... ....+. + ..-++|..++.-.+
T Consensus 304 ge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy----------~~ilet--~-~NLgPI~Dm~Vvd~d~q~ 368 (1096)
T KOG1897|consen 304 GETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSY----------VVILET--F-VNLGPIVDMCVVDLDRQG 368 (1096)
T ss_pred CCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCch----------hhhhhh--c-ccccceeeEEEEeccccC
Confidence 334345666677777 5788888766566555543322100 000000 1 12357777766542
Q ss_pred CCEEEEEe---CCCEEEEEEccCCCcccceeEeccCCCCEEEEE--ecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEec
Q 001386 408 GSLLGVAY---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA--FSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1088)
Q Consensus 408 g~~las~~---~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~--~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~ 482 (1088)
+..+++++ .||++++..-.-+-.......+.| -..++.+. +.+.-.. +++.+-. +.-++..+...-......
T Consensus 369 q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~-~eTrvl~i~~e~ee~~~~ 445 (1096)
T KOG1897|consen 369 QGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFI-SETRVLNISEEVEETEDP 445 (1096)
T ss_pred CceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEec-cceEEEEEccceEEeccc
Confidence 34566654 578899876544322222223445 34566666 4443332 3333322 233444433221111122
Q ss_pred cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001386 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 562 (1088)
+.......+..+.- +++.|+=.. ...||+++-. .....+..+. .++....+.+...++.++. ...+...++
T Consensus 446 gf~~~~~Tif~S~i-~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~-~~ti~~~~~n~sqVvvA~~----~~~l~y~~i 516 (1096)
T KOG1897|consen 446 GFSTDEQTIFCSTI-NGNQLVQVT-SNSIRLVSSA--GLRSEWRPPG-KITIGVVSANASQVVVAGG----GLALFYLEI 516 (1096)
T ss_pred cccccCceEEEEcc-CCceEEEEe-cccEEEEcch--hhhhcccCCC-ceEEEEEeecceEEEEecC----ccEEEEEEe
Confidence 22222222222211 222222221 2235555432 2222222333 3333344444445555442 223555555
Q ss_pred CCCceeEEEeccccccccEEEEEEeCCC------CEEEEEeCCCcEEEE-EcCCCeeeEEEeCCCC--CCCCceEEEecC
Q 001386 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAK------DQILAAGDDHVIKIW-DMNKVQLLTTIDAGGG--LPENPRICFNKN 633 (1088)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~s~dg~i~iw-d~~~~~~~~~~~~~~~--~~~v~~v~~s~~ 633 (1088)
..+......... -...|.|+.++|-| ++++.|..+..+.+. -..+...+........ ...|.-.+|-.|
T Consensus 517 ~~~~l~e~~~~~--~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d 594 (1096)
T KOG1897|consen 517 EDGGLREVSHKE--FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGD 594 (1096)
T ss_pred eccceeeeeehe--ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeecc
Confidence 544422222211 23678999998742 256677665554443 3334443333322211 112334455557
Q ss_pred CCEEEEEeCCCcEEEEe--CCCCCccccc--ccccCcceeeeecCC---------CcceeccccCCceeecCCC------
Q 001386 634 GTLLAVIANENRIKILE--TPESNSVDAA--GVLSDNLRKLSVNPI---------STVTGAGIANGSVSVNEDP------ 694 (1088)
Q Consensus 634 ~~~l~~~~~dg~i~iwd--~~~~~~~~~~--~~~~~~v~~~~~~p~---------~~~~~~~~~~~~~~~~~~~------ 694 (1088)
..+|.++..||.+.-+. ..++..-... .....++.--.|+.. ......-...+...+....
T Consensus 595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~ 674 (1096)
T KOG1897|consen 595 IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNH 674 (1096)
T ss_pred ceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhh
Confidence 88999999999987654 4444222211 111112211112111 1111222222222222111
Q ss_pred -----CCC-CCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCC
Q 001386 695 -----KED-VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL 768 (1088)
Q Consensus 695 -----~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~ 768 (1088)
++. +..++++ ..+.+++..++.-.....+.+. -......+++.+....+.+.+.-.....=.. .
T Consensus 675 ~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqkl~irtvp-----l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~----~ 744 (1096)
T KOG1897|consen 675 MCPFNSDAYPDSLASA-NGGALTIGTIDEIQKLHIRTVP-----LGESPRRICYQESSLTFGVLSNRIESSAEYY----G 744 (1096)
T ss_pred hcccccccCCceEEEe-cCCceEEEEecchhhcceeeec-----CCCChhheEecccceEEEEEecccccchhhc----C
Confidence 111 1122222 2244555544433333333322 1233455666664443333332211110000 0
Q ss_pred CCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecC-CCEEEEEe-----C------CcEEEEEcCCceeEEEec
Q 001386 769 TLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSAS-----G------GVISLYIVMTFKTILTIM 836 (1088)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~~~~-----d------g~i~iwd~~~~~~~~~~~ 836 (1088)
.......++++|..+-..+...++........+.+..|..| +.++++|. | |.|.+|....++.+....
T Consensus 745 ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~ 824 (1096)
T KOG1897|consen 745 EEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVA 824 (1096)
T ss_pred CcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeee
Confidence 00011123445555444333333322222233444557777 77888774 1 779999888754444443
Q ss_pred CC--CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 001386 837 PP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 914 (1088)
Q Consensus 837 ~~--~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~ 914 (1088)
.+ .+.+.++..- +|++||. -...|++|++.+.+.++.-..|..++..+...-.|..++.|.--+.+.+-.....
T Consensus 825 e~~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~ 900 (1096)
T KOG1897|consen 825 ETVVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGD 900 (1096)
T ss_pred eeeeccceeehhhh--CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEecc
Confidence 33 2445554433 5777764 4668999999998777777778999999999999999999988887777665543
Q ss_pred ceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcc------ee----eeeeec-------CCCcCE
Q 001386 915 GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL------TC----LKQWFP-------ISSVPI 977 (1088)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~------~~----~~~~~~-------~h~~~v 977 (1088)
+ .......+...+ .+++.+.+-.+..++.+-.++.+.+....+. +. ...+.. .|..-|
T Consensus 901 e---g~f~evArD~~p--~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv 975 (1096)
T KOG1897|consen 901 E---GNFEEVARDYNP--NWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLV 975 (1096)
T ss_pred C---CceEEeehhhCc--cceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceE
Confidence 3 112222222211 4688888888888888877777666644321 00 111111 133333
Q ss_pred EEE--EEeeCCCEEEEEeCCCcEEEE
Q 001386 978 SQA--TFSCDCRMVFTSFVDGTLSIH 1001 (1088)
Q Consensus 978 ~~l--~fs~dg~~l~s~s~dg~v~vw 1001 (1088)
.++ .-+|-+..+..|+.+|.|-+-
T Consensus 976 ~~~~~s~~~~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen 976 MQLGDSMIPLEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred eeccccccCCCCcEEEEEccceEEEE
Confidence 331 223444557778889988654
No 286
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=5.1e-09 Score=109.60 Aligned_cols=296 Identities=10% Similarity=0.117 Sum_probs=186.3
Q ss_pred hhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCC-cceeeeceeeeeeccccccceeeeecCCCCCeEEE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 402 (1088)
.-.+..+.||+..|.+++--.+.. -+++++.|.+|++|.+... ..+.+ +.|..+ +..|..+|..+
T Consensus 725 ~irL~nf~GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~t--------saCQfT-----Y~aHkk~i~~i 790 (1034)
T KOG4190|consen 725 HIRLCNFTGHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGT--------SACQFT-----YQAHKKPIHDI 790 (1034)
T ss_pred eeeeecccCcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCcccc--------ceeeeE-----hhhccCcccce
Confidence 344566789999999987666555 3789999999999999753 22222 234444 44599999999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCC-CCcEEEEEEeCCCcEEEEeCCCCceeEEe
Q 001386 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1088)
Q Consensus 403 ~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d-~~~l~l~s~s~d~~i~vwd~~~~~~~~~~ 481 (1088)
.|-.|-++++++ ||.|++||.--|..+.+...-..| +.+..+...++ .+.++++.++...+|+++|.+.++-...+
T Consensus 791 gfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~ 867 (1034)
T KOG4190|consen 791 GFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCEL 867 (1034)
T ss_pred eeeeccceeeec--cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeE
Confidence 999999999875 778999998877765533222222 33333433343 34435555588899999999988877666
Q ss_pred c-----cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCcee
Q 001386 482 E-----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1088)
Q Consensus 482 ~-----~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 556 (1088)
+ +..+.+.++++.+ .|+.++.+-..|.|.+.|.+++..+............++ .|..+.|+.... +..
T Consensus 868 kVcna~~Pna~~R~iaVa~--~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sal----dHs 940 (1034)
T KOG4190|consen 868 KVCNAPGPNALTRAIAVAD--KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSAL----DHS 940 (1034)
T ss_pred EeccCCCCchheeEEEecc--CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcc----cce
Confidence 4 3345677888744 567899999999999999998876665544333322222 244445554432 333
Q ss_pred EEE-EeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCC----CeeeEEEeCCCCCCCCceEEEe
Q 001386 557 LVE-WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK----VQLLTTIDAGGGLPENPRICFN 631 (1088)
Q Consensus 557 i~i-wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~v~~s 631 (1088)
+.+ |....|......+... .+..- ...-|..++++.....+.+|.-.. ...+..+....-....++++.-
T Consensus 941 laVnWhaldgimh~q~kppp---epahf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~L 1015 (1034)
T KOG4190|consen 941 LAVNWHALDGIMHLQDKPPP---EPAHF--LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPL 1015 (1034)
T ss_pred eEeeehhcCCeeeeccCCCC---cchhh--hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeec
Confidence 555 7766665544443322 11111 112355677766666677774221 1222233333222335677777
Q ss_pred cCCCEEEEEeCCCcEEE
Q 001386 632 KNGTLLAVIANENRIKI 648 (1088)
Q Consensus 632 ~~~~~l~~~~~dg~i~i 648 (1088)
|-..-+..|...|.|.+
T Consensus 1016 PLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1016 PLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred cccchhhccCCCCceee
Confidence 76666777888888765
No 287
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.94 E-value=6.5e-09 Score=112.87 Aligned_cols=211 Identities=17% Similarity=0.276 Sum_probs=149.1
Q ss_pred eeeecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcE
Q 001386 389 TALVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1088)
Q Consensus 389 ~~~~~~h~~~V~~l~~s~-dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i 467 (1088)
..++.||+..|+.+.|.| .-..||+++.|..+..||+.+.. +.+.....-...-..++|+.... .+.+.+..+.|
T Consensus 107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~--~p~ys~~~w~s~asqVkwnyk~p--~vlasshg~~i 182 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH--RPFYSTSSWRSAASQVKWNYKDP--NVLASSHGNDI 182 (1081)
T ss_pred EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC--cceeeeecccccCceeeecccCc--chhhhccCCce
Confidence 345889999999999999 45788999999999999998865 33334445555677899987766 35556667789
Q ss_pred EEEeCCCC-ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEe-cCCCCceEEEEEccCCCEEE
Q 001386 468 KVWDAVTG-SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLF 545 (1088)
Q Consensus 468 ~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~ 545 (1088)
.+||.+.| .++..+++|...|+.+.|..... ..+.+.+.||+|+.||.+........ .....++..-++.|-|.-.+
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~ 261 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC 261 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeE
Confidence 99999876 56789999999999998854433 36888999999999999865543322 23344666677777665443
Q ss_pred EEeeCCCCceeEEE---------EeCCC-CceeEEEeccccccccEEEEEEeCC----------CCEEEEEeCCCcEEEE
Q 001386 546 SCGTSKEGESFLVE---------WNESE-GAIKRTYQGLQLQHNSVSVVHFDTA----------KDQILAAGDDHVIKIW 605 (1088)
Q Consensus 546 ~~~~~~~~~~~i~i---------wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~l~~~s~dg~i~iw 605 (1088)
.--.. |...+.+ |+..+ .+.++++.||. +.|....|-.. .-.|++-+.|..+++|
T Consensus 262 ~mp~~--G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~---D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 262 IMPMV--GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHD---DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred ecccc--CCeeeeeccccchhhhhccccCCcceeeecCcc---hHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 32221 1223333 44333 35788999988 66655444322 2368999999999999
Q ss_pred EcCC
Q 001386 606 DMNK 609 (1088)
Q Consensus 606 d~~~ 609 (1088)
-+.+
T Consensus 337 pI~~ 340 (1081)
T KOG0309|consen 337 PIDS 340 (1081)
T ss_pred eccH
Confidence 8764
No 288
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=2.6e-07 Score=102.23 Aligned_cols=485 Identities=15% Similarity=0.127 Sum_probs=256.5
Q ss_pred CCeEEEEECCCCCEEEEEe----CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeC
Q 001386 397 VSVNRVVWSPDGSLLGVAY----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1088)
Q Consensus 397 ~~V~~l~~s~dg~~las~~----~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~ 472 (1088)
+.-+-..|+|...++|+++ ..|+|.||- ++|+.-+.. +..- .+++++|+|..- +|+.|-.-|.+.+|..
T Consensus 16 avsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~P~---hatSLCWHpe~~--vLa~gwe~g~~~v~~~ 88 (1416)
T KOG3617|consen 16 AVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TYPV---HATSLCWHPEEF--VLAQGWEMGVSDVQKT 88 (1416)
T ss_pred ccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-ccce---ehhhhccChHHH--HHhhccccceeEEEec
Confidence 3344467999999999886 457788874 455533321 2222 356799999876 7888888999999997
Q ss_pred CCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEec--CC--CC--ceEEEEEccCCCEEE-
Q 001386 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--AP--GL--GCTRMAYSANGRRLF- 545 (1088)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~--~~--~v~~~~~s~~g~~l~- 545 (1088)
.+.+.-.....|..+|..+.| +++|..++++..-|.|.+|..+-........ .| +. ...+...++++.-++
T Consensus 89 ~~~e~htv~~th~a~i~~l~w--S~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~ 166 (1416)
T KOG3617|consen 89 NTTETHTVVETHPAPIQGLDW--SHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFK 166 (1416)
T ss_pred CCceeeeeccCCCCCceeEEe--cCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhh
Confidence 777666666779999999999 5577899999999999999877443322211 11 11 234555566643221
Q ss_pred ----EEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCC
Q 001386 546 ----SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621 (1088)
Q Consensus 546 ----~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1088)
+.+.+..+-....-|..++.. +... =.-.|+|..++.++.+|+|+--|- .|+..........
T Consensus 167 laKaaVtgDe~alD~~fnwk~~~a~--rs~~-----------ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~ 232 (1416)
T KOG3617|consen 167 LAKAAVTGDESALDEPFNWKESLAE--RSDE-----------KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE 232 (1416)
T ss_pred hhhhhccCchhhhcccccCccchhh--cccc-----------ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch
Confidence 111111111112222211111 0000 013478888999999999888774 4555555554322
Q ss_pred CCCCceEEEecCCCEEEEEeCCCcEEEEeCC-CCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCc
Q 001386 622 LPENPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP 700 (1088)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1088)
..+-|.+-..-+++...+-.+.++-+. +|.... +..+.++-. .| ...|.
T Consensus 233 ----vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee--------~~~vk~sgk-----~G------------grqGg- 282 (1416)
T KOG3617|consen 233 ----VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEE--------RCAVKVSGK-----LG------------GRQGG- 282 (1416)
T ss_pred ----HHHHHhcccceEEEEeeeceeeEEEecCCCchHH--------hhhhhhccc-----cC------------CccCc-
Confidence 234455544444444444444443322 221111 000011000 00 00111
Q ss_pred ccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccC
Q 001386 701 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQ 780 (1088)
Q Consensus 701 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 780 (1088)
++.+...|.++- ...+. ......+.+++++..+..+.++...|.+.+|.-...... ....+..|.
T Consensus 283 iA~sEssGvLr~--------~eKyg-----~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~--g~p~~d~w~ 347 (1416)
T KOG3617|consen 283 IACSESSGVLRK--------SEKYG-----LELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQ--GDPTIDVWT 347 (1416)
T ss_pred cccccccccccC--------Ccchh-----hhcCCceEEEEEeccceEEEecccCCcEEEeeecCcccc--CCCCcceEE
Confidence 233322221110 00000 124567899999999999999999999999963322111 111223333
Q ss_pred CCCCCcceeeccCCCCCCCCeeEEEEecC---------------------------------------------------
Q 001386 781 PRHGPQFMVNDTTDSNSQEAVPCFALSKN--------------------------------------------------- 809 (1088)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--------------------------------------------------- 809 (1088)
+.+.. ...+.|+.+.|.|-
T Consensus 348 l~~~~----------e~~g~I~~i~Wg~~k~~~avn~~~~v~ll~E~~l~~~h~~~~~A~q~ss~S~~L~hc~sGv~~~l 417 (1416)
T KOG3617|consen 348 LNGKR----------ESLGKISLIRWGPIKSTAAVNTEEDVVLLGENSLTVKHRGKMAAIQTSSNSFTLLHCTSGVSQDL 417 (1416)
T ss_pred ecCch----------hhccceEEEEeccccchhhhhhhhheeeeccCchHHHHhhhhHHhhhcCCceEEEeeccchhhhh
Confidence 32221 01112222222221
Q ss_pred ------------CCEEEEEeCCcEEEEEcCCceeEEE--ecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceee
Q 001386 810 ------------DAYLFSASGGVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 875 (1088)
Q Consensus 810 ------------g~~l~~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~ 875 (1088)
...+++..+.+|..|++.+...... ........+++++. +.++...++++ |.++.+. |...
T Consensus 418 ~~~~~~~gi~l~e~~lvvwNgr~v~~y~lq~SG~la~~~~~tF~cet~~la~~--nqN~ycies~~--Vfvrt~q-Gtv~ 492 (1416)
T KOG3617|consen 418 KLSIPSAGICLGEKQLVVWNGRTVVTYDLQTSGSLATIQCTTFSCETTSLAIV--NQNLYCIESDK--VFVRTLQ-GTVR 492 (1416)
T ss_pred hhccchhhheeccceEEEEcCceEEEEEecccchhHHHhhhhhccccchHhHh--hcceEEeccCc--EEEEecc-hhhh
Confidence 1123333344455555532111110 11111223344444 34455555544 4444443 3333
Q ss_pred ee--eccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE---E
Q 001386 876 SK--LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL---V 950 (1088)
Q Consensus 876 ~~--l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~---~ 950 (1088)
+. +..-.+.|.-+.++ |.+++.....+.++-+|+...+...........+.....+.+..+..+..|..+.+ +
T Consensus 493 q~i~~seiEg~~~~ldi~--g~~l~v~t~~~~~k~~dvsr~e~ka~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~ 570 (1416)
T KOG3617|consen 493 QEISLSEIEGVVVLLDIM--GELLIVQTVSTVAKRLDVSRAELKAVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAA 570 (1416)
T ss_pred hhccchhccCceehhhhc--cceeEEeehHHHHHHhhhhhhcccccccccccccccCCcCceEEEeeccCCCCcccchhh
Confidence 32 23344555555554 78898888888888888887665544444444444444456788888887776654 2
Q ss_pred eC----CeEEEEEcCcceee
Q 001386 951 HE----THLAIYEAEELTCL 966 (1088)
Q Consensus 951 ~d----~~i~vwd~~~~~~~ 966 (1088)
.+ .++..||..+++..
T Consensus 571 ~~~~pisTl~~~DFe~s~~~ 590 (1416)
T KOG3617|consen 571 RKMAPISTLFCWDFEQSRFQ 590 (1416)
T ss_pred ccCCCcceeEeeccchhhHH
Confidence 22 47999999987654
No 289
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.92 E-value=6.2e-09 Score=123.91 Aligned_cols=201 Identities=16% Similarity=0.259 Sum_probs=155.6
Q ss_pred cccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCC
Q 001386 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1088)
Q Consensus 330 l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~ 409 (1088)
+..|-..|.++.=+|... +.++|+.||.|++|.+..++.+.... -.|. ..|+.+.|+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~r-----------------t~g~-s~vtr~~f~~qGn 2264 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFR-----------------TAGN-SRVTRSRFNHQGN 2264 (2439)
T ss_pred eecccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEEee-----------------ccCc-chhhhhhhcccCC
Confidence 334556788888899888 57899999999999999998775421 2233 8899999999999
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEe---CCCcEEEEeCCC-C--ceeEEecc
Q 001386 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG---DDKTIKVWDAVT-G--SRTYSFEG 483 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s---~d~~i~vwd~~~-~--~~~~~~~~ 483 (1088)
.+..+..||.+.+|.+.. +.....+.|......+.|-. . .+++++ .++.+.+||.-- + .+++ ..
T Consensus 2265 k~~i~d~dg~l~l~q~~p----k~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~ 2334 (2439)
T KOG1064|consen 2265 KFGIVDGDGDLSLWQASP----KPYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVH--TC 2334 (2439)
T ss_pred ceeeeccCCceeecccCC----cceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceee--ee
Confidence 999999999999999983 44446778999999999986 3 456654 467899999542 2 2333 77
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 563 (1088)
|.+.++++++.| ..++|++|+.+|.|++||++..+.+..+.. +. ...++++++. ++.+.||++.
T Consensus 2335 H~~gaT~l~~~P--~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss----~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2335 HDGGATVLAYAP--KHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSS----EGNIKIWRLS 2398 (2439)
T ss_pred cCCCceEEEEcC--cceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCc----ccceEEEEcc
Confidence 999999999966 457999999999999999988776665543 33 4456666654 6669999999
Q ss_pred CCceeEEEeccc
Q 001386 564 EGAIKRTYQGLQ 575 (1088)
Q Consensus 564 ~~~~~~~~~~~~ 575 (1088)
....++.+....
T Consensus 2399 ~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2399 EFGLLHTFPSEH 2410 (2439)
T ss_pred ccchhhcCchhh
Confidence 888877776533
No 290
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=7.4e-07 Score=99.57 Aligned_cols=211 Identities=9% Similarity=0.013 Sum_probs=130.1
Q ss_pred cEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCc-EEEEEeCC---CeEEEEEcCCceeeeeeccccCCeeEEEECCCCC
Q 001386 820 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALN 895 (1088)
Q Consensus 820 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~-~lasg~~d---g~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~ 895 (1088)
.|.+-|..... .+.+.... ......||| |++ .++..+.+ ..|+++|+.+++...... ..+......|||||+
T Consensus 170 ~l~~~d~dg~~-~~~~~~~~-~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKGG-LNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred eEEEECCCCCc-eeEEccCC-CeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 35555554333 33333333 778899999 676 36654433 479999999886543333 445566788999998
Q ss_pred EEEEE-eCC--CcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCC----eEEEEEcCcceeeee
Q 001386 896 ILVSS-GGD--AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----HLAIYEAEELTCLKQ 968 (1088)
Q Consensus 896 ~las~-s~D--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~----~i~vwd~~~~~~~~~ 968 (1088)
.|+.. +.+ ..|.++|+.+++.. .+....+. .....|+|||+.|+..++. .|++.|+.+++..+.
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~---~LT~~~~~------d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLT---QITNYPGI------DVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEE---EcccCCCc------cCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 77644 333 46777888776522 22222221 2345799999999885443 699999988877544
Q ss_pred eecCCCcCEEEEEEeeCCCEEEEEeCC---------CcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCC
Q 001386 969 WFPISSVPISQATFSCDCRMVFTSFVD---------GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1039 (1088)
Q Consensus 969 ~~~~h~~~v~~l~fs~dg~~l~s~s~d---------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~ 1039 (1088)
...+. ....|||||++|+..+.. ..|.+.|+.++... .+... . . ....+|+| ||
T Consensus 317 t~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-----~---~---~~~p~~SP-DG 379 (419)
T PRK04043 317 VFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-----G---V---NQFPRFSS-DG 379 (419)
T ss_pred ccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-----C---C---cCCeEECC-CC
Confidence 33222 124899999998877654 26788899888753 22211 0 0 11267999 78
Q ss_pred CEEEEEeCC-CcEEEEeCCCCC
Q 001386 1040 TQFAVGLTN-GEVYVIEPNEPG 1060 (1088)
Q Consensus 1040 ~~l~~~~~d-g~v~~w~l~~~~ 1060 (1088)
..++....+ +.-.++-+...+
T Consensus 380 ~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 380 GSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CEEEEEEccCCcEEEEEEecCC
Confidence 877666544 343444444333
No 291
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.91 E-value=2e-06 Score=96.99 Aligned_cols=218 Identities=10% Similarity=0.058 Sum_probs=127.4
Q ss_pred CCEEEEEeCCcEEEEEcCCceeEEEecCCCCCe-----EEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccC-
Q 001386 810 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTA-----TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK- 883 (1088)
Q Consensus 810 g~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i-----~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~- 883 (1088)
+..++...++.+..+|.++|+.+.......... .+.... ++ .++.++.+|.+..+|..+|+.+........
T Consensus 161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~ 237 (394)
T PRK11138 161 GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPT 237 (394)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCC
Confidence 333333346777777887777776665321110 111222 23 466678899999999999987655431100
Q ss_pred ------CeeEEEECC--CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeE
Q 001386 884 ------RVTGLVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHL 955 (1088)
Q Consensus 884 ------~V~~l~~s~--dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i 955 (1088)
....+.-+| .+..++.++.+|.+...|..+++..-.. ..+. ...+.. .+++.++.+.++.+
T Consensus 238 ~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~----~~~~------~~~~~~-~~~~vy~~~~~g~l 306 (394)
T PRK11138 238 GATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR----EYGS------VNDFAV-DGGRIYLVDQNDRV 306 (394)
T ss_pred CccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee----cCCC------ccCcEE-ECCEEEEEcCCCeE
Confidence 011111222 3456777788999999999987633211 1111 111222 24455555788999
Q ss_pred EEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccc-eEEEE
Q 001386 956 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP-HAIAA 1034 (1088)
Q Consensus 956 ~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 1034 (1088)
..+|..+|+.+............+... .+.+|+.++.||.+.+.|..+|+.+.+..... . .+.. ..+
T Consensus 307 ~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~---~-----~~~s~P~~-- 374 (394)
T PRK11138 307 YALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDS---S-----GFLSEPVV-- 374 (394)
T ss_pred EEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC---C-----cceeCCEE--
Confidence 999999998765422111111222222 24567788999999999999999988765311 0 0111 112
Q ss_pred CCCCCCEEEEEeCCCcEEEEeC
Q 001386 1035 HPLKPTQFAVGLTNGEVYVIEP 1056 (1088)
Q Consensus 1035 ~p~d~~~l~~~~~dg~v~~w~l 1056 (1088)
. +..|++++.||.|+.+++
T Consensus 375 ~---~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 375 A---DDKLLIQARDGTVYAITR 393 (394)
T ss_pred E---CCEEEEEeCCceEEEEeC
Confidence 1 357888999999999876
No 292
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.86 E-value=1.1e-08 Score=121.77 Aligned_cols=201 Identities=15% Similarity=0.256 Sum_probs=160.0
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
...|-..|.++.=+|...+.++|+.||.|++|....+..+....+. |. ..|+.+.|+.+|. .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 3345678889999998999999999999999999998877655443 33 8899999999999 677888899999998
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEe---cCCeEEEEECCCCC-ceEEecCCCCceEEEEEccCCCEEEEE
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~ 547 (1088)
+. .+.....+.|......+.|.. ..+++++ .++.+.+||.-... .-.....|.+.++++++.|..+.+++|
T Consensus 2280 ~~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred cC-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEec
Confidence 65 666667788888888887754 2455553 46789999865433 233447888899999999999999999
Q ss_pred eeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeC
Q 001386 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1088)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1088)
+. +|.|++||++..++.+.++. +. ...++++|+..|.++||++.....+..+..
T Consensus 2355 gr----~G~v~l~D~rqrql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2355 GR----KGEVCLFDIRQRQLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred CC----cCcEEEeehHHHHHHHHhhh------------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 87 44499999998887766553 33 467899999999999999998888877764
No 293
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.84 E-value=2.3e-06 Score=84.31 Aligned_cols=216 Identities=16% Similarity=0.139 Sum_probs=135.8
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEcCCc--eeeee---eccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 001386 845 LAFNPHDNNVIAIGMDDSTILIYNARSS--EVISK---LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 919 (1088)
Q Consensus 845 l~~sp~d~~~lasg~~dg~i~lwd~~~~--~~~~~---l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~ 919 (1088)
++.++ +|++||+- .|..|.|=..++. ..+.+ .+...-.-+.++||||+.+||.+...|+|+++|+...+....
T Consensus 3 ~~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 3 LALSS-DGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred eeecC-CCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence 56666 88888865 5777877665542 22222 233334567899999999999999999999999997543322
Q ss_pred eeeecCCCCccCCCCeEEEEEcCCC-------CEEEEEeCCeEEEEEcCcce-------eeeeeecCCCcCEEEEEEeeC
Q 001386 920 RSLQTPDGVMTLAPSETHIQFHKDQ-------TRFLLVHETHLAIYEAEELT-------CLKQWFPISSVPISQATFSCD 985 (1088)
Q Consensus 920 ~~~~~~~~~~~~~~~v~~~~fs~dg-------~~l~~~~d~~i~vwd~~~~~-------~~~~~~~~h~~~v~~l~fs~d 985 (1088)
.......+ .....|..+.|-+-- .+|++..+|.++-|-+..+. ....+...+...|.++.+.|.
T Consensus 81 ~p~~~~~~--d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 81 PPAMSFPG--DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred CcccccCC--ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 22111111 112457777775532 45666888887777654321 112233334789999999999
Q ss_pred CCEEEEEeCC-----------CcEEEEEcCCCceEEEeccccccCCC-----------C--------ccccccceEEEEC
Q 001386 986 CRMVFTSFVD-----------GTLSIHEASNLEVQCRILSTAYLRPT-----------T--------SCLHVYPHAIAAH 1035 (1088)
Q Consensus 986 g~~l~s~s~d-----------g~v~vwd~~~~~~~~~~~~~~~~~~~-----------~--------~~~~~~~~~~~~~ 1035 (1088)
-+.|++|+.. .-+..|.+-++..-+.........-. . .........|+.+
T Consensus 159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlS 238 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLS 238 (282)
T ss_pred CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEEC
Confidence 8888777632 14677887776554332211000000 0 0111223557789
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCC--CCCCccc
Q 001386 1036 PLKPTQFAVGLTNGEVYVIEPNE--PGDTWAV 1065 (1088)
Q Consensus 1036 p~d~~~l~~~~~dg~v~~w~l~~--~~~~~~~ 1065 (1088)
| ||..||+...+|.|.+|+++. ...+|..
T Consensus 239 P-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 239 P-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred C-CCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 9 899999999999999999976 4456653
No 294
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.82 E-value=7.9e-06 Score=83.50 Aligned_cols=205 Identities=15% Similarity=0.132 Sum_probs=140.4
Q ss_pred eEEEEec-CCCEEEEEe--CCcEEEEEcCCceeEEEecCCCCCe--EEEEEcCCCCcEEEEEe-----CCCeEEEEEcC-
Q 001386 802 PCFALSK-NDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTA--TSLAFNPHDNNVIAIGM-----DDSTILIYNAR- 870 (1088)
Q Consensus 802 ~~~~~s~-dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i--~~l~~sp~d~~~lasg~-----~dg~i~lwd~~- 870 (1088)
-.++.+| ++..++.+. .....+||..+++....+....+.- -.-+||+ ||++|++.- ..|.|-|||..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECcC
Confidence 3578888 566666676 3458999999999988877655433 3578999 888888753 35799999999
Q ss_pred CceeeeeeccccCCeeEEEECCCCCEEEEEeC-------CC-----------cEEEEEcCCCceeeeeeeecCCCCccCC
Q 001386 871 SSEVISKLEGHSKRVTGLVFSDALNILVSSGG-------DA-----------QIFVWDVDGWGIQTCRSLQTPDGVMTLA 932 (1088)
Q Consensus 871 ~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~-------Dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 932 (1088)
+.+.+.++..|.-.-..+.+.|||+.|+.+-. .| .+..-|..+|+......+.. .-+.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~-~~~~--- 162 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP-DLHQ--- 162 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc-cccc---
Confidence 67888899888777778999999988877521 11 24444555555333222211 1122
Q ss_pred CCeEEEEEcCCCCEEEEEe-CC-------eEEEEEcCcceeeeeeec------CCCcCEEEEEEeeCCCEEEEEe-CCCc
Q 001386 933 PSETHIQFHKDQTRFLLVH-ET-------HLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVFTSF-VDGT 997 (1088)
Q Consensus 933 ~~v~~~~fs~dg~~l~~~~-d~-------~i~vwd~~~~~~~~~~~~------~h~~~v~~l~fs~dg~~l~s~s-~dg~ 997 (1088)
.+|.++++.++|..++... .+ -|.+++-.. .+..+.. .-...+-+|+++.+|.++++.| .-+.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 2699999999999887741 11 244444332 2222111 1157899999999999876555 6789
Q ss_pred EEEEEcCCCceEEEec
Q 001386 998 LSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 998 v~vwd~~~~~~~~~~~ 1013 (1088)
+.+||..+|.++....
T Consensus 241 ~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 241 VAVWDAATGRLLGSVP 256 (305)
T ss_pred EEEEECCCCCEeeccc
Confidence 9999999999987665
No 295
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.82 E-value=5e-08 Score=99.58 Aligned_cols=164 Identities=20% Similarity=0.157 Sum_probs=114.2
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE-
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA- 414 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~- 414 (1088)
.++.+.++|+|+ ++|++..+....+.++..... ..+.++. ..-...-+++.|..+......+
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~------------~~v~~~~~ai~~~~~~~sv~v~d 126 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDV------------SCVPKRPTAISFIREDTSVLVAD 126 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeE------------eecccCcceeeeeeccceEEEEe
Confidence 456667788887 788888888877777655433 0111111 0011223344454455555444
Q ss_pred --eCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe-ccCCccEEEE
Q 001386 415 --YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSL 491 (1088)
Q Consensus 415 --~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~ 491 (1088)
+....+.+|....+.+. .+-||-..++.++|+||++ +++++..|..|+|-....--.+..| -||..-|..+
T Consensus 127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 44455666766654433 3569999999999999999 8999999999999877766666555 5799999999
Q ss_pred eeeeeCCceEEEEEecCCeEEEEECCCCCceEEe
Q 001386 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1088)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 525 (1088)
++. ++..|++++.|++|++||+.+++....+
T Consensus 201 sl~---~~~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 201 SLT---DNYLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred eec---cCceeeecCCCCcEEEEecccCCccccc
Confidence 874 3357999999999999999988876544
No 296
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.80 E-value=5.9e-06 Score=84.42 Aligned_cols=233 Identities=16% Similarity=0.163 Sum_probs=153.6
Q ss_pred ceeeeecCCCCeEEEEEcccCc-EEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 001386 337 PMSMDFHPVQHTLLLVGTNVGD-TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1088)
Q Consensus 337 V~~v~~spdg~~lla~g~~dg~-i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~ 415 (1088)
...++.+|+....++.+-.-|+ ..+||..+|+...... .-....|.|| -+||+||++|.+.-
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-----------a~~gRHFyGH------g~fs~dG~~LytTE 69 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-----------APPGRHFYGH------GVFSPDGRLLYTTE 69 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-----------CCCCCEEecC------EEEcCCCCEEEEec
Confidence 3457889966667888877664 7899999998775421 0111225555 48999999999873
Q ss_pred -----CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEe----------------CCCcEEEEeCCC
Q 001386 416 -----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG----------------DDKTIKVWDAVT 474 (1088)
Q Consensus 416 -----~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s----------------~d~~i~vwd~~~ 474 (1088)
..|.|-|||...+ ++.+.++..|.-.-..+.+.|||+.|+++-|+ .+-++...|..+
T Consensus 70 nd~~~g~G~IgVyd~~~~--~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s 147 (305)
T PF07433_consen 70 NDYETGRGVIGVYDAARG--YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS 147 (305)
T ss_pred cccCCCcEEEEEEECcCC--cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC
Confidence 4578999999932 45555777787777889999999854444443 133456677888
Q ss_pred CceeEE--e--ccCCccEEEEeeeeeCCceEEEEEecCCe-------EEEEECCCCCceEEec-------CCCCceEEEE
Q 001386 475 GSRTYS--F--EGHGAPVYSLCPHAKENIHFIFSISVDGK-------IKAWLYDSLGARVDYD-------APGLGCTRMA 536 (1088)
Q Consensus 475 ~~~~~~--~--~~~~~~v~~~~~~~~~~~~~l~s~~~dg~-------i~iwd~~~~~~~~~~~-------~~~~~v~~~~ 536 (1088)
|+.+.. + ..|...|..+++. .+|..++..-..|. |-+++.. +....+. .-.+-+-+++
T Consensus 148 G~ll~q~~Lp~~~~~lSiRHLa~~--~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa 223 (305)
T PF07433_consen 148 GALLEQVELPPDLHQLSIRHLAVD--GDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIA 223 (305)
T ss_pred CceeeeeecCccccccceeeEEec--CCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEE
Confidence 888765 4 3477788888884 45544444433332 3333322 2222221 1234688999
Q ss_pred EccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcE
Q 001386 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI 602 (1088)
Q Consensus 537 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i 602 (1088)
+++++..+++.+. ..+.+.+||..+++.+....-.. +..++-.+++ ++..+..|.+
T Consensus 224 ~~~~g~~ia~tsP---rGg~~~~~d~~tg~~~~~~~l~D-----~cGva~~~~~--f~~ssG~G~~ 279 (305)
T PF07433_consen 224 ADRDGRLIAVTSP---RGGRVAVWDAATGRLLGSVPLPD-----ACGVAPTDDG--FLVSSGQGQL 279 (305)
T ss_pred EeCCCCEEEEECC---CCCEEEEEECCCCCEeeccccCc-----eeeeeecCCc--eEEeCCCccE
Confidence 9999999988763 35679999999999987776533 6667766665 4444444543
No 297
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.77 E-value=2e-06 Score=89.85 Aligned_cols=223 Identities=13% Similarity=0.123 Sum_probs=139.8
Q ss_pred CCcEEEEEcCCceeEEEecCC--CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCC
Q 001386 818 GGVISLYIVMTFKTILTIMPP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 895 (1088)
Q Consensus 818 dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~ 895 (1088)
+|+|..||..+|+.+...... .....+..+. ++..+++++.++.++.||..+|+.+..+.. .+++.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE--ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 578999999999998887531 1222222332 345677778999999999999999877764 22222211 22455
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCCeEEEEEcCcceeeeeeecCCC
Q 001386 896 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISS 974 (1088)
Q Consensus 896 ~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~ 974 (1088)
.++.++.|+.++.+|..+|+..-.......+... .........++..++++ .++.|..+|..+|+.+........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG----VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS----TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccc----cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 6676778889999999988754321111111110 12223333337766665 589999999999999877644221
Q ss_pred c---------CEEEEEEeeCCCEEEEEeCCCc-EEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEE
Q 001386 975 V---------PISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV 1044 (1088)
Q Consensus 975 ~---------~v~~l~fs~dg~~l~s~s~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~ 1044 (1088)
. .+..-....++ .++.++.++. +.+ |+.+|+.+.+.. ... ... ...+ ++..|++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-----~~~-----~~~---~~~~-~~~~l~~ 217 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-----ISG-----IYS---LPSV-DGGTLYV 217 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-----SS------ECE---CEEC-CCTEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-----CCC-----ccC---Ccee-eCCEEEE
Confidence 1 11222223345 7777777885 555 999999664222 111 111 1233 4677888
Q ss_pred EeCCCcEEEEeCCCCCCCcc
Q 001386 1045 GLTNGEVYVIEPNEPGDTWA 1064 (1088)
Q Consensus 1045 ~~~dg~v~~w~l~~~~~~~~ 1064 (1088)
++.+|.|..||+...+..|.
T Consensus 218 ~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 218 TSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EETTTEEEEEETTTTEEEEE
T ss_pred EeCCCEEEEEECCCCCEEeE
Confidence 88999999999999988885
No 298
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.76 E-value=8.2e-08 Score=98.08 Aligned_cols=159 Identities=9% Similarity=0.091 Sum_probs=113.9
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEcCCce----eeeeeccccCCeeEEEECCCCCEEEE---EeCCCcEEEEEcCCCc
Q 001386 843 TSLAFNPHDNNVIAIGMDDSTILIYNARSSE----VISKLEGHSKRVTGLVFSDALNILVS---SGGDAQIFVWDVDGWG 915 (1088)
Q Consensus 843 ~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~----~~~~l~~h~~~V~~l~~s~dg~~las---~s~Dg~i~iwd~~~~~ 915 (1088)
..+..++ ++++||++..+....++++.... ++...... ..-+++.|-.+...... +++...+.+|....+.
T Consensus 66 ~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~-~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 66 ALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP-KRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeecc-cCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 3445666 78899998888887777775433 22222222 22344444444444333 3455566666665422
Q ss_pred eeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeC
Q 001386 916 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFV 994 (1088)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~ 994 (1088)
....-||.. .++.++||||+++|+++ .|..|+|-....--.+..+.-||..-|..++.-++ ..|+++|.
T Consensus 144 ------~~~~lGhvS---ml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sG 213 (390)
T KOG3914|consen 144 ------CEPILGHVS---MLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSG 213 (390)
T ss_pred ------cchhhhhhh---hhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCC
Confidence 222345554 68999999999999996 78999999999888888888999999999998764 56999999
Q ss_pred CCcEEEEEcCCCceEEEec
Q 001386 995 DGTLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 995 dg~v~vwd~~~~~~~~~~~ 1013 (1088)
|++|++||+.+|+++..+.
T Consensus 214 D~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 214 DKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred CCcEEEEecccCCcccccc
Confidence 9999999999999986655
No 299
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.75 E-value=1.6e-05 Score=83.15 Aligned_cols=221 Identities=14% Similarity=0.155 Sum_probs=142.7
Q ss_pred EEEEec-CCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEe-cCCCEEEEE
Q 001386 739 RLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAYLFSA 816 (1088)
Q Consensus 739 ~~~~s~-~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~dg~~l~~~ 816 (1088)
+++|.+ ++..+++-...+.|..|+...... ..... .....+++. +++ .++++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~-------------------~~~~~------~~~~G~~~~~~~g-~l~v~ 57 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV-------------------EVIDL------PGPNGMAFDRPDG-RLYVA 57 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE-------------------EEEES------SSEEEEEEECTTS-EEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE-------------------EEEec------CCCceEEEEccCC-EEEEE
Confidence 567887 566566655678787777543321 11111 126778888 565 55555
Q ss_pred eCCcEEEEEcCCceeEEEecC-----CCCCeEEEEEcCCCCcEEEEEeCC--------CeEEEEEcCCceeeeeeccccC
Q 001386 817 SGGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNVIAIGMDD--------STILIYNARSSEVISKLEGHSK 883 (1088)
Q Consensus 817 ~dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~sp~d~~~lasg~~d--------g~i~lwd~~~~~~~~~l~~h~~ 883 (1088)
..+.+.++|..+++....... .......+++.| +|++.++.... |.|+.++.. ++...... .-.
T Consensus 58 ~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~ 134 (246)
T PF08450_consen 58 DSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLG 134 (246)
T ss_dssp ETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EES
T ss_pred EcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEec-Ccc
Confidence 656667779998865444332 335678999999 78877776544 568888877 55433333 345
Q ss_pred CeeEEEECCCCCEEE-EEeCCCcEEEEEcCCCc--eeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCCeEEEEE
Q 001386 884 RVTGLVFSDALNILV-SSGGDAQIFVWDVDGWG--IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYE 959 (1088)
Q Consensus 884 ~V~~l~~s~dg~~la-s~s~Dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~vwd 959 (1088)
..+.|+|+||++.|. +-+..+.|..++++... ......+....... +..-.+++..+|++.++. ..+.|.+++
T Consensus 135 ~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---g~pDG~~vD~~G~l~va~~~~~~I~~~~ 211 (246)
T PF08450_consen 135 FPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP---GYPDGLAVDSDGNLWVADWGGGRIVVFD 211 (246)
T ss_dssp SEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS---CEEEEEEEBTTS-EEEEEETTTEEEEEE
T ss_pred cccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC---cCCCcceEcCCCCEEEEEcCCCEEEEEC
Confidence 578999999999776 55677888899986432 22223332222221 136789999999988884 678999999
Q ss_pred cCcceeeeeeecCCCcCEEEEEEe-eCCCEEEEEe
Q 001386 960 AEELTCLKQWFPISSVPISQATFS-CDCRMVFTSF 993 (1088)
Q Consensus 960 ~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~s~s 993 (1088)
.. |+.+..+... ...+++++|. +|.+.|+..+
T Consensus 212 p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 212 PD-GKLLREIELP-VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp TT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEEEE
T ss_pred CC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEEEe
Confidence 88 8888776655 4589999995 6767766544
No 300
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.74 E-value=7.8e-09 Score=114.40 Aligned_cols=216 Identities=15% Similarity=0.228 Sum_probs=157.1
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCC-cEEEE
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK-TIKVW 470 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~-~i~vw 470 (1088)
+..|....+|++||-+.+.|++|+..|.|+++++.+|.... ...+|..+|+.+.=+.||.. .|.+++... -..+|
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~-~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST-QLTSSSSSSPLSALW 1172 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce-eeeeccccCchHHHh
Confidence 77799999999999999999999999999999999997665 57799999999999999995 333333333 56789
Q ss_pred eCC-CCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCC----CCceEEEEEccCCCEEE
Q 001386 471 DAV-TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP----GLGCTRMAYSANGRRLF 545 (1088)
Q Consensus 471 d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~s~~g~~l~ 545 (1088)
++. ++...++|.+- .++.|+.. ...-+.|+.-....+||+++.....++... ...-.+..|+|+.++++
T Consensus 1173 ~~~s~~~~~Hsf~ed----~~vkFsn~--~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDED----KAVKFSNS--LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred ccccccCcccccccc----ceeehhhh--HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 976 45666666532 34455322 233445555567889999988765542221 11236788999998887
Q ss_pred EEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCC
Q 001386 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1088)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1088)
-- =.+||++..+.++.|.... ..+ .-.|+|.|..++.-++ |||+++.+++...+.-. -
T Consensus 1247 nd---------GvLWDvR~~~aIh~FD~ft---~~~-~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld----q 1304 (1516)
T KOG1832|consen 1247 ND---------GVLWDVRIPEAIHRFDQFT---DYG-GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD----Q 1304 (1516)
T ss_pred eC---------ceeeeeccHHHHhhhhhhe---ecc-cccccCCCceEEeech-----hhhhHHHHHHhcCcccc----c
Confidence 53 2589999888887776554 222 2359999999998765 99999999888776433 2
Q ss_pred ceEEEecCCCEEEE
Q 001386 626 PRICFNKNGTLLAV 639 (1088)
Q Consensus 626 ~~v~~s~~~~~l~~ 639 (1088)
..+.|+..|..+..
T Consensus 1305 c~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1305 CAVTFNSTGDVMYA 1318 (1516)
T ss_pred eEEEeccCccchhh
Confidence 56888888866543
No 301
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.72 E-value=3.4e-05 Score=80.68 Aligned_cols=216 Identities=13% Similarity=0.136 Sum_probs=137.6
Q ss_pred eEEEEec-CCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEc-CCCCcEEEEEeCCCeEEEEEcCCceeeeee
Q 001386 802 PCFALSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFN-PHDNNVIAIGMDDSTILIYNARSSEVISKL 878 (1088)
Q Consensus 802 ~~~~~s~-dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-p~d~~~lasg~~dg~i~lwd~~~~~~~~~l 878 (1088)
.+++|.+ ++.++++.. .+.|..|+..+++... +.... ...+++. + ++.+++ +... .+.++|..+++.....
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~-~g~l~v-~~~~-~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRP-DGRLYV-ADSG-GIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECT-TSEEEE-EETT-CEEEEETTTTEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEcc-CCEEEE-EEcC-ceEEEecCCCcEEEEe
Confidence 3678888 555555554 7889999998876543 22222 7778888 5 665555 4444 4566699988654333
Q ss_pred cc-----ccCCeeEEEECCCCCEEEEEeCC--------CcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCC
Q 001386 879 EG-----HSKRVTGLVFSDALNILVSSGGD--------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 945 (1088)
Q Consensus 879 ~~-----h~~~V~~l~~s~dg~~las~s~D--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~ 945 (1088)
.. .....+.+++.|+|++.++.... |.|..++.. ++.. ....... ....++|+||++
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~--~~~~~~~-------~pNGi~~s~dg~ 146 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT--VVADGLG-------FPNGIAFSPDGK 146 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEE--EEEEEES-------SEEEEEEETTSS
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEE--EEecCcc-------cccceEECCcch
Confidence 22 34568899999999988877654 446666665 3311 1222211 357899999999
Q ss_pred EEEEE--eCCeEEEEEcCccee----eeeeecCC--CcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccc
Q 001386 946 RFLLV--HETHLAIYEAEELTC----LKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY 1017 (1088)
Q Consensus 946 ~l~~~--~d~~i~vwd~~~~~~----~~~~~~~h--~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 1017 (1088)
.|.++ ..+.|..+++..... ...+.... .+....+++..+|...++....+.|.+++-. |+++..+....
T Consensus 147 ~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~- 224 (246)
T PF08450_consen 147 TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV- 224 (246)
T ss_dssp EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS-
T ss_pred heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC-
Confidence 88764 567888888863221 12222112 2347889999999988888889999999987 99888776221
Q ss_pred cCCCCccccccceEEEEC-CCCCCEEEEE
Q 001386 1018 LRPTTSCLHVYPHAIAAH-PLKPTQFAVG 1045 (1088)
Q Consensus 1018 ~~~~~~~~~~~~~~~~~~-p~d~~~l~~~ 1045 (1088)
-.+.+++|. | +.+.|++.
T Consensus 225 ---------~~~t~~~fgg~-~~~~L~vT 243 (246)
T PF08450_consen 225 ---------PRPTNCAFGGP-DGKTLYVT 243 (246)
T ss_dssp ---------SSEEEEEEEST-TSSEEEEE
T ss_pred ---------CCEEEEEEECC-CCCEEEEE
Confidence 146778994 5 54555444
No 302
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=7e-07 Score=92.19 Aligned_cols=299 Identities=13% Similarity=0.131 Sum_probs=193.3
Q ss_pred ccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCE
Q 001386 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 812 (1088)
Q Consensus 733 ~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 812 (1088)
|...|+.+..+ ..+++++++-||.++.|.-..- +|..+.. ....|...+.+++.+.+|.+
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~i----------------sGvEfVK---hFraHL~~I~sl~~S~dg~L 67 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRI----------------SGVEFVK---HFRAHLGVILSLAVSYDGWL 67 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCc----------------cceeehh---hhHHHHHHHHhhhcccccee
Confidence 56666665544 4567899999999999963210 1111111 11136778889999999999
Q ss_pred EEEEe--CCcEEEEEcCCceeEEEecCCC-CCeEEEEEcCCCC--cEEEEEeCCCeEEEEEcCCce-eeeee-ccccCCe
Q 001386 813 LFSAS--GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDN--NVIAIGMDDSTILIYNARSSE-VISKL-EGHSKRV 885 (1088)
Q Consensus 813 l~~~~--dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~--~~lasg~~dg~i~lwd~~~~~-~~~~l-~~h~~~V 885 (1088)
+.+.. |..++++|+++...+..++... ....++..++.|. .+.++...+|.+.|+|-.... ....+ .-|..+|
T Consensus 68 ~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV 147 (558)
T KOG0882|consen 68 FRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPV 147 (558)
T ss_pred EeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCce
Confidence 99865 6889999998876664443222 1222333444111 233344567899999976543 33333 4499999
Q ss_pred eEEEECCCCCEEEEEeCCCcEEEEEcCCCc-eeeeee---eec---CCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEE
Q 001386 886 TGLVFSDALNILVSSGGDAQIFVWDVDGWG-IQTCRS---LQT---PDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAI 957 (1088)
Q Consensus 886 ~~l~~s~dg~~las~s~Dg~i~iwd~~~~~-~~~~~~---~~~---~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~v 957 (1088)
.++.+++-+..++|....|.|.-|.....- ...... ++. +-+.........++.|+|+|..+.+ +.|.+|++
T Consensus 148 ~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~ 227 (558)
T KOG0882|consen 148 KKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRG 227 (558)
T ss_pred EEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEE
Confidence 999999999999999999999999988410 000000 000 0011111135789999999999999 78899999
Q ss_pred EEcCcceeeeeeecC-------------------------------C-CcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCC
Q 001386 958 YEAEELTCLKQWFPI-------------------------------S-SVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1005 (1088)
Q Consensus 958 wd~~~~~~~~~~~~~-------------------------------h-~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~ 1005 (1088)
++..+|+.++.+-.. | ...-+.++|...|.+|+.|+-=| |+|.++.+
T Consensus 228 F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~t 306 (558)
T KOG0882|consen 228 FVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDT 306 (558)
T ss_pred EEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeec
Confidence 999999877653111 2 23445678888999999887665 89999999
Q ss_pred CceEEEecccccc----------------CCCCccccccceEEEECCCCCCEEEEEeCCCcEEEE
Q 001386 1006 LEVQCRILSTAYL----------------RPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1054 (1088)
Q Consensus 1006 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w 1054 (1088)
+.+.+.+...... +.........+ .+.+.+ |+.+++++-.-..++++
T Consensus 307 n~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np-~~~~~~-dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 307 NTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNP-LLEFQK-DPTIVCTAFKKNRFYLF 369 (558)
T ss_pred CeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCc-ccccCC-CCeEEEeeeecceEEEE
Confidence 9887654311100 00000000111 234677 78999999999999998
No 303
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.70 E-value=1.9e-05 Score=88.95 Aligned_cols=309 Identities=10% Similarity=0.089 Sum_probs=170.5
Q ss_pred EEEEEecCCeEEEEECCCCCceEEecCCCC-ce-E-----EEE--EccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEE
Q 001386 501 FIFSISVDGKIKAWLYDSLGARVDYDAPGL-GC-T-----RMA--YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1088)
Q Consensus 501 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v-~-----~~~--~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1088)
.++.++.+|.+.-+|.++++.......... .. . .+. ..-++..++.++. ++.++.+|..+|+.+-..
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~----~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE----KGQVYALNAEDGEVAWQT 146 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC----CCEEEEEECCCCCCcccc
Confidence 566667777777788777776665443321 00 0 000 0113445555543 556999999999987766
Q ss_pred eccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCC---CceEEEecCCCEEEEEeCCCcEEE
Q 001386 572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE---NPRICFNKNGTLLAVIANENRIKI 648 (1088)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~v~~s~~~~~l~~~~~dg~i~i 648 (1088)
.... ........ .+..++.++.++.+.-+|..+|+.+........... ..+-.. .+..++.++.+|.+..
T Consensus 147 ~~~~---~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a 219 (394)
T PRK11138 147 KVAG---EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSA 219 (394)
T ss_pred cCCC---ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEE
Confidence 5432 11111112 245677788899999999999999988765321100 011111 1335677778889988
Q ss_pred EeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeec
Q 001386 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 728 (1088)
Q Consensus 649 wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~ 728 (1088)
+|..+++......... +.+.. ..-++++.
T Consensus 220 ~d~~~G~~~W~~~~~~-------------------------------~~~~~-------~~~~~~~~------------- 248 (394)
T PRK11138 220 VLMEQGQLIWQQRISQ-------------------------------PTGAT-------EIDRLVDV------------- 248 (394)
T ss_pred EEccCChhhheecccc-------------------------------CCCcc-------chhccccc-------------
Confidence 8888776543221100 00000 00000000
Q ss_pred CCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEec
Q 001386 729 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 808 (1088)
Q Consensus 729 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 808 (1088)
...+ .+ .+..++.++.+|.+..+|...++. +|....+. ...+.. .
T Consensus 249 ----~~sP----~v--~~~~vy~~~~~g~l~ald~~tG~~---------~W~~~~~~---------------~~~~~~-~ 293 (394)
T PRK11138 249 ----DTTP----VV--VGGVVYALAYNGNLVALDLRSGQI---------VWKREYGS---------------VNDFAV-D 293 (394)
T ss_pred ----CCCc----EE--ECCEEEEEEcCCeEEEEECCCCCE---------EEeecCCC---------------ccCcEE-E
Confidence 0000 11 133455566677777776544432 33322111 011122 2
Q ss_pred CCCEEEEEeCCcEEEEEcCCceeEEEecCCC-CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeE
Q 001386 809 NDAYLFSASGGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 887 (1088)
Q Consensus 809 dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~ 887 (1088)
++..++...+|.+..+|..+|+.+....... ....+.++. + ..|+.++.||.+++.|..+|+.+...+-....+.+
T Consensus 294 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~-g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s 370 (394)
T PRK11138 294 GGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--N-GYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLS 370 (394)
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--C-CEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccee
Confidence 3444444458999999999998766543211 122333332 3 46778899999999999999988777543333332
Q ss_pred -EEECCCCCEEEEEeCCCcEEEEEc
Q 001386 888 -LVFSDALNILVSSGGDAQIFVWDV 911 (1088)
Q Consensus 888 -l~~s~dg~~las~s~Dg~i~iwd~ 911 (1088)
..+ .+..|+.++.||.|..++.
T Consensus 371 ~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 371 EPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEE--ECCEEEEEeCCceEEEEeC
Confidence 222 2457888899998887764
No 304
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.68 E-value=1.4e-07 Score=102.89 Aligned_cols=296 Identities=13% Similarity=0.149 Sum_probs=187.5
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCC--CEEEEEecCCCCcE-EEEEEeCCCcEEEEe
Q 001386 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG--NVNDLAFSAPCKQI-SVITCGDDKTIKVWD 471 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~--~v~~~~~s~d~~~l-~l~s~s~d~~i~vwd 471 (1088)
-.+++.++..+|.|+-+|.++.-| +.+-|+...- .+.. +-.|.. .|-.+.|+|....- .+++.+ ...-.+|+
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~--~ppr-~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwn 97 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPF--TPPR-WLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWN 97 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCC--CCce-eeeccCcchhcceecccCCCCceeEEecC-cchhhhhh
Confidence 457788999999999999999888 6666776432 2211 222332 46677888765432 445444 44556899
Q ss_pred CCCC---ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceE-EecCCCCceEEEEEccC-CCEEEE
Q 001386 472 AVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSAN-GRRLFS 546 (1088)
Q Consensus 472 ~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~-g~~l~~ 546 (1088)
+... ..-..+.+|...|+.+.|++.. ...+++++.|-.+..||+++..... ....-......+.|+.. +..+++
T Consensus 98 lA~ss~~aIef~lhghsraitd~n~~~q~-pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas 176 (1081)
T KOG0309|consen 98 LAKSSSNAIEFVLHGHSRAITDINFNPQH-PDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS 176 (1081)
T ss_pred hhcCCccceEEEEecCccceeccccCCCC-CcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh
Confidence 7643 3346678999999999998753 3589999999999999999876544 33333445566788764 445554
Q ss_pred EeeCCCCceeEEEEeCCCC-ceeEEEeccccccccEEEEEEeCC-CCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCC
Q 001386 547 CGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 624 (1088)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 624 (1088)
.. ...|.+||.+.| ..+..+++|. ..++.+.|..- ...+.+.+.||+|+.||............... ..
T Consensus 177 sh-----g~~i~vwd~r~gs~pl~s~K~~v---s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~-~p 247 (1081)
T KOG0309|consen 177 SH-----GNDIFVWDLRKGSTPLCSLKGHV---SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTN-FP 247 (1081)
T ss_pred cc-----CCceEEEeccCCCcceEEecccc---eeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecccc-Cc
Confidence 33 234999999865 5677788876 78888888653 35678899999999999875432222211111 23
Q ss_pred CceEEEecCC--CEEEEEeCCCcEEEE---------eCCC-CCcccccccccCcceeeeecCCCcceeccccCCceeecC
Q 001386 625 NPRICFNKNG--TLLAVIANENRIKIL---------ETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 692 (1088)
Q Consensus 625 v~~v~~s~~~--~~l~~~~~dg~i~iw---------d~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~ 692 (1088)
|..-.+-|-| .++.-.-.+..+.++ +..+ .+.+..+.+|.+.|....|-..+.. .+
T Consensus 248 iw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~------------~~ 315 (1081)
T KOG0309|consen 248 IWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKEC------------DG 315 (1081)
T ss_pred ceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccc------------cC
Confidence 4555555532 222222122233333 3332 2567778888888766655432211 11
Q ss_pred CCCCCCCcccccccCccceeccccc
Q 001386 693 DPKEDVKPEISVEAENKSEVEKPLF 717 (1088)
Q Consensus 693 ~~~~~~~~l~~~~~d~~i~vw~~~~ 717 (1088)
+.....-.+++-+.|.++++|.+..
T Consensus 316 d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 316 DYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CCCccceeEEEeecCCceEeeeccH
Confidence 1122234578999999999998653
No 305
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.68 E-value=3.2e-06 Score=81.50 Aligned_cols=148 Identities=11% Similarity=-0.040 Sum_probs=106.0
Q ss_pred eEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001386 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1088)
Q Consensus 399 V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~ 478 (1088)
+.++++|+|++++++.+....|..|.+...............+..=.+..|+.... .++++..||++.|||++.....
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccc
Confidence 78899999999999999999999999986543322223344555567889998887 7999999999999999865433
Q ss_pred E-----EeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCC--------ceEEEEEccCCCEEE
Q 001386 479 Y-----SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--------GCTRMAYSANGRRLF 545 (1088)
Q Consensus 479 ~-----~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------~v~~~~~s~~g~~l~ 545 (1088)
. +-..|.+.+..+.|++.+--.+|+..-.-+.+.+.|+++......+..... .+....|+.++..+.
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~ 318 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESND 318 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccc
Confidence 2 224588999999998654445677766778899999998775443322221 255556666665555
Q ss_pred EEe
Q 001386 546 SCG 548 (1088)
Q Consensus 546 ~~~ 548 (1088)
+..
T Consensus 319 v~~ 321 (344)
T KOG4532|consen 319 VKN 321 (344)
T ss_pred ccc
Confidence 443
No 306
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.66 E-value=3.7e-07 Score=89.41 Aligned_cols=254 Identities=13% Similarity=0.189 Sum_probs=158.4
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCce-----eEEEecCCCC------------CeEEEEEcCCC-CcEEEE
Q 001386 797 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK-----TILTIMPPSP------------TATSLAFNPHD-NNVIAI 857 (1088)
Q Consensus 797 ~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~-----~~~~~~~~~~------------~i~~l~~sp~d-~~~las 857 (1088)
....|+++.|...|.++++|. +|.|.+|.-+... ....+++|.. .|..+.|-.+. ...+..
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 567799999999999999998 7889999765432 2333555542 35666665422 235556
Q ss_pred EeCCCeEEEEEcCCcee-------------------------------------e----ee-e-ccccCCeeEEEECCCC
Q 001386 858 GMDDSTILIYNARSSEV-------------------------------------I----SK-L-EGHSKRVTGLVFSDAL 894 (1088)
Q Consensus 858 g~~dg~i~lwd~~~~~~-------------------------------------~----~~-l-~~h~~~V~~l~~s~dg 894 (1088)
.+.|.+|++|.+....+ + .+ . .+|.-.|.++.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 67899999998743200 0 00 1 3577789999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCC--ccCCCCeEEEEEcCCCCEEEE--EeCCeEEEEEcCccee-ee--
Q 001386 895 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV--MTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTC-LK-- 967 (1088)
Q Consensus 895 ~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~fs~dg~~l~~--~~d~~i~vwd~~~~~~-~~-- 967 (1088)
..++++ .|-.|.+|+++-..... .+-....+ ......|++..|+|....+.. ++.|.|++-|++.... ..
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sF--nIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~ 261 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSF--NIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK 261 (460)
T ss_pred heeeec-cceeeeeccccccCCce--EEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence 988876 46679999987533111 11111111 111135789999998766555 6779999999884321 11
Q ss_pred ----e--------eecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCc-eEEEeccccc----cCCCCccccccc-
Q 001386 968 ----Q--------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE-VQCRILSTAY----LRPTTSCLHVYP- 1029 (1088)
Q Consensus 968 ----~--------~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~-~~~~~~~~~~----~~~~~~~~~~~~- 1029 (1088)
. ++.+-...|..+.||++|+++++-+. -+|++||+...+ ++..+..+.- +...+-.+.++.
T Consensus 262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence 0 11122567889999999999997643 589999987653 3333321111 011111233333
Q ss_pred eEEEECCCCCCEEEEEeCCCcEEEEe
Q 001386 1030 HAIAAHPLKPTQFAVGLTNGEVYVIE 1055 (1088)
Q Consensus 1030 ~~~~~~p~d~~~l~~~~~dg~v~~w~ 1055 (1088)
..+.|+. |...+.+|+-.+...++-
T Consensus 341 FeisfSg-d~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 341 FEISFSG-DDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEEEecC-Ccccccccccccceeeec
Confidence 5677886 456666676666555554
No 307
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.66 E-value=3.2e-07 Score=89.76 Aligned_cols=119 Identities=21% Similarity=0.299 Sum_probs=90.5
Q ss_pred CCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCce---eEEEecCCC-----CCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 001386 796 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK---TILTIMPPS-----PTATSLAFNPHDNNVIAIGMDDSTILIY 867 (1088)
Q Consensus 796 ~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~---~~~~~~~~~-----~~i~~l~~sp~d~~~lasg~~dg~i~lw 867 (1088)
.|...+.++.|..|.+.++++.+=.|-+|++.--. .+..+++|. .-|++..|+|.....+...+..|.|++-
T Consensus 170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 47888999999999999999999999999986432 233344454 3478899999888889999999999999
Q ss_pred EcCCcee----------------eeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q 001386 868 NARSSEV----------------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 915 (1088)
Q Consensus 868 d~~~~~~----------------~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~ 915 (1088)
|++...+ +.-+.+-...|..+.|+++|+++++-+. -+|+|||+...+
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence 9984321 1112223456888999999999997554 579999998743
No 308
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.64 E-value=8.7e-06 Score=78.59 Aligned_cols=199 Identities=14% Similarity=0.104 Sum_probs=134.4
Q ss_pred CCCEEEEEe-CCcEEEEEcCCceeEEE-ecCCCCCeE---EEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccC
Q 001386 809 NDAYLFSAS-GGVISLYIVMTFKTILT-IMPPSPTAT---SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK 883 (1088)
Q Consensus 809 dg~~l~~~~-dg~i~iwd~~~~~~~~~-~~~~~~~i~---~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~ 883 (1088)
...+||.|+ .|...+|...+.+.... ...+...|+ ..+-+ .--+..++.|.++++.++.-+.....+....-
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~---~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~ 159 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDL---KFPLNIASNDHTGKTMVVSGDSNKFAVHNQNL 159 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccc---ccceeeccCCcceeEEEEecCcccceeecccc
Confidence 344677764 78999999986654332 233333332 22222 23455677888888888775543322221212
Q ss_pred CeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCc
Q 001386 884 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE 962 (1088)
Q Consensus 884 ~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~ 962 (1088)
.+.++++|+|++++++.++...|..|.++............... ..-.+..|+.....+|+ ..||++.|||++.
T Consensus 160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~-----D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~ 234 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS-----DHGFYNSFSENDLQFAVVFQDGTCAIYDVRN 234 (344)
T ss_pred ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC-----CCceeeeeccCcceEEEEecCCcEEEEEecc
Confidence 38899999999999999999999999998755333331111111 12467899999999988 5899999999986
Q ss_pred ceeee----eeecCCCcCEEEEEEeeCCC--EEEEEeCCCcEEEEEcCCCceEEEeccc
Q 001386 963 LTCLK----QWFPISSVPISQATFSCDCR--MVFTSFVDGTLSIHEASNLEVQCRILST 1015 (1088)
Q Consensus 963 ~~~~~----~~~~~h~~~v~~l~fs~dg~--~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 1015 (1088)
..... ...+.|.+.++.+.||+-|. +|+..-.-+.+.|-|+.++.-...+.+.
T Consensus 235 ~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~ 293 (344)
T KOG4532|consen 235 MATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIP 293 (344)
T ss_pred cccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecC
Confidence 54332 23456899999999998664 3555556688999999999877766533
No 309
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.63 E-value=7.4e-06 Score=91.56 Aligned_cols=184 Identities=12% Similarity=0.073 Sum_probs=118.5
Q ss_pred EEEecCCCEEEEEe--CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC----eEEEEEcCCceeeee
Q 001386 804 FALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS----TILIYNARSSEVISK 877 (1088)
Q Consensus 804 ~~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg----~i~lwd~~~~~~~~~ 877 (1088)
+-++|||+.+...+ .+.+.+.|.++.+...++.-.. ....++++| +++++++.+.+. ++..-+..+...+..
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 34567887775554 5778899999888777765332 456789999 788888776432 222222222111111
Q ss_pred eccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCC----CceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE--e
Q 001386 878 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG----WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--H 951 (1088)
Q Consensus 878 l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~--~ 951 (1088)
+.-. .+ -++.++|++... .++.|.+.|..+ +. .....+.... ....+.+||||++++++ .
T Consensus 276 fni~--~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~-~v~~yIPVGK-------sPHGV~vSPDGkylyVankl 341 (635)
T PRK02888 276 FNIA--RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGS-ALTRYVPVPK-------NPHGVNTSPDGKYFIANGKL 341 (635)
T ss_pred EchH--HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCc-ceEEEEECCC-------CccceEECCCCCEEEEeCCC
Confidence 1100 00 133457887665 367799999887 22 1222233322 35679999999999994 5
Q ss_pred CCeEEEEEcCccee------------eeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCC
Q 001386 952 ETHLAIYEAEELTC------------LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1005 (1088)
Q Consensus 952 d~~i~vwd~~~~~~------------~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~ 1005 (1088)
++++.|.|+++.+. ..+... .......+|.++|....|..-|..|..|++..
T Consensus 342 S~tVSVIDv~k~k~~~~~~~~~~~~vvaevev--GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 342 SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCcEEEEEChhhhhhhhccCCccceEEEeecc--CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 78999999998653 222222 44556789999998888888999999999987
No 310
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=3.2e-06 Score=87.50 Aligned_cols=214 Identities=13% Similarity=0.161 Sum_probs=145.1
Q ss_pred cCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC--C-ceeEEeccCCccEEEEeeeeeCCceEEEEEec-CCeEEEE
Q 001386 439 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT--G-SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAW 514 (1088)
Q Consensus 439 ~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iw 514 (1088)
-|...|+.+.-+.. + ++.+++.||.++.|--.. | +.+..+..|-+.|.+++. +-++.++.|.+. |..++++
T Consensus 7 mhrd~i~hv~~tka-~--fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~--S~dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA-K--FIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAV--SYDGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred cccceeeeEeeehh-h--eEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhc--cccceeEeeccCcccceeEE
Confidence 47777887766543 4 799999999999997332 1 234556678888888877 447778888777 9999999
Q ss_pred ECCCCCceEEecCCCCceEEEEEccCCC--EEEEEeeCCCCceeEEEEeCCCCc-eeEEEeccccccccEEEEEEeCCCC
Q 001386 515 LYDSLGARVDYDAPGLGCTRMAYSANGR--RLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTAKD 591 (1088)
Q Consensus 515 d~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~ 591 (1088)
|+.+-.....+....-+-.+-.+...|. -+++.+. -.++.+.++|..... ....+.+. |..+|.++.+++.+.
T Consensus 82 DvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~--~~sg~i~VvD~~~d~~q~~~fkkl--H~sPV~~i~y~qa~D 157 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSL--FKSGKIFVVDGFGDFCQDGYFKKL--HFSPVKKIRYNQAGD 157 (558)
T ss_pred EeeccchhhhcccccCCCceEEecCCCCeeeeEEeec--ccCCCcEEECCcCCcCccceeccc--ccCceEEEEeecccc
Confidence 9987665433222222212222333332 2233322 235668999977554 23333322 248999999999999
Q ss_pred EEEEEeCCCcEEEEEcCC------CeeeEEEeCC-------CCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCccc
Q 001386 592 QILAAGDDHVIKIWDMNK------VQLLTTIDAG-------GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD 658 (1088)
Q Consensus 592 ~l~~~s~dg~i~iwd~~~------~~~~~~~~~~-------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 658 (1088)
.+++....|.|.-|.... .+....++.. .......++.|+|+|..+.+-+.|..|++++..+++.++
T Consensus 158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence 999999999999999873 1122222111 112345789999999999999999999999999998776
Q ss_pred ccc
Q 001386 659 AAG 661 (1088)
Q Consensus 659 ~~~ 661 (1088)
.+.
T Consensus 238 eiD 240 (558)
T KOG0882|consen 238 EID 240 (558)
T ss_pred hhh
Confidence 654
No 311
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.58 E-value=1.2e-05 Score=83.87 Aligned_cols=195 Identities=13% Similarity=0.092 Sum_probs=122.0
Q ss_pred CCCEEEEE-eCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee-cccc---C
Q 001386 809 NDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHS---K 883 (1088)
Q Consensus 809 dg~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l-~~h~---~ 883 (1088)
++..++++ .++.+..||..+|+.+..+............ .+..+++++.++.++.+|..+|+.+... .... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee---cccccccccceeeeEecccCCcceeeeeccccccccc
Confidence 44555555 5899999999999999887753321122222 2345666778889999999999998874 3221 1
Q ss_pred CeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcc--CCCCeEEEEEcCCCCEEEEEeCCe-EEEEEc
Q 001386 884 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT--LAPSETHIQFHKDQTRFLLVHETH-LAIYEA 960 (1088)
Q Consensus 884 ~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~fs~dg~~l~~~~d~~-i~vwd~ 960 (1088)
.........++..++.+..++.|..+|+++|+..-........+... ....+..-....++..+++..++. +.+ |+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~ 190 (238)
T PF13360_consen 112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DL 190 (238)
T ss_dssp TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ET
T ss_pred cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-EC
Confidence 11223333347888888889999999999987544333322221110 001122333344555555556675 555 99
Q ss_pred CcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEE
Q 001386 961 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1011 (1088)
Q Consensus 961 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~ 1011 (1088)
.+++.+.+.. ...+.. ....++..|+.++.++.|..||+.+|+.+..
T Consensus 191 ~tg~~~w~~~---~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 191 ATGEKLWSKP---ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TTTEEEEEEC---SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred CCCCEEEEec---CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 9999664322 122222 2457788888888999999999999997643
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.58 E-value=8e-05 Score=87.38 Aligned_cols=241 Identities=15% Similarity=0.201 Sum_probs=142.8
Q ss_pred ccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCccc
Q 001386 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD 658 (1088)
Q Consensus 579 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 658 (1088)
+.|.++.|..+.+.++.+...|.|.+-|.++......-.... .|.+++||||+..++..+..+++.+.... -.++.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~---GI~aaswS~Dee~l~liT~~~tll~mT~~-f~~i~ 144 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDN---GISAASWSPDEELLALITGRQTLLFMTKD-FEPIA 144 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccC---ceEEEeecCCCcEEEEEeCCcEEEEEecc-ccchh
Confidence 579999999999999999999999999888765544333333 48999999999999999998888775432 11110
Q ss_pred ccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEE
Q 001386 659 AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKIS 738 (1088)
Q Consensus 659 ~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~ 738 (1088)
....+.+ ..+.+..+.+|++...-
T Consensus 145 E~~L~~d------~~~~sk~v~VGwGrkeT-------------------------------------------------- 168 (1265)
T KOG1920|consen 145 EKPLDAD------DERKSKFVNVGWGRKET-------------------------------------------------- 168 (1265)
T ss_pred ccccccc------cccccccceecccccce--------------------------------------------------
Confidence 0000000 00000000000000000
Q ss_pred EEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeec-cCCCCCCCCeeEEEEecCCCEEEEEe
Q 001386 739 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVND-TTDSNSQEAVPCFALSKNDAYLFSAS 817 (1088)
Q Consensus 739 ~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~dg~~l~~~~ 817 (1088)
.|... .|.....+ .+.... .....-.+.=+.++|--||+++|+..
T Consensus 169 --qfrgs---------~gr~~~~~-----------------------~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~ 214 (1265)
T KOG1920|consen 169 --QFRGS---------EGRQAARQ-----------------------KIEKEKALEQIEQDDHKTSISWRGDGEYFAVSF 214 (1265)
T ss_pred --eeecc---------hhhhcccc-----------------------cccccccccchhhccCCceEEEccCCcEEEEEE
Confidence 00000 00000000 000000 00000122334688999999999853
Q ss_pred -----C-CcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEe---CCCeEEEEEcCC---ceeeeeeccccCCe
Q 001386 818 -----G-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---DDSTILIYNARS---SEVISKLEGHSKRV 885 (1088)
Q Consensus 818 -----d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~---~dg~i~lwd~~~---~~~~~~l~~h~~~V 885 (1088)
+ ..|++||-+ |..-.+-....+.-.+++|-| .|.++|+-. .|+.|.+|.-+. |+....+.....+|
T Consensus 215 ~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~v 292 (1265)
T KOG1920|consen 215 VESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEV 292 (1265)
T ss_pred EeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccch
Confidence 4 679999987 554433333344557899999 788888743 455799988542 33333444455669
Q ss_pred eEEEECCCCCEEEE---EeCCCcEEEEEcCCCc
Q 001386 886 TGLVFSDALNILVS---SGGDAQIFVWDVDGWG 915 (1088)
Q Consensus 886 ~~l~~s~dg~~las---~s~Dg~i~iwd~~~~~ 915 (1088)
..++|+.++..||+ ......|++|-+.+..
T Consensus 293 e~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 293 EELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred heeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 99999999999998 5555669999998854
No 313
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.57 E-value=4.2e-06 Score=93.01 Aligned_cols=308 Identities=10% Similarity=0.109 Sum_probs=170.3
Q ss_pred ceeeeecCCCCeEEEEEcc----cCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEE
Q 001386 337 PMSMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1088)
Q Consensus 337 V~~v~~spdg~~lla~g~~----dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~la 412 (1088)
-+...|+|... ++|+++. .|.|.|+- ++|++-+... -.-.+++++|+|..-.||
T Consensus 18 sti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--------------------~P~hatSLCWHpe~~vLa 75 (1416)
T KOG3617|consen 18 STISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT--------------------YPVHATSLCWHPEEFVLA 75 (1416)
T ss_pred ccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc--------------------cceehhhhccChHHHHHh
Confidence 34567889887 7787764 47888884 6676544211 112355699999999999
Q ss_pred EEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE--eccC--CccE
Q 001386 413 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS--FEGH--GAPV 488 (1088)
Q Consensus 413 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~--~~~~--~~~v 488 (1088)
.|..-|.+.+|...+.+.-. ....|..+|.-+.||++|. .++++..-|.+.+|....-..+.. +-.| ...+
T Consensus 76 ~gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~l 150 (1416)
T KOG3617|consen 76 QGWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQL 150 (1416)
T ss_pred hccccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeeeccccccchhhhhHhhcee
Confidence 99999999999988765322 4457999999999999999 899999999999998763222221 1122 2334
Q ss_pred EEEeeeeeCCce------EEEEEecCCeEE-EEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEe
Q 001386 489 YSLCPHAKENIH------FIFSISVDGKIK-AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1088)
Q Consensus 489 ~~~~~~~~~~~~------~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd 561 (1088)
+-++|.-+.++. ..+..+.+..+- .++++......... -.=.|+|..++.++. +++|+-.|
T Consensus 151 tl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~--------ksgv~~g~~F~~~~~----~GtVyyvd 218 (1416)
T KOG3617|consen 151 TLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE--------KSGVPKGTEFLFAGK----SGTVYYVD 218 (1416)
T ss_pred eEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc--------ccCCCCCcEEEEEcC----CceEEEEc
Confidence 444444333321 122223332222 33332111111000 012367777777664 44466665
Q ss_pred CCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcC-C----------------------------Cee
Q 001386 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN-K----------------------------VQL 612 (1088)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~-~----------------------------~~~ 612 (1088)
- .|+.....+... . ..+-|.+...-+++.-.+-++.++-.. + |-+
T Consensus 219 q-~g~~~~V~k~dS----~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvL 292 (1416)
T KOG3617|consen 219 Q-NGRQRTVHKLDS----E-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVL 292 (1416)
T ss_pred C-CCcEEEEEEccc----h-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccc
Confidence 3 333333332211 0 001111111111111111111111100 0 100
Q ss_pred e--EEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCC----------cccccccccCcceeeeecCCCccee
Q 001386 613 L--TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN----------SVDAAGVLSDNLRKLSVNPISTVTG 680 (1088)
Q Consensus 613 ~--~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~----------~~~~~~~~~~~v~~~~~~p~~~~~~ 680 (1088)
. ..+.. .....+.|++++..+..++.|...|.+.+|.-.... .+.........|+.+.|.|.....+
T Consensus 293 r~~eKyg~-e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~a 371 (1416)
T KOG3617|consen 293 RKSEKYGL-ELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAA 371 (1416)
T ss_pred cCCcchhh-hcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhh
Confidence 0 00101 112357899999999999999999999999654331 1222333456788888988777666
Q ss_pred ccccCCceee
Q 001386 681 AGIANGSVSV 690 (1088)
Q Consensus 681 ~~~~~~~~~~ 690 (1088)
+.+....+.+
T Consensus 372 vn~~~~v~ll 381 (1416)
T KOG3617|consen 372 VNTEEDVVLL 381 (1416)
T ss_pred hhhhhheeee
Confidence 6665544444
No 314
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.56 E-value=4.7e-05 Score=78.82 Aligned_cols=251 Identities=15% Similarity=0.182 Sum_probs=156.0
Q ss_pred EEEEEEecCCceEEEecc----------ccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCC---CCCCCeeE
Q 001386 737 ISRLTYNNGGQAIFALAS----------NGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDS---NSQEAVPC 803 (1088)
Q Consensus 737 i~~~~~s~~g~~l~~~~~----------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~ 803 (1088)
...++.+|+++.+++... ...|.+||..+- .......++.. ........
T Consensus 38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL------------------~~~~EI~iP~k~R~~~~~~~~~ 99 (342)
T PF06433_consen 38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTL------------------SPTGEIEIPPKPRAQVVPYKNM 99 (342)
T ss_dssp SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTT------------------EEEEEEEETTS-B--BS--GGG
T ss_pred CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcC------------------cccceEecCCcchheecccccc
Confidence 345778899998876432 345667765432 22333333321 01123345
Q ss_pred EEEecCCCEEEEEe---CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcC-Cceeeeee-
Q 001386 804 FALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-SSEVISKL- 878 (1088)
Q Consensus 804 ~~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~-~~~~~~~l- 878 (1088)
+++|.||+++.+.. ...|.|.|+...+.+.++..+.+ .. .+ |.+++-+.+-+.||++.-..+. .|+...+.
T Consensus 100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC-~~--iy-P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t 175 (342)
T PF06433_consen 100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC-WL--IY-PSGNRGFSMLCGDGSLLTVTLDADGKEAQKST 175 (342)
T ss_dssp EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE-EE--EE-EEETTEEEEEETTSCEEEEEETSTSSEEEEEE
T ss_pred eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE-EE--EE-ecCCCceEEEecCCceEEEEECCCCCEeEeec
Confidence 78999999999886 56799999999999988874432 11 12 2133457788899999998887 45543221
Q ss_pred ---ccccCC-eeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC------CCccCCCCeEEEEEcCCCCEEE
Q 001386 879 ---EGHSKR-VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD------GVMTLAPSETHIQFHKDQTRFL 948 (1088)
Q Consensus 879 ---~~h~~~-V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~fs~dg~~l~ 948 (1088)
..-..+ +..-+++..+..++..+.+|.|+--|+............... +-.. +.-.-+++++..+.|.
T Consensus 176 ~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrP--GG~Q~~A~~~~~~rly 253 (342)
T PF06433_consen 176 KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRP--GGWQLIAYHAASGRLY 253 (342)
T ss_dssp EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE---SSS-EEEETTTTEEE
T ss_pred cccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCC--cceeeeeeccccCeEE
Confidence 111122 223344555666666889999999999887655544444332 1111 3456789988776665
Q ss_pred E-E---eCC-------eEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCC-EEEEEe-CCCcEEEEEcCCCceEEEec
Q 001386 949 L-V---HET-------HLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 949 ~-~---~d~-------~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~s~s-~dg~v~vwd~~~~~~~~~~~ 1013 (1088)
+ . .++ .|-++|+.+++.+..+... .++.++..|.|.+ +|++.+ .++.+.|||..+|+++.++.
T Consensus 254 vLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 254 VLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 5 2 222 4888899999999887653 3577999999887 444444 57899999999999998876
No 315
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.55 E-value=2.6e-07 Score=92.01 Aligned_cols=168 Identities=16% Similarity=0.105 Sum_probs=126.1
Q ss_pred eeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCC
Q 001386 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417 (1088)
Q Consensus 338 ~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~d 417 (1088)
+.++||-+-.-+-++.+.+..|-+-|++||.... +. ..+.|.++.|...+.++..|..+
T Consensus 215 ~~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f~-sksDVfAlQf~~s~nLv~~GcRn 273 (425)
T KOG2695|consen 215 WSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------FQ-SKSDVFALQFAGSDNLVFNGCRN 273 (425)
T ss_pred hhhhhhhccceeeecccccceeEEEEeecccccc--------------------cc-cchhHHHHHhcccCCeeEecccC
Confidence 3446664332233445556788999999986432 22 56789999999999999999999
Q ss_pred CEEEEEEccCCCc--ccceeEeccCCCCEEEEEecC-CCCcEEEEEEeCCCcEEEEeCCCCce---eEEeccCCccEEEE
Q 001386 418 HIVQLYAYHGGSD--ARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPVYSL 491 (1088)
Q Consensus 418 g~i~vwd~~~~~~--~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~s~d~~i~vwd~~~~~~---~~~~~~~~~~v~~~ 491 (1088)
|.|...|+..+.. .... .---|...|+++.... +++ +|.+.+.+|.|++||.+--++ +.++.||...-..+
T Consensus 274 geI~~iDLR~rnqG~~~~a-~rlyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l 350 (425)
T KOG2695|consen 274 GEIFVIDLRCRNQGNGWCA-QRLYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL 350 (425)
T ss_pred CcEEEEEeeecccCCCcce-EEEEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccc
Confidence 9999999986521 1111 1225889999998777 555 788899999999999987666 88999997766666
Q ss_pred eeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCC
Q 001386 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG 529 (1088)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 529 (1088)
-++-.+....+++++.|-..|+|.++.+....++....
T Consensus 351 ~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 351 PAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred ccccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 56656666789999999999999999888777665543
No 316
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.54 E-value=1.6e-06 Score=83.16 Aligned_cols=209 Identities=14% Similarity=0.204 Sum_probs=125.1
Q ss_pred ceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeC
Q 001386 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 416 (1088)
Q Consensus 337 V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~ 416 (1088)
|+.+.|+-+- .|+++..++.+.....-++.+.. .|+......++. .+..|.++-.+-+.+--+..+++++.
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~~~~--~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDDGIDPFK--VLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEec-----hhhcccCcCcee--eeeccCCCCCcccccccCCceEecCC
Confidence 6667777654 57888888887777666554432 121111111111 13345555555555556788999999
Q ss_pred CCEEEEEEccCCCcccceeEec-cCCCCEEEEEecCCCCcEEEEEEe-----CCCcEEEEeCCCCceeEEeccCCccEEE
Q 001386 417 KHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHGAPVYS 490 (1088)
Q Consensus 417 dg~i~vwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~s-----~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 490 (1088)
||.+.+.+.+.-..+. ..+. .|.+ -.+......++ .+.+++ .-+..+.|+++..+.+..-..-...|.+
T Consensus 110 dg~~~v~s~~~~~~~~--~~i~~~~~~-~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDKDLALM--SRIPSIHSG-SASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CceEEEEechHHHhhh--hhccccccc-ccccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 9999999987622111 1111 1222 11222333344 233222 1223456665543322111112234888
Q ss_pred EeeeeeCCceEEEEEecCCeEEEEECCCCCceE-EecCCCCceEEEEEcc-CCCEEEEEeeCCCCceeEEEEeCCC
Q 001386 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESE 564 (1088)
Q Consensus 491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd~~~ 564 (1088)
++-+|... +.+++|+.||.+-+||++...... .+..|..++..+-|+| ++..|++++. ++.+..||..+
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~ 255 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST 255 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence 88887654 689999999999999999875543 5667888999999999 6778888876 44599999764
No 317
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.51 E-value=5.9e-05 Score=83.30 Aligned_cols=267 Identities=13% Similarity=0.179 Sum_probs=150.0
Q ss_pred cCCCCeEEEEE--------cccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE
Q 001386 343 HPVQHTLLLVG--------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1088)
Q Consensus 343 spdg~~lla~g--------~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~ 414 (1088)
||||+++|+.- +..+.+.|||+.+++.... ......+....|||||+++|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l--------------------~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPL--------------------TPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEES--------------------S-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEEC--------------------cCCccccccceeecCCCeeEEE
Confidence 78999655522 1236789999999765532 1125678899999999999998
Q ss_pred eCCCEEEEEEccCCCcccceeEecc-------C---------CCCEEEEEecCCCCcEEEEEEeCCCc------------
Q 001386 415 YSKHIVQLYAYHGGSDARQQLEIDA-------H---------VGNVNDLAFSAPCKQISVITCGDDKT------------ 466 (1088)
Q Consensus 415 ~~dg~i~vwd~~~~~~~~~~~~~~~-------h---------~~~v~~~~~s~d~~~l~l~s~s~d~~------------ 466 (1088)
. ++.|.+++..+++..+. +..| - -+.-..+.|||||+++.++... +..
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d-~~~v~~~~~~~~~~~ 136 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD-EREVPEYPLPDYSPP 136 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE--TTS-EEEEEEESSS
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC-CcCCceEEeeccCCc
Confidence 5 56799999887743321 1222 0 1123568899999953322221 111
Q ss_pred -----------------------EEEEeCCCCceeE-Ee----ccCCccEEEEeeeeeCCceEEEEE--ecCC---eEEE
Q 001386 467 -----------------------IKVWDAVTGSRTY-SF----EGHGAPVYSLCPHAKENIHFIFSI--SVDG---KIKA 513 (1088)
Q Consensus 467 -----------------------i~vwd~~~~~~~~-~~----~~~~~~v~~~~~~~~~~~~~l~s~--~~dg---~i~i 513 (1088)
+.|+|+.+++... .. ..-...+..+.|.+ ++..|+.. ..+. .+.+
T Consensus 137 ~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~--d~~~l~~~~~nR~q~~~~l~~ 214 (353)
T PF00930_consen 137 DSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP--DGKRLWVQWLNRDQNRLDLVL 214 (353)
T ss_dssp TESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE--TTEEEEEEEEETTSTEEEEEE
T ss_pred cccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecC--CCcEEEEEEcccCCCEEEEEE
Confidence 2344555554321 11 12233455566643 44423332 2222 2666
Q ss_pred EECCCCCceEEecCC-CCc---eEEEEEc-cCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEE-EEEEe
Q 001386 514 WLYDSLGARVDYDAP-GLG---CTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVS-VVHFD 587 (1088)
Q Consensus 514 wd~~~~~~~~~~~~~-~~~---v~~~~~s-~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~-~~~~~ 587 (1088)
+|..++......... ... .....|. +++..++..+. ++|-..|++++..++... .+.... ..|. .+.++
T Consensus 215 ~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~-~lT~G~---~~V~~i~~~d 289 (353)
T PF00930_consen 215 CDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPR-QLTSGD---WEVTSILGWD 289 (353)
T ss_dssp EEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEE-ESS-SS---S-EEEEEEEE
T ss_pred EECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEccccccee-ccccCc---eeecccceEc
Confidence 677766554433222 222 2245554 88887777776 777889999998888744 333222 4564 46788
Q ss_pred CCCCEEEE-EeC----CCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC
Q 001386 588 TAKDQILA-AGD----DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1088)
Q Consensus 588 ~~~~~l~~-~s~----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1088)
++++.++. +.. ...++.-++..+..+..+...... ...+.|||++++++....
T Consensus 290 ~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~--~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 290 EDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD--HYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp CTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST--TEEEEE-TTSSEEEEEEE
T ss_pred CCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC--ceEEEECCCCCEEEEEEc
Confidence 88777664 443 234555566623445555544332 148999999999876654
No 318
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.50 E-value=0.0012 Score=64.05 Aligned_cols=135 Identities=14% Similarity=-0.009 Sum_probs=88.4
Q ss_pred eEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccc
Q 001386 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN 579 (1088)
Q Consensus 500 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~ 579 (1088)
.+++.|+..+.+.--|..++.......... .+.+-+.- -|++++.+..+ +.++..+.++|.....+.... .
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~-RiE~sa~v-vgdfVV~GCy~----g~lYfl~~~tGs~~w~f~~~~---~ 94 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGV-RIECSAIV-VGDFVVLGCYS----GGLYFLCVKTGSQIWNFVILE---T 94 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCc-eeeeeeEE-ECCEEEEEEcc----CcEEEEEecchhheeeeeehh---h
Confidence 467777888888877777776655433222 23222221 56678888763 449999999998777776544 2
Q ss_pred cEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec-CCCEEEEEeCCCcE
Q 001386 580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRI 646 (1088)
Q Consensus 580 ~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i 646 (1088)
--......+++..+.+|+.|++.+..|..+..++...+..+.. ..+-+..| ++.+. .+...|.+
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~~sly-~a~t~G~v 159 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGDGSLY-AAITAGAV 159 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCCceEE-EEeccceE
Confidence 2233456788999999999999999999999998887765543 23344455 44433 33333433
No 319
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.50 E-value=3.7e-07 Score=63.42 Aligned_cols=39 Identities=31% Similarity=0.595 Sum_probs=37.2
Q ss_pred ceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEE
Q 001386 872 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 910 (1088)
Q Consensus 872 ~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd 910 (1088)
|+++..+.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
No 320
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.48 E-value=3e-06 Score=95.34 Aligned_cols=180 Identities=16% Similarity=0.187 Sum_probs=132.6
Q ss_pred CCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeE
Q 001386 809 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 887 (1088)
Q Consensus 809 dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~ 887 (1088)
++..++.|+ ...+..+|+.+.+..+...-..+.++-+.. +++++.+|...|+|.+-|..+.+.++++.+|++.|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 444566665 678899999998888777655555655555 6789999999999999999999999999999999976
Q ss_pred EEECCCCCEEEEEeC---------CCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCC--CCEEEEEeCCeEE
Q 001386 888 LVFSDALNILVSSGG---------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD--QTRFLLVHETHLA 956 (1088)
Q Consensus 888 l~~s~dg~~las~s~---------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d--g~~l~~~~d~~i~ 956 (1088)
+.. .|+.|++||. |.-|+|||+..-. ...+++.+.+ ..-+.|.|. .+..+++..|+..
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr--al~PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR--ALSPIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhh--ccCCcccccC-------chhhhhcccccceEEEEeccccee
Confidence 555 6899999975 4568999998722 1222333322 245677775 3444457889999
Q ss_pred EEEcCcce-e--eeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEE
Q 001386 957 IYEAEELT-C--LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1002 (1088)
Q Consensus 957 vwd~~~~~-~--~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd 1002 (1088)
+-|..+.. . -.......+..+..+++|++|..++.|..+|.|.+|.
T Consensus 292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 99944322 2 1112222355699999999999999999999999998
No 321
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.47 E-value=2.7e-05 Score=87.13 Aligned_cols=136 Identities=13% Similarity=0.077 Sum_probs=90.7
Q ss_pred EecCCCEEEEEeCCcEEEEEcCC----c-eeEEEecCCCCCeEEEEEcCCCCcEEEE-EeCCCeEEEEEcCCcee-----
Q 001386 806 LSKNDAYLFSASGGVISLYIVMT----F-KTILTIMPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEV----- 874 (1088)
Q Consensus 806 ~s~dg~~l~~~~dg~i~iwd~~~----~-~~~~~~~~~~~~i~~l~~sp~d~~~las-g~~dg~i~lwd~~~~~~----- 874 (1088)
+.++|++... .+++|.+.|..+ + +.+..+. -......+++|| ||+++++ +..+.+|.|.|+.+.+.
T Consensus 284 ~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 284 AVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 3457776665 467899999988 3 4444443 456678899999 6776655 45588999999988542
Q ss_pred -------eeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCC------ceeeeeeeecCCCCccCCCCeEEEEE-
Q 001386 875 -------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW------GIQTCRSLQTPDGVMTLAPSETHIQF- 940 (1088)
Q Consensus 875 -------~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~f- 940 (1088)
+.+.+--.+ -...+|.++|....|...|..|..|++... +. ....+....-|.. +-++.-
T Consensus 361 ~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~-~~~v~~k~dV~y~----pgh~~~~ 434 (635)
T PRK02888 361 IKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEK-VDPIVQKLDVHYQ----PGHNHAS 434 (635)
T ss_pred CCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHHHHHHhcccc-CCcceecccCCCc----cceeeec
Confidence 333333233 345789999998888999999999999862 11 1123333332222 334444
Q ss_pred -----cCCCCEEEEE
Q 001386 941 -----HKDQTRFLLV 950 (1088)
Q Consensus 941 -----s~dg~~l~~~ 950 (1088)
.|||++|++.
T Consensus 435 ~g~t~~~dgk~l~~~ 449 (635)
T PRK02888 435 MGETKEADGKWLVSL 449 (635)
T ss_pred CCCcCCCCCCEEEEc
Confidence 7899999983
No 322
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.47 E-value=5.2e-05 Score=78.48 Aligned_cols=285 Identities=12% Similarity=0.124 Sum_probs=156.0
Q ss_pred eeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEe----------CCCcEEEEEcCCCeeeEEEeCCCC---
Q 001386 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGG--- 621 (1088)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----------~dg~i~iwd~~~~~~~~~~~~~~~--- 621 (1088)
..++++|..+++.+..+..- -...+..+|+++.+++++ ..-.|.+||..+-.+...+.....
T Consensus 17 ~rv~viD~d~~k~lGmi~~g-----~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG-----FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE-----SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEeecc-----cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 35999999999988777753 344567899999998754 334699999999988887665432
Q ss_pred --CCCCceEEEecCCCEEEEEeC--CCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCC
Q 001386 622 --LPENPRICFNKNGTLLAVIAN--ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKED 697 (1088)
Q Consensus 622 --~~~v~~v~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 697 (1088)
.......+++.|++++.+... ...|.|.|+..++.+..+....- ..+-|. .
T Consensus 92 ~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC----~~iyP~--------------------~- 146 (342)
T PF06433_consen 92 QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC----WLIYPS--------------------G- 146 (342)
T ss_dssp -BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE----EEEEEE--------------------E-
T ss_pred eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE----EEEEec--------------------C-
Confidence 123456888999998877654 46788888887766554432211 011111 0
Q ss_pred CCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCc
Q 001386 698 VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPR 777 (1088)
Q Consensus 698 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~ 777 (1088)
.+.+.+-+.||.+....++............-......-+..-+++..+..++-.+-+|.|+--++....... ..
T Consensus 147 ~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~-----~~ 221 (342)
T PF06433_consen 147 NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKF-----GK 221 (342)
T ss_dssp TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEE-----EE
T ss_pred CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccc-----cC
Confidence 0112333344444433333111111111111111122223334455555555556667777766665443211 11
Q ss_pred ccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe----C-------CcEEEEEcCCceeEEEecCCCCCeEEEE
Q 001386 778 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----G-------GVISLYIVMTFKTILTIMPPSPTATSLA 846 (1088)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~----d-------g~i~iwd~~~~~~~~~~~~~~~~i~~l~ 846 (1088)
-|.+.+..... ... ..+.-.-+++++....|.+.- + ..|.++|+.+++.+..+.. ...+.+++
T Consensus 222 ~~~~~t~~e~~-~~W----rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~ 295 (342)
T PF06433_consen 222 PWSLLTDAEKA-DGW----RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIA 295 (342)
T ss_dssp EEESS-HHHHH-TTE----EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEE
T ss_pred cccccCccccc-cCc----CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEE
Confidence 12221100000 000 012223467777655555432 1 1389999999999998873 34577999
Q ss_pred EcCCCCcEEEEE-eCCCeEEEEEcCCceeeeeecc
Q 001386 847 FNPHDNNVIAIG-MDDSTILIYNARSSEVISKLEG 880 (1088)
Q Consensus 847 ~sp~d~~~lasg-~~dg~i~lwd~~~~~~~~~l~~ 880 (1088)
.+.++..+|++. ..++.+.+||..+|+.+.++++
T Consensus 296 Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 296 VSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 999666577654 4579999999999999988874
No 323
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.47 E-value=0.00044 Score=66.93 Aligned_cols=145 Identities=14% Similarity=0.091 Sum_probs=94.4
Q ss_pred eecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCEE
Q 001386 341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 420 (1088)
Q Consensus 341 ~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~i 420 (1088)
..-+|.+.+++.|+..+.+.--|..+|+..-... -+..|.+-+.- -|++++.|...|.+
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We~i--------------------lg~RiE~sa~v-vgdfVV~GCy~g~l 75 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI--------------------LGVRIECSAIV-VGDFVVLGCYSGGL 75 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEEeehh--------------------hCceeeeeeEE-ECCEEEEEEccCcE
Confidence 3445667789999999999999999998664311 12233332222 47889999999999
Q ss_pred EEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCce
Q 001386 421 QLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH 500 (1088)
Q Consensus 421 ~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 500 (1088)
++-+.++|+....+..+.. -=......+++. ++..++.|++.+..|..+..++...+...+...+-++.+- ++
T Consensus 76 Yfl~~~tGs~~w~f~~~~~---vk~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~~- 148 (354)
T KOG4649|consen 76 YFLCVKTGSQIWNFVILET---VKVRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-DG- 148 (354)
T ss_pred EEEEecchhheeeeeehhh---hccceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCC-Cc-
Confidence 9999999976654332221 112234566777 8999999999999999999999887644333333333221 22
Q ss_pred EEEEEecCCeEEE
Q 001386 501 FIFSISVDGKIKA 513 (1088)
Q Consensus 501 ~l~s~~~dg~i~i 513 (1088)
.|..+...|.|.-
T Consensus 149 sly~a~t~G~vla 161 (354)
T KOG4649|consen 149 SLYAAITAGAVLA 161 (354)
T ss_pred eEEEEeccceEEE
Confidence 3444444454443
No 324
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=2e-05 Score=80.74 Aligned_cols=251 Identities=12% Similarity=0.151 Sum_probs=148.9
Q ss_pred eecCCCCCeEEEEECCCCC-EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEE
Q 001386 391 LVRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~dg~-~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~v 469 (1088)
++.+|+..|..++|||..+ ++..++.+..|+|.|+++...+. .+..| ..+++++|.-|..+ ++..|-..|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5788999999999999776 78889999999999999976555 45556 78999999999877 8899999999999
Q ss_pred EeCCCCce-eEEecc--CCccEEEEeeeee----CCceEEEEEecCCeEEEEECCCCCc--eEEec-CCCCceEEEEEcc
Q 001386 470 WDAVTGSR-TYSFEG--HGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLGA--RVDYD-APGLGCTRMAYSA 539 (1088)
Q Consensus 470 wd~~~~~~-~~~~~~--~~~~v~~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~-~~~~~v~~~~~s~ 539 (1088)
||++..+- +..+.+ ...+|..++..+. +.|.+++..+.+ +..|++..... ..... ...+.+.++...+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99986542 222222 2334444332211 122344444433 44565543222 11122 2244566777777
Q ss_pred CCCEEEEEeeCCCCceeEE----EEeCCCCceeEEEe-cc---cccc-ccEEEEEEeCCCCEEEE-EeCCCcEEEEEcCC
Q 001386 540 NGRRLFSCGTSKEGESFLV----EWNESEGAIKRTYQ-GL---QLQH-NSVSVVHFDTAKDQILA-AGDDHVIKIWDMNK 609 (1088)
Q Consensus 540 ~g~~l~~~~~~~~~~~~i~----iwd~~~~~~~~~~~-~~---~~~~-~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~ 609 (1088)
-.+.++....+...-..++ --|-.+|..+-.-+ ++ ...+ ..-..+.-.++.++++. +...+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 6677766655432211111 11222333221111 11 0000 00111222345566655 55668899999999
Q ss_pred CeeeEEEeCCCCCCCCceEEEec-C-CCEEEEEeCCCcEEEEeCC
Q 001386 610 VQLLTTIDAGGGLPENPRICFNK-N-GTLLAVIANENRIKILETP 652 (1088)
Q Consensus 610 ~~~~~~~~~~~~~~~v~~v~~s~-~-~~~l~~~~~dg~i~iwd~~ 652 (1088)
++.++++.... +|..++... + +.+|++-+ |..++||..+
T Consensus 421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALSE---PVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hheeeecccCc---ceeecceeecCCcchhhhee-cceEEEEecC
Confidence 99999998663 355555443 3 34565555 4588888654
No 325
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.44 E-value=6.2e-05 Score=88.26 Aligned_cols=283 Identities=11% Similarity=0.162 Sum_probs=159.4
Q ss_pred CCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEE
Q 001386 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1088)
Q Consensus 333 h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~la 412 (1088)
..+.|.++.|.-++.. ++.+..+|.|.+-|.++....- ...-...|.+++||||++.+|
T Consensus 67 gd~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~ 125 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNS-ICVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLA 125 (1265)
T ss_pred CCcceEEEEEecccce-EEEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEE
Confidence 3469999999999884 6777888999999988876443 233568899999999999999
Q ss_pred EEeCCCEEEEEEccCCCcccceeEec---cCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-ceeEEeccCCccE
Q 001386 413 VAYSKHIVQLYAYHGGSDARQQLEID---AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPV 488 (1088)
Q Consensus 413 s~~~dg~i~vwd~~~~~~~~~~~~~~---~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~-~~~~~~~~~~~~v 488 (1088)
..+..+++.+-+-. -..+... .+. ...+....+-|-...++ +-|+ .|...--+.... +.+.....+ ..=
T Consensus 126 liT~~~tll~mT~~-f~~i~E~-~L~~d~~~~sk~v~VGwGrkeTq---frgs-~gr~~~~~~~~~ek~~~~~~~~-~~~ 198 (1265)
T KOG1920|consen 126 LITGRQTLLFMTKD-FEPIAEK-PLDADDERKSKFVNVGWGRKETQ---FRGS-EGRQAARQKIEKEKALEQIEQD-DHK 198 (1265)
T ss_pred EEeCCcEEEEEecc-ccchhcc-ccccccccccccceeccccccee---eecc-hhhhcccccccccccccchhhc-cCC
Confidence 99988877664331 1111100 010 00011222333222221 1111 111111110000 000000111 112
Q ss_pred EEEeeeeeCCceEEEEE-----ecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC
Q 001386 489 YSLCPHAKENIHFIFSI-----SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1088)
Q Consensus 489 ~~~~~~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 563 (1088)
++++| .+||+++++. ...+.|++||-+ +.....-....+.-.+++|-|.|..+++.....+ +..|.++..+
T Consensus 199 ~~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffErN 274 (1265)
T KOG1920|consen 199 TSISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFERN 274 (1265)
T ss_pred ceEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEecC
Confidence 34555 6788888873 233789999876 3332222233334567999999999998876544 4468888744
Q ss_pred CCceeEEEeccc-cccccEEEEEEeCCCCEEEE---EeCCCcEEEEEcCCCeeeE--EEeCCCCCCCCceEEEecCC-CE
Q 001386 564 EGAIKRTYQGLQ-LQHNSVSVVHFDTAKDQILA---AGDDHVIKIWDMNKVQLLT--TIDAGGGLPENPRICFNKNG-TL 636 (1088)
Q Consensus 564 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~---~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~v~~s~~~-~~ 636 (1088)
|-.-..+.... .....+..++|+.++..|++ ......|++|-+.+..... .+.... ..-+.|+|.. ..
T Consensus 275 -GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~----~~~~~W~p~~~~~ 349 (1265)
T KOG1920|consen 275 -GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQ----KALLMWDPVTEKT 349 (1265)
T ss_pred -CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEeccc----cccccccCCCcee
Confidence 32222221111 01134899999999999888 5555669999987754432 222222 1227888832 34
Q ss_pred EEEEeCCCcEEEEeCC
Q 001386 637 LAVIANENRIKILETP 652 (1088)
Q Consensus 637 l~~~~~dg~i~iwd~~ 652 (1088)
+.+...+|...+++..
T Consensus 350 L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 350 LHVLRESGQRLVRDFA 365 (1265)
T ss_pred EEEEecCCcEEEEEEE
Confidence 4444466766665544
No 326
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.39 E-value=9.2e-07 Score=83.37 Aligned_cols=134 Identities=23% Similarity=0.266 Sum_probs=95.7
Q ss_pred HHHHHHHhcCccHHHHHHhhccCccccCccccchhhhHHHHhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHH
Q 001386 38 MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQ 117 (1088)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ 117 (1088)
...++++|++||++.|++.+....+--....+ .+.|.|++|+|+|||..++..+|+.+.|+++.|......+.++++..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~-~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKRNS-SLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCC-chhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 67899999999999999999876321111112 48999999999999999999999999999997665434466777777
Q ss_pred hhccccccc--ccccccccCCChHHHHHHHHHHHhhcccCccccccccCCCcc-hHHHHHHHHHHHHHH
Q 001386 118 LLTLDDIRD--HELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIK-RQRLRRLINQSLNWQ 183 (1088)
Q Consensus 118 l~~~~~~~~--~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~q 183 (1088)
++...+..+ ...+..+. ....|.++.+.+.+.+-.... +| .+.|..++++....+
T Consensus 84 lL~~~~~~~~~~s~~~~l~--~~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELL--SPERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHcCCcccccchHHHHHh--ChHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence 777665544 22223221 236788888888887655332 44 467888888776554
No 327
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.34 E-value=8.1e-07 Score=61.65 Aligned_cols=38 Identities=29% Similarity=0.455 Sum_probs=35.2
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEe
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWD 363 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd 363 (1088)
.+++++.+|.+.|++|+|+|++. ++++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 45788999999999999999998 799999999999997
No 328
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.30 E-value=8.4e-06 Score=78.41 Aligned_cols=195 Identities=14% Similarity=0.193 Sum_probs=118.7
Q ss_pred CCcEEEEEeCCCeEEEEEcCCce-eeeeecc-ccCCeeEEEECCCCCEEEEEe-----CCCcEEEEEcCCCceeeeeeee
Q 001386 851 DNNVIAIGMDDSTILIYNARSSE-VISKLEG-HSKRVTGLVFSDALNILVSSG-----GDAQIFVWDVDGWGIQTCRSLQ 923 (1088)
Q Consensus 851 d~~~lasg~~dg~i~lwd~~~~~-~~~~l~~-h~~~V~~l~~s~dg~~las~s-----~Dg~i~iwd~~~~~~~~~~~~~ 923 (1088)
-+.-++++..||.+.+++.+.-. ...+... |.+. .+...-..+..+.+++ .-+..+.|+++..+ .....
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~---t~~~~ 175 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIK---TLIPS 175 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccc---ccccc
Confidence 35678999999999999877511 1111111 2221 1122223344444332 11335677766422 11111
Q ss_pred cCCCCccCCCCeEEEEEcCCCCEEEE-E-eCCeEEEEEcCcceeeeeeecCCCcCEEEEEEee-CCCEEEEEeCCCcEEE
Q 001386 924 TPDGVMTLAPSETHIQFHKDQTRFLL-V-HETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSI 1000 (1088)
Q Consensus 924 ~~~~~~~~~~~v~~~~fs~dg~~l~~-~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~s~s~dg~v~v 1000 (1088)
. .....|.+++-.|..+.+++ | .||.+.+||.+.......++..|..++..+-|-| ++..|++++.||.+--
T Consensus 176 ~-----~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~ 250 (319)
T KOG4714|consen 176 K-----KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH 250 (319)
T ss_pred c-----cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence 1 11124888999998777776 4 6789999999999888888899999999999998 7789999999999999
Q ss_pred EEcCCCceEEEec---cccccCCCCcccccc--------ceEE-EECCCCCCEEEEEeCCCcEEEEe
Q 001386 1001 HEASNLEVQCRIL---STAYLRPTTSCLHVY--------PHAI-AAHPLKPTQFAVGLTNGEVYVIE 1055 (1088)
Q Consensus 1001 wd~~~~~~~~~~~---~~~~~~~~~~~~~~~--------~~~~-~~~p~d~~~l~~~~~dg~v~~w~ 1055 (1088)
||..+--+-+... ...|+...+-..++. ..++ +|+- -|..|++|++-+.|++.+
T Consensus 251 wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV-~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 251 WDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDV-LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeec-cCceEEeccccceEEEec
Confidence 9988643322211 112222211111011 0111 1332 456899999999998875
No 329
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.30 E-value=0.00038 Score=76.96 Aligned_cols=307 Identities=12% Similarity=0.096 Sum_probs=156.4
Q ss_pred ccCCCEEEEEeeCC-----CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCee
Q 001386 538 SANGRRLFSCGTSK-----EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612 (1088)
Q Consensus 538 s~~g~~l~~~~~~~-----~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 612 (1088)
|||+++++...... +..+.+.++|+.+++....... . ..+....|+|+|+.++... ++.|.+++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~---~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-P---PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-E---TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-c---cccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 57888877643211 1235589999999876554443 2 5678889999999998886 57899999887754
Q ss_pred eEEEeCCCC---------------CCCCceEEEecCCCEEEEEeCC-CcEEEEeCCCCCcccccccccCcceeeeecCCC
Q 001386 613 LTTIDAGGG---------------LPENPRICFNKNGTLLAVIANE-NRIKILETPESNSVDAAGVLSDNLRKLSVNPIS 676 (1088)
Q Consensus 613 ~~~~~~~~~---------------~~~v~~v~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~ 676 (1088)
.+....... ...-..+.||||+++||....| ..|..+.+........ .-..+..+.+.
T Consensus 76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~---~yp~~~~~~YP--- 149 (353)
T PF00930_consen 76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS---QYPEVESIRYP--- 149 (353)
T ss_dssp EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE---SS-EEEEEE-----
T ss_pred EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc---cCCcccccccC---
Confidence 433221100 1123578999999999887643 4444433221100000 00011111111
Q ss_pred cceeccccCCceeecCCCCCCCCcccccccCccc--eeccccccCCCcceeeecCC--ccccccEEEEEEecCCceEEEe
Q 001386 677 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS--EVEKPLFARPSECQSLLLPS--KVKANKISRLTYNNGGQAIFAL 752 (1088)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i--~vw~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~g~~l~~~ 752 (1088)
..|...-.+ .++++..++.. .+..+. .....-+..+.|+++++.++..
T Consensus 150 -------------------------k~G~~np~v~l~v~~~~~~~~~---~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~ 201 (353)
T PF00930_consen 150 -------------------------KAGDPNPRVSLFVVDLASGKTT---ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQ 201 (353)
T ss_dssp -------------------------BTTS---EEEEEEEESSSTCCC---EE---HHHHTSSEEEEEEEEEETTEEEEEE
T ss_pred -------------------------CCCCcCCceEEEEEECCCCcEE---EeeeccccCCCccCcccceecCCCcEEEEE
Confidence 112222222 33444322221 222221 2245678899999999844433
Q ss_pred cc--c-cceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEe-cCCCEEEEEe--CCc--EEEE
Q 001386 753 AS--N-GVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAYLFSAS--GGV--ISLY 824 (1088)
Q Consensus 753 ~~--d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~dg~~l~~~~--dg~--i~iw 824 (1088)
-. + ....+..+ |..++.+.........+--.......+. +++..++..+ +|- |.++
T Consensus 202 ~~nR~q~~~~l~~~----------------d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~ 265 (353)
T PF00930_consen 202 WLNRDQNRLDLVLC----------------DASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLY 265 (353)
T ss_dssp EEETTSTEEEEEEE----------------EECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred EcccCCCEEEEEEE----------------ECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEE
Confidence 32 2 22333222 2233332221111111112223355665 7776666655 554 7777
Q ss_pred EcCCceeEEEecCCCCCeEE-EEEcCCCCcEEEEEeCCC----eEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEE
Q 001386 825 IVMTFKTILTIMPPSPTATS-LAFNPHDNNVIAIGMDDS----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVS 899 (1088)
Q Consensus 825 d~~~~~~~~~~~~~~~~i~~-l~~sp~d~~~lasg~~dg----~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las 899 (1088)
+...+. ...+....-.|+. +.++++++.+..++..++ .++.-++.++..+..+....+.-..+.|||+|++++-
T Consensus 266 ~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 266 DLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVD 344 (353)
T ss_dssp ETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEE
T ss_pred cccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEE
Confidence 777665 3455555556744 678885555666776543 5666677723344555544333368999999999774
Q ss_pred E
Q 001386 900 S 900 (1088)
Q Consensus 900 ~ 900 (1088)
.
T Consensus 345 ~ 345 (353)
T PF00930_consen 345 T 345 (353)
T ss_dssp E
T ss_pred E
Confidence 3
No 330
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.29 E-value=0.0018 Score=68.73 Aligned_cols=278 Identities=13% Similarity=0.132 Sum_probs=138.2
Q ss_pred eeecCCCCeEEEEEcccC--cEEEEecCCCcceeeeceeeeeeccccccceeeeecCCC-CCeEEEEECCCCCEEEEEeC
Q 001386 340 MDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYS 416 (1088)
Q Consensus 340 v~~spdg~~lla~g~~dg--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~V~~l~~s~dg~~las~~~ 416 (1088)
=+|.+||++||.++..|| .+.+-|+.+++..+ |+... .......++|+++.++....
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~ 100 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKN 100 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEET
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEEC
Confidence 368999998888888776 46677778887654 33222 22334677899999887767
Q ss_pred CCEEEEEEccCCCcccceeEeccCCCCEEEEEec--CCCCcEEEEEEe----------------------CCCcEEEEeC
Q 001386 417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS--APCKQISVITCG----------------------DDKTIKVWDA 472 (1088)
Q Consensus 417 dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s--~d~~~l~l~s~s----------------------~d~~i~vwd~ 472 (1088)
...|+--|+.+.+.. . .+.....-+....|. .|+. .++..- ..+.|.--|+
T Consensus 101 ~~~l~~vdL~T~e~~-~--vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 101 GRSLRRVDLDTLEER-V--VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp TTEEEEEETTT--EE-E--EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred CCeEEEEECCcCcEE-E--EEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 778999999997632 2 233444445445553 4555 332221 1234555677
Q ss_pred CCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCe-----EEEEECCCCCc-eEEecCC--CCceEEEEEccCCCEE
Q 001386 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK-----IKAWLYDSLGA-RVDYDAP--GLGCTRMAYSANGRRL 544 (1088)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~-~~~~~~~--~~~v~~~~~s~~g~~l 544 (1088)
.+|+....+. -...+..+.|+|.. ..+++-+..|- -|||-+++... ...+..+ ...+..=-|.|||..|
T Consensus 176 ~tG~~~~v~~-~~~wlgH~~fsP~d--p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 176 KTGERKVVFE-DTDWLGHVQFSPTD--PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTI 252 (386)
T ss_dssp TT--EEEEEE-ESS-EEEEEEETTE--EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-E
T ss_pred CCCceeEEEe-cCccccCcccCCCC--CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEE
Confidence 8877544443 45566777776643 33444333331 36776654332 2222222 2234555689999988
Q ss_pred EEEee-CCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC----------------CcEEEEEc
Q 001386 545 FSCGT-SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----------------HVIKIWDM 607 (1088)
Q Consensus 545 ~~~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d----------------g~i~iwd~ 607 (1088)
...+. .+..+..|.-+|+.+++....... ....-+..++||+.++-=+.| --|+++++
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~ 327 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDTGERRRLMEM-----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDV 327 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT--EEEEEEE------SEEEEEE-TTSSEEEEEE-------------------EEEEEET
T ss_pred EEEeecCCCCceEEEeeCCCCCCceEEEeC-----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEecc
Confidence 87554 344466788899998866443222 123344556888877663322 14667888
Q ss_pred CCCeeeEEEeCC--------CCCCCCceEEEecCCCEEEEEeC-CCcEEEEe
Q 001386 608 NKVQLLTTIDAG--------GGLPENPRICFNKNGTLLAVIAN-ENRIKILE 650 (1088)
Q Consensus 608 ~~~~~~~~~~~~--------~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iwd 650 (1088)
..++........ .....-....|+|||+.++..++ .|...||-
T Consensus 328 ~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 328 EAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp TTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred ccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 876654322211 01112357899999998877665 56666554
No 331
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.28 E-value=0.0002 Score=79.37 Aligned_cols=280 Identities=12% Similarity=0.099 Sum_probs=160.7
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~ 415 (1088)
.|.--+++..++ +++.|+.-|.+.+|+-.+|+..... ..+-.+.+..+..|++..++|.|+
T Consensus 35 ~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~------------------~~~~~~~~~~~~vs~~e~lvAagt 95 (726)
T KOG3621|consen 35 RVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLK------------------NEGATGITCVRSVSSVEYLVAAGT 95 (726)
T ss_pred eEEEEEeecCCc-eEEEecccceEEEEecCchhhhccc------------------ccCccceEEEEEecchhHhhhhhc
Confidence 666667777788 6899999999999998888755320 233556777888999999999999
Q ss_pred CCCEEEEEEccCCCcccceeE---eccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC----ceeEEeccCCccE
Q 001386 416 SKHIVQLYAYHGGSDARQQLE---IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHGAPV 488 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~---~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~----~~~~~~~~~~~~v 488 (1088)
..|.|.++-+..+..-..... -..|...|++++|++|+. .+++|...|.|..-.+.+. ...+.+....+.|
T Consensus 96 ~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~I 173 (726)
T KOG3621|consen 96 ASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEI 173 (726)
T ss_pred CCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccCcce
Confidence 999999998887443222111 123678999999999999 7999999999998877762 1122333345666
Q ss_pred EEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCc--eEEEEEccC----CCEEEEEeeCCCCceeEEEEeC
Q 001386 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG--CTRMAYSAN----GRRLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~~~~s~~----g~~l~~~~~~~~~~~~i~iwd~ 562 (1088)
..+... ++.+|++. .-+. .+++.+.......-..+... -...+|-|. .+-.+.++..+ .++|..
T Consensus 174 VQlD~~---q~~LLVSt-l~r~-~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-----~RlWea 243 (726)
T KOG3621|consen 174 VQLDYL---QSYLLVST-LTRC-ILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-----LRLWEA 243 (726)
T ss_pred EEeecc---cceehHhh-hhhh-heeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-----CceEEe
Confidence 666542 22333333 2222 23444333221111111111 223344443 33444554433 678876
Q ss_pred C-CCceeEEEeccc---------------------------cccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeE
Q 001386 563 S-EGAIKRTYQGLQ---------------------------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 614 (1088)
Q Consensus 563 ~-~~~~~~~~~~~~---------------------------~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~ 614 (1088)
. .|+.+++..-.. .+-+-.. +. .-.+..+++-++-| |+|+|.++.+.+.
T Consensus 244 d~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k-~~-~l~~~~vLa~te~G-iyv~d~~~~~v~l 320 (726)
T KOG3621|consen 244 DFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSK-SS-TLHSDRVLAWTEVG-IYVFDSNNSQVYL 320 (726)
T ss_pred ecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccce-eE-EeecceEEEeecce-EEEEEeccceEEE
Confidence 5 344444332110 0000011 11 11223455555545 8888887655444
Q ss_pred EEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 001386 615 TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 615 ~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
-..... .|..+ +..++-|.+-..|+.+++..+.+.
T Consensus 321 ~se~~~---DI~dV--s~~~neiFvL~~d~~l~~~sv~s~ 355 (726)
T KOG3621|consen 321 WSEGGH---DILDV--SHCGNEIFVLNLDRGLKVESVASR 355 (726)
T ss_pred eecCCC---ceeEE--eecCceEEEEecCCceeEEEeehh
Confidence 332221 23333 344666777777777777766654
No 332
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=2.2e-05 Score=87.81 Aligned_cols=188 Identities=12% Similarity=0.126 Sum_probs=130.0
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 001386 840 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 919 (1088)
Q Consensus 840 ~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~ 919 (1088)
..++|++++ +++++-|+.+|.|++++... .. .....|+.. ..+|.+++|||.||+|.|-.+.+++....
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 456777885 47999999999999999763 33 333345554 56899999999999999999988653332
Q ss_pred eeeecCCCCccCCCCeEEEEEcCC-----CCEEEEEeCCeEEEEEcCcceee-eeeecCCCcCEEEEEEeeCCCEEEEEe
Q 001386 920 RSLQTPDGVMTLAPSETHIQFHKD-----QTRFLLVHETHLAIYEAEELTCL-KQWFPISSVPISQATFSCDCRMVFTSF 993 (1088)
Q Consensus 920 ~~~~~~~~~~~~~~~v~~~~fs~d-----g~~l~~~~d~~i~vwd~~~~~~~-~~~~~~h~~~v~~l~fs~dg~~l~s~s 993 (1088)
..++ .++.+++++|| .+.+++|+...+.++.-.-.... ........++|.++.|- |.++|=++
T Consensus 109 ~df~---------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan 177 (846)
T KOG2066|consen 109 YDFK---------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN 177 (846)
T ss_pred EecC---------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec
Confidence 2222 25889999998 56677755544777764321111 11122337889999985 66888776
Q ss_pred CCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001386 994 VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1057 (1088)
Q Consensus 994 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~ 1057 (1088)
.+| |+|||+.++..+..+.+....+. ....+..+.|.+ .+.|+.| ...+|.+..+.
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~~R----~e~fpphl~W~~--~~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQSVR----PELFPPHLHWQD--EDRLVIG-WGDSVKICSIK 233 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCCCC----cccCCCceEecC--CCeEEEe-cCCeEEEEEEe
Confidence 665 99999999999988875542221 234455688887 3556655 66688888887
No 333
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=6.8e-06 Score=83.42 Aligned_cols=118 Identities=19% Similarity=0.300 Sum_probs=97.4
Q ss_pred hHHHHHHHHHhhhhcCcHHHHHHHHHhcCCC--------hhHHHHHHHhcCccHHHHHHhhccC-ccccCccccchhhhH
Q 001386 5 NKDLVFLILQFLNEEGFTESAHMLERESRFY--------FDMKFFEDMILDGKWEDVEQYLSSF-TKVDDNRYSTKIYFE 75 (1088)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Es~~~--------~~~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~ 75 (1088)
+.-+-|+|+.||..+||..+|..|-++|.+. -++..++++|++|+...|+...+.- ..+. +....+-|.
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk--K~~S~lEf~ 192 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK--KEESSLEFQ 192 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccchhhhH
Confidence 3457899999999999999999999999985 2478899999999999998877542 1111 122237799
Q ss_pred HHHhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhccccc
Q 001386 76 IRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDI 124 (1088)
Q Consensus 76 l~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~ 124 (1088)
++.|.|+||+..+++.+|+.+.++++.|......+.++....++.++..
T Consensus 193 lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~ 241 (389)
T KOG0396|consen 193 LRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKY 241 (389)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccc
Confidence 9999999999999999999999999999987677888888888887544
No 334
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.26 E-value=2.3e-06 Score=85.45 Aligned_cols=134 Identities=16% Similarity=0.225 Sum_probs=102.6
Q ss_pred CCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-CCCEE
Q 001386 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL 411 (1088)
Q Consensus 333 h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~-dg~~l 411 (1088)
.++.|.+++|...+. ++..|..+|.|...|+..+..=. .| |. .---|...|+++..-. ++.+|
T Consensus 251 sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~-----~~----~a------~rlyh~Ssvtslq~Lq~s~q~L 314 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGN-----GW----CA------QRLYHDSSVTSLQILQFSQQKL 314 (425)
T ss_pred cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCC-----Cc----ce------EEEEcCcchhhhhhhccccceE
Confidence 456899999999887 89999999999999998762110 00 00 0122889999998877 88999
Q ss_pred EEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEe--cCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccC
Q 001386 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF--SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1088)
Q Consensus 412 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~--s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 484 (1088)
.+.+.+|+|++||..--++.+....+.||...-..+-+ .+... .+++++.|...+||.++.|..+.++...
T Consensus 315 maS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg--~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 315 MASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG--SIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred eeccCcCceeEeeehhhhcccceeeeecccccccccccccccccc--eEEEccCeeEEEEEecccCceeeccCCC
Confidence 99999999999999876664455578899765444443 33344 7888999999999999999999887643
No 335
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.23 E-value=0.00065 Score=78.46 Aligned_cols=248 Identities=10% Similarity=0.106 Sum_probs=142.1
Q ss_pred CEEEEE-eCCcEEEEEcCCceeEEEecCCCCC-----e-EEEEEcCCCCcEEEEEe---------CCCeEEEEEcCCcee
Q 001386 811 AYLFSA-SGGVISLYIVMTFKTILTIMPPSPT-----A-TSLAFNPHDNNVIAIGM---------DDSTILIYNARSSEV 874 (1088)
Q Consensus 811 ~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~-----i-~~l~~sp~d~~~lasg~---------~dg~i~lwd~~~~~~ 874 (1088)
..++.+ .++.|.-+|.++|+.+..+...... + .+..+. ++ +++.++ .+|.++-+|..+|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KK-LVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CC-EEEEeccccccccCCCCcEEEEEECCCCce
Confidence 344444 4899999999999999887644321 1 122333 23 454554 368899999999998
Q ss_pred eeeeccccC--------------------Ce-eEEEECCCCCEEEEEeCCC------------------cEEEEEcCCCc
Q 001386 875 ISKLEGHSK--------------------RV-TGLVFSDALNILVSSGGDA------------------QIFVWDVDGWG 915 (1088)
Q Consensus 875 ~~~l~~h~~--------------------~V-~~l~~s~dg~~las~s~Dg------------------~i~iwd~~~~~ 915 (1088)
+..+..... .| ...++.+.+..++.++.++ .|.-.|.++++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 877654211 01 1234445566777776665 68888998887
Q ss_pred eeeeeeeecCCCC--ccCCCC-eEEEEEcCCCC---EEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCE
Q 001386 916 IQTCRSLQTPDGV--MTLAPS-ETHIQFHKDQT---RFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM 988 (1088)
Q Consensus 916 ~~~~~~~~~~~~~--~~~~~~-v~~~~fs~dg~---~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~ 988 (1088)
..=.......... .....+ +..+. .-+|. .+++ +.+|.+...|..+|+.+...... ...++.+| ..
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~--~~ 340 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP--GL 340 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC--ce
Confidence 4422111111000 000000 11111 12343 3444 46889999999999988764322 11233333 23
Q ss_pred EEEE------------------eCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCc
Q 001386 989 VFTS------------------FVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGE 1050 (1088)
Q Consensus 989 l~s~------------------s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~ 1050 (1088)
++.+ ..+|.+.-.|+.+|+.+.+...........-+.......++. .+..+++++.||.
T Consensus 341 vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~ 417 (488)
T cd00216 341 VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGY 417 (488)
T ss_pred EEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCe
Confidence 3332 236788889999999887766331110000000011111222 3478889999999
Q ss_pred EEEEeCCCCCCCccccCCCCc
Q 001386 1051 VYVIEPNEPGDTWAVLPPDEI 1071 (1088)
Q Consensus 1051 v~~w~l~~~~~~~~~~~~~~~ 1071 (1088)
|+.+|....+..|...-+...
T Consensus 418 l~ald~~tG~~lW~~~~~~~~ 438 (488)
T cd00216 418 FRAFDATTGKELWKFRTPSGI 438 (488)
T ss_pred EEEEECCCCceeeEEECCCCc
Confidence 999999999999987654433
No 336
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=0.00011 Score=82.97 Aligned_cols=207 Identities=15% Similarity=0.176 Sum_probs=133.5
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCC-eeEEEECCCCCEEEEEeCCCc-----EEEEEcCCCceee-
Q 001386 846 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVSSGGDAQ-----IFVWDVDGWGIQT- 918 (1088)
Q Consensus 846 ~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~-V~~l~~s~dg~~las~s~Dg~-----i~iwd~~~~~~~~- 918 (1088)
+|++ ++..+|.|+.+|.|.+.+ ++-+.+..++++... |..+-...+..+|++.+.|+. |+||+++.-+...
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4566 677999999999998887 335556788887777 444444444478999888764 8999998753222
Q ss_pred eeee---ecCC-CCccCCCCeEEEEEcCCCCEEEEE-eCCeEEEEEcC--cceeeeeee-cCCCcCEEEEEEeeCCCEEE
Q 001386 919 CRSL---QTPD-GVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAE--ELTCLKQWF-PISSVPISQATFSCDCRMVF 990 (1088)
Q Consensus 919 ~~~~---~~~~-~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~vwd~~--~~~~~~~~~-~~h~~~v~~l~fs~dg~~l~ 990 (1088)
..++ .... .......++.+++.+.+-+.+|+| .+|.|..+.-+ ..+-.+... ..-..+|+.++|-.|++.++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 2333 2221 111123578999999999999998 67888887532 112122211 11278999999999998855
Q ss_pred EEeCCCcEEEEEcCCCce-EEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCCcccc
Q 001386 991 TSFVDGTLSIHEASNLEV-QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVL 1066 (1088)
Q Consensus 991 s~s~dg~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~~~~~~~ 1066 (1088)
.+.+-..|.+|.+..... .+... . .++...|.+|++.. ..|++| .+..|.+|+....++-|+..
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld-----~-----~G~~lnCss~~~~t-~qfIca-~~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLD-----N-----NGISLNCSSFSDGT-YQFICA-GSEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred EEEecceeEEEEecCCCcceeeec-----c-----CCccceeeecCCCC-ccEEEe-cCceEEEEcCCCcceeeeec
Confidence 555666899999984431 11111 1 12445677788622 235544 46788999998877666544
No 337
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=0.00012 Score=75.30 Aligned_cols=249 Identities=13% Similarity=0.103 Sum_probs=141.6
Q ss_pred eecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
+.|.+|..-|..++|||...-|+..++.+..|.|.|+.+...+.. +..| ..+++++|.-|
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-------------------y~a~-~~~wSC~wDld 246 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-------------------YIAY-NQIWSCCWDLD 246 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------eecc-CCceeeeeccC
Confidence 467788889999999998876889999999999999999877654 2334 78999999986
Q ss_pred CC-EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecC------CCCcEEEEEEeCCCcEEEEeCCC--Ccee
Q 001386 408 GS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA------PCKQISVITCGDDKTIKVWDAVT--GSRT 478 (1088)
Q Consensus 408 g~-~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~------d~~~l~l~s~s~d~~i~vwd~~~--~~~~ 478 (1088)
.. +|..|..+|.|.|||+...+.......-.-...+|..++.-+ -|. +++..+.+ +..|++.- +...
T Consensus 247 e~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg--lLv~~lt~--l~f~ei~~s~~~~p 322 (463)
T KOG1645|consen 247 ERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG--LLVFALTV--LQFYEIVFSAECLP 322 (463)
T ss_pred CcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc--eEEeeehh--hhhhhhhccccCCC
Confidence 54 566677889999999986653322111111223455544333 233 34444333 55676442 2222
Q ss_pred EEec-cCCccEEEEeeeeeCCceEEEEEecCCe------EEE-EECCCCCceEEec-CC-CC------ceEEEEEccCCC
Q 001386 479 YSFE-GHGAPVYSLCPHAKENIHFIFSISVDGK------IKA-WLYDSLGARVDYD-AP-GL------GCTRMAYSANGR 542 (1088)
Q Consensus 479 ~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~------i~i-wd~~~~~~~~~~~-~~-~~------~v~~~~~s~~g~ 542 (1088)
..++ +..+...++..++..+ ..|++.-.+.. |-. -|...+..+.... .+ +. .-..+.-.++.+
T Consensus 323 ~vlele~pG~cismqy~~~sn-h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn 401 (463)
T KOG1645|consen 323 CVLELEPPGICISMQYHGVSN-HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNN 401 (463)
T ss_pred cccccCCCcceeeeeecCccc-eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceecccccc
Confidence 2222 1244555555544322 34444332110 000 0111111111000 00 00 011222345666
Q ss_pred EEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEe-CCCCEEEEEeCCCcEEEEEcC
Q 001386 543 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDDHVIKIWDMN 608 (1088)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~dg~i~iwd~~ 608 (1088)
+++..+. ....+.+||+.+++.++++.... +|..++.. -++.-++..-.|..++||..+
T Consensus 402 ~iv~~gd---~tn~lil~D~~s~evvQ~l~~~e----pv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 402 YIVVVGD---STNELILQDPHSFEVVQTLALSE----PVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred EEEEecC---CcceeEEeccchhheeeecccCc----ceeecceeecCCcchhhheecceEEEEecC
Confidence 6666543 36679999999999999988654 67666653 334444444456677887654
No 338
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.15 E-value=3.5e-05 Score=87.17 Aligned_cols=186 Identities=14% Similarity=0.117 Sum_probs=141.9
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEE
Q 001386 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1088)
Q Consensus 457 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 536 (1088)
.++.|+....+..+|+.+++..+......+.|.-++. +++++.+|...|+|.+-|.++.+.+.++..|.+.+. .
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS--D 222 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS--D 222 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeecccccee--e
Confidence 4677888888889999999888777655656766653 668999999999999999999999999999998885 5
Q ss_pred EccCCCEEEEEeeCCC-----CceeEEEEeCCCCceeEEEeccccccccEEEEEEeCC-CCEEEEEeCCCcEEEEEcCC-
Q 001386 537 YSANGRRLFSCGTSKE-----GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNK- 609 (1088)
Q Consensus 537 ~s~~g~~l~~~~~~~~-----~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~- 609 (1088)
|+-.|+.|++||.+.. .+..|.+||++..+.+..+.-+. ++ .-+.|+|. ...+++++..|...+-|..+
T Consensus 223 fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~---~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~l 298 (1118)
T KOG1275|consen 223 FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY---GP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATL 298 (1118)
T ss_pred eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc---Cc-hhhhhcccccceEEEEecccceeecccccc
Confidence 6678999999987653 25678999999887766665544 22 44567775 45778888999999988332
Q ss_pred Cee-eEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCC
Q 001386 610 VQL-LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 610 ~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
+.+ ......+.....+..+.++++|..++.|..+|.|.+|.-.
T Consensus 299 sNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 299 SNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred CCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 222 2222222223358899999999999999999999999843
No 339
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.00021 Score=80.30 Aligned_cols=186 Identities=13% Similarity=0.135 Sum_probs=125.2
Q ss_pred cEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEE
Q 001386 736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 815 (1088)
Q Consensus 736 ~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 815 (1088)
.+.+++++ +++++.|+.+|.+++++.+.... +. + .|... ..+|.++++
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~--------------~~-------~---~~s~~------~~~Gey~as 88 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNPK--------------TN-------F---DHSSS------ILEGEYVAS 88 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCccc--------------cc-------c---ccccc------ccCCceEEE
Confidence 44555554 66789999999999988654311 00 0 02111 558999999
Q ss_pred Ee-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCC----CCcEEEEEeCCCeEEEEEcCC--ceeeeeeccccCCeeEE
Q 001386 816 AS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH----DNNVIAIGMDDSTILIYNARS--SEVISKLEGHSKRVTGL 888 (1088)
Q Consensus 816 ~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~----d~~~lasg~~dg~i~lwd~~~--~~~~~~l~~h~~~V~~l 888 (1088)
++ ||+|.|..+.+.+...++. ...++.+++++|+ ..+.+++|+..| +.++.-.= .+.-..+..-.|+|.++
T Consensus 89 CS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i 166 (846)
T KOG2066|consen 89 CSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSI 166 (846)
T ss_pred ecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEE
Confidence 98 8999999998888777665 5578999999993 256888999998 77775321 11112455567899999
Q ss_pred EECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcC
Q 001386 889 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 961 (1088)
Q Consensus 889 ~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~ 961 (1088)
.|. |.++|-++.+| |++||+.+++..... +.+...........++.|.++. .|+.|...+|++..++
T Consensus 167 ~W~--g~lIAWand~G-v~vyd~~~~~~l~~i--~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 167 KWR--GNLIAWANDDG-VKVYDTPTRQRLTNI--PPPSQSVRPELFPPHLHWQDED-RLVIGWGDSVKICSIK 233 (846)
T ss_pred Eec--CcEEEEecCCC-cEEEeccccceeecc--CCCCCCCCcccCCCceEecCCC-eEEEecCCeEEEEEEe
Confidence 995 88999888888 899999986543321 1111111111233466776654 4667777788888877
No 340
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.00078 Score=76.43 Aligned_cols=203 Identities=12% Similarity=0.132 Sum_probs=130.5
Q ss_pred eecCCCCeEEEEEcccCcEEEEecCCCcce-eeeceeeeeeccccccceeeeecCCCCC-eEEEEECCCCCEEEEEeCCC
Q 001386 341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVS-VNRVVWSPDGSLLGVAYSKH 418 (1088)
Q Consensus 341 ~~spdg~~lla~g~~dg~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~h~~~-V~~l~~s~dg~~las~~~dg 418 (1088)
+|++.+. .+|.|+.+|.|.+.+ ++..+ +. +..+... |..+-...+..+|++.+.|+
T Consensus 30 c~~s~~~-~vvigt~~G~V~~Ln--~s~~~~~~-------------------fqa~~~siv~~L~~~~~~~~L~sv~Ed~ 87 (933)
T KOG2114|consen 30 CCSSSTG-SVVIGTADGRVVILN--SSFQLIRG-------------------FQAYEQSIVQFLYILNKQNFLFSVGEDE 87 (933)
T ss_pred EEcCCCc-eEEEeeccccEEEec--ccceeeeh-------------------heecchhhhhHhhcccCceEEEEEeecC
Confidence 4667777 689999999887776 32222 21 3334444 44444444446777776554
Q ss_pred -----EEEEEEccCCC------cccceeEecc-----CCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe--CC--CCcee
Q 001386 419 -----IVQLYAYHGGS------DARQQLEIDA-----HVGNVNDLAFSAPCKQISVITCGDDKTIKVWD--AV--TGSRT 478 (1088)
Q Consensus 419 -----~i~vwd~~~~~------~~~~~~~~~~-----h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd--~~--~~~~~ 478 (1088)
.++||+++.-+ ++... .+.. ...++.+++.+.+-+ .+|.|-.+|.|..+. +. .|...
T Consensus 88 ~~np~llkiw~lek~~~n~sP~c~~~~-ri~~~~np~~~~p~s~l~Vs~~l~--~Iv~Gf~nG~V~~~~GDi~RDrgsr~ 164 (933)
T KOG2114|consen 88 QGNPVLLKIWDLEKVDKNNSPQCLYEH-RIFTIKNPTNPSPASSLAVSEDLK--TIVCGFTNGLVICYKGDILRDRGSRQ 164 (933)
T ss_pred CCCceEEEEecccccCCCCCcceeeee-eeeccCCCCCCCcceEEEEEcccc--EEEEEecCcEEEEEcCcchhccccce
Confidence 59999997432 12111 1112 356789999999977 789999999998874 22 22222
Q ss_pred EEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc-eEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeE
Q 001386 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1088)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i 557 (1088)
.-......+|+.+++.. ++..++.......|.+|.+..... ...+..++....|.+|++....+++++ ...+
T Consensus 165 ~~~~~~~~pITgL~~~~--d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-----~e~l 237 (933)
T KOG2114|consen 165 DYSHRGKEPITGLALRS--DGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-----SEFL 237 (933)
T ss_pred eeeccCCCCceeeEEec--CCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-----CceE
Confidence 22233567999999854 445544455567899999986553 334777888899999988777566665 3459
Q ss_pred EEEeCCCCceeEEEe-ccc
Q 001386 558 VEWNESEGAIKRTYQ-GLQ 575 (1088)
Q Consensus 558 ~iwd~~~~~~~~~~~-~~~ 575 (1088)
+.|+......-..+. |+.
T Consensus 238 ~fY~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 238 YFYDSDGRGPCFAFEVGEK 256 (933)
T ss_pred EEEcCCCcceeeeecCCCe
Confidence 999988666655555 444
No 341
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.08 E-value=0.0022 Score=70.49 Aligned_cols=113 Identities=16% Similarity=0.131 Sum_probs=82.5
Q ss_pred eEEEEEcC-CCCEEEEE-----eCC----eEEEEEcCccee--eeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEE
Q 001386 935 ETHIQFHK-DQTRFLLV-----HET----HLAIYEAEELTC--LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1002 (1088)
Q Consensus 935 v~~~~fs~-dg~~l~~~-----~d~----~i~vwd~~~~~~--~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd 1002 (1088)
..++.||- +...+.+. .+| .-.+|++...+. +..........|.+++++|+...|+.|+.||+|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 46778876 34444441 233 256777765543 3333345588999999999999999999999999999
Q ss_pred cCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 1003 ASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 1003 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~ 1060 (1088)
..++.....- ..+.|..++||| +|..+++|+.-|.+.+||+.-+.
T Consensus 288 ~~~~~t~~~k------------a~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 288 TTRGVTLLAK------------AEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred cCCCeeeeee------------ecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCc
Confidence 9888543221 124567799999 89999999999999999995444
No 342
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.07 E-value=0.0054 Score=69.98 Aligned_cols=252 Identities=14% Similarity=0.088 Sum_probs=139.1
Q ss_pred CceeeeecCCCCeEEEEEcccC----cEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEE
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 411 (1088)
.+...++||||++++.+-+..| +++|.|+.+|+.+... +.. ..-..++|.+|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~------------------i~~--~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG------------------IEN--PKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE------------------EEE--EESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc------------------ccc--cccceEEEeCCCCEE
Confidence 4446789999996555545444 5999999999766421 111 112239999999888
Q ss_pred EEEeCCC-----------EEEEEEccCCCcccceeEeccCCCC--EEEEEecCCCCcEEEEEEeCC--CcEEEEeCCCC-
Q 001386 412 GVAYSKH-----------IVQLYAYHGGSDARQQLEIDAHVGN--VNDLAFSAPCKQISVITCGDD--KTIKVWDAVTG- 475 (1088)
Q Consensus 412 as~~~dg-----------~i~vwd~~~~~~~~~~~~~~~h~~~--v~~~~~s~d~~~l~l~s~s~d--~~i~vwd~~~~- 475 (1088)
.....+. .|+.|.+.++..-. ...+...... ...+..++|++.+++.+.+.. ..+.+.|+..+
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence 7664332 37788887664321 1234343333 678899999996433333322 35778888775
Q ss_pred ---ceeEEeccCCccEEEEeeeeeCCceEEEEE---ecCCeEEEEECCCCCc---eEEecCCCCceEEEEEccCCCEEEE
Q 001386 476 ---SRTYSFEGHGAPVYSLCPHAKENIHFIFSI---SVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLFS 546 (1088)
Q Consensus 476 ---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~---~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~~ 546 (1088)
.....+......+....-+. ++.+++.. ...+.|...++..... ...+..+...+.-..+...+.+|+.
T Consensus 264 ~~~~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl 341 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVL 341 (414)
T ss_dssp TSS-SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEE
T ss_pred CCcCCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEE
Confidence 23334433333333322221 33344433 2345677778777663 2244444443333444455666666
Q ss_pred EeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEE--e--CCCcEEEEEcCCCeee
Q 001386 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA--G--DDHVIKIWDMNKVQLL 613 (1088)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--s--~dg~i~iwd~~~~~~~ 613 (1088)
... .++...|++++...+.....+.... .+.|..+...++++.+... | .-+++..||+.+++..
T Consensus 342 ~~~-~~~~~~l~v~~~~~~~~~~~~~~p~--~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 342 SYR-ENGSSRLRVYDLDDGKESREIPLPE--AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEE-ETTEEEEEEEETT-TEEEEEEESSS--SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEE-ECCccEEEEEECCCCcEEeeecCCc--ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 554 3457789999998455555555443 3556666666666655442 2 3467888888887654
No 343
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.03 E-value=0.001 Score=77.20 Aligned_cols=222 Identities=14% Similarity=0.099 Sum_probs=120.3
Q ss_pred CCeEEEEEcCCCCcEEEEEe------CCC--eEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCC-CcEEEEE
Q 001386 840 PTATSLAFNPHDNNVIAIGM------DDS--TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFVWD 910 (1088)
Q Consensus 840 ~~i~~l~~sp~d~~~lasg~------~dg--~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~D-g~i~iwd 910 (1088)
..+...++|| +++.+|... .|. .+.+++.. +.......+. ..+.-.|+|||+.|++.+.. ..+++.+
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4678899999 677666554 243 55555642 3332223332 37889999999988887543 2233332
Q ss_pred cCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEE---EEcCccee-e---eeeecCCCcCEEEEEEe
Q 001386 911 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI---YEAEELTC-L---KQWFPISSVPISQATFS 983 (1088)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~v---wd~~~~~~-~---~~~~~~h~~~v~~l~fs 983 (1088)
-..........+............|..+.|||||..+|...+++|++ -....|+. + ..+..+-...+.++.|.
T Consensus 426 ~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~ 505 (591)
T PRK13616 426 DPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR 505 (591)
T ss_pred cCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence 21111000000000000001123699999999999999977788887 55555641 1 11122223446889999
Q ss_pred eCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCCc
Q 001386 984 CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1063 (1088)
Q Consensus 984 ~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~~~~ 1063 (1088)
.++.++ ++..++...+|.+.-.-......+...+. -...+++-.| ..++++..+|.+.+=.-......|
T Consensus 506 ~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~-------~~v~~vaa~~---~~iyv~~~~g~~~l~~~~~~~~~W 574 (591)
T PRK13616 506 TGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLS-------APVVAVAASP---STVYVTDARAVLQLPNSDSGDQYW 574 (591)
T ss_pred cCCEEE-EEecCCCCceEEEecCCccccccCCCCcc-------CceEEEecCC---ceEEEEcCCceEEecCCCCCCCCc
Confidence 999855 55555555566543332111111111111 1124566665 356666777744443334456789
Q ss_pred cccCCCCccCCCC
Q 001386 1064 AVLPPDEIVGDQP 1076 (1088)
Q Consensus 1064 ~~~~~~~~~~~~~ 1076 (1088)
..-+......+.|
T Consensus 575 ~ev~~l~g~~~~p 587 (591)
T PRK13616 575 REVPGLMGPRAAP 587 (591)
T ss_pred eECccccCCCccc
Confidence 8888777665544
No 344
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=98.03 E-value=3.3e-06 Score=64.76 Aligned_cols=53 Identities=34% Similarity=0.595 Sum_probs=43.0
Q ss_pred hHHHHHHHhcCccHHHHHHhhccCccccCccccchhhhHHHHhhhhhhhcCCCH
Q 001386 37 DMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDI 90 (1088)
Q Consensus 37 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~ 90 (1088)
++..++++|+.|+|+.|++.+...........+ .+.|.|++|+|+||++.++.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 478899999999999999999887443222223 49999999999999998764
No 345
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.03 E-value=7.8e-06 Score=49.94 Aligned_cols=27 Identities=33% Similarity=0.642 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhhhcCcHHHHHHHHHhc
Q 001386 6 KDLVFLILQFLNEEGFTESAHMLERES 32 (1088)
Q Consensus 6 ~~~~~li~q~L~~~g~~~s~~~L~~Es 32 (1088)
+++.+||++||.+.||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 579999999999999999999999997
No 346
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.00 E-value=0.00047 Score=76.57 Aligned_cols=197 Identities=19% Similarity=0.147 Sum_probs=119.5
Q ss_pred hhheeecccCCCCceeeeecCCCCeEEEEEccc---CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV---GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~d---g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~ 400 (1088)
....+.+..-...+..-+|+|+++.+....-.. ..+.++|+.+++.....+ ..+.-.
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--------------------~~g~~~ 241 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--------------------FNGNNG 241 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--------------------cCCccC
Confidence 444556666666888889999999654443222 359999999987665322 234445
Q ss_pred EEEECCCCCEEEEEe-CCCE--EEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCc--EEEEeCCCC
Q 001386 401 RVVWSPDGSLLGVAY-SKHI--VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTG 475 (1088)
Q Consensus 401 ~l~~s~dg~~las~~-~dg~--i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~--i~vwd~~~~ 475 (1088)
..+|||||++||.+. .||. |.+.|+.++... .+..-.+.-+.=.|+|||+. ++.+.+..|. |.+.|++.+
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~----~Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP----RLTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCcce----ecccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCC
Confidence 578999999998774 4454 777788776522 23333333446789999997 3444555554 556676665
Q ss_pred ceeEEeccCCccEEEEeeeeeCCceEEEEEecC-Ce--EEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEee
Q 001386 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1088)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 549 (1088)
... .+....+.-. ...+++||++++..+.. |. |.+.|+.+..... ...........++.++|+.+...+.
T Consensus 317 ~~~-riT~~~~~~~--~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~-~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 317 QVT-RLTFSGGGNS--NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIR-ILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred cee-EeeccCCCCc--CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEE-EccccccCCCCCcCCCCceEEEecc
Confidence 543 2222211111 23336788888877653 44 5566665555322 2222223345578889988887664
No 347
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.95 E-value=0.0044 Score=71.64 Aligned_cols=249 Identities=13% Similarity=0.103 Sum_probs=140.3
Q ss_pred EEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC--CCCEEEEEe---------CC
Q 001386 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGVAY---------SK 417 (1088)
Q Consensus 349 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~--dg~~las~~---------~d 417 (1088)
.+..++.++.|.-+|..+|+.+-.... ..+...-..+.-+| .+..++.++ .+
T Consensus 112 ~V~v~~~~g~v~AlD~~TG~~~W~~~~-----------------~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~ 174 (488)
T cd00216 112 KVFFGTFDGRLVALDAETGKQVWKFGN-----------------NDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVR 174 (488)
T ss_pred eEEEecCCCeEEEEECCCCCEeeeecC-----------------CCCcCcceEecCCCEEECCEEEEeccccccccCCCC
Confidence 356777889999999999997754221 11100000011111 124444443 36
Q ss_pred CEEEEEEccCCCcccceeEecc----------------CC-CCE-EEEEecCCCCcEEEEEEeCCC--------------
Q 001386 418 HIVQLYAYHGGSDARQQLEIDA----------------HV-GNV-NDLAFSAPCKQISVITCGDDK-------------- 465 (1088)
Q Consensus 418 g~i~vwd~~~~~~~~~~~~~~~----------------h~-~~v-~~~~~s~d~~~l~l~s~s~d~-------------- 465 (1088)
+.+.-.|..+|+.+-....... +. ..| ...++.+.+. .++.++.++
T Consensus 175 g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g--~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 175 GALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN--LVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred cEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC--EEEEECCCCCCCccCCccCCCCC
Confidence 7888889998876543211100 00 011 1234444445 455565454
Q ss_pred ----cEEEEeCCCCceeEEeccCCccEE------EEeeee--eCCc---eEEEEEecCCeEEEEECCCCCceEEecCCCC
Q 001386 466 ----TIKVWDAVTGSRTYSFEGHGAPVY------SLCPHA--KENI---HFIFSISVDGKIKAWLYDSLGARVDYDAPGL 530 (1088)
Q Consensus 466 ----~i~vwd~~~~~~~~~~~~~~~~v~------~~~~~~--~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 530 (1088)
.|.-.|+.+|+.+..+..-..... ...+.. .-++ ..++.++.+|.+...|.++++.+.......
T Consensus 253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~- 331 (488)
T cd00216 253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE- 331 (488)
T ss_pred CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec-
Confidence 799999999999877642111110 001100 0122 267888899999999999998877654321
Q ss_pred ceEEEEEccCCCEEEEEeeC--------------CCCceeEEEEeCCCCceeEEEecccccc-----ccEEEEEEeCCCC
Q 001386 531 GCTRMAYSANGRRLFSCGTS--------------KEGESFLVEWNESEGAIKRTYQGLQLQH-----NSVSVVHFDTAKD 591 (1088)
Q Consensus 531 ~v~~~~~s~~g~~l~~~~~~--------------~~~~~~i~iwd~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~ 591 (1088)
..++.+| ..++..... ....+.+.-.|..+|+.+-......... .....-.....+.
T Consensus 332 --~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~ 407 (488)
T cd00216 332 --QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGN 407 (488)
T ss_pred --cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCC
Confidence 1233444 333332210 1225678889999998776665431000 0111111122467
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeEEEeCCCC
Q 001386 592 QILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621 (1088)
Q Consensus 592 ~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1088)
.+++++.||.|+.+|..+|+.+...+....
T Consensus 408 ~v~~g~~dG~l~ald~~tG~~lW~~~~~~~ 437 (488)
T cd00216 408 LVFAGAADGYFRAFDATTGKELWKFRTPSG 437 (488)
T ss_pred eEEEECCCCeEEEEECCCCceeeEEECCCC
Confidence 888999999999999999999999876543
No 348
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.93 E-value=0.0033 Score=63.96 Aligned_cols=215 Identities=12% Similarity=0.116 Sum_probs=115.4
Q ss_pred EecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccc-cCCeeEEEECCCCCEEEEEeCCCcEEEEEcC
Q 001386 834 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVFSDALNILVSSGGDAQIFVWDVD 912 (1088)
Q Consensus 834 ~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h-~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~ 912 (1088)
.+.+-...+..++|.|+++.++++....+.|..++.. |+.+.++.-. .+..-.|++..++.++++.-.++.+.+.++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4555566799999999667788889999999999974 7877766433 3568899999888887776678999999994
Q ss_pred CCc--eeee--eeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCC-eEEEEEcCc---ceeeee-e------ecCCCcCE
Q 001386 913 GWG--IQTC--RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET-HLAIYEAEE---LTCLKQ-W------FPISSVPI 977 (1088)
Q Consensus 913 ~~~--~~~~--~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~-~i~vwd~~~---~~~~~~-~------~~~h~~~v 977 (1088)
... .... ..+..... ......+-.++|++.++.|.++.++ -..+|.+.. ...+.. . .......+
T Consensus 95 ~~~~~~~~~~~~~~~l~~~-~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFP-NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ---TT--EEEEEEEE---S----SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred ccccccchhhceEEecccc-cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 422 1111 11121111 1122368999999988777776443 345555543 111111 0 11124567
Q ss_pred EEEEEeeCC-CEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEE
Q 001386 978 SQATFSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1054 (1088)
Q Consensus 978 ~~l~fs~dg-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w 1054 (1088)
.++++.|.. .+++.......|.++| ..|+.+..+........- ...--.+-.|+|+| +|++.++. .-+..++|
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl-~~~~~QpEGIa~d~-~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGL-SKDIPQPEGIAFDP-DGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG--SS---SEEEEEE-T-T--EEEEE-TTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCc-ccccCCccEEEECC-CCCEEEEc-CCceEEEe
Confidence 889998855 4556666778888899 778777665533311100 00111245699999 77765544 55555554
No 349
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.93 E-value=0.00063 Score=74.59 Aligned_cols=114 Identities=14% Similarity=0.189 Sum_probs=82.3
Q ss_pred CCCeeEEEEec-CCCEEEEEe-----CCc----EEEEEcCCceeEEE---ecCCCCCeEEEEEcCCCCcEEEEEeCCCeE
Q 001386 798 QEAVPCFALSK-NDAYLFSAS-----GGV----ISLYIVMTFKTILT---IMPPSPTATSLAFNPHDNNVIAIGMDDSTI 864 (1088)
Q Consensus 798 ~~~v~~~~~s~-dg~~l~~~~-----dg~----i~iwd~~~~~~~~~---~~~~~~~i~~l~~sp~d~~~lasg~~dg~i 864 (1088)
+....++.||. +...+.+.. +|. -.+|++...+..+. --.....+.+++++| +...++.|+.||+|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI 283 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence 34456777776 333343331 332 46777765543221 124667899999999 88999999999999
Q ss_pred EEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 001386 865 LIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 914 (1088)
Q Consensus 865 ~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~ 914 (1088)
.+||...+... +..+.-.++.++|+|+|.++++|+..|.+.+||+.-.
T Consensus 284 iLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 284 ILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 99998876332 2234456788999999999999999999999998753
No 350
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.92 E-value=0.0034 Score=63.88 Aligned_cols=197 Identities=9% Similarity=0.086 Sum_probs=113.3
Q ss_pred eecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
+.|.+-.+++..++|.|+...|+|+....+.|...+. +|+.++..+ +.+ -+..-.|++..+
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~-----------------l~g-~~D~EgI~y~g~ 75 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIP-----------------LDG-FGDYEGITYLGN 75 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE------------------SS--SSEEEEEE-ST
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEe-----------------CCC-CCCceeEEEECC
Confidence 4566777789999999998779999999999998886 577776533 333 356888999888
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccce---e--Eec---cCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC---Cc
Q 001386 408 GSLLGVAYSKHIVQLYAYHGGSDARQQ---L--EID---AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GS 476 (1088)
Q Consensus 408 g~~las~~~dg~i~vwd~~~~~~~~~~---~--~~~---~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~---~~ 476 (1088)
+.++++.-.++.+.+.++......... . .+. .+...+-.++|.+.++. |+.+-...-..++.+.. +.
T Consensus 76 ~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~ 153 (248)
T PF06977_consen 76 GRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGF 153 (248)
T ss_dssp TEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS
T ss_pred CEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCcc
Confidence 888877667899999998543211111 1 111 24456899999999884 44455555556665443 22
Q ss_pred eeEEe--------ccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCC---------CceEEEEEcc
Q 001386 477 RTYSF--------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------LGCTRMAYSA 539 (1088)
Q Consensus 477 ~~~~~--------~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~s~ 539 (1088)
.+... ......+.++++++. .+++++.......|..+| ..++.+..+.... .....|+|.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~ 231 (248)
T PF06977_consen 154 DLFVSDDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP 231 (248)
T ss_dssp --EEEE-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T
T ss_pred ceeeccccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC
Confidence 22111 123455788888765 567888888889999998 4444433332222 2467899999
Q ss_pred CCCEEEEE
Q 001386 540 NGRRLFSC 547 (1088)
Q Consensus 540 ~g~~l~~~ 547 (1088)
+|+..++.
T Consensus 232 ~G~LYIvs 239 (248)
T PF06977_consen 232 DGNLYIVS 239 (248)
T ss_dssp T--EEEEE
T ss_pred CCCEEEEc
Confidence 99766664
No 351
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.91 E-value=0.0026 Score=70.01 Aligned_cols=282 Identities=13% Similarity=0.152 Sum_probs=146.4
Q ss_pred cEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEE
Q 001386 736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 815 (1088)
Q Consensus 736 ~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 815 (1088)
.|+.+.|+++..-++++...|.|.+|.+..++...... ...-....+.+ +.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~------------------------~~~~~~~~~~~-----~~ 53 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNRE------------------------QPPDLDYNFRR-----FS 53 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------------------------------S-------
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccC------------------------CCcccCccccc-----cc
Confidence 57889999998889999999999999987654311000 00000000000 00
Q ss_pred EeCCcEEEEEcCC---------ceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeee--ecc----
Q 001386 816 ASGGVISLYIVMT---------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--LEG---- 880 (1088)
Q Consensus 816 ~~dg~i~iwd~~~---------~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~--l~~---- 880 (1088)
..++.-.+-|+.. ......+....+.|++++.|. =-++|+|..+|.+.|.|++....+.. +..
T Consensus 54 ~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~--iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~ 131 (395)
T PF08596_consen 54 LNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSD--IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLS 131 (395)
T ss_dssp GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-B--TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-
T ss_pred ccCCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCC--CcEEEEEecCCcEEEEECCCCeEEeeccccccccc
Confidence 0001111122211 122333444578999999984 45999999999999999988776644 222
Q ss_pred --ccCCeeEEEEC-----CCC---CEEEEEeCCCcEEEEEcCC-C-ceeeeeeeecCCCCccCCCCeEEEE-EcCC----
Q 001386 881 --HSKRVTGLVFS-----DAL---NILVSSGGDAQIFVWDVDG-W-GIQTCRSLQTPDGVMTLAPSETHIQ-FHKD---- 943 (1088)
Q Consensus 881 --h~~~V~~l~~s-----~dg---~~las~s~Dg~i~iwd~~~-~-~~~~~~~~~~~~~~~~~~~~v~~~~-fs~d---- 943 (1088)
....|+++.|+ .|+ -.|++|...|.+.+|.+.- . ..-..........+. ..|..+. |+.+
T Consensus 132 ~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~---~~i~~I~~i~~~~G~~ 208 (395)
T PF08596_consen 132 KSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHD---SPILSIIPINADTGES 208 (395)
T ss_dssp SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS-------EEEEEETTT--B
T ss_pred cccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCC---CceEEEEEEECCCCCc
Confidence 23468888886 233 4588889999999998862 1 111111111111111 2344443 4322
Q ss_pred -----------------CCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEe-----eCCCEEEEEeCCCcEEEE
Q 001386 944 -----------------QTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFS-----CDCRMVFTSFVDGTLSIH 1001 (1088)
Q Consensus 944 -----------------g~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs-----~dg~~l~s~s~dg~v~vw 1001 (1088)
..+++++++..++++...+.+...... ........+++- ..+..|++-..+|.|+++
T Consensus 209 a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~ 287 (395)
T PF08596_consen 209 ALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIY 287 (395)
T ss_dssp -B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEE
T ss_pred ccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEE
Confidence 135666889999999999888776655 222333344452 356778888999999999
Q ss_pred EcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 1002 EASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 1002 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~ 1060 (1088)
.+...+.+........ .....+. ..++++ +|+.++-. ...++.++.+....
T Consensus 288 SLP~Lkei~~~~l~~~----~d~~~~~--~ssis~-~Gdi~~~~-gpsE~~l~sv~~~~ 338 (395)
T PF08596_consen 288 SLPSLKEIKSVSLPPP----LDSRRLS--SSSISR-NGDIFYWT-GPSEIQLFSVWGEG 338 (395)
T ss_dssp ETTT--EEEEEE-SS-------HHHHT--T-EE-T-TS-EEEE--SSSEEEEEEEES--
T ss_pred ECCCchHhhcccCCCc----ccccccc--ccEECC-CCCEEEEe-CcccEEEEEEEccC
Confidence 9999999988764321 1111222 245576 67755544 45566666665544
No 352
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.90 E-value=0.012 Score=62.82 Aligned_cols=287 Identities=12% Similarity=0.028 Sum_probs=135.1
Q ss_pred EEEecCCceEEEecc-ccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-
Q 001386 740 LTYNNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS- 817 (1088)
Q Consensus 740 ~~~s~~g~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~- 817 (1088)
-+|.++|+.|+.++. +|.-.+|-++ +.++...+....+ . .......++|+.+.++...
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lD----------------L~t~~i~QLTdg~---g-~~~~g~~~s~~~~~~~Yv~~ 100 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLD----------------LATGEITQLTDGP---G-DNTFGGFLSPDDRALYYVKN 100 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEE----------------TTT-EEEE---SS-----B-TTT-EE-TTSSEEEEEET
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEE----------------cccCEEEECccCC---C-CCccceEEecCCCeEEEEEC
Confidence 367889977665554 6666665443 3333322211111 1 1122456778888876654
Q ss_pred CCcEEEEEcCCceeEEEecCCCCCeEEEEEc-CCCCcEEEEEeC----------------------CCeEEEEEcCCcee
Q 001386 818 GGVISLYIVMTFKTILTIMPPSPTATSLAFN-PHDNNVIAIGMD----------------------DSTILIYNARSSEV 874 (1088)
Q Consensus 818 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-p~d~~~lasg~~----------------------dg~i~lwd~~~~~~ 874 (1088)
+..|+-.|+.+.+....+..+...+....|. ..|+..++-.-. ...|.--|+.+|+.
T Consensus 101 ~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~ 180 (386)
T PF14583_consen 101 GRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER 180 (386)
T ss_dssp TTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E
T ss_pred CCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce
Confidence 6689999999988777777666666555553 225555443211 23566678888876
Q ss_pred eeeeccccCCeeEEEECCCCCEEEEEeC----CC-cEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE
Q 001386 875 ISKLEGHSKRVTGLVFSDALNILVSSGG----DA-QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 949 (1088)
Q Consensus 875 ~~~l~~h~~~V~~l~~s~dg~~las~s~----Dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~ 949 (1088)
...+. -..-+..+.|||...-++.-+. |. .-|||-+++.......+.+... ...+.+=-|+|||..|..
T Consensus 181 ~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-----~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 181 KVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-----GESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp EEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-----TEEEEEEEE-TTSS-EEE
T ss_pred eEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-----CcccccccccCCCCEEEE
Confidence 54444 4455778999996555444332 23 1377877654322222222211 235778899999998886
Q ss_pred -Ee-----CCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCC----------------cEEEEEcCCCc
Q 001386 950 -VH-----ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG----------------TLSIHEASNLE 1007 (1088)
Q Consensus 950 -~~-----d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg----------------~v~vwd~~~~~ 1007 (1088)
+. +..|.-+|..+++...... ......+--++||++++-=+.|. -|+++++..+.
T Consensus 255 ~~~~~~~~~~~i~~~d~~t~~~~~~~~---~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~ 331 (386)
T PF14583_consen 255 DSYTPGGQDFWIAGYDPDTGERRRLME---MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGR 331 (386)
T ss_dssp EEEETTT--EEEEEE-TTT--EEEEEE---E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTE
T ss_pred EeecCCCCceEEEeeCCCCCCceEEEe---CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCc
Confidence 31 3357888888886543211 22455666688999877544442 45667887776
Q ss_pred eEEEecc-ccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeC
Q 001386 1008 VQCRILS-TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1056 (1088)
Q Consensus 1008 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l 1056 (1088)
...-..- ..|.....+..... ....|+|++...|+++...|...||-+
T Consensus 332 ~~~l~~h~~sw~v~~~~~q~~h-Php~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 332 FRKLARHDTSWKVLDGDRQVTH-PHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEEEEE-------BTTBSSTT-----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred eeeeeeccCcceeecCCCccCC-CCCccCCCCCEEEEECCCCCCccEEEE
Confidence 5422220 11111110011111 237899944345556666676555543
No 353
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.90 E-value=0.0012 Score=73.51 Aligned_cols=119 Identities=11% Similarity=0.070 Sum_probs=89.1
Q ss_pred CceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCc-ceeeeecCCCcceeccccCCceeecCCCCCCCCcccc
Q 001386 625 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN-LRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1088)
Q Consensus 625 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 703 (1088)
+.--+++..+++++.|++.|.+++|+-..+.......+.... +....+ +++..+++.
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~v----------------------s~~e~lvAa 93 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSV----------------------SSVEYLVAA 93 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEe----------------------cchhHhhhh
Confidence 445566778899999999999999998887554433322333 333333 356677788
Q ss_pred cccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccC
Q 001386 704 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR 765 (1088)
Q Consensus 704 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~ 765 (1088)
|+..+.|.++.+....+.....+.--+..|...|++++|++++..+++|.+.|.|.+-.++.
T Consensus 94 gt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 94 GTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 88888888888777666655555555555889999999999999999999999999887765
No 354
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.89 E-value=1.7e-05 Score=52.80 Aligned_cols=32 Identities=34% Similarity=0.552 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHhhhhcCcHHHHHHHHHhcCCC
Q 001386 4 LNKDLVFLILQFLNEEGFTESAHMLERESRFY 35 (1088)
Q Consensus 4 ~~~~~~~li~q~L~~~g~~~s~~~L~~Es~~~ 35 (1088)
.++++.++|+|||...||.+||++|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999974
No 355
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.87 E-value=0.057 Score=62.71 Aligned_cols=61 Identities=13% Similarity=0.148 Sum_probs=42.9
Q ss_pred CcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccc
Q 001386 819 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH 881 (1088)
Q Consensus 819 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h 881 (1088)
|.|.-+|+.+++.............+.... .+.+++.++.+|.++.+|.++|+.+..++-.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 457888888988887765333222222222 3447777888999999999999999877643
No 356
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.81 E-value=0.012 Score=65.97 Aligned_cols=198 Identities=17% Similarity=0.165 Sum_probs=110.2
Q ss_pred EEEecCCCEEEEEeCC------------cEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC
Q 001386 804 FALSKNDAYLFSASGG------------VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 871 (1088)
Q Consensus 804 ~~~s~dg~~l~~~~dg------------~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~ 871 (1088)
++.+|.|..+|...+. .|+||+.. |+.+.++.-..+.+.++.|+. +. .|++-..||.+++||+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCCC
Confidence 5667777777776544 58999876 566666554448999999997 54 455667899999999863
Q ss_pred ce------eeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCcee-eeeee-ecCCCCccC--CCCeEE-EEE
Q 001386 872 SE------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ-TCRSL-QTPDGVMTL--APSETH-IQF 940 (1088)
Q Consensus 872 ~~------~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~-~~~~~-~~~~~~~~~--~~~v~~-~~f 940 (1088)
.. .+....-....+....+..+|-.+. ..++.+.+ +...... ..+.+ ..+...... ...... ..+
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~--v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l 186 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYV--VNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL 186 (410)
T ss_pred ceeechhhhccccCcccccccccccCCCCEEEE--CCCCeEEE--EeCccccchhhccccCCCcccccccccccccceEe
Confidence 22 1111111222233333444552233 33443333 3322111 00111 111100000 000111 345
Q ss_pred cCCCCEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001386 941 HKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 941 s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1013 (1088)
+.+....+. ..++.+.+.+....+. . ...+++..+++||+|++||.-..+|.+.|...+-.+..+.+.
T Consensus 187 ~~~~~~~i~~~~g~~i~~i~~~~~~~----i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 187 SSDRVVEILLANGETIYIIDENSFKQ----I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred ecCcceEEEEecCCEEEEEEcccccc----c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 555555444 4555666444332211 1 124689999999999999999999999999877777776665
No 357
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.009 Score=66.53 Aligned_cols=208 Identities=13% Similarity=0.146 Sum_probs=146.7
Q ss_pred CeeEEEEecCCCEEEEEe--CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeC---CCeEEEEEcCCcee
Q 001386 800 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD---DSTILIYNARSSEV 874 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~---dg~i~lwd~~~~~~ 874 (1088)
....+++++++..+.... ++.|.+.|..+.+........ .....++++| +++.+.++.. ++++.+.|..+++.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeE
Confidence 345678888888665554 688999998877766665422 2667899999 5655555444 68999999999988
Q ss_pred eeeeccccCCeeEEEECCCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE--e
Q 001386 875 ISKLEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--H 951 (1088)
Q Consensus 875 ~~~l~~h~~~V~~l~~s~dg~~las~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~--~ 951 (1088)
+.....-..+ ..++++|+|..+..+. .++.|.+.|..+..... . ..............++++|||.++.+. .
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~---~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-G---SVGSLVGVGTGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-c---ccccccccCCCCceEEECCCCCEEEEEecc
Confidence 8775544444 8899999999766554 78999999977643221 1 100001111235689999999977763 2
Q ss_pred C--CeEEEEEcCcceeeeeeec-CCCcCEEEEEEeeCCCEEEEEeC-CCcEEEEEcCCCceEEEeccc
Q 001386 952 E--THLAIYEAEELTCLKQWFP-ISSVPISQATFSCDCRMVFTSFV-DGTLSIHEASNLEVQCRILST 1015 (1088)
Q Consensus 952 d--~~i~vwd~~~~~~~~~~~~-~h~~~v~~l~fs~dg~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~ 1015 (1088)
+ +.+...|..++........ +-. ....+.++|+|+++.+... .+.+.+-|..+......+...
T Consensus 228 ~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 228 SGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred CCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 2 5899999998887776222 222 5667899999999888744 489999999998887766533
No 358
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.79 E-value=0.0022 Score=71.27 Aligned_cols=172 Identities=16% Similarity=0.184 Sum_probs=109.2
Q ss_pred EEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEe---CC-CeEEEEEcCCceee--eeeccccCCeeEEEECCCC
Q 001386 821 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---DD-STILIYNARSSEVI--SKLEGHSKRVTGLVFSDAL 894 (1088)
Q Consensus 821 i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~---~d-g~i~lwd~~~~~~~--~~l~~h~~~V~~l~~s~dg 894 (1088)
+.+-|.. +.....+......+..-+|+| +++.++... .. ..++++++.+++.. ..+.++. ..-+|||||
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG 249 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPDG 249 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCCC
Confidence 4444544 555556665566777788999 666655432 22 36999999987643 3344444 457899999
Q ss_pred CEEEEEe-CCCc--EEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeC--C--eEEEEEcCcceeee
Q 001386 895 NILVSSG-GDAQ--IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE--T--HLAIYEAEELTCLK 967 (1088)
Q Consensus 895 ~~las~s-~Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d--~--~i~vwd~~~~~~~~ 967 (1088)
+.|+.+. .||. |.+.|+.++... .+....+. -..-.|+|||+.++-.+| | .|.+++...+...+
T Consensus 250 ~~l~f~~~rdg~~~iy~~dl~~~~~~---~Lt~~~gi------~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r 320 (425)
T COG0823 250 SKLAFSSSRDGSPDIYLMDLDGKNLP---RLTNGFGI------NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR 320 (425)
T ss_pred CEEEEEECCCCCccEEEEcCCCCcce---ecccCCcc------ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE
Confidence 9987654 5665 555666664411 12222222 236789999999998655 3 48888888776543
Q ss_pred eeecCCCcCEEEEEEeeCCCEEEEEeCC-Cc--EEEEEcCCCce
Q 001386 968 QWFPISSVPISQATFSCDCRMVFTSFVD-GT--LSIHEASNLEV 1008 (1088)
Q Consensus 968 ~~~~~h~~~v~~l~fs~dg~~l~s~s~d-g~--v~vwd~~~~~~ 1008 (1088)
....+ +.-....+||||++++..+.. |. |.+.++.++.-
T Consensus 321 iT~~~--~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~ 362 (425)
T COG0823 321 LTFSG--GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK 362 (425)
T ss_pred eeccC--CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence 32322 222277899999999877743 44 67777777664
No 359
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.73 E-value=0.0082 Score=66.16 Aligned_cols=255 Identities=14% Similarity=0.138 Sum_probs=133.9
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCccee------e------------eceeeeeeccccc------cceeee
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF------I------------RNFKVWDIGACSM------LFKTAL 391 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~------~------------~~~~~~d~~~~~~------~~~~~~ 391 (1088)
.|+.+.|+++-.. ||+|...|.|.||.+...+.-. . .+-.+-|+..... ..+..+
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 6889999998764 7889999999999886442221 0 0112334432111 123345
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEecc------CCCCEEEEEec---CCCC---cEEEE
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA------HVGNVNDLAFS---APCK---QISVI 459 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~------h~~~v~~~~~s---~d~~---~l~l~ 459 (1088)
+....++|++++.| |=.++|+|+.+|.+.|.|+.....+.. ..+.. ....|+++.|+ .++. .+.++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 66678999999998 667999999999999999977654432 12333 33468888886 2222 24788
Q ss_pred EEeCCCcEEEEeCC--C-Ccee----EEeccCCccEEEEeeeeeCCc-------------------eEEEEEecCCeEEE
Q 001386 460 TCGDDKTIKVWDAV--T-GSRT----YSFEGHGAPVYSLCPHAKENI-------------------HFIFSISVDGKIKA 513 (1088)
Q Consensus 460 s~s~d~~i~vwd~~--~-~~~~----~~~~~~~~~v~~~~~~~~~~~-------------------~~l~s~~~dg~i~i 513 (1088)
+|...|.+.+|.+. . +... .....+.++|..+......+| .-++....+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 89999999999764 1 2222 122246677766654311111 22445556788999
Q ss_pred EECCCCCceEEecCCCCceEEEEEc-----cCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccc-cccccEEEEEEe
Q 001386 514 WLYDSLGARVDYDAPGLGCTRMAYS-----ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ-LQHNSVSVVHFD 587 (1088)
Q Consensus 514 wd~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~ 587 (1088)
+...+.+...........+..+++- ..+..|++... ++.++++.+..-+.+....... .....+...+++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~----~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN----NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET----TSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC----CCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9888776655544332344445553 24555555543 5569999998887777766532 011223445566
Q ss_pred CCCCEEEEEe
Q 001386 588 TAKDQILAAG 597 (1088)
Q Consensus 588 ~~~~~l~~~s 597 (1088)
++|..++-.+
T Consensus 316 ~~Gdi~~~~g 325 (395)
T PF08596_consen 316 RNGDIFYWTG 325 (395)
T ss_dssp TTS-EEEE-S
T ss_pred CCCCEEEEeC
Confidence 6666554443
No 360
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.72 E-value=0.0084 Score=67.01 Aligned_cols=223 Identities=10% Similarity=0.071 Sum_probs=116.5
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+......+..+.++|+|++++++ .+|.-.|+..... +. ...+.-...+|.+.++ +++-...++|.|+.
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~---r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW---RN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYK 95 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT---EE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEE
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC---cc-----cccCceeEEEEecCcc---EEEEECCCeEEEEE
Confidence 33455668889999999999994 6777777773321 21 1123455788998665 56666688899963
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCC
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
--+.+....+.. ...+..+-. |.+|...+ ++.|.+||+.+.+.+..+... +|..+.|+++|.+++..+.
T Consensus 96 n~~~~~~k~i~~-~~~~~~If~-----G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~-- 164 (443)
T PF04053_consen 96 NFKNEVVKSIKL-PFSVEKIFG-----GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTK-- 164 (443)
T ss_dssp TTEE-TT------SS-EEEEE------SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--
T ss_pred cCccccceEEcC-CcccceEEc-----CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeC--
Confidence 223333233331 123333321 45555554 448999999999888877755 3889999999999999873
Q ss_pred CCceeEEEEeCCCC-----------ceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe--eeEEEeC
Q 001386 552 EGESFLVEWNESEG-----------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ--LLTTIDA 618 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~--~~~~~~~ 618 (1088)
..+++++.... .....+.... ..|.+.+|..+ .++-.+.. .++-+ -.|+ .+..+.
T Consensus 165 ---~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~---~~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge~~~i~~ld- 232 (443)
T PF04053_consen 165 ---DSIYILKYNLEAVAAIPEEGVEDAFELIHEIS---ERIKSGCWVED--CFIYTTSN-HLKYL--VNGETGIIAHLD- 232 (443)
T ss_dssp ----SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-TT-EEEEE--ETTEEEEEEE-S-
T ss_pred ---CeEEEEEecchhcccccccCchhceEEEEEec---ceeEEEEEEcC--EEEEEcCC-eEEEE--EcCCcceEEEcC-
Confidence 23666654322 0222222212 46888888766 44444444 66653 3333 233332
Q ss_pred CCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCC
Q 001386 619 GGGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1088)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 653 (1088)
.++.-+.+.++.+.+.....++.+..+.+..
T Consensus 233 ----~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 233 ----KPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp ----S--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred ----CceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 1356677778777888888888888887763
No 361
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.64 E-value=0.015 Score=64.98 Aligned_cols=219 Identities=16% Similarity=0.164 Sum_probs=118.8
Q ss_pred CCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeee
Q 001386 798 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 877 (1088)
Q Consensus 798 ~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~ 877 (1088)
...+..+.++|+|++++++++|...|+.....+.... +....++|.+ .++ +|+-...++|.|+.--+.+....
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence 3457789999999999999999999998554444322 3345688988 565 55566688899963323333223
Q ss_pred eccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEE
Q 001386 878 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI 957 (1088)
Q Consensus 878 l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~v 957 (1088)
+... ..+..|.. |.+|...+.+ .|.+||+.+++ .+....-. .|..+.|+++|.+++...+..+.+
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~-----~i~~i~v~-----~vk~V~Ws~~g~~val~t~~~i~i 169 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGK-----LIRRIDVS-----AVKYVIWSDDGELVALVTKDSIYI 169 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT-------EEEEESS------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcc-----eeeEEecC-----CCcEEEEECCCCEEEEEeCCeEEE
Confidence 3321 23444443 8888877665 79999999854 33333221 368999999999999988888888
Q ss_pred EEcCcc-----------eeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceE--EEeccccccCCCCcc
Q 001386 958 YEAEEL-----------TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ--CRILSTAYLRPTTSC 1024 (1088)
Q Consensus 958 wd~~~~-----------~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~--~~~~~~~~~~~~~~~ 1024 (1088)
++.... ..+.... .-...|.+.+|-.| .++-.+.. .++. +.+|+.- +.+.
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~-E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld----------- 232 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIH-EISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLD----------- 232 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEE-EE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-S-----------
T ss_pred EEecchhcccccccCchhceEEEE-EecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcC-----------
Confidence 886644 0111111 11567888888776 33333333 6665 5555532 2221
Q ss_pred ccccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001386 1025 LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1058 (1088)
Q Consensus 1025 ~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~ 1058 (1088)
..++. +.+.| ..+.+.....|+.|..+.+..
T Consensus 233 ~~~yl--lgy~~-~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 233 KPLYL--LGYLP-KENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp S--EE--EEEET-TTTEEEEE-TT--EEEEE--H
T ss_pred CceEE--EEEEc-cCCEEEEEECCCCEEEEEECH
Confidence 11333 44555 347788888999999888754
No 362
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.62 E-value=0.028 Score=55.82 Aligned_cols=254 Identities=17% Similarity=0.162 Sum_probs=142.6
Q ss_pred EEEEEEeCCCCE-EEEEeCCCc-EEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCC-----CcEEEEeCCC
Q 001386 581 VSVVHFDTAKDQ-ILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----NRIKILETPE 653 (1088)
Q Consensus 581 v~~~~~~~~~~~-l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~~~ 653 (1088)
-..++|+|.... ++.+-.-|+ ..++|..+.+...++........--.-+|||||.+|...-.| |.|-|||...
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 345677776543 344555554 567899888877777654333223346799999998876544 6788888774
Q ss_pred CC-cccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCcc
Q 001386 654 SN-SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV 732 (1088)
Q Consensus 654 ~~-~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 732 (1088)
+- .+..+..
T Consensus 150 ~fqrvgE~~t---------------------------------------------------------------------- 159 (366)
T COG3490 150 GFQRVGEFST---------------------------------------------------------------------- 159 (366)
T ss_pred ccceeccccc----------------------------------------------------------------------
Confidence 31 1111111
Q ss_pred ccccEEEEEEecCCceEEEeccccceEEE-EccCCCCCC-CCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCC
Q 001386 733 KANKISRLTYNNGGQAIFALASNGVHLMW-RWPRNDLTL-STEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 810 (1088)
Q Consensus 733 ~~~~i~~~~~s~~g~~l~~~~~dg~v~iw-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 810 (1088)
|.-....+.+.+||+.++.+.. -|... ++...+... +.+.+.-+.+..+|..+....++...+...|+.++..+||
T Consensus 160 ~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dg 237 (366)
T COG3490 160 HGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDG 237 (366)
T ss_pred CCcCcceeEEecCCcEEEEeCC--ceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCC
Confidence 2223345667777776654432 23322 222222111 1223344556667776666666655577889999999999
Q ss_pred CEEEEEe-CCc-----EEEEEcCCceeEEEecCC-------CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeee
Q 001386 811 AYLFSAS-GGV-----ISLYIVMTFKTILTIMPP-------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 877 (1088)
Q Consensus 811 ~~l~~~~-dg~-----i~iwd~~~~~~~~~~~~~-------~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~ 877 (1088)
..++.+. .|. --+=-...++.+.-+... ...|-+++....++-..++.-..+...+||..+|.++..
T Consensus 238 tvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 238 TVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred cEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence 9887764 211 111112233443333322 245778888874555555555666888999999987654
Q ss_pred eccccCCeeEEEECCCCCEEEEEeCCCcEEEEE
Q 001386 878 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 910 (1088)
Q Consensus 878 l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd 910 (1088)
-.- ..+..++- ...-++..+.+|.+.++.
T Consensus 318 a~l--~daaGva~--~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 318 AAL--PDAAGVAA--AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred ccc--ccccccee--ccCceEEecCCceEEecc
Confidence 321 11222332 233355556677777763
No 363
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.62 E-value=0.039 Score=62.94 Aligned_cols=247 Identities=13% Similarity=0.111 Sum_probs=126.8
Q ss_pred CeEEEEECCCCCEEEEE-eCCC----EEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEe-C--------
Q 001386 398 SVNRVVWSPDGSLLGVA-YSKH----IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-D-------- 463 (1088)
Q Consensus 398 ~V~~l~~s~dg~~las~-~~dg----~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s-~-------- 463 (1088)
.+...++||||+++|.+ +..| .++++|+++|+.+... +... ....+.|.+|++. ++.+.. .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~--i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG--IENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE--EEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc--cccc--ccceEEEeCCCCE-EEEEEeCcccccccCC
Confidence 44468899999999976 3333 5999999999654321 2211 1123999999985 233332 2
Q ss_pred -CCcEEEEeCCCCcee--EEeccCCcc--EEEEeeeeeCCceEEEEEecC----CeEEEEECCCC----CceEEecCCCC
Q 001386 464 -DKTIKVWDAVTGSRT--YSFEGHGAP--VYSLCPHAKENIHFIFSISVD----GKIKAWLYDSL----GARVDYDAPGL 530 (1088)
Q Consensus 464 -d~~i~vwd~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~----~~~~~~~~~~~ 530 (1088)
...|+.|.+.++..- ..+...... ...+.. +.++++++..+.. ..+.+.++... .....+.....
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~--s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSR--SKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE---TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEe--cCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 224788888776433 344444333 334444 6677776654433 23677777764 22333333333
Q ss_pred ceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCce---eEEEeccccccccEEEEEEeCCCCEEEEE-eCCC--cEEE
Q 001386 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDH--VIKI 604 (1088)
Q Consensus 531 ~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg--~i~i 604 (1088)
.+....-.. +..++..+..+...+.|...++..... ...+..+. ....+..+. ..+++|+.. ..++ .|++
T Consensus 278 ~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~-~~~~l~~~~--~~~~~Lvl~~~~~~~~~l~v 353 (414)
T PF02897_consen 278 GVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED-EDVSLEDVS--LFKDYLVLSYRENGSSRLRV 353 (414)
T ss_dssp S-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S-SSEEEEEEE--EETTEEEEEEEETTEEEEEE
T ss_pred ceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC-CceeEEEEE--EECCEEEEEEEECCccEEEE
Confidence 333222222 444443333444567788888877652 22444333 011344444 345555553 3343 5888
Q ss_pred EEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC----CCcEEEEeCCCCCc
Q 001386 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESNS 656 (1088)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iwd~~~~~~ 656 (1088)
+++..+.....+..... ..|..+...+++..+..... -+++..||+.+++.
T Consensus 354 ~~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 354 YDLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 99984555555554332 12344444455544433222 25677788887654
No 364
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.61 E-value=0.0035 Score=72.95 Aligned_cols=187 Identities=10% Similarity=0.077 Sum_probs=106.3
Q ss_pred CCeeEEEEecCCCEEEEEe-------CC--cEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCC--------
Q 001386 799 EAVPCFALSKNDAYLFSAS-------GG--VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD-------- 861 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~-------dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d-------- 861 (1088)
..+.+.++||||+.+|... +. .|.+++.. +.. ..+.. ....+.-.|+| ||+.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 3577899999999887764 33 35555542 222 33322 22478899999 77766665432
Q ss_pred ----CeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEE---EEcCCCceeeeeeeecCCCCccCCCC
Q 001386 862 ----STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV---WDVDGWGIQTCRSLQTPDGVMTLAPS 934 (1088)
Q Consensus 862 ----g~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~i---wd~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1088)
+.+.+.++..++... ...+.|..+.|||||..+|... +|.|.+ -....|+...........+.. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 234444444443322 2356799999999999988776 477777 443444322211111111111 13
Q ss_pred eEEEEEcCCCCEEEEEeCCeEEEEEcCc-ceeeeeeecC--CCcCEEEEEEeeCCCEEEEEeCCCcEE
Q 001386 935 ETHIQFHKDQTRFLLVHETHLAIYEAEE-LTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLS 999 (1088)
Q Consensus 935 v~~~~fs~dg~~l~~~~d~~i~vwd~~~-~~~~~~~~~~--h~~~v~~l~fs~dg~~l~s~s~dg~v~ 999 (1088)
+.++.|..++.+++...++...+|.+.- |..... ..+ ...++.+++-+++ .++.+..+|.+.
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~-~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDA-LPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecCCccccc-cCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 5789999999976554444344454432 222221 222 2566777777753 455556666333
No 365
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.61 E-value=0.017 Score=57.41 Aligned_cols=231 Identities=15% Similarity=0.072 Sum_probs=136.1
Q ss_pred EEEEecCC-CEEEEEe-CCc-EEEEEcCCceeEEEecCCCCC--eEEEEEcCCCCcEEEEEeCC-----CeEEEEEcCCc
Q 001386 803 CFALSKND-AYLFSAS-GGV-ISLYIVMTFKTILTIMPPSPT--ATSLAFNPHDNNVIAIGMDD-----STILIYNARSS 872 (1088)
Q Consensus 803 ~~~~s~dg-~~l~~~~-dg~-i~iwd~~~~~~~~~~~~~~~~--i~~l~~sp~d~~~lasg~~d-----g~i~lwd~~~~ 872 (1088)
.++++|-- .-++.+. -|+ ..++|....+...++....+. --.=.||| ||.+|...-.| |.|-|||...+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecccc
Confidence 46777743 3445554 344 788999888777665533322 22347999 88888765433 68999999864
Q ss_pred -eeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEE--------------------EcCCCceeeeeeeecCCCCccC
Q 001386 873 -EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW--------------------DVDGWGIQTCRSLQTPDGVMTL 931 (1088)
Q Consensus 873 -~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iw--------------------d~~~~~~~~~~~~~~~~~~~~~ 931 (1088)
+.+.++..|.-....+.|.+||+.|+.+. |-|..- |-.+|.......+.....+
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~--- 225 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ--- 225 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh---
Confidence 56778888887888899999999998764 334333 2222221111111100111
Q ss_pred CCCeEEEEEcCCCCEEEEE-eCC-----eEEEEEcCcceeeeeeecC------CCcCEEEEEEeeCCCEEEEEe-CCCcE
Q 001386 932 APSETHIQFHKDQTRFLLV-HET-----HLAIYEAEELTCLKQWFPI------SSVPISQATFSCDCRMVFTSF-VDGTL 998 (1088)
Q Consensus 932 ~~~v~~~~fs~dg~~l~~~-~d~-----~i~vwd~~~~~~~~~~~~~------h~~~v~~l~fs~dg~~l~s~s-~dg~v 998 (1088)
..|.+++..+||+.++.+ ..| -..|=-...|+.+.-+... -...|-+++..-+..+++..+ .-+..
T Consensus 226 -lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~ 304 (366)
T COG3490 226 -LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRA 304 (366)
T ss_pred -cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeE
Confidence 358899999999887764 111 1111112223322221111 145667777776556655554 45567
Q ss_pred EEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001386 999 SIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1055 (1088)
Q Consensus 999 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~ 1055 (1088)
.+||..+|.++........ .+ ++- ...-|++.+.+|.+.+++
T Consensus 305 vi~da~tG~vv~~a~l~da--aG----------va~---~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 305 VIWDAATGAVVSEAALPDA--AG----------VAA---AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEEEcCCCcEEeccccccc--cc----------cee---ccCceEEecCCceEEecc
Confidence 8899999998765442211 11 222 234577788899999883
No 366
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.59 E-value=0.035 Score=59.20 Aligned_cols=234 Identities=10% Similarity=0.130 Sum_probs=133.9
Q ss_pred cCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEE
Q 001386 744 NGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISL 823 (1088)
Q Consensus 744 ~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~i 823 (1088)
..++.|+.|+.+| +.++++..... . ... .....|..+.+.++-+.+++-+|+.+.+
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~----------------~-~~i------~~~~~I~ql~vl~~~~~llvLsd~~l~~ 60 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSK----------------P-TRI------LKLSSITQLSVLPELNLLLVLSDGQLYV 60 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcc----------------c-eeE------eecceEEEEEEecccCEEEEEcCCccEE
Confidence 3567788888888 88887621110 0 000 1334499999999999999889999999
Q ss_pred EEcCCceeEEEe--------------cCCCCCeEEEE--EcCCCCcEEEEEeCCCeEEEEEcCCc-----eeeeeecccc
Q 001386 824 YIVMTFKTILTI--------------MPPSPTATSLA--FNPHDNNVIAIGMDDSTILIYNARSS-----EVISKLEGHS 882 (1088)
Q Consensus 824 wd~~~~~~~~~~--------------~~~~~~i~~l~--~sp~d~~~lasg~~dg~i~lwd~~~~-----~~~~~l~~h~ 882 (1088)
+++......... ......+...+ -...+..+|+++. ...|.+|..... +....+. -.
T Consensus 61 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~-lp 138 (275)
T PF00780_consen 61 YDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS-LP 138 (275)
T ss_pred EEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE-cC
Confidence 998765444311 11222344444 1222445555554 448888887653 3445554 34
Q ss_pred CCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC----CCccCCCCeEEEEEcCCCCEEEEEeCCeEEEE
Q 001386 883 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD----GVMTLAPSETHIQFHKDQTRFLLVHETHLAIY 958 (1088)
Q Consensus 883 ~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vw 958 (1088)
..+.+++|. ++.++.+..++ ..+.|+.++............ .......++..+.. +++.+|++ .+..-...
T Consensus 139 ~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-~~~~g~fv 213 (275)
T PF00780_consen 139 DPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC-YDNIGVFV 213 (275)
T ss_pred CCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE-ecceEEEE
Confidence 678999998 55677776655 789999976533221111110 00000012333333 34555554 34433344
Q ss_pred EcCcceeee-eeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001386 959 EAEELTCLK-QWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 959 d~~~~~~~~-~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1013 (1088)
|. .|+..+ .... =...+.++++. ..||+..+. +.|.||++.+|+++..+.
T Consensus 214 ~~-~G~~~r~~~i~-W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 214 NK-NGEPSRKSTIQ-WSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred cC-CCCcCcccEEE-cCCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence 43 454433 1111 13455666664 447776554 569999999999987776
No 367
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.54 E-value=0.22 Score=56.00 Aligned_cols=135 Identities=17% Similarity=0.250 Sum_probs=78.0
Q ss_pred EEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccc-c
Q 001386 805 ALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH-S 882 (1088)
Q Consensus 805 ~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h-~ 882 (1088)
.++.+....+... ++.+.+.+-...+. +. ..+++..+++|| +++++|.-..+|.+.+.+..-.+.+..+.-. .
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~ 259 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSK 259 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcC
Confidence 3444554444443 55566444333211 22 346899999999 8999999999999999987666666555533 3
Q ss_pred CCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCc
Q 001386 883 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 962 (1088)
Q Consensus 883 ~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~ 962 (1088)
.....+.|.-++..++.- ...|.+..... ..+.|.-++..++...-..++|..-..
T Consensus 260 ~~p~~~~WCG~dav~l~~--~~~l~lvg~~~----------------------~~~~~~~~~~~~l~~E~DG~riit~~~ 315 (410)
T PF04841_consen 260 SPPKQMAWCGNDAVVLSW--EDELLLVGPDG----------------------DSISFWYDGPVILVSEIDGVRIITSTS 315 (410)
T ss_pred CCCcEEEEECCCcEEEEe--CCEEEEECCCC----------------------CceEEeccCceEEeccCCceEEEeCCc
Confidence 455667775443333322 22333333221 134555555555555444478877666
Q ss_pred ceeeee
Q 001386 963 LTCLKQ 968 (1088)
Q Consensus 963 ~~~~~~ 968 (1088)
-+.+..
T Consensus 316 ~~~l~~ 321 (410)
T PF04841_consen 316 HEFLQR 321 (410)
T ss_pred eEEEEE
Confidence 666555
No 368
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.52 E-value=3.8e-05 Score=83.51 Aligned_cols=203 Identities=12% Similarity=0.174 Sum_probs=126.8
Q ss_pred CCCceeeeecCCCC-eEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-CCCEE
Q 001386 334 SSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL 411 (1088)
Q Consensus 334 ~~~V~~v~~spdg~-~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~-dg~~l 411 (1088)
+..+.|++.+-+.. -++++|..+|.|-+-.+....-. ...+..+|....++++|++ |...|
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~L 118 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNHL 118 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHHH
Confidence 34788888765433 58999999999998877543211 1122556888999999999 78888
Q ss_pred EEEe----CCCEEEEEEccCC--CcccceeEec-cCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce-eEEecc
Q 001386 412 GVAY----SKHIVQLYAYHGG--SDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEG 483 (1088)
Q Consensus 412 as~~----~dg~i~vwd~~~~--~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~-~~~~~~ 483 (1088)
|+|- .|..+.|||+.++ ...... .+. +-.....+++|..+.+ ++.+|...+.+.++|++.... ...+
T Consensus 119 Aagldkhrnds~~~Iwdi~s~ltvPke~~-~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv-- 193 (783)
T KOG1008|consen 119 AAGLDKHRNDSSLKIWDINSLLTVPKESP-LFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV-- 193 (783)
T ss_pred HhhhhhhcccCCccceecccccCCCcccc-ccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh--
Confidence 8873 3556999999987 221111 122 2334566889987777 788888888999999873221 1111
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEE-CCCCCceEE-ecCCC----CceEEEEEccCCCE-EEEEeeCCCCcee
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWL-YDSLGARVD-YDAPG----LGCTRMAYSANGRR-LFSCGTSKEGESF 556 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd-~~~~~~~~~-~~~~~----~~v~~~~~s~~g~~-l~~~~~~~~~~~~ 556 (1088)
.+..+..+.+.|- .+.++++-. ||.|.+|| ...-+.... +.... ..+..++|.|-..- +++... ..++
T Consensus 194 nTk~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~t 268 (783)
T KOG1008|consen 194 NTKYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSIT 268 (783)
T ss_pred hhhhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---Ccce
Confidence 2223334444331 223555544 99999999 433332221 11111 24788999996543 333332 2567
Q ss_pred EEEEeCC
Q 001386 557 LVEWNES 563 (1088)
Q Consensus 557 i~iwd~~ 563 (1088)
|+++|+.
T Consensus 269 Irlydi~ 275 (783)
T KOG1008|consen 269 IRLYDIC 275 (783)
T ss_pred EEEeccc
Confidence 8888875
No 369
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.13 Score=57.42 Aligned_cols=251 Identities=13% Similarity=0.118 Sum_probs=159.6
Q ss_pred CeEEEEECCCCCEEEEEeCCC-EEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc
Q 001386 398 SVNRVVWSPDGSLLGVAYSKH-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1088)
Q Consensus 398 ~V~~l~~s~dg~~las~~~dg-~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~ 476 (1088)
....++..+++..+....... .+..-+..... ... ....-...-..++.++++.. ..+....++.|.+.|..+.+
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~-~~~--~~~~g~~~p~~i~v~~~~~~-vyv~~~~~~~v~vid~~~~~ 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNT-VTQ--SLSVGGVYPAGVAVNPAGNK-VYVTTGDSNTVSVIDTATNT 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccce-eee--eccCCCccccceeeCCCCCe-EEEecCCCCeEEEEcCcccc
Confidence 455678888886655543222 34444433111 111 11111133457788888886 45555567899999988887
Q ss_pred eeEEeccCCccEEEEeeeeeCCceEEEEEec---CCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCC
Q 001386 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1088)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 553 (1088)
......... ....+++. ++++.+..+.. ++++.+.|-.+............+ ..++++|+|..++... ..
T Consensus 108 ~~~~~~vG~-~P~~~~~~--~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~---~~ 180 (381)
T COG3391 108 VLGSIPVGL-GPVGLAVD--PDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTN---SD 180 (381)
T ss_pred eeeEeeecc-CCceEEEC--CCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEe---cC
Confidence 776664332 34455664 45545554444 688888888877776664333334 7899999999888876 34
Q ss_pred ceeEEEEeCCCCceeEEEecc--ccccccEEEEEEeCCCCEEEEEeCC---CcEEEEEcCCCeeeEEEeCCCCCCCCceE
Q 001386 554 ESFLVEWNESEGAIKRTYQGL--QLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1088)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1088)
++.|.+.|..+....+ -... .........+.++|+|.++...... +.+...|..++............ ....+
T Consensus 181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v 258 (381)
T COG3391 181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGV 258 (381)
T ss_pred CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCce
Confidence 6779999977665553 1100 1011345678899999977775443 58999999988877763222222 34678
Q ss_pred EEecCCCEEEEEeCC-CcEEEEeCCCCCcccccc
Q 001386 629 CFNKNGTLLAVIANE-NRIKILETPESNSVDAAG 661 (1088)
Q Consensus 629 ~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~ 661 (1088)
.++|+|+.+.+.... +.+.+.|..+........
T Consensus 259 ~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 259 AVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred eECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 999999998888554 889998888776555433
No 370
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.47 E-value=0.0069 Score=71.32 Aligned_cols=148 Identities=12% Similarity=0.126 Sum_probs=101.9
Q ss_pred CCcEEEEE-eCCCeEEEEEcCCceeeeeeccccCC-eeEEEECC-----CCCEEEEEeCCCcEEEEEcCCCceeeeeeee
Q 001386 851 DNNVIAIG-MDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSD-----ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQ 923 (1088)
Q Consensus 851 d~~~lasg-~~dg~i~lwd~~~~~~~~~l~~h~~~-V~~l~~s~-----dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~ 923 (1088)
+.++|+.. .....|+-.|+..|+.+..+..|... |..++-.. +...-..|-.+..+..||..-.. ..++.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKLVD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC---Cceee
Confidence 45555543 35678999999999999999988754 55543321 12233446667779999987532 11121
Q ss_pred cCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 001386 924 TPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1003 (1088)
Q Consensus 924 ~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~ 1003 (1088)
............+|++-+.+|...+.+.+|.||+|| +.|....+.+++-+.+|.+|..+.||++|++.+ +..+.++++
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd-~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYD-RLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ccccccccCCCceEEEecCCceEEEEeCCCcEEeec-ccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 111111112357889999999888888999999999 456666666777789999999999999988554 667777775
No 371
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.46 E-value=0.036 Score=58.70 Aligned_cols=220 Identities=13% Similarity=0.075 Sum_probs=126.4
Q ss_pred EEEecCCCEEEEEe--CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeec--
Q 001386 804 FALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-- 879 (1088)
Q Consensus 804 ~~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~-- 879 (1088)
..|.++...|+... .+.|.-|+..+++. ..+..+......+.+.. ++ .|+++ .. .+++++..++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~-~g-~Lv~~-~~-g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALIDA-GG-RLIAC-EH-GVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeecC-CC-eEEEE-cc-ccEEEeccCCceeEEeccc
Confidence 35667777666665 78899999886643 23332333333344444 44 44433 23 36777776665532221
Q ss_pred --c-ccCCeeEEEECCCCCEEEEEeC-----C----CcEEEEEcC-CCceeeeeeeecCCCCccCCCCeEEEEEcCCCCE
Q 001386 880 --G-HSKRVTGLVFSDALNILVSSGG-----D----AQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 946 (1088)
Q Consensus 880 --~-h~~~V~~l~~s~dg~~las~s~-----D----g~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~ 946 (1088)
+ -....+.+...|+|.+.++... . ..=.+|-++ .+. ..+...++.. .-..++||||++.
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~-----~~~l~~~~~~---~~NGla~SpDg~t 176 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG-----VVRLLDDDLT---IPNGLAFSPDGKT 176 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC-----EEEeecCcEE---ecCceEECCCCCE
Confidence 1 1245677888999998886544 1 112455555 222 1222222111 2468999999987
Q ss_pred EEEE--eCCeEEEEEcCc--cee----eeeeecCCCcCEEEEEEeeCCCEEEEEeCCC-cEEEEEcCCCceEEEeccccc
Q 001386 947 FLLV--HETHLAIYEAEE--LTC----LKQWFPISSVPISQATFSCDCRMVFTSFVDG-TLSIHEASNLEVQCRILSTAY 1017 (1088)
Q Consensus 947 l~~~--~d~~i~vwd~~~--~~~----~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg-~v~vwd~~~~~~~~~~~~~~~ 1017 (1088)
|..+ ..+.|.-|++.. +.. .......+.+..-.++...+|.+-+++-.+| .|.+|+-. |+++..+....
T Consensus 177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~- 254 (307)
T COG3386 177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV- 254 (307)
T ss_pred EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC-
Confidence 7774 447788887652 221 1122223356677788888998876555554 89999988 99988877432
Q ss_pred cCCCCccccccceEEEECCCCCCEEEEEeC
Q 001386 1018 LRPTTSCLHVYPHAIAAHPLKPTQFAVGLT 1047 (1088)
Q Consensus 1018 ~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~ 1047 (1088)
.++.+++|--.+.+.|++.+.
T Consensus 255 ---------~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 255 ---------KRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred ---------CCCccceEeCCCcCEEEEEec
Confidence 234456665324455444443
No 372
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.45 E-value=0.11 Score=55.38 Aligned_cols=228 Identities=14% Similarity=0.070 Sum_probs=129.3
Q ss_pred CCCeEEEEEcccCcEEEEecCCC-cceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEE
Q 001386 345 VQHTLLLVGTNVGDTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLY 423 (1088)
Q Consensus 345 dg~~lla~g~~dg~i~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vw 423 (1088)
.++ .|+.|+.+| +.++++... ..... .+...|..+...|+-+.|++-+ |+.+.++
T Consensus 6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~~i---------------------~~~~~I~ql~vl~~~~~llvLs-d~~l~~~ 61 (275)
T PF00780_consen 6 WGD-RLLVGTEDG-LYVYDLSDPSKPTRI---------------------LKLSSITQLSVLPELNLLLVLS-DGQLYVY 61 (275)
T ss_pred CCC-EEEEEECCC-EEEEEecCCccceeE---------------------eecceEEEEEEecccCEEEEEc-CCccEEE
Confidence 355 578888888 999998322 22211 1233499999999888777764 4899999
Q ss_pred EccCCCccccee-----------EeccCCCCEEEEE--ecCCCCcEEEEEEeCCCcEEEEeCCCC-----ceeEEeccCC
Q 001386 424 AYHGGSDARQQL-----------EIDAHVGNVNDLA--FSAPCKQISVITCGDDKTIKVWDAVTG-----SRTYSFEGHG 485 (1088)
Q Consensus 424 d~~~~~~~~~~~-----------~~~~h~~~v~~~~--~s~d~~~l~l~s~s~d~~i~vwd~~~~-----~~~~~~~~~~ 485 (1088)
++..-....... ........+...+ =...+.. .++.+. .+.|.+|.+... +..+.+. -.
T Consensus 62 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~-~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~-lp 138 (275)
T PF00780_consen 62 DLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSR-RLCVAV-KKKILIYEWNDPRNSFSKLLKEIS-LP 138 (275)
T ss_pred EchhhccccccccccccccccccccccccCCeeEEeeccccccce-EEEEEE-CCEEEEEEEECCcccccceeEEEE-cC
Confidence 987654332110 0111223444444 1122332 444444 558888877653 3445554 34
Q ss_pred ccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCC------------CceEEEEEccCCCEEEEEeeCCCC
Q 001386 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG------------LGCTRMAYSANGRRLFSCGTSKEG 553 (1088)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------~~v~~~~~s~~g~~l~~~~~~~~~ 553 (1088)
..+.+++|. +..++.|..+ ...+.|+.++.....+.... .++..+. -+++.+|++...
T Consensus 139 ~~~~~i~~~----~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~~~---- 208 (275)
T PF00780_consen 139 DPPSSIAFL----GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCYDN---- 208 (275)
T ss_pred CCcEEEEEe----CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEE-eCCceEEEEecc----
Confidence 677888885 2356666644 47778888665544332211 1222222 344566655321
Q ss_pred ceeEEEEeCCCCceeE--EEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCC
Q 001386 554 ESFLVEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1088)
Q Consensus 554 ~~~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1088)
+-++=-..|+..+ .+.- . ..+..+++. ..++++.+. +.|.||++.++++++.+...
T Consensus 209 ---~g~fv~~~G~~~r~~~i~W-~---~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 209 ---IGVFVNKNGEPSRKSTIQW-S---SAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred ---eEEEEcCCCCcCcccEEEc-C---CchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 3333334454443 2222 1 344555553 467777766 45999999999999998754
No 373
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.40 E-value=0.46 Score=55.28 Aligned_cols=197 Identities=11% Similarity=0.087 Sum_probs=119.1
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeccCC-ccEEE----------EeeeeeCCceEEEEEecCCeEEEEECCCCCceEEe
Q 001386 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHG-APVYS----------LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1088)
Q Consensus 457 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-~~v~~----------~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 525 (1088)
.++.++.++.|.-.|..+|+.+.++.... ..+.. +++ .+..++.++.|+.+.-.|.++++.....
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av----~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL----YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE----ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 46667778889999999999887765321 11111 112 1236778889999999999998887765
Q ss_pred cCCCCc-eEEEEEcc---CCCEEEEEeeCC--CCceeEEEEeCCCCceeEEEeccccc----------------------
Q 001386 526 DAPGLG-CTRMAYSA---NGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ---------------------- 577 (1088)
Q Consensus 526 ~~~~~~-v~~~~~s~---~g~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~---------------------- 577 (1088)
...... -..+.-+| ++ .++++.... ..++.|+-+|..+|+.+-.+......
T Consensus 147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 432111 00111112 34 444443211 12567999999999887665432210
Q ss_pred ------cccE-EEEEEeCCCCEEEEEeCC-----C-----------cEEEEEcCCCeeeEEEeCCCCC-------CCCce
Q 001386 578 ------HNSV-SVVHFDTAKDQILAAGDD-----H-----------VIKIWDMNKVQLLTTIDAGGGL-------PENPR 627 (1088)
Q Consensus 578 ------~~~v-~~~~~~~~~~~l~~~s~d-----g-----------~i~iwd~~~~~~~~~~~~~~~~-------~~v~~ 627 (1088)
...+ ..+++.+....++.+..+ + .|.-.|+++|+....++...+. ....-
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l 305 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMIL 305 (527)
T ss_pred CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEE
Confidence 0111 134666666777765522 2 5677888999988877653221 01111
Q ss_pred EEEecCCC---EEEEEeCCCcEEEEeCCCCCccc
Q 001386 628 ICFNKNGT---LLAVIANENRIKILETPESNSVD 658 (1088)
Q Consensus 628 v~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~ 658 (1088)
+.+..+|+ .++.+..+|.+.+.|..+++.+.
T Consensus 306 ~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 306 FDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred EEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 22334676 78899999999999999997753
No 374
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.28 E-value=0.00011 Score=80.23 Aligned_cols=202 Identities=12% Similarity=0.108 Sum_probs=129.7
Q ss_pred EEEEeeeeeCCceEEEEEecCCeEEEEECCCCCce--EEecCCCCceEEEEEcc-CCCEEEEEeeCCCCceeEEEEeCCC
Q 001386 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESE 564 (1088)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd~~~ 564 (1088)
+.+++.....+...++.|..+|.|-+-.++..... .....+...+++++|++ |...||+|-.....+..+.|||+.+
T Consensus 59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s 138 (783)
T KOG1008|consen 59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINS 138 (783)
T ss_pred ceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceeccc
Confidence 34444433444457888888999988877654432 34455666899999988 6778888765556677899999987
Q ss_pred C--ceeE--EEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCC-CeeeEEEeCCCCCCCCceEEEec-CCCEEE
Q 001386 565 G--AIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNK-NGTLLA 638 (1088)
Q Consensus 565 ~--~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~ 638 (1088)
+ .+.. .+.+. ......+++|-.+.+.+++|.....+.++|++. ......+. +..+..+..+| .+.+++
T Consensus 139 ~ltvPke~~~fs~~--~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 139 LLTVPKESPLFSSS--TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQGITVDPFSPNYFC 212 (783)
T ss_pred ccCCCccccccccc--cccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcccceecCCCCCcee
Confidence 7 2221 12221 124566889998889999999999999999873 11122221 12356788888 777877
Q ss_pred EEeCCCcEEEEeCCCC--Cccccccccc----CcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCcccee
Q 001386 639 VIANENRIKILETPES--NSVDAAGVLS----DNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1088)
Q Consensus 639 ~~~~dg~i~iwd~~~~--~~~~~~~~~~----~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v 712 (1088)
+-. ||.|.+||..-+ ..+..+.... +.+..+++.|.. .|.+.+..-..++|++
T Consensus 213 s~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr--------------------tglla~l~RdS~tIrl 271 (783)
T KOG1008|consen 213 SNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR--------------------TGLLAVLSRDSITIRL 271 (783)
T ss_pred ccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC--------------------cchhhhhccCcceEEE
Confidence 666 899999994321 2233222222 247788888753 3444444445567888
Q ss_pred cccc
Q 001386 713 EKPL 716 (1088)
Q Consensus 713 w~~~ 716 (1088)
+++.
T Consensus 272 ydi~ 275 (783)
T KOG1008|consen 272 YDIC 275 (783)
T ss_pred eccc
Confidence 8743
No 375
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.24 E-value=0.092 Score=55.69 Aligned_cols=223 Identities=15% Similarity=0.100 Sum_probs=134.0
Q ss_pred eeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCC
Q 001386 339 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 418 (1088)
Q Consensus 339 ~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg 418 (1088)
.-.|.|+...++.+--..+.|.-|+..+|+... +. +.+.+.++..-.++..|+++ ..|
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~-~p~~~~~~~~~d~~g~Lv~~-~~g 86 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FP-SPGGFSSGALIDAGGRLIAC-EHG 86 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EE-CCCCcccceeecCCCeEEEE-ccc
Confidence 335778888777777778999999998775432 11 33444555555555555554 333
Q ss_pred EEEEEEccCCCcccceeEec-cC-CCCEEEEEecCCCCcEEEEEEeCC------------CcEEEEeCCCCceeEEeccC
Q 001386 419 IVQLYAYHGGSDARQQLEID-AH-VGNVNDLAFSAPCKQISVITCGDD------------KTIKVWDAVTGSRTYSFEGH 484 (1088)
Q Consensus 419 ~i~vwd~~~~~~~~~~~~~~-~h-~~~v~~~~~s~d~~~l~l~s~s~d------------~~i~vwd~~~~~~~~~~~~~ 484 (1088)
+.+++.+++.....+.... +. ....+.+...|+|. +.+ +... |.++..|. .+..++.+..+
T Consensus 87 -~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wf-gt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~ 161 (307)
T COG3386 87 -VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWF-GDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDD 161 (307)
T ss_pred -cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEE-eCCCccccCccccCCcceEEEEcC-CCCEEEeecCc
Confidence 6778876665422221111 11 23567788899998 333 3322 22333443 56666666665
Q ss_pred CccEEEEeeeeeCCceEEEEE-ecCCeEEEEECCCC-----Cc--eEEecCCCCceEEEEEccCCCEEEEEeeCCCCcee
Q 001386 485 GAPVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSL-----GA--RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1088)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~-----~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 556 (1088)
-..-+.++|+| |++.++.+ +..+.|.-|++... .. ........+..-.++...+|.+-+++... ...
T Consensus 162 ~~~~NGla~Sp--Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~---g~~ 236 (307)
T COG3386 162 LTIPNGLAFSP--DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG---GGR 236 (307)
T ss_pred EEecCceEECC--CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC---Cce
Confidence 56667888855 55555554 44588888877631 11 12222334455567788888877544321 235
Q ss_pred EEEEeCCCCceeEEEeccccccccEEEEEEe-CCCCEEEEEe
Q 001386 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAG 597 (1088)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s 597 (1088)
|..|+.. |+.+..+.... ..+.+++|. ++.+.|++.+
T Consensus 237 v~~~~pd-G~l~~~i~lP~---~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 237 VVRFNPD-GKLLGEIKLPV---KRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEEECCC-CcEEEEEECCC---CCCccceEeCCCcCEEEEEe
Confidence 9999998 99999888875 567777775 4556655544
No 376
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.18 E-value=0.99 Score=54.52 Aligned_cols=205 Identities=13% Similarity=0.145 Sum_probs=118.9
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeccCCcc--------EEEEeeeee--------------CCceEEEEEecCCeEEEE
Q 001386 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP--------VYSLCPHAK--------------ENIHFIFSISVDGKIKAW 514 (1088)
Q Consensus 457 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~--------v~~~~~~~~--------------~~~~~l~s~~~dg~i~iw 514 (1088)
.++.++.++.|.-.|..+|+.+.++...... ...+++... ..+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 4666677788888888888888776432211 112222211 133478888899999999
Q ss_pred ECCCCCceEEecCCCC------------ceEEEEEcc--CCCEEEEEeeCCC------CceeEEEEeCCCCceeEEEecc
Q 001386 515 LYDSLGARVDYDAPGL------------GCTRMAYSA--NGRRLFSCGTSKE------GESFLVEWNESEGAIKRTYQGL 574 (1088)
Q Consensus 515 d~~~~~~~~~~~~~~~------------~v~~~~~s~--~g~~l~~~~~~~~------~~~~i~iwd~~~~~~~~~~~~~ 574 (1088)
|.++++....+...+. ....+.-+| .+..+++++...+ ..+.|+-+|..+|+.+-.+..-
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 9998887765532211 000111122 2345555543222 2578999999999988766421
Q ss_pred cc--------------ccccE-EEEEEeCCCCEEEEEe------------------CCCcEEEEEcCCCeeeEEEeCCCC
Q 001386 575 QL--------------QHNSV-SVVHFDTAKDQILAAG------------------DDHVIKIWDMNKVQLLTTIDAGGG 621 (1088)
Q Consensus 575 ~~--------------~~~~v-~~~~~~~~~~~l~~~s------------------~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1088)
.. ....+ ...++.++...++.+. ..+.|.-.|.++|+....++...+
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 00 00111 2344555545544422 124566778888988877764211
Q ss_pred C-------CCCceEEEec-CCC---EEEEEeCCCcEEEEeCCCCCcccccc
Q 001386 622 L-------PENPRICFNK-NGT---LLAVIANENRIKILETPESNSVDAAG 661 (1088)
Q Consensus 622 ~-------~~v~~v~~s~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~ 661 (1088)
. ....-+.+.. +|+ .++.++.+|.+.++|..+++.+....
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 0 0011122332 553 78899999999999999998776543
No 377
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0029 Score=65.88 Aligned_cols=101 Identities=15% Similarity=0.279 Sum_probs=84.2
Q ss_pred HHHHHHHHHhhhhcCcHHHHHHHHHhcCCCh----------hHHHHHHHhcCccHHHHHHhhccC-ccccCccccchhhh
Q 001386 6 KDLVFLILQFLNEEGFTESAHMLERESRFYF----------DMKFFEDMILDGKWEDVEQYLSSF-TKVDDNRYSTKIYF 74 (1088)
Q Consensus 6 ~~~~~li~q~L~~~g~~~s~~~L~~Es~~~~----------~~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~ 74 (1088)
+.+..+|..++...|+.+.+..|-+|+|... ++..+-.+|.+|+-+.|++.+..- ..+.+. ..++-|
T Consensus 117 ~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~--~s~LE~ 194 (394)
T KOG2817|consen 117 QVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK--SSSLEF 194 (394)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc--cccHHH
Confidence 4468999999999999999999999999864 378889999999999999998763 223322 224889
Q ss_pred HHHHhhhhhhhcCCCHH--HHHHHHHhhccccCCCC
Q 001386 75 EIRKQNFFEALDGHDIA--KALNILKKDLKDFAPGN 108 (1088)
Q Consensus 75 ~l~~q~~lEll~~~~~~--~a~~~l~~~l~~~~~~~ 108 (1088)
.|..+.|++++..|... +|+...|+.++|+....
T Consensus 195 ~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~ 230 (394)
T KOG2817|consen 195 KLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADH 230 (394)
T ss_pred HHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccch
Confidence 99999999999998877 99999999999996443
No 378
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.13 E-value=0.1 Score=57.40 Aligned_cols=83 Identities=8% Similarity=0.019 Sum_probs=57.5
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEE-EcCCC----------------Cc-EEEE
Q 001386 797 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLA-FNPHD----------------NN-VIAI 857 (1088)
Q Consensus 797 ~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~-~sp~d----------------~~-~las 857 (1088)
....+.+++.+|++++.|+.+ -|.|.++|+.++..++..++-.+.-..-. ..... .. +++.
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 445688999999999888876 48999999999988888776554321111 10001 11 3445
Q ss_pred EeCCCeEEEEEcCCceeeeeec
Q 001386 858 GMDDSTILIYNARSSEVISKLE 879 (1088)
Q Consensus 858 g~~dg~i~lwd~~~~~~~~~l~ 879 (1088)
+-.-|.|.||++++|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 6678899999999887766554
No 379
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0021 Score=70.69 Aligned_cols=94 Identities=20% Similarity=0.380 Sum_probs=73.3
Q ss_pred CCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeE-EEEECCCCCEEEE
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN-RVVWSPDGSLLGV 413 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~-~l~~s~dg~~las 413 (1088)
..|..+.|+|.-. ++|.+..+|.|.+..++ -+++.+ +.-|+..++ +++|.|||+.||+
T Consensus 21 ~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRlwt-------------------ip~p~~~v~~sL~W~~DGkllaV 79 (665)
T KOG4640|consen 21 INIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRLWT-------------------IPIPGENVTASLCWRPDGKLLAV 79 (665)
T ss_pred cceEEEEEcCccc-hhheeccCCcEEEEEec-cceeEe-------------------ccCCCCccceeeeecCCCCEEEE
Confidence 4789999999988 89999999999998887 444433 333666676 9999999999999
Q ss_pred EeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecC
Q 001386 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA 451 (1088)
Q Consensus 414 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~ 451 (1088)
|-.||+|++-|+++|..+... ...-...|.++-|.+
T Consensus 80 g~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 80 GFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWDR 115 (665)
T ss_pred EecCCeEEEEEccCCCceecc--ccccccchheeeccc
Confidence 999999999999998765532 223345677777763
No 380
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.10 E-value=0.036 Score=60.57 Aligned_cols=181 Identities=11% Similarity=0.128 Sum_probs=102.4
Q ss_pred CCEEEEEeC-----------CcEEEEEcCCc----eeEEEe--cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc
Q 001386 810 DAYLFSASG-----------GVISLYIVMTF----KTILTI--MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 872 (1088)
Q Consensus 810 g~~l~~~~d-----------g~i~iwd~~~~----~~~~~~--~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~ 872 (1088)
..++++|.. |.|.++++... ..+..+ ....++|++++-- +++ |+++. .+.|++|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCc
Confidence 567887741 77999999884 122221 2245788888776 344 44443 578999999887
Q ss_pred e-eeeeecc-ccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE
Q 001386 873 E-VISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 950 (1088)
Q Consensus 873 ~-~~~~l~~-h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~ 950 (1088)
+ .+..-.- ....+.++.. .+.+++.|+....+.++..+..... ...+..-... ..++++.|-+|++.++++
T Consensus 118 ~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~-l~~va~d~~~----~~v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 118 KTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNK-LILVARDYQP----RWVTAAEFLVDEDTIIVG 190 (321)
T ss_dssp SSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE--EEEEEEESS-----BEEEEEEEE-SSSEEEEE
T ss_pred ccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCE-EEEEEecCCC----ccEEEEEEecCCcEEEEE
Confidence 7 4332221 2224555544 4669999998888888866542211 1122211111 258899998776655554
Q ss_pred -eCCeEEEEEcCc-------ce-eeeeeecCC-CcCEEEE---EEee--CCC------EEEEEeCCCcEEEE
Q 001386 951 -HETHLAIYEAEE-------LT-CLKQWFPIS-SVPISQA---TFSC--DCR------MVFTSFVDGTLSIH 1001 (1088)
Q Consensus 951 -~d~~i~vwd~~~-------~~-~~~~~~~~h-~~~v~~l---~fs~--dg~------~l~s~s~dg~v~vw 1001 (1088)
.+|.+.++.... +. .+.....-| +..|+++ .+.| .+. .++.++.+|.|.+.
T Consensus 191 D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 191 DKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp ETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 668899887762 11 222212122 5677777 4445 222 37788899998843
No 381
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.05 E-value=0.25 Score=51.37 Aligned_cols=206 Identities=17% Similarity=0.131 Sum_probs=114.4
Q ss_pred CeEEEEEcCCCCcEEEEEe---CCCeEEEEEcCCceeeee-eccccCCeeEEEECCCCCEEEEEeCCCcEEEEE-cCCCc
Q 001386 841 TATSLAFNPHDNNVIAIGM---DDSTILIYNARSSEVISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD-VDGWG 915 (1088)
Q Consensus 841 ~i~~l~~sp~d~~~lasg~---~dg~i~lwd~~~~~~~~~-l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd-~~~~~ 915 (1088)
.+.+.++++ +++.+|... ....++++... ..... +.+. .+..-.|++++...+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGG--SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCC--ccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688999999 666665544 33355555433 32222 2333 678889999988877777677777774 23322
Q ss_pred eeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEe----CCeEEEEEcC---cc--eeee---eeecCCCcCEEEEEEe
Q 001386 916 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAE---EL--TCLK---QWFPISSVPISQATFS 983 (1088)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~----d~~i~vwd~~---~~--~~~~---~~~~~h~~~v~~l~fs 983 (1088)
.. ...+...... ..|..+.+||||..+|... +++|.+--+. .+ ..+. .........++.+.|.
T Consensus 100 ~~-~~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 100 GE-PVEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred ce-eEEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence 11 1112222111 1599999999999999843 5677766543 33 1111 1111225688999999
Q ss_pred eCCCEEEEEeCCCc-EEE-EEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 001386 984 CDCRMVFTSFVDGT-LSI-HEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1061 (1088)
Q Consensus 984 ~dg~~l~s~s~dg~-v~v-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~~ 1061 (1088)
+++.+++.+...+. +.. .....+.. ..+. .. ......++++-++ .. +.+.+++.+.- ...+.
T Consensus 175 ~~~~L~V~~~~~~~~~~~~v~~dG~~~-~~l~-~~-------~~~~~v~a~~~~~---~~-~~~t~~~~~~~---~~~~~ 238 (253)
T PF10647_consen 175 DDSTLVVLGRSAGGPVVRLVSVDGGPS-TPLP-SV-------NLGVPVVAVAASP---ST-VYVTDDGGVLQ---SRSGA 238 (253)
T ss_pred CCCEEEEEeCCCCCceeEEEEccCCcc-cccC-CC-------CCCcceEEeeCCC---cE-EEEECCCcEEE---CCCCC
Confidence 99988776654433 333 33333321 1110 00 1112233444343 33 44555665554 66777
Q ss_pred CccccCCCCcc
Q 001386 1062 TWAVLPPDEIV 1072 (1088)
Q Consensus 1062 ~~~~~~~~~~~ 1072 (1088)
.|...+.....
T Consensus 239 ~W~~v~~~~~~ 249 (253)
T PF10647_consen 239 SWREVPGGVGD 249 (253)
T ss_pred cceEccCCCCC
Confidence 78776655543
No 382
>PRK10115 protease 2; Provisional
Probab=97.04 E-value=1 Score=54.46 Aligned_cols=245 Identities=9% Similarity=0.032 Sum_probs=122.5
Q ss_pred CCeEEEEECCCCCEEEEEeCC-----CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCC-----Cc
Q 001386 397 VSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KT 466 (1088)
Q Consensus 397 ~~V~~l~~s~dg~~las~~~d-----g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d-----~~ 466 (1088)
-.+..+.|||||++||.+.+. ..|++-|+.+|+.+.. .+.+ .-..++|++|++.+ +++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~---~~~~~~w~~D~~~~-~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN---VEPSFVWANDSWTF-YYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC---cceEEEEeeCCCEE-EEEEecCCCCCCCE
Confidence 346678999999999987432 3589999998864321 1222 11469999999863 3333222 36
Q ss_pred EEEEeCCCC--ceeEEeccCCccEEEEeeeeeCCceEEEEEecC---CeEEEEECCC--CCceEEecCCCCceEEEEEcc
Q 001386 467 IKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDS--LGARVDYDAPGLGCTRMAYSA 539 (1088)
Q Consensus 467 i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~--~~~~~~~~~~~~~v~~~~~s~ 539 (1088)
|..+++.++ +....+........ +......++.+++..+.. +.+.+++.+. ................+. .
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~ 277 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD--H 277 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE--e
Confidence 788888888 33334443333333 222224355555544433 4688888533 222222222222222222 2
Q ss_pred CCCEEEEEeeCCCCceeEEEEeCC-CCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCC-CeeeEEEe
Q 001386 540 NGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTID 617 (1088)
Q Consensus 540 ~g~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~ 617 (1088)
.+..+...+..+.....|...++. .++. ..+..+. ....+..+.+.. +..+++...+|.-+++-+.. +..+..+.
T Consensus 278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~-~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPR-ENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTREVIGIA 354 (686)
T ss_pred CCCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCC-CCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCCceEEec
Confidence 234444444333334455555655 2322 2333331 123677777773 34555566677655554432 23334433
Q ss_pred CCCCCCCCceEEEe--cCCC-EEEEEeC---CCcEEEEeCCCC
Q 001386 618 AGGGLPENPRICFN--KNGT-LLAVIAN---ENRIKILETPES 654 (1088)
Q Consensus 618 ~~~~~~~v~~v~~s--~~~~-~l~~~~~---dg~i~iwd~~~~ 654 (1088)
.... ..+..+.++ +++. ++++.++ -+.+..+|..++
T Consensus 355 ~~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 355 FDDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CCCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 1111 012222333 3333 3333332 366777777664
No 383
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.03 E-value=0.16 Score=55.94 Aligned_cols=84 Identities=12% Similarity=0.244 Sum_probs=58.2
Q ss_pred CceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCC-----------------CE
Q 001386 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-----------------DQ 592 (1088)
Q Consensus 530 ~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------~~ 592 (1088)
..+.+++.+|++++.++. |.-+.|.++|+.++..++..+|.. ...+.-+.....+ .+
T Consensus 308 R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYR--dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYR--DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred ceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCc--cceEEEEEeecccccccccccccCCCCcceEE
Confidence 357789999998877764 446679999999999999998876 2222211111111 12
Q ss_pred EE-EEeCCCcEEEEEcCCCeeeEEEeCC
Q 001386 593 IL-AAGDDHVIKIWDMNKVQLLTTIDAG 619 (1088)
Q Consensus 593 l~-~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1088)
|+ -+-.-|.|.||++++|..+..+...
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 22 2567899999999999988887653
No 384
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.01 E-value=0.089 Score=57.43 Aligned_cols=178 Identities=11% Similarity=0.029 Sum_probs=101.9
Q ss_pred CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC----CCEEEEEeC----------CCEEEE
Q 001386 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD----GSLLGVAYS----------KHIVQL 422 (1088)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d----g~~las~~~----------dg~i~v 422 (1088)
+.|+|.|..+.+.+....+. -..+-..+..+.|..+ ..+|++|+. .|.|.+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~---------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v 66 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELE---------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILV 66 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEE---------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEE
T ss_pred cEEEEEeCCCCeEEEEEECC---------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEE
Confidence 45788888888877654432 0111123334445443 578888752 288999
Q ss_pred EEccCC----CcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc-eeEEe-ccCCccEEEEeeeee
Q 001386 423 YAYHGG----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSF-EGHGAPVYSLCPHAK 496 (1088)
Q Consensus 423 wd~~~~----~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~-~~~~~-~~~~~~v~~~~~~~~ 496 (1088)
+++... ..++.... ....++|++++-- ++. ++.+. .+.|.+|++...+ ....- ......+.++.. .
T Consensus 67 ~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~---lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~ 138 (321)
T PF03178_consen 67 FEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR---LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--F 138 (321)
T ss_dssp EEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE---EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--E
T ss_pred EEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE---EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec--c
Confidence 999984 22332222 2457889998766 333 33333 4789999998887 43222 212335666654 2
Q ss_pred CCceEEEEEecCCeEEEEECCCCCc-eE--EecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC
Q 001386 497 ENIHFIFSISVDGKIKAWLYDSLGA-RV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1088)
Q Consensus 497 ~~~~~l~s~~~dg~i~iwd~~~~~~-~~--~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 563 (1088)
+ .+++.|...+.+.++.++.... .. .-......++++.|-++++.++++- ..+.+.++...
T Consensus 139 ~--~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D----~~gnl~~l~~~ 202 (321)
T PF03178_consen 139 K--NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD----KDGNLFVLRYN 202 (321)
T ss_dssp T--TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE----TTSEEEEEEE-
T ss_pred c--cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc----CCCeEEEEEEC
Confidence 2 4899999888888876654332 22 2223345688888887777555553 24446665443
No 385
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0035 Score=69.02 Aligned_cols=92 Identities=15% Similarity=0.286 Sum_probs=78.6
Q ss_pred CCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeE-EEEEcCCCCcEEEEEeCCCeEEEEEcCCceee
Q 001386 798 QEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTAT-SLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 875 (1088)
Q Consensus 798 ~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~-~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~ 875 (1088)
...+.-+.|+|.-.++|.+. +|.+.+..++ .+.+.++..|...++ +++|.| ||++||+|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 45677899999999999997 8999999998 899999998887777 999999 8999999999999999999998877
Q ss_pred eeec-cccCCeeEEEEC
Q 001386 876 SKLE-GHSKRVTGLVFS 891 (1088)
Q Consensus 876 ~~l~-~h~~~V~~l~~s 891 (1088)
..+. .-..+|.++.|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 6532 244567788886
No 386
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.97 E-value=0.002 Score=43.89 Aligned_cols=39 Identities=36% Similarity=0.622 Sum_probs=34.7
Q ss_pred ceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEE
Q 001386 872 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 910 (1088)
Q Consensus 872 ~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd 910 (1088)
++.+..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778999999999999999999999999999996
No 387
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.95 E-value=0.27 Score=53.61 Aligned_cols=241 Identities=12% Similarity=0.114 Sum_probs=122.0
Q ss_pred CeeEEEEecCCCEEEEEeCCcEEEEEcCCcee---EEEe----cCCCCCeEEEEEcCC---CCcEEEEEeCC--------
Q 001386 800 AVPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTI----MPPSPTATSLAFNPH---DNNVIAIGMDD-------- 861 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~---~~~~----~~~~~~i~~l~~sp~---d~~~lasg~~d-------- 861 (1088)
..++|+|.|||+++++-..|.|++++ ..+.. +..+ .........++++|+ ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 46789999999998887799999999 44443 2222 123356799999992 24444444422
Q ss_pred CeEEEEEcCCc-------e-eeeeecc---ccCCeeEEEECCCCCEEEEEeCCCc-----------EEEEEcCC-Cceee
Q 001386 862 STILIYNARSS-------E-VISKLEG---HSKRVTGLVFSDALNILVSSGGDAQ-----------IFVWDVDG-WGIQT 918 (1088)
Q Consensus 862 g~i~lwd~~~~-------~-~~~~l~~---h~~~V~~l~~s~dg~~las~s~Dg~-----------i~iwd~~~-~~~~~ 918 (1088)
..|.-|....+ + ++..+.. .......|+|.|||.+.++.+..+. =+|+.++. ++...
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~ 161 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPA 161 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCC
Confidence 24444544433 1 1222222 2233467999999988777765442 01122211 00000
Q ss_pred eeeee---------cCCCCccCCCCeEEEEEcCC-CCEEEE--EeCCeEEEEEcCcceee--------------------
Q 001386 919 CRSLQ---------TPDGVMTLAPSETHIQFHKD-QTRFLL--VHETHLAIYEAEELTCL-------------------- 966 (1088)
Q Consensus 919 ~~~~~---------~~~~~~~~~~~v~~~~fs~d-g~~l~~--~~d~~i~vwd~~~~~~~-------------------- 966 (1088)
..... ...|. .-...++|.|. |++.++ +.+..=.|--+..|.--
T Consensus 162 dnP~~~~~~~~~~i~A~Gl----RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 162 DNPFVGDDGADSEIYAYGL----RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp TSTTTTSTTSTTTEEEE------SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCccccCCCceEEEEEeCC----CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 00000 00011 12568999999 777776 44433222222222110
Q ss_pred -------eeeecCCCcCEEEEEEee-------CCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEE
Q 001386 967 -------KQWFPISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAI 1032 (1088)
Q Consensus 967 -------~~~~~~h~~~v~~l~fs~-------dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1088)
..+...+...+..+.|-. .|.++++.-..+.|....+.++.......... . ....++..+
T Consensus 238 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~---~~~~r~~~v 311 (331)
T PF07995_consen 238 SCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFL---G---GFGGRPRDV 311 (331)
T ss_dssp S-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEEC---T---TSSS-EEEE
T ss_pred CCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEcc---c---cCCCCceEE
Confidence 000112345666777754 45566655556677777777554332222111 1 112256789
Q ss_pred EECCCCCCEEEEEeCCCcEE
Q 001386 1033 AAHPLKPTQFAVGLTNGEVY 1052 (1088)
Q Consensus 1033 ~~~p~d~~~l~~~~~dg~v~ 1052 (1088)
++.| ||.++++...+|.|+
T Consensus 312 ~~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 312 AQGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp EEET-TSEEEEEE-TTTTEE
T ss_pred EEcC-CCeEEEEECCCCeEe
Confidence 9999 899999988899875
No 388
>PRK10115 protease 2; Provisional
Probab=96.93 E-value=1.6 Score=52.72 Aligned_cols=244 Identities=10% Similarity=0.009 Sum_probs=122.1
Q ss_pred CceeeeecCCCCeEEEEEcccC----cEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEE
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 411 (1088)
.+..+.+||||++++.+.+.+| +|++-|+.+|+.+... +. ..-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~------------------i~---~~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL------------------LD---NVEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc------------------cc---CcceEEEEeeCCCEE
Confidence 5778899999996544444433 5889999888644210 11 111459999999888
Q ss_pred EEEeCC------CEEEEEEccCCCcccceeEeccCCCCEE-EEEecCCCCcEEEEEEe-CCCcEEEEeCC--CCceeEEe
Q 001386 412 GVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVN-DLAFSAPCKQISVITCG-DDKTIKVWDAV--TGSRTYSF 481 (1088)
Q Consensus 412 as~~~d------g~i~vwd~~~~~~~~~~~~~~~h~~~v~-~~~~s~d~~~l~l~s~s-~d~~i~vwd~~--~~~~~~~~ 481 (1088)
+.+..+ ..|..+++.++..-.. ..+........ .+..+.|++.+++.+.+ .++.+.+++.. ++.....+
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~-lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 265 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDE-LVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL 265 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCe-EEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE
Confidence 776542 3578888888731111 12333233333 33445588853322222 23578888843 34432222
Q ss_pred ccCCccEEEEeeeeeCCceEEEEEecC---CeEEEEECCC-CCceEEecC-CCCceEEEEEccCCCEEEEEeeCCCCcee
Q 001386 482 EGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDS-LGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1088)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~-~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 556 (1088)
....+....+. + . ++.+++....+ ..|...++.. .+....+.. ....+..+.+. ++.|+..... .+...
T Consensus 266 ~~~~~~~~~~~-~-~-~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~-~g~~~ 339 (686)
T PRK10115 266 PRRKDHEYSLD-H-Y-QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQ-RGLTS 339 (686)
T ss_pred ECCCCCEEEEE-e-C-CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEe-CCEEE
Confidence 22222222222 1 1 22333332222 2344444442 222223333 23367777776 4455544432 44666
Q ss_pred EEEEeCCCCceeEEEe-ccccccccEEEEEEe--CCCC-EEEEEe---CCCcEEEEEcCCCe
Q 001386 557 LVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFD--TAKD-QILAAG---DDHVIKIWDMNKVQ 611 (1088)
Q Consensus 557 i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~--~~~~-~l~~~s---~dg~i~iwd~~~~~ 611 (1088)
+++++..++. +..+. ... ..+..+.++ +++. .+++.+ .-+.+..+|..+++
T Consensus 340 l~~~~~~~~~-~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 340 LRQINRKTRE-VIGIAFDDP---AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEcCCCCc-eEEecCCCC---ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 8888865443 33332 111 123333344 3444 333332 34678888887764
No 389
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.90 E-value=0.024 Score=66.88 Aligned_cols=146 Identities=12% Similarity=0.101 Sum_probs=98.2
Q ss_pred CCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCcc-EEEEeeeee---CCceEEEEEecCCeEEEEECCCCCceEE----
Q 001386 453 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP-VYSLCPHAK---ENIHFIFSISVDGKIKAWLYDSLGARVD---- 524 (1088)
Q Consensus 453 ~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~---- 524 (1088)
.+.++|........|+-.|+++|+.+..+..|... |..++.... -+..-.+.|-.+..+..||.+-......
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 34434555556688999999999999999887654 776654211 0123467788888999999987543221
Q ss_pred -ecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEE
Q 001386 525 -YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 603 (1088)
Q Consensus 525 -~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 603 (1088)
.-.......|++-+.+| +||+|+. .|.|++||.-..+....+.+.. .+|..+..+.||+++++.+. ..+.
T Consensus 572 k~Y~~~~~Fs~~aTt~~G-~iavgs~----~G~IRLyd~~g~~AKT~lp~lG---~pI~~iDvt~DGkwilaTc~-tyLl 642 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG-YIAVGSN----KGDIRLYDRLGKRAKTALPGLG---DPIIGIDVTADGKWILATCK-TYLL 642 (794)
T ss_pred cccccCCCceEEEecCCc-eEEEEeC----CCcEEeecccchhhhhcCCCCC---CCeeEEEecCCCcEEEEeec-ceEE
Confidence 11233467788877777 5555654 3449999954444444455555 89999999999999988774 4555
Q ss_pred EEEc
Q 001386 604 IWDM 607 (1088)
Q Consensus 604 iwd~ 607 (1088)
+++.
T Consensus 643 Li~t 646 (794)
T PF08553_consen 643 LIDT 646 (794)
T ss_pred EEEE
Confidence 6554
No 390
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.018 Score=62.13 Aligned_cols=144 Identities=9% Similarity=0.107 Sum_probs=102.5
Q ss_pred EEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCE--E-----EEEeCCCcEEEEEcCCCceeeeeeeecCC
Q 001386 854 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNI--L-----VSSGGDAQIFVWDVDGWGIQTCRSLQTPD 926 (1088)
Q Consensus 854 ~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~--l-----as~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 926 (1088)
++.++.....++--|++.|+.+..++-|.. |+-+.+.|+.+. | +.|=.|..|.-||..-..... +....
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k---l~~~q 423 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK---LAVVQ 423 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcce---eeeee
Confidence 444555566789999999999999998877 777888886532 2 124457778889987433211 11112
Q ss_pred CCcc-CCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 001386 927 GVMT-LAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1003 (1088)
Q Consensus 927 ~~~~-~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~ 1003 (1088)
++.- ......|.+-..+|..++.+.+|.|++||- .+....+.+++-+.+|..+..+.||++|+.. .+.++.+-++
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t 499 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDT 499 (644)
T ss_pred ccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEEE
Confidence 2211 112366777778888777789999999997 7888888888889999999999999998854 4666666654
No 391
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.88 E-value=0.072 Score=45.63 Aligned_cols=68 Identities=19% Similarity=0.332 Sum_probs=49.1
Q ss_pred eEEEEEcC---CCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 001386 842 ATSLAFNP---HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 913 (1088)
Q Consensus 842 i~~l~~sp---~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~ 913 (1088)
|+++++.. ++.+-|++|+.|..|++|+-. +.+..+.. .+.|++++-... ..++.+-.+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc
Confidence 55666544 234689999999999999744 56666663 455788777766 5678888999998887644
No 392
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.88 E-value=0.19 Score=54.30 Aligned_cols=238 Identities=11% Similarity=0.087 Sum_probs=112.6
Q ss_pred CCceEEEec-cccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe---C--
Q 001386 745 GGQAIFALA-SNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---G-- 818 (1088)
Q Consensus 745 ~g~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~---d-- 818 (1088)
+.++|+..+ ..+.|.|.|+.+... .+++..+.....+... ..-.....+..-|+|..++++- +
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr------~P~l~KvIe~~ev~~k-----~g~s~PHT~Hclp~G~imIS~lGd~~G~ 154 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPR------KPRLHKVIEPEEVFEK-----TGLSRPHTVHCLPDGRIMISALGDADGN 154 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TT------S-EEEEEE-HHHHHHH-----H-EEEEEEEEE-SS--EEEEEEEETTS-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCC------CCceEeeeCHHHHHhh-----cCCCCCceeeecCCccEEEEeccCCCCC
Confidence 455666655 678999999876544 3333332222111100 0011223345567998888873 2
Q ss_pred --CcEEEEEcCCceeEEEecCCCC---CeEEEEEcCCCCcEEEEEeC--------------------CCeEEEEEcCCce
Q 001386 819 --GVISLYIVMTFKTILTIMPPSP---TATSLAFNPHDNNVIAIGMD--------------------DSTILIYNARSSE 873 (1088)
Q Consensus 819 --g~i~iwd~~~~~~~~~~~~~~~---~i~~l~~sp~d~~~lasg~~--------------------dg~i~lwd~~~~~ 873 (1088)
|.+.++|-++.+.......... .-..+-+.| ..+.+++... ..++.+||+.+.+
T Consensus 155 g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~ 233 (461)
T PF05694_consen 155 GPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK 233 (461)
T ss_dssp S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE
T ss_pred CCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc
Confidence 4589999998888777654332 335677788 6777777532 3489999999999
Q ss_pred eeeeecccc--CCeeEEEECC--CCCE-EEEEeCCCcEEEE-EcCCCceeeeeeeecCCCCc------c-------CCCC
Q 001386 874 VISKLEGHS--KRVTGLVFSD--ALNI-LVSSGGDAQIFVW-DVDGWGIQTCRSLQTPDGVM------T-------LAPS 934 (1088)
Q Consensus 874 ~~~~l~~h~--~~V~~l~~s~--dg~~-las~s~Dg~i~iw-d~~~~~~~~~~~~~~~~~~~------~-------~~~~ 934 (1088)
.++++.--. ....-|.|.. +..+ ++.+.-..+|..| .-+.++-.....+....... . ...-
T Consensus 234 ~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~L 313 (461)
T PF05694_consen 234 LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPL 313 (461)
T ss_dssp EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE---
T ss_pred EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCc
Confidence 998886422 2345677754 4444 3333344444444 33555544444554443210 0 0135
Q ss_pred eEEEEEcCCCCEEEEE--eCCeEEEEEcCcce---eeeeeecCC---------------CcCEEEEEEeeCCCEEEEEeC
Q 001386 935 ETHIQFHKDQTRFLLV--HETHLAIYEAEELT---CLKQWFPIS---------------SVPISQATFSCDCRMVFTSFV 994 (1088)
Q Consensus 935 v~~~~fs~dg~~l~~~--~d~~i~vwd~~~~~---~~~~~~~~h---------------~~~v~~l~fs~dg~~l~s~s~ 994 (1088)
|+.+..|.|.++|.++ ..|.|+.||++... ...+...+- .+...-+..|-||+.|.+.++
T Consensus 314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp ---EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred eEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 7999999999999996 57899999998643 333322220 234577889999998876543
No 393
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.74 E-value=0.18 Score=52.36 Aligned_cols=147 Identities=18% Similarity=0.155 Sum_probs=91.9
Q ss_pred CCeeEEEEecCCCEEEEEe--CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEE-cCCceee
Q 001386 799 EAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN-ARSSEVI 875 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd-~~~~~~~ 875 (1088)
..+.+.++|+|++.+|... ++.-.+|-...+.....+. ....++...|++ ++.+.+....+...+++. ..+++..
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcce
Confidence 3688899999999888766 5554444444444333332 234788889999 677777777677667763 3333321
Q ss_pred -eeecc--ccCCeeEEEECCCCCEEEEEe---CCCcEEEEEcCCCcee----eeeeeecCCCCccCCCCeEEEEEcCCCC
Q 001386 876 -SKLEG--HSKRVTGLVFSDALNILVSSG---GDAQIFVWDVDGWGIQ----TCRSLQTPDGVMTLAPSETHIQFHKDQT 945 (1088)
Q Consensus 876 -~~l~~--h~~~V~~l~~s~dg~~las~s---~Dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~fs~dg~ 945 (1088)
..+.. -.+.|..+.+||||..+|... .++.|.+=-+...... ....+..... ....+..++|.+++.
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~---~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPP---LLSDVTDVAWSDDST 178 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccc---ccCcceeeeecCCCE
Confidence 11221 122899999999999988766 3577777766533221 1111122211 123689999999999
Q ss_pred EEEEE
Q 001386 946 RFLLV 950 (1088)
Q Consensus 946 ~l~~~ 950 (1088)
+++.+
T Consensus 179 L~V~~ 183 (253)
T PF10647_consen 179 LVVLG 183 (253)
T ss_pred EEEEe
Confidence 88884
No 394
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.73 E-value=1 Score=49.03 Aligned_cols=68 Identities=16% Similarity=0.154 Sum_probs=39.7
Q ss_pred cEEEEEEeC-------CCCEEEEEeCCCcEEEEEcCCCeeeE-EEeCCCCC-CCCceEEEecCCCEEEEEeCCCcEE
Q 001386 580 SVSVVHFDT-------AKDQILAAGDDHVIKIWDMNKVQLLT-TIDAGGGL-PENPRICFNKNGTLLAVIANENRIK 647 (1088)
Q Consensus 580 ~v~~~~~~~-------~~~~l~~~s~dg~i~iwd~~~~~~~~-~~~~~~~~-~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1088)
.+..+.|.. .|.++++.-..+.|....+..+..+. ....-... ..+..+++.|||.+.++...+|.|.
T Consensus 254 ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 254 APTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp -EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred ccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 455666653 34455555556777777776443322 22211222 2578999999999888888788764
No 395
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.66 E-value=1.1 Score=47.22 Aligned_cols=157 Identities=12% Similarity=0.058 Sum_probs=82.9
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCce
Q 001386 837 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI 916 (1088)
Q Consensus 837 ~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~ 916 (1088)
...+.+..+..++ |+++++++..-....-||--...-...-..-..+|.++.|+||+.+.+.+ ..|.|+.=+.....
T Consensus 142 ~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~- 218 (302)
T PF14870_consen 142 ETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG- 218 (302)
T ss_dssp S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE-
T ss_pred CCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc-
Confidence 3456788888898 89999888655555567654221111122245789999999998876644 88888887722211
Q ss_pred eeeeeeecCC-CCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeec--CCCcCEEEEEEeeCCCEEEEEe
Q 001386 917 QTCRSLQTPD-GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFP--ISSVPISQATFSCDCRMVFTSF 993 (1088)
Q Consensus 917 ~~~~~~~~~~-~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~--~h~~~v~~l~fs~dg~~l~s~s 993 (1088)
....... ......-.+..++|.+++...|++..+.+. .....|+.-..-.. .-......+.|..+.+-++ .+
T Consensus 219 ---~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG 293 (302)
T PF14870_consen 219 ---ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LG 293 (302)
T ss_dssp ---EEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-
T ss_pred ---cccccccCCcccCceeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEE-EC
Confidence 1111100 000111247899999999999998888653 44555554443322 2256788999987755555 45
Q ss_pred CCCcEEEE
Q 001386 994 VDGTLSIH 1001 (1088)
Q Consensus 994 ~dg~v~vw 1001 (1088)
.+|.+.-|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 78887655
No 396
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.038 Score=59.84 Aligned_cols=144 Identities=10% Similarity=0.086 Sum_probs=95.9
Q ss_pred CCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceE-----EEEEecCCeEEEEECCCCCc-eE-Ee
Q 001386 453 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF-----IFSISVDGKIKAWLYDSLGA-RV-DY 525 (1088)
Q Consensus 453 ~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----l~s~~~dg~i~iwd~~~~~~-~~-~~ 525 (1088)
...+++.++.....++-.|++.|+.+..+..+.. |+-+.+.+...+.. -+.|-.|..|.-||.+-... .. ..
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 3444677777778899999999999999987766 55555554433322 34566788899999885443 11 11
Q ss_pred cC----CCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCc
Q 001386 526 DA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 601 (1088)
Q Consensus 526 ~~----~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~ 601 (1088)
.. ......|.+-..+| ++++++..++ |++||.-.......+++.. .+|..+..+.+|+++++.+. ..
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~Gd----IRLYdri~~~AKTAlPgLG---~~I~hVdvtadGKwil~Tc~-ty 493 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGD----IRLYDRIGRRAKTALPGLG---DAIKHVDVTADGKWILATCK-TY 493 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCc----EEeehhhhhhhhhcccccC---CceeeEEeeccCcEEEEecc-cE
Confidence 11 12245666666666 5666665443 9999974444445566666 89999999999999888764 34
Q ss_pred EEEEE
Q 001386 602 IKIWD 606 (1088)
Q Consensus 602 i~iwd 606 (1088)
+.+-+
T Consensus 494 LlLi~ 498 (644)
T KOG2395|consen 494 LLLID 498 (644)
T ss_pred EEEEE
Confidence 44444
No 397
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.41 E-value=0.0094 Score=40.33 Aligned_cols=39 Identities=31% Similarity=0.443 Sum_probs=33.5
Q ss_pred ceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 001386 829 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN 868 (1088)
Q Consensus 829 ~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd 868 (1088)
++....+..|...+.++.|.+ ++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 345666777888999999999 778999999999999996
No 398
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.39 E-value=1.4 Score=44.96 Aligned_cols=186 Identities=9% Similarity=0.098 Sum_probs=114.7
Q ss_pred CCeeEEEEecCCCEEEEEe-C--CcEEEEEcCCceeEEEecCCC-CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee
Q 001386 799 EAVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 874 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~-d--g~i~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~ 874 (1088)
.-...+.|..+|.++-+.+ . ..|+.+|+.+++......-+. ----.++.. ++++...--.++...+||..+-+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence 3456788888888877776 3 469999999998876654333 233455555 456777778899999999999998
Q ss_pred eeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCC
Q 001386 875 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HET 953 (1088)
Q Consensus 875 ~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~ 953 (1088)
+.++.- .+.=..++ .||+.|+.......|.++|-.+-+......+... +... ..+.-+-+- +|...|-. ...
T Consensus 123 ~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~-g~pv--~~LNELE~i-~G~IyANVW~td 195 (264)
T PF05096_consen 123 IGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDN-GRPV--SNLNELEYI-NGKIYANVWQTD 195 (264)
T ss_dssp EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EET-TEE-----EEEEEEE-TTEEEEEETTSS
T ss_pred EEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEEC-CEEC--CCcEeEEEE-cCEEEEEeCCCC
Confidence 888863 45567777 4666676666666788898876543332222211 1111 235556664 56655554 556
Q ss_pred eEEEEEcCcceeeeeeecC-----------C---CcCEEEEEEeeCCCEEEEEe
Q 001386 954 HLAIYEAEELTCLKQWFPI-----------S---SVPISQATFSCDCRMVFTSF 993 (1088)
Q Consensus 954 ~i~vwd~~~~~~~~~~~~~-----------h---~~~v~~l~fs~dg~~l~s~s 993 (1088)
.|...|..+|++...+-.. + ..-...+|+.|.+..+.+.+
T Consensus 196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 7888899999988764210 1 34578899988766555443
No 399
>PHA02713 hypothetical protein; Provisional
Probab=96.33 E-value=0.27 Score=57.83 Aligned_cols=195 Identities=9% Similarity=-0.026 Sum_probs=102.2
Q ss_pred CCcEEEEEeCC------CeEEEEEcCCcee--eeeeccccCCeeEEEECCCCCEEEEEeCCC-----cEEEEEcCCCcee
Q 001386 851 DNNVIAIGMDD------STILIYNARSSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGDA-----QIFVWDVDGWGIQ 917 (1088)
Q Consensus 851 d~~~lasg~~d------g~i~lwd~~~~~~--~~~l~~h~~~V~~l~~s~dg~~las~s~Dg-----~i~iwd~~~~~~~ 917 (1088)
++.+.++|+.+ ..+..||..+..- +..+.........+ .-+|++.+.||.++ ++..||..+.+-.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 67788888854 3578899877642 22222112222222 23678888888764 4788998875432
Q ss_pred eeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEe-C-----------------------CeEEEEEcCcceeeeeeecCC
Q 001386 918 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH-E-----------------------THLAIYEAEELTCLKQWFPIS 973 (1088)
Q Consensus 918 ~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~-d-----------------------~~i~vwd~~~~~~~~~~~~~h 973 (1088)
....+...... . .+..-+|+..+.|+ + ..+..||..+.+-...... .
T Consensus 381 ~~~~mp~~r~~------~--~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m-~ 451 (557)
T PHA02713 381 MLPDMPIALSS------Y--GMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF-W 451 (557)
T ss_pred ECCCCCccccc------c--cEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC-C
Confidence 22221111111 1 12233677766642 2 2477888776543211111 1
Q ss_pred CcCEEEEEEeeCCCEEEEEeCC------CcEEEEEcCC-CceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEe
Q 001386 974 SVPISQATFSCDCRMVFTSFVD------GTLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1046 (1088)
Q Consensus 974 ~~~v~~l~fs~dg~~l~s~s~d------g~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~ 1046 (1088)
......-+..-+|+..+.|+.+ ..+..||..+ .+.... . .++.. .....++.. ++.+.++||
T Consensus 452 ~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~-~---~m~~~-----r~~~~~~~~--~~~iyv~Gg 520 (557)
T PHA02713 452 TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELI-T---TTESR-----LSALHTILH--DNTIMMLHC 520 (557)
T ss_pred cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEc-c---ccCcc-----cccceeEEE--CCEEEEEee
Confidence 1112222334467777777654 2467788887 454321 1 11111 111223333 579999999
Q ss_pred CCC--cEEEEeCCCCCCCccccCCC
Q 001386 1047 TNG--EVYVIEPNEPGDTWAVLPPD 1069 (1088)
Q Consensus 1047 ~dg--~v~~w~l~~~~~~~~~~~~~ 1069 (1088)
.|| ++..||+.. .+|....|-
T Consensus 521 ~~~~~~~e~yd~~~--~~W~~~~~~ 543 (557)
T PHA02713 521 YESYMLQDTFNVYT--YEWNHICHQ 543 (557)
T ss_pred ecceeehhhcCccc--ccccchhhh
Confidence 999 777788744 458755443
No 400
>PHA02713 hypothetical protein; Provisional
Probab=96.33 E-value=0.18 Score=59.19 Aligned_cols=202 Identities=7% Similarity=-0.035 Sum_probs=100.4
Q ss_pred CCCcEEEEEEeCC------CcEEEEeCCCCcee--EEeccCCccEEEEeeeeeCCceEEEEEecCC-----eEEEEECCC
Q 001386 452 PCKQISVITCGDD------KTIKVWDAVTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDS 518 (1088)
Q Consensus 452 d~~~l~l~s~s~d------~~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~ 518 (1088)
++. +++.||.+ ..+..||+.+..-. ..+.........+.+ ++...+.|+.++ .+..||..+
T Consensus 303 ~~~--IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~----~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 303 DNE--IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI----DDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred CCE--EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE----CCEEEEECCcCCCCCCceEEEEECCC
Confidence 455 55666643 34778888776432 111111111122222 556777787764 377888775
Q ss_pred CCceEEecCCCCceEEEEEccCCCEEEEEeeCCCC-------------------ceeEEEEeCCCCceeEEEeccccccc
Q 001386 519 LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG-------------------ESFLVEWNESEGAIKRTYQGLQLQHN 579 (1088)
Q Consensus 519 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~-------------------~~~i~iwd~~~~~~~~~~~~~~~~~~ 579 (1088)
..=...-..+.......+..-+|+..+.||.++.. ...+..||+.+.+-...-.-.. .
T Consensus 377 ~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~---~ 453 (557)
T PHA02713 377 DKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT---G 453 (557)
T ss_pred CeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc---c
Confidence 43222111111111111223367776766643211 2458889988775533222111 1
Q ss_pred cEEEEEEeCCCCEEEEEeCC------CcEEEEEcCC-CeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCC--cEEEEe
Q 001386 580 SVSVVHFDTAKDQILAAGDD------HVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--RIKILE 650 (1088)
Q Consensus 580 ~v~~~~~~~~~~~l~~~s~d------g~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--~i~iwd 650 (1088)
........-++...+.|+.+ ..+..||..+ .+....-...........+ .-++++.++|+.++ .+..||
T Consensus 454 r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~--~~~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 454 TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI--LHDNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE--EECCEEEEEeeecceeehhhcC
Confidence 11111122345555666643 2467899887 4544332222221111222 23688899999888 677788
Q ss_pred CCCCCccccccccc
Q 001386 651 TPESNSVDAAGVLS 664 (1088)
Q Consensus 651 ~~~~~~~~~~~~~~ 664 (1088)
..+.+.......|.
T Consensus 532 ~~~~~W~~~~~~~~ 545 (557)
T PHA02713 532 VYTYEWNHICHQHS 545 (557)
T ss_pred cccccccchhhhcC
Confidence 88776554444443
No 401
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.31 E-value=0.4 Score=48.63 Aligned_cols=172 Identities=7% Similarity=0.071 Sum_probs=112.8
Q ss_pred eccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEE
Q 001386 878 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLA 956 (1088)
Q Consensus 878 l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~ 956 (1088)
+.+-...|.+++|+|+.+.|++......-.||=...|+.....++..... ...+.+..+|.+.++ -.++.++
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~D-------pE~Ieyig~n~fvi~dER~~~l~ 153 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD-------PETIEYIGGNQFVIVDERDRALY 153 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCC-------hhHeEEecCCEEEEEehhcceEE
Confidence 44545569999999999999998888877777666766555544444332 346888888888888 4677888
Q ss_pred EEEcCcceeeeeee--------cCC-CcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccc
Q 001386 957 IYEAEELTCLKQWF--------PIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHV 1027 (1088)
Q Consensus 957 vwd~~~~~~~~~~~--------~~h-~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1027 (1088)
++.+..+....... ..+ +...-.++|+|.+..|+.+=.-.-+.|+.+..+.-.-..... ..+.. ...+
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~-~~~~~--~~~~ 230 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHAS-LDPTA--DRDL 230 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccc-cCccc--ccce
Confidence 88776553221111 112 667788999999999998888888888877644311111100 00000 1112
Q ss_pred cc---eEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Q 001386 1028 YP---HAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1059 (1088)
Q Consensus 1028 ~~---~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~ 1059 (1088)
+. ..+.|++..+++|+-+..++.+...++...
T Consensus 231 f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 231 FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred EeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 22 346788878899999988888888777443
No 402
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.27 E-value=0.37 Score=56.51 Aligned_cols=235 Identities=11% Similarity=0.016 Sum_probs=124.3
Q ss_pred CCCEEEEEeCC------CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCC------CcEEEEeCCC
Q 001386 407 DGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAVT 474 (1088)
Q Consensus 407 dg~~las~~~d------g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d------~~i~vwd~~~ 474 (1088)
.+..+++|+.+ ..+..+|..+++-.. ...+. +...-.+++... +. +.++||.| .++..||..+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCCC
Confidence 45566666665 358888888774221 11222 222233444443 44 77888888 3577888887
Q ss_pred CceeE--EeccCCccEEEEeeeeeCCceEEEEEecCCe-----EEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001386 475 GSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVDGK-----IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1088)
Q Consensus 475 ~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 547 (1088)
++-.. .+...........+ +|.+.+.|+.||. |-.||..+.+-...-.-....-..-...-+|+..++|
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred CceeccCCccCccccceeEEE----CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEc
Confidence 76332 12211111111111 6678899999875 6677766544322221222112222233467777777
Q ss_pred eeCCCCc--eeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCc-----EEEEEcCCCeeeEEEeCCC
Q 001386 548 GTSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-----IKIWDMNKVQLLTTIDAGG 620 (1088)
Q Consensus 548 ~~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-----i~iwd~~~~~~~~~~~~~~ 620 (1088)
|.++..+ ..+..||+.+.+....-.-.. ...... ++ .-++...+.|+.|+. |..||..+.+....-....
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNT-RRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCccc-ccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 7655432 678899998876543332222 001112 22 234566667776653 7778888776655432222
Q ss_pred CCCCCceEEEecCCCEEEEEeCCC-----cEEEEeCCCCC
Q 001386 621 GLPENPRICFNKNGTLLAVIANEN-----RIKILETPESN 655 (1088)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iwd~~~~~ 655 (1088)
... ..-...-+++..++|+.|| +|..||..+++
T Consensus 512 ~rs--~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 512 PRS--AVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred ccc--cccEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 211 1111223577778888775 46666665553
No 403
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.27 E-value=0.13 Score=44.07 Aligned_cols=102 Identities=13% Similarity=0.107 Sum_probs=64.8
Q ss_pred ceeeee---cCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEE
Q 001386 337 PMSMDF---HPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1088)
Q Consensus 337 V~~v~~---spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las 413 (1088)
|+++++ ..||+.-|++|+.|..|+||+=. +.+... . -.+.|++++-... .+++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei-------------------~-e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEI-------------------T-ETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEE-------------------e-cccceEEEEEcCC-CEEEE
Confidence 555555 45666779999999999999854 333321 1 3467888777765 67899
Q ss_pred EeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEe---cCCCCcEEEEEEeCCCcEE
Q 001386 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF---SAPCKQISVITCGDDKTIK 468 (1088)
Q Consensus 414 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~---s~d~~~l~l~s~s~d~~i~ 468 (1088)
+..+|+|-+|+-... +- ..+... .++++++ ..||.. -|++|-.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~R--lW---RiKSK~-~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQR--LW---RIKSKN-QVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcce--ee---eeccCC-CeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 999999998876331 11 222222 3555544 334443 577887787764
No 404
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=0.073 Score=62.82 Aligned_cols=104 Identities=18% Similarity=0.210 Sum_probs=78.7
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCc
Q 001386 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1088)
Q Consensus 407 dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1088)
-+..+|.|++.|.+-..|+.+. +++...-..-.++|++++|+.||+ .++.|-.+|.|.+||..+++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4667899999999988888764 222212223457999999999999 788899999999999999999999988888
Q ss_pred cEEEEeeee-eCCceEEEEEecCCeEEEEEC
Q 001386 487 PVYSLCPHA-KENIHFIFSISVDGKIKAWLY 516 (1088)
Q Consensus 487 ~v~~~~~~~-~~~~~~l~s~~~dg~i~iwd~ 516 (1088)
+.+.+-+.. ..++..++++...|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 877765543 334456788777776 4543
No 405
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.21 E-value=2.7 Score=46.60 Aligned_cols=277 Identities=13% Similarity=0.106 Sum_probs=153.5
Q ss_pred CCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEec-----CCCEEEEEeCC
Q 001386 745 GGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-----NDAYLFSASGG 819 (1088)
Q Consensus 745 ~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----dg~~l~~~~dg 819 (1088)
+...+++|+..|.++||+-..+... ....+.+.. -..+|..++.-+ +...||+-.-.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~-------------~~~lllE~~-----l~~PILqv~~G~F~s~~~~~~LaVLhP~ 97 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQ-------------PEDLLLETQ-----LKDPILQVECGKFVSGSEDLQLAVLHPR 97 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCC-------------CccEEEEEe-----cCCcEEEEEeccccCCCCcceEEEecCC
Confidence 3457889999999999986433221 001122222 345666665432 44577777788
Q ss_pred cEEEEEcCC--ce-------eEEEecCCC--CCeEEEEEcCC----CCcEEEEEeCCCeEEEEEcCCceeeeeeccccCC
Q 001386 820 VISLYIVMT--FK-------TILTIMPPS--PTATSLAFNPH----DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR 884 (1088)
Q Consensus 820 ~i~iwd~~~--~~-------~~~~~~~~~--~~i~~l~~sp~----d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~ 884 (1088)
++.+|.+.. |. .+..+..|. .....++.-|. +..++.+=+.||.+.+|+-+.-.....+.+ .--
T Consensus 98 kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~ll 176 (418)
T PF14727_consen 98 KLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLL 176 (418)
T ss_pred EEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCC
Confidence 888888731 11 122222232 22333443332 246899999999999999776555555554 222
Q ss_pred eeEEEECCCCCEEEEEeCCCcEEEEEcCC---C-c-----------------eeeeeeeecCCCCccCCCCeEEEEEcCC
Q 001386 885 VTGLVFSDALNILVSSGGDAQIFVWDVDG---W-G-----------------IQTCRSLQTPDGVMTLAPSETHIQFHKD 943 (1088)
Q Consensus 885 V~~l~~s~dg~~las~s~Dg~i~iwd~~~---~-~-----------------~~~~~~~~~~~~~~~~~~~v~~~~fs~d 943 (1088)
...+++.+.-..+++++.+..+.-|.... . + ......+..-+.. -.|..+.++..
T Consensus 177 PgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~----l~i~v~~~~~~ 252 (418)
T PF14727_consen 177 PGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQA----LDIQVVRFSSS 252 (418)
T ss_pred CcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCcee----EEEEEEEcCCC
Confidence 34477888888899999888888887532 0 0 0000111111111 12344445555
Q ss_pred CCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEE-EEEee----CCC---EEEEEeCCCcEEEEEcCCCceEEEeccc
Q 001386 944 QTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQ-ATFSC----DCR---MVFTSFVDGTLSIHEASNLEVQCRILST 1015 (1088)
Q Consensus 944 g~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~-l~fs~----dg~---~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 1015 (1088)
...+++-.+.++.+.+.. |.......- .....+ ..|.. ++. .+++++.++++.||.=.+....+...
T Consensus 253 ~~~IvvLger~Lf~l~~~-G~l~~~krL--d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~-- 327 (418)
T PF14727_consen 253 ESDIVVLGERSLFCLKDN-GSLRFQKRL--DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLP-- 327 (418)
T ss_pred CceEEEEecceEEEEcCC-CeEEEEEec--CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCC--
Confidence 556666666777777764 544333221 122222 22222 222 48889999999999755554443332
Q ss_pred cccCCCCccccccceE--EEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 1016 AYLRPTTSCLHVYPHA--IAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 1016 ~~~~~~~~~~~~~~~~--~~~~p~d~~~l~~~~~dg~v~~w~l~~~~ 1060 (1088)
..|++ ++.-++-..++++-+.+|.+.+-=|-...
T Consensus 328 -----------~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 328 -----------HVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred -----------CCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence 11222 33222235788889999999887664433
No 406
>PRK13684 Ycf48-like protein; Provisional
Probab=96.20 E-value=2.5 Score=46.11 Aligned_cols=158 Identities=10% Similarity=-0.004 Sum_probs=87.8
Q ss_pred cCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcC
Q 001386 882 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 961 (1088)
Q Consensus 882 ~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~ 961 (1088)
.+.+.++.+.|++.+++++ ..|.+.. ..+.+. .....+..... ..+..+.+.++++.++++..|.+++=...
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~-s~~~gg-~tW~~~~~~~~-----~~l~~i~~~~~g~~~~vg~~G~~~~~s~d 243 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYS-TWEPGQ-TAWTPHQRNSS-----RRLQSMGFQPDGNLWMLARGGQIRFNDPD 243 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEE-EcCCCC-CeEEEeeCCCc-----ccceeeeEcCCCCEEEEecCCEEEEccCC
Confidence 4568899999998776654 4564432 212211 11222222111 25889999999999888877766533344
Q ss_pred cceeeeeeecC---CCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCC
Q 001386 962 ELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1038 (1088)
Q Consensus 962 ~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d 1038 (1088)
.|+.-.....+ ....+..+.+.+++..++ ++.+|.|. ...+.|+.-.........+. ....+.|..
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~-------~~~~~~~~~-- 312 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPS-------NFYKIVFLD-- 312 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCc-------ceEEEEEeC--
Confidence 44433221111 134578899999887665 44677554 45555553322221111111 123344553
Q ss_pred CCEEEEEeCCCcEEEEeCCC
Q 001386 1039 PTQFAVGLTNGEVYVIEPNE 1058 (1088)
Q Consensus 1039 ~~~l~~~~~dg~v~~w~l~~ 1058 (1088)
++..+.++..|.|..|+-..
T Consensus 313 ~~~~~~~G~~G~il~~~~~~ 332 (334)
T PRK13684 313 PEKGFVLGQRGVLLRYVGSA 332 (334)
T ss_pred CCceEEECCCceEEEecCCC
Confidence 34556678899998887543
No 407
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=96.17 E-value=4.4 Score=48.59 Aligned_cols=104 Identities=13% Similarity=0.144 Sum_probs=64.1
Q ss_pred EEEecCCCEEEEEeCCcEEEEEcCCceeEEEe--cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEE--EEcCCceeeeeec
Q 001386 804 FALSKNDAYLFSASGGVISLYIVMTFKTILTI--MPPSPTATSLAFNPHDNNVIAIGMDDSTILI--YNARSSEVISKLE 879 (1088)
Q Consensus 804 ~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~l~~sp~d~~~lasg~~dg~i~l--wd~~~~~~~~~l~ 879 (1088)
.++.|-..++.+|-+..+++||+...+..+.. +.....|+.+.+ .+..+++|...-.|.. |+-...++ ..+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~~~n~l-~~fa 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVHFVRYRREDNQL-IVFA 1014 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee---cceEEEEeeccceEEEEEEecCCCeE-EEEe
Confidence 46677777888888999999999877665543 323456777777 4567777776665655 44443443 3343
Q ss_pred cc--cCCeeEEEECCCCCEEEEEeCCCcEEEEEcC
Q 001386 880 GH--SKRVTGLVFSDALNILVSSGGDAQIFVWDVD 912 (1088)
Q Consensus 880 ~h--~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~ 912 (1088)
.. ...|+++.+- |...+|.+..=|.+.+-.+.
T Consensus 1015 dD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 21 2235555554 44566766666666555554
No 408
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.06 E-value=2.5 Score=44.75 Aligned_cols=231 Identities=11% Similarity=0.042 Sum_probs=110.8
Q ss_pred CeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEec---CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee-e
Q 001386 800 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-I 875 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~-~ 875 (1088)
...++.|..+ ..++++..+ +.+...+.|+.-..+. .-......+.... ++..++ ++..|.|+.= ...|+. .
T Consensus 63 ~l~~I~f~~~-~g~ivG~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l-~~~~G~iy~T-~DgG~tW~ 137 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVGEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAEL-AGDRGAIYRT-TDGGKTWQ 137 (302)
T ss_dssp EEEEEEEETT-EEEEEEETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEE-EETT--EEEE-SSTTSSEE
T ss_pred eEEEEEecCC-ceEEEcCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEE-EcCCCcEEEe-CCCCCCee
Confidence 3566777543 445555444 4444444444433332 1122333344333 333333 3455654432 222322 1
Q ss_pred eeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeE
Q 001386 876 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHL 955 (1088)
Q Consensus 876 ~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i 955 (1088)
.....-.+.+..+.-++||+++++++.-....-||-.... ......... ..|..+.|+||+.+.+++..+.|
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~---w~~~~r~~~-----~riq~~gf~~~~~lw~~~~Gg~~ 209 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT---WQPHNRNSS-----RRIQSMGFSPDGNLWMLARGGQI 209 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----EEEE--SS-----S-EEEEEE-TTS-EEEEETTTEE
T ss_pred EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc---ceEEccCcc-----ceehhceecCCCCEEEEeCCcEE
Confidence 2233445778999999999999987666656677755321 222222211 36999999999999888888888
Q ss_pred EEEE-cCcceeeeee-ec--CCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceE
Q 001386 956 AIYE-AEELTCLKQW-FP--ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1031 (1088)
Q Consensus 956 ~vwd-~~~~~~~~~~-~~--~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1088)
+.=+ ....+..... .+ .....+..++|.+++...++| ..|++ +...+.|+--.+-......+.. ...
T Consensus 210 ~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~g-g~G~l-~~S~DgGktW~~~~~~~~~~~n-------~~~ 280 (302)
T PF14870_consen 210 QFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVG-GSGTL-LVSTDGGKTWQKDRVGENVPSN-------LYR 280 (302)
T ss_dssp EEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEE-STT-E-EEESSTTSS-EE-GGGTTSSS----------E
T ss_pred EEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEe-CCccE-EEeCCCCccceECccccCCCCc-------eEE
Confidence 8877 3333332221 11 124458999999988777755 45544 4566777655444433333322 244
Q ss_pred EEECCCCCCEEEEEeCCCcEEEE
Q 001386 1032 IAAHPLKPTQFAVGLTNGEVYVI 1054 (1088)
Q Consensus 1032 ~~~~p~d~~~l~~~~~dg~v~~w 1054 (1088)
+.|.+ ++.-++-+.+|.|.-|
T Consensus 281 i~f~~--~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 281 IVFVN--PDKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEEE--TTEEEEE-STTEEEEE
T ss_pred EEEcC--CCceEEECCCcEEEEe
Confidence 66654 2455556688887665
No 409
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.94 E-value=2.3 Score=43.39 Aligned_cols=193 Identities=13% Similarity=0.165 Sum_probs=112.8
Q ss_pred eccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccC-CccEEEEeeeeeCCceEEEEEecCCeEEEEE
Q 001386 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH-GAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515 (1088)
Q Consensus 437 ~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 515 (1088)
+.+-...+.++.|+|+.+ .|++......-.||=..+|+.+.++.-. -.....+.+ -.++.++++--.++.+.++.
T Consensus 81 i~g~~~nvS~LTynp~~r--tLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Iey--ig~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 81 ILGETANVSSLTYNPDTR--TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEY--IGGNQFVIVDERDRALYLFT 156 (316)
T ss_pred cccccccccceeeCCCcc--eEEEecCCCceEEEEecCCceEEEecccccCChhHeEE--ecCCEEEEEehhcceEEEEE
Confidence 345556699999999999 5666666666667766789988877421 112223333 34667888888888888887
Q ss_pred CCCCCceEE-------ec---CCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCc-eeEEEeccccc----ccc
Q 001386 516 YDSLGARVD-------YD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQ----HNS 580 (1088)
Q Consensus 516 ~~~~~~~~~-------~~---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~----~~~ 580 (1088)
++....... +. ..+.....++|+|....|..+-.-. -..|+.|+..... .......+... -..
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~--P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~D 234 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN--PIGIFEVTQSPSSLSVHASLDPTADRDLFVLD 234 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccC--CcEEEEEecCCcccccccccCcccccceEeec
Confidence 766543221 11 1244678899999999988875422 3334455422211 11111111100 145
Q ss_pred EEEEEEeCCCCEEEE-EeCCCcEEEEEcCCCeeeEEEeCCCCC-------CCCceEEEecCCCE
Q 001386 581 VSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTIDAGGGL-------PENPRICFNKNGTL 636 (1088)
Q Consensus 581 v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~~~~~~~~~~-------~~v~~v~~s~~~~~ 636 (1088)
+.++.|++..+.+++ +.+++.+.-.|.. |..+..+....+. +..-.++..++|.+
T Consensus 235 vSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~l 297 (316)
T COG3204 235 VSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNL 297 (316)
T ss_pred cccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCE
Confidence 778888876555555 5566777777764 4445555443321 22334555555543
No 410
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.85 E-value=0.62 Score=55.49 Aligned_cols=98 Identities=20% Similarity=0.286 Sum_probs=70.0
Q ss_pred EEEEEcccCcEEEEecCCCcc-eeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccC
Q 001386 349 LLLVGTNVGDTGLWDVNSGQK-LFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG 427 (1088)
Q Consensus 349 lla~g~~dg~i~iwd~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~ 427 (1088)
+++.|++.|.+-..|+.+.-. .. | -..-.++|++++|+.||+.++.|-.+|.|.+||+..
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~------~-------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~ 161 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLH------Q-------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR 161 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhh------c-------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccC
Confidence 578888888888888765311 10 0 122468999999999999999999999999999999
Q ss_pred CCcccceeEeccCCCCEEE---EEecCCCCcEEEEEEeCCCcEEEEeC
Q 001386 428 GSDARQQLEIDAHVGNVND---LAFSAPCKQISVITCGDDKTIKVWDA 472 (1088)
Q Consensus 428 ~~~~~~~~~~~~h~~~v~~---~~~s~d~~~l~l~s~s~d~~i~vwd~ 472 (1088)
++.++. +..|..+.+. +.+..++. .++++..-|. +|.+
T Consensus 162 ~k~l~~---i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 162 AKILKV---ITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWKL 202 (1206)
T ss_pred Ccceee---eeecCCccceEEEEEEeCCCc--EEEEccCCCc--eEEE
Confidence 887774 4445444443 44455555 6778777775 5653
No 411
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.84 E-value=1.2 Score=48.37 Aligned_cols=234 Identities=12% Similarity=0.060 Sum_probs=103.7
Q ss_pred ceEEEEEe-cCCeEEEEECCCCC----ceEEecC---CC----CceEEEEEccCCCEEEEEeeC--CCCceeEEEEeCCC
Q 001386 499 IHFIFSIS-VDGKIKAWLYDSLG----ARVDYDA---PG----LGCTRMAYSANGRRLFSCGTS--KEGESFLVEWNESE 564 (1088)
Q Consensus 499 ~~~l~s~~-~dg~i~iwd~~~~~----~~~~~~~---~~----~~v~~~~~s~~g~~l~~~~~~--~~~~~~i~iwd~~~ 564 (1088)
.++|+..+ ..++|.+.|+.+.. ....+.. .. ..-..+-.-|+|+.++++-.+ +++.+-+.+.|-.+
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 35666665 67889999987432 1222221 00 112234455899998876554 34556788999988
Q ss_pred CceeEEEeccccccccEEEEEEeCCCCEEEEEe--------------------CCCcEEEEEcCCCeeeEEEeCCCCCCC
Q 001386 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--------------------DDHVIKIWDMNKVQLLTTIDAGGGLPE 624 (1088)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~ 624 (1088)
.+..............-..+.+.|..+.+++.. ...++.+||+.+.+.++++........
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~ 246 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM 246 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence 888877765442223445677888888888754 235799999999999999987643222
Q ss_pred CceEEEecC--CCEEEEE-eCCCcEEEE-eCCCCCc----cccccc-----------------ccCcceeeeecCCCcce
Q 001386 625 NPRICFNKN--GTLLAVI-ANENRIKIL-ETPESNS----VDAAGV-----------------LSDNLRKLSVNPISTVT 679 (1088)
Q Consensus 625 v~~v~~s~~--~~~l~~~-~~dg~i~iw-d~~~~~~----~~~~~~-----------------~~~~v~~~~~~p~~~~~ 679 (1088)
...+.|..+ ..+-.++ ....+|..| ....+.- +..+.. ...-++.+.+
T Consensus 247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i------- 319 (461)
T PF05694_consen 247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI------- 319 (461)
T ss_dssp EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-------
T ss_pred eEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE-------
Confidence 345666543 3332222 233344443 3333311 000000 0111233333
Q ss_pred eccccCCceeecCCCCCCCCcc-cccccCccceecccccc-CCCcceeeecCCc------------cccccEEEEEEecC
Q 001386 680 GAGIANGSVSVNEDPKEDVKPE-ISVEAENKSEVEKPLFA-RPSECQSLLLPSK------------VKANKISRLTYNNG 745 (1088)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~~------------~~~~~i~~~~~s~~ 745 (1088)
+.|.++| ++.-.+|.++.||+.-. .+.....+.+... .-.+....+..|-|
T Consensus 320 ---------------SlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~D 384 (461)
T PF05694_consen 320 ---------------SLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLD 384 (461)
T ss_dssp ----------------TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TT
T ss_pred ---------------ccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccC
Confidence 3445554 56777899999996543 2222222222211 12234567888999
Q ss_pred CceEEEecc
Q 001386 746 GQAIFALAS 754 (1088)
Q Consensus 746 g~~l~~~~~ 754 (1088)
|++|....+
T Consensus 385 GkRlYvTnS 393 (461)
T PF05694_consen 385 GKRLYVTNS 393 (461)
T ss_dssp SSEEEEE--
T ss_pred CeEEEEEee
Confidence 998877654
No 412
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.78 E-value=0.27 Score=54.55 Aligned_cols=159 Identities=13% Similarity=0.083 Sum_probs=91.5
Q ss_pred CCeEEEEEcCCCCcEEEEEe--CCCeEEEEEcCCceeeeeeccccCCeeEEEECCC----CCEEEEEeCCCcEEEEEcCC
Q 001386 840 PTATSLAFNPHDNNVIAIGM--DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA----LNILVSSGGDAQIFVWDVDG 913 (1088)
Q Consensus 840 ~~i~~l~~sp~d~~~lasg~--~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~d----g~~las~s~Dg~i~iwd~~~ 913 (1088)
.++..++|.. +.+.+.+.- .+|.+++=| .+.+..|+ .|..+.|+|- -..|...-....|.||.+..
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 5678899984 444444432 333333222 23444443 4899999984 33444456778899999873
Q ss_pred Cc--eeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEE
Q 001386 914 WG--IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF 990 (1088)
Q Consensus 914 ~~--~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~ 990 (1088)
.. ..+...-+..+-......--..+.|+|....|++ ...+.-.++++......-..-....+.|.|.+|..||..|+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 22 2222222222111111112357889999999988 44444345565533322222223478899999999999887
Q ss_pred EEeCC-CcEEEEEcCCC
Q 001386 991 TSFVD-GTLSIHEASNL 1006 (1088)
Q Consensus 991 s~s~d-g~v~vwd~~~~ 1006 (1088)
++-.. =.-++||-...
T Consensus 172 VAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EEeCCeEEEEEecCchh
Confidence 66443 24578985544
No 413
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.68 E-value=2.9 Score=50.58 Aligned_cols=204 Identities=13% Similarity=0.105 Sum_probs=119.0
Q ss_pred CCCEEEEEeCCcEEEEEcCCceeEEEecCCCCC--------eEEEEEcC---------------CCCcEEEEEeCCCeEE
Q 001386 809 NDAYLFSASGGVISLYIVMTFKTILTIMPPSPT--------ATSLAFNP---------------HDNNVIAIGMDDSTIL 865 (1088)
Q Consensus 809 dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~--------i~~l~~sp---------------~d~~~lasg~~dg~i~ 865 (1088)
++.++++..++.|.-.|..+|+.+.++...... .+.+++-. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 444444444788888899999888776533211 12233321 0234788899999999
Q ss_pred EEEcCCceeeeeeccccCCee-------------EEEECC--CCCEEEEEeC----------CCcEEEEEcCCCceeeee
Q 001386 866 IYNARSSEVISKLEGHSKRVT-------------GLVFSD--ALNILVSSGG----------DAQIFVWDVDGWGIQTCR 920 (1088)
Q Consensus 866 lwd~~~~~~~~~l~~h~~~V~-------------~l~~s~--dg~~las~s~----------Dg~i~iwd~~~~~~~~~~ 920 (1088)
-.|.++|+.+..+.. .+.|. .+.-+| .+..++.++. +|.|+-+|..+|+..=..
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998876642 22221 111122 1335555542 688999999998754322
Q ss_pred eeecCC-------CCcc--CCCCe-EEEEEcCCCCEEEEE-------------------eCCeEEEEEcCcceeeeeeec
Q 001386 921 SLQTPD-------GVMT--LAPSE-THIQFHKDQTRFLLV-------------------HETHLAIYEAEELTCLKQWFP 971 (1088)
Q Consensus 921 ~~~~~~-------~~~~--~~~~v-~~~~fs~dg~~l~~~-------------------~d~~i~vwd~~~~~~~~~~~~ 971 (1088)
...... +..- ....+ ..+++.++...+... ..+.|.-.|.+||+..-.+..
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 111000 0000 00011 234555555544431 124577889999998877654
Q ss_pred CC--------CcCEEEEEEee-CCC---EEEEEeCCCcEEEEEcCCCceEEEec
Q 001386 972 IS--------SVPISQATFSC-DCR---MVFTSFVDGTLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 972 ~h--------~~~v~~l~fs~-dg~---~l~s~s~dg~v~vwd~~~~~~~~~~~ 1013 (1088)
-| .....-+.+.. ||+ .|+.++.+|.+.+.|-.+|+.+....
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 33 11122223333 664 78899999999999999999987643
No 414
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.67 E-value=2.4 Score=41.48 Aligned_cols=100 Identities=17% Similarity=0.225 Sum_probs=62.4
Q ss_pred EEEEecCCceEEEecc-ccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe
Q 001386 739 RLTYNNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS 817 (1088)
Q Consensus 739 ~~~~s~~g~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 817 (1088)
.++|+.+.+.+....+ +-.|.-||++...-.. ...-.+++++..+.. ..-..-.+++..+|.+.++.-
T Consensus 162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~--snr~~i~dlrk~~~~---------e~~~PDGm~ID~eG~L~Va~~ 230 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDL--SNRKVIFDLRKSQPF---------ESLEPDGMTIDTEGNLYVATF 230 (310)
T ss_pred cccccccCcEEEEEccCceEEeeeecCCCcccc--cCcceeEEeccCCCc---------CCCCCCcceEccCCcEEEEEe
Confidence 5667766665554443 5667667743322111 112223444433211 112223456666787766664
Q ss_pred -CCcEEEEEcCCceeEEEecCCCCCeEEEEEcC
Q 001386 818 -GGVISLYIVMTFKTILTIMPPSPTATSLAFNP 849 (1088)
Q Consensus 818 -dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp 849 (1088)
.++|.-.|..+|+.+.++.-+...|++++|--
T Consensus 231 ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 231 NGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred cCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 78999999999999999999999999999964
No 415
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.63 E-value=3.1 Score=42.50 Aligned_cols=192 Identities=11% Similarity=0.051 Sum_probs=110.0
Q ss_pred ccEEEEEEecCCceEEEecccc--ceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCE
Q 001386 735 NKISRLTYNNGGQAIFALASNG--VHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 812 (1088)
Q Consensus 735 ~~i~~~~~s~~g~~l~~~~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 812 (1088)
.-...+.|..+|..+-+.+..| .++.++ ..+|+......++ ...--..+++..|.-+
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d------------------~~tg~~~~~~~l~---~~~FgEGit~~~d~l~ 103 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVD------------------LETGKVLQSVPLP---PRYFGEGITILGDKLY 103 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEE------------------TTTSSEEEEEE-T---TT--EEEEEEETTEEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEE------------------CCCCcEEEEEECC---ccccceeEEEECCEEE
Confidence 3456788888888888887766 444444 4455544444443 2334456666666555
Q ss_pred EEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccc-----CCeeE
Q 001386 813 LFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-----KRVTG 887 (1088)
Q Consensus 813 l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~-----~~V~~ 887 (1088)
..+..++...+||.++.+.+.++.- .+.-..++. |++.|+.......++++|..+.+....+.-.. ..++-
T Consensus 104 qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNE 179 (264)
T PF05096_consen 104 QLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNE 179 (264)
T ss_dssp EEESSSSEEEEEETTTTEEEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEE
T ss_pred EEEecCCeEEEEccccceEEEEEec-CCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEe
Confidence 5566689999999999999988863 345566663 56677777667789999998876665554321 23444
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC-------CCccCCCCeEEEEEcCCCCEEEEEeC
Q 001386 888 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD-------GVMTLAPSETHIQFHKDQTRFLLVHE 952 (1088)
Q Consensus 888 l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~fs~dg~~l~~~~d 952 (1088)
+.|- +|...|=.=....|..-|..+|+.....-+..+. .......-...+|+.|+...+.+...
T Consensus 180 LE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 180 LEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 5554 5555554444445666677776644432222111 11111235789999988777766443
No 416
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.63 E-value=2.9 Score=46.49 Aligned_cols=139 Identities=13% Similarity=0.153 Sum_probs=79.3
Q ss_pred CCeeEEEEecCCCEEEEEe------------C-CcEEEEEcCC--ce--eEEEecCCCCCeEEEEEcCCCCcEEEEEeCC
Q 001386 799 EAVPCFALSKNDAYLFSAS------------G-GVISLYIVMT--FK--TILTIMPPSPTATSLAFNPHDNNVIAIGMDD 861 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~------------d-g~i~iwd~~~--~~--~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d 861 (1088)
.....|+|.++|+++++.. . +.|.+++-.+ |+ ....+.........+++.+ ++ +++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence 4566899999999887752 1 2677776432 32 2234443445568899998 67 444 4444
Q ss_pred CeEEEEEcCC-------ce-eeeeecc----ccCCeeEEEECCCCCEEEEEeCC-------------------CcEEEEE
Q 001386 862 STILIYNARS-------SE-VISKLEG----HSKRVTGLVFSDALNILVSSGGD-------------------AQIFVWD 910 (1088)
Q Consensus 862 g~i~lwd~~~-------~~-~~~~l~~----h~~~V~~l~~s~dg~~las~s~D-------------------g~i~iwd 910 (1088)
...++.|... .+ ++..+.. +......++|.|||.+.++.+.. |.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 3333435432 11 2222322 23447789999999887766521 3344444
Q ss_pred cCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE
Q 001386 911 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 949 (1088)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~ 949 (1088)
.++++. +.+. .+.. ....++|+++|+++++
T Consensus 171 pdg~~~---e~~a--~G~r----np~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 171 PDGGKL---RVVA--HGFQ----NPYGHSVDSWGDVFFC 200 (367)
T ss_pred cCCCeE---EEEe--cCcC----CCccceECCCCCEEEE
Confidence 444331 1121 2222 2568999999999887
No 417
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.57 E-value=0.93 Score=53.22 Aligned_cols=236 Identities=11% Similarity=0.071 Sum_probs=130.9
Q ss_pred ecCCCEEEEEe-C------CcEEEEEcCCceeEEEecC-CCCCeEEEEEcCCCCcEEEEEeCC-C-----eEEEEEcCCc
Q 001386 807 SKNDAYLFSAS-G------GVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDD-S-----TILIYNARSS 872 (1088)
Q Consensus 807 s~dg~~l~~~~-d------g~i~iwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~lasg~~d-g-----~i~lwd~~~~ 872 (1088)
+..+.++++|+ . ..+..||..+++-.....- ....-.++++. ++.+.++|+.| | ++..||..+.
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence 33455566665 3 3488899887643322221 22234455555 56899999999 3 7788888775
Q ss_pred e--eeeeeccccCCeeEEEECCCCCEEEEEeCCCc-----EEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCC
Q 001386 873 E--VISKLEGHSKRVTGLVFSDALNILVSSGGDAQ-----IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 945 (1088)
Q Consensus 873 ~--~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~ 945 (1088)
+ .+..+...........+ +|.+.|+||.||. +..||..+.+... ....... .-...+..-+|+
T Consensus 360 ~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~---va~m~~~-----r~~~gv~~~~g~ 429 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTP---VAPMLTR-----RSGHGVAVLGGK 429 (571)
T ss_pred ceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccc---cCCCCcc-----eeeeEEEEECCE
Confidence 4 22333322222222222 6888899999864 7777777654222 2211110 122334445677
Q ss_pred EEEEE-eC------CeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCC-----cEEEEEcCCCceEEEec
Q 001386 946 RFLLV-HE------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG-----TLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 946 ~l~~~-~d------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg-----~v~vwd~~~~~~~~~~~ 1013 (1088)
..++| .+ ..+..||..++.-.......-...-.. .-+-++...+.|+.|+ +|..||..+.+....-.
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~ 508 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP 508 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEECCEEEEECCccCCCccceEEEEcCCCCceeEccc
Confidence 77773 23 358889988776433211111111112 3344777888888776 37778888877653311
Q ss_pred cccccCCCCccccccceEEEECCCCCCEEEEEeCCC-----cEEEEeCCCCCCCccccCC
Q 001386 1014 STAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPP 1068 (1088)
Q Consensus 1014 ~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg-----~v~~w~l~~~~~~~~~~~~ 1068 (1088)
.... .....++-. ++.+.++|+.|| +|..||. ...+|...++
T Consensus 509 ----m~~~-----rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp--~~d~W~~~~~ 555 (571)
T KOG4441|consen 509 ----MTSP-----RSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDP--ETDTWTEVTE 555 (571)
T ss_pred ----Cccc-----cccccEEEE--CCEEEEEecccCccccceeEEcCC--CCCceeeCCC
Confidence 1111 011112222 568899999998 6777866 4456876655
No 418
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.52 E-value=0.06 Score=38.30 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=29.1
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEEcc
Q 001386 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH 426 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~ 426 (1088)
-...|.+++|+|...+||.++.+|.|.++.++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 34679999999999999999999999999993
No 419
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.47 E-value=0.035 Score=39.49 Aligned_cols=33 Identities=24% Similarity=0.426 Sum_probs=29.5
Q ss_pred CCceeeeecCCCCeEEEEEcccCcEEEEecCCCcc
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQK 369 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~ 369 (1088)
..|.+++|+|... ++|.|+.+|.|.|+.+ +++.
T Consensus 12 ~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence 4799999999999 8999999999999998 6554
No 420
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.46 E-value=3.6 Score=49.40 Aligned_cols=94 Identities=10% Similarity=0.034 Sum_probs=56.7
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCcEEEEEcCC-ceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceee
Q 001386 797 SQEAVPCFALSKNDAYLFSASGGVISLYIVMT-FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 875 (1088)
Q Consensus 797 ~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~ 875 (1088)
..-.|..+.++|+|+++|..+...|.|..+.. +.....+.+....|.|=.+.= +..++
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~-------------------- 141 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFF-------------------- 141 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhc--------------------
Confidence 44578999999999999998877777766642 111111221112222222111 11111
Q ss_pred eeeccccCCeeEEEECCC---CCEEEEEeCCCcEEEEEcCC
Q 001386 876 SKLEGHSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDG 913 (1088)
Q Consensus 876 ~~l~~h~~~V~~l~~s~d---g~~las~s~Dg~i~iwd~~~ 913 (1088)
...+...|..+.|+|. +..|+.-..|+++|+||+..
T Consensus 142 --~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 142 --TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred --cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 1123456788888885 47888888899999999975
No 421
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.33 E-value=0.048 Score=52.81 Aligned_cols=102 Identities=16% Similarity=0.196 Sum_probs=68.6
Q ss_pred EEEEE-eCCcEEEEEcCCceeEEE-ecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccc-CCeeEE
Q 001386 812 YLFSA-SGGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRVTGL 888 (1088)
Q Consensus 812 ~l~~~-~dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~-~~V~~l 888 (1088)
-+++| ++|.|.+|...-...... +..-...|.++.-.-+++.+..++..||.|+.|++.-++.+.....|. .++..+
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ 151 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL 151 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence 34445 599999998873222111 111222333333222255689999999999999999999888888888 566666
Q ss_pred EECCCCCEEEEE--eCCCcEEEEEcCC
Q 001386 889 VFSDALNILVSS--GGDAQIFVWDVDG 913 (1088)
Q Consensus 889 ~~s~dg~~las~--s~Dg~i~iwd~~~ 913 (1088)
..+..+++++++ |.|..++.|++..
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchhh
Confidence 666667777777 7777788888765
No 422
>PRK13684 Ycf48-like protein; Provisional
Probab=95.27 E-value=5.2 Score=43.66 Aligned_cols=154 Identities=11% Similarity=0.031 Sum_probs=89.2
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCeEEE-EEcCCceeeee-eccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCce
Q 001386 839 SPTATSLAFNPHDNNVIAIGMDDSTILI-YNARSSEVISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI 916 (1088)
Q Consensus 839 ~~~i~~l~~sp~d~~~lasg~~dg~i~l-wd~~~~~~~~~-l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~ 916 (1088)
...+.++.+.| ++.++++| ..|.+.. ++ ..++.-.. -..-...++++.+.++++.++. +..|.+++=..+.+..
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCc
Confidence 45688999999 77776655 4565543 22 11221111 1223457899999999987765 4567654323343321
Q ss_pred eeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeee--cCCCcCEEEEEEeeCCCEEEEEeC
Q 001386 917 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF--PISSVPISQATFSCDCRMVFTSFV 994 (1088)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~--~~h~~~v~~l~fs~dg~~l~s~s~ 994 (1088)
...+..+... ....+..++|.+++..++++.+|.+. .....|+.-.... ..-......+.|..+++.++ .+.
T Consensus 248 --W~~~~~~~~~--~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~ 321 (334)
T PRK13684 248 --WSKPIIPEIT--NGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQ 321 (334)
T ss_pred --cccccCCccc--cccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECC
Confidence 1111111110 11247889999999988888888665 3445454433321 11134577888887777666 457
Q ss_pred CCcEEEEE
Q 001386 995 DGTLSIHE 1002 (1088)
Q Consensus 995 dg~v~vwd 1002 (1088)
.|.|..|+
T Consensus 322 ~G~il~~~ 329 (334)
T PRK13684 322 RGVLLRYV 329 (334)
T ss_pred CceEEEec
Confidence 88888776
No 423
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.20 E-value=0.3 Score=47.38 Aligned_cols=113 Identities=12% Similarity=0.184 Sum_probs=78.4
Q ss_pred eeeeecCCCCeEEEEEcccCcEEEEe--cCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 001386 338 MSMDFHPVQHTLLLVGTNVGDTGLWD--VNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1088)
Q Consensus 338 ~~v~~spdg~~lla~g~~dg~i~iwd--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~ 415 (1088)
+.++|+.|.+.+..+-+.+-+|.-|| ..+|...... .++|+.+. +++.. +. ...++..-+|.+.+++.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~--~i~dlrk~-~~~e~--~~-----PDGm~ID~eG~L~Va~~ 230 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRK--VIFDLRKS-QPFES--LE-----PDGMTIDTEGNLYVATF 230 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcc--eeEEeccC-CCcCC--CC-----CCcceEccCCcEEEEEe
Confidence 57889988888888888888998888 7788766432 24555433 22222 11 12244466889999998
Q ss_pred CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeC
Q 001386 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 463 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~ 463 (1088)
..++|...|..+|+.+. ++.-....|++++|-..+-.++.+++..
T Consensus 231 ng~~V~~~dp~tGK~L~---eiklPt~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 231 NGGTVQKVDPTTGKILL---EIKLPTPQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred cCcEEEEECCCCCcEEE---EEEcCCCceEEEEecCCCccEEEEEehh
Confidence 99999999999998776 4555578999999976543435555554
No 424
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.76 E-value=8.6 Score=42.78 Aligned_cols=280 Identities=11% Similarity=0.127 Sum_probs=142.5
Q ss_pred cCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-----CCCEEEEEeCC
Q 001386 343 HPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-----DGSLLGVAYSK 417 (1088)
Q Consensus 343 spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~-----dg~~las~~~d 417 (1088)
+++++..+++||.+|.++||+...+..... ...+-..-+.+|-.++.-+ +...||+ -.-
T Consensus 33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~~~---------------~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP 96 (418)
T PF14727_consen 33 SPSGSDKIIVGSYSGILRIYDPSGNEFQPE---------------DLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHP 96 (418)
T ss_pred CCCCccEEEEeccccEEEEEccCCCCCCCc---------------cEEEEEecCCcEEEEEeccccCCCCcceEEE-ecC
Confidence 344555789999999999999955441110 0000122346777776542 2345555 466
Q ss_pred CEEEEEEccCCCcc------cceeEeccCCCC--EEEEEecC----CCCcEEEEEEeCCCcEEEEeCCCCceeEEecc--
Q 001386 418 HIVQLYAYHGGSDA------RQQLEIDAHVGN--VNDLAFSA----PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-- 483 (1088)
Q Consensus 418 g~i~vwd~~~~~~~------~~~~~~~~h~~~--v~~~~~s~----d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~-- 483 (1088)
..+.||.+...... ..+..+..|.-. ...++.-| .++. .+..=+.||.+.+++-+.-...+.+.+
T Consensus 97 ~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~~l 175 (418)
T PF14727_consen 97 RKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPDFL 175 (418)
T ss_pred CEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCCCC
Confidence 67888888422111 111122333322 22222212 2233 778889999999998554333333333
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc-----------------------eEEecCCCC--ceEEEEEc
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-----------------------RVDYDAPGL--GCTRMAYS 538 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----------------------~~~~~~~~~--~v~~~~~s 538 (1088)
..+++ ++.+.. +.+++++.+..+..|....... ...+..... .+..+.++
T Consensus 176 lPgPl---~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~ 250 (418)
T PF14727_consen 176 LPGPL---CYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFS 250 (418)
T ss_pred CCcCe---EEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcC
Confidence 23444 443333 4788888888888886531110 001111111 23333344
Q ss_pred cCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeC----CC---CEEEEEeCCCcEEEEEcCCCe
Q 001386 539 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT----AK---DQILAAGDDHVIKIWDMNKVQ 611 (1088)
Q Consensus 539 ~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~---~~l~~~s~dg~i~iwd~~~~~ 611 (1088)
.....+++-+ +..+.+.+. +|......+- . ..+...+.|.. ++ ..++.++.++++.||.- .+
T Consensus 251 ~~~~~IvvLg-----er~Lf~l~~-~G~l~~~krL-d--~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~ 319 (418)
T PF14727_consen 251 SSESDIVVLG-----ERSLFCLKD-NGSLRFQKRL-D--YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TT 319 (418)
T ss_pred CCCceEEEEe-----cceEEEEcC-CCeEEEEEec-C--CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--Ce
Confidence 3333444433 445777765 4544333222 2 02222222221 22 24888999999999874 34
Q ss_pred eeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1088)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 655 (1088)
++.........-.+.-..|..-...+++-+.+|.+.+-=+.+..
T Consensus 320 L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 320 LVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred EEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence 44443332111011112222335588888899999987666553
No 425
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.61 E-value=7.5 Score=46.77 Aligned_cols=31 Identities=13% Similarity=0.377 Sum_probs=24.1
Q ss_pred CCceEEEecC---CCEEEEEeCCCcEEEEeCCCC
Q 001386 624 ENPRICFNKN---GTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 624 ~v~~v~~s~~---~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
.|..+.|+|. +..|++-+.|+++|+||+...
T Consensus 148 ~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 148 EIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 3567788874 578888888999999998754
No 426
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.40 E-value=0.15 Score=49.54 Aligned_cols=106 Identities=12% Similarity=0.046 Sum_probs=66.1
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEE-ecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCC
Q 001386 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA-FSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1088)
Q Consensus 407 dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~-~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 485 (1088)
-+..+++|+.+|.|.+|+...-..... ....-...|.++. -..++. +..+++.|+.|+.|++.-++.+.....|.
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d--~~~s~~e~i~~~Ip~~~~~~--~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSD--RVCSGEESIDLGIPNGRDSS--LGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHH--hhhcccccceeccccccccc--eeEEeccCCceeeeccccCceeeeecccc
Confidence 357889999999999999873211111 0111222333332 233344 67888899999999999988887777776
Q ss_pred -ccEEEEeeeeeCCceEEEEE--ecCCeEEEEECCC
Q 001386 486 -APVYSLCPHAKENIHFIFSI--SVDGKIKAWLYDS 518 (1088)
Q Consensus 486 -~~v~~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~ 518 (1088)
.++...... ..+.++..+ |.|..++.|++..
T Consensus 145 ~~~~e~~ivv--~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 145 FESGEELIVV--GSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCCcceeEEe--cCCceEEeeccccchhhhhcchhh
Confidence 444444432 233456666 6677777776653
No 427
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.34 E-value=11 Score=42.42 Aligned_cols=58 Identities=12% Similarity=0.058 Sum_probs=42.2
Q ss_pred EEEEcCCCCEEEEEeC--CeEEEEEcCcc--eeeeeeecCCCcCEEEEEEeeCCCEEEEEeC
Q 001386 937 HIQFHKDQTRFLLVHE--THLAIYEAEEL--TCLKQWFPISSVPISQATFSCDCRMVFTSFV 994 (1088)
Q Consensus 937 ~~~fs~dg~~l~~~~d--~~i~vwd~~~~--~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~ 994 (1088)
-++|+|....+|++++ +.|.||.+... ..++++.-..+.+...++|-.|+-.|+..+.
T Consensus 343 liAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdklLLilVGk 404 (671)
T PF15390_consen 343 LIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDKLLLILVGK 404 (671)
T ss_pred eeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCCeEEEEecc
Confidence 5899999999999755 67999987643 2344444445777888999888877665543
No 428
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.22 E-value=3.4 Score=47.68 Aligned_cols=200 Identities=13% Similarity=0.124 Sum_probs=104.3
Q ss_pred EEEecCCCEEEEEeC-----------CcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc
Q 001386 804 FALSKNDAYLFSASG-----------GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 872 (1088)
Q Consensus 804 ~~~s~dg~~l~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~ 872 (1088)
++..|-|.-+|+..+ -.|+||++. |..+..+.-..+.+..+.|+. + .-|++-..+|+++||++..
T Consensus 38 fa~Ap~gGpIAV~r~p~~~~~~~~a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~-~-eeLI~v~k~g~v~Vy~~~g- 113 (829)
T KOG2280|consen 38 FACAPFGGPIAVTRSPSKLVPLYSARPYIRIFNIS-GQLLGRILWKHGELIGMGWSD-D-EELICVQKDGTVHVYGLLG- 113 (829)
T ss_pred EEecccCCceEEEecccccccccccceeEEEEecc-ccchHHHHhcCCCeeeecccC-C-ceEEEEeccceEEEeecch-
Confidence 444555555555532 237888875 555555443444888999996 4 4566678999999999863
Q ss_pred eeeee--e--ccccCCeeEEEECCCCCEEEEEeCCCcEE-EEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCC--
Q 001386 873 EVISK--L--EGHSKRVTGLVFSDALNILVSSGGDAQIF-VWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT-- 945 (1088)
Q Consensus 873 ~~~~~--l--~~h~~~V~~l~~s~dg~~las~s~Dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~-- 945 (1088)
+.+.. . +.....|..+.|..+|-.+.+ .+|.+. +-+.+... ...+....+... .-.+...-++++
T Consensus 114 e~ie~~svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~~---~~~~~diP~~~~---~~~~Wt~~~~~~~~ 185 (829)
T KOG2280|consen 114 EFIESNSVGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEPK---LRKMPDIPYNEL---PKSCWTVFQPHRQS 185 (829)
T ss_pred hhhcccccccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcch---hhhCCCCCCccC---CCcceeEecCCCcc
Confidence 32222 1 122334555555556644443 334333 33333211 111111111111 112222222221
Q ss_pred EEEEEeCC--eEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccc
Q 001386 946 RFLLVHET--HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1015 (1088)
Q Consensus 946 ~l~~~~d~--~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 1015 (1088)
.++..-+- ...++...++......+......+..+..||+.++|+--..+|.|.+-+.+..+..+.+...
T Consensus 186 ~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~ 257 (829)
T KOG2280|consen 186 TILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCT 257 (829)
T ss_pred eeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCC
Confidence 11111110 11222222221111111111367888999999999999999999999999998888887733
No 429
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.19 E-value=7.9 Score=39.99 Aligned_cols=207 Identities=13% Similarity=0.112 Sum_probs=117.5
Q ss_pred CeeEEEEecCCCEEEEEe-CCcEEEEEcC-------CceeEEEecC-----CCCCeEEEEEcCCCCcE------------
Q 001386 800 AVPCFALSKNDAYLFSAS-GGVISLYIVM-------TFKTILTIMP-----PSPTATSLAFNPHDNNV------------ 854 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~-dg~i~iwd~~-------~~~~~~~~~~-----~~~~i~~l~~sp~d~~~------------ 854 (1088)
....++++|.+.+-++.. .+...+||.. ....+.++.. .....+.+.|+. ...+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccccee
Confidence 346799999987777665 6789999986 1222333332 123567787775 2223
Q ss_pred EEEEeCCCeEEEEEcCCcee-----eeeecc-ccCCee-EEEECCC--CCEEEEE-eCCCcEEEEEcCCCceeeeeee--
Q 001386 855 IAIGMDDSTILIYNARSSEV-----ISKLEG-HSKRVT-GLVFSDA--LNILVSS-GGDAQIFVWDVDGWGIQTCRSL-- 922 (1088)
Q Consensus 855 lasg~~dg~i~lwd~~~~~~-----~~~l~~-h~~~V~-~l~~s~d--g~~las~-s~Dg~i~iwd~~~~~~~~~~~~-- 922 (1088)
++.+++||+|.=|...-+.. ...+.. ..+.|+ .+++... +.+|..+ -..++|.++|-.-......-..
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 45678999999998533221 122221 123343 4565533 4555444 4678899988654221100000
Q ss_pred -ecCCCCccCCCCeEEEEEcCCCCEEEE-E-------------eCCeEEEEEcCcceeeeeee-cCCCcCEEEEEEee--
Q 001386 923 -QTPDGVMTLAPSETHIQFHKDQTRFLL-V-------------HETHLAIYEAEELTCLKQWF-PISSVPISQATFSC-- 984 (1088)
Q Consensus 923 -~~~~~~~~~~~~v~~~~fs~dg~~l~~-~-------------~d~~i~vwd~~~~~~~~~~~-~~h~~~v~~l~fs~-- 984 (1088)
..+.+... ..+. .-.+++.++ + .-|.|-+||.. |..++++. .+.-.....|+..|
T Consensus 183 P~iPagyAP-----FnIq-nig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~ 255 (336)
T TIGR03118 183 PALPAGYAP-----FNVQ-NLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPES 255 (336)
T ss_pred CCCCCCCCC-----cceE-EECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhh
Confidence 00111110 0110 012333333 2 23579999976 66666542 33344556667654
Q ss_pred ----CCCEEEEEeCCCcEEEEEcCCCceEEEecc
Q 001386 985 ----DCRMVFTSFVDGTLSIHEASNLEVQCRILS 1014 (1088)
Q Consensus 985 ----dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 1014 (1088)
.|.+|+---.||+|.++|..+|..+..+..
T Consensus 256 FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 256 FGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred hCCCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 677888777899999999999998877763
No 430
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.10 E-value=0.097 Score=60.35 Aligned_cols=131 Identities=15% Similarity=0.189 Sum_probs=84.7
Q ss_pred ecccCCCCceeeeec----CCCCeEEEEEcccCcEEEEecC--CCcceeeeceeeeeeccccccceeeeecCCCCCeEEE
Q 001386 329 TLIEGSSSPMSMDFH----PVQHTLLLVGTNVGDTGLWDVN--SGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1088)
Q Consensus 329 ~l~~h~~~V~~v~~s----pdg~~lla~g~~dg~i~iwd~~--~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 402 (1088)
.++|-+++|-.++|- |.+.. + -|...|||+. .|+......+. ....-...+.-+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~~-~-----vg~lfVy~vd~l~G~iq~~l~v~--------------~~~p~gs~~~~V 186 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGRR-L-----VGELFVYDVDVLQGEIQPQLEVT--------------PITPYGSDPQLV 186 (1283)
T ss_pred HHhcCCCCcccccccccCChHHHH-H-----hhhhheeehHhhccccccceEEe--------------ecCcCCCCccee
Confidence 345777788888883 44431 2 2788899986 34433221111 122233444556
Q ss_pred EECC---CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEE-----------ecCCCCcEEEEEEeCCCcEE
Q 001386 403 VWSP---DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA-----------FSAPCKQISVITCGDDKTIK 468 (1088)
Q Consensus 403 ~~s~---dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~-----------~s~d~~~l~l~s~s~d~~i~ 468 (1088)
.|.| +..++..+-.+++|++.++++... . .+.+|...+..++ .||||+ .++.+..||.++
T Consensus 187 ~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~--l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~ 260 (1283)
T KOG1916|consen 187 SWCPIAVNKVYICYGLKGGEIRLLNINRALR--S--LFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVG 260 (1283)
T ss_pred eecccccccceeeeccCCCceeEeeechHHH--H--HHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccc
Confidence 6655 678888888889988877776432 1 3557887777665 489999 899999999988
Q ss_pred EEeCC-----CCceeEEeccCC
Q 001386 469 VWDAV-----TGSRTYSFEGHG 485 (1088)
Q Consensus 469 vwd~~-----~~~~~~~~~~~~ 485 (1088)
+|.+. .-+|++..+.|.
T Consensus 261 f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 261 FYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eeeeeeeccccHhhhhccCCCC
Confidence 88653 334666677776
No 431
>PHA03098 kelch-like protein; Provisional
Probab=93.76 E-value=2.4 Score=50.25 Aligned_cols=153 Identities=8% Similarity=-0.005 Sum_probs=73.4
Q ss_pred CceEEEEEecC-----CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCC--ceeEEEEeCCCCceeEE
Q 001386 498 NIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG--ESFLVEWNESEGAIKRT 570 (1088)
Q Consensus 498 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~--~~~i~iwd~~~~~~~~~ 570 (1088)
++...+.|+.+ ..+..||..+..-......+.......+..-+++..+.||....+ ...+..||+.+.+....
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 45677777765 246677766543222111111111111223456666666632221 24588899887654332
Q ss_pred EeccccccccEEEEEEeCCCCEEEEEeCC--------CcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC
Q 001386 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDD--------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1088)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1088)
-.... .... .++ ...++..++.|+.+ ..+.+||..+++....-..... .....+..-++++++.|+.
T Consensus 422 ~~~p~-~r~~-~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--r~~~~~~~~~~~iyv~GG~ 496 (534)
T PHA03098 422 SPLPI-SHYG-GCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP--RINASLCIFNNKIYVVGGD 496 (534)
T ss_pred CCCCc-cccC-ceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc--cccceEEEECCEEEEEcCC
Confidence 21111 0011 122 22345555666532 2388889887765433221111 1111122236777777765
Q ss_pred C-----CcEEEEeCCCCC
Q 001386 643 E-----NRIKILETPESN 655 (1088)
Q Consensus 643 d-----g~i~iwd~~~~~ 655 (1088)
+ ..+.+||..+.+
T Consensus 497 ~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 497 KYEYYINEIEVYDDKTNT 514 (534)
T ss_pred cCCcccceeEEEeCCCCE
Confidence 4 467778777653
No 432
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.73 E-value=9.5 Score=42.58 Aligned_cols=202 Identities=11% Similarity=0.003 Sum_probs=108.3
Q ss_pred EecCCCEEEEEeCCcEEEEEcCCceeEEEecCCC--CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccc-
Q 001386 806 LSKNDAYLFSASGGVISLYIVMTFKTILTIMPPS--PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS- 882 (1088)
Q Consensus 806 ~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~- 882 (1088)
..-+++.++...+|.|.-.|..+++.+....... ..+..-.+.. +|+ +..++.+|.++.+|..+|+.+.......
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 3446666666668888888888888665443221 2233333333 565 7778899999999998999887776555
Q ss_pred CCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEc
Q 001386 883 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH--ETHLAIYEA 960 (1088)
Q Consensus 883 ~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~--d~~i~vwd~ 960 (1088)
-.+..-..-.++..++ ++.++.+.-.+-.+++..-.......... .+..-....++..++... ++.+.-.|.
T Consensus 143 ~~~~~~~v~~~~~v~~-~s~~g~~~al~~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~~~vy~~~~~~~~~~~a~~~ 216 (370)
T COG1520 143 PYYASPPVVGDGTVYV-GTDDGHLYALNADTGTLKWTYETPAPLSL-----SIYGSPAIASGTVYVGSDGYDGILYALNA 216 (370)
T ss_pred eEEecCcEEcCcEEEE-ecCCCeEEEEEccCCcEEEEEecCCcccc-----ccccCceeecceEEEecCCCcceEEEEEc
Confidence 1122222222332222 23566666666665543221111110000 011111134444444433 456777788
Q ss_pred CcceeeeeeecCCCcCEE---EEEEee-----CCCEEEEEeCCCcEEEEEcCCCceEEEeccc
Q 001386 961 EELTCLKQWFPISSVPIS---QATFSC-----DCRMVFTSFVDGTLSIHEASNLEVQCRILST 1015 (1088)
Q Consensus 961 ~~~~~~~~~~~~h~~~v~---~l~fs~-----dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 1015 (1088)
.+|.........+...-+ ...... .+.-+..++.++.+...+..+|+.+.+....
T Consensus 217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred cCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 788777663221111100 011111 1222356777888999999999999887743
No 433
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.65 E-value=1.7 Score=50.56 Aligned_cols=112 Identities=13% Similarity=0.181 Sum_probs=76.8
Q ss_pred CEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEec-cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECC----
Q 001386 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD---- 517 (1088)
Q Consensus 443 ~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~---- 517 (1088)
...-+.-|.-++ ..+.-+...++.|||...+.....-. ...+.|.++.|...++++.+++.+..+.|.++--.
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 344455555555 34444445589999998887554332 35789999999999999999999999999998431
Q ss_pred -CCC----ceE--EecC-CCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001386 518 -SLG----ARV--DYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 518 -~~~----~~~--~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 562 (1088)
... ... .+.. ..++|....|.++|..++.++ +.+.++|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG------Nqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG------NQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC------CEEEEECC
Confidence 111 111 1222 335788999999998887764 24778774
No 434
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=93.52 E-value=10 Score=40.17 Aligned_cols=188 Identities=11% Similarity=0.074 Sum_probs=104.3
Q ss_pred eeEEEEecCCCEEEEEeC-------------CcEEEEEcCCceeEEEecCC------CCCeEEEEEcCCCC----cEEEE
Q 001386 801 VPCFALSKNDAYLFSASG-------------GVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDN----NVIAI 857 (1088)
Q Consensus 801 v~~~~~s~dg~~l~~~~d-------------g~i~iwd~~~~~~~~~~~~~------~~~i~~l~~sp~d~----~~las 857 (1088)
|..+.+.+++++-+.-+. -+|.+||+.+++.++++.-+ .+....+++...++ .++..
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 455666666665554321 15889999999988876532 34567777765222 24443
Q ss_pred Ee-CCCeEEEEEcCCceeeeeeccc-------------------cCCeeEEEECC---CCCEEEEEeCCCcEEEEEcCCC
Q 001386 858 GM-DDSTILIYNARSSEVISKLEGH-------------------SKRVTGLVFSD---ALNILVSSGGDAQIFVWDVDGW 914 (1088)
Q Consensus 858 g~-~dg~i~lwd~~~~~~~~~l~~h-------------------~~~V~~l~~s~---dg~~las~s~Dg~i~iwd~~~~ 914 (1088)
.. ..+.|.|+|+.+++.-+.+..+ ...+..++.+| ||++|....-.+ -++|.+.+.
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~ 161 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS 161 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Confidence 33 3358999999998754444322 12366677765 777777666544 356665542
Q ss_pred ceeee-----e----eeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcce---eeeeee-cCC-CcCEEE
Q 001386 915 GIQTC-----R----SLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELT---CLKQWF-PIS-SVPISQ 979 (1088)
Q Consensus 915 ~~~~~-----~----~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~---~~~~~~-~~h-~~~v~~ 979 (1088)
..... . .++.. |... .....++++++|.+..+ ...+.|..|+..+.- ....+. ... -..+..
T Consensus 162 ~L~~~~~~~~~~~~~~v~~l-G~k~--~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~ 238 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDL-GDKG--SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDG 238 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEE-EE-----SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEE
T ss_pred HhhCccccccccccccceec-cccC--CCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccce
Confidence 11110 0 01111 0000 13567899999998888 577899999988621 111111 122 456788
Q ss_pred EEEee--CCCEEEEE
Q 001386 980 ATFSC--DCRMVFTS 992 (1088)
Q Consensus 980 l~fs~--dg~~l~s~ 992 (1088)
+.+.+ +|.+.+..
T Consensus 239 ~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 239 LKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEE-T--TS-EEEEE
T ss_pred eeeccccCceEEEEE
Confidence 88888 77666554
No 435
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.50 E-value=1 Score=54.01 Aligned_cols=146 Identities=8% Similarity=0.058 Sum_probs=94.9
Q ss_pred CCCeeEEEEecCCCEEEEEe--CC-cEEEEEcCCceeEE-----EecCC------CCCeEEEEEcCCCCcEEEEEeCCCe
Q 001386 798 QEAVPCFALSKNDAYLFSAS--GG-VISLYIVMTFKTIL-----TIMPP------SPTATSLAFNPHDNNVIAIGMDDST 863 (1088)
Q Consensus 798 ~~~v~~~~~s~dg~~l~~~~--dg-~i~iwd~~~~~~~~-----~~~~~------~~~i~~l~~sp~d~~~lasg~~dg~ 863 (1088)
.-.+..+...+|+...++.. +| .|..||+.+...-. .+..| .....++.|.|.=....++...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 44667778888887766654 33 58999987543221 12222 1234677787743345566778899
Q ss_pred EEEEEcCCce-eeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcC
Q 001386 864 ILIYNARSSE-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 942 (1088)
Q Consensus 864 i~lwd~~~~~-~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~ 942 (1088)
|++..+.-.. .+..+. -...+++++|+|.|+.++.|-..|++.-|.-.-.......+....+ ...|.+++|-.
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e-----~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEE-----NYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCC-----CcceeEEEEec
Confidence 9888765432 223333 4456899999999999999999999988876653222222222222 24799999988
Q ss_pred CCCEEEE
Q 001386 943 DQTRFLL 949 (1088)
Q Consensus 943 dg~~l~~ 949 (1088)
.-.++++
T Consensus 254 t~eflvv 260 (1405)
T KOG3630|consen 254 TQEFLVV 260 (1405)
T ss_pred ceeEEEE
Confidence 8888887
No 436
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.47 E-value=2.2 Score=45.86 Aligned_cols=145 Identities=8% Similarity=0.057 Sum_probs=88.8
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc--eeeeee-ccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceee
Q 001386 842 ATSLAFNPHDNNVIAIGMDDSTILIYNARSS--EVISKL-EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT 918 (1088)
Q Consensus 842 i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~--~~~~~l-~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~ 918 (1088)
.+.+-|.. .++.|+ +...|.+.=|-+... ...-.+ ....++|.++.||+|.+.||.--.|.+|.+.+....+...
T Consensus 25 sngvFfDD-aNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 25 SNGVFFDD-ANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred ccceeecc-CcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 35566654 333333 333444555544321 111222 2356799999999999999999999999999985433111
Q ss_pred eeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEe
Q 001386 919 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 993 (1088)
Q Consensus 919 ~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s 993 (1088)
..... +......|...+|+.. .-+|...+..+-+|.+.....-......|...|.-..|.++.+.++-++
T Consensus 103 ~~~~~----ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 103 EYTQE----CKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HHHHH----hccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 11111 1111124788888877 6667666777777776644433334566788888889999887754443
No 437
>PHA03098 kelch-like protein; Provisional
Probab=93.24 E-value=3.3 Score=49.02 Aligned_cols=188 Identities=10% Similarity=-0.003 Sum_probs=93.8
Q ss_pred cCCCEEEEEe-C------CcEEEEEcCCceeEEE--ecCCCCCeEEEEEcCCCCcEEEEEeCCC-----eEEEEEcCCce
Q 001386 808 KNDAYLFSAS-G------GVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSE 873 (1088)
Q Consensus 808 ~dg~~l~~~~-d------g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~i~lwd~~~~~ 873 (1088)
.++..++.|+ + ..+..||..+.+-... +..+......+++ ++++++.|+.++ .+..||..+.+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 4556666664 2 2477888776543221 1111122222222 677888888763 57788887654
Q ss_pred e--eeeeccccCCeeEEEECCCCCEEEEEeCC------CcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCC
Q 001386 874 V--ISKLEGHSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 945 (1088)
Q Consensus 874 ~--~~~l~~h~~~V~~l~~s~dg~~las~s~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~ 945 (1088)
- ...+.........+ .-++++.+.||.+ ..+..||..+.+-.....+ +... ..+.+...+++
T Consensus 370 W~~~~~lp~~r~~~~~~--~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~--p~~r------~~~~~~~~~~~ 439 (534)
T PHA03098 370 WREEPPLIFPRYNPCVV--NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL--PISH------YGGCAIYHDGK 439 (534)
T ss_pred eeeCCCcCcCCccceEE--EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCC--Cccc------cCceEEEECCE
Confidence 2 22222111111112 2366777777732 3578889887543221111 1111 11223334666
Q ss_pred EEEEEe-C--------CeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCC-----CcEEEEEcCCCceE
Q 001386 946 RFLLVH-E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQ 1009 (1088)
Q Consensus 946 ~l~~~~-d--------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~d-----g~v~vwd~~~~~~~ 1009 (1088)
..+.|. + ..+.+||..+++-...........-.++ ...+++.++.|+.+ +.|.+||..+....
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASL-CIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceE-EEECCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 666642 1 2388899887653222111111111111 22377777777654 46888888877643
No 438
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.23 E-value=1.1 Score=51.83 Aligned_cols=118 Identities=19% Similarity=0.351 Sum_probs=78.8
Q ss_pred cccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEEC--CC
Q 001386 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS--PD 407 (1088)
Q Consensus 330 l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s--~d 407 (1088)
+...-....-+.-|.-++ +.++.+...++.|||...+....... + ...+.|.++.|. ||
T Consensus 25 ~~T~i~~~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~-----------------f-~~~~~I~dLDWtst~d 85 (631)
T PF12234_consen 25 FETGISNPSLISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEES-----------------F-SEDDPIRDLDWTSTPD 85 (631)
T ss_pred EecCCCCcceEeecccCc-EEEEECCCCEEEEEEcCCcEEEEeee-----------------e-cCCCceeeceeeecCC
Confidence 333334566666666676 56666666789999999887554422 2 357889999996 58
Q ss_pred CCEEEEEeCCCEEEEEEc-----cCC-C---cccceeEeccCC-CCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 408 GSLLGVAYSKHIVQLYAY-----HGG-S---DARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 408 g~~las~~~dg~i~vwd~-----~~~-~---~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
|+.+.+.+..+.|.+|.- ... . .++.+ .+..|+ .+|.+..|.++|. ++.|+ .+.+.|+|
T Consensus 86 ~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i-~i~~~T~h~Igds~Wl~~G~---LvV~s-GNqlfv~d 154 (631)
T PF12234_consen 86 GQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKI-DISSHTPHPIGDSIWLKDGT---LVVGS-GNQLFVFD 154 (631)
T ss_pred CCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEE-EeecCCCCCccceeEecCCe---EEEEe-CCEEEEEC
Confidence 999988889999988743 111 1 12222 234454 5899999999997 44343 45688887
No 439
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.02 E-value=27 Score=42.42 Aligned_cols=121 Identities=12% Similarity=-0.040 Sum_probs=75.6
Q ss_pred EEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCC-CcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC-ceEEEeccc
Q 001386 938 IQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNL-EVQCRILST 1015 (1088)
Q Consensus 938 ~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~-~~~~~~~~~ 1015 (1088)
.+..|-..++++|....+++||+-..+.++.....+ ...|+.+++ .+..+++|.....|.++..... ..+..+. .
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fa-d 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFA-D 1015 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEe-C
Confidence 466677778888888999999999888777655444 556666665 4567888876666665444433 2222332 1
Q ss_pred cccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCCccccCCCC
Q 001386 1016 AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1070 (1088)
Q Consensus 1016 ~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~~~~~~~~~~~ 1070 (1088)
... .-+..++.+- |.+.++.|..=|.+.+-.++..-.+-....|.+
T Consensus 1016 D~~-------pR~Vt~~~~l--D~~tvagaDrfGNi~~vR~P~d~~e~~~edpt~ 1061 (1205)
T KOG1898|consen 1016 DPV-------PRHVTALELL--DYDTVAGADRFGNIAVVRIPPDVSEEASEDPTE 1061 (1205)
T ss_pred CCc-------cceeeEEEEe--cCCceeeccccCcEEEEECCCcchhhhccCCcc
Confidence 111 1223334333 567899999989999988876555444444433
No 440
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.94 E-value=1.8 Score=47.40 Aligned_cols=108 Identities=16% Similarity=0.083 Sum_probs=71.0
Q ss_pred CcCEEEEEEeeCCCEEEEEeCCCcEEEEE---------cCCCc--eEEEeccccccCCCCccccccceEEEECCCC--CC
Q 001386 974 SVPISQATFSCDCRMVFTSFVDGTLSIHE---------ASNLE--VQCRILSTAYLRPTTSCLHVYPHAIAAHPLK--PT 1040 (1088)
Q Consensus 974 ~~~v~~l~fs~dg~~l~s~s~dg~v~vwd---------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d--~~ 1040 (1088)
.-.|..+..|+.|..++-++.+|.+.++= +..|+ ..|+..+.....- .+...+....++|+|+. ..
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~f-tss~~ltl~Qa~WHP~S~~D~ 181 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFF-TSSTSLTLKQAAWHPSSILDP 181 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceee-ccCCceeeeeccccCCccCCc
Confidence 34577888899999999999998655432 33442 3344332211100 11233455678899943 35
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCccccCCCCccCCCCCCCccC
Q 001386 1041 QFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEG 1082 (1088)
Q Consensus 1041 ~l~~~~~dg~v~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1082 (1088)
.|..-..|..+++|++++..-.|..+++.-+.++....-|=|
T Consensus 182 hL~iL~sdnviRiy~lS~~telylqpgepgRS~tn~Si~sFG 223 (741)
T KOG4460|consen 182 HLVLLTSDNVIRIYSLSEPTELYLQPGEPGRSPTNVSILSFG 223 (741)
T ss_pred eEEEEecCcEEEEEecCCcchhhccCCCcCCCCccceeeccC
Confidence 677788999999999999998999888877776655544433
No 441
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.90 E-value=3.7 Score=45.62 Aligned_cols=147 Identities=9% Similarity=0.071 Sum_probs=77.6
Q ss_pred CCeeEEEECCCCCEEEEEe-----------CCC-cEEEEEcCC--CceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEE
Q 001386 883 KRVTGLVFSDALNILVSSG-----------GDA-QIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 948 (1088)
Q Consensus 883 ~~V~~l~~s~dg~~las~s-----------~Dg-~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~ 948 (1088)
.....|+|.++|+++++-. ..+ .|.+++-.. ++......+.. +. .....++|.++| +++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~--~l----~~p~Gi~~~~~G-lyV 86 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE--EL----SMVTGLAVAVGG-VYV 86 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec--CC----CCccceeEecCC-EEE
Confidence 3456789999998877653 123 566665432 22222222221 11 135789999999 555
Q ss_pred EEeCCeEEEE-EcCc-------ceeeeeeecC----CCcCEEEEEEeeCCCEEEEEeCC-------------------Cc
Q 001386 949 LVHETHLAIY-EAEE-------LTCLKQWFPI----SSVPISQATFSCDCRMVFTSFVD-------------------GT 997 (1088)
Q Consensus 949 ~~~d~~i~vw-d~~~-------~~~~~~~~~~----h~~~v~~l~fs~dg~~l~s~s~d-------------------g~ 997 (1088)
+. ...|..| |... .+.+..-+.. +......++|.|||.+.++-+.. |.
T Consensus 87 ~~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~ 165 (367)
T TIGR02604 87 AT-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG 165 (367)
T ss_pred eC-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce
Confidence 43 4445544 4431 1122221211 23457789999999876655521 33
Q ss_pred EEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCC
Q 001386 998 LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG 1049 (1088)
Q Consensus 998 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg 1049 (1088)
|.-++..+++.. .+. . .--.+..++|+| +|+++++-..++
T Consensus 166 i~r~~pdg~~~e-~~a------~----G~rnp~Gl~~d~-~G~l~~tdn~~~ 205 (367)
T TIGR02604 166 LFRYNPDGGKLR-VVA------H----GFQNPYGHSVDS-WGDVFFCDNDDP 205 (367)
T ss_pred EEEEecCCCeEE-EEe------c----CcCCCccceECC-CCCEEEEccCCC
Confidence 444444444321 111 1 112356689999 788877654444
No 442
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=92.67 E-value=1.8 Score=46.40 Aligned_cols=158 Identities=10% Similarity=0.078 Sum_probs=97.0
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeE-EEec-CCCC----CeE-EEEEcCCCCcEEEEEeCCCeEEEE-E
Q 001386 797 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI-LTIM-PPSP----TAT-SLAFNPHDNNVIAIGMDDSTILIY-N 868 (1088)
Q Consensus 797 ~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~-~~~~-~~~~----~i~-~l~~sp~d~~~lasg~~dg~i~lw-d 868 (1088)
....+..+-..|||+.+.+-+..++.++++.+.... +++. ...+ .|+ ++..-. ++.-+.+++.||-|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 455677888999999999988889999998754322 1111 1111 122 222233 67788889999988877 4
Q ss_pred cCCc-e----eeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCC
Q 001386 869 ARSS-E----VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 943 (1088)
Q Consensus 869 ~~~~-~----~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d 943 (1088)
+..+ . .+..++-...++.-+.--.+.+-+++-+..|++.++.....+ .+-..... ..+..+++||.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~-----~lL~~~~~----~~~~~~~~Sp~ 368 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEK-----LLLFERAY----QAPQLVAMSPN 368 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCc-----ceehhhhh----cCcceeeeCcc
Confidence 4332 2 112222222333333333344557778888888887655422 11111111 13678999999
Q ss_pred CCEEEEEeCCeEEEEEcCcce
Q 001386 944 QTRFLLVHETHLAIYEAEELT 964 (1088)
Q Consensus 944 g~~l~~~~d~~i~vwd~~~~~ 964 (1088)
+.++++-..++++++.+++..
T Consensus 369 ~~~Ll~e~~gki~~~~l~Nr~ 389 (733)
T COG4590 369 QAYLLSEDQGKIRLAQLENRN 389 (733)
T ss_pred cchheeecCCceEEEEecCCC
Confidence 999999888999999877543
No 443
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.29 E-value=8.6 Score=37.79 Aligned_cols=112 Identities=12% Similarity=0.186 Sum_probs=68.2
Q ss_pred CeeEEEEecCCCEEEEEeCCcEEEEEcC--CceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC------eEEEE---E
Q 001386 800 AVPCFALSKNDAYLFSASGGVISLYIVM--TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS------TILIY---N 868 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg------~i~lw---d 868 (1088)
....++.+..+.++++++...|.+|++. ..+...++..- +.|..++++. .|++|++--.+. .+|+| .
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhh
Confidence 4445555554555555678889999987 44556666644 7899999999 799999853322 55664 2
Q ss_pred cC--Cceee-eeeccc---------------------cCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 001386 869 AR--SSEVI-SKLEGH---------------------SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 914 (1088)
Q Consensus 869 ~~--~~~~~-~~l~~h---------------------~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~ 914 (1088)
.. ..+.+ .++-|| +.++.+++..|-..-|+.|+ ++.+.+|.+...
T Consensus 97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence 22 11111 122232 23566777766444444454 456999998763
No 444
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.25 E-value=4.2 Score=47.82 Aligned_cols=173 Identities=13% Similarity=0.109 Sum_probs=94.8
Q ss_pred CCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEE
Q 001386 810 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLV 889 (1088)
Q Consensus 810 g~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~ 889 (1088)
+.+++++..+.|.||+........ ...++..+...| .+ +...|+.+..|- ..|+ |+.|.
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p----~~~p~~~~~t~p---~~--~~~~D~~~s~~p----------~PHt--IN~i~ 107 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLP----SRKPCLRFDTKP---EF--TSTPDRLISTWP----------FPHT--INFIK 107 (717)
T ss_pred CCEEEEEECCEEEEEecCCccccc----ccccccccccCc---cc--cccccccccCCC----------CCce--eeEEE
Confidence 788999999999999986432211 001112222222 11 122343333332 1122 33333
Q ss_pred EC--CCCCEEEEEeCCCcEEEEEcCCCc---------ee--eeeeeecCCCCccCCCCeEEEEEc--CCCCEEEEEeCC-
Q 001386 890 FS--DALNILVSSGGDAQIFVWDVDGWG---------IQ--TCRSLQTPDGVMTLAPSETHIQFH--KDQTRFLLVHET- 953 (1088)
Q Consensus 890 ~s--~dg~~las~s~Dg~i~iwd~~~~~---------~~--~~~~~~~~~~~~~~~~~v~~~~fs--~dg~~l~~~~d~- 953 (1088)
.. -+...|+.|.+||.|.+|.+++-- .. ..+..-.+.-+.......+++++. ...++||+++++
T Consensus 108 v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~ 187 (717)
T PF08728_consen 108 VGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQ 187 (717)
T ss_pred ecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCc
Confidence 32 245678888889999999763200 00 000000011111122468999998 888889987554
Q ss_pred eEEEEEcCc--ceeeeeeecCCCcCEEEEEEeeCC---C---EEEEEeCCCcEEEEEc
Q 001386 954 HLAIYEAEE--LTCLKQWFPISSVPISQATFSCDC---R---MVFTSFVDGTLSIHEA 1003 (1088)
Q Consensus 954 ~i~vwd~~~--~~~~~~~~~~h~~~v~~l~fs~dg---~---~l~s~s~dg~v~vwd~ 1003 (1088)
.|.||-... .+........|...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 188 ~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 188 EVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 566665443 222111122357889999998744 2 7888889999998887
No 445
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.98 E-value=17 Score=37.68 Aligned_cols=214 Identities=11% Similarity=0.105 Sum_probs=122.6
Q ss_pred CEEEEEecCCCCcEEEEEEeCCCcEEEEeCC------CCc-eeEEecc-----CCccEEEEeeeeeC------Cc----e
Q 001386 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAV------TGS-RTYSFEG-----HGAPVYSLCPHAKE------NI----H 500 (1088)
Q Consensus 443 ~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~------~~~-~~~~~~~-----~~~~v~~~~~~~~~------~~----~ 500 (1088)
.-+.|+|+|.+. +-++...-+...+||.. ..+ .+-++.. .....+.+.|+... ++ .
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 457899999887 66666667889999976 122 2333332 12345555554221 11 2
Q ss_pred EEEEEecCCeEEEEECCCCCc-----eEEecCC-CC-ceEEEEEcc--CCCEEEEEeeCCCCceeEEEEeCCCCcee--E
Q 001386 501 FIFSISVDGKIKAWLYDSLGA-----RVDYDAP-GL-GCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIK--R 569 (1088)
Q Consensus 501 ~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~-~~-~v~~~~~s~--~g~~l~~~~~~~~~~~~i~iwd~~~~~~~--~ 569 (1088)
.++.+++||+|.-|...-... ...+... .. -...+++.. .+.+|+.+-. ..++|.++|-.-.... .
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 478889999999997432222 2223221 22 234455543 3667766643 2566888885433221 0
Q ss_pred EEeccc--ccccc-----------EEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec----
Q 001386 570 TYQGLQ--LQHNS-----------VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---- 632 (1088)
Q Consensus 570 ~~~~~~--~~~~~-----------v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---- 632 (1088)
.+.... ..-.+ |+...-.++++.=+.+..-|.|-+||. .|+.++++...+....-+.++..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 011100 00000 111111222222333445578999997 578888887666666667788766
Q ss_pred --CCCEEEEEeCCCcEEEEeCCCCCccccccc
Q 001386 633 --NGTLLAVIANENRIKILETPESNSVDAAGV 662 (1088)
Q Consensus 633 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 662 (1088)
.+.+|+---.||+|..+|..+++.+..+..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 467777777799999999998876665553
No 446
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.97 E-value=11 Score=36.40 Aligned_cols=175 Identities=15% Similarity=0.073 Sum_probs=95.5
Q ss_pred EEEEEeCCC--cEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEE
Q 001386 457 SVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR 534 (1088)
Q Consensus 457 ~l~s~s~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 534 (1088)
++.+.+.-| .|++||+.+|+.+.+-.-....+..=-.....| .+-.-.-.+|.-..+|.++.+....+...+.. +
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd-~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG-W- 134 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGD-YFYQLTWKEGVAFKYDADTLEELGRFSYEGEG-W- 134 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccc-eEEEEEeccceeEEEChHHhhhhcccccCCcc-e-
Confidence 566655443 699999999998865542211111111111112 23334456788888988887776655544432 1
Q ss_pred EEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEecccc--ccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCee
Q 001386 535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612 (1088)
Q Consensus 535 ~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 612 (1088)
....|++.|+.+ +|..+++.-|+++.....+...... .-..++-+.|- +|...+-.=.+..|...+.++|+.
T Consensus 135 -gLt~d~~~Lims----dGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 135 -GLTSDDKNLIMS----DGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred -eeecCCcceEee----CCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcE
Confidence 234566666665 4466788888876554444332110 01233444443 344444444455566667777777
Q ss_pred eEEEeCCC----------CCCCCceEEEecCC-CEEEEE
Q 001386 613 LTTIDAGG----------GLPENPRICFNKNG-TLLAVI 640 (1088)
Q Consensus 613 ~~~~~~~~----------~~~~v~~v~~s~~~-~~l~~~ 640 (1088)
+..+...+ +....+.+++.|++ +++++|
T Consensus 209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 66554321 12235678888876 455554
No 447
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.86 E-value=16 Score=37.06 Aligned_cols=195 Identities=12% Similarity=0.114 Sum_probs=126.8
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 001386 841 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR 920 (1088)
Q Consensus 841 ~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~ 920 (1088)
.-..++-+| ||..-.++...|.|--.|..+|+....--+....-..|..-|||...++-+.. -|.-.|-++.+...
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~-- 138 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR-- 138 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE--
Confidence 345577788 78888888888888888888888766555555556778888999887765443 34445555544222
Q ss_pred eeecCCCCccCCCCeEEEEEcCCCCEEEEEeCC----------eEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEE
Q 001386 921 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----------HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF 990 (1088)
Q Consensus 921 ~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~----------~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~ 990 (1088)
+.....+.. .......|.++|++-.++..| .|++|+.. .......++..|||..-+
T Consensus 139 -f~lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP-----------qG~gpyGi~atpdGsvwy 204 (353)
T COG4257 139 -FPLPLEHAD--ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP-----------QGGGPYGICATPDGSVWY 204 (353)
T ss_pred -eecccccCC--CcccceeeCCCccEEEeeccccceecCcccCceeeeccC-----------CCCCCcceEECCCCcEEE
Confidence 222222222 357789999999999886432 35555543 244566789999999888
Q ss_pred EEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCCcc
Q 001386 991 TSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWA 1064 (1088)
Q Consensus 991 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~~~~~ 1064 (1088)
+.-.++.|..-|-.++... .+.....+..+ +..+--+| -|..-++....|.++.+|.+... |.
T Consensus 205 aslagnaiaridp~~~~ae-v~p~P~~~~~g-------sRriwsdp-ig~~wittwg~g~l~rfdPs~~s--W~ 267 (353)
T COG4257 205 ASLAGNAIARIDPFAGHAE-VVPQPNALKAG-------SRRIWSDP-IGRAWITTWGTGSLHRFDPSVTS--WI 267 (353)
T ss_pred EeccccceEEcccccCCcc-eecCCCccccc-------ccccccCc-cCcEEEeccCCceeeEeCccccc--ce
Confidence 7777888888887777322 22212211222 12243456 57888888888899988886644 64
No 448
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.69 E-value=10 Score=47.12 Aligned_cols=146 Identities=18% Similarity=0.209 Sum_probs=95.3
Q ss_pred eCCCeEEEEEcCCceeeeeeccccCCeeEEEE--------CCCCCEEEEEeCCCcEEEEEcCCCceeeeee-----eecC
Q 001386 859 MDDSTILIYNARSSEVISKLEGHSKRVTGLVF--------SDALNILVSSGGDAQIFVWDVDGWGIQTCRS-----LQTP 925 (1088)
Q Consensus 859 ~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~--------s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~-----~~~~ 925 (1088)
+.|+.+.+|+..++.....+.+-+..|..|.. -|.=++|...+.--.|.++-+.-.+...... ++..
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 35788999999998878888887777777654 3333555555555567777665433211111 1111
Q ss_pred CCCccCCCCeEEEEEcCCCCEEEEEeCCeEE--EEEcCcc---e-eee----------------eeecCCCcCEEEEEEe
Q 001386 926 DGVMTLAPSETHIQFHKDQTRFLLVHETHLA--IYEAEEL---T-CLK----------------QWFPISSVPISQATFS 983 (1088)
Q Consensus 926 ~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~--vwd~~~~---~-~~~----------------~~~~~h~~~v~~l~fs 983 (1088)
.. +..|.++....+|+.+.+|.||.|+ +|...+| + |-. ++...+..+|..++..
T Consensus 176 ~d----g~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 176 VD----GVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred cC----CceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 11 1358899999999999999998544 2233322 1 111 1112457789999998
Q ss_pred eCCCEEEEEeCCCcEEEEEcCC-Cce
Q 001386 984 CDCRMVFTSFVDGTLSIHEASN-LEV 1008 (1088)
Q Consensus 984 ~dg~~l~s~s~dg~v~vwd~~~-~~~ 1008 (1088)
..-..+.+-+..|+|++|++.. |..
T Consensus 252 ~SR~IlY~lsek~~v~~Y~i~~~G~~ 277 (1311)
T KOG1900|consen 252 NSRNILYVLSEKGTVSAYDIGGNGLG 277 (1311)
T ss_pred cccceeeeeccCceEEEEEccCCCcc
Confidence 8778889999999999999988 443
No 449
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.59 E-value=1.2 Score=47.86 Aligned_cols=103 Identities=11% Similarity=0.149 Sum_probs=74.4
Q ss_pred CCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEE
Q 001386 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1088)
Q Consensus 333 h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~la 412 (1088)
..++|.++.||+|.+ ++|+--.+.+|.+.+....+....... . .+..+..|....|+.+ .-+|
T Consensus 65 d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~------~---------ck~k~~~IlGF~W~~s-~e~A 127 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQ------E---------CKTKNANILGFCWTSS-TEIA 127 (657)
T ss_pred CCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHH------H---------hccCcceeEEEEEecC-eeEE
Confidence 345999999999998 899999999999999854443321110 0 1223456889999865 7788
Q ss_pred EEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCc
Q 001386 413 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ 455 (1088)
Q Consensus 413 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~ 455 (1088)
.....| +.+|-+...+ +..+..+.|...|.-..|.++.+-
T Consensus 128 ~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v 167 (657)
T KOG2377|consen 128 FITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAV 167 (657)
T ss_pred EEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccce
Confidence 777777 7888776543 333345678889999999999884
No 450
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.50 E-value=27 Score=38.95 Aligned_cols=151 Identities=9% Similarity=0.036 Sum_probs=85.0
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEcCCc--eeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 001386 843 TSLAFNPHDNNVIAIGMDDSTILIYNARSS--EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR 920 (1088)
Q Consensus 843 ~~l~~sp~d~~~lasg~~dg~i~lwd~~~~--~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~ 920 (1088)
..+..++ ++.+++.|..-..++-||-... +.+ ... ....++++.|.+++..++++ .+|.+ +|..+.++.-...
T Consensus 242 ~~v~~~~-dG~~~~vg~~G~~~~s~d~G~~~W~~~-~~~-~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~ 316 (398)
T PLN00033 242 STVNRSP-DGDYVAVSSRGNFYLTWEPGQPYWQPH-NRA-SARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDF 316 (398)
T ss_pred eeEEEcC-CCCEEEEECCccEEEecCCCCcceEEe-cCC-CccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccccc
Confidence 4455667 6777776654433333442211 111 222 34568999999999888755 56654 4444443211000
Q ss_pred eeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeee--cCCCcCEEEEEEeeCCCEEEEEeCCCcE
Q 001386 921 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF--PISSVPISQATFSCDCRMVFTSFVDGTL 998 (1088)
Q Consensus 921 ~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~--~~h~~~v~~l~fs~dg~~l~s~s~dg~v 998 (1088)
.+...... .....+..+.|.+++..++++..|.+.... ..|+.-.... ..-......+.|.++++-.++| .+|.|
T Consensus 317 ~f~~~~~~-~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~i 393 (398)
T PLN00033 317 DFEEADIK-SRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVL 393 (398)
T ss_pred ceeecccC-CCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEE
Confidence 11111100 001248899999999999999888776654 3444322222 2224578899998877766654 78877
Q ss_pred EEE
Q 001386 999 SIH 1001 (1088)
Q Consensus 999 ~vw 1001 (1088)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 655
No 451
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=91.45 E-value=15 Score=41.29 Aligned_cols=272 Identities=16% Similarity=0.083 Sum_probs=135.4
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~ 415 (1088)
.|.++.|.-.|. +-.|+.|| +..+|..+|+.+..... ....+|..+..+-.| .|.+|+
T Consensus 166 ~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~s~------------------~~dk~I~al~~d~qg-~LWVGT 223 (671)
T COG3292 166 PVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLASP------------------PLDKAINALIADVQG-RLWVGT 223 (671)
T ss_pred cceeeeeeccCc--EEEecCCc-ceEEccccceEEEcCCC------------------cchhhHHHHHHHhcC-cEEEEe
Confidence 789999999997 34556655 66777777776643110 012456656555545 456677
Q ss_pred CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe-ccCC--ccEEEEe
Q 001386 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHG--APVYSLC 492 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~-~~~~--~~v~~~~ 492 (1088)
.+| |.+.+.++.+..... ..-..+.|..+.=..+|. +-.|+..|..+ .....+...... +-|. ..|.++.
T Consensus 224 dqG-v~~~e~~G~~~sn~~--~~lp~~~I~ll~qD~qG~---lWiGTenGl~r-~~l~rq~Lq~~~~~~~l~~S~vnsL~ 296 (671)
T COG3292 224 DQG-VYLQEAEGWRASNWG--PMLPSGNILLLVQDAQGE---LWIGTENGLWR-TRLPRQGLQIPLSKMHLGVSTVNSLW 296 (671)
T ss_pred ccc-eEEEchhhccccccC--CCCcchheeeeecccCCC---EEEeeccccee-EecCCCCccccccccCCcccccccee
Confidence 777 788777763211100 011223454444444444 44455554332 233333322222 2222 2333333
Q ss_pred eeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEcc--CCCEEEEEeeCCCCceeEEEEeCCCCceeEE
Q 001386 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1088)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1088)
. +.+| -+-+++.+|.+++-+-+-..........+..+...+..| .+..+-... ..+.+.+-+..+|..++.
T Consensus 297 ~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~n----s~g~L~van~stG~~v~s 369 (671)
T COG3292 297 L--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLN----SIGELMVANGSTGELVRS 369 (671)
T ss_pred e--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeecc----ccceEEEecCCCCcEEEE
Confidence 3 3343 456666666666543321111111111122222222222 111111111 122355666677777766
Q ss_pred EeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCC-CeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEE
Q 001386 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1088)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1088)
..... ...|+.+++..+ ..+-.++...-+..|+..+ +..+...... ....|..+.=.|+++ |..|+.+|.++.
T Consensus 370 v~q~R--g~nit~~~~d~~-g~lWlgs~q~GLsrl~n~n~~avlde~agl-~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 370 VHQLR--GMNITTTLEDSR-GRLWLGSMQNGLSRLDNKNEWAVLDEDAGL-PSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred eeecc--ccccchhhhccC-CcEEEEecccchhhhccCCcccccccccCC-cccceeeeeecCCCC-EEEeccCCeEec
Confidence 44433 456777777774 4555566554466677666 3333333322 223577777788887 777888776553
No 452
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.31 E-value=0.73 Score=31.74 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=27.0
Q ss_pred CCeEEEEECCC-C--CEEEEEeCCCEEEEEEccCC
Q 001386 397 VSVNRVVWSPD-G--SLLGVAYSKHIVQLYAYHGG 428 (1088)
Q Consensus 397 ~~V~~l~~s~d-g--~~las~~~dg~i~vwd~~~~ 428 (1088)
++|.++.|||+ + ++||.+-..+.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 46899999984 4 58999888899999999863
No 453
>PHA02790 Kelch-like protein; Provisional
Probab=91.15 E-value=10 Score=43.96 Aligned_cols=185 Identities=11% Similarity=-0.016 Sum_probs=92.2
Q ss_pred cCCCEEEEEe-C-----CcEEEEEcCCceeEE--EecCCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEEcCCce--ee
Q 001386 808 KNDAYLFSAS-G-----GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSE--VI 875 (1088)
Q Consensus 808 ~dg~~l~~~~-d-----g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~~dg--~i~lwd~~~~~--~~ 875 (1088)
.++.++++|+ + ..+..||..+.+-.. .+.........++ - ++.+.++|+.++ .+..||..+++ .+
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~-~~~iYviGG~~~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--A-NNKLYVVGGLPNPTSVERWFHGDAAWVNM 346 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--E-CCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence 3455556664 2 247778877654222 2221222222222 2 678888888643 68888876543 22
Q ss_pred eeeccccCCeeEEEECCCCCEEEEEeCCC---cEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeC
Q 001386 876 SKLEGHSKRVTGLVFSDALNILVSSGGDA---QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 952 (1088)
Q Consensus 876 ~~l~~h~~~V~~l~~s~dg~~las~s~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d 952 (1088)
..+.........++ -+|++.+.||.++ .+..||..+..-.....+.... -...+..-+|+..++|
T Consensus 347 ~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r--------~~~~~~~~~~~IYv~G-- 414 (480)
T PHA02790 347 PSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH--------YKSCALVFGRRLFLVG-- 414 (480)
T ss_pred CCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc--------ccceEEEECCEEEEEC--
Confidence 33322121122222 3677888887654 4678888765432221111111 1122334566666665
Q ss_pred CeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCC-----CcEEEEEcCCCce
Q 001386 953 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEV 1008 (1088)
Q Consensus 953 ~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~d-----g~v~vwd~~~~~~ 1008 (1088)
|.+.+||..+++=.......+...-.++ ..-+|+..+.|+.+ .+|.+||..+++.
T Consensus 415 G~~e~ydp~~~~W~~~~~m~~~r~~~~~-~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 415 RNAEFYCESSNTWTLIDDPIYPRDNPEL-IIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred CceEEecCCCCcEeEcCCCCCCccccEE-EEECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 3567788776542211111111111122 23477777778754 3466777666553
No 454
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.06 E-value=10 Score=36.61 Aligned_cols=100 Identities=16% Similarity=0.119 Sum_probs=60.5
Q ss_pred CCCEEEEEe---CCcEEEEEcCCceeEEEecCCCCCeE--EEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccC
Q 001386 809 NDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTAT--SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK 883 (1088)
Q Consensus 809 dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~--~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~ 883 (1088)
+|.++.+.+ ...|++||+.+++.+..-.-....+. .+.-. +..+.+---.+|.-.++|..+-+++..+. -.+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLTWKEGVAFKYDADTLEELGRFS-YEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEEeccceeEEEChHHhhhhcccc-cCC
Confidence 556666654 45699999999998876543322221 11111 33455556678999999999988877665 233
Q ss_pred CeeEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 001386 884 RVTGLVFSDALNILVSSGGDAQIFVWDVDG 913 (1088)
Q Consensus 884 ~V~~l~~s~dg~~las~s~Dg~i~iwd~~~ 913 (1088)
.=..++ .|+.-|+.++...+++.-|-++
T Consensus 132 eGWgLt--~d~~~LimsdGsatL~frdP~t 159 (262)
T COG3823 132 EGWGLT--SDDKNLIMSDGSATLQFRDPKT 159 (262)
T ss_pred cceeee--cCCcceEeeCCceEEEecCHHH
Confidence 334444 3555566655555566655544
No 455
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.05 E-value=0.25 Score=57.18 Aligned_cols=177 Identities=16% Similarity=0.171 Sum_probs=100.3
Q ss_pred CcEEEEEcC--CceeEEEe-----cCCCCC---eEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEE
Q 001386 819 GVISLYIVM--TFKTILTI-----MPPSPT---ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 888 (1088)
Q Consensus 819 g~i~iwd~~--~~~~~~~~-----~~~~~~---i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l 888 (1088)
|.+.+||+. .|+....+ ...... |.-+-|-+ +.-++..+..+++|++....+... ..+.+|...+..+
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~-~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAV-NKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDM 230 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeeccccc-ccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccH
Confidence 567788765 34332222 222223 33333445 557888888899999877665432 5556687766665
Q ss_pred E-----------ECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCC-------C--EEE
Q 001386 889 V-----------FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ-------T--RFL 948 (1088)
Q Consensus 889 ~-----------~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg-------~--~l~ 948 (1088)
+ .||||..+|.++.||.++.|.+.-......+|+..-+.|.. .+-.|.-|.... . +++
T Consensus 231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p~vC~lc~~~~~~~v~i~~w~~~I 308 (1283)
T KOG1916|consen 231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HPRVCWLCHKQEILVVSIGKWVLRI 308 (1283)
T ss_pred HHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CCceeeeeccccccCCccceeEEEE
Confidence 4 58999999999999999999876433333444443333332 122222244332 2 233
Q ss_pred EEeC--CeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCE------------EEEEeCCCcEEEEEc
Q 001386 949 LVHE--THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM------------VFTSFVDGTLSIHEA 1003 (1088)
Q Consensus 949 ~~~d--~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~------------l~s~s~dg~v~vwd~ 1003 (1088)
++.| ..+++|.....+|+-.+. ...|..|. -+||+. +++-+-+++|.+|.-
T Consensus 309 tttd~nre~k~w~~a~w~Cll~~~---~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn 373 (1283)
T KOG1916|consen 309 TTTDVNREEKFWAEAPWQCLLDKL---IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQN 373 (1283)
T ss_pred ecccCCcceeEeeccchhhhhhhc---ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhc
Confidence 3444 458999988887763322 22333333 233331 233455778888853
No 456
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=91.02 E-value=19 Score=38.22 Aligned_cols=167 Identities=11% Similarity=0.074 Sum_probs=91.2
Q ss_pred cEEEEeCCCCceeEEecc------CCccEEEEeeeeeCC----ceEEEEEecCCeEEEEECCCCCceEEecCCC------
Q 001386 466 TIKVWDAVTGSRTYSFEG------HGAPVYSLCPHAKEN----IHFIFSISVDGKIKAWLYDSLGARVDYDAPG------ 529 (1088)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------ 529 (1088)
.|.+||+.+++.++++.- ..+.+..+.+...+. +...++-+..+-|.++|+.+++.........
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 577889999998877643 245677777765332 3445555556789999998876544332211
Q ss_pred -------------CceEEEEEcc---CCCEEEEEeeCCCCceeEEEEeCCC-----Cc---------eeEEEeccccccc
Q 001386 530 -------------LGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESE-----GA---------IKRTYQGLQLQHN 579 (1088)
Q Consensus 530 -------------~~v~~~~~s~---~g~~l~~~~~~~~~~~~i~iwd~~~-----~~---------~~~~~~~~~~~~~ 579 (1088)
..+..++.+| +|+.|+.....+ -.+|.+.+ .. .++.+ +.. ..
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-----~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k--~~ 186 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-----RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDK--GS 186 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT------SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE-----
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-----CcEEEEEHHHhhCccccccccccccceec-ccc--CC
Confidence 1255566654 666776655322 12222211 10 11111 111 13
Q ss_pred cEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC---eeeEEEeCCCC-CCCCceEEEec--CCCEEEEE
Q 001386 580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKV---QLLTTIDAGGG-LPENPRICFNK--NGTLLAVI 640 (1088)
Q Consensus 580 ~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~---~~~~~~~~~~~-~~~v~~v~~s~--~~~~l~~~ 640 (1088)
....++++++|..+++--..+.|..|+..+. +....+..... ......+.+.+ +|.+.+..
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 4567888899988888889999999998761 12222222222 33445677777 55544443
No 457
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.81 E-value=0.85 Score=31.44 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCC--cEEEEEeCCCeEEEEEcCC
Q 001386 840 PTATSLAFNPHDN--NVIAIGMDDSTILIYNARS 871 (1088)
Q Consensus 840 ~~i~~l~~sp~d~--~~lasg~~dg~i~lwd~~~ 871 (1088)
+.+.++.|||..+ .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999998555 6999998999999999985
No 458
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.36 E-value=12 Score=33.52 Aligned_cols=121 Identities=14% Similarity=0.058 Sum_probs=68.5
Q ss_pred eeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-----CCCEEEE
Q 001386 339 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-----DGSLLGV 413 (1088)
Q Consensus 339 ~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~-----dg~~las 413 (1088)
.-.|..... -|++++.-|.|.|.+.......... .-....+-.-...|++++-.+ +...|+.
T Consensus 3 iGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~------------~~~~i~~LNin~~italaaG~l~~~~~~D~Lli 69 (136)
T PF14781_consen 3 IGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGR------------QDSDISFLNINQEITALAAGRLKPDDGRDCLLI 69 (136)
T ss_pred EEEeCCCce-eEEEEecCCEEEEECCCcccccccc------------ccCceeEEECCCceEEEEEEecCCCCCcCEEEE
Confidence 334555555 4777778899999988654322110 000001222456788876544 3456777
Q ss_pred EeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecC---CCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001386 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1088)
Q Consensus 414 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~---d~~~l~l~s~s~d~~i~vwd~~~~~~~~ 479 (1088)
|+.. .+..||+.....+. ++.-...|.++.+-. .... +++.|+ +..|.-+|.+..+...
T Consensus 70 Gt~t-~llaYDV~~N~d~F----yke~~DGvn~i~~g~~~~~~~~-l~ivGG-ncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 70 GTQT-SLLAYDVENNSDLF----YKEVPDGVNAIVIGKLGDIPSP-LVIVGG-NCSIQGFDYEGNEIFW 131 (136)
T ss_pred eccc-eEEEEEcccCchhh----hhhCccceeEEEEEecCCCCCc-EEEECc-eEEEEEeCCCCcEEEE
Confidence 6554 59999999876543 334456777777622 1122 444444 6778878754444333
No 459
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.10 E-value=36 Score=37.98 Aligned_cols=199 Identities=16% Similarity=0.126 Sum_probs=103.9
Q ss_pred EEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCc-cEE
Q 001386 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA-PVY 489 (1088)
Q Consensus 411 las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~-~v~ 489 (1088)
+.++..+|.|.-.|.+++..+-..... +....+..-.+..+|+ ++.++.++.+...|..+|+.+........ .+.
T Consensus 71 v~~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 71 VYVGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred EEEecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 333467777777777777643211111 1111222223333776 77788899999999889999887765551 111
Q ss_pred EEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCC---CceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCc
Q 001386 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1088)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1088)
.-.+ ..+ ..+..++.+|.+...|..++.......... ..+..-....++. ++.+..+ - +..+.-.|..+|.
T Consensus 147 ~~~v--~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~~~-~-~~~~~a~~~~~G~ 220 (370)
T COG1520 147 SPPV--VGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGSDG-Y-DGILYALNAEDGT 220 (370)
T ss_pred cCcE--EcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEecCC-C-cceEEEEEccCCc
Confidence 1111 112 244444467888888877777766544332 1111111122332 3333221 1 3357777777787
Q ss_pred eeEEEecccccc-ccEEEEEEeC-----CCCEEEEEeCCCcEEEEEcCCCeeeEEEeCC
Q 001386 567 IKRTYQGLQLQH-NSVSVVHFDT-----AKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1088)
Q Consensus 567 ~~~~~~~~~~~~-~~v~~~~~~~-----~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1088)
..-......... ..+....... .+..++.++.++.+...|..+|+.+......
T Consensus 221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 221 LKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred EeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 765543222000 0010000000 1223456777888999999999999888754
No 460
>PHA02790 Kelch-like protein; Provisional
Probab=89.96 E-value=14 Score=42.81 Aligned_cols=148 Identities=9% Similarity=-0.018 Sum_probs=72.3
Q ss_pred CceEEEEEecCC--eEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccc
Q 001386 498 NIHFIFSISVDG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1088)
Q Consensus 498 ~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1088)
++...+.|+.++ .+..||..+.+-......+.......+..-+|+..+.||.++. ...+..||+.+.+-...-.-..
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~-~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET-DTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC-CccEEEEeCCCCEEEeCCCCCC
Confidence 556777777543 5777876543222111111111112223346666666665332 3557789988765443211111
Q ss_pred cccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCC-----CcEEEEe
Q 001386 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----NRIKILE 650 (1088)
Q Consensus 576 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd 650 (1088)
.......+ .-++...+.| |.+.+||..+++....-..... ....-+.--++++.++|+.+ ..+..||
T Consensus 397 -~r~~~~~~--~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~--r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd 468 (480)
T PHA02790 397 -PHYKSCAL--VFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYP--RDNPELIIVDNKLLLIGGFYRGSYIDTIEVYN 468 (480)
T ss_pred -ccccceEE--EECCEEEEEC---CceEEecCCCCcEeEcCCCCCC--ccccEEEEECCEEEEECCcCCCcccceEEEEE
Confidence 00111112 2344444445 3577899887765543322211 11222223367788888754 3566777
Q ss_pred CCCC
Q 001386 651 TPES 654 (1088)
Q Consensus 651 ~~~~ 654 (1088)
..++
T Consensus 469 ~~~~ 472 (480)
T PHA02790 469 NRTY 472 (480)
T ss_pred CCCC
Confidence 6654
No 461
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=89.95 E-value=0.33 Score=44.48 Aligned_cols=61 Identities=16% Similarity=0.352 Sum_probs=48.0
Q ss_pred hhhHHHHhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhccccccccccccc
Q 001386 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSK 132 (1088)
Q Consensus 72 ~~~~l~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 132 (1088)
++|.++-+.||||+.+|..++|..|+++.-..+.....+..++|+.+....+..+++....
T Consensus 29 lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~ 89 (133)
T cd08044 29 LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKL 89 (133)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHH
Confidence 9999999999999999999999999998655554445567788877777776666654333
No 462
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.89 E-value=4.6 Score=48.85 Aligned_cols=101 Identities=16% Similarity=0.169 Sum_probs=67.1
Q ss_pred CCeeEEEEecCC--CEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee
Q 001386 799 EAVPCFALSKND--AYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 876 (1088)
Q Consensus 799 ~~v~~~~~s~dg--~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~ 876 (1088)
....++.|.|.- ..++.-.|+.|++..+.-......--......+|++|+| .|+.+++|...|++.-|... ++...
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik~ 233 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIKS 233 (1405)
T ss_pred cccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEecc-ccceeeEecCCCeEEEeecc-cceee
Confidence 345566777643 233344588888887654332222222446789999999 89999999999999988754 44333
Q ss_pred eecc----ccCCeeEEEECCCCCEEEEEe
Q 001386 877 KLEG----HSKRVTGLVFSDALNILVSSG 901 (1088)
Q Consensus 877 ~l~~----h~~~V~~l~~s~dg~~las~s 901 (1088)
.+.+ ....|.+|+|-....+|++-+
T Consensus 234 ~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 234 EIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred cccCCCcCCCcceeEEEEecceeEEEEec
Confidence 3322 247899999987777777543
No 463
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.78 E-value=17 Score=39.54 Aligned_cols=163 Identities=13% Similarity=0.111 Sum_probs=90.7
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCe------EEEEEcCC--c--ee-----eeeeccccC--------CeeEEEECCCCC
Q 001386 839 SPTATSLAFNPHDNNVIAIGMDDST------ILIYNARS--S--EV-----ISKLEGHSK--------RVTGLVFSDALN 895 (1088)
Q Consensus 839 ~~~i~~l~~sp~d~~~lasg~~dg~------i~lwd~~~--~--~~-----~~~l~~h~~--------~V~~l~~s~dg~ 895 (1088)
-+.+..+.+.+.++. +++.+++|. ++.+++.. + .. ...+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~-~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGR-FYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCE-EEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 356788889863454 444566666 66665543 1 11 111222222 344788888888
Q ss_pred EEEEEeCC------CcEEEEEcCCCceeeeeeeecCC---------CCccCCCCeEEEEEcCCCCEEEEE------eCC-
Q 001386 896 ILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPD---------GVMTLAPSETHIQFHKDQTRFLLV------HET- 953 (1088)
Q Consensus 896 ~las~s~D------g~i~iwd~~~~~~~~~~~~~~~~---------~~~~~~~~v~~~~fs~dg~~l~~~------~d~- 953 (1088)
++++.=.+ ..|+.++.+ |...... ..+. ........+.+++++|||+.|.+. .|+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~--~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~ 174 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRF--PVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP 174 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceE--ccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc
Confidence 88876666 667777766 3322111 1111 112233578999999999955542 232
Q ss_pred -e-------EE--EEEcCc-ceeeeeee---cC-----CCcCEEEEEEeeCCCEEEEEe-----CCCcEEEEEcCC
Q 001386 954 -H-------LA--IYEAEE-LTCLKQWF---PI-----SSVPISQATFSCDCRMVFTSF-----VDGTLSIHEASN 1005 (1088)
Q Consensus 954 -~-------i~--vwd~~~-~~~~~~~~---~~-----h~~~v~~l~fs~dg~~l~s~s-----~dg~v~vwd~~~ 1005 (1088)
. ++ .||..+ +.....+. .. ....++.+.+-+|+++|+.-= ....++|+.+..
T Consensus 175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l 250 (326)
T PF13449_consen 175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDL 250 (326)
T ss_pred ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEEc
Confidence 1 44 455554 32333321 11 357889999999999776432 234566665443
No 464
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=89.65 E-value=62 Score=40.09 Aligned_cols=168 Identities=13% Similarity=0.142 Sum_probs=104.6
Q ss_pred CCCCCeEEEEEc---CC---CCcEEEEEeCCCeEEEEE------cCC---------ceeeeeeccc---cCCeeEEEECC
Q 001386 837 PPSPTATSLAFN---PH---DNNVIAIGMDDSTILIYN------ARS---------SEVISKLEGH---SKRVTGLVFSD 892 (1088)
Q Consensus 837 ~~~~~i~~l~~s---p~---d~~~lasg~~dg~i~lwd------~~~---------~~~~~~l~~h---~~~V~~l~~s~ 892 (1088)
....+|..++|+ .. ..++|++ -....+.|+. +.. ..++..+..+ ..+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 355688888888 21 2245554 4455677776 111 1233444322 23567899998
Q ss_pred -CCCEEEEEeCCCcEEEEEcCCCceeeeeeee---cCCCCc-cC---CCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcce
Q 001386 893 -ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQ---TPDGVM-TL---APSETHIQFHKDQTRFLLVHETHLAIYEAEELT 964 (1088)
Q Consensus 893 -dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~---~~~~~~-~~---~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~ 964 (1088)
+.+.||.....|...||++..........+. ...|.. .. ...-..+.|.++-+.|+++....+.++|+.+..
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~ 235 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESNW 235 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCCCC
Confidence 4468999999999999999332222111111 112221 10 123457889999999999999999999999887
Q ss_pred eee-eeecCCCcCEEEEEEeeCC-CEEEEEeCCCcEEEEEcCCC
Q 001386 965 CLK-QWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNL 1006 (1088)
Q Consensus 965 ~~~-~~~~~h~~~v~~l~fs~dg-~~l~s~s~dg~v~vwd~~~~ 1006 (1088)
... .........|..+.-+++. .+++.- +...|...++.+.
T Consensus 236 ~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~~ 278 (765)
T PF10214_consen 236 QTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKSS 278 (765)
T ss_pred ccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccCC
Confidence 644 2233346789999988873 333333 3456877788774
No 465
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=89.45 E-value=17 Score=37.14 Aligned_cols=146 Identities=11% Similarity=0.054 Sum_probs=79.5
Q ss_pred EEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC---CceeEEEeccccccccEEEEEEeCC
Q 001386 513 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE---GAIKRTYQGLQLQHNSVSVVHFDTA 589 (1088)
Q Consensus 513 iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~ 589 (1088)
+||+.+.+...........+.+-++-+||+++.+++. .++...+++++..+ ..........-.....-..+..-+|
T Consensus 50 ~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D 128 (243)
T PF07250_consen 50 EYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD 128 (243)
T ss_pred EEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence 5676665544333333334455567789998888774 34666788888654 1111111110111223344556689
Q ss_pred CCEEEEEeCCC-cEEEEEcCC-CeeeEEE---e---CCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccc
Q 001386 590 KDQILAAGDDH-VIKIWDMNK-VQLLTTI---D---AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 661 (1088)
Q Consensus 590 ~~~l~~~s~dg-~i~iwd~~~-~~~~~~~---~---~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 661 (1088)
|+.++.|+... +..+|.... ......+ . ......--..+...|+|++++.+..+ -.|||..+++.+..+.
T Consensus 129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTLP 206 (243)
T ss_pred CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeCC
Confidence 99999987664 345555422 1111111 1 01111122467788999999988765 4556877775544444
No 466
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.36 E-value=8 Score=47.94 Aligned_cols=172 Identities=14% Similarity=0.187 Sum_probs=101.1
Q ss_pred ccCCCchhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCC
Q 001386 318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1088)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~ 397 (1088)
....+|+.++..+. |...=..+-+-|.=.+ |--+.|+.+.+|+.+++..... +.+-..
T Consensus 63 ~v~~IP~el~eq~~-~~~~~~~mGiFpeI~R--aWiTiDn~L~lWny~~~~e~~~-------------------~d~~sh 120 (1311)
T KOG1900|consen 63 QVVNIPDELLEQFS-NIECKTDMGIFPEIGR--AWITIDNNLFLWNYESDNELAE-------------------YDGLSH 120 (1311)
T ss_pred ccccCCHHHHHHhc-Ccceeeeeccchhhcc--eEEEeCCeEEEEEcCCCCcccc-------------------ccchhh
Confidence 55778888877776 4434444555554443 3335679999999999665542 233334
Q ss_pred CeEEEE--------ECCCCCEEEEEeCCCEEEEEEccCCCcccce------eEeccCCCCEEEEEecCCCCcEEEEEEeC
Q 001386 398 SVNRVV--------WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ------LEIDAHVGNVNDLAFSAPCKQISVITCGD 463 (1088)
Q Consensus 398 ~V~~l~--------~s~dg~~las~~~dg~i~vwd~~~~~~~~~~------~~~~~h~~~v~~~~~s~d~~~l~l~s~s~ 463 (1088)
.|..+. |-|.=++|.+...--.|.++-+.-.+.-... ..+.-....|+++....+|+ ++. +|.
T Consensus 121 tIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~-~G~ 197 (1311)
T KOG1900|consen 121 TILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFF-AGR 197 (1311)
T ss_pred hheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEE-eec
Confidence 444443 3333455555555555777765433221111 12222345789999888998 444 556
Q ss_pred CCcEEEEeC----CCC---c-e----------------eEEec-cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCC
Q 001386 464 DKTIKVWDA----VTG---S-R----------------TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518 (1088)
Q Consensus 464 d~~i~vwd~----~~~---~-~----------------~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 518 (1088)
|| .+|.+ ..| + | +-.+. .+..+|..+.+. .....+.+-+..|+|.+||+..
T Consensus 198 dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID--~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 198 DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID--NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec--cccceeeeeccCceEEEEEccC
Confidence 66 44432 111 1 1 11122 456789988884 3446888899999999999875
No 467
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.30 E-value=1.1 Score=30.51 Aligned_cols=33 Identities=12% Similarity=0.232 Sum_probs=23.4
Q ss_pred cccCCCCceeeeecCCCCeEEEEEccc--CcEEEE
Q 001386 330 LIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLW 362 (1088)
Q Consensus 330 l~~h~~~V~~v~~spdg~~lla~g~~d--g~i~iw 362 (1088)
+......-...+|||||++++.++..+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344455778899999999888887777 666665
No 468
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.29 E-value=23 Score=34.95 Aligned_cols=146 Identities=12% Similarity=0.164 Sum_probs=87.0
Q ss_pred cEEEEEeCCCeEEEEEcCC--ceeeeeeccccCCeeEEEECCCCCEEEEEeCCC------cEEE---EEcCCCceeeeee
Q 001386 853 NVIAIGMDDSTILIYNARS--SEVISKLEGHSKRVTGLVFSDALNILVSSGGDA------QIFV---WDVDGWGIQTCRS 921 (1088)
Q Consensus 853 ~~lasg~~dg~i~lwd~~~--~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg------~i~i---wd~~~~~~~~~~~ 921 (1088)
..|..+...+.|.+|++.. .+.+.+|..- +.|..+.++..|.+|+|-=.+. .+|+ |+....+.... .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v-~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV-R 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE-E
Confidence 4555556778899999983 4566677644 7899999999999999874322 4555 44331111000 0
Q ss_pred eecCCCC------------------ccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCccee-ee-----ee---ecCC-
Q 001386 922 LQTPDGV------------------MTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC-LK-----QW---FPIS- 973 (1088)
Q Consensus 922 ~~~~~~~------------------~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~-~~-----~~---~~~h- 973 (1088)
.... || .+....+.+++.-|-..-|++|.++++.+|.+..... .. .+ ...|
T Consensus 107 vRia-G~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 107 VRIA-GHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred EEEc-ccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 0000 10 0111356788888887788888899999998775544 11 00 1112
Q ss_pred -CcCEEEEEEeeCCCEEEEEeCCCcEEEEEcC
Q 001386 974 -SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1004 (1088)
Q Consensus 974 -~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~ 1004 (1088)
+-.+..++|. +.|+|..+ +-.++|..+.
T Consensus 186 ~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 186 DNFKPTQVAIC--EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred cCceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence 3335566665 45888665 5567776653
No 469
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.68 E-value=48 Score=37.53 Aligned_cols=67 Identities=13% Similarity=0.194 Sum_probs=41.7
Q ss_pred ecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCC
Q 001386 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1088)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg 408 (1088)
++...-+..+.|+|.|||+ +|++--..|.|++++..++....... +.........+....|+|+||-
T Consensus 24 ~va~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~------------l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 24 VLLSGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFT------------LPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EEECCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeec------------CCceeccCCCCceeeEEECCCc
Confidence 3344445889999999997 67665446999999866654221111 0110011136778999999874
No 470
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=88.66 E-value=33 Score=39.60 Aligned_cols=145 Identities=13% Similarity=0.063 Sum_probs=74.9
Q ss_pred CCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec--CCCCccCCCCeEE
Q 001386 860 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT--PDGVMTLAPSETH 937 (1088)
Q Consensus 860 ~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~v~~ 937 (1088)
..+...++|.. |.++..+.........+...++|.+++..+ ..++.+|+.... .....+.. ...|. .
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v-~~~~~l~~~~~~~HH-------D 194 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKV-IWEYDLPGGYYDFHH-------D 194 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--E-EEEEE--TTEE-B-S--------
T ss_pred CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCE-EEeeecCCccccccc-------c
Confidence 44566666644 555555443222222266778998887665 678888887532 22222211 11133 4
Q ss_pred EEEcCCCCEEEEEe--------------CCeEEEEEcCcceeeeeeecC-C-------------------------CcCE
Q 001386 938 IQFHKDQTRFLLVH--------------ETHLAIYEAEELTCLKQWFPI-S-------------------------SVPI 977 (1088)
Q Consensus 938 ~~fs~dg~~l~~~~--------------d~~i~vwd~~~~~~~~~~~~~-h-------------------------~~~v 977 (1088)
+..-|+|++|+.+. +..|..+| .+|+.+..+... | -..+
T Consensus 195 ~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~ 273 (477)
T PF05935_consen 195 IDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHI 273 (477)
T ss_dssp EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--E
T ss_pred cEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCcccc
Confidence 77889999998754 23567777 777777664211 1 1347
Q ss_pred EEEEEee-CCCEEEEEeCCCcEEEEEcCCCceEEEecccc
Q 001386 978 SQATFSC-DCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1016 (1088)
Q Consensus 978 ~~l~fs~-dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 1016 (1088)
.++.+.+ |+..++++-.-..|...|..++++...+....
T Consensus 274 Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 274 NSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp EEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred CccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 8899988 55555555444588889999999988877544
No 471
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=88.64 E-value=30 Score=35.18 Aligned_cols=226 Identities=10% Similarity=0.092 Sum_probs=124.7
Q ss_pred CCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCC
Q 001386 695 KEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEV 774 (1088)
Q Consensus 695 ~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~ 774 (1088)
.+||..-+++...+.+--.|..++ +...+.+. ....-..+...|||..-++-+..+..++
T Consensus 70 apdG~VWft~qg~gaiGhLdP~tG---ev~~ypLg---~Ga~Phgiv~gpdg~~Witd~~~aI~R~-------------- 129 (353)
T COG4257 70 APDGAVWFTAQGTGAIGHLDPATG---EVETYPLG---SGASPHGIVVGPDGSAWITDTGLAIGRL-------------- 129 (353)
T ss_pred CCCCceEEecCccccceecCCCCC---ceEEEecC---CCCCCceEEECCCCCeeEecCcceeEEe--------------
Confidence 455555555555555544444322 22222222 2344456677788776555444332222
Q ss_pred CCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCC----------cEEEEEcCCceeEEEecCCCCCeEE
Q 001386 775 PPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG----------VISLYIVMTFKTILTIMPPSPTATS 844 (1088)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg----------~i~iwd~~~~~~~~~~~~~~~~i~~ 844 (1088)
+.++.. +.++.++............|.+.|.+-+++..| .|++|+... ......
T Consensus 130 -----dpkt~e-vt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq----------G~gpyG 193 (353)
T COG4257 130 -----DPKTLE-VTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ----------GGGPYG 193 (353)
T ss_pred -----cCcccc-eEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC----------CCCCcc
Confidence 222222 344445444456677889999999999988643 344444332 234567
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEcCCce--eeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeee
Q 001386 845 LAFNPHDNNVIAIGMDDSTILIYNARSSE--VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL 922 (1088)
Q Consensus 845 l~~sp~d~~~lasg~~dg~i~lwd~~~~~--~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~ 922 (1088)
++..| ||..-++.-.+..|-..|..++. .+-.-.+....-..+--+|.|+.-+|....+.+.-+|-.... ....
T Consensus 194 i~atp-dGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s---W~ey 269 (353)
T COG4257 194 ICATP-DGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS---WIEY 269 (353)
T ss_pred eEECC-CCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc---ceee
Confidence 88889 78777777777778777777662 222222212234455667888888887777777777766533 2222
Q ss_pred ecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcce
Q 001386 923 QTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELT 964 (1088)
Q Consensus 923 ~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~ 964 (1088)
..+.... .-.++.....++.-+. ...+.|.-+|-.+.+
T Consensus 270 pLPgs~a----rpys~rVD~~grVW~sea~agai~rfdpeta~ 308 (353)
T COG4257 270 PLPGSKA----RPYSMRVDRHGRVWLSEADAGAIGRFDPETAR 308 (353)
T ss_pred eCCCCCC----CcceeeeccCCcEEeeccccCceeecCcccce
Confidence 2222211 2446666666665554 344556556655433
No 472
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.56 E-value=41 Score=36.62 Aligned_cols=151 Identities=11% Similarity=0.110 Sum_probs=86.5
Q ss_pred CCCCeeEEEEec-CCCEEEEEeCCc------EEEEEcCC--c--eeE-----EEecCCCC--------CeEEEEEcCCCC
Q 001386 797 SQEAVPCFALSK-NDAYLFSASGGV------ISLYIVMT--F--KTI-----LTIMPPSP--------TATSLAFNPHDN 852 (1088)
Q Consensus 797 ~~~~v~~~~~s~-dg~~l~~~~dg~------i~iwd~~~--~--~~~-----~~~~~~~~--------~i~~l~~sp~d~ 852 (1088)
.-.....+.+.+ ++.++++.++|. +..+++.. + ..+ ..+....+ ..-++++.+ ++
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g 96 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DG 96 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CC
Confidence 345677889984 566666665555 55444432 1 111 11222221 334788866 78
Q ss_pred cEEEEEeCC------CeEEEEEcCCceeeeeec---------------cccCCeeEEEECCCCCEEEEEeC-----CC--
Q 001386 853 NVIAIGMDD------STILIYNARSSEVISKLE---------------GHSKRVTGLVFSDALNILVSSGG-----DA-- 904 (1088)
Q Consensus 853 ~~lasg~~d------g~i~lwd~~~~~~~~~l~---------------~h~~~V~~l~~s~dg~~las~s~-----Dg-- 904 (1088)
.++++.-.+ ..|+.++.. |+.+..+. ..+....+|+++|||+.|.++.+ |+
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 888877666 788888876 65544331 13456889999999997666543 22
Q ss_pred c-------EEEEEcCCCc---eeeeeeeecCC-CCccCCCCeEEEEEcCCCCEEEE
Q 001386 905 Q-------IFVWDVDGWG---IQTCRSLQTPD-GVMTLAPSETHIQFHKDQTRFLL 949 (1088)
Q Consensus 905 ~-------i~iwd~~~~~---~~~~~~~~~~~-~~~~~~~~v~~~~fs~dg~~l~~ 949 (1088)
. ++|+..+... ......+.... ........++.+.+-+|+++|+.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 1 5565555321 11222222221 00001236899999999998888
No 473
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=88.47 E-value=23 Score=39.07 Aligned_cols=152 Identities=9% Similarity=0.066 Sum_probs=92.4
Q ss_pred EEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeC------CceEEEEEecCCeEEEEECC
Q 001386 444 VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE------NIHFIFSISVDGKIKAWLYD 517 (1088)
Q Consensus 444 v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~l~s~~~dg~i~iwd~~ 517 (1088)
+.-+....+...+++..|+....++-.|++.|+.+..+..|...+. .+.|.. +.+.| .|-.+..|.-.|.+
T Consensus 469 p~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvvV--qy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR 545 (776)
T COG5167 469 PEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVVV--QYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPR 545 (776)
T ss_pred hhhceeecCCcceEEecCCCcccceeeecccceeeeEeecCCccee--ecCCchhHHhcCccceE-EeecccceEEeccc
Confidence 3334444444555677788888899999999999999987776643 333321 12234 44555555555665
Q ss_pred CCCceEEecCCCC-----ceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCE
Q 001386 518 SLGARVDYDAPGL-----GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 592 (1088)
Q Consensus 518 ~~~~~~~~~~~~~-----~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 592 (1088)
............. ...+.. ....-++++++..++ |++||.-.-+....+++.. ..|..+..+.+|++
T Consensus 546 ~~gNKi~v~esKdY~tKn~Fss~~-tTesGyIa~as~kGD----irLyDRig~rAKtalP~lG---~aIk~idvta~Gk~ 617 (776)
T COG5167 546 ARGNKIKVVESKDYKTKNKFSSGM-TTESGYIAAASRKGD----IRLYDRIGKRAKTALPGLG---DAIKHIDVTANGKH 617 (776)
T ss_pred ccCCceeeeeehhccccccccccc-cccCceEEEecCCCc----eeeehhhcchhhhcCcccc---cceeeeEeecCCcE
Confidence 5443222221111 222222 234457888776444 9999976555555566655 78999999999999
Q ss_pred EEEEeCCCcEEEEEc
Q 001386 593 ILAAGDDHVIKIWDM 607 (1088)
Q Consensus 593 l~~~s~dg~i~iwd~ 607 (1088)
+++.+.. .+.+-|+
T Consensus 618 ilaTCk~-yllL~d~ 631 (776)
T COG5167 618 ILATCKN-YLLLTDV 631 (776)
T ss_pred EEEeecc-eEEEEec
Confidence 9887753 4555554
No 474
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.46 E-value=22 Score=42.10 Aligned_cols=111 Identities=14% Similarity=0.285 Sum_probs=71.6
Q ss_pred CeeEEEEec--CCCEEEEEe-CCcEEEEEcCC-------c----e---------eEEEecCCCCCeEEEEEc--CCCCcE
Q 001386 800 AVPCFALSK--NDAYLFSAS-GGVISLYIVMT-------F----K---------TILTIMPPSPTATSLAFN--PHDNNV 854 (1088)
Q Consensus 800 ~v~~~~~s~--dg~~l~~~~-dg~i~iwd~~~-------~----~---------~~~~~~~~~~~i~~l~~s--p~d~~~ 854 (1088)
.|+-+.+.. +...|+.+. ||.|.+|.+++ . + +...+. -...+.+++++ . ..++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceE
Confidence 455554443 445566665 89999997632 1 0 001111 23467889998 6 6789
Q ss_pred EEEEeCCCeEEEEEcCCc--ee-eeeeccccCCeeEEEECCCC---C---EEEEEeCCCcEEEEEcC
Q 001386 855 IAIGMDDSTILIYNARSS--EV-ISKLEGHSKRVTGLVFSDAL---N---ILVSSGGDAQIFVWDVD 912 (1088)
Q Consensus 855 lasg~~dg~i~lwd~~~~--~~-~~~l~~h~~~V~~l~~s~dg---~---~las~s~Dg~i~iwd~~ 912 (1088)
||+++....|.||-+... +. ...-..|...|-+|+|-++. . +|++++-.|.+.+|++.
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 999998888888866542 11 11111266779999997643 2 78889999999998883
No 475
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.39 E-value=26 Score=42.76 Aligned_cols=250 Identities=10% Similarity=0.034 Sum_probs=116.6
Q ss_pred EEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCC
Q 001386 740 LTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG 819 (1088)
Q Consensus 740 ~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg 819 (1088)
.++..-|..+..|+.+|.+.+|.+........... +.... ..... -+..+|..+...+.-..+.+-+|+
T Consensus 20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~------~~~~~-~~~~~----~~kk~i~~l~~~~~~~~ll~l~ds 88 (877)
T KOG2063|consen 20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVEL------VTETV-KFEKE----FSKKPINKLLVCASLELLLILSDS 88 (877)
T ss_pred hHHHHhCCEEEEEcCCCcEEEEeccccccccchhh------hcchh-HHhhh----hccchhHHHhhcchhcchheecCC
Confidence 34455678899999999999999876544221111 00000 00001 135677777777777788888899
Q ss_pred cEEEEEcCCceeEEEecCCCCCeEEEEEc--CC-CC--cEEEEEeCC-C-eEEEEEcCCceeeeeeccccCCeeEEEECC
Q 001386 820 VISLYIVMTFKTILTIMPPSPTATSLAFN--PH-DN--NVIAIGMDD-S-TILIYNARSSEVISKLEGHSKRVTGLVFSD 892 (1088)
Q Consensus 820 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s--p~-d~--~~lasg~~d-g-~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~ 892 (1088)
.|.++++.+.+..... .+-..+...+.. +- .+ .+.++.+.- . ....|+-+.+-.+..--+-.....+++|
T Consensus 89 qi~~~~l~~~~~~~~~-~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-- 165 (877)
T KOG2063|consen 89 QIAVHKLPELEPVPSG-TRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARAW-- 165 (877)
T ss_pred cceeeecCcccccccc-cccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhcc--
Confidence 9999988776652111 111111111110 00 11 122222211 1 2223333333222211111111222222
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCccee-eeeeec
Q 001386 893 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC-LKQWFP 971 (1088)
Q Consensus 893 dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~-~~~~~~ 971 (1088)
.|..+.++-.+....+|.-.++........... .. ..-..+.--+++..++.+.|+...+-|.. |.. .+....
T Consensus 166 ~~~~~c~~~~~~~~ii~~~~~~~~~~~~~s~~~-~~----s~~P~I~~l~~~~~ll~~kd~~gv~vd~~-G~~~~~~~l~ 239 (877)
T KOG2063|consen 166 CGHIVCLGLKKSYYIINNTSKGVGPNLFPSSMD-NE----SRKPLIKSLSDQSELLLGKDNIGVVVDLN-GIIAQRGTLV 239 (877)
T ss_pred cceeEEEeecceeEEEecCCCccccceeeeccc-cc----cCCCeEEEecCCceEEEccCceEEEEecC-CcccCCCceE
Confidence 344444443333334444443321111111110 00 01224555567777888888877777744 333 211110
Q ss_pred CCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001386 972 ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 972 ~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1013 (1088)
- .....++.. +.-|+++- .++.|.||+..++.++.++.
T Consensus 240 w-s~~P~~v~~--~~PYlIa~-~~~~veI~s~~~~qlvQSI~ 277 (877)
T KOG2063|consen 240 W-SEVPLSVVV--ESPYLIAL-LDRSVEIRSKLDGQLVQSIT 277 (877)
T ss_pred e-cccchhhcc--cCceEEEE-ccccEEEEeccCHHHhhccc
Confidence 0 111112221 34466654 46699999999998887774
No 476
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=88.37 E-value=0.48 Score=43.95 Aligned_cols=57 Identities=14% Similarity=0.327 Sum_probs=41.3
Q ss_pred hhhHHHHhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhccccccccc
Q 001386 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHE 128 (1088)
Q Consensus 72 ~~~~l~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~ 128 (1088)
++|.++-+.||+|+..|..++|..|+.+.-..+.....+..++|..+....+..+++
T Consensus 40 lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~ 96 (142)
T PF04494_consen 40 LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENE 96 (142)
T ss_dssp GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccH
Confidence 899999999999999999999999999966555444455567776655555444333
No 477
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=88.22 E-value=48 Score=37.00 Aligned_cols=150 Identities=9% Similarity=0.006 Sum_probs=82.7
Q ss_pred eeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcce
Q 001386 885 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELT 964 (1088)
Q Consensus 885 V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~ 964 (1088)
...+..++||.+++.+..-..++-||-... ....+..... ..++.+.|.+++..++++..|.+.. ....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~---~W~~~~~~~~-----~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~ 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQP---YWQPHNRASA-----RRIQNMGWRADGGLWLLTRGGGLYV-SKGTGL 311 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCc---ceEEecCCCc-----cceeeeeEcCCCCEEEEeCCceEEE-ecCCCC
Confidence 445667888887776554333333443321 0111222211 2578999999999999987777543 344443
Q ss_pred e-----eeeeecC-CCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCC
Q 001386 965 C-----LKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1038 (1088)
Q Consensus 965 ~-----~~~~~~~-h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d 1038 (1088)
. ....... ....+..+.|.+|+..+++ +..|.+... .+.|+.-.........+. .+| .+.|.+ +
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s-~D~G~tW~~~~~~~~~~~-----~ly--~v~f~~-~ 381 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRS-TDGGKSWKRDKGADNIAA-----NLY--SVKFFD-D 381 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEe-CCCCcceeEccccCCCCc-----cee--EEEEcC-C
Confidence 1 2211111 1345889999988776665 467766655 355554333221111111 133 577765 3
Q ss_pred CCEEEEEeCCCcEEEE
Q 001386 1039 PTQFAVGLTNGEVYVI 1054 (1088)
Q Consensus 1039 ~~~l~~~~~dg~v~~w 1054 (1088)
+...+.+.+|.|.-|
T Consensus 382 -~~g~~~G~~G~il~~ 396 (398)
T PLN00033 382 -KKGFVLGNDGVLLRY 396 (398)
T ss_pred -CceEEEeCCcEEEEe
Confidence 456667788888765
No 478
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=87.97 E-value=45 Score=36.34 Aligned_cols=112 Identities=9% Similarity=-0.021 Sum_probs=54.4
Q ss_pred CCCEEEEEeCCC-----cEEEEEcCCCcee-eeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEe------CCeEEEEEc
Q 001386 893 ALNILVSSGGDA-----QIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH------ETHLAIYEA 960 (1088)
Q Consensus 893 dg~~las~s~Dg-----~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~------d~~i~vwd~ 960 (1088)
++.+++.|+.++ .+..+|+.+.+.. ....+...... .-...+..-+++..+.+. ...+..||.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~-----~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~ 146 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFT-----FENGSACYKDGTLYVGGGNRNGKPSNKSYLFNL 146 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcC-----ccCceEEEECCEEEEEeCcCCCccCceEEEEcC
Confidence 566777777543 4666777664421 01111111110 011122233566666642 135888898
Q ss_pred CcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCc----EEEEEcCCCceE
Q 001386 961 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT----LSIHEASNLEVQ 1009 (1088)
Q Consensus 961 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~----v~vwd~~~~~~~ 1009 (1088)
.+.+-...............+...+++..+.|+.++. +.+||..+....
T Consensus 147 ~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 147 ETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 7654222110011122233344557777788876642 467888877643
No 479
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=87.83 E-value=2.9 Score=40.53 Aligned_cols=31 Identities=39% Similarity=0.606 Sum_probs=25.7
Q ss_pred CCeEEEEECCCC------CEEEEEeCCCEEEEEEccC
Q 001386 397 VSVNRVVWSPDG------SLLGVAYSKHIVQLYAYHG 427 (1088)
Q Consensus 397 ~~V~~l~~s~dg------~~las~~~dg~i~vwd~~~ 427 (1088)
..|.+++|||-| -+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 389999999954 4788889999999998764
No 480
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.75 E-value=2.2 Score=42.98 Aligned_cols=73 Identities=10% Similarity=0.121 Sum_probs=51.4
Q ss_pred ECCCCCEEEEEeCCCcEEEEEcCCCceeeee-e-eecCCCCc----cCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCc
Q 001386 890 FSDALNILVSSGGDAQIFVWDVDGWGIQTCR-S-LQTPDGVM----TLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 962 (1088)
Q Consensus 890 ~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~-~-~~~~~~~~----~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~ 962 (1088)
+..++.+|+..+.+|.+++||+.+.+..... . ........ .....|..+.++.+|.-+++-.+|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence 4457889999999999999999997643322 1 11111100 122468999999999999887778889998663
No 481
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=87.71 E-value=13 Score=42.72 Aligned_cols=78 Identities=15% Similarity=0.266 Sum_probs=52.5
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001386 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~ 474 (1088)
...-++++.-+|.|.-++.+..||+|++|+......-+ +-....+-..+.|...| ++++..|..+.-|. +.
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk----i~~~~~p~~nlv~tnhg----l~~~tsdrr~la~~-~d 83 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK----ICEEAKPKENLVFTNHG----LVTATSDRRALAWK-ED 83 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhh----hhhhcCCccceeeeccc----eEEEeccchhheee-cc
Confidence 34567888888999999999999999999987654322 11223344556676554 56667787777786 45
Q ss_pred CceeEEe
Q 001386 475 GSRTYSF 481 (1088)
Q Consensus 475 ~~~~~~~ 481 (1088)
|-..+.|
T Consensus 84 gvvqqqf 90 (1636)
T KOG3616|consen 84 GVVQQQF 90 (1636)
T ss_pred Ccchhhc
Confidence 5433333
No 482
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.70 E-value=15 Score=46.29 Aligned_cols=68 Identities=10% Similarity=0.166 Sum_probs=43.3
Q ss_pred eEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCce
Q 001386 935 ETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1008 (1088)
Q Consensus 935 v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~ 1008 (1088)
+.+..+......+.....+.+-+|+.........+...+... +.++..++++..||.+.+||...|..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 201 SLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQLE------SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cceeeeecCCCcceeeeeeeeeehhcccccchhhcccccccC------ccCCceEEEEEecCCEEeeecCCCce
Confidence 344444444455554555556666655444333333222111 88999999999999999999999866
No 483
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=87.64 E-value=87 Score=39.32 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=17.0
Q ss_pred ccccEEEEEEecCCceEEEeccc
Q 001386 733 KANKISRLTYNNGGQAIFALASN 755 (1088)
Q Consensus 733 ~~~~i~~~~~s~~g~~l~~~~~d 755 (1088)
+-..+.+++.+|||...++-..+
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN 682 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGN 682 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCc
Confidence 45677899999999976654444
No 484
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=87.55 E-value=61 Score=37.46 Aligned_cols=192 Identities=12% Similarity=0.145 Sum_probs=90.2
Q ss_pred EEEEE---eCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCc--
Q 001386 457 SVITC---GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG-- 531 (1088)
Q Consensus 457 ~l~s~---s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-- 531 (1088)
++++. .......+.| ..|.....+......... +...++|.+++... +.+..+|+. ++...........
T Consensus 117 ~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~--~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~ 190 (477)
T PF05935_consen 117 YFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNS--FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYD 190 (477)
T ss_dssp EEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SS--EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-
T ss_pred EEEeCCCCCCCceEEEEC-CCccEEEEEccCccccce--eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccc
Confidence 45555 2344566666 555555444322111111 33356776666544 778888775 3333333333321
Q ss_pred -eEEEEEccCCCEEEEEee---------CCCCceeEEEEeCCCCceeEEEecccc------------------------c
Q 001386 532 -CTRMAYSANGRRLFSCGT---------SKEGESFLVEWNESEGAIKRTYQGLQL------------------------Q 577 (1088)
Q Consensus 532 -v~~~~~s~~g~~l~~~~~---------~~~~~~~i~iwd~~~~~~~~~~~~~~~------------------------~ 577 (1088)
=..+..-|+|++|+.+.. ...-+..|..+| .+|+.+..+..... .
T Consensus 191 ~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~D 269 (477)
T PF05935_consen 191 FHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRD 269 (477)
T ss_dssp B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSB
T ss_pred cccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCC
Confidence 234667799999988772 111233466777 77777766432110 0
Q ss_pred cccEEEEEEeCCCCEEEEEeC-CCcEEEEEcCCCeeeEEEeCCCCCCCC-ceEEEec------------------CCCEE
Q 001386 578 HNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPEN-PRICFNK------------------NGTLL 637 (1088)
Q Consensus 578 ~~~v~~~~~~~~~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v-~~v~~s~------------------~~~~l 637 (1088)
--.++++.+.+....|+..+. -..|...|..+++....+..+.....- ....+.| -|++-
T Consensus 270 W~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH~ 349 (477)
T PF05935_consen 270 WLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQHT 349 (477)
T ss_dssp S--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-EE
T ss_pred ccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCcccccccc
Confidence 124788999995555555555 448888998899988888665332211 1111111 24555
Q ss_pred EEEeCCC---cEEEEeCCCCC
Q 001386 638 AVIANEN---RIKILETPESN 655 (1088)
Q Consensus 638 ~~~~~dg---~i~iwd~~~~~ 655 (1088)
+.-..+| .|.++|-...+
T Consensus 350 ~~~~~~g~~~~l~vFDNg~~r 370 (477)
T PF05935_consen 350 AHLIPDGPQGNLLVFDNGNGR 370 (477)
T ss_dssp EEE-TTS---SEEEEE--TTG
T ss_pred eEEcCCCCeEEEEEEECCCCC
Confidence 6666667 78888876554
No 485
>PRK13613 lipoprotein LpqB; Provisional
Probab=87.39 E-value=41 Score=39.74 Aligned_cols=189 Identities=10% Similarity=0.005 Sum_probs=100.6
Q ss_pred CeeEEEEecCCCEEEEEe-CC-cEEEEEcCCcee----EEEecCCCCCeEEEEEcCCCCcEEEEEeC--CC--eEEEEEc
Q 001386 800 AVPCFALSKNDAYLFSAS-GG-VISLYIVMTFKT----ILTIMPPSPTATSLAFNPHDNNVIAIGMD--DS--TILIYNA 869 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~-dg-~i~iwd~~~~~~----~~~~~~~~~~i~~l~~sp~d~~~lasg~~--dg--~i~lwd~ 869 (1088)
.+.++++|+++..+|... ++ .+.+..+..+.. ..... .....+.-.|.+ ++ .+-+... ++ .+++..-
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~-~~~~Lt~PS~d~-~g-~vWtvd~~~~~~~vl~v~~~ 440 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVT-ADGRLTSPSWDG-RG-DLWVVDRDPADPRLLWLLQG 440 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceee-ccCcccCCcCcC-CC-CEEEecCCCCCceEEEEEcC
Confidence 677899999999888776 33 466655533332 11111 123456667777 44 3333322 22 2555543
Q ss_pred CCceee--eeeccccC-CeeEEEECCCCCEEEEEeC---CCcEEEEEcCCCcee---eeeeeecCCCCccCCCCeEEEEE
Q 001386 870 RSSEVI--SKLEGHSK-RVTGLVFSDALNILVSSGG---DAQIFVWDVDGWGIQ---TCRSLQTPDGVMTLAPSETHIQF 940 (1088)
Q Consensus 870 ~~~~~~--~~l~~h~~-~V~~l~~s~dg~~las~s~---Dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~f 940 (1088)
+|+.. .. ....+ .|..+..|+||..+|.... .+.|.|=-+...... .........+ ...+.+++|
T Consensus 441 -~G~~~~V~~-~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~----l~~v~~~~W 514 (599)
T PRK13613 441 -DGEPVEVRT-PELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPE----LEDVTDMSW 514 (599)
T ss_pred -CCcEEEeec-cccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccC----CCccceeEE
Confidence 44432 11 12333 7999999999988776543 355666555432211 1111111111 124889999
Q ss_pred cCCCCEEEEE--eCCeEEEE--EcCcceeeeeeecCCCcCEEEEEEeeCCC-EEEEEeCCCcE
Q 001386 941 HKDQTRFLLV--HETHLAIY--EAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSFVDGTL 998 (1088)
Q Consensus 941 s~dg~~l~~~--~d~~i~vw--d~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~s~s~dg~v 998 (1088)
..++.+++.+ .++...+| ++..... .....+.-..+..++-..+.. .|+.+..++.|
T Consensus 515 ~~~~sL~Vlg~~~~~~~~v~~v~vdG~~~-~~~~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 515 AGDSQLVVLGREEGGVQQARYVQVDGSTP-PASAPAAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred cCCCEEEEEeccCCCCcceEEEecCCcCc-ccccccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 9999988864 23233444 4442222 111122345567777776666 44443555554
No 486
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=87.29 E-value=0.09 Score=56.54 Aligned_cols=144 Identities=18% Similarity=0.178 Sum_probs=95.8
Q ss_pred EEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-
Q 001386 739 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS- 817 (1088)
Q Consensus 739 ~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~- 817 (1088)
...+-+.+..++.++.+..+..||-.. ...... ........+++..+|..+++..
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~ag-------------------q~~le~-----n~tg~aldm~wDkegdvlavlAe 94 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAG-------------------QVILEL-----NPTGKALDMAWDKEGDVLAVLAE 94 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhc-------------------ceeccc-----CCchhHhhhhhccccchhhhhhh
Confidence 445667777788888887777776221 111111 1234455677878887776664
Q ss_pred -CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCE
Q 001386 818 -GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNI 896 (1088)
Q Consensus 818 -dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~ 896 (1088)
.+.+.+||+++......-.+....-.-+.|++ +...++.|...|.+.|++-.+.+.+.....|..+++++++.+.+ +
T Consensus 95 k~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~ 172 (615)
T KOG2247|consen 95 KTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-Y 172 (615)
T ss_pred cCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-e
Confidence 68899999986432221111111112278999 88999999999999999998877766666699999999999886 4
Q ss_pred EEEEeCCCcEEE
Q 001386 897 LVSSGGDAQIFV 908 (1088)
Q Consensus 897 las~s~Dg~i~i 908 (1088)
.+.++.|.++.+
T Consensus 173 vil~dcd~~L~v 184 (615)
T KOG2247|consen 173 VILCDCDNTLSV 184 (615)
T ss_pred eeecCcHHHHHH
Confidence 555666655443
No 487
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=87.05 E-value=56 Score=36.49 Aligned_cols=40 Identities=10% Similarity=0.042 Sum_probs=19.2
Q ss_pred EEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCC
Q 001386 602 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1088)
Q Consensus 602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1088)
+.+||..+.+....-..... .....+..-+++++++|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~--r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQG--LAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCC--ccceEEEEeCCEEEEEcCCC
Confidence 45788777654322211111 11223344456677777653
No 488
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.82 E-value=4.2 Score=41.05 Aligned_cols=73 Identities=10% Similarity=-0.037 Sum_probs=55.3
Q ss_pred EEEcCCCCEEEE-EeCCeEEEEEcCcceeeeee------ec-------CCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 001386 938 IQFHKDQTRFLL-VHETHLAIYEAEELTCLKQW------FP-------ISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1003 (1088)
Q Consensus 938 ~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~------~~-------~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~ 1003 (1088)
+.+..++.+|++ +.+|.+++||+.+++++... .. .....|..+.++.+|.-|++-+ +|..+.|+.
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 345567777776 89999999999999876543 22 3467889999999998887665 688999998
Q ss_pred CCCceEEE
Q 001386 1004 SNLEVQCR 1011 (1088)
Q Consensus 1004 ~~~~~~~~ 1011 (1088)
+-+..+.-
T Consensus 95 ~L~~W~~v 102 (219)
T PF07569_consen 95 DLGCWIRV 102 (219)
T ss_pred ccceeEEe
Confidence 87766543
No 489
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.20 E-value=42 Score=39.33 Aligned_cols=199 Identities=12% Similarity=0.103 Sum_probs=99.5
Q ss_pred CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe----ccCCccEEEE
Q 001386 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF----EGHGAPVYSL 491 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~----~~~~~~v~~~ 491 (1088)
.-..|+|+++.+. .+... +-.|. .+-.+.|+.+.. |+....||++.++++-. +.+... ......|..+
T Consensus 62 a~~~I~If~~sG~-lL~~~--~w~~~-~lI~mgWs~~ee---LI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec 133 (829)
T KOG2280|consen 62 ARPYIRIFNISGQ-LLGRI--LWKHG-ELIGMGWSDDEE---LICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVEC 133 (829)
T ss_pred cceeEEEEecccc-chHHH--HhcCC-CeeeecccCCce---EEEEeccceEEEeecch-hhhcccccccccccCceeEE
Confidence 3345899998753 33321 22343 788999998876 77788999999999643 322221 1122334444
Q ss_pred eeeeeCCceEEEEEecCCeEEEE-ECCCCCceEEecC-CCC--ceEEEEEccCCCE---EEEEeeCCCCceeEEEEeCCC
Q 001386 492 CPHAKENIHFIFSISVDGKIKAW-LYDSLGARVDYDA-PGL--GCTRMAYSANGRR---LFSCGTSKEGESFLVEWNESE 564 (1088)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iw-d~~~~~~~~~~~~-~~~--~v~~~~~s~~g~~---l~~~~~~~~~~~~i~iwd~~~ 564 (1088)
.+.. +| ++.-..+|.+.+- +...... ..... +.. +..|-+..+++.. ++-... .--..+..-+..+
T Consensus 134 ~~f~--~G--Vavlt~~g~v~~i~~~~~~~~-~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~--~v~~~~~q~~~~~ 206 (829)
T KOG2280|consen 134 RFFH--NG--VAVLTVSGQVILINGVEEPKL-RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDV--AVGLHICQVEESR 206 (829)
T ss_pred EEec--Cc--eEEEecCCcEEEEcCCCcchh-hhCCCCCCccCCCcceeEecCCCcceeEEeech--hhhhcccceeccc
Confidence 3322 33 3334444554433 2222111 11111 111 1122222222211 111100 0000011111111
Q ss_pred CceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCC
Q 001386 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1088)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1088)
.+.. .+... ...+..+..+|+.++++--...|.|.+-+.+..+.+..+....+.. -..++|.-+.
T Consensus 207 ~q~~-~~~~~---~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~-p~qm~Wcgnd 271 (829)
T KOG2280|consen 207 VQLH-ALSWP---NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDP-PKQMAWCGND 271 (829)
T ss_pred cccc-ccCCC---CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCc-hHhceeecCC
Confidence 1111 11111 1467888999999999999999999999988888777776443322 2356666544
No 490
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=86.01 E-value=1.2e+02 Score=39.44 Aligned_cols=150 Identities=15% Similarity=0.195 Sum_probs=88.0
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEE
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 411 (1088)
.|-..++.|.-+|+|.+ +=. .|+.++.||..++. |... -..-..+++.++-.-||+..
T Consensus 360 aH~A~LTgv~~~~~ge~-lRl--Hd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lY 417 (1774)
T PF11725_consen 360 AHIAHLTGVHTDPDGEQ-LRL--HDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLY 417 (1774)
T ss_pred HHHHHhhccccCCCCCe-EEe--ecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceE
Confidence 45567788888888885 332 56888888877653 2110 01133456666666677776
Q ss_pred EEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC------ce--eEEecc
Q 001386 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG------SR--TYSFEG 483 (1088)
Q Consensus 412 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~------~~--~~~~~~ 483 (1088)
| .++. .|-|+..+..-. ..-..+.+...+++|+- .+.++.....+.+|++... ++ ...+.+
T Consensus 418 A---k~~~-~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~d 486 (1774)
T PF11725_consen 418 A---KDDD-TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLAD 486 (1774)
T ss_pred e---cCCC-ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccC
Confidence 6 2221 234555543211 12235777888899983 3566665667799987753 11 123333
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCC
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 518 (1088)
......++.+ +++ .|+.+..+|.++.=++..
T Consensus 487 G~a~A~~VgL--s~d--rLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 487 GKAQAQSVGL--SND--RLFVADSEGKLYSADLPA 517 (1774)
T ss_pred Cchhhhheee--cCC--eEEEEeCCCCEEeccccc
Confidence 3335555665 333 688888899888776654
No 491
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=85.92 E-value=60 Score=35.75 Aligned_cols=93 Identities=11% Similarity=0.061 Sum_probs=43.8
Q ss_pred CCCEEEEEe--CCcEEEEEcCC----ceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCC-----------CeEEEEEcCC
Q 001386 809 NDAYLFSAS--GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD-----------STILIYNARS 871 (1088)
Q Consensus 809 dg~~l~~~~--dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d-----------g~i~lwd~~~ 871 (1088)
++++.+.+. ...+..+|+.. +..+..+......-.+++. - ++++.+.|+.+ ..+..||..+
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~-~-~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~ 94 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAA-I-DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKK 94 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEE-E-CCEEEEEeCCCCCCCCCcceecccEEEEECCC
Confidence 555555554 34577777632 2222222211111112222 2 67788888753 2577888876
Q ss_pred ceeeeeeccccCCeeE-EEE-CCCCCEEEEEeCC
Q 001386 872 SEVISKLEGHSKRVTG-LVF-SDALNILVSSGGD 903 (1088)
Q Consensus 872 ~~~~~~l~~h~~~V~~-l~~-s~dg~~las~s~D 903 (1088)
.+-...-......... .+. .-++++.+.|+.+
T Consensus 95 ~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 95 NSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 5422111011111111 112 3477888888764
No 492
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=85.59 E-value=3.1 Score=44.65 Aligned_cols=176 Identities=13% Similarity=0.125 Sum_probs=95.4
Q ss_pred ceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceee-eee-ccccC----Cee-EEEECCCCCEEEEEe
Q 001386 829 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI-SKL-EGHSK----RVT-GLVFSDALNILVSSG 901 (1088)
Q Consensus 829 ~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~-~~l-~~h~~----~V~-~l~~s~dg~~las~s 901 (1088)
++.+..+......+..+-..| |++.+..-+. .++.|+++.+...- .++ ....+ .|+ .+..-..|.-|..++
T Consensus 210 ~e~i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~ 287 (733)
T COG4590 210 QEIIRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVH 287 (733)
T ss_pred hhhhhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEc
Confidence 344445666667888899999 8988887665 68889988764321 111 11111 122 222233566678888
Q ss_pred CCCcEEEE-EcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEE
Q 001386 902 GDAQIFVW-DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQ 979 (1088)
Q Consensus 902 ~Dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~ 979 (1088)
.||.|.-| |+..+.......++...-. ..++..+.=-...+-++. ...|++.++.....+.+-.-. --..+.-
T Consensus 288 ~dG~vsQWFdvr~~~~p~l~h~R~f~l~---pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~--~~~~~~~ 362 (733)
T COG4590 288 EDGLVSQWFDVRRDGQPHLNHIRNFKLA---PAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER--AYQAPQL 362 (733)
T ss_pred CCCceeeeeeeecCCCCcceeeeccccC---cccceeeccccccceEEEEcCCCceeeeecccCcceehhh--hhcCcce
Confidence 99988877 4433221111111111100 011222211112222333 455666666544443332111 1235677
Q ss_pred EEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEe
Q 001386 980 ATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1012 (1088)
Q Consensus 980 l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~ 1012 (1088)
+++||++.+|++- +.|.++++.+++....-++
T Consensus 363 ~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~Peisw 394 (733)
T COG4590 363 VAMSPNQAYLLSE-DQGKIRLAQLENRNPEISW 394 (733)
T ss_pred eeeCcccchheee-cCCceEEEEecCCCCCccH
Confidence 8999999999864 5678999999887654333
No 493
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=85.37 E-value=60 Score=35.29 Aligned_cols=70 Identities=9% Similarity=-0.068 Sum_probs=35.6
Q ss_pred CceEEEEEecC-----CeEEEEECCCCCceEEecCCC-CceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCce
Q 001386 498 NIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1088)
Q Consensus 498 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1088)
++.+.+.|+.. ..+..||+.+.+=...-..+. ......+...+++..+.++.++.....+..||+.+.+-
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 44566666642 357777776544222111111 12222333456667777665432223467889887654
No 494
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=85.08 E-value=64 Score=35.36 Aligned_cols=199 Identities=15% Similarity=0.198 Sum_probs=0.0
Q ss_pred ecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCc--
Q 001386 743 NNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGV-- 820 (1088)
Q Consensus 743 s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~-- 820 (1088)
.|...+++.....+-+.+|+++ |+.+.....-..+.-.-...+.+.-...-|+++++..
T Consensus 65 dp~kSlIigTdK~~GL~VYdL~-------------------Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g 125 (381)
T PF02333_consen 65 DPAKSLIIGTDKKGGLYVYDLD-------------------GKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDG 125 (381)
T ss_dssp -GGG-EEEEEETTTEEEEEETT-------------------S-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCC
T ss_pred CcccceEEEEeCCCCEEEEcCC-------------------CcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCC
Q ss_pred ---EEEEEcC-CceeEEEecCCCCCe---------EEEEEcCCCCc-EEEEEeCCCeEEEEEcCC-------ceeeeeec
Q 001386 821 ---ISLYIVM-TFKTILTIMPPSPTA---------TSLAFNPHDNN-VIAIGMDDSTILIYNARS-------SEVISKLE 879 (1088)
Q Consensus 821 ---i~iwd~~-~~~~~~~~~~~~~~i---------~~l~~sp~d~~-~lasg~~dg~i~lwd~~~-------~~~~~~l~ 879 (1088)
|++|.+. ....+..+.....++ .|+.-+|.++. ++++...+|.+..|.+.. ++++++|.
T Consensus 126 ~n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~ 205 (381)
T PF02333_consen 126 RNSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK 205 (381)
T ss_dssp T-EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE
T ss_pred CCeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec
Q ss_pred cccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCC--CccCCCCeEEEEEcCCCCEEEEE--eCCeE
Q 001386 880 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG--VMTLAPSETHIQFHKDQTRFLLV--HETHL 955 (1088)
Q Consensus 880 ~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~fs~dg~~l~~~--~d~~i 955 (1088)
.-+ .+..++......+|..+-+|.-|.-|+.+.........+....+ ....-+.+.-..-.....||+++ .+++.
T Consensus 206 ~~s-Q~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf 284 (381)
T PF02333_consen 206 VGS-QPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSF 284 (381)
T ss_dssp -SS--EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEE
T ss_pred CCC-cceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeE
Q ss_pred EEEEcC
Q 001386 956 AIYEAE 961 (1088)
Q Consensus 956 ~vwd~~ 961 (1088)
.||+..
T Consensus 285 ~Vy~r~ 290 (381)
T PF02333_consen 285 AVYDRE 290 (381)
T ss_dssp EEEESS
T ss_pred EEEecC
No 495
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=84.97 E-value=24 Score=39.84 Aligned_cols=113 Identities=11% Similarity=0.070 Sum_probs=60.7
Q ss_pred cCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCC------CEEEEE--e--
Q 001386 882 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ------TRFLLV--H-- 951 (1088)
Q Consensus 882 ~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg------~~l~~~--~-- 951 (1088)
-...+.|+|.|||++|++--..|.|++++-.++.......+..... .........++|+|+- .+|.++ .
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~-~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVN-DAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceec-cCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 3456889999999888876556999998866543211111110000 0012468899999884 234332 1
Q ss_pred -------CCeEEEEEcCcc--ee--eeeeecC----CCcCEEEEEEeeCCCEEEEEeCC
Q 001386 952 -------ETHLAIYEAEEL--TC--LKQWFPI----SSVPISQATFSCDCRMVFTSFVD 995 (1088)
Q Consensus 952 -------d~~i~vwd~~~~--~~--~~~~~~~----h~~~v~~l~fs~dg~~l~s~s~d 995 (1088)
...|.-|.+... .. ...++.+ ....-..++|.|||.+.++.++.
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 223444554321 11 1111211 12334567899999876655543
No 496
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=84.86 E-value=16 Score=40.22 Aligned_cols=151 Identities=9% Similarity=0.087 Sum_probs=88.5
Q ss_pred EEEEcCCCCcEEE-EEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCC--------CEEEEEeCCCcEEEEEcCC-
Q 001386 844 SLAFNPHDNNVIA-IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL--------NILVSSGGDAQIFVWDVDG- 913 (1088)
Q Consensus 844 ~l~~sp~d~~~la-sg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg--------~~las~s~Dg~i~iwd~~~- 913 (1088)
.+..+.++..+|. .|.....++--|+.-|+.+..+.-|... -+.|.|+. +.|+-.|..+ |.--|-.-
T Consensus 471 K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~s-vFrIDPR~~ 547 (776)
T COG5167 471 KIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYS-VFRIDPRAR 547 (776)
T ss_pred hceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccc-eEEeccccc
Confidence 3334433555544 4555668888899999999999988774 57787743 4455444444 32223221
Q ss_pred CceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEE
Q 001386 914 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTS 992 (1088)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~ 992 (1088)
|........+...+... ..+..- ....++|+ +..|-|++||-- |....+.+++-+..|..+..+.+|+++++.
T Consensus 548 gNKi~v~esKdY~tKn~----Fss~~t-TesGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~ilaT 621 (776)
T COG5167 548 GNKIKVVESKDYKTKNK----FSSGMT-TESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHILAT 621 (776)
T ss_pred CCceeeeeehhcccccc----cccccc-ccCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEEEEe
Confidence 11111111111111111 222222 33456666 667889999954 444455566778899999999999998766
Q ss_pred eCCCcEEEEEcC
Q 001386 993 FVDGTLSIHEAS 1004 (1088)
Q Consensus 993 s~dg~v~vwd~~ 1004 (1088)
+. .++.+-|+.
T Consensus 622 Ck-~yllL~d~~ 632 (776)
T COG5167 622 CK-NYLLLTDVP 632 (776)
T ss_pred ec-ceEEEEecc
Confidence 54 466666654
No 497
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.23 E-value=6.4 Score=38.10 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=26.2
Q ss_pred CCeeEEEECCCC------CEEEEEeCCCcEEEEEcCC
Q 001386 883 KRVTGLVFSDAL------NILVSSGGDAQIFVWDVDG 913 (1088)
Q Consensus 883 ~~V~~l~~s~dg------~~las~s~Dg~i~iwd~~~ 913 (1088)
..|.+++|||-| -+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 479999999954 5688999999999998775
No 498
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=82.65 E-value=94 Score=35.39 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=48.8
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001386 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~ 474 (1088)
...+|.++.+...|.+ -+|+.|| +..||..+++.+... ......+|..+.-+-.|+ +..|+.+| |.+.+.+.
T Consensus 163 ~d~~V~aLv~D~~g~l-WvgT~dG-L~~fd~~~gkalql~--s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 163 KDTPVVALVFDANGRL-WVGTPDG-LSYFDAGRGKALQLA--SPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEG 234 (671)
T ss_pred cCccceeeeeeccCcE-EEecCCc-ceEEccccceEEEcC--CCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhh
Confidence 3478889999988854 5567888 888898888755421 122335677777777776 66677555 67776554
No 499
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=82.25 E-value=29 Score=36.48 Aligned_cols=101 Identities=13% Similarity=0.163 Sum_probs=64.0
Q ss_pred cEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEe------cCCeEEEEECCCCCceEEec----CCCCceEEE
Q 001386 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS------VDGKIKAWLYDSLGARVDYD----APGLGCTRM 535 (1088)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~ 535 (1088)
.|++||..+.+-..--.+-.+.|.++.|. .+.++++.|. ....+..||+.+..-...-. .-.+++..+
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~--~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWA--SNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEe--cCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 58999988776655555567889999985 3446666664 35568889887664322222 123567777
Q ss_pred EEc-cCCCEEEEEeeCCCCceeEEEEeCCCCcee
Q 001386 536 AYS-ANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1088)
Q Consensus 536 ~~s-~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1088)
.+. .|+..+..++....+...|..||-.....+
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i 128 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSI 128 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCceEec
Confidence 664 355555544444566778888886554443
No 500
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=81.95 E-value=78 Score=33.96 Aligned_cols=239 Identities=10% Similarity=0.019 Sum_probs=0.0
Q ss_pred EecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCc-
Q 001386 742 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGV- 820 (1088)
Q Consensus 742 ~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~- 820 (1088)
+..++++++.|+.+|...+ +..........-+ +...|+++.+.+.-+.|++-+++.
T Consensus 9 ~~~~~~~lL~GTe~Gly~~-------------------~~~~~~~~~~kl~----~~~~v~q~~v~~~~~lLi~Lsgk~~ 65 (302)
T smart00036 9 ITCDGKWLLVGTEEGLYVL-------------------NISDQPGTLEKLI----GRRSVTQIWVLEENNVLLMISGKKP 65 (302)
T ss_pred cccCCcEEEEEeCCceEEE-------------------EcccCCCCeEEec----CcCceEEEEEEhhhCEEEEEeCCcc
Q ss_pred -EEEEEcCCcee----------------EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccc--
Q 001386 821 -ISLYIVMTFKT----------------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH-- 881 (1088)
Q Consensus 821 -i~iwd~~~~~~----------------~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h-- 881 (1088)
++.+++..... .. .-++......++........++++....+|.++.......-.....+
T Consensus 66 ~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~-~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~ 144 (302)
T smart00036 66 QLYSHPLSALVEKKEALGSARLVIRKNVLT-KIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKF 144 (302)
T ss_pred eEEEEEHHHhhhhhhccCCccccccccceE-eCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccc
Q ss_pred ------cCCeeEEEECCC--CCEEEEEeCCCcEEEEEcCC--CceeeeeeeecCCCCc-cCCCCeEEEEEcCCCCEEEEE
Q 001386 882 ------SKRVTGLVFSDA--LNILVSSGGDAQIFVWDVDG--WGIQTCRSLQTPDGVM-TLAPSETHIQFHKDQTRFLLV 950 (1088)
Q Consensus 882 ------~~~V~~l~~s~d--g~~las~s~Dg~i~iwd~~~--~~~~~~~~~~~~~~~~-~~~~~v~~~~fs~dg~~l~~~ 950 (1088)
..++..+..+++ ...+..|+..+...+.++.. ................ . ++....+..+ .++.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~---p~~i~~l~~~--e~Llc 219 (302)
T smart00036 145 LFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLK---PISVVQVPRD--EFLLC 219 (302)
T ss_pred cccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccccccC---ceEEEEECCC--eEEEE
Q ss_pred eCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEe
Q 001386 951 HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1012 (1088)
Q Consensus 951 ~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~ 1012 (1088)
.|....+-|....+..+.....=.....++++... +|+.-..++ |.|+++.+++++..+
T Consensus 220 ~~~~~v~Vn~~G~~~~r~~~l~w~~~p~~~~~~~p--yll~~~~~~-ievr~l~~~~l~q~i 278 (302)
T smart00036 220 YDEFGVFVNLYGKRRSRNPILHWEFMPESFAYHSP--YLLAFHDNG-IEIRSIKTGELLQEL 278 (302)
T ss_pred ECcEEEEEeCCCCccccceEEEcCCcccEEEEECC--EEEEEcCCc-EEEEECCCCceEEEE
Done!