Query 001386
Match_columns 1088
No_of_seqs 920 out of 5132
Neff 10.7
Searched_HMMs 29240
Date Tue Mar 26 01:25:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001386.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001386hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 6.2E-69 2.1E-73 646.9 79.5 567 327-1055 9-577 (577)
2 1nr0_A Actin interacting prote 100.0 2E-66 6.8E-71 624.7 75.9 576 332-1004 16-610 (611)
3 2ymu_A WD-40 repeat protein; u 100.0 1.8E-63 6.2E-68 599.2 73.1 556 296-1002 20-577 (577)
4 3sfz_A APAF-1, apoptotic pepti 100.0 6.5E-65 2.2E-69 668.3 64.3 620 325-1058 606-1249(1249)
5 1nr0_A Actin interacting prote 100.0 2.5E-63 8.5E-68 597.8 70.4 574 393-1057 15-610 (611)
6 1pgu_A Actin interacting prote 100.0 1.6E-60 5.4E-65 578.9 69.2 559 331-1006 15-615 (615)
7 2oaj_A Protein SNI1; WD40 repe 100.0 3E-58 1E-62 572.2 68.4 631 329-1061 12-831 (902)
8 3sfz_A APAF-1, apoptotic pepti 100.0 2E-58 7E-63 606.6 67.4 590 391-1062 610-1211(1249)
9 1pgu_A Actin interacting prote 100.0 4.9E-57 1.7E-61 548.2 63.2 555 392-1058 14-614 (615)
10 2oaj_A Protein SNI1; WD40 repe 100.0 9.2E-56 3.1E-60 549.8 56.5 596 392-1061 13-786 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 3E-48 1E-52 487.2 59.1 482 326-960 5-502 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 3.1E-45 1.1E-49 459.9 50.7 465 392-1002 9-502 (814)
13 1vyh_C Platelet-activating fac 100.0 9.7E-46 3.3E-50 421.3 40.3 288 328-651 102-409 (410)
14 1got_B GT-beta; complex (GTP-b 100.0 9.2E-40 3.1E-44 362.3 43.6 295 324-650 45-340 (340)
15 3ow8_A WD repeat-containing pr 100.0 4.9E-40 1.7E-44 360.3 40.7 295 324-652 22-320 (321)
16 2pbi_B Guanine nucleotide-bind 100.0 1E-39 3.5E-44 363.5 43.5 298 324-650 54-354 (354)
17 2ynn_A Coatomer subunit beta'; 100.0 2.6E-39 8.8E-44 352.4 38.9 293 325-653 4-302 (304)
18 3frx_A Guanine nucleotide-bind 100.0 7.9E-39 2.7E-43 351.0 41.1 301 325-654 8-318 (319)
19 3iz6_a 40S ribosomal protein R 100.0 1.8E-39 6.3E-44 365.8 35.0 305 325-655 57-377 (380)
20 3ow8_A WD repeat-containing pr 100.0 1.8E-38 6.1E-43 347.8 40.4 292 566-1004 23-320 (321)
21 1vyh_C Platelet-activating fac 100.0 2.7E-38 9.1E-43 359.9 39.1 286 392-715 104-409 (410)
22 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.8E-38 2E-42 348.4 39.4 306 325-658 6-340 (345)
23 1got_B GT-beta; complex (GTP-b 100.0 1.5E-37 5.3E-42 344.4 42.0 286 392-714 51-340 (340)
24 4ery_A WD repeat-containing pr 100.0 2.9E-37 1E-41 338.4 43.1 295 325-652 14-311 (312)
25 4g56_B MGC81050 protein; prote 100.0 4.8E-38 1.7E-42 350.2 35.4 294 331-654 39-344 (357)
26 4gqb_B Methylosome protein 50; 100.0 1.1E-37 3.8E-42 343.8 37.3 299 332-655 28-333 (344)
27 4g56_B MGC81050 protein; prote 100.0 5.6E-38 1.9E-42 349.7 34.7 314 701-1061 19-346 (357)
28 4gqb_B Methylosome protein 50; 100.0 1.5E-37 5.3E-42 342.7 35.1 297 733-1060 29-333 (344)
29 3iz6_a 40S ribosomal protein R 100.0 2.9E-37 9.9E-42 347.9 37.4 318 557-1007 48-377 (380)
30 1r5m_A SIR4-interacting protei 100.0 8.2E-37 2.8E-41 351.7 41.7 327 393-912 42-424 (425)
31 3frx_A Guanine nucleotide-bind 100.0 1.8E-36 6E-41 332.3 41.1 291 567-1006 9-318 (319)
32 1k32_A Tricorn protease; prote 100.0 1.3E-35 4.4E-40 379.4 54.8 523 333-1007 13-639 (1045)
33 2xzm_R RACK1; ribosome, transl 100.0 1E-36 3.6E-41 338.4 38.8 301 325-654 12-341 (343)
34 1erj_A Transcriptional repress 100.0 1.6E-36 5.4E-41 343.6 40.8 303 332-653 62-389 (393)
35 1r5m_A SIR4-interacting protei 100.0 6.2E-37 2.1E-41 352.7 37.9 345 327-716 36-424 (425)
36 2pbi_B Guanine nucleotide-bind 100.0 2.3E-36 8E-41 336.4 41.2 287 392-714 60-354 (354)
37 2hes_X YDR267CP; beta-propelle 100.0 1.2E-36 3.9E-41 335.6 38.3 296 325-653 5-328 (330)
38 2ynn_A Coatomer subunit beta'; 100.0 2.3E-36 8E-41 329.0 38.3 269 392-675 9-281 (304)
39 2pm9_A Protein WEB1, protein t 100.0 3.2E-37 1.1E-41 354.0 32.4 350 335-717 13-414 (416)
40 4aow_A Guanine nucleotide-bind 100.0 4.7E-36 1.6E-40 333.8 40.5 303 325-655 29-339 (340)
41 1gxr_A ESG1, transducin-like e 100.0 4.8E-36 1.6E-40 333.2 40.4 324 333-763 8-335 (337)
42 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.6E-36 1.9E-40 332.4 40.4 299 732-1061 13-338 (345)
43 1k32_A Tricorn protease; prote 100.0 9.5E-35 3.2E-39 371.4 56.9 529 395-1060 13-639 (1045)
44 2hes_X YDR267CP; beta-propelle 100.0 3.6E-35 1.2E-39 323.7 43.0 306 564-1005 3-328 (330)
45 4ery_A WD repeat-containing pr 100.0 3.2E-35 1.1E-39 322.2 41.5 291 391-716 18-311 (312)
46 2xzm_R RACK1; ribosome, transl 100.0 3.1E-35 1.1E-39 326.5 40.7 292 566-1007 12-342 (343)
47 3vl1_A 26S proteasome regulato 100.0 7.1E-36 2.4E-40 343.1 35.6 353 336-828 58-419 (420)
48 3vl1_A 26S proteasome regulato 100.0 1.3E-35 4.4E-40 341.0 36.6 347 397-913 57-419 (420)
49 3gre_A Serine/threonine-protei 100.0 6.3E-36 2.2E-40 345.3 34.0 384 339-910 32-437 (437)
50 1erj_A Transcriptional repress 100.0 5.9E-35 2E-39 330.7 38.8 292 394-716 62-388 (393)
51 2pm9_A Protein WEB1, protein t 100.0 1.3E-36 4.6E-41 348.8 25.3 337 579-1006 13-415 (416)
52 1gxr_A ESG1, transducin-like e 100.0 4.3E-34 1.5E-38 317.4 43.7 321 297-651 14-335 (337)
53 3dm0_A Maltose-binding peripla 100.0 5.9E-35 2E-39 357.4 39.7 298 327-652 375-692 (694)
54 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5.5E-34 1.9E-38 329.5 44.8 329 326-766 110-443 (445)
55 4aow_A Guanine nucleotide-bind 100.0 5.8E-34 2E-38 316.8 41.9 298 562-1007 25-339 (340)
56 3v7d_B Cell division control p 100.0 1.2E-33 4.3E-38 328.9 46.5 290 324-658 111-426 (464)
57 3ei3_B DNA damage-binding prot 100.0 1.4E-34 4.7E-39 327.6 37.0 298 324-653 63-382 (383)
58 1sq9_A Antiviral protein SKI8; 100.0 1.6E-34 5.5E-39 329.1 36.9 305 325-654 7-396 (397)
59 2j04_B YDR362CP, TAU91; beta p 100.0 6.7E-36 2.3E-40 346.0 25.3 342 325-716 125-516 (524)
60 3zwl_B Eukaryotic translation 100.0 1E-33 3.6E-38 318.8 42.0 291 327-655 25-348 (369)
61 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.2E-33 1.1E-37 323.1 45.1 319 392-871 114-442 (445)
62 3odt_A Protein DOA1; ubiquitin 100.0 1.2E-33 4E-38 310.3 38.5 293 324-658 8-301 (313)
63 2j04_B YDR362CP, TAU91; beta p 100.0 3.8E-35 1.3E-39 339.7 27.8 350 395-871 132-517 (524)
64 3i2n_A WD repeat-containing pr 100.0 3.1E-34 1.1E-38 321.5 33.8 300 323-655 7-355 (357)
65 3v7d_B Cell division control p 100.0 7E-33 2.4E-37 322.6 45.7 342 523-1002 115-460 (464)
66 3gre_A Serine/threonine-protei 100.0 6.4E-34 2.2E-38 328.5 35.9 274 322-656 50-362 (437)
67 3k26_A Polycomb protein EED; W 100.0 3.1E-34 1E-38 322.8 30.5 295 328-652 12-365 (366)
68 4e54_B DNA damage-binding prot 100.0 3.5E-34 1.2E-38 329.4 29.9 304 325-656 110-433 (435)
69 1k8k_C P40, ARP2/3 complex 41 100.0 4.9E-33 1.7E-37 313.7 37.4 291 330-654 4-362 (372)
70 4h5i_A Guanine nucleotide-exch 100.0 1.3E-33 4.4E-38 315.2 32.0 203 797-1006 132-344 (365)
71 4a11_B DNA excision repair pro 100.0 2.8E-33 9.6E-38 320.2 34.4 348 556-1058 24-405 (408)
72 4e54_B DNA damage-binding prot 100.0 1.5E-33 5E-38 324.2 32.1 303 568-1009 112-434 (435)
73 3ei3_B DNA damage-binding prot 100.0 4.6E-33 1.6E-37 315.1 35.4 307 559-1005 57-382 (383)
74 4h5i_A Guanine nucleotide-exch 100.0 1.4E-33 4.8E-38 314.9 30.3 298 336-654 16-344 (365)
75 4aez_A CDC20, WD repeat-contai 100.0 1.6E-32 5.4E-37 312.2 38.7 298 329-659 86-386 (401)
76 3dwl_C Actin-related protein 2 100.0 4.1E-34 1.4E-38 323.1 25.3 289 330-651 7-377 (377)
77 4gga_A P55CDC, cell division c 100.0 5.7E-32 1.9E-36 309.6 43.2 289 336-661 107-403 (420)
78 2pm7_B Protein transport prote 100.0 2.2E-32 7.6E-37 296.5 35.8 254 327-608 2-284 (297)
79 1k8k_C P40, ARP2/3 complex 41 100.0 1.3E-32 4.3E-37 310.3 34.5 343 526-1008 5-364 (372)
80 3zwl_B Eukaryotic translation 100.0 5.2E-32 1.8E-36 304.9 39.4 288 390-717 26-346 (369)
81 2j04_A TAU60, YPL007P, hypothe 100.0 4.7E-33 1.6E-37 310.4 30.1 316 332-754 13-350 (588)
82 1sq9_A Antiviral protein SKI8; 100.0 2.8E-32 9.5E-37 310.6 37.1 296 478-914 9-396 (397)
83 3dm0_A Maltose-binding peripla 100.0 8.4E-32 2.9E-36 329.4 43.5 211 436-655 377-594 (694)
84 2j04_A TAU60, YPL007P, hypothe 100.0 5.8E-34 2E-38 317.7 20.6 330 528-993 14-349 (588)
85 4a11_B DNA excision repair pro 100.0 8.4E-32 2.9E-36 307.9 37.9 348 324-716 33-404 (408)
86 2pm7_B Protein transport prote 100.0 6.4E-32 2.2E-36 292.8 34.7 252 392-653 5-285 (297)
87 4ggc_A P55CDC, cell division c 100.0 5.7E-31 2E-35 289.5 41.6 282 337-654 28-316 (318)
88 3k26_A Polycomb protein EED; W 100.0 9.9E-32 3.4E-36 302.2 34.7 299 391-764 13-365 (366)
89 3odt_A Protein DOA1; ubiquitin 100.0 7.2E-31 2.5E-35 288.0 40.3 295 565-1013 8-304 (313)
90 3i2n_A WD repeat-containing pr 100.0 3.1E-31 1.1E-35 297.0 35.6 310 391-765 13-353 (357)
91 3dw8_B Serine/threonine-protei 100.0 1.2E-31 4E-36 310.8 33.1 301 332-652 26-445 (447)
92 3bg1_A Protein SEC13 homolog; 100.0 4.3E-32 1.5E-36 297.0 25.7 253 328-608 7-292 (316)
93 1yfq_A Cell cycle arrest prote 100.0 3E-31 1E-35 295.1 32.3 286 328-650 5-321 (342)
94 1p22_A F-BOX/WD-repeat protein 100.0 9.8E-31 3.3E-35 301.0 36.7 278 330-657 129-418 (435)
95 4aez_A CDC20, WD repeat-contai 100.0 1.2E-30 4E-35 296.7 36.7 284 581-1013 96-388 (401)
96 3mmy_A MRNA export factor; mRN 100.0 7.3E-31 2.5E-35 295.3 33.9 295 322-652 27-345 (368)
97 3dwl_C Actin-related protein 2 100.0 8.5E-32 2.9E-36 304.1 25.7 241 394-652 9-280 (377)
98 2aq5_A Coronin-1A; WD40 repeat 100.0 1.1E-30 3.7E-35 297.4 33.2 297 335-655 35-344 (402)
99 4gga_A P55CDC, cell division c 100.0 4.6E-30 1.6E-34 293.7 37.2 281 397-718 106-396 (420)
100 3bg1_A Protein SEC13 homolog; 100.0 2E-31 6.7E-36 291.7 23.7 250 391-652 8-292 (316)
101 3f3f_A Nucleoporin SEH1; struc 100.0 2E-30 6.9E-35 289.3 30.9 307 327-660 4-344 (351)
102 3dw8_B Serine/threonine-protei 100.0 4E-30 1.4E-34 297.9 34.5 253 395-657 27-377 (447)
103 4ggc_A P55CDC, cell division c 100.0 9.8E-29 3.3E-33 271.6 41.7 283 737-1061 28-318 (318)
104 3jrp_A Fusion protein of prote 100.0 8.1E-30 2.8E-34 288.1 33.1 261 325-612 2-290 (379)
105 1p22_A F-BOX/WD-repeat protein 100.0 1.7E-29 5.9E-34 290.5 34.6 274 393-718 130-415 (435)
106 3jrp_A Fusion protein of prote 100.0 1.2E-29 4.1E-34 286.7 32.5 254 392-655 7-289 (379)
107 3mmy_A MRNA export factor; mRN 100.0 1E-28 3.5E-33 277.7 36.7 290 392-716 35-345 (368)
108 1yfq_A Cell cycle arrest prote 100.0 4.3E-29 1.5E-33 277.7 31.3 285 392-715 7-322 (342)
109 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2E-28 6.7E-33 283.0 37.5 300 336-653 6-391 (450)
110 3f3f_A Nucleoporin SEH1; struc 100.0 5.2E-29 1.8E-33 277.8 30.3 296 390-718 5-338 (351)
111 3vu4_A KMHSV2; beta-propeller 100.0 7E-29 2.4E-33 276.1 30.8 283 326-654 11-337 (355)
112 1l0q_A Surface layer protein; 100.0 1.4E-27 4.7E-32 271.0 42.0 279 348-665 3-287 (391)
113 2w18_A PALB2, fancn, partner a 100.0 1.1E-27 3.9E-32 250.4 36.9 293 444-911 42-355 (356)
114 1l0q_A Surface layer protein; 100.0 6E-27 2E-31 265.7 41.9 328 457-949 4-364 (391)
115 3jro_A Fusion protein of prote 100.0 5.2E-29 1.8E-33 305.8 26.2 258 327-611 2-287 (753)
116 2aq5_A Coronin-1A; WD40 repeat 100.0 6E-28 2.1E-32 274.7 33.0 285 397-716 35-341 (402)
117 3vu4_A KMHSV2; beta-propeller 100.0 9.3E-28 3.2E-32 267.0 33.2 293 559-964 3-338 (355)
118 3bws_A Protein LP49; two-domai 100.0 2.8E-27 9.6E-32 272.6 38.3 300 397-764 123-431 (433)
119 2w18_A PALB2, fancn, partner a 100.0 1.2E-27 4.1E-32 250.2 31.2 270 636-1003 56-355 (356)
120 3jro_A Fusion protein of prote 100.0 1.5E-28 5.1E-33 301.8 27.5 254 392-655 5-287 (753)
121 2xyi_A Probable histone-bindin 100.0 9.7E-28 3.3E-32 275.0 32.2 265 328-610 122-411 (430)
122 3bws_A Protein LP49; two-domai 100.0 3.2E-27 1.1E-31 272.1 36.4 293 326-652 115-431 (433)
123 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.2E-27 1.4E-31 271.8 35.9 300 735-1064 5-397 (450)
124 3lrv_A PRE-mRNA-splicing facto 100.0 1.7E-27 6E-32 264.1 29.0 278 448-913 43-333 (343)
125 2xyi_A Probable histone-bindin 100.0 6.8E-27 2.3E-31 268.0 34.3 254 390-654 122-411 (430)
126 4gq1_A NUP37; propeller, trans 100.0 1.6E-28 5.5E-33 277.4 20.4 245 342-614 26-291 (393)
127 3lrv_A PRE-mRNA-splicing facto 100.0 4.9E-28 1.7E-32 268.6 23.9 272 339-652 41-332 (343)
128 1nir_A Nitrite reductase; hemo 100.0 2.6E-26 8.9E-31 268.4 38.4 343 536-970 144-522 (543)
129 1nir_A Nitrite reductase; hemo 100.0 4.7E-26 1.6E-30 266.2 39.3 346 341-882 144-525 (543)
130 4gq1_A NUP37; propeller, trans 100.0 1.4E-27 4.8E-32 269.7 20.5 276 328-651 83-387 (393)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.7E-25 6E-30 253.8 30.7 307 333-676 61-409 (415)
132 2ecf_A Dipeptidyl peptidase IV 99.9 9.5E-24 3.2E-28 261.1 36.0 304 334-652 36-412 (741)
133 2hqs_A Protein TOLB; TOLB, PAL 99.9 7E-24 2.4E-28 240.6 30.2 306 441-895 62-410 (415)
134 2ecf_A Dipeptidyl peptidase IV 99.9 3.5E-23 1.2E-27 256.0 36.1 243 797-1059 150-460 (741)
135 1xfd_A DIP, dipeptidyl aminope 99.9 2.5E-23 8.5E-28 256.7 29.3 313 336-679 18-424 (723)
136 1xfd_A DIP, dipeptidyl aminope 99.9 6.6E-23 2.3E-27 252.9 30.7 386 531-1012 18-450 (723)
137 3u4y_A Uncharacterized protein 99.9 1.3E-21 4.4E-26 216.0 35.7 280 340-654 3-305 (331)
138 2z3z_A Dipeptidyl aminopeptida 99.9 2.6E-21 8.9E-26 237.6 36.1 238 399-652 28-341 (706)
139 3vgz_A Uncharacterized protein 99.9 4.1E-21 1.4E-25 214.1 34.2 274 335-644 41-335 (353)
140 2z3z_A Dipeptidyl aminopeptida 99.9 1.7E-21 5.8E-26 239.3 32.5 243 800-1060 122-437 (706)
141 1ri6_A Putative isomerase YBHE 99.9 1.9E-20 6.5E-25 207.8 34.7 276 346-652 4-307 (343)
142 3u4y_A Uncharacterized protein 99.9 2.3E-20 7.8E-25 205.9 35.0 285 741-1061 4-307 (331)
143 3vgz_A Uncharacterized protein 99.9 6.6E-20 2.3E-24 204.3 36.9 273 734-1049 40-335 (353)
144 1pby_B Quinohemoprotein amine 99.9 2.2E-20 7.5E-25 206.7 31.8 281 591-1015 2-320 (337)
145 1ri6_A Putative isomerase YBHE 99.9 4.6E-20 1.6E-24 204.7 34.0 275 749-1063 8-313 (343)
146 2ojh_A Uncharacterized protein 99.9 9.6E-21 3.3E-25 205.1 25.7 257 352-644 17-293 (297)
147 1pby_B Quinohemoprotein amine 99.9 2.5E-20 8.6E-25 206.2 28.8 278 349-661 3-318 (337)
148 1z68_A Fibroblast activation p 99.9 7.3E-21 2.5E-25 234.0 25.1 378 534-1013 20-451 (719)
149 3o4h_A Acylamino-acid-releasin 99.8 5.3E-20 1.8E-24 220.0 26.1 272 334-652 21-314 (582)
150 3hfq_A Uncharacterized protein 99.8 1E-18 3.5E-23 194.0 34.2 248 797-1061 38-320 (347)
151 1z68_A Fibroblast activation p 99.8 3.6E-20 1.2E-24 227.9 24.3 278 338-652 19-390 (719)
152 2ojh_A Uncharacterized protein 99.8 1.2E-19 4.2E-24 196.3 25.5 245 324-600 31-293 (297)
153 3pe7_A Oligogalacturonate lyas 99.8 3.3E-19 1.1E-23 201.6 29.5 308 318-652 14-381 (388)
154 3hfq_A Uncharacterized protein 99.8 7.7E-19 2.6E-23 195.0 31.9 279 706-1010 14-324 (347)
155 4a5s_A Dipeptidyl peptidase 4 99.8 9.2E-19 3.2E-23 214.9 34.1 279 335-655 17-355 (740)
156 3scy_A Hypothetical bacterial 99.8 1.7E-17 6E-22 185.1 41.6 311 538-983 10-360 (361)
157 2oit_A Nucleoporin 214KDA; NH2 99.8 1.4E-18 4.8E-23 197.3 32.5 312 735-1058 37-405 (434)
158 2oit_A Nucleoporin 214KDA; NH2 99.8 1.3E-18 4.6E-23 197.5 31.2 262 335-607 37-331 (434)
159 3scy_A Hypothetical bacterial 99.8 1E-17 3.4E-22 187.1 37.7 301 341-672 8-359 (361)
160 3o4h_A Acylamino-acid-releasin 99.8 3.2E-19 1.1E-23 213.2 26.8 236 396-651 21-274 (582)
161 4a5s_A Dipeptidyl peptidase 4 99.8 3.5E-18 1.2E-22 209.7 36.4 380 532-1013 19-457 (740)
162 1jmx_B Amine dehydrogenase; ox 99.8 3.1E-18 1.1E-22 190.4 28.8 283 338-661 3-333 (349)
163 1jmx_B Amine dehydrogenase; ox 99.8 1.7E-17 5.8E-22 184.4 31.4 297 496-881 8-335 (349)
164 3pe7_A Oligogalacturonate lyas 99.8 4.8E-18 1.6E-22 192.0 27.2 256 392-655 26-331 (388)
165 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.5E-17 8.6E-22 183.7 30.8 249 799-1059 40-342 (365)
166 3c5m_A Oligogalacturonate lyas 99.8 3.4E-17 1.2E-21 185.6 29.8 300 323-654 19-385 (396)
167 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.1E-16 3.7E-21 178.6 30.5 250 395-654 38-342 (365)
168 2oiz_A Aromatic amine dehydrog 99.8 1.8E-16 6E-21 175.6 31.3 297 344-676 13-359 (361)
169 2oiz_A Aromatic amine dehydrog 99.8 3.6E-16 1.2E-20 173.1 32.7 304 507-895 29-360 (361)
170 1qks_A Cytochrome CD1 nitrite 99.7 1.9E-14 6.3E-19 167.1 39.0 329 554-970 176-546 (567)
171 1qks_A Cytochrome CD1 nitrite 99.7 3.1E-14 1.1E-18 165.2 40.6 325 588-1013 165-546 (567)
172 3azo_A Aminopeptidase; POP fam 99.7 6.2E-16 2.1E-20 188.1 27.7 294 328-657 17-373 (662)
173 3fvz_A Peptidyl-glycine alpha- 99.7 4.9E-15 1.7E-19 162.2 29.3 249 798-1058 23-322 (329)
174 2gop_A Trilobed protease; beta 99.7 2.8E-15 9.5E-20 166.2 27.5 262 336-652 16-330 (347)
175 1q7f_A NHL, brain tumor CG1071 99.7 1.7E-14 5.7E-19 154.8 32.8 242 797-1060 28-282 (286)
176 3c5m_A Oligogalacturonate lyas 99.7 5E-16 1.7E-20 175.9 21.8 244 398-655 37-331 (396)
177 3fvz_A Peptidyl-glycine alpha- 99.7 4.9E-14 1.7E-18 154.3 34.4 247 335-609 24-322 (329)
178 3azo_A Aminopeptidase; POP fam 99.7 1.1E-14 3.8E-19 177.0 30.6 250 392-651 19-321 (662)
179 4a2l_A BT_4663, two-component 99.7 3E-10 1E-14 140.4 70.4 584 336-1057 44-658 (795)
180 4a2l_A BT_4663, two-component 99.7 2E-10 6.7E-15 142.1 68.1 532 335-1003 88-657 (795)
181 1q7f_A NHL, brain tumor CG1071 99.7 1.2E-13 4.1E-18 148.1 32.7 248 331-610 26-281 (286)
182 2dg1_A DRP35, lactonase; beta 99.6 8.1E-14 2.8E-18 153.3 30.5 274 335-644 6-301 (333)
183 2xdw_A Prolyl endopeptidase; a 99.6 1.1E-13 3.8E-18 168.9 32.0 250 394-655 122-416 (710)
184 2dg1_A DRP35, lactonase; beta 99.6 2.2E-13 7.4E-18 149.9 29.3 273 735-1049 6-301 (333)
185 3v9f_A Two-component system se 99.6 3.9E-09 1.3E-13 130.1 70.2 593 336-1058 20-656 (781)
186 2xdw_A Prolyl endopeptidase; a 99.6 1.5E-13 5E-18 167.9 29.8 250 332-611 122-416 (710)
187 3e5z_A Putative gluconolactona 99.6 2.4E-13 8.4E-18 146.5 28.1 250 324-612 17-289 (296)
188 2gop_A Trilobed protease; beta 99.6 3.5E-13 1.2E-17 149.2 29.1 220 800-1057 60-330 (347)
189 2bkl_A Prolyl endopeptidase; m 99.6 1.4E-13 4.8E-18 167.5 25.7 249 393-655 117-399 (695)
190 3no2_A Uncharacterized protein 99.6 4.2E-13 1.4E-17 141.6 25.9 247 809-1071 4-265 (276)
191 3sjl_D Methylamine dehydrogena 99.6 2.3E-12 7.9E-17 139.3 31.9 204 801-1013 139-371 (386)
192 2mad_H Methylamine dehydrogena 99.6 8.5E-12 2.9E-16 137.7 37.0 203 802-1012 128-357 (373)
193 3dsm_A Uncharacterized protein 99.6 5E-13 1.7E-17 145.9 26.7 278 355-661 15-309 (328)
194 3dsm_A Uncharacterized protein 99.6 1.3E-12 4.3E-17 142.7 29.6 273 705-1013 14-309 (328)
195 2z2n_A Virginiamycin B lyase; 99.6 2E-11 6.8E-16 131.7 37.9 285 330-654 10-296 (299)
196 3no2_A Uncharacterized protein 99.6 1.8E-12 6.1E-17 136.8 28.5 245 349-629 7-272 (276)
197 2mad_H Methylamine dehydrogena 99.6 1.5E-11 5E-16 135.9 37.0 282 341-659 27-356 (373)
198 2z2n_A Virginiamycin B lyase; 99.5 3.4E-11 1.2E-15 129.8 39.0 279 733-1058 13-295 (299)
199 3sjl_D Methylamine dehydrogena 99.5 4.6E-12 1.6E-16 137.0 30.3 314 494-893 39-384 (386)
200 2bkl_A Prolyl endopeptidase; m 99.5 3.2E-13 1.1E-17 164.3 24.0 249 332-612 118-400 (695)
201 3e5z_A Putative gluconolactona 99.5 2E-12 6.9E-17 139.3 27.2 238 392-654 23-287 (296)
202 1rwi_B Serine/threonine-protei 99.5 1.6E-12 5.5E-17 137.9 25.1 239 800-1060 25-266 (270)
203 3v9f_A Two-component system se 99.5 6E-08 2E-12 119.5 68.1 555 396-1057 18-610 (781)
204 1rwi_B Serine/threonine-protei 99.5 3.2E-12 1.1E-16 135.6 25.3 241 336-612 25-267 (270)
205 1yr2_A Prolyl oligopeptidase; 99.5 1.8E-12 6.2E-17 158.8 26.1 247 394-655 160-443 (741)
206 3c75_H MADH, methylamine dehyd 99.5 9.4E-12 3.2E-16 137.4 28.8 205 802-1012 180-409 (426)
207 2qc5_A Streptogramin B lactona 99.5 2.4E-10 8.2E-15 123.2 37.5 279 332-651 17-298 (300)
208 2qc5_A Streptogramin B lactona 99.5 3.3E-10 1.1E-14 122.1 38.1 277 733-1056 18-298 (300)
209 3c75_H MADH, methylamine dehyd 99.4 1E-11 3.6E-16 137.0 24.0 281 344-660 82-409 (426)
210 1yr2_A Prolyl oligopeptidase; 99.4 8E-12 2.7E-16 153.1 25.0 248 332-611 160-443 (741)
211 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.4E-10 4.8E-15 126.0 28.7 251 330-609 13-299 (314)
212 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.4E-10 4.7E-15 126.1 27.4 245 736-1006 19-300 (314)
213 1xip_A Nucleoporin NUP159; bet 99.3 1.8E-10 6.2E-15 125.2 25.9 174 799-993 38-232 (388)
214 3hrp_A Uncharacterized protein 99.3 4.1E-10 1.4E-14 126.2 29.5 248 799-1056 131-408 (409)
215 3iuj_A Prolyl endopeptidase; h 99.3 1.5E-10 5.1E-15 140.2 27.0 252 332-613 126-409 (693)
216 3hrp_A Uncharacterized protein 99.3 7.4E-10 2.5E-14 124.1 30.2 242 335-607 131-408 (409)
217 3g4e_A Regucalcin; six bladed 99.3 9.2E-10 3.1E-14 118.1 29.5 229 736-995 14-262 (297)
218 2qe8_A Uncharacterized protein 99.3 4.7E-11 1.6E-15 131.2 19.5 273 335-646 17-314 (343)
219 1mda_H Methylamine dehydrogena 99.3 7.9E-11 2.7E-15 128.0 19.9 195 803-1013 128-354 (368)
220 4a0p_A LRP6, LRP-6, low-densit 99.3 8.5E-06 2.9E-10 95.7 63.9 532 410-1012 8-556 (628)
221 3g4e_A Regucalcin; six bladed 99.3 2.1E-09 7.3E-14 115.2 29.9 230 333-598 11-261 (297)
222 3dr2_A Exported gluconolactona 99.3 5E-10 1.7E-14 120.8 24.6 239 324-601 34-299 (305)
223 2qe8_A Uncharacterized protein 99.3 2.5E-10 8.5E-15 125.4 21.8 272 735-1054 17-317 (343)
224 1mda_H Methylamine dehydrogena 99.2 2E-10 6.9E-15 124.8 19.9 273 347-663 32-356 (368)
225 3iuj_A Prolyl endopeptidase; h 99.2 3.9E-10 1.3E-14 136.6 23.3 245 394-655 126-407 (693)
226 1kb0_A Quinohemoprotein alcoho 99.2 4.4E-09 1.5E-13 125.8 30.8 228 818-1058 189-567 (677)
227 1xip_A Nucleoporin NUP159; bet 99.2 9.7E-10 3.3E-14 119.5 22.3 184 336-549 39-233 (388)
228 3q7m_A Lipoprotein YFGL, BAMB; 99.2 1.6E-08 5.4E-13 112.9 32.6 209 818-1055 152-375 (376)
229 2ghs_A AGR_C_1268P; regucalcin 99.2 6.2E-09 2.1E-13 113.2 28.2 225 336-599 50-292 (326)
230 3s94_A LRP-6, low-density lipo 99.2 1.9E-05 6.7E-10 92.6 59.4 521 416-1007 16-553 (619)
231 1kb0_A Quinohemoprotein alcoho 99.2 9.1E-09 3.1E-13 123.1 30.4 199 457-660 79-353 (677)
232 1yiq_A Quinohemoprotein alcoho 99.2 4.8E-09 1.7E-13 125.7 27.9 204 408-619 70-348 (689)
233 3q7m_A Lipoprotein YFGL, BAMB; 99.2 3.6E-08 1.2E-12 109.9 33.4 151 457-619 55-217 (376)
234 2ghs_A AGR_C_1268P; regucalcin 99.1 2.4E-08 8.3E-13 108.4 30.1 225 399-643 51-292 (326)
235 1yiq_A Quinohemoprotein alcoho 99.1 8E-09 2.7E-13 123.8 28.6 194 818-1014 182-514 (689)
236 3dr2_A Exported gluconolactona 99.1 8E-09 2.7E-13 111.3 25.8 235 393-647 41-301 (305)
237 2ece_A 462AA long hypothetical 99.1 1.7E-08 5.8E-13 109.4 27.5 237 744-993 93-399 (462)
238 2ece_A 462AA long hypothetical 99.1 4.7E-08 1.6E-12 105.9 29.6 230 808-1046 93-399 (462)
239 1fwx_A Nitrous oxide reductase 99.1 3.1E-08 1.1E-12 111.4 26.3 329 455-917 15-435 (595)
240 3hxj_A Pyrrolo-quinoline quino 99.0 6.1E-09 2.1E-13 113.9 20.0 301 446-913 24-324 (330)
241 3s94_A LRP-6, low-density lipo 99.0 0.00017 5.9E-09 84.6 57.1 478 464-1008 17-513 (619)
242 4a0p_A LRP6, LRP-6, low-densit 99.0 0.00019 6.4E-09 84.4 65.2 533 349-968 9-555 (628)
243 3hxj_A Pyrrolo-quinoline quino 99.0 1.8E-08 6E-13 110.2 20.4 268 338-660 23-290 (330)
244 1fwx_A Nitrous oxide reductase 99.0 2.2E-08 7.4E-13 112.7 21.1 238 808-1062 99-435 (595)
245 2hz6_A Endoplasmic reticulum t 99.0 2.3E-10 7.8E-15 126.6 4.8 190 851-1066 8-200 (369)
246 2hz6_A Endoplasmic reticulum t 98.9 7.6E-10 2.6E-14 122.4 7.5 191 407-618 8-201 (369)
247 1npe_A Nidogen, entactin; glyc 98.9 6.9E-06 2.3E-10 86.1 34.1 224 397-635 36-263 (267)
248 1kv9_A Type II quinohemoprotei 98.9 1.6E-06 5.6E-11 103.5 32.6 376 457-901 68-520 (668)
249 2iwa_A Glutamine cyclotransfer 98.8 5.6E-07 1.9E-11 91.9 21.6 200 800-1007 22-239 (266)
250 1w6s_A Methanol dehydrogenase 98.8 5.7E-06 1.9E-10 96.3 32.8 167 844-1014 245-512 (599)
251 1npe_A Nidogen, entactin; glyc 98.8 1.5E-05 5.1E-10 83.5 33.5 255 409-674 2-260 (267)
252 2iwa_A Glutamine cyclotransfer 98.8 1.5E-06 5.3E-11 88.6 24.4 217 829-1060 9-239 (266)
253 3ei3_A DNA damage-binding prot 98.8 0.0019 6.4E-08 81.1 67.0 570 399-1058 329-999 (1158)
254 3ei3_A DNA damage-binding prot 98.7 0.0026 8.9E-08 79.9 68.4 573 338-1005 330-999 (1158)
255 2ad6_A Methanol dehydrogenase 98.7 7.7E-06 2.6E-10 95.4 30.7 376 457-899 64-523 (571)
256 1kv9_A Type II quinohemoprotei 98.7 4.5E-06 1.5E-10 99.7 28.8 268 349-641 119-520 (668)
257 1flg_A Protein (quinoprotein e 98.7 3.8E-05 1.3E-09 89.6 35.5 150 862-1014 291-525 (582)
258 1flg_A Protein (quinoprotein e 98.7 5E-05 1.7E-09 88.6 36.2 380 458-901 71-548 (582)
259 2ad6_A Methanol dehydrogenase 98.7 3.8E-05 1.3E-09 89.5 34.9 178 803-990 239-522 (571)
260 1w6s_A Methanol dehydrogenase 98.6 1.7E-05 5.7E-10 92.3 30.8 385 457-901 64-535 (599)
261 3ott_A Two-component system se 98.6 0.0034 1.2E-07 76.6 68.6 571 335-1058 22-626 (758)
262 3nol_A Glutamine cyclotransfer 98.6 6E-06 2.1E-10 82.9 21.6 186 799-994 43-244 (262)
263 3nok_A Glutaminyl cyclase; bet 98.6 2.5E-06 8.4E-11 85.6 18.7 198 830-1045 44-253 (268)
264 3nol_A Glutamine cyclotransfer 98.6 6.2E-06 2.1E-10 82.8 21.6 185 444-642 45-244 (262)
265 2xe4_A Oligopeptidase B; hydro 98.5 1E-05 3.5E-10 98.3 26.9 248 336-612 175-461 (751)
266 2fp8_A Strictosidine synthase; 98.5 4.7E-05 1.6E-09 82.2 28.7 238 800-1060 20-315 (322)
267 3mbr_X Glutamine cyclotransfer 98.5 2.5E-05 8.4E-10 77.8 23.7 210 830-1056 10-233 (243)
268 3nok_A Glutaminyl cyclase; bet 98.5 3.5E-06 1.2E-10 84.5 17.5 184 799-993 55-253 (268)
269 2p4o_A Hypothetical protein; p 98.5 4.6E-05 1.6E-09 81.5 27.7 231 799-1049 32-279 (306)
270 2fp8_A Strictosidine synthase; 98.5 2.8E-05 9.6E-10 84.0 25.8 240 397-653 19-313 (322)
271 3mbr_X Glutamine cyclotransfer 98.4 3.9E-05 1.3E-09 76.4 22.6 187 798-994 20-223 (243)
272 2p4o_A Hypothetical protein; p 98.4 9.6E-05 3.3E-09 79.0 27.6 228 397-643 32-278 (306)
273 3v64_C Agrin; beta propeller, 98.4 0.00062 2.1E-08 73.9 34.3 250 334-618 33-284 (349)
274 2xbg_A YCF48-like protein; pho 98.4 0.00046 1.6E-08 74.3 32.9 278 735-1056 36-320 (327)
275 3v65_B Low-density lipoprotein 98.4 0.00042 1.4E-08 76.5 32.5 248 336-618 78-327 (386)
276 1k3i_A Galactose oxidase precu 98.4 1.9E-05 6.5E-10 94.6 23.2 278 339-642 190-530 (656)
277 1k3i_A Galactose oxidase precu 98.3 6.9E-05 2.4E-09 89.7 27.0 118 534-654 190-324 (656)
278 3qqz_A Putative uncharacterize 98.3 0.00021 7.3E-09 72.3 25.9 207 328-562 20-251 (255)
279 3v64_C Agrin; beta propeller, 98.3 0.0012 4.2E-08 71.6 33.5 249 397-661 34-283 (349)
280 3qqz_A Putative uncharacterize 98.3 0.00062 2.1E-08 69.0 28.8 218 834-1056 21-251 (255)
281 1ijq_A LDL receptor, low-densi 98.3 0.0016 5.5E-08 69.6 33.9 238 410-660 3-245 (316)
282 3v65_B Low-density lipoprotein 98.3 0.00089 3E-08 73.9 32.6 247 399-661 79-326 (386)
283 1ijq_A LDL receptor, low-densi 98.3 0.002 7E-08 68.8 33.4 232 357-617 10-246 (316)
284 3tc9_A Hypothetical hydrolase; 98.3 0.00025 8.6E-09 79.4 27.1 247 799-1057 137-429 (430)
285 3ott_A Two-component system se 98.2 0.025 8.6E-07 68.9 62.4 530 335-1003 63-624 (758)
286 2xe4_A Oligopeptidase B; hydro 98.2 0.00018 6.2E-09 87.3 27.5 200 394-607 170-398 (751)
287 3p5b_L Low density lipoprotein 98.2 0.0029 9.8E-08 70.1 34.2 239 410-661 85-328 (400)
288 4hw6_A Hypothetical protein, I 98.2 0.00037 1.3E-08 78.1 26.7 248 800-1057 140-432 (433)
289 2xbg_A YCF48-like protein; pho 98.1 0.0052 1.8E-07 66.0 33.5 282 335-651 36-320 (327)
290 3p5b_L Low density lipoprotein 98.0 0.0074 2.5E-07 66.7 33.2 250 338-617 76-328 (400)
291 3sov_A LRP-6, low-density lipo 98.0 0.0086 2.9E-07 63.7 31.2 234 356-618 12-247 (318)
292 4hw6_A Hypothetical protein, I 98.0 0.00057 2E-08 76.5 22.9 243 737-1004 141-432 (433)
293 3tc9_A Hypothetical hydrolase; 97.9 0.0012 4.1E-08 73.9 24.8 243 397-652 137-429 (430)
294 3kya_A Putative phosphatase; s 97.9 0.0028 9.5E-08 70.7 26.7 253 800-1060 140-477 (496)
295 3sov_A LRP-6, low-density lipo 97.9 0.015 5.2E-07 61.7 30.5 234 416-661 11-246 (318)
296 3m0c_C LDL receptor, low-densi 97.8 0.015 5.1E-07 69.8 33.0 238 410-660 397-639 (791)
297 2ism_A Putative oxidoreductase 97.8 0.0064 2.2E-07 65.9 27.1 230 799-1046 31-333 (352)
298 3kya_A Putative phosphatase; s 97.8 0.0064 2.2E-07 67.8 27.2 253 736-1010 140-480 (496)
299 3amr_A 3-phytase; beta-propell 97.8 0.0076 2.6E-07 63.3 25.9 198 809-1015 39-274 (355)
300 3m0c_C LDL receptor, low-densi 97.8 0.038 1.3E-06 66.3 34.5 215 395-617 422-640 (791)
301 3a9g_A Putative uncharacterize 97.7 0.016 5.4E-07 62.8 27.5 229 799-1046 29-330 (354)
302 3amr_A 3-phytase; beta-propell 97.6 0.014 4.6E-07 61.4 24.8 191 457-658 42-269 (355)
303 2p9w_A MAL S 1 allergenic prot 97.6 0.0081 2.8E-07 62.5 22.9 204 798-1005 12-265 (334)
304 2xzh_A Clathrin heavy chain 1; 97.6 0.076 2.6E-06 54.5 31.2 237 340-611 72-334 (365)
305 2xzh_A Clathrin heavy chain 1; 97.6 0.087 3E-06 54.1 33.0 232 802-1059 70-333 (365)
306 1n7d_A LDL receptor, low-densi 97.6 0.00036 1.2E-08 83.3 13.4 205 799-1013 406-622 (699)
307 2g8s_A Glucose/sorbosone dehyd 97.5 0.022 7.4E-07 61.7 25.8 239 800-1056 19-350 (353)
308 1bpo_A Protein (clathrin); cla 97.5 0.14 4.7E-06 54.8 30.2 238 339-611 70-333 (494)
309 1n7d_A LDL receptor, low-densi 97.5 0.00059 2E-08 81.5 13.5 234 416-661 384-622 (699)
310 2xtc_A F-box-like/WD repeat-co 97.3 0.00014 4.9E-09 57.7 4.0 35 1-35 1-35 (90)
311 1bpo_A Protein (clathrin); cla 97.3 0.24 8.1E-06 53.0 34.3 233 802-1060 69-333 (494)
312 3pbp_A Nucleoporin NUP82; beta 97.3 0.013 4.5E-07 62.6 19.0 111 802-914 24-159 (452)
313 2p9w_A MAL S 1 allergenic prot 97.2 0.028 9.5E-07 58.5 20.0 166 882-1057 12-214 (334)
314 2ism_A Putative oxidoreductase 97.2 0.036 1.2E-06 59.9 22.1 230 397-642 31-334 (352)
315 3das_A Putative oxidoreductase 97.0 0.19 6.6E-06 53.3 25.2 233 798-1046 31-326 (347)
316 3ii7_A Kelch-like protein 7; p 97.0 0.051 1.7E-06 57.5 21.0 231 811-1068 13-280 (306)
317 3sre_A PON1, serum paraoxonase 96.9 0.23 7.7E-06 53.0 25.0 180 860-1055 81-295 (355)
318 2vpj_A Kelch-like protein 12; 96.9 0.044 1.5E-06 57.9 19.8 235 407-655 14-280 (301)
319 2g8s_A Glucose/sorbosone dehyd 96.9 0.28 9.5E-06 52.9 25.9 237 397-641 18-341 (353)
320 3a9g_A Putative uncharacterize 96.9 0.33 1.1E-05 52.3 26.3 233 396-641 28-330 (354)
321 2vpj_A Kelch-like protein 12; 96.9 0.051 1.7E-06 57.4 19.6 196 407-613 62-282 (301)
322 3ii7_A Kelch-like protein 7; p 96.8 0.17 5.8E-06 53.4 23.5 236 348-614 13-277 (306)
323 2xn4_A Kelch-like protein 2; s 96.8 0.13 4.3E-06 54.3 22.4 232 809-1067 15-283 (302)
324 1cru_A Protein (soluble quinop 96.8 0.38 1.3E-05 53.7 26.7 104 799-902 27-163 (454)
325 2xn4_A Kelch-like protein 2; s 96.7 0.11 3.8E-06 54.7 21.3 234 408-655 16-278 (302)
326 4asc_A Kelch repeat and BTB do 96.7 0.15 5.2E-06 54.1 22.0 229 818-1071 12-288 (315)
327 1tl2_A L10, protein (tachylect 96.7 0.019 6.5E-07 55.3 12.4 185 851-1052 3-204 (236)
328 2be1_A Serine/threonine-protei 96.6 0.016 5.4E-07 61.2 13.2 201 853-1063 11-236 (339)
329 3sre_A PON1, serum paraoxonase 96.6 0.98 3.4E-05 48.1 30.5 207 398-617 51-308 (355)
330 3pbp_A Nucleoporin NUP82; beta 96.5 0.16 5.4E-06 54.4 19.5 165 892-1065 30-218 (452)
331 1zgk_A Kelch-like ECH-associat 96.5 0.13 4.5E-06 54.4 19.5 233 807-1067 22-294 (308)
332 4asc_A Kelch repeat and BTB do 96.4 0.19 6.5E-06 53.3 20.0 230 411-655 8-279 (315)
333 1xi4_A Clathrin heavy chain; a 96.3 0.17 6E-06 62.6 21.0 233 803-1059 70-332 (1630)
334 1tl2_A L10, protein (tachylect 96.2 0.068 2.3E-06 51.5 13.0 144 840-996 41-201 (236)
335 2uvk_A YJHT; unknown function, 96.1 0.34 1.1E-05 52.5 20.5 237 808-1070 18-352 (357)
336 3das_A Putative oxidoreductase 96.0 2 7E-05 45.4 29.6 100 800-901 203-326 (347)
337 1zgk_A Kelch-like ECH-associat 96.0 0.21 7.1E-06 52.8 17.8 234 406-655 23-289 (308)
338 2woz_A Kelch repeat and BTB do 95.7 1.1 3.9E-05 47.2 22.5 237 349-615 18-293 (318)
339 2woz_A Kelch repeat and BTB do 95.7 0.78 2.7E-05 48.5 21.0 224 419-655 25-289 (318)
340 1xi4_A Clathrin heavy chain; a 95.6 0.48 1.6E-05 58.8 20.1 236 341-611 72-333 (1630)
341 1cru_A Protein (soluble quinop 95.5 0.96 3.3E-05 50.4 21.3 110 883-994 27-163 (454)
342 1uuj_A Platelet-activating fac 95.5 0.011 3.8E-07 46.6 3.7 55 5-59 10-66 (88)
343 3sbq_A Nitrous-oxide reductase 95.4 4.2 0.00014 45.1 27.6 114 799-915 323-480 (638)
344 2uvk_A YJHT; unknown function, 95.1 1.7 5.9E-05 46.7 21.8 192 809-1013 65-350 (357)
345 3sbq_A Nitrous-oxide reductase 94.7 1.7 5.8E-05 48.2 19.2 195 808-1006 140-409 (638)
346 2zwa_A Leucine carboxyl methyl 94.4 3 0.0001 49.5 22.6 196 808-1009 396-639 (695)
347 2be1_A Serine/threonine-protei 94.0 0.17 5.7E-06 53.5 9.4 193 457-658 12-236 (339)
348 3s25_A Hypothetical 7-bladed b 93.8 7.2 0.00025 40.4 28.2 168 450-643 22-204 (302)
349 3s25_A Hypothetical 7-bladed b 93.4 8.3 0.00028 40.0 24.4 182 339-566 57-257 (302)
350 2j4b_A TAF5, transcription ini 92.7 0.11 3.6E-06 46.4 4.5 81 68-150 30-116 (138)
351 3b7f_A Glycosyl hydrolase, BNR 92.6 14 0.00047 40.2 27.5 260 798-1066 54-378 (394)
352 2nxp_A Transcription initiatio 92.0 0.18 6.2E-06 46.2 5.4 62 72-133 52-113 (156)
353 2wg3_C Hedgehog-interacting pr 91.5 20 0.00068 39.7 26.7 56 397-452 14-79 (463)
354 2wg3_C Hedgehog-interacting pr 90.6 24 0.00081 39.1 29.8 106 799-904 14-160 (463)
355 3q6k_A 43.2 kDa salivary prote 90.6 11 0.00039 40.1 18.2 171 820-992 124-341 (381)
356 3q6k_A 43.2 kDa salivary prote 90.5 15 0.0005 39.2 19.1 171 466-640 124-341 (381)
357 3qhy_B Beta-lactamase inhibito 89.9 19 0.00065 36.8 19.4 183 800-1005 64-246 (282)
358 4hvt_A Ritya.17583.B, post-pro 89.8 37 0.0013 40.0 27.5 244 338-608 132-429 (711)
359 2j49_A Transcription initiatio 89.7 0.091 3.1E-06 47.4 1.1 81 67-149 31-117 (148)
360 3qhy_B Beta-lactamase inhibito 89.2 21 0.00073 36.4 19.8 222 336-609 25-246 (282)
361 2zwa_A Leucine carboxyl methyl 88.9 15 0.0005 43.5 19.7 199 451-655 396-637 (695)
362 3b7f_A Glycosyl hydrolase, BNR 85.4 44 0.0015 36.0 21.9 205 852-1066 22-268 (394)
363 4gq2_M Nucleoporin NUP120; bet 80.4 5.5 0.00019 49.0 10.8 40 975-1014 236-275 (950)
364 3uc1_A DNA gyrase subunit A; D 75.1 83 0.0028 32.7 26.9 159 798-963 94-280 (327)
365 3uc1_A DNA gyrase subunit A; D 74.2 87 0.003 32.5 24.9 201 800-1006 43-280 (327)
366 3no0_A DNA gyrase subunit A; D 73.2 82 0.0028 31.8 20.2 194 803-1006 29-247 (276)
367 3no0_A DNA gyrase subunit A; D 72.5 85 0.0029 31.7 20.2 113 797-913 66-196 (276)
368 4hvt_A Ritya.17583.B, post-pro 71.1 1.6E+02 0.0056 34.4 27.2 180 819-1008 216-432 (711)
369 1wp5_A Topoisomerase IV; broke 70.2 1.1E+02 0.0036 31.8 24.1 239 809-1058 4-277 (323)
370 1suu_A DNA gyrase subunit A; t 63.3 1.4E+02 0.0048 30.7 26.0 191 809-1007 7-233 (312)
371 4a9v_A PHOX; hydrolase, beta-p 62.8 22 0.00074 40.0 9.0 60 934-993 477-549 (592)
372 2zux_A YESW protein; beta-prop 58.5 2.3E+02 0.0079 31.6 25.2 195 444-659 328-538 (591)
373 3zwu_A Alkaline phosphatase PH 58.3 21 0.00071 40.7 8.1 59 935-993 478-549 (592)
374 4gq2_M Nucleoporin NUP120; bet 57.7 1.2E+02 0.0041 37.2 15.5 37 884-920 237-273 (950)
375 2k9m_A RNA polymerase sigma fa 57.5 15 0.0005 32.2 5.3 91 2-104 18-122 (130)
376 1zi0_A DNA gyrase subunit A; b 54.4 1.9E+02 0.0066 29.5 27.1 151 745-913 108-277 (307)
377 3bu8_A Telomeric repeat-bindin 53.5 45 0.0015 31.5 7.9 100 69-189 109-209 (235)
378 4fhn_B Nucleoporin NUP120; pro 50.6 3.6 0.00012 52.0 0.4 40 976-1015 239-278 (1139)
379 2cn3_A Xyloglucanase, beta-1,4 49.9 3.8E+02 0.013 31.5 35.9 61 580-641 24-91 (737)
380 3f7f_A Nucleoporin NUP120; nuc 49.6 38 0.0013 39.2 8.5 32 983-1014 228-259 (729)
381 1suu_A DNA gyrase subunit A; t 49.6 2.3E+02 0.008 29.0 29.8 198 744-962 6-231 (312)
382 2cn3_A Xyloglucanase, beta-1,4 48.5 4E+02 0.014 31.4 21.8 218 841-1069 24-292 (737)
383 3mkr_A Coatomer subunit epsilo 46.2 66 0.0023 32.7 9.3 54 6-59 65-126 (291)
384 2d68_A FOP, FGFR1OP; alpha hel 45.8 21 0.00071 28.0 3.8 29 7-35 20-48 (82)
385 1wp5_A Topoisomerase IV; broke 45.5 2.7E+02 0.0094 28.7 25.3 198 802-1005 43-277 (323)
386 2zux_A YESW protein; beta-prop 43.4 3.9E+02 0.013 29.9 25.5 168 439-619 176-410 (591)
387 3zwu_A Alkaline phosphatase PH 43.0 76 0.0026 36.1 9.6 64 531-596 477-548 (592)
388 4gco_A Protein STI-1; structur 42.2 1.2E+02 0.004 25.8 9.0 97 16-119 24-125 (126)
389 3l6v_A GYRA, DNA gyrase subuni 42.0 3.3E+02 0.011 28.7 26.1 193 808-1008 5-268 (370)
390 3f7f_A Nucleoporin NUP120; nuc 40.7 4.9E+02 0.017 30.2 17.3 35 842-879 224-258 (729)
391 3mez_B Mannose-specific lectin 37.9 1.2E+02 0.0041 25.5 7.9 90 943-1067 23-113 (113)
392 4asv_A Small glutamine-rich te 37.8 18 0.00062 28.7 2.4 19 1-19 15-33 (92)
393 4a9v_A PHOX; hydrolase, beta-p 36.7 1.5E+02 0.005 33.4 10.2 65 531-597 477-549 (592)
394 3l6v_A GYRA, DNA gyrase subuni 36.4 4E+02 0.014 28.0 27.5 64 587-651 4-74 (370)
395 2wpv_A GET4, UPF0363 protein Y 36.1 1.3E+02 0.0045 30.8 9.2 23 38-60 17-39 (312)
396 1vk8_A Hypothetical protein TM 36.0 3.8 0.00013 34.1 -1.8 36 24-60 37-72 (106)
397 1zi0_A DNA gyrase subunit A; b 34.7 3.8E+02 0.013 27.3 30.2 159 798-963 94-278 (307)
398 3lpz_A GET4 (YOR164C homolog); 33.8 1.4E+02 0.0048 30.9 9.0 23 38-60 16-41 (336)
399 4fhn_B Nucleoporin NUP120; pro 33.6 2.1E+02 0.0074 35.8 12.7 38 443-482 239-276 (1139)
400 1sqj_A OXG-RCBH, oligoxylogluc 33.1 6.8E+02 0.023 29.6 22.5 163 839-1007 14-202 (789)
401 3bqo_A Telomeric repeat-bindin 30.2 1.1E+02 0.0039 28.4 6.6 71 51-123 95-165 (211)
402 2lni_A Stress-induced-phosphop 27.3 2.6E+02 0.0089 23.0 8.9 88 8-101 19-111 (133)
403 2vgx_A Chaperone SYCD; alterna 26.8 2.1E+02 0.0073 25.0 8.3 16 45-60 66-81 (148)
404 2zuy_A YESX protein; beta-prop 26.5 7.3E+02 0.025 27.9 24.9 42 578-619 367-414 (620)
405 4gof_A Small glutamine-rich te 25.4 34 0.0012 24.1 1.8 15 5-19 2-16 (52)
406 2k9l_A RNA polymerase sigma fa 25.1 57 0.002 25.2 3.3 36 2-37 27-63 (76)
407 1kdl_A YOPD protein; yersinia, 25.0 40 0.0014 19.2 1.6 16 4-19 3-18 (26)
408 2kck_A TPR repeat; tetratricop 24.7 88 0.003 25.1 5.0 55 44-102 50-105 (112)
409 4ga2_A E3 SUMO-protein ligase 24.2 2.1E+02 0.007 25.1 7.7 94 21-121 13-111 (150)
410 3mkr_A Coatomer subunit epsilo 24.2 2.9E+02 0.01 27.7 9.8 51 10-60 38-91 (291)
411 3u4t_A TPR repeat-containing p 23.7 1.9E+02 0.0066 28.2 8.3 109 7-119 4-118 (272)
412 2ibo_A Hypothetical protein SP 23.2 7.2 0.00025 32.4 -2.3 35 25-60 25-59 (104)
413 1lxj_A YBL001C, hypothetical 1 22.3 7.5 0.00026 32.4 -2.4 38 22-60 26-63 (104)
414 1sqj_A OXG-RCBH, oligoxylogluc 22.3 1E+03 0.035 28.1 27.6 263 798-1067 14-340 (789)
415 1yqh_A DUF77, IG hypothetical 22.2 8.7 0.0003 32.3 -2.0 36 24-60 29-64 (109)
416 2xz2_A CSTF-50, isoform B; RNA 20.7 1.2E+02 0.0042 22.3 3.9 31 4-34 15-45 (66)
417 2xcb_A PCRH, regulatory protei 20.6 3E+02 0.01 23.5 8.0 14 86-99 64-77 (142)
418 1oyi_A Double-stranded RNA-bin 20.2 66 0.0022 25.3 2.7 30 6-37 16-45 (82)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.2e-69 Score=646.86 Aligned_cols=567 Identities=22% Similarity=0.341 Sum_probs=484.6
Q ss_pred eeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC
Q 001386 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1088)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~ 406 (1088)
.+.|+||++.|++++|||||+ +||+|+.|++|+|||. +++++.+ +.+|.+.|.+++|+|
T Consensus 9 ~~~L~GH~~~V~~~a~spdg~-~las~~~d~~v~iWd~-~~~~~~~-------------------l~gh~~~V~~l~fsp 67 (577)
T 2ymu_A 9 RNRLEAHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVWGVAFSP 67 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEEE-------------------EECCSSCEEEEEECT
T ss_pred eeEECCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEEE-------------------EeCCCCCEEEEEECC
Confidence 366999999999999999999 6899999999999995 6766654 788999999999999
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCc
Q 001386 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1088)
Q Consensus 407 dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1088)
||++||+++.|++|+|||+. ++.+ ..+.+|...|.+++|+|+++ ++++++.|+.+++|+.. ........+|..
T Consensus 68 dg~~las~~~d~~i~vWd~~-~~~~---~~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~ 140 (577)
T 2ymu_A 68 DGQTIASASDDKTVKLWNRN-GQLL---QTLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHSS 140 (577)
T ss_dssp TSSEEEEEETTSCEEEEETT-SCEE---EEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCSS
T ss_pred CCCEEEEEeCCCEEEEEECC-CCEE---EEEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCCC
Confidence 99999999999999999975 4433 37889999999999999999 89999999999999954 455667788999
Q ss_pred cEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCc
Q 001386 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1088)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1088)
.+..+.+. +++..+++++.++.+++|+.. .........+...+.+++++|+++++++++. ++.|++||. +++
T Consensus 141 ~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~~ 212 (577)
T 2ymu_A 141 SVWGVAFS--PDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQ 212 (577)
T ss_dssp CEEEEEEC--TTSSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TSC
T ss_pred ceeeeeee--cCCccceecccccceeccccc-eeeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CCc
Confidence 99999884 466789999999999999854 3445566678889999999999999999975 556999995 677
Q ss_pred eeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcE
Q 001386 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 646 (1088)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 646 (1088)
.+..+.+|. ..|.+++|+|+++++++++.|+.|++||. +++.+..+..+. ..|.+++|+|+++.+++++.|+.|
T Consensus 213 ~~~~~~~~~---~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~--~~v~~v~~~~d~~~l~~~~~d~~i 286 (577)
T 2ymu_A 213 LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS--SSVNGVAFRPDGQTIASASDDKTV 286 (577)
T ss_dssp EEEEEECCS---SCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEEEEecCC---CCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCC--CCEEEEEEcCCCCEEEEEeCCCEE
Confidence 888888887 89999999999999999999999999996 567777777654 468999999999999999999999
Q ss_pred EEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceee
Q 001386 647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 726 (1088)
Q Consensus 647 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~ 726 (1088)
++|+... +....+
T Consensus 287 ~~w~~~~-~~~~~~------------------------------------------------------------------ 299 (577)
T 2ymu_A 287 KLWNRNG-QLLQTL------------------------------------------------------------------ 299 (577)
T ss_dssp EEEETTS-CEEEEE------------------------------------------------------------------
T ss_pred EEEeCCC-cEEEEE------------------------------------------------------------------
Confidence 9999642 221111
Q ss_pred ecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEE
Q 001386 727 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 806 (1088)
Q Consensus 727 ~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 806 (1088)
.+|...|.+++|+|+++.+++++.|+.+++|+..... +.. +. +|...+.+++|
T Consensus 300 ----~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-------------------~~~--~~--~~~~~v~~~~~ 352 (577)
T 2ymu_A 300 ----TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-------------------LQT--LT--GHSSSVWGVAF 352 (577)
T ss_dssp ----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-------------------EEE--EC--CCSSCEEEEEE
T ss_pred ----ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-------------------eEE--Ee--CCCCCEEEEEE
Confidence 1266778899999999999999999999999864321 111 11 47889999999
Q ss_pred ecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCe
Q 001386 807 SKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV 885 (1088)
Q Consensus 807 s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V 885 (1088)
+|+++++++++ ++.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|
T Consensus 353 s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v 429 (577)
T 2ymu_A 353 SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 429 (577)
T ss_dssp CTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCE
T ss_pred CCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCe
Confidence 99999999998 899999995 5788889999999999999999 8999999999999999995 578889999999999
Q ss_pred eEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcce
Q 001386 886 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELT 964 (1088)
Q Consensus 886 ~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~ 964 (1088)
++++|+||+++|++++.|++|++||.... .+....+|.. .|.+++|+||+++|++ +.|+.|++||. +++
T Consensus 430 ~~~~~s~d~~~l~~~~~d~~v~~w~~~~~------~~~~~~~~~~---~v~~~~~spd~~~las~~~d~~i~iw~~-~~~ 499 (577)
T 2ymu_A 430 WGVAFSPDDQTIASASDDKTVKLWNRNGQ------LLQTLTGHSS---SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQ 499 (577)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTSC------EEEEEECCSS---CEEEEEECTTSCEEEEEETTSEEEEEET-TSC
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEECCCC------EEEEEcCCCC---CEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCC
Confidence 99999999999999999999999997652 2333344443 7999999999999999 57899999995 577
Q ss_pred eeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEE
Q 001386 965 CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV 1044 (1088)
Q Consensus 965 ~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~ 1044 (1088)
++.. +.+|...|++++|||||++|++++.||.|++||. +++.+..+..+ .-...+++|+| |+++|++
T Consensus 500 ~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h----------~~~v~~~~fs~-dg~~l~s 566 (577)
T 2ymu_A 500 LLQT-LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH----------SSSVWGVAFSP-DGQTIAS 566 (577)
T ss_dssp EEEE-EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECC----------SSCEEEEEECT-TSSCEEE
T ss_pred EEEE-EeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCC----------CCCEEEEEEcC-CCCEEEE
Confidence 7776 5589999999999999999999999999999996 57777666511 12346799999 8999999
Q ss_pred EeCCCcEEEEe
Q 001386 1045 GLTNGEVYVIE 1055 (1088)
Q Consensus 1045 ~~~dg~v~~w~ 1055 (1088)
++.||+|++||
T Consensus 567 ~~~D~~i~~Wd 577 (577)
T 2ymu_A 567 ASSDKTVKLWN 577 (577)
T ss_dssp EETTSCEEEEC
T ss_pred EeCCCEEEEeC
Confidence 99999999997
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2e-66 Score=624.72 Aligned_cols=576 Identities=15% Similarity=0.180 Sum_probs=476.6
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEE
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 411 (1088)
.+++.+.+++|||||+ +||+++ +++|+|||+.+++.... +.+|...|++++|||||++|
T Consensus 16 ~~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~~~~~~~-------------------~~~h~~~v~~~~~spdg~~l 74 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYC 74 (611)
T ss_dssp CCTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred cccCceeEEeeCCCCC-EEEeCC-CCEEEEecCCCcccCeE-------------------ecCCCCceEEEEECCCCcEE
Confidence 4567889999999999 577876 57999999998876654 78899999999999999999
Q ss_pred EEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCC----CcEEEEeCCCCceeEEeccCCcc
Q 001386 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFEGHGAP 487 (1088)
Q Consensus 412 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d----~~i~vwd~~~~~~~~~~~~~~~~ 487 (1088)
|+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+||++ .+++++.+ +.|++|| +++.+..+.+|...
T Consensus 75 asg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~ 149 (611)
T 1nr0_A 75 ASGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARA 149 (611)
T ss_dssp EEEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSC
T ss_pred EEEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCC
Confidence 999999999999998665432 236789999999999999999 67777754 3566776 67788889999999
Q ss_pred EEEEeeeeeCCce-EEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCc
Q 001386 488 VYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1088)
Q Consensus 488 v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1088)
|.+++|+| ++. .|++++.|++|++||..+.+....+..|...|.+++|+|+|++|++++. ++.|++||..+++
T Consensus 150 v~~v~f~p--~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~ 223 (611)
T 1nr0_A 150 MNSVDFKP--SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGT 223 (611)
T ss_dssp EEEEEECS--SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCC
T ss_pred ceEEEECC--CCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCc
Confidence 99999965 444 6999999999999999888888889999999999999999999999986 5569999999999
Q ss_pred eeEEEe-------ccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCC-CCCceEEEecCCCEEE
Q 001386 567 IKRTYQ-------GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRICFNKNGTLLA 638 (1088)
Q Consensus 567 ~~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~ 638 (1088)
.+..+. +|. +.|.+++|+|++++|++++.|++|++||+.+++.+..+..+... .....+.| ++..++
T Consensus 224 ~~~~~~~~~~~~~~h~---~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ 298 (611)
T 1nr0_A 224 KTGVFEDDSLKNVAHS---GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALV 298 (611)
T ss_dssp EEEECBCTTSSSCSSS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEE
T ss_pred EeeeeccccccccccC---CCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEE
Confidence 888874 455 89999999999999999999999999999999999888754221 12234444 788999
Q ss_pred EEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceecccccc
Q 001386 639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 718 (1088)
Q Consensus 639 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 718 (1088)
+++.|+.+++|+...+.....+.+|...|.+++++ |+++++++++.|++|++|++...
T Consensus 299 s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s----------------------pdg~~l~s~s~D~~v~~Wd~~~~ 356 (611)
T 1nr0_A 299 SISANGFINFVNPELGSIDQVRYGHNKAITALSSS----------------------ADGKTLFSADAEGHINSWDISTG 356 (611)
T ss_dssp EEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETTSCEEEEETTTC
T ss_pred EEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe----------------------CCCCEEEEEeCCCcEEEEECCCC
Confidence 99999999999999888878888999999999997 67889999999999999998643
Q ss_pred CCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCC
Q 001386 719 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQ 798 (1088)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1088)
.. ......+|...|.+++|++++ .+++++.|+.+++|+......... . ..... ..
T Consensus 357 ~~-----~~~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~-------------~-~~~~~-----~~ 411 (611)
T 1nr0_A 357 IS-----NRVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSS-------------K-AVANK-----LS 411 (611)
T ss_dssp CE-----EECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTT-------------S-CCEEE-----CS
T ss_pred ce-----eeecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCcccccc-------------c-eeeee-----cC
Confidence 21 112224588899999999776 588999999999998765432100 0 00001 23
Q ss_pred CCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee--ee
Q 001386 799 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--IS 876 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~--~~ 876 (1088)
..+.+++++|+|+.++++.++.+++|+ .++ +..+. |...+.+++|+| |+++||+|+.|++|++||+.++.. +.
T Consensus 412 ~~~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~ 486 (611)
T 1nr0_A 412 SQPLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVK 486 (611)
T ss_dssp SCEEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEE
T ss_pred CCCcEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeee
Confidence 456789999999988888899999999 344 55554 778899999999 899999999999999999987654 33
Q ss_pred eeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCC-CceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCe
Q 001386 877 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG-WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETH 954 (1088)
Q Consensus 877 ~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~ 954 (1088)
. .+|...|++++|||||++|++++.|++|++|++.+ ++... .....+|.. .|.+++|+|||++||+ +.|++
T Consensus 487 ~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~---~~~~~~H~~---~V~~v~fspdg~~lasgs~D~~ 559 (611)
T 1nr0_A 487 T-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH---TNSWTFHTA---KVACVSWSPDNVRLATGSLDNS 559 (611)
T ss_dssp E-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC---CCCCCCCSS---CEEEEEECTTSSEEEEEETTSC
T ss_pred c-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceee---eeeeeeccc---ceeEEEECCCCCEEEEEECCCc
Confidence 4 67999999999999999999999999999999987 33211 001223443 7999999999999999 57899
Q ss_pred EEEEEcCcceeee-eeecCC-CcCEEEEEEeeCCCEEEEEeCCCcEEEEEcC
Q 001386 955 LAIYEAEELTCLK-QWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1004 (1088)
Q Consensus 955 i~vwd~~~~~~~~-~~~~~h-~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~ 1004 (1088)
|++||+.++.... ....+| ...|.+++|+||++ |++++.|++|++|++.
T Consensus 560 v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 560 VIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred EEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 9999999876333 456789 89999999999998 9999999999999973
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.8e-63 Score=599.19 Aligned_cols=556 Identities=22% Similarity=0.346 Sum_probs=472.3
Q ss_pred CcCCCCCCCchhhhcccccCCcccCCCchhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeece
Q 001386 296 NIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNF 375 (1088)
Q Consensus 296 ~~~~fsP~~s~~~~~~~~~~~~~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~ 375 (1088)
.++.|+|++.++.--- ......+++....++++|.+|++.|++++|||||+ +||+++.|++|+|||+ +++.+..
T Consensus 20 ~~~a~spdg~~las~~-~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~-~las~~~d~~i~vWd~-~~~~~~~--- 93 (577)
T 2ymu_A 20 RGVAFSPDGQTIASAS-DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT--- 93 (577)
T ss_dssp EEEEECTTSSCEEEEE-TTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEET-TSCEEEE---
T ss_pred EEEEECCCCCEEEEEe-CCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEEE---
Confidence 3567889888765432 12233455667788999999999999999999999 6899999999999996 5665544
Q ss_pred eeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCc
Q 001386 376 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ 455 (1088)
Q Consensus 376 ~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~ 455 (1088)
+.+|...|.+++|+||+++|++++.|+.+++|+..... .....+|...|..+.|+|++.
T Consensus 94 ----------------~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~- 152 (577)
T 2ymu_A 94 ----------------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL----LQTLTGHSSSVWGVAFSPDGQ- 152 (577)
T ss_dssp ----------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCE----EEEECCCSSCEEEEEECTTSS-
T ss_pred ----------------EECCCCCEEEEEECCCCCEEEEEcCCCceeecccccce----eeeccCCCCceeeeeeecCCc-
Confidence 77899999999999999999999999999999987643 235778999999999999999
Q ss_pred EEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEE
Q 001386 456 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1088)
Q Consensus 456 l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 535 (1088)
.+++++.++.+++|+ ..+........|...|.++.+ .+++.++++++.||.|++||. +.+....+..+...|.++
T Consensus 153 -~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~ 227 (577)
T 2ymu_A 153 -TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAF--SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGV 227 (577)
T ss_dssp -CEEEEETTSEEEEEC-TTSCEEEEEECCSSCEEEEEE--CTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEE
T ss_pred -cceecccccceeccc-cceeeeeeccCCCcceeeeee--cCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEE
Confidence 788999999999998 455666777889999999988 457789999999999999995 456667788899999999
Q ss_pred EEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEE
Q 001386 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615 (1088)
Q Consensus 536 ~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~ 615 (1088)
+|+|++++|++++. ++.|++||. +++.+..+.+|. ..|.+++|+|+++.+++++.|+.|++|+. +++.+..
T Consensus 228 ~~s~dg~~l~~~~~----d~~i~~w~~-~~~~~~~~~~~~---~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~ 298 (577)
T 2ymu_A 228 AFSPDGQTIASASD----DKTVKLWNR-NGQLLQTLTGHS---SSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQT 298 (577)
T ss_dssp EECTTSSCEEEEET----TSCEEEECT-TSCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEE
T ss_pred EECCCCCEEEEEeC----CCEEEEEeC-CCCEEEEEecCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEE
Confidence 99999999999876 456999995 567788888887 89999999999999999999999999996 4677777
Q ss_pred EeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCC
Q 001386 616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 695 (1088)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 695 (1088)
+..|. ..|.+++|+|+++++++++.|+.|++|+..... +..+
T Consensus 299 ~~~h~--~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-~~~~----------------------------------- 340 (577)
T 2ymu_A 299 LTGHS--SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-LQTL----------------------------------- 340 (577)
T ss_dssp ECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-EEEE-----------------------------------
T ss_pred EecCC--CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-eEEE-----------------------------------
Confidence 77654 468999999999999999999999999976321 1111
Q ss_pred CCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCC
Q 001386 696 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVP 775 (1088)
Q Consensus 696 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~ 775 (1088)
.+|...+.+++|+|+|+.+++++.+|.+++|+...
T Consensus 341 -----------------------------------~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~---------- 375 (577)
T 2ymu_A 341 -----------------------------------TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---------- 375 (577)
T ss_dssp -----------------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC----------
T ss_pred -----------------------------------eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC----------
Confidence 12566788999999999999999999999998432
Q ss_pred CcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcE
Q 001386 776 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNV 854 (1088)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~ 854 (1088)
..+.. +. +|...|.+++|+||+++|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++
T Consensus 376 ---------~~~~~--~~--~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~ 440 (577)
T 2ymu_A 376 ---------QLLQT--LT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQT 440 (577)
T ss_dssp ---------CEEEE--EE--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSE
T ss_pred ---------CEEEE--ec--CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCE
Confidence 11222 11 3888999999999999999998 899999995 5788889999999999999999 8999
Q ss_pred EEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCC
Q 001386 855 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS 934 (1088)
Q Consensus 855 lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1088)
|++++.|+.|++||. +++.+..+.+|...|.+++|+||+++|++++.|++|++||... + +++.+.+|.. .
T Consensus 441 l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~-----~~~~~~~h~~---~ 510 (577)
T 2ymu_A 441 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHSS---S 510 (577)
T ss_dssp EEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS-C-----EEEEEECCSS---C
T ss_pred EEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-C-----EEEEEeCCCC---C
Confidence 999999999999996 5778889999999999999999999999999999999999754 2 3444455554 7
Q ss_pred eEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEE
Q 001386 935 ETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1002 (1088)
Q Consensus 935 v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd 1002 (1088)
|.+++|+|||++||+ +.|+.|++||. +++++.. +.+|.+.|++++|+|||++|++++.|++|++||
T Consensus 511 v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~-~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 511 VRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT-LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEE-EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEE-EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999999999999999 57899999996 5777776 558999999999999999999999999999997
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.5e-65 Score=668.27 Aligned_cols=620 Identities=14% Similarity=0.178 Sum_probs=513.4
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
....++.+|.+.|++++|||||+ ++|+|+.||+|+|||+.+++.+.. +.+|...|.+++|
T Consensus 606 ~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~ 665 (1249)
T 3sfz_A 606 LSRLVVRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAF 665 (1249)
T ss_dssp CCSEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEE
T ss_pred cceEEEecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEE
Confidence 34456789999999999999999 689999999999999999987765 7789999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccC
Q 001386 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 484 (1088)
+|||++||+++.|+.|++||+.+++.+. .+.+|...|.+++|+|++...++++++.|+.|++||+.+++++..+.+|
T Consensus 666 s~~~~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h 742 (1249)
T 3sfz_A 666 SSDDSYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH 742 (1249)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCC
T ss_pred ecCCCEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCC
Confidence 9999999999999999999999997655 6789999999999999765558999999999999999999999999999
Q ss_pred CccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCC-------------CCceEEEEEccCCCEEEEEeeCC
Q 001386 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------------GLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
...|.+++|++ ++.++++++.||.|++||+.+......+... ...+.+++|+|+|+.+++++
T Consensus 743 ~~~v~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--- 817 (1249)
T 3sfz_A 743 TNSVNHCRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA--- 817 (1249)
T ss_dssp SSCEEEEEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE---
T ss_pred CCCEEEEEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc---
Confidence 99999999955 6779999999999999999887765544321 23678899999999999987
Q ss_pred CCceeEEEEeCCCCceeEEEe-ccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEE
Q 001386 552 EGESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1088)
++.+.+||..++.....+. +|. ..+.+++|+|+++++++++.||.|++||+.++..+..+..|.. .|.+++|
T Consensus 818 --~~~v~~~d~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~--~v~~v~~ 890 (1249)
T 3sfz_A 818 --KNKVLLFDIHTSGLLAEIHTGHH---STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS--WVHGVMF 890 (1249)
T ss_dssp --TTEEEEEETTTCCEEEEEECSSS---SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS--CEEEEEE
T ss_pred --CCcEEEEEecCCCceeEEcCCCC---CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCcc--ceEEEEE
Confidence 3459999999998888776 455 8999999999999999999999999999999999999886644 6999999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccc
Q 001386 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 710 (1088)
Q Consensus 631 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 710 (1088)
+|+++++++++.||.|++|++.+......... .......+. +++..++.....+.+
T Consensus 891 spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~--~~~~~~~~~----------------------~~~~~~~~~~~~~~~ 946 (1249)
T 3sfz_A 891 SPDGSSFLTASDDQTIRVWETKKVCKNSAIVL--KQEIDVVFQ----------------------ENETMVLAVDNIRGL 946 (1249)
T ss_dssp CTTSSEEEEEETTSCEEEEEHHHHHSCCSSSE--EEEEEEEEE----------------------TTEEEEEEEESSSSE
T ss_pred CCCCCEEEEEeCCCeEEEEEccccceeeeecc--cceeeEEEc----------------------CCCcEEEEecCCcce
Confidence 99999999999999999999764322211110 001111111 223333344444445
Q ss_pred eeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceee
Q 001386 711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVN 790 (1088)
Q Consensus 711 ~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1088)
.++..... ... ......+.+++++|+++++++++.+|.+++|++..+.. ...
T Consensus 947 ~~~~~~~~---~~~------~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~------------------~~~- 998 (1249)
T 3sfz_A 947 QLIAGKTG---QID------YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV------------------FSS- 998 (1249)
T ss_dssp EEEEESSC---CEE------EECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSC------------------EEE-
T ss_pred EEEecCcc---eEE------EcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCce------------------eee-
Confidence 55543211 111 11346799999999999999999999999998764432 221
Q ss_pred ccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 001386 791 DTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 869 (1088)
Q Consensus 791 ~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~ 869 (1088)
+ .+|...|.+++|+|+|+++++++ ||.|++||+.+++... +..|...+.+++|+| ++ .+++++.||.|++||+
T Consensus 999 -~--~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~-~l~~~~~dg~v~vwd~ 1072 (1249)
T 3sfz_A 999 -G--VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS-RLLSWSFDGTVKVWNV 1072 (1249)
T ss_dssp -C--CCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-EEEEEESSSEEEEEET
T ss_pred -c--ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CC-cEEEEECCCcEEEEEC
Confidence 1 14889999999999999999997 8999999999988764 557899999999999 55 5778999999999999
Q ss_pred CCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE
Q 001386 870 RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 949 (1088)
Q Consensus 870 ~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~ 949 (1088)
.+++.+..+.+|.+.|.+++|+||+++|++++.||+|++||+.+++ .+....+|.. .|.+++|+|||++|++
T Consensus 1073 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~-----~~~~l~~h~~---~v~~~~~s~dg~~lat 1144 (1249)
T 3sfz_A 1073 ITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS-----PLHELKGHNG---CVRCSAFSLDGILLAT 1144 (1249)
T ss_dssp TTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS-----CSBCCCCCSS---CEEEEEECSSSSEEEE
T ss_pred CCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc-----eeeeeccCCC---cEEEEEECCCCCEEEE
Confidence 9999999999999999999999999999999999999999999854 4445556554 7999999999999999
Q ss_pred -EeCCeEEEEEcCcceeeeee--------ecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCC
Q 001386 950 -VHETHLAIYEAEELTCLKQW--------FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1020 (1088)
Q Consensus 950 -~~d~~i~vwd~~~~~~~~~~--------~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~ 1020 (1088)
+.|+.|++||+.+++.+..+ ..+|.+.|++++|||||++|++++ |.|++||+.+++.+..+..+.
T Consensus 1145 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~~---- 1218 (1249)
T 3sfz_A 1145 GDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNG---- 1218 (1249)
T ss_dssp EETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCCSS----
T ss_pred EeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeeeccC----
Confidence 57899999999999987764 256899999999999999999885 899999999998876554221
Q ss_pred CCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001386 1021 TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1058 (1088)
Q Consensus 1021 ~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~ 1058 (1088)
-...+++|+| |+..|++++.||.|++|++.+
T Consensus 1219 ------~~i~~~~~s~-dg~~l~~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A 1219 ------TNLKKIHVSP-DFRTYVTVDNLGILYILQVLE 1249 (1249)
T ss_dssp ------CCCCCCEECS-SSCCEEEECTTCCEEEECCCC
T ss_pred ------CcccEEEECC-CCCEEEEecCCcEEEEEeecC
Confidence 1234588999 889999999999999999853
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.5e-63 Score=597.77 Aligned_cols=574 Identities=11% Similarity=0.104 Sum_probs=457.0
Q ss_pred cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeC
Q 001386 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1088)
Q Consensus 393 ~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~ 472 (1088)
..+.+.+.+++|+|||++||+++ ++.|++||+.+++... .+.+|...|++++|+|||+ +|++|+.|++|+|||+
T Consensus 15 ~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~---~~~~h~~~v~~~~~spdg~--~lasg~~d~~v~lWd~ 88 (611)
T 1nr0_A 15 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTE---IYTEHSHQTTVAKTSPSGY--YCASGDVHGNVRIWDT 88 (611)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEES
T ss_pred CcccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCe---EecCCCCceEEEEECCCCc--EEEEEeCCCCEEEeEC
Confidence 34678889999999999999997 5699999998876554 6889999999999999999 8999999999999999
Q ss_pred CCCc--eeEEeccCCccEEEEeeeeeCCceEEEEEecC----CeEEEEECCCCCceEEecCCCCceEEEEEccCCC-EEE
Q 001386 473 VTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLF 545 (1088)
Q Consensus 473 ~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~ 545 (1088)
.+++ ....+.+|.+.|.+++|+ +++++|++++.+ +.|++|| .+.....+..|...|.+++|+|++. .|+
T Consensus 89 ~~~~~~~~~~~~~~~~~v~~v~fs--~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~ 164 (611)
T 1nr0_A 89 TQTTHILKTTIPVFSGPVKDISWD--SESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRII 164 (611)
T ss_dssp SSTTCCEEEEEECSSSCEEEEEEC--TTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEE
T ss_pred CCCcceeeEeecccCCceEEEEEC--CCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEE
Confidence 7654 456788999999999995 577889988865 4677776 4556667788999999999999997 588
Q ss_pred EEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCC-----C
Q 001386 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----G 620 (1088)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~ 620 (1088)
+++. ++.|++||..+++....+.+|. ..|.+++|+|++++|++++.|++|++||+.+++.+..+... .
T Consensus 165 s~s~----D~~v~lwd~~~~~~~~~l~~H~---~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~ 237 (611)
T 1nr0_A 165 SGSD----DNTVAIFEGPPFKFKSTFGEHT---KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA 237 (611)
T ss_dssp EEET----TSCEEEEETTTBEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCS
T ss_pred EEeC----CCeEEEEECCCCeEeeeecccc---CceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccc
Confidence 8875 5569999999999999999888 89999999999999999999999999999999988887421 2
Q ss_pred CCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccC---cceeeeecCCCcceeccccCCceeecCCCCCC
Q 001386 621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSD---NLRKLSVNPISTVTGAGIANGSVSVNEDPKED 697 (1088)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 697 (1088)
+...|.+++|+|++++|++++.|++|++||+.+++....+..+.. ....+. .+
T Consensus 238 h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~ 293 (611)
T 1nr0_A 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII------------------------WT 293 (611)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE------------------------EC
T ss_pred cCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEE------------------------Ec
Confidence 345799999999999999999999999999998876655543211 111111 24
Q ss_pred CCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCc
Q 001386 698 VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPR 777 (1088)
Q Consensus 698 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~ 777 (1088)
+..+++++.|+.+++|+..... . .. ...+|...|.+++|+|+|++|++++.|+.|++|++..+..
T Consensus 294 ~~~l~s~s~d~~i~~~~~~~~~---~-~~--~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~--------- 358 (611)
T 1nr0_A 294 KQALVSISANGFINFVNPELGS---I-DQ--VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS--------- 358 (611)
T ss_dssp SSCEEEEETTCCEEEEETTTTE---E-EE--EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---------
T ss_pred CCEEEEEeCCCcEEEEeCCCCC---c-ce--EEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce---------
Confidence 6789999999999999975332 1 11 1235889999999999999999999999999999764422
Q ss_pred ccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEE---ecCCCCCeEEEEEcCCCCcE
Q 001386 778 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT---IMPPSPTATSLAFNPHDNNV 854 (1088)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~---~~~~~~~i~~l~~sp~d~~~ 854 (1088)
... + ...|...|.++++++++.++..+.|+.+++|+..++..... .........+++|+| ++++
T Consensus 359 ---------~~~--~-~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~ 425 (611)
T 1nr0_A 359 ---------NRV--F-PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDI 425 (611)
T ss_dssp ---------EEC--S-SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-TSSC
T ss_pred ---------eee--c-ccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-CCcE
Confidence 111 1 12488899999999888655555599999999876543210 011234567899999 7877
Q ss_pred EEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCC
Q 001386 855 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS 934 (1088)
Q Consensus 855 lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1088)
++++ .++.+++|+ .++ +..+. |...+.+++|+|||++||+++.|++|++||+.++.... ... .+|.. .
T Consensus 426 ~~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~~h~~---~ 493 (611)
T 1nr0_A 426 AVAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-IVHPA---E 493 (611)
T ss_dssp EEEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-EECSS---C
T ss_pred EEEE-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-cCCCC---c
Confidence 7776 567899998 344 55555 88899999999999999999999999999998754221 122 23433 7
Q ss_pred eEEEEEcCCCCEEEE-EeCCeEEEEEcCc-ceeeee-eecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEE-
Q 001386 935 ETHIQFHKDQTRFLL-VHETHLAIYEAEE-LTCLKQ-WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC- 1010 (1088)
Q Consensus 935 v~~~~fs~dg~~l~~-~~d~~i~vwd~~~-~~~~~~-~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~- 1010 (1088)
|.+++|+|||++|++ +.|++|++||+.+ +++... ...+|...|.+++|||||++|++|+.|++|++|++.++....
T Consensus 494 v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~ 573 (611)
T 1nr0_A 494 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI 573 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCE
T ss_pred eEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccc
Confidence 999999999999999 5789999999998 666554 344599999999999999999999999999999999876322
Q ss_pred EeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001386 1011 RILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1057 (1088)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~ 1057 (1088)
... ..+. .-...+++|+| |+. |++|+.||+|++|+++
T Consensus 574 ~~~----~~h~----~~~v~~v~fs~-d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 574 IIK----GAHA----MSSVNSVIWLN-ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EET----TSST----TSCEEEEEEEE-TTE-EEEEETTSCEEEEECC
T ss_pred hhh----ccCc----ccCeeEEEEcC-CCE-EEEecCCCCEEEEecc
Confidence 111 0110 12356799999 677 9999999999999983
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.6e-60 Score=578.95 Aligned_cols=559 Identities=11% Similarity=0.158 Sum_probs=484.6
Q ss_pred ccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCC----cceeeeceeeeeeccccccceeeeecCCCCC-eEEEEEC
Q 001386 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG----QKLFIRNFKVWDIGACSMLFKTALVRDPGVS-VNRVVWS 405 (1088)
Q Consensus 331 ~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~-V~~l~~s 405 (1088)
..|.+.|.+++|||||+ +||+++ ++.|+|||+.++ +.... +.+|... |.+++|+
T Consensus 15 ~~~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~~-------------------~~~h~~~~v~~~~~s 73 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVVQ-------------------FTGHGSSVVTTVKFS 73 (615)
T ss_dssp CCCTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEEE-------------------ECTTTTSCEEEEEEC
T ss_pred CCccCceeEEEECCCCC-EEEEec-CCeEEEEECCCCCCccccceE-------------------EecCCCceEEEEEEC
Confidence 36788999999999999 577776 789999999988 65544 7889999 9999999
Q ss_pred C--CCCEEEEEeCCCEEEEEEccCCC-----cccceeEeccCCCCEEEEEecCCCCcEEEEEEeCC----CcEEEEeCCC
Q 001386 406 P--DGSLLGVAYSKHIVQLYAYHGGS-----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVT 474 (1088)
Q Consensus 406 ~--dg~~las~~~dg~i~vwd~~~~~-----~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d----~~i~vwd~~~ 474 (1088)
| |+++||+++.||.|++||+.+++ .......+..|...|.+++|+|+++ ++++++.+ +.|++|| +
T Consensus 74 p~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~ 149 (615)
T 1pgu_A 74 PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--S 149 (615)
T ss_dssp SSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--T
T ss_pred cCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--C
Confidence 9 99999999999999999997651 1123336778999999999999999 78888877 6788887 7
Q ss_pred CceeEEeccCCccEEEEeeeeeCCce-EEEEEecCCeEEEEECCCCCceEEecCCCC---ceEEEEEccC-CCEEEEEee
Q 001386 475 GSRTYSFEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARVDYDAPGL---GCTRMAYSAN-GRRLFSCGT 549 (1088)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~-g~~l~~~~~ 549 (1088)
++.+..+.+|...|.+++|++ ++. .+++++.||.|++||+.+.+....+..+.. .|.+++|+|+ ++++++++.
T Consensus 150 ~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 227 (615)
T 1pgu_A 150 GNSLGEVSGHSQRINACHLKQ--SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS 227 (615)
T ss_dssp CCEEEECCSCSSCEEEEEECS--SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred CCcceeeecCCccEEEEEECC--CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC
Confidence 788899999999999999965 444 899999999999999999888888888888 9999999999 999999976
Q ss_pred CCCCceeEEEEeCCCCceeEEE-e---ccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCC--CC
Q 001386 550 SKEGESFLVEWNESEGAIKRTY-Q---GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LP 623 (1088)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~-~---~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~ 623 (1088)
++.|++||+.+++.+..+ . .|. ..|.+++|+ +++++++++.|+.|++||+.+++.+..+..+.. ..
T Consensus 228 ----dg~i~vwd~~~~~~~~~~~~~~~~~~---~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 299 (615)
T 1pgu_A 228 ----DRKISCFDGKSGEFLKYIEDDQEPVQ---GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 299 (615)
T ss_dssp ----TCCEEEEETTTCCEEEECCBTTBCCC---SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGG
T ss_pred ----CCeEEEEECCCCCEeEEecccccccC---CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccC
Confidence 456999999999999888 5 666 899999999 999999999999999999999999998886521 12
Q ss_pred CCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccc
Q 001386 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1088)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 703 (1088)
.+.++.|+ ++.++++++.||.|++||+.+++.+..+.+|...|.++++ |. +++
T Consensus 300 ~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~-------------------------l~~ 352 (615)
T 1pgu_A 300 QQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP-------------------------LIS 352 (615)
T ss_dssp CEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT-------------------------TEE
T ss_pred ceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC-------------------------cEE
Confidence 45677775 8999999999999999999998888889999999998888 51 788
Q ss_pred cccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCC
Q 001386 704 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRH 783 (1088)
Q Consensus 704 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~ 783 (1088)
++.|+.+++|++. .+. ..|...|.+++| +++..+++++.|+.+++|++.....
T Consensus 353 ~~~dg~i~~w~~~--------~~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~--------------- 405 (615)
T 1pgu_A 353 GSYDGRIMEWSSS--------SMH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEF--------------- 405 (615)
T ss_dssp EETTSCEEETTTT--------EEE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEEC---------------
T ss_pred ECCCCeEEEEEch--------hhc---CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcc---------------
Confidence 8999999999976 122 458899999999 6678899999999999998654321
Q ss_pred CCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeC-CC
Q 001386 784 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD-DS 862 (1088)
Q Consensus 784 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~-dg 862 (1088)
...+.+++++|++.+++++.++.+.+|+..+++.+..+. +...+.+++|+ +++|++++. ||
T Consensus 406 --------------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~~~~d~ 467 (615)
T 1pgu_A 406 --------------GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVGLEEGN 467 (615)
T ss_dssp --------------SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEEETTTS
T ss_pred --------------cCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc---CCEEEEeecCCC
Confidence 126788999999999999889999999999999988887 88899999998 579999999 99
Q ss_pred eEEEEEcCCceee-eeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCC-CccCCCCeEEEEE
Q 001386 863 TILIYNARSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG-VMTLAPSETHIQF 940 (1088)
Q Consensus 863 ~i~lwd~~~~~~~-~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~f 940 (1088)
.|++||+.+++.. ..+.+|...|++++|+|++++|++++.||.|++||+.+++ .+....+ |.. .|.+++|
T Consensus 468 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~h~~---~v~~~~~ 539 (615)
T 1pgu_A 468 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE-----VKTSRWAFRTS---KINAISW 539 (615)
T ss_dssp CEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEECCSCCCSS---CEEEEEE
T ss_pred eEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCc-----ceeEeecCCCC---ceeEEEE
Confidence 9999999998776 7788899999999999999999999999999999999865 3344444 443 7999999
Q ss_pred cC----------CCCEEEE-EeCCeEEEEEcCcc-eeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC
Q 001386 941 HK----------DQTRFLL-VHETHLAIYEAEEL-TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1006 (1088)
Q Consensus 941 s~----------dg~~l~~-~~d~~i~vwd~~~~-~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~ 1006 (1088)
+| ++++|++ +.|+.|++||+.++ +++.. +.+|...|.+++|+||++ |++++.||+|++|++.++
T Consensus 540 sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 540 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA-LNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVLE 615 (615)
T ss_dssp CCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE-TTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC--
T ss_pred cCccccccccccCCCEEEEEcCCCcEEEEECCCCceechh-hhcCccceEEEEEcCCCC-eEEecCCceEEEEeeecC
Confidence 99 9999999 57899999999998 55555 678999999999999999 999999999999998753
No 7
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-58 Score=572.21 Aligned_cols=631 Identities=11% Similarity=0.087 Sum_probs=466.5
Q ss_pred ecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCC
Q 001386 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1088)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg 408 (1088)
...+|.+.|++++|+|+|+ +||+|+.||+|+||+..+++... ...|...|.+++|+| |
T Consensus 12 ~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp-g 69 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK-G 69 (902)
T ss_dssp EEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-T
T ss_pred cccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-C
Confidence 3458999999999999999 79999999999999988776543 223788999999999 8
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee----------
Q 001386 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---------- 478 (1088)
Q Consensus 409 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~---------- 478 (1088)
++|++++.|++|++||+.+++.+. .+. |...|++++|+|+++ ++++|+.||+|++||+.++++.
T Consensus 70 ~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~ 143 (902)
T 2oaj_A 70 IYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKS 143 (902)
T ss_dssp TEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHHH
T ss_pred CEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceecccccc
Confidence 899999999999999999987665 343 678999999999999 8999999999999999988764
Q ss_pred -EEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCC------------------CCceEEEEEcc
Q 001386 479 -YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------------------GLGCTRMAYSA 539 (1088)
Q Consensus 479 -~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~v~~~~~s~ 539 (1088)
..+.+|.++|.+++|+|. ++..+++|+.||.| +||+++.+....+..+ ...|.+++|+|
T Consensus 144 ~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp 221 (902)
T 2oaj_A 144 SFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP 221 (902)
T ss_dssp HTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT
T ss_pred ccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC
Confidence 234679999999999763 34689999999999 9999998877766554 35799999999
Q ss_pred CCCEEEEEeeCCCCceeEEEEeCCCCceeEE--Ee---ccc----------cccccEEEEEEeC----CC-CEEEEEeCC
Q 001386 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRT--YQ---GLQ----------LQHNSVSVVHFDT----AK-DQILAAGDD 599 (1088)
Q Consensus 540 ~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~--~~---~~~----------~~~~~v~~~~~~~----~~-~~l~~~s~d 599 (1088)
+|++|++++. ++.|++||+.+++.+.. +. .|. .+...|.+++|++ ++ ..+++|+.+
T Consensus 222 dg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~ 297 (902)
T 2oaj_A 222 NSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI 297 (902)
T ss_dssp TSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred CCCEEEEEEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence 9999999986 45699999999987654 21 121 1235799999964 43 456667665
Q ss_pred -----CcEEEEEcC------------------CCeeeEEEeCCCCCCCCceEEEec----------CCCEEEEEeCCCcE
Q 001386 600 -----HVIKIWDMN------------------KVQLLTTIDAGGGLPENPRICFNK----------NGTLLAVIANENRI 646 (1088)
Q Consensus 600 -----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~v~~s~----------~~~~l~~~~~dg~i 646 (1088)
+.+.+|++. +++....+... ....+..+.+.+ ++..+++++.||.|
T Consensus 298 ~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l 376 (902)
T 2oaj_A 298 SRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEI 376 (902)
T ss_dssp TTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCE
T ss_pred CCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC-CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcE
Confidence 378899852 22333444321 123466777755 34578899999999
Q ss_pred EEEeCCCCCccc-------ccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccC
Q 001386 647 KILETPESNSVD-------AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 719 (1088)
Q Consensus 647 ~iwd~~~~~~~~-------~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~ 719 (1088)
++|++.++.... .+..|...|+++++++. ..++|+.....
T Consensus 377 ~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~---------------------------------~~~~w~~~~~~ 423 (902)
T 2oaj_A 377 ETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASV---------------------------------PNKLWLGALSA 423 (902)
T ss_dssp EEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEE---------------------------------EHHHHHHHHHT
T ss_pred EEEECCCCCcccccccCCCcccccCCCeeEEEEEEc---------------------------------CHHHHHHHHhc
Confidence 999997764322 23445566666666521 12334421110
Q ss_pred CCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeecc---CCCC
Q 001386 720 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDT---TDSN 796 (1088)
Q Consensus 720 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 796 (1088)
.... ..+..+|...+..++|+|+++.+++++.|++|++||+..+.... .+ .+...+ ...+
T Consensus 424 ~~~~---~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~-----~~---------~~~~~l~~~~~~~ 486 (902)
T 2oaj_A 424 AQNK---DYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD-----NA---------SFEVNLSRTLNKA 486 (902)
T ss_dssp TBCC---CCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT-----TB---------CEEEEHHHHTTCS
T ss_pred ccCC---CCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC-----Cc---------eEEeechhhcCCC
Confidence 0000 11234567778889999999999999999999999987653210 00 011000 0124
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCc---------------------------------------------e
Q 001386 797 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTF---------------------------------------------K 830 (1088)
Q Consensus 797 ~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~---------------------------------------------~ 830 (1088)
|...|.+++|+|||++||+|+ ||+|+|||+.++ +
T Consensus 487 h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 566 (902)
T 2oaj_A 487 KELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFM 566 (902)
T ss_dssp SSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEE
T ss_pred CCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccc
Confidence 888999999999999999998 899999999866 2
Q ss_pred eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee-----eec-cccCCeeEEEEC-----CCC---CE
Q 001386 831 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-----KLE-GHSKRVTGLVFS-----DAL---NI 896 (1088)
Q Consensus 831 ~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~-----~l~-~h~~~V~~l~~s-----~dg---~~ 896 (1088)
++..+.+|.+.|++++||| || +||+|+.|++|+|||+.++..+. .+. +|.+.|++|+|| ||| ++
T Consensus 567 ~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~ 644 (902)
T 2oaj_A 567 PSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSIL 644 (902)
T ss_dssp EEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEE
T ss_pred eeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceE
Confidence 4677889999999999999 88 99999999999999999887653 343 899999999999 886 89
Q ss_pred EEEEeCCCcEEEEEc---CCCceeeeeeeecCCCCcc--CCCCeEEEE-Ec----------------------CCCCEEE
Q 001386 897 LVSSGGDAQIFVWDV---DGWGIQTCRSLQTPDGVMT--LAPSETHIQ-FH----------------------KDQTRFL 948 (1088)
Q Consensus 897 las~s~Dg~i~iwd~---~~~~~~~~~~~~~~~~~~~--~~~~v~~~~-fs----------------------~dg~~l~ 948 (1088)
|++++.|++|++||+ .+|+.. ..+.++.. ....|..++ |+ +++..|+
T Consensus 645 l~sgs~D~tv~~wd~~p~~~g~~~-----~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~ 719 (902)
T 2oaj_A 645 MVCGTDMGEVITYKILPASGGKFD-----VQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLI 719 (902)
T ss_dssp EEEEETTSEEEEEEEEECGGGCEE-----EEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEE
T ss_pred EEEEecCCcEEEEEEecCCCCcEE-----EEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEE
Confidence 999999999999999 555422 22222221 113566665 65 4555444
Q ss_pred EEeCCeEEEEEcCcceeeeeeecCCCcCEEEE---E------EeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccC
Q 001386 949 LVHETHLAIYEAEELTCLKQWFPISSVPISQA---T------FSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLR 1019 (1088)
Q Consensus 949 ~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l---~------fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~ 1019 (1088)
+ .+..|+||++.++++..... .|...+.++ . |+++|..|++++.||+|++|++.+++.+.........
T Consensus 720 ~-~~~~ir~~~~~~~k~~~k~~-~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~~- 796 (902)
T 2oaj_A 720 T-GFDDIRLITLGKSKSTHKGF-KYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPFPI- 796 (902)
T ss_dssp E-CSSEEEEECTTCCCEEEEEC-SSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSSCC-
T ss_pred E-eccceEEEeCccccceeeEc-ccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccCCccc-
Confidence 4 48899999999999988764 566666666 5 7899999999999999999999999999887643211
Q ss_pred CCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 001386 1020 PTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1061 (1088)
Q Consensus 1020 ~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~~ 1061 (1088)
....+ ...+|.+ +|..|.-. ...++.+..+...+.
T Consensus 797 ---~~~~~--~~~~~~~-~G~~~~~~-~~~e~~~~~~~~~~~ 831 (902)
T 2oaj_A 797 ---AAKYI--TESSVLR-NGDIAIRV-SEFQASLFSTVKEQD 831 (902)
T ss_dssp ---CHHHH--TTCEECT-TSCEEEEC-SSSEEEEEEEESCCC
T ss_pred ---ccccc--cceEEcC-CCCEEEEe-ChhheEEEEEEcCCC
Confidence 11111 1245676 67755544 444566666544443
No 8
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2e-58 Score=606.56 Aligned_cols=590 Identities=16% Similarity=0.187 Sum_probs=498.6
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEE
Q 001386 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vw 470 (1088)
.+.+|.+.|++++|+|||++||+|+.||+|++||+.+++.+. .+.+|...|.+++|+|+++ ++++++.|++|++|
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW 684 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEE
Confidence 377899999999999999999999999999999999987655 6889999999999999999 89999999999999
Q ss_pred eCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeC
Q 001386 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1088)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 550 (1088)
|+.+++++..+.+|...|.+++|++..++.++++++.||.|++||++++.....+..|...|.+++|+|+++++++++.
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~- 763 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA- 763 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES-
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC-
Confidence 9999999999999999999999988777789999999999999999999999999999999999999999999999986
Q ss_pred CCCceeEEEEeCCCCceeEEEeccc----------cccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCC
Q 001386 551 KEGESFLVEWNESEGAIKRTYQGLQ----------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620 (1088)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 620 (1088)
++.|++||+.+++....+.... .....+.+++|+|++..+++++ ++.+.+||+.++..+..+...
T Consensus 764 ---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~- 838 (1249)
T 3sfz_A 764 ---DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTG- 838 (1249)
T ss_dssp ---SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECS-
T ss_pred ---CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCC-
Confidence 5569999999998877765322 1123678899999999999987 689999999999988887632
Q ss_pred CCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCc
Q 001386 621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP 700 (1088)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1088)
+...+.+++|+|+++++++++.||.|++|++.++.....+.+|...|.+++++ |++..
T Consensus 839 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s----------------------pdg~~ 896 (1249)
T 3sfz_A 839 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS----------------------PDGSS 896 (1249)
T ss_dssp SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEEC----------------------CCCCE
Confidence 23468999999999999999999999999999999999999999999999997 57888
Q ss_pred ccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccC
Q 001386 701 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQ 780 (1088)
Q Consensus 701 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 780 (1088)
+++++.|+.+++|+.......... .......+.+.+++..++.....+.+.++.......
T Consensus 897 l~s~s~dg~v~vw~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 956 (1249)
T 3sfz_A 897 FLTASDDQTIRVWETKKVCKNSAI--------VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI------------ 956 (1249)
T ss_dssp EEEEETTSCEEEEEHHHHHSCCSS--------SEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCE------------
T ss_pred EEEEeCCCeEEEEEccccceeeee--------cccceeeEEEcCCCcEEEEecCCcceEEEecCcceE------------
Confidence 999999999999996532221111 112334566777777777777777777776433211
Q ss_pred CCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEe
Q 001386 781 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 859 (1088)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~ 859 (1088)
.. .+...+.+++++|+++++++++ +|.|++||+.+++....+.+|...|++++|+| ++++|++++
T Consensus 957 ------~~-------~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~ 1022 (1249)
T 3sfz_A 957 ------DY-------LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLISSS 1022 (1249)
T ss_dssp ------EE-------ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEEEEC
T ss_pred ------EE-------cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEEEEEc
Confidence 11 1456799999999999999998 89999999999999999999999999999999 899999999
Q ss_pred CCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEE
Q 001386 860 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 939 (1088)
Q Consensus 860 ~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 939 (1088)
.||.|++||+.+++.+ .+.+|...|.+++|+|++ .+++++.||+|++||+.+++. .....+|.. .|.+++
T Consensus 1023 ~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~-----~~~~~~~~~---~v~~~~ 1092 (1249)
T 3sfz_A 1023 EDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRI-----ERDFTCHQG---TVLSCA 1092 (1249)
T ss_dssp SSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCC-----CEEEECCSS---CCCCEE
T ss_pred CCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCce-----eEEEcccCC---cEEEEE
Confidence 9999999999999876 456799999999999976 578899999999999998653 233344443 689999
Q ss_pred EcCCCCEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEecccccc
Q 001386 940 FHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYL 1018 (1088)
Q Consensus 940 fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~ 1018 (1088)
|+||++++++ +.|+.|++||+.+++++.. ..+|...|++++|||||++|++++.||.|++||+.+++.+..+.+....
T Consensus 1093 ~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~-l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~ 1171 (1249)
T 3sfz_A 1093 ISSDATKFSSTSADKTAKIWSFDLLSPLHE-LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVE 1171 (1249)
T ss_dssp ECSSSSSCEEECCSSCCCEECSSSSSCSBC-CCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC--
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCcceeee-eccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEecccccc
Confidence 9999999999 5789999999999998877 5589999999999999999999999999999999999887665322211
Q ss_pred CCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 001386 1019 RPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDT 1062 (1088)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~~~ 1062 (1088)
.. ...+.....+++|+| |+.+|++++ |.|++|++......
T Consensus 1172 ~~-~~~~~~~v~~l~fs~-dg~~l~s~~--g~v~vwd~~~g~~~ 1211 (1249)
T 3sfz_A 1172 EG-TATHGGWVTDVCFSP-DSKTLVSAG--GYLKWWNVATGDSS 1211 (1249)
T ss_dssp ------CCSCCCEEEECT-TSSCEEEES--SSEEEBCSSSCBCC
T ss_pred cc-ccccCceEEEEEECC-CCCEEEECC--CeEEEEECCCCcee
Confidence 11 011223456799999 889998885 99999999776543
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.9e-57 Score=548.25 Aligned_cols=555 Identities=11% Similarity=0.108 Sum_probs=466.7
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCC----CcccceeEeccCCCC-EEEEEecC--CCCcEEEEEEeCC
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGN-VNDLAFSA--PCKQISVITCGDD 464 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~----~~~~~~~~~~~h~~~-v~~~~~s~--d~~~l~l~s~s~d 464 (1088)
...|.+.|.+++|+|||++||+++ ++.|++||+.++ +... .+.+|... |++++|+| +++ +|++++.|
T Consensus 14 ~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~---~~~~h~~~~v~~~~~sp~~~~~--~l~s~~~d 87 (615)
T 1pgu_A 14 PSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVV---QFTGHGSSVVTTVKFSPIKGSQ--YLCSGDES 87 (615)
T ss_dssp CCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEE---EECTTTTSCEEEEEECSSTTCC--EEEEEETT
T ss_pred CCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccce---EEecCCCceEEEEEECcCCCCC--EEEEecCC
Confidence 346889999999999999999998 789999999987 5443 78899999 99999999 999 89999999
Q ss_pred CcEEEEeCCCC--------ceeEEeccCCccEEEEeeeeeCCceEEEEEecC----CeEEEEECCCCCceEEecCCCCce
Q 001386 465 KTIKVWDAVTG--------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGC 532 (1088)
Q Consensus 465 ~~i~vwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~v 532 (1088)
|.|++||+.++ +.+..+..|...|.+++|+ +++.++++++.+ +.|++|| ..+....+..+...|
T Consensus 88 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v 163 (615)
T 1pgu_A 88 GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD--FEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRI 163 (615)
T ss_dssp SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEEC--TTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCE
T ss_pred CEEEEEeCCCCcccccccccccchhhcccccEEEEEEe--CCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccE
Confidence 99999999855 6778888999999999995 577899999988 6888887 566778888999999
Q ss_pred EEEEEccCCC-EEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccc---cEEEEEEeCC-CCEEEEEeCCCcEEEEEc
Q 001386 533 TRMAYSANGR-RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN---SVSVVHFDTA-KDQILAAGDDHVIKIWDM 607 (1088)
Q Consensus 533 ~~~~~s~~g~-~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~s~dg~i~iwd~ 607 (1088)
.+++|+|+++ .+++++. ++.|++||..+++.+..+.+|. . .|.+++|+|+ ++++++++.||.|++||+
T Consensus 164 ~~~~~~~~~~~~l~~~~~----d~~v~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 236 (615)
T 1pgu_A 164 NACHLKQSRPMRSMTVGD----DGSVVFYQGPPFKFSASDRTHH---KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 236 (615)
T ss_dssp EEEEECSSSSCEEEEEET----TTEEEEEETTTBEEEEEECSSS---CTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred EEEEECCCCCcEEEEEeC----CCcEEEEeCCCcceeeeecccC---CCCceEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence 9999999998 6777765 5679999999999999999888 6 8999999999 999999999999999999
Q ss_pred CCCeeeEEE-e---CCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCccccccccc----CcceeeeecCCCcce
Q 001386 608 NKVQLLTTI-D---AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS----DNLRKLSVNPISTVT 679 (1088)
Q Consensus 608 ~~~~~~~~~-~---~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~v~~~~~~p~~~~~ 679 (1088)
.+++.+..+ . .+ ...|.+++|+ +++++++++.|+.|++||+.+++.+..+..+. ..+.++.+
T Consensus 237 ~~~~~~~~~~~~~~~~--~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~------- 306 (615)
T 1pgu_A 237 KSGEFLKYIEDDQEPV--QGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA------- 306 (615)
T ss_dssp TTCCEEEECCBTTBCC--CSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE-------
T ss_pred CCCCEeEEeccccccc--CCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe-------
Confidence 999999888 3 34 3468999999 99999999999999999999887777666553 22333332
Q ss_pred eccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceE
Q 001386 680 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 759 (1088)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~ 759 (1088)
+++..+++++.++.+++|++..... ...+ .+|...|.+++| |+ +++++.||.++
T Consensus 307 ----------------~~~~~l~~~~~~g~i~~~d~~~~~~----~~~~--~~~~~~v~~~~~-~~---l~~~~~dg~i~ 360 (615)
T 1pgu_A 307 ----------------TGNGRIISLSLDGTLNFYELGHDEV----LKTI--SGHNKGITALTV-NP---LISGSYDGRIM 360 (615)
T ss_dssp ----------------EETTEEEEEETTSCEEEEETTEEEE----EEEE--CCCSSCEEEEET-TT---TEEEETTSCEE
T ss_pred ----------------CCCCeEEEEECCCCEEEEECCCCcE----EEEE--eCCCCCEEEEEe-cC---cEEECCCCeEE
Confidence 2578899999999999999764221 1122 348899999999 88 99999999999
Q ss_pred EEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCC
Q 001386 760 MWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPP 838 (1088)
Q Consensus 760 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~ 838 (1088)
+|++. ++. ..|...|.++++ +++..+++++ ++.+++||+.+++...
T Consensus 361 ~w~~~---------------------~~~------~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~----- 407 (615)
T 1pgu_A 361 EWSSS---------------------SMH------QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS----- 407 (615)
T ss_dssp ETTTT---------------------EEE------CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS-----
T ss_pred EEEch---------------------hhc------CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC-----
Confidence 99753 011 248899999999 5566677766 9999999987665432
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeC-CCcEEEEEcCCCcee
Q 001386 839 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQ 917 (1088)
Q Consensus 839 ~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~-Dg~i~iwd~~~~~~~ 917 (1088)
.+.+++|+| ++.+++++ .++.+.+|++.+++.+..+. |...+.+++|+ +++|++++. |+.|++||+.+++..
T Consensus 408 --~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~ 480 (615)
T 1pgu_A 408 --QPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVS 480 (615)
T ss_dssp --CEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEE
T ss_pred --CceEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCcccc
Confidence 678999999 88888877 88999999999999888887 88999999999 899999999 999999999985422
Q ss_pred eeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEee----------CC
Q 001386 918 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC----------DC 986 (1088)
Q Consensus 918 ~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~----------dg 986 (1088)
. ....++.. .|.+++|+|||++|++ +.|+.|++||+.+++++..+...|...|++++|+| |+
T Consensus 481 ~----~~~~~~~~---~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~ 553 (615)
T 1pgu_A 481 F----DLKTPLRA---KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEE 553 (615)
T ss_dssp E----ECSSCCSS---CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSC
T ss_pred c----cccCCccC---ceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCC
Confidence 1 34444443 7999999999999999 47899999999999999885544999999999999 99
Q ss_pred CEEEEEeCCCcEEEEEcCCC-ceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001386 987 RMVFTSFVDGTLSIHEASNL-EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1058 (1088)
Q Consensus 987 ~~l~s~s~dg~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~ 1058 (1088)
++|++++.||.|++||+.++ ..+..+.. +.....+++|+| |+. |++++.||+|++|++..
T Consensus 554 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----------h~~~v~~l~~s~-~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 554 DLVATGSLDTNIFIYSVKRPMKIIKALNA----------HKDGVNNLLWET-PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp CEEEEEETTSCEEEEESSCTTCCEEETTS----------STTCEEEEEEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred CEEEEEcCCCcEEEEECCCCceechhhhc----------CccceEEEEEcC-CCC-eEEecCCceEEEEeeec
Confidence 99999999999999999998 55555431 123457789999 778 99999999999999863
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-56 Score=549.85 Aligned_cols=596 Identities=9% Similarity=0.044 Sum_probs=435.3
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
..+|...|++++|+||+++||+|+.||+|+|||..+++... ...|...|.+++|+| ++ +|++++.|++|++||
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~----~~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI----KLEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS 85 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE----ECSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE----EcCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence 45799999999999999999999999999999988765332 235888999999999 77 799999999999999
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCce-----------EEecCCCCceEEEEEccC
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-----------VDYDAPGLGCTRMAYSAN 540 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~v~~~~~s~~ 540 (1088)
+.+++++..+. |...|++++|+ +++.++++|+.||.|++||+++.... .....|...|.+++|+|+
T Consensus 86 ~~~~~~~~~~~-~~~~V~~v~~s--p~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 86 LYSQKVLTTVF-VPGKITSIDTD--ASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp TTTCSEEEEEE-CSSCEEEEECC--TTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred CCCCcEEEEEc-CCCCEEEEEEC--CCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 99999998886 77899999995 57789999999999999999877643 123557779999999996
Q ss_pred C-CEEEEEeeCCCCceeEEEEeCCCCceeEEEecc---------------ccccccEEEEEEeCCCCEEEEEeCCCcEEE
Q 001386 541 G-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL---------------QLQHNSVSVVHFDTAKDQILAAGDDHVIKI 604 (1088)
Q Consensus 541 g-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i 604 (1088)
+ ..+++++. ++.| +||+++++.++.+..+ ..|...|.+++|+|+|++|++++.||.|++
T Consensus 163 ~~~~l~~g~~----dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 163 DIGTVLISYE----YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp EEEEEEEECS----SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred CCCEEEEEeC----CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence 4 67777653 5668 9999999999888876 122367999999999999999999999999
Q ss_pred EEcCCCeeeEEEeC-----CC-----------CCCCCceEEEec----CC-CEEEEEeCC-----CcEEEEeCCCC----
Q 001386 605 WDMNKVQLLTTIDA-----GG-----------GLPENPRICFNK----NG-TLLAVIANE-----NRIKILETPES---- 654 (1088)
Q Consensus 605 wd~~~~~~~~~~~~-----~~-----------~~~~v~~v~~s~----~~-~~l~~~~~d-----g~i~iwd~~~~---- 654 (1088)
||+.+++++..... +. +...|.+++|++ ++ .++++|+.+ +.+.+|++...
T Consensus 238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~ 317 (902)
T 2oaj_A 238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYS 317 (902)
T ss_dssp EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGG
T ss_pred EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcc
Confidence 99999988764221 21 123588999964 33 567777665 37888885311
Q ss_pred --------------Ccccccc-cccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccC
Q 001386 655 --------------NSVDAAG-VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 719 (1088)
Q Consensus 655 --------------~~~~~~~-~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~ 719 (1088)
+....+. .+...+..+.+.+..... +. ...+...+++++.|+.+++|++..+.
T Consensus 318 ~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~----------~~--g~~d~~~l~~~s~dg~l~~~~~~~g~ 385 (902)
T 2oaj_A 318 ITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPY----------FA--GCHNPGLILLILGNGEIETMLYPSGI 385 (902)
T ss_dssp GCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSH----------HH--HTBSCSEEEEEETTSCEEEEETTTCC
T ss_pred ccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCC----------cC--CCCCceeEEEEcCCCcEEEEECCCCC
Confidence 1111111 123334444433210000 00 01244567788889999999974321
Q ss_pred CCcc-eeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCC
Q 001386 720 PSEC-QSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQ 798 (1088)
Q Consensus 720 ~~~~-~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1088)
.... .........|...|+++++++.... +|+...... ..+. .+..+|.
T Consensus 386 ~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~-----------~w~~~~~~~-------------~~~~------~~l~G~~ 435 (902)
T 2oaj_A 386 FTDKASLFPQNLSWLRPLATTSMAASVPNK-----------LWLGALSAA-------------QNKD------YLLKGGV 435 (902)
T ss_dssp EECCGGGSCGGGTTBTTBEEEEEEEEEEHH-----------HHHHHHHTT-------------BCCC------CSCCCSB
T ss_pred cccccccCCCcccccCCCeeEEEEEEcCHH-----------HHHHHHhcc-------------cCCC------CcccCCc
Confidence 1000 0001112335678998888764332 232110000 0000 0112477
Q ss_pred CCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeE----EE--ec-----CCCCCeEEEEEcCCCCcEEEEEeCCCeEEE
Q 001386 799 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI----LT--IM-----PPSPTATSLAFNPHDNNVIAIGMDDSTILI 866 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~----~~--~~-----~~~~~i~~l~~sp~d~~~lasg~~dg~i~l 866 (1088)
..+.+++|+|++++|++++ |++|++||+.++... .. +. +|...|.+++|+| |+++||+|+.||+|+|
T Consensus 436 ~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~l 514 (902)
T 2oaj_A 436 RTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVL 514 (902)
T ss_dssp CCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEE
T ss_pred CCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcEEEE
Confidence 7788899999999999998 999999999887421 11 11 7889999999999 8999999999999999
Q ss_pred EEcCCc---------------------------------------------eeeeeeccccCCeeEEEECCCCCEEEEEe
Q 001386 867 YNARSS---------------------------------------------EVISKLEGHSKRVTGLVFSDALNILVSSG 901 (1088)
Q Consensus 867 wd~~~~---------------------------------------------~~~~~l~~h~~~V~~l~~s~dg~~las~s 901 (1088)
||+.++ +++..+.+|.+.|++|+||||| +||+|+
T Consensus 515 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs 593 (902)
T 2oaj_A 515 FKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAY 593 (902)
T ss_dssp EEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEE
T ss_pred EEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEe
Confidence 999876 2467888999999999999999 999999
Q ss_pred CCCcEEEEEcCCCceeeeeeeecCC-CCccCCCCeEEEEEc-----CCC---CEEEE-EeCCeEEEEEc---Ccceeeee
Q 001386 902 GDAQIFVWDVDGWGIQTCRSLQTPD-GVMTLAPSETHIQFH-----KDQ---TRFLL-VHETHLAIYEA---EELTCLKQ 968 (1088)
Q Consensus 902 ~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~fs-----~dg---~~l~~-~~d~~i~vwd~---~~~~~~~~ 968 (1088)
.|++|+|||+.++.......+.... +|.. .|++++|+ ||| ++|++ +.|++|++||+ .+|++...
T Consensus 594 ~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~---~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~ 670 (902)
T 2oaj_A 594 AAGSLMLIDRRGPAIIYMENIREISGAQSA---CVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQ 670 (902)
T ss_dssp TTSEEEEEETTTTEEEEEEEGGGTCSSCCC---CEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEE
T ss_pred CCCcEEEEECCCCeEEEEeehhHhcccccc---ceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEE
Confidence 9999999999886533221223343 5554 89999999 886 78888 57899999999 88888776
Q ss_pred eecCC-----CcCEEEEE-Ee----------------------eCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCC
Q 001386 969 WFPIS-----SVPISQAT-FS----------------------CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1020 (1088)
Q Consensus 969 ~~~~h-----~~~v~~l~-fs----------------------~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~ 1020 (1088)
+. +| .++|..++ |+ ++|..|+++ +..|+||++.++++........
T Consensus 671 ~~-~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~~~~---- 743 (902)
T 2oaj_A 671 LM-DITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGFKYP---- 743 (902)
T ss_dssp EE-EEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEECSSC----
T ss_pred ec-CceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEcccc----
Confidence 43 44 46777776 76 455545443 8899999999998876653111
Q ss_pred CCccccccce-EEE------ECCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 001386 1021 TTSCLHVYPH-AIA------AHPLKPTQFAVGLTNGEVYVIEPNEPGD 1061 (1088)
Q Consensus 1021 ~~~~~~~~~~-~~~------~~p~d~~~l~~~~~dg~v~~w~l~~~~~ 1061 (1088)
..+..+ .+. |++ ++..|++++.||+|++|+++..+.
T Consensus 744 ----~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~~ 786 (902)
T 2oaj_A 744 ----LAATGLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPDFKE 786 (902)
T ss_dssp ----EEEEEEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTTCCE
T ss_pred ----eeeeEEEEEEecccccccc-CceEEEEEeCCCcEEEEECcchHH
Confidence 111111 135 677 788999999999999999988764
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3e-48 Score=487.20 Aligned_cols=482 Identities=15% Similarity=0.241 Sum_probs=384.7
Q ss_pred heeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEEC
Q 001386 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1088)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1088)
..+++.+|++.|++++|||||+ +||+|+.||.|+|||+.+++.+.. +.+|...|.+++|+
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~s 64 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKFI 64 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEE
T ss_pred cceeeecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEEe
Confidence 4578899999999999999999 689999999999999999987765 66799999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-ceeEEeccC
Q 001386 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGH 484 (1088)
Q Consensus 406 ~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~-~~~~~~~~~ 484 (1088)
|+|++||+|+.||.|++||+.+++.+. .+.+|.+.|++++|+|+++ ++++++.||.|++||+.++ .....+.+|
T Consensus 65 ~~~~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 139 (814)
T 3mkq_A 65 ARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGH 139 (814)
T ss_dssp GGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCC
Confidence 999999999999999999999987655 6789999999999999999 7999999999999999987 667888999
Q ss_pred CccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCC-CceEEEEEcc--CCCEEEEEeeCCCCceeEEEEe
Q 001386 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWN 561 (1088)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~--~g~~l~~~~~~~~~~~~i~iwd 561 (1088)
...|.+++|+|. ++..+++++.||.|++||+........+..+. ..+.+++|+| ++.++++++. ++.|++||
T Consensus 140 ~~~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~d 214 (814)
T 3mkq_A 140 EHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWD 214 (814)
T ss_dssp SSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEEE
T ss_pred CCcEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEEE
Confidence 999999999652 56799999999999999998887777666555 7899999999 9999999875 56799999
Q ss_pred CCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCC--EEEE
Q 001386 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLAV 639 (1088)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~ 639 (1088)
..+++.+..+.+|. ..|.+++|+|+++++++++.||.|++||+.+++.+..+..+.. .+.+++|+|++. ++++
T Consensus 215 ~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~ 289 (814)
T 3mkq_A 215 YQTKSCVATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIAS 289 (814)
T ss_dssp TTTTEEEEEEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSS--SEEEEEECTTCGGGEEEE
T ss_pred CCCCcEEEEEcCCC---CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC--cEEEEEEccCCCceEEEE
Confidence 99999999999887 8999999999999999999999999999999999998886643 689999999987 4555
Q ss_pred EeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccC
Q 001386 640 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 719 (1088)
Q Consensus 640 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~ 719 (1088)
++ ++.+.+|++......
T Consensus 290 ~~-~~~~~~~~~~~~~~~-------------------------------------------------------------- 306 (814)
T 3mkq_A 290 GF-DNGFTVLSLGNDEPT-------------------------------------------------------------- 306 (814)
T ss_dssp EE-TTEEEEEECSCCSCC--------------------------------------------------------------
T ss_pred Ee-CCCEEEEEcCCCCce--------------------------------------------------------------
Confidence 54 667888887643211
Q ss_pred CCcceeeecCCccccccEEEEEEecCCceEEEeccccce-EEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCC
Q 001386 720 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH-LMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQ 798 (1088)
Q Consensus 720 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v-~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1088)
+.++|+|..+++++.+... .++... ....|++..+............+.
T Consensus 307 --------------------~~~~~~g~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 356 (814)
T 3mkq_A 307 --------------------LSLDPVGKLVWSGGKNAAASDIFTAV----------IRGNEEVEQDEPLSLQTKELGSVD 356 (814)
T ss_dssp --------------------EEECSSSEEEEECCTTSCTTCEEEEE----------CCSCCCCCSSSCBCCCCEEECCCS
T ss_pred --------------------eEECCCCCEEEECcccccceeeeeee----------cccccccccCccceeeeecCCCCc
Confidence 2233333333333222110 000000 000112222221111111111356
Q ss_pred CCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee
Q 001386 799 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 878 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l 878 (1088)
..+.+++|+|+|+++++++++.+.+|++....... .+.+.+++|+| +++++++++.+|.|++|+ .+
T Consensus 357 ~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~-----~~~i~~~~~sp-dg~~la~~~~~g~v~l~~--------~~ 422 (814)
T 3mkq_A 357 VFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKA-----FGKCQDFVWGP-DSNSYALIDETGQIKYYK--------NF 422 (814)
T ss_dssp SCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEE-----EEECSEEEECT-TSSCEEEECTTCCEEEEE--------TT
T ss_pred cCCceeEECCCCCEEEEecCCEEEEEECccccccC-----CCceEEEEEeC-CCCeEEEEeCCCcEEEEE--------CC
Confidence 77899999999999999999999999987654432 35678999999 899999999999999995 45
Q ss_pred ccccCCeeEEEECCCC---CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-----
Q 001386 879 EGHSKRVTGLVFSDAL---NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----- 950 (1088)
Q Consensus 879 ~~h~~~V~~l~~s~dg---~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~----- 950 (1088)
.+|...+.+++|+||| .+|++++.|++|++||+.+++ .+.....+. ..++|+|||++|+++
T Consensus 423 ~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~-----~~~~~~~~~------~~v~~s~dg~~la~~~~~~~ 491 (814)
T 3mkq_A 423 KEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGT-----LVRRIDVNA------KDVIWSDNGELVMIVNTNSN 491 (814)
T ss_dssp EECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCC-----EEEEESSCE------EEEEECTTSSEEEEEECCCS
T ss_pred CCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCc-----EEEEEecCC------CEEEEcCCCCEEEEEEcCcc
Confidence 6688889999999998 689999999999999999865 333333332 389999999999997
Q ss_pred -eCCeEEEEEc
Q 001386 951 -HETHLAIYEA 960 (1088)
Q Consensus 951 -~d~~i~vwd~ 960 (1088)
.++.+.+|..
T Consensus 492 ~~~~~~~~~~~ 502 (814)
T 3mkq_A 492 GDEASGYTLLF 502 (814)
T ss_dssp SCSCSEEEEEE
T ss_pred cCCceEEEEEe
Confidence 6666666644
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.1e-45 Score=459.88 Aligned_cols=465 Identities=15% Similarity=0.175 Sum_probs=381.5
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+.+|.+.|.+++|+|||++||+++.||.|+|||+.+++.+. .+.+|...|.+++|+|+++ +|++++.||.|++||
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence 77899999999999999999999999999999999987555 6779999999999999999 899999999999999
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCC-CceEEecCCCCceEEEEEcc-CCCEEEEEee
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGT 549 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~ 549 (1088)
+.+++.+..+.+|...|.+++|++ ++.+|++++.||.|++||+++. .....+..+...+.+++|+| ++..+++++.
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred CCCCcEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 999999999999999999999954 6779999999999999999887 55667788889999999999 8889999875
Q ss_pred CCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeC--CCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCce
Q 001386 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1088)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1088)
++.|++||+.++.....+..+. ...+.+++|+| ++.++++++.||.|++||+.+++.+..+..+.. .|.+
T Consensus 162 ----dg~v~vwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~v~~ 233 (814)
T 3mkq_A 162 ----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSF 233 (814)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCC--TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS--CEEE
T ss_pred ----CCeEEEEECCCCcceeEEecCC--CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC--CEEE
Confidence 5569999999888877777654 46899999999 999999999999999999999999999886644 6899
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccC
Q 001386 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1088)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 707 (1088)
++|+|+++++++++.||.|++||..+++....+..
T Consensus 234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--------------------------------------------- 268 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV--------------------------------------------- 268 (814)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCSEEEEECC---------------------------------------------
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeec---------------------------------------------
Confidence 99999999999999999999999987654433322
Q ss_pred ccceeccccccCCCcceeeecCCccccccEEEEEEecCCceE-EEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCc
Q 001386 708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI-FALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQ 786 (1088)
Q Consensus 708 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1088)
+...+.+++|+|+|..+ ++.+.++.+.+|++...
T Consensus 269 -------------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 303 (814)
T 3mkq_A 269 -------------------------GLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND-------------------- 303 (814)
T ss_dssp -------------------------SSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCC--------------------
T ss_pred -------------------------CCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCC--------------------
Confidence 34567888899988753 66666777888874321
Q ss_pred ceeeccCCCCCCCCeeEEEEecCCCEEEEEeC-C---cEEE------EEcCCcee----EEEecCCCCCeEEEEEcCCCC
Q 001386 787 FMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-G---VISL------YIVMTFKT----ILTIMPPSPTATSLAFNPHDN 852 (1088)
Q Consensus 787 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d-g---~i~i------wd~~~~~~----~~~~~~~~~~i~~l~~sp~d~ 852 (1088)
...+.++|+|+.++++.. . .+.. |++..+.. ...+..+...+.+++|+| ++
T Consensus 304 --------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg 368 (814)
T 3mkq_A 304 --------------EPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP-NG 368 (814)
T ss_dssp --------------SCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-TS
T ss_pred --------------CceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-CC
Confidence 234778899999988762 1 1222 22333322 234455667889999999 89
Q ss_pred cEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCC
Q 001386 853 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 932 (1088)
Q Consensus 853 ~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 932 (1088)
+++++++ ||.+.+|++...... +.+.|.+++|+|||++|++++.||.|++|+.-. ++.
T Consensus 369 ~~la~~~-~~~~~i~~~~~~~~~-----~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~-------------~~~--- 426 (814)
T 3mkq_A 369 RFVTVVG-DGEYVIYTALAWRNK-----AFGKCQDFVWGPDSNSYALIDETGQIKYYKNFK-------------EVT--- 426 (814)
T ss_dssp SEEEEEE-TTEEEEEETTTTEEE-----EEEECSEEEECTTSSCEEEECTTCCEEEEETTE-------------ECT---
T ss_pred CEEEEec-CCEEEEEECcccccc-----CCCceEEEEEeCCCCeEEEEeCCCcEEEEECCC-------------Ccc---
Confidence 9999998 899999998754432 456789999999999999999999999996432 222
Q ss_pred CCeEEEEEcCCC---CEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEE------eCCCcEEEEE
Q 001386 933 PSETHIQFHKDQ---TRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTS------FVDGTLSIHE 1002 (1088)
Q Consensus 933 ~~v~~~~fs~dg---~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~------s~dg~v~vwd 1002 (1088)
..+.+++|+||| ++|++ +.|+.|++||+.+++.+..+. .|.. .++|||||++|+++ +.++.+.+|.
T Consensus 427 ~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~-~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 427 SWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRID-VNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp TCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEES-SCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred ceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEe-cCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence 247788999998 45555 789999999999999888743 4443 89999999999999 5555555543
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=9.7e-46 Score=421.31 Aligned_cols=288 Identities=22% Similarity=0.368 Sum_probs=267.4
Q ss_pred eecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
.+|.+|.++|++++|+|+++ ++++|+.||+|+|||+.+++.... +.+|...|.+++|+|+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~-------------------l~~h~~~V~~v~~~~~ 161 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHS 161 (410)
T ss_dssp CEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTT
T ss_pred EeecccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EeccCCcEEEEEEcCC
Confidence 45789999999999999998 799999999999999999987765 7789999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCcc
Q 001386 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1088)
Q Consensus 408 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1088)
|++||+|+.|++|++||+.+++++. .+.+|...|.+++|+|+++ ++++|+.|++|++||+.++.++.++.+|...
T Consensus 162 ~~~l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~ 236 (410)
T 1vyh_C 162 GKLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREW 236 (410)
T ss_dssp SSEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred CCEEEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCcc
Confidence 9999999999999999999887655 6789999999999999999 8999999999999999999999999999999
Q ss_pred EEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccC--------------------CCEEEEE
Q 001386 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN--------------------GRRLFSC 547 (1088)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~--------------------g~~l~~~ 547 (1088)
|.++.+ .+++.++++++.||.|++||+.+......+..|...|.+++|+|+ |.+|+++
T Consensus 237 v~~~~~--~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg 314 (410)
T 1vyh_C 237 VRMVRP--NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 314 (410)
T ss_dssp EEEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred EEEEEE--CCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE
Confidence 999988 457789999999999999999999999999999999999999996 6689988
Q ss_pred eeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCce
Q 001386 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1088)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1088)
+. ++.|++||+.++.++..+.+|. ..|.+++|+|++++|++++.||.|++||+.+++++..+..|.. .|.+
T Consensus 315 s~----D~~i~iwd~~~~~~~~~~~~h~---~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~--~v~~ 385 (410)
T 1vyh_C 315 SR----DKTIKMWDVSTGMCLMTLVGHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTS 385 (410)
T ss_dssp ET----TSEEEEEETTTTEEEEEEECCS---SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEE
T ss_pred eC----CCeEEEEECCCCceEEEEECCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC--cEEE
Confidence 75 5569999999999999999988 8999999999999999999999999999999999999987754 6999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeC
Q 001386 628 ICFNKNGTLLAVIANENRIKILET 651 (1088)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1088)
++|+|++.+|++|+.||+|++|+.
T Consensus 386 l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 386 LDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999999999999986
No 14
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=9.2e-40 Score=362.31 Aligned_cols=295 Identities=19% Similarity=0.272 Sum_probs=265.4
Q ss_pred hhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1088)
....++|.+|.+.|++++|+|||+ +|++|+.||+|+|||+.+++.+.. +..|...|.+++
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~~ 104 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCA 104 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEEE
Confidence 455688999999999999999999 799999999999999999987755 567999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCc-ccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEec
Q 001386 404 WSPDGSLLGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1088)
Q Consensus 404 ~s~dg~~las~~~dg~i~vwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~ 482 (1088)
|+|+|++||+|+.|+.|++||+.+++. ......+.+|.+.|.++.|++++. +++++.|++|++||+.+++++..+.
T Consensus 105 ~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~ 181 (340)
T 1got_B 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp ECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEc
Confidence 999999999999999999999987642 233446789999999999999875 7899999999999999999999999
Q ss_pred cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001386 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 562 (1088)
+|...|.+++|++ ++.++++|+.||.|++||+++......+..|...|.+++|+|++++|++++. ++.|++||+
T Consensus 182 ~h~~~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd~ 255 (340)
T 1got_B 182 GHTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDL 255 (340)
T ss_dssp CCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEET
T ss_pred CCCCceEEEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEEC
Confidence 9999999999954 6789999999999999999999999999999999999999999999999986 456999999
Q ss_pred CCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC
Q 001386 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1088)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1088)
++++.+..+.... +...|.+++|+|+++++++|+.||.|++||+.+++.+..+..|.. .|.+++|+|+|.+|++|+.
T Consensus 256 ~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~s~s~ 332 (340)
T 1got_B 256 RADQELMTYSHDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSW 332 (340)
T ss_dssp TTTEEEEEECCTT-CCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSCEEEEET
T ss_pred CCCcEEEEEccCC-cccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC--cEEEEEEcCCCCEEEEEcC
Confidence 9998877765322 235799999999999999999999999999999999999987654 6999999999999999999
Q ss_pred CCcEEEEe
Q 001386 643 ENRIKILE 650 (1088)
Q Consensus 643 dg~i~iwd 650 (1088)
|+.|++||
T Consensus 333 D~~i~iWd 340 (340)
T 1got_B 333 DSFLKIWN 340 (340)
T ss_dssp TSCEEEEC
T ss_pred CccEEecC
Confidence 99999996
No 15
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.9e-40 Score=360.30 Aligned_cols=295 Identities=15% Similarity=0.233 Sum_probs=265.8
Q ss_pred hhheeecccCCCCceeeeecCC----CCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCe
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPV----QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spd----g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V 399 (1088)
+.+.+.+.+|.+.|++++|+|+ +. +|++|+.|++|+|||+.+++.... ..+.+|...|
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~-----------------~~l~gh~~~v 83 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQ-----------------WSLEGHQLGV 83 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCE
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeee-----------------eeeccCCCCE
Confidence 3445677899999999999985 45 799999999999999987754321 1277899999
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001386 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1088)
Q Consensus 400 ~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~ 479 (1088)
.+++|+|++.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ ++++++.|+.|++||+.+++...
T Consensus 84 ~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~ 158 (321)
T 3ow8_A 84 VSVDISHTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEY 158 (321)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEE
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeE
Confidence 999999999999999999999999999987655 6778889999999999999 89999999999999999999999
Q ss_pred EeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001386 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1088)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 559 (1088)
.+..|...|.+++|+ +++++|++++.||.|++||+++++....+..+...|.+++|+|++++|++++. ++.|++
T Consensus 159 ~~~~~~~~v~~~~~s--pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~i 232 (321)
T 3ow8_A 159 SLDTRGKFILSIAYS--PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKI 232 (321)
T ss_dssp EEECSSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEE
T ss_pred EecCCCceEEEEEEC--CCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEE
Confidence 999999999999994 57789999999999999999999988899999999999999999999999975 556999
Q ss_pred EeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEE
Q 001386 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV 639 (1088)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 639 (1088)
||+++++....+.+|. ..|.+++|+|++.+|++++.|++|++||+.+++++..+..+.. .|.+++|+|++++|++
T Consensus 233 wd~~~~~~~~~~~~h~---~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~--~v~~v~~s~~g~~l~s 307 (321)
T 3ow8_A 233 YDVQHANLAGTLSGHA---SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD--QVWGVKYNGNGSKIVS 307 (321)
T ss_dssp EETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEE
T ss_pred EECCCcceeEEEcCCC---CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC--cEEEEEECCCCCEEEE
Confidence 9999999999999988 8999999999999999999999999999999999999986644 6999999999999999
Q ss_pred EeCCCcEEEEeCC
Q 001386 640 IANENRIKILETP 652 (1088)
Q Consensus 640 ~~~dg~i~iwd~~ 652 (1088)
++.||.|++||.+
T Consensus 308 ~~~d~~i~vwd~p 320 (321)
T 3ow8_A 308 VGDDQEIHIYDCP 320 (321)
T ss_dssp EETTCCEEEEECC
T ss_pred EeCCCeEEEEeCC
Confidence 9999999999964
No 16
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1e-39 Score=363.49 Aligned_cols=298 Identities=17% Similarity=0.244 Sum_probs=267.7
Q ss_pred hhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1088)
....++|.+|.+.|++++|+|||+ +||+|+.||+|+|||..+++.... +..|...|.+++
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~ 113 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACA 113 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEE
Confidence 456788999999999999999998 799999999999999999887654 556889999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCc---ccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001386 404 WSPDGSLLGVAYSKHIVQLYAYHGGSD---ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1088)
Q Consensus 404 ~s~dg~~las~~~dg~i~vwd~~~~~~---~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~ 480 (1088)
|+|+|.+||+|+.|+.+++|++..+.. ......+.+|...|.+++|+|++. .+++++.|++|++||+++++++..
T Consensus 114 ~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~ 191 (354)
T 2pbi_B 114 YAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQS 191 (354)
T ss_dssp ECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEE
T ss_pred ECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEE
Confidence 999999999999999999999975421 223446778999999999999999 799999999999999999999999
Q ss_pred eccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEE
Q 001386 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1088)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 560 (1088)
+.+|...|.++++++++++.+|++|+.||.|++||+++++....+..|...|.+++|+|++.+|++++. ++.|++|
T Consensus 192 ~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lw 267 (354)
T 2pbi_B 192 FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLY 267 (354)
T ss_dssp EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEE
T ss_pred EcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEE
Confidence 999999999999988878889999999999999999999999999999999999999999999999986 5569999
Q ss_pred eCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEE
Q 001386 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 640 (1088)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 640 (1088)
|+++++.+..+..+. ....+.+++|+|++.++++++.|+.|++||+.+++.+..+..|.. .|.+++|+|+|++|+++
T Consensus 268 d~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~--~v~~l~~spdg~~l~sg 344 (354)
T 2pbi_B 268 DLRADREVAIYSKES-IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN--RVSTLRVSPDGTAFCSG 344 (354)
T ss_dssp ETTTTEEEEEECCTT-CCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS--CEEEEEECTTSSCEEEE
T ss_pred ECCCCcEEEEEcCCC-cccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC--cEEEEEECCCCCEEEEE
Confidence 999988777766443 234789999999999999999999999999999999988876644 69999999999999999
Q ss_pred eCCCcEEEEe
Q 001386 641 ANENRIKILE 650 (1088)
Q Consensus 641 ~~dg~i~iwd 650 (1088)
+.|++|++|+
T Consensus 345 s~D~~v~vW~ 354 (354)
T 2pbi_B 345 SWDHTLRVWA 354 (354)
T ss_dssp ETTSEEEEEC
T ss_pred cCCCCEEecC
Confidence 9999999995
No 17
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.6e-39 Score=352.39 Aligned_cols=293 Identities=18% Similarity=0.304 Sum_probs=256.8
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
...++|.+|++.|++++|||||+ +|++|+.||+|+|||+.++..+.. +.+|..+|.+++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 63 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKF 63 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEE
Confidence 34578899999999999999999 789999999999999999987765 6679999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc-eeEEecc
Q 001386 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEG 483 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~-~~~~~~~ 483 (1088)
+|++++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ ++++|+.|++|++||+.++. ....+.+
T Consensus 64 ~~~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~ 138 (304)
T 2ynn_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEG 138 (304)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECC
T ss_pred eCCCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcc
Confidence 9999999999999999999999997655 6889999999999999999 89999999999999999874 5577899
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEec-CCCCceEEEEEcc--CCCEEEEEeeCCCCceeEEEE
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEW 560 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~--~g~~l~~~~~~~~~~~~i~iw 560 (1088)
|...|.+++|+|. ++.+|++|+.||+|++||++.......+. .+...+..+.|+| ++.+|++++. ++.|++|
T Consensus 139 h~~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iW 213 (304)
T 2ynn_A 139 HEHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIW 213 (304)
T ss_dssp CCSCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEE
T ss_pred cCCcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEE
Confidence 9999999999653 45799999999999999998877665554 4556888899886 7789999876 5679999
Q ss_pred eCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCC--EEE
Q 001386 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLA 638 (1088)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~ 638 (1088)
|+++++++..+.+|. ..|.+++|+|++++|++++.||+|++||+.+++.+..+..+. ..+.+++|+|++. +++
T Consensus 214 d~~~~~~~~~~~~h~---~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a 288 (304)
T 2ynn_A 214 DYQTKSCVATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIA 288 (304)
T ss_dssp ETTTTEEEEEEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS--SSEEEEEECTTCGGGCEE
T ss_pred eCCCCccceeeCCCC---CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC--ccEEEEEECCCCCceEEE
Confidence 999999999999988 899999999999999999999999999999999999998654 3688999999875 577
Q ss_pred EEeCCCcEEEEeCCC
Q 001386 639 VIANENRIKILETPE 653 (1088)
Q Consensus 639 ~~~~dg~i~iwd~~~ 653 (1088)
+|+.+ .+.+|++..
T Consensus 289 sg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 289 SGFDN-GFTVLSLGN 302 (304)
T ss_dssp EEETT-EEEEEECC-
T ss_pred EecCC-ceEEEEecc
Confidence 77665 567777653
No 18
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7.9e-39 Score=351.04 Aligned_cols=301 Identities=19% Similarity=0.239 Sum_probs=259.1
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
.+..+|.+|++.|++++|+|++..+|++|+.|++|++||+.+....... ....+.+|...|.+++|
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~~~~ 73 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------PVRSFKGHSHIVQDCTL 73 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEE--------------EEEEEECCSSCEEEEEE
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccc--------------cceEEeCCcccEEEEEE
Confidence 3457889999999999999977448999999999999999764432111 11237789999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccC
Q 001386 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 484 (1088)
+|||++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. ++++++.|++|++||+. ++++..+.+|
T Consensus 74 s~dg~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~h 147 (319)
T 3frx_A 74 TADGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLGH 147 (319)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECCC
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEecc
Confidence 9999999999999999999999987655 6889999999999999999 89999999999999975 6778899999
Q ss_pred CccEEEEeeeeeC----CceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEE
Q 001386 485 GAPVYSLCPHAKE----NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1088)
Q Consensus 485 ~~~v~~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 560 (1088)
...|.++.+.+.. ++..+++++.|+.|++||++..+....+..|...|.+++|+|+|++|++++. ++.|++|
T Consensus 148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~iw 223 (319)
T 3frx_A 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLW 223 (319)
T ss_dssp SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEEE
T ss_pred CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEE
Confidence 9999999997643 4558999999999999999998888889999999999999999999999986 5679999
Q ss_pred eCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCC------CCCCCceEEEecCC
Q 001386 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG------GLPENPRICFNKNG 634 (1088)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~v~~s~~~ 634 (1088)
|+.+++.+..+..+ ..+.+++|+|++.++++++.+ .+++|++..+..+..+..+. ....+.+++|+|||
T Consensus 224 d~~~~~~~~~~~~~----~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 298 (319)
T 3frx_A 224 NLAAKKAMYTLSAQ----DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298 (319)
T ss_dssp ETTTTEEEEEEECC----SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTS
T ss_pred ECCCCcEEEEecCC----CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCC
Confidence 99999998888764 479999999999998888754 59999999888777765431 12357799999999
Q ss_pred CEEEEEeCCCcEEEEeCCCC
Q 001386 635 TLLAVIANENRIKILETPES 654 (1088)
Q Consensus 635 ~~l~~~~~dg~i~iwd~~~~ 654 (1088)
++|++|+.||.|++|++.++
T Consensus 299 ~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 299 QTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp SEEEEEETTSCEEEEEEEEC
T ss_pred CEEEEeecCceEEEEEEeec
Confidence 99999999999999998653
No 19
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.8e-39 Score=365.83 Aligned_cols=305 Identities=17% Similarity=0.260 Sum_probs=264.9
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
.+.++|.+|.+.|++++|+|+|+ +|++|+.|++|+|||+.+++.+.. +.+|...|.+++|
T Consensus 57 ~~~~~l~gH~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v~~~~~ 116 (380)
T 3iz6_a 57 VCCRTLQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWVMECAF 116 (380)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTCCCCEE
T ss_pred EEeecccccccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccceE-------------------EecCCCCEEEEEE
Confidence 46688999999999999999998 699999999999999999987755 6679999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCc----ccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001386 405 SPDGSLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~ 480 (1088)
+|+|++||+|+.|+.+++||+.+... ......+.+|.+.|.+++|+|++.. .+++|+.|++|++||+.+++++..
T Consensus 117 s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~~ 195 (380)
T 3iz6_a 117 APNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRISI 195 (380)
T ss_dssp CTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEEE
T ss_pred CCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEEE
Confidence 99999999999999999999976431 1223357899999999999998654 699999999999999999999888
Q ss_pred e-----ccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCC-CCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCc
Q 001386 481 F-----EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1088)
Q Consensus 481 ~-----~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~ 554 (1088)
+ .+|...|.++++.+. ++.++++|+.||.|++||++. ......+..|...|.+++|+|++++|++++. +
T Consensus 196 ~~~~~~~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D 270 (380)
T 3iz6_a 196 FGSEFPSGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD----D 270 (380)
T ss_dssp ECCCSSSSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS----S
T ss_pred eecccCCCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC----C
Confidence 7 679999999998643 567999999999999999984 4667788899999999999999999999976 5
Q ss_pred eeEEEEeCCCCceeEEEecccc----ccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeC--CCCCCCCceE
Q 001386 555 SFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA--GGGLPENPRI 628 (1088)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~v 628 (1088)
+.|++||+++++.+..+..+.. +...+.+++|+|+|+++++|+.||.|++||..+++.+..+.. ..+...|.++
T Consensus 271 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l 350 (380)
T 3iz6_a 271 GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCL 350 (380)
T ss_dssp SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEE
T ss_pred CeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEE
Confidence 5699999999999888876541 113488999999999999999999999999999988877732 2334579999
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 629 CFNKNGTLLAVIANENRIKILETPESN 655 (1088)
Q Consensus 629 ~~s~~~~~l~~~~~dg~i~iwd~~~~~ 655 (1088)
+|+|+|++|++|+.|++|++|++...+
T Consensus 351 ~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 351 GLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 999999999999999999999988654
No 20
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.8e-38 Score=347.85 Aligned_cols=292 Identities=17% Similarity=0.274 Sum_probs=248.6
Q ss_pred ceeEEEeccccccccEEEEEEeCC----CCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEe
Q 001386 566 AIKRTYQGLQLQHNSVSVVHFDTA----KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1088)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1088)
...+...+|. +.|.+++|+|+ +.+|++|+.|++|++|++.+++........++...|.+++|++++.++++++
T Consensus 23 ~~~~~~~~H~---~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s 99 (321)
T 3ow8_A 23 ILFKQEQAHD---DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSS 99 (321)
T ss_dssp EEEEETTSSS---SCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred heeeecccCC---CcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEe
Confidence 3344555666 99999999875 5789999999999999998876544433334455799999999999999999
Q ss_pred CCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCC
Q 001386 642 NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS 721 (1088)
Q Consensus 642 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~ 721 (1088)
.|++|++||+.+++.+..+.
T Consensus 100 ~D~~i~lWd~~~~~~~~~~~------------------------------------------------------------ 119 (321)
T 3ow8_A 100 LDAHIRLWDLENGKQIKSID------------------------------------------------------------ 119 (321)
T ss_dssp TTSEEEEEETTTTEEEEEEE------------------------------------------------------------
T ss_pred CCCcEEEEECCCCCEEEEEe------------------------------------------------------------
Confidence 99999999987553221110
Q ss_pred cceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCe
Q 001386 722 ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAV 801 (1088)
Q Consensus 722 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 801 (1088)
.+...+
T Consensus 120 --------------------------------------------------------------------------~~~~~~ 125 (321)
T 3ow8_A 120 --------------------------------------------------------------------------AGPVDA 125 (321)
T ss_dssp --------------------------------------------------------------------------CCTTCC
T ss_pred --------------------------------------------------------------------------CCCccE
Confidence 133455
Q ss_pred eEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecc
Q 001386 802 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 880 (1088)
Q Consensus 802 ~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~ 880 (1088)
.+++|+|++++|++++ ++.|++|++.+++....+..+...+.+++|+| ++++|++|+.||.|++||+.+++.+..+.+
T Consensus 126 ~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~ 204 (321)
T 3ow8_A 126 WTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEG 204 (321)
T ss_dssp CCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcc
Confidence 6788999999999987 88999999999999889998999999999999 899999999999999999999999999999
Q ss_pred ccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEE
Q 001386 881 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYE 959 (1088)
Q Consensus 881 h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd 959 (1088)
|..+|.+++|+|++++|++++.|++|++||+.+++ ......+|.. .|.+++|+|++++|++ +.|+.|++||
T Consensus 205 h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~-----~~~~~~~h~~---~v~~~~~sp~~~~l~s~s~D~~v~iwd 276 (321)
T 3ow8_A 205 HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN-----LAGTLSGHAS---WVLNVAFCPDDTHFVSSSSDKSVKVWD 276 (321)
T ss_dssp CSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC-----EEEEECCCSS---CEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc-----eeEEEcCCCC---ceEEEEECCCCCEEEEEeCCCcEEEEe
Confidence 99999999999999999999999999999999854 3344555654 7999999999999999 5789999999
Q ss_pred cCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcC
Q 001386 960 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1004 (1088)
Q Consensus 960 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~ 1004 (1088)
+.+++++..+ .+|...|.+++|+|||++|++++.||+|++||.+
T Consensus 277 ~~~~~~~~~~-~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 277 VGTRTCVHTF-FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCCCEEEEEE-cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999884 5799999999999999999999999999999964
No 21
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.7e-38 Score=359.93 Aligned_cols=286 Identities=18% Similarity=0.289 Sum_probs=266.5
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+.+|..+|++++|+|++.+|++|+.||+|++||+.+++..+ .+.+|...|.+++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 66799999999999999999999999999999999997665 7889999999999999999 899999999999999
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCC
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
+.+++++..+.+|...|.+++|++ ++.+|++|+.|++|++||++++.....+..|...|.++.++|+++++++++.
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~-- 254 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN-- 254 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCceeEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC--
Confidence 999999999999999999999965 6679999999999999999999999999999999999999999999999986
Q ss_pred CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCC--------------------CCEEEEEeCCCcEEEEEcCCCe
Q 001386 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--------------------KDQILAAGDDHVIKIWDMNKVQ 611 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~s~dg~i~iwd~~~~~ 611 (1088)
++.|++||+.+++....+.+|. ..|.+++|+|+ +.++++|+.|+.|++||+.+++
T Consensus 255 --D~~v~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~ 329 (410)
T 1vyh_C 255 --DQTVRVWVVATKECKAELREHR---HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329 (410)
T ss_dssp --TSCEEEEETTTCCEEEEECCCS---SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred --CCeEEEEECCCCceeeEecCCC---ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 4559999999999999998888 89999999996 6789999999999999999999
Q ss_pred eeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeec
Q 001386 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 691 (1088)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~ 691 (1088)
++..+..|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+.+|...|.+++|+
T Consensus 330 ~~~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~------------------ 389 (410)
T 1vyh_C 330 CLMTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH------------------ 389 (410)
T ss_dssp EEEEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEEC------------------
T ss_pred eEEEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEc------------------
Confidence 9999987654 68999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCcccccccCccceeccc
Q 001386 692 EDPKEDVKPEISVEAENKSEVEKP 715 (1088)
Q Consensus 692 ~~~~~~~~~l~~~~~d~~i~vw~~ 715 (1088)
|++.++++++.|++|++|+.
T Consensus 390 ----~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 390 ----KTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ----SSSSCEEEEETTSEEEEEC-
T ss_pred ----CCCCEEEEEeCCCcEEEEeC
Confidence 56888999999999999984
No 22
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.8e-38 Score=348.41 Aligned_cols=306 Identities=15% Similarity=0.237 Sum_probs=249.5
Q ss_pred hheeecccCCC-CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEE
Q 001386 325 TVAQTLIEGSS-SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1088)
Q Consensus 325 ~~~~~l~~h~~-~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1088)
.++++|.+|.+ .|++++|||||+ +||+|+.|++|+|||+.++..... .....+|...|.+++
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h~~~v~~~~ 68 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGHQRTVRKVA 68 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEE----------------EEECSSCSSCEEEEE
T ss_pred EEeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceee----------------eeeccccCCcEEEEE
Confidence 46788999988 999999999999 799999999999999988754321 112468999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc---eeEE
Q 001386 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTYS 480 (1088)
Q Consensus 404 ~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~---~~~~ 480 (1088)
|+|||++||+|+.|++|++||+.++.. .....+.+|...|.+++|+|+++ +|++++.|++|++||+.++. ++..
T Consensus 69 ~sp~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~ 145 (345)
T 3fm0_A 69 WSPCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVSV 145 (345)
T ss_dssp ECTTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred ECCCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEEE
Confidence 999999999999999999999987642 23346889999999999999999 89999999999999998764 4567
Q ss_pred eccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc--eEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEE
Q 001386 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1088)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~ 558 (1088)
+.+|...|.+++|+| ++.+|++++.|+.|++||.+.... ...+..|...|.+++|+|+|++|++++. ++.|+
T Consensus 146 ~~~h~~~v~~~~~~p--~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v~ 219 (345)
T 3fm0_A 146 LNSHTQDVKHVVWHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTVR 219 (345)
T ss_dssp ECCCCSCEEEEEECS--SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEE
T ss_pred ecCcCCCeEEEEECC--CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeEE
Confidence 889999999999955 667999999999999999987653 4577888999999999999999999986 55699
Q ss_pred EEeCCCC---------------ceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe----eeEEE---
Q 001386 559 EWNESEG---------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ----LLTTI--- 616 (1088)
Q Consensus 559 iwd~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~----~~~~~--- 616 (1088)
+||.... .++..+.+. |...|.+++|+|++..+++++.|+.|++|+...+. ....+
T Consensus 220 iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 297 (345)
T 3fm0_A 220 IWRQYLPGNEQGVACSGSDPSWKCICTLSGF--HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAH 297 (345)
T ss_dssp EEEEECTTCTTCCCCC---CEEEEEEEECSS--CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEE
T ss_pred EeccccCCCCccceeeccCCccceeEEecCC--CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEee
Confidence 9996322 233344441 24789999999999999999999999999987643 11111
Q ss_pred eCCCCCCCCceEEEecCC-CEEEEEeCCCcEEEEeCCCCCccc
Q 001386 617 DAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVD 658 (1088)
Q Consensus 617 ~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 658 (1088)
....+...|.+++|+|++ .+|++++.||+|++|+..+++...
T Consensus 298 ~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 298 LHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp ETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred ecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 112344579999999987 599999999999999999876543
No 23
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.5e-37 Score=344.42 Aligned_cols=286 Identities=14% Similarity=0.184 Sum_probs=262.2
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+.+|.+.|.+++|+||+++|++|+.||+|++||+.+++.+. .+..|...|.+++|+|+++ ++++++.|+.|++||
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEEE
Confidence 78899999999999999999999999999999999987554 6778999999999999999 899999999999999
Q ss_pred CCCCc----eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001386 472 AVTGS----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1088)
Q Consensus 472 ~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 547 (1088)
+.++. ....+.+|.+.|.++.|.+ ++ .+++++.|+.|++||++++.....+..|...|.+++|+|++++++++
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLD--DN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CccCCCcceeEEEecCCCccEEEEEECC--CC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 98763 4567889999999999964 33 58999999999999999999988999999999999999999999999
Q ss_pred eeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCce
Q 001386 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1088)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1088)
+. ++.|++||+.++..+..+.+|. ..|.+++|+|+++++++++.||+|++||+.+++.+..+........|.+
T Consensus 203 ~~----d~~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~ 275 (340)
T 1got_B 203 AC----DASAKLWDVREGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275 (340)
T ss_dssp ET----TSCEEEEETTTCSEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred eC----CCcEEEEECCCCeeEEEEcCCc---CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEE
Confidence 86 4569999999999999999888 8999999999999999999999999999999998888775554456899
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccC
Q 001386 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1088)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 707 (1088)
++|+|+|+++++|+.||.|++||..++.....+.+|...|.+++++ +++.++++++.|
T Consensus 276 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s----------------------~dg~~l~s~s~D 333 (340)
T 1got_B 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT----------------------DDGMAVATGSWD 333 (340)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC----------------------TTSSCEEEEETT
T ss_pred EEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEc----------------------CCCCEEEEEcCC
Confidence 9999999999999999999999999999999999999999999997 678899999999
Q ss_pred ccceecc
Q 001386 708 NKSEVEK 714 (1088)
Q Consensus 708 ~~i~vw~ 714 (1088)
++|++|+
T Consensus 334 ~~i~iWd 340 (340)
T 1got_B 334 SFLKIWN 340 (340)
T ss_dssp SCEEEEC
T ss_pred ccEEecC
Confidence 9999996
No 24
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.9e-37 Score=338.44 Aligned_cols=295 Identities=18% Similarity=0.312 Sum_probs=260.6
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
....++.+|.+.|++++|+|+|+ +|++|+.||.|+||++.+++.... +.+|...|.+++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~-------------------~~~h~~~v~~~~~ 73 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKT-------------------ISGHKLGISDVAW 73 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchh-------------------hccCCCceEEEEE
Confidence 45677899999999999999999 689999999999999999886654 6789999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccC
Q 001386 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 484 (1088)
+|++++|++++.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ ++++++.|+.|++||+.+++++..+..|
T Consensus 74 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 148 (312)
T 4ery_A 74 SSDSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAH 148 (312)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred cCCCCEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCC
Confidence 9999999999999999999999987655 6789999999999999999 8999999999999999999999999999
Q ss_pred CccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEec-CCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC
Q 001386 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1088)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 563 (1088)
..+|.+++|+ +++.++++++.||.|++||+++.+....+. .+...+..++|+|+++++++++. ++.|++||+.
T Consensus 149 ~~~v~~~~~~--~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~ 222 (312)
T 4ery_A 149 SDPVSAVHFN--RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYS 222 (312)
T ss_dssp SSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETT
T ss_pred CCcEEEEEEc--CCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECC
Confidence 9999999995 467899999999999999999888766554 45567999999999999999875 5569999999
Q ss_pred CCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEe--
Q 001386 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-- 641 (1088)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-- 641 (1088)
+++.+..+.+|......+......+++.++++|+.||.|++||+.+++.+..+..|.. .|.+++|+|+++++++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~~~~ 300 (312)
T 4ery_A 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD--VVISTACHPTENIIASAALE 300 (312)
T ss_dssp TTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSS--CEEEEEECSSSSEEEEEECT
T ss_pred CCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCC--cEEEEeecCcCCceEEEEcc
Confidence 9999999988873323344444457788999999999999999999999999987644 689999999999999997
Q ss_pred CCCcEEEEeCC
Q 001386 642 NENRIKILETP 652 (1088)
Q Consensus 642 ~dg~i~iwd~~ 652 (1088)
.|+.|++|+..
T Consensus 301 ~d~~i~~W~~d 311 (312)
T 4ery_A 301 NDKTIKLWKSD 311 (312)
T ss_dssp TTCCEEEEECC
T ss_pred CCccEEEecCC
Confidence 69999999864
No 25
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.8e-38 Score=350.16 Aligned_cols=294 Identities=13% Similarity=0.149 Sum_probs=238.4
Q ss_pred ccCCCCceeeeecCCCCeEEEEEcc------cCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 331 IEGSSSPMSMDFHPVQHTLLLVGTN------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 331 ~~h~~~V~~v~~spdg~~lla~g~~------dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
..|...|++|+|||||+ +||+|+. |++|++|+..++........ ...+|...|.+++|
T Consensus 39 ~~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~---------------~~~~~~~~V~~~~~ 102 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT---------------AGVQTEAGVTDVAW 102 (357)
T ss_dssp -CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGGCS---------------EEEECSSCEEEEEE
T ss_pred ccccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeEec---------------ccCCCCCCEEEEEE
Confidence 57999999999999999 7889887 67899999888765432111 14458899999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccc-eeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEecc
Q 001386 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~~~~~~~~~-~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~ 483 (1088)
+|++++| +++.||+|+|||+.+++.... .....+|...|++++|+|+++ +|++++.|++|++||+.+++++..+.+
T Consensus 103 s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~ 179 (357)
T 4g56_B 103 VSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNA 179 (357)
T ss_dssp ETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred cCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 9998655 577899999999998875432 224558999999999999999 899999999999999999999999999
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEe--cCCCCceEEEEEccCC-CEEEEEeeCCCCceeEEEE
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEW 560 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~~g-~~l~~~~~~~~~~~~i~iw 560 (1088)
|...|++++|++..+ .++++++.||.|++||+++.+....+ ..+...+.+++|+|++ .++++++. ++.|++|
T Consensus 180 h~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~w 254 (357)
T 4g56_B 180 HSSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSLV 254 (357)
T ss_dssp CSSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEEE
T ss_pred CCCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeEE
Confidence 999999999965432 47899999999999999988766544 3455679999999985 56777765 4569999
Q ss_pred eCCCCceeEEEeccccccccEEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec-CCCEEE
Q 001386 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLA 638 (1088)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~ 638 (1088)
|+++++.++.+.+|. ..|.+++|+|++ ++|++++.|++|+|||+.+++.+..+ .| ...|.+++|+| ++++|+
T Consensus 255 d~~~~~~~~~~~~~~---~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H--~~~V~~vafsP~d~~~l~ 328 (357)
T 4g56_B 255 NIKNPDSAQTSAVHS---QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SH--RDFVTGVAWSPLDHSKFT 328 (357)
T ss_dssp ESSCGGGCEEECCCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CC--SSCEEEEEECSSSTTEEE
T ss_pred ECCCCcEeEEEeccc---eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CC--CCCEEEEEEeCCCCCEEE
Confidence 999999999999888 899999999987 57889999999999999999887765 33 44699999998 899999
Q ss_pred EEeCCCcEEEEeCCCC
Q 001386 639 VIANENRIKILETPES 654 (1088)
Q Consensus 639 ~~~~dg~i~iwd~~~~ 654 (1088)
+++.||+|++|++.+.
T Consensus 329 s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 329 TVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEETTSCEEEEECC--
T ss_pred EEcCCCeEEEEECCCC
Confidence 9999999999999764
No 26
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=343.80 Aligned_cols=299 Identities=14% Similarity=0.117 Sum_probs=238.3
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccc-cceeeeecCCCCCeEEEEECCCCCE
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSM-LFKTALVRDPGVSVNRVVWSPDGSL 410 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~h~~~V~~l~~s~dg~~ 410 (1088)
.|...|.+++|||||+ +|++++ |+++++||.... +|+...... .........|...|.+++|+||+ .
T Consensus 28 ~~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~ 95 (344)
T 4gqb_B 28 CMERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSLW---------LFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-G 95 (344)
T ss_dssp SCCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEEE---------EESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-E
T ss_pred cccCCEEEEEECCCCC-EEEEEe-CCceEEeeceee---------eeccccccCCcceeeeeeccCCCEEEEEEeCCC-e
Confidence 5666899999999999 677776 788888874211 111100000 00011123367889999999985 6
Q ss_pred EEEEeCCCEEEEEEccCCCcccce-eEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEE
Q 001386 411 LGVAYSKHIVQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1088)
Q Consensus 411 las~~~dg~i~vwd~~~~~~~~~~-~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~ 489 (1088)
|++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|+|+ +|++|+.|++|++||+.+++++..+.+|...|.
T Consensus 96 l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~ 173 (344)
T 4gqb_B 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT 173 (344)
T ss_dssp EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE
Confidence 889999999999999998865432 23568999999999999999 899999999999999999999999999999999
Q ss_pred EEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEec--CCCCceEEEEEccC-CCEEEEEeeCCCCceeEEEEeCCCCc
Q 001386 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSAN-GRRLFSCGTSKEGESFLVEWNESEGA 566 (1088)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~-g~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1088)
+++|++.. ..++++++.||+|++||+++.+....+. .+...+.+++|+|+ ++++++++. ++.|++||+++++
T Consensus 174 ~~~~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~~ 248 (344)
T 4gqb_B 174 CVAASPHK-DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKSTS 248 (344)
T ss_dssp EEEECSSC-TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC--
T ss_pred EEEecCCC-CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCCc
Confidence 99996643 2588999999999999999988877654 34557899999995 456777764 5679999999999
Q ss_pred eeEEEeccccccccEEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCC-EEEEEeCCC
Q 001386 567 IKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANEN 644 (1088)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg 644 (1088)
.+..+.+|. ..|.+++|+|++ ++|++|+.|++|++||+.+++++. +..| ...|.+++|+|+++ +|++++.|+
T Consensus 249 ~~~~~~~h~---~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H--~~~V~~v~~sp~~~~llas~s~D~ 322 (344)
T 4gqb_B 249 CVLSSAVHS---QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAH--RDFVRDATWSPLNHSLLTTVGWDH 322 (344)
T ss_dssp CCEEEECCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCC--SSCEEEEEECSSSTTEEEEEETTS
T ss_pred EEEEEcCCC---CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCC--CCCEEEEEEeCCCCeEEEEEcCCC
Confidence 999999988 899999999998 578999999999999999987654 4444 44799999999886 677999999
Q ss_pred cEEEEeCCCCC
Q 001386 645 RIKILETPESN 655 (1088)
Q Consensus 645 ~i~iwd~~~~~ 655 (1088)
+|++|++.+..
T Consensus 323 ~v~~w~v~~~~ 333 (344)
T 4gqb_B 323 QVVHHVVPTEP 333 (344)
T ss_dssp CEEEEECCC--
T ss_pred eEEEEECCCCC
Confidence 99999998653
No 27
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.6e-38 Score=349.65 Aligned_cols=314 Identities=16% Similarity=0.216 Sum_probs=229.1
Q ss_pred ccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEecc------ccceEEEEccCCCCCCCCCC
Q 001386 701 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS------NGVHLMWRWPRNDLTLSTEV 774 (1088)
Q Consensus 701 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~------dg~v~iw~~~~~~~~~~~~~ 774 (1088)
++.+..+.....|++....+ ..|...|.+++|+|||++|++++. |+.+++|+..
T Consensus 19 ~~~~~g~~~~~~w~~p~~~p----------~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~---------- 78 (357)
T 4g56_B 19 YFQSNGSSKGSAWGRPVTAP----------ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDP---------- 78 (357)
T ss_dssp -------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSC----------
T ss_pred EEecCCCccccccCCCCCCc----------ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECC----------
Confidence 34445556778888643221 248889999999999999999987 4555555543
Q ss_pred CCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEE----EecCCCCCeEEEEEcCC
Q 001386 775 PPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL----TIMPPSPTATSLAFNPH 850 (1088)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~l~~sp~ 850 (1088)
++...........+|...|.+++|+|++.+++++.+|+|+|||+.+++... ...+|...|++++|+|
T Consensus 79 --------~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp- 149 (357)
T 4g56_B 79 --------EGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS- 149 (357)
T ss_dssp --------C---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-
T ss_pred --------CCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-
Confidence 332221111112247888999999999988877779999999999877543 3457899999999999
Q ss_pred CCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCc
Q 001386 851 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM 929 (1088)
Q Consensus 851 d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~-~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 929 (1088)
++++|++|+.||.|++||+.+++++..+.+|.+.|++++|+|++. ++++++.||+|++||+.+++..... ....+.
T Consensus 150 dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~---~~~~~~ 226 (357)
T 4g56_B 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI---DFCASD 226 (357)
T ss_dssp SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC---CCTTCC
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee---eecccc
Confidence 899999999999999999999999999999999999999999885 7899999999999999886532211 111222
Q ss_pred cCCCCeEEEEEcCCC-CEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCC-CEEEEEeCCCcEEEEEcCCC
Q 001386 930 TLAPSETHIQFHKDQ-TRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNL 1006 (1088)
Q Consensus 930 ~~~~~v~~~~fs~dg-~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~s~s~dg~v~vwd~~~~ 1006 (1088)
..+.+++|+|++ .+|++ +.|+.|++||+.+++++.. +.+|...|.+++|+|++ ++|++|+.||+|+|||+.++
T Consensus 227 ---~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~ 302 (357)
T 4g56_B 227 ---TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT-SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS 302 (357)
T ss_dssp ---SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE-ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC
T ss_pred ---ccccchhhhhcccceEEEeecccceeEEECCCCcEeEE-EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC
Confidence 368999999985 56777 4789999999999998877 55899999999999987 57999999999999999999
Q ss_pred ceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 001386 1007 EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1061 (1088)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~~ 1061 (1088)
+++..+. + .-...+++|+|.|+.+|++++.||+|++|++...+.
T Consensus 303 ~~~~~~~------H-----~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 303 EVFRDLS------H-----RDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp EEEEECC------C-----SSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred cEeEECC------C-----CCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 8775432 1 124567999997889999999999999999976553
No 28
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=342.65 Aligned_cols=297 Identities=12% Similarity=0.156 Sum_probs=225.8
Q ss_pred ccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCE
Q 001386 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 812 (1088)
Q Consensus 733 ~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 812 (1088)
+...|.+++|+|||++|++++ |+.+++|+... .+|+................+...|.+++|+|++.+
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l 96 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSL-----------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGI 96 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEE-----------EEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEE
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeecee-----------eeeccccccCCcceeeeeeccCCCEEEEEEeCCCeE
Confidence 556799999999999777665 77788886321 111111000000000000125678999999999755
Q ss_pred EEEEeCCcEEEEEcCCceeEEE----ecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEE
Q 001386 813 LFSASGGVISLYIVMTFKTILT----IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 888 (1088)
Q Consensus 813 l~~~~dg~i~iwd~~~~~~~~~----~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l 888 (1088)
++.+.||+|+|||+.+++.+.. +.+|...|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.+.|+++
T Consensus 97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~ 175 (344)
T 4gqb_B 97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCV 175 (344)
T ss_dssp EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEE
Confidence 4444499999999998876543 448999999999999 89999999999999999999999999999999999999
Q ss_pred EECCCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCC-CCEEEE-EeCCeEEEEEcCccee
Q 001386 889 VFSDAL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD-QTRFLL-VHETHLAIYEAEELTC 965 (1088)
Q Consensus 889 ~~s~dg-~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d-g~~l~~-~~d~~i~vwd~~~~~~ 965 (1088)
+|+|++ .+|++++.|++|++||+.+++..... .. ..+. ..+.+++|+|+ +++|++ +.|+.|++||+.++++
T Consensus 176 ~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~--~~-~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~ 249 (344)
T 4gqb_B 176 AASPHKDSVFLSCSEDNRILLWDTRCPKPASQI--GC-SAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC 249 (344)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTSSSCEEEC--C-----C---CCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C
T ss_pred EecCCCCCceeeeccccccccccccccceeeee--ec-ceee---ccceeeeecCCCCcceEEeccCCcEEEEECCCCcE
Confidence 999998 47899999999999999986533211 11 1111 25889999995 567777 4689999999999999
Q ss_pred eeeeecCCCcCEEEEEEeeCC-CEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEE
Q 001386 966 LKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV 1044 (1088)
Q Consensus 966 ~~~~~~~h~~~v~~l~fs~dg-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~ 1044 (1088)
+.. +.+|...|++++|+||| ++|++|+.|++|+|||+.++++.. .. . +.-...+++|+|++..+|++
T Consensus 250 ~~~-~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~-----~-----H~~~V~~v~~sp~~~~llas 317 (344)
T 4gqb_B 250 VLS-SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ-----A-----HRDFVRDATWSPLNHSLLTT 317 (344)
T ss_dssp CEE-EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC-----C-----CSSCEEEEEECSSSTTEEEE
T ss_pred EEE-EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec-----C-----CCCCEEEEEEeCCCCeEEEE
Confidence 887 45899999999999998 579999999999999999998653 22 1 11345789999955567889
Q ss_pred EeCCCcEEEEeCCCCC
Q 001386 1045 GLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 1045 ~~~dg~v~~w~l~~~~ 1060 (1088)
++.||+|++|++....
T Consensus 318 ~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 318 VGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EETTSCEEEEECCC--
T ss_pred EcCCCeEEEEECCCCC
Confidence 9999999999997643
No 29
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.9e-37 Score=347.89 Aligned_cols=318 Identities=17% Similarity=0.156 Sum_probs=262.0
Q ss_pred EEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCE
Q 001386 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636 (1088)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 636 (1088)
+..|+.....+.+.+.+|. +.|.+++|+|++++|++|+.||+|++||..+++....+..|.. .|.+++|+|++++
T Consensus 48 ~~~~~~~~~~~~~~l~gH~---~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~--~v~~~~~s~~g~~ 122 (380)
T 3iz6_a 48 AVSFNPTDLVCCRTLQGHS---GKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCP--WVMECAFAPNGQS 122 (380)
T ss_dssp CCCCCCCCCEEEEEECCCS---SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCT--TCCCCEECTTSSE
T ss_pred ccccccceeEEeecccccc---cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCC--CEEEEEECCCCCE
Confidence 4457777788888999998 9999999999999999999999999999999999999987654 6899999999999
Q ss_pred EEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceecccc
Q 001386 637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1088)
Q Consensus 637 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 716 (1088)
|++++.|+.+++|++.+..... +...
T Consensus 123 las~~~d~~v~iw~~~~~~~~~---------------------------------------~~~~--------------- 148 (380)
T 3iz6_a 123 VACGGLDSACSIFNLSSQADRD---------------------------------------GNMP--------------- 148 (380)
T ss_dssp EEECCSSSCCEEEECCCCSSCC---------------------------------------CSST---------------
T ss_pred EEEeeCCCcEEEEECCCCcccc---------------------------------------CCcc---------------
Confidence 9999999999999987431100 0000
Q ss_pred ccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCC
Q 001386 717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSN 796 (1088)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1088)
....+ .+
T Consensus 149 -----------------------------------------------------------------------~~~~~--~g 155 (380)
T 3iz6_a 149 -----------------------------------------------------------------------VSRVL--TG 155 (380)
T ss_dssp -----------------------------------------------------------------------TCCBC--CC
T ss_pred -----------------------------------------------------------------------ceeec--cC
Confidence 00000 13
Q ss_pred CCCCeeEEEEecC-CCEEEEEe-CCcEEEEEcCCceeEEEe-----cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 001386 797 SQEAVPCFALSKN-DAYLFSAS-GGVISLYIVMTFKTILTI-----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 869 (1088)
Q Consensus 797 ~~~~v~~~~~s~d-g~~l~~~~-dg~i~iwd~~~~~~~~~~-----~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~ 869 (1088)
|...+.++.|+|+ +..|++++ |++|++||+.+++.+..+ .+|...|.+++|++.++.++++|+.||+|++||+
T Consensus 156 h~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~ 235 (380)
T 3iz6_a 156 HKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDL 235 (380)
T ss_dssp CSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEET
T ss_pred CCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEEC
Confidence 6777778888886 45688887 899999999999998877 5788999999998767899999999999999999
Q ss_pred C-CceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEE
Q 001386 870 R-SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 948 (1088)
Q Consensus 870 ~-~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~ 948 (1088)
+ +++.+..+.+|.+.|.+++|+|++++|++++.||+|++||+.+++......... .........|.+++|+|+|++|+
T Consensus 236 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~ 314 (380)
T 3iz6_a 236 RITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREP-DRNDNELPIVTSVAFSISGRLLF 314 (380)
T ss_dssp TTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCC-SSSCCSSCSCSEEEECSSSSEEE
T ss_pred CCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccc-cccccccCceEEEEECCCCCEEE
Confidence 8 457888999999999999999999999999999999999999876432211110 00011113589999999999999
Q ss_pred EE-eCCeEEEEEcCcceeeeee---ecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCc
Q 001386 949 LV-HETHLAIYEAEELTCLKQW---FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1007 (1088)
Q Consensus 949 ~~-~d~~i~vwd~~~~~~~~~~---~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~ 1007 (1088)
++ .|+.|++||+.+++.+..+ ..+|...|.+++|+|||++|++|+.||+|++|++....
T Consensus 315 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 315 AGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 95 7899999999999887664 26799999999999999999999999999999998764
No 30
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.2e-37 Score=351.66 Aligned_cols=327 Identities=15% Similarity=0.218 Sum_probs=266.9
Q ss_pred cCCCCCeEEEEECCCCC-EEEEEeCCCEEEEEEc----cCCCccc---ceeEecc----------CCCCEEEEEecCCCC
Q 001386 393 RDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAY----HGGSDAR---QQLEIDA----------HVGNVNDLAFSAPCK 454 (1088)
Q Consensus 393 ~~h~~~V~~l~~s~dg~-~las~~~dg~i~vwd~----~~~~~~~---~~~~~~~----------h~~~v~~~~~s~d~~ 454 (1088)
..|.+.|.+++|+|+|+ +||+|+.||.|++||+ .+++.+. ....+.. |...|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 34779999999999999 9999999999999999 8876200 1112222 688999999999999
Q ss_pred cEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCc---
Q 001386 455 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG--- 531 (1088)
Q Consensus 455 ~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--- 531 (1088)
+|++++.|+.|++|| .+++.+..+.+|...|.+++|++ ++.+|++++.||.|++||+.+.+....+..+...
T Consensus 122 --~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 196 (425)
T 1r5m_A 122 --SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS 196 (425)
T ss_dssp --EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred --EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence 899999999999999 78889999999999999999954 6789999999999999999998888877777666
Q ss_pred ------------eEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC
Q 001386 532 ------------CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD 599 (1088)
Q Consensus 532 ------------v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d 599 (1088)
+.+++|++++. +++++. ++.|++||+.+++.+..+..|. ..|.+++|+|+++++++++.|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~g~i~~~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~d 268 (425)
T 1r5m_A 197 INAENHSGDGSLGVDVEWVDDDK-FVIPGP----KGAIFVYQITEKTPTGKLIGHH---GPISVLEFNDTNKLLLSASDD 268 (425)
T ss_dssp ---------CCCBSCCEEEETTE-EEEECG----GGCEEEEETTCSSCSEEECCCS---SCEEEEEEETTTTEEEEEETT
T ss_pred eeeccccCCcceeeEEEEcCCCE-EEEEcC----CCeEEEEEcCCCceeeeeccCC---CceEEEEECCCCCEEEEEcCC
Confidence 89999999865 555554 5569999999999999998887 899999999999999999999
Q ss_pred CcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcce
Q 001386 600 HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 679 (1088)
Q Consensus 600 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 679 (1088)
+.|++||+.+++.+..+..
T Consensus 269 ~~i~i~d~~~~~~~~~~~~------------------------------------------------------------- 287 (425)
T 1r5m_A 269 GTLRIWHGGNGNSQNCFYG------------------------------------------------------------- 287 (425)
T ss_dssp SCEEEECSSSBSCSEEECC-------------------------------------------------------------
T ss_pred CEEEEEECCCCccceEecC-------------------------------------------------------------
Confidence 9999999887633332221
Q ss_pred eccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceE
Q 001386 680 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 759 (1088)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~ 759 (1088)
T Consensus 288 -------------------------------------------------------------------------------- 287 (425)
T 1r5m_A 288 -------------------------------------------------------------------------------- 287 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCC
Q 001386 760 MWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPP 838 (1088)
Q Consensus 760 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~ 838 (1088)
|...|.+++|+|++ ++++++ ++.|++||+.+++.+..+..|
T Consensus 288 -------------------------------------~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 329 (425)
T 1r5m_A 288 -------------------------------------HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVD 329 (425)
T ss_dssp -------------------------------------CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECT
T ss_pred -------------------------------------CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccC
Confidence 33345555566665 555554 566666666666666777778
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce--------------------eeeeeccccC--CeeEEEECCCCCE
Q 001386 839 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE--------------------VISKLEGHSK--RVTGLVFSDALNI 896 (1088)
Q Consensus 839 ~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~--------------------~~~~l~~h~~--~V~~l~~s~dg~~ 896 (1088)
...+.+++|+| ++++|++++.||.|++||+.+++ .+..+.+|.. .|.+++|+|++++
T Consensus 330 ~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 408 (425)
T 1r5m_A 330 GVPIFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNK 408 (425)
T ss_dssp TCCEEEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSE
T ss_pred CccEEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCce
Confidence 88899999999 78899999999999999998888 8899999977 9999999999999
Q ss_pred EEEEeCCCcEEEEEcC
Q 001386 897 LVSSGGDAQIFVWDVD 912 (1088)
Q Consensus 897 las~s~Dg~i~iwd~~ 912 (1088)
|++++.||.|++||++
T Consensus 409 l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 409 ISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEESSSCCEEEECC
T ss_pred EEEEecCceEEEEeec
Confidence 9999999999999986
No 31
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.8e-36 Score=332.33 Aligned_cols=291 Identities=12% Similarity=0.232 Sum_probs=243.4
Q ss_pred eeEEEeccccccccEEEEEEeCCC-CEEEEEeCCCcEEEEEcCC-----CeeeEEEeCCCCCCCCceEEEecCCCEEEEE
Q 001386 567 IKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNK-----VQLLTTIDAGGGLPENPRICFNKNGTLLAVI 640 (1088)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 640 (1088)
+..++.+|. +.|.+++|+|++ ++|++++.|++|++|++.. +.++..+..|.. .|.+++|+|++++|+++
T Consensus 9 l~~~l~gH~---~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~s~ 83 (319)
T 3frx_A 9 LRGTLEGHN---GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH--IVQDCTLTADGAYALSA 83 (319)
T ss_dssp EEEEECCCS---SCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSS--CEEEEEECTTSSEEEEE
T ss_pred EEEEEcccc---ceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcc--cEEEEEECCCCCEEEEE
Confidence 455778888 999999999965 8999999999999999864 345566776644 68999999999999999
Q ss_pred eCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCC
Q 001386 641 ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP 720 (1088)
Q Consensus 641 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~ 720 (1088)
+.|++|++||+.+++.+..+.
T Consensus 84 s~D~~v~~wd~~~~~~~~~~~----------------------------------------------------------- 104 (319)
T 3frx_A 84 SWDKTLRLWDVATGETYQRFV----------------------------------------------------------- 104 (319)
T ss_dssp ETTSEEEEEETTTTEEEEEEE-----------------------------------------------------------
T ss_pred eCCCEEEEEECCCCCeeEEEc-----------------------------------------------------------
Confidence 999999999987553221110
Q ss_pred CcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCC
Q 001386 721 SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEA 800 (1088)
Q Consensus 721 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1088)
+|...
T Consensus 105 ---------------------------------------------------------------------------~h~~~ 109 (319)
T 3frx_A 105 ---------------------------------------------------------------------------GHKSD 109 (319)
T ss_dssp ---------------------------------------------------------------------------CCSSC
T ss_pred ---------------------------------------------------------------------------cCCCc
Confidence 26677
Q ss_pred eeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCC-----CCcEEEEEeCCCeEEEEEcCCcee
Q 001386 801 VPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH-----DNNVIAIGMDDSTILIYNARSSEV 874 (1088)
Q Consensus 801 v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~-----d~~~lasg~~dg~i~lwd~~~~~~ 874 (1088)
|.+++|+|++.++++++ |++|++||+. ++.+..+.+|...|.+++|+|. ++.++++|+.|+.|++||+.+++.
T Consensus 110 v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 188 (319)
T 3frx_A 110 VMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188 (319)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh
Confidence 88888888888888887 7888888886 5667788899999999999983 234899999999999999999999
Q ss_pred eeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCe
Q 001386 875 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH 954 (1088)
Q Consensus 875 ~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~ 954 (1088)
...+.+|...|.+++|+|+|++|++++.||+|++||+.+++.. .....+ ..|.+++|+|++.+|+++.++.
T Consensus 189 ~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~----~~v~~~~~sp~~~~la~~~~~~ 259 (319)
T 3frx_A 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM-----YTLSAQ----DEVFSLAFSPNRYWLAAATATG 259 (319)
T ss_dssp EEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE-----EEEECC----SCEEEEEECSSSSEEEEEETTE
T ss_pred heeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE-----EEecCC----CcEEEEEEcCCCCEEEEEcCCC
Confidence 9999999999999999999999999999999999999986532 222222 2599999999999999998999
Q ss_pred EEEEEcCcceeeeeee-------cCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC
Q 001386 955 LAIYEAEELTCLKQWF-------PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1006 (1088)
Q Consensus 955 i~vwd~~~~~~~~~~~-------~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~ 1006 (1088)
+++|++..+..+..+. ..|...+.+++|||||++|++|+.||+|+|||+.++
T Consensus 260 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 260 IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred cEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 9999999887766543 234678999999999999999999999999998775
No 32
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=1.3e-35 Score=379.40 Aligned_cols=523 Identities=13% Similarity=0.057 Sum_probs=378.0
Q ss_pred CCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEE
Q 001386 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1088)
Q Consensus 333 h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~la 412 (1088)
+...+.+++|||+ + ||..+. +.|++|++.+++... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~--~-iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD--R-IIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT--E-EEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC--E-EEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 3457899999964 3 454444 789999998886543 667999999999999999999
Q ss_pred EEeCC------CEEEEEEccCCCcccceeEeccCCCCE-------EEEEecCCCCcEEEEEEeCC------CcEEEEeCC
Q 001386 413 VAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNV-------NDLAFSAPCKQISVITCGDD------KTIKVWDAV 473 (1088)
Q Consensus 413 s~~~d------g~i~vwd~~~~~~~~~~~~~~~h~~~v-------~~~~~s~d~~~l~l~s~s~d------~~i~vwd~~ 473 (1088)
+++.+ ..|++||+.+++. ..+..|...+ ..++|+|||+ ++++++.+ ..|.+||+.
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~----~~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEI----KRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEE----EECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCe----EEcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88653 3799999988752 2577888888 9999999998 67777754 358888887
Q ss_pred CCceeEEeccCCccEEEEeeeeeCCceEEEEEec------------CCeEEEEECCCCCceEEecCCCCceEEEEEccCC
Q 001386 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV------------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG 541 (1088)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g 541 (1088)
+++.. .+..+. ...++|+ + | ++++++. +...++|..........+..+...+.++.|+++
T Consensus 143 ~g~~~-~l~~~~--~~~~~~s--p-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d- 214 (1045)
T 1k32_A 143 GINFV-PLNLGP--ATHILFA--D-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH- 214 (1045)
T ss_dssp GTEEE-ECCSCS--CSEEEEE--T-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-
T ss_pred CCCeE-EecCCC--cceeeeC--C-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-
Confidence 77654 333332 2345564 4 5 7787753 345667754444555556788889999999988
Q ss_pred CEEEEEeeCCCCceeEEEEeCCC-CceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCC
Q 001386 542 RRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620 (1088)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 620 (1088)
..++++.. ++.+.+|.... +.....+..+. .+...+|+|+|++++.+. ++.|++|++... .+..+..+.
T Consensus 215 ~l~~~~~~----dg~~~l~~~~~~g~~~~~l~~~~----~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~ 284 (1045)
T 1k32_A 215 RIYFITDI----DGFGQIYSTDLDGKDLRKHTSFT----DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGD 284 (1045)
T ss_dssp EEEEEECT----TSSCEEEEEETTSCSCEECCCCC----SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEECCCCC
T ss_pred EEEEEEec----cCceEEEEEeCCCCcceEecCCC----CcceeeEcCCCCEEEEEe-CCEEEEecCCce-EeeeeccCc
Confidence 44444432 23355565432 33445555444 355679999999998874 899999999544 344444321
Q ss_pred ---------CCCCCceEEEe-cCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceee
Q 001386 621 ---------GLPENPRICFN-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 690 (1088)
Q Consensus 621 ---------~~~~v~~v~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~ 690 (1088)
+...+.+++|+ |||+.+++++ ++.+.+|+...+.... +.
T Consensus 285 ~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~----------------------------- 333 (1045)
T 1k32_A 285 LESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VP----------------------------- 333 (1045)
T ss_dssp CCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CS-----------------------------
T ss_pred ccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-cc-----------------------------
Confidence 11247899999 9999999888 7889999877543211 00
Q ss_pred cCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccc-cEEEEEEecCCceEEEeccccceE-EEEccCCCC
Q 001386 691 NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN-KISRLTYNNGGQAIFALASNGVHL-MWRWPRNDL 768 (1088)
Q Consensus 691 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~g~~l~~~~~dg~v~-iw~~~~~~~ 768 (1088)
.+.. .+..++|+ +|+.++.++.++.+. +|++....
T Consensus 334 -----------------------------------------~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~- 370 (1045)
T 1k32_A 334 -----------------------------------------EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK- 370 (1045)
T ss_dssp -----------------------------------------CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC-
T ss_pred -----------------------------------------CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC-
Confidence 1233 67788999 999898888777676 77654321
Q ss_pred CCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEE
Q 001386 769 TLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAF 847 (1088)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~ 847 (1088)
... +. ++...+..++|||||++|++++ ++.|++||+.+++....+..|...+.+++|
T Consensus 371 ------------------~~~--l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~ 428 (1045)
T 1k32_A 371 ------------------AEK--FE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTI 428 (1045)
T ss_dssp ------------------EEE--CC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEE
T ss_pred ------------------ceE--ec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEE
Confidence 111 11 3667899999999999999987 789999999999988888788899999999
Q ss_pred cCCCCcEEEEEeCCC----------eEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCcee
Q 001386 848 NPHDNNVIAIGMDDS----------TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ 917 (1088)
Q Consensus 848 sp~d~~~lasg~~dg----------~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~ 917 (1088)
|| |+++|++++.++ .|++||+.+++ +..+..|...+..++|+|||++|++++.++...+|+.......
T Consensus 429 Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~ 506 (1045)
T 1k32_A 429 SD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFS 506 (1045)
T ss_dssp CT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEE
T ss_pred CC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccc
Confidence 99 899888887654 99999999988 6778889888999999999999999999888888876533210
Q ss_pred ee-----eee--e---------------------cCCCC-------ccCCCCeEEEEEcCCCCEEEE------------E
Q 001386 918 TC-----RSL--Q---------------------TPDGV-------MTLAPSETHIQFHKDQTRFLL------------V 950 (1088)
Q Consensus 918 ~~-----~~~--~---------------------~~~~~-------~~~~~~v~~~~fs~dg~~l~~------------~ 950 (1088)
.. ..+ . ...+. ......+..++|+|||+++++ +
T Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~ 586 (1045)
T 1k32_A 507 FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQG 586 (1045)
T ss_dssp CCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHC
T ss_pred cccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccc
Confidence 00 000 0 00010 001235789999999998875 1
Q ss_pred --eCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCc
Q 001386 951 --HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1007 (1088)
Q Consensus 951 --~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~ 1007 (1088)
....+.+||+.+++.... . ..+..++|||||++|++++.+ .|++||+.+++
T Consensus 587 ~~~~~~l~~~d~~~~~~~~l-~----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 587 APEKGVLLKYDVKTRKVTEV-K----NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp CCCCEEEEEEETTTCCEEEE-E----EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred cCCCceEEEEECCCCcEEEe-e----cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 234789999998875433 2 568899999999999998866 89999999887
No 33
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1e-36 Score=338.36 Aligned_cols=301 Identities=17% Similarity=0.273 Sum_probs=244.6
Q ss_pred hheeecccCCCCceeeee-----cC-CCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCC
Q 001386 325 TVAQTLIEGSSSPMSMDF-----HP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~-----sp-dg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~ 398 (1088)
.+..+|.+|++.|++++| +| |++ +|++|+.|++|+|||+.+++..... ......+.+|...
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~~------------~~~~~~l~~h~~~ 78 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYF------------GIPHKALTGHNHF 78 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSBS------------EEEEEEECCCSSC
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCccccc------------ccccchhccCCCc
Confidence 456789999999999999 77 888 7999999999999999875432110 0112237899999
Q ss_pred eEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001386 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1088)
Q Consensus 399 V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~ 478 (1088)
|.+++|+|++.+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ ++++++.|++|++||+. +...
T Consensus 79 V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~-~~~~ 152 (343)
T 2xzm_R 79 VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNIL-GECK 152 (343)
T ss_dssp EEEEEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESS-SCEE
T ss_pred eEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEecc-CCce
Confidence 9999999999999999999999999999987655 6889999999999999999 89999999999999987 4444
Q ss_pred EEec---cCCccEEEEeeeeeCC--------ceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001386 479 YSFE---GHGAPVYSLCPHAKEN--------IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1088)
Q Consensus 479 ~~~~---~~~~~v~~~~~~~~~~--------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 547 (1088)
.... +|...|.+++|++... +.++++++.||.|++||. .......+..|...|.+++|+|+|++|+++
T Consensus 153 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sg 231 (343)
T 2xzm_R 153 FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATG 231 (343)
T ss_dssp EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEE
Confidence 4433 7889999999976431 268999999999999994 445566778899999999999999999999
Q ss_pred eeCCCCceeEEEEeCC-CCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeE--EEeCC-----
Q 001386 548 GTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--TIDAG----- 619 (1088)
Q Consensus 548 ~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~~~~~----- 619 (1088)
+. ++.|++||+. .......+. +. ..|.+++|+|++.++++ +.|+.|++|++.+++... .+...
T Consensus 232 s~----dg~v~iwd~~~~~~~~~~~~-~~---~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~ 302 (343)
T 2xzm_R 232 GK----DKKLLIWDILNLTYPQREFD-AG---STINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKA 302 (343)
T ss_dssp ET----TCEEEEEESSCCSSCSEEEE-CS---SCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGB
T ss_pred cC----CCeEEEEECCCCcccceeec-CC---CcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhh
Confidence 86 5679999994 444444443 22 56999999999887765 457889999998876554 33311
Q ss_pred ----CCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 001386 620 ----GGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 620 ----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
++...+.+++|+|+|++|++|+.||.|++|++.++
T Consensus 303 ~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 303 EGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp TTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred hhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 23446889999999999999999999999998643
No 34
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.6e-36 Score=343.58 Aligned_cols=303 Identities=15% Similarity=0.236 Sum_probs=247.3
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEE
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 411 (1088)
+|.+.|.+++|||||+ +||+|+ +++++||++.+|+.+.......-. ..............+...|.+++|+|||++|
T Consensus 62 ~h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAA-NKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp ECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEE
T ss_pred CCCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEecCcccc-ccccccccccccCCCceeEEEEEECCCCCEE
Confidence 6999999999999999 688876 689999999999876542110000 0000000111112344569999999999999
Q ss_pred EEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEE
Q 001386 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1088)
Q Consensus 412 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 491 (1088)
|+|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ .+++++.|++|++||+.++++...+. +...+.++
T Consensus 139 ~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp EEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred EEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 999999999999999886544 6889999999999999999 89999999999999999999888776 56778999
Q ss_pred eeeeeCCceEEEEEecCCeEEEEECCCCCceEEe-------cCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC
Q 001386 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1088)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 564 (1088)
++++. ++.++++++.||.|++||++++.....+ ..|...|.+++|+|+|++|++++. ++.|++||+.+
T Consensus 213 ~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~~wd~~~ 287 (393)
T 1erj_A 213 AVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKLWNLQN 287 (393)
T ss_dssp EECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEEEEC--
T ss_pred EEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEEEEECCC
Confidence 88652 6789999999999999999988776655 467789999999999999999976 55699999875
Q ss_pred C------------ceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec
Q 001386 565 G------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1088)
Q Consensus 565 ~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1088)
. .+...+.+|. ..|.+++|+|++.++++++.|+.|++||..+++.+..+..|.. .|.+++|++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~--~v~~v~~~~ 362 (393)
T 1erj_A 288 ANNKSDSKTPNSGTCEVTYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISVAVAN 362 (393)
T ss_dssp -------------CEEEEEECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECS
T ss_pred CCCcccccCCCCCcceEEEeccc---CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC--CEEEEEecC
Confidence 3 3455667777 8899999999999999999999999999999999999987754 689999886
Q ss_pred ------CCCEEEEEeCCCcEEEEeCCC
Q 001386 633 ------NGTLLAVIANENRIKILETPE 653 (1088)
Q Consensus 633 ------~~~~l~~~~~dg~i~iwd~~~ 653 (1088)
++++|++|+.||+|++|++..
T Consensus 363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 363 GSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CcCcCCCCCEEEEECCCCcEEECcccc
Confidence 688999999999999999764
No 35
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-37 Score=352.70 Aligned_cols=345 Identities=13% Similarity=0.174 Sum_probs=282.0
Q ss_pred eeecc--cCCCCceeeeecCCCCeEEEEEcccCcEEEEec----CCCcceeeeceeeeeeccccccce-eeeecCCCCCe
Q 001386 327 AQTLI--EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDV----NSGQKLFIRNFKVWDIGACSMLFK-TALVRDPGVSV 399 (1088)
Q Consensus 327 ~~~l~--~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~----~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~h~~~V 399 (1088)
.+.+. .|.+.|++++|+|+|+.+||+|+.||.|+|||+ .+++.+...... .. ....+. .....+|.+.|
T Consensus 36 ~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~v 111 (425)
T 1r5m_A 36 VKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTII-AE---LRHPFALSASSGKTTNQV 111 (425)
T ss_dssp CEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEE-EE---EECCCCCC------CBCE
T ss_pred hhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccc-cc---ccccccccccccCCCCce
Confidence 34444 455899999999999845899999999999999 888732110000 00 000000 00123378899
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001386 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1088)
Q Consensus 400 ~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~ 479 (1088)
.+++|+|++++|++++.||.|++|| .+++.+. .+.+|...|.+++|+|+++ ++++++.|+.|++||+.+++.+.
T Consensus 112 ~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 112 TCLAWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQ 185 (425)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEE
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEE
Confidence 9999999999999999999999999 4444333 6789999999999999999 89999999999999999999999
Q ss_pred EeccCCcc---------------EEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEE
Q 001386 480 SFEGHGAP---------------VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 544 (1088)
Q Consensus 480 ~~~~~~~~---------------v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 544 (1088)
.+..+... +.+++|.+. ..+++++.||.|++||++.......+..+...|.+++|+|++++|
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 262 (425)
T 1r5m_A 186 HFELKETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLL 262 (425)
T ss_dssp EECCC---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEE
T ss_pred EeeccccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEE
Confidence 99888776 888888653 368999999999999999998888888999999999999999999
Q ss_pred EEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCC
Q 001386 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 624 (1088)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 624 (1088)
++++. ++.|++||+.+++.+..+.+|. ..+.+++|+|++ .+++++.|+.|++||+.+++.+..+..+.. .
T Consensus 263 ~~~~~----d~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~ 332 (425)
T 1r5m_A 263 LSASD----DGTLRIWHGGNGNSQNCFYGHS---QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV--P 332 (425)
T ss_dssp EEEET----TSCEEEECSSSBSCSEEECCCS---SCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC--C
T ss_pred EEEcC----CCEEEEEECCCCccceEecCCC---ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc--c
Confidence 99975 4559999999999999998877 899999999999 999999999999999999999999886644 6
Q ss_pred CceEEEecCCCEEEEEeCCCcEEEEeCCCCC--------------------cccccccccC--cceeeeecCCCcceecc
Q 001386 625 NPRICFNKNGTLLAVIANENRIKILETPESN--------------------SVDAAGVLSD--NLRKLSVNPISTVTGAG 682 (1088)
Q Consensus 625 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~--------------------~~~~~~~~~~--~v~~~~~~p~~~~~~~~ 682 (1088)
+.+++|+|++++|++++.||.|++|++.++. .+..+..|.. .|.+++|+
T Consensus 333 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--------- 403 (425)
T 1r5m_A 333 IFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWN--------- 403 (425)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEEC---------
T ss_pred EEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEcc---------
Confidence 8999999999999999999999999999877 6677777765 88888887
Q ss_pred ccCCceeecCCCCCCCCcccccccCccceecccc
Q 001386 683 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1088)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 716 (1088)
++++++++++.|+.+++|++.
T Consensus 404 -------------~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 404 -------------CAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp -------------TTSSEEEEEESSSCCEEEECC
T ss_pred -------------CCCceEEEEecCceEEEEeec
Confidence 678889999999999999964
No 36
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.3e-36 Score=336.37 Aligned_cols=287 Identities=15% Similarity=0.172 Sum_probs=260.4
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+.+|...|.+++|+||+++||+|+.||+|++||..+++... .+..|...|.+++|+|++. .+++++.|+.+++|+
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVYP 134 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEEE
Confidence 77899999999999999999999999999999999886544 5778999999999999999 899999999999999
Q ss_pred CCCC------ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEcc--CCCE
Q 001386 472 AVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--NGRR 543 (1088)
Q Consensus 472 ~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~--~g~~ 543 (1088)
+... .....+.+|...|.+++|++ ++..|++++.||+|++||+++++....+..|...|.+++|+| +|++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 8654 34567888999999999954 667999999999999999999999999999999999999987 5789
Q ss_pred EEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCC
Q 001386 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1088)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1088)
+++++. ++.|++||+++++.+..+.+|. ..|.+++|+|+++++++++.|++|++||+.+++.+..+..+....
T Consensus 213 l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~ 285 (354)
T 2pbi_B 213 FVSGGC----DKKAMVWDMRSGQCVQAFETHE---SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIF 285 (354)
T ss_dssp EEEEET----TSCEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS
T ss_pred EEEEeC----CCeEEEEECCCCcEEEEecCCC---CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCccc
Confidence 999986 4559999999999999999888 899999999999999999999999999999998888776655444
Q ss_pred CCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccc
Q 001386 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1088)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 703 (1088)
.+.+++|+|+++++++++.|+.|++||+.++..+..+.+|...|.+++|+ |+++++++
T Consensus 286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~s----------------------pdg~~l~s 343 (354)
T 2pbi_B 286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS----------------------PDGTAFCS 343 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC----------------------TTSSCEEE
T ss_pred ceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEEC----------------------CCCCEEEE
Confidence 67899999999999999999999999999999888999999999999997 67889999
Q ss_pred cccCccceecc
Q 001386 704 VEAENKSEVEK 714 (1088)
Q Consensus 704 ~~~d~~i~vw~ 714 (1088)
++.|+++++|+
T Consensus 344 gs~D~~v~vW~ 354 (354)
T 2pbi_B 344 GSWDHTLRVWA 354 (354)
T ss_dssp EETTSEEEEEC
T ss_pred EcCCCCEEecC
Confidence 99999999996
No 37
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-36 Score=335.61 Aligned_cols=296 Identities=17% Similarity=0.204 Sum_probs=233.5
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeee-c-CCCCCeEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV-R-DPGVSVNRV 402 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~-~h~~~V~~l 402 (1088)
.++++|.+|++.|++++|+|+ +||+|+.|++|+|||+.++...... .+ . +|...|.++
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~-----------------~~~~~~h~~~v~~v 64 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLID-----------------VLDETAHKKAIRSV 64 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEE-----------------EECTTCCCSCEEEE
T ss_pred ccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEE-----------------EEecCCccCCEEEE
Confidence 456789999999999999997 6899999999999999876421110 13 3 399999999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEccCCC----cccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC-C--
Q 001386 403 VWSPDGSLLGVAYSKHIVQLYAYHGGS----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-G-- 475 (1088)
Q Consensus 403 ~~s~dg~~las~~~dg~i~vwd~~~~~----~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~-~-- 475 (1088)
+|+|++++||+|+.|++|++||+..+. .......+.+|...|.+++|+|+++ +|++|+.|++|++||+.. +
T Consensus 65 ~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~ 142 (330)
T 2hes_X 65 AWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEE 142 (330)
T ss_dssp EECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCC
T ss_pred EECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCC
Confidence 999999999999999999999996432 1233446889999999999999999 899999999999999943 2
Q ss_pred -ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCC--CceEEecCCCCceEEEEEccC--CCEEEEEeeC
Q 001386 476 -SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSAN--GRRLFSCGTS 550 (1088)
Q Consensus 476 -~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~--g~~l~~~~~~ 550 (1088)
+++..+.+|...|.+++|+| ++.+|++++.|++|++||.... .....+..|...|.+++|+|+ +.+|++++.
T Consensus 143 ~~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~- 219 (330)
T 2hes_X 143 YECISVLQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD- 219 (330)
T ss_dssp CEEEEEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET-
T ss_pred eEEEEEeccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC-
Confidence 46778899999999999965 6679999999999999998766 456678889999999999998 678998876
Q ss_pred CCCceeEEEEeCCCC--------ceeEEEec-cccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCee--eEEEeCC
Q 001386 551 KEGESFLVEWNESEG--------AIKRTYQG-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAG 619 (1088)
Q Consensus 551 ~~~~~~i~iwd~~~~--------~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~~ 619 (1088)
++.|++||+.++ .....+.+ |. ..|.+++|++++ ++++++.||.|++|+..+++. ..... .
T Consensus 220 ---D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~-~ 291 (330)
T 2hes_X 220 ---DSTVRVWKYMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA-L 291 (330)
T ss_dssp ---TSCEEEEEEEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES-C
T ss_pred ---CCeEEEEEecCCCccccceeEEeeecccccc---cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc-c
Confidence 556999998764 33444443 44 899999999764 899999999999999988742 32221 2
Q ss_pred CCCC-CCceEEEec--CCCEEEEEeCCCcEEEEeCCC
Q 001386 620 GGLP-ENPRICFNK--NGTLLAVIANENRIKILETPE 653 (1088)
Q Consensus 620 ~~~~-~v~~v~~s~--~~~~l~~~~~dg~i~iwd~~~ 653 (1088)
.+.. .|.+++|+| ++++|++++.||+|++|++..
T Consensus 292 ~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 292 CHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 2233 689999999 789999999999999999864
No 38
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.3e-36 Score=329.02 Aligned_cols=269 Identities=19% Similarity=0.252 Sum_probs=241.9
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+.+|.+.|.+++|+||+++||+++.||+|++||+.+++.++ .+..|..+|.+++|+|+++ ++++|+.|++|++||
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEEE
Confidence 77899999999999999999999999999999999986555 6789999999999999999 899999999999999
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc-eEEecCCCCceEEEEEcc-CCCEEEEEee
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSA-NGRRLFSCGT 549 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~-~g~~l~~~~~ 549 (1088)
+.+++++..+.+|...|.+++|+| ++.+|++|+.||+|++||+++... ...+..|...|.+++|+| ++..|++++.
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 999999999999999999999955 667999999999999999988744 457788999999999999 6789999876
Q ss_pred CCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeC--CCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCce
Q 001386 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1088)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1088)
++.|++||+.++.....+..+. ...+..+.|+| ++.++++++.|++|++||+.+++++..+..|.. .|.+
T Consensus 162 ----D~~v~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~--~v~~ 233 (304)
T 2ynn_A 162 ----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSF 233 (304)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCC--TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEEE
T ss_pred ----CCeEEEEECCCCCccceeccCC--cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC--CEEE
Confidence 5569999998887766665433 36788899986 678999999999999999999999999987754 6899
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCC
Q 001386 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI 675 (1088)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~ 675 (1088)
++|+|++++|++++.||+|++||..+++....+..+...+.+++++|.
T Consensus 234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (304)
T 2ynn_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT 281 (304)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTT
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCC
Confidence 999999999999999999999999999999999999999999998853
No 39
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-37 Score=353.97 Aligned_cols=350 Identities=14% Similarity=0.200 Sum_probs=275.9
Q ss_pred CCceeeeecCCCCeEEEEE----------cccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 335 SSPMSMDFHPVQHTLLLVG----------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g----------~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
..|.+++|||+|+.++|+| +.|+.|+|||+.+++..... ....|...|.+++|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~-----------------~~~~~~~~v~~~~~ 75 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPI-----------------ASLQVDSKFNDLDW 75 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCS-----------------CCCCCSSCEEEEEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEE-----------------EEEecCCceEEEEE
Confidence 4899999999998689999 88999999999988633110 02358899999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCc-ccceeEeccCCCCEEEEEecCC-CCcEEEEEEeCCCcEEEEeCCCCc------
Q 001386 405 SPDGSLLGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS------ 476 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~d-~~~l~l~s~s~d~~i~vwd~~~~~------ 476 (1088)
+|++++||+++.||.|++||+.+... ......+.+|...|.+++|+|+ ++ ++++++.|+.|++||+.+++
T Consensus 76 s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~ 153 (416)
T 2pm9_A 76 SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESPSNY 153 (416)
T ss_dssp CSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCTTTC
T ss_pred CCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCccccccc
Confidence 99999999999999999999987211 1234468899999999999998 66 79999999999999999887
Q ss_pred eeE---EeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCC------CCceEEEEEccCC-CEEEE
Q 001386 477 RTY---SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GLGCTRMAYSANG-RRLFS 546 (1088)
Q Consensus 477 ~~~---~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~g-~~l~~ 546 (1088)
... .+.+|...|.+++|++. ++.++++++.||.|++||+++.+....+..+ ...+.+++|+|++ .++++
T Consensus 154 ~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 232 (416)
T 2pm9_A 154 TPLTPGQSMSSVDEVISLAWNQS-LAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT 232 (416)
T ss_dssp CCBCCCCSCCSSCCCCEEEECSS-CTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEE
T ss_pred cccccccccCCCCCeeEEEeCCC-CCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEE
Confidence 333 34679999999999654 2579999999999999999998888877776 6789999999998 57777
Q ss_pred EeeCCCCceeEEEEeCCCC-ceeEEEe-ccccccccEEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCC
Q 001386 547 CGTSKEGESFLVEWNESEG-AIKRTYQ-GLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1088)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~-~~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1088)
++.++ .++.|++||++++ ..+..+. +|. ..|.+++|+| +++++++++.||.|++||+.+++.+..+..+..
T Consensus 233 ~~~d~-~~~~i~~~d~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~-- 306 (416)
T 2pm9_A 233 ATGSD-NDPSILIWDLRNANTPLQTLNQGHQ---KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN-- 306 (416)
T ss_dssp EECCS-SSCCCCEEETTSTTSCSBCCCSCCS---SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS--
T ss_pred EECCC-CCceEEEEeCCCCCCCcEEeecCcc---CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC--
Confidence 76532 1236999999986 5666676 676 8999999999 899999999999999999999999999987654
Q ss_pred CCceEEEecCC-CEEEEEeCCCcEEEEeCCCCCccccccc--------------------ccCcceeeeecCCCcceecc
Q 001386 624 ENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGV--------------------LSDNLRKLSVNPISTVTGAG 682 (1088)
Q Consensus 624 ~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------------~~~~v~~~~~~p~~~~~~~~ 682 (1088)
.|.+++|+|++ .++++++.|+.|++|++.+......... +...+..+.+ +.... ..
T Consensus 307 ~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~ 383 (416)
T 2pm9_A 307 WCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL-QAPTW--YG 383 (416)
T ss_dssp CCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCC-CCCST--TC
T ss_pred ceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccc-cCCcc--cc
Confidence 68999999998 8999999999999999998764433221 1111111111 00000 00
Q ss_pred ccCCceeecCCCCCCCCcccccccCccceeccccc
Q 001386 683 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1088)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 717 (1088)
.....+.| +++|+++++++.|+.|++|++..
T Consensus 384 ~~~~~~~~----s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 384 EPSPAAHW----AFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp CCSCCCEE----ETTTEEECBCTTSSCBCCBCCCC
T ss_pred CCccceEE----eeCCeEEEEeCCCCeEEEEEecc
Confidence 01112334 68999999999999999999763
No 40
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.7e-36 Score=333.78 Aligned_cols=303 Identities=18% Similarity=0.259 Sum_probs=260.2
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
.+..+|+||++.|++|+|+|++..+||||+.|++|+|||+.+++..... ....+.+|...|.+++|
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~--------------~~~~l~~h~~~V~~~~~ 94 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI--------------PQRALRGHSHFVSDVVI 94 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE--------------EEEEECCCSSCEEEEEE
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce--------------eeEEEeCCCCCEEEEEE
Confidence 4456899999999999999985348999999999999999887644321 12237889999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee-EEecc
Q 001386 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEG 483 (1088)
Q Consensus 405 s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~-~~~~~ 483 (1088)
+|||++|++++.|+.|++|+...+.... ....+...+..+.++++++ .+++++.|+.+++||+...... ....+
T Consensus 95 s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~ 169 (340)
T 4aow_A 95 SSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDES 169 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSS
T ss_pred CCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEecc
Confidence 9999999999999999999999876444 5667888999999999999 7999999999999998766543 44578
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 563 (1088)
|...+..++|.+.....++++++.|+.|++||+++.+....+..+...|.+++|+|++++|++++. ++.|++||+.
T Consensus 170 ~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd~~ 245 (340)
T 4aow_A 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWDLN 245 (340)
T ss_dssp CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEETT
T ss_pred ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEec
Confidence 999999999988877789999999999999999999999999999999999999999999999976 5679999999
Q ss_pred CCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCC-------CCCCCCceEEEecCCCE
Q 001386 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-------GGLPENPRICFNKNGTL 636 (1088)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-------~~~~~v~~v~~s~~~~~ 636 (1088)
+++.+..+..+. .+.+++|+|++. +++++.|+.|++||++++..+..+... .+...|.+++|+|+|++
T Consensus 246 ~~~~~~~~~~~~----~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 320 (340)
T 4aow_A 246 EGKHLYTLDGGD----IINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT 320 (340)
T ss_dssp TTEEEEEEECSS----CEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSE
T ss_pred cCceeeeecCCc----eEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCE
Confidence 999998887654 799999999865 566677999999999998887776532 34457899999999999
Q ss_pred EEEEeCCCcEEEEeCCCCC
Q 001386 637 LAVIANENRIKILETPESN 655 (1088)
Q Consensus 637 l~~~~~dg~i~iwd~~~~~ 655 (1088)
|++|+.||.|+|||+.+|.
T Consensus 321 l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 321 LFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEETTSCEEEEEEEC--
T ss_pred EEEEeCCCEEEEEeCCCcC
Confidence 9999999999999998774
No 41
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.8e-36 Score=333.19 Aligned_cols=324 Identities=13% Similarity=0.163 Sum_probs=273.6
Q ss_pred CCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEE
Q 001386 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1088)
Q Consensus 333 h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~la 412 (1088)
|.+.|.+++|||||+ +++++..++.+.+|+......... ..+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQ-MQPVPFPPDALIGPGIPRHARQIN-------------------TLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSC-EEECCCCTTSSSSTTCCSEEEEEE-------------------EECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCC-EEEeecCCCcEeccccCCccccce-------------------eccCCCceEEEEEecCCcEEE
Confidence 455899999999999 677777667666665444322211 446999999999999999999
Q ss_pred EEeCCCEEEEEEccCCCcccceeEec--cCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc--eeEEeccCCccE
Q 001386 413 VAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPV 488 (1088)
Q Consensus 413 s~~~dg~i~vwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~--~~~~~~~~~~~v 488 (1088)
+++ ||.|++||+.+++.......+. +|...|.+++|+|+++ ++++++.|+.|++||+.+++ ....+..|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 998 9999999999887655554554 7999999999999999 89999999999999999887 567788899999
Q ss_pred EEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCcee
Q 001386 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1088)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1088)
.+++|++ ++.++++++.||.|++||+++.+....+..+...+.+++|+|+++++++++. ++.|++||+.+++.+
T Consensus 145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceE
Confidence 9999954 6789999999999999999999888888889999999999999999999875 556999999999888
Q ss_pred EEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEE
Q 001386 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1088)
Q Consensus 569 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1088)
..+.. . ..+.+++|+|+++++++++.++.|++||+.+++.. .+..+ ...+.+++|+|+++++++++.||.|++
T Consensus 219 ~~~~~-~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~~ 291 (337)
T 1gxr_A 219 QQHDF-T---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLH--ESCVLSLKFAYCGKWFVSTGKDNLLNA 291 (337)
T ss_dssp EEEEC-S---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCC--SSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred eeecC-C---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCC--ccceeEEEECCCCCEEEEecCCCcEEE
Confidence 77753 3 68999999999999999999999999999988764 34333 346899999999999999999999999
Q ss_pred EeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeec
Q 001386 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 728 (1088)
Q Consensus 649 wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~ 728 (1088)
|++.+++.....
T Consensus 292 ~~~~~~~~~~~~-------------------------------------------------------------------- 303 (337)
T 1gxr_A 292 WRTPYGASIFQS-------------------------------------------------------------------- 303 (337)
T ss_dssp EETTTCCEEEEE--------------------------------------------------------------------
T ss_pred EECCCCeEEEEe--------------------------------------------------------------------
Confidence 999866433110
Q ss_pred CCccccccEEEEEEecCCceEEEeccccceEEEEc
Q 001386 729 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 763 (1088)
Q Consensus 729 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~ 763 (1088)
.+...+.+++|+|+++++++++.||.+++|++
T Consensus 304 ---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 304 ---KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ---ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ---cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 14567889999999999999999999999985
No 42
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.6e-36 Score=332.44 Aligned_cols=299 Identities=16% Similarity=0.201 Sum_probs=239.9
Q ss_pred cccc-cEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCC
Q 001386 732 VKAN-KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 810 (1088)
Q Consensus 732 ~~~~-~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 810 (1088)
+|.. .+..++|+|+|++|++++.|+.|++|++..+.. .... ....+|...|.+++|+|++
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~------------------~~~~-~~~~~h~~~v~~~~~sp~g 73 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW------------------ICKS-VLSEGHQRTVRKVAWSPCG 73 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE------------------EEEE-EECSSCSSCEEEEEECTTS
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc------------------eeee-eeccccCCcEEEEEECCCC
Confidence 3666 899999999999999999999999999764321 1111 1112589999999999999
Q ss_pred CEEEEEe-CCcEEEEEcCCc--eeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc---eeeeeeccccCC
Q 001386 811 AYLFSAS-GGVISLYIVMTF--KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEGHSKR 884 (1088)
Q Consensus 811 ~~l~~~~-dg~i~iwd~~~~--~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~---~~~~~l~~h~~~ 884 (1088)
++|++++ |+++++||..++ +.+..+.+|...|.+++|+| ++++|++|+.|++|++||+.++ +++..+.+|...
T Consensus 74 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~ 152 (345)
T 3fm0_A 74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQD 152 (345)
T ss_dssp SEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSC
T ss_pred CEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCC
Confidence 9999998 899999999876 46788999999999999999 8999999999999999999875 456778899999
Q ss_pred eeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCc-
Q 001386 885 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE- 962 (1088)
Q Consensus 885 V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~- 962 (1088)
|.+++|+|++++|++++.|++|++||+.+++. .+.....+|.. .|.+++|+|+|++|++ +.|++|++||...
T Consensus 153 v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~---~~~~~~~~h~~---~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~ 226 (345)
T 3fm0_A 153 VKHVVWHPSQELLASASYDDTVKLYREEEDDW---VCCATLEGHES---TVWSLAFDPSGQRLASCSDDRTVRIWRQYLP 226 (345)
T ss_dssp EEEEEECSSSSCEEEEETTSCEEEEEEETTEE---EEEEEECCCSS---CEEEEEECTTSSEEEEEETTSCEEEEEEECT
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEecCCCE---EEEEEecCCCC---ceEEEEECCCCCEEEEEeCCCeEEEeccccC
Confidence 99999999999999999999999999987542 23444556654 7999999999999999 5789999999632
Q ss_pred --------------ceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceE----EEeccccccCCCCcc
Q 001386 963 --------------LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ----CRILSTAYLRPTTSC 1024 (1088)
Q Consensus 963 --------------~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~----~~~~~~~~~~~~~~~ 1024 (1088)
.+++..+...|...|.+++|++++..|++++.|+.|++|+..++... ..+.... .. +
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~---~~--~ 301 (345)
T 3fm0_A 227 GNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHL---HQ--A 301 (345)
T ss_dssp TCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEE---TT--S
T ss_pred CCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeee---cc--c
Confidence 23344444458999999999999999999999999999998765321 1111000 01 1
Q ss_pred ccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 001386 1025 LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1061 (1088)
Q Consensus 1025 ~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~~ 1061 (1088)
+.-...+++|+|+++.+|++|+.||+|++|++.....
T Consensus 302 h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 302 HSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp SSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred ccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 2234578999995446999999999999999977654
No 43
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=9.5e-35 Score=371.35 Aligned_cols=529 Identities=10% Similarity=0.021 Sum_probs=375.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeC------CCcEE
Q 001386 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIK 468 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~------d~~i~ 468 (1088)
+...+.+.+||| +.||.++. +.|++|++.+++.. .+.+|...+.+++|||||+ .|+.++. +..|+
T Consensus 13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~----~lt~~~~~v~~~~~SPDG~--~la~~s~~~~~~~~~~i~ 83 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTR----KIVSNLGVINNARFFPDGR--KIAIRVMRGSSLNTADLY 83 (1045)
T ss_dssp CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEE----EEECSSSEEEEEEECTTSS--EEEEEEEESTTCCEEEEE
T ss_pred ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEE----EeeeCCCcccCeEECCCCC--EEEEEEeeccCCCCCeEE
Confidence 557889999995 58888876 68999999987632 4778999999999999999 5666543 34799
Q ss_pred EEeCCCCceeEEeccCCccE-------EEEeeeeeCCceEEEEEecC------CeEEEEECCCCCceEEecCCCCceEEE
Q 001386 469 VWDAVTGSRTYSFEGHGAPV-------YSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1088)
Q Consensus 469 vwd~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~ 535 (1088)
+||+.+++ ...+..|...+ ..++|+ +||+++++++.+ ..|..|++..+........ ....+
T Consensus 84 ~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~S--pDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~---~~~~~ 157 (1045)
T 1k32_A 84 FYNGENGE-IKRITYFSGKSTGRRMFTDVAGFD--PDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLG---PATHI 157 (1045)
T ss_dssp EEETTTTE-EEECCCCCEEEETTEECSEEEEEC--TTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSC---SCSEE
T ss_pred EEECCCCC-eEEcccCCCcccccccccccccCC--CCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCC---Cccee
Confidence 99988876 57788888888 888885 466777777754 3577777766544332222 23467
Q ss_pred EEccCCCEEEEEeeCCC--------CceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 001386 536 AYSANGRRLFSCGTSKE--------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1088)
Q Consensus 536 ~~s~~g~~l~~~~~~~~--------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1088)
+|+| | +++++..+.+ +.....+|....+.....+.+|. ..+.++.|+++ ..+++++.++.+.+|.+
T Consensus 158 ~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~---~~v~~~~~s~d-~l~~~~~~dg~~~l~~~ 231 (1045)
T 1k32_A 158 LFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS---THVSSPVIVGH-RIYFITDIDGFGQIYST 231 (1045)
T ss_dssp EEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS---SCCEEEEEETT-EEEEEECTTSSCEEEEE
T ss_pred eeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC---CcccceEEeCC-EEEEEEeccCceEEEEE
Confidence 7999 8 7777643211 12234455433324445556666 88999999988 66667788899999986
Q ss_pred CC-CeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCC
Q 001386 608 NK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 686 (1088)
Q Consensus 608 ~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~ 686 (1088)
.. +.....+..+. .+...+|+|||+.++.+. ++.|.+|+..... +..+..+...
T Consensus 232 ~~~g~~~~~l~~~~---~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~~~-------------------- 286 (1045)
T 1k32_A 232 DLDGKDLRKHTSFT---DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGDLE-------------------- 286 (1045)
T ss_dssp ETTSCSCEECCCCC---SSCEEEEEESSSCEEEEE-TTEEEEECTTTCC-EEECCCCCCC--------------------
T ss_pred eCCCCcceEecCCC---CcceeeEcCCCCEEEEEe-CCEEEEecCCceE-eeeeccCccc--------------------
Confidence 53 44445554433 367789999999998884 7899999984321 1111110000
Q ss_pred ceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEe-cCCceEEEeccccceEEEEccC
Q 001386 687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPR 765 (1088)
Q Consensus 687 ~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~~~~~dg~v~iw~~~~ 765 (1088)
. .... ..+...+..++|+ |||+.+++++ ++.+.+|++..
T Consensus 287 ---------------------~-------------~~~~-----~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~ 326 (1045)
T 1k32_A 287 ---------------------S-------------PEDR-----IISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSG 326 (1045)
T ss_dssp ---------------------B-------------CCSE-----EEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTS
T ss_pred ---------------------c-------------cccc-----cccccccceeeecCCCCCEEEEEE-cCEEEEEcCCC
Confidence 0 0000 0144567789999 9999888877 77888887543
Q ss_pred CCCCCCCCCCCcccCCCCCCcceeeccCCCCCCC-CeeEEEEecCCCEEEEEe-CCcEE-EEEcCCceeEEEecCCCCCe
Q 001386 766 NDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQE-AVPCFALSKNDAYLFSAS-GGVIS-LYIVMTFKTILTIMPPSPTA 842 (1088)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~dg~~l~~~~-dg~i~-iwd~~~~~~~~~~~~~~~~i 842 (1088)
+.. .. +. .+.. .+..++|+ ||+.+++++ ++.+. +|++.+++.. .+.+|...+
T Consensus 327 ~~~-------------------~~--~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~ 381 (1045)
T 1k32_A 327 TYV-------------------LK--VP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNV 381 (1045)
T ss_dssp SBE-------------------EE--CS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSE
T ss_pred Cce-------------------EE--cc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccce
Confidence 211 11 11 2555 78899999 999999887 45687 8899877654 444777899
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCC----------cEEEEEcC
Q 001386 843 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA----------QIFVWDVD 912 (1088)
Q Consensus 843 ~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg----------~i~iwd~~ 912 (1088)
..++||| |+++|++++.++.|++||+.+++....+.+|.+.+.+++|||||++|++++.++ .|++||+.
T Consensus 382 ~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 382 FAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp EEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred eeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence 9999999 899999999999999999999998888878999999999999999999887654 89999999
Q ss_pred CCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCCeEEEEEcCccee--------------------------
Q 001386 913 GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTC-------------------------- 965 (1088)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~vwd~~~~~~-------------------------- 965 (1088)
+++. .....+.. .+..++|+|||++|+.+ .++...+|+......
T Consensus 461 ~g~~------~~l~~~~~---~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (1045)
T 1k32_A 461 GRKI------FAATTENS---HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPR 531 (1045)
T ss_dssp TTEE------EECSCSSS---BEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCG
T ss_pred CCcE------EEeeCCCc---ccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcC
Confidence 8641 12222222 47889999999999984 445555555332211
Q ss_pred ----------------eeeeecCCCcCEEEEEEeeCCCEEEE-------------EeCCCcEEEEEcCCCceEEEecccc
Q 001386 966 ----------------LKQWFPISSVPISQATFSCDCRMVFT-------------SFVDGTLSIHEASNLEVQCRILSTA 1016 (1088)
Q Consensus 966 ----------------~~~~~~~h~~~v~~l~fs~dg~~l~s-------------~s~dg~v~vwd~~~~~~~~~~~~~~ 1016 (1088)
....+..|.+.+..++|+|||+++++ ......|.+||+.+++......
T Consensus 532 ~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~--- 608 (1045)
T 1k32_A 532 SMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN--- 608 (1045)
T ss_dssp GGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEE---
T ss_pred ccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEeec---
Confidence 01112346678999999999987775 1234578889999987542221
Q ss_pred ccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 1017 YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~ 1060 (1088)
....++|+| ||+.|++++.| .|++|++....
T Consensus 609 -----------~v~~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 609 -----------NLTDLRLSA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp -----------EEEEEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred -----------CcceEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 134578999 89999988866 89999996644
No 44
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-35 Score=323.68 Aligned_cols=306 Identities=15% Similarity=0.178 Sum_probs=232.5
Q ss_pred CCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC--eeeEEEeCCCCCCCCceEEEecCCCEEEEEe
Q 001386 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1088)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1088)
+.+.++.+.+|. ..|.+++|+|+ +|++++.|++|++||+.++ +.+..+....+...|.+++|+|++++|++++
T Consensus 3 ~~~~~~~~~~h~---~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 77 (330)
T 2hes_X 3 SINLIKSLKLYK---EKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS 77 (330)
T ss_dssp CCEEEEEEECCS---SCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE
T ss_pred ccccceeeccCC---CceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe
Confidence 455677888888 89999999987 9999999999999999875 4455553322455799999999999999999
Q ss_pred CCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCC
Q 001386 642 NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS 721 (1088)
Q Consensus 642 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~ 721 (1088)
.|++|++|+........ .
T Consensus 78 ~D~~v~iw~~~~~~~~~-~------------------------------------------------------------- 95 (330)
T 2hes_X 78 FDSTVSIWAKEESADRT-F------------------------------------------------------------- 95 (330)
T ss_dssp TTSCEEEEEC--------C-------------------------------------------------------------
T ss_pred CCCcEEEEEcccCcCcc-c-------------------------------------------------------------
Confidence 99999999976321000 0
Q ss_pred cceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCe
Q 001386 722 ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAV 801 (1088)
Q Consensus 722 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 801 (1088)
....+ .. + .+|...|
T Consensus 96 -----------------------~~~~~---------~~-------------------------------~--~~h~~~V 110 (330)
T 2hes_X 96 -----------------------EMDLL---------AI-------------------------------I--EGHENEV 110 (330)
T ss_dssp -----------------------CCEEE---------EE-------------------------------E--C----CE
T ss_pred -----------------------cceeE---------EE-------------------------------E--cCCCCcE
Confidence 00000 00 0 0377788
Q ss_pred eEEEEecCCCEEEEEe-CCcEEEEEcCC----ceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc--ee
Q 001386 802 PCFALSKNDAYLFSAS-GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS--EV 874 (1088)
Q Consensus 802 ~~~~~s~dg~~l~~~~-dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~--~~ 874 (1088)
.+++|+|++++|++++ |++|++||+.. .+.+..+.+|...|.+++|+| ++.+|++|+.|++|++||..++ ++
T Consensus 111 ~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~ 189 (330)
T 2hes_X 111 KGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWEC 189 (330)
T ss_dssp EEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeE
Confidence 8888888888888887 78888888842 356778889999999999999 8999999999999999999876 67
Q ss_pred eeeeccccCCeeEEEECCC--CCEEEEEeCCCcEEEEEcCCCce---eeeeeeecCCC-CccCCCCeEEEEEcCCCCEEE
Q 001386 875 ISKLEGHSKRVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGI---QTCRSLQTPDG-VMTLAPSETHIQFHKDQTRFL 948 (1088)
Q Consensus 875 ~~~l~~h~~~V~~l~~s~d--g~~las~s~Dg~i~iwd~~~~~~---~~~~~~~~~~~-~~~~~~~v~~~~fs~dg~~l~ 948 (1088)
+..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+..+.. ....+.....+ |. ..|.+++|++++.++.
T Consensus 190 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~~l~s 266 (330)
T 2hes_X 190 VAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNGLIAS 266 (330)
T ss_dssp EEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTSCEEE
T ss_pred EEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccc---cceEEEEEcCCCEEEE
Confidence 8899999999999999998 77999999999999999975321 11123333333 43 3799999998775444
Q ss_pred EEeCCeEEEEEcCcce--eeeeeecCCCc-CEEEEEEee--CCCEEEEEeCCCcEEEEEcCC
Q 001386 949 LVHETHLAIYEAEELT--CLKQWFPISSV-PISQATFSC--DCRMVFTSFVDGTLSIHEASN 1005 (1088)
Q Consensus 949 ~~~d~~i~vwd~~~~~--~~~~~~~~h~~-~v~~l~fs~--dg~~l~s~s~dg~v~vwd~~~ 1005 (1088)
.+.|+.|++||..+++ .......+|.. .|.+++|+| |+++|++|+.||+|++|++.+
T Consensus 267 ~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 267 VGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 4789999999998874 34444567876 899999999 789999999999999999865
No 45
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.2e-35 Score=322.20 Aligned_cols=291 Identities=20% Similarity=0.287 Sum_probs=259.1
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEE
Q 001386 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vw 470 (1088)
.+.+|...|.+++|+|+|++||+|+.||.|++|++.+++... .+.+|...|.+++|+|+++ ++++++.|+.|++|
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vw 92 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIW 92 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEE
Confidence 378999999999999999999999999999999999887554 6789999999999999999 89999999999999
Q ss_pred eCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeC
Q 001386 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1088)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 550 (1088)
|+.+++++..+.+|...|.+++|++ ++.++++++.||.|++||+++.+....+..+...|.+++|+|+++++++++.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 169 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY- 169 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC-
Confidence 9999999999999999999999955 6679999999999999999999988899999999999999999999999986
Q ss_pred CCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEE
Q 001386 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1088)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1088)
++.|++||+.+++.+..+.... ...+..++|+|+++++++++.|+.|++||+.+++.+..+..+..........+
T Consensus 170 ---d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (312)
T 4ery_A 170 ---DGLCRIWDTASGQCLKTLIDDD--NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 244 (312)
T ss_dssp ---TSCEEEEETTTCCEEEEECCSS--CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEE
T ss_pred ---CCcEEEEECCCCceeeEEeccC--CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEE
Confidence 4569999999998887765433 36899999999999999999999999999999999999887654333334445
Q ss_pred e-cCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccc--cC
Q 001386 631 N-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE--AE 707 (1088)
Q Consensus 631 s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d 707 (1088)
+ +++.++++++.||.|++||+.+++.+..+.+|.+.|.+++++ |++..+++++ .|
T Consensus 245 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----------------------p~~~~l~s~~~~~d 302 (312)
T 4ery_A 245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACH----------------------PTENIIASAALEND 302 (312)
T ss_dssp ECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------SSSSEEEEEECTTT
T ss_pred EeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeec----------------------CcCCceEEEEccCC
Confidence 4 678899999999999999999999999999999999999998 5567777775 68
Q ss_pred ccceecccc
Q 001386 708 NKSEVEKPL 716 (1088)
Q Consensus 708 ~~i~vw~~~ 716 (1088)
++|++|+.+
T Consensus 303 ~~i~~W~~d 311 (312)
T 4ery_A 303 KTIKLWKSD 311 (312)
T ss_dssp CCEEEEECC
T ss_pred ccEEEecCC
Confidence 999999864
No 46
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.1e-35 Score=326.53 Aligned_cols=292 Identities=12% Similarity=0.178 Sum_probs=230.9
Q ss_pred ceeEEEeccccccccEEEEEE-----eC-CCCEEEEEeCCCcEEEEEcCCC-------eeeEEEeCCCCCCCCceEEEec
Q 001386 566 AIKRTYQGLQLQHNSVSVVHF-----DT-AKDQILAAGDDHVIKIWDMNKV-------QLLTTIDAGGGLPENPRICFNK 632 (1088)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~-----~~-~~~~l~~~s~dg~i~iwd~~~~-------~~~~~~~~~~~~~~v~~v~~s~ 632 (1088)
+....+.+|. ..|.+++| ++ ++++|++|+.|++|++||+.++ .+...+..|. ..|.+++|+|
T Consensus 12 ~~~~~l~gH~---~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~--~~V~~~~~~~ 86 (343)
T 2xzm_R 12 VKRGILEGHS---DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN--HFVSDLALSQ 86 (343)
T ss_dssp EEEEEEECCS---SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCS--SCEEEEEECS
T ss_pred eeeeeeccch---hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCC--CceEEEEECC
Confidence 3456778888 89999999 66 8999999999999999999753 3455666554 4699999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCcccee
Q 001386 633 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1088)
Q Consensus 633 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v 712 (1088)
++.++++++.|++|++||+.+++.+..+.
T Consensus 87 ~~~~l~s~s~D~~v~lwd~~~~~~~~~~~--------------------------------------------------- 115 (343)
T 2xzm_R 87 ENCFAISSSWDKTLRLWDLRTGTTYKRFV--------------------------------------------------- 115 (343)
T ss_dssp STTEEEEEETTSEEEEEETTSSCEEEEEE---------------------------------------------------
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEEc---------------------------------------------------
Confidence 99999999999999999987653221111
Q ss_pred ccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeecc
Q 001386 713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDT 792 (1088)
Q Consensus 713 w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1088)
T Consensus 116 -------------------------------------------------------------------------------- 115 (343)
T 2xzm_R 116 -------------------------------------------------------------------------------- 115 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEe---cCCCCCeEEEEEcCCCC----------cEEEEE
Q 001386 793 TDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI---MPPSPTATSLAFNPHDN----------NVIAIG 858 (1088)
Q Consensus 793 ~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~---~~~~~~i~~l~~sp~d~----------~~lasg 858 (1088)
+|...|.+++|+|++++|++++ |++|++||+... ..... ..|...|.+++|+| ++ .+++++
T Consensus 116 ---~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~ 190 (343)
T 2xzm_R 116 ---GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSP-IMKSANKVQPFAPYFASV 190 (343)
T ss_dssp ---CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEEEEE
T ss_pred ---CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeecc-ccccccccCCCCCEEEEE
Confidence 1555666677777777777666 677777776632 22222 26788999999999 55 799999
Q ss_pred eCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEE
Q 001386 859 MDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 938 (1088)
Q Consensus 859 ~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 938 (1088)
+.||.|++|| .+++....+.+|...|.+++|+|+|++|++++.||+|++||+...... ....... ..|.++
T Consensus 191 ~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~----~~~~~~~----~~v~~v 261 (343)
T 2xzm_R 191 GWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP----QREFDAG----STINQI 261 (343)
T ss_dssp ETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC----SEEEECS----SCEEEE
T ss_pred cCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccc----ceeecCC----CcEEEE
Confidence 9999999999 456777889999999999999999999999999999999999543211 1111111 258999
Q ss_pred EEcCCCCEEEEEeCCeEEEEEcCcceeee--eee----------cCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC
Q 001386 939 QFHKDQTRFLLVHETHLAIYEAEELTCLK--QWF----------PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1006 (1088)
Q Consensus 939 ~fs~dg~~l~~~~d~~i~vwd~~~~~~~~--~~~----------~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~ 1006 (1088)
+|+|++.+++++.|+.|++||+.+++... .+. .+|...|.+++|+|||++|++|+.||+|++|++.++
T Consensus 262 ~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 262 AFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 99999999999999999999998876544 221 267889999999999999999999999999998876
Q ss_pred c
Q 001386 1007 E 1007 (1088)
Q Consensus 1007 ~ 1007 (1088)
.
T Consensus 342 ~ 342 (343)
T 2xzm_R 342 A 342 (343)
T ss_dssp E
T ss_pred C
Confidence 4
No 47
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=7.1e-36 Score=343.10 Aligned_cols=353 Identities=13% Similarity=0.129 Sum_probs=279.2
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~ 415 (1088)
.+++++|+|+|+ +|++|+.|+.|++||+.+++.... +..| ..+...+|+|++++||+|+
T Consensus 58 ~~~~~~~s~~g~-~l~~~~~d~~v~i~d~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~l~~~~ 116 (420)
T 3vl1_A 58 AGKGNTFEKVGS-HLYKARLDGHDFLFNTIIRDGSKM-------------------LKRA-DYTAVDTAKLQMRRFILGT 116 (420)
T ss_dssp CCTTCEEEEEET-TEEEEEETTEEEEEECCSEETTTT-------------------SCSC-CEEEEEEECSSSCEEEEEE
T ss_pred cccceeeeecCC-eEEEEEcCCcEEEEEecccceeeE-------------------EecC-CceEEEEEecCCCEEEEEE
Confidence 566899999999 589999999999999998876543 3334 4555668899999999999
Q ss_pred CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeee
Q 001386 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 495 (1088)
.||.|++||+.+++... .+.+|...|++++|+|+++ +|++++.|+.|++||+.+++.+..+.+|...|.+++|++
T Consensus 117 ~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 191 (420)
T 3vl1_A 117 TEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID 191 (420)
T ss_dssp TTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET
T ss_pred CCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC
Confidence 99999999999876544 5679999999999999999 899999999999999999999999999999999999954
Q ss_pred eCCceEEEEEecCCeEEEEECCCCCceEEecC---CCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEe
Q 001386 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDA---PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572 (1088)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 572 (1088)
++.+|++++.||.|++||+++.+....+.. +...+.++++.+.+...+ ..
T Consensus 192 --~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------------------------~~ 244 (420)
T 3vl1_A 192 --RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL-------------------------HE 244 (420)
T ss_dssp --TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSC-------------------------GG
T ss_pred --CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCccee-------------------------ee
Confidence 678999999999999999999888777764 445677777766542221 11
Q ss_pred ccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCC-EEEEEeCCCcEEEEeC
Q 001386 573 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILET 651 (1088)
Q Consensus 573 ~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~ 651 (1088)
.+ ...+.+++|+|+++++++++.||.|++||+.+++.+..+... +...+.+++|+|+++ +|++++.||.|++||+
T Consensus 245 ~~---~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~ 320 (420)
T 3vl1_A 245 IS---TSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK-FTCSCNSLTVDGNNANYIYAGYENGMLAQWDL 320 (420)
T ss_dssp GC---CCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT-TSSCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred cc---cCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc-cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEc
Confidence 12 267888899999999999999999999999999888777542 234689999999999 9999999999999999
Q ss_pred CCCCc-ccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCC
Q 001386 652 PESNS-VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPS 730 (1088)
Q Consensus 652 ~~~~~-~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~ 730 (1088)
.+++. +..+..
T Consensus 321 ~~~~~~~~~~~~-------------------------------------------------------------------- 332 (420)
T 3vl1_A 321 RSPECPVGEFLI-------------------------------------------------------------------- 332 (420)
T ss_dssp TCTTSCSEEEEE--------------------------------------------------------------------
T ss_pred CCCcCchhhhhc--------------------------------------------------------------------
Confidence 87632 221111
Q ss_pred ccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCC
Q 001386 731 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 810 (1088)
Q Consensus 731 ~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 810 (1088)
.+...+.++.+ ++++.+++++.||.+++|++....... .+....... . ...+...|.+++|+|++
T Consensus 333 -~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~------~~~~~~~~~-~------~~~~~~~v~~~~~s~~~ 397 (420)
T 3vl1_A 333 -NEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESER------PAIEFETPT-F------LVSNDDAVSQFCYVSDD 397 (420)
T ss_dssp -STTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCS------CEECTTSCE-E------ECCSSCCCCEEEEECCS
T ss_pred -cCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCc------cceeccCcc-E------EccCCcceEEEEEccCC
Confidence 03445666644 578889999999999999987643210 010111111 1 11378899999999999
Q ss_pred C----EEEEEeCCcEEEEEcCC
Q 001386 811 A----YLFSASGGVISLYIVMT 828 (1088)
Q Consensus 811 ~----~l~~~~dg~i~iwd~~~ 828 (1088)
+ +++++++|.+.+|+++.
T Consensus 398 ~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 398 ESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp SSSCEEEEEETTTEEEEEESCC
T ss_pred CCcceEEEEcCCceEEEEeccC
Confidence 9 77777799999999864
No 48
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.3e-35 Score=340.99 Aligned_cols=347 Identities=12% Similarity=0.111 Sum_probs=284.1
Q ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc
Q 001386 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1088)
Q Consensus 397 ~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~ 476 (1088)
..+++++|+|+|++|++++.|+.|++||+.+++... .+..| ..+....|+++++ +|++++.|+.|++||+.+++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence 345579999999999999999999999999887655 34455 4455567899999 89999999999999999999
Q ss_pred eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCcee
Q 001386 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1088)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 556 (1088)
....+.+|...|.+++|++ ++.+|++++.||.|++||+++.+....+..|...|.+++|+|++++|++++. ++.
T Consensus 131 ~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~ 204 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGT 204 (420)
T ss_dssp EEEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSC
T ss_pred eeeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCc
Confidence 9988899999999999955 6779999999999999999999998999999999999999999999999986 455
Q ss_pred EEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCE
Q 001386 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636 (1088)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 636 (1088)
|++||+.+++.+..+..+..+...+.++++.+.+... ... .....+.+++|+|++++
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------------~~~--~~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ---------------------LHE--ISTSKKNNLEFGTYGKY 261 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS---------------------CGG--GCCCCCCTTCSSCTTEE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce---------------------eee--cccCcccceEEcCCCCE
Confidence 9999999999999999877667889999988764322 001 11235788999999999
Q ss_pred EEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceecccc
Q 001386 637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1088)
Q Consensus 637 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 716 (1088)
+++++.||.|++||+.+++....+.
T Consensus 262 l~~~~~dg~i~i~d~~~~~~~~~~~------------------------------------------------------- 286 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSKEQTIQLP------------------------------------------------------- 286 (420)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEEC-------------------------------------------------------
T ss_pred EEEEcCCCeEEEEECCCCceeEEcc-------------------------------------------------------
Confidence 9999999999999987543211000
Q ss_pred ccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCC
Q 001386 717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSN 796 (1088)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1088)
..
T Consensus 287 ------------------------------------------------------------------------------~~ 288 (420)
T 3vl1_A 287 ------------------------------------------------------------------------------SK 288 (420)
T ss_dssp ------------------------------------------------------------------------------CT
T ss_pred ------------------------------------------------------------------------------cc
Confidence 01
Q ss_pred CCCCeeEEEEecCCC-EEEEEe-CCcEEEEEcCCcee-EEEecC-CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc
Q 001386 797 SQEAVPCFALSKNDA-YLFSAS-GGVISLYIVMTFKT-ILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 872 (1088)
Q Consensus 797 ~~~~v~~~~~s~dg~-~l~~~~-dg~i~iwd~~~~~~-~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~ 872 (1088)
|...|.+++|+|++. ++++++ ||.|++||+.+++. +..+.. |...+.++.+. ++++|++++.||.|++|++.+.
T Consensus 289 ~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 289 FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA--AGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE--TTEEEEEETTTEEEEEEEECCT
T ss_pred cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC--CCCEEEEecCCccEEEEeccCC
Confidence 566788888888887 788777 78888888887644 566665 56778888665 5789999999999999998873
Q ss_pred ---------eeeeeeccccCCeeEEEECCCCC---EEEEEeCCCcEEEEEcCC
Q 001386 873 ---------EVISKLEGHSKRVTGLVFSDALN---ILVSSGGDAQIFVWDVDG 913 (1088)
Q Consensus 873 ---------~~~~~l~~h~~~V~~l~~s~dg~---~las~s~Dg~i~iwd~~~ 913 (1088)
.....+.+|.+.|.+++|+|+++ .|++++.+|.+.+|+++.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 367 ESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp TCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred CCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 22334667899999999999999 788888899999999875
No 49
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-36 Score=345.30 Aligned_cols=384 Identities=13% Similarity=0.147 Sum_probs=286.9
Q ss_pred eeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeee-cCCCCCeEEEEECC-CCCEEEEEeC
Q 001386 339 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV-RDPGVSVNRVVWSP-DGSLLGVAYS 416 (1088)
Q Consensus 339 ~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~h~~~V~~l~~s~-dg~~las~~~ 416 (1088)
...|+|+++ .+++++ .|+ .+++.+.. + .+|.+.|.+++|+| ++++||+|+.
T Consensus 32 ~~~f~~~~~-~~~~~~------~w~-~~g~~~~~-------------------~~~~h~~~V~~~~~s~~~~~~l~s~s~ 84 (437)
T 3gre_A 32 YKEFGPIQE-IVRSPN------MGN-LRGKLIAT-------------------LMENEPNSITSSAVSPGETPYLITGSD 84 (437)
T ss_dssp CGGGCCCCC-CCCCCC------GGG-CCCCEEEE-------------------ECTTTTSCEEEEEEECSSSCEEEEEET
T ss_pred hhhcCCccc-cccccc------ccc-ccceEEee-------------------eccCCCCceEEEEECCCCCCEEEEecC
Confidence 346899998 466554 377 44555543 4 78999999999999 9999999999
Q ss_pred CCEEEEEEccC---CCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCC---CCceeEEeccCCccEEE
Q 001386 417 KHIVQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRTYSFEGHGAPVYS 490 (1088)
Q Consensus 417 dg~i~vwd~~~---~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~---~~~~~~~~~~~~~~v~~ 490 (1088)
||+|++||+.+ +...+....+ +|...|.+++|+|+++ ++++++.||.|++||+. +++.+..+.+| .+..
T Consensus 85 dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~ 159 (437)
T 3gre_A 85 QGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRK 159 (437)
T ss_dssp TSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEE
T ss_pred CceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccc--eeEE
Confidence 99999999987 5533333333 5999999999999999 89999999999999994 77777776655 5666
Q ss_pred EeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEE--EccCCCEEEEEeeCCCCceeEEEEeCCCCcee
Q 001386 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA--YSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1088)
Q Consensus 491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~--~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1088)
+.+.+.. +...+.++. +++++.++++++. ++.|++||+++++.+
T Consensus 160 ~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~ 205 (437)
T 3gre_A 160 INLKNFG------------------------------KNEYAVRMRAFVNEEKSLLVALTN----LSRVIIFDIRTLERL 205 (437)
T ss_dssp EEGGGGS------------------------------SCCCEEEEEEEECSSCEEEEEEET----TSEEEEEETTTCCEE
T ss_pred EEccCcc------------------------------cccCceEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCeee
Confidence 6654321 122334444 6789999999875 556999999999999
Q ss_pred EEEec--cccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEe----cCCCEEEEEeC
Q 001386 569 RTYQG--LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN----KNGTLLAVIAN 642 (1088)
Q Consensus 569 ~~~~~--~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s----~~~~~l~~~~~ 642 (1088)
..+.+ |. ..|.+++|+|+++++++++.||.|++||+++++++..+.... ...|.+++|+ |++.+|++++.
T Consensus 206 ~~~~~~~h~---~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~s~~~~~l~s~~~ 281 (437)
T 3gre_A 206 QIIENSPRH---GAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGD-HAPITHVEVCQFYGKNSVIVVGGSS 281 (437)
T ss_dssp EEEECCGGG---CCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTT-CEEEEEEEECTTTCTTEEEEEEEST
T ss_pred EEEccCCCC---CceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCC-CCceEEEEeccccCCCccEEEEEcC
Confidence 99988 55 899999999999999999999999999999999998886322 2368899665 46889999999
Q ss_pred CCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCc
Q 001386 643 ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSE 722 (1088)
Q Consensus 643 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~ 722 (1088)
||.|++||+.+++.+..+.++...+..+.++|.
T Consensus 282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------- 314 (437)
T 3gre_A 282 KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPI----------------------------------------------- 314 (437)
T ss_dssp TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCB-----------------------------------------------
T ss_pred CCcEEEEEcCCCcEEEEEEcCCCCCccceeccc-----------------------------------------------
Confidence 999999999988877777766655554444432
Q ss_pred ceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCee
Q 001386 723 CQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 802 (1088)
Q Consensus 723 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 802 (1088)
++.+ .+. .+.+..|...|.
T Consensus 315 -----------------------~~~l----~~~----------------------------------~~~~~~~~~~v~ 333 (437)
T 3gre_A 315 -----------------------EKGL----EEL----------------------------------NFCGIRSLNALS 333 (437)
T ss_dssp -----------------------CSSG----GGC----------------------------------CCCCCCSGGGGC
T ss_pred -----------------------cccc----ccc----------------------------------eecccccCCceE
Confidence 1111 000 000112777899
Q ss_pred EEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCC---CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee
Q 001386 803 CFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPS---PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 878 (1088)
Q Consensus 803 ~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~---~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l 878 (1088)
+++|+ ++++|++++ |+.|++||+.+++....+.+|. .......+++ +..+++.. |+...+.....+
T Consensus 334 ~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~ 403 (437)
T 3gre_A 334 TISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSVDDS 403 (437)
T ss_dssp CEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC----------
T ss_pred EEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------cccccccccCcc
Confidence 99999 778899887 9999999999999999888764 3456667776 55555444 334445555667
Q ss_pred ccccCCeeEEEECCC--CCEEEEEeCCCcEEEEE
Q 001386 879 EGHSKRVTGLVFSDA--LNILVSSGGDAQIFVWD 910 (1088)
Q Consensus 879 ~~h~~~V~~l~~s~d--g~~las~s~Dg~i~iwd 910 (1088)
..|.+.|++++|+++ +.+|++++.||.|+||+
T Consensus 404 ~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 404 LYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ---CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 789999999999998 78999999999999995
No 50
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.9e-35 Score=330.68 Aligned_cols=292 Identities=17% Similarity=0.217 Sum_probs=247.1
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCC------------------CCEEEEEecCCCCc
Q 001386 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV------------------GNVNDLAFSAPCKQ 455 (1088)
Q Consensus 394 ~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~------------------~~v~~~~~s~d~~~ 455 (1088)
+|...|.+++|||||++||+|+ ++.+++|++.+++.+. .+..|. ..|.+++|+||++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~- 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSS-
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence 5999999999999999999986 6789999999987654 343332 2499999999999
Q ss_pred EEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEE
Q 001386 456 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1088)
Q Consensus 456 l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 535 (1088)
+|++|+.|+.|++||+.+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||+++++....+. +...+.++
T Consensus 137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC--CCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 899999999999999999999999999999999999954 67899999999999999999887766655 44578999
Q ss_pred EEcc-CCCEEEEEeeCCCCceeEEEEeCCCCceeEEEecc----ccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 001386 536 AYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1088)
Q Consensus 536 ~~s~-~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1088)
+|+| +++++++++. ++.|++||..++..+..+... ..|...|.+++|+|+++++++++.|+.|++||+.+.
T Consensus 213 ~~~~~~~~~l~~~s~----d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~ 288 (393)
T 1erj_A 213 AVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 288 (393)
T ss_dssp EECSTTCCEEEEEET----TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred EEECCCCCEEEEEcC----CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 9999 8999999986 455999999999888777311 123389999999999999999999999999999763
Q ss_pred ------------eeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcc
Q 001386 611 ------------QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 678 (1088)
Q Consensus 611 ------------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 678 (1088)
.+...+..| ...|.+++|+|++.+|++++.|+.|++||..+++.+..+.+|...|.++++++....
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~ 366 (393)
T 1erj_A 289 NNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 366 (393)
T ss_dssp ------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTT
T ss_pred CCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCc
Confidence 234455544 346899999999999999999999999999999999999999999999999864322
Q ss_pred eeccccCCceeecCCCCCCCCcccccccCccceecccc
Q 001386 679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1088)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 716 (1088)
.|++..+++++.|++|++|++.
T Consensus 367 ----------------~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 367 ----------------GPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp ----------------CTTCEEEEEEETTSEEEEEEEE
T ss_pred ----------------CCCCCEEEEECCCCcEEECccc
Confidence 4788999999999999999965
No 51
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-36 Score=348.75 Aligned_cols=337 Identities=15% Similarity=0.238 Sum_probs=267.0
Q ss_pred ccEEEEEEeCCCC-EEEEE----------eCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEE
Q 001386 579 NSVSVVHFDTAKD-QILAA----------GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1088)
Q Consensus 579 ~~v~~~~~~~~~~-~l~~~----------s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1088)
..+.+++|+|+++ +++++ +.|+.|++||+.++.....+....+...|.+++|+|++++|++++.||.|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 3578899999987 88888 889999999999876332222222344699999999999999999999999
Q ss_pred EEeCCCCC----cccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcc
Q 001386 648 ILETPESN----SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSEC 723 (1088)
Q Consensus 648 iwd~~~~~----~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~ 723 (1088)
+|++.+.. ....+
T Consensus 93 vw~~~~~~~~~~~~~~~--------------------------------------------------------------- 109 (416)
T 2pm9_A 93 LYSTNEANNAINSMARF--------------------------------------------------------------- 109 (416)
T ss_dssp EECCSSTTSCCCEEEEC---------------------------------------------------------------
T ss_pred Eeecccccccccchhhc---------------------------------------------------------------
Confidence 99988521 11111
Q ss_pred eeeecCCccccccEEEEEEecC-CceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCee
Q 001386 724 QSLLLPSKVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 802 (1088)
Q Consensus 724 ~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 802 (1088)
..|...|.+++|+|+ +.++++++.||.|++|++........ .+ ..... .....|...|.
T Consensus 110 -------~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~------~~------~~~~~-~~~~~~~~~v~ 169 (416)
T 2pm9_A 110 -------SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPS------NY------TPLTP-GQSMSSVDEVI 169 (416)
T ss_dssp -------CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTT------TC------CCBCC-CCSCCSSCCCC
T ss_pred -------cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccc------cc------ccccc-ccccCCCCCee
Confidence 126677888899998 88889999999999998865541100 00 00000 01124788999
Q ss_pred EEEEecC-CCEEEEEe-CCcEEEEEcCCceeEEEecCC------CCCeEEEEEcCCCCcEEEEEeCCC---eEEEEEcCC
Q 001386 803 CFALSKN-DAYLFSAS-GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIGMDDS---TILIYNARS 871 (1088)
Q Consensus 803 ~~~~s~d-g~~l~~~~-dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~sp~d~~~lasg~~dg---~i~lwd~~~ 871 (1088)
+++|+|+ +.++++++ ++.|++||+.+++.+..+..+ ...+.+++|+|++..++++++.|+ .|++||+.+
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~ 249 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN 249 (416)
T ss_dssp EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS
T ss_pred EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC
Confidence 9999999 78899887 899999999999999998876 788999999994457999999999 999999998
Q ss_pred c-eeeeeec-cccCCeeEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCC-CEE
Q 001386 872 S-EVISKLE-GHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ-TRF 947 (1088)
Q Consensus 872 ~-~~~~~l~-~h~~~V~~l~~s~-dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg-~~l 947 (1088)
+ +.+..+. +|...|.+++|+| ++++|++++.||.|++||+.+++ .+....+|.. .|.+++|+|++ .+|
T Consensus 250 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~-----~~~~~~~~~~---~v~~~~~s~~~~~~l 321 (416)
T 2pm9_A 250 ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE-----QLSQFPARGN---WCFKTKFAPEAPDLF 321 (416)
T ss_dssp TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCC-----EEEEEECSSS---CCCCEEECTTCTTEE
T ss_pred CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc-----cceeecCCCC---ceEEEEECCCCCCEE
Confidence 6 6778888 8999999999999 99999999999999999999865 2333334443 68999999999 788
Q ss_pred EE-EeCCeEEEEEcCcceeeeeee----------------------------------cCCCcCEEEEEEeeCCCEEEEE
Q 001386 948 LL-VHETHLAIYEAEELTCLKQWF----------------------------------PISSVPISQATFSCDCRMVFTS 992 (1088)
Q Consensus 948 ~~-~~d~~i~vwd~~~~~~~~~~~----------------------------------~~h~~~v~~l~fs~dg~~l~s~ 992 (1088)
++ +.|+.|++||+.++....... ..|...+.+++|||||++|+++
T Consensus 322 ~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~ 401 (416)
T 2pm9_A 322 ACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQIT 401 (416)
T ss_dssp EECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBC
T ss_pred EEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEe
Confidence 88 578999999998876433210 1156778899999999999999
Q ss_pred eCCCcEEEEEcCCC
Q 001386 993 FVDGTLSIHEASNL 1006 (1088)
Q Consensus 993 s~dg~v~vwd~~~~ 1006 (1088)
+.||+|+||++.+.
T Consensus 402 ~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 402 PDGKGVSITNPKIS 415 (416)
T ss_dssp TTSSCBCCBCCCCC
T ss_pred CCCCeEEEEEeccC
Confidence 99999999999875
No 52
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.3e-34 Score=317.43 Aligned_cols=321 Identities=12% Similarity=0.143 Sum_probs=262.1
Q ss_pred cCCCCCCCchhhhcccccCCcccCCCch-hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeece
Q 001386 297 IPDYSPKSSLKKEMFQSFGETSFSDFPK-TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNF 375 (1088)
Q Consensus 297 ~~~fsP~~s~~~~~~~~~~~~~~~~~p~-~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~ 375 (1088)
+..|+|++..+......... .....+. .......+|.+.|++++|+|+|+ ++++++ ||.|++||+.+++....
T Consensus 14 ~~~~s~dg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~-dg~i~iw~~~~~~~~~~--- 87 (337)
T 1gxr_A 14 SFHVTADGQMQPVPFPPDAL-IGPGIPRHARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSP--- 87 (337)
T ss_dssp EEEECSSSCEEECCCCTTSS-SSTTCCSEEEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCSC---
T ss_pred EEEECCCCCEEEeecCCCcE-eccccCCccccceeccCCCceEEEEEecCCc-EEEEcC-CCeEEEEECCCCCceee---
Confidence 35677777776543322211 1122221 22233348999999999999999 688888 99999999998764422
Q ss_pred eeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCc
Q 001386 376 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ 455 (1088)
Q Consensus 376 ~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~ 455 (1088)
+......+|...|.+++|+|++++|++++.|+.|++||+.+++.. ....+..|...|.+++|+|+++
T Consensus 88 -----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~- 154 (337)
T 1gxr_A 88 -----------VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDSK- 154 (337)
T ss_dssp -----------SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECTTSS-
T ss_pred -----------eecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc-eeeecccCCCceEEEEECCCCC-
Confidence 111113379999999999999999999999999999999987632 2336778999999999999999
Q ss_pred EEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEE
Q 001386 456 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1088)
Q Consensus 456 l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 535 (1088)
++++++.|+.|++||+.+++.+..+.+|...|.+++|++ ++.++++++.||.|++||+++.+....+. +...+.++
T Consensus 155 -~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~ 230 (337)
T 1gxr_A 155 -VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN--DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSL 230 (337)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred -EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC--CCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEE
Confidence 899999999999999999999999999999999999954 67899999999999999999887766654 56689999
Q ss_pred EEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEE
Q 001386 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615 (1088)
Q Consensus 536 ~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~ 615 (1088)
+|+|+++++++++. ++.|++||..+++.. .+..|. ..+.+++|+|+++++++++.||.|++||+.+++.+..
T Consensus 231 ~~s~~~~~l~~~~~----~~~i~~~~~~~~~~~-~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~ 302 (337)
T 1gxr_A 231 GYCPTGEWLAVGME----SSNVEVLHVNKPDKY-QLHLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ 302 (337)
T ss_dssp EECTTSSEEEEEET----TSCEEEEETTSSCEE-EECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EECCCCCEEEEEcC----CCcEEEEECCCCCeE-EEcCCc---cceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE
Confidence 99999999999875 445999999988754 455565 8999999999999999999999999999999988866
Q ss_pred EeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeC
Q 001386 616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1088)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1088)
... ...+.+++|+|++++|++++.||.|++|++
T Consensus 303 ~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 303 SKE---SSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEC---SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ecC---CCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 543 235899999999999999999999999986
No 53
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.9e-35 Score=357.36 Aligned_cols=298 Identities=18% Similarity=0.248 Sum_probs=252.3
Q ss_pred eeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC
Q 001386 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1088)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~ 406 (1088)
...|.+|++.|++++|+|++..+|++|+.|++|+|||+.++...... ....+.+|...|.+++|+|
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~v~~s~ 440 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGV--------------AQRRLTGHSHFVEDVVLSS 440 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCE--------------EEEEEECCSSCEEEEEECT
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccc--------------ccceecCCCCcEEEEEECC
Confidence 45688999999999999987558999999999999999876432110 1123788999999999999
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe---cc
Q 001386 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---EG 483 (1088)
Q Consensus 407 dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~---~~ 483 (1088)
+|++|++|+.|++|+|||+.+++..+ .+.+|...|.+++|+|+++ .+++++.|++|++||.......... .+
T Consensus 441 ~g~~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~ 515 (694)
T 3dm0_A 441 DGQFALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGEG 515 (694)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTTS
T ss_pred CCCEEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCCC
Confidence 99999999999999999999986554 6789999999999999999 7999999999999997654333222 46
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 563 (1088)
|...|.+++|+++.....+++++.||.|++||++.......+..|...|.+++|+|+|++|++++. ++.|++||+.
T Consensus 516 h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~~ 591 (694)
T 3dm0_A 516 HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDLA 591 (694)
T ss_dssp CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEETT
T ss_pred CCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEECC
Confidence 889999999987655578999999999999999999988899999999999999999999999986 5569999999
Q ss_pred CCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCC-----------------CCCCc
Q 001386 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-----------------LPENP 626 (1088)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~ 626 (1088)
+++.+..+..+ ..+.+++|+|++.++++++ ++.|++||+.+++.+..+..+.. ...+.
T Consensus 592 ~~~~~~~~~~~----~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (694)
T 3dm0_A 592 EGKKLYSLEAN----SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCT 666 (694)
T ss_dssp TTEEEECCBCS----SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEE
T ss_pred CCceEEEecCC----CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEee
Confidence 99888776543 4799999999988777665 56699999999998887754311 11256
Q ss_pred eEEEecCCCEEEEEeCCCcEEEEeCC
Q 001386 627 RICFNKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
+++|+|+|++|++|+.||.|++|++.
T Consensus 667 ~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 667 SLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred eEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 89999999999999999999999985
No 54
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=5.5e-34 Score=329.51 Aligned_cols=329 Identities=16% Similarity=0.225 Sum_probs=281.3
Q ss_pred heeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEEC
Q 001386 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1088)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1088)
..+.|.+|.+.|.. +++++|+ ++++|+.||+|++||+.+++.+.. +.+|...|.+++|+
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~ 168 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMR 168 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEE
T ss_pred eeEEecccCCCcEE-EEEEcCC-EEEEEECCCcEEEEECCCCcEEEE-------------------EcCCCCCEEEEEec
Confidence 34678999987643 3556787 699999999999999999987765 77899999999997
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCC
Q 001386 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1088)
Q Consensus 406 ~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 485 (1088)
+.+|++|+.||+|++||+.+++.+. .+.+|...|.+++|+ ++ .+++++.|+.|++||+.+++++..+.+|.
T Consensus 169 --~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~ 239 (445)
T 2ovr_B 169 --DNIIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHV 239 (445)
T ss_dssp --TTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCS
T ss_pred --CCEEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCc
Confidence 6799999999999999999987554 688999999999996 45 69999999999999999999999999999
Q ss_pred ccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001386 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1088)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1088)
..|.++++ ++.++++++.||.|++||+++.+....+..+...+.+++| ++.++++++. ++.|++||+.++
T Consensus 240 ~~v~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~----d~~i~i~d~~~~ 309 (445)
T 2ovr_B 240 AAVRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL----DTSIRVWDVETG 309 (445)
T ss_dssp SCEEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET----TSCEEEEETTTC
T ss_pred ccEEEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC----CCeEEEEECCCC
Confidence 99999988 5678999999999999999999988899999999999999 8899999976 455999999999
Q ss_pred ceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCC-CCCCCceEEEecCCCEEEEEeCCC
Q 001386 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNKNGTLLAVIANEN 644 (1088)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~dg 644 (1088)
+.+..+.+|. ..+.++.++ ++++++++.||.|++||+.+++.+..+..+. +...|.+++|+ ++++++++.||
T Consensus 310 ~~~~~~~~~~---~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg 382 (445)
T 2ovr_B 310 NCIHTLTGHQ---SLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDG 382 (445)
T ss_dssp CEEEEECCCC---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTS
T ss_pred CEEEEEcCCc---ccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCC
Confidence 9999998887 788877764 6799999999999999999999999987632 34468888885 68999999999
Q ss_pred cEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcce
Q 001386 645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 724 (1088)
Q Consensus 645 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~ 724 (1088)
.|++||+.+++.+..+..
T Consensus 383 ~v~iwd~~~~~~~~~~~~-------------------------------------------------------------- 400 (445)
T 2ovr_B 383 TVKLWDLKTGEFIRNLVT-------------------------------------------------------------- 400 (445)
T ss_dssp EEEEEETTTCCEEEEEEE--------------------------------------------------------------
T ss_pred eEEEEECCCCceeeeeec--------------------------------------------------------------
Confidence 999999998765443311
Q ss_pred eeecCCccccccEEEEEEecCCceEEEeccccc----eEEEEccCC
Q 001386 725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGV----HLMWRWPRN 766 (1088)
Q Consensus 725 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~----v~iw~~~~~ 766 (1088)
.....+...|.+++|+|++..+++++.||. +.+||+...
T Consensus 401 ---~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 401 ---LESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp ---CTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred ---cccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 001126678999999999999999999997 999997643
No 55
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.8e-34 Score=316.83 Aligned_cols=298 Identities=15% Similarity=0.227 Sum_probs=239.4
Q ss_pred CCCCceeEEEeccccccccEEEEEEeCC-CCEEEEEeCCCcEEEEEcCCCe-----eeEEEeCCCCCCCCceEEEecCCC
Q 001386 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQ-----LLTTIDAGGGLPENPRICFNKNGT 635 (1088)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~~~-----~~~~~~~~~~~~~v~~v~~s~~~~ 635 (1088)
.++.++..++++|. +.|++++|+|+ +++|++|+.|++|++||+.+++ +...+..| ...|.+++|+|+++
T Consensus 25 ~~~~~l~~tL~GH~---~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h--~~~V~~~~~s~dg~ 99 (340)
T 4aow_A 25 TEQMTLRGTLKGHN---GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH--SHFVSDVVISSDGQ 99 (340)
T ss_dssp -CEEEEEEEECCCS---SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCC--SSCEEEEEECTTSS
T ss_pred CCceEEEEEECCcc---CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCC--CCCEEEEEECCCCC
Confidence 34455667889988 99999999998 5899999999999999987654 34555555 44799999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccc
Q 001386 636 LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 715 (1088)
Q Consensus 636 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~ 715 (1088)
+|++++.|+.|++|+...........
T Consensus 100 ~l~s~~~d~~i~~~~~~~~~~~~~~~------------------------------------------------------ 125 (340)
T 4aow_A 100 FALSGSWDGTLRLWDLTTGTTTRRFV------------------------------------------------------ 125 (340)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEE------------------------------------------------------
T ss_pred EEEEEcccccceEEeecccceeeeec------------------------------------------------------
Confidence 99999999999999877432111000
Q ss_pred cccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCC
Q 001386 716 LFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDS 795 (1088)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1088)
T Consensus 126 -------------------------------------------------------------------------------- 125 (340)
T 4aow_A 126 -------------------------------------------------------------------------------- 125 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCcee-EEEecCCCCCeEEEEEcCCC-CcEEEEEeCCCeEEEEEcCCc
Q 001386 796 NSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKT-ILTIMPPSPTATSLAFNPHD-NNVIAIGMDDSTILIYNARSS 872 (1088)
Q Consensus 796 ~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~sp~d-~~~lasg~~dg~i~lwd~~~~ 872 (1088)
.+...+....+++++.++++++ |+.+++||...... .....+|...+.+++|+++. ..++++++.|+.|++||+.++
T Consensus 126 ~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~ 205 (340)
T 4aow_A 126 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 205 (340)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT
T ss_pred CCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC
Confidence 0233445566667777777776 67788887765443 33456788999999999832 357889999999999999999
Q ss_pred eeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeC
Q 001386 873 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 952 (1088)
Q Consensus 873 ~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d 952 (1088)
+.+..+.+|.+.|++++|+|++++|++++.||+|++||+.+.+. +.....+. .+.+++|+|++.+++++.|
T Consensus 206 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~-----~~~~~~~~----~v~~~~~~~~~~~~~~~~d 276 (340)
T 4aow_A 206 KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH-----LYTLDGGD----IINALCFSPNRYWLCAATG 276 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE-----EEEEECSS----CEEEEEECSSSSEEEEEET
T ss_pred ceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCce-----eeeecCCc----eEEeeecCCCCceeeccCC
Confidence 99999999999999999999999999999999999999998653 23333332 5899999999999998999
Q ss_pred CeEEEEEcCcceeeeeee--------cCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCc
Q 001386 953 THLAIYEAEELTCLKQWF--------PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1007 (1088)
Q Consensus 953 ~~i~vwd~~~~~~~~~~~--------~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~ 1007 (1088)
+.|++||+.++..+..+. .+|...|++++|+|||++|++|+.||+|+|||+.+|.
T Consensus 277 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 277 PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp TEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 999999999887766542 3688999999999999999999999999999999985
No 56
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.2e-33 Score=328.90 Aligned_cols=290 Identities=18% Similarity=0.239 Sum_probs=252.8
Q ss_pred hhheeecccCCCCc-eeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEE
Q 001386 324 KTVAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V-~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 402 (1088)
.....+|.+|.+.| .++.| ++. ++++|+.||+|++||+.+++.+.. +.+|.+.|.++
T Consensus 111 ~~~~~~l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h~~~V~~l 168 (464)
T 3v7d_B 111 VPQRTTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWAL 168 (464)
T ss_dssp CCEEEEEECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCCSSCEEEE
T ss_pred CcceEEEcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCCCcCEEEE
Confidence 34567889999886 56565 556 799999999999999999987765 77899999999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecC--CCCcEEEEEEeCCCcEEEEeCCCCce---
Q 001386 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSR--- 477 (1088)
Q Consensus 403 ~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~--d~~~l~l~s~s~d~~i~vwd~~~~~~--- 477 (1088)
+|+|++ +|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ +++ ++++++.|++|++||+.++..
T Consensus 169 ~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~ 242 (464)
T 3v7d_B 169 KYAHGG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPD 242 (464)
T ss_dssp EECSTT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC--
T ss_pred EEcCCC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCccccc
Confidence 999988 99999999999999999987554 6889999999999994 566 899999999999999988763
Q ss_pred --------------------eEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEE
Q 001386 478 --------------------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAY 537 (1088)
Q Consensus 478 --------------------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 537 (1088)
+..+.+|...|.++.. ++.++++++.||.|++||+++.+....+..+...|.+++|
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 318 (464)
T 3v7d_B 243 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG----HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY 318 (464)
T ss_dssp ----CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred ccccCCcceEeeccCCCeEEEEEccCccceEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEE
Confidence 4567889999988843 5579999999999999999999999999999999999999
Q ss_pred ccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEe
Q 001386 538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1088)
Q Consensus 538 s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1088)
+|+++++++++. ++.|++||+.+++.+..+.+|. ..|.++.|+ +.++++++.||.|++||+.++.......
T Consensus 319 ~~~~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 389 (464)
T 3v7d_B 319 DHERKRCISASM----DTTIRIWDLENGELMYTLQGHT---ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH 389 (464)
T ss_dssp ETTTTEEEEEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred cCCCCEEEEEeC----CCcEEEEECCCCcEEEEEeCCC---CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec
Confidence 999999999986 4559999999999999999888 899999997 5899999999999999999988776664
Q ss_pred CCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCccc
Q 001386 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD 658 (1088)
Q Consensus 618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 658 (1088)
.. ..+..++|+++++++++++ ||.|++||+.+++.+.
T Consensus 390 ~~---~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 390 HT---NLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH 426 (464)
T ss_dssp CT---TCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEE
T ss_pred CC---CCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEe
Confidence 32 2467899999999999998 8999999999876554
No 57
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.4e-34 Score=327.57 Aligned_cols=298 Identities=15% Similarity=0.138 Sum_probs=249.0
Q ss_pred hhheeecccCCCCceeeeecCCC-CeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQ-HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg-~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 402 (1088)
....+++.+|.+.|++++|+|+| + +|++|+.||.|+|||+.+++...... ..+|...|.++
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-----------------~~~h~~~v~~~ 124 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPT-TVAVGSKGGDIILWDYDVQNKTSFIQ-----------------GMGPGDAITGM 124 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTT-EEEEEEBTSCEEEEETTSTTCEEEEC-----------------CCSTTCBEEEE
T ss_pred cceEEeccCCCCCEEEEEECCCCCC-EEEEEcCCCeEEEEeCCCcccceeee-----------------cCCcCCceeEE
Confidence 35567889999999999999999 6 79999999999999999887664311 34799999999
Q ss_pred EECC-CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe
Q 001386 403 VWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1088)
Q Consensus 403 ~~s~-dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~ 481 (1088)
+|+| ++++|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++ ++++++.|+.|++||+ +++.+..+
T Consensus 125 ~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~ 200 (383)
T 3ei3_B 125 KFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKE 200 (383)
T ss_dssp EEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEE
T ss_pred EeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEe
Confidence 9999 789999999999999999996 33443333345568899999999999 8999999999999998 68889999
Q ss_pred ccCCccEEEEeeeeeCCce-EEEEEecCCeEEEEECCC----CCceEEecCCCCceEEEEEcc-CCCEEEEEeeCCCCce
Q 001386 482 EGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDS----LGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGES 555 (1088)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~ 555 (1088)
.+|...|.+++|++ ++. ++++++.||.|++||+++ ......+ .+...|.+++|+| ++++|++++. ++
T Consensus 201 ~~h~~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~ 273 (383)
T 3ei3_B 201 KLHKAKVTHAEFNP--RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RN 273 (383)
T ss_dssp ECSSSCEEEEEECS--SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SS
T ss_pred ccCCCcEEEEEECC--CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CC
Confidence 99999999999965 556 899999999999999987 3344444 6888999999999 9999999975 55
Q ss_pred eEEEEeCCCCceeEEEeccccc--------------cccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCC
Q 001386 556 FLVEWNESEGAIKRTYQGLQLQ--------------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621 (1088)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1088)
.|++||+.+++....+.+|... ...+..++|+|++++ +++.|+.|++||+.+++.+..+..+.+
T Consensus 274 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~ 351 (383)
T 3ei3_B 274 EIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNA 351 (383)
T ss_dssp EEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTB
T ss_pred cEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCC
Confidence 6999999999887777755311 123445666777766 777999999999999999999987654
Q ss_pred CCCCceEEEecCCCEEEEEeCCCcEEEEeCCC
Q 001386 622 LPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1088)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 653 (1088)
...+..++|+|++++|++++ |+.|++|++.+
T Consensus 352 ~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 352 AGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 55677789999999999997 89999999874
No 58
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.6e-34 Score=329.10 Aligned_cols=305 Identities=12% Similarity=0.110 Sum_probs=257.2
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
.+.++|.+|.+.|++++|+| + +|++|+.||+|+|||+.+++...... ....+.+|...|.+++|
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~~~h~~~v~~~~~ 70 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKD-------------KSYSHFVHKSGLHHVDV 70 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGG-------------GEEEEECCTTCEEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCC-------------cceEEecCCCcEEEEEE
Confidence 45678899999999999999 4 78999999999999999987211100 00116689999999999
Q ss_pred CCC----C---CEEEEEeCCCEEEEEEccCCCccc--ceeEeccC-----CCCEEEEEec----CCCCcEE-EEEEeCCC
Q 001386 405 SPD----G---SLLGVAYSKHIVQLYAYHGGSDAR--QQLEIDAH-----VGNVNDLAFS----APCKQIS-VITCGDDK 465 (1088)
Q Consensus 405 s~d----g---~~las~~~dg~i~vwd~~~~~~~~--~~~~~~~h-----~~~v~~~~~s----~d~~~l~-l~s~s~d~ 465 (1088)
+|+ | ++|++++.|+.|++||+.+++... ....+..| ...|.+++|+ |+++ . +++++.|+
T Consensus 71 ~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~dg 148 (397)
T 1sq9_A 71 LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDVKG 148 (397)
T ss_dssp EEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C--EEEEEEETTS
T ss_pred ecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeCCC
Confidence 999 9 999999999999999999887510 02367778 5899999999 9999 7 99999999
Q ss_pred cEEEEeCCC------CceeE-----Eec-------cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecC
Q 001386 466 TIKVWDAVT------GSRTY-----SFE-------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA 527 (1088)
Q Consensus 466 ~i~vwd~~~------~~~~~-----~~~-------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 527 (1088)
.|++||+.+ ++.+. .+. .|...|.+++|++ ++ ++++++.||.|++||+++.+....+..
T Consensus 149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~ 225 (397)
T 1sq9_A 149 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFES 225 (397)
T ss_dssp CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCceeEEEec
Confidence 999999998 77776 774 4889999999954 66 999999999999999999888888888
Q ss_pred ---C---CCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEec-------------cccccccEEEEEEeC
Q 001386 528 ---P---GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG-------------LQLQHNSVSVVHFDT 588 (1088)
Q Consensus 528 ---~---~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-------------~~~~~~~v~~~~~~~ 588 (1088)
| ...+.+++|+|++++|++++.++ ..+.|++||+.+++.+..+.+ |. ..|.+++|+|
T Consensus 226 ~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~-~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~ 301 (397)
T 1sq9_A 226 QHSMINNSNSIRSVKFSPQGSLLAIAHDSN-SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS---SWVMSLSFND 301 (397)
T ss_dssp CC---CCCCCEEEEEECSSTTEEEEEEEET-TEEEEEEEETTTCCEEEEECBC--------CCBSBS---SCEEEEEECS
T ss_pred cccccccCCccceEEECCCCCEEEEEecCC-CCceEEEEECCCCcccceeccCcccccccccccccC---CcEEEEEECC
Confidence 7 88999999999999999998630 016799999999999999988 66 8999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeeeEEEe------CC-------------CCCCCCceEEEecCC----------CEEEE
Q 001386 589 AKDQILAAGDDHVIKIWDMNKVQLLTTID------AG-------------GGLPENPRICFNKNG----------TLLAV 639 (1088)
Q Consensus 589 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~v~~s~~~----------~~l~~ 639 (1088)
++++|++++.||.|++||+.+++.+..+. .+ .+...|.+++|+|++ ++|++
T Consensus 302 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s 381 (397)
T 1sq9_A 302 SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCC 381 (397)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEE
T ss_pred CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEE
Confidence 99999999999999999999999999998 44 003469999999998 79999
Q ss_pred EeCCCcEEEEeCCCC
Q 001386 640 IANENRIKILETPES 654 (1088)
Q Consensus 640 ~~~dg~i~iwd~~~~ 654 (1088)
++.||.|++|++.++
T Consensus 382 ~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 382 VCLDRSIRWFREAGG 396 (397)
T ss_dssp EETTTEEEEEEEEC-
T ss_pred ecCCCcEEEEEcCCC
Confidence 999999999998765
No 59
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-36 Score=346.00 Aligned_cols=342 Identities=10% Similarity=0.057 Sum_probs=251.3
Q ss_pred hheeecccCCCCceeeeecCCC---------CeEEEE-------------------EcccCcEEEEecCCCcceeeecee
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQ---------HTLLLV-------------------GTNVGDTGLWDVNSGQKLFIRNFK 376 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg---------~~lla~-------------------g~~dg~i~iwd~~~~~~~~~~~~~ 376 (1088)
.+..++. +.+.|++|+|+|++ + +||+ ++.|++|+|||+.+++.....
T Consensus 125 r~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~--- 199 (524)
T 2j04_B 125 RRGFIYN-VGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVK--- 199 (524)
T ss_dssp SCEEEEE-CCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC------------------CEEEEEEEEETTTCCEEE---
T ss_pred cceEEEE-CCCceeEEEecccCCCCccCcCCe-EEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceE---
Confidence 3333444 46689999999986 4 5665 446789999999887643210
Q ss_pred eeeeccccccceeeeecCCCCCeEEEEECCC------CCEEEEEeCCCEEEEEEccCCCcc--------cceeEeccCCC
Q 001386 377 VWDIGACSMLFKTALVRDPGVSVNRVVWSPD------GSLLGVAYSKHIVQLYAYHGGSDA--------RQQLEIDAHVG 442 (1088)
Q Consensus 377 ~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d------g~~las~~~dg~i~vwd~~~~~~~--------~~~~~~~~h~~ 442 (1088)
...+.+|.+.|.+++|+|+ +.+||+++.||+|++||+.+++.. .....+.+|..
T Consensus 200 ------------~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~ 267 (524)
T 2j04_B 200 ------------VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADS 267 (524)
T ss_dssp ------------EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTT
T ss_pred ------------EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCC
Confidence 0114568899999999997 579999999999999999877532 12346789999
Q ss_pred CEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc-eeEEeccCCccEEEEeeeeeCCc-eEEEEEecCCeEEEEECCCCC
Q 001386 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLG 520 (1088)
Q Consensus 443 ~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~ 520 (1088)
.|++++|++++ .|++|+.||+|++||+.++. +...+.+|...|.++++..++++ .+|++++.||+|++||+++.+
T Consensus 268 ~v~sv~~s~~~---~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~ 344 (524)
T 2j04_B 268 LITTFDFLSPT---TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA 344 (524)
T ss_dssp CEEEEEESSSS---EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH
T ss_pred CEEEEEecCCC---eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC
Confidence 99999999864 59999999999999999874 45678999999999954435666 799999999999999998876
Q ss_pred ceEEecCCC--CceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeC
Q 001386 521 ARVDYDAPG--LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 598 (1088)
Q Consensus 521 ~~~~~~~~~--~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~ 598 (1088)
....+..+. ..+.+++|+|+++.+++++. +..|++||++++.++..+.+|. ..|.+++|+|++++|++|+.
T Consensus 345 ~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~----d~tv~lwd~~~~~~~~~l~gH~---~~V~sva~Sp~g~~l~Sgs~ 417 (524)
T 2j04_B 345 TTKTTVSRFRGSNLVPVVYCPQIYSYIYSDG----ASSLRAVPSRAAFAVHPLVSRE---TTITAIGVSRLHPMVLAGSA 417 (524)
T ss_dssp HHCEEEEECSCCSCCCEEEETTTTEEEEECS----SSEEEEEETTCTTCCEEEEECS---SCEEEEECCSSCCBCEEEET
T ss_pred cccccccccccCcccceEeCCCcCeEEEeCC----CCcEEEEECcccccceeeecCC---CceEEEEeCCCCCeEEEEEC
Confidence 655554443 35789999999999988864 5569999999999888888888 89999999999999999999
Q ss_pred CCcEEEEEcCCCeeeEEEeCC---CCCCCCceEEEecCCCEEEEEeCCCcEEEEeCC-CCCcccccccccCcceeeeecC
Q 001386 599 DHVIKIWDMNKVQLLTTIDAG---GGLPENPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAAGVLSDNLRKLSVNP 674 (1088)
Q Consensus 599 dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~p 674 (1088)
||+|++||+..+ .+...... .....+..++|+|++..+. ... .+.+|... ++..+..+.+|...|.+++|+|
T Consensus 418 Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp 493 (524)
T 2j04_B 418 DGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNE 493 (524)
T ss_dssp TTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC-------------CCCSCCCEEECC
T ss_pred CCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCC
Confidence 999999998654 22221110 0111356889999998553 222 33344333 4567778889999999999996
Q ss_pred CCcceeccccCCceeecCCCCCCCCcccccccCccceecccc
Q 001386 675 ISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1088)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 716 (1088)
.+ +.+..+++|+.+|.|+||++.
T Consensus 494 ~~-------------------~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 494 TS-------------------AGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp ST-------------------TTTTEEEEECTTSEEEEEECS
T ss_pred CC-------------------CccHHHHhhccCceEEEEEcc
Confidence 52 235689999999999999976
No 60
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-33 Score=318.78 Aligned_cols=291 Identities=12% Similarity=0.111 Sum_probs=258.6
Q ss_pred eeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC
Q 001386 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1088)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~ 406 (1088)
...|.+|.+.|++++|+|+|+ +|++|+.||.|+|||+.+++.+.. +.+|...|.+++|+|
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~~ 84 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDVDC 84 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECT
T ss_pred cEEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEEcC
Confidence 356889999999999999998 789999999999999999987765 778999999999999
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCC-----CcEEEEeCCCCc-----
Q 001386 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTGS----- 476 (1088)
Q Consensus 407 dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d-----~~i~vwd~~~~~----- 476 (1088)
++++|++++.||.|++||+.+++.+. .+. |...|.+++|+|+++ ++++++.+ +.|++||+.++.
T Consensus 85 ~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~ 158 (369)
T 3zwl_B 85 FTKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHEL 158 (369)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCCE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccceee
Confidence 99999999999999999999987665 344 888999999999999 78889888 999999988664
Q ss_pred ------eeEEeccCCc--cEEEEeeeeeCCceEEEEEecCCeEEEEECCC-CCceEEecCCCCceEEEEEccCCCEEEEE
Q 001386 477 ------RTYSFEGHGA--PVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1088)
Q Consensus 477 ------~~~~~~~~~~--~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 547 (1088)
.+..+..|.. .+.+++|++ ++.++++++.||.|++||+++ ......+..+...|.+++|+|++++|+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 236 (369)
T 3zwl_B 159 TKVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITS 236 (369)
T ss_dssp EEECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred cccccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEe
Confidence 3455566666 899999955 677999999999999999998 66777888899999999999999999998
Q ss_pred eeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCC--------------cEEEEEcCCCeee
Q 001386 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--------------VIKIWDMNKVQLL 613 (1088)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--------------~i~iwd~~~~~~~ 613 (1088)
+. ++.|++||+.+++.+..+.. . ..+..++|+|+++++++++.++ .+++||..+++.+
T Consensus 237 ~~----d~~i~v~d~~~~~~~~~~~~-~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 308 (369)
T 3zwl_B 237 SR----DTNSFLVDVSTLQVLKKYET-D---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI 308 (369)
T ss_dssp ET----TSEEEEEETTTCCEEEEEEC-S---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEE
T ss_pred cC----CceEEEEECCCCceeeeecC-C---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcch
Confidence 75 55699999999999888873 3 6899999999999999999888 8999999999999
Q ss_pred EEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 614 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1088)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 655 (1088)
..+..+.. .|.+++|+|++++|++++.||.|++|++..+.
T Consensus 309 ~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 309 GRVQGHFG--PLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp EEEECCSS--CEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred hheecccC--cEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 99987644 69999999999999999999999999998654
No 61
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.2e-33 Score=323.06 Aligned_cols=319 Identities=18% Similarity=0.276 Sum_probs=270.8
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+.+|.+.|.. +++++|++|++|+.||+|++||+.+++.+. .+.+|...|.+++|+ ++ ++++|+.||+|++||
T Consensus 114 l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVWN 185 (445)
T ss_dssp EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEEE
T ss_pred ecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEEE
Confidence 6789887533 355579999999999999999999987655 688999999999998 45 799999999999999
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCC
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
+.+++++..+.+|...|.++.+. +..+++++.||.|++||+.+.+....+..+...+.+++| +++++++++.
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-- 257 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY-- 257 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET--
T ss_pred CCcCcEEEEECCCCCcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC--
Confidence 99999999999999999999883 358999999999999999999999999999999999998 7889999876
Q ss_pred CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEe
Q 001386 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1088)
++.|++||..+++.+..+.+|. ..+.++.| ++.++++++.||.|++||+.+++.+..+..+.. .+.++.
T Consensus 258 --dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~-- 326 (445)
T 2ovr_B 258 --DFMVKVWDPETETCLHTLQGHT---NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGME-- 326 (445)
T ss_dssp --TSCEEEEEGGGTEEEEEECCCS---SCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS--CEEEEE--
T ss_pred --CCEEEEEECCCCcEeEEecCCC---CceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc--cEEEEE--
Confidence 4559999999999999999887 88999998 789999999999999999999999998876643 355554
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccce
Q 001386 632 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 711 (1088)
Q Consensus 632 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 711 (1088)
++++++++++.||.|++||+.+++.+..+..+
T Consensus 327 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------------------------------------------ 358 (445)
T 2ovr_B 327 LKDNILVSGNADSTVKIWDIKTGQCLQTLQGP------------------------------------------------ 358 (445)
T ss_dssp EETTEEEEEETTSCEEEEETTTCCEEEEECST------------------------------------------------
T ss_pred EeCCEEEEEeCCCeEEEEECCCCcEEEEEccC------------------------------------------------
Confidence 46779999999999999998765332211100
Q ss_pred eccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeec
Q 001386 712 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVND 791 (1088)
Q Consensus 712 vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1088)
T Consensus 359 -------------------------------------------------------------------------------- 358 (445)
T 2ovr_B 359 -------------------------------------------------------------------------------- 358 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEe-----cCCCCCeEEEEEcCCCCcEEEEEeCCCe--
Q 001386 792 TTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI-----MPPSPTATSLAFNPHDNNVIAIGMDDST-- 863 (1088)
Q Consensus 792 ~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~-----~~~~~~i~~l~~sp~d~~~lasg~~dg~-- 863 (1088)
..|...|.+++++ +.++++++ ||.|++||+.+++.+..+ ..|...|.+++|+| ++.++++|+.||+
T Consensus 359 ---~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~dg~~~ 432 (445)
T 2ovr_B 359 ---NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEE 432 (445)
T ss_dssp ---TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSC
T ss_pred ---CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEcccCCCCc
Confidence 0155667777774 56888887 889999999999888887 46788999999999 8999999999997
Q ss_pred --EEEEEcCC
Q 001386 864 --ILIYNARS 871 (1088)
Q Consensus 864 --i~lwd~~~ 871 (1088)
|.|||+..
T Consensus 433 ~~l~v~df~~ 442 (445)
T 2ovr_B 433 TKLLVLDFDV 442 (445)
T ss_dssp CEEEEEECCC
T ss_pred cEEEEEECCC
Confidence 99999874
No 62
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=310.27 Aligned_cols=293 Identities=20% Similarity=0.267 Sum_probs=255.8
Q ss_pred hhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1088)
....++|.+|.+.|++++| |+++ +|++|+.||.|++||+.+++.... +..|...|.+++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~v~~~~ 66 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGTV-------------------VYTGQGFLNSVC 66 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEEE-------------------EEECSSCEEEEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEEE-------------------eecCCccEEEEE
Confidence 3567889999999999999 9998 689999999999999988876654 556899999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEecc
Q 001386 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1088)
Q Consensus 404 ~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~ 483 (1088)
|+|++++|++++.|+.|++|++...........+.+|...|.+++| +++ .+++++.|+.|++|| .++.+..+..
T Consensus 67 ~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~ 140 (313)
T 3odt_A 67 YDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQA 140 (313)
T ss_dssp EETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEEC
T ss_pred ECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEeccc
Confidence 9999999999999999999999877655555578899999999999 456 799999999999999 7788889999
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecC-CCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 562 (1088)
|...+.++++.+. ++.++++++.||.|++|| .......+.. +...+.+++|+|++. +++++. ++.|++||+
T Consensus 141 ~~~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~ 212 (313)
T 3odt_A 141 HNASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDM 212 (313)
T ss_dssp CSSCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEET
T ss_pred CCCceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEEC
Confidence 9999999999763 557999999999999999 3445555555 788999999999999 777764 566999999
Q ss_pred CCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC
Q 001386 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1088)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1088)
.+++.+..+.+|. ..+.+++|+|++ .+++++.||.|++||+.+++.+..+..+.. .+.+++|+|+++ +++++.
T Consensus 213 ~~~~~~~~~~~~~---~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~~~~~~ 285 (313)
T 3odt_A 213 HTGDVLRTYEGHE---SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI--SIWSVDCMSNGD-IIVGSS 285 (313)
T ss_dssp TTCCEEEEEECCS---SCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS--CEEEEEECTTSC-EEEEET
T ss_pred CchhhhhhhhcCC---ceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc--eEEEEEEccCCC-EEEEeC
Confidence 9999999999888 899999999999 699999999999999999999999987644 689999999998 667899
Q ss_pred CCcEEEEeCCCCCccc
Q 001386 643 ENRIKILETPESNSVD 658 (1088)
Q Consensus 643 dg~i~iwd~~~~~~~~ 658 (1088)
||.|++|++.+++...
T Consensus 286 dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 286 DNLVRIFSQEKSRWAS 301 (313)
T ss_dssp TSCEEEEESCGGGCCC
T ss_pred CCcEEEEeCCCCceee
Confidence 9999999999775544
No 63
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-35 Score=339.68 Aligned_cols=350 Identities=10% Similarity=0.047 Sum_probs=245.9
Q ss_pred CCCCeEEEEECCCC---------CEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCC
Q 001386 395 PGVSVNRVVWSPDG---------SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1088)
Q Consensus 395 h~~~V~~l~~s~dg---------~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~ 465 (1088)
+.+.|.+++|+|++ ++||+|+.++. + -..+|+++ .+++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~--------~------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYM--------D------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEeccc--------C------------------Cccchhhh--hhccCCCCc
Confidence 57899999999987 79999986642 0 01368888 789999999
Q ss_pred cEEEEeCCCCcee----EEeccCCccEEEEeeeee----CCceEEEEEecCCeEEEEECCCCCc-----------eEEec
Q 001386 466 TIKVWDAVTGSRT----YSFEGHGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLGA-----------RVDYD 526 (1088)
Q Consensus 466 ~i~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~ 526 (1088)
+|+|||+.++++. ..+.+|.+.|.+++|+|. +++.+|++++.||+|++||+..... ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 9999999887753 456778899999999876 3467999999999999999986542 23566
Q ss_pred CCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCc-eeEEEeccccccccEEEE--EEeCCC-CEEEEEeCCCcE
Q 001386 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVV--HFDTAK-DQILAAGDDHVI 602 (1088)
Q Consensus 527 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~s~dg~i 602 (1088)
.|...|.+++|++++ .|++++. ++.|++||+.++. ....+.+|. ..|.++ +|+|++ .+|++++.|++|
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~---~~V~sv~~~~s~~g~~~laS~S~D~tv 335 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHD---SYILSVSTAYSDFEDTVVSTVAVDGYF 335 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSS---SCEEEEEEECCTTSCCEEEEEETTSEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeeccc---ccEEEEEEEcCCCCCeEEEEeccCCeE
Confidence 788899999999865 7888875 5679999999764 456678887 899999 578887 899999999999
Q ss_pred EEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceecc
Q 001386 603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG 682 (1088)
Q Consensus 603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~ 682 (1088)
++||+++++.+..+..+.....|.+++|+|+++.+++++.|++|++||+.++..+..+.+
T Consensus 336 klWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g-------------------- 395 (524)
T 2j04_B 336 YIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS-------------------- 395 (524)
T ss_dssp EEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE--------------------
T ss_pred EEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec--------------------
Confidence 999999988777666543322478999999999999999999999999987654333322
Q ss_pred ccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEE
Q 001386 683 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR 762 (1088)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~ 762 (1088)
|...|.+++|+|+|+.|++++.||.|++|+
T Consensus 396 --------------------------------------------------H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 396 --------------------------------------------------RETTITAIGVSRLHPMVLAGSADGSLIITN 425 (524)
T ss_dssp --------------------------------------------------CSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred --------------------------------------------------CCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence 566778888888888888888888888887
Q ss_pred ccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcC-CceeEEEecCCCCC
Q 001386 763 WPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVM-TFKTILTIMPPSPT 841 (1088)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~-~~~~~~~~~~~~~~ 841 (1088)
+..... ....+. ....+...+.+++|+|+++.+.. .+.+.+|+.. ++..+..+.+|...
T Consensus 426 ~~~~~~-----------~~~~~~-------~~~~~~~~v~~v~~sp~g~~~~~--~~~~~~~~~~~~g~~~~~l~gh~~~ 485 (524)
T 2j04_B 426 AARRLL-----------HGIKNS-------SATQKSLRLWKWDYSIKDDKYRI--DSSYEVYPLTVNDVSKAKIDAHGIN 485 (524)
T ss_dssp SCSSTT-----------TCC-------------CCCCEEEECBCCSSSCEEEE--CCCCCCCC-------------CCCS
T ss_pred chHhhc-----------cccccC-------ccceeeeEEEEeccCCCCCeEEc--cCCceecccccCCcceeeecCCCce
Confidence 543211 100000 00002234678999999986533 2233344332 46778889999999
Q ss_pred eEEEEEcCCCC---cEEEEEeCCCeEEEEEcCC
Q 001386 842 ATSLAFNPHDN---NVIAIGMDDSTILIYNARS 871 (1088)
Q Consensus 842 i~~l~~sp~d~---~~lasg~~dg~i~lwd~~~ 871 (1088)
|.+++|+| ++ .++|+|+.||.|+||++.-
T Consensus 486 V~~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 486 ITCTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCCEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred EEEEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence 99999999 64 5999999999999999873
No 64
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.1e-34 Score=321.48 Aligned_cols=300 Identities=12% Similarity=0.205 Sum_probs=248.8
Q ss_pred chhheeecccCCCCceeeeecCCCCeEEEEEcc---cCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCe
Q 001386 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1088)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~---dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V 399 (1088)
|....+.+.+|.+.|.+++|+|++..++++|+. |+.|+|||+.+++..... ..+|...|
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~------------------~~~~~~~v 68 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR------------------EIEKAKPI 68 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE------------------EEEESSCE
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee------------------eecccCcE
Confidence 344556678999999999999999878889987 999999999998765431 22589999
Q ss_pred EEEEECCC---CCEEEEEeCCCEEEEEEccCCC-cccceeEeccCCCCEEEEE------ecCCCCcEEEEEEeCCCcEEE
Q 001386 400 NRVVWSPD---GSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLA------FSAPCKQISVITCGDDKTIKV 469 (1088)
Q Consensus 400 ~~l~~s~d---g~~las~~~dg~i~vwd~~~~~-~~~~~~~~~~h~~~v~~~~------~s~d~~~l~l~s~s~d~~i~v 469 (1088)
.+++|+|+ |++|++|+.||.|++||+.+++ .+. .+.+|...|.+++ |+|+++ .+++++.|+.|++
T Consensus 69 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~v 143 (357)
T 3i2n_A 69 KCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKV 143 (357)
T ss_dssp EEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEE
T ss_pred EEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEE
Confidence 99999998 7999999999999999999887 333 6889999999995 578898 8999999999999
Q ss_pred EeCCCCc-eeEEeccCCc----cEEEEeeee--eCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEcc---
Q 001386 470 WDAVTGS-RTYSFEGHGA----PVYSLCPHA--KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--- 539 (1088)
Q Consensus 470 wd~~~~~-~~~~~~~~~~----~v~~~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~--- 539 (1088)
||+.+++ .+..+..|.+ .+.++++.+ ++++.++++++.||.|++||+++.+... ...+...+.+++|+|
T Consensus 144 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~ 222 (357)
T 3i2n_A 144 WDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDI 222 (357)
T ss_dssp ECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSS
T ss_pred EeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCC
Confidence 9999987 7788876655 788888422 4577899999999999999999877644 355677999999999
Q ss_pred CCCEEEEEeeCCCCceeEEEEeCCCCceeEEEe-----ccccccccEEEEEEeCCCC-EEEEEeCCCcEEEEEcCCC---
Q 001386 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-----GLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKV--- 610 (1088)
Q Consensus 540 ~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~--- 610 (1088)
++.++++++. ++.|++||+.+++....+. +|. ..|.+++|+|+++ ++++++.||.|++||+.++
T Consensus 223 ~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 223 SMNKLVATSL----EGKFHVFDMRTQHPTKGFASVSEKAHK---STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp SCCEEEEEES----TTEEEEEEEEEEETTTEEEEEEEECCS---SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred CCCEEEEECC----CCeEEEEeCcCCCcccceeeeccCCCc---CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence 9999999875 5569999998877655554 666 8999999999998 8999999999999999754
Q ss_pred ----------------eeeEEEeCCCCCCCCceEEEecCCCEEE-EEeCCCcEEEEeCCCCC
Q 001386 611 ----------------QLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESN 655 (1088)
Q Consensus 611 ----------------~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iwd~~~~~ 655 (1088)
+.+..+..+ ...|.+++|+|++++|+ +++.||.|++|++.+..
T Consensus 296 ~~~~~~g~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 296 SKKDSEGIEMGVAGSVSLLQNVTLS--TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp --CCTTSCCCCCCCEEEEEEEEECC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred ccccCCCCccccccccceeeccccC--CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 345566655 34699999999999998 79999999999998653
No 65
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=7e-33 Score=322.56 Aligned_cols=342 Identities=15% Similarity=0.196 Sum_probs=270.3
Q ss_pred EEecCCCCce-EEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCc
Q 001386 523 VDYDAPGLGC-TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 601 (1088)
Q Consensus 523 ~~~~~~~~~v-~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~ 601 (1088)
..+..|...+ .++.+ +++++++++. ++.|++||..+++.+..+.+|. ..|.+++|++++ .+++|+.||+
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~----dg~i~vwd~~~~~~~~~~~~h~---~~V~~l~~~~~~-~l~s~s~dg~ 184 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDNYVITGAD----DKMIRVYDSINKKFLLQLSGHD---GGVWALKYAHGG-ILVSGSTDRT 184 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEECSTT-EEEEEETTSC
T ss_pred EEEcCCCCCcEEEEEE--CCCEEEEEcC----CCcEEEEECCCCcEEEEEeCCC---cCEEEEEEcCCC-EEEEEeCCCC
Confidence 3555666654 44444 6789999886 4559999999999999999888 999999999987 9999999999
Q ss_pred EEEEEcCCCeeeEEEeCCCCCCCCceEEEe--cCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcce
Q 001386 602 IKIWDMNKVQLLTTIDAGGGLPENPRICFN--KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 679 (1088)
Q Consensus 602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 679 (1088)
|++||+.+++.+..+..|.. .|.+++|+ +++.++++++.||.|++||+.++...........
T Consensus 185 i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~-------------- 248 (464)
T 3v7d_B 185 VRVWDIKKGCCTHVFEGHNS--TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-------------- 248 (464)
T ss_dssp EEEEETTTTEEEEEECCCSS--CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC--------------
T ss_pred EEEEECCCCcEEEEECCCCC--ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC--------------
Confidence 99999999999999886644 68999998 5789999999999999999987643322110000
Q ss_pred eccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceE
Q 001386 680 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 759 (1088)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~ 759 (1088)
...+.+.+++...+.
T Consensus 249 ---------------------------------------------------------~~~~~~~~~~~~~~~-------- 263 (464)
T 3v7d_B 249 ---------------------------------------------------------YPLVFHTPEENPYFV-------- 263 (464)
T ss_dssp ---------------------------------------------------------SSEEESCGGGCTTEE--------
T ss_pred ---------------------------------------------------------cceEeeccCCCeEEE--------
Confidence 000011111110000
Q ss_pred EEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCC
Q 001386 760 MWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPP 838 (1088)
Q Consensus 760 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~ 838 (1088)
..+ .+|...+.++ ++++.++++++ |+.|++||+.+++.+..+.+|
T Consensus 264 ------------------------------~~~--~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~ 309 (464)
T 3v7d_B 264 ------------------------------GVL--RGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH 309 (464)
T ss_dssp ------------------------------EEE--CCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred ------------------------------EEc--cCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence 001 1266666665 67899999998 899999999999999999999
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceee
Q 001386 839 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT 918 (1088)
Q Consensus 839 ~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~ 918 (1088)
...|.+++|+| +++++++|+.||.|++||+.+++++..+.+|...|.+++|+ +++|++++.||+|++||+.++....
T Consensus 310 ~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~ 386 (464)
T 3v7d_B 310 TDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF 386 (464)
T ss_dssp SSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceee
Confidence 99999999999 89999999999999999999999999999999999999997 5799999999999999999865322
Q ss_pred eeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcE
Q 001386 919 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL 998 (1088)
Q Consensus 919 ~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v 998 (1088)
. .... ..+..++|++++++++++.|+.|++||+.+++.+.....+|...|.+++|+ ++.++++++.||.+
T Consensus 387 ~----~~~~-----~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~ 456 (464)
T 3v7d_B 387 S----YHHT-----NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQS 456 (464)
T ss_dssp E----EECT-----TCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEE
T ss_pred e----ecCC-----CCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeE
Confidence 1 1111 246789999999999998899999999999999988778899999999997 44455566667766
Q ss_pred EEEE
Q 001386 999 SIHE 1002 (1088)
Q Consensus 999 ~vwd 1002 (1088)
.+|-
T Consensus 457 ~i~~ 460 (464)
T 3v7d_B 457 FLEI 460 (464)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5553
No 66
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-34 Score=328.50 Aligned_cols=274 Identities=12% Similarity=0.181 Sum_probs=212.8
Q ss_pred Cchhheeec-ccCCCCceeeeecC-CCCeEEEEEcccCcEEEEecCC---CcceeeeceeeeeeccccccceeeeecCCC
Q 001386 322 FPKTVAQTL-IEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNS---GQKLFIRNFKVWDIGACSMLFKTALVRDPG 396 (1088)
Q Consensus 322 ~p~~~~~~l-~~h~~~V~~v~~sp-dg~~lla~g~~dg~i~iwd~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~ 396 (1088)
.....+.++ .+|.+.|++++|+| +|+ +||+|+.||+|+|||+.+ +..... ....+|.
T Consensus 50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~-----------------~~~~~h~ 111 (437)
T 3gre_A 50 LRGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSS-----------------SLTYDCS 111 (437)
T ss_dssp CCCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSC-----------------SEEEECS
T ss_pred ccceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccce-----------------eeeccCC
Confidence 345677778 89999999999999 998 799999999999999987 432110 0012499
Q ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEcc---CCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCC
Q 001386 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYH---GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473 (1088)
Q Consensus 397 ~~V~~l~~s~dg~~las~~~dg~i~vwd~~---~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~ 473 (1088)
..|.+++|+|++++|++|+.||.|++||+. +++... .+.+| .+..+.|+|++
T Consensus 112 ~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~--~i~~~~~~~~~-------------------- 166 (437)
T 3gre_A 112 STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVK---FLNCE--CIRKINLKNFG-------------------- 166 (437)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEE---EEEEE--EEEEEEGGGGS--------------------
T ss_pred CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceee---ccccc--eeEEEEccCcc--------------------
Confidence 999999999999999999999999999995 554333 34444 67777777643
Q ss_pred CCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecC--CCCceEEEEEccCCCEEEEEeeCC
Q 001386 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PGLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
+...+.++.+...+++.++++++.||.|++||+++.+....+.. |...|.+++|+|++++|++++.
T Consensus 167 ----------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-- 234 (437)
T 3gre_A 167 ----------KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT-- 234 (437)
T ss_dssp ----------SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET--
T ss_pred ----------cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC--
Confidence 23344455554567888999999999999999999998888877 6789999999999999999986
Q ss_pred CCceeEEEEeCCCCceeEEEe-ccccccccEEEEEEe----CCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCC-----
Q 001386 552 EGESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFD----TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----- 621 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~----~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~----- 621 (1088)
++.|++||+++++.+..+. .+. ..|.+++|+ +++.++++++.||.|++||+.+++.+..+..+..
T Consensus 235 --dg~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 309 (437)
T 3gre_A 235 --RGIIDIWDIRFNVLIRSWSFGDH---APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSME 309 (437)
T ss_dssp --TSCEEEEETTTTEEEEEEBCTTC---EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGG
T ss_pred --CCeEEEEEcCCccEEEEEecCCC---CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccc
Confidence 4569999999999988886 555 689999665 4677999999999999999999999988886532
Q ss_pred -------------------CCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCc
Q 001386 622 -------------------LPENPRICFNKNGTLLAVIANENRIKILETPESNS 656 (1088)
Q Consensus 622 -------------------~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 656 (1088)
...|.+++|+ ++++|++++.|+.|++||+.+++.
T Consensus 310 ~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~ 362 (437)
T 3gre_A 310 HFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSS 362 (437)
T ss_dssp GGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGG
T ss_pred eecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCccc
Confidence 1225555665 455666666666666666655433
No 67
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.1e-34 Score=322.77 Aligned_cols=295 Identities=16% Similarity=0.213 Sum_probs=247.4
Q ss_pred eecccCCCCceeeeecCC---CCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 328 QTLIEGSSSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spd---g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
..+.+|.+.|++++|+|+ +..++++++.++.|+|||+.+++.+.... ......|...|.+++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~ 77 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ--------------SYVDADADENFYTCAW 77 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEE--------------EEECSCTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeee--------------eccccCCCCcEEEEEe
Confidence 445699999999999984 44456666667899999999887664321 1113347899999999
Q ss_pred CCC----CCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecC-CCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001386 405 SPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1088)
Q Consensus 405 s~d----g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~s~d~~i~vwd~~~~~~~~ 479 (1088)
+|+ |++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| +++ ++++++.||.|++||+.+++.+.
T Consensus 78 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~ 152 (366)
T 3k26_A 78 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVA 152 (366)
T ss_dssp EECTTTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEE
Confidence 999 6799999999999999999987655 6779999999999999 777 89999999999999999999998
Q ss_pred Ee---ccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEec----------------------------CC
Q 001386 480 SF---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD----------------------------AP 528 (1088)
Q Consensus 480 ~~---~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------------------------~~ 528 (1088)
.+ .+|...|.+++|++ ++.+|++++.||.|++||+++.+....+. .+
T Consensus 153 ~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (366)
T 3k26_A 153 IFGGVEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIH 230 (366)
T ss_dssp EECSTTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSC
T ss_pred EecccccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCC
Confidence 88 78999999999955 67899999999999999998765433222 37
Q ss_pred CCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCce--------------eEEEeccccccccEEEEEEeCC--CCE
Q 001386 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--------------KRTYQGLQLQHNSVSVVHFDTA--KDQ 592 (1088)
Q Consensus 529 ~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~--------------~~~~~~~~~~~~~v~~~~~~~~--~~~ 592 (1088)
...|.+++|+ ++++++++. ++.|++||+.++.. +..+.+|. ..|.+++|+|+ +++
T Consensus 231 ~~~v~~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~~ 301 (366)
T 3k26_A 231 RNYVDCVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ---CDIWYMRFSMDFWQKM 301 (366)
T ss_dssp SSCCCEEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS---CCSSCCCCEECTTSSE
T ss_pred cceEEEEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccC---CcEEEEEEcCCCCCcE
Confidence 7889999998 778888865 56799999988754 66777776 78999999999 999
Q ss_pred EEEEeCCCcEEEEEcCCCee----eEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCC
Q 001386 593 ILAAGDDHVIKIWDMNKVQL----LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
+++++.||.|++||+.+++. ...+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 302 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 302 LALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 99999999999999998764 3466666445679999999999999999999999999975
No 68
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.5e-34 Score=329.38 Aligned_cols=304 Identities=17% Similarity=0.191 Sum_probs=239.2
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
...+...+|...|+||+|||.+..+||+|+.||+|+|||+.+++...... +.+|.+.|++++|
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~-----------------~~gH~~~V~~l~f 172 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK-----------------GIGAGGSITGLKF 172 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC-----------------CCSSSCCCCEEEE
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE-----------------ccCCCCCEEEEEE
Confidence 34456678999999999999654489999999999999999886543211 5689999999999
Q ss_pred CC-CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEecc
Q 001386 405 SP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1088)
Q Consensus 405 s~-dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~ 483 (1088)
+| |+.+|++|+.||+|++||++++.. ........+...+.+++|+|+++ +|++|+.||.|++||+. ++.+..+.+
T Consensus 173 ~p~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~ 248 (435)
T 4e54_B 173 NPLNTNQFYASSMEGTTRLQDFKGNIL-RVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRM 248 (435)
T ss_dssp CSSCTTEEEEECSSSCEEEEETTSCEE-EEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBC
T ss_pred eCCCCCEEEEEeCCCEEEEeeccCCce-eEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEec
Confidence 98 789999999999999999987532 22222233445688999999999 89999999999999975 567788899
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceE---EecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEE
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 560 (1088)
|...|.+++|++.. ..++++++.|+.|++||++...... ....|...|.+++|+|+|++|++++. ++.|++|
T Consensus 249 h~~~v~~v~~~p~~-~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iw 323 (435)
T 4e54_B 249 HKKKVTHVALNPCC-DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVY 323 (435)
T ss_dssp CSSCEEEEEECTTC-SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEE
T ss_pred ccceEEeeeecCCC-ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEE
Confidence 99999999997643 2488999999999999998766443 33567789999999999999999986 4559999
Q ss_pred eCCCCceeEEEecccccc---ccEEEEEEeCCCCEEEEEe------------CCCcEEEEEcCCCeeeEEEeCCCCCCCC
Q 001386 561 NESEGAIKRTYQGLQLQH---NSVSVVHFDTAKDQILAAG------------DDHVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1088)
Q Consensus 561 d~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~s------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1088)
|+.++.....+..|.... ..+..+.|+|++..+++++ .++.|++||..+++.+..+..+. ...|
T Consensus 324 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v 402 (435)
T 4e54_B 324 SASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGI 402 (435)
T ss_dssp ESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCC
T ss_pred ECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcE
Confidence 999998888877664111 1233456777777776654 34679999999999988875432 2357
Q ss_pred ceE-EEecCCCEEEEEeCCCcEEEEeCCCCCc
Q 001386 626 PRI-CFNKNGTLLAVIANENRIKILETPESNS 656 (1088)
Q Consensus 626 ~~v-~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 656 (1088)
.++ +|+|+|++|++|+ |+.|+||++.+++.
T Consensus 403 ~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 403 SSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp CCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred EEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 776 6999999999876 78999999998754
No 69
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.9e-33 Score=313.75 Aligned_cols=291 Identities=12% Similarity=0.066 Sum_probs=246.8
Q ss_pred cccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCc--ceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 330 l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
+..|.++|++++|+|||+ +|++|+.|+.|+|||+.+++ .+.. +.+|...|.+++|+|+
T Consensus 4 ~~~~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~ 63 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHE-------------------LKEHNGQVTGVDWAPD 63 (372)
T ss_dssp EESCSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEE-------------------EECCSSCEEEEEEETT
T ss_pred ecccCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeeee-------------------ecCCCCcccEEEEeCC
Confidence 456888999999999999 78999999999999999886 4433 6679999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce---e-EEecc
Q 001386 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---T-YSFEG 483 (1088)
Q Consensus 408 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~---~-~~~~~ 483 (1088)
+++|++++.||.|++||+.+++... ...+..|...|.+++|+|+++ ++++++.|+.|++||+.++.. . ....+
T Consensus 64 ~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 140 (372)
T 1k8k_C 64 SNRIVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKP 140 (372)
T ss_dssp TTEEEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTT
T ss_pred CCEEEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecc
Confidence 9999999999999999998876433 224568999999999999999 899999999999999998873 3 33367
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECC------------------CCCceEEecCCCCceEEEEEccCCCEEE
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD------------------SLGARVDYDAPGLGCTRMAYSANGRRLF 545 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~------------------~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 545 (1088)
|...|.+++|++ ++.++++++.||.|++||++ .......+..+...+.+++|+|++++|+
T Consensus 141 ~~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 218 (372)
T 1k8k_C 141 IRSTVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA 218 (372)
T ss_dssp CCSCEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred cCCCeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence 899999999955 67899999999999999954 5566777778888999999999999999
Q ss_pred EEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCC--Ceee----------
Q 001386 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQLL---------- 613 (1088)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~~~~---------- 613 (1088)
+++. ++.|++||+.+++.+..+..|. ..+.+++|+|++.+++++ .|+.|++|++.+ ++..
T Consensus 219 ~~~~----d~~i~i~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 290 (372)
T 1k8k_C 219 WVSH----DSTVCLADADKKMAVATLASET---LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQ 290 (372)
T ss_dssp EEET----TTEEEEEEGGGTTEEEEEECSS---CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--
T ss_pred EEeC----CCEEEEEECCCCceeEEEccCC---CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCcccc
Confidence 9975 5569999999999999999887 899999999999887777 899999999987 4310
Q ss_pred ----------------------------EEEeCCCCCCCCceEEEe-cCC---CEEEEEeCCCcEEEEeCCCC
Q 001386 614 ----------------------------TTIDAGGGLPENPRICFN-KNG---TLLAVIANENRIKILETPES 654 (1088)
Q Consensus 614 ----------------------------~~~~~~~~~~~v~~v~~s-~~~---~~l~~~~~dg~i~iwd~~~~ 654 (1088)
..+. .++...|.+++|. ++| .+|++++.||.|++|++.++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 291 SSQRGLTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp ------CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred chhhhcchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 1111 1344578999866 566 99999999999999998764
No 70
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.3e-33 Score=315.22 Aligned_cols=203 Identities=13% Similarity=0.127 Sum_probs=172.7
Q ss_pred CCCCeeEEEEecCCCEEEEEe---CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce
Q 001386 797 SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 873 (1088)
Q Consensus 797 ~~~~v~~~~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~ 873 (1088)
+...+.+++|||||+++++++ |++|+|||+.+++.+..+. |...|.+++|+| |++++++++.+ .+++|+..+++
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCC
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCc
Confidence 556789999999999988664 6899999999999999886 778899999999 89999999855 56777777776
Q ss_pred eee--eeccccCCeeEEEECCCCCEEEEEeCCC----cEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEE
Q 001386 874 VIS--KLEGHSKRVTGLVFSDALNILVSSGGDA----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 947 (1088)
Q Consensus 874 ~~~--~l~~h~~~V~~l~~s~dg~~las~s~Dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l 947 (1088)
.+. ...+|...|.+++|+||++++++++.|+ .+++|++......... .....++.. .|++++|||||++|
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~---~V~~~~~Spdg~~l 284 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLR-SKQVTNRFK---GITSMDVDMKGELA 284 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEE-EEEEESSCS---CEEEEEECTTSCEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceeccee-eeeecCCCC---CeEeEEECCCCCce
Confidence 543 4467999999999999999999999887 6889998876533222 223334443 79999999999999
Q ss_pred EE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC
Q 001386 948 LL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1006 (1088)
Q Consensus 948 ~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~ 1006 (1088)
|+ +.|++|+|||+.+++++..+..+|...|++++|||||++||+||.|++|+||+++..
T Consensus 285 asgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 285 VLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99 578999999999999999988899999999999999999999999999999999755
No 71
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.8e-33 Score=320.15 Aligned_cols=348 Identities=11% Similarity=0.123 Sum_probs=243.1
Q ss_pred eEEEEeCCCCceeEEEeccccccccEEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeEEEeC-----------CCCCC
Q 001386 556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGLP 623 (1088)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----------~~~~~ 623 (1088)
.+++|+...++....+.+|. ..|.+++|+| +++++++++.||.|++||+.+++....+.. ..+..
T Consensus 24 ~~~v~~~~~~~~~~~~~~h~---~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 24 TRRVLGLELNKDRDVERIHG---GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHTEEECTTEEECCCCS---SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred cceeeccccCcceeeeeccC---CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence 36778888888888888887 9999999999 999999999999999999998766554431 12345
Q ss_pred CCceEEEec-CCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCccc
Q 001386 624 ENPRICFNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 702 (1088)
Q Consensus 624 ~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 702 (1088)
.|.+++|+| ++.++++++.||.|++||+.+++....+.
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----------------------------------------- 139 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN----------------------------------------- 139 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-----------------------------------------
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-----------------------------------------
Confidence 689999999 77899999999999999987543221110
Q ss_pred ccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCC
Q 001386 703 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPR 782 (1088)
Q Consensus 703 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 782 (1088)
T Consensus 140 -------------------------------------------------------------------------------- 139 (408)
T 4a11_B 140 -------------------------------------------------------------------------------- 139 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcceeeccCCCCCCCCeeEEEEec---CCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCc-EEEE
Q 001386 783 HGPQFMVNDTTDSNSQEAVPCFALSK---NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAI 857 (1088)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~v~~~~~s~---dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~-~las 857 (1088)
+...+.++++++ ++.++++++ ++.|++||+.+++.+..+..|...|++++|+| +++ ++++
T Consensus 140 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ll~~ 204 (408)
T 4a11_B 140 --------------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYDYILAT 204 (408)
T ss_dssp --------------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCTTEEEE
T ss_pred --------------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCCcEEEE
Confidence 222344455554 445788776 88999999999999999999999999999999 566 6999
Q ss_pred EeCCCeEEEEEcCCce-eeeee---------------ccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 001386 858 GMDDSTILIYNARSSE-VISKL---------------EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS 921 (1088)
Q Consensus 858 g~~dg~i~lwd~~~~~-~~~~l---------------~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~ 921 (1088)
|+.||.|++||+.++. .+..+ .+|.+.|.+++|+|++++|++++.||.|++||+.+++......
T Consensus 205 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 284 (408)
T 4a11_B 205 ASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNY 284 (408)
T ss_dssp EETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCC
T ss_pred EcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecc
Confidence 9999999999998765 33333 5799999999999999999999999999999999865322111
Q ss_pred eecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEE
Q 001386 922 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIH 1001 (1088)
Q Consensus 922 ~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vw 1001 (1088)
......... ...........+.+++++.++.|++||+.+++++.. +.+|...|.+++|+||+++|++++.||.|++|
T Consensus 285 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 361 (408)
T 4a11_B 285 GKVCNNSKK--GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITM-LKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361 (408)
T ss_dssp CCCCCCCSS--CCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEE-ECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred ccccccccc--cceeEEecCCCceEEEEecCCEEEEEECcCCcceee-eccCCCeEEEEEEcCCCCEEEEECCCCeEEEE
Confidence 111111111 122334445556666668999999999999999887 45899999999999999999999999999999
Q ss_pred EcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001386 1002 EASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1058 (1088)
Q Consensus 1002 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~ 1058 (1088)
|+.+++.+....... ....+.|.+...+...+.|+.+.+|+.+.
T Consensus 362 ~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 362 VPSLYEPVPDDDETT-------------TKSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp EECC-----------------------------------------------------
T ss_pred eCCCCCccCCCCceE-------------eccccccccceeecccCccCceeecCCcc
Confidence 999998775543111 11223333456677888999999998753
No 72
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.5e-33 Score=324.24 Aligned_cols=303 Identities=13% Similarity=0.120 Sum_probs=232.1
Q ss_pred eEEEeccccccccEEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec-CCCEEEEEeCCCc
Q 001386 568 KRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENR 645 (1088)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~ 645 (1088)
.....+|. ..|++++|+| +++.|++|+.||.|+|||+.+++....+...++...|.+++|+| ++.+|++++.||+
T Consensus 112 ~~~~~~~~---~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~ 188 (435)
T 4e54_B 112 LQKAAPFD---RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT 188 (435)
T ss_dssp CCEEEECS---SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred cccCCCCC---CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence 34445555 7899999999 46789999999999999999887766666555566899999998 7899999999999
Q ss_pred EEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCccee
Q 001386 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 725 (1088)
Q Consensus 646 i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~ 725 (1088)
|++||+.++....
T Consensus 189 v~iwd~~~~~~~~------------------------------------------------------------------- 201 (435)
T 4e54_B 189 TRLQDFKGNILRV------------------------------------------------------------------- 201 (435)
T ss_dssp EEEEETTSCEEEE-------------------------------------------------------------------
T ss_pred EEEeeccCCceeE-------------------------------------------------------------------
Confidence 9999986321000
Q ss_pred eecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEE
Q 001386 726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 805 (1088)
Q Consensus 726 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 805 (1088)
+... ..+...+.+++
T Consensus 202 ------------------------~~~~-----------------------------------------~~~~~~~~~~~ 216 (435)
T 4e54_B 202 ------------------------FASS-----------------------------------------DTINIWFCSLD 216 (435)
T ss_dssp ------------------------EECC-----------------------------------------SSCSCCCCCEE
T ss_pred ------------------------Eecc-----------------------------------------CCCCccEEEEE
Confidence 0000 01334567789
Q ss_pred EecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee---eeccc
Q 001386 806 LSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS---KLEGH 881 (1088)
Q Consensus 806 ~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~---~l~~h 881 (1088)
|+|++++|++|+ +|.|++||+. ++.+..+.+|...|++++|+|++..++++|+.|+.|+|||+.+++... ...+|
T Consensus 217 ~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h 295 (435)
T 4e54_B 217 VSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPH 295 (435)
T ss_dssp EETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBC
T ss_pred ECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeec
Confidence 999999999998 8999999986 566778889999999999999555689999999999999998876443 34679
Q ss_pred cCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-----------
Q 001386 882 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----------- 950 (1088)
Q Consensus 882 ~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~----------- 950 (1088)
...|++++|+|||++|++++.||+|+|||+.+++............ .....+..+.|+|++..++++
T Consensus 296 ~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 373 (435)
T 4e54_B 296 RHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRH--FQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCT 373 (435)
T ss_dssp SSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCC--CSSSCCCBCEECSSSSCEEEECCCCTTSCCSS
T ss_pred cccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccc--cccceeEEEEEcCCCCEEEEEEcCCCCeEEEE
Confidence 9999999999999999999999999999999876433221111100 000123345666666666553
Q ss_pred --eCCeEEEEEcCcceeeeeeecCCCcCEEEE-EEeeCCCEEEEEeCCCcEEEEEcCCCceE
Q 001386 951 --HETHLAIYEAEELTCLKQWFPISSVPISQA-TFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1009 (1088)
Q Consensus 951 --~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l-~fs~dg~~l~s~s~dg~v~vwd~~~~~~~ 1009 (1088)
.++.|++||..+++++..+..+|...|.++ +|+|||++|++|+ |++|+||++.+|+..
T Consensus 374 ~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 374 PYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp TTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred ecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 235799999999999999888899999887 6999999999875 889999999998753
No 73
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.6e-33 Score=315.07 Aligned_cols=307 Identities=16% Similarity=0.167 Sum_probs=244.3
Q ss_pred EEeCCCCceeEEEeccccccccEEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec-CCCE
Q 001386 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTL 636 (1088)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~ 636 (1088)
+|+.........+.+|. ..|.+++|+|++ +++++++.||.|++||+.+++....+...++...|.+++|+| ++++
T Consensus 57 ~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 133 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFD---RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQ 133 (383)
T ss_dssp HHHHTTCEEEEEECCCS---SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEE
T ss_pred cccccccceEEeccCCC---CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCE
Confidence 34455666777888887 899999999999 999999999999999999998888887545556799999999 7899
Q ss_pred EEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceecccc
Q 001386 637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1088)
Q Consensus 637 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 716 (1088)
|++++.|+.|++||+.+. ....+.
T Consensus 134 l~s~~~d~~i~iwd~~~~-~~~~~~------------------------------------------------------- 157 (383)
T 3ei3_B 134 LFVSSIRGATTLRDFSGS-VIQVFA------------------------------------------------------- 157 (383)
T ss_dssp EEEEETTTEEEEEETTSC-EEEEEE-------------------------------------------------------
T ss_pred EEEEeCCCEEEEEECCCC-ceEEEe-------------------------------------------------------
Confidence 999999999999998731 100000
Q ss_pred ccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCC
Q 001386 717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSN 796 (1088)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1088)
. ...
T Consensus 158 -----------------------------------~-----------------------------------------~~~ 161 (383)
T 3ei3_B 158 -----------------------------------K-----------------------------------------TDS 161 (383)
T ss_dssp -----------------------------------C-----------------------------------------CCC
T ss_pred -----------------------------------c-----------------------------------------cCC
Confidence 0 001
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCc-EEEEEeCCCeEEEEEcCC---
Q 001386 797 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDDSTILIYNARS--- 871 (1088)
Q Consensus 797 ~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~-~lasg~~dg~i~lwd~~~--- 871 (1088)
+...|.+++|+|+++++++++ |+.|++||+ +++.+..+..|...|.+++|+| +++ +|++|+.||.|++||+.+
T Consensus 162 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~ 239 (383)
T 3ei3_B 162 WDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKD 239 (383)
T ss_dssp SSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCS
T ss_pred CCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCc
Confidence 456788899999999999988 889999998 5778888999999999999999 677 999999999999999998
Q ss_pred -ceeeeeeccccCCeeEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeec--CCCCcc-------CCCCeEEEEE
Q 001386 872 -SEVISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT--PDGVMT-------LAPSETHIQF 940 (1088)
Q Consensus 872 -~~~~~~l~~h~~~V~~l~~s~-dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~--~~~~~~-------~~~~v~~~~f 940 (1088)
+.++..+ +|.+.|.+++|+| ++++|++++.|+.|++||+.+++......... ...+.. ....+..++|
T Consensus 240 ~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 318 (383)
T 3ei3_B 240 KNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGR 318 (383)
T ss_dssp TTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEEC
T ss_pred ccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEe
Confidence 6666666 6999999999999 99999999999999999999866432211110 001110 0123445666
Q ss_pred cCCCCEEEEEeCCeEEEEEcCcceeeeeeecC-CCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCC
Q 001386 941 HKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1005 (1088)
Q Consensus 941 s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~ 1005 (1088)
+|||++ ..+.|+.|++||+.+++++..+... |...+..++|+|||++|++|+ ||.|++||+.+
T Consensus 319 s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 319 YPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp BCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred cCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 677766 3357899999999999998886533 467788889999999999997 99999999875
No 74
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.4e-33 Score=314.92 Aligned_cols=298 Identities=11% Similarity=0.126 Sum_probs=232.1
Q ss_pred CceeeeecCCCCeEEEEEccc-------CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCC
Q 001386 336 SPMSMDFHPVQHTLLLVGTNV-------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~d-------g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg 408 (1088)
+|++++|+|||+ +||+|+.+ +.|+||++..+.......+ .......+.+|...|.+++++ +
T Consensus 16 PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~---------~~~~~~~l~~~~~~v~s~~~~--~ 83 (365)
T 4h5i_A 16 PAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQF---------HILSEFALEDNDDSPTAIDAS--K 83 (365)
T ss_dssp CEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHE---------EEEEEEECCTTSCCCCEEEEE--T
T ss_pred CEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeee---------eeeeEEEccCCCCceEEEEeC--C
Confidence 899999999998 78888643 3599999987654322111 111222377899999888775 5
Q ss_pred CEEEEE-----------eCCCEEEEEEccCCCcccc-ee-----EeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 409 SLLGVA-----------YSKHIVQLYAYHGGSDARQ-QL-----EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 409 ~~las~-----------~~dg~i~vwd~~~~~~~~~-~~-----~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
+.+++| +.|+.+++|++.++..... .. ....+...+.+++|||||+.+.+++++.|++|+|||
T Consensus 84 ~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd 163 (365)
T 4h5i_A 84 GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIID 163 (365)
T ss_dssp TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEE
T ss_pred CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeE
Confidence 566665 3577899999987643211 11 122445668999999999965566777899999999
Q ss_pred CCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceE--EecCCCCceEEEEEccCCCEEEEEee
Q 001386 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGT 549 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~~~~~ 549 (1088)
+.+++++..+. |...|.+++| +++|.++++++.+ .+.+|+..++.... ....+...+.+++|+|+++++++++.
T Consensus 164 ~~~~~~~~~~~-~~~~V~~v~f--spdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~ 239 (365)
T 4h5i_A 164 PSDLTEKFEIE-TRGEVKDLHF--STDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASL 239 (365)
T ss_dssp TTTTEEEEEEE-CSSCCCEEEE--CTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCcEEEEeC-CCCceEEEEE--ccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEec
Confidence 99999998886 7788999999 4578899998855 56666666666544 33456678999999999999999998
Q ss_pred CCCCceeEEEEeCCCCce----eEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEE-eCCCCCCC
Q 001386 550 SKEGESFLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-DAGGGLPE 624 (1088)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~ 624 (1088)
++.....+++|+...+.. ...+.+|. ..|.+++|+|+|++|++|+.|++|+|||+.+++++..+ ..|. ..
T Consensus 240 d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~--~~ 314 (365)
T 4h5i_A 240 KKGKGIVLTKISIKSGNTSVLRSKQVTNRF---KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHS--FA 314 (365)
T ss_dssp SSSCCEEEEEEEEETTEEEEEEEEEEESSC---SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSS--SC
T ss_pred CCcceeEEeecccccceecceeeeeecCCC---CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCccc--CC
Confidence 776667889999877654 33455665 88999999999999999999999999999999999876 4454 46
Q ss_pred CceEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 001386 625 NPRICFNKNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 625 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
|++++|+|||++||+++.|++|+||+++.+
T Consensus 315 V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 315 ITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999999999999999754
No 75
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-32 Score=312.22 Aligned_cols=298 Identities=16% Similarity=0.230 Sum_probs=246.5
Q ss_pred ecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCC
Q 001386 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1088)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg 408 (1088)
...+|.+.+.+..+++++.. +++++.|+.|+|||+.+++..... ...|...|.+++|+|++
T Consensus 86 ~~~~~~~~~~~~~~~~s~~~-l~~~~~d~~v~lw~~~~~~~~~~~------------------~~~~~~~v~~v~~s~~~ 146 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWSNLN-VVAVALERNVYVWNADSGSVSALA------------------ETDESTYVASVKWSHDG 146 (401)
T ss_dssp ECTTCCCCTTCBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEE------------------ECCTTCCEEEEEECTTS
T ss_pred eCCCCcCCceEEEEeecCCC-EEEEECCCeEEEeeCCCCcEeEee------------------ecCCCCCEEEEEECCCC
Confidence 34478777665555544553 566778999999999999876531 22388999999999999
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCC-CCceeEEeccCCcc
Q 001386 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYSFEGHGAP 487 (1088)
Q Consensus 409 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~-~~~~~~~~~~~~~~ 487 (1088)
++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ ++ .+++++.|+.|++||+. .+..+..+.+|...
T Consensus 147 ~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 219 (401)
T 4aez_A 147 SFLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSE 219 (401)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSC
T ss_pred CEEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCC
Confidence 999999999999999999987655 677999999999994 45 79999999999999999 56778889999999
Q ss_pred EEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCce
Q 001386 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1088)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1088)
|.+++|++ ++.+|++++.||.|++||+++......+..+...|.+++|+|++..+++.+. +..++.|++||+.+++.
T Consensus 220 v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~~ 296 (401)
T 4aez_A 220 VCGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGAR 296 (401)
T ss_dssp EEEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCCE
T ss_pred eeEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCCE
Confidence 99999965 7789999999999999999999888888899999999999998866655432 12367799999999999
Q ss_pred eEEEeccccccccEEEEEEeCCCCEEEEEe--CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCc
Q 001386 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1088)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 645 (1088)
+..+..+ ..+.+++|+|+++++++++ .||.|++||+.+++.........+...|.+++|+|++++|++++.||.
T Consensus 297 ~~~~~~~----~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~ 372 (401)
T 4aez_A 297 VNTVDAG----SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDEN 372 (401)
T ss_dssp EEEEECS----SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSE
T ss_pred EEEEeCC----CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 8888643 5899999999999999954 899999999999776666443344557999999999999999999999
Q ss_pred EEEEeCCCCCcccc
Q 001386 646 IKILETPESNSVDA 659 (1088)
Q Consensus 646 i~iwd~~~~~~~~~ 659 (1088)
|++|++.+++.+..
T Consensus 373 i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 373 LKFWRVYDGDHVKR 386 (401)
T ss_dssp EEEEECCC------
T ss_pred EEEEECCCCccccc
Confidence 99999998876554
No 76
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.1e-34 Score=323.10 Aligned_cols=289 Identities=12% Similarity=0.055 Sum_probs=226.6
Q ss_pred cccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCC--cceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 330 l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
...|.+.|++++|+|||+ +||+|+.|+.|+|||+.++ +.+.. +.+|...|.+++|+|+
T Consensus 7 ~~~~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~ 66 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHART-------------------FSDHDKIVTCVDWAPK 66 (377)
T ss_dssp EEECSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECCC-------------------BCCCSSCEEEEEECTT
T ss_pred EecCCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEEE-------------------EecCCceEEEEEEeCC
Confidence 345667999999999999 7999999999999999987 44433 6789999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc---eeEEecc-
Q 001386 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTYSFEG- 483 (1088)
Q Consensus 408 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~---~~~~~~~- 483 (1088)
+++|++++.|++|++||+.+++.......+.+|...|.+++|+|+++ ++++++.|+.|++||+.+++ +...+.+
T Consensus 67 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (377)
T 3dwl_C 67 SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRP 144 (377)
T ss_dssp TCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSS
T ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecc
Confidence 99999999999999999999874444556789999999999999999 79999999999999999887 4778887
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCC------------------CCceEEecCCCCceEEEEEccCCCEEE
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS------------------LGARVDYDAPGLGCTRMAYSANGRRLF 545 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~s~~g~~l~ 545 (1088)
|...|.+++|++ ++.+|++++.||.|++||++. ......+ .|...|.+++|+|++++|+
T Consensus 145 h~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~ 221 (377)
T 3dwl_C 145 LRSTILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALA 221 (377)
T ss_dssp CCSCEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEE
T ss_pred cCCCeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEE
Confidence 999999999955 678999999999999999853 2233344 7788899999999999999
Q ss_pred EEeeCCCCceeEEEEeCCCCce----eEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe--ee------
Q 001386 546 SCGTSKEGESFLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ--LL------ 613 (1088)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~--~~------ 613 (1088)
+++. ++.|++||+.+++. +..+.+|. ..|.+++|+|+++++++++.++.+ +|+..... ..
T Consensus 222 ~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 293 (377)
T 3dwl_C 222 YAGH----DSSVTIAYPSAPEQPPRALITVKLSQ---LPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAG 293 (377)
T ss_dssp EEET----TTEEC-CEECSTTSCEEECCCEECSS---SCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSC
T ss_pred EEeC----CCcEEEEECCCCCCcceeeEeecCCC---CceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccc
Confidence 9975 55699999999987 77777777 899999999999999888776665 66654211 00
Q ss_pred ----------------------------EEEe---C-----------CCCCCCCceEEEecC-CC---EEEEEeCCCcEE
Q 001386 614 ----------------------------TTID---A-----------GGGLPENPRICFNKN-GT---LLAVIANENRIK 647 (1088)
Q Consensus 614 ----------------------------~~~~---~-----------~~~~~~v~~v~~s~~-~~---~l~~~~~dg~i~ 647 (1088)
..+. . ..+...|.++++.++ +. .+++++.||.|+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~ 373 (377)
T 3dwl_C 294 TSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVV 373 (377)
T ss_dssp CCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEE
T ss_pred ccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEE
Confidence 0000 0 013446888886654 33 699999999999
Q ss_pred EEeC
Q 001386 648 ILET 651 (1088)
Q Consensus 648 iwd~ 651 (1088)
+||+
T Consensus 374 iWdl 377 (377)
T 3dwl_C 374 LWTL 377 (377)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 77
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=5.7e-32 Score=309.55 Aligned_cols=289 Identities=16% Similarity=0.255 Sum_probs=244.6
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~ 415 (1088)
..+.|+||+++ +||+|. |++|+|||+.+|+.+.... +.+|...|++|+|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~~-----------------~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCcEEEEEECCCCCEEEEEE
Confidence 47889999875 688875 8999999999998775422 567889999999999999999999
Q ss_pred CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-ceeEEeccCCccEEEEeee
Q 001386 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPH 494 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~ 494 (1088)
.||+|+|||+.+++.++ .+.+|...+.+++++ +. ++++|+.|+.+++||.... ..+..+.+|...+..+.+.
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999987655 788999999998885 45 7999999999999998864 4567889999999999884
Q ss_pred eeCCceEEEEEecCCeEEEEECCCCCc----eEEecCCCCceEEEEEccCCCEE-EEEeeCCCCceeEEEEeCCCCceeE
Q 001386 495 AKENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRL-FSCGTSKEGESFLVEWNESEGAIKR 569 (1088)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~g~~l-~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1088)
+++.++++++.||.+++|+....+. ......+...|.+++|+|++..+ ++++. ..++.|++||+.+++...
T Consensus 240 --~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 240 --PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp --TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTTTEEEE
T ss_pred --CCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCccccce
Confidence 5778999999999999999987653 34567788899999999976654 44443 346789999999999998
Q ss_pred EEeccccccccEEEEEEeCCCCEEEEEe--CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEE
Q 001386 570 TYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1088)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1088)
.+..+. .+.++.|+++++.+++++ .|+.|+|||+.+++++..+.+|.. .|.+++|+|||++|++|+.|++|+
T Consensus 316 ~~~~~~----~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~--~V~~l~~spdg~~l~S~s~D~tvr 389 (420)
T 4gga_A 316 AVDAHS----QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLR 389 (420)
T ss_dssp EEECSS----CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEE
T ss_pred eecccc----ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEE
Confidence 887655 788999999999998865 789999999999999999987754 799999999999999999999999
Q ss_pred EEeCCCCCcccccc
Q 001386 648 ILETPESNSVDAAG 661 (1088)
Q Consensus 648 iwd~~~~~~~~~~~ 661 (1088)
|||+.+........
T Consensus 390 iWdv~~~~~~~~~~ 403 (420)
T 4gga_A 390 LWRCFELDPARRRE 403 (420)
T ss_dssp EECCSCSSCC----
T ss_pred EEECCCCCccchhh
Confidence 99998765544443
No 78
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.2e-32 Score=296.45 Aligned_cols=254 Identities=13% Similarity=0.157 Sum_probs=211.4
Q ss_pred eeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCC--cceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
+.++.+|.+.|++++|+|+|+ +||+|+.|++|+|||+.++ +.+.. +.+|.+.|.+++|
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~~-------------------l~gH~~~V~~v~~ 61 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLIDT-------------------LTGHEGPVWRVDW 61 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCEE-------------------ECCCSSCEEEEEE
T ss_pred ceeccCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEEE-------------------EccccCCeEEEEe
Confidence 356789999999999999999 6999999999999999754 33332 7889999999999
Q ss_pred CCC--CCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCC--CCcEEEEEEeCCCcEEEEeCCCCce--e
Q 001386 405 SPD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR--T 478 (1088)
Q Consensus 405 s~d--g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~s~d~~i~vwd~~~~~~--~ 478 (1088)
+|+ |++||+|+.|++|++||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|++|++||+.++.. .
T Consensus 62 s~~~~g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~ 138 (297)
T 2pm7_B 62 AHPKFGTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSP 138 (297)
T ss_dssp CCGGGCSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCC
T ss_pred cCCCcCCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceee
Confidence 874 899999999999999999987522 23357789999999999998 77 899999999999999987642 4
Q ss_pred EEeccCCccEEEEeeeeeC-----------CceEEEEEecCCeEEEEECCCCC----ceEEecCCCCceEEEEEccCC--
Q 001386 479 YSFEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSANG-- 541 (1088)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~g-- 541 (1088)
..+.+|...|.+++|+|.. ++.+|++|+.|++|++||++... ....+..|...|.+++|+|++
T Consensus 139 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~ 218 (297)
T 2pm7_B 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218 (297)
T ss_dssp EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCC
Confidence 6778999999999997752 35799999999999999998766 445678899999999999995
Q ss_pred -CEEEEEeeCCCCceeEEEEeCCCCc--ee-EEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 001386 542 -RRLFSCGTSKEGESFLVEWNESEGA--IK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1088)
Q Consensus 542 -~~l~~~~~~~~~~~~i~iwd~~~~~--~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 608 (1088)
++|++++. ++.|++||..++. .. ..+. ...+...|.+++|+|++++|++++.|+.|++|+..
T Consensus 219 ~~~las~s~----D~~v~iWd~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 219 RSYMASVSQ----DRTCIIWTQDNEQGPWKKTLLK-EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SEEEEEEET----TSCEEEEEESSTTSCCEEEESS-SSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ceEEEEEEC----CCcEEEEEeCCCCCccceeeee-cccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 78998876 5569999988753 12 2221 11223789999999999999999999999999976
No 79
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.3e-32 Score=310.33 Aligned_cols=343 Identities=12% Similarity=0.071 Sum_probs=252.8
Q ss_pred cCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCc--eeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEE
Q 001386 526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 603 (1088)
Q Consensus 526 ~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 603 (1088)
..+..+|.+++|+|++++|++++. ++.|++||..+++ .+..+.+|. ..|.+++|+|+++++++++.||.|+
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~----d~~v~i~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~~~~~dg~i~ 77 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPN----NHEVHIYEKSGNKWVQVHELKEHN---GQVTGVDWAPDSNRIVTCGTDRNAY 77 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECS----SSEEEEEEEETTEEEEEEEEECCS---SCEEEEEEETTTTEEEEEETTSCEE
T ss_pred cccCCCeEEEEECCCCCEEEEEeC----CCEEEEEeCCCCcEEeeeeecCCC---CcccEEEEeCCCCEEEEEcCCCeEE
Confidence 447789999999999999999865 5669999999987 888888887 8999999999999999999999999
Q ss_pred EEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccc
Q 001386 604 IWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI 683 (1088)
Q Consensus 604 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~ 683 (1088)
+||+.+++.........+...+.+++|+|+++++++++.|+.|++|++..+.......
T Consensus 78 vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~---------------------- 135 (372)
T 1k8k_C 78 VWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK---------------------- 135 (372)
T ss_dssp EEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE----------------------
T ss_pred EEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee----------------------
Confidence 9999998877666554555679999999999999999999999999987543211000
Q ss_pred cCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEc
Q 001386 684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 763 (1088)
Q Consensus 684 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~ 763 (1088)
.....|...|.+++|+|+++.+++++.||.+++|++
T Consensus 136 --------------------------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~ 171 (372)
T 1k8k_C 136 --------------------------------------------HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA 171 (372)
T ss_dssp --------------------------------------------EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred --------------------------------------------eeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEc
Confidence 000114455666666666666666666666666664
Q ss_pred cCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeE
Q 001386 764 PRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTAT 843 (1088)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 843 (1088)
..... .... .. .+.+ .....++.+..+..|...|.
T Consensus 172 ~~~~~-------------~~~~-----------~~--------~~~~-------------~~~~~~~~~~~~~~~~~~v~ 206 (372)
T 1k8k_C 172 YIKEV-------------EERP-----------AP--------TPWG-------------SKMPFGELMFESSSSCGWVH 206 (372)
T ss_dssp CCTTT-------------SCCC-----------CC--------BTTB-------------SCCCTTCEEEECCCCSSCEE
T ss_pred ccccc-------------cccc-----------cc--------cccc-------------cccchhhheEecCCCCCeEE
Confidence 32211 0000 00 0000 01345677788888999999
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCC--Cceeeeee
Q 001386 844 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG--WGIQTCRS 921 (1088)
Q Consensus 844 ~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~--~~~~~~~~ 921 (1088)
+++|+| ++++|++++.||.|++||+.+++.+..+.+|..+|.+++|+|++++|+++ .|+.|++|++.. ++ ...
T Consensus 207 ~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~---~~~ 281 (372)
T 1k8k_C 207 GVCFSA-NGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGK---LSF 281 (372)
T ss_dssp EEEECS-SSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTE---EEE
T ss_pred EEEECC-CCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCce---EEE
Confidence 999999 88999999999999999999999999999999999999999999988877 899999999987 53 122
Q ss_pred eecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEE---EcCcceee------eeeecCCCcCEEEEEEe-eCC---CE
Q 001386 922 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY---EAEELTCL------KQWFPISSVPISQATFS-CDC---RM 988 (1088)
Q Consensus 922 ~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vw---d~~~~~~~------~~~~~~h~~~v~~l~fs-~dg---~~ 988 (1088)
+.....+.. -..+....+++| +.. +... ..+..+|...|++++|. ++| .+
T Consensus 282 ~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~ 344 (372)
T 1k8k_C 282 GGRLDVPKQ----------------SSQRGLTARERFQNLDKK-ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQ 344 (372)
T ss_dssp CCCCCCC------------------------CHHHHHHHCCCC-C---------CCCSSSSSSCEEEEEEEESTTTSCSE
T ss_pred eeccCcccc----------------chhhhcchhhhhhhcccc-cccccCccccccccccccCCcceeEEecCCCcceee
Confidence 222222111 011122334455 422 2222 33345899999999865 676 99
Q ss_pred EEEEeCCCcEEEEEcCCCce
Q 001386 989 VFTSFVDGTLSIHEASNLEV 1008 (1088)
Q Consensus 989 l~s~s~dg~v~vwd~~~~~~ 1008 (1088)
|++|+.||.|++|++.+++.
T Consensus 345 l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 345 FCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp EEEEETTSEEEEEEHHHHHH
T ss_pred EEEecCCCceEEEEecChhH
Confidence 99999999999999988754
No 80
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-32 Score=304.88 Aligned_cols=288 Identities=12% Similarity=0.144 Sum_probs=257.7
Q ss_pred eeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEE
Q 001386 390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1088)
Q Consensus 390 ~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~v 469 (1088)
..+.+|...|++++|+|+|++||+++.||.|++||+.+++.+. .+.+|...|.+++|+|+++ ++++++.|+.|++
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~i 100 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKL 100 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEE
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEE
Confidence 3488999999999999999999999999999999999987655 6889999999999999999 8999999999999
Q ss_pred EeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecC-----CeEEEEECCCCCc-----------eEEecCCCC--c
Q 001386 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGA-----------RVDYDAPGL--G 531 (1088)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~-----------~~~~~~~~~--~ 531 (1088)
||+.+++++..+. +...|.+++|+ +++.++++++.+ |.|++||+..... ...+..+.. .
T Consensus 101 wd~~~~~~~~~~~-~~~~v~~~~~~--~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (369)
T 3zwl_B 101 WDVSNGQCVATWK-SPVPVKRVEFS--PCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA 177 (369)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEEC--TTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred EECCCCcEEEEee-cCCCeEEEEEc--cCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence 9999999999888 88999999995 467899999999 9999999976542 223334444 8
Q ss_pred eEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC-CceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 001386 532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1088)
Q Consensus 532 v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1088)
+.+++|+|+++++++++. ++.|++||+.+ ++.+..+..|. ..|.+++|+|++++|++++.|+.|++||+.++
T Consensus 178 ~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 178 ATVAGWSTKGKYIIAGHK----DGKISKYDVSNNYEYVDSIDLHE---KSISDMQFSPDLTYFITSSRDTNSFLVDVSTL 250 (369)
T ss_dssp EEEEEECGGGCEEEEEET----TSEEEEEETTTTTEEEEEEECCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred eeEEEEcCCCCEEEEEcC----CCEEEEEECCCCcEeEEEEecCC---CceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence 999999999999999875 56699999998 78888888887 89999999999999999999999999999999
Q ss_pred eeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCC--------------cEEEEeCCCCCcccccccccCcceeeeecCCC
Q 001386 611 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--------------RIKILETPESNSVDAAGVLSDNLRKLSVNPIS 676 (1088)
Q Consensus 611 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~ 676 (1088)
+.+..+... ..+..++|+|+++++++++.++ .+++||..+++.+..+.+|...|.+++++
T Consensus 251 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s--- 324 (369)
T 3zwl_B 251 QVLKKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAIS--- 324 (369)
T ss_dssp CEEEEEECS---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEEC---
T ss_pred ceeeeecCC---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEEC---
Confidence 999888743 3589999999999999999988 89999999999999999999999999998
Q ss_pred cceeccccCCceeecCCCCCCCCcccccccCccceeccccc
Q 001386 677 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1088)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 717 (1088)
|+++++++++.|+.+++|++..
T Consensus 325 -------------------~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 325 -------------------PQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp -------------------TTSSEEEEEETTSEEEEEEECH
T ss_pred -------------------CCCCEEEEEcCCCeEEEEECcc
Confidence 5788899999999999999764
No 81
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-33 Score=310.42 Aligned_cols=316 Identities=11% Similarity=0.027 Sum_probs=246.3
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEE
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 411 (1088)
.-.+.|.+|+|||||+ ++|+++.|++|+ |...++. +.+|...|.+++|+|||
T Consensus 13 ~~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg--- 64 (588)
T 2j04_A 13 EFEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE--- 64 (588)
T ss_dssp CCSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC---
T ss_pred HhhccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC---
Confidence 3346999999999999 799999999999 7555532 45799999999999999
Q ss_pred EEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCc-----
Q 001386 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA----- 486 (1088)
Q Consensus 412 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~----- 486 (1088)
.++.+.+|+.+....+ .+ .|...|.+++|||||+ .|++++.||.|++||.++ ++..+. |..
T Consensus 65 ----~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~ 130 (588)
T 2j04_A 65 ----FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSR 130 (588)
T ss_dssp ----CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTT
T ss_pred ----CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCccccc
Confidence 4555555554332211 12 5688999999999999 799999999999999544 667777 665
Q ss_pred cEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc-------eEEe----cCCCCceEEEEEccCCCEEEEEeeCCCCce
Q 001386 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-------RVDY----DAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1088)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~----~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 555 (1088)
.|.+++| ++||++|++|+.||+|++||+..+.. ...+ .+|...|.+++|+||| +++++. ++
T Consensus 131 sv~svaf--SPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D~ 202 (588)
T 2j04_A 131 TYHCFEW--NPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----NN 202 (588)
T ss_dssp CEEEEEE--CSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----TC
T ss_pred cEEEEEE--cCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----CC
Confidence 4999999 55889999999999999999998753 3444 5566799999999999 666654 55
Q ss_pred eEEEEeCCCCce---eEEEe-ccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEE-
Q 001386 556 FLVEWNESEGAI---KRTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF- 630 (1088)
Q Consensus 556 ~i~iwd~~~~~~---~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~- 630 (1088)
.+++||+.++.. .+++. +|. ..|.+++|+ ++.+++++ +++|++||+.+++.......| ...+..++|
T Consensus 203 tVrlWd~~~~~~~~~~~tL~~~h~---~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh--~~~V~~va~~ 274 (588)
T 2j04_A 203 SVFSMTVSASSHQPVSRMIQNASR---RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGS--LENFHIIPLN 274 (588)
T ss_dssp CEEEECCCSSSSCCCEEEEECCCS---SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSC--CSCCCEEEET
T ss_pred eEEEEECCCCccccceeeeccccc---CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCC--CceEEEEEee
Confidence 699999998774 35563 555 789999999 68888887 699999999988774444343 457999999
Q ss_pred -ecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCcc
Q 001386 631 -NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK 709 (1088)
Q Consensus 631 -s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 709 (1088)
+|++..+++++.+|+ ++|.... +++ +|++..+++. |++
T Consensus 275 ~s~d~~~La~a~edG~-klw~~d~----------------~~~----------------------spd~~l~a~~--d~~ 313 (588)
T 2j04_A 275 HEKESTILLMSNKTSY-KVLLEDE----------------LHV----------------------TADNIIAPYL--EKK 313 (588)
T ss_dssp TCSSCEEEEECSSCEE-EEEESSS----------------EEE----------------------ECCCSSHHHH--HHH
T ss_pred eCCCCCEEEEEcCCCC-EEEeecc----------------EEE----------------------CCCceEEEEc--CCE
Confidence 999999999999999 9999871 223 3667777765 899
Q ss_pred ceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEecc
Q 001386 710 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS 754 (1088)
Q Consensus 710 i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 754 (1088)
+++|+...... . ...+...|.+++|||||+.+++++.
T Consensus 314 v~lW~~~g~~l---~-----~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 314 FKKWSTIWNEF---N-----NYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp HHHTTTTTTSS---S-----SSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred EEEEECCCCce---e-----eeccceEEEEEEECCCCCEEEEEEe
Confidence 99999743321 1 1123567999999999998887764
No 82
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.8e-32 Score=310.58 Aligned_cols=296 Identities=16% Similarity=0.151 Sum_probs=250.9
Q ss_pred eEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCC------ceEEecCCCCceEEEEEccC----C---CEE
Q 001386 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG------ARVDYDAPGLGCTRMAYSAN----G---RRL 544 (1088)
Q Consensus 478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~~~~s~~----g---~~l 544 (1088)
...+.+|...|++++|++ .+|++++.||.|++||+.... ....+..+...|.+++|+|+ + ++|
T Consensus 9 ~~~~~~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEESSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 456789999999999965 599999999999999999888 67788889999999999999 9 999
Q ss_pred EEEeeCCCCceeEEEEeCCCCce-----eEEEeccccc--cccEEEEEEe----CCCCE-EEEEeCCCcEEEEEcCC---
Q 001386 545 FSCGTSKEGESFLVEWNESEGAI-----KRTYQGLQLQ--HNSVSVVHFD----TAKDQ-ILAAGDDHVIKIWDMNK--- 609 (1088)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~-----~~~~~~~~~~--~~~v~~~~~~----~~~~~-l~~~s~dg~i~iwd~~~--- 609 (1088)
++++. ++.|++||+.+++. ...+..|..+ ...|.+++|+ |++++ +++++.||.|++||+.+
T Consensus 85 ~s~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 85 ATTSF----SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEEET----TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred EEEcC----CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 99876 45599999999887 8888877322 3789999999 99999 99999999999999998
Q ss_pred ---CeeeE-----EEeC-----CCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCC
Q 001386 610 ---VQLLT-----TIDA-----GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS 676 (1088)
Q Consensus 610 ---~~~~~-----~~~~-----~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~ 676 (1088)
++.+. .+.. ..+...+.+++|+|++ ++++++.||.|++||+.+++.+..+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------- 225 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES-------------- 225 (397)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEEC--------------
T ss_pred ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEec--------------
Confidence 66665 6643 3334568999999999 999999999999999875422111000
Q ss_pred cceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEecccc
Q 001386 677 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG 756 (1088)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg 756 (1088)
.
T Consensus 226 ----------------------------------------------------------------------------~--- 226 (397)
T 1sq9_A 226 ----------------------------------------------------------------------------Q--- 226 (397)
T ss_dssp ----------------------------------------------------------------------------C---
T ss_pred ----------------------------------------------------------------------------c---
Confidence 0
Q ss_pred ceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCC---CCCeeEEEEecCCCEEEEEe-C---CcEEEEEcCCc
Q 001386 757 VHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNS---QEAVPCFALSKNDAYLFSAS-G---GVISLYIVMTF 829 (1088)
Q Consensus 757 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~dg~~l~~~~-d---g~i~iwd~~~~ 829 (1088)
.+| ...|.+++|+|++++|++++ + +.|++||+.++
T Consensus 227 --------------------------------------~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~ 268 (397)
T 1sq9_A 227 --------------------------------------HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG 268 (397)
T ss_dssp --------------------------------------C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC
T ss_pred --------------------------------------ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 014 67788999999999999987 7 89999999999
Q ss_pred eeEEEecC-------------CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeec------cc---------
Q 001386 830 KTILTIMP-------------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE------GH--------- 881 (1088)
Q Consensus 830 ~~~~~~~~-------------~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~------~h--------- 881 (1088)
+.+..+.. |...|.+++|+| ++++|++|+.||.|++||+.+++.+..+. +|
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 347 (397)
T 1sq9_A 269 ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDE 347 (397)
T ss_dssp CEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCT
T ss_pred cccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcccc
Confidence 99999998 999999999999 89999999999999999999999999999 88
Q ss_pred ------cCCeeEEEECCCC----------CEEEEEeCCCcEEEEEcCCC
Q 001386 882 ------SKRVTGLVFSDAL----------NILVSSGGDAQIFVWDVDGW 914 (1088)
Q Consensus 882 ------~~~V~~l~~s~dg----------~~las~s~Dg~i~iwd~~~~ 914 (1088)
...|.+++|+|++ ++|++++.||.|++|++.++
T Consensus 348 ~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 348 HGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp TSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 9999999999998 79999999999999999875
No 83
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=8.4e-32 Score=329.42 Aligned_cols=211 Identities=19% Similarity=0.315 Sum_probs=183.9
Q ss_pred EeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-----ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCe
Q 001386 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK 510 (1088)
Q Consensus 436 ~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 510 (1088)
.+.+|.+.|++++|+|++.. +|+||+.|++|++||+.++ .....+.+|...|.+++|+ +++.+|++|+.||.
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~-~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNAD-IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS--SDGQFALSGSWDGE 453 (694)
T ss_dssp EEECCSSCEEEEECCTTCCS-EEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEEC--TTSSEEEEEETTSE
T ss_pred hcccCCceeEEEEecCCCCC-EEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEEC--CCCCEEEEEeCCCc
Confidence 57899999999999998654 8999999999999998764 3457889999999999995 57789999999999
Q ss_pred EEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCC
Q 001386 511 IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 590 (1088)
Q Consensus 511 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 590 (1088)
|++||+.+......+..|...|.+++|+|++++|++++. ++.|++||...............|...|.+++|+|++
T Consensus 454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 529 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR----DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529 (694)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred EEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC----CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence 999999999888899999999999999999999999986 4569999987665544443333445889999999987
Q ss_pred --CEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 591 --DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1088)
Q Consensus 591 --~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 655 (1088)
..+++++.|++|++||+.+++....+..|.. .|.+++|+|++++|++++.||.|++||+.+++
T Consensus 530 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~ 594 (694)
T 3dm0_A 530 LQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG--YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK 594 (694)
T ss_dssp SSCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSEEEEEETTSBCEEEETTTTE
T ss_pred CcceEEEEeCCCeEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 6899999999999999999999988887654 69999999999999999999999999988653
No 84
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-34 Score=317.72 Aligned_cols=330 Identities=10% Similarity=0.031 Sum_probs=249.1
Q ss_pred CCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 001386 528 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1088)
Q Consensus 528 ~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1088)
-...|.+++|+|||+++|+++. +++|+ |...++.+ .+|. ..|.+++|+|+| .++.+.+|+.
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~----D~TV~--d~~~~~~l---~gh~---~~v~~V~FsPdg-------~~~~~~~~~~ 74 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFP----DISIG--QPKYAKDI---NCNS---KNLFHVKEFPLE-------FENKLDFELA 74 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSS----SEEEE--EECCCSCC---SSBG---GGTEEEEEECCC-------CCCTTTTSCC
T ss_pred hhccEEEEEECCCCCEEEEEcC----Cceee--ccccccee---cCCC---ccEEEEEECCCC-------CcceEEEEeC
Confidence 3457899999999999999875 66687 76666544 5666 899999999998 4566555554
Q ss_pred CCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCc
Q 001386 608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 687 (1088)
Q Consensus 608 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~ 687 (1088)
+. ...+.... ...|.+++|||+|.+||+++.||.|++|+... .+..+. |...+
T Consensus 75 ~~---~~~~~~~~-~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~-------------------- 127 (588)
T 2j04_A 75 QQ---NGLLNSQP-VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNL-------------------- 127 (588)
T ss_dssp CS---SCSSTTSC-SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCS--------------------
T ss_pred CC---ceEeecCC-CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCcc--------------------
Confidence 32 22222112 45799999999999999999999999999542 111111 11000
Q ss_pred eeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCC
Q 001386 688 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 767 (1088)
Q Consensus 688 ~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~ 767 (1088)
....+.+++|||||++|++++.||.|++|++..+.
T Consensus 128 ---------------------------------------------~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~ 162 (588)
T 2j04_A 128 ---------------------------------------------SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNS 162 (588)
T ss_dssp ---------------------------------------------TTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCT
T ss_pred ---------------------------------------------ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCc
Confidence 12458899999999999999999999999976542
Q ss_pred CCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCcee---EEEe-cCCCCCeE
Q 001386 768 LTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTI-MPPSPTAT 843 (1088)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~---~~~~-~~~~~~i~ 843 (1088)
... ++. ..+.+......+|...|.+++|+||| +++++.|++|++||+.+++. .+++ .+|...|.
T Consensus 163 l~~-----~~~------i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~ 230 (588)
T 2j04_A 163 ENT-----PEF------YFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKIT 230 (588)
T ss_dssp TTC-----CCC------EEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCC
T ss_pred ccc-----ccc------eeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEE
Confidence 100 000 00122221223588999999999999 55555699999999988773 3566 47888999
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEE--CCCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 001386 844 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF--SDALNILVSSGGDAQIFVWDVDGWGIQTCRS 921 (1088)
Q Consensus 844 ~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~--s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~ 921 (1088)
+++|+ ++.||+++ +++|++||+.+++......+|.+.|..++| +||+..|+++++||+ ++|..+.
T Consensus 231 svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~-------- 297 (588)
T 2j04_A 231 DLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE-------- 297 (588)
T ss_dssp CEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS--------
T ss_pred EEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc--------
Confidence 99998 37888887 699999999988874444489999999999 999999999999999 9999872
Q ss_pred eecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEe
Q 001386 922 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 993 (1088)
Q Consensus 922 ~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s 993 (1088)
++|+||+..++.. |+++++|+...+. +. .+.+ ...|.+++|||||+.+|+++
T Consensus 298 ----------------~~~spd~~l~a~~-d~~v~lW~~~g~~-l~-~~~~-~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 298 ----------------LHVTADNIIAPYL-EKKFKKWSTIWNE-FN-NYET-TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp ----------------EEEECCCSSHHHH-HHHHHHTTTTTTS-SS-SSCC-EEEEEEEEECTTSSEEEEEE
T ss_pred ----------------EEECCCceEEEEc-CCEEEEEECCCCc-ee-eecc-ceEEEEEEECCCCCEEEEEE
Confidence 5599999988886 9999999986555 33 2333 77799999999999999885
No 85
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=8.4e-32 Score=307.89 Aligned_cols=348 Identities=14% Similarity=0.129 Sum_probs=247.6
Q ss_pred hhheeecccCCCCceeeeecC-CCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~sp-dg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 402 (1088)
......+.+|.+.|++++|+| +|+ +|++|+.||.|+|||+.+++.......... .........+|...|.++
T Consensus 33 ~~~~~~~~~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~ 105 (408)
T 4a11_B 33 NKDRDVERIHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAV------CSIGRDHPDVHRYSVETV 105 (408)
T ss_dssp CTTEEECCCCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEE------EEECTTCTTCCSSCEEEE
T ss_pred CcceeeeeccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEecccc------ccccccccccCCCcEEEE
Confidence 345677889999999999999 998 799999999999999999876654221100 000011124699999999
Q ss_pred EECC-CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCC---CCcEEEEEEeCCCcEEEEeCCCCcee
Q 001386 403 VWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCGDDKTIKVWDAVTGSRT 478 (1088)
Q Consensus 403 ~~s~-dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d---~~~l~l~s~s~d~~i~vwd~~~~~~~ 478 (1088)
+|+| ++.+|++++.||.|++||+.+++... .+ .+...+.+++|++. +. ++++++.|+.|++||+.+++.+
T Consensus 106 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~d~~~~~~~ 179 (408)
T 4a11_B 106 QWYPHDTGMFTSSSFDKTLKVWDTNTLQTAD---VF-NFEETVYSHHMSPVSTKHC--LVAVGTRGPKVQLCDLKSGSCS 179 (408)
T ss_dssp EECTTCTTCEEEEETTSEEEEEETTTTEEEE---EE-ECSSCEEEEEECSSCSSCC--EEEEEESSSSEEEEESSSSCCC
T ss_pred EEccCCCcEEEEEeCCCeEEEeeCCCCccce---ec-cCCCceeeeEeecCCCCCc--EEEEEcCCCeEEEEeCCCccee
Confidence 9999 88899999999999999999987554 23 47788999999984 44 7899999999999999999999
Q ss_pred EEeccCCccEEEEeeeeeCCce-EEEEEecCCeEEEEECCCCCc-eEEe---------------cCCCCceEEEEEccCC
Q 001386 479 YSFEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGA-RVDY---------------DAPGLGCTRMAYSANG 541 (1088)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~-~~~~---------------~~~~~~v~~~~~s~~g 541 (1088)
..+.+|...|.+++|++ ++. ++++++.||.|++||++.... ...+ ..+...|.+++|+|++
T Consensus 180 ~~~~~~~~~v~~~~~~~--~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 257 (408)
T 4a11_B 180 HILQGHRQEILAVSWSP--RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG 257 (408)
T ss_dssp EEECCCCSCEEEEEECS--SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS
T ss_pred eeecCCCCcEEEEEECC--CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC
Confidence 99999999999999965 445 699999999999999987652 2222 4567789999999999
Q ss_pred CEEEEEeeCCCCceeEEEEeCCCCceeEEEecccc--ccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCC
Q 001386 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1088)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1088)
++|++++. ++.|++||+.+++....+..+.. ....+........+..+++++.++.|++||+.+++.+..+..|
T Consensus 258 ~~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~ 333 (408)
T 4a11_B 258 LHLLTVGT----DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH 333 (408)
T ss_dssp SEEEEEET----TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC
T ss_pred CEEEEecC----CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC
Confidence 99999986 45599999999877655443320 0112222233344567778888999999999999999999866
Q ss_pred CCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCC
Q 001386 620 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK 699 (1088)
Q Consensus 620 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1088)
.. .|.+++|+|++++|++++.||.|++|++.+++.+......... ..+. .....
T Consensus 334 ~~--~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~---------------------~~~~~ 387 (408)
T 4a11_B 334 YK--TVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLN---------------------PAFED 387 (408)
T ss_dssp SS--CEEEEEEETTTTEEEEEETTSCEEEEEECC----------------------------------------------
T ss_pred CC--eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccc---------------------cccce
Confidence 44 6999999999999999999999999999988765543322111 1111 12334
Q ss_pred cccccccCccceecccc
Q 001386 700 PEISVEAENKSEVEKPL 716 (1088)
Q Consensus 700 ~l~~~~~d~~i~vw~~~ 716 (1088)
...+.+.++.+++|+..
T Consensus 388 ~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 388 AWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp -----------------
T ss_pred eecccCccCceeecCCc
Confidence 45567778999999853
No 86
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=6.4e-32 Score=292.80 Aligned_cols=252 Identities=17% Similarity=0.299 Sum_probs=212.7
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCC--CCcEEEEEEeCCCcEEE
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 469 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~s~d~~i~v 469 (1088)
+.+|...|.+++|+|||++||+|+.|++|+|||+.++.. +....+.+|.+.|.+++|+++ ++ +|++|+.|++|++
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~i 81 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVMI 81 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEEE
Confidence 678999999999999999999999999999999975421 233478899999999999874 77 8999999999999
Q ss_pred EeCCCCc--eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc--eEEecCCCCceEEEEEccC-----
Q 001386 470 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSAN----- 540 (1088)
Q Consensus 470 wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~----- 540 (1088)
||+.+++ .+..+.+|...|.+++|+|..++.+|++++.||.|++||++.... ...+..|...|.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9999874 567888999999999998765578999999999999999987642 4567788889999999997
Q ss_pred --------CCEEEEEeeCCCCceeEEEEeCCCCc----eeEEEeccccccccEEEEEEeCCC---CEEEEEeCCCcEEEE
Q 001386 541 --------GRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIW 605 (1088)
Q Consensus 541 --------g~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~s~dg~i~iw 605 (1088)
+++|++++. ++.|++||+.++. ....+.+|. ..|.+++|+|++ .+|++++.|++|++|
T Consensus 162 ~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~---~~V~~v~~sp~~~~~~~las~s~D~~v~iW 234 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234 (297)
T ss_dssp --------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred ccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCC---CceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence 578999886 4569999998776 566777777 899999999985 889999999999999
Q ss_pred EcCCCe--ee-EEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCC
Q 001386 606 DMNKVQ--LL-TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1088)
Q Consensus 606 d~~~~~--~~-~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 653 (1088)
|+.++. .. ..+........|.+++|+|++++|++++.|+.|++|+...
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 998743 12 2232233345689999999999999999999999999763
No 87
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=5.7e-31 Score=289.49 Aligned_cols=282 Identities=16% Similarity=0.269 Sum_probs=237.6
Q ss_pred ceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeC
Q 001386 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 416 (1088)
Q Consensus 337 V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~ 416 (1088)
.++|+||+++ +||+|. |++|+|||+.+|+++.... +.+|...|.+++|+|+|++||+|+.
T Consensus 28 ~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~~-----------------~~~~~~~V~~v~~~~~~~~l~sgs~ 87 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGTS 87 (318)
T ss_dssp CBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEET
T ss_pred ceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCeEEEEEECCCCCEEEEEEC
Confidence 5789999987 678775 8999999999998876522 5678999999999999999999999
Q ss_pred CCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-ceeEEeccCCccEEEEeeee
Q 001386 417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPHA 495 (1088)
Q Consensus 417 dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~ 495 (1088)
||+|++||+.+++.++ .+.+|...+.++.+. +. .+++++.++.+++|+..++ ..+..+.+|...+..+.+.
T Consensus 88 Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~~--~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 159 (318)
T 4ggc_A 88 SAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA- 159 (318)
T ss_dssp TSEEEEEETTTTEEEE---EEECCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC-
T ss_pred CCcEEEeecCCceeEE---EecCccceEEEeecC--CC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEc-
Confidence 9999999999997665 678999988876654 55 7999999999999998876 4557888999999999884
Q ss_pred eCCceEEEEEecCCeEEEEECCCCCc----eEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEE
Q 001386 496 KENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1088)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1088)
+++.++++++.||.|++||+++.+. ......+...+.+++++|++..++.... +..++.|++||..........
T Consensus 160 -~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 160 -PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp -TTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEEE
T ss_pred -CCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEecccccccccc
Confidence 5678999999999999999987653 3455567778999999998776654332 234678999999988877665
Q ss_pred eccccccccEEEEEEeCCCCEEEEEe--CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEE
Q 001386 572 QGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 649 (1088)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 649 (1088)
... ..+..+.|+|++..+++++ .|+.|++||+.+++++..+..|.. .|.+++|+|++++|++++.||+|+||
T Consensus 238 ~~~----~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~--~V~~l~~spdg~~l~S~s~D~~v~iW 311 (318)
T 4ggc_A 238 DAH----SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLRLW 311 (318)
T ss_dssp ECS----SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred cce----eeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 543 5799999999999988765 799999999999999999987654 79999999999999999999999999
Q ss_pred eCCCC
Q 001386 650 ETPES 654 (1088)
Q Consensus 650 d~~~~ 654 (1088)
|+.+.
T Consensus 312 d~~~~ 316 (318)
T 4ggc_A 312 RCFEL 316 (318)
T ss_dssp CCSCC
T ss_pred ECCCC
Confidence 98754
No 88
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=9.9e-32 Score=302.21 Aligned_cols=299 Identities=16% Similarity=0.244 Sum_probs=243.3
Q ss_pred eecCCCCCeEEEEECCC----CCEEEEEeCCCEEEEEEccCCCcccceeEec--cCCCCEEEEEecCC----CCcEEEEE
Q 001386 391 LVRDPGVSVNRVVWSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAP----CKQISVIT 460 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~d----g~~las~~~dg~i~vwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~d----~~~l~l~s 460 (1088)
+..+|...|.+++|+|+ ...+++++.++.|++||+.+++.+..+.... .|...|.+++|+|+ ++ ++++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~ 90 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAV 90 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEE
Confidence 46689999999999984 4566666677799999999887665443332 26688999999999 55 7999
Q ss_pred EeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEe---cCCCCceEEEEE
Q 001386 461 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY---DAPGLGCTRMAY 537 (1088)
Q Consensus 461 ~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~ 537 (1088)
|+.||.|++||+.+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||+++.+....+ ..+...|.+++|
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence 999999999999999999999999999999999652 5679999999999999999998888777 678889999999
Q ss_pred ccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEec-------------------------cccccccEEEEEEeCCCCE
Q 001386 538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG-------------------------LQLQHNSVSVVHFDTAKDQ 592 (1088)
Q Consensus 538 s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-------------------------~~~~~~~v~~~~~~~~~~~ 592 (1088)
+|++++|++++. ++.|++||+.+++....+.. ...+...|.+++|+ +++
T Consensus 170 ~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 243 (366)
T 3k26_A 170 DLLGEKIMSCGM----DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDL 243 (366)
T ss_dssp CTTSSEEEEEET----TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTE
T ss_pred CCCCCEEEEecC----CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCE
Confidence 999999999986 45599999998765543332 00123889999998 779
Q ss_pred EEEEeCCCcEEEEEcCCCee--------------eEEEeCCCCCCCCceEEEecC--CCEEEEEeCCCcEEEEeCCCCCc
Q 001386 593 ILAAGDDHVIKIWDMNKVQL--------------LTTIDAGGGLPENPRICFNKN--GTLLAVIANENRIKILETPESNS 656 (1088)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iwd~~~~~~ 656 (1088)
+++++.|+.|++||+.++.. +..+..+. ..|.+++|+|+ +++|++++.||.|++||+.+++.
T Consensus 244 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~ 321 (366)
T 3k26_A 244 ILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ--CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP 321 (366)
T ss_dssp EEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS--CCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred EEEEecCCEEEEEeCCCccccccccccCCcchheeccccccC--CcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC
Confidence 99999999999999987644 66666554 36899999999 99999999999999999987654
Q ss_pred ccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCcccccc
Q 001386 657 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK 736 (1088)
Q Consensus 657 ~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 736 (1088)
..... ..+....+...
T Consensus 322 ~~~~~----------------------------------------------------------------~~~~~~~~~~~ 337 (366)
T 3k26_A 322 HKAKC----------------------------------------------------------------TTLTHHKCGAA 337 (366)
T ss_dssp GGCEE----------------------------------------------------------------EEECCTTCCSC
T ss_pred ccccc----------------------------------------------------------------eEEcccccCCc
Confidence 32100 00111113678
Q ss_pred EEEEEEecCCceEEEeccccceEEEEcc
Q 001386 737 ISRLTYNNGGQAIFALASNGVHLMWRWP 764 (1088)
Q Consensus 737 i~~~~~s~~g~~l~~~~~dg~v~iw~~~ 764 (1088)
|.+++|+|++++|++++.||.|++|++.
T Consensus 338 v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 338 IRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred eEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999999999999999999999864
No 89
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-31 Score=287.96 Aligned_cols=295 Identities=15% Similarity=0.191 Sum_probs=244.0
Q ss_pred CceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCC
Q 001386 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1088)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1088)
.+....+.+|. ..|.+++| ++++++++++.||.|++||+.+++....+..+.. .|.+++|+|+++++++++.||
T Consensus 8 ~~~~~~l~~h~---~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg 81 (313)
T 3odt_A 8 YQLSATLKGHD---QDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQG--FLNSVCYDSEKELLLFGGKDT 81 (313)
T ss_dssp CEEEEEECCCS---SCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSS--CEEEEEEETTTTEEEEEETTS
T ss_pred HHHHHHhhCCC---CCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCc--cEEEEEECCCCCEEEEecCCC
Confidence 36677888888 99999999 9999999999999999999999998888887643 699999999999999999999
Q ss_pred cEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcce
Q 001386 645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 724 (1088)
Q Consensus 645 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~ 724 (1088)
.+++|++.........
T Consensus 82 ~i~~~~~~~~~~~~~~---------------------------------------------------------------- 97 (313)
T 3odt_A 82 MINGVPLFATSGEDPL---------------------------------------------------------------- 97 (313)
T ss_dssp CEEEEETTCCTTSCC-----------------------------------------------------------------
T ss_pred eEEEEEeeecCCCCcc----------------------------------------------------------------
Confidence 9999998743110000
Q ss_pred eeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEE
Q 001386 725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 804 (1088)
Q Consensus 725 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 804 (1088)
.. + ..|...|.++
T Consensus 98 ---------------------------------------------------------------~~--~--~~~~~~i~~~ 110 (313)
T 3odt_A 98 ---------------------------------------------------------------YT--L--IGHQGNVCSL 110 (313)
T ss_dssp ---------------------------------------------------------------CE--E--CCCSSCEEEE
T ss_pred ---------------------------------------------------------------cc--h--hhcccCEEEE
Confidence 00 0 0266677788
Q ss_pred EEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecc-cc
Q 001386 805 ALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HS 882 (1088)
Q Consensus 805 ~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~-h~ 882 (1088)
++ ++.++++++ ++.|++|| .++....+..|...+.+++|+|.++.++++++.||.|++|| .++.+..+.. |.
T Consensus 111 ~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~ 184 (313)
T 3odt_A 111 SF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHN 184 (313)
T ss_dssp EE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCS
T ss_pred Ee--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCc
Confidence 87 566788877 88999999 67888888899999999999886788999999999999999 5566677777 99
Q ss_pred CCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCc
Q 001386 883 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 962 (1088)
Q Consensus 883 ~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~ 962 (1088)
..|.+++|+|++. +++++.||.|++||+.+++. +....+|.. .|.+++|+|++.+++.+.|+.|++||+.+
T Consensus 185 ~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~---~i~~~~~~~~~~l~~~~~dg~v~iwd~~~ 255 (313)
T 3odt_A 185 DVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDV-----LRTYEGHES---FVYCIKLLPNGDIVSCGEDRTVRIWSKEN 255 (313)
T ss_dssp SCEEEEEEEETTE-EEEEETTSEEEEEETTTCCE-----EEEEECCSS---CEEEEEECTTSCEEEEETTSEEEEECTTT
T ss_pred ccEEEEEEcCCCe-EEEccCCCeEEEEECCchhh-----hhhhhcCCc---eEEEEEEecCCCEEEEecCCEEEEEECCC
Confidence 9999999999998 99999999999999998653 333334443 79999999999655557899999999999
Q ss_pred ceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001386 963 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 963 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1013 (1088)
++++..+ ..|...|.+++|+||++ +++++.||.|++|++.+++......
T Consensus 256 ~~~~~~~-~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 256 GSLKQVI-TLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE 304 (313)
T ss_dssp CCEEEEE-ECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred CceeEEE-eccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence 9988874 57889999999999998 5679999999999999988765443
No 90
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.1e-31 Score=297.01 Aligned_cols=310 Identities=13% Similarity=0.157 Sum_probs=242.9
Q ss_pred eecCCCCCeEEEEECCCCCEEE-EEeC---CCEEEEEEccCCCcccceeEeccCCCCEEEEEecCC---CCcEEEEEEeC
Q 001386 391 LVRDPGVSVNRVVWSPDGSLLG-VAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCGD 463 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~dg~~la-s~~~---dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d---~~~l~l~s~s~ 463 (1088)
++.+|...|.+++|+|++..++ +|+. |+.|++||+.+++.... ...+|...|.+++|+|+ ++ ++++++.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~~ 88 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGDF 88 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEET
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEecC
Confidence 4677999999999999996555 5555 89999999998875432 23379999999999999 57 7999999
Q ss_pred CCcEEEEeCCCCc-eeEEeccCCccEEEEeeee----eCCceEEEEEecCCeEEEEECCCCC-ceEEecCCCC----ceE
Q 001386 464 DKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHA----KENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGL----GCT 533 (1088)
Q Consensus 464 d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~----~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~----~v~ 533 (1088)
|+.|++||+.+++ .+..+.+|...|.++.+.+ ++++.+|++++.||.|++||++... ....+..+.. .+.
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 168 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW 168 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence 9999999999998 8899999999999997743 5678899999999999999999887 5556655443 788
Q ss_pred EEE----EccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeC---CCCEEEEEeCCCcEEEEE
Q 001386 534 RMA----YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT---AKDQILAAGDDHVIKIWD 606 (1088)
Q Consensus 534 ~~~----~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~s~dg~i~iwd 606 (1088)
+++ |+|+++++++++. ++.|++||+.+++.... ..+. ..+.+++|+| ++.++++++.||.|++||
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~-~~~~---~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d 240 (357)
T 3i2n_A 169 TVAFGNAYNQEERVVCAGYD----NGDIKLFDLRNMALRWE-TNIK---NGVCSLEFDRKDISMNKLVATSLEGKFHVFD 240 (357)
T ss_dssp EEEEECCCC-CCCEEEEEET----TSEEEEEETTTTEEEEE-EECS---SCEEEEEESCSSSSCCEEEEEESTTEEEEEE
T ss_pred EEEEEeccCCCCCEEEEEcc----CCeEEEEECccCceeee-cCCC---CceEEEEcCCCCCCCCEEEEECCCCeEEEEe
Confidence 888 7899999999975 55699999999887544 4444 7899999999 999999999999999999
Q ss_pred cCCCeeeEEEe-----CCCCCCCCceEEEecCCC-EEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCccee
Q 001386 607 MNKVQLLTTID-----AGGGLPENPRICFNKNGT-LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 680 (1088)
Q Consensus 607 ~~~~~~~~~~~-----~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 680 (1088)
+.+++....+. .+ ...|.+++|+|+++ ++++++.||.|++||+..+........
T Consensus 241 ~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------------ 300 (357)
T 3i2n_A 241 MRTQHPTKGFASVSEKAH--KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDS------------------ 300 (357)
T ss_dssp EEEEETTTEEEEEEEECC--SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCT------------------
T ss_pred CcCCCcccceeeeccCCC--cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccC------------------
Confidence 98877665554 44 44699999999998 899999999999999986643322110
Q ss_pred ccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEE-EeccccceE
Q 001386 681 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIF-ALASNGVHL 759 (1088)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~-~~~~dg~v~ 759 (1088)
++...... +... .......|...|.+++|+|+++.++ +++.||.++
T Consensus 301 ----------------~g~~~~~~---~~~~--------------~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~ 347 (357)
T 3i2n_A 301 ----------------EGIEMGVA---GSVS--------------LLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVR 347 (357)
T ss_dssp ----------------TSCCCCCC---CEEE--------------EEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEE
T ss_pred ----------------CCCccccc---cccc--------------eeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEE
Confidence 11111000 0000 0011123778999999999999998 799999999
Q ss_pred EEEccC
Q 001386 760 MWRWPR 765 (1088)
Q Consensus 760 iw~~~~ 765 (1088)
+|++..
T Consensus 348 iw~~~~ 353 (357)
T 3i2n_A 348 VLIVTK 353 (357)
T ss_dssp EEEECC
T ss_pred EEECCC
Confidence 999764
No 91
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.2e-31 Score=310.82 Aligned_cols=301 Identities=13% Similarity=0.199 Sum_probs=233.0
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCC------------CCe
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG------------VSV 399 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~------------~~V 399 (1088)
.|.+.|++++|+|+|+ +||+|+.||.|+|||+.+++....... ........+.+|. ..|
T Consensus 26 ~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~--------~~~~~~~~~~~h~~~~~~~~~~~~~~~V 96 (447)
T 3dw8_B 26 AEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSR--------GEYNVYSTFQSHEPEFDYLKSLEIEEKI 96 (447)
T ss_dssp CGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCC--------CCEEEEEEEECCCCEEEGGGTEEECCCC
T ss_pred cccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcccc--------cceeEecccccccccccccccccccCce
Confidence 4677999999999999 799999999999999998763110000 0000111266788 889
Q ss_pred EEEEECCCC--CEEEEEeCCCEEEEEEccCCCccc------------------------------------ceeE-eccC
Q 001386 400 NRVVWSPDG--SLLGVAYSKHIVQLYAYHGGSDAR------------------------------------QQLE-IDAH 440 (1088)
Q Consensus 400 ~~l~~s~dg--~~las~~~dg~i~vwd~~~~~~~~------------------------------------~~~~-~~~h 440 (1088)
.+++|+|++ .+|++++.|++|++||+.++.... .... ..+|
T Consensus 97 ~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 176 (447)
T 3dw8_B 97 NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH 176 (447)
T ss_dssp CEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC
T ss_pred EEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC
Confidence 999999998 899999999999999998743210 0001 3689
Q ss_pred CCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC-CceeE-------EeccCCccEEEEeeeeeCCc-eEEEEEecCCeE
Q 001386 441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTY-------SFEGHGAPVYSLCPHAKENI-HFIFSISVDGKI 511 (1088)
Q Consensus 441 ~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~-~~~~~-------~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i 511 (1088)
...|.+++|+|+++ ++++| .|+.|++||+.+ ++.+. .+.+|...|.+++|++ ++ .+|++++.||.|
T Consensus 177 ~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 177 TYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP--NSCNTFVYSSSKGTI 251 (447)
T ss_dssp SSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS--SCTTEEEEEETTSCE
T ss_pred CcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC--CCCcEEEEEeCCCeE
Confidence 99999999999999 78888 799999999984 44444 2568999999999965 55 799999999999
Q ss_pred EEEECCCCCc----eEEecCCCC------------ceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC-CceeEEEecc
Q 001386 512 KAWLYDSLGA----RVDYDAPGL------------GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGL 574 (1088)
Q Consensus 512 ~iwd~~~~~~----~~~~~~~~~------------~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~ 574 (1088)
++||+++... ...+..+.. .|.+++|+|+|++|++++. +.|++||+.+ ++.+..+.+|
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----~~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-----LSVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-----SEEEEEETTCCSSCSCCEESC
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-----CeEEEEeCCCCccccceeecc
Confidence 9999998876 667777765 8999999999999998863 5699999997 8888888887
Q ss_pred ccccc------------cEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCC-----------------------
Q 001386 575 QLQHN------------SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG----------------------- 619 (1088)
Q Consensus 575 ~~~~~------------~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~----------------------- 619 (1088)
..... .+..++|+|++++|++++.||.|++||+.+++.+......
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD 406 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence 62111 1334899999999999999999999999998876422110
Q ss_pred -------CCCCCCceEEEecCCCEEEEEeCCCcEEEEeCC
Q 001386 620 -------GGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 620 -------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
.....|..++|+|++++||+++.++ +++|...
T Consensus 407 ~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 407 EISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred cccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 1123578899999999999998875 7777643
No 92
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4.3e-32 Score=296.98 Aligned_cols=253 Identities=15% Similarity=0.205 Sum_probs=205.2
Q ss_pred eecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-
Q 001386 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 406 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~- 406 (1088)
.++.+|.+.|++++|+|+|+ +||+|+.|++|+|||+.++..... ..+.+|.+.|.+++|+|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~~-----------------~~l~gH~~~V~~v~~~~~ 68 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILI-----------------ADLRGHEGPVWQVAWAHP 68 (316)
T ss_dssp -------CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEECCG
T ss_pred eecccccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEEE-----------------EEEcCCCccEEEEEeCCC
Confidence 45679999999999999999 799999999999999988753211 12778999999999986
Q ss_pred -CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCC--CCcEEEEEEeCCCcEEEEeCCCCce---eEE
Q 001386 407 -DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR---TYS 480 (1088)
Q Consensus 407 -dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~s~d~~i~vwd~~~~~~---~~~ 480 (1088)
++++||+|+.|++|++||+.+++.. ....+.+|...|.+++|+|+ +. +|++|+.|++|++||+.++.. ...
T Consensus 69 ~~~~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~ 145 (316)
T 3bg1_A 69 MYGNILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKI 145 (316)
T ss_dssp GGSSCEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCB
T ss_pred CCCCEEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeee
Confidence 4899999999999999999987532 23367899999999999998 66 799999999999999987642 345
Q ss_pred eccCCccEEEEeeeeeC---------------CceEEEEEecCCeEEEEECCCCC---ceEEecCCCCceEEEEEccCC-
Q 001386 481 FEGHGAPVYSLCPHAKE---------------NIHFIFSISVDGKIKAWLYDSLG---ARVDYDAPGLGCTRMAYSANG- 541 (1088)
Q Consensus 481 ~~~~~~~v~~~~~~~~~---------------~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~g- 541 (1088)
+.+|...|.+++|++.. ++.+|++|+.|+.|++||++... ....+..|...|.+++|+|++
T Consensus 146 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~ 225 (316)
T 3bg1_A 146 NNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG 225 (316)
T ss_dssp TTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS
T ss_pred eccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC
Confidence 67899999999997642 14689999999999999997553 455677888999999999987
Q ss_pred ---CEEEEEeeCCCCceeEEEEeCCCCc----eeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 001386 542 ---RRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1088)
Q Consensus 542 ---~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 608 (1088)
++|++++. ++.|++|++.+.. ....+..|. ..|.+++|+|++++|++++.|++|++|+..
T Consensus 226 ~~~~~las~s~----D~~v~iw~~~~~~~~~~~~~~~~~~~---~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 226 LPTSTIASCSQ----DGRVFIWTCDDASSNTWSPKLLHKFN---DVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CSCCEEEEEET----TCEEEEEECSSTTCCCCBCCEEEECS---SCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCCceEEEEcC----CCeEEEEEccCccccchhhhhhhcCC---CcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 78999875 5679999987631 223445555 889999999999999999999999999975
No 93
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3e-31 Score=295.10 Aligned_cols=286 Identities=9% Similarity=0.057 Sum_probs=242.3
Q ss_pred eecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
....+|.+.|++++|+|+|+ +|++|+.|+.|+|||+.+++..... ..+.+|...|.+++|+|+
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~~----------------~~~~~~~~~v~~~~~~~~ 67 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDL----------------LQSLRYKHPLLCCNFIDN 67 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEE----------------EEEEECSSCEEEEEEEES
T ss_pred ecccCCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccccc----------------eeeeecCCceEEEEECCC
Confidence 34568999999999999999 6899999999999999988722110 014469999999999999
Q ss_pred CC-EEEEEeCCCEEEEEEc-cCCCcccceeEecc--CCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC---------
Q 001386 408 GS-LLGVAYSKHIVQLYAY-HGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT--------- 474 (1088)
Q Consensus 408 g~-~las~~~dg~i~vwd~-~~~~~~~~~~~~~~--h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~--------- 474 (1088)
++ +|++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| ++ .+++++.|+.|++||+.+
T Consensus 68 ~~~~l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~ 140 (342)
T 1yfq_A 68 TDLQIYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVK 140 (342)
T ss_dssp SSEEEEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred CCcEEEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEccccccccccccc
Confidence 99 9999999999999999 87753 35778 999999999999 77 899999999999999988
Q ss_pred CceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCC-CC--ceEEecCCCCceEEEEEcc-CCCEEEEEeeC
Q 001386 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LG--ARVDYDAPGLGCTRMAYSA-NGRRLFSCGTS 550 (1088)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~--~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~ 550 (1088)
++++..+. |...|.+++|++ ++ +++++.||.|++||++. .. .......+...+.+++|+| +++++++++.
T Consensus 141 ~~~~~~~~-~~~~v~~~~~~~--~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~- 214 (342)
T 1yfq_A 141 NLNSNNTK-VKNKIFTMDTNS--SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI- 214 (342)
T ss_dssp ESCSSSSS-SCCCEEEEEECS--SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET-
T ss_pred CCeeeEEe-eCCceEEEEecC--Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec-
Confidence 77777777 889999999953 43 99999999999999988 44 3345556777899999999 9999999975
Q ss_pred CCCceeEEEEeCCCC------ceeEEEecccc------ccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeC
Q 001386 551 KEGESFLVEWNESEG------AIKRTYQGLQL------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1088)
Q Consensus 551 ~~~~~~i~iwd~~~~------~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1088)
++.|++|+.... +....+..|.. +...|.+++|+|++++|++++.||.|++||+.+++.+..+..
T Consensus 215 ---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 291 (342)
T 1yfq_A 215 ---DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK 291 (342)
T ss_dssp ---TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred ---CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhc
Confidence 556999999887 78888888751 124899999999999999999999999999999999988876
Q ss_pred C-CCCCCCceEEEecCCCEEEEEeCCCc-EEEEe
Q 001386 619 G-GGLPENPRICFNKNGTLLAVIANENR-IKILE 650 (1088)
Q Consensus 619 ~-~~~~~v~~v~~s~~~~~l~~~~~dg~-i~iwd 650 (1088)
+ .. .|.+++ |++++|++++.||. .+.+.
T Consensus 292 ~h~~--~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 292 FNED--SVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CSSS--EEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred ccCC--CceEec--CCCCeEEEEecCCccccccc
Confidence 5 43 578888 99999999999998 44444
No 94
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=9.8e-31 Score=300.99 Aligned_cols=278 Identities=21% Similarity=0.322 Sum_probs=240.5
Q ss_pred cccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCC
Q 001386 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1088)
Q Consensus 330 l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~ 409 (1088)
..+|...|.|++| ||+ ++++|+.||+|++||+.+++.+.. +.+|...|.+++| +++
T Consensus 129 ~~~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h~~~v~~l~~--~~~ 184 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DER 184 (435)
T ss_dssp CCSSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSS
T ss_pred ccCCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCCCCcEEEEEE--CCC
Confidence 3467778998887 677 689999999999999999987765 7789999999999 789
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee---EEeccCCc
Q 001386 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---YSFEGHGA 486 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~ 486 (1088)
+|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ . .+++|+.||.|++||+.+++.. ..+.+|..
T Consensus 185 ~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 257 (435)
T 1p22_A 185 VIITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 257 (435)
T ss_dssp EEEEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSS
T ss_pred EEEEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCC
Confidence 99999999999999999997655 6789999999999974 4 7999999999999999988766 67889999
Q ss_pred cEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCc
Q 001386 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1088)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1088)
.|.++++ ++.++++|+.||.|++||+++.+....+..+...+.++++ +++++++++. ++.|++||+.+++
T Consensus 258 ~v~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~~~ 327 (435)
T 1p22_A 258 AVNVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGA 327 (435)
T ss_dssp CEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTCC
T ss_pred cEEEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCCCC
Confidence 9999988 4569999999999999999999999999999999999988 5789999876 4569999999999
Q ss_pred eeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe---------eeEEEeCCCCCCCCceEEEecCCCEE
Q 001386 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---------LLTTIDAGGGLPENPRICFNKNGTLL 637 (1088)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~v~~s~~~~~l 637 (1088)
.+..+.+|. ..|.+++| ++.++++|+.||.|++||+.++. .+..+..|.. .|.+++| ++.+|
T Consensus 328 ~~~~~~~h~---~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~--~~~~l 398 (435)
T 1p22_A 328 CLRVLEGHE---ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--RVFRLQF--DEFQI 398 (435)
T ss_dssp EEEEECCCS---SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--CCCCEEE--CSSCE
T ss_pred EEEEEeCCc---CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCC--CeEEEEe--CCCEE
Confidence 999999888 88999988 78899999999999999997765 6777776644 6899999 78899
Q ss_pred EEEeCCCcEEEEeCCCCCcc
Q 001386 638 AVIANENRIKILETPESNSV 657 (1088)
Q Consensus 638 ~~~~~dg~i~iwd~~~~~~~ 657 (1088)
++++.||.|++||+.+....
T Consensus 399 ~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 399 VSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp EECCSSSEEEEEC-------
T ss_pred EEEeCCCEEEEEECCCCCCc
Confidence 99999999999999876443
No 95
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-30 Score=296.74 Aligned_cols=284 Identities=19% Similarity=0.260 Sum_probs=226.9
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCccccc
Q 001386 581 VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 660 (1088)
Q Consensus 581 v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 660 (1088)
+.++.|++ ..+++++.|+.|++||+.+++....+... +...|.+++|+|++++|++++.||.|++||+.+++.+..+
T Consensus 96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 172 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETD-ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTM 172 (401)
T ss_dssp CBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECC-TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred EEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecC-CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEe
Confidence 45566664 56888999999999999999988887763 3346999999999999999999999999998755322211
Q ss_pred ccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEE
Q 001386 661 GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRL 740 (1088)
Q Consensus 661 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~ 740 (1088)
.
T Consensus 173 ~------------------------------------------------------------------------------- 173 (401)
T 4aez_A 173 A------------------------------------------------------------------------------- 173 (401)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred EEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CC
Q 001386 741 TYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GG 819 (1088)
Q Consensus 741 ~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg 819 (1088)
+|...|.+++| ++.++++++ +|
T Consensus 174 -------------------------------------------------------~~~~~v~~~~~--~~~~l~~~~~dg 196 (401)
T 4aez_A 174 -------------------------------------------------------GHQARVGCLSW--NRHVLSSGSRSG 196 (401)
T ss_dssp -------------------------------------------------------CCSSCEEEEEE--ETTEEEEEETTS
T ss_pred -------------------------------------------------------CCCCceEEEEE--CCCEEEEEcCCC
Confidence 14555666666 445677776 77
Q ss_pred cEEEEEcC-CceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCC-CEE
Q 001386 820 VISLYIVM-TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL-NIL 897 (1088)
Q Consensus 820 ~i~iwd~~-~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg-~~l 897 (1088)
.|++||+. ....+..+.+|...|.+++|+| ++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++ .++
T Consensus 197 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll 275 (401)
T 4aez_A 197 AIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLL 275 (401)
T ss_dssp EEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEE
T ss_pred CEEEEecccCcceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEE
Confidence 88888887 4566778888999999999999 89999999999999999999999999999999999999999977 556
Q ss_pred EEEe--CCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE---eCCeEEEEEcCcceeeeee-ec
Q 001386 898 VSSG--GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQW-FP 971 (1088)
Q Consensus 898 as~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~---~d~~i~vwd~~~~~~~~~~-~~ 971 (1088)
++++ .|+.|++||+.+++... ..... ..|.+++|+|++++++++ .|+.|++||+.+++..... ..
T Consensus 276 ~~~~gs~d~~i~i~d~~~~~~~~-----~~~~~----~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~ 346 (401)
T 4aez_A 276 ATGGGTMDKQIHFWNAATGARVN-----TVDAG----SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIP 346 (401)
T ss_dssp EEECCTTTCEEEEEETTTCCEEE-----EEECS----SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEE
T ss_pred EEecCCCCCEEEEEECCCCCEEE-----EEeCC----CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEec
Confidence 6655 79999999999865332 22222 259999999999999994 4899999999987665543 46
Q ss_pred CCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001386 972 ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 972 ~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1013 (1088)
+|...|.+++|+|||++|++++.||.|++|++.+++.+....
T Consensus 347 ~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 347 AHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp CCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred CCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 899999999999999999999999999999999998876543
No 96
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=7.3e-31 Score=295.34 Aligned_cols=295 Identities=17% Similarity=0.200 Sum_probs=242.1
Q ss_pred CchhheeecccCCCCceeeeecCC---CCeEEEEEcccCcEEEEecCC-CcceeeeceeeeeeccccccceeeeecCCCC
Q 001386 322 FPKTVAQTLIEGSSSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1088)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~spd---g~~lla~g~~dg~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~ 397 (1088)
.|...++.+.+|.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ +..+.. .+.+|..
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h~~ 87 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMHTG 87 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEECSS
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------EeccccC
Confidence 355677889999999999999999 56 799999999999999998 443311 1667999
Q ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEe--cCCCCcEEEEEEeCCCcEEEEeCCCC
Q 001386 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF--SAPCKQISVITCGDDKTIKVWDAVTG 475 (1088)
Q Consensus 398 ~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~--s~d~~~l~l~s~s~d~~i~vwd~~~~ 475 (1088)
.|.+++|+|++++|++++.||.|++||+.+++.+. +.+|...|.+++| +++++ ++++++.|+.|++||+.++
T Consensus 88 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~ 161 (368)
T 3mmy_A 88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSS 161 (368)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCS
T ss_pred CEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCC
Confidence 99999999999999999999999999999886443 5679999999999 88888 8999999999999999999
Q ss_pred ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEec--CCCCceEEEEEccCCCE----EEEEee
Q 001386 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRR----LFSCGT 549 (1088)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~g~~----l~~~~~ 549 (1088)
+++..+..+. .+.++.+. . ..+++++.++.+++|+++......... .......++++.++... +++++.
T Consensus 162 ~~~~~~~~~~-~~~~~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (368)
T 3mmy_A 162 NPMMVLQLPE-RCYCADVI--Y--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI 236 (368)
T ss_dssp SCSEEEECSS-CEEEEEEE--T--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET
T ss_pred cEEEEEecCC-CceEEEec--C--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC
Confidence 9999998665 55556553 2 378999999999999998776544332 23445667777666554 888765
Q ss_pred CCCCceeEEEEeCCCC---ceeEEEeccccc---------cccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEe
Q 001386 550 SKEGESFLVEWNESEG---AIKRTYQGLQLQ---------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1088)
Q Consensus 550 ~~~~~~~i~iwd~~~~---~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1088)
++.|++||.... ..+..+.+|... ...|.+++|+|++++|++++.||.|++||+.+++++..+.
T Consensus 237 ----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (368)
T 3mmy_A 237 ----EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE 312 (368)
T ss_dssp ----TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred ----CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec
Confidence 566999999987 567777777610 1169999999999999999999999999999999999888
Q ss_pred CCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCC
Q 001386 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
.+.. .|.+++|+|++++|++++.|+..+.|+..
T Consensus 313 ~~~~--~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 313 QLDQ--PISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp CCSS--CEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred CCCC--CceEEEECCCCCeEEEEeccccccccccc
Confidence 6543 69999999999999999998765554433
No 97
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.5e-32 Score=304.05 Aligned_cols=241 Identities=13% Similarity=0.105 Sum_probs=198.7
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCC--CcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG--SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 394 ~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~--~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
.+.++|.+++|+|||++||+|+.|+.|++||+.++ +.+. .+.+|...|.+++|+|+++ +|++++.|++|++||
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR---TFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYVYE 83 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC---CBCCCSSCEEEEEECTTTC--CEEEEETTSSEEEC-
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE---EEecCCceEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence 36789999999999999999999999999999987 4444 6779999999999999999 799999999999999
Q ss_pred CCCCc---eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc---eEEecC-CCCceEEEEEccCCCEE
Q 001386 472 AVTGS---RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDA-PGLGCTRMAYSANGRRL 544 (1088)
Q Consensus 472 ~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~-~~~~v~~~~~s~~g~~l 544 (1088)
+.+++ ....+.+|...|.+++|++ ++.+|++++.||.|++||++..+. ...+.. |...|.+++|+|++++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 161 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLL 161 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEE
T ss_pred cCCCCceeeeeEecccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEE
Confidence 99987 6778889999999999955 678999999999999999998763 556666 88899999999999999
Q ss_pred EEEeeCCCCceeEEEEeCC------------------CCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001386 545 FSCGTSKEGESFLVEWNES------------------EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606 (1088)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd 606 (1088)
++++. ++.|++||+. .++.+..+ +|. ..|.+++|+|+++++++++.||.|++||
T Consensus 162 ~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~v~~~~~sp~~~~l~~~~~d~~i~iwd 233 (377)
T 3dwl_C 162 AAGCA----DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG---GWVHAVGFSPSGNALAYAGHDSSVTIAY 233 (377)
T ss_dssp EEEES----SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS---SSEEEEEECTTSSCEEEEETTTEEC-CE
T ss_pred EEEeC----CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC---ceEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 99986 4559999985 34455555 555 8999999999999999999999999999
Q ss_pred cCCCee----eEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCC
Q 001386 607 MNKVQL----LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 607 ~~~~~~----~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
+.+++. +..+..+.. .|.+++|+|++++|++++.++.+ +|+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 234 PSAPEQPPRALITVKLSQL--PLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp ECSTTSCEEECCCEECSSS--CEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCCCCCcceeeEeecCCCC--ceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 999887 666766543 68999999999999999877666 66655
No 98
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=1.1e-30 Score=297.45 Aligned_cols=297 Identities=13% Similarity=0.174 Sum_probs=242.4
Q ss_pred CCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-CCCEEEE
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGV 413 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~-dg~~las 413 (1088)
.....++++|+...++++|+.||.|+||++........ ....+.+|.+.|.+++|+| ++++||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s 99 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIAS 99 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEE
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEE
Confidence 35678999999876777789999999999966432210 1112678999999999999 9999999
Q ss_pred EeCCCEEEEEEccCCCcc----cceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe--ccCCcc
Q 001386 414 AYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--EGHGAP 487 (1088)
Q Consensus 414 ~~~dg~i~vwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~--~~~~~~ 487 (1088)
|+.||+|++||+.++... .....+.+|...|.+++|+|+++. ++++++.|+.|++||+.+++++..+ .+|...
T Consensus 100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178 (402)
T ss_dssp EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence 999999999999987432 234478899999999999999844 7999999999999999999999999 889999
Q ss_pred EEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEe-cCCCCc-eEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001386 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1088)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~-v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1088)
|.+++|++ ++.+|++++.||.|++||+++.+....+ ..+... +.+++|+|++++++++.. +..++.|++||+.++
T Consensus 179 v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 179 IYSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVALWDTKHL 255 (402)
T ss_dssp EEEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEEEETTBC
T ss_pred eEEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEEEcCccc
Confidence 99999955 7789999999999999999998888777 566654 899999999999988732 223778999999987
Q ss_pred ce-eEEEe-ccccccccEEEEEEeCCCCEEEE-EeCCCcEEEEEcCCCee-eEEEeCCCCCCCCceEEEecCCCEEEEEe
Q 001386 566 AI-KRTYQ-GLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL-LTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1088)
Q Consensus 566 ~~-~~~~~-~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1088)
.. +.... .+. ..+.+++|+|+++++++ ++.||.|++||+.+++. +..+..+.+...+.+++|+|++.++++
T Consensus 256 ~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s-- 330 (402)
T 2aq5_A 256 EEPLSLQELDTS---SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN-- 330 (402)
T ss_dssp SSCSEEEECCCC---SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--
T ss_pred cCCceEEeccCC---CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--
Confidence 64 33333 233 67999999999999975 55799999999999874 555554444457999999999988764
Q ss_pred CCCcEEEEeCCCCC
Q 001386 642 NENRIKILETPESN 655 (1088)
Q Consensus 642 ~dg~i~iwd~~~~~ 655 (1088)
.++.+++|++.++.
T Consensus 331 ~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 331 KCEIARFYKLHERK 344 (402)
T ss_dssp GTEEEEEEEEETTE
T ss_pred cceeEEEEEcCCCc
Confidence 56799999998653
No 99
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.98 E-value=4.6e-30 Score=293.71 Aligned_cols=281 Identities=19% Similarity=0.236 Sum_probs=242.2
Q ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc
Q 001386 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1088)
Q Consensus 397 ~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~ 476 (1088)
-..+.|+||++ +.||+|. |++|+|||+.+|+..+.. .+.+|...|++++|+|+|+ +|++|+.||+|++||+.+++
T Consensus 106 ~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~-~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~ 180 (420)
T 4gga_A 106 YYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQK 180 (420)
T ss_dssp TTCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTE
T ss_pred ccceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEE-EecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCc
Confidence 35678999985 4788775 899999999999866533 4668889999999999999 89999999999999999999
Q ss_pred eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc-eEEecCCCCceEEEEEccCCCEEEEEeeCCCCce
Q 001386 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1088)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 555 (1088)
++..+.+|...+.++++ ++.++++|+.|+.+++||...... ...+..|...+..+.++|+++++++++. ++
T Consensus 181 ~~~~~~~h~~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~----D~ 252 (420)
T 4gga_A 181 RLRNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DN 252 (420)
T ss_dssp EEEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TS
T ss_pred EEEEEeCCCCceEEEee----CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeec----cc
Confidence 99999999999999877 346999999999999999987554 4577889999999999999999999986 45
Q ss_pred eEEEEeCCCCce----eEEEeccccccccEEEEEEeCCCCEE-EE--EeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceE
Q 001386 556 FLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQI-LA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1088)
Q Consensus 556 ~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l-~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1088)
.+++|+..+++. +.....|. ..|.+++|+|++..+ ++ |+.|++|++||+.+++++..+..+. .+.++
T Consensus 253 ~v~i~~~~~~~~~~~~~~~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~---~v~~~ 326 (420)
T 4gga_A 253 LVNVWPSAPGEGGWVPLQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS---QVCSI 326 (420)
T ss_dssp CEEEEESSCCSSCSCCSEEECCCS---SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS---CEEEE
T ss_pred cceEEeeccccccceeeeeecccC---CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc---ceeee
Confidence 599999987653 45555555 899999999976544 44 3579999999999999999987654 47899
Q ss_pred EEecCCCEEEEEe--CCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCccccccc
Q 001386 629 CFNKNGTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 706 (1088)
Q Consensus 629 ~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 706 (1088)
.|+|+++.+++++ .|+.|+|||+.+++.+..+.+|...|.+++|+ |+|.++++++.
T Consensus 327 ~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~s----------------------pdg~~l~S~s~ 384 (420)
T 4gga_A 327 LWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS----------------------PDGATVASAAA 384 (420)
T ss_dssp EEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEET
T ss_pred eecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc----------------------CCCCEEEEEec
Confidence 9999999988876 68999999999999999999999999999998 67889999999
Q ss_pred Cccceecccccc
Q 001386 707 ENKSEVEKPLFA 718 (1088)
Q Consensus 707 d~~i~vw~~~~~ 718 (1088)
|++|++|++...
T Consensus 385 D~tvriWdv~~~ 396 (420)
T 4gga_A 385 DETLRLWRCFEL 396 (420)
T ss_dssp TTEEEEECCSCS
T ss_pred CCeEEEEECCCC
Confidence 999999997643
No 100
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.98 E-value=2e-31 Score=291.73 Aligned_cols=250 Identities=18% Similarity=0.323 Sum_probs=204.5
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCC--CCcEEEEEEeCCCcEE
Q 001386 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK 468 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~s~d~~i~ 468 (1088)
++.+|.+.|.+++|+|+|++||+|+.|++|+|||+.+++.. ....+.+|.+.|.+++|+++ ++ +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 36789999999999999999999999999999999887421 23468899999999999864 67 799999999999
Q ss_pred EEeCCCCc--eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc---eEEecCCCCceEEEEEccC---
Q 001386 469 VWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSAN--- 540 (1088)
Q Consensus 469 vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~--- 540 (1088)
+||+++++ .+..+.+|...|.+++|+|..++.+|++++.||.|++||++.... ...+..|...+.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 99999874 567788999999999998766678999999999999999987643 2345567778999999998
Q ss_pred --------------CCEEEEEeeCCCCceeEEEEeCCCC---ceeEEEeccccccccEEEEEEeCCC----CEEEEEeCC
Q 001386 541 --------------GRRLFSCGTSKEGESFLVEWNESEG---AIKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDD 599 (1088)
Q Consensus 541 --------------g~~l~~~~~~~~~~~~i~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~s~d 599 (1088)
+++|++++. ++.|++||...+ +.+..+.+|. ..|.+++|+|++ .+|++++.|
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~---~~V~~v~~sp~~~~~~~~las~s~D 237 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHS---DWVRDVAWAPSIGLPTSTIASCSQD 237 (316)
T ss_dssp ------CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCS---SCEEEEECCCCSSCSCCEEEEEETT
T ss_pred ccccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCC---CceEEEEecCCCCCCCceEEEEcCC
Confidence 468888765 566999999755 3556677776 899999999986 789999999
Q ss_pred CcEEEEEcCCC---e-eeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCC
Q 001386 600 HVIKIWDMNKV---Q-LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 600 g~i~iwd~~~~---~-~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
++|++|++.+. . ....+..+ ...|.+++|+|++++|++++.|++|++|+..
T Consensus 238 ~~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 238 GRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CEEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CeEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 99999998763 1 12233333 3468999999999999999999999999976
No 101
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=2e-30 Score=289.34 Aligned_cols=307 Identities=10% Similarity=0.112 Sum_probs=227.0
Q ss_pred eeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC
Q 001386 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1088)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~ 406 (1088)
.+.+.+|++.|++++|+|+|+ +||+|+.||.|+|||+.++...... ...+.+|...|.+++|+|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~---------------~~~~~~~~~~v~~~~~~~ 67 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWEL---------------SDSWRAHDSSIVAIDWAS 67 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEE---------------EEEEECCSSCEEEEEECC
T ss_pred cccCcccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCccee---------------cceeccCCCcEEEEEEcC
Confidence 356789999999999999999 7899999999999999987533211 112678999999999999
Q ss_pred --CCCEEEEEeCCCEEEEEEccCCCcc------cceeEeccCCCCEEEEEecCC--CCcEEEEEEeCCCcEEEEeCCCCc
Q 001386 407 --DGSLLGVAYSKHIVQLYAYHGGSDA------RQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS 476 (1088)
Q Consensus 407 --dg~~las~~~dg~i~vwd~~~~~~~------~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~s~d~~i~vwd~~~~~ 476 (1088)
|+++|++|+.||.|++||+.+++.. .....+.+|...|.+++|+|+ ++ ++++++.|+.|++||+.+++
T Consensus 68 ~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~ 145 (351)
T 3f3f_A 68 PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPS 145 (351)
T ss_dssp GGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTT
T ss_pred CCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChH
Confidence 6999999999999999999987431 334467899999999999999 88 89999999999999999887
Q ss_pred eeEEec-------------cCCccEEEEeeeee-CCceEEEEEecCCeEEEEECCCCCc--eEEecCCCCceEEEEEccC
Q 001386 477 RTYSFE-------------GHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSAN 540 (1088)
Q Consensus 477 ~~~~~~-------------~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~ 540 (1088)
.+..+. .|...+.+++|++. .++.++++++.|+.+.+|+...... ...+..|...|.+++|+|+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~ 225 (351)
T 3f3f_A 146 DLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPS 225 (351)
T ss_dssp CTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCC
T ss_pred HhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCC
Confidence 664443 57888999999764 1357999999999998888777665 5567778889999999999
Q ss_pred C----CEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEE----eCCCcEEEEEcCCCee
Q 001386 541 G----RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA----GDDHVIKIWDMNKVQL 612 (1088)
Q Consensus 541 g----~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----s~dg~i~iwd~~~~~~ 612 (1088)
+ ++|++++. ++.|++||+.++.......... .........+....+..+ .....+.+|+....+.
T Consensus 226 ~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (351)
T 3f3f_A 226 IGRWYQLIATGCK----DGRIRIFKITEKLSPLASEESL---TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVEL 298 (351)
T ss_dssp SSCSSEEEEEEET----TSCEEEEEEEECC------------------------------------------CCSEEEEE
T ss_pred CCCcceEEEEEcC----CCeEEEEeCCCCcCccccCCcc---cceeccCCCcccccccccccccccceeeeecccccccE
Confidence 8 78998876 5569999998776544433332 233333344443333333 3445566777777777
Q ss_pred eEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCccccc
Q 001386 613 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 660 (1088)
Q Consensus 613 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 660 (1088)
+..+..|.. .|.+++|+|++++|++++.||.|++|++.+++.+..+
T Consensus 299 ~~~~~~h~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 299 LSEHDDHNG--EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EEEECTTSS--CEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred EEEEecccc--cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 888876644 6999999999999999999999999999987655443
No 102
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=4e-30 Score=297.90 Aligned_cols=253 Identities=14% Similarity=0.227 Sum_probs=208.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCc--------ccceeEeccCC------------CCEEEEEecCCC-
Q 001386 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--------ARQQLEIDAHV------------GNVNDLAFSAPC- 453 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~--------~~~~~~~~~h~------------~~v~~~~~s~d~- 453 (1088)
|.+.|.+++|+|+|++||+|+.||.|+|||+.+++. ......+.+|. ..|++++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 678999999999999999999999999999998762 11244678998 889999999998
Q ss_pred -CcEEEEEEeCCCcEEEEeCCCCcee---------------------------------------EE-eccCCccEEEEe
Q 001386 454 -KQISVITCGDDKTIKVWDAVTGSRT---------------------------------------YS-FEGHGAPVYSLC 492 (1088)
Q Consensus 454 -~~l~l~s~s~d~~i~vwd~~~~~~~---------------------------------------~~-~~~~~~~v~~~~ 492 (1088)
. .+++++.|++|++||+.++... .. ..+|...|.+++
T Consensus 107 ~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 107 AA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp SS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred cc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 5 7899999999999998765432 12 367999999999
Q ss_pred eeeeCCceEEEEEecCCeEEEEECCCCCceEE--------ecCCCCceEEEEEccCC-CEEEEEeeCCCCceeEEEEeCC
Q 001386 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVD--------YDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNES 563 (1088)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------~~~~~~~v~~~~~s~~g-~~l~~~~~~~~~~~~i~iwd~~ 563 (1088)
|++ ++.+|++| .||.|++||++....... +..+...|.+++|+|++ ++|++++. ++.|++||++
T Consensus 185 ~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~~ 257 (447)
T 3dw8_B 185 INS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDMR 257 (447)
T ss_dssp ECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEETT
T ss_pred EcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEECc
Confidence 965 67899998 799999999985443332 55778899999999999 89999886 4569999999
Q ss_pred CCce----eEEEecccc---------ccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCC-CeeeEEEeCCCCCCC-----
Q 001386 564 EGAI----KRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPE----- 624 (1088)
Q Consensus 564 ~~~~----~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~----- 624 (1088)
+++. +..+.++.. +...|.+++|+|+++++++++. +.|++||+.+ ++++..+..+.....
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~ 336 (447)
T 3dw8_B 258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSL 336 (447)
T ss_dssp TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHH
T ss_pred CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccc
Confidence 9887 788887760 0128999999999999999999 9999999997 888888877643211
Q ss_pred --------CceEEEecCCCEEEEEeCCCcEEEEeCCCCCcc
Q 001386 625 --------NPRICFNKNGTLLAVIANENRIKILETPESNSV 657 (1088)
Q Consensus 625 --------v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 657 (1088)
+..++|+|++++|++++.||.|++||+.+++.+
T Consensus 337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 234999999999999999999999999988654
No 103
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=9.8e-29 Score=271.62 Aligned_cols=283 Identities=16% Similarity=0.211 Sum_probs=229.7
Q ss_pred EEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEE
Q 001386 737 ISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA 816 (1088)
Q Consensus 737 i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 816 (1088)
.+.++||+++ +++.+.|++|++||+..+ .++...... +|...|.+++|+|+++++++|
T Consensus 28 ~~~l~WS~~~--~lAvg~D~tV~iWd~~tg------------------~~~~~~~~~--~~~~~V~~v~~~~~~~~l~sg 85 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVALDNSVYLWSASSG------------------DILQLLQME--QPGEYISSVAWIKEGNYLAVG 85 (318)
T ss_dssp CBCEEECTTS--EEEEEETTEEEEEETTTC------------------CEEEEEECC--STTCCEEEEEECTTSSEEEEE
T ss_pred ceEEEECCCC--EEEEEeCCEEEEEECCCC------------------CEEEEEEec--CCCCeEEEEEECCCCCEEEEE
Confidence 4678999886 445567999999986543 334443332 488899999999999999999
Q ss_pred e-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc-eeeeeeccccCCeeEEEECCCC
Q 001386 817 S-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDAL 894 (1088)
Q Consensus 817 ~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~-~~~~~l~~h~~~V~~l~~s~dg 894 (1088)
+ |++|++||+.+++.+..+.+|...+.++.+. +.++++|+.++.+++|+..++ ..+..+.+|...+..+.+++++
T Consensus 86 s~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (318)
T 4ggc_A 86 TSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG 162 (318)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred ECCCcEEEeecCCceeEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC
Confidence 8 8999999999999999999999988877664 469999999999999999875 4567889999999999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-E---eCCeEEEEEcCcceeeeeee
Q 001386 895 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V---HETHLAIYEAEELTCLKQWF 970 (1088)
Q Consensus 895 ~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~---~d~~i~vwd~~~~~~~~~~~ 970 (1088)
++|++++.||+|++||+.+++........ ...+. ..|.+++++|++..++. + .++.|++||..........
T Consensus 163 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~- 237 (318)
T 4ggc_A 163 RHLASGGNDNLVNVWPSAPGEGGWVPLQT-FTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV- 237 (318)
T ss_dssp SEEEEEETTSCEEEEESSCBTTBSCCSEE-ECCCC---SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-
T ss_pred CEEEEEecCcceeEEECCCCcccccceee-ecccC---CceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-
Confidence 99999999999999999986533222211 12222 36899999998775553 2 4678999999988876653
Q ss_pred cCCCcCEEEEEEeeCCCEEEEEe--CCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCC
Q 001386 971 PISSVPISQATFSCDCRMVFTSF--VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN 1048 (1088)
Q Consensus 971 ~~h~~~v~~l~fs~dg~~l~s~s--~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~d 1048 (1088)
.+...+..++|++++..+++++ .|+.|++||+.+++++..+..+ .-...+++|+| |+.+|++|+.|
T Consensus 238 -~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH----------~~~V~~l~~sp-dg~~l~S~s~D 305 (318)
T 4ggc_A 238 -DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH----------TSRVLSLTMSP-DGATVASAAAD 305 (318)
T ss_dssp -ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC----------SSCEEEEEECT-TSSCEEEEETT
T ss_pred -cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC----------CCCEEEEEEcC-CCCEEEEEecC
Confidence 4578899999999999988765 7999999999999999887621 13457799999 89999999999
Q ss_pred CcEEEEeCCCCCC
Q 001386 1049 GEVYVIEPNEPGD 1061 (1088)
Q Consensus 1049 g~v~~w~l~~~~~ 1061 (1088)
|+|++||+.+.+|
T Consensus 306 ~~v~iWd~~~~dP 318 (318)
T 4ggc_A 306 ETLRLWRCFELDP 318 (318)
T ss_dssp TEEEEECCSCCCC
T ss_pred CeEEEEECCCCCC
Confidence 9999999977653
No 104
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.1e-30 Score=288.13 Aligned_cols=261 Identities=13% Similarity=0.152 Sum_probs=216.2
Q ss_pred hheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCC--cceeeeceeeeeeccccccceeeeecCCCCCeEEE
Q 001386 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1088)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 402 (1088)
.+++++.+|.+.|++++|+|+|+ +||+|+.||.|+|||+..+ +.+.. +.+|...|.++
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~ 61 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLIDT-------------------LTGHEGPVWRV 61 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEE-------------------ECCCSSCEEEE
T ss_pred CccEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceeeeE-------------------ecCCCCcEEEE
Confidence 35678899999999999999999 6899999999999999843 33322 77899999999
Q ss_pred EECCC--CCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCC--CCcEEEEEEeCCCcEEEEeCCCCc--
Q 001386 403 VWSPD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS-- 476 (1088)
Q Consensus 403 ~~s~d--g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~s~d~~i~vwd~~~~~-- 476 (1088)
+|+|+ +++|++++.||.|++||+.+++. .....+.+|...|.+++|+|+ +. ++++++.|+.|++||+.++.
T Consensus 62 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~ 138 (379)
T 3jrp_A 62 DWAHPKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTT 138 (379)
T ss_dssp EECCGGGCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCC
T ss_pred EeCCCCCCCEEEEeccCCEEEEEEcCCCce-eEeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCce
Confidence 99987 99999999999999999998752 123367789999999999999 88 89999999999999999874
Q ss_pred eeEEeccCCccEEEEeeeeeC-----------CceEEEEEecCCeEEEEECCCCCc----eEEecCCCCceEEEEEccC-
Q 001386 477 RTYSFEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSAN- 540 (1088)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~- 540 (1088)
....+.+|...|.+++|++.. ++.++++++.||.|++||++.... ...+..|...|.+++|+|+
T Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~ 218 (379)
T 3jrp_A 139 SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 218 (379)
T ss_dssp CEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC
T ss_pred eeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCC
Confidence 345677899999999997642 578999999999999999987654 3466778889999999999
Q ss_pred --CCEEEEEeeCCCCceeEEEEeCCCCce--eEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCee
Q 001386 541 --GRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612 (1088)
Q Consensus 541 --g~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 612 (1088)
+++|++++. ++.|++||+.++.. .........+...+.+++|+|++++|++++.||.|++|++..+..
T Consensus 219 ~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 219 LLRSYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp SSSEEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred CCCCeEEEEeC----CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCc
Confidence 899999876 45599999998742 122222222348899999999999999999999999999975443
No 105
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=1.7e-29 Score=290.54 Aligned_cols=274 Identities=16% Similarity=0.243 Sum_probs=237.5
Q ss_pred cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeC
Q 001386 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1088)
Q Consensus 393 ~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~ 472 (1088)
.+|...|.+++| |+++|++|+.||.|++||+.+++... .+.+|...|.+++| +++ ++++|+.||+|++||+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence 347788998887 79999999999999999999987655 68899999999999 677 8999999999999999
Q ss_pred CCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCce---EEecCCCCceEEEEEccCCCEEEEEee
Q 001386 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1088)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~s~~g~~l~~~~~ 549 (1088)
.+++++..+.+|...|.+++++ +.++++++.||.|++||+++.... ..+..+...|.+++| +++++++++.
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFN----NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECC----TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcEEEEEcCCCCcEEEEEEc----CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 9999999999999999999984 348999999999999999987765 567788889999998 7889999875
Q ss_pred CCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEE
Q 001386 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1088)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1088)
++.|++||+.+++.+..+.+|. ..+.++.++ ++++++|+.||.|++||+.+++.+..+..+.. .|.+++
T Consensus 275 ----dg~i~vwd~~~~~~~~~~~~~~---~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~ 343 (435)
T 1p22_A 275 ----DRTIKVWNTSTCEFVRTLNGHK---RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIR 343 (435)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCS---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEE
T ss_pred ----CCeEEEEECCcCcEEEEEcCCC---CcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC--cEEEEE
Confidence 5669999999999999999888 889999884 68999999999999999999999999986644 588888
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCC---------cccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCc
Q 001386 630 FNKNGTLLAVIANENRIKILETPESN---------SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP 700 (1088)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1088)
| ++.++++|+.||.|++||+.++. .+..+.+|...|.++++. +..
T Consensus 344 ~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~------------------------~~~ 397 (435)
T 1p22_A 344 F--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD------------------------EFQ 397 (435)
T ss_dssp C--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC------------------------SSC
T ss_pred e--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeC------------------------CCE
Confidence 8 78899999999999999987665 566677777777776663 677
Q ss_pred ccccccCccceecccccc
Q 001386 701 EISVEAENKSEVEKPLFA 718 (1088)
Q Consensus 701 l~~~~~d~~i~vw~~~~~ 718 (1088)
+++++.|++|++|++...
T Consensus 398 l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 398 IVSSSHDDTILIWDFLND 415 (435)
T ss_dssp EEECCSSSEEEEEC----
T ss_pred EEEEeCCCEEEEEECCCC
Confidence 999999999999997643
No 106
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-29 Score=286.68 Aligned_cols=254 Identities=17% Similarity=0.304 Sum_probs=216.4
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCC--CCcEEEEEEeCCCcEEE
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 469 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~s~d~~i~v 469 (1088)
+.+|...|.+++|+|++++||+|+.||.|++||+..+. ......+.+|...|++++|+++ ++ +|++++.||.|++
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~i 83 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI 83 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEEE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEEE
Confidence 77899999999999999999999999999999998432 1233468899999999999987 77 8999999999999
Q ss_pred EeCCCCc--eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCC--ceEEecCCCCceEEEEEcc------
Q 001386 470 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA------ 539 (1088)
Q Consensus 470 wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~------ 539 (1088)
||+.+++ .+..+.+|...|.+++|++..++.++++++.||.|++||++... ....+..+...|.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 9999997 77888899999999999776437899999999999999998874 4456678888999999999
Q ss_pred -------CCCEEEEEeeCCCCceeEEEEeCCCCc----eeEEEeccccccccEEEEEEeCC---CCEEEEEeCCCcEEEE
Q 001386 540 -------NGRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKIW 605 (1088)
Q Consensus 540 -------~g~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~s~dg~i~iw 605 (1088)
++.++++++. ++.|++||+.++. ....+.+|. ..|.+++|+|+ +.++++++.||.|++|
T Consensus 164 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~---~~v~~~~~sp~~~~~~~l~s~~~dg~i~iw 236 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236 (379)
T ss_dssp ------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred ccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEeccc---CcEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence 6999999986 4459999998765 445566666 89999999999 8999999999999999
Q ss_pred EcCCCe---eeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 606 DMNKVQ---LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1088)
Q Consensus 606 d~~~~~---~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 655 (1088)
|+.++. ....+....+...+.+++|+|++++|++++.||.|++|++....
T Consensus 237 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 237 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred eCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 998864 22333333344568999999999999999999999999998553
No 107
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=1e-28 Score=277.75 Aligned_cols=290 Identities=17% Similarity=0.152 Sum_probs=238.5
Q ss_pred ecCCCCCeEEEEECCC---CCEEEEEeCCCEEEEEEccC-CCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcE
Q 001386 392 VRDPGVSVNRVVWSPD---GSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~d---g~~las~~~dg~i~vwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i 467 (1088)
+.+|.+.|.+++|+|+ |++|++|+.||.|++||+.+ +..+ ...+.+|...|.+++|+|+++ +|++++.||.|
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~v 110 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI--PKAQQMHTGPVLDVCWSDDGS--KVFTASCDKTA 110 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE--EEEEEECSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee--EEEeccccCCEEEEEECcCCC--EEEEEcCCCcE
Confidence 7789999999999999 69999999999999999998 4332 135778999999999999999 89999999999
Q ss_pred EEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001386 468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1088)
Q Consensus 468 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 547 (1088)
++||+.+++.+. +.+|...|.+++|.+.+++.+|++++.||.|++||+++.+....+..+. .+.++.+.+ ..++++
T Consensus 111 ~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~ 186 (368)
T 3mmy_A 111 KMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVVA 186 (368)
T ss_dssp EEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEEE
T ss_pred EEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEEE
Confidence 999999998776 5569999999999878888999999999999999999988877777654 555555554 466666
Q ss_pred eeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCE----EEEEeCCCcEEEEEcCCC---eeeEEEeCCC
Q 001386 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ----ILAAGDDHVIKIWDMNKV---QLLTTIDAGG 620 (1088)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----l~~~s~dg~i~iwd~~~~---~~~~~~~~~~ 620 (1088)
+. ++.+.+|+.............. ....+.++.+.++... +++++.||.|++|++... ..+..+..+.
T Consensus 187 ~~----~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 261 (368)
T 3mmy_A 187 TA----ERGLIVYQLENQPSEFRRIESP-LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHR 261 (368)
T ss_dssp EG----GGCEEEEECSSSCEEEEECCCS-CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSE
T ss_pred eC----CCcEEEEEeccccchhhhcccc-ccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeee
Confidence 65 4559999998765443322211 2355667777666554 999999999999999987 5566666553
Q ss_pred CC----------CCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceee
Q 001386 621 GL----------PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 690 (1088)
Q Consensus 621 ~~----------~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~ 690 (1088)
.. ..|.+++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+
T Consensus 262 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s----------------- 324 (368)
T 3mmy_A 262 SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFN----------------- 324 (368)
T ss_dssp EC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEEC-----------------
T ss_pred cccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEEC-----------------
Confidence 21 148999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCcccccccCccceecccc
Q 001386 691 NEDPKEDVKPEISVEAENKSEVEKPL 716 (1088)
Q Consensus 691 ~~~~~~~~~~l~~~~~d~~i~vw~~~ 716 (1088)
|+++++++++.|+..+.|+..
T Consensus 325 -----~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 325 -----HNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp -----TTSSCEEEEECCCSTTCGGGC
T ss_pred -----CCCCeEEEEeccccccccccc
Confidence 678889999888877777744
No 108
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=4.3e-29 Score=277.69 Aligned_cols=285 Identities=10% Similarity=-0.001 Sum_probs=239.1
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
..+|.+.|.+++|+|++++|++++.|+.|++||+.+++.......+.+|...|.+++|+|+++. ++++++.||.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence 4579999999999999999999999999999999988733333356689999999999999872 378899999999999
Q ss_pred C-CCCceeEEecc--CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCC---------CCceEEecCCCCceEEEEEcc
Q 001386 472 A-VTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS---------LGARVDYDAPGLGCTRMAYSA 539 (1088)
Q Consensus 472 ~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~s~ 539 (1088)
+ .+++. ..+.+ |...|.+++|++ +.++++++.||.|++||+++ .+....+. +...+.+++|+|
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred eccCCce-EeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 9 77755 77888 999999999976 57999999999999999987 55555554 777899999999
Q ss_pred CCCEEEEEeeCCCCceeEEEEeCCC-Cce--eEEEeccccccccEEEEEEeC-CCCEEEEEeCCCcEEEEEcCCC-----
Q 001386 540 NGRRLFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKV----- 610 (1088)
Q Consensus 540 ~g~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~----- 610 (1088)
++ +++++. ++.|++||+.+ +.. ......+. ..+.+++|+| +++++++++.||.|++|++...
T Consensus 161 ~~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~---~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 161 SR--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLK---YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp SE--EEEEES----TTEEEEEESSCCTTCCCEEEECSCS---SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred Cc--EEEEeC----CCeEEEEECCccccccceeeecCCC---CceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence 88 777764 55699999998 553 23333444 7899999999 9999999999999999999887
Q ss_pred -eeeEEEeCCCC-------CCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccc-cCcceeeeecCCCcceec
Q 001386 611 -QLLTTIDAGGG-------LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGA 681 (1088)
Q Consensus 611 -~~~~~~~~~~~-------~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~~ 681 (1088)
+....+..+.. ...|.+++|+|++++|++++.||.|++||+.+++.+..+..| ...|.+++ |
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~------- 302 (342)
T 1yfq_A 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C------- 302 (342)
T ss_dssp CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E-------
T ss_pred cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C-------
Confidence 77778876643 236899999999999999999999999999999988888887 88887776 3
Q ss_pred cccCCceeecCCCCCCCCcccccccCcc-ceeccc
Q 001386 682 GIANGSVSVNEDPKEDVKPEISVEAENK-SEVEKP 715 (1088)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~vw~~ 715 (1088)
++.++++++.|++ .+.+..
T Consensus 303 ---------------~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 303 ---------------SDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp ---------------CSSEEEEEEECTHHHHCSSS
T ss_pred ---------------CCCeEEEEecCCcccccccc
Confidence 5778899999998 766664
No 109
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2e-28 Score=282.96 Aligned_cols=300 Identities=12% Similarity=0.011 Sum_probs=234.6
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCc---ceeeeceeeeeeccc-----------------------------
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ---KLFIRNFKVWDIGAC----------------------------- 383 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~---~~~~~~~~~~d~~~~----------------------------- 383 (1088)
++.+++|+|||+ +|+++ .++.|++||+.+|+ .+.. |.....
T Consensus 6 p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (450)
T 2vdu_B 6 PLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGK-----WSDDFDKIQESRNTTAKEQQGQSSENENENKKLKS 78 (450)
T ss_dssp CCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEE-----EECCC------------------------------
T ss_pred cEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeee-----cCCccccccccccccchhhcccccccccccccccc
Confidence 899999999999 56655 46899999999998 4432 221100
Q ss_pred -----------cccceeeeecCCCCCeEEEEECCCCCEE-EEEeCCCEEEEEEcc--CCCcccceeEeccCCCCEEEEEe
Q 001386 384 -----------SMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYH--GGSDARQQLEIDAHVGNVNDLAF 449 (1088)
Q Consensus 384 -----------~~~~~~~~~~~h~~~V~~l~~s~dg~~l-as~~~dg~i~vwd~~--~~~~~~~~~~~~~h~~~v~~~~~ 449 (1088)
..........+|.+.|.+++|+|||++| |+++.||.|++||+. +++.+..+. ...|...|.+++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~ 157 (450)
T 2vdu_B 79 NKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAISI 157 (450)
T ss_dssp ---------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEEE
T ss_pred CcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEEE
Confidence 0000111234677789999999999996 889999999999999 777655321 1367789999999
Q ss_pred cCCCCcEEEEEEeCCCcEEEEeCCCCceeE----EeccCCccEEEEeeeee-CCceEEEEEecCCeEEEEECCCCCceEE
Q 001386 450 SAPCKQISVITCGDDKTIKVWDAVTGSRTY----SFEGHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGARVD 524 (1088)
Q Consensus 450 s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~----~~~~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 524 (1088)
+|+++ +|++++.|+.|++|++.+++... .+.+|...|.+++|+++ ..+.+|++++.|+.|++||+++......
T Consensus 158 sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 235 (450)
T 2vdu_B 158 AEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK 235 (450)
T ss_dssp CTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE
T ss_pred cCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee
Confidence 99999 89999999999999999887554 77889999999999764 2278999999999999999998887776
Q ss_pred -ecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccc----------------------cccccE
Q 001386 525 -YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ----------------------LQHNSV 581 (1088)
Q Consensus 525 -~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~----------------------~~~~~v 581 (1088)
...|...|.+++|+ ++++|++++. ++.|++||+.+++.+..+..+. .....+
T Consensus 236 ~~~~h~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 310 (450)
T 2vdu_B 236 WLFGHKHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAV 310 (450)
T ss_dssp ECCCCSSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCE
T ss_pred eecCCCCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEE
Confidence 55788899999999 9999999985 5679999999999988886431 123568
Q ss_pred EEEEEeCCCCEEEEEe-CCCcEEEEEc--CCC---eeeEEEeCCCCCCCCceEEEecCCCEEEEEeC------CCcEEEE
Q 001386 582 SVVHFDTAKDQILAAG-DDHVIKIWDM--NKV---QLLTTIDAGGGLPENPRICFNKNGTLLAVIAN------ENRIKIL 649 (1088)
Q Consensus 582 ~~~~~~~~~~~l~~~s-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~------dg~i~iw 649 (1088)
..++|+|+++++++++ .++.|++|++ .++ +.+..+..+ ..+.+++|+|++.++++++. +..|.+|
T Consensus 311 ~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 311 SKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp EEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEEE
Confidence 9999999999999998 8999999999 565 666777665 35899999996544443332 4557888
Q ss_pred eCCC
Q 001386 650 ETPE 653 (1088)
Q Consensus 650 d~~~ 653 (1088)
.+..
T Consensus 388 ~~~~ 391 (450)
T 2vdu_B 388 EYNL 391 (450)
T ss_dssp EEET
T ss_pred EEEc
Confidence 7653
No 110
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=5.2e-29 Score=277.84 Aligned_cols=296 Identities=11% Similarity=0.122 Sum_probs=221.2
Q ss_pred eeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcc-cceeEeccCCCCEEEEEecC--CCCcEEEEEEeCCCc
Q 001386 390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKT 466 (1088)
Q Consensus 390 ~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~--d~~~l~l~s~s~d~~ 466 (1088)
.++.+|.+.|++++|+|++++||+|+.||.|++||+.++... .....+.+|...|.+++|+| |++ +|++++.|+.
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~ 82 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKT 82 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSC
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCe
Confidence 347899999999999999999999999999999999976432 33446789999999999999 577 8999999999
Q ss_pred EEEEeCCCC---------ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEec-----------
Q 001386 467 IKVWDAVTG---------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD----------- 526 (1088)
Q Consensus 467 i~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------- 526 (1088)
|++||+.++ +.+..+.+|...|.+++|++..++.++++++.||.|++||+++.+....+.
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 162 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 162 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence 999999987 557888899999999999765337899999999999999998776543222
Q ss_pred --CCCCceEEEEEccC---CCEEEEEeeCCCCceeEEEEeCCCCce--eEEEeccccccccEEEEEEeCCC----CEEEE
Q 001386 527 --APGLGCTRMAYSAN---GRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAK----DQILA 595 (1088)
Q Consensus 527 --~~~~~v~~~~~s~~---g~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~----~~l~~ 595 (1088)
.+...+.+++|+|+ +..+++++. ++.+.+|+...+.. +..+.+|. ..|.+++|+|++ +++++
T Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~---~~i~~~~~~p~~~~~~~~l~s 235 (351)
T 3f3f_A 163 PANHLQSDFCLSWCPSRFSPEKLAVSAL----EQAIIYQRGKDGKLHVAAKLPGHK---SLIRSISWAPSIGRWYQLIAT 235 (351)
T ss_dssp CSSCSCCCEEEEECCCSSSCCEEEEEET----TEEEEEEECTTSCEEEEEECCCCC---SCEEEEEECCCSSCSSEEEEE
T ss_pred cCCcccceeEEEeccCCCCCcEEEEecC----CCcEEEEccCCCceeeeeecCCCC---cceeEEEECCCCCCcceEEEE
Confidence 45668999999997 899999875 55677787777765 55666666 899999999998 89999
Q ss_pred EeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEe----CCCcEEEEeCCCCCcccccccccCcceeee
Q 001386 596 AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA----NENRIKILETPESNSVDAAGVLSDNLRKLS 671 (1088)
Q Consensus 596 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 671 (1088)
++.||.|++||+.++......... .........++....++.+. ....+.+|+....+.+..+.+|...|.+++
T Consensus 236 ~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 313 (351)
T 3f3f_A 236 GCKDGRIRIFKITEKLSPLASEES--LTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVS 313 (351)
T ss_dssp EETTSCEEEEEEEECC-----------------------------------------CCSEEEEEEEEECTTSSCEEEEE
T ss_pred EcCCCeEEEEeCCCCcCccccCCc--ccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEE
Confidence 999999999999876554433222 11223333344433333332 344556666666677778888999999999
Q ss_pred ecCCCcceeccccCCceeecCCCCCCCCcccccccCccceecccccc
Q 001386 672 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 718 (1088)
Q Consensus 672 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 718 (1088)
|+ ++++++++++.|+.|++|++...
T Consensus 314 ~s----------------------~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 314 WN----------------------LTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp EC----------------------SSSCCEEEEETTSCEEEEEECTT
T ss_pred Ec----------------------CCCCEEEEecCCCcEEEEecCcC
Confidence 98 57889999999999999998743
No 111
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=7e-29 Score=276.08 Aligned_cols=283 Identities=13% Similarity=0.120 Sum_probs=216.5
Q ss_pred heeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEEC
Q 001386 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1088)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1088)
.++++.+|.+.|++++|||||+ +||+|+.++ ++|||+.+++..... +...+..++++
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~~---------------------~~~~~~~~~~~ 67 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMSQ---------------------EMRHLSKVRML 67 (355)
T ss_dssp --------CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEEE---------------------ECSCCCEEEEC
T ss_pred CccccccCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeeee---------------------ecCCeEEEEEc
Confidence 3456689999999999999999 789988765 789999887655421 22258889999
Q ss_pred CCCCEEE-EEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-ceeEEecc
Q 001386 406 PDGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG 483 (1088)
Q Consensus 406 ~dg~~la-s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~-~~~~~~~~ 483 (1088)
++++.++ +++.|++|++||+.+++.+. .+. |...|.+++|+++. ++.+ .|+.|++||+.++ +.+..+..
T Consensus 68 ~~~~~~~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~-~~~~i~i~d~~~~~~~~~~~~~ 138 (355)
T 3vu4_A 68 HRTNYVAFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVS-YGDVISVFKFGNPWKRITDDIR 138 (355)
T ss_dssp TTSSEEEEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEE-ETTEEEEEESSTTCCBSSCCEE
T ss_pred CCCCEEEEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEE-EcCEEEEEECCCCceeeEEecc
Confidence 9988885 56778999999999987665 343 66799999999864 3333 3789999999998 77766665
Q ss_pred CCccEEEEeeeeeCCceEEEE--EecCCeEEEEECCCCC----------------ceEEecCCCCceEEEEEccCCCEEE
Q 001386 484 HGAPVYSLCPHAKENIHFIFS--ISVDGKIKAWLYDSLG----------------ARVDYDAPGLGCTRMAYSANGRRLF 545 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~----------------~~~~~~~~~~~v~~~~~s~~g~~l~ 545 (1088)
+...+++++ .+++. |+.||.|++||+.+.. ....+..|...|.+++|+|+|++|+
T Consensus 139 ---~~~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~ 211 (355)
T 3vu4_A 139 ---FGGVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVA 211 (355)
T ss_dssp ---EEEEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEE
T ss_pred ---CCceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEE
Confidence 333444433 34555 6899999999998765 2567888999999999999999999
Q ss_pred EEeeCCCCcee-EEEEeCCCCceeEEEe-c-cccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeE--E-----
Q 001386 546 SCGTSKEGESF-LVEWNESEGAIKRTYQ-G-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--T----- 615 (1088)
Q Consensus 546 ~~~~~~~~~~~-i~iwd~~~~~~~~~~~-~-~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~----- 615 (1088)
+++. ++. |++||+.+++.+..+. + |. ..|.+++|+|++++|++++.|++|++||+..+.... .
T Consensus 212 s~s~----d~~~v~iwd~~~~~~~~~~~~g~h~---~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~ 284 (355)
T 3vu4_A 212 TCSQ----DGTIIRVFKTEDGVLVREFRRGLDR---ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWI 284 (355)
T ss_dssp EEET----TCSEEEEEETTTCCEEEEEECTTCC---SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTE
T ss_pred EEeC----CCCEEEEEECCCCcEEEEEEcCCCC---CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccccee
Confidence 9985 676 9999999999999998 5 66 899999999999999999999999999997653211 1
Q ss_pred -------------EeCC-CCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 001386 616 -------------IDAG-GGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 616 -------------~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
+... ........++|+++++.+++++.||.+++|++..+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 285 NMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp ECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred eccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 0010 11122467999999999999999999999998754
No 112
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.4e-27 Score=271.02 Aligned_cols=279 Identities=11% Similarity=0.102 Sum_probs=227.4
Q ss_pred eEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEE-EEEeCCCEEEEEEcc
Q 001386 348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYH 426 (1088)
Q Consensus 348 ~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l-as~~~dg~i~vwd~~ 426 (1088)
+++++++.|+.|++||+.+++.+.. +.+| ..+.+++|+|||++| ++++.|+.|++||+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~ 62 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTAT-------------------IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEE-------------------EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEE-------------------eecC-CCcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence 5889999999999999999987754 3334 458999999999987 566689999999999
Q ss_pred CCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEE-EEE
Q 001386 427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSI 505 (1088)
Q Consensus 427 ~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~ 505 (1088)
+++.+. .+..+. .+.+++|+|+++. ++++++.++.|++||+.+++.+..+..+ ..+.+++|+ ++++.+ +++
T Consensus 63 ~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s--~dg~~l~~~~ 134 (391)
T 1l0q_A 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALS--PDGKKLYVTN 134 (391)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEEC--TTSSEEEEEE
T ss_pred CCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEEC--CCCCEEEEEe
Confidence 987654 444444 8999999999994 3456667899999999999998888754 467888885 466666 788
Q ss_pred ecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEE
Q 001386 506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 585 (1088)
Q Consensus 506 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 585 (1088)
+.|+.|++||+.+.+....+..+ ..+.+++|+|+++++++++. .++.|++||+.+++.+..+..+ ..+.+++
T Consensus 135 ~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~----~~~~~~~ 206 (391)
T 1l0q_A 135 NGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVE----AAPSGIA 206 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECS----SEEEEEE
T ss_pred CCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecC----CCccceE
Confidence 88999999999988777766654 45689999999999865542 2567999999999888777643 4789999
Q ss_pred EeCCCCEEEEEe---CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEE-EEEeCCCcEEEEeCCCCCcccccc
Q 001386 586 FDTAKDQILAAG---DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAG 661 (1088)
Q Consensus 586 ~~~~~~~l~~~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~ 661 (1088)
|+|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+.
T Consensus 207 ~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 207 VNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA 283 (391)
T ss_dssp ECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence 999999999988 68999999999999998887654 36889999999877 566789999999999987776665
Q ss_pred cccC
Q 001386 662 VLSD 665 (1088)
Q Consensus 662 ~~~~ 665 (1088)
.+..
T Consensus 284 ~~~~ 287 (391)
T 1l0q_A 284 VGKN 287 (391)
T ss_dssp CSSS
T ss_pred CCcC
Confidence 5443
No 113
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=1.1e-27 Score=250.40 Aligned_cols=293 Identities=14% Similarity=0.125 Sum_probs=207.2
Q ss_pred EEEEEe-cCCCCcEEEEEEeCCCcEEEEeCCCC---ceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCC
Q 001386 444 VNDLAF-SAPCKQISVITCGDDKTIKVWDAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL 519 (1088)
Q Consensus 444 v~~~~~-s~d~~~l~l~s~s~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 519 (1088)
+.++-| .++.+.+.+++++ ...|++|+..++ ++++++.+|..+|..+.+.|+..+-.-++-+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------- 107 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------------- 107 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC-------------
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec-------------
Confidence 555556 3455555777777 568999999999 8899999999999999987644322211111
Q ss_pred CceEEecCCCCceEEEEEccC----CCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEE
Q 001386 520 GARVDYDAPGLGCTRMAYSAN----GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 595 (1088)
Q Consensus 520 ~~~~~~~~~~~~v~~~~~s~~----g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 595 (1088)
..+...|.+++++|| ++.+++++. .+.+|++. +++.+.+
T Consensus 108 ------~~~~~~v~sla~spd~~~~~~~l~s~g~------~~~v~~l~-------------------------~g~lv~s 150 (356)
T 2w18_A 108 ------NLEIREIRALFCSSDDESEKQVLLKSGN------IKAVLGLT-------------------------KRRLVSS 150 (356)
T ss_dssp ------SSSEEEEEEECC------CCEEEEEEEE------EEEEEEET-------------------------TTEEEEE
T ss_pred ------cccccceEEEEECCCccccccEEEeCCC------eEEEEecC-------------------------CCcEEEe
Confidence 223447889999999 999998753 25566543 3333333
Q ss_pred Ee--CCCcEEEEEc-CCCeeeEEEeCCCCCCCCceEEEec---CCCEEEEEeCCCcEEEEeCCCCCcccccccccCccee
Q 001386 596 AG--DDHVIKIWDM-NKVQLLTTIDAGGGLPENPRICFNK---NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRK 669 (1088)
Q Consensus 596 ~s--~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 669 (1088)
++ .|+.|++|++ .+|+.+..+..+.. .+..++|++ ++.+|++++.|++|+|||+.+++.+.++.++..
T Consensus 151 s~~g~d~~V~~~~~s~dG~~~~s~~~~~~--~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~---- 224 (356)
T 2w18_A 151 SGTLSDQQVEVMTFAEDGGGKENQFLMPP--EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDS---- 224 (356)
T ss_dssp ESSSTTCEEEEEEECTTSCEEEEEEECCC--SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC-----
T ss_pred cccCCCCcEEEEEECCCCceeeeeccCCC--ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCc----
Confidence 22 4778888888 44777777776654 578899999 789999999999999999999987776653221
Q ss_pred eeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceE
Q 001386 670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 749 (1088)
Q Consensus 670 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 749 (1088)
+...+.+++|+|+|..+
T Consensus 225 ---------------------------------------------------------------~v~~v~~vafSpdG~~l 241 (356)
T 2w18_A 225 ---------------------------------------------------------------YQASVCHKAYSEMGLLF 241 (356)
T ss_dssp -----------------------------------------------------------------CCCEEEEEEETTEEE
T ss_pred ---------------------------------------------------------------ceeeeEEEEECCCCCEE
Confidence 12356678899999887
Q ss_pred EEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCC
Q 001386 750 FALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMT 828 (1088)
Q Consensus 750 ~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~ 828 (1088)
++++.+.. +| .+++|+ |++|++||..+
T Consensus 242 vs~s~~~~--~w--------------------------------------------------~laSGs~D~tIklWd~~t 269 (356)
T 2w18_A 242 IVLSHPCA--KE--------------------------------------------------SESLRSPVFQLIVINPKT 269 (356)
T ss_dssp EEEC----------------------------------------------------------------CCEEEEEEETTT
T ss_pred EEeccCCC--cc--------------------------------------------------eeeccCCCcEEEEEECCC
Confidence 77664311 11 356676 88999999999
Q ss_pred ceeEEEe-----cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCee-EEEECCCCCEEEEEeC
Q 001386 829 FKTILTI-----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT-GLVFSDALNILVSSGG 902 (1088)
Q Consensus 829 ~~~~~~~-----~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~-~l~~s~dg~~las~s~ 902 (1088)
++.+..+ .+|...+.+..+ ++.++|+|+.||+|+|||+.+++++.++.+|...+. +++|||||++|++|+.
T Consensus 270 gk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~ 346 (356)
T 2w18_A 270 TLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQK 346 (356)
T ss_dssp TEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECT
T ss_pred CEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEEC
Confidence 9887765 356555544444 367999999999999999999999999999988765 5899999999999999
Q ss_pred CCcEEEEEc
Q 001386 903 DAQIFVWDV 911 (1088)
Q Consensus 903 Dg~i~iwd~ 911 (1088)
|++|+|||+
T Consensus 347 D~TIklWd~ 355 (356)
T 2w18_A 347 DGNIFVYHY 355 (356)
T ss_dssp TSCEEEEEE
T ss_pred CCcEEEecC
Confidence 999999996
No 114
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=6e-27 Score=265.74 Aligned_cols=328 Identities=11% Similarity=0.112 Sum_probs=253.8
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEE-EEEecCCeEEEEECCCCCceEEecCCCCceEEE
Q 001386 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1088)
Q Consensus 457 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 535 (1088)
++++++.|+.|++||+.+++++..+..|. .+.+++|+ +++.++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s--~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVIS--PDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEEC--TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEEC--CCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 78899999999999999999999988765 47888885 466665 677799999999999888777776655 89999
Q ss_pred EEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEE-EEEeCCCcEEEEEcCCCeeeE
Q 001386 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLT 614 (1088)
Q Consensus 536 ~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~~~~~~~ 614 (1088)
+|+|++++|++++. .++.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||+.+++.+.
T Consensus 80 ~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 152 (391)
T 1l0q_A 80 AVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTGK----SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN 152 (391)
T ss_dssp EECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS----SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeCCC----CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 99999999877653 24679999999999888877644 68999999999988 677889999999999999998
Q ss_pred EEeCCCCCCCCceEEEecCCCEE-EEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCC
Q 001386 615 TIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED 693 (1088)
Q Consensus 615 ~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~ 693 (1088)
.+..+. .+.+++|+|+++.+ ++++.++.|++||+.+++....+.
T Consensus 153 ~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-------------------------------- 197 (391)
T 1l0q_A 153 TVSVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-------------------------------- 197 (391)
T ss_dssp EEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--------------------------------
T ss_pred EEecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe--------------------------------
Confidence 887653 36899999999887 566778999999987542111000
Q ss_pred CCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCC
Q 001386 694 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 773 (1088)
Q Consensus 694 ~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~ 773 (1088)
T Consensus 198 -------------------------------------------------------------------------------- 197 (391)
T 1l0q_A 198 -------------------------------------------------------------------------------- 197 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe----CCcEEEEEcCCceeEEEecCCCCCeEEEEEcC
Q 001386 774 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----GGVISLYIVMTFKTILTIMPPSPTATSLAFNP 849 (1088)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~----dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp 849 (1088)
+...+.+++|+|+++++++++ ++.|++||+.+++.+..+..+. .+.+++|+|
T Consensus 198 -----------------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~ 253 (391)
T 1l0q_A 198 -----------------------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTP 253 (391)
T ss_dssp -----------------------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECT
T ss_pred -----------------------cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEcc
Confidence 223455677788887777664 5789999999998888887654 578999999
Q ss_pred CCCcEE-EEEeCCCeEEEEEcCCceeeeeeccccCCee---EEEECCCC----------------------CEEEEEeCC
Q 001386 850 HDNNVI-AIGMDDSTILIYNARSSEVISKLEGHSKRVT---GLVFSDAL----------------------NILVSSGGD 903 (1088)
Q Consensus 850 ~d~~~l-asg~~dg~i~lwd~~~~~~~~~l~~h~~~V~---~l~~s~dg----------------------~~las~s~D 903 (1088)
++++| ++++.|+.|++||+.+++.+..+..|..+.. .+.+.|++ ..+...+.|
T Consensus 254 -dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~ 332 (391)
T 1l0q_A 254 -DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKD 332 (391)
T ss_dssp -TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBS
T ss_pred -CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCC
Confidence 67666 6778899999999999999988877765432 12333211 235556678
Q ss_pred CcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE
Q 001386 904 AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 949 (1088)
Q Consensus 904 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~ 949 (1088)
.++++|++..+.... . .-....|+++|.+.+.
T Consensus 333 ~~~~~W~~~~g~~~~------~--------~~~~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 333 ATEWKWDFGDGSSSK------K--------QNPTHTYSETGIYTVR 364 (391)
T ss_dssp CSEEEEECSSSCEEC------S--------SSCEECCSSCEEEEEE
T ss_pred ceEEEEECCCCcccC------c--------CCCeEEeCCCceEEEE
Confidence 899999998765211 0 1124679999998876
No 115
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.2e-29 Score=305.84 Aligned_cols=258 Identities=13% Similarity=0.146 Sum_probs=212.1
Q ss_pred eeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCC--cceeeeceeeeeeccccccceeeeecCCCCCeEEEEE
Q 001386 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1088)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1088)
..++.+|.+.|++++|+|+|+ ++++|+.||+|+|||+.++ +.+.. +.+|.+.|.+++|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~~~~~~~-------------------l~~h~~~V~~l~~ 61 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLIDT-------------------LTGHEGPVWRVDW 61 (753)
T ss_dssp ------CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTEEEEEEE-------------------ECCCSSCEEEEEE
T ss_pred eeecccCcceeEEEEECCCCC-eEEEEECCCcEEEEecCCCCCcccee-------------------ccCCcCceEEEEe
Confidence 467889999999999999999 6899999999999999844 33322 7789999999999
Q ss_pred CCC--CCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCC--CCcEEEEEEeCCCcEEEEeCCCCc--ee
Q 001386 405 SPD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--RT 478 (1088)
Q Consensus 405 s~d--g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~s~d~~i~vwd~~~~~--~~ 478 (1088)
+|+ +++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+ ++ .+++|+.||.|++||+.++. ..
T Consensus 62 s~~~~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~ 138 (753)
T 3jro_A 62 AHPKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSP 138 (753)
T ss_dssp CCTTSCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCC
T ss_pred cCCCCCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcce
Confidence 998 99999999999999999998752 233367889999999999999 88 89999999999999998873 44
Q ss_pred EEeccCCccEEEEeeeeeC-----------CceEEEEEecCCeEEEEECCCCC----ceEEecCCCCceEEEEEccC---
Q 001386 479 YSFEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSAN--- 540 (1088)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~--- 540 (1088)
..+.+|...|.+++|++.. ++.++++|+.||.|++||+++.. ....+..|...|.+++|+|+
T Consensus 139 ~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 218 (753)
T 3jro_A 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218 (753)
T ss_dssp EEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred eEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCC
Confidence 6778899999999997642 57899999999999999998774 34466788899999999999
Q ss_pred CCEEEEEeeCCCCceeEEEEeCCCCcee--EEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe
Q 001386 541 GRRLFSCGTSKEGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1088)
Q Consensus 541 g~~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1088)
++++++++. ++.|++||+.++... ........+...|.+++|+|+++++++++.||.|++|++.++.
T Consensus 219 ~~~l~s~s~----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 219 RSYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SEEEEEEES----SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred CCEEEEEec----CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 899999986 455999999886421 1122222234789999999999999999999999999998644
No 116
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=6e-28 Score=274.70 Aligned_cols=285 Identities=13% Similarity=0.139 Sum_probs=232.3
Q ss_pred CCeEEEEECCCCCEEE-EEeCCCEEEEEEccCC-CcccceeEeccCCCCEEEEEecC-CCCcEEEEEEeCCCcEEEEeCC
Q 001386 397 VSVNRVVWSPDGSLLG-VAYSKHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAV 473 (1088)
Q Consensus 397 ~~V~~l~~s~dg~~la-s~~~dg~i~vwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~s~d~~i~vwd~~ 473 (1088)
.....++++|+...++ +++.||.|+||++... +.......+.+|.+.|++++|+| +++ +|++|+.||+|++||+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIP 112 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECC
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEcc
Confidence 4455689998776554 5788999999999654 22233445789999999999999 787 89999999999999999
Q ss_pred CC-------ceeEEeccCCccEEEEeeeeeCCc-eEEEEEecCCeEEEEECCCCCceEEe--cCCCCceEEEEEccCCCE
Q 001386 474 TG-------SRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANGRR 543 (1088)
Q Consensus 474 ~~-------~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~~g~~ 543 (1088)
++ +++..+.+|...|.+++|++ ++ .+|++++.||.|++||+++.+....+ ..+...|.+++|+|++++
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 190 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHP--TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL 190 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECS--SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSC
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECc--CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCE
Confidence 88 67889999999999999965 44 59999999999999999999888888 788899999999999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCceeEEE-eccccccccEEEEEEeCCCCEEEEE---eCCCcEEEEEcCCCee-eEEEeC
Q 001386 544 LFSCGTSKEGESFLVEWNESEGAIKRTY-QGLQLQHNSVSVVHFDTAKDQILAA---GDDHVIKIWDMNKVQL-LTTIDA 618 (1088)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~---s~dg~i~iwd~~~~~~-~~~~~~ 618 (1088)
|++++. ++.|++||+++++.+..+ .+|. ...+.++.|+|++.++++| +.|+.|++||+.+++. +.....
T Consensus 191 l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~ 264 (402)
T 2aq5_A 191 ICTSCR----DKRVRVIEPRKGTVVAEKDRPHE--GTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL 264 (402)
T ss_dssp EEEEET----TSEEEEEETTTTEEEEEEECSSC--SSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC
T ss_pred EEEEec----CCcEEEEeCCCCceeeeeccCCC--CCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec
Confidence 999975 566999999999999888 6766 2348999999999999998 7999999999998765 333332
Q ss_pred CCCCCCCceEEEecCCCEEEE-EeCCCcEEEEeCCCCCc-cccccc--ccCcceeeeecCCCcceeccccCCceeecCCC
Q 001386 619 GGGLPENPRICFNKNGTLLAV-IANENRIKILETPESNS-VDAAGV--LSDNLRKLSVNPISTVTGAGIANGSVSVNEDP 694 (1088)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~--~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~ 694 (1088)
.+...+.+++|+|+++++++ ++.||.|++|++.+++. +..+.. +...+.+++|+
T Consensus 265 -~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~s--------------------- 322 (402)
T 2aq5_A 265 -DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYM--------------------- 322 (402)
T ss_dssp -CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEEC---------------------
T ss_pred -cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEe---------------------
Confidence 22345899999999999975 45799999999998874 444444 44788888887
Q ss_pred CCCCCcccccccCccceecccc
Q 001386 695 KEDVKPEISVEAENKSEVEKPL 716 (1088)
Q Consensus 695 ~~~~~~l~~~~~d~~i~vw~~~ 716 (1088)
|++.++++ .++.+++|++.
T Consensus 323 -p~~~~~~s--~~~~~~~~~l~ 341 (402)
T 2aq5_A 323 -PKRGLEVN--KCEIARFYKLH 341 (402)
T ss_dssp -CGGGSCGG--GTEEEEEEEEE
T ss_pred -ccccccee--cceeEEEEEcC
Confidence 45666654 45589999975
No 117
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=9.3e-28 Score=267.02 Aligned_cols=293 Identities=10% Similarity=0.098 Sum_probs=209.6
Q ss_pred EEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEE-
Q 001386 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL- 637 (1088)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l- 637 (1088)
+|++.+...+.....|. ..|.+++|+|+|+++++|+.++ +++|++.+++.......+ .+..+++.++++.+
T Consensus 3 i~s~~~~~~~~~~~~h~---~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 74 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVS---NPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR----HLSKVRMLHRTNYVA 74 (355)
T ss_dssp ----------------C---CCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS----CCCEEEECTTSSEEE
T ss_pred cccccccCCccccccCC---CceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC----CeEEEEEcCCCCEEE
Confidence 35556666666667776 8999999999999999988775 789999988777665433 36789999988887
Q ss_pred EEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccc
Q 001386 638 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1088)
Q Consensus 638 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 717 (1088)
++++.|++|++||..+++.+..+.
T Consensus 75 ~~~~~d~~v~iWd~~~~~~~~~~~-------------------------------------------------------- 98 (355)
T 3vu4_A 75 FVTGVKEVVHIWDDVKKQDVSRIK-------------------------------------------------------- 98 (355)
T ss_dssp EECSSTTEEEEEETTTTEEEEEEE--------------------------------------------------------
T ss_pred EEECCccEEEEEECCCCcEEEEEE--------------------------------------------------------
Confidence 456778999999998775443222
Q ss_pred cCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCC-CCCCCCCCCCcccCCCCCCcceeeccCCCC
Q 001386 718 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN-DLTLSTEVPPRLYQPRHGPQFMVNDTTDSN 796 (1088)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1088)
+...|.++.++++.. ++ ..++.+++|++... .. +...
T Consensus 99 ---------------~~~~v~~v~~~~~~~--~~-~~~~~i~i~d~~~~~~~------------------~~~~------ 136 (355)
T 3vu4_A 99 ---------------VDAPVKDLFLSREFI--VV-SYGDVISVFKFGNPWKR------------------ITDD------ 136 (355)
T ss_dssp ---------------CSSCEEEEEECSSEE--EE-EETTEEEEEESSTTCCB------------------SSCC------
T ss_pred ---------------CCCceEEEEEcCCEE--EE-EEcCEEEEEECCCCcee------------------eEEe------
Confidence 233567777776642 22 34778999987654 21 1110
Q ss_pred CCCCeeEEEEecCCCEEEEE--e-CCcEEEEEcCCce----------------eEEEecCCCCCeEEEEEcCCCCcEEEE
Q 001386 797 SQEAVPCFALSKNDAYLFSA--S-GGVISLYIVMTFK----------------TILTIMPPSPTATSLAFNPHDNNVIAI 857 (1088)
Q Consensus 797 ~~~~v~~~~~s~dg~~l~~~--~-dg~i~iwd~~~~~----------------~~~~~~~~~~~i~~l~~sp~d~~~las 857 (1088)
......+++++ .+++++ + +|.|++||+.+++ .+..+.+|...|++++|+| ++++||+
T Consensus 137 -~~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s 212 (355)
T 3vu4_A 137 -IRFGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVAT 212 (355)
T ss_dssp -EEEEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEEEE
T ss_pred -ccCCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEE
Confidence 01344566777 667764 3 8999999999865 2678899999999999999 8999999
Q ss_pred EeCCCe-EEEEEcCCceeeeeec-c-ccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec----------
Q 001386 858 GMDDST-ILIYNARSSEVISKLE-G-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT---------- 924 (1088)
Q Consensus 858 g~~dg~-i~lwd~~~~~~~~~l~-~-h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~---------- 924 (1088)
|+.||+ |+|||+.+++++..+. + |.+.|.+++|+|||++|++++.|++|++||+..+.......+..
T Consensus 213 ~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (355)
T 3vu4_A 213 CSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSE 292 (355)
T ss_dssp EETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCS
T ss_pred EeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccc
Confidence 999998 9999999999999998 6 99999999999999999999999999999998754222111111
Q ss_pred --------CCCCccCCCCeEEEEEcCCCCEEEEE-eCCeEEEEEcCcce
Q 001386 925 --------PDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELT 964 (1088)
Q Consensus 925 --------~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~vwd~~~~~ 964 (1088)
.... ......++|++||++|+++ .||.+++|++..++
T Consensus 293 ~~~~~~~~~~~~---~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 293 WSLCNFKLSVDK---HVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp SCSEEEECCCCT---TCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred cceeEEEeccCC---CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 1110 1134679999999999995 78999999977544
No 118
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=2.8e-27 Score=272.55 Aligned_cols=300 Identities=11% Similarity=0.039 Sum_probs=232.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCccccee--EeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001386 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL--EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1088)
Q Consensus 397 ~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~--~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~ 474 (1088)
..+.+++|+|++.++++++.++.|++||+.+++...... .+.+|...|.+++|+++++ ++++++.|+.|++||+.+
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~~ 200 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE--LWVSQMQANAVHVFDLKT 200 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE--EEEEEGGGTEEEEEETTT
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE--EEEEECCCCEEEEEECCC
Confidence 456699999988888888888999999999987654211 3458899999999999998 899999999999999999
Q ss_pred CceeEEeccCCccEEEEeeeeeCCceEE-EEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCC-
Q 001386 475 GSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE- 552 (1088)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~- 552 (1088)
++.+..+..|...+.+++|++ ++..+ ++++.|+.|++||+++.+....+.. ...+.+++|+|+|+++++++....
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~ 277 (433)
T 3bws_A 201 LAYKATVDLTGKWSKILLYDP--IRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASN 277 (433)
T ss_dssp CCEEEEEECSSSSEEEEEEET--TTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCT
T ss_pred ceEEEEEcCCCCCeeEEEEcC--CCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCc
Confidence 999999999999999999954 55566 5555899999999998777666554 346899999999999998875332
Q ss_pred ---CceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEE-EEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceE
Q 001386 553 ---GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1088)
Q Consensus 553 ---~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1088)
.++.|++||+.+++.+..+. +. ..+..++|+|+++.+ ++++.++.|++||+.+++.+..+... ..+.++
T Consensus 278 ~~~~dg~i~~~d~~~~~~~~~~~-~~---~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~---~~~~~~ 350 (433)
T 3bws_A 278 QESGGGRLGIYSMDKEKLIDTIG-PP---GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVF---DKPNTI 350 (433)
T ss_dssp TCSCCEEEEEEETTTTEEEEEEE-EE---ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECS---SSEEEE
T ss_pred cccCCCeEEEEECCCCcEEeecc-CC---CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCC---CCCCeE
Confidence 36789999999998776653 33 478899999999866 45689999999999999988888643 247899
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCc
Q 001386 629 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708 (1088)
Q Consensus 629 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 708 (1088)
+|+|+++++++++.+.. .....++++++.||
T Consensus 351 ~~s~dg~~l~~~~~~~~-------------------------------------------------~~~~~~~~~g~~dg 381 (433)
T 3bws_A 351 ALSPDGKYLYVSCRGPN-------------------------------------------------HPTEGYLKKGLVLG 381 (433)
T ss_dssp EECTTSSEEEEEECCCC-------------------------------------------------CTTTCTTSCCSSCC
T ss_pred EEcCCCCEEEEEecCCC-------------------------------------------------ccccccccccccce
Confidence 99999999888876321 01123455566666
Q ss_pred cceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEecc-ccceEEEEcc
Q 001386 709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS-NGVHLMWRWP 764 (1088)
Q Consensus 709 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-dg~v~iw~~~ 764 (1088)
.+.+|+....+.. ..+ + ....+.+++|+|+|+.+++++. ++.+++|+++
T Consensus 382 ~v~~~d~~~~~~~--~~~--~---~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 382 KVYVIDTTTDTVK--EFW--E---AGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEEETTTTEEE--EEE--E---CSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEEEEECCCCcEE--EEe--c---CCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 6666665432111 111 1 2346889999999999988775 9999999864
No 119
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.2e-27 Score=250.22 Aligned_cols=270 Identities=11% Similarity=0.058 Sum_probs=200.2
Q ss_pred EEEEEeCCCcEEEEeCCCC---CcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCcccee
Q 001386 636 LLAVIANENRIKILETPES---NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1088)
Q Consensus 636 ~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v 712 (1088)
.+++++. ..|++|+...+ +.+.+..++..+|..+.+.|.-.. ++..
T Consensus 56 ~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------------------~~~~-------- 104 (356)
T 2w18_A 56 CIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYN----------------------LVCV-------- 104 (356)
T ss_dssp EEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCS----------------------CEEE--------
T ss_pred EEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccc----------------------eeee--------
Confidence 5666665 59999999998 778888889989988888753211 1110
Q ss_pred ccccccCCCcceeeecCCccccccEEEEEEecC----CceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcce
Q 001386 713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNG----GQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFM 788 (1088)
Q Consensus 713 w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~----g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1088)
.+ ...+...|..++++|+ ++.++.++.+ +++|.+
T Consensus 105 --------------~~-~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l------------------------- 142 (356)
T 2w18_A 105 --------------AL-GNLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL------------------------- 142 (356)
T ss_dssp --------------EE-CSSSEEEEEEECC------CCEEEEEEEEE--EEEEEE-------------------------
T ss_pred --------------ee-ccccccceEEEEECCCccccccEEEeCCCe--EEEEec-------------------------
Confidence 00 0125578999999999 9988887744 556642
Q ss_pred eeccCCCCCCCCeeEEEEecCCCEEEEEe---CCcEEEEEc-CCceeEEEecCCCCCeEEEEEcC--CCCcEEEEEeCCC
Q 001386 789 VNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIV-MTFKTILTIMPPSPTATSLAFNP--HDNNVIAIGMDDS 862 (1088)
Q Consensus 789 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~---dg~i~iwd~-~~~~~~~~~~~~~~~i~~l~~sp--~d~~~lasg~~dg 862 (1088)
++|+++.++. ++.|++|++ .+++.+..+..|...++.++|++ .++.+||+|+.|+
T Consensus 143 -------------------~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~ 203 (356)
T 2w18_A 143 -------------------TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMN 203 (356)
T ss_dssp -------------------TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTS
T ss_pred -------------------CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCC
Confidence 3556666653 788999999 45888888888888888888887 4578999999999
Q ss_pred eEEEEEcCCceeeeeecccc---CCeeEEEECCCCCEE------------EEEeCCCcEEEEEcCCCceeeeeeeecCCC
Q 001386 863 TILIYNARSSEVISKLEGHS---KRVTGLVFSDALNIL------------VSSGGDAQIFVWDVDGWGIQTCRSLQTPDG 927 (1088)
Q Consensus 863 ~i~lwd~~~~~~~~~l~~h~---~~V~~l~~s~dg~~l------------as~s~Dg~i~iwd~~~~~~~~~~~~~~~~~ 927 (1088)
+|+|||+.+|+++.++.+|. ..+.+++|||||.++ ++|+.|++|++||..+++......+..+.+
T Consensus 204 TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~G 283 (356)
T 2w18_A 204 NIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPG 283 (356)
T ss_dssp EEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTT
T ss_pred cEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCC
Confidence 99999999999999998754 367788999999886 668899999999999977544333333455
Q ss_pred CccCCCCeEEEEEcCCCCEEEEE-eCCeEEEEEcCcceeeeeeecCCCcCE-EEEEEeeCCCEEEEEeCCCcEEEEEc
Q 001386 928 VMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPI-SQATFSCDCRMVFTSFVDGTLSIHEA 1003 (1088)
Q Consensus 928 ~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v-~~l~fs~dg~~l~s~s~dg~v~vwd~ 1003 (1088)
|.. .+.+..+ ++.++|++ .|++|+|||+.+++++..+ .+|...+ ..++|||||++|++|+.|++|+|||+
T Consensus 284 h~~---~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL-~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 284 QAG---RFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALL-PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCC---CEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEE-CCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred Ccc---eeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEe-cCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 543 2333333 48888884 6999999999999999884 4676654 46899999999999999999999995
No 120
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.5e-28 Score=301.77 Aligned_cols=254 Identities=17% Similarity=0.299 Sum_probs=214.5
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCC--CCcEEEEEEeCCCcEEE
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 469 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~s~d~~i~v 469 (1088)
+.+|.+.|++++|+|+|++|++|+.||.|+|||+.++.. .....+.+|.+.|++++|+|+ ++ ++++|+.||.|++
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~v 81 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI 81 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEEE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEEE
Confidence 778999999999999999999999999999999985432 334478899999999999988 77 8999999999999
Q ss_pred EeCCCCc--eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCC--ceEEecCCCCceEEEEEcc------
Q 001386 470 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA------ 539 (1088)
Q Consensus 470 wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~------ 539 (1088)
||+.+++ .+..+.+|...|.+++|++..++.++++|+.||.|++||++... ....+..+...|.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 9999987 77888899999999999776447899999999999999998873 3456677888999999999
Q ss_pred -------CCCEEEEEeeCCCCceeEEEEeCCCC----ceeEEEeccccccccEEEEEEeCC---CCEEEEEeCCCcEEEE
Q 001386 540 -------NGRRLFSCGTSKEGESFLVEWNESEG----AIKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKIW 605 (1088)
Q Consensus 540 -------~g~~l~~~~~~~~~~~~i~iwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~s~dg~i~iw 605 (1088)
++..+++++. ++.|++||+.++ .....+.+|. ..|.+++|+|+ ++++++++.||.|++|
T Consensus 162 ~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~---~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iw 234 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234 (753)
T ss_dssp -----CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEESSSCEEEE
T ss_pred cccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCC---CcEEEEEeccCCCCCCEEEEEecCCEEEEe
Confidence 5899999986 455999999877 4556667776 89999999999 8999999999999999
Q ss_pred EcCCCeee---EEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 606 DMNKVQLL---TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1088)
Q Consensus 606 d~~~~~~~---~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 655 (1088)
|+.+++.. .......+...|.+++|+|+|+++++++.||.|++|++..+.
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred cCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 99886421 112222334568999999999999999999999999998654
No 121
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=9.7e-28 Score=275.03 Aligned_cols=265 Identities=15% Similarity=0.222 Sum_probs=214.0
Q ss_pred eecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
..+.+|.+.|++++|+|++..++|+|+.||.|+|||+.+....... .........+.+|...|.+++|+|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~---------~~~~~~~~~~~~h~~~v~~l~~~~~ 192 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP---------SGECQPDLRLRGHQKEGYGLSWNPN 192 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT---------TCCCCCSEEEECCSSCCCCEEECTT
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc---------cccCCCcEEecCCCCCeEEEEeCCC
Confidence 4556899999999999985558999999999999999862110000 0000011126789999999999999
Q ss_pred CC-EEEEEeCCCEEEEEEccCCCcc----cceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC---ceeE
Q 001386 408 GS-LLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTY 479 (1088)
Q Consensus 408 g~-~las~~~dg~i~vwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~---~~~~ 479 (1088)
+. +|++|+.||.|++||+.++... .....+.+|...|.+++|+|++.. ++++++.|+.|++||++++ +.+.
T Consensus 193 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~~ 271 (430)
T 2xyi_A 193 LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPSH 271 (430)
T ss_dssp STTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCSE
T ss_pred CCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCccee
Confidence 98 9999999999999999985432 223467799999999999995444 8999999999999999987 5778
Q ss_pred EeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCC-CCceEEecCCCCceEEEEEccCCC-EEEEEeeCCCCceeE
Q 001386 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFL 557 (1088)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~~~~~~~~i 557 (1088)
.+..|...|++++|++.. ..++++|+.||.|++||++. ......+..|...|.+++|+|+++ ++++++. ++.|
T Consensus 272 ~~~~~~~~v~~i~~~p~~-~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~----d~~i 346 (430)
T 2xyi_A 272 TVDAHTAEVNCLSFNPYS-EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT----DRRL 346 (430)
T ss_dssp EEECCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET----TSCC
T ss_pred EeecCCCCeEEEEeCCCC-CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC----CCcE
Confidence 888999999999996642 23799999999999999998 455777888999999999999996 5677664 4569
Q ss_pred EEEeCCC--------------CceeEEEeccccccccEEEEEEeCCCC-EEEEEeCCCcEEEEEcCCC
Q 001386 558 VEWNESE--------------GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKV 610 (1088)
Q Consensus 558 ~iwd~~~--------------~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~ 610 (1088)
++||+.. .+.+..+.+|. ..|.+++|+|+++ .+++++.||.|++|++...
T Consensus 347 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 347 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT---AKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEEEGGGTTCCCCHHHHHHCCTTEEEECCCCS---SCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEeCCCCccccCccccccCCcceEEEcCCCC---CCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 9999987 35566666666 8899999999999 8999999999999998753
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=3.2e-27 Score=272.13 Aligned_cols=293 Identities=10% Similarity=0.071 Sum_probs=239.1
Q ss_pred heeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEEC
Q 001386 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1088)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1088)
.+..+..+. .+.+++|+|++. ++++++.++.|++||+.+++.+.... ...+.+|...|.+++|+
T Consensus 115 ~~~~~~~~~-~~~~~~~s~~~~-~~~~~~~~~~i~~~d~~~g~~~~~~~--------------~~~~~~~~~~v~~~~~~ 178 (433)
T 3bws_A 115 FISRFKTGF-QPKSVRFIDNTR-LAIPLLEDEGMDVLDINSGQTVRLSP--------------PEKYKKKLGFVETISIP 178 (433)
T ss_dssp EEEEEECSS-CBCCCEESSSSE-EEEEBTTSSSEEEEETTTCCEEEECC--------------CHHHHTTCCEEEEEEEG
T ss_pred EEEEEcCCC-CceEEEEeCCCe-EEEEeCCCCeEEEEECCCCeEeeecC--------------cccccccCCceeEEEEc
Confidence 344555554 677999999665 88999999999999999998765311 11256799999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCC
Q 001386 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1088)
Q Consensus 406 ~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 485 (1088)
|+++++++++.|+.|++||+.+++.+. .+..|...+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..+
T Consensus 179 ~~~~~~~s~~~d~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~- 253 (433)
T 3bws_A 179 EHNELWVSQMQANAVHVFDLKTLAYKA---TVDLTGKWSKILLYDPIRDL-VYCSNWISEDISVIDRKTKLEIRKTDKI- 253 (433)
T ss_dssp GGTEEEEEEGGGTEEEEEETTTCCEEE---EEECSSSSEEEEEEETTTTE-EEEEETTTTEEEEEETTTTEEEEECCCC-
T ss_pred CCCEEEEEECCCCEEEEEECCCceEEE---EEcCCCCCeeEEEEcCCCCE-EEEEecCCCcEEEEECCCCcEEEEecCC-
Confidence 999999999999999999999887655 56689999999999999994 3456668999999999999998888754
Q ss_pred ccEEEEeeeeeCCceEEEEEe--------cCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeE
Q 001386 486 APVYSLCPHAKENIHFIFSIS--------VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1088)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~--------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i 557 (1088)
..+.+++++ +++.++++++ .||.|++||+.+++..... .+...+.+++|+|+++.+++++. .++.|
T Consensus 254 ~~~~~~~~~--~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~---~~~~v 327 (433)
T 3bws_A 254 GLPRGLLLS--KDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDM---CCSKI 327 (433)
T ss_dssp SEEEEEEEC--TTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEET---TTTEE
T ss_pred CCceEEEEc--CCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEec---CCCEE
Confidence 458888884 5677888887 4889999999887665544 33347889999999987766542 35679
Q ss_pred EEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeC---------------CCcEEEEEcCCCeeeEEEeCCCCC
Q 001386 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---------------DHVIKIWDMNKVQLLTTIDAGGGL 622 (1088)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---------------dg~i~iwd~~~~~~~~~~~~~~~~ 622 (1088)
.+||..+++.+..+.. . ..+.+++|+|+++++++++. ||.|++||+.+++.+..+..+.
T Consensus 328 ~v~d~~~~~~~~~~~~-~---~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~-- 401 (433)
T 3bws_A 328 EVYDLKEKKVQKSIPV-F---DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGN-- 401 (433)
T ss_dssp EEEETTTTEEEEEEEC-S---SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSS--
T ss_pred EEEECCCCcEEEEecC-C---CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCC--
Confidence 9999999988887763 3 57899999999999998876 5799999999999998887643
Q ss_pred CCCceEEEecCCCEEEEEeC-CCcEEEEeCC
Q 001386 623 PENPRICFNKNGTLLAVIAN-ENRIKILETP 652 (1088)
Q Consensus 623 ~~v~~v~~s~~~~~l~~~~~-dg~i~iwd~~ 652 (1088)
.+.+++|+|+|++|++++. |+.|++|++.
T Consensus 402 -~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 402 -QPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp -SEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred -CCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 4789999999999998875 9999999976
No 123
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.2e-27 Score=271.83 Aligned_cols=300 Identities=12% Similarity=0.062 Sum_probs=227.1
Q ss_pred ccEEEEEEecCCceEEEeccccceEEEEccCCC---CCCCCCCCCcccCCCCC--------------C------------
Q 001386 735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRND---LTLSTEVPPRLYQPRHG--------------P------------ 785 (1088)
Q Consensus 735 ~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~---~~~~~~~~~~~~~~~~~--------------~------------ 785 (1088)
.++.+++|+++|++++ ++.++.|++|++..+. .. ..|..... .
T Consensus 5 ~p~~~v~~s~dg~~l~-~~~~~~i~v~d~~~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVF-AIIKNCILSFKYQSPNHWEFA-------GKWSDDFDKIQESRNTTAKEQQGQSSENENENKKL 76 (450)
T ss_dssp CCCCEEEECSSSSEEE-EEETTEEEEEEEETTTEEEEE-------EEEECCC----------------------------
T ss_pred ccEEEEEecCCCCEEE-EEeCCeEEEEECCCCCcceee-------eecCCccccccccccccchhhcccccccccccccc
Confidence 4678899999999544 5568899999987765 11 01110000 0
Q ss_pred -------------cceeeccCCCCCCCCeeEEEEecCCCEE-EEEe-CCcEEEEEcC--CceeEEEec--CCCCCeEEEE
Q 001386 786 -------------QFMVNDTTDSNSQEAVPCFALSKNDAYL-FSAS-GGVISLYIVM--TFKTILTIM--PPSPTATSLA 846 (1088)
Q Consensus 786 -------------~~~~~~~~~~~~~~~v~~~~~s~dg~~l-~~~~-dg~i~iwd~~--~~~~~~~~~--~~~~~i~~l~ 846 (1088)
..........+|...|.+++|+|++++| ++++ ||.|++||+. +++.+..+. .|...|++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 156 (450)
T 2vdu_B 77 KSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAIS 156 (450)
T ss_dssp -----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEE
T ss_pred ccCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEE
Confidence 0000000011356689999999999996 7776 8999999999 888888876 5678999999
Q ss_pred EcCCCCcEEEEEeCCCeEEEEEcCCceeee----eeccccCCeeEEEECCC---CCEEEEEeCCCcEEEEEcCCCceeee
Q 001386 847 FNPHDNNVIAIGMDDSTILIYNARSSEVIS----KLEGHSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDGWGIQTC 919 (1088)
Q Consensus 847 ~sp~d~~~lasg~~dg~i~lwd~~~~~~~~----~l~~h~~~V~~l~~s~d---g~~las~s~Dg~i~iwd~~~~~~~~~ 919 (1088)
|+| ++++|++|+.||.|++|++.+++... .+.+|.+.|.+++|+|+ +++|++++.|++|++||+.+++...
T Consensus 157 ~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~- 234 (450)
T 2vdu_B 157 IAE-DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD- 234 (450)
T ss_dssp ECT-TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE-
T ss_pred EcC-CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee-
Confidence 999 89999999999999999999887554 78899999999999999 9999999999999999998865321
Q ss_pred eeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeeeeec------------------------CCC
Q 001386 920 RSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFP------------------------ISS 974 (1088)
Q Consensus 920 ~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~------------------------~h~ 974 (1088)
....+|.. .|.+++|+ |+++|++ +.|+.|++||+.+++++..+.. .+.
T Consensus 235 ---~~~~~h~~---~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (450)
T 2vdu_B 235 ---KWLFGHKH---FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIE 307 (450)
T ss_dssp ---EECCCCSS---CEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBC
T ss_pred ---eeecCCCC---ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccce
Confidence 11334543 79999999 9999999 5789999999999998877542 224
Q ss_pred cCEEEEEEeeCCCEEEEEe-CCCcEEEEEc--CCC---ceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeC-
Q 001386 975 VPISQATFSCDCRMVFTSF-VDGTLSIHEA--SNL---EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLT- 1047 (1088)
Q Consensus 975 ~~v~~l~fs~dg~~l~s~s-~dg~v~vwd~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~- 1047 (1088)
..|.+++|+||+++|++++ .|+.|++|++ .++ ..+..+... -.+.+++|+| + .++++++.
T Consensus 308 ~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-----------~~v~~~~~~~-~-~~~v~~~~~ 374 (450)
T 2vdu_B 308 FAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-----------YNVISLSAHN-D-EFQVTLDNK 374 (450)
T ss_dssp CCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-----------SCEEEEEEET-T-EEEEEECCT
T ss_pred EEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-----------CceEEEEecC-C-cEEEEEecc
Confidence 5799999999999999999 8999999999 555 444444311 2357799999 4 44444432
Q ss_pred ------CCcEEEEeCCCCCCCcc
Q 001386 1048 ------NGEVYVIEPNEPGDTWA 1064 (1088)
Q Consensus 1048 ------dg~v~~w~l~~~~~~~~ 1064 (1088)
+..|.+|.+.....+|.
T Consensus 375 ~~~~~~~~~i~v~~~~~~~~~~~ 397 (450)
T 2vdu_B 375 ESSGVQKNFAKFIEYNLNENSFV 397 (450)
T ss_dssp TCCSSCCCSEEEEEEETTTTEEE
T ss_pred cCCCCCCcceEEEEEEcCCCeEE
Confidence 55689999877666663
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.7e-27 Score=264.14 Aligned_cols=278 Identities=8% Similarity=0.047 Sum_probs=216.6
Q ss_pred EecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecC
Q 001386 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA 527 (1088)
Q Consensus 448 ~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 527 (1088)
.+.+++. ++++|+.||+|++||+.+++.+..+. ...|.++.+++. +++++.|++|++|+.+.
T Consensus 43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~--------- 104 (343)
T 3lrv_A 43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGN--------- 104 (343)
T ss_dssp SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTT---------
T ss_pred hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccC---------
Confidence 4456677 89999999999999999999988876 456777777553 99999999999998642
Q ss_pred CCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEe-ccccccccEEEEEEeC--CCCEEEEEeCCCcEEE
Q 001386 528 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKI 604 (1088)
Q Consensus 528 ~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~--~~~~l~~~s~dg~i~i 604 (1088)
.+.+|+..+++.++.+. +|. ..|.+++|+| +++++++++.||.|++
T Consensus 105 ----------------------------~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~l~s~s~dg~i~~ 153 (343)
T 3lrv_A 105 ----------------------------QITILDSKTNKVLREIEVDSA---NEIIYMYGHNEVNTEYFIWADNRGTIGF 153 (343)
T ss_dssp ----------------------------EEEEEETTTCCEEEEEECCCS---SCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred ----------------------------ceEEeecCCcceeEEeecCCC---CCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence 27789998888776665 444 7899999999 9999999999999999
Q ss_pred EEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcc-cccccccCcceeeeecCCCcceeccc
Q 001386 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV-DAAGVLSDNLRKLSVNPISTVTGAGI 683 (1088)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~~~~~ 683 (1088)
||+.+++.+.....+. ...+.+++|+|++.++++|+.||.|++||+.+++.. ..+.
T Consensus 154 wd~~~~~~~~~~~~~~-~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~---------------------- 210 (343)
T 3lrv_A 154 QSYEDDSQYIVHSAKS-DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFP---------------------- 210 (343)
T ss_dssp EESSSSCEEEEECCCS-SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECC----------------------
T ss_pred EECCCCcEEEEEecCC-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEe----------------------
Confidence 9999999876664432 235899999999999999999999999998865321 0000
Q ss_pred cCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEc
Q 001386 684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 763 (1088)
Q Consensus 684 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~ 763 (1088)
T Consensus 211 -------------------------------------------------------------------------------- 210 (343)
T 3lrv_A 211 -------------------------------------------------------------------------------- 210 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecC---CCC
Q 001386 764 PRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP---PSP 840 (1088)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~---~~~ 840 (1088)
.+|...|.+++|+|+|.+|++++++.|++||+.+++.+..+.. |..
T Consensus 211 -------------------------------~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~ 259 (343)
T 3lrv_A 211 -------------------------------VDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEF 259 (343)
T ss_dssp -------------------------------CCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC---
T ss_pred -------------------------------ccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccc
Confidence 0166778888888888888888877888888888776555443 333
Q ss_pred Ce--EEEEEcCCCCcEEEEEeC-CCeEEEEEcCCceeeeeeccccCCeeEEEECC---CCCEEEEEeCCCcEEEEEcCC
Q 001386 841 TA--TSLAFNPHDNNVIAIGMD-DSTILIYNARSSEVISKLEGHSKRVTGLVFSD---ALNILVSSGGDAQIFVWDVDG 913 (1088)
Q Consensus 841 ~i--~~l~~sp~d~~~lasg~~-dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~---dg~~las~s~Dg~i~iwd~~~ 913 (1088)
.+ .+++|+| ++++|++++. |+.|+||++.++...... .++..++|++ +.+.+++++.||.+.++-...
T Consensus 260 ~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 260 KTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp --CCEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred cccceEEEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 33 4699999 8999999998 999999999765433322 5678889998 889999999999999886554
No 125
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=6.8e-27 Score=268.00 Aligned_cols=254 Identities=16% Similarity=0.312 Sum_probs=213.1
Q ss_pred eeecCCCCCeEEEEECCC-CCEEEEEeCCCEEEEEEccCC-------CcccceeEeccCCCCEEEEEecCCCCcEEEEEE
Q 001386 390 ALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGG-------SDARQQLEIDAHVGNVNDLAFSAPCKQISVITC 461 (1088)
Q Consensus 390 ~~~~~h~~~V~~l~~s~d-g~~las~~~dg~i~vwd~~~~-------~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~ 461 (1088)
....+|.+.|++++|+|+ +.+||+++.+|.|++||+.+. ........+.+|...|.+++|+|++.. +|++|
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~ 200 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSA 200 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEE
Confidence 346679999999999997 789999999999999999872 112344478899999999999999886 68999
Q ss_pred eCCCcEEEEeCCCCce-------eEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCC---CceEEecCCCCc
Q 001386 462 GDDKTIKVWDAVTGSR-------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLG 531 (1088)
Q Consensus 462 s~d~~i~vwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~ 531 (1088)
+.||.|++||+.++.. ...+.+|...|.+++|++. ++.+|++++.||.|++||++.. .....+..+...
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 279 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE 279 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSC
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCC
Confidence 9999999999987432 4667789999999999764 4579999999999999999987 456677788899
Q ss_pred eEEEEEccCCC-EEEEEeeCCCCceeEEEEeCCC-CceeEEEeccccccccEEEEEEeCCCC-EEEEEeCCCcEEEEEcC
Q 001386 532 CTRMAYSANGR-RLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMN 608 (1088)
Q Consensus 532 v~~~~~s~~g~-~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~ 608 (1088)
|.+++|+|++. .+++++. ++.|++||+++ +..+..+.+|. ..|.+++|+|+++ .+++++.|+.|++||+.
T Consensus 280 v~~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~---~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~ 352 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHK---DEIFQVQWSPHNETILASSGTDRRLHVWDLS 352 (430)
T ss_dssp EEEEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCS---SCEEEEEECSSCTTEEEEEETTSCCEEEEGG
T ss_pred eEEEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCC---CCEEEEEECCCCCCEEEEEeCCCcEEEEeCC
Confidence 99999999998 4667764 56799999997 56788888887 8999999999985 68889999999999998
Q ss_pred C--------------CeeeEEEeCCCCCCCCceEEEecCCC-EEEEEeCCCcEEEEeCCCC
Q 001386 609 K--------------VQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES 654 (1088)
Q Consensus 609 ~--------------~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~~ 654 (1088)
. .+.+..+..| ...|.+++|+|+++ ++++++.||.|++|++...
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 353 KIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp GTTCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCccccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 7 2445555444 34699999999999 9999999999999998743
No 126
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=1.6e-28 Score=277.44 Aligned_cols=245 Identities=13% Similarity=0.070 Sum_probs=150.6
Q ss_pred ecCCCCeEEEEEcccCcEEEEecCCCccee-----eeceeeeeeccccc-----cceeeeecCCCCCeEEEEECCCCCEE
Q 001386 342 FHPVQHTLLLVGTNVGDTGLWDVNSGQKLF-----IRNFKVWDIGACSM-----LFKTALVRDPGVSVNRVVWSPDGSLL 411 (1088)
Q Consensus 342 ~spdg~~lla~g~~dg~i~iwd~~~~~~~~-----~~~~~~~d~~~~~~-----~~~~~~~~~h~~~V~~l~~s~dg~~l 411 (1088)
.+|++..++++|. ++.|.+|+........ ...+..|+...... .........|...+....+++++.+|
T Consensus 26 ~~~~~~~l~a~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (393)
T 4gq1_A 26 QSPSCSNLLAIGH-DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFL 104 (393)
T ss_dssp TSGGGTTEEEEEE-SSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEEE
T ss_pred CCCCCCCEEEEEC-CCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCEE
Confidence 3566665666664 6789999874322111 11112222111100 00111233455566666677788999
Q ss_pred EEEeCCCEEEEEEccCCCccc--ceeEeccCCCCEEEEEecC--------CCCcEEEEEEeCCCcEEEEeCCCCceeEEe
Q 001386 412 GVAYSKHIVQLYAYHGGSDAR--QQLEIDAHVGNVNDLAFSA--------PCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1088)
Q Consensus 412 as~~~dg~i~vwd~~~~~~~~--~~~~~~~h~~~v~~~~~s~--------d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~ 481 (1088)
|+++.|++|+|||+.+++... ....+.+|.+.|++++|+| |++ +|++++.|++|+|||+.++.++..+
T Consensus 105 as~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~Wd~~~~~~~~~~ 182 (393)
T 4gq1_A 105 ACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIWRLTDEGPILAG 182 (393)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEEEEETTEEEEEE
T ss_pred EEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEEECCCCceeeee
Confidence 999999999999999886532 2234779999999999998 777 8999999999999999999988888
Q ss_pred ccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEe
Q 001386 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1088)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd 561 (1088)
.+|..+|.+++|+|. +..+|++++.||+|++||+++.+.......+........+++ +
T Consensus 183 ~~~~~~v~~v~~~p~-~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~---------------------~ 240 (393)
T 4gq1_A 183 YPLSSPGISVQFRPS-NPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTL---------------------N 240 (393)
T ss_dssp EECSSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEE---------------------E
T ss_pred cCCCCCcEEEEECCC-CCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEec---------------------c
Confidence 899999999999763 235899999999999999988765544332222111111111 1
Q ss_pred CCCCceeEEEeccccccccEEEEEEe-CCCCEEEEEeCCCcEEEEEcCCCeeeE
Q 001386 562 ESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDDHVIKIWDMNKVQLLT 614 (1088)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~dg~i~iwd~~~~~~~~ 614 (1088)
...........+|. ..+.++.|. ++++.+++++.|+++++||+..++...
T Consensus 241 ~~~~~~~~~~~~~~---~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~ 291 (393)
T 4gq1_A 241 TLPLVNTCHSSGIA---SSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYN 291 (393)
T ss_dssp SGGGC------CCS---SSCSEEEEETTTTCEEEEECTTSEEEEEEC-------
T ss_pred cccceeeeeccccc---ccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCc
Confidence 11111111223444 678888887 899999999999999999987765433
No 127
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.9e-28 Score=268.55 Aligned_cols=272 Identities=10% Similarity=0.057 Sum_probs=213.7
Q ss_pred eeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCC
Q 001386 339 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 418 (1088)
Q Consensus 339 ~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg 418 (1088)
...+.+|+. ++++|+.||+|++||+.+++.+... . ...|.+++|+|+ +++++.|+
T Consensus 41 ~~~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~~-------------------~--~~~v~~~~~~~~---~~s~s~D~ 95 (343)
T 3lrv_A 41 NKSMYYDKW-VCMCRCEDGALHFTQLKDSKTITTI-------------------T--TPNPRTGGEHPA---IISRGPCN 95 (343)
T ss_dssp CSSSSEEEE-EEEEEEETTEEEEEEESSSSCEEEE-------------------E--EECCCTTCCCCS---EEEECSTT
T ss_pred hhhhcCCCC-EEEEECCCCcEEEEECCCCcEEEEE-------------------e--cCCceeeeeCCc---eEEecCCC
Confidence 345567787 7999999999999999999877541 1 356778889988 99999999
Q ss_pred EEEEEEcc---------CCCcccceeEeccCCCCEEEEEecC--CCCcEEEEEEeCCCcEEEEeCCCCceeEEecc-CCc
Q 001386 419 IVQLYAYH---------GGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGA 486 (1088)
Q Consensus 419 ~i~vwd~~---------~~~~~~~~~~~~~h~~~v~~~~~s~--d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~-~~~ 486 (1088)
+|++|+.. +++.++. ...+|...|.+++|+| +++ ++++++.|++|++||+.+++++..... |..
T Consensus 96 ~i~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~ 171 (343)
T 3lrv_A 96 RLLLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDV 171 (343)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSC
T ss_pred eEEEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCC
Confidence 99999766 3332221 1236778999999999 999 899999999999999999999776644 456
Q ss_pred cEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCce-EEecC-CCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC
Q 001386 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1088)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 564 (1088)
.|.+++|+ +++.+|++|+.||.|++||+++.... ..+.. |...|.+++|+|+|.+|++++. +.|++||+++
T Consensus 172 ~i~~~~~~--pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-----~~v~iwd~~~ 244 (343)
T 3lrv_A 172 EYSSGVLH--KDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-----QTVVCFDLRK 244 (343)
T ss_dssp CCCEEEEC--TTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-----SBEEEEETTS
T ss_pred ceEEEEEC--CCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-----CeEEEEEcCC
Confidence 89999995 47789999999999999999998877 67777 8899999999999999999982 2699999999
Q ss_pred CceeEEEeccccccccE--EEEEEeCCCCEEEEEeC-CCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec---CCCEEE
Q 001386 565 GAIKRTYQGLQLQHNSV--SVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---NGTLLA 638 (1088)
Q Consensus 565 ~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~ 638 (1088)
++.+..+..+..+...+ .+++|+|+++++++++. |+.|++|++.+....... ..+..++|++ +.+.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~ 318 (343)
T 3lrv_A 245 DVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMD 318 (343)
T ss_dssp STTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEE
T ss_pred CCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeE
Confidence 88766655432122333 46999999999999998 999999999765543333 1356677887 888999
Q ss_pred EEeCCCcEEEEeCC
Q 001386 639 VIANENRIKILETP 652 (1088)
Q Consensus 639 ~~~~dg~i~iwd~~ 652 (1088)
+++.||.+.++-..
T Consensus 319 ~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 319 VVCGDGGIAAILKT 332 (343)
T ss_dssp EEEETTEEEEEEEC
T ss_pred EEecCCceEEEEec
Confidence 99999999887543
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=2.6e-26 Score=268.36 Aligned_cols=343 Identities=9% Similarity=0.084 Sum_probs=257.3
Q ss_pred EEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEc--CCCeee
Q 001386 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM--NKVQLL 613 (1088)
Q Consensus 536 ~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~--~~~~~~ 613 (1088)
+++|++..++++.. ++.|.+||..+++++.++.... .+..++|+|+|+++++++.|+.|++||+ .+++.+
T Consensus 144 ~~~p~~~~~vs~~~----d~~V~v~D~~t~~~~~~i~~g~----~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~ 215 (543)
T 1nir_A 144 DLDLPNLFSVTLRD----AGQIALVDGDSKKIVKVIDTGY----AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV 215 (543)
T ss_dssp CCCGGGEEEEEEGG----GTEEEEEETTTCCEEEEEECST----TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE
T ss_pred ccCCCCEEEEEEcC----CCeEEEEECCCceEEEEEecCc----ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEE
Confidence 37888877777654 5679999999999999988544 3889999999999999999999999999 889998
Q ss_pred EEEeCCCCCCCCceEEEec----CCCEEEEEeC-CCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCce
Q 001386 614 TTIDAGGGLPENPRICFNK----NGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 688 (1088)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~----~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~ 688 (1088)
..+.... ....++|+| ||+++++++. +++|.+||..+++.+..+..+...+....++
T Consensus 216 ~~i~~g~---~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~--------------- 277 (543)
T 1nir_A 216 AEIKIGI---EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH--------------- 277 (543)
T ss_dssp EEEECCS---EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE---------------
T ss_pred EEEecCC---CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccc---------------
Confidence 8887533 368999999 9999999884 8999999998877665443211100000000
Q ss_pred eecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceE-EEeccccceEEEEccCCC
Q 001386 689 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI-FALASNGVHLMWRWPRND 767 (1088)
Q Consensus 689 ~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l-~~~~~dg~v~iw~~~~~~ 767 (1088)
....+..+.+++++..+ ++...++.|.+|++....
T Consensus 278 --------------------------------------------~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~ 313 (543)
T 1nir_A 278 --------------------------------------------PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID 313 (543)
T ss_dssp --------------------------------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS
T ss_pred --------------------------------------------cCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCC
Confidence 12367889999977655 455668999999875432
Q ss_pred CCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe--CCcEEEEEcCCceeEEEecC----CCCC
Q 001386 768 LTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP----PSPT 841 (1088)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~----~~~~ 841 (1088)
. +....+ .+...+..++|+|+|++++++. +++|.+||..+++++..+.. |.+.
T Consensus 314 ~------------------l~~~~i---~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~ 372 (543)
T 1nir_A 314 N------------------LTVTSI---GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGR 372 (543)
T ss_dssp S------------------CEEEEE---ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTT
T ss_pred c------------------ceeEEe---ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCC
Confidence 1 111111 1345677899999999877665 78999999999999888774 5444
Q ss_pred eEEEEEcCCCCcEEEEEe-CCCeEEEEEcCC-------ceeeeeeccccCCeeEEEECCCCCEEEEEe-------CCCcE
Q 001386 842 ATSLAFNPHDNNVIAIGM-DDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSG-------GDAQI 906 (1088)
Q Consensus 842 i~~l~~sp~d~~~lasg~-~dg~i~lwd~~~-------~~~~~~l~~h~~~V~~l~~s~dg~~las~s-------~Dg~i 906 (1088)
...+ ++|+++.+++++. .|++|.|||+.+ +++++++.+|.+.+..++|+|||++|++++ .+++|
T Consensus 373 g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v 451 (543)
T 1nir_A 373 GANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSV 451 (543)
T ss_dssp CEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCE
T ss_pred Cccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceE
Confidence 4333 5774577788776 689999999998 899999999999899999999999999987 26799
Q ss_pred EEEEcCCCcee-eeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE------eCCeEEEEEcCcceeeeeee
Q 001386 907 FVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV------HETHLAIYEAEELTCLKQWF 970 (1088)
Q Consensus 907 ~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~------~d~~i~vwd~~~~~~~~~~~ 970 (1088)
.+||+.+++.. ....+....+.......+.++.|+|||+.+.++ .++.|.|||..+++++..+.
T Consensus 452 ~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 452 AVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp EEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred EEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 99999997743 111111100111112368999999999999974 25899999999999988754
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=4.7e-26 Score=266.17 Aligned_cols=346 Identities=11% Similarity=0.107 Sum_probs=245.3
Q ss_pred eecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeec-CCCCCeEEEEECCCCCEEEEEeCCCE
Q 001386 341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR-DPGVSVNRVVWSPDGSLLGVAYSKHI 419 (1088)
Q Consensus 341 ~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~h~~~V~~l~~s~dg~~las~~~dg~ 419 (1088)
+|+|++. ++++++.|++|.+||..+++++.+ +. ++. +.+++|+|||++|++++.|++
T Consensus 144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~-------------------i~~g~~--~~~v~~spdg~~l~v~~~d~~ 201 (543)
T 1nir_A 144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKV-------------------IDTGYA--VHISRMSASGRYLLVIGRDAR 201 (543)
T ss_dssp CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEE-------------------EECSTT--EEEEEECTTSCEEEEEETTSE
T ss_pred ccCCCCE-EEEEEcCCCeEEEEECCCceEEEE-------------------EecCcc--cceEEECCCCCEEEEECCCCe
Confidence 4899996 789999999999999999988765 32 333 899999999999999999999
Q ss_pred EEEEEc--cCCCcccceeEeccCCCCEEEEEecC----CCCcEEEEEEe-CCCcEEEEeCCCCceeEEeccCCccEEEEe
Q 001386 420 VQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSA----PCKQISVITCG-DDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 492 (1088)
Q Consensus 420 i~vwd~--~~~~~~~~~~~~~~h~~~v~~~~~s~----d~~~l~l~s~s-~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 492 (1088)
|.+||+ .+++.+. ++. +...+..++|+| ||+ ++++++ .+++|.+||..+++++.++..+...+....
T Consensus 202 V~v~D~~~~t~~~~~---~i~-~g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 202 IDMIDLWAKEPTKVA---EIK-IGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT 275 (543)
T ss_dssp EEEEETTSSSCEEEE---EEE-CCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred EEEEECcCCCCcEEE---EEe-cCCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCccc
Confidence 999999 7776544 454 445689999999 999 566666 589999999999998887764321110000
Q ss_pred eeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeE--E
Q 001386 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR--T 570 (1088)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~--~ 570 (1088)
++ +...+..+.++|++..+++.. .+++.|.+||..+++.+. .
T Consensus 276 ~~---------------------------------~~~~v~~i~~s~~~~~~~vs~---~~~g~i~vvd~~~~~~l~~~~ 319 (543)
T 1nir_A 276 YH---------------------------------PEPRVAAIIASHEHPEFIVNV---KETGKVLLVNYKDIDNLTVTS 319 (543)
T ss_dssp EE---------------------------------SCCCEEEEEECSSSSEEEEEE---TTTTEEEEEECTTSSSCEEEE
T ss_pred cc---------------------------------cCCceEEEEECCCCCEEEEEE---CCCCeEEEEEecCCCcceeEE
Confidence 00 112456677888777666554 235568888887765443 3
Q ss_pred EeccccccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEE-EecC-CCEEEEEe-CCCcE
Q 001386 571 YQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC-FNKN-GTLLAVIA-NENRI 646 (1088)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~-~s~~-~~~l~~~~-~dg~i 646 (1088)
+. +. ..+..+.|+|+|+++++++ .+++|.+||..+++++..+........-..+. ++|+ +..++++. .|++|
T Consensus 320 i~-~~---~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V 395 (543)
T 1nir_A 320 IG-AA---PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSI 395 (543)
T ss_dssp EE-CC---SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEE
T ss_pred ec-cC---cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceE
Confidence 32 22 4677889999999887655 68999999999999999887532111112233 4677 66666665 57999
Q ss_pred EEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceee
Q 001386 647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 726 (1088)
Q Consensus 647 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~ 726 (1088)
.+|+..+.... .. -|.
T Consensus 396 ~v~d~~~~~~~-------~~---------------------------------------------~~~------------ 411 (543)
T 1nir_A 396 SLIGTDPKNHP-------QY---------------------------------------------AWK------------ 411 (543)
T ss_dssp EEEECCTTTCT-------TT---------------------------------------------BTS------------
T ss_pred EEEEeCCCCCc-------hh---------------------------------------------cCe------------
Confidence 99998752100 00 000
Q ss_pred ecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEE
Q 001386 727 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 806 (1088)
Q Consensus 727 ~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 806 (1088)
.+..+ + .+...+..+++
T Consensus 412 ---------~v~~l----------------------------------------------------~--~~g~~~~~v~~ 428 (543)
T 1nir_A 412 ---------KVAEL----------------------------------------------------Q--GQGGGSLFIKT 428 (543)
T ss_dssp ---------EEEEE----------------------------------------------------E--CSCSCCCCEEC
T ss_pred ---------EEEEE----------------------------------------------------E--cCCCCceEEEc
Confidence 00000 0 13334556788
Q ss_pred ecCCCEEEEEe--------CCcEEEEEcCCceeE-EEe--------cCCCCCeEEEEEcCCCCcEEEEEe-----CCCeE
Q 001386 807 SKNDAYLFSAS--------GGVISLYIVMTFKTI-LTI--------MPPSPTATSLAFNPHDNNVIAIGM-----DDSTI 864 (1088)
Q Consensus 807 s~dg~~l~~~~--------dg~i~iwd~~~~~~~-~~~--------~~~~~~i~~l~~sp~d~~~lasg~-----~dg~i 864 (1088)
+||+++|+++. +++|.+||+.+++.. ..+ ..+...+..++|+| +|+.|+++. .|+.|
T Consensus 429 ~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~~~~~~~i 507 (543)
T 1nir_A 429 HPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSAL 507 (543)
T ss_dssp CTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECCTTSCCEE
T ss_pred CCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC-CCCEEEEEeecCCCCCCeE
Confidence 88888888876 568999999998877 443 35567899999999 788777663 47999
Q ss_pred EEEEcCCceeeeeecccc
Q 001386 865 LIYNARSSEVISKLEGHS 882 (1088)
Q Consensus 865 ~lwd~~~~~~~~~l~~h~ 882 (1088)
.|||..+++++.+++.+.
T Consensus 508 ~v~D~~t~~~~~~i~~~~ 525 (543)
T 1nir_A 508 VVVDDKTLKLKAVVKDPR 525 (543)
T ss_dssp EEEETTTTEEEEEECCTT
T ss_pred EEEECCCceEEEeecCCC
Confidence 999999999999988643
No 130
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=1.4e-27 Score=269.72 Aligned_cols=276 Identities=7% Similarity=-0.024 Sum_probs=179.9
Q ss_pred eecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC-
Q 001386 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 406 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~- 406 (1088)
.....|...+....+++++. +||+|+.|++|+|||+.+++...... ...+.+|.+.|.+++|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~--------------~~~~~gH~~~v~~v~~~p~ 147 (393)
T 4gq1_A 83 YSENLHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHV--------------LGGKSGHHNFVNDIDIADV 147 (393)
T ss_dssp EECC----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEE--------------ECTTTSCSSCEEEEEEEEE
T ss_pred ccccccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeee--------------ecccCCCCCceEEEEEccc
Confidence 34456666667777777776 79999999999999999987654211 123789999999999998
Q ss_pred -------CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001386 407 -------DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1088)
Q Consensus 407 -------dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~ 479 (1088)
||++||+|+.|++|+|||+.++..+. .+.+|...|.+++|+|++.. +|++++.|++|++||+.+++...
T Consensus 148 ~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~ 223 (393)
T 4gq1_A 148 YSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAE 223 (393)
T ss_dssp ECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC---
T ss_pred cccccCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCcccc
Confidence 89999999999999999998876444 56689999999999999864 79999999999999999998776
Q ss_pred EeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEc-cCCCEEEEEeeCCCCceeEE
Q 001386 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLV 558 (1088)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~~~~~~~~i~ 558 (1088)
....+.......++..... ..........+...+.++.|+ ++++.+++++. ++.++
T Consensus 224 ~~~~~~~~~~~~~~s~~~~-------------------~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~ 280 (393)
T 4gq1_A 224 ENSQTELVKNPWLLTLNTL-------------------PLVNTCHSSGIASSLANVRWIGSDGSGILAMCK----SGAWL 280 (393)
T ss_dssp -------CSCCCSEEEESG-------------------GGC------CCSSSCSEEEEETTTTCEEEEECT----TSEEE
T ss_pred cccccCCcccceEEecccc-------------------cceeeeecccccccceeeeeecCCCCEEEEEeC----CCCEE
Confidence 6554433222222211111 001111223456678888886 79999999875 56699
Q ss_pred EEeCCCCceeEEEeccccccccEEEE------------------EEeC--CCCEEEEEeCCCcEEEEEcCCCeeeEEEeC
Q 001386 559 EWNESEGAIKRTYQGLQLQHNSVSVV------------------HFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1088)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~------------------~~~~--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1088)
+||+.++.....+..+. ..+..+ .++| ++.++++|+.||.|++||+.+++....+..
T Consensus 281 vwd~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~ 357 (393)
T 4gq1_A 281 RWNLFANNDYNEISDST---MKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ 357 (393)
T ss_dssp EEEC----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE
T ss_pred EEECccCCCCceEeeec---CccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecC
Confidence 99999887766665554 222222 2333 333566788999999999999988887766
Q ss_pred CCCCCCCceEEEecCCCEEEEEeCCCcEEEEeC
Q 001386 619 GGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1088)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1088)
+.. .|.+++|+|||++||+++.+| +.+|.+
T Consensus 358 ~~~--~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 358 LGM--PIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CSS--CEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCC--cEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 544 699999999999999998776 555544
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=1.7e-25 Score=253.79 Aligned_cols=307 Identities=9% Similarity=0.033 Sum_probs=241.1
Q ss_pred CCCCceeeeecCCCCeEEEEEc----ccC----cEEEEec--CCCcceeeeceeeeeeccccccceeeeecCCCCCeEEE
Q 001386 333 GSSSPMSMDFHPVQHTLLLVGT----NVG----DTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1088)
Q Consensus 333 h~~~V~~v~~spdg~~lla~g~----~dg----~i~iwd~--~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 402 (1088)
+...|...+|++.|..++++|+ .|| +|+|||+ .+++++.... +.+|...+..+
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~ 123 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS-----------------YKVNKQWLRYA 123 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE-----------------EEECGGGHHHH
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE-----------------EEcChhHHHHH
Confidence 3358899999999988888886 357 8999999 9998764322 45577777777
Q ss_pred EECC--------------CCCEEEEEeCC------CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEe
Q 001386 403 VWSP--------------DGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 462 (1088)
Q Consensus 403 ~~s~--------------dg~~las~~~d------g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s 462 (1088)
++++ .+..++.++.+ +.|++||+.++. .+ .+.+|...|.+++|+|||+ .|++++
T Consensus 124 ~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s 197 (415)
T 2hqs_A 124 GHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVT 197 (415)
T ss_dssp HHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEE
T ss_pred HHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEE
Confidence 6664 26777777654 799999998543 33 5778999999999999999 788888
Q ss_pred CCC---cEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEE-EEecCCe--EEEEECCCCCceEEecCCCCceEEEE
Q 001386 463 DDK---TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-SISVDGK--IKAWLYDSLGARVDYDAPGLGCTRMA 536 (1088)
Q Consensus 463 ~d~---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~ 536 (1088)
.++ .|++||+.++++. .+..|...+.+++|+ +||+.|+ +++.++. |++||+.+++. ..+..+...+.+++
T Consensus 198 ~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~s--pdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~ 273 (415)
T 2hqs_A 198 FESGRSALVIQTLANGAVR-QVASFPRHNGAPAFS--PDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPT 273 (415)
T ss_dssp CTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEEC--TTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEE
T ss_pred ecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEc--CCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceE
Confidence 775 9999999999875 566788899999995 5777777 6666655 99999987665 45666777899999
Q ss_pred EccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC---CcEEEEEcCCCeee
Q 001386 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLL 613 (1088)
Q Consensus 537 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~ 613 (1088)
|+|||++|++++. .++...|++||..+++. ..+..+. ..+..++|+|+|++|++++.+ ..|++||+.+++..
T Consensus 274 ~spdg~~l~~~s~-~~g~~~i~~~d~~~~~~-~~l~~~~---~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~ 348 (415)
T 2hqs_A 274 WFPDSQNLAFTSD-QAGRPQVYKVNINGGAP-QRITWEG---SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ 348 (415)
T ss_dssp ECTTSSEEEEEEC-TTSSCEEEEEETTSSCC-EECCCSS---SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE
T ss_pred ECCCCCEEEEEEC-CCCCcEEEEEECCCCCE-EEEecCC---CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE
Confidence 9999999998874 23355799999988874 3344444 678899999999999988764 58999999988764
Q ss_pred EEEeCCCCCCCCceEEEecCCCEEEEEeCCC---cEEEEeCCCCCcccccccccCcceeeeecCCC
Q 001386 614 TTIDAGGGLPENPRICFNKNGTLLAVIANEN---RIKILETPESNSVDAAGVLSDNLRKLSVNPIS 676 (1088)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~ 676 (1088)
.+..+. .+.+++|+|||++|++++.++ .|++||+. +.....+..+...|.+++|+|..
T Consensus 349 -~l~~~~---~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 349 -VLSSTF---LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp -ECCCSS---SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred -EecCCC---CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence 343332 588999999999999988877 79999987 55567788889999999999753
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=9.5e-24 Score=261.08 Aligned_cols=304 Identities=13% Similarity=0.077 Sum_probs=213.9
Q ss_pred CCCceeeeecCCCCeEEEEEcc-cC-----cEEEEecCCCcceeeeceeeee-----eccccccc-eeeeecCCCCCeEE
Q 001386 334 SSSPMSMDFHPVQHTLLLVGTN-VG-----DTGLWDVNSGQKLFIRNFKVWD-----IGACSMLF-KTALVRDPGVSVNR 401 (1088)
Q Consensus 334 ~~~V~~v~~spdg~~lla~g~~-dg-----~i~iwd~~~~~~~~~~~~~~~d-----~~~~~~~~-~~~~~~~h~~~V~~ 401 (1088)
...|.+++|||||+ .|++++. |+ +|++||+.+++........-.. +....... ....+. ....|.+
T Consensus 36 ~~~~~~~~~SpdG~-~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS-RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIA-AMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSS-EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC---------------------CCEESCC
T ss_pred CCCCCCceEecCCC-EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhc-cccCcce
Confidence 34799999999999 4677766 77 8999999999765432110000 00000000 000000 0134889
Q ss_pred EEECCCCCEEEEEeCCCEEEEEEccCCC--cccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001386 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGS--DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1088)
Q Consensus 402 l~~s~dg~~las~~~dg~i~vwd~~~~~--~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~ 479 (1088)
++|||||++|++++. +.|++||+.++. ... .+..|...+.+++|||||+ .|+.++ ++.|++||+.+++...
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEE
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEE
Confidence 999999999999986 899999999882 223 4667888999999999999 677776 5689999999987765
Q ss_pred EeccCCcc----------------EEEEeeeeeCCceEEEEEecCC---------------------------------e
Q 001386 480 SFEGHGAP----------------VYSLCPHAKENIHFIFSISVDG---------------------------------K 510 (1088)
Q Consensus 480 ~~~~~~~~----------------v~~~~~~~~~~~~~l~s~~~dg---------------------------------~ 510 (1088)
....+... +..++| ++||++|++++.|+ .
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~--SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWW--APDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEE--CTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred eccCCccceeccccceeeeeccccccceEE--CCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 55444433 255666 66888999988776 7
Q ss_pred EEEEECCC-CCceEEec--CCCCceEEEEEccCCCEEEEEeeC-CCCceeEEEEeCCCCceeEEEeccccc-cccEEEEE
Q 001386 511 IKAWLYDS-LGARVDYD--APGLGCTRMAYSANGRRLFSCGTS-KEGESFLVEWNESEGAIKRTYQGLQLQ-HNSVSVVH 585 (1088)
Q Consensus 511 i~iwd~~~-~~~~~~~~--~~~~~v~~~~~s~~g~~l~~~~~~-~~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~ 585 (1088)
|.+||+.+ ++...... .+...+..++| |||++|+++..+ ...+..|++||..+++....+..+... ...+..++
T Consensus 265 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 343 (741)
T 2ecf_A 265 LGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLR 343 (741)
T ss_dssp EEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCE
T ss_pred EEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceE
Confidence 88999988 76554433 35567899999 999999987652 334678999999999887777665410 00346789
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcC-CCeeeEEEeCCCCCCCCceE-EEecCCCEEEEEe-CCC--cEEEEeCC
Q 001386 586 FDTAKDQILAAGDDHVIKIWDMN-KVQLLTTIDAGGGLPENPRI-CFNKNGTLLAVIA-NEN--RIKILETP 652 (1088)
Q Consensus 586 ~~~~~~~l~~~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v-~~s~~~~~l~~~~-~dg--~i~iwd~~ 652 (1088)
|+|||+.+++++.+|.++||.+. +++ ...+..+ ...+..+ .|+|+++.++..+ .++ .++||++.
T Consensus 344 ~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 344 FLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred ECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 99999988889999988888775 344 5555443 2346666 5999998776554 444 78888875
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=7e-24 Score=240.61 Aligned_cols=306 Identities=13% Similarity=0.117 Sum_probs=227.4
Q ss_pred CCCEEEEEecCCCCcEEEEEEe----CCC----cEEEEeC--CCCcee--EEeccCCccEEEEeeeee------------
Q 001386 441 VGNVNDLAFSAPCKQISVITCG----DDK----TIKVWDA--VTGSRT--YSFEGHGAPVYSLCPHAK------------ 496 (1088)
Q Consensus 441 ~~~v~~~~~s~d~~~l~l~s~s----~d~----~i~vwd~--~~~~~~--~~~~~~~~~v~~~~~~~~------------ 496 (1088)
...+...+|.+.|.. ++++|+ .|| .|++||+ .+++++ ..+.+|...+..+++.+.
T Consensus 62 ~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 346778889999876 566775 467 8999999 999987 458888888877766431
Q ss_pred CCceEEEEEecC------CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEE
Q 001386 497 ENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1088)
Q Consensus 497 ~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1088)
..+..++.++.+ +.|++||++. .....+..+...+.+++|+|||++|++++.++ +...|++||+.+++.. .
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d~~tg~~~-~ 217 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVR-Q 217 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEE-E
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCcEE-E
Confidence 013456666554 7999999975 44556666778999999999999999988542 3467999999998875 4
Q ss_pred EeccccccccEEEEEEeCCCCEEE-EEeCCCc--EEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC-CC--
Q 001386 571 YQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-EN-- 644 (1088)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~-~~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg-- 644 (1088)
+..+. ..+.+++|+|||+.|+ +++.++. |++||+.+++. ..+..+. ..+.+++|+|||+.|++++. ++
T Consensus 218 l~~~~---~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~--~~~~~~~~spdg~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 218 VASFP---RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGR--SNNTEPTWFPDSQNLAFTSDQAGRP 291 (415)
T ss_dssp EECCS---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCS--SCEEEEEECTTSSEEEEEECTTSSC
T ss_pred eecCC---CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCC--CcccceEECCCCCEEEEEECCCCCc
Confidence 55555 6899999999999888 5665554 99999998876 3444332 35789999999999988876 34
Q ss_pred cEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcce
Q 001386 645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 724 (1088)
Q Consensus 645 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~ 724 (1088)
.|.+||+.+++... +
T Consensus 292 ~i~~~d~~~~~~~~-l---------------------------------------------------------------- 306 (415)
T 2hqs_A 292 QVYKVNINGGAPQR-I---------------------------------------------------------------- 306 (415)
T ss_dssp EEEEEETTSSCCEE-C----------------------------------------------------------------
T ss_pred EEEEEECCCCCEEE-E----------------------------------------------------------------
Confidence 45555655331100 0
Q ss_pred eeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEE
Q 001386 725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 804 (1088)
Q Consensus 725 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 804 (1088)
. .+...+.++
T Consensus 307 --------------------------------------------------------------------~--~~~~~~~~~ 316 (415)
T 2hqs_A 307 --------------------------------------------------------------------T--WEGSQNQDA 316 (415)
T ss_dssp --------------------------------------------------------------------C--CSSSEEEEE
T ss_pred --------------------------------------------------------------------e--cCCCcccCe
Confidence 0 022345567
Q ss_pred EEecCCCEEEEEe-C---CcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC---eEEEEEcCCceeeee
Q 001386 805 ALSKNDAYLFSAS-G---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS---TILIYNARSSEVISK 877 (1088)
Q Consensus 805 ~~s~dg~~l~~~~-d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg---~i~lwd~~~~~~~~~ 877 (1088)
+|+|||++|++++ + ..|.+||+.+++.. .+..+. .+.+++|+| ++++|++++.++ .|++||+. +.....
T Consensus 317 ~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~ 392 (415)
T 2hqs_A 317 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-GRFKAR 392 (415)
T ss_dssp EECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-SCCEEE
T ss_pred EECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-CCcEEE
Confidence 7788888777765 2 46999999988764 455454 899999999 889888888777 89999987 556788
Q ss_pred eccccCCeeEEEECCCCC
Q 001386 878 LEGHSKRVTGLVFSDALN 895 (1088)
Q Consensus 878 l~~h~~~V~~l~~s~dg~ 895 (1088)
+.+|.+.|.+++|+|.-.
T Consensus 393 l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 393 LPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp CCCSSSEEEEEEECCCCC
T ss_pred eeCCCCCCcCCccccccc
Confidence 999999999999999643
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=3.5e-23 Score=256.03 Aligned_cols=243 Identities=9% Similarity=0.050 Sum_probs=172.1
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCC----------------eEEEEEcCCCCcEEEEEeC
Q 001386 797 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPT----------------ATSLAFNPHDNNVIAIGMD 860 (1088)
Q Consensus 797 ~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------------i~~l~~sp~d~~~lasg~~ 860 (1088)
+...+.+++|||||++|+.++++.|++||+.+++.......+... +.+++||| ||++|++++.
T Consensus 150 ~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~ 228 (741)
T 2ecf_A 150 GEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARI 228 (741)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEE
T ss_pred CCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEE
Confidence 445677888999999999888888999999888766554444332 47899999 8999998877
Q ss_pred CC---------------------------------eEEEEEcCC-ceeeeeec--cccCCeeEEEECCCCCEEEEEeC--
Q 001386 861 DS---------------------------------TILIYNARS-SEVISKLE--GHSKRVTGLVFSDALNILVSSGG-- 902 (1088)
Q Consensus 861 dg---------------------------------~i~lwd~~~-~~~~~~l~--~h~~~V~~l~~s~dg~~las~s~-- 902 (1088)
|+ .|++||+.+ ++...... .|...+..++| |||++|++++.
T Consensus 229 d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~ 307 (741)
T 2ecf_A 229 DESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSR 307 (741)
T ss_dssp ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEET
T ss_pred cCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecc
Confidence 65 899999998 87654443 47788999999 99999997764
Q ss_pred ---CCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCCeEEEEEcC-cceeeeeeecCCCcCE
Q 001386 903 ---DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAE-ELTCLKQWFPISSVPI 977 (1088)
Q Consensus 903 ---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~vwd~~-~~~~~~~~~~~h~~~v 977 (1088)
+..|++||+.+++......... .+.. ..+.+++|+|||++++++ .++.++||.+. ++. ... +..|...+
T Consensus 308 ~~~~~~i~~~d~~~g~~~~~~~~~~-~~~~---~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~-l~~~~~~v 381 (741)
T 2ecf_A 308 DQKKLDLVEVTLASNQQRVLAHETS-PTWV---PLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAA-LTHGNWSV 381 (741)
T ss_dssp TSSEEEEEEEETTTCCEEEEEEEEC-SSCC---CCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEE-SCCSSSCE
T ss_pred cCCeEEEEEEECCCCceEEEEEcCC-CCcC---CcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eee-eeecceEE
Confidence 5679999999876433211111 1110 024578999999977775 56667777665 344 444 45667788
Q ss_pred EEE-EEeeCCCEEEEEe-CCC--cEEEEEcCC-CceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCC----
Q 001386 978 SQA-TFSCDCRMVFTSF-VDG--TLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN---- 1048 (1088)
Q Consensus 978 ~~l-~fs~dg~~l~s~s-~dg--~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~d---- 1048 (1088)
..+ .|||||+.|++.+ .++ .+++|++.. +.....+.. . . ....++|+| ||+.|++...+
T Consensus 382 ~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~----~-----~--~~~~~~~sp-dg~~l~~~~~~~~~p 449 (741)
T 2ecf_A 382 DELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK----A-----P--GMHSASFAR-NASVYVDSWSNNSTP 449 (741)
T ss_dssp EEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC----S-----C--SEEEEEECT-TSSEEEEEEEETTEE
T ss_pred EeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc----C-----C--CceEEEECC-CCCEEEEEecCCCCC
Confidence 887 5999999876544 455 899999875 543444331 0 1 124689999 78888777655
Q ss_pred CcEEEEeCCCC
Q 001386 1049 GEVYVIEPNEP 1059 (1088)
Q Consensus 1049 g~v~~w~l~~~ 1059 (1088)
+.+++|++...
T Consensus 450 ~~~~l~~~~~~ 460 (741)
T 2ecf_A 450 PQIELFRANGE 460 (741)
T ss_dssp EEEEEEETTSC
T ss_pred CeEEEEEcCCC
Confidence 47889987543
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=2.5e-23 Score=256.67 Aligned_cols=313 Identities=9% Similarity=0.078 Sum_probs=224.7
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCC---CeEEEEECCCCCEEE
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGSLLG 412 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~---~V~~l~~s~dg~~la 412 (1088)
.+.+++|||||+ ++++ +.||+|++||+.+++.... +.+|.. .|.+++|||||++||
T Consensus 18 ~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~~-------------------~~~~~~~~~~v~~~~~SpDg~~l~ 76 (723)
T 1xfd_A 18 HDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTVL-------------------IEGKKIESLRAIRYEISPDREYAL 76 (723)
T ss_dssp CCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEEE-------------------ECTTTTTTTTCSEEEECTTSSEEE
T ss_pred cccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEEE-------------------eccccccccccceEEECCCCCEEE
Confidence 578899999999 5666 6789999999999986543 444554 499999999999999
Q ss_pred EEeCC---------CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEecc
Q 001386 413 VAYSK---------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1088)
Q Consensus 413 s~~~d---------g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~ 483 (1088)
+++.+ +.+.+||+.+++. +.+....+|...+..++|||||+ .|+.++. +.|++||+.+++.......
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence 99764 7889999999875 22223345656689999999999 5676664 7999999999988766655
Q ss_pred CCccE------------------EEEeeeeeCCceEEEEEecCC----------------------------------eE
Q 001386 484 HGAPV------------------YSLCPHAKENIHFIFSISVDG----------------------------------KI 511 (1088)
Q Consensus 484 ~~~~v------------------~~~~~~~~~~~~~l~s~~~dg----------------------------------~i 511 (1088)
+...+ .+++| ++||+.|++++.|+ .|
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~--SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEE--CCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 44333 56777 56888999887653 79
Q ss_pred EEEECCCCCceEEecCC------CCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccE----
Q 001386 512 KAWLYDSLGARVDYDAP------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV---- 581 (1088)
Q Consensus 512 ~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v---- 581 (1088)
++||+.+.+....+..+ ...+..++|||||+++++..........|++||+.+++....+..+. ...+
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~ 308 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES--EAWLHRQN 308 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC--SSCCCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc--CCEEeccC
Confidence 99999887755555543 45788999999999988776554556789999999998877665432 1223
Q ss_pred EEEEEeCCCCEEEEE--eCCC------cEEEEE-cCCCee--eEEEeCCCCCCCCce-EEEecCCCEEEEEeCC---CcE
Q 001386 582 SVVHFDTAKDQILAA--GDDH------VIKIWD-MNKVQL--LTTIDAGGGLPENPR-ICFNKNGTLLAVIANE---NRI 646 (1088)
Q Consensus 582 ~~~~~~~~~~~l~~~--s~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-v~~s~~~~~l~~~~~d---g~i 646 (1088)
..++|+|||+.|+.. ..++ .|.+|| ..++.. ...+... ...+.. ++|+|||+.|+..+.+ +.+
T Consensus 309 ~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 386 (723)
T 1xfd_A 309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG--DWDVTKILAYDEKGNKIYFLSTEDLPRRR 386 (723)
T ss_dssp CCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS--SSCEEEEEEEETTTTEEEEEESSSCTTCC
T ss_pred CCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC--CeEEEeeeEEcCCCCEEEEEEcCCCCcce
Confidence 378999999987754 4566 567777 344441 3333321 112333 6899999999876665 789
Q ss_pred EEEeCCCCC--ccccccc---ccCcceeeeecCCCcce
Q 001386 647 KILETPESN--SVDAAGV---LSDNLRKLSVNPISTVT 679 (1088)
Q Consensus 647 ~iwd~~~~~--~~~~~~~---~~~~v~~~~~~p~~~~~ 679 (1088)
++|++.... ....+.. +...+..++++|.+..+
T Consensus 387 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l 424 (723)
T 1xfd_A 387 QLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFF 424 (723)
T ss_dssp EEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEE
T ss_pred EEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEE
Confidence 999986432 2333332 45556777777654443
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=6.6e-23 Score=252.85 Aligned_cols=386 Identities=11% Similarity=0.066 Sum_probs=254.8
Q ss_pred ceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC---------Cc
Q 001386 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HV 601 (1088)
Q Consensus 531 ~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---------g~ 601 (1088)
...+++|+|||+++++ +. ++.|++||..+++....+..+......+.+++|+|||++|++++.+ +.
T Consensus 18 ~~~~~~~spdg~~~~~-~~----dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQ----KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CS----SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred cccccEEcCCCcEEEE-eC----CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 3567899999997765 32 4469999999999888887765211248999999999999998764 78
Q ss_pred EEEEEcCCCeeeEEEeCC-CCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCccee
Q 001386 602 IKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 680 (1088)
Q Consensus 602 i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 680 (1088)
+++||+.+++. ..+... .+...+..++|||||+.|+.++. +.|++|+..+++.......+...+
T Consensus 93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~------------- 157 (723)
T 1xfd_A 93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV------------- 157 (723)
T ss_dssp EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT-------------
T ss_pred EEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc-------------
Confidence 88999999876 333322 22234788999999999999886 799999998765443222111100
Q ss_pred ccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccc-cceE
Q 001386 681 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHL 759 (1088)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d-g~v~ 759 (1088)
+..+.. -|-.+ ..-...+.+++|||||+.|+.++.+ +.+.
T Consensus 158 --------------------~~~g~~-----~~v~~--------------ee~~~~~~~~~~SpDg~~la~~~~~~~~~~ 198 (723)
T 1xfd_A 158 --------------------IYNGLS-----DWLYE--------------EEILKTHIAHWWSPDGTRLAYAAINDSRVP 198 (723)
T ss_dssp --------------------EEEEEC-----CHHHH--------------HTTSSSSEEEEECTTSSEEEEEEEECTTSC
T ss_pred --------------------eECccc-----ceeEE--------------EEeccCcceEEECCCCCEEEEEEECCCccc
Confidence 000000 00000 0011245789999999999888764 5677
Q ss_pred EEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCC-
Q 001386 760 MWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP- 838 (1088)
Q Consensus 760 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~- 838 (1088)
+|++..... .+...+..+.++++|.. ..+..|++||+.+++....+..+
T Consensus 199 ~~~~~~~~~---------------------------~~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l~~~~ 248 (723)
T 1xfd_A 199 IMELPTYTG---------------------------SIYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEMMPPD 248 (723)
T ss_dssp EEEECCCSS---------------------------SSSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEECCCCC
T ss_pred eEEeeccCC---------------------------cCCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEeeCCc
Confidence 776542211 02234677888888763 22457999999998866666654
Q ss_pred -----CCCeEEEEEcCCCCcEEEEEeC----CCeEEEEEcCCceeeeeecc-ccCCee----EEEECCCCCEEEE--EeC
Q 001386 839 -----SPTATSLAFNPHDNNVIAIGMD----DSTILIYNARSSEVISKLEG-HSKRVT----GLVFSDALNILVS--SGG 902 (1088)
Q Consensus 839 -----~~~i~~l~~sp~d~~~lasg~~----dg~i~lwd~~~~~~~~~l~~-h~~~V~----~l~~s~dg~~las--~s~ 902 (1088)
...+..++||| ||++|++... +..|++||+.++++...+.. |.+.+. .++|||||+.|+. ...
T Consensus 249 ~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 327 (723)
T 1xfd_A 249 DPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIP 327 (723)
T ss_dssp CGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEEC
T ss_pred cCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecc
Confidence 56789999999 8888877653 35899999999987766654 344443 7899999998775 456
Q ss_pred CC------cEEEEE-cCCCceeeeeeeecCCCCccCCCCeEE-EEEcCCCCEEEE-EeC---CeEEEEEcCcce--eeee
Q 001386 903 DA------QIFVWD-VDGWGIQTCRSLQTPDGVMTLAPSETH-IQFHKDQTRFLL-VHE---THLAIYEAEELT--CLKQ 968 (1088)
Q Consensus 903 Dg------~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~fs~dg~~l~~-~~d---~~i~vwd~~~~~--~~~~ 968 (1088)
++ .|.+|| ..+++... ......++. .+.. ++|+|||+.|+. +.+ +.+++|++.... ....
T Consensus 328 ~~~~~~~~~l~~~d~~~~~~~~~--~~~l~~~~~----~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 401 (723)
T 1xfd_A 328 QGGRGKFYHITVSSSQPNSSNDN--IQSITSGDW----DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQC 401 (723)
T ss_dssp CSSSSCEEEEEEECSSCCSSSCC--CCBSCCSSS----CEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBC
T ss_pred cCCCcceeEEEEEeccCCCCccc--eeEeecCCe----EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcce
Confidence 77 466677 33332000 111112222 2444 699999999987 444 679999986432 2333
Q ss_pred eecC--CCcCEEEEEEeeCCCEEEEEeCC-C--cEEEEEcCCCceEEEe
Q 001386 969 WFPI--SSVPISQATFSCDCRMVFTSFVD-G--TLSIHEASNLEVQCRI 1012 (1088)
Q Consensus 969 ~~~~--h~~~v~~l~fs~dg~~l~s~s~d-g--~v~vwd~~~~~~~~~~ 1012 (1088)
+... |...+..++|||||++|+..... + ...+++..++..+..+
T Consensus 402 l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~~ 450 (723)
T 1xfd_A 402 LSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDL 450 (723)
T ss_dssp SSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred ecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEEe
Confidence 2222 56778899999999998865432 2 3455676666554443
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=1.3e-21 Score=215.99 Aligned_cols=280 Identities=10% Similarity=0.056 Sum_probs=206.0
Q ss_pred eeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeC-CC
Q 001386 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-KH 418 (1088)
Q Consensus 340 v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~-dg 418 (1088)
..|++++.+++++++.++.|.+||+.+++.+.. ...+...+ +++|+|||++|++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 457777887899999999999999999987654 22345566 9999999997777665 88
Q ss_pred EEEEEEccCCCc-ccceeEeccCCCCEEEEEecCCCCcEEEEEEeCC-C--cEEEEeCCCCceeEEeccCCccEEEEeee
Q 001386 419 IVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-K--TIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1088)
Q Consensus 419 ~i~vwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d-~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 494 (1088)
.|.+||+.+++. .. .+..+..+..+++|+|||+ +++++..+ + .|.+||+.+++.+..+..+ .....++|+
T Consensus 63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 999999999875 33 4556666665599999999 56655544 3 8999999999988887654 445788885
Q ss_pred eeCCceEE-EEEecCCe-EEEEECCCCCceE----EecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCce-
Q 001386 495 AKENIHFI-FSISVDGK-IKAWLYDSLGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI- 567 (1088)
Q Consensus 495 ~~~~~~~l-~s~~~dg~-i~iwd~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~- 567 (1088)
++|+++ ++...++. |.+|+++...... ...........++|+|+|++++++.. .++.|.+||+.+++.
T Consensus 137 --pdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~ 211 (331)
T 3u4y_A 137 --PNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENI 211 (331)
T ss_dssp --TTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSC
T ss_pred --CCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCccc
Confidence 466544 45556688 9999998655432 22234456789999999998877653 356799999999988
Q ss_pred --eEEEeccccccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCee--eEEEeCC----CC-CCCCceEEEecCCCEE
Q 001386 568 --KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQL--LTTIDAG----GG-LPENPRICFNKNGTLL 637 (1088)
Q Consensus 568 --~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~--~~~~~~~----~~-~~~v~~v~~s~~~~~l 637 (1088)
+..+... ..+..++|+|+|+++++++ .++.|.+||..+++. +..+... .. ......++|+|||++|
T Consensus 212 ~~~~~~~~~----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 287 (331)
T 3u4y_A 212 TLLNAVGTN----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKL 287 (331)
T ss_dssp EEEEEEECS----SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEE
T ss_pred ceeeeccCC----CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEE
Confidence 6666643 4677899999999877665 578899999999887 4444322 11 1112458999999988
Q ss_pred EEEeC-CCcEEEEeCCCC
Q 001386 638 AVIAN-ENRIKILETPES 654 (1088)
Q Consensus 638 ~~~~~-dg~i~iwd~~~~ 654 (1088)
++++. ++.|.+||+...
T Consensus 288 ~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 288 FISANISRELKVFTISGK 305 (331)
T ss_dssp EEEETTTTEEEEEETTSC
T ss_pred EEecCCCCcEEEEEecCC
Confidence 76655 569999999864
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=2.6e-21 Score=237.62 Aligned_cols=238 Identities=9% Similarity=-0.003 Sum_probs=167.0
Q ss_pred eEEEEECCCCCEEEEEeCCCEEEEEEccCCCcc-cceeEeccCC-----------------CCEEEEEecCCCCcEEEEE
Q 001386 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHV-----------------GNVNDLAFSAPCKQISVIT 460 (1088)
Q Consensus 399 V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~-~~~~~~~~h~-----------------~~v~~~~~s~d~~~l~l~s 460 (1088)
+..+.|+ |+.+++++.++ | +||+.+|+.+ .. +..|. ..|.+++|+|| + .++.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~---l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~--~~~~ 97 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT---RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G--LVVL 97 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CE---EEEHHHHHTTC-----------CCCEEEEETTT-T--EEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE---eechhHhhhhccchhccccccccCceeEEECCC-C--eEEE
Confidence 4457788 66777777888 8 9999999763 32 22222 56999999999 5 3443
Q ss_pred EeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCC-----CCceEEecCCCCc----
Q 001386 461 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-----LGARVDYDAPGLG---- 531 (1088)
Q Consensus 461 ~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~---- 531 (1088)
+ .++.|++||+.+++... +..+...+.+++| ++||+.|+++ .++.|++||+.+ ++...........
T Consensus 98 ~-~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~--SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g 172 (706)
T 2z3z_A 98 F-TQGGLVGFDMLARKVTY-LFDTNEETASLDF--SPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG 172 (706)
T ss_dssp E-ETTEEEEEETTTTEEEE-EECCTTCCTTCEE--CTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEES
T ss_pred E-ECCEEEEEECCCCceEE-ccCCcccccCCcC--CCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcc
Confidence 3 36999999999887654 4446667777888 5577888884 789999999988 6655433333332
Q ss_pred ----------eEEEEEccCCCEEEEEeeCC-----------------------------CCceeEEEEeCCCCceeEEEe
Q 001386 532 ----------CTRMAYSANGRRLFSCGTSK-----------------------------EGESFLVEWNESEGAIKRTYQ 572 (1088)
Q Consensus 532 ----------v~~~~~s~~g~~l~~~~~~~-----------------------------~~~~~i~iwd~~~~~~~~~~~ 572 (1088)
+.+++|||||++|++++.+. ..+..|++||+.+++......
T Consensus 173 ~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~ 252 (706)
T 2z3z_A 173 QAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT 252 (706)
T ss_dssp SCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred cchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence 47899999999999987321 245789999999987655443
Q ss_pred ccccccccEEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCCeeeEEEe-CC--CCCCCCceEEEec--CCCEEEEEeC
Q 001386 573 GLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTID-AG--GGLPENPRICFNK--NGTLLAVIAN 642 (1088)
Q Consensus 573 ~~~~~~~~v~~~~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~~~~~-~~--~~~~~v~~v~~s~--~~~~l~~~~~ 642 (1088)
.. .+...+..++|+|||+++++++.++ .|++||+.+++....+. .. .....+..++|+| ||++++++..
T Consensus 253 ~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~ 331 (706)
T 2z3z_A 253 GE-PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR 331 (706)
T ss_dssp CS-CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECT
T ss_pred CC-CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEcc
Confidence 21 1236789999999999999987765 89999999984333332 11 1111246789999 9998888888
Q ss_pred CCcEEEEeCC
Q 001386 643 ENRIKILETP 652 (1088)
Q Consensus 643 dg~i~iwd~~ 652 (1088)
++.+++|.+.
T Consensus 332 ~g~~~l~~~~ 341 (706)
T 2z3z_A 332 DGWNHLYLYD 341 (706)
T ss_dssp TSSCEEEEEE
T ss_pred CCccEEEEEE
Confidence 8888888654
No 139
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=4.1e-21 Score=214.12 Aligned_cols=274 Identities=11% Similarity=0.085 Sum_probs=212.7
Q ss_pred CCceeeeecCCCCeEEEEEcc------cCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCC
Q 001386 335 SSPMSMDFHPVQHTLLLVGTN------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~------dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg 408 (1088)
..+..++|+|||++++++... ++.|.+||..+++.+.... ....+..++|+|||
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------~~~~~~~~~~s~dg 100 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------NDLKPFGATINNTT 100 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------ESSCCCSEEEETTT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------cCCCcceEEECCCC
Confidence 478899999999965555433 6789999999998775422 23447789999999
Q ss_pred CEEEEE-eCCCEEEEEEccCCCcccceeEeccCCC---------CEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001386 409 SLLGVA-YSKHIVQLYAYHGGSDARQQLEIDAHVG---------NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1088)
Q Consensus 409 ~~las~-~~dg~i~vwd~~~~~~~~~~~~~~~h~~---------~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~ 478 (1088)
++++++ ..++.|.+||..+++.+. .+..+.. .+.+++|+|+++.+++...+.++.|.+||+.+++.+
T Consensus 101 ~~l~v~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~ 177 (353)
T 3vgz_A 101 QTLWFGNTVNSAVTAIDAKTGEVKG---RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK 177 (353)
T ss_dssp TEEEEEETTTTEEEEEETTTCCEEE---EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE
T ss_pred CEEEEEecCCCEEEEEeCCCCeeEE---EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE
Confidence 966655 457899999999987655 3333322 278899999999532222245889999999999999
Q ss_pred EEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecC----CCCceEEEEEccCCCEEEEEeeCCCCc
Q 001386 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1088)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~g~~l~~~~~~~~~~ 554 (1088)
..+..+...+..++| +++++++++++.++.|.+||+.+.+....+.. +...+..++|+|+|++++++.. .+
T Consensus 178 ~~~~~~~~~~~~~~~--s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~ 252 (353)
T 3vgz_A 178 TAIQNTGKMSTGLAL--DSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS---KA 252 (353)
T ss_dssp EEECCCCTTCCCCEE--ETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES---SS
T ss_pred EEecCCCCccceEEE--CCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC---CC
Confidence 888766666777777 55778899999999999999998887766554 3446788999999998887763 35
Q ss_pred eeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecC
Q 001386 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1088)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1088)
+.|.+||..+++.+..+.... ...++|+|+++++++++ .++.|.+||..+++.+..+.... .+.+++|+|+
T Consensus 253 ~~v~~~d~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~d 324 (353)
T 3vgz_A 253 AEVLVVDTRNGNILAKVAAPE-----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLALSAD 324 (353)
T ss_dssp SEEEEEETTTCCEEEEEECSS-----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEECTT
T ss_pred CEEEEEECCCCcEEEEEEcCC-----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEEcCC
Confidence 679999999999888887543 25689999999776665 68999999999999998887643 3688999999
Q ss_pred CCEEEEEeCCC
Q 001386 634 GTLLAVIANEN 644 (1088)
Q Consensus 634 ~~~l~~~~~dg 644 (1088)
|++++++..++
T Consensus 325 g~~l~v~~~~~ 335 (353)
T 3vgz_A 325 GKTLYVSVKQK 335 (353)
T ss_dssp SCEEEEEEECC
T ss_pred CCEEEEEEccc
Confidence 99887776653
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=1.7e-21 Score=239.29 Aligned_cols=243 Identities=11% Similarity=0.089 Sum_probs=171.3
Q ss_pred CeeEEEEecCCCEEEEEeCCcEEEEEcCC-----ceeEEEecCCCCC--------------eEEEEEcCCCCcEEEEEe-
Q 001386 800 AVPCFALSKNDAYLFSASGGVISLYIVMT-----FKTILTIMPPSPT--------------ATSLAFNPHDNNVIAIGM- 859 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~--------------i~~l~~sp~d~~~lasg~- 859 (1088)
.+.+++|||||+.|+++.++.|++||+.+ ++.......+... +.+++||| ||++|++++
T Consensus 122 ~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~ 200 (706)
T 2z3z_A 122 ETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRM 200 (706)
T ss_dssp CCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEE
T ss_pred cccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEE
Confidence 34556788888888887788888888887 6665544433332 48899999 899999887
Q ss_pred --------------------------------CCCeEEEEEcCCceeeeeec--cccCCeeEEEECCCCCEEEEEeCCC-
Q 001386 860 --------------------------------DDSTILIYNARSSEVISKLE--GHSKRVTGLVFSDALNILVSSGGDA- 904 (1088)
Q Consensus 860 --------------------------------~dg~i~lwd~~~~~~~~~l~--~h~~~V~~l~~s~dg~~las~s~Dg- 904 (1088)
.++.|++||+.+++...... .|...+.+++|||||++|++++.|+
T Consensus 201 d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 280 (706)
T 2z3z_A 201 DQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRA 280 (706)
T ss_dssp ECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTT
T ss_pred CCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCC
Confidence 45789999999988654442 4777899999999999999988775
Q ss_pred ----cEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcC--CCCEEEEE-eCCeEEEEEcC-cceeeeeeecCCCcC
Q 001386 905 ----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK--DQTRFLLV-HETHLAIYEAE-ELTCLKQWFPISSVP 976 (1088)
Q Consensus 905 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~--dg~~l~~~-~d~~i~vwd~~-~~~~~~~~~~~h~~~ 976 (1088)
.|++||+.+++.............. ..+..++|+| ||++++++ .++.+++|++. ++..+..+ ..|...
T Consensus 281 ~~~~~v~~~d~~~g~~~~~~~~~~~~~~~---~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l-~~~~~~ 356 (706)
T 2z3z_A 281 QNECKVNAYDAETGRFVRTLFVETDKHYV---EPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV-TKGEWE 356 (706)
T ss_dssp SCEEEEEEEETTTCCEEEEEEEEECSSCC---CCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEEC-CCSSSC
T ss_pred CCeeEEEEEECCCCceeeEEEEccCCCeE---CccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEec-CCCCeE
Confidence 8999999987322111111111111 1246789999 99988875 56778888876 56666554 456677
Q ss_pred EEE-EEEeeCCCEEEEEeCC-C----cEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCC--
Q 001386 977 ISQ-ATFSCDCRMVFTSFVD-G----TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-- 1048 (1088)
Q Consensus 977 v~~-l~fs~dg~~l~s~s~d-g----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~d-- 1048 (1088)
+.. ++|+|||+.|++++.+ + .|..||+.++... .+. +. . ....++|+| ||+.+++++.+
T Consensus 357 v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~-~l~------~~---~--~~~~~~~sp-dg~~l~~~~~~~~ 423 (706)
T 2z3z_A 357 VTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK-DLT------PE---S--GMHRTQLSP-DGSAIIDIFQSPT 423 (706)
T ss_dssp EEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE-ESC------CS---S--SEEEEEECT-TSSEEEEEEECSS
T ss_pred EEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce-ecc------CC---C--ceEEEEECC-CCCEEEEEecCCC
Confidence 776 7999999988766654 3 6777787777632 221 11 1 134689999 78888877554
Q ss_pred --CcEEEEeCCCCC
Q 001386 1049 --GEVYVIEPNEPG 1060 (1088)
Q Consensus 1049 --g~v~~w~l~~~~ 1060 (1088)
+.|++|++....
T Consensus 424 ~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 424 VPRKVTVTNIGKGS 437 (706)
T ss_dssp CSCEEEEEESSSCE
T ss_pred CCcEEEEEECCCCe
Confidence 469999996654
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=1.9e-20 Score=207.78 Aligned_cols=276 Identities=14% Similarity=0.156 Sum_probs=193.4
Q ss_pred CCeEEEEEcccCcEEEEecCC-CcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCC-CEEEEE
Q 001386 346 QHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK-HIVQLY 423 (1088)
Q Consensus 346 g~~lla~g~~dg~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~d-g~i~vw 423 (1088)
+++++++++.|+.|.+||+.. ++..... ...|...+.+++|+|||++|++++.+ +.|.+|
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~ 65 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLTQ------------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 65 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEE------------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEee------------------eEecCCCCceEEECCCCCEEEEeecCCCeEEEE
Confidence 344666768899999999963 3322110 12367789999999999999998886 899999
Q ss_pred Ecc--CCCcccceeEeccCCCCEEEEEecCCCCcEEEEEE-eCCCcEEEEeCC---CCceeEEeccCCccEEEEeeeeeC
Q 001386 424 AYH--GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-GDDKTIKVWDAV---TGSRTYSFEGHGAPVYSLCPHAKE 497 (1088)
Q Consensus 424 d~~--~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~-s~d~~i~vwd~~---~~~~~~~~~~~~~~v~~~~~~~~~ 497 (1088)
++. +++. .....+..+. .+..++|+|+++ .++++ ..++.|.+||+. +++.+..+..+ ..+.+++| ++
T Consensus 66 ~~~~~~~~~-~~~~~~~~~~-~~~~~~~s~dg~--~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~--s~ 138 (343)
T 1ri6_A 66 RIAPDDGAL-TFAAESALPG-SLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANI--SP 138 (343)
T ss_dssp EECTTTCCE-EEEEEEECSS-CCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEE--CT
T ss_pred EecCCCCce-eeccccccCC-CCcEEEEcCCCC--EEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEE--CC
Confidence 998 5542 2232344443 789999999999 45444 458899999994 34455555543 35777777 45
Q ss_pred CceEEEEEe-cCCeEEEEECCC-CCceE----Eec-CCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC--CCce-
Q 001386 498 NIHFIFSIS-VDGKIKAWLYDS-LGARV----DYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAI- 567 (1088)
Q Consensus 498 ~~~~l~s~~-~dg~i~iwd~~~-~~~~~----~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~--~~~~- 567 (1088)
+++++++++ .++.|.+||+.+ +.... ... .....+..++|+|+|+++++++. .++.|.+|++. +++.
T Consensus 139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~ 215 (343)
T 1ri6_A 139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIE 215 (343)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCE
T ss_pred CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEE
Confidence 677777777 899999999987 43321 222 23457888999999998877652 25679999995 3443
Q ss_pred -eEEEeccc---cccccEEEEEEeCCCCEEEEE-eCCCcEEEEEcC--C--CeeeEEEeCCCCCCCCceEEEecCCCEEE
Q 001386 568 -KRTYQGLQ---LQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMN--K--VQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1088)
Q Consensus 568 -~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~--~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1088)
........ .....+..++|+|++++++++ ..++.|.+|++. + .+.+..+..+. .+..++|+|+|++|+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~ 292 (343)
T 1ri6_A 216 CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLI 292 (343)
T ss_dssp EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEE
T ss_pred EEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEE
Confidence 22332111 112356789999999988854 478999999998 3 34444554432 278899999999888
Q ss_pred EEe-CCCcEEEEeCC
Q 001386 639 VIA-NENRIKILETP 652 (1088)
Q Consensus 639 ~~~-~dg~i~iwd~~ 652 (1088)
+++ .++.+.+|++.
T Consensus 293 ~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 293 AAGQKSHHISVYEIV 307 (343)
T ss_dssp EECTTTCEEEEEEEE
T ss_pred EecCCCCeEEEEEEc
Confidence 888 57999999554
No 142
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=2.3e-20 Score=205.95 Aligned_cols=285 Identities=11% Similarity=0.043 Sum_probs=198.4
Q ss_pred EEecCCce-EEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe--
Q 001386 741 TYNNGGQA-IFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-- 817 (1088)
Q Consensus 741 ~~s~~g~~-l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-- 817 (1088)
.|.+++.. +++...++.|.+||...+.. ...... +...+ .++|+|+|+++++++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~------------------~~~~~~----~~~~~-~~~~s~dg~~l~~~~~~ 60 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEI------------------LNQITL----GYDFV-DTAITSDCSNVVVTSDF 60 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCE------------------EEEEEC----CCCEE-EEEECSSSCEEEEEEST
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccce------------------eeeEEc----cCCcc-eEEEcCCCCEEEEEeCC
Confidence 45555555 56667789999998654432 222221 34445 999999999777765
Q ss_pred CCcEEEEEcCCcee-EEEecCCCCCeEEEEEcCCCCcEEEEEeCCC---eEEEEEcCCceeeeeeccccCCeeEEEECCC
Q 001386 818 GGVISLYIVMTFKT-ILTIMPPSPTATSLAFNPHDNNVIAIGMDDS---TILIYNARSSEVISKLEGHSKRVTGLVFSDA 893 (1088)
Q Consensus 818 dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg---~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~d 893 (1088)
++.|.+||..+++. ...+..+.....+++|+| ++++++++..++ .|.+||+.+++.+..+..+ ....+++|+||
T Consensus 61 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spd 138 (331)
T 3u4y_A 61 CQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPN 138 (331)
T ss_dssp TCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTT
T ss_pred CCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCC
Confidence 67899999999987 777776666665699999 888888655553 8999999999988887754 44689999999
Q ss_pred CCEEEEE-eCCCc-EEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE--eCCeEEEEEcCccee---e
Q 001386 894 LNILVSS-GGDAQ-IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTC---L 966 (1088)
Q Consensus 894 g~~las~-s~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~--~d~~i~vwd~~~~~~---~ 966 (1088)
|++|+++ ..++. |.+|++................. ..+..++|+|||++++++ .++.|++||+.+++. +
T Consensus 139 g~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~ 214 (331)
T 3u4y_A 139 GNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGG----TRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLL 214 (331)
T ss_dssp SSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSS----SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEE
T ss_pred CCEEEEEecCCCceEEEEEECCCCcEeecCCccccCC----CCccceEECCCCCEEEEEeCCCCeEEEEECCCCccccee
Confidence 9865544 56688 99999986432211111111111 247899999999977664 468899999999987 6
Q ss_pred eeeecCCCcCEEEEEEeeCCCEEEEEe-CCCcEEEEEcCCCce--EEEeccccccCCCCcccccc-ceEEEECCCCCCEE
Q 001386 967 KQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEASNLEV--QCRILSTAYLRPTTSCLHVY-PHAIAAHPLKPTQF 1042 (1088)
Q Consensus 967 ~~~~~~h~~~v~~l~fs~dg~~l~s~s-~dg~v~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~d~~~l 1042 (1088)
..+. +...+..++|+|||++|++++ .++.|.+||+.+++. +..+... .... ..... ...++|+| |++.|
T Consensus 215 ~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~sp-dg~~l 287 (331)
T 3u4y_A 215 NAVG--TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHG--LLID--PRPLFGANQMALNK-TETKL 287 (331)
T ss_dssp EEEE--CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECC--CCCC--CGGGTTCCCEEECT-TSSEE
T ss_pred eecc--CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccc--cccC--CCCcccccceEECC-CCCEE
Confidence 6544 246678899999999877665 578899999999987 3332211 0000 11111 14579999 77877
Q ss_pred EEEe-CCCcEEEEeCCCCCC
Q 001386 1043 AVGL-TNGEVYVIEPNEPGD 1061 (1088)
Q Consensus 1043 ~~~~-~dg~v~~w~l~~~~~ 1061 (1088)
++++ .++.|.+|++.....
T Consensus 288 ~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 288 FISANISRELKVFTISGKVV 307 (331)
T ss_dssp EEEETTTTEEEEEETTSCEE
T ss_pred EEecCCCCcEEEEEecCCcc
Confidence 6555 566999999976553
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.88 E-value=6.6e-20 Score=204.35 Aligned_cols=273 Identities=12% Similarity=0.130 Sum_probs=207.7
Q ss_pred cccEEEEEEecCCceEEEecc-------ccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEE
Q 001386 734 ANKISRLTYNNGGQAIFALAS-------NGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 806 (1088)
Q Consensus 734 ~~~i~~~~~s~~g~~l~~~~~-------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 806 (1088)
...+..++++|+|+.+++++. ++.+.+||... +........ ...+..+++
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~------------------~~~~~~~~~-----~~~~~~~~~ 96 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT------------------LEVTQAIHN-----DLKPFGATI 96 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTT------------------CCEEEEEEE-----SSCCCSEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC------------------CeEEEEEec-----CCCcceEEE
Confidence 356788999999998887774 45677776543 332333222 234678999
Q ss_pred ecCCCEEEEEe--CCcEEEEEcCCceeEEEecCCCCC---------eEEEEEcCCCCcEEEEEe--CCCeEEEEEcCCce
Q 001386 807 SKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPT---------ATSLAFNPHDNNVIAIGM--DDSTILIYNARSSE 873 (1088)
Q Consensus 807 s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~---------i~~l~~sp~d~~~lasg~--~dg~i~lwd~~~~~ 873 (1088)
+|+|++++++. ++.|.+||..+++.+..+..+... +.+++|+| +++++++++ .++.|.+||..+++
T Consensus 97 s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~ 175 (353)
T 3vgz_A 97 NNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIK 175 (353)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTE
T ss_pred CCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCc
Confidence 99999776665 689999999999988887765432 78899999 777666665 47899999999999
Q ss_pred eeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE--e
Q 001386 874 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--H 951 (1088)
Q Consensus 874 ~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~--~ 951 (1088)
.+..+..+...+.+++|+|||++|++++.++.|.+||+.+++........ ..++. ..+..++|+|||++++++ .
T Consensus 176 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~---~~~~~~~~s~dg~~l~~~~~~ 251 (353)
T 3vgz_A 176 LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLL-DDGKE---HFFINISLDTARQRAFITDSK 251 (353)
T ss_dssp EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECC-CSSSC---CCEEEEEEETTTTEEEEEESS
T ss_pred eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcC-CCCCC---cccceEEECCCCCEEEEEeCC
Confidence 99888866667899999999999999999999999999987643322211 11111 257889999999988774 3
Q ss_pred CCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEe-CCCcEEEEEcCCCceEEEeccccccCCCCccccccce
Q 001386 952 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1030 (1088)
Q Consensus 952 d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1030 (1088)
++.|.+||..+++.+..+..++ ...++|+|||++++++. .++.|.+||+.+++.+..+... ..+.
T Consensus 252 ~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-----------~~~~ 317 (353)
T 3vgz_A 252 AAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-----------THPN 317 (353)
T ss_dssp SSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-----------SEEE
T ss_pred CCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-----------CCCC
Confidence 4799999999999887765443 25689999999776665 6899999999999988776521 2457
Q ss_pred EEEECCCCCCEEEEEeCCC
Q 001386 1031 AIAAHPLKPTQFAVGLTNG 1049 (1088)
Q Consensus 1031 ~~~~~p~d~~~l~~~~~dg 1049 (1088)
.++|+| ||+.|+++..++
T Consensus 318 ~~~~s~-dg~~l~v~~~~~ 335 (353)
T 3vgz_A 318 SLALSA-DGKTLYVSVKQK 335 (353)
T ss_dssp EEEECT-TSCEEEEEEECC
T ss_pred eEEEcC-CCCEEEEEEccc
Confidence 799999 788777776664
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=2.2e-20 Score=206.69 Aligned_cols=281 Identities=13% Similarity=0.088 Sum_probs=205.5
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEE-EEeCCCcEEEEeCCCCCcccccccccCccee
Q 001386 591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESNSVDAAGVLSDNLRK 669 (1088)
Q Consensus 591 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 669 (1088)
+++++++.++.|++||..+++.+..+........+..++|+|+|+.++ ++..++.|.+||..+++....+...
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~------ 75 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS------ 75 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC------
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcC------
Confidence 478889999999999999999998887543110267899999997665 4555789999998765433211100
Q ss_pred eeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceE
Q 001386 670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 749 (1088)
Q Consensus 670 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 749 (1088)
..+
T Consensus 76 --------------------------------------------------------------------------~~~--- 78 (337)
T 1pby_B 76 --------------------------------------------------------------------------TPE--- 78 (337)
T ss_dssp --------------------------------------------------------------------------BTT---
T ss_pred --------------------------------------------------------------------------Ccc---
Confidence 000
Q ss_pred EEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEE-------------
Q 001386 750 FALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA------------- 816 (1088)
Q Consensus 750 ~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~------------- 816 (1088)
.+...+.+++++|+|++++++
T Consensus 79 ----------------------------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 112 (337)
T 1pby_B 79 ----------------------------------------------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV 112 (337)
T ss_dssp ----------------------------------------------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred ----------------------------------------------cccccccceEECCCCCEEEEEecccccccccccc
Confidence 000112345666666666655
Q ss_pred eCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCE
Q 001386 817 SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNI 896 (1088)
Q Consensus 817 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~ 896 (1088)
.++.|.+||+.+++.+..+.. ...+.+++|+| ++++|+++ ++.|++||+.+++.+..+..+... ..+.|+|||+.
T Consensus 113 ~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~ 187 (337)
T 1pby_B 113 QPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLA 187 (337)
T ss_dssp CCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCC
T ss_pred cCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccE
Confidence 358899999999988877764 45678899999 78878777 689999999999988777654411 12378999987
Q ss_pred EEEEeCCC------------------------cEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeC
Q 001386 897 LVSSGGDA------------------------QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 952 (1088)
Q Consensus 897 las~s~Dg------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d 952 (1088)
|+..+.++ .|.+||+.+++.. ...+.. +. ..+.+++|+|||++++++ +
T Consensus 188 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~---~~---~~~~~~~~s~dg~~l~~~-~ 259 (337)
T 1pby_B 188 VWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRI---MD---VFYFSTAVNPAKTRAFGA-Y 259 (337)
T ss_dssp CCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEE---CS---SCEEEEEECTTSSEEEEE-E
T ss_pred EeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCC---CC---CceeeEEECCCCCEEEEe-C
Confidence 76554332 4689999987654 111111 11 247789999999999988 7
Q ss_pred CeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccc
Q 001386 953 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1015 (1088)
Q Consensus 953 ~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 1015 (1088)
+.|++||+.+++.+..+.. ...+.+++|+|||++|++++.++.|.+||+.+++.+..+...
T Consensus 260 ~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 260 NVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp SEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred CeEEEEECCCCcCcceecC--CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 9999999999988876543 346789999999999999999999999999999998887643
No 145
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=4.6e-20 Score=204.66 Aligned_cols=275 Identities=11% Similarity=0.120 Sum_probs=190.3
Q ss_pred EEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-C-CcEEEEEc
Q 001386 749 IFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-G-GVISLYIV 826 (1088)
Q Consensus 749 l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-d-g~i~iwd~ 826 (1088)
+++.+.++.|++|++.... ........ .+...+.+++|+|+|+++++++ + +.|.+|++
T Consensus 8 ~~~~~~~~~v~~~~~~~~~-----------------~~~~~~~~---~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~ 67 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEG-----------------ALTLTQVV---DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI 67 (343)
T ss_dssp EEEEGGGTEEEEEEECTTS-----------------CEEEEEEE---ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EEeCCCCCeEEEEEECCCC-----------------cEEEeeeE---ecCCCCceEEECCCCCEEEEeecCCCeEEEEEe
Confidence 3444779999999975311 10011111 2556788899999999888887 3 89999999
Q ss_pred C--Cce--eEEEecCCCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEEc---CCceeeeeeccccCCeeEEEECCCCCEEE
Q 001386 827 M--TFK--TILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNA---RSSEVISKLEGHSKRVTGLVFSDALNILV 898 (1088)
Q Consensus 827 ~--~~~--~~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~i~lwd~---~~~~~~~~l~~h~~~V~~l~~s~dg~~la 898 (1088)
. +++ .+..+..+. .+..++|+| ++++|++++ .++.|.+||+ .+++.+..+..+. .+.+++|+|||++|+
T Consensus 68 ~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~ 144 (343)
T 1ri6_A 68 APDDGALTFAAESALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD-GCHSANISPDNRTLW 144 (343)
T ss_dssp CTTTCCEEEEEEEECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT-TBCCCEECTTSSEEE
T ss_pred cCCCCceeeccccccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEECCCCccccccccccCCC-CceEEEECCCCCEEE
Confidence 7 544 344555444 788999999 788776655 4889999999 4455556665444 588999999999888
Q ss_pred EEe-CCCcEEEEEcCC-Cceeeee--eeecCCCCccCCCCeEEEEEcCCCCEEEEE--eCCeEEEEEcCc--cee--eee
Q 001386 899 SSG-GDAQIFVWDVDG-WGIQTCR--SLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEE--LTC--LKQ 968 (1088)
Q Consensus 899 s~s-~Dg~i~iwd~~~-~~~~~~~--~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~--~d~~i~vwd~~~--~~~--~~~ 968 (1088)
+++ .++.|++||+.+ ++..... ......+ ..+..++|+|||++++++ .++.|.+|++.. ++. ...
T Consensus 145 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~ 219 (343)
T 1ri6_A 145 VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG-----AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQT 219 (343)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT-----CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEE
T ss_pred EecCCCCEEEEEEecCCCceeeecccccccCCC-----CCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEee
Confidence 887 899999999987 5433222 2222222 257889999999988763 578999999953 432 212
Q ss_pred ee---cCC--CcCEEEEEEeeCCCEEEEEe-CCCcEEEEEcC--CC--ceEEEeccccccCCCCccccccceEEEECCCC
Q 001386 969 WF---PIS--SVPISQATFSCDCRMVFTSF-VDGTLSIHEAS--NL--EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1038 (1088)
Q Consensus 969 ~~---~~h--~~~v~~l~fs~dg~~l~s~s-~dg~v~vwd~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d 1038 (1088)
.. .++ ...+..++|+|||++|+++. .++.|.+|++. ++ +.+..+... ..+..++|+| |
T Consensus 220 ~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-----------~~~~~~~~s~-d 287 (343)
T 1ri6_A 220 LDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE-----------TQPRGFNVDH-S 287 (343)
T ss_dssp EECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS-----------SSCCCEEECT-T
T ss_pred ccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC-----------CccceEEECC-C
Confidence 11 111 34677899999999887554 78999999998 33 333333211 1145689999 7
Q ss_pred CCEEEEEe-CCCcEEEEeCCCCCCCc
Q 001386 1039 PTQFAVGL-TNGEVYVIEPNEPGDTW 1063 (1088)
Q Consensus 1039 ~~~l~~~~-~dg~v~~w~l~~~~~~~ 1063 (1088)
++.|++++ .|+.|.+|++.....++
T Consensus 288 g~~l~~~~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 288 GKYLIAAGQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp SSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred CCEEEEecCCCCeEEEEEEcCCCcee
Confidence 88888887 68999999776544444
No 146
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=9.6e-21 Score=205.13 Aligned_cols=257 Identities=14% Similarity=0.120 Sum_probs=188.0
Q ss_pred EEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccC-CCc
Q 001386 352 VGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG-GSD 430 (1088)
Q Consensus 352 ~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~-~~~ 430 (1088)
.++.|++|++||+.+++... +..|...|.+++|+|||++|++++ ++.|++||+.+ ++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 44578999999999887553 334788999999999999999986 78999999998 765
Q ss_pred ccceeEeccC-CCCEEEEEecCCCCcEEEEEEe--CCCcEEEE--eCCCCceeEEeccCCccEEEEeeeeeCCceEEE-E
Q 001386 431 ARQQLEIDAH-VGNVNDLAFSAPCKQISVITCG--DDKTIKVW--DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-S 504 (1088)
Q Consensus 431 ~~~~~~~~~h-~~~v~~~~~s~d~~~l~l~s~s--~d~~i~vw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s 504 (1088)
.. ....| ...+.+++|+||++ .+++++ .++...|| |+.+++ ...+..+. .+..++|+ ++++.++ +
T Consensus 76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~s--pdg~~l~~~ 146 (297)
T 2ojh_A 76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWS--PDGKSFTYC 146 (297)
T ss_dssp EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEEC--TTSSEEEEE
T ss_pred eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEEC--CCCCEEEEE
Confidence 43 23344 46789999999999 677777 33455555 445554 44554443 47778884 4666666 7
Q ss_pred EecCCeEEEEECCCC-CceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC-CCceeEEEeccccccccEE
Q 001386 505 ISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVS 582 (1088)
Q Consensus 505 ~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~ 582 (1088)
++.++.+++|+++.. .....+..+...+.+++|+|+|+.+++++.. ++.+.+|+.. .+.....+..+. ..+.
T Consensus 147 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~---~~~~ 220 (297)
T 2ojh_A 147 GIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSR---TGQMQIWRVRVDGSSVERITDSA---YGDW 220 (297)
T ss_dssp EEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECT---TSSCEEEEEETTSSCEEECCCCS---EEEE
T ss_pred ECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecC---CCCccEEEECCCCCCcEEEecCC---cccC
Confidence 889999999997543 3445556667789999999999998877631 2346666654 444556666655 6789
Q ss_pred EEEEeCCCCEEEEEeCC-----------CcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCC
Q 001386 583 VVHFDTAKDQILAAGDD-----------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1088)
Q Consensus 583 ~~~~~~~~~~l~~~s~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1088)
.++|+|++++|++++.+ +.|++||+.+++.........+...+..++|+|+++.|++++.+.
T Consensus 221 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 221 FPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99999999999988765 569999999887644443222233588899999999998887653
No 147
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=2.5e-20 Score=206.18 Aligned_cols=278 Identities=10% Similarity=0.059 Sum_probs=206.1
Q ss_pred EEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCC-CeEEEEECCCCCEEEE-EeCCCEEEEEEcc
Q 001386 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-SVNRVVWSPDGSLLGV-AYSKHIVQLYAYH 426 (1088)
Q Consensus 349 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~-~V~~l~~s~dg~~las-~~~dg~i~vwd~~ 426 (1088)
++++++.+++|.+||+.+++.+.... .++.. .+..++|+|||+++++ ++.++.|.+||+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVIT------------------IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEE------------------CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEE------------------cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 68889999999999999998765421 12222 4788999999987654 4567899999999
Q ss_pred CCCcccceeEecc---CCCCEEEEEecCCCCcEEEEEEe------------CCCcEEEEeCCCCceeEEeccCCccEEEE
Q 001386 427 GGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCG------------DDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1088)
Q Consensus 427 ~~~~~~~~~~~~~---h~~~v~~~~~s~d~~~l~l~s~s------------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 491 (1088)
+++.+..+ .... |...+..++|+|||+ .+++++ .++.|.+||+.+++.+..+.. ...+..+
T Consensus 65 ~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 65 TGETLGRI-DLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp TCCEEEEE-ECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred CCCeEeeE-EcCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 98765432 1111 123577899999999 555554 579999999999988877764 4456677
Q ss_pred eeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCc-----------------
Q 001386 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE----------------- 554 (1088)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~----------------- 554 (1088)
+| ++++++++++ ++.|.+||+.+.+....+...... ..+.|+|+|+.++..+... +.
T Consensus 141 ~~--s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~ 214 (337)
T 1pby_B 141 AW--ARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESS-GVMATPFYTARKDIDPADP 214 (337)
T ss_dssp EE--CTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTT-TEEEEEEEEEBTTSCTTSG
T ss_pred EE--CCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCC-Cceeeeeeccccccccccc
Confidence 77 5577777777 689999999988776655544311 1237899998776554211 11
Q ss_pred ----eeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEE
Q 001386 555 ----SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1088)
Q Consensus 555 ----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1088)
..|.+||..+++.. .+.... +...+..++|+|++++++++ ++.|.+||+.+++.+..+.... .+.+++|
T Consensus 215 ~~~~~~v~~~d~~~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~ 287 (337)
T 1pby_B 215 TAYRTGLLTMDLETGEMA-MREVRI-MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVNV 287 (337)
T ss_dssp GGEEEEEEEEETTTCCEE-EEEEEE-CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEEE
T ss_pred cccccceEEEeCCCCCce-EeecCC-CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEEE
Confidence 14799999998875 322211 22568889999999999988 7999999999999888887543 3689999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCCcccccc
Q 001386 631 NKNGTLLAVIANENRIKILETPESNSVDAAG 661 (1088)
Q Consensus 631 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 661 (1088)
+|+|+++++++.++.|.+||+.+++.+..+.
T Consensus 288 s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 288 STDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp CTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred CCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 9999999999999999999999887766554
No 148
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.86 E-value=7.3e-21 Score=234.05 Aligned_cols=378 Identities=12% Similarity=0.038 Sum_probs=244.3
Q ss_pred EEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeC---------CCcEEE
Q 001386 534 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---------DHVIKI 604 (1088)
Q Consensus 534 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---------dg~i~i 604 (1088)
+++|+|||++++++ . ++.|++||..+++....+.++......+.+++|+|||++|++++. ++.|++
T Consensus 20 ~~~~s~dg~~~~~~-~----d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 20 FPNWISGQEYLHQS-A----DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCEESSSSEEEEEC-T----TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECCCCeEEEEc-C----CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence 57899999655543 2 456999999999988777765511114889999999999998876 789999
Q ss_pred EEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceecccc
Q 001386 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 684 (1088)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~ 684 (1088)
||+.+++.+...... ..+..++|||||+.|+.+. ++.|++|++.+++..........
T Consensus 95 ~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~------------------- 151 (719)
T 1z68_A 95 YDLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE------------------- 151 (719)
T ss_dssp EETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBT-------------------
T ss_pred EECCCCccccceecC---cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc-------------------
Confidence 999998873111111 2478899999999999986 67999999987754332110000
Q ss_pred CCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccc-cceEEEEc
Q 001386 685 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRW 763 (1088)
Q Consensus 685 ~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d-g~v~iw~~ 763 (1088)
..+..|..+ .++.- .-.....+++|||||+.|+.++.+ +.+.+|.+
T Consensus 152 --------------~~v~~g~~~---~v~~e----------------e~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~ 198 (719)
T 1z68_A 152 --------------NKIFNGIPD---WVYEE----------------EMLATKYALWWSPNGKFLAYAEFNDTDIPVIAY 198 (719)
T ss_dssp --------------TTEEESSCC---HHHHH----------------HTTCSSCCEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred --------------CCeEccccc---ceeee----------------ecccCcccEEECCCCCEEEEEEECCCCCceEEe
Confidence 000000000 00000 000122478999999999988765 55566654
Q ss_pred cCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeE---E-----Ee
Q 001386 764 PRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI---L-----TI 835 (1088)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~---~-----~~ 835 (1088)
..... .+...+..+.+.+.|.. .....|++||+.+++.. . .+
T Consensus 199 ~~~~~---------------------------~~~~~~~~~~yp~~g~~---~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 248 (719)
T 1z68_A 199 SYYGD---------------------------EQYPRTINIPYPKAGAK---NPVVRIFIIDTTYPAYVGPQEVPVPAMI 248 (719)
T ss_dssp EECCS---------------------------SSSCEEEEEECCBTTSC---CCEEEEEEEESSCHHHHCCEECCCCHHH
T ss_pred eccCC---------------------------CCCccceeecCCCCCCC---CCeeEEEEEECCCCCccceeEccCCccC
Confidence 32110 12223445555544431 11347999999988753 1 23
Q ss_pred cCCCCCeEEEEEcCCCCcEEEEEeCC----CeEEEEE----cCCceeeeee----ccccCCee-----EEEECCCCCEEE
Q 001386 836 MPPSPTATSLAFNPHDNNVIAIGMDD----STILIYN----ARSSEVISKL----EGHSKRVT-----GLVFSDALNILV 898 (1088)
Q Consensus 836 ~~~~~~i~~l~~sp~d~~~lasg~~d----g~i~lwd----~~~~~~~~~l----~~h~~~V~-----~l~~s~dg~~la 898 (1088)
.+|...+..++||| |++++++.... ..|++|| +.++++...+ .+|.+.+. .++|||||+.|+
T Consensus 249 ~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 327 (719)
T 1z68_A 249 ASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYY 327 (719)
T ss_dssp HTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEE
T ss_pred CCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEE
Confidence 35777899999999 68887775433 2589999 8888876666 46777777 899999999665
Q ss_pred E--EeCCC--cEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeC-----CeEEEEEcCc--cee-
Q 001386 899 S--SGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----THLAIYEAEE--LTC- 965 (1088)
Q Consensus 899 s--~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d-----~~i~vwd~~~--~~~- 965 (1088)
. ...+| .|.+||+.+++. ..+ ..+. ..+..+.++ |++.|+. +.+ +..++|.+.. +..
T Consensus 328 ~~~~~~~g~~~l~~~~~~~~~~---~~l--t~~~----~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~ 397 (719)
T 1z68_A 328 KIFSDKDGYKHIHYIKDTVENA---IQI--TSGK----WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPS 397 (719)
T ss_dssp EEEECTTSCEEEEEESSCSTTC---EEC--SCSS----SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCC
T ss_pred EEEEccCCceEEEEEECCCCce---Eec--ccCc----eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCC
Confidence 4 44555 566777766541 111 1121 146777888 8888877 443 6788887753 421
Q ss_pred eeee---ecCCCcCEEEEEEeeCCCEEEEE-eCC--CcEEEEEcCCCceEEEec
Q 001386 966 LKQW---FPISSVPISQATFSCDCRMVFTS-FVD--GTLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 966 ~~~~---~~~h~~~v~~l~fs~dg~~l~s~-s~d--g~v~vwd~~~~~~~~~~~ 1013 (1088)
...+ ..+|...+..+.||+||++++.. +.+ ..+.+||+.+++....+.
T Consensus 398 ~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 398 KKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp EEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred ceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 1221 12366778899999999887754 333 468899999998655444
No 149
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=5.3e-20 Score=220.03 Aligned_cols=272 Identities=12% Similarity=0.073 Sum_probs=197.5
Q ss_pred CCCceeeeecCCCCeEEEEEcc-cCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCC-CCeEEEEECCCCCEE
Q 001386 334 SSSPMSMDFHPVQHTLLLVGTN-VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLL 411 (1088)
Q Consensus 334 ~~~V~~v~~spdg~~lla~g~~-dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~V~~l~~s~dg~~l 411 (1088)
..+|++++|||||++ ||+++. ||++.||++.+++... +..|. ..|..++|||| +.+
T Consensus 21 ~~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l 78 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVI 78 (582)
T ss_dssp HSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEE
T ss_pred ccchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEE
Confidence 448999999999995 566555 9999999997766443 33344 68999999999 777
Q ss_pred EEEeC---CCEEEEEEccC--CCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCc
Q 001386 412 GVAYS---KHIVQLYAYHG--GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1088)
Q Consensus 412 as~~~---dg~i~vwd~~~--~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1088)
++++. +....+|.+.. ..... .+..+. .+...+|+||++.+++++++.++ +.+||+.+++.......+.
T Consensus 79 ~~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~- 152 (582)
T 3o4h_A 79 LVRDVSKGAEQHALFKVNTSRPGEEQ---RLEAVK-PMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLPG- 152 (582)
T ss_dssp EEEECSTTSCCEEEEEEETTSTTCCE---ECTTSC-SBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEESS-
T ss_pred EEeccCCCCcceEEEEEeccCCCccc---cccCCC-CceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCCC-
Confidence 77765 44566666544 22112 232222 34467899999875666666555 5599999987665554333
Q ss_pred cEEEEeeeeeCCceEEEEEecC----CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001386 487 PVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 562 (1088)
.+++| ++||++|++++.+ +.|++||+.+++.. .+..+...+..++|||||+.|+++.. ++...|++||+
T Consensus 153 --~~~~~--spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~ 225 (582)
T 3o4h_A 153 --FGFVS--DIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDP 225 (582)
T ss_dssp --CEEEE--EEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECT
T ss_pred --ceEEE--CCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcC
Confidence 56666 4577899988877 78999999887765 55667778899999999999995433 34458999999
Q ss_pred CCCceeEEEeccccccccEEEEE--------EeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCC
Q 001386 563 SEGAIKRTYQGLQLQHNSVSVVH--------FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1088)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1088)
.+++.. .+.++. ..+..+. |+|||..+++++.++.+++|++ |+..... . ..+.+++|+ ++
T Consensus 226 ~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~---~--~~v~~~~~s-dg 293 (582)
T 3o4h_A 226 RDGSVE-DLELPS---KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAP---Q--GNHGRVVLW-RG 293 (582)
T ss_dssp TTCCEE-ECCCSC---SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCC---S--SEEEEEEEE-TT
T ss_pred CCCcEE-EccCCC---cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC---C--CceEEEEec-CC
Confidence 999887 666655 4455555 9999988888999999999999 6655421 1 347789999 99
Q ss_pred CEEEEEeCCCc---EEEEeCC
Q 001386 635 TLLAVIANENR---IKILETP 652 (1088)
Q Consensus 635 ~~l~~~~~dg~---i~iwd~~ 652 (1088)
+++++++.+.+ +.+|+..
T Consensus 294 ~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 294 KLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEEEEEETTEEEEEEEETTC
T ss_pred EEEEEEcCCCCCCeEEEEcCC
Confidence 99988887744 5666654
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=1e-18 Score=193.96 Aligned_cols=248 Identities=12% Similarity=0.154 Sum_probs=170.8
Q ss_pred CCCCeeEEEEecCCCEEEEEe---CCcEEEEEcCCce--eEEEecCCCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEEcC
Q 001386 797 SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFK--TILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNAR 870 (1088)
Q Consensus 797 ~~~~v~~~~~s~dg~~l~~~~---dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~i~lwd~~ 870 (1088)
+...+..++|+|||+++++.. ++.|.+|++.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence 345677899999999444443 3789999998765 4445455677889999999 888888777 78999999996
Q ss_pred -Cc--eeeeeecc---------ccCCeeEEEECCCCCEEEEEeCCCcEEEEEcC-CCceeeeeeeecCCCCccCCCCeEE
Q 001386 871 -SS--EVISKLEG---------HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETH 937 (1088)
Q Consensus 871 -~~--~~~~~l~~---------h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 937 (1088)
++ +.+..+.. +...+.+++|+|||+++++...++.|++|++. +++...........+ ..+..
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~ 191 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRH 191 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCce
Confidence 33 33333321 12348899999999966666678899999998 444332222222222 24678
Q ss_pred EEEcCCCCEEEEE--eCCeEEEEEcCc--ceeeee-eecCCC------cCEEEEEEeeCCCEEE-EEeCCCcEEEEEcCC
Q 001386 938 IQFHKDQTRFLLV--HETHLAIYEAEE--LTCLKQ-WFPISS------VPISQATFSCDCRMVF-TSFVDGTLSIHEASN 1005 (1088)
Q Consensus 938 ~~fs~dg~~l~~~--~d~~i~vwd~~~--~~~~~~-~~~~h~------~~v~~l~fs~dg~~l~-s~s~dg~v~vwd~~~ 1005 (1088)
++|+|||++++++ .++.+.+|++.. ++.... ...... ..+..++|+|||++|+ +...++.|.+|++..
T Consensus 192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 9999999987774 467899999874 543211 111111 4588999999999874 555689999999973
Q ss_pred C---ceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCC-CcEEEEeCCCCCC
Q 001386 1006 L---EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-GEVYVIEPNEPGD 1061 (1088)
Q Consensus 1006 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~d-g~v~~w~l~~~~~ 1061 (1088)
. ..+..+... ...+..++|+| ||+.|++++.+ +.|.+|++....+
T Consensus 272 ~g~~~~~~~~~~~----------~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg 320 (347)
T 3hfq_A 272 DGHLTLIQQISTE----------GDFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSG 320 (347)
T ss_dssp GGCEEEEEEEECS----------SSCCCEEEECT-TSSEEEEEETTTTEEEEEEECTTTC
T ss_pred CCcEEEeEEEecC----------CCCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCC
Confidence 3 223222210 12356799999 88888877765 8999997754433
No 151
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.85 E-value=3.6e-20 Score=227.88 Aligned_cols=278 Identities=14% Similarity=0.081 Sum_probs=195.2
Q ss_pred eeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCC---CeEEEEECCCCCEEEEE
Q 001386 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGSLLGVA 414 (1088)
Q Consensus 338 ~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~---~V~~l~~s~dg~~las~ 414 (1088)
..++|+|||+ +++++ .|++|++||+.+++.... +.+|.. .|.+++|||||++||++
T Consensus 19 ~~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~~-------------------~~~~~~~~~~~~~~~~SpDg~~la~~ 77 (719)
T 1z68_A 19 FFPNWISGQE-YLHQS-ADNNIVLYNIETGQSYTI-------------------LSNRTMKSVNASNYGLSPDRQFVYLE 77 (719)
T ss_dssp CCCEESSSSE-EEEEC-TTSCEEEEESSSCCEEEE-------------------ECHHHHHTTTCSEEEECTTSSEEEEE
T ss_pred CccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEEE-------------------EccccccccceeeEEECCCCCeEEEE
Confidence 4789999996 66665 589999999999986543 222322 48899999999999998
Q ss_pred eC---------CCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe-ccC
Q 001386 415 YS---------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGH 484 (1088)
Q Consensus 415 ~~---------dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~-~~~ 484 (1088)
+. ++.|++||+.+++.+... .+ ...+..++|||||+ .|+.+. ++.|++||+.+++..... .++
T Consensus 78 ~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~~~~l~~~~~ 150 (719)
T 1z68_A 78 SDYSKLWRYSYTATYYIYDLSNGEFVRGN-EL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDPPFQITFNGR 150 (719)
T ss_dssp EEEEECSSSCEEEEEEEEETTTTEECCSS-CC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCCCCB
T ss_pred ecCceeEEeecceEEEEEECCCCccccce-ec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCCcEEEecCCC
Confidence 76 689999999998752101 12 24688999999999 566665 789999999988775432 233
Q ss_pred CccE-----------------EEEeeeeeCCceEEEEEecCC----------------------------------eEEE
Q 001386 485 GAPV-----------------YSLCPHAKENIHFIFSISVDG----------------------------------KIKA 513 (1088)
Q Consensus 485 ~~~v-----------------~~~~~~~~~~~~~l~s~~~dg----------------------------------~i~i 513 (1088)
...| .+++| ++||+.|++++.|. .|++
T Consensus 151 ~~~v~~g~~~~v~~ee~~~~~~~~~w--SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~ 228 (719)
T 1z68_A 151 ENKIFNGIPDWVYEEEMLATKYALWW--SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFI 228 (719)
T ss_dssp TTTEEESSCCHHHHHHTTCSSCCEEE--CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred cCCeEcccccceeeeecccCcccEEE--CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEE
Confidence 3322 35666 66888999988663 7889
Q ss_pred EECCCCCce--EE------ecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEe----CCCCceeEEE----eccccc
Q 001386 514 WLYDSLGAR--VD------YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN----ESEGAIKRTY----QGLQLQ 577 (1088)
Q Consensus 514 wd~~~~~~~--~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd----~~~~~~~~~~----~~~~~~ 577 (1088)
||+.+++.. .. +..+...+..++||||++.+++..........|++|| ..+++....+ .++.
T Consensus 229 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~-- 306 (719)
T 1z68_A 229 IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRT-- 306 (719)
T ss_dssp EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSS--
T ss_pred EECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCC--
Confidence 999876642 11 2346667899999999887776544344456799999 8887765444 2443
Q ss_pred cccEE-----EEEEeCCCCEEEE--EeCCC--cEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCC-----
Q 001386 578 HNSVS-----VVHFDTAKDQILA--AGDDH--VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE----- 643 (1088)
Q Consensus 578 ~~~v~-----~~~~~~~~~~l~~--~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d----- 643 (1088)
..+. .+.|+|||+.++. ...+| .|.+||+.+++ ...+..+ ...+..+.++ +++.++..+.+
T Consensus 307 -~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~--~~~v~~~~~~-d~~~i~~~~~~~~~~~ 381 (719)
T 1z68_A 307 -GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSG--KWEAINIFRV-TQDSLFYSSNEFEEYP 381 (719)
T ss_dssp -SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCS--SSCEEEEEEE-CSSEEEEEESCGGGCT
T ss_pred -ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccC--ceEEEEEEEE-eCCEEEEEEecCCCCC
Confidence 4454 7889999997655 33455 57777877766 3344322 2235667777 78777776654
Q ss_pred CcEEEEeCC
Q 001386 644 NRIKILETP 652 (1088)
Q Consensus 644 g~i~iwd~~ 652 (1088)
+..++|.+.
T Consensus 382 ~~~~l~~~~ 390 (719)
T 1z68_A 382 GRRNIYRIS 390 (719)
T ss_dssp TCBEEEEEE
T ss_pred ceEEEEEEe
Confidence 777888765
No 152
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=1.2e-19 Score=196.34 Aligned_cols=245 Identities=11% Similarity=0.074 Sum_probs=181.5
Q ss_pred hhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCC-CcceeeeceeeeeeccccccceeeeecCC-CCCeEE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNR 401 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h-~~~V~~ 401 (1088)
......+..|...|.+++|||||+ +|++++ ++.|.+||+.+ ++.... ..+| ...|.+
T Consensus 31 ~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~-------------------~~~~~~~~~~~ 89 (297)
T 2ojh_A 31 TRKMRVVWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKV-------------------DTGFATICNND 89 (297)
T ss_dssp TTEEEEEEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEEC-------------------CCTTCCCBCSC
T ss_pred CCceeeeccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEe-------------------ccccccccccc
Confidence 334455677888999999999999 566665 78999999998 765532 3334 478899
Q ss_pred EEECCCCCEEEEEe--CCCEEEEE--EccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCC-CCc
Q 001386 402 VVWSPDGSLLGVAY--SKHIVQLY--AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGS 476 (1088)
Q Consensus 402 l~~s~dg~~las~~--~dg~i~vw--d~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~-~~~ 476 (1088)
++|+|||++|++++ .++...|| +..+++ .. .+..+. .+..++|+||++. ++++++.|+.+++|++. .+.
T Consensus 90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~~-~~~~~~~spdg~~-l~~~~~~~~~~~l~~~~~~~~ 163 (297)
T 2ojh_A 90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKNL-PSYWHGWSPDGKS-FTYCGIRDQVFDIYSMDIDSG 163 (297)
T ss_dssp CEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSSS-SEEEEEECTTSSE-EEEEEEETTEEEEEEEETTTC
T ss_pred eEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecCC-CccceEECCCCCE-EEEEECCCCceEEEEEECCCC
Confidence 99999999999998 33445555 545543 22 343343 5899999999994 34478889999999864 233
Q ss_pred eeEEeccCCccEEEEeeeeeCCceEEEEEe-cCCeEEEEECC-CCCceEEecCCCCceEEEEEccCCCEEEEEeeCCC--
Q 001386 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE-- 552 (1088)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~-- 552 (1088)
....+..+...+.+++|+ +++..++.++ .++.+++|+++ .......+..+...+..++|+|+|++|++++.+..
T Consensus 164 ~~~~~~~~~~~~~~~~~s--~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 241 (297)
T 2ojh_A 164 VETRLTHGEGRNDGPDYS--PDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVF 241 (297)
T ss_dssp CEEECCCSSSCEEEEEEC--TTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCC
T ss_pred cceEcccCCCccccceEC--CCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCC
Confidence 446677788889999985 4667777665 58999999987 44556666667778899999999999998876432
Q ss_pred -----CceeEEEEeCCCCceeEEE--eccccccccEEEEEEeCCCCEEEEEeCCC
Q 001386 553 -----GESFLVEWNESEGAIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDDH 600 (1088)
Q Consensus 553 -----~~~~i~iwd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~s~dg 600 (1088)
....|++||+.+++..... .++. ..+..++|+|++++|++++.+.
T Consensus 242 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 242 DHPRDLDVRVQLMDMDGGNVETLFDLFGGQ---GTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SCCSSEEEEEEEEETTSCSCEEEEEEEEST---TTSCSCCBCTTSSEEEEEEECC
T ss_pred cccccCceEEEEEecCCCCceeeeccCCCC---cccccceECCCCCEEEEEEecc
Confidence 2467999999988764433 3555 6788899999999999877653
No 153
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.84 E-value=3.3e-19 Score=201.61 Aligned_cols=308 Identities=10% Similarity=0.020 Sum_probs=203.8
Q ss_pred ccCCCchhheeecccCCCCcee-----eeecCCCCeEEEEEcccC--cEEEEecCCCcceeeeceeeeeeccccccceee
Q 001386 318 SFSDFPKTVAQTLIEGSSSPMS-----MDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA 390 (1088)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~-----v~~spdg~~lla~g~~dg--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~ 390 (1088)
+++......+..|..|...+.. .+|||||+++++++..++ .|.+||+.+++....
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l------------------ 75 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL------------------ 75 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC------------------
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe------------------
Confidence 3444445667778888766665 899999996555544467 488889988876542
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEE--ecCCCCcEEEEE--------
Q 001386 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA--FSAPCKQISVIT-------- 460 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~--~s~d~~~l~l~s-------- 460 (1088)
..++...+..++|||||++|++++.++.|++||+.+++... .+..+...+.... +++|++ .++.
T Consensus 76 -t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~ 149 (388)
T 3pe7_A 76 -TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDW 149 (388)
T ss_dssp -CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGC
T ss_pred -eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCccc
Confidence 34455556578899999999999999999999999987543 2334555454443 489998 4543
Q ss_pred --------------EeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeC-CceEEEEEecC------CeEEEEECCCC
Q 001386 461 --------------CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE-NIHFIFSISVD------GKIKAWLYDSL 519 (1088)
Q Consensus 461 --------------~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~d------g~i~iwd~~~~ 519 (1088)
.+.+..|.+||+.+++.. .+..+...+..+.| ++ +|..|+....+ ..|.++|....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~--sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~ 226 (388)
T 3pe7_A 150 VPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIY--RPYDDSTVAFCHEGPHDLVDARMWLINEDGT 226 (388)
T ss_dssp CCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEE--ETTEEEEEEEEECSCTTTSSCSEEEEETTSC
T ss_pred ccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEE--CCCCCCEEEEEEecCCCCCcceEEEEeCCCC
Confidence 224578999999998754 44456677888888 45 66777777653 36788887665
Q ss_pred CceEEecCCC-CceEEEEEccCCCEEEEEeeCC-CCceeEEEEeCCCCceeEE--EeccccccccEEEEEEeCCCCEEEE
Q 001386 520 GARVDYDAPG-LGCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEGAIKRT--YQGLQLQHNSVSVVHFDTAKDQILA 595 (1088)
Q Consensus 520 ~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~ 595 (1088)
.......... ..+..++|+|||+.|+..+... .....|++||+.+++.... +.++...........|+|||+.++.
T Consensus 227 ~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~ 306 (388)
T 3pe7_A 227 NMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPV 306 (388)
T ss_dssp CCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC--
T ss_pred ceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCccee
Confidence 5443333222 2577889999999887765432 2234599999999875332 2221100000112369999998886
Q ss_pred E---------eCCCcEEEEEcCCCeeeEEEeCCCCCC--------CCceEEEecCCCEEEEEeC-CCcEEEEeCC
Q 001386 596 A---------GDDHVIKIWDMNKVQLLTTIDAGGGLP--------ENPRICFNKNGTLLAVIAN-ENRIKILETP 652 (1088)
Q Consensus 596 ~---------s~dg~i~iwd~~~~~~~~~~~~~~~~~--------~v~~v~~s~~~~~l~~~~~-dg~i~iwd~~ 652 (1088)
. ..+..|++||+.+++............ .+..++|+|||+.|+..+. +|...||.+.
T Consensus 307 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 307 DVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp ----------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred EeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 4 456789999999887644433322110 3678899999998887764 6666666543
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=7.7e-19 Score=195.01 Aligned_cols=279 Identities=12% Similarity=0.103 Sum_probs=184.9
Q ss_pred cCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEecc---ccceEEEEccCCCCCCCCCCCCcccCCC
Q 001386 706 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS---NGVHLMWRWPRNDLTLSTEVPPRLYQPR 782 (1088)
Q Consensus 706 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 782 (1088)
.++.+.+|.++.... ....+.. ..+...+..++|+|+|+ +++++. ++.|.+|++..+..
T Consensus 14 ~~~~i~v~~~d~~tg-~~~~~~~--~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-------------- 75 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAK-TLTNDGL--LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-------------- 75 (347)
T ss_dssp SCCEEEEEEEETTTT-EEEEEEE--EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE--------------
T ss_pred CCCCEEEEEEcCCCC-eEEEeee--eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE--------------
Confidence 356677887664221 1111111 12345667899999999 665554 68999998754321
Q ss_pred CCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe--CCcEEEEEcC---CceeEEEecCC---------CCCeEEEEEc
Q 001386 783 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVM---TFKTILTIMPP---------SPTATSLAFN 848 (1088)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--dg~i~iwd~~---~~~~~~~~~~~---------~~~i~~l~~s 848 (1088)
....... .+...+..++|+|||++|++++ ++.|.+|++. ..+.+..+... ...+.+++|+
T Consensus 76 ----~~~~~~~--~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s 149 (347)
T 3hfq_A 76 ----HKLNTVV--APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT 149 (347)
T ss_dssp ----EEEEEEE--EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC
T ss_pred ----EEeeeee--cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEEC
Confidence 0111101 1456788999999999888886 6889999996 23333333321 2348899999
Q ss_pred CCCCcEEEEEeCCCeEEEEEcC-Cceee--eeeccc-cCCeeEEEECCCCCEEEE-EeCCCcEEEEEcCC--Cceeeeee
Q 001386 849 PHDNNVIAIGMDDSTILIYNAR-SSEVI--SKLEGH-SKRVTGLVFSDALNILVS-SGGDAQIFVWDVDG--WGIQTCRS 921 (1088)
Q Consensus 849 p~d~~~lasg~~dg~i~lwd~~-~~~~~--~~l~~h-~~~V~~l~~s~dg~~las-~s~Dg~i~iwd~~~--~~~~~~~~ 921 (1088)
| +++++++...++.|++|++. +++.. ..+..+ ...+..++|+|||++|++ ...++.|.+|+++. ++......
T Consensus 150 p-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~ 228 (347)
T 3hfq_A 150 P-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGI 228 (347)
T ss_dssp T-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred C-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeee
Confidence 9 77777777778999999998 55433 222322 236788999999997665 45688999999985 44332223
Q ss_pred eecCCCCccCCCCeEEEEEcCCCCEEEE-E-eCCeEEEEEcCc-c--eeeeeeecCCCcCEEEEEEeeCCCEEEEEeCC-
Q 001386 922 LQTPDGVMTLAPSETHIQFHKDQTRFLL-V-HETHLAIYEAEE-L--TCLKQWFPISSVPISQATFSCDCRMVFTSFVD- 995 (1088)
Q Consensus 922 ~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~-~d~~i~vwd~~~-~--~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~d- 995 (1088)
+............+..++|+|||++|++ . .++.|.+|++.. + +.+.. ...+...+..++|+|||++|++++.+
T Consensus 229 ~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~-~~~~~~~~~~~~~spdg~~l~v~~~~~ 307 (347)
T 3hfq_A 229 VKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQ-ISTEGDFPRDFDLDPTEAFVVVVNQNT 307 (347)
T ss_dssp EESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEE-EECSSSCCCEEEECTTSSEEEEEETTT
T ss_pred eeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEE-EecCCCCcCeEEECCCCCEEEEEEcCC
Confidence 3322221111124789999999998865 3 478999999973 2 33333 33456678899999999999888765
Q ss_pred CcEEEE--EcCCCceEE
Q 001386 996 GTLSIH--EASNLEVQC 1010 (1088)
Q Consensus 996 g~v~vw--d~~~~~~~~ 1010 (1088)
+.|.+| |..+|++..
T Consensus 308 ~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 308 DNATLYARDLTSGKLSL 324 (347)
T ss_dssp TEEEEEEECTTTCCEEE
T ss_pred CcEEEEEEeCCCCeEEe
Confidence 899999 556777653
No 155
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.84 E-value=9.2e-19 Score=214.91 Aligned_cols=279 Identities=14% Similarity=0.123 Sum_probs=188.0
Q ss_pred CCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCC-----CeEEEEECCCCC
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-----SVNRVVWSPDGS 409 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~-----~V~~l~~s~dg~ 409 (1088)
.....++|+|||+ +++++ |++|++||+.+|+.... +.+|.. ....++|||||+
T Consensus 17 ~~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~Spdg~ 74 (740)
T 4a5s_A 17 LKLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVF-------------------LENSTFDEFGHSINDYSISPDGQ 74 (740)
T ss_dssp CCCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEE-------------------ECTTTTTTCCSCCCEEEECTTSS
T ss_pred ccccccEECCCCc-EEEEc--CCcEEEEECCCCceEEE-------------------EechhhhhhcccccceEECCCCC
Confidence 3567899999997 67776 89999999999986543 334432 334589999999
Q ss_pred EEEEEeCC---------CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001386 410 LLGVAYSK---------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1088)
Q Consensus 410 ~las~~~d---------g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~ 480 (1088)
+|++++.+ +.+.+||+.+++... +..|...+...+|||||+ .|+.+. |+.|++||+.+++..+.
T Consensus 75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~~l 147 (740)
T 4a5s_A 75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRI 147 (740)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEEC
T ss_pred EEEEEECCeeeEEEccceEEEEEECCCCcEEE----cccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceEEE
Confidence 99999876 567799999987543 667888999999999999 466554 78999999998875532
Q ss_pred -eccCCccEE-----------------EEeeeeeCCceEEEEEecCCe-EEEEECCCCCceEEecCCCCceEEEEEccCC
Q 001386 481 -FEGHGAPVY-----------------SLCPHAKENIHFIFSISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANG 541 (1088)
Q Consensus 481 -~~~~~~~v~-----------------~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g 541 (1088)
..++...+. .+.| ++||+.|+.++.|.. +.+|++....... .+...+..+.+.+.|
T Consensus 148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAG 222 (740)
T ss_dssp CSCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTT
T ss_pred cCCCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCc
Confidence 223333232 2555 678899998877655 8888763221100 123355667777776
Q ss_pred CEEEEEeeCCCCceeEEEEeCCC---Cc--eeEEEeccc---cccccEEEEEEeCCCCEEEEEeC----CCcEEEEEcCC
Q 001386 542 RRLFSCGTSKEGESFLVEWNESE---GA--IKRTYQGLQ---LQHNSVSVVHFDTAKDQILAAGD----DHVIKIWDMNK 609 (1088)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~---~~--~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~s~----dg~i~iwd~~~ 609 (1088)
... ....|++||+.+ ++ ....+.... .+...+..++|+|||+.++.... +..|.+||+.+
T Consensus 223 ~~~--------~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 223 AVN--------PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp SCC--------CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred CcC--------CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence 432 234599999998 73 222333210 12367899999999997666432 34799999998
Q ss_pred Ce----ee--EEE--eCCCCCCC---CceEEEecCCCEEE-EEeC-C--CcEEEEeCCCCC
Q 001386 610 VQ----LL--TTI--DAGGGLPE---NPRICFNKNGTLLA-VIAN-E--NRIKILETPESN 655 (1088)
Q Consensus 610 ~~----~~--~~~--~~~~~~~~---v~~v~~s~~~~~l~-~~~~-d--g~i~iwd~~~~~ 655 (1088)
++ +. ..+ ..+..... ....+|+|||+.++ ..+. + ..|.+|+..++.
T Consensus 295 g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 295 SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 87 21 111 22222111 23789999999887 6654 3 457777776543
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=1.7e-17 Score=185.12 Aligned_cols=311 Identities=11% Similarity=0.115 Sum_probs=196.9
Q ss_pred ccCCCEEEEEeeCCCCceeEEEEeC--CCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC----CcEEEEEcCC--
Q 001386 538 SANGRRLFSCGTSKEGESFLVEWNE--SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNK-- 609 (1088)
Q Consensus 538 s~~g~~l~~~~~~~~~~~~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d----g~i~iwd~~~-- 609 (1088)
.+...++++++.....+..|++|.+ .+++.......+. ..+..++|+|++++|++++.+ +.|.+|++..
T Consensus 10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~---~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~ 86 (361)
T 3scy_A 10 TDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEV---ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK 86 (361)
T ss_dssp GGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEEC---SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT
T ss_pred CCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccC---CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC
Confidence 3444566666654434555777654 5666544333333 667889999999999998875 7999998865
Q ss_pred Ceee--EEEeCCCCCCCCceEEEecCCCEEEEEe-CCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCC
Q 001386 610 VQLL--TTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 686 (1088)
Q Consensus 610 ~~~~--~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~ 686 (1088)
++.. .....+. .....+++ +++++++++ .++.+.+|++.....+.....
T Consensus 87 g~~~~~~~~~~~~--~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~------------------------ 138 (361)
T 3scy_A 87 GTLHLLNTQKTMG--ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASD------------------------ 138 (361)
T ss_dssp TEEEEEEEEECSS--SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE------------------------
T ss_pred CcEEEeeEeccCC--CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccce------------------------
Confidence 4432 2333222 23455666 788777776 578999999874422211100
Q ss_pred ceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCC
Q 001386 687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN 766 (1088)
Q Consensus 687 ~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~ 766 (1088)
.+.....+.
T Consensus 139 ----------------------------------------------------~~~~~g~~~------------------- 147 (361)
T 3scy_A 139 ----------------------------------------------------VIEFKGSGP------------------- 147 (361)
T ss_dssp ----------------------------------------------------EEECCCCCS-------------------
T ss_pred ----------------------------------------------------eEEccCCCC-------------------
Confidence 000000000
Q ss_pred CCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe--CCcEEEEEcCCce-------e------
Q 001386 767 DLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFK-------T------ 831 (1088)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--dg~i~iwd~~~~~-------~------ 831 (1088)
.+...+...+.+++|+|||+++++++ ++.|.+|++.... .
T Consensus 148 -------------------------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~ 202 (361)
T 3scy_A 148 -------------------------DKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTP 202 (361)
T ss_dssp -------------------------CTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEE
T ss_pred -------------------------CccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccc
Confidence 00001334467788888888776665 6778888876433 1
Q ss_pred EEEecCCCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEEcCCcee--eeee---ccccCCeeEEEECCCCCEEEEEeCC--
Q 001386 832 ILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSEV--ISKL---EGHSKRVTGLVFSDALNILVSSGGD-- 903 (1088)
Q Consensus 832 ~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~i~lwd~~~~~~--~~~l---~~h~~~V~~l~~s~dg~~las~s~D-- 903 (1088)
......+...+..++|+| |++++++++ .++.|.+|++.+++. +..+ ..+...+..++|+|||++|+++..+
T Consensus 203 ~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~ 281 (361)
T 3scy_A 203 EAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA 281 (361)
T ss_dssp EEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSS
T ss_pred cceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCC
Confidence 112233456678999999 888777776 689999999988754 2323 3344557899999999998776654
Q ss_pred CcEEEEEcC--CCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE--eCCeEEEE--EcCcceeeeeeecCCCcCE
Q 001386 904 AQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIY--EAEELTCLKQWFPISSVPI 977 (1088)
Q Consensus 904 g~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~--~d~~i~vw--d~~~~~~~~~~~~~h~~~v 977 (1088)
+.|.+|+++ +++......+.. + ..+.+++|+|||++|+++ .++.|.+| |..+|+........+...+
T Consensus 282 ~~i~v~~~~~~~g~~~~~~~~~~--g-----~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p 354 (361)
T 3scy_A 282 DGVAIFKVDETNGTLTKVGYQLT--G-----IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKP 354 (361)
T ss_dssp CEEEEEEECTTTCCEEEEEEEEC--S-----SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSE
T ss_pred CEEEEEEEcCCCCcEEEeeEecC--C-----CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCC
Confidence 899999996 344322222222 1 246799999999999885 35789996 5557776544323345678
Q ss_pred EEEEEe
Q 001386 978 SQATFS 983 (1088)
Q Consensus 978 ~~l~fs 983 (1088)
.|++|.
T Consensus 355 ~~v~~~ 360 (361)
T 3scy_A 355 VCLKFV 360 (361)
T ss_dssp EEEEEE
T ss_pred eEEEEc
Confidence 899886
No 157
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=1.4e-18 Score=197.33 Aligned_cols=312 Identities=13% Similarity=0.110 Sum_probs=200.6
Q ss_pred ccEEEEEEecCCceEEEeccccceEEEEccCCCCCCC-CCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEE
Q 001386 735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS-TEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYL 813 (1088)
Q Consensus 735 ~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 813 (1088)
..+..+++++++..+++++.++ +++|+......... ......+.... .... + .+...|.+++|+|+|++|
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~---~~~~~v~~l~~spdg~~l 107 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKV---QGLL--V---PMKFPIHHLALSCDNLTL 107 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECC---CCEE--E---CCSSCEEEEEECTTSCEE
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccC---cccc--c---cCCCcccEEEEcCCCCEE
Confidence 4578899999999999988887 88887542211000 00000000000 0000 1 256689999999999999
Q ss_pred E----EEe-CCcEEEEEcCCc--------e---eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeee
Q 001386 814 F----SAS-GGVISLYIVMTF--------K---TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 877 (1088)
Q Consensus 814 ~----~~~-dg~i~iwd~~~~--------~---~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~ 877 (1088)
+ +++ |+.|++||+.++ + .+..+.+|...|.+++|+|+++.+|++++.||+|++||++++..+..
T Consensus 108 av~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 108 SACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceee
Confidence 9 555 789999998765 1 24556678999999999995489999999999999999999987777
Q ss_pred eccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCC-CccCCCCeEEEEEcCCCCEEEEE--eCC-
Q 001386 878 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG-VMTLAPSETHIQFHKDQTRFLLV--HET- 953 (1088)
Q Consensus 878 l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~fs~dg~~l~~~--~d~- 953 (1088)
..+|...|.+++|+|+|++|++++.||+|++||+. ++... .+..... .......+.+++|++++.++++. .+|
T Consensus 188 ~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~--~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 188 TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKK--VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEE--EECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccc--cccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence 77899999999999999999999999999999998 33221 1211111 00011268999999999998773 332
Q ss_pred -----eEEEEEcCccee----e-eeeec------CCCcCEEEEEEeeCCCEEEEEeC-CCcEEEEEcCCC--ceEEEec-
Q 001386 954 -----HLAIYEAEELTC----L-KQWFP------ISSVPISQATFSCDCRMVFTSFV-DGTLSIHEASNL--EVQCRIL- 1013 (1088)
Q Consensus 954 -----~i~vwd~~~~~~----~-~~~~~------~h~~~v~~l~fs~dg~~l~s~s~-dg~v~vwd~~~~--~~~~~~~- 1013 (1088)
.+++|++...+. . ..+.. +...+-..+.+-+|.+++++++. .+.|.|...... .......
T Consensus 265 ~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~~~ 344 (434)
T 2oit_A 265 LETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWLLE 344 (434)
T ss_dssp SSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEEEC
T ss_pred cCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEecc
Confidence 389999986521 1 11110 11222223344478888776665 445666664332 1111111
Q ss_pred --cccccCCCCccccccceEEEE--CCCC------------CCEEEEEeCCCcEEEEeCCC
Q 001386 1014 --STAYLRPTTSCLHVYPHAIAA--HPLK------------PTQFAVGLTNGEVYVIEPNE 1058 (1088)
Q Consensus 1014 --~~~~~~~~~~~~~~~~~~~~~--~p~d------------~~~l~~~~~dg~v~~w~l~~ 1058 (1088)
....+|-...+...+++.+++ +..+ --.|.+-+.||.+..|.+-.
T Consensus 345 d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 345 DSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp GGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred ccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 111222222234455544443 2211 13677888999999999865
No 158
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.83 E-value=1.3e-18 Score=197.48 Aligned_cols=262 Identities=12% Similarity=0.051 Sum_probs=178.2
Q ss_pred CCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEE--
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG-- 412 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~la-- 412 (1088)
..+..+++++++. ++++|+.++ ++||+........... .+.. ....+.......|...|.+++|+|||++||
T Consensus 37 ~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~ 110 (434)
T 2oit_A 37 ERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPG---DDPN-KIVDKVQGLLVPMKFPIHHLALSCDNLTLSAC 110 (434)
T ss_dssp SCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTT---CCTT-CEEECCCCEEECCSSCEEEEEECTTSCEEEEE
T ss_pred CCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccc---cCcc-cccccCccccccCCCcccEEEEcCCCCEEEEE
Confidence 4689999999998 678888777 8998864321100000 0000 000001111224677899999999999999
Q ss_pred --EEeCCCEEEEEEccCC--------CcccceeEeccCCCCEEEEEecCC-CCcEEEEEEeCCCcEEEEeCCCCceeEEe
Q 001386 413 --VAYSKHIVQLYAYHGG--------SDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1088)
Q Consensus 413 --s~~~dg~i~vwd~~~~--------~~~~~~~~~~~h~~~v~~~~~s~d-~~~l~l~s~s~d~~i~vwd~~~~~~~~~~ 481 (1088)
+|+.|+.|+|||+.++ +.+.....+.+|...|.+++|+|+ +. ++++++.||+|++||++++..+...
T Consensus 111 ~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~~ 188 (434)
T 2oit_A 111 MMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCAT 188 (434)
T ss_dssp EEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEEE
T ss_pred EeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceeec
Confidence 7888999999999865 222334456789999999999998 55 8999999999999999999877777
Q ss_pred ccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCC-------CCceEEEEEccCCCEEEEEeeCC---
Q 001386 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTSK--- 551 (1088)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~s~~g~~l~~~~~~~--- 551 (1088)
.+|...|.+++|++ +|.+|++|+.||.|++||++ ......+..+ ...+.+++|++++.++++.....
T Consensus 189 ~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~ 265 (434)
T 2oit_A 189 LPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL 265 (434)
T ss_dssp ECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred cCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence 78999999999954 67899999999999999998 4444444332 22789999999998887655321
Q ss_pred CCceeEEEEeCCCCc-----eeEEEecc----ccccccEEEEEEeCCCCEEEEEeC-CCcEEEEEc
Q 001386 552 EGESFLVEWNESEGA-----IKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGD-DHVIKIWDM 607 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~-----~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~s~-dg~i~iwd~ 607 (1088)
+....+++|++.... ....+... ...+.+...+.+-++.+.+++++. .+.|.+...
T Consensus 266 ~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 266 ETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp SSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred CCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 112348899987542 11222211 011223334444577777776553 344555543
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.83 E-value=1e-17 Score=187.11 Aligned_cols=301 Identities=14% Similarity=0.139 Sum_probs=197.4
Q ss_pred eecCCCCeEEEEEcc----cCcEEEEecC--CCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE
Q 001386 341 DFHPVQHTLLLVGTN----VGDTGLWDVN--SGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1088)
Q Consensus 341 ~~spdg~~lla~g~~----dg~i~iwd~~--~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~ 414 (1088)
+..+... .+.+|+. ++.|.+|++. +|+..... .. +...+..++|+|||++|+++
T Consensus 8 ~~~~~~~-~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~------------------~~-~~~~p~~l~~spdg~~l~~~ 67 (361)
T 3scy_A 8 STTDSEL-TMLVGTYTSGNSKGIYTFRFNEETGESLPLS------------------DA-EVANPSYLIPSADGKFVYSV 67 (361)
T ss_dssp CGGGGEE-EEEEEECCSSSCCEEEEEEEETTTCCEEEEE------------------EE-ECSCCCSEEECTTSSEEEEE
T ss_pred hhCCCce-EEEEEeccCCCCCCEEEEEEeCCCCCEEEee------------------cc-cCCCCceEEECCCCCEEEEE
Confidence 3344444 4566643 5689999774 45433210 11 66778889999999999999
Q ss_pred eCC----CEEEEEEccCC-CcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe------cc
Q 001386 415 YSK----HIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF------EG 483 (1088)
Q Consensus 415 ~~d----g~i~vwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~------~~ 483 (1088)
+.+ +.|.+|++... ..+..+.....+......+++ +++. ++++...++.|.+|++.....+..+ .+
T Consensus 68 ~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g 144 (361)
T 3scy_A 68 NEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFKG 144 (361)
T ss_dssp ECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCC
T ss_pred EccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEccC
Confidence 875 79999998763 223333344456667888888 7773 3444446889999999754433211 11
Q ss_pred --------CCccEEEEeeeeeCCceEEEEEe-cCCeEEEEECCCCCc-------------eEEecCCCCceEEEEEccCC
Q 001386 484 --------HGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGA-------------RVDYDAPGLGCTRMAYSANG 541 (1088)
Q Consensus 484 --------~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~-------------~~~~~~~~~~v~~~~~s~~g 541 (1088)
+...+.+++| +++|+++++++ .++.|.+|+++.... .............++|+|||
T Consensus 145 ~~~~~~~~~~~~~~~~~~--spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg 222 (361)
T 3scy_A 145 SGPDKERQTMPHLHCVRI--TPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG 222 (361)
T ss_dssp CCSCTTTCSSCCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTS
T ss_pred CCCCccccCCCcceEEEE--CCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCC
Confidence 1223567888 45777665554 589999999886542 12223344567899999999
Q ss_pred CEEEEEeeCCCCceeEEEEeCCCCce--eEEEeccccccccEEEEEEeCCCCEEEEEeC--CCcEEEEEcC--CCe--ee
Q 001386 542 RRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMN--KVQ--LL 613 (1088)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~--dg~i~iwd~~--~~~--~~ 613 (1088)
++++++.. .++.|.+|++.+++. +..+.....+......++|+|+|++++++.. ++.|.+|++. +++ .+
T Consensus 223 ~~l~v~~~---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~ 299 (361)
T 3scy_A 223 KFAYLINE---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKV 299 (361)
T ss_dssp SEEEEEET---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEE
T ss_pred CEEEEEcC---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEe
Confidence 99888762 356799999987754 3333333322345689999999999977665 4899999985 454 34
Q ss_pred EEEeCCCCCCCCceEEEecCCCEEEEEe-CCCcEEEEeC--CCCCccccc-ccccCcceeeee
Q 001386 614 TTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILET--PESNSVDAA-GVLSDNLRKLSV 672 (1088)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~--~~~~~~~~~-~~~~~~v~~~~~ 672 (1088)
..+.. + ..+..++|+|||++|++++ .++.|.+|++ .+++..... ..+...+.|+.|
T Consensus 300 ~~~~~-g--~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~ 359 (361)
T 3scy_A 300 GYQLT-G--IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKF 359 (361)
T ss_dssp EEEEC-S--SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred eEecC-C--CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEE
Confidence 44443 2 2468999999999888887 5789999654 455544332 223334555554
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.83 E-value=3.2e-19 Score=213.24 Aligned_cols=236 Identities=16% Similarity=0.172 Sum_probs=176.8
Q ss_pred CCCeEEEEECCCCCEEEEEeC-CCEEEEEEccCCCcccceeEeccCC-CCEEEEEecCCCCcEEEEEEeC---CCcEEEE
Q 001386 396 GVSVNRVVWSPDGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGD---DKTIKVW 470 (1088)
Q Consensus 396 ~~~V~~l~~s~dg~~las~~~-dg~i~vwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~s~---d~~i~vw 470 (1088)
..+|.+++|+|||++||+++. ||+++||++.+++.. .+..|. ..+..++|+|| + ++++++. +...++|
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----~lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----KLNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHALF 93 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE----ECCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE----eeecccccccccccCCCC-e--EEEEeccCCCCcceEEE
Confidence 467999999999999999887 999999999776533 355555 68999999999 5 6776664 4555665
Q ss_pred eCCC---CceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001386 471 DAVT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1088)
Q Consensus 471 d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 547 (1088)
.+.. +... .+.... .+...+|++++++..+++++.++.. +||+++++.......+. .+++|||||++|+++
T Consensus 94 ~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~ 167 (582)
T 3o4h_A 94 KVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG---FGFVSDIRGDLIAGL 167 (582)
T ss_dssp EEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS---CEEEEEEETTEEEEE
T ss_pred EEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC---ceEEECCCCCEEEEE
Confidence 5433 3332 443332 2335577777665566666555554 99998876555443333 789999999999988
Q ss_pred eeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCC--cEEEEEcCCCeeeEEEeCCCCCCCC
Q 001386 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--VIKIWDMNKVQLLTTIDAGGGLPEN 625 (1088)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1088)
+.+..+...|++||+.+++.. .+..+. ..+..++|+|||+.|+++..++ .|++||+.+++.. .+..+. ..+
T Consensus 168 ~~~~~~~~~i~~~d~~~g~~~-~l~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~--~~~ 240 (582)
T 3o4h_A 168 GFFGGGRVSLFTSNLSSGGLR-VFDSGE---GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS--KDF 240 (582)
T ss_dssp EEEETTEEEEEEEETTTCCCE-EECCSS---CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC--SHH
T ss_pred EEcCCCCeEEEEEcCCCCCce-EeecCC---CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC--cCh
Confidence 765444577999999988765 556655 7789999999999999888888 8999999998877 544332 235
Q ss_pred ceEE--------EecCCCEEEEEeCCCcEEEEeC
Q 001386 626 PRIC--------FNKNGTLLAVIANENRIKILET 651 (1088)
Q Consensus 626 ~~v~--------~s~~~~~l~~~~~dg~i~iwd~ 651 (1088)
..++ |+|||.++++++.++.+++|++
T Consensus 241 ~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 241 SSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 5666 9999999999999999999998
No 161
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.83 E-value=3.5e-18 Score=209.74 Aligned_cols=380 Identities=12% Similarity=0.028 Sum_probs=242.7
Q ss_pred eEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccE--EEEEEeCCCCEEEEEeCC---------C
Q 001386 532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV--SVVHFDTAKDQILAAGDD---------H 600 (1088)
Q Consensus 532 v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~s~d---------g 600 (1088)
..+++|+|||++++++ ++.|++||+.+++....+.++......+ ..+.|+|||++|+.++.+ +
T Consensus 19 ~~~~~w~~dg~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCEEECSSSEEEEEE------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccEECCCCcEEEEc------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 4578999999988875 3469999999999888888776222222 448899999999998876 5
Q ss_pred cEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccc-cccCcceeeeecCCCcce
Q 001386 601 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPISTVT 679 (1088)
Q Consensus 601 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~ 679 (1088)
.+.+||+.+++... +..+ ...+...+|||||+.||.+. ++.|++|+..++...+... ++...
T Consensus 93 ~~~~~d~~~~~~~~-l~~~--~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~------------- 155 (740)
T 4a5s_A 93 SYDIYDLNKRQLIT-EERI--PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDI------------- 155 (740)
T ss_dssp EEEEEETTTTEECC-SSCC--CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTT-------------
T ss_pred EEEEEECCCCcEEE-cccC--CCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccc-------------
Confidence 67799999988654 3322 23578999999999999885 6799999998765432111 00000
Q ss_pred eccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccc-cce
Q 001386 680 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVH 758 (1088)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d-g~v 758 (1088)
+..+.. --+|.-+ -......++|||||+.|+....| +.+
T Consensus 156 ---------------------~~~g~~---~~v~~ee----------------~~~~~~~~~wSpDg~~la~~~~d~~~v 195 (740)
T 4a5s_A 156 ---------------------IYNGIT---DWVYEEE----------------VFSAYSALWWSPNGTFLAYAQFNDTEV 195 (740)
T ss_dssp ---------------------EEESBC---CHHHHHH----------------TSSSSBCEEECTTSSEEEEEEEECTTC
T ss_pred ---------------------eecCcc---cccccch----------------hcCCCcceEECCCCCEEEEEEEcccCC
Confidence 000000 0000000 00223467999999999888765 448
Q ss_pred EEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCC---ce--eEE
Q 001386 759 LMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMT---FK--TIL 833 (1088)
Q Consensus 759 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~---~~--~~~ 833 (1088)
.+|++...... . .+...+..+.+.+.|... ...+|.+||+.+ ++ ...
T Consensus 196 ~~~~~~~~~~~-------------~------------~~~~~~~~~~yp~~G~~~---~~~~l~v~d~~~~~~~~~~~~~ 247 (740)
T 4a5s_A 196 PLIEYSFYSDE-------------S------------LQYPKTVRVPYPKAGAVN---PTVKFFVVNTDSLSSVTNATSI 247 (740)
T ss_dssp CEEEEEECCST-------------T------------CSSCEEEEEECCBTTSCC---CEEEEEEEETTSCCSSSCCCEE
T ss_pred ceEEEEeecCC-------------C------------CCCCcceeecCCCCcCcC---CeeEEEEEECCCCCCCCcceEE
Confidence 88876432210 0 133445566776666421 123689999998 73 233
Q ss_pred Eec------CCCCCeEEEEEcCCCCcEEEEEeC----CCeEEEEEcCCce----ee--eee--ccccCCee-----EEEE
Q 001386 834 TIM------PPSPTATSLAFNPHDNNVIAIGMD----DSTILIYNARSSE----VI--SKL--EGHSKRVT-----GLVF 890 (1088)
Q Consensus 834 ~~~------~~~~~i~~l~~sp~d~~~lasg~~----dg~i~lwd~~~~~----~~--~~l--~~h~~~V~-----~l~~ 890 (1088)
.+. ++...+..++||| |+++++.... +..|++||+.+++ +. ..+ .+|.+.|. .++|
T Consensus 248 ~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~f 326 (740)
T 4a5s_A 248 QITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHF 326 (740)
T ss_dssp EECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEE
T ss_pred EecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceE
Confidence 343 3677899999999 7886665533 3479999999987 32 222 45665554 7899
Q ss_pred CCCCCEEE-EEeC-C--CcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeC-----C--eEEEE
Q 001386 891 SDALNILV-SSGG-D--AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----T--HLAIY 958 (1088)
Q Consensus 891 s~dg~~la-s~s~-D--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d-----~--~i~vw 958 (1088)
||||+.|+ ..+. + ..|++||+.+++. .+...+.. .+..+. ++|++.|+. +.. + .|+..
T Consensus 327 spDG~~l~~~~s~~~G~~~l~~~~~~~~~~-----~~lT~g~~----~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v 396 (740)
T 4a5s_A 327 TLDGNSFYKIISNEEGYRHICYFQIDKKDC-----TFITKGTW----EVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKI 396 (740)
T ss_dssp CTTSSEEEEEEECTTSCEEEEEEETTCSSC-----EESCCSSS----CEEEEE-EECSSEEEEEESCGGGCTTCBEEEEE
T ss_pred cCCCCEEEEEEEcCCCceEEEEEECCCCce-----EecccCCE----EEEEEE-EEeCCEEEEEEecCCCCCceeEEEEE
Confidence 99999887 6664 3 4688889887542 22233332 244443 255777766 432 2 45555
Q ss_pred EcCcceeeeeeec---CCCcCEEEEEEeeCCCEEEEEeCC---CcEEEEEcCCCceEEEec
Q 001386 959 EAEELTCLKQWFP---ISSVPISQATFSCDCRMVFTSFVD---GTLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 959 d~~~~~~~~~~~~---~h~~~v~~l~fs~dg~~l~s~s~d---g~v~vwd~~~~~~~~~~~ 1013 (1088)
++..+.....+.. +....+..+.|||||++++..... ..+.+++..+++....+.
T Consensus 397 ~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l~ 457 (740)
T 4a5s_A 397 QLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE 457 (740)
T ss_dssp ETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred ECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEec
Confidence 6655443222221 234678899999999987755443 468888988887655443
No 162
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=3.1e-18 Score=190.39 Aligned_cols=283 Identities=11% Similarity=0.062 Sum_probs=193.2
Q ss_pred eeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEE-EeC
Q 001386 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV-AYS 416 (1088)
Q Consensus 338 ~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las-~~~ 416 (1088)
+.++++++++ ++++++.+++|.+||+.+++.+.... .+....+..++|+|||+++++ +..
T Consensus 3 ~g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~s~dg~~~~v~~~~ 63 (349)
T 1jmx_B 3 TGPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCV------------------MPDKFGPGTAMMAPDNRTAYVLNNH 63 (349)
T ss_dssp -CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEE------------------CSSCCSSCEEEECTTSSEEEEEETT
T ss_pred ccccccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEe------------------cCCCCCCceeEECCCCCEEEEEeCC
Confidence 3567888887 78899999999999999998765421 112225788999999997654 456
Q ss_pred CCEEEEEEccCCCcccceeEec-cC-----CCCEEEEEecCCCCcEEEEEEeCC------------CcEEEEeCCCCce-
Q 001386 417 KHIVQLYAYHGGSDARQQLEID-AH-----VGNVNDLAFSAPCKQISVITCGDD------------KTIKVWDAVTGSR- 477 (1088)
Q Consensus 417 dg~i~vwd~~~~~~~~~~~~~~-~h-----~~~v~~~~~s~d~~~l~l~s~s~d------------~~i~vwd~~~~~~- 477 (1088)
++.|.+||+.+++.... +. .+ ...+..++|+|||+ .+++++.+ +.|.+||+.+++.
T Consensus 64 ~~~i~~~d~~t~~~~~~---~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 64 YGDIYGIDLDTCKNTFH---ANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp TTEEEEEETTTTEEEEE---EESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred CCcEEEEeCCCCcEEEE---EEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 88999999998875542 22 22 23378899999999 56666654 8999999998543
Q ss_pred --eEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCC------------------------c
Q 001386 478 --TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL------------------------G 531 (1088)
Q Consensus 478 --~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------------------------~ 531 (1088)
+..+. +...+.+++| +++++ +++++ +.|.+||+.+++....+..... .
T Consensus 139 ~~~~~~~-~~~~~~~~~~--s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (349)
T 1jmx_B 139 KPVRTFP-MPRQVYLMRA--ADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 212 (349)
T ss_dssp CCSEEEE-CCSSCCCEEE--CTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred ceeeecc-CCCcccceeE--CCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence 34444 3345777777 45666 55543 4499999988877665543320 2
Q ss_pred eEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEE-EeccccccccEEEEEEeC-CCCEEEEEeCCCcEEEEEcCC
Q 001386 532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNK 609 (1088)
Q Consensus 532 v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~ 609 (1088)
...+++++++........ ....+..+|..+++.... +... ...+..++|+| ++++++++ ++.|.+||+.+
T Consensus 213 ~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~ 284 (349)
T 1jmx_B 213 LYTIARFKDDKQDPATAD---LLYGYLSVDLKTGKTHTQEFADL---TELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ 284 (349)
T ss_dssp EEEEEEC-------CCCE---EEEEEEEEETTTCCEEEEEEEEC---SSCEEEEEECSSCTTEEEEE--ESEEEEEETTT
T ss_pred eeeeeecCCCcCCccccc---cceeEEEEeccCCcEEecccccC---CCcceeeEecCCCCCEEEEE--cCeEEEEECcc
Confidence 344666655532211100 011233356665543211 1112 35788999999 99999888 88999999999
Q ss_pred CeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccc
Q 001386 610 VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 661 (1088)
Q Consensus 610 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 661 (1088)
++.+..+.... .+.+++|+|++++|++++.++.|.+||..+++.+..+.
T Consensus 285 ~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 285 RKLIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp TEEEEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred CeEEEEEcCCC---CccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 99888887543 36789999999988888889999999999887665544
No 163
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=1.7e-17 Score=184.39 Aligned_cols=297 Identities=9% Similarity=0.019 Sum_probs=198.8
Q ss_pred eCCceEEEEEecCCeEEEEECCCCCceEEecCCC-CceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEecc
Q 001386 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1088)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1088)
..++.++++++.++.|.+||+.+++....+..+. ..+..++|+|+|++++++.. .++.|.+||+.+++.+..+...
T Consensus 8 ~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~---~~~~i~~~d~~t~~~~~~~~~~ 84 (349)
T 1jmx_B 8 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTFHANLS 84 (349)
T ss_dssp CTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEESC
T ss_pred cCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC---CCCcEEEEeCCCCcEEEEEEcc
Confidence 4567899999999999999999887766665443 25678999999998776652 3567999999999888777643
Q ss_pred ccc---cccEEEEEEeCCCCEEEEEeCC------------CcEEEEEcCCCee---eEEEeCCCCCCCCceEEEecCCCE
Q 001386 575 QLQ---HNSVSVVHFDTAKDQILAAGDD------------HVIKIWDMNKVQL---LTTIDAGGGLPENPRICFNKNGTL 636 (1088)
Q Consensus 575 ~~~---~~~v~~~~~~~~~~~l~~~s~d------------g~i~iwd~~~~~~---~~~~~~~~~~~~v~~v~~s~~~~~ 636 (1088)
... ...+..++|+|+|+++++++.+ +.|.+||+.+++. +..+..+. .+.+++|+|+|+
T Consensus 85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~- 160 (349)
T 1jmx_B 85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR---QVYLMRAADDGS- 160 (349)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS---SCCCEEECTTSC-
T ss_pred cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCC---cccceeECCCCc-
Confidence 200 1236788999999999998865 8999999988543 34444332 478899999999
Q ss_pred EEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceecccc
Q 001386 637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1088)
Q Consensus 637 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 716 (1088)
+++++ +.|.+||..+++....+....... + . ......+.+|...
T Consensus 161 l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~----------------------------~----~--~~~~~~~~~~~~~ 204 (349)
T 1jmx_B 161 LYVAG--PDIYKMDVKTGKYTVALPLRNWNR----------------------------K----G--YSAPDVLYFWPHQ 204 (349)
T ss_dssp EEEES--SSEEEECTTTCCEEEEECSTTCCC----------------------------T----T--BCCCBCCCCCCCC
T ss_pred EEEcc--CcEEEEeCCCCceeccccccccCC----------------------------c----c--ccCccceeeecCC
Confidence 55554 349999998876554332211000 0 0 0000112223211
Q ss_pred ccCCCcceeeecCCccccccEEEEEEecCCceE-----------EEeccccceEEEEccCCCCCCCCCCCCcccCCCCCC
Q 001386 717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAI-----------FALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGP 785 (1088)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l-----------~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1088)
... . .......+++++++... .....++.+.+|++.
T Consensus 205 ~~~----~--------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 251 (349)
T 1jmx_B 205 SPR----H--------EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA--------------------- 251 (349)
T ss_dssp CTT----C--------EEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE---------------------
T ss_pred Ccc----e--------eEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc---------------------
Confidence 000 0 00123345555544211 122223444444321
Q ss_pred cceeeccCCCCCCCCeeEEEEec-CCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeE
Q 001386 786 QFMVNDTTDSNSQEAVPCFALSK-NDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTI 864 (1088)
Q Consensus 786 ~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i 864 (1088)
.+...+.+++++| |+++++++ ++.|.+||+.+++.+..+.. ...+.+++|+| ++++|++++.++.|
T Consensus 252 ----------~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~v 318 (349)
T 1jmx_B 252 ----------DLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDK-KGDKLYLGGTFNDL 318 (349)
T ss_dssp ----------ECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC-SSCCCEEEECS-SSSCEEEESBSSEE
T ss_pred ----------cCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcC-CCCccceEECC-CCCEEEEecCCCeE
Confidence 1345678899999 99999988 88999999999998887763 34577899999 78888888889999
Q ss_pred EEEEcCCceeeeeeccc
Q 001386 865 LIYNARSSEVISKLEGH 881 (1088)
Q Consensus 865 ~lwd~~~~~~~~~l~~h 881 (1088)
++||+.+++.+..+..+
T Consensus 319 ~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 319 AVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEETTTTEEEEEEECS
T ss_pred EEEeccccceeeeeecC
Confidence 99999999988877654
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.80 E-value=4.8e-18 Score=191.97 Aligned_cols=256 Identities=11% Similarity=0.019 Sum_probs=177.3
Q ss_pred ecCCCCCeEE-----EEECCCCCEEEEEeC-CC--EEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeC
Q 001386 392 VRDPGVSVNR-----VVWSPDGSLLGVAYS-KH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 463 (1088)
Q Consensus 392 ~~~h~~~V~~-----l~~s~dg~~las~~~-dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~ 463 (1088)
+..|...... .+|||||++||+++. ++ .|.+||+.+++... ...++...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 5556666665 899999999999987 66 48888998886443 2345555555778999999 7888888
Q ss_pred CCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEe----------------------cCCeEEEEECCCCCc
Q 001386 464 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------------------VDGKIKAWLYDSLGA 521 (1088)
Q Consensus 464 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------------------~dg~i~iwd~~~~~~ 521 (1088)
++.|++||+.+++....+..+...+....+..++++.+++... .+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 8999999999998877777677666656655577887777432 346799999988765
Q ss_pred eEEecCCCCceEEEEEcc-CCCEEEEEeeCCC--CceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeC
Q 001386 522 RVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKE--GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 598 (1088)
Q Consensus 522 ~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~ 598 (1088)
... ..+...+..++|+| ||+.|+.+..... ....|+++|..++... .+..+. ....+..+.|+|||+.|+..+.
T Consensus 181 ~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~-~~~~~~~~~~spdg~~l~~~~~ 257 (388)
T 3pe7_A 181 TVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHA-EGESCTHEFWVPDGSALVYVSY 257 (388)
T ss_dssp EEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCC-TTEEEEEEEECTTSSCEEEEEE
T ss_pred EEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCC-CCcccccceECCCCCEEEEEec
Confidence 443 34455688999999 9999988775321 1446888998766543 333322 0125778899999998866443
Q ss_pred -CC----cEEEEEcCCCeeeEEEeCCCC--C-CCCceEEEecCCCEEEEE---------eCCCcEEEEeCCCCC
Q 001386 599 -DH----VIKIWDMNKVQLLTTIDAGGG--L-PENPRICFNKNGTLLAVI---------ANENRIKILETPESN 655 (1088)
Q Consensus 599 -dg----~i~iwd~~~~~~~~~~~~~~~--~-~~v~~v~~s~~~~~l~~~---------~~dg~i~iwd~~~~~ 655 (1088)
++ .|++||+.+++.......... . ......+|+|||+.|+.. ..+..|++||+.+++
T Consensus 258 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 258 LKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp ETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred CCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence 22 399999999875433222210 0 012335799999988764 445689999988654
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.80 E-value=2.5e-17 Score=183.72 Aligned_cols=249 Identities=9% Similarity=0.103 Sum_probs=170.4
Q ss_pred CCeeEEEEecCCCEEEEEeCCcEEEEEcC-CceeEEEecC-CCCCeEEEEEcCCCCcE--EEEEe-------------CC
Q 001386 799 EAVPCFALSKNDAYLFSASGGVISLYIVM-TFKTILTIMP-PSPTATSLAFNPHDNNV--IAIGM-------------DD 861 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~dg~i~iwd~~-~~~~~~~~~~-~~~~i~~l~~sp~d~~~--lasg~-------------~d 861 (1088)
..+..++++|||++|++++.+.|.+|++. +++....... ..+.+.+++|+| ++++ +++++ .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecCC
Confidence 46778999999999988885599999997 7776543321 112356689999 7884 55553 68
Q ss_pred CeEEEEEcC-Cceeeeeec----cccCCeeEEEECCCCCEEEEEeC-CCcEEEEEcC-CCceeeeeeeecCCCCccCCCC
Q 001386 862 STILIYNAR-SSEVISKLE----GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPS 934 (1088)
Q Consensus 862 g~i~lwd~~-~~~~~~~l~----~h~~~V~~l~~s~dg~~las~s~-Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~ 934 (1088)
|.+.+|++. +++....+. .+...+.+++|+|||++|++++. ++.|++|+++ +++......+.... + ...
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~---g~~ 194 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-P---GDH 194 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-T---TCC
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-C---CCC
Confidence 999999997 466554443 24567999999999999887764 6789999998 66543222222111 0 124
Q ss_pred eEEEEEcCCCCEEEEEe--CCeEEEEEcC--cceeee---ee--ec----CCCc------CEEEEE-EeeCCCEEEEEeC
Q 001386 935 ETHIQFHKDQTRFLLVH--ETHLAIYEAE--ELTCLK---QW--FP----ISSV------PISQAT-FSCDCRMVFTSFV 994 (1088)
Q Consensus 935 v~~~~fs~dg~~l~~~~--d~~i~vwd~~--~~~~~~---~~--~~----~h~~------~v~~l~-fs~dg~~l~s~s~ 994 (1088)
+.+++|+|||++++++. ++.|.+|++. +|+... .+ .. +|.. .+..++ |||||++|+++..
T Consensus 195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred CCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence 78999999999998853 5789999765 565421 11 11 1222 588999 9999999887764
Q ss_pred C-C-----cEEEEEcC-CCceEEEeccccccCCCCccccccceEEEECCC--CCCEEEEEeCC-CcEEEEeCCCC
Q 001386 995 D-G-----TLSIHEAS-NLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPL--KPTQFAVGLTN-GEVYVIEPNEP 1059 (1088)
Q Consensus 995 d-g-----~v~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--d~~~l~~~~~d-g~v~~w~l~~~ 1059 (1088)
+ + +|.+|++. +|++........... ..+..++|+|. ||++|++++.+ ++|.+|++...
T Consensus 275 ~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~-------~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT-------SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSCEEEEEEEEECSS-------CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCeEEEEEECCCCCEEEeeeeeecCC-------CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 3 2 89999996 676543211000001 11234778885 57888888765 89999998654
No 166
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.78 E-value=3.4e-17 Score=185.56 Aligned_cols=300 Identities=11% Similarity=0.007 Sum_probs=194.4
Q ss_pred chhheeecccCCCC-----ceeeeecCCCCeEEEEEccc--CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCC
Q 001386 323 PKTVAQTLIEGSSS-----PMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 395 (1088)
Q Consensus 323 p~~~~~~l~~h~~~-----V~~v~~spdg~~lla~g~~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h 395 (1088)
....+..|..+... +..++|||||++++++...+ ..|.+||+.+++.... ..++
T Consensus 19 ~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l-------------------~~~~ 79 (396)
T 3c5m_A 19 TQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL-------------------TEGK 79 (396)
T ss_dssp TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC-------------------CCSS
T ss_pred CCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe-------------------ecCC
Confidence 34445556555433 88999999999655555443 3688889988865431 1122
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEE-------------------EEecCCCCcE
Q 001386 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND-------------------LAFSAPCKQI 456 (1088)
Q Consensus 396 ~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~-------------------~~~s~d~~~l 456 (1088)
......+.|||||++|+.++.++.|++||+.+++... ....+...... ++|+|+++.
T Consensus 80 ~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~- 155 (396)
T 3c5m_A 80 GDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW- 155 (396)
T ss_dssp CBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH-
T ss_pred CCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc-
Confidence 2223347899999999999999999999999886432 22223332222 356788873
Q ss_pred EEEEE-----eCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecC------CeEEEEECCCCCceEEe
Q 001386 457 SVITC-----GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDY 525 (1088)
Q Consensus 457 ~l~s~-----s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~ 525 (1088)
++.+ ..+..|.+||+.+++..... .+...+..+.|++. ++..|+..+.+ ..|.+||++........
T Consensus 156 -~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 232 (396)
T 3c5m_A 156 -EKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK 232 (396)
T ss_dssp -HHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS
T ss_pred -eeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEee
Confidence 3332 45678999999998865544 46677888888541 45556655543 35888888765543333
Q ss_pred cCC-CCceEEEEEccCCCEEEEEeeCC-CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeC-CCCEEEEEe-----
Q 001386 526 DAP-GLGCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAG----- 597 (1088)
Q Consensus 526 ~~~-~~~v~~~~~s~~g~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s----- 597 (1088)
... ...+..++|+|||++|+.++... .....|++||+.+++....... . ... +.|+| +|+.+++++
T Consensus 233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~----~~~-~~~s~~dg~~l~~~~~~~p~ 306 (396)
T 3c5m_A 233 EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-P----PCS-HLMSNFDGSLMVGDGCDAPV 306 (396)
T ss_dssp CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C----SEE-EEEECSSSSEEEEEECCC--
T ss_pred ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-C----CCC-CCccCCCCceEEEecCCcce
Confidence 321 23578899999999888776432 2224599999998876543322 2 123 88999 999888754
Q ss_pred -----------CCCcEEEEEcCCCeeeEEEeCCCCC--------CCCceEEEecCCCEEEEEeC-CCcEEEE--eCCCC
Q 001386 598 -----------DDHVIKIWDMNKVQLLTTIDAGGGL--------PENPRICFNKNGTLLAVIAN-ENRIKIL--ETPES 654 (1088)
Q Consensus 598 -----------~dg~i~iwd~~~~~~~~~~~~~~~~--------~~v~~v~~s~~~~~l~~~~~-dg~i~iw--d~~~~ 654 (1088)
.++.|++||+.+++........... ..+..++|+|||+.|+.++. ++...+| ++.++
T Consensus 307 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 307 DVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES 385 (396)
T ss_dssp --------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred eeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence 3478999999888754333222110 01456899999998887765 4554554 44444
No 167
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=1.1e-16 Score=178.60 Aligned_cols=250 Identities=9% Similarity=0.060 Sum_probs=172.8
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEEcc-CCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEe-----------
Q 001386 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG----------- 462 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~-~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s----------- 462 (1088)
....+..++|+|||++|++++.+ .|.+|++. +++.... .....+ +.+.+++|+|||+.+++++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~-~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHE-ASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEE-EEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEe-eEeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence 34568889999999999998888 89999997 7654321 111111 235678999999853355553
Q ss_pred --CCCcEEEEeCC-CCceeEEec----cCCccEEEEeeeeeCCceEEEEEec-CCeEEEEECC-CCCceE--Eec--CCC
Q 001386 463 --DDKTIKVWDAV-TGSRTYSFE----GHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYD-SLGARV--DYD--APG 529 (1088)
Q Consensus 463 --~d~~i~vwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~-~~~~~~--~~~--~~~ 529 (1088)
.++++.+|++. +|+....+. .+...+.+++| +++|++++++.. ++.|++||++ +++... .+. .+.
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g 192 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVF--DPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG 192 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEE--CCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence 68999999997 476654443 24567888888 457777777654 6899999998 555432 232 235
Q ss_pred CceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC--CCceeE---EEecccc----ccc------cEEEEE-EeCCCCEE
Q 001386 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAIKR---TYQGLQL----QHN------SVSVVH-FDTAKDQI 593 (1088)
Q Consensus 530 ~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~--~~~~~~---~~~~~~~----~~~------~v~~~~-~~~~~~~l 593 (1088)
..+..++|+|||++++++.. .++.|.+|+.. +++... .+..... +.. .+..++ |+|||+++
T Consensus 193 ~~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l 269 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM 269 (365)
T ss_dssp CCEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred CCCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence 67899999999999988763 24467787654 565432 2322110 111 588899 99999998
Q ss_pred EEEeCC-C-----cEEEEEcC-CCeeeEE---EeCCCCCCCCceEEEec---CCCEEEEEeCC-CcEEEEeCCCC
Q 001386 594 LAAGDD-H-----VIKIWDMN-KVQLLTT---IDAGGGLPENPRICFNK---NGTLLAVIANE-NRIKILETPES 654 (1088)
Q Consensus 594 ~~~s~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~v~~s~---~~~~l~~~~~d-g~i~iwd~~~~ 654 (1088)
+++..+ . .|.+|++. +++.... ..... .....++|+| ||++|++++.+ +.|.+|++...
T Consensus 270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~--~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT--SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS--CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCC--CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 876543 2 89999996 5665432 22222 2357899999 89999999864 89999998754
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.77 E-value=1.8e-16 Score=175.62 Aligned_cols=297 Identities=11% Similarity=0.119 Sum_probs=201.5
Q ss_pred CCCCeEEEEE-----cccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeC--
Q 001386 344 PVQHTLLLVG-----TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-- 416 (1088)
Q Consensus 344 pdg~~lla~g-----~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~-- 416 (1088)
+++++++++. ..|+.|.+||..+++.+.. +..+..+ .++|+|||++|++++.
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spdg~~lyv~~~~~ 71 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGM-------------------VPTAFNG--HVQVSNDGKKIYTMTTYH 71 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEE-------------------EECCEEE--EEEECTTSSEEEEEEEEE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEE-------------------ecCCCCC--ceEECCCCCEEEEEEecc
Confidence 3666554443 2478999999999987654 2233344 8999999999999863
Q ss_pred --------CCEEEEEEccCCCcccceeEecc---CCCCEEEEEecCCCCcEEEEEEe--CCCcEEEEeCCCCceeEE-ec
Q 001386 417 --------KHIVQLYAYHGGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYS-FE 482 (1088)
Q Consensus 417 --------dg~i~vwd~~~~~~~~~~~~~~~---h~~~v~~~~~s~d~~~l~l~s~s--~d~~i~vwd~~~~~~~~~-~~ 482 (1088)
++.|.+||+.+++.+..+..... +......++|+|||+ +|+++. .+++|.+||+.+++.+.. +.
T Consensus 72 ~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~--~l~v~n~~~~~~v~v~d~~~~~~~~~~i~ 149 (361)
T 2oiz_A 72 ERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK--FIVLQNASPATSIGIVDVAKGDYVEDVTA 149 (361)
T ss_dssp TTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS--EEEEEEESSSEEEEEEETTTTEEEEEEGG
T ss_pred cccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC--EEEEECCCCCCeEEEEECCCCcEEEEEec
Confidence 56799999998876654322211 224567899999999 455554 368999999999998887 65
Q ss_pred cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceE-------EecCCCCceEEEEEccCCCEEEEEeeCCCCce
Q 001386 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-------DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1088)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 555 (1088)
... . ..+.+.+.. ...+++.+.||.+.+|+++...... .+.....+ ..+.+++++..++..+. ++
T Consensus 150 ~~~-~-~~v~~~p~~-~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~----~~ 221 (361)
T 2oiz_A 150 AAG-C-WSVIPQPNR-PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSY----YG 221 (361)
T ss_dssp GTT-E-EEEEECTTS-SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBT----TS
T ss_pred CCC-c-ceeEEcCCC-CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeC----CC
Confidence 322 1 223343332 2577889999999999987533322 11122222 23345677877776653 34
Q ss_pred eEEEEeCCCCcee--EEEeccc---cc----cccEEEEEEeCCCCEEEEEeC-----------CCcEEEEEcCCCeeeEE
Q 001386 556 FLVEWNESEGAIK--RTYQGLQ---LQ----HNSVSVVHFDTAKDQILAAGD-----------DHVIKIWDMNKVQLLTT 615 (1088)
Q Consensus 556 ~i~iwd~~~~~~~--~~~~~~~---~~----~~~v~~~~~~~~~~~l~~~s~-----------dg~i~iwd~~~~~~~~~ 615 (1088)
.++++|...+... ..+.... .. ......++|+|+++.++++.. .+.|.+||+.+++.+..
T Consensus 222 ~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~ 301 (361)
T 2oiz_A 222 NVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR 301 (361)
T ss_dssp EEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE
T ss_pred eEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE
Confidence 6999998755422 2221100 00 011112689999988887653 34899999999999999
Q ss_pred EeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCC--CcccccccccCcceeeeecCCC
Q 001386 616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES--NSVDAAGVLSDNLRKLSVNPIS 676 (1088)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~p~~ 676 (1088)
+..+. ...++|+|||++|++++. +.|.+||..++ +.+..+.........++++|.+
T Consensus 302 i~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G 359 (361)
T 2oiz_A 302 IPGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVG 359 (361)
T ss_dssp EECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCS
T ss_pred EecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCC
Confidence 98664 689999999999998887 99999999999 7777765555666667777543
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.76 E-value=3.6e-16 Score=173.09 Aligned_cols=304 Identities=10% Similarity=0.096 Sum_probs=204.7
Q ss_pred cCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEee------CCCCceeEEEEeCCCCceeEEEecccc---c
Q 001386 507 VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT------SKEGESFLVEWNESEGAIKRTYQGLQL---Q 577 (1088)
Q Consensus 507 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~------~~~~~~~i~iwd~~~~~~~~~~~~~~~---~ 577 (1088)
.|+.|.+||..+++....+.....+ .++|+|||++++++.. .++.++.|.+||..+++.+..+..... +
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~ 106 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG 106 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence 4789999999988877766655444 8999999999998863 122356799999999998888764320 1
Q ss_pred cccEEEEEEeCCCCEEEEEeC--CCcEEEEEcCCCeeeEE-EeCCCCCCCCceEEEecCC-CEEEEEeCCCcEEEEeCCC
Q 001386 578 HNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKVQLLTT-IDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPE 653 (1088)
Q Consensus 578 ~~~v~~~~~~~~~~~l~~~s~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~ 653 (1088)
......++++|+|++++++.. ++.|.+||+.+++.+.. +.... ...+.+.|++ ..+++.+.||.+.+|+...
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~ 182 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFMTICGDGGLLTINLGE 182 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEEEEETTSSEEEEEECT
T ss_pred CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEEEECCCCcEEEEEECC
Confidence 134567899999999999864 68999999999998887 65432 2335677765 6778888999999988764
Q ss_pred -CCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCcc
Q 001386 654 -SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV 732 (1088)
Q Consensus 654 -~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 732 (1088)
++...... ...+|+...
T Consensus 183 ~g~~~~~~~-----------------------------------------------~~~~~~~~~--------------- 200 (361)
T 2oiz_A 183 DGKVASQSR-----------------------------------------------SKQMFSVKD--------------- 200 (361)
T ss_dssp TSSEEEEEE-----------------------------------------------CCCCSCTTT---------------
T ss_pred CCcEeeecc-----------------------------------------------ccceEcCCC---------------
Confidence 22210000 001111100
Q ss_pred ccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCE
Q 001386 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 812 (1088)
Q Consensus 733 ~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 812 (1088)
.. ..+.+++++..++..+.++.+.++++....... ...|........ .. . -.......++++||++.
T Consensus 201 --~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~-----~~~~~~~~~~~~---~~-~-~~p~g~~~~a~~~dg~~ 267 (361)
T 2oiz_A 201 --DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV-----DGPWSLLNDEDK---AK-N-WVPGGYNLVGLHRASGR 267 (361)
T ss_dssp --SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE-----EEEEESCCHHHH---HT-T-CEECCSSCEEEETTTTE
T ss_pred --Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCcee-----cccccccCcccc---cc-c-cccCCeeEEEEecCCCe
Confidence 00 011224455555555566777777764332100 000111000000 00 0 00111223789999888
Q ss_pred EEEEe------------CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc--eeeeee
Q 001386 813 LFSAS------------GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS--EVISKL 878 (1088)
Q Consensus 813 l~~~~------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~--~~~~~l 878 (1088)
+.++. .+.|.+||+.+++.+.++..+. +.+++|+| |+++|++++. +.|.+||..++ +.+..+
T Consensus 268 lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 268 MYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp EEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred EEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEEe
Confidence 77653 2379999999999999998776 99999999 8889998887 99999999999 999998
Q ss_pred ccccCCeeEEEECCCCC
Q 001386 879 EGHSKRVTGLVFSDALN 895 (1088)
Q Consensus 879 ~~h~~~V~~l~~s~dg~ 895 (1088)
..+......++++|||+
T Consensus 344 ~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 344 EGAAEASLQVQFHPVGG 360 (361)
T ss_dssp TTSCSSEEEEEECCCSC
T ss_pred ccCCCCcEEEEecCCCC
Confidence 77777889999999986
No 170
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.72 E-value=1.9e-14 Score=167.09 Aligned_cols=329 Identities=11% Similarity=0.112 Sum_probs=223.6
Q ss_pred ceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcC--CCeeeEEEeCCCCCCCCceEEEe
Q 001386 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN--KVQLLTTIDAGGGLPENPRICFN 631 (1088)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~s 631 (1088)
++.|.++|..+++.+..+.... .+..+.|+|||+++++++.++.|.+||+. +++.+..+..... ...++|+
T Consensus 176 ~~~V~viD~~t~~v~~~i~~g~----~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~---P~~ia~s 248 (567)
T 1qks_A 176 AGQIALIDGSTYEIKTVLDTGY----AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE---ARSIETS 248 (567)
T ss_dssp TTEEEEEETTTCCEEEEEECSS----CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE---EEEEEEC
T ss_pred CCeEEEEECCCCeEEEEEeCCC----CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC---CceeEEc
Confidence 6679999999999998887533 56789999999999999999999999996 8888888875432 4689999
Q ss_pred ----cCCCEEEEEeC-CCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCccccccc
Q 001386 632 ----KNGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 706 (1088)
Q Consensus 632 ----~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 706 (1088)
|||+++++++. ++.+.++|..+.+.+..+......+....+.
T Consensus 249 ~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~--------------------------------- 295 (567)
T 1qks_A 249 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH--------------------------------- 295 (567)
T ss_dssp CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEE---------------------------------
T ss_pred cccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccccccc---------------------------------
Confidence 69998887765 5899999988776655433110000000000
Q ss_pred CccceeccccccCCCcceeeecCCccccccEEEEEEecCCceE-EEeccccceEEEEccCCCCCCCCCCCCcccCCCCCC
Q 001386 707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI-FALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGP 785 (1088)
Q Consensus 707 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1088)
....+..+..++++..+ +.....|.|.++|+.....
T Consensus 296 --------------------------p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~----------------- 332 (567)
T 1qks_A 296 --------------------------PEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN----------------- 332 (567)
T ss_dssp --------------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE-----------------
T ss_pred --------------------------CCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc-----------------
Confidence 11245667777776544 4445568888877543211
Q ss_pred cceeeccCCCCCCCCeeEEEEecCCCEEEEEe--CCcEEEEEcCCceeEEEecC-----CCCCeEEEEEcCCCCcEEEEE
Q 001386 786 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNVIAIG 858 (1088)
Q Consensus 786 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~sp~d~~~lasg 858 (1088)
+..... ........+.|+|+|++++++. +++|.++|+.+++.+..+.. |.+.-..+ ++|+++.+.+++
T Consensus 333 -~~v~~i---~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~ 407 (567)
T 1qks_A 333 -LKTTEI---SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATS 407 (567)
T ss_dssp -EEEEEE---ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEE
T ss_pred -ceeeee---eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeC
Confidence 111111 1234566789999999998876 68899999999998776653 22222222 678335555555
Q ss_pred e-CCCeEEEEEcCC-------ceeeeeeccccCCeeEEEECCCCCEEEEEeC-------CCcEEEEEcCCCce---ee-e
Q 001386 859 M-DDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGI---QT-C 919 (1088)
Q Consensus 859 ~-~dg~i~lwd~~~-------~~~~~~l~~h~~~V~~l~~s~dg~~las~s~-------Dg~i~iwd~~~~~~---~~-~ 919 (1088)
. .++.|.++|..+ .+.+.++......-..+..+||+++|.+... ..+|.++|+.+.+. .. .
T Consensus 408 ~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~ 487 (567)
T 1qks_A 408 HMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEF 487 (567)
T ss_dssp BSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCE
T ss_pred CCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCc
Confidence 4 468999999988 6778888765444355788999999987663 35899999987511 11 1
Q ss_pred eeeecCC--CCccCCCCeEEEEEcCCCCEEEEE-e-----CCeEEEEEcCcceeeeeee
Q 001386 920 RSLQTPD--GVMTLAPSETHIQFHKDQTRFLLV-H-----ETHLAIYEAEELTCLKQWF 970 (1088)
Q Consensus 920 ~~~~~~~--~~~~~~~~v~~~~fs~dg~~l~~~-~-----d~~i~vwd~~~~~~~~~~~ 970 (1088)
..+...+ +.......+.++.|++||+++.++ . ++.|.|+|..+++.+..+.
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 488 KTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp EEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred EEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 2222100 000011358999999999998875 2 5889999999999887754
No 171
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.72 E-value=3.1e-14 Score=165.17 Aligned_cols=325 Identities=13% Similarity=0.145 Sum_probs=221.7
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCC--CCCcccccccccC
Q 001386 588 TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP--ESNSVDAAGVLSD 665 (1088)
Q Consensus 588 ~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~ 665 (1088)
+.+..+++...++.|.++|..+++.+..+.... .+..++|+|||+++++++.++.|.+||+. +.+.+..+.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~---~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~---- 237 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK---- 237 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS---CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE----
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC---CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe----
Confidence 344556667789999999999999999887543 25689999999999999999999999985 443322111
Q ss_pred cceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEe--
Q 001386 666 NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN-- 743 (1088)
Q Consensus 666 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-- 743 (1088)
.......++|+
T Consensus 238 -------------------------------------------------------------------~G~~P~~ia~s~~ 250 (567)
T 1qks_A 238 -------------------------------------------------------------------IGSEARSIETSKM 250 (567)
T ss_dssp -------------------------------------------------------------------CCSEEEEEEECCS
T ss_pred -------------------------------------------------------------------cCCCCceeEEccc
Confidence 11234678999
Q ss_pred --cCCceEEEecc-ccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCC------CC-CCCeeEEEEecCCCEE
Q 001386 744 --NGGQAIFALAS-NGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDS------NS-QEAVPCFALSKNDAYL 813 (1088)
Q Consensus 744 --~~g~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~v~~~~~s~dg~~l 813 (1088)
|||++++++.. ++.+.++|..+.+. +........ .| ...+..+..++++..+
T Consensus 251 ~~pDGk~l~v~n~~~~~v~ViD~~t~~~------------------~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~ 312 (567)
T 1qks_A 251 EGWEDKYAIAGAYWPPQYVIMDGETLEP------------------KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF 312 (567)
T ss_dssp TTCTTTEEEEEEEETTEEEEEETTTCCE------------------EEEEECCEECTTTCCEESCCCEEEEEECSSSSEE
T ss_pred cCCCCCEEEEEEccCCeEEEEECCCCcE------------------EEEEeccccccccccccCCCceEEEEEcCCCCEE
Confidence 69998877765 58888887543322 211111100 01 2367889999988776
Q ss_pred EEEe--CCcEEEEEcCCceeE--EEecCCCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEEcCCceeeeeecc-----ccC
Q 001386 814 FSAS--GGVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSEVISKLEG-----HSK 883 (1088)
Q Consensus 814 ~~~~--dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~i~lwd~~~~~~~~~l~~-----h~~ 883 (1088)
+... .|.|.++|..+.+.. ..+ ........+.|+| ++++++++. .++.|.++|+.+++++..+.- |.+
T Consensus 313 vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg 390 (567)
T 1qks_A 313 IVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPG 390 (567)
T ss_dssp EEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCT
T ss_pred EEEecCCCeEEEEecCCCccceeeee-eccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCc
Confidence 6664 689999998875432 222 2345677899999 787776655 678999999999988766643 433
Q ss_pred CeeEEEECCCCCEE-EEEe-CCCcEEEEEcCCCc-----eeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEe-----
Q 001386 884 RVTGLVFSDALNIL-VSSG-GDAQIFVWDVDGWG-----IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----- 951 (1088)
Q Consensus 884 ~V~~l~~s~dg~~l-as~s-~Dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~----- 951 (1088)
.-.. .++|++..+ ++.. .+++|.++|..+.+ ......+....+ .-..+.++||++++.+..
T Consensus 391 ~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~------g~~~i~~~p~~~~l~v~~~~~~~ 463 (567)
T 1qks_A 391 RGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG------GSLFIKTHPNSQYLYVDATLNPE 463 (567)
T ss_dssp TCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS------CCCCEECCTTCSEEEEECTTCSS
T ss_pred ccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC------CCEEEEeCCCCCeEEEecCCCCC
Confidence 2222 257875544 4443 46899999998732 111222332211 123578999999999854
Q ss_pred ---CCeEEEEEcCcc-----eee-eeee-------cCCCcCEEEEEEeeCCCEEEEEe-----CCCcEEEEEcCCCceEE
Q 001386 952 ---ETHLAIYEAEEL-----TCL-KQWF-------PISSVPISQATFSCDCRMVFTSF-----VDGTLSIHEASNLEVQC 1010 (1088)
Q Consensus 952 ---d~~i~vwd~~~~-----~~~-~~~~-------~~h~~~v~~l~fs~dg~~l~s~s-----~dg~v~vwd~~~~~~~~ 1010 (1088)
.+.|.|+|+.+. ... ..+. ..-...+..+.|++||+++.++. .++.|.|+|..++++..
T Consensus 464 ~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~ 543 (567)
T 1qks_A 464 AEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKH 543 (567)
T ss_dssp HHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred cccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEE
Confidence 358999999977 211 2211 11246789999999999987663 37999999999999998
Q ss_pred Eec
Q 001386 1011 RIL 1013 (1088)
Q Consensus 1011 ~~~ 1013 (1088)
.+.
T Consensus 544 ~i~ 546 (567)
T 1qks_A 544 VIK 546 (567)
T ss_dssp EEC
T ss_pred EeC
Confidence 886
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.72 E-value=6.2e-16 Score=188.11 Aligned_cols=294 Identities=10% Similarity=0.001 Sum_probs=195.0
Q ss_pred eecccCCCCceeeeecCCCCeEEEEE--cccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeE-----
Q 001386 328 QTLIEGSSSPMSMDFHPVQHTLLLVG--TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN----- 400 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~lla~g--~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~----- 400 (1088)
..+.+|...|..++||+++- +++++ +.++...||....+..... +..|...+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------l~~~~~~~~~~~~~ 76 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEES-------------------ALPAPWNVRNRVFE 76 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEE-------------------SSCTTCCBCCCGGG
T ss_pred HHHhhcCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcce-------------------eCCCCccccccccc
Confidence 45678999999999999865 56666 5578899999654443322 444555555
Q ss_pred ----EEEEC--CCCCE-EEEEeC-CCEEEEEEcc--C-CCcccceeEecc-----CCCCEEEEEecCCCCcEEEEEEeCC
Q 001386 401 ----RVVWS--PDGSL-LGVAYS-KHIVQLYAYH--G-GSDARQQLEIDA-----HVGNVNDLAFSAPCKQISVITCGDD 464 (1088)
Q Consensus 401 ----~l~~s--~dg~~-las~~~-dg~i~vwd~~--~-~~~~~~~~~~~~-----h~~~v~~~~~s~d~~~l~l~s~s~d 464 (1088)
..+|+ |||++ ||.++. +..|.+|++. + ++ .+ .+.. |...+..++|+|||+ .|++++.|
T Consensus 77 ~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~ 150 (662)
T 3azo_A 77 YSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEE 150 (662)
T ss_dssp TCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEE
T ss_pred cCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEec
Confidence 55565 99999 887654 4556666665 3 43 22 3444 677899999999999 67776666
Q ss_pred ----------CcEEEEeCCC------CceeEEec-cCCccEEEEeeeeeCCceEEEEEecCC--------eEEEEECC-C
Q 001386 465 ----------KTIKVWDAVT------GSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDG--------KIKAWLYD-S 518 (1088)
Q Consensus 465 ----------~~i~vwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg--------~i~iwd~~-~ 518 (1088)
..|++||+.+ ++ ...+. .+...+..++| ++||++|+.++.++ .|.+||++ +
T Consensus 151 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~--SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~ 227 (662)
T 3azo_A 151 FTGEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRL--SPDGRQAVWLAWDHPRMPWEGTELKTARVTED 227 (662)
T ss_dssp ECSSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEE--CTTSSEEEEEEECTTCCTTTCEEEEEEEECTT
T ss_pred ccCCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceE--CCCCCEEEEEECCCCCCCCCCcEEEEEEECCC
Confidence 5899999988 44 44555 56666777777 56888998887653 79999998 4
Q ss_pred C---CceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccc-----cEEEEEEeCCC
Q 001386 519 L---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN-----SVSVVHFDTAK 590 (1088)
Q Consensus 519 ~---~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~ 590 (1088)
+ ........+...+..++|+|||++++++.. ++...|++||..+++.......+..... .+..++|+|++
T Consensus 228 g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~ 305 (662)
T 3azo_A 228 GRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANG 305 (662)
T ss_dssp SCEEEEEEEEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTS
T ss_pred CcccccEEeCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCC
Confidence 5 333333444678899999999995555432 3345788999877776544443321000 14678899999
Q ss_pred CEEEEEeCCCcEEEE--EcCCCeeeEEEeCCCCCCCCceEEEecCCCE--EEEEeCCC--cEEEEeCCCCCcc
Q 001386 591 DQILAAGDDHVIKIW--DMNKVQLLTTIDAGGGLPENPRICFNKNGTL--LAVIANEN--RIKILETPESNSV 657 (1088)
Q Consensus 591 ~~l~~~s~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~--l~~~~~dg--~i~iwd~~~~~~~ 657 (1088)
..+++++. +.+++| |..+++ +..+..+.. .+..+ +++++.. +++++.+. .|.+++..+++..
T Consensus 306 ~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~--~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~ 373 (662)
T 3azo_A 306 LIAVVHGK-GAAVLGILDPESGE-LVDAAGPWT--EWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRAR 373 (662)
T ss_dssp CEEEEEBS-SSCEEEEEETTTTE-EEECCSSCC--EEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred EEEEEEEc-CccEEEEEECCCCc-EEEecCCCC--eEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence 99999988 999999 655555 555554422 34444 1455543 33444444 4555666666543
No 173
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.70 E-value=4.9e-15 Score=162.24 Aligned_cols=249 Identities=12% Similarity=0.085 Sum_probs=183.5
Q ss_pred CCCeeEEEEecCCCEEEEEeCC-------------------------cEEEEEcCCceeEEEec-CCCCCeEEEEEcCCC
Q 001386 798 QEAVPCFALSKNDAYLFSASGG-------------------------VISLYIVMTFKTILTIM-PPSPTATSLAFNPHD 851 (1088)
Q Consensus 798 ~~~v~~~~~s~dg~~l~~~~dg-------------------------~i~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~d 851 (1088)
-..+.+++++|+|+++++...+ .|.+||..+++.+..+. .+......++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 4578999999999999887733 69999999998877665 3446789999999 7
Q ss_pred CcEEEEEeCCCeEEEEEcCCce-eeeee---------ccccCCeeEEEECC-CCCEEEEEe-CCCcEEEEEcCCCceeee
Q 001386 852 NNVIAIGMDDSTILIYNARSSE-VISKL---------EGHSKRVTGLVFSD-ALNILVSSG-GDAQIFVWDVDGWGIQTC 919 (1088)
Q Consensus 852 ~~~lasg~~dg~i~lwd~~~~~-~~~~l---------~~h~~~V~~l~~s~-dg~~las~s-~Dg~i~iwd~~~~~~~~~ 919 (1088)
++++++...++.|++||..... .+..+ .++......|+++| +|.++++.+ .++.|++|+.+. ....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~- 179 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVT- 179 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEE-
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEE-
Confidence 8888888889999999976442 44555 34555789999999 888888886 689999999543 3221
Q ss_pred eeeecC-CCC---ccCCCCeEEEEEcCC-CCEEEEE-eCCeEEEEEcCcceeeeeee-cCCCcCEEEEEEee------CC
Q 001386 920 RSLQTP-DGV---MTLAPSETHIQFHKD-QTRFLLV-HETHLAIYEAEELTCLKQWF-PISSVPISQATFSC------DC 986 (1088)
Q Consensus 920 ~~~~~~-~~~---~~~~~~v~~~~fs~d-g~~l~~~-~d~~i~vwd~~~~~~~~~~~-~~h~~~v~~l~fs~------dg 986 (1088)
.+... .+. .........++|+|+ +.++++. .++.|++||..+|+.+..+. ..+...+..++|+| +|
T Consensus 180 -~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g 258 (329)
T 3fvz_A 180 -QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNG 258 (329)
T ss_dssp -EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEEC
T ss_pred -EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCC
Confidence 11110 000 000124789999999 5655553 56789999999898887754 34567889999999 34
Q ss_pred CEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001386 987 RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1058 (1088)
Q Consensus 987 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~ 1058 (1088)
...++...+..|++|++.+|+.+..+.... ..-..|..++++| ||.++++...++.|.+|++..
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~-------~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPVR-------KHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTCCEEEEECCSS-------SCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEE
T ss_pred CEEeccCCCcEEEEEEcCCCeEEEEEcCCC-------CccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCc
Confidence 333333445689999999999888764211 1123567899999 788999999999999999854
No 174
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.70 E-value=2.8e-15 Score=166.23 Aligned_cols=262 Identities=9% Similarity=0.109 Sum_probs=177.3
Q ss_pred CceeeeecCCCCeEEEEE--------cccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 336 SPMSMDFHPVQHTLLLVG--------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g--------~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
.+..+++ ||++++.+. ..++.|.+||+.+++... + ..+..++||||
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~SpD 69 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISPD 69 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECTT
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECCC
Confidence 5677788 898655442 125789999998876432 2 46888999999
Q ss_pred CCEEEEEeCC---C--EEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeC-------------------
Q 001386 408 GSLLGVAYSK---H--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------------------- 463 (1088)
Q Consensus 408 g~~las~~~d---g--~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~------------------- 463 (1088)
|++||.++.+ + .|.+||+.+++... +..+.. +..++|+|||+ .|+.++.
T Consensus 70 g~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~ 142 (347)
T 2gop_A 70 GKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSR--KLLIVGFKRREDEDFIFEDDVPAWFD 142 (347)
T ss_dssp SSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSS--EEEEEEECCCC---------CCCC--
T ss_pred CCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCC--EEEEEEccCCCcCCcEEEcccceeec
Confidence 9999988754 3 47888888875432 323334 99999999999 4555442
Q ss_pred --------CCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCC-------eEEEEECCCCCceEEecCC
Q 001386 464 --------DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG-------KIKAWLYDSLGARVDYDAP 528 (1088)
Q Consensus 464 --------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~ 528 (1088)
...|.+||+.+++.+..+.. . .+..+.| +++| +++++..++ ...+|.+++ .....+..+
T Consensus 143 g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~--spdg-~~~~~~~~~~~~~~~~~~~l~~~d~-~~~~~l~~~ 216 (347)
T 2gop_A 143 DLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIW--HRDK-IVVNVPHREIIPQYFKFWDIYIWED-GKEEKMFEK 216 (347)
T ss_dssp -------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEE--ETTE-EEEEEECCCSSCCSSCCEEEEEEET-TEEEEEEEE
T ss_pred CcccccCccceEEEEECCCCeEEeeecC-C-CcccccC--CCCe-EEEEEecccccccccccccEEEeCC-CceEEeccC
Confidence 25799999999887555554 3 6677777 4577 777776542 445555543 333333333
Q ss_pred CCceEEEEEccCCCEEEEEeeCCC----CceeEEEEeCCCCceeEEEeccccccccEEE-EEEeCCCCEEEEEeCCCcEE
Q 001386 529 GLGCTRMAYSANGRRLFSCGTSKE----GESFLVEWNESEGAIKRTYQGLQLQHNSVSV-VHFDTAKDQILAAGDDHVIK 603 (1088)
Q Consensus 529 ~~~v~~~~~s~~g~~l~~~~~~~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~s~dg~i~ 603 (1088)
..+..+ +|||++|+.++.... ....|++|| +++.......+. ..+.. +.|+ ++ .+++++.++.++
T Consensus 217 -~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~---~~~~~~~~~s-dg-~~~~~~~~~~~~ 286 (347)
T 2gop_A 217 -VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVD---RGVGQAKIKD-GK-VYFTLFEEGSVN 286 (347)
T ss_dssp -ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCC---SEEEEEEEET-TE-EEEEEEETTEEE
T ss_pred -cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCC---cccCCccEEc-Cc-EEEEEecCCcEE
Confidence 444443 999999988775331 245789999 565544444444 56775 8899 88 888899999999
Q ss_pred EEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcE-EEEeCC
Q 001386 604 IWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI-KILETP 652 (1088)
Q Consensus 604 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i-~iwd~~ 652 (1088)
+| +.+++....+.. ...+.+++|+| .++++++.++.. .+|.+.
T Consensus 287 l~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 287 LY-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EE-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EE-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 99 876665444432 23578899999 677777776654 777665
No 175
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.70 E-value=1.7e-14 Score=154.83 Aligned_cols=242 Identities=10% Similarity=0.096 Sum_probs=176.9
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecC------CCCCeEEEEEc-CCCCcEEEEEeC-CCeEEEE
Q 001386 797 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMP------PSPTATSLAFN-PHDNNVIAIGMD-DSTILIY 867 (1088)
Q Consensus 797 ~~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s-p~d~~~lasg~~-dg~i~lw 867 (1088)
+-..+.+++++++|.++++.. ++.|.+||.. ++.+..+.. +...+..++++ + +++++++... ++.|++|
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~-~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN-SGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT-TTEEEEEECGGGCEEEEE
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcC-CCeEEEEcCCCCCEEEEE
Confidence 456788999999999888765 7899999987 666666542 33578899995 5 7777776643 8899999
Q ss_pred EcCCceeeeeecc-ccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCE
Q 001386 868 NARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 946 (1088)
Q Consensus 868 d~~~~~~~~~l~~-h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~ 946 (1088)
| .+++.+..+.. +...+.+++++++|+++++...++.|.+||..... . ..+... +.. ..+..++++++|++
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~--~~~~~~-~~~---~~p~~i~~~~~g~l 177 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV-L--HKFGCS-KHL---EFPNGVVVNDKQEI 177 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-E--EEEECT-TTC---SSEEEEEECSSSEE
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCE-E--EEeCCC-Ccc---CCcEEEEECCCCCE
Confidence 9 66777766643 45678999999999988888888999999976422 1 111111 111 24789999999997
Q ss_pred EEEE-eCCeEEEEEcCcceeeeeee-cCCCcCEEEEEEeeCCCEEEEEeCCC-cEEEEEcCCCceEEEeccccccCCCCc
Q 001386 947 FLLV-HETHLAIYEAEELTCLKQWF-PISSVPISQATFSCDCRMVFTSFVDG-TLSIHEASNLEVQCRILSTAYLRPTTS 1023 (1088)
Q Consensus 947 l~~~-~d~~i~vwd~~~~~~~~~~~-~~h~~~v~~l~fs~dg~~l~s~s~dg-~v~vwd~~~~~~~~~~~~~~~~~~~~~ 1023 (1088)
+++. .++.|++||.. ++.+..+. .++...+..++++++|.++++...++ .|.+|+. +++.+..+....
T Consensus 178 ~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~------- 248 (286)
T 1q7f_A 178 FISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV------- 248 (286)
T ss_dssp EEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS-------
T ss_pred EEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccC-------
Confidence 7774 57899999974 55555433 22346789999999999888887776 9999995 566666554211
Q ss_pred cccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 1024 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 1024 ~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~ 1060 (1088)
....+.+++++| +|+++++ +.|++|.+|++....
T Consensus 249 -~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 249 -KHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp -CCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCCC
T ss_pred -CCCcceeEEECC-CCcEEEE-CCCCeEEEEEccccc
Confidence 112466799999 7776666 679999999986543
No 176
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.70 E-value=5e-16 Score=175.88 Aligned_cols=244 Identities=9% Similarity=-0.017 Sum_probs=164.0
Q ss_pred CeEEEEECCCCCEEEEEeCC---CEEEEEEccCCCcccceeEeccCCCCE-EEEEecCCCCcEEEEEEeCCCcEEEEeCC
Q 001386 398 SVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNV-NDLAFSAPCKQISVITCGDDKTIKVWDAV 473 (1088)
Q Consensus 398 ~V~~l~~s~dg~~las~~~d---g~i~vwd~~~~~~~~~~~~~~~h~~~v-~~~~~s~d~~~l~l~s~s~d~~i~vwd~~ 473 (1088)
.+.+++|||||++||.+... ..|.+||+.+++... +..+...+ ..+.|+|||+ .|+.++.++.|++||+.
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~----l~~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~ 110 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ----LTEGKGDNTFGGFISTDER--AFFYVKNELNLMKVDLE 110 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE----CCCSSCBCTTTCEECTTSS--EEEEEETTTEEEEEETT
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE----eecCCCCccccceECCCCC--EEEEEEcCCcEEEEECC
Confidence 37788999999999887653 478899998876432 33333333 3378999999 78888888899999999
Q ss_pred CCceeEEeccCCccEEE---Eee--------------eeeCCceEEEEE-----ecCCeEEEEECCCCCceEEecCCCCc
Q 001386 474 TGSRTYSFEGHGAPVYS---LCP--------------HAKENIHFIFSI-----SVDGKIKAWLYDSLGARVDYDAPGLG 531 (1088)
Q Consensus 474 ~~~~~~~~~~~~~~v~~---~~~--------------~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~ 531 (1088)
+++.......+...... +++ ..+++++.++.. ..+..|.+||+.+++..... .+...
T Consensus 111 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~ 189 (396)
T 3c5m_A 111 TLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAW 189 (396)
T ss_dssp TCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSC
T ss_pred CCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcc
Confidence 98876655545443222 111 113344444332 35668999999887655444 34557
Q ss_pred eEEEEEcc-CCCEEEEEeeCCCC--ceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC-----CcEE
Q 001386 532 CTRMAYSA-NGRRLFSCGTSKEG--ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIK 603 (1088)
Q Consensus 532 v~~~~~s~-~g~~l~~~~~~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~ 603 (1088)
+..+.|+| +++.|+.++..... ...|++||..+++......... ...+..+.|+|+|++|+.++.+ +.|+
T Consensus 190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 267 (396)
T 3c5m_A 190 LGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAE--GESCTHEFWIPDGSAMAYVSYFKGQTDRVIY 267 (396)
T ss_dssp EEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCT--TEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred cccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCC--CccccceEECCCCCEEEEEecCCCCccceEE
Confidence 88999999 89888877642110 1569999987665433322111 2357889999999988876543 4499
Q ss_pred EEEcCCCeeeEEEeCCCCCCCCceEEEec-CCCEEEEEe----------------CCCcEEEEeCCCCC
Q 001386 604 IWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIA----------------NENRIKILETPESN 655 (1088)
Q Consensus 604 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~----------------~dg~i~iwd~~~~~ 655 (1088)
+||+.+++......... .. +.|+| ||+++++++ .++.|++||..+++
T Consensus 268 ~~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 268 KANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp EECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred EEECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence 99999887654433221 22 89999 999888765 24678888877653
No 177
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.68 E-value=4.9e-14 Score=154.28 Aligned_cols=247 Identities=11% Similarity=0.089 Sum_probs=184.5
Q ss_pred CCceeeeecCCCCeEEEEEccc------------------------CcEEEEecCCCcceeeeceeeeeeccccccceee
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNV------------------------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA 390 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~d------------------------g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~ 390 (1088)
+.|.+|+++|+|+ ++++...+ ++|.+||..+|+.+...
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~----------------- 85 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS----------------- 85 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE-----------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc-----------------
Confidence 4799999999998 67777766 47999999888765421
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCC-cccceeEe---------ccCCCCEEEEEecC-CCCcEEEE
Q 001386 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEI---------DAHVGNVNDLAFSA-PCKQISVI 459 (1088)
Q Consensus 391 ~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~-~~~~~~~~---------~~h~~~v~~~~~s~-d~~~l~l~ 459 (1088)
..++-..+..++++|+|+++++...++.|++||..... .+. .+ .++......++|+| ++. +++
T Consensus 86 -~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv 159 (329)
T 3fvz_A 86 -GKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV 159 (329)
T ss_dssp -CTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred -CCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence 12455678999999999988888889999999986542 222 23 24455789999999 677 677
Q ss_pred EEe-CCCcEEEEeCCCCceeEEeccCC----------ccEEEEeeeeeCC-ceEEEEEecCCeEEEEECCCCCceEEec-
Q 001386 460 TCG-DDKTIKVWDAVTGSRTYSFEGHG----------APVYSLCPHAKEN-IHFIFSISVDGKIKAWLYDSLGARVDYD- 526 (1088)
Q Consensus 460 s~s-~d~~i~vwd~~~~~~~~~~~~~~----------~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~- 526 (1088)
+.+ .++.|++|| .+|+.+..+.... .....+++. ++ +.++++...++.|++||.++++....+.
T Consensus 160 ~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d--~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~ 236 (329)
T 3fvz_A 160 SDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALV--PHLDQLCVADRENGRIQCFKTDTKEFVREIKH 236 (329)
T ss_dssp EECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEE--TTTTEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred EeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEE--CCCCEEEEEECCCCEEEEEECCCCcEEEEEec
Confidence 775 689999999 7788877774322 237788885 45 6788888899999999998777766653
Q ss_pred -CCCCceEEEEEccCCCEEEEEeeC---CCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcE
Q 001386 527 -APGLGCTRMAYSANGRRLFSCGTS---KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI 602 (1088)
Q Consensus 527 -~~~~~v~~~~~s~~g~~l~~~~~~---~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i 602 (1088)
.....+..++|+| +..++..+.. ......|++||..+++.+..+.....+...+..++++|+|..+++...++.|
T Consensus 237 ~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I 315 (329)
T 3fvz_A 237 ASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTV 315 (329)
T ss_dssp TTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCE
T ss_pred cccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEE
Confidence 3455788999999 4444433211 1224579999999999998875322233678999999999777888889999
Q ss_pred EEEEcCC
Q 001386 603 KIWDMNK 609 (1088)
Q Consensus 603 ~iwd~~~ 609 (1088)
++|++..
T Consensus 316 ~~~~~~~ 322 (329)
T 3fvz_A 316 WKFTLTE 322 (329)
T ss_dssp EEEEEEE
T ss_pred EEEeCCc
Confidence 9999753
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.67 E-value=1.1e-14 Score=177.04 Aligned_cols=250 Identities=11% Similarity=-0.000 Sum_probs=173.5
Q ss_pred ecCCCCCeEEEEECCCCCEEEEE--eCCCEEEEEEccCCCcccceeEeccCCCCEE---------EEEec--CCCCcEEE
Q 001386 392 VRDPGVSVNRVVWSPDGSLLGVA--YSKHIVQLYAYHGGSDARQQLEIDAHVGNVN---------DLAFS--APCKQISV 458 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~~las~--~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~---------~~~~s--~d~~~l~l 458 (1088)
+.+|...|..++|++++.++++. +.++...||....+...+ .+..|...+. ...|+ |||+.+ |
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~-l 94 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL-L 94 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE-E
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCCeE-E
Confidence 66789999999999887777777 558899999975443333 5666766665 56665 999941 4
Q ss_pred EEEe-CCCcEEEEeCC--CCceeEEecc-----CCccEEEEeeeeeCCceEEEEEecC----------CeEEEEECCCC-
Q 001386 459 ITCG-DDKTIKVWDAV--TGSRTYSFEG-----HGAPVYSLCPHAKENIHFIFSISVD----------GKIKAWLYDSL- 519 (1088)
Q Consensus 459 ~s~s-~d~~i~vwd~~--~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~s~~~d----------g~i~iwd~~~~- 519 (1088)
+.++ .+..|.+|++. ++.....+.. |...+..++| ++||+.|++++.+ ..|++||+.+.
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~--spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 172 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVL--LPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSA 172 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEE--ETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTT
T ss_pred EEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEE--CCCCCEEEEEEecccCCCCCCceeEEEEEECCCCc
Confidence 4433 35667777765 2044556655 5677888888 5578899988877 58999999872
Q ss_pred ----CceEEec-CCCCceEEEEEccCCCEEEEEeeCCC----CceeEEEEeCC-CC---ceeEEEeccccccccEEEEEE
Q 001386 520 ----GARVDYD-APGLGCTRMAYSANGRRLFSCGTSKE----GESFLVEWNES-EG---AIKRTYQGLQLQHNSVSVVHF 586 (1088)
Q Consensus 520 ----~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~----~~~~i~iwd~~-~~---~~~~~~~~~~~~~~~v~~~~~ 586 (1088)
.....+. .+...+..++|||||++|+.++.+.. ....|++||+. ++ +......++. ..+..+.|
T Consensus 173 ~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~---~~~~~~~~ 249 (662)
T 3azo_A 173 AADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE---EAIAQAEW 249 (662)
T ss_dssp TTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT---BCEEEEEE
T ss_pred cccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC---ceEcceEE
Confidence 2333444 44567788999999999998875442 23679999998 57 4444444444 67899999
Q ss_pred eCCCCEEEEEeCCC--cEEEEEcCCCeeeEEEeCCCCC------CCCceEEEecCCCEEEEEeCCCcEEEEeC
Q 001386 587 DTAKDQILAAGDDH--VIKIWDMNKVQLLTTIDAGGGL------PENPRICFNKNGTLLAVIANENRIKILET 651 (1088)
Q Consensus 587 ~~~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~------~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1088)
+|||+.+++++.++ .|.+||+.+++.......+... ..+..++|+|+++++++++. +.++||.+
T Consensus 250 spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 250 APDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp CTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred CCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 99999777777788 5666776666654433322111 11457888888888888887 88888743
No 179
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.67 E-value=3e-10 Score=140.41 Aligned_cols=584 Identities=9% Similarity=0.035 Sum_probs=338.8
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~ 415 (1088)
.|+++.-.++|... .|+.+| +..||-.+ ... +.... ... ..-....|.++...++|.+.+ |+
T Consensus 44 ~v~~I~qD~~G~lW--igT~~G-L~ryDG~~---f~~-----~~~~~----~~~--~~l~~n~I~~i~~d~~g~lWi-gT 105 (795)
T 4a2l_A 44 TVFSIDQDKRGNMW--FATYDG-VNKYDGYA---FTV-----YQHNE----DDP--NSIANDISRIVKTDSQGRVWI-GT 105 (795)
T ss_dssp CEEEEEECTTSCEE--EEETTE-EEEECSSC---EEE-----ECCCT----TCT--TSCSCSCEEEEEECTTSCEEE-EE
T ss_pred eeEEEEEcCCCCEE--EeecCc-CcccCCCc---eEE-----EeCCC----CCC--CcccccceeEEEECCCCCEEE-Ee
Confidence 79999999999744 444555 55666332 111 10000 000 000246799999999887654 55
Q ss_pred CCCEEEEEEccCCCcccceeEeccCCC----CEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccC-Ccc-EE
Q 001386 416 SKHIVQLYAYHGGSDARQQLEIDAHVG----NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH-GAP-VY 489 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~~~~h~~----~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~-~~~-v~ 489 (1088)
.+| +..||..+++.. .+..... .|.++...++|. +.+ ++. +.+..||..+++.......+ ... |.
T Consensus 106 ~~G-l~~yd~~~~~f~----~~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~i~ 176 (795)
T 4a2l_A 106 RDG-LSRYDEEKDIFQ----NFFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKFIDDSFSTAMHKTIA 176 (795)
T ss_dssp SSC-EEEEETTTTEEE----EECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEEECSSSCHHHHTCCE
T ss_pred CCc-hheeCCCCCeEE----eccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEEEeccCCCCCCcceE
Confidence 666 899998776421 2221111 288888888887 333 444 45899998776543211111 112 66
Q ss_pred EEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEe-cCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCcee
Q 001386 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1088)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1088)
++.. +.++. +..++.++.+..|+..+.+..... ......|.++...++|...+..... -+..||..+++..
T Consensus 177 ~i~~--d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~-----Gl~~~~~~~~~~~ 248 (795)
T 4a2l_A 177 STLY--RQGDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGA-----GLFLINPKTKEIK 248 (795)
T ss_dssp EEEE--EETTE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSS-----CEEEEETTTTEEE
T ss_pred EEEE--CCCCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCC-----CeEEEeCCCCeEE
Confidence 6665 33444 444666656888987766543321 1234568888888888766654211 2899998877654
Q ss_pred EEEecc----ccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCC-----CCCCCCceEEEecCCCEEEE
Q 001386 569 RTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GGLPENPRICFNKNGTLLAV 639 (1088)
Q Consensus 569 ~~~~~~----~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~s~~~~~l~~ 639 (1088)
...... ......|.++...++|...+ |+.+ .|.+||..+++........ -....|.++...++|.+ -+
T Consensus 249 ~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l-Wi 325 (795)
T 4a2l_A 249 NYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGM-WL 325 (795)
T ss_dssp EECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCE-EE
T ss_pred EeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCE-EE
Confidence 432221 11235699998888876544 4555 5899998877654332211 01235778888888864 45
Q ss_pred EeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccC
Q 001386 640 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 719 (1088)
Q Consensus 640 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~ 719 (1088)
|+.++-|..++..+.... .... . +.
T Consensus 326 gt~~~Gl~~~~~~~~~~~-~~~~----------~----------------------~~---------------------- 350 (795)
T 4a2l_A 326 GTYFGGLNYYHPIRNRFK-NIRN----------I----------------------PY---------------------- 350 (795)
T ss_dssp EESSSCEEEECGGGGSSE-EECC----------C----------------------TT----------------------
T ss_pred EECCCCeEEeCCCcccce-EEcC----------C----------------------CC----------------------
Confidence 666677777765432110 0000 0 00
Q ss_pred CCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCC
Q 001386 720 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQE 799 (1088)
Q Consensus 720 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1088)
+.......|.++...++|. +..++.++-+..|+...... +.+....+. ....-...
T Consensus 351 ---------~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~--------~~~~~~~~~------~~~~l~~~ 406 (795)
T 4a2l_A 351 ---------KNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRF--------TSYTLQEDE------SARGIGSN 406 (795)
T ss_dssp ---------SSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCE--------EEECCC------------CCSCS
T ss_pred ---------CCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcE--------EEEecCCCC------cccCCCCc
Confidence 0001234678888888887 44566665677766432211 000000000 00001346
Q ss_pred CeeEEEEecCCC-EEEEEeCCcEEEEEcCCceeEEEec----CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee
Q 001386 800 AVPCFALSKNDA-YLFSASGGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 874 (1088)
Q Consensus 800 ~v~~~~~s~dg~-~l~~~~dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~ 874 (1088)
.|.+++..++|. +.+...++.|.+||..+++...-.. .+...|.++...+ ++.+.+ |+.+ -+.+||..+++.
T Consensus 407 ~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~~-Gl~~~~~~~~~~ 483 (795)
T 4a2l_A 407 NIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWL-GTLS-ALVRFNPEQRSF 483 (795)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEE-EESS-CEEEEETTTTEE
T ss_pred cEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEE-EecC-ceeEEeCCCCeE
Confidence 789999999999 5554446779999998776443222 1345789999888 666554 4454 589999888765
Q ss_pred eeeecc------ccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecC-CCCccCCCCeEEEEEcCCCCEE
Q 001386 875 ISKLEG------HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP-DGVMTLAPSETHIQFHKDQTRF 947 (1088)
Q Consensus 875 ~~~l~~------h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~fs~dg~~l 947 (1088)
...... +...|.++...++|++.+... + -|..||..+++. . +... .........|.++...++|++.
T Consensus 484 ~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~-~---~~~~~~~~~l~~~~i~~i~~d~~g~lW 557 (795)
T 4a2l_A 484 TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI-Q---KASILPVSNVTKLFTNCIYEASNGIIW 557 (795)
T ss_dssp EECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE-E---ECCCSCSCGGGGSCEEEEEECTTSCEE
T ss_pred EEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE-E---EecCCCCCCCCCCeeEEEEECCCCCEE
Confidence 432211 236799999999998877554 4 488999887543 1 1100 0001111368999999999977
Q ss_pred EEEeCCeEEEEEcCcceeeeeeecC---CCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCcc
Q 001386 948 LLVHETHLAIYEAEELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC 1024 (1088)
Q Consensus 948 ~~~~d~~i~vwd~~~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 1024 (1088)
+.+.. .+..||..+++... +... ....|.++...++|.+.+++ ++.|..|+..++... .+....-++..
T Consensus 558 igT~~-Gl~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~~~~~~~-~~~~~dGl~~~--- 629 (795)
T 4a2l_A 558 VGTRE-GFYCFNEKDKQIKR-YNTTNGLPNNVVYGILEDSFGRLWLST--NRGISCFNPETEKFR-NFTESDGLQSN--- 629 (795)
T ss_dssp EEESS-CEEEEETTTTEEEE-ECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEEEETTTTEEE-EECGGGTCSCS---
T ss_pred EEeCC-CceeECCCCCcEEE-eCCCCCCchhheEEEEECCCCCEEEEc--CCceEEEcCCCCcEE-EcCCcCCCccc---
Confidence 76654 78899988775433 2211 14568889888889876654 456888998877643 33322222221
Q ss_pred ccccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001386 1025 LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1057 (1088)
Q Consensus 1025 ~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~ 1057 (1088)
.....++...+ +|. |..|+.+| +..++..
T Consensus 630 -~f~~~~~~~~~-~G~-l~~g~~~G-l~~~~p~ 658 (795)
T 4a2l_A 630 -QFNTASYCRTS-VGQ-MYFGGING-ITTFRPE 658 (795)
T ss_dssp -CEEEEEEEECT-TSC-EEEEETTE-EEEECGG
T ss_pred -cCccCceeECC-CCe-EEEecCCc-eEEEcHH
Confidence 22234566676 666 55566777 5556654
No 180
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.66 E-value=2e-10 Score=142.08 Aligned_cols=532 Identities=8% Similarity=0.039 Sum_probs=318.7
Q ss_pred CCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~ 414 (1088)
..|.++...++|.. .+ |+. +.+..||..+++.... .. . .......|.++...++|.+.+.
T Consensus 88 n~I~~i~~d~~g~l-Wi-gT~-~Gl~~yd~~~~~f~~~-~~------------~---~~~~~~~i~~i~~d~~g~lwi~- 147 (795)
T 4a2l_A 88 DISRIVKTDSQGRV-WI-GTR-DGLSRYDEEKDIFQNF-FY------------E---KNGKHLQVNGIEEISPEQLLIS- 147 (795)
T ss_dssp SCEEEEEECTTSCE-EE-EES-SCEEEEETTTTEEEEE-CC------------E---ETTEECCCCEEEEEETTEEEEE-
T ss_pred cceeEEEECCCCCE-EE-EeC-CchheeCCCCCeEEec-cc------------c---ccCCCceEEEEEECCCCCEEEE-
Confidence 37999999999984 33 334 4589999877653221 00 0 0000012888888888876654
Q ss_pred eCCCEEEEEEccCCCcccceeEeccC-CCC-EEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe-ccCCccEEEE
Q 001386 415 YSKHIVQLYAYHGGSDARQQLEIDAH-VGN-VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSL 491 (1088)
Q Consensus 415 ~~dg~i~vwd~~~~~~~~~~~~~~~h-~~~-v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~ 491 (1088)
+.+ .|..||..+++..... .++ ... |.++...+++. +..++.++.+..||..+++..... ......|.++
T Consensus 148 t~~-gl~~~~~~~~~~~~~~---~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i 220 (795)
T 4a2l_A 148 TPE-GLIMFDIKESKFIDDS---FSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAI 220 (795)
T ss_dssp ETT-EEEEEETTTTEEECSS---SCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEEE
T ss_pred ECC-ceEEEECCCCEEEecc---CCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEE
Confidence 444 4899998775422110 011 123 88888888886 444665556999998877654321 1234567777
Q ss_pred eeeeeCCceEEEEEecCCeEEEEECCCCCceEEecC-------CCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC
Q 001386 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-------PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1088)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 564 (1088)
.. +.++. +..++.++-+..||..+......... ....|.++...++|...+... . -|.+||..+
T Consensus 221 ~~--d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-~-----Gl~~~~~~~ 291 (795)
T 4a2l_A 221 LQ--QSPTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-N-----DLNIYHEGT 291 (795)
T ss_dssp EE--EETTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-S-----CEEEEETTT
T ss_pred EE--cCCCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-C-----hhheEcCCC
Confidence 65 33444 44555554588898776544332211 234689999999888666542 1 289999887
Q ss_pred CceeEEEecc----ccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCC-----CCCCCceEEEecCCC
Q 001386 565 GAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFNKNGT 635 (1088)
Q Consensus 565 ~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~ 635 (1088)
+......... ......|.++...++|. +..|+.++.|..|+..++... .+.... ....|.++...++|.
T Consensus 292 ~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~ 369 (795)
T 4a2l_A 292 DSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKN 369 (795)
T ss_dssp TEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTSC
T ss_pred CeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCCC
Confidence 7654432211 11235799999888876 556777778999987655432 222110 123477888888776
Q ss_pred EEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccc
Q 001386 636 LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 715 (1088)
Q Consensus 636 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~ 715 (1088)
+. +|+.++-|..|+..++......... ..
T Consensus 370 lW-iGt~~~Gl~~~~~~~~~~~~~~~~~---------------------------------~~----------------- 398 (795)
T 4a2l_A 370 LW-IGTNDGGLNLYNPITQRFTSYTLQE---------------------------------DE----------------- 398 (795)
T ss_dssp EE-EEESSSCEEEECTTTCCEEEECCC-----------------------------------------------------
T ss_pred EE-EEECCCCeEEEcCCCCcEEEEecCC---------------------------------CC-----------------
Confidence 44 5777777888887654221100000 00
Q ss_pred cccCCCcceeeecCC-ccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCC
Q 001386 716 LFARPSECQSLLLPS-KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTD 794 (1088)
Q Consensus 716 ~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1088)
+. ......|.+++..++|..|..++.++-+..|+...+.. +.+.... .
T Consensus 399 -------------~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~--------~~~~~~~----------~ 447 (795)
T 4a2l_A 399 -------------SARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV--------ENFNQRN----------S 447 (795)
T ss_dssp ----------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE--------EEECTTT----------S
T ss_pred -------------cccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE--------EEeecCC----------C
Confidence 00 00234678888888888455566655677777543321 0010000 0
Q ss_pred CCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecC------CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 001386 795 SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDSTILIYN 868 (1088)
Q Consensus 795 ~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd 868 (1088)
......|.++...++|.+.+... +.+.+||..+++....... ....|.++...+ ++.+.+ |+. +-+..||
T Consensus 448 ~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~-~Gl~~~~ 523 (795)
T 4a2l_A 448 QLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLWI-GGE-EGLSVFK 523 (795)
T ss_dssp CCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT-TCCEEE-EES-SCEEEEE
T ss_pred CcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECC-CCCEEE-EeC-CceEEEe
Confidence 01356789999999998777665 5689999887654432211 235789999988 666555 444 4588999
Q ss_pred cCCceeeeeec-------cccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEc
Q 001386 869 ARSSEVISKLE-------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH 941 (1088)
Q Consensus 869 ~~~~~~~~~l~-------~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs 941 (1088)
..+++. .+. .+...|.++...++|.+.+... .| |..||..+++.. .+....+... ..|.++...
T Consensus 524 ~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G-l~~~d~~~~~~~---~~~~~~gl~~--~~i~~i~~d 594 (795)
T 4a2l_A 524 QEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG-FYCFNEKDKQIK---RYNTTNGLPN--NVVYGILED 594 (795)
T ss_dssp EETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-EEEEETTTTEEE---EECGGGTCSC--SCEEEEEEC
T ss_pred CCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-ceeECCCCCcEE---EeCCCCCCch--hheEEEEEC
Confidence 887765 222 2345799999999998776544 34 888998775422 2222222221 358899999
Q ss_pred CCCCEEEEEeCCeEEEEEcCcceeeeeeecCC---CcCE--EEEEEeeCCCEEEEEeCCCcEEEEEc
Q 001386 942 KDQTRFLLVHETHLAIYEAEELTCLKQWFPIS---SVPI--SQATFSCDCRMVFTSFVDGTLSIHEA 1003 (1088)
Q Consensus 942 ~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h---~~~v--~~l~fs~dg~~l~s~s~dg~v~vwd~ 1003 (1088)
++|++.+++ ++.|..|+..+++.. .+.... ...+ .++...+||.+++ |+.+| +..++.
T Consensus 595 ~~g~lWi~t-~~Gl~~~~~~~~~~~-~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G-l~~~~p 657 (795)
T 4a2l_A 595 SFGRLWLST-NRGISCFNPETEKFR-NFTESDGLQSNQFNTASYCRTSVGQMYF-GGING-ITTFRP 657 (795)
T ss_dssp TTSCEEEEE-TTEEEEEETTTTEEE-EECGGGTCSCSCEEEEEEEECTTSCEEE-EETTE-EEEECG
T ss_pred CCCCEEEEc-CCceEEEcCCCCcEE-EcCCcCCCccccCccCceeECCCCeEEE-ecCCc-eEEEcH
Confidence 999887776 566888998876643 222111 2222 4667778887655 66677 444553
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.65 E-value=1.2e-13 Score=148.12 Aligned_cols=248 Identities=14% Similarity=0.164 Sum_probs=177.6
Q ss_pred ccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEE-CCCCC
Q 001386 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-SPDGS 409 (1088)
Q Consensus 331 ~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~-s~dg~ 409 (1088)
.+|-..+.+++++|+|+ ++++...++.|.+||.. ++.+..... .....+|...+..+++ .++++
T Consensus 26 ~g~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~-------------~~~~~~~~~~p~~i~~~~~~g~ 90 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGE-------------CGKRDSQLLYPNRVAVVRNSGD 90 (286)
T ss_dssp TTCBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECC-------------BSSSTTCBSSEEEEEEETTTTE
T ss_pred CCccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEecc-------------cCCCcccccCceEEEEEcCCCe
Confidence 35556899999999998 78888888999999987 554432110 0001235567899999 57777
Q ss_pred EEEEEeC-CCEEEEEEccCCCcccceeEec-cCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEec--cCC
Q 001386 410 LLGVAYS-KHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE--GHG 485 (1088)
Q Consensus 410 ~las~~~-dg~i~vwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~--~~~ 485 (1088)
++++... ++.|.+|| .+++.+. .+. .+...+..++++++|+ ++++...++.|.+||. +++.+..+. .+.
T Consensus 91 l~v~~~~~~~~i~~~d-~~g~~~~---~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~ 163 (286)
T 1q7f_A 91 IIVTERSPTHQIQIYN-QYGQFVR---KFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQ-NGNVLHKFGCSKHL 163 (286)
T ss_dssp EEEEECGGGCEEEEEC-TTSCEEE---EECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECT-TSCEEEEEECTTTC
T ss_pred EEEEcCCCCCEEEEEC-CCCcEEE---EecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcC-CCCEEEEeCCCCcc
Confidence 7776643 78999999 4555433 232 3445789999999998 7777777899999995 566666664 344
Q ss_pred ccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCC--CceEEEEEccCCCEEEEEeeCCCCce-eEEEEeC
Q 001386 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTRMAYSANGRRLFSCGTSKEGES-FLVEWNE 562 (1088)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~g~~l~~~~~~~~~~~-~i~iwd~ 562 (1088)
..+..+++ ++++.++++...++.|++||.. ++....+.... ..+..++++++|+.+++... ++ .|.+||.
T Consensus 164 ~~p~~i~~--~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~----~~~~i~~~~~ 236 (286)
T 1q7f_A 164 EFPNGVVV--NDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNH----NNFNLTIFTQ 236 (286)
T ss_dssp SSEEEEEE--CSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECS----SSCEEEEECT
T ss_pred CCcEEEEE--CCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCC----CCEEEEEECC
Confidence 56888888 4467788888889999999974 34444444332 46889999999987777643 32 6999995
Q ss_pred CCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 001386 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1088)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1088)
+++.+..+..+. ....+..++++|+|+.+++ +.++.|++|+....
T Consensus 237 -~g~~~~~~~~~~-~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 237 -DGQLISALESKV-KHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp -TSCEEEEEEESS-CCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred -CCCEEEEEcccC-CCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 566777776543 1234788999999976666 67999999998653
No 182
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.64 E-value=8.1e-14 Score=153.31 Aligned_cols=274 Identities=10% Similarity=0.025 Sum_probs=189.1
Q ss_pred CCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~ 414 (1088)
..|.+++|+|++. .++..+.++.++.| .++.... +.++...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~-------------------~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSN-SAVPIISESELQTI---TAEPWLE-------------------ISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGG-CSSCCCCGGGSCEE---ECEEEEE-------------------EESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCcc-ceeEEeecccCccc---ccceeEE-------------------EeccCccccCcEECCCCCEEEEE
Confidence 3688999999987 46666778899999 2332221 44566778999999999988888
Q ss_pred eCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCC----CcEEEEeCCCCceeEEec--cCCccE
Q 001386 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFE--GHGAPV 488 (1088)
Q Consensus 415 ~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d----~~i~vwd~~~~~~~~~~~--~~~~~v 488 (1088)
..++.|.+||..+++... ....+...+.+++|+++|+ ++++...+ +.|.+||..+++....+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 889999999998876432 1224667899999999998 66666655 689999988877654443 244568
Q ss_pred EEEeeeeeCCceEEEEEec------CCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001386 489 YSLCPHAKENIHFIFSISV------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 562 (1088)
..+++. ++|.++++... .+.|..+|.+..+... +......+..++|+|+|+.++++.. .++.|++||.
T Consensus 138 ~~i~~d--~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFD--SKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL 211 (333)
T ss_dssp EEEEEC--TTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred cceEEC--CCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence 888884 46667766553 2456666555433332 2222335778999999997776542 2456999998
Q ss_pred CC-CceeEEEe-----ccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCC----CCCCceEEEec
Q 001386 563 SE-GAIKRTYQ-----GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----LPENPRICFNK 632 (1088)
Q Consensus 563 ~~-~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~s~ 632 (1088)
.+ +.....+. ... ....+..++++++|+.+++...++.|.+||. +++.+..+..... ...+.+++|+|
T Consensus 212 ~~~g~~~~~~~~~~~~~~~-~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~ 289 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFT-GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIP 289 (333)
T ss_dssp CTTSSSEEEEEEEEEEECC-SSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECT
T ss_pred cCCCcCcccccceEEEecC-CCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECC
Confidence 63 33332211 111 0136788999999998888878899999998 5677777654421 11468999999
Q ss_pred CCCEEEEEeCCC
Q 001386 633 NGTLLAVIANEN 644 (1088)
Q Consensus 633 ~~~~l~~~~~dg 644 (1088)
|++.|++++.++
T Consensus 290 dg~~L~v~~~~g 301 (333)
T 2dg1_A 290 GTNQLIICSNDI 301 (333)
T ss_dssp TSCEEEEEEECG
T ss_pred CCCEEEEEeCcc
Confidence 987777666553
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.62 E-value=1.1e-13 Score=168.92 Aligned_cols=250 Identities=10% Similarity=0.004 Sum_probs=176.5
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCC-----EEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCc--
Q 001386 394 DPGVSVNRVVWSPDGSLLGVAYSKH-----IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-- 466 (1088)
Q Consensus 394 ~h~~~V~~l~~s~dg~~las~~~dg-----~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~-- 466 (1088)
+|...+..++|||||++||.++.++ .|++||+.+|+.... .+.. ..+..++|+|||+ .|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~~~--~~~~~~~wspDg~--~l~~~~~~~~~~ 195 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLER--VKFSCMAWTHDGK--GMFYNAYPQQDG 195 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEEE--ECSCCEEECTTSS--EEEEEECCCCSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--cccC--cccceEEEEeCCC--EEEEEEECCccc
Confidence 4556789999999999999876543 899999999875442 1222 2367899999999 5666666655
Q ss_pred --------------EEEEeCCCCcee--EEec--cCCccEEEEeeeeeCCceEEEEEec-----CCeEEEEECCC-----
Q 001386 467 --------------IKVWDAVTGSRT--YSFE--GHGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYDS----- 518 (1088)
Q Consensus 467 --------------i~vwd~~~~~~~--~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~----- 518 (1088)
|++|++.++... ..+. .|...+..+.| ++||++|+..+. +..|.+||+.+
T Consensus 196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 273 (710)
T 2xdw_A 196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI 273 (710)
T ss_dssp CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE--cCCCCEEEEEEEccCCCccEEEEEECccccccc
Confidence 999999887632 2223 34555777777 567788887765 56899999986
Q ss_pred -CC-ceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCc--eeEEEeccccccccEEEEEEeCCCCEEE
Q 001386 519 -LG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQIL 594 (1088)
Q Consensus 519 -~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 594 (1088)
+. ....+..+...+.. .|+++|+.|+..+........|++||+.++. ..+.+..+. ....+..+.|++++..++
T Consensus 274 ~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 274 TGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH-EKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp CSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC-SSCEEEEEEEETTTEEEE
T ss_pred CCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC-CCCeEEEEEEEcCCEEEE
Confidence 42 34444444444443 5889999998887544346789999998874 234454443 013678889987777788
Q ss_pred EEeCCCc--EEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC----CCcEEEEeCCCCC
Q 001386 595 AAGDDHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 655 (1088)
Q Consensus 595 ~~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iwd~~~~~ 655 (1088)
+...++. |.+|++.+|+.+..+..+ ...+..++++|++..++.... .+.+.+||+.+++
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8888875 566787778877777655 234677889999877664432 4789999998765
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.61 E-value=2.2e-13 Score=149.86 Aligned_cols=273 Identities=9% Similarity=0.083 Sum_probs=183.7
Q ss_pred ccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEE
Q 001386 735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF 814 (1088)
Q Consensus 735 ~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 814 (1088)
..+.+++|++++..++....++.++.|.-. .... +. .+...+.+++|+++|++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~--~~--~~~~~~~~~~~~~~g~l~~ 60 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE---------------------PWLE--IS--KKGLQLEGLNFDRQGQLFL 60 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE---------------------EEEE--EE--SSCCCEEEEEECTTSCEEE
T ss_pred cccceeeecCCccceeEEeecccCcccccc---------------------eeEE--Ee--ccCccccCcEECCCCCEEE
Confidence 346677888888877777777777777311 0111 11 1445678999999999877
Q ss_pred EEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCC----CeEEEEEcCCceeeeeec--cccCCeeE
Q 001386 815 SAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYNARSSEVISKLE--GHSKRVTG 887 (1088)
Q Consensus 815 ~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d----g~i~lwd~~~~~~~~~l~--~h~~~V~~ 887 (1088)
++. ++.|.+||..+++.......+...+.+++++| +++++++...+ +.|.+||..+++....+. .+...+.+
T Consensus 61 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 139 (333)
T 2dg1_A 61 LDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDD 139 (333)
T ss_dssp EETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEE
T ss_pred EECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccc
Confidence 776 78899999998876655545667899999999 78888877666 689999998876543332 24567899
Q ss_pred EEECCCCCEEEEEeC------CCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE--eCCeEEEEE
Q 001386 888 LVFSDALNILVSSGG------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYE 959 (1088)
Q Consensus 888 l~~s~dg~~las~s~------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~--~d~~i~vwd 959 (1088)
++++|+|+++++... .+.|..+|..+++... ... . . ..+..++|+|||+.|.++ .++.|.+||
T Consensus 140 i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~---~-~---~~~~~i~~~~dg~~l~v~~~~~~~i~~~d 210 (333)
T 2dg1_A 140 MVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--IIQ---N-I---SVANGIALSTDEKVLWVTETTANRLHRIA 210 (333)
T ss_dssp EEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EEE---E-E---SSEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred eEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE--eec---C-C---CcccceEECCCCCEEEEEeCCCCeEEEEE
Confidence 999999998887654 2445555555433221 111 1 1 136789999999977654 467899999
Q ss_pred cCc-ceeeee-----e--ecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceE
Q 001386 960 AEE-LTCLKQ-----W--FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1031 (1088)
Q Consensus 960 ~~~-~~~~~~-----~--~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1088)
..+ +..+.. . ..++ ..+..++++++|.++++...++.|.+||. +++.+..+..... ..+....+.+
T Consensus 211 ~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~----~~g~~~~~~~ 284 (333)
T 2dg1_A 211 LEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR----DEGHMLRSTH 284 (333)
T ss_dssp ECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG----GGTCSCBCCE
T ss_pred ecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCC----ccccccCcce
Confidence 963 332211 1 1122 46788999999998888778899999998 5666655542110 0011114567
Q ss_pred EEECCCCCCEEEEEeCCC
Q 001386 1032 IAAHPLKPTQFAVGLTNG 1049 (1088)
Q Consensus 1032 ~~~~p~d~~~l~~~~~dg 1049 (1088)
++|+| |+..|++++.+|
T Consensus 285 ~~~~~-dg~~L~v~~~~g 301 (333)
T 2dg1_A 285 PQFIP-GTNQLIICSNDI 301 (333)
T ss_dssp EEECT-TSCEEEEEEECG
T ss_pred EEECC-CCCEEEEEeCcc
Confidence 88998 666666565553
No 185
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=3.9e-09 Score=130.13 Aligned_cols=593 Identities=13% Similarity=0.100 Sum_probs=337.2
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~ 415 (1088)
.|.++.-.++|...+ |+.+| +..||-.+ ... +....... .. ..-....|.++...++|..|.+|+
T Consensus 20 ~V~~I~qD~~G~lWi--gT~~G-L~ryDG~~---f~~-----~~~~~~~~--~~--~~l~~n~I~~i~~d~~g~~lWigt 84 (781)
T 3v9f_A 20 YVLSITQDKQGFLWF--ATEEG-LNKFDGTR---FIT-----YYKEEQSS--SV--QSITGNELNEVYTDPVQPVIWIAT 84 (781)
T ss_dssp BEEEEEECTTSCEEE--EESSC-EEEECSSS---EEE-----ECCCSSCS--SS--CCCSCSCEEEEEECSSSSEEEEEE
T ss_pred EeEEEEECCCCCEEE--ccCCc-CccccCCc---eEE-----EEcCCCCC--cc--ccccccccceEEEcCCCCEEEEEe
Confidence 799999999997444 44545 66666432 111 11000000 00 001235699999998888466677
Q ss_pred CCCEEEEEEccCCCcccceeE-ecc---CCCCEEEEEecC--CCCcEEEEEEeCCCcEEEEeCCCCceeEEec-----cC
Q 001386 416 SKHIVQLYAYHGGSDARQQLE-IDA---HVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSFE-----GH 484 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~-~~~---h~~~v~~~~~s~--d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~-----~~ 484 (1088)
.++-+..||..+++....... ... ....|.++.... ++. +..++.++.|..+|..+++...... ..
T Consensus 85 ~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~ 161 (781)
T 3v9f_A 85 QRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTHYNKSTVPALP 161 (781)
T ss_dssp SSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEEESTTTCTTCS
T ss_pred CCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEeeccCcccCCC
Confidence 774499999887642210000 000 123688888877 665 4445545568899987765433211 11
Q ss_pred CccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEec-------CCCCceEEEEEccCCCEEEEEeeCCCCceeE
Q 001386 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------APGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1088)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i 557 (1088)
...|.++.. +.++ .|..++.++-+..||..+.+...... .....|.++...++|...+... . -+
T Consensus 162 ~~~i~~i~~--d~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~-----~-Gl 232 (781)
T 3v9f_A 162 SEQTWTATE--AEDG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS-----K-GL 232 (781)
T ss_dssp CCCEEEEEE--EETT-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET-----T-EE
T ss_pred ccceEEEEE--CCCC-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC-----C-cH
Confidence 345777665 3344 44556666568888877654332211 1234688999888888766542 1 38
Q ss_pred EEEeCCCCceeEEEecc----ccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEe-------CC-----CC
Q 001386 558 VEWNESEGAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID-------AG-----GG 621 (1088)
Q Consensus 558 ~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~-------~~-----~~ 621 (1088)
.+||..+++........ ......|.++...++|. +..|+..+-|.++|..++....... .. -.
T Consensus 233 ~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~ 311 (781)
T 3v9f_A 233 ALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLS 311 (781)
T ss_dssp EEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBS
T ss_pred heECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCC
Confidence 99998777554322111 11235688888877765 5566665678899987765432211 00 11
Q ss_pred CCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcc
Q 001386 622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 701 (1088)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l 701 (1088)
...|.++...++|. |-+|+.++-|..++........ ... .+ ..
T Consensus 312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~----------~~----------------------~~--- 354 (781)
T 3v9f_A 312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT-WSY----------SP----------------------TQ--- 354 (781)
T ss_dssp SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE-EC------------------------------------C---
T ss_pred CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCccee-ecc----------Cc----------------------cc---
Confidence 23467788888776 4456666677777765432110 000 00 00
Q ss_pred cccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCC
Q 001386 702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQP 781 (1088)
Q Consensus 702 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 781 (1088)
..+.......|.+++..++|. +..++.++-+..|+...... ..+.
T Consensus 355 -------------------------~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~--------~~~~- 399 (781)
T 3v9f_A 355 -------------------------MNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVA--------IYNK- 399 (781)
T ss_dssp -------------------------CCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEE--------ECC--
T ss_pred -------------------------cccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeE--------EEcc-
Confidence 000001234578888888877 44555455566666432111 0000
Q ss_pred CCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEec--CCCCCeEEEEEcCCCCcEEEEEe
Q 001386 782 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM--PPSPTATSLAFNPHDNNVIAIGM 859 (1088)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~sp~d~~~lasg~ 859 (1088)
.+.......|.+++..++|.+.+...++.+..++..+++...... .....|.++...+ ++.+. .|+
T Consensus 400 ----------~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lw-igt 467 (781)
T 3v9f_A 400 ----------ENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIW-IGT 467 (781)
T ss_dssp --------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEE-EEE
T ss_pred ----------CCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEE-EEE
Confidence 000114567899999888887775556778999987765433221 2346789999887 56544 455
Q ss_pred CCCeEEEEEcCCceeeeeeccc-----cCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCC
Q 001386 860 DDSTILIYNARSSEVISKLEGH-----SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS 934 (1088)
Q Consensus 860 ~dg~i~lwd~~~~~~~~~l~~h-----~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1088)
. +-|..||..+++........ ...|.++...++|.+.+....+| |..||..+++... +....+. ....
T Consensus 468 ~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~---~~~~~~l--~~~~ 540 (781)
T 3v9f_A 468 H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRK---FNQYEGF--CSNT 540 (781)
T ss_dssp T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEE---ECTTTTC--SCSC
T ss_pred C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEE---ccCCCCC--CCCe
Confidence 5 55899998876543322212 46799999999998776543345 7788887654222 2211221 1246
Q ss_pred eEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecC---CCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEE
Q 001386 935 ETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1011 (1088)
Q Consensus 935 v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~ 1011 (1088)
|.++...++|++.+++.+|-+..||..+++... +... ....|.++...++|.+.++ +.+| |..++..++... .
T Consensus 541 i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~~~~~~~-~ 616 (781)
T 3v9f_A 541 INQIYRSSKGQMWLATGEGLVCFPSARNFDYQV-FQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYITSKKCFY-T 616 (781)
T ss_dssp EEEEEECTTSCEEEEETTEEEEESCTTTCCCEE-ECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEETTTTEEE-E
T ss_pred eEEEEECCCCCEEEEECCCceEEECCCCCcEEE-ccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEECCCCceE-E
Confidence 899999999998887765544889988765332 2211 1346788888888886664 4455 777888776543 3
Q ss_pred eccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001386 1012 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1058 (1088)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~ 1058 (1088)
+....-++.. .....++...+ +|. |..|+.+| +..++...
T Consensus 617 ~~~~dGl~~~----~f~~~~~~~~~-~G~-l~~g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 617 YDHSNNIPQG----SFISGCVTKDH-NGL-IYFGSING-LCFFNPDI 656 (781)
T ss_dssp ECGGGTCCSS----CEEEEEEEECT-TSC-EEEEETTE-EEEECSCC
T ss_pred ecccCCcccc----ccccCceEECC-CCE-EEEECCCc-eEEEChhh
Confidence 3322222211 22234566676 666 55577777 55666643
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.60 E-value=1.5e-13 Score=167.89 Aligned_cols=250 Identities=10% Similarity=-0.007 Sum_probs=173.0
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccC----cEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
+|...+..++|||||++++.+.+.+| +|++||+.+|+.+... + ....+..++|+||
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~------------------~--~~~~~~~~~wspD 181 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV------------------L--ERVKFSCMAWTHD 181 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE------------------E--EEECSCCEEECTT
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc------------------c--cCcccceEEEEeC
Confidence 45557889999999995444433333 8999999999866420 1 1123667999999
Q ss_pred CCEEEEEeCCCE----------------EEEEEccCCCccc-ceeEeccCCCCEEEEEecCCCCcEEEEEEeC-----CC
Q 001386 408 GSLLGVAYSKHI----------------VQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----DK 465 (1088)
Q Consensus 408 g~~las~~~dg~----------------i~vwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~-----d~ 465 (1088)
|+.|+.++.++. |++|++.+++... .......|...+..++|+|||+. |+.++. +.
T Consensus 182 g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~ 259 (710)
T 2xdw_A 182 GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVN 259 (710)
T ss_dssp SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCC
T ss_pred CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCcc
Confidence 999999987765 9999998875321 11122235566889999999995 444432 56
Q ss_pred cEEEEeCCC------Cc-eeEEeccCCccEEEEeeeeeCCceEEEEEecC----CeEEEEECCCCCc--eEEecCCCC--
Q 001386 466 TIKVWDAVT------GS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGA--RVDYDAPGL-- 530 (1088)
Q Consensus 466 ~i~vwd~~~------~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~--~~~~~~~~~-- 530 (1088)
.|.+||+.+ +. ....+..+...+... +++ +|..|+..+.. +.|.+||+.+... ...+..+..
T Consensus 260 ~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~ 336 (710)
T 2xdw_A 260 RLWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD 336 (710)
T ss_dssp EEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC
T ss_pred EEEEEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCC
Confidence 899999987 53 456666666665543 443 44455544432 3699999987652 233333333
Q ss_pred ceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEe----CCCcEEEEE
Q 001386 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWD 606 (1088)
Q Consensus 531 ~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd 606 (1088)
.+..++|++++.++++... ++...|++|++.+|+.++.+..+. ..+..+.++|+++.++... ..+.|+.||
T Consensus 337 ~~~~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~~---~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 337 VLEWVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLEV---GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411 (710)
T ss_dssp EEEEEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCCS---SEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred eEEEEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCCC---ceEEEEecCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 6778899877777766654 345678999988888777777665 7788899999988776432 457899999
Q ss_pred cCCCe
Q 001386 607 MNKVQ 611 (1088)
Q Consensus 607 ~~~~~ 611 (1088)
+.+++
T Consensus 412 ~~tg~ 416 (710)
T 2xdw_A 412 LTKEE 416 (710)
T ss_dssp TTSSS
T ss_pred CCCCc
Confidence 98877
No 187
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.60 E-value=2.4e-13 Score=146.48 Aligned_cols=250 Identities=12% Similarity=0.046 Sum_probs=177.3
Q ss_pred hhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1088)
...+..+..+.....+++|+|+|+.+++++..++.|..||..++ ... +..+...+.+++
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------~~~~~~~~~~l~ 75 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------EMHPSHHQNGHC 75 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-------------------EESSCSSEEEEE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-------------------EECCCCCcceee
Confidence 34445666666688999999999877889999999999999887 322 334667899999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccceeEecc-CCCCEEEEEecCCCCcEEEEEE----e-------------CCC
Q 001386 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITC----G-------------DDK 465 (1088)
Q Consensus 404 ~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~l~l~s~----s-------------~d~ 465 (1088)
++|+|+++++...++.|.+||..+++.........+ ....+..++++|+|+ ++++. + ..+
T Consensus 76 ~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~ 153 (296)
T 3e5z_A 76 LNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGR 153 (296)
T ss_dssp ECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSC
T ss_pred ECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCc
Confidence 999999888877778999999988764321111111 123567899999998 66763 2 123
Q ss_pred cEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECC-CCCc---eEEecCCCCceEEEEEccCC
Q 001386 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGA---RVDYDAPGLGCTRMAYSANG 541 (1088)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~---~~~~~~~~~~v~~~~~s~~g 541 (1088)
.|..+|.. ++ +..+..+......++| +++++.+++.+.++.|.+|++. .+.. ...+......+..++++++|
T Consensus 154 ~l~~~~~~-g~-~~~~~~~~~~~~gi~~--s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G 229 (296)
T 3e5z_A 154 WVFRLAPD-GT-LSAPIRDRVKPNGLAF--LPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGG 229 (296)
T ss_dssp EEEEECTT-SC-EEEEECCCSSEEEEEE--CTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTS
T ss_pred EEEEECCC-CC-EEEeecCCCCCccEEE--CCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCC
Confidence 56666644 44 4445556667788888 4567777778888999999997 3332 22333334456789999999
Q ss_pred CEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEE-eCCCCEEEEEeCCCcEEEEEcCCCee
Q 001386 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAGDDHVIKIWDMNKVQL 612 (1088)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~s~dg~i~iwd~~~~~~ 612 (1088)
+..++. .+.|.+||.. ++.+..+..+. . +.+++| .|+++.|++++.+ .+..++..+.+.
T Consensus 230 ~l~v~~------~~~v~~~~~~-g~~~~~~~~~~---~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 230 LIWASA------GDGVHVLTPD-GDELGRVLTPQ---T-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp CEEEEE------TTEEEEECTT-SCEEEEEECSS---C-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred CEEEEc------CCeEEEECCC-CCEEEEEECCC---C-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 876665 2349999986 77777887766 4 888899 5888989988875 455556655443
No 188
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.59 E-value=3.5e-13 Score=149.24 Aligned_cols=220 Identities=15% Similarity=0.121 Sum_probs=152.9
Q ss_pred CeeEEEEecCCCEEEEEe-C---Cc--EEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCC------------
Q 001386 800 AVPCFALSKNDAYLFSAS-G---GV--ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD------------ 861 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~-d---g~--i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d------------ 861 (1088)
.+..++|||||+.|+..+ + +. |.+|++.+++.......+. +..++|+| |++.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEECT-TSSEEEEEEECCCC---------
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeECC-CCCEEEEEEccCCCcCCcEEEcc
Confidence 467899999999999886 2 33 8888998887665554333 99999999 78888877632
Q ss_pred ---------------CeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCC-------cEEEEEcCCCceeee
Q 001386 862 ---------------STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA-------QIFVWDVDGWGIQTC 919 (1088)
Q Consensus 862 ---------------g~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg-------~i~iwd~~~~~~~~~ 919 (1088)
..|++||+.+++.+..+.. . .+..++|+||| ++++++.++ ...||.+++++..
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-- 211 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-- 211 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE--
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE--
Confidence 5799999999887555554 3 78999999999 877776542 4455555543321
Q ss_pred eeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eC--------CeEEEEEcCcceeeeeeecCCCcCEEE-EEEeeCCCEE
Q 001386 920 RSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE--------THLAIYEAEELTCLKQWFPISSVPISQ-ATFSCDCRMV 989 (1088)
Q Consensus 920 ~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d--------~~i~vwd~~~~~~~~~~~~~h~~~v~~-l~fs~dg~~l 989 (1088)
.+... . .+..+ ||||++|+.. .+ ..|.+|| +++. ..+..+|...+.. +.|+ || ++
T Consensus 212 -~l~~~---~----~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~~~~~~~~~~~~s-dg-~~ 276 (347)
T 2gop_A 212 -KMFEK---V----SFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-MGILDEVDRGVGQAKIKD-GK-VY 276 (347)
T ss_dssp -EEEEE---E----SEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-EESSTTCCSEEEEEEEET-TE-EE
T ss_pred -EeccC---c----ceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce-EeccccCCcccCCccEEc-Cc-EE
Confidence 12111 1 24444 9999998874 22 3688888 5554 3445566778886 9999 98 88
Q ss_pred EEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcE-EEEeCC
Q 001386 990 FTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEV-YVIEPN 1057 (1088)
Q Consensus 990 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v-~~w~l~ 1057 (1088)
++++.++.+++| +.+++...... .. ....+++|+| .++++++.++.. .+|.+.
T Consensus 277 ~~~~~~~~~~l~-~~~g~~~~~~~------~~-----~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 277 FTLFEEGSVNLY-IWDGEIKPIAK------GR-----HWIMGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEETTEEEEE-EESSSEEEEEC------SS-----SEEEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred EEEecCCcEEEE-EcCCceEEEec------CC-----CeEEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 999999999999 88666533221 01 1235678887 577777777765 777664
No 189
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.57 E-value=1.4e-13 Score=167.47 Aligned_cols=249 Identities=11% Similarity=-0.000 Sum_probs=167.7
Q ss_pred cCCCCCeEEEEECCCCCEEEEE-----eCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCc-
Q 001386 393 RDPGVSVNRVVWSPDGSLLGVA-----YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT- 466 (1088)
Q Consensus 393 ~~h~~~V~~l~~s~dg~~las~-----~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~- 466 (1088)
.+|...+..++|||||++||.+ +.+..|++||+.+|+.+... .+... ....++|+|||+ .|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~~--~~~~~~wspDg~--~l~~~~~d~~~ 191 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-VIEGG--KYATPKWTPDSK--GFYYEWLPTDP 191 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-CBSCC--TTCCCEECTTSS--EEEEEECCCCT
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-ccCcc--cccceEEecCCC--EEEEEEecCCC
Confidence 3566789999999999999954 34568999999999754110 12111 126789999999 6777777765
Q ss_pred ------------EEEEeCCCCce----eEEeccCCccEEEEeeeeeCCceEEEEEecCC----eEEEEECCCCCceEEec
Q 001386 467 ------------IKVWDAVTGSR----TYSFEGHGAPVYSLCPHAKENIHFIFSISVDG----KIKAWLYDSLGARVDYD 526 (1088)
Q Consensus 467 ------------i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~ 526 (1088)
|++|++.++.. +.....|...+..+.+ ++||++|+..+.++ .|.+|+..++.. ..+.
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~ 268 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL--SRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLV 268 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE--CTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEE
T ss_pred CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE--CCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEee
Confidence 99999998862 3333345567777777 56778888877666 677776544433 3333
Q ss_pred CCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCce---eEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEE
Q 001386 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 603 (1088)
Q Consensus 527 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 603 (1088)
.+...+....+ ++|. ++..+.....+..|++||+.++.. ...+..+. ...+..++++ ++..+++...|+..+
T Consensus 269 ~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~~l~~~~~~-~~~lv~~~~~dg~~~ 343 (695)
T 2bkl_A 269 KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDS--SASLLSVSIV-GGHLSLEYLKDATSE 343 (695)
T ss_dssp ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCS--SCEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCC--CCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 34444555555 6777 665554333467899999988753 33333331 2467888888 667788888999888
Q ss_pred EEEcC-CCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC----CCcEEEEeCCCCC
Q 001386 604 IWDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 655 (1088)
Q Consensus 604 iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iwd~~~~~ 655 (1088)
+|.+. +++....+..+. ...+..++++|++..++.... .++|++||+.+++
T Consensus 344 l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 344 VRVATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 88654 455555554331 224667888999987774433 4789999998765
No 190
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.57 E-value=4.2e-13 Score=141.61 Aligned_cols=247 Identities=8% Similarity=-0.009 Sum_probs=180.1
Q ss_pred CCCEEEEEe-CCcEEEEEcCCceeEEEecCCC-CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccc-CCe
Q 001386 809 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRV 885 (1088)
Q Consensus 809 dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~-~~V 885 (1088)
.+++|++++ ++.|.+||.++|+.+.++..+. ..+.+++++| +|++++ +.++.|+.||. +|+.+..+..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 456777776 8999999999999999998776 5789999999 888888 45788999998 899999888753 478
Q ss_pred eEEEECCCCCEEEEEeC-CCcEEEEEcCCCceeeeeeeecC-CCCccCCCCeEEEEEcCCCCEEEEE-eCCeEEEEEcCc
Q 001386 886 TGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTP-DGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE 962 (1088)
Q Consensus 886 ~~l~~s~dg~~las~s~-Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~vwd~~~ 962 (1088)
.++.+.+||+++++.+. ++.|..+|.+ ++......+... .++.. ....+++.++|+++++. .++.|..||.+
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~~---~~~~v~~~~~G~~lv~~~~~~~v~~~d~~- 154 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPHA---QFRQINKNKKGNYLVPLFATSEVREIAPN- 154 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGGG---SCSCCEECTTSCEEEEETTTTEEEEECTT-
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCcccc---cccCceECCCCCEEEEecCCCEEEEECCC-
Confidence 89999999999999887 7777777763 432222222111 11111 34567889999999985 67899999998
Q ss_pred ceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEE
Q 001386 963 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1042 (1088)
Q Consensus 963 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l 1042 (1088)
|+.+.++... ..+.++.+.++|..+++++.++.|..+|..+|+.+.++....... . .-.++..++..+ +|+++
T Consensus 155 G~~~w~~~~~--~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~-~---~l~~~~~~~~~~-~G~i~ 227 (276)
T 3no2_A 155 GQLLNSVKLS--GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEG-V---QLFFVAQLFPLQ-NGGLY 227 (276)
T ss_dssp SCEEEEEECS--SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBS-C---CCSEEEEEEECT-TSCEE
T ss_pred CCEEEEEECC--CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCC-c---cccccccceEcC-CCCEE
Confidence 9988876542 445667889999999998888899999999999998886322111 0 113456778888 78888
Q ss_pred EEEeCC--------CcEEEEeC-CCCCCCccccCCCCc
Q 001386 1043 AVGLTN--------GEVYVIEP-NEPGDTWAVLPPDEI 1071 (1088)
Q Consensus 1043 ~~~~~d--------g~v~~w~l-~~~~~~~~~~~~~~~ 1071 (1088)
++.... +..+++++ .+.+..|.......-
T Consensus 228 v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~ 265 (276)
T 3no2_A 228 ICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKF 265 (276)
T ss_dssp EEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTS
T ss_pred EEeccCccccccccCCceEEEECCCCCEEEEecCcccc
Confidence 877421 23456666 355666765444443
No 191
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.57 E-value=2.3e-12 Score=139.27 Aligned_cols=204 Identities=13% Similarity=0.069 Sum_probs=142.9
Q ss_pred eeEEEEecCCCEEEEEe---CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-ceeee
Q 001386 801 VPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVIS 876 (1088)
Q Consensus 801 v~~~~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~-~~~~~ 876 (1088)
...++++|||+++.++. ++.|.++|+.+++.+.++..... ...+.. +.+.+++.+.||++.+.++.+ ++...
T Consensus 139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~ 214 (386)
T 3sjl_D 139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEI 214 (386)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecC-CCceeEEECCCCCEEEEECCCCCeEEE
Confidence 44588999999888775 47899999999999998864331 233433 566777888899999999876 55432
Q ss_pred eeccc----cCCee-EEEEC-CCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecC------CCCccCCCCeEEEEEcCCC
Q 001386 877 KLEGH----SKRVT-GLVFS-DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP------DGVMTLAPSETHIQFHKDQ 944 (1088)
Q Consensus 877 ~l~~h----~~~V~-~l~~s-~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~fs~dg 944 (1088)
....+ ..++. ...|. ++|++++ .+.+|.|.+.|+.++.......+... .+... +....+++++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--~g~q~~a~~~~~ 291 (386)
T 3sjl_D 215 THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP--GGWQQVAYHRAL 291 (386)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE--CSSSCEEEETTT
T ss_pred eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccC--CCcceeeECCCC
Confidence 22111 12221 24554 6776555 66689999999987643222222211 11111 234568889999
Q ss_pred CEEEEEe-----------CCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCC-EEEEEe-CCCcEEEEEcCCCceEEE
Q 001386 945 TRFLLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCR 1011 (1088)
Q Consensus 945 ~~l~~~~-----------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~s~s-~dg~v~vwd~~~~~~~~~ 1011 (1088)
+.+.+.. .+.|.++|+.+++.+..+..+ ..+..++||+|++ +|+++. .++.|.|+|..+++.+.+
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS 369 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC--CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 9988842 146999999999999987765 3678999999997 666654 589999999999999988
Q ss_pred ec
Q 001386 1012 IL 1013 (1088)
Q Consensus 1012 ~~ 1013 (1088)
+.
T Consensus 370 i~ 371 (386)
T 3sjl_D 370 VN 371 (386)
T ss_dssp EC
T ss_pred ec
Confidence 86
No 192
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.57 E-value=8.5e-12 Score=137.70 Aligned_cols=203 Identities=10% Similarity=0.011 Sum_probs=141.5
Q ss_pred eEEEEecCCCEEEEEe---CCcEEEEEcCCceeEEE-ecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeee
Q 001386 802 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 877 (1088)
Q Consensus 802 ~~~~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~ 877 (1088)
..++++|||++|++++ ++.|.++| .+++.+.. +.... ++.+.|.+.+.+++.+.||.+.++|. +++.+..
T Consensus 128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~ 201 (373)
T 2mad_H 128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA 201 (373)
T ss_pred cceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence 4688999999998875 36799999 99998877 65332 24555645567777888999999999 8876633
Q ss_pred ec-----cccCC-eeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCC----ccCCCCeEEEEEcCCCCEE
Q 001386 878 LE-----GHSKR-VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV----MTLAPSETHIQFHKDQTRF 947 (1088)
Q Consensus 878 l~-----~h~~~-V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~fs~dg~~l 947 (1088)
.. ....+ .....+++++..++..+..+.+.+.|+.+........+...... .........++|+||++.+
T Consensus 202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~l 281 (373)
T 2mad_H 202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI 281 (373)
T ss_pred EeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEE
Confidence 21 11122 13356677776655556788999999976542222222211110 0001234458899999988
Q ss_pred EEEe-----------CCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCC-EEEEEe-CCCcEEEEEcCCCceEEEe
Q 001386 948 LLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRI 1012 (1088)
Q Consensus 948 ~~~~-----------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~s~s-~dg~v~vwd~~~~~~~~~~ 1012 (1088)
.++. ++.|.++|+.+++.+..+..+ ....+++|+|||+ .++++. .++.|.|||+.+++.+.++
T Consensus 282 yV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 282 YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC--CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 8742 257999999999999887543 3688999999999 677776 5899999999999999874
No 193
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.56 E-value=5e-13 Score=145.89 Aligned_cols=278 Identities=10% Similarity=-0.012 Sum_probs=190.9
Q ss_pred ccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccce
Q 001386 355 NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 434 (1088)
Q Consensus 355 ~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~ 434 (1088)
.+++|.+||..+++........ .. -.........+++. +++..++...++.|.+||..+++.+..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~----------~n---~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~- 79 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYR----------AN---GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGR- 79 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHH----------HH---SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEE-
T ss_pred CCceEEEEECCCCEEhhhhHhh----------hc---CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEE-
Confidence 3789999999999865431000 00 01122456778874 455555666678999999999986653
Q ss_pred eEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCC-----ccEEEEeeeeeCCceEEEEEe-cC
Q 001386 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-----APVYSLCPHAKENIHFIFSIS-VD 508 (1088)
Q Consensus 435 ~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~s~~-~d 508 (1088)
+. .......++++++++ ++++...++.|.+||+.+++....+.... .....+++ . ++..+++.. .+
T Consensus 80 --i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~~lyv~~~~~~ 151 (328)
T 3dsm_A 80 --IT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GKYVYVNCWSYQ 151 (328)
T ss_dssp --EE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TTEEEEEECTTC
T ss_pred --cC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CCEEEEEcCCCC
Confidence 33 346788999999985 56666578999999999999887776433 13445555 2 444555544 48
Q ss_pred CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCC------ceeEEEEeCCCCceeEEEeccccccccEE
Q 001386 509 GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG------ESFLVEWNESEGAIKRTYQGLQLQHNSVS 582 (1088)
Q Consensus 509 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~------~~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 582 (1088)
+.|.++|..+.+....+... .....++++|+|++++++..+... .+.|.++|..+++....+.... .....
T Consensus 152 ~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~ 228 (328)
T 3dsm_A 152 NRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPS 228 (328)
T ss_dssp CEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCE
T ss_pred CEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC--CCCce
Confidence 99999999988776665543 345678999999976665432110 2579999999998887775432 13678
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec-CCCEEEEE----eCCCcEEEEeCCCCCcc
Q 001386 583 VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVI----ANENRIKILETPESNSV 657 (1088)
Q Consensus 583 ~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~----~~dg~i~iwd~~~~~~~ 657 (1088)
.++++|+++.++++.. .|.+||..+++................++++| ++.++++. ..++.|.+|+.. ++.+
T Consensus 229 ~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~ 305 (328)
T 3dsm_A 229 EVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI 305 (328)
T ss_dssp EEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred eEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence 9999999999988765 89999998887642111111112457899999 56666665 568899999998 7666
Q ss_pred cccc
Q 001386 658 DAAG 661 (1088)
Q Consensus 658 ~~~~ 661 (1088)
..+.
T Consensus 306 ~~i~ 309 (328)
T 3dsm_A 306 DEFY 309 (328)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
No 194
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.56 E-value=1.3e-12 Score=142.68 Aligned_cols=273 Identities=8% Similarity=0.024 Sum_probs=184.8
Q ss_pred ccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCC
Q 001386 705 EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHG 784 (1088)
Q Consensus 705 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 784 (1088)
+.++++.++|....+....................+++. +++.+++...++.+.+||..+.+.
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~---------------- 76 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE---------------- 76 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE----------------
T ss_pred CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE----------------
Confidence 346788888876433211110000011122345667774 455556666678899987654322
Q ss_pred CcceeeccCCCCCCCCeeEEEEecCCCEEEEE-eCCcEEEEEcCCceeEEEecCCC-----CCeEEEEEcCCCCcEEEEE
Q 001386 785 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPS-----PTATSLAFNPHDNNVIAIG 858 (1088)
Q Consensus 785 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~l~~sp~d~~~lasg 858 (1088)
+.+.. ....+..++++++++.+++. .++.|.+||..+++....+.... .....+++ . +++++++.
T Consensus 77 --~~~i~-----~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~ 147 (328)
T 3dsm_A 77 --VGRIT-----GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNC 147 (328)
T ss_dssp --EEEEE-----CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEE
T ss_pred --EEEcC-----CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEc
Confidence 22221 24567899999999655555 37899999999999887766333 14556777 3 56666655
Q ss_pred e-CCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCC----------CcEEEEEcCCCceeeeeeeecCCC
Q 001386 859 M-DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD----------AQIFVWDVDGWGIQTCRSLQTPDG 927 (1088)
Q Consensus 859 ~-~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~D----------g~i~iwd~~~~~~~~~~~~~~~~~ 927 (1088)
. .++.|.++|+.+++.+..+... .....++++|+|++++++..+ +.|.++|..+++... .+....+
T Consensus 148 ~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~~~~g 224 (328)
T 3dsm_A 148 WSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFKFKLG 224 (328)
T ss_dssp CTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEECCTT
T ss_pred CCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE--EEecCCC
Confidence 4 4889999999999988877653 345789999999988777655 789999998865332 2222222
Q ss_pred CccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeee-eecCCCcCEEEEEEeeC-CCEEEEE----eCCCcEEEE
Q 001386 928 VMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQ-WFPISSVPISQATFSCD-CRMVFTS----FVDGTLSIH 1001 (1088)
Q Consensus 928 ~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~-~~~~h~~~v~~l~fs~d-g~~l~s~----s~dg~v~vw 1001 (1088)
. ....++|+||+++|.++.. .|.+||..+++.... +...+......++++|+ +...++. ..++.|.+|
T Consensus 225 ~-----~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~ 298 (328)
T 3dsm_A 225 D-----WPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRY 298 (328)
T ss_dssp C-----CCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEE
T ss_pred C-----CceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEE
Confidence 1 3689999999999988655 999999998886432 22222467899999995 5555555 568999999
Q ss_pred EcCCCceEEEec
Q 001386 1002 EASNLEVQCRIL 1013 (1088)
Q Consensus 1002 d~~~~~~~~~~~ 1013 (1088)
|.. |+++.++.
T Consensus 299 d~~-g~~~~~i~ 309 (328)
T 3dsm_A 299 SPQ-GKLIDEFY 309 (328)
T ss_dssp CTT-CCEEEEEE
T ss_pred CCC-CCEEEEEE
Confidence 998 99888876
No 195
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.55 E-value=2e-11 Score=131.67 Aligned_cols=285 Identities=11% Similarity=0.051 Sum_probs=195.0
Q ss_pred cccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCC
Q 001386 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1088)
Q Consensus 330 l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~ 409 (1088)
+..+...+.+++++|+|+ ++++...++.|.+||.. ++.... . ...+...+.+++++++|.
T Consensus 10 ~~~~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~-~-----------------~~~~~~~~~~i~~~~~g~ 69 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY-P-----------------LPTPDAKVMCLTISSDGE 69 (299)
T ss_dssp CCSSSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE-E-----------------CSSTTCCEEEEEECTTSC
T ss_pred CCCcCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe-c-----------------CCcccCceeeEEECCCCC
Confidence 344556899999999998 56666667899999988 543221 0 222457899999999999
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE-eccCCccE
Q 001386 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPV 488 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~-~~~~~~~v 488 (1088)
++++...++.|..||.. ++ +... .+......+..+++.++|+ ++++...++.|.+||. +++.... ...+...+
T Consensus 70 l~v~~~~~~~i~~~~~~-g~-~~~~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~ 143 (299)
T 2z2n_A 70 VWFTENAANKIGRITKK-GI-IKEY-TLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGKIREYELPNKGSYP 143 (299)
T ss_dssp EEEEETTTTEEEEECTT-SC-EEEE-ECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred EEEeCCCCCeEEEECCC-Cc-EEEE-eCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCCEEEecCCCCCCCC
Confidence 88887778889999986 33 2211 2223456789999999998 6777767889999998 6654432 23344567
Q ss_pred EEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEE-ecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCce
Q 001386 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1088)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1088)
..+++ ++++.+.++...++.|..||. +++.... .......+..++++++|+..++.. ..+.|..||. +++.
T Consensus 144 ~~i~~--~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~----~~~~i~~~~~-~g~~ 215 (299)
T 2z2n_A 144 SFITL--GSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEI----IGNKIGRITT-SGEI 215 (299)
T ss_dssp EEEEE--CTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET----TTTEEEEECT-TCCE
T ss_pred ceEEE--cCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEcc----CCceEEEECC-CCcE
Confidence 88887 456677777777789999998 4443332 333445688999999998665542 2446999998 6664
Q ss_pred eEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEE
Q 001386 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1088)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1088)
.. +.... ....+..++++++|+.+++...++.|..||. +++ +..+........+.++++ +++++.++.. .+.+.
T Consensus 216 ~~-~~~~~-~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~ 289 (299)
T 2z2n_A 216 TE-FKIPT-PNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIG 289 (299)
T ss_dssp EE-EECSS-TTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEE
T ss_pred EE-EECCC-CCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEE
Confidence 43 32211 1357889999999986666657889999998 454 334433333345788999 8888776655 56677
Q ss_pred EEeCCCC
Q 001386 648 ILETPES 654 (1088)
Q Consensus 648 iwd~~~~ 654 (1088)
.++..++
T Consensus 290 ~~~~~~~ 296 (299)
T 2z2n_A 290 KLTLIKD 296 (299)
T ss_dssp EEEEC--
T ss_pred EEEcCcc
Confidence 7776543
No 196
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.55 E-value=1.8e-12 Score=136.79 Aligned_cols=245 Identities=12% Similarity=0.105 Sum_probs=179.4
Q ss_pred EEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCC-CCeEEEEECCCCCEEEEEeCCCEEEEEEccC
Q 001386 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG 427 (1088)
Q Consensus 349 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~V~~l~~s~dg~~las~~~dg~i~vwd~~~ 427 (1088)
+|++++.++.|.+||.++|+.+.. +..+. ..+.+++++|+|++|+ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 789999999999999999998765 33343 4688999999999998 35778999999 7
Q ss_pred CCcccceeEeccC-CCCEEEEEecCCCCcEEEEEEeC-CCcEEEEeCCCCceeEEeccCC------ccEEEEeeeeeCCc
Q 001386 428 GSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGHG------APVYSLCPHAKENI 499 (1088)
Q Consensus 428 ~~~~~~~~~~~~h-~~~v~~~~~s~d~~~l~l~s~s~-d~~i~vwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~ 499 (1088)
|+.+. .+..+ ...+.++.+.+||+ ++++.+. ++.|..+|. +|+.+.++.... .....+++ .++|
T Consensus 65 G~~~W---~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G 136 (276)
T 3no2_A 65 GRELW---NIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINK--NKKG 136 (276)
T ss_dssp SCEEE---EEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE--CTTS
T ss_pred CCEEE---EEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceE--CCCC
Confidence 77655 34443 34688999999999 7777776 778888884 788877764211 12222333 5688
Q ss_pred eEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccc--
Q 001386 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ-- 577 (1088)
Q Consensus 500 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-- 577 (1088)
.++++...++.|..||.+ ++.+..+.... ...++.+.++|+.++++.. .+.|..+|..+|+.+..+......
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~ 210 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGV 210 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSC
T ss_pred CEEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCc
Confidence 899999999999999988 88877776653 4556788899999987653 446999999999999988754311
Q ss_pred -cccEEEEEEeCCCCEEEEEeCC--------CcEEEEEc-CCCeeeEEEeCCCCCCCCceEE
Q 001386 578 -HNSVSVVHFDTAKDQILAAGDD--------HVIKIWDM-NKVQLLTTIDAGGGLPENPRIC 629 (1088)
Q Consensus 578 -~~~v~~~~~~~~~~~l~~~s~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~ 629 (1088)
-..+..+...++|+.+++.+.. +..+++.+ .+|+.+..+........+..++
T Consensus 211 ~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 211 QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred cccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 1337788888999888887421 23345555 4678877777665555555553
No 197
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.55 E-value=1.5e-11 Score=135.85 Aligned_cols=282 Identities=12% Similarity=-0.006 Sum_probs=186.4
Q ss_pred eecCCCCeEEEEEc-ccC---cEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe-
Q 001386 341 DFHPVQHTLLLVGT-NVG---DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY- 415 (1088)
Q Consensus 341 ~~spdg~~lla~g~-~dg---~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~- 415 (1088)
...|++++++++.. ... +|.++|..+++.+.. +.....+ .++|||||++|+++.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~ 85 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALAST 85 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEec
Confidence 44578875444433 223 889999999987654 2212233 899999999999886
Q ss_pred ---------CCCEEEEEEccCCCcccceeEe-ccC---CCCEEEEEecCCCCcEEEEEEeC--CCcEEEEeCCCCceeEE
Q 001386 416 ---------SKHIVQLYAYHGGSDARQQLEI-DAH---VGNVNDLAFSAPCKQISVITCGD--DKTIKVWDAVTGSRTYS 480 (1088)
Q Consensus 416 ---------~dg~i~vwd~~~~~~~~~~~~~-~~h---~~~v~~~~~s~d~~~l~l~s~s~--d~~i~vwd~~~~~~~~~ 480 (1088)
.++.|.+||..+.+.+..+..- ..+ ......++|+|||+ +|+.+.. ++.|.++| .+++.+.+
T Consensus 86 ~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~--~l~v~n~~~~~~v~viD-~t~~~~~~ 162 (373)
T 2mad_H 86 SFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA--DLLFFQFAAGPAVGLVV-QGGSSDDQ 162 (373)
T ss_pred cccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCC--EEEEEecCCCCeEEEEE-CCCCEEeE
Confidence 3678999999987765533211 000 12345899999999 4555442 57899999 99998877
Q ss_pred -eccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEec-----CCCCc-eEEEEEccCCCEEEEEeeCCCC
Q 001386 481 -FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-----APGLG-CTRMAYSANGRRLFSCGTSKEG 553 (1088)
Q Consensus 481 -~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~-v~~~~~s~~g~~l~~~~~~~~~ 553 (1088)
+.... . +.+.+... ..+++.+.||.+.++|. +++...... ....+ .....+.+++..++..+.
T Consensus 163 ~i~~~~-~---~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---- 232 (373)
T 2mad_H 163 LLSSPT-C---YHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY---- 232 (373)
T ss_pred EcCCCc-e---EEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC----
Confidence 65322 2 23333332 45677788999999999 665542221 11112 233566777666555443
Q ss_pred ceeEEEEeCCCCc--eeEEEeccc-------cccccEEEEEEeCCCCEEEEEeC----------CCcEEEEEcCCCeeeE
Q 001386 554 ESFLVEWNESEGA--IKRTYQGLQ-------LQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLLT 614 (1088)
Q Consensus 554 ~~~i~iwd~~~~~--~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~s~----------dg~i~iwd~~~~~~~~ 614 (1088)
.+.+.+.|..++. .+..+.... ........+.++|+++.++++.. .+.|.++|..+++.+.
T Consensus 233 ~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~ 312 (373)
T 2mad_H 233 SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS 312 (373)
T ss_pred CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEE
Confidence 3458889987553 222222110 00122445788999998888653 3579999999999999
Q ss_pred EEeCCCCCCCCceEEEecCCC-EEEEEe-CCCcEEEEeCCCCCcccc
Q 001386 615 TIDAGGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDA 659 (1088)
Q Consensus 615 ~~~~~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~ 659 (1088)
.+.... ....++|+|||+ +++++. .++.|.++|..+++.+..
T Consensus 313 ~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 313 QISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 997544 368999999999 777776 489999999999887765
No 198
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.54 E-value=3.4e-11 Score=129.81 Aligned_cols=279 Identities=10% Similarity=0.075 Sum_probs=192.9
Q ss_pred ccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCE
Q 001386 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 812 (1088)
Q Consensus 733 ~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 812 (1088)
....+.+++++++|..+++...++.+.+|+.. +. ......+ .....+.+++++++|.+
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-------------------~~~~~~~--~~~~~~~~i~~~~~g~l 70 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GK-------------------ITEYPLP--TPDAKVMCLTISSDGEV 70 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-------------------EEEEECS--STTCCEEEEEECTTSCE
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CC-------------------eEEecCC--cccCceeeEEECCCCCE
Confidence 44678999999999977776667888888754 21 1111111 13467889999999998
Q ss_pred EEEEe-CCcEEEEEcCCcee-EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee-eeccccCCeeEEE
Q 001386 813 LFSAS-GGVISLYIVMTFKT-ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-KLEGHSKRVTGLV 889 (1088)
Q Consensus 813 l~~~~-dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~-~l~~h~~~V~~l~ 889 (1088)
+++.. ++.|..||.. ++. ...+......+.++++++ +++++++...++.|.+||. +++... .+..+...+.+++
T Consensus 71 ~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~ 147 (299)
T 2z2n_A 71 WFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFIT 147 (299)
T ss_dssp EEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEE
T ss_pred EEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEE
Confidence 88776 6889999986 332 222223456789999999 7888887777889999998 555432 2333456789999
Q ss_pred ECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCCeEEEEEcCcceeeee
Q 001386 890 FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQ 968 (1088)
Q Consensus 890 ~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~vwd~~~~~~~~~ 968 (1088)
++++|+++++...++.|..||. +++... +...... ..+..++++++|++.++. .++.|.+||. +++....
T Consensus 148 ~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~~~~----~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~ 218 (299)
T 2z2n_A 148 LGSDNALWFTENQNNAIGRITE-SGDITE---FKIPTPA----SGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEF 218 (299)
T ss_dssp ECTTSCEEEEETTTTEEEEECT-TCCEEE---EECSSTT----CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE
T ss_pred EcCCCCEEEEeCCCCEEEEEcC-CCcEEE---eeCCCCC----CcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEE
Confidence 9999998887777788999998 544322 1111111 247899999999977775 4678999999 6664433
Q ss_pred eecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCC
Q 001386 969 WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN 1048 (1088)
Q Consensus 969 ~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~d 1048 (1088)
....+...+.+++++++|...++...++.|.+||. ++... .+.. +.. .-.+.++++ + ++.++++.. .
T Consensus 219 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~----~~~----~~~~~~i~~-~-~g~l~v~~~-~ 285 (299)
T 2z2n_A 219 KIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE-EYPI----QIK----SAEPHGICF-D-GETIWFAME-C 285 (299)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE-EEEC----SSS----SCCEEEEEE-C-SSCEEEEET-T
T ss_pred ECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceE-EEeC----CCC----CCccceEEe-c-CCCEEEEec-C
Confidence 23345678999999999997776657889999998 45432 2221 111 123566777 6 677666554 6
Q ss_pred CcEEEEeCCC
Q 001386 1049 GEVYVIEPNE 1058 (1088)
Q Consensus 1049 g~v~~w~l~~ 1058 (1088)
+.+..+++..
T Consensus 286 ~~l~~~~~~~ 295 (299)
T 2z2n_A 286 DKIGKLTLIK 295 (299)
T ss_dssp TEEEEEEEC-
T ss_pred CcEEEEEcCc
Confidence 7888887754
No 199
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.53 E-value=4.6e-12 Score=136.97 Aligned_cols=314 Identities=9% Similarity=0.018 Sum_probs=202.0
Q ss_pred eeeCCceEEEEEec-----CCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeC------CCCceeEEEEeC
Q 001386 494 HAKENIHFIFSISV-----DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS------KEGESFLVEWNE 562 (1088)
Q Consensus 494 ~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~------~~~~~~i~iwd~ 562 (1088)
.+.++++.++.... ++.|.+.|..+.+....+.....+ . ++++|||++++++..- ++.++.|.+||.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 34567777777655 689999999998888777655555 3 9999999999887521 112467999999
Q ss_pred CCCceeEEEecccc----ccccEEEEEEeCCCCEEEEEeC--CCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCE
Q 001386 563 SEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636 (1088)
Q Consensus 563 ~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 636 (1088)
.+++.+..+..... .......+.|+|||++++++.. ++.|.++|+.+++.+.++...+. ...+....+.
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~-----~~~~P~g~~~ 191 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-----YHIFPTAPDT 191 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----EEEEEEETTE
T ss_pred CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc-----ceeecCCCce
Confidence 99999888754210 0124556899999999998864 68999999999999999975321 2334445567
Q ss_pred EEEEeCCCcEEEEeCCC-CCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccc
Q 001386 637 LAVIANENRIKILETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 715 (1088)
Q Consensus 637 l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~ 715 (1088)
+++.+.||.+.+.++.+ ++...... .+.+.
T Consensus 192 ~~~~~~DG~~~~v~~~~~g~v~~~~~-------------------------------------------------~~~~~ 222 (386)
T 3sjl_D 192 FFMHCRDGSLAKVAFGTEGTPEITHT-------------------------------------------------EVFHP 222 (386)
T ss_dssp EEEEETTSCEEEEECCSSSCCEEEEC-------------------------------------------------CCCSC
T ss_pred eEEECCCCCEEEEECCCCCeEEEeec-------------------------------------------------ceecc
Confidence 77888899999988875 33211000 00000
Q ss_pred cccCCCcceeeecCCccccccEEEEEEe-cCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCC
Q 001386 716 LFARPSECQSLLLPSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTD 794 (1088)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1088)
. ........+|. ++|+.++ .+.+|.+.+.|+....... ..-|++-... ....
T Consensus 223 ~----------------~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v-----~~~~~~~~~~-----~~~~ 275 (386)
T 3sjl_D 223 E----------------DEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKF-----LPAVEALTEA-----ERAD 275 (386)
T ss_dssp T----------------TSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEE-----CCCEESSCHH-----HHHT
T ss_pred c----------------cccccccceeEcCCCcEEE-EeCCCEEEEEECCCCccee-----ecceeccccc-----cccc
Confidence 0 00000011343 5665444 4446788888765443200 0001100000 0000
Q ss_pred CCCCCCeeEEEEecCCCEEEEEeC-----------CcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCc-EEEEE-eCC
Q 001386 795 SNSQEAVPCFALSKNDAYLFSASG-----------GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIG-MDD 861 (1088)
Q Consensus 795 ~~~~~~v~~~~~s~dg~~l~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~-~lasg-~~d 861 (1088)
.-.......++++++++.+.+... +.|.++|+.+++.+..+... ..+..+++++ |++ +|++. ..+
T Consensus 276 g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~-D~~~~ly~tn~~~ 353 (386)
T 3sjl_D 276 GWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQ-DEKPLLYALSTGD 353 (386)
T ss_dssp TEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECS-SSSCEEEEEETTT
T ss_pred cccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECC-CCCeEEEEEcCCC
Confidence 001223345788999998888641 46999999999999887632 3678999999 665 66654 458
Q ss_pred CeEEEEEcCCceeeeeeccccCCeeEEEECCC
Q 001386 862 STILIYNARSSEVISKLEGHSKRVTGLVFSDA 893 (1088)
Q Consensus 862 g~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~d 893 (1088)
+.|.++|..+++.+.++..- +.-+.|.+++|
T Consensus 354 ~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 354 KTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp TEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred CeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 99999999999999888743 33455677766
No 200
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.53 E-value=3.2e-13 Score=164.34 Aligned_cols=249 Identities=9% Similarity=-0.066 Sum_probs=164.3
Q ss_pred cCCCCceeeeecCCCCeEEEE----EcccCcEEEEecCCCcce-eeeceeeeeeccccccceeeeecCCCCCeEEEEECC
Q 001386 332 EGSSSPMSMDFHPVQHTLLLV----GTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~----g~~dg~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~ 406 (1088)
+|...+..++|||||++++.+ |+.+.+|++||+.+|+.+ .. . +.+. ....++|+|
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~-----------------~~~~--~~~~~~wsp 177 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-V-----------------IEGG--KYATPKWTP 177 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-C-----------------BSCC--TTCCCEECT
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-c-----------------cCcc--cccceEEec
Confidence 566679999999999954433 333468999999999865 21 0 1111 126789999
Q ss_pred CCCEEEEEeCCCE-------------EEEEEccCCCcc-cceeEeccCCCCEEEEEecCCCCcEEEEEEeCCC----cEE
Q 001386 407 DGSLLGVAYSKHI-------------VQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK----TIK 468 (1088)
Q Consensus 407 dg~~las~~~dg~-------------i~vwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~----~i~ 468 (1088)
||+.|+.++.+.. |++|++.++... ..+.....|...+..++|+|||+. |+.++.++ .|.
T Consensus 178 Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~ 255 (695)
T 2bkl_A 178 DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVY 255 (695)
T ss_dssp TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEE
T ss_pred CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEE
Confidence 9999999988776 999999987632 122233346668899999999995 44444444 677
Q ss_pred EEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEe---cCCeEEEEECCCCCc---eEEecCC-CCceEEEEEccCC
Q 001386 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAP-GLGCTRMAYSANG 541 (1088)
Q Consensus 469 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~---~~~~~~~-~~~v~~~~~s~~g 541 (1088)
+||..+++ ...+..+...+....+ . +|.+++... .++.|.+||+++... ...+... ...+..++++ ++
T Consensus 256 ~~~~~~~~-~~~l~~~~~~~~~~~~--~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~ 330 (695)
T 2bkl_A 256 WKRPGEKD-FRLLVKGVGAKYEVHA--W-KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG 330 (695)
T ss_dssp EECTTCSS-CEEEEECSSCCEEEEE--E-TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT
T ss_pred EEcCCCCc-eEEeecCCCceEEEEe--c-CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC
Confidence 77765554 4455555555555544 2 444444444 258899999987653 3333333 4467788888 66
Q ss_pred CEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEe----CCCcEEEEEcCCCee
Q 001386 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQL 612 (1088)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~~ 612 (1088)
..+++... ++...|.+++.. +...+.+..+. ...+..+.++|+++.++... ..++|++||+.+++.
T Consensus 331 ~lv~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 331 HLSLEYLK--DATSEVRVATLK-GKPVRTVQLPG--VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEEE--TTEEEEEEEETT-CCEEEECCCSS--SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEEEE--CCEEEEEEEeCC-CCeeEEecCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 66666554 334556666754 55555555442 25677788899998777433 347899999988774
No 201
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.53 E-value=2e-12 Score=139.26 Aligned_cols=238 Identities=11% Similarity=0.068 Sum_probs=168.5
Q ss_pred ecCCCCCeEEEEECCCCC-EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEE
Q 001386 392 VRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1088)
Q Consensus 392 ~~~h~~~V~~l~~s~dg~-~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vw 470 (1088)
+..+.....+++|+|+|+ +++++..++.|..||..++ .. .+..+...+.+++++++|+ ++++...++.|.+|
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ 95 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence 445667788999999998 7778888999999999886 33 4556778899999999998 67777667899999
Q ss_pred eCCCCceeEEeccC----CccEEEEeeeeeCCceEEEEEec-----------------CCeEEEEECCCCCceEEecCCC
Q 001386 471 DAVTGSRTYSFEGH----GAPVYSLCPHAKENIHFIFSISV-----------------DGKIKAWLYDSLGARVDYDAPG 529 (1088)
Q Consensus 471 d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~~~~~~ 529 (1088)
|..+|+........ ...+..+++ +++|.++++.+. .+.|..++.. .....+....
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~--d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~ 171 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCL--APDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDR 171 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEE--CTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCC
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEE--CCCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCC
Confidence 99888865443221 123456666 557778877321 2345555444 3344444555
Q ss_pred CceEEEEEccCCCEEEEEeeCCCCceeEEEEeCC-CCce---eEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEE
Q 001386 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 605 (1088)
Q Consensus 530 ~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~-~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iw 605 (1088)
.....++|+|+|+.+++.. ..+.|++|++. +++. ...+.. ....+..++++++|+.+++. ++.|.+|
T Consensus 172 ~~~~gi~~s~dg~~lv~~~----~~~~i~~~~~~~~g~~~~~~~~~~~---~~~~p~~i~~d~~G~l~v~~--~~~v~~~ 242 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDT----GDNATHRYCLNARGETEYQGVHFTV---EPGKTDGLRVDAGGLIWASA--GDGVHVL 242 (296)
T ss_dssp SSEEEEEECTTSCEEEEET----TTTEEEEEEECSSSCEEEEEEEECC---SSSCCCSEEEBTTSCEEEEE--TTEEEEE
T ss_pred CCCccEEECCCCCEEEEeC----CCCeEEEEEECCCCcCcCCCeEeeC---CCCCCCeEEECCCCCEEEEc--CCeEEEE
Confidence 5678999999999994432 24569999986 5554 333322 23556789999999866655 7899999
Q ss_pred EcCCCeeeEEEeCCCCCCCCceEEE-ecCCCEEEEEeCCCcEEEEeCCCC
Q 001386 606 DMNKVQLLTTIDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPES 654 (1088)
Q Consensus 606 d~~~~~~~~~~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1088)
+.. ++.+..+..+.. +.+++| +|+++.|++++.++ +.-++..+.
T Consensus 243 ~~~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 243 TPD-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp CTT-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred CCC-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence 986 777777775543 788999 58999898888764 444455543
No 202
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.52 E-value=1.6e-12 Score=137.93 Aligned_cols=239 Identities=11% Similarity=0.026 Sum_probs=167.1
Q ss_pred CeeEEEEecCCCEEE-EEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeee
Q 001386 800 AVPCFALSKNDAYLF-SAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 877 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~-~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~ 877 (1088)
...+++++++|++++ +.. ++.|.+||..+.........+...+.++++++ +++++++.. ++.|.+||..+......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 678999999999777 433 68899999766543322223335678999999 777666555 88999999876544322
Q ss_pred eccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCCeEE
Q 001386 878 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLA 956 (1088)
Q Consensus 878 l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~ 956 (1088)
.......+.+++++++|+++++...++.|.+|+..+..... ....+ . ..+..++++++|+++++. .++.|.
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~----~~~~~-~---~~p~~i~~~~~g~l~v~~~~~~~i~ 174 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV----LPFTG-L---NDPDGVAVDNSGNVYVTDTDNNRVV 174 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE----CCCCS-C---CSCCCEEECTTCCEEEEEGGGTEEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe----ecccc-C---CCceeEEEeCCCCEEEEECCCCEEE
Confidence 22233568999999999988887778889999765532111 11111 1 246789999999977775 467999
Q ss_pred EEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECC
Q 001386 957 IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHP 1036 (1088)
Q Consensus 957 vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 1036 (1088)
+||..++..... ...+...+..++++++|..+++...++.|.+|+..+..... .. .. ....+.+++++|
T Consensus 175 ~~~~~~~~~~~~-~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~------~~---~~~~p~~i~~~~ 243 (270)
T 1rwi_B 175 KLEAESNNQVVL-PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP------FT---GLNTPLAVAVDS 243 (270)
T ss_dssp EECTTTCCEEEC-CCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC------CC---SCSCEEEEEECT
T ss_pred EEecCCCceEee-cccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec------cC---CCCCceeEEECC
Confidence 999887665433 22334678999999999777777778899999987654332 11 00 113467899999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 1037 LKPTQFAVGLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 1037 ~d~~~l~~~~~dg~v~~w~l~~~~ 1060 (1088)
+|+++++...++.|.++++...+
T Consensus 244 -~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 244 -DRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp -TCCEEEEEGGGTEEEEECCCGGG
T ss_pred -CCCEEEEECCCCEEEEEcCCCcc
Confidence 78999999999999999997654
No 203
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.50 E-value=6e-08 Score=119.53 Aligned_cols=555 Identities=12% Similarity=0.039 Sum_probs=317.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEec-------cCCCCEEEEEecCCCCcEEEEEEeCCCcEE
Q 001386 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-------AHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1088)
Q Consensus 396 ~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~-------~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~ 468 (1088)
...|.+|.-.++|. |-.|+.+| +..||-.. ++...... -....|.++...++|. .|..++.++-+.
T Consensus 18 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~---f~~~~~~~~~~~~~~l~~n~I~~i~~d~~g~--~lWigt~~~Gl~ 90 (781)
T 3v9f_A 18 NNYVLSITQDKQGF-LWFATEEG-LNKFDGTR---FITYYKEEQSSSVQSITGNELNEVYTDPVQP--VIWIATQRAGLN 90 (781)
T ss_dssp CSBEEEEEECTTSC-EEEEESSC-EEEECSSS---EEEECCCSSCSSSCCCSCSCEEEEEECSSSS--EEEEEESSSCEE
T ss_pred cCEeEEEEECCCCC-EEEccCCc-CccccCCc---eEEEEcCCCCCccccccccccceEEEcCCCC--EEEEEeCCCCcc
Confidence 46899999988874 66777888 67777432 22111100 1124589998888776 255566665699
Q ss_pred EEeCCCCceeEEe-c---c---CCccEEEEeeeeeC--CceEEEEEecCCeEEEEECCCCCceEEec-----CCCCceEE
Q 001386 469 VWDAVTGSRTYSF-E---G---HGAPVYSLCPHAKE--NIHFIFSISVDGKIKAWLYDSLGARVDYD-----APGLGCTR 534 (1088)
Q Consensus 469 vwd~~~~~~~~~~-~---~---~~~~v~~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~ 534 (1088)
.||..+++..... . . ....|.++.. +. ++ .|..++.++.|..+|..+........ .....|.+
T Consensus 91 ~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~--d~~~~g-~lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~ 167 (781)
T 3v9f_A 91 AYNYETQSFSVYQYNPEDPQSLITNDVTHITS--SVQAGK-GLWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWT 167 (781)
T ss_dssp EEETTTTEEEEECCCTTCSSSCSCSCEEEEEE--CSSTTS-EEEEEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEE
T ss_pred eECCCCCeEEeeccccCCCCCcccCcceEEEe--cCccCC-CEEEEECCCCeeEEECCCCeEEeeccCcccCCCccceEE
Confidence 9998877654321 1 0 1235777765 33 44 45556655568888876554332211 12345788
Q ss_pred EEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEecc----ccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 001386 535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1088)
Q Consensus 535 ~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1088)
+...++|...+... ..-|..+|..+++........ ......|.++...+++...+ ++.+ .+.+||..++
T Consensus 168 i~~d~~g~lwigt~-----~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~ 240 (781)
T 3v9f_A 168 ATEAEDGKLYIGHV-----EGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNANTE 240 (781)
T ss_dssp EEEEETTEEEEEET-----TTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEE-EETT-EEEEEETTTT
T ss_pred EEECCCCCEEEEec-----CCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEE-EeCC-cHheECCCCC
Confidence 88888887666432 112888998877653321110 01125688888888776554 4555 6899998776
Q ss_pred eeeEEEeCC-----CCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccC
Q 001386 611 QLLTTIDAG-----GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIAN 685 (1088)
Q Consensus 611 ~~~~~~~~~-----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~ 685 (1088)
+........ -....|.++...++|. |.+|+..+-|.+++..+..........-..+ .
T Consensus 241 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~-----~------------ 302 (781)
T 3v9f_A 241 TFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFI-----R------------ 302 (781)
T ss_dssp EEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEE-----C------------
T ss_pred cEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccc-----c------------
Confidence 544322111 1123577888877775 4556665667888876543211000000000 0
Q ss_pred CceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccC
Q 001386 686 GSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR 765 (1088)
Q Consensus 686 ~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~ 765 (1088)
+ . ..+.......|.++....+|. +-.++.++-+..++...
T Consensus 303 ----------------------------~-----~------~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~ 342 (781)
T 3v9f_A 303 ----------------------------E-----G------DNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAP 342 (781)
T ss_dssp ----------------------------B-----C------SSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSC
T ss_pred ----------------------------C-----C------CCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCC
Confidence 0 0 000011345688888888887 55555555566665432
Q ss_pred CCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEe---cCCCCCe
Q 001386 766 NDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI---MPPSPTA 842 (1088)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~---~~~~~~i 842 (1088)
... +.+...... ..........|.+++..++|.+.+...++.|..|+..++....-. ......|
T Consensus 343 ~~~--------~~~~~~~~~-----~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v 409 (781)
T 3v9f_A 343 PTF--------HTWSYSPTQ-----MNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSV 409 (781)
T ss_dssp CSC--------EEEC----C-----CCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBE
T ss_pred Ccc--------eeeccCccc-----cccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcce
Confidence 211 111100000 000011345789999999888776655777999998765432211 1234678
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeec--cccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 001386 843 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE--GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR 920 (1088)
Q Consensus 843 ~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~--~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~ 920 (1088)
.+++..+ ++.+. +|+.++-+..++..+++...... .....|.++...++|.+.+. +.. -|..+|..+++....
T Consensus 410 ~~i~~d~-~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~~-Gl~~~~~~~~~~~~~- 484 (781)
T 3v9f_A 410 LCSLKDS-EGNLW-FGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIG-THA-GVFVIDLASKKVIHH- 484 (781)
T ss_dssp EEEEECT-TSCEE-EEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEE-ETT-EEEEEESSSSSCCEE-
T ss_pred EEEEECC-CCCEE-EEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEE-ECC-ceEEEeCCCCeEEec-
Confidence 9999887 56544 47777779999988776533221 13467999999888876654 444 488999887553221
Q ss_pred eeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecC---CCcCEEEEEEeeCCCEEEEEeCCCc
Q 001386 921 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGT 997 (1088)
Q Consensus 921 ~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~s~s~dg~ 997 (1088)
............|.++...++|++.+.+.++.+..||..+++... +... ....|.++...++|...++ +.+|.
T Consensus 485 --~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Gl 560 (781)
T 3v9f_A 485 --YDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRK-FNQYEGFCSNTINQIYRSSKGQMWLA-TGEGL 560 (781)
T ss_dssp --ECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEE-ECTTTTCSCSCEEEEEECTTSCEEEE-ETTEE
T ss_pred --ccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEE-ccCCCCCCCCeeEEEEECCCCCEEEE-ECCCc
Confidence 111111111246899999999998888776668889987765432 2211 1467899999889886664 45665
Q ss_pred EEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001386 998 LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1057 (1088)
Q Consensus 998 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~ 1057 (1088)
|..||..++... .+.....++.. .+ .++..++ +|.+.++ +..| |..++..
T Consensus 561 v~~~d~~~~~~~-~~~~~~gl~~~----~i--~~i~~d~-~g~lW~~-t~~G-l~~~~~~ 610 (781)
T 3v9f_A 561 VCFPSARNFDYQ-VFQRKEGLPNT----HI--RAISEDK-NGNIWAS-TNTG-ISCYITS 610 (781)
T ss_dssp EEESCTTTCCCE-EECGGGTCSCC----CC--CEEEECS-SSCEEEE-CSSC-EEEEETT
T ss_pred eEEECCCCCcEE-EccccCCCCCc----eE--EEEEECC-CCCEEEE-cCCc-eEEEECC
Confidence 588998877643 22222222221 22 4566776 6665554 4444 6666664
No 204
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.50 E-value=3.2e-12 Score=135.60 Aligned_cols=241 Identities=8% Similarity=-0.045 Sum_probs=166.1
Q ss_pred CceeeeecCCCCeEEE-EEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE
Q 001386 336 SPMSMDFHPVQHTLLL-VGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla-~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~ 414 (1088)
...+++++|+|+ +++ +...++.|.+||..++..... ...+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EEC-------------------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceE-------------------eeCCcCCcceeEECCCCCEEEEc
Confidence 678999999998 666 556778999999766543211 11233567889999999966665
Q ss_pred eCCCEEEEEEccCCCcccceeEec-cCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEee
Q 001386 415 YSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493 (1088)
Q Consensus 415 ~~dg~i~vwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 493 (1088)
. ++.|.+||..++... .+. .....+..+++.++|+ ++++...++.|.+||..+.............+..+++
T Consensus 85 ~-~~~i~~~d~~~~~~~----~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQT----VLPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCE----ECCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEe----eeecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 889999998765422 122 2335789999999998 6777777889999986655443322223335667777
Q ss_pred eeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEec
Q 001386 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 573 (1088)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 573 (1088)
+++|.++++...++.|.+||................+..++++++|...++... .+.|.+|+..+.........
T Consensus 158 --~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~----~~~v~~~~~~~~~~~~~~~~ 231 (270)
T 1rwi_B 158 --DNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTSTVLPFT 231 (270)
T ss_dssp --CTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TSCEEEECTTCSCCEECCCC
T ss_pred --eCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECC----CCcEEEEcCCCCcceeeccC
Confidence 446677777777899999998776544433333356889999999966655432 44599999876544332212
Q ss_pred cccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCee
Q 001386 574 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612 (1088)
Q Consensus 574 ~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 612 (1088)
. ...+.+++++++|+.+++...++.|++++....+.
T Consensus 232 ~---~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 232 G---LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp S---CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred C---CCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 2 24688999999999888888899999999876543
No 205
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.49 E-value=1.8e-12 Score=158.80 Aligned_cols=247 Identities=9% Similarity=0.050 Sum_probs=164.1
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCC-----CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCc--
Q 001386 394 DPGVSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-- 466 (1088)
Q Consensus 394 ~h~~~V~~l~~s~dg~~las~~~d-----g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~-- 466 (1088)
+|...+..++|||||++||.++.+ ..|++||+.+|+.+.. ..+...+..++|+|| + .|+.++.|+.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCccc
Confidence 344578899999999999988654 4699999999975431 112222357899999 8 5555555543
Q ss_pred ------------EEEEeCCCCce--eEEec--cCCccEEEEeeeeeCCceEEEEEecCC-----eEEEEECCCC--CceE
Q 001386 467 ------------IKVWDAVTGSR--TYSFE--GHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSL--GARV 523 (1088)
Q Consensus 467 ------------i~vwd~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~--~~~~ 523 (1088)
|++|++.++.. ...+. .+...+..+.| ++||++|+..+.++ .|.+||+.++ ....
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASV--SSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEE--CCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 89999987763 22333 33335777777 66888888877654 7999999876 3133
Q ss_pred EecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC--ceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCc
Q 001386 524 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 601 (1088)
Q Consensus 524 ~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~ 601 (1088)
.+..+...+... ++|+|+.|+..+..+.....|++||+.++ .....+..+. ..+..+.+. ++..+++...|+.
T Consensus 311 ~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~ 385 (741)
T 1yr2_A 311 ALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESK---DNLESVGIA-GNRLFASYIHDAK 385 (741)
T ss_dssp EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCS---SEEEEEEEE-BTEEEEEEEETTE
T ss_pred EecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCC---CeEEEEEEE-CCEEEEEEEECCE
Confidence 343443344444 35999999988765444678999999885 3333443333 456777777 5567777888988
Q ss_pred EEEEEcC-CCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC----CCcEEEEeCCCCC
Q 001386 602 IKIWDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 655 (1088)
Q Consensus 602 i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iwd~~~~~ 655 (1088)
.++|.+. +++....+..+. ...+..++++|+++.++.... .++|++||+.+++
T Consensus 386 ~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 386 SQVLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 7777554 456566665322 234677889999876664332 4789999998764
No 206
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.49 E-value=9.4e-12 Score=137.36 Aligned_cols=205 Identities=14% Similarity=0.086 Sum_probs=143.6
Q ss_pred eEEEEecCCCEEEEEe---CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeee-
Q 001386 802 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK- 877 (1088)
Q Consensus 802 ~~~~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~- 877 (1088)
..++++|||++++++. ++.|.+.|+.+++.+.++..... ....|.+.+.+++.+.||.+.+.+..+++....
T Consensus 180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~ 255 (426)
T 3c75_H 180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTN 255 (426)
T ss_dssp GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence 3478899999888875 46899999999999988874321 233443446666777888888888866655422
Q ss_pred ---eccccCCe-eEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCc-c---CCCCeEEEEEcCCCCEEEE
Q 001386 878 ---LEGHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM-T---LAPSETHIQFHKDQTRFLL 949 (1088)
Q Consensus 878 ---l~~h~~~V-~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-~---~~~~v~~~~fs~dg~~l~~ 949 (1088)
+.....++ ..+.|++++..++..+..+.|.+.|+.+........+....... . .......++|+||++++.+
T Consensus 256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV 335 (426)
T 3c75_H 256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL 335 (426)
T ss_dssp CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence 22112222 23578999998888888899999999765432222222110000 0 0012234799999998777
Q ss_pred Ee-----------CCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCC-EEEEEe-CCCcEEEEEcCCCceEEEe
Q 001386 950 VH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRI 1012 (1088)
Q Consensus 950 ~~-----------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~s~s-~dg~v~vwd~~~~~~~~~~ 1012 (1088)
.. ++.|.++|+.+++.+..+..+ .....++|+|||+ +++++. .++.|.|+|+.+++.+.++
T Consensus 336 a~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 336 LVDQRDEWKHKAASRFVVVLNAETGERINKIELG--HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EecccccccccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 42 347999999999999887643 3588999999999 888887 5899999999999999887
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.46 E-value=2.4e-10 Score=123.20 Aligned_cols=279 Identities=10% Similarity=0.032 Sum_probs=191.0
Q ss_pred cCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEE
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 411 (1088)
.....+.+++++++|+ +.++...++.|.+||.. ++.... . +..+...+.++++.++|.+.
T Consensus 17 ~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~-~-----------------~~~~~~~~~~i~~~~~g~l~ 76 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEF-E-----------------VPTPDAKVMCLIVSSLGDIW 76 (300)
T ss_dssp STTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEE-E-----------------CSSTTCCEEEEEECTTSCEE
T ss_pred CCCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEE-E-----------------CCCCCCcceeEEECCCCCEE
Confidence 3345889999999998 66666677999999987 553321 0 22344679999999999988
Q ss_pred EEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE-EeccCCccEEE
Q 001386 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYS 490 (1088)
Q Consensus 412 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~-~~~~~~~~v~~ 490 (1088)
++...++.|..||.. ++. .. ..+......+..+++.++|+ ++++...++.|..+|.. ++... .+......+..
T Consensus 77 v~~~~~~~v~~~d~~-g~~-~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~ 150 (300)
T 2qc5_A 77 FTENGANKIGKLSKK-GGF-TE-YPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAF 150 (300)
T ss_dssp EEETTTTEEEEECTT-SCE-EE-EECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEE
T ss_pred EEecCCCeEEEECCC-CCe-EE-ecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCcee
Confidence 877678889999988 543 21 12333446789999999998 66766667899999987 66542 23334456778
Q ss_pred EeeeeeCCceEEEEEecCCeEEEEECCCCCceE-EecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeE
Q 001386 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1088)
Q Consensus 491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1088)
+++ ++++.+.++...++.|..+|. .+.... ........+..++++++|+..++... .+.|..+|. +++...
T Consensus 151 i~~--d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~-~g~~~~ 222 (300)
T 2qc5_A 151 ITL--GSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM----GNKIGRITT-TGEISE 222 (300)
T ss_dssp EEE--CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEE
T ss_pred EEE--CCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC----CCEEEEEcC-CCcEEE
Confidence 877 456676666666789999988 333322 22233456889999999976665432 445999998 555443
Q ss_pred E-EeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEE
Q 001386 570 T-YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1088)
Q Consensus 570 ~-~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1088)
. .... ...+.++++.++|+..++...++.|..|+. +++.. .+........+.+++++++|++.++.. . .|..
T Consensus 223 ~~~~~~---~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~ 295 (300)
T 2qc5_A 223 YDIPTP---NARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGK 295 (300)
T ss_dssp EECSST---TCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEE
T ss_pred EECCCC---CCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEE
Confidence 2 2222 256889999999986666666789999998 45433 333332334578999999998666554 4 6666
Q ss_pred EeC
Q 001386 649 LET 651 (1088)
Q Consensus 649 wd~ 651 (1088)
++.
T Consensus 296 ~~p 298 (300)
T 2qc5_A 296 LNL 298 (300)
T ss_dssp EEE
T ss_pred eCC
Confidence 654
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.46 E-value=3.3e-10 Score=122.13 Aligned_cols=277 Identities=9% Similarity=0.046 Sum_probs=190.6
Q ss_pred ccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCE
Q 001386 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 812 (1088)
Q Consensus 733 ~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 812 (1088)
....+.++++.++|...++...++.+.+|+.. +. +.....+ .....+.+++++++|.+
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~-------------------~~~~~~~--~~~~~~~~i~~~~~g~l 75 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GR-------------------IKEFEVP--TPDAKVMCLIVSSLGDI 75 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-------------------EEEEECS--STTCCEEEEEECTTSCE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cc-------------------eEEEECC--CCCCcceeEEECCCCCE
Confidence 34578899999999977777778888888744 21 1111111 13457889999999998
Q ss_pred EEEEe-CCcEEEEEcCCceeEE-EecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee-eeccccCCeeEEE
Q 001386 813 LFSAS-GGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-KLEGHSKRVTGLV 889 (1088)
Q Consensus 813 l~~~~-dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~-~l~~h~~~V~~l~ 889 (1088)
+++.. ++.|..||.. ++... .+......+.++++.+ +++++++...++.|..||.. ++... .+......+.+++
T Consensus 76 ~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~ 152 (300)
T 2qc5_A 76 WFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFIT 152 (300)
T ss_dssp EEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEE
T ss_pred EEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEE
Confidence 87766 6789999988 55432 2222446789999999 78888877778899999987 65442 2333456789999
Q ss_pred ECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCcceeeee
Q 001386 890 FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH-ETHLAIYEAEELTCLKQ 968 (1088)
Q Consensus 890 ~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~-d~~i~vwd~~~~~~~~~ 968 (1088)
+.++|++.++...++.|..+|. +++... +..... . ..+..++++++|++.++.. .+.|.+||. +++....
T Consensus 153 ~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~~~-~---~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~ 223 (300)
T 2qc5_A 153 LGSDNALWFTENQNNSIGRITN-TGKLEE---YPLPTN-A---AAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY 223 (300)
T ss_dssp ECTTSSEEEEETTTTEEEEECT-TCCEEE---EECSST-T---CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE
T ss_pred ECCCCCEEEEecCCCeEEEECC-CCcEEE---eeCCCC-C---CCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE
Confidence 9999997777766788999998 443221 221111 1 2578999999998887754 567999998 5554443
Q ss_pred eecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCC
Q 001386 969 WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN 1048 (1088)
Q Consensus 969 ~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~d 1048 (1088)
....+...+.+++++++|+..++...++.|..|+. ++... .+.. +.. ...+.+++++| +|+++++.. .
T Consensus 224 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~----~~~----~~~~~~i~~~~-~g~l~v~~~-~ 291 (300)
T 2qc5_A 224 DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQL----QTE----NAEPHGITFGK-DGSVWFALK-C 291 (300)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEEC----CST----TCCCCCEEECT-TSCEEEECS-S
T ss_pred ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEEC----Ccc----CCccceeEeCC-CCCEEEEcc-C
Confidence 33345677899999999997776666789999998 56543 2211 100 12355688898 677666554 4
Q ss_pred CcEEEEeC
Q 001386 1049 GEVYVIEP 1056 (1088)
Q Consensus 1049 g~v~~w~l 1056 (1088)
.|..+++
T Consensus 292 -~i~~~~p 298 (300)
T 2qc5_A 292 -KIGKLNL 298 (300)
T ss_dssp -EEEEEEE
T ss_pred -ceEEeCC
Confidence 7777765
No 209
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.43 E-value=1e-11 Score=137.01 Aligned_cols=281 Identities=11% Similarity=0.088 Sum_probs=191.5
Q ss_pred CCCCeEEEEEccc----CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe----
Q 001386 344 PVQHTLLLVGTNV----GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY---- 415 (1088)
Q Consensus 344 pdg~~lla~g~~d----g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~---- 415 (1088)
|++++++++...+ ++|.+.|..+++.+.+... -..+ .+++||||++|.++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v-------------------G~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG-------------------GFLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE-------------------CSSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC-------------------CCCC--ceEECCCCCEEEEEecccc
Confidence 5677666666544 7999999999998865331 1234 799999999998876
Q ss_pred ------CCCEEEEEEccCCCcccceeEec--c---CCCCEEEEEecCCCCcEEEEEEe--CCCcEEEEeCCCCceeEEec
Q 001386 416 ------SKHIVQLYAYHGGSDARQQLEID--A---HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYSFE 482 (1088)
Q Consensus 416 ------~dg~i~vwd~~~~~~~~~~~~~~--~---h~~~v~~~~~s~d~~~l~l~s~s--~d~~i~vwd~~~~~~~~~~~ 482 (1088)
.++.|.++|..+++.+..+. +. . .......++|+|||++ ++.+. .++.|.+.|+.+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~--lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKN--LLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 36789999999988766432 21 0 1123457899999994 55444 36789999999999998886
Q ss_pred cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEE----ecCCCCc-eEEEEEccCCCEEEEEeeCCCCceeE
Q 001386 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD----YDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFL 557 (1088)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~-v~~~~~s~~g~~l~~~~~~~~~~~~i 557 (1088)
.... ....+... ..+++.+.||.+.+.+....+.... +.....+ ...+.+++++..++.... .+.+
T Consensus 218 v~g~----~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V 288 (426)
T 3c75_H 218 VPDC----YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI 288 (426)
T ss_dssp CCSE----EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred cCCc----eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence 4321 22223322 4667777889888888854443321 1111122 123567999988877753 3469
Q ss_pred EEEeCCCCcee--EEEecc-----c--cccccEEEEEEeCCCCEEEEEeC----------CCcEEEEEcCCCeeeEEEeC
Q 001386 558 VEWNESEGAIK--RTYQGL-----Q--LQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLLTTIDA 618 (1088)
Q Consensus 558 ~iwd~~~~~~~--~~~~~~-----~--~~~~~v~~~~~~~~~~~l~~~s~----------dg~i~iwd~~~~~~~~~~~~ 618 (1088)
++.|...+... ..+... . ........++++|+++++++... ++.|.+.|..+.+.+..+..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 99998655422 111100 0 00011123689999998887642 35799999999999999876
Q ss_pred CCCCCCCceEEEecCCC-EEEEEe-CCCcEEEEeCCCCCccccc
Q 001386 619 GGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDAA 660 (1088)
Q Consensus 619 ~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~ 660 (1088)
... ...++|+|||+ ++++.. .++.|.++|..+++.+..+
T Consensus 369 g~~---P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 369 GHE---IDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEE---ECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCC---cCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 542 57899999999 888888 5899999999999887664
No 210
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.42 E-value=8e-12 Score=153.06 Aligned_cols=248 Identities=10% Similarity=0.004 Sum_probs=158.1
Q ss_pred cCCCCceeeeecCCCCeEEEEEccc----CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVGTNV----GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g~~d----g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
+|...+..++|||||++++.+.+.+ .+|++||+.+|+.+.. . . +...+..++|+||
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~-----------------~--~~~~~~~~~wspD 219 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-E-----------------L--KWVKFSGLAWLGN 219 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-E-----------------E--EEEESCCCEESTT
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-c-----------------C--CCceeccEEEECC
Confidence 3444788999999999644443333 3599999999986542 0 0 1122356899999
Q ss_pred CCEEEEEeCCCE--------------EEEEEccCCCccc-ceeEeccCCCCEEEEEecCCCCcEEEEEEeCC-----CcE
Q 001386 408 GSLLGVAYSKHI--------------VQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTI 467 (1088)
Q Consensus 408 g~~las~~~dg~--------------i~vwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d-----~~i 467 (1088)
+.|+.++.++. |++|++.++.... .......+...+..+.|||||+. |+..+.+ ..|
T Consensus 220 -~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~l 296 (741)
T 1yr2_A 220 -DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNTV 296 (741)
T ss_dssp -SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCEE
T ss_pred -CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcceE
Confidence 99999876553 8999998775321 11122234346889999999994 4444433 489
Q ss_pred EEEeCCCC--ceeEEeccCCccEEEEeeeeeCCceEEEEEec----CCeEEEEECCCC--CceEEecCCCCceEEEEEcc
Q 001386 468 KVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV----DGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSA 539 (1088)
Q Consensus 468 ~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~ 539 (1088)
.+||+.++ ++...+..+...+.... . ++|..|+..+. ++.|.+||+++. .....+..+...+..++++
T Consensus 297 ~~~d~~~~~~~~~~~l~~~~~~~~~~~-~--~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~- 372 (741)
T 1yr2_A 297 HVARVTNGKIGPVTALIPDLKAQWDFV-D--GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA- 372 (741)
T ss_dssp EEEEEETTEECCCEEEECSSSSCEEEE-E--EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-
T ss_pred EEEECCCCCCcccEEecCCCCceEEEE-e--ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-
Confidence 99999887 42455655554444443 2 34556666655 345999998874 2233344444456677776
Q ss_pred CCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEe----CCCcEEEEEcCCCe
Q 001386 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQ 611 (1088)
Q Consensus 540 ~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~ 611 (1088)
++..+++... ++...|++++.. +...+.+..+. ...+..+.++|+++.++... ..++|++||+.+++
T Consensus 373 ~~~lv~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 373 GNRLFASYIH--DAKSQVLAFDLD-GKPAGAVSLPG--IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp BTEEEEEEEE--TTEEEEEEEETT-SCEEEECBCSS--SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CCEEEEEEEE--CCEEEEEEEeCC-CCceeeccCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 4455555543 345567777764 55555555432 26788899999988666432 34789999998887
No 211
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.38 E-value=1.4e-10 Score=126.00 Aligned_cols=251 Identities=13% Similarity=0.104 Sum_probs=164.9
Q ss_pred cccCCCCceeeeecCCCCeEEEE-------EcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEE
Q 001386 330 LIEGSSSPMSMDFHPVQHTLLLV-------GTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1088)
Q Consensus 330 l~~h~~~V~~v~~spdg~~lla~-------g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 402 (1088)
+.+.-....+++|+++|. ++++ +..++.|.+||..+++...... ....++...+.++
T Consensus 13 ~~~~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~---------------~~~~~~~~~~~~i 76 (314)
T 1pjx_A 13 VTEDIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK---------------PEVNGYGGIPAGC 76 (314)
T ss_dssp EECCCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEEC---------------CEETTEECCEEEE
T ss_pred hhccCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe---------------cccCCCCCCCceE
Confidence 344444788999999998 6666 5667899999998887542100 0012244679999
Q ss_pred EECCC-CCEEEEEeCCCEEEEEEccCCCcccc-eeEecc-CCCCEEEEEecCCCCcEEEEEEeCC---------------
Q 001386 403 VWSPD-GSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDA-HVGNVNDLAFSAPCKQISVITCGDD--------------- 464 (1088)
Q Consensus 403 ~~s~d-g~~las~~~dg~i~vwd~~~~~~~~~-~~~~~~-h~~~v~~~~~s~d~~~l~l~s~s~d--------------- 464 (1088)
+++++ |+++++. ..+.|.+||.. ++.... .....+ ....+.++++.++|+ +.++...+
T Consensus 77 ~~~~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~ 152 (314)
T 1pjx_A 77 QCDRDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKF 152 (314)
T ss_dssp EECSSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSC
T ss_pred EEecCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCC
Confidence 99999 7655554 44479999998 653221 100011 124588999999998 56665544
Q ss_pred CcEEEEeCCCCceeEEeccCCccEEEEeee--eeCCceEEE-EEecCCeEEEEECC-CCCc-----eEEecCCC-CceEE
Q 001386 465 KTIKVWDAVTGSRTYSFEGHGAPVYSLCPH--AKENIHFIF-SISVDGKIKAWLYD-SLGA-----RVDYDAPG-LGCTR 534 (1088)
Q Consensus 465 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~l~-s~~~dg~i~iwd~~-~~~~-----~~~~~~~~-~~v~~ 534 (1088)
+.|..||.. ++..... .+......+++. .+++++.++ +...++.|.+||++ .+.. ...+..+. .....
T Consensus 153 ~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~ 230 (314)
T 1pjx_A 153 GSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADG 230 (314)
T ss_dssp EEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEE
T ss_pred CeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCc
Confidence 567778765 5544332 233345677774 115665554 44567999999986 2221 11222222 45788
Q ss_pred EEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEE-eCCCcEEEEEcCC
Q 001386 535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNK 609 (1088)
Q Consensus 535 ~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~ 609 (1088)
++++++|+..++... .+.|.+||..+++.+..+..+. ..+.+++|+++++.|+++ ..++.|..|++..
T Consensus 231 i~~d~~G~l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~---~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 231 MDFDEDNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPF---EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEBTTCCEEEEEET----TTEEEEECTTCBSCSEEEECSS---SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred eEECCCCCEEEEEcC----CCEEEEEcCCCCcEeEEEeCCC---CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999999988777543 3459999998788777776654 678999999999966554 4568899998764
No 212
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.36 E-value=1.4e-10 Score=126.07 Aligned_cols=245 Identities=9% Similarity=0.056 Sum_probs=165.3
Q ss_pred cEEEEEEecCCceEEE-------eccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccC-CCCCCCCeeEEEEe
Q 001386 736 KISRLTYNNGGQAIFA-------LASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTT-DSNSQEAVPCFALS 807 (1088)
Q Consensus 736 ~i~~~~~s~~g~~l~~-------~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s 807 (1088)
...+++|+++|..+++ ...++.|.+|+...+.. . ....+ ..++...+.+++++
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~------------------~-~~~~~~~~~~~~~~~~i~~~ 79 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK------------------T-VICKPEVNGYGGIPAGCQCD 79 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE------------------E-EEECCEETTEECCEEEEEEC
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE------------------E-EEEecccCCCCCCCceEEEe
Confidence 4578899999987777 56678888887543321 1 10000 00133568899999
Q ss_pred cC-CCEEEEEeCCcEEEEEcCCceeEEE-ecC----CCCCeEEEEEcCCCCcEEEEEeCC---------------CeEEE
Q 001386 808 KN-DAYLFSASGGVISLYIVMTFKTILT-IMP----PSPTATSLAFNPHDNNVIAIGMDD---------------STILI 866 (1088)
Q Consensus 808 ~d-g~~l~~~~dg~i~iwd~~~~~~~~~-~~~----~~~~i~~l~~sp~d~~~lasg~~d---------------g~i~l 866 (1088)
++ |+++++...+.|.+||.. ++.... ... +...+.++++++ +++++++...+ +.|..
T Consensus 80 ~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~ 157 (314)
T 1pjx_A 80 RDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYC 157 (314)
T ss_dssp SSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred cCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEE
Confidence 99 776666656689999998 665433 221 123578999999 78877776655 57888
Q ss_pred EEcCCceeeeeeccccCCeeEEEEC----CCCCEEEEE-eCCCcEEEEEcC-CCceeeeeeeecCCCCccCCCCeEEEEE
Q 001386 867 YNARSSEVISKLEGHSKRVTGLVFS----DALNILVSS-GGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQF 940 (1088)
Q Consensus 867 wd~~~~~~~~~l~~h~~~V~~l~~s----~dg~~las~-s~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~f 940 (1088)
|+.. ++... +..+......++|+ |+++.|..+ ..++.|.+||+. ++.......+....++.. ..+..+++
T Consensus 158 ~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~--~~p~~i~~ 233 (314)
T 1pjx_A 158 FTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE--GGADGMDF 233 (314)
T ss_dssp ECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS--CEEEEEEE
T ss_pred ECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC--CCCCceEE
Confidence 8766 55433 33344557889999 999765544 567899999987 443322223333332210 14678999
Q ss_pred cCCCCEEEEE-eCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEE-eCCCcEEEEEcCCC
Q 001386 941 HKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTS-FVDGTLSIHEASNL 1006 (1088)
Q Consensus 941 s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~-s~dg~v~vwd~~~~ 1006 (1088)
+++|+++++. .++.|.+||..+++.+..+. .+...+.+++|++||+.|+++ ..++.|..|++...
T Consensus 234 d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 234 DEDNNLLVANWGSSHIEVFGPDGGQPKMRIR-CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp BTTCCEEEEEETTTEEEEECTTCBSCSEEEE-CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred CCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe-CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 9999988885 67899999998787766543 455789999999999965544 45688999998753
No 213
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.34 E-value=1.8e-10 Score=125.22 Aligned_cols=174 Identities=9% Similarity=0.065 Sum_probs=136.2
Q ss_pred CCeeEEEEecCCCEEEEEeCCcEEEEEcCCce-----------eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 001386 799 EAVPCFALSKNDAYLFSASGGVISLYIVMTFK-----------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 867 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lw 867 (1088)
..+..+++++...++++|+...+.+|++.+.. ..... .+.. |+.++| |+++|+++ .++.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence 36889999999999999997788889976443 11222 2445 999999 57888888 88999999
Q ss_pred EcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEE
Q 001386 868 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 947 (1088)
Q Consensus 868 d~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l 947 (1088)
|+.+.........|..++.++.+.+.. +++++.||.|.+||++++.... + . ..|++++|||+| ..
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---~------~---~~Vs~v~WSpkG-~~ 176 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---L------A---QNVTSFDVTNSQ-LA 176 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---E------E---ESEEEEEECSSE-EE
T ss_pred EchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---c------c---CCceEEEEcCCc-eE
Confidence 998876666677788889988887653 8889999999999999765321 1 1 259999999999 44
Q ss_pred EEEeCCeEEEEEcCccee--eeeee-----c---CCCcCEEEEEEeeCCCEEEEEe
Q 001386 948 LLVHETHLAIYEAEELTC--LKQWF-----P---ISSVPISQATFSCDCRMVFTSF 993 (1088)
Q Consensus 948 ~~~~d~~i~vwd~~~~~~--~~~~~-----~---~h~~~v~~l~fs~dg~~l~s~s 993 (1088)
+...||++++|+...+++ .+.+. . +|...|.++.|.+++.++++-+
T Consensus 177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 457899999999888775 44431 1 4788999999999999988643
No 214
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.34 E-value=4.1e-10 Score=126.21 Aligned_cols=248 Identities=10% Similarity=-0.005 Sum_probs=165.6
Q ss_pred CCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEEcCCceee
Q 001386 799 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVI 875 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg--~i~lwd~~~~~~~ 875 (1088)
..+..++++++++++++.. ++.|++||..+++....... ..... ++|++ +++.|+++..++ .|.+|+..++...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence 4577899999998766665 58899999998877655544 23333 99999 788888888766 8999998766543
Q ss_pred eee----ccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCC-CEEEE-
Q 001386 876 SKL----EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ-TRFLL- 949 (1088)
Q Consensus 876 ~~l----~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg-~~l~~- 949 (1088)
..+ ..+...+.+++++|++..|..+..++.|+.||..++......... ..+... ..+...++|+|++ .++++
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~-~~g~~~-~~P~~~ia~~p~~g~lyv~d 285 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE-LSGSLG-TNPGPYLIYYFVDSNFYMSD 285 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC-CCSCCC-CSSCCEEEEETTTTEEEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc-ccCCCC-CCccccEEEeCCCCEEEEEe
Confidence 333 224566889999995555555777889999999876522211110 111111 0011289999964 44444
Q ss_pred EeCCeEEEEEcCcceeeeeeecCC---------------CcCEEEEEEeeCCCEEEEEe-CCCcEEEEEcCCCceEEEec
Q 001386 950 VHETHLAIYEAEELTCLKQWFPIS---------------SVPISQATFSCDCRMVFTSF-VDGTLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 950 ~~d~~i~vwd~~~~~~~~~~~~~h---------------~~~v~~l~fs~dg~~l~s~s-~dg~v~vwd~~~~~~~~~~~ 1013 (1088)
...+.|+.|+.... +..+. ++ -.....++++++|.++++-+ .++.|+.|++.+|.......
T Consensus 286 ~~~~~I~~~~~~g~--~~~~~-g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 286 QNLSSVYKITPDGE--CEWFC-GSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp TTTTEEEEECTTCC--EEEEE-ECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEecCCC--EEEEE-eCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeC
Confidence 35678999987643 22211 22 24588999999999777777 78999999988887543332
Q ss_pred cccccCCCCc-----cccccceEEEECCCCCCEEEEEeCCCcEEEEeC
Q 001386 1014 STAYLRPTTS-----CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1056 (1088)
Q Consensus 1014 ~~~~~~~~~~-----~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l 1056 (1088)
... ...... ..--.|..++++| ++.++++-..++.|+.+.+
T Consensus 363 ~~~-~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 363 QVD-VASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CTT-CBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CCC-CCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 100 000000 0113578899999 6888888888889988875
No 215
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.32 E-value=1.5e-10 Score=140.24 Aligned_cols=252 Identities=11% Similarity=0.049 Sum_probs=166.5
Q ss_pred cCCCCceeeeecCCCCeEEEEE----cccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 332 EGSSSPMSMDFHPVQHTLLLVG----TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 332 ~h~~~V~~v~~spdg~~lla~g----~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
+|...+..++|||||++++.+. +...+|+|||+.+|+.+.. . + +......++|+ |
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~--~~~k~~~~~Ws-D 184 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------L--KDVKFSGISWL-G 184 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------E--EEEESCCCEEE-T
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------c--CCceeccEEEe-C
Confidence 4556788999999999644433 3335799999999986542 0 1 11113467899 9
Q ss_pred CCEEEEEeCCC-------------EEEEEEccCCCccc-ceeEecc-CCCCEEEEEecCCCCcEEEEEEe---CCCcEEE
Q 001386 408 GSLLGVAYSKH-------------IVQLYAYHGGSDAR-QQLEIDA-HVGNVNDLAFSAPCKQISVITCG---DDKTIKV 469 (1088)
Q Consensus 408 g~~las~~~dg-------------~i~vwd~~~~~~~~-~~~~~~~-h~~~v~~~~~s~d~~~l~l~s~s---~d~~i~v 469 (1088)
|+.|+.++.+. .|++|++.++.... .+..... |...+..+.|+|||+.+ +++.+ .+..|.+
T Consensus 185 g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~ 263 (693)
T 3iuj_A 185 NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYV 263 (693)
T ss_dssp TTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEE
T ss_pred CCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEE
Confidence 99999998774 39999998765321 1112233 45567899999999963 33333 2358999
Q ss_pred EeCCCCc-eeEEeccCCccEEEEeeeeeCCceEEEEEecC---CeEEEEECCCCCc--eEEecCCCCceEEEEEccCCCE
Q 001386 470 WDAVTGS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRR 543 (1088)
Q Consensus 470 wd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~ 543 (1088)
||+.++. ....+..+....... +.+. ++.+++....+ +.|..+|+.+... ...+..+...+. .|+++++.
T Consensus 264 ~d~~~~~~~~~~l~~~~~~~~~~-~~~~-g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~ 339 (693)
T 3iuj_A 264 KDLSQENAPLLTVQGDLDADVSL-VDNK-GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGY 339 (693)
T ss_dssp EETTSTTCCCEEEECSSSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTE
T ss_pred EECCCCCCceEEEeCCCCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCE
Confidence 9998774 455666666555544 3333 33455555444 6799999987654 234444555554 89999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC----CcEEEEEcCCCeee
Q 001386 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNKVQLL 613 (1088)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d----g~i~iwd~~~~~~~ 613 (1088)
|+..... ++...|++|++.++. .+.+.... ...+..+.++++++.++....+ +.+..||+.+++..
T Consensus 340 lv~~~~~-~g~~~l~~~d~~g~~-~~~l~~p~--~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 340 LFAEYMV-DATARVEQFDYEGKR-VREVALPG--LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEEEEE-TTEEEEEEECTTSCE-EEEECCSS--SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEEEEE-CCeeEEEEEECCCCe-eEEeecCC--CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 8887653 345679999988554 44443222 2467777788888877765544 88999999887643
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.32 E-value=7.4e-10 Score=124.10 Aligned_cols=242 Identities=12% Similarity=0.012 Sum_probs=163.7
Q ss_pred CCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~ 414 (1088)
.....|+|+|+|+ ++++...++.|++||..++..... ... ..... ++|+|+++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 3678999999998 788888889999999988765532 111 22233 9999999999988
Q ss_pred eCCC--EEEEEEccCCCcccceeEecc-CCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE----eccCCcc
Q 001386 415 YSKH--IVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS----FEGHGAP 487 (1088)
Q Consensus 415 ~~dg--~i~vwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~----~~~~~~~ 487 (1088)
..++ .|.+|+..++........+.. +...+.+++++|++.. |+.+..++.|+.||..++..... ..++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 8765 799999887654322211112 4567789999995553 44466788999999987764322 2222222
Q ss_pred E--EEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCC---------------CCceEEEEEccCCCEEEEEeeC
Q 001386 488 V--YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP---------------GLGCTRMAYSANGRRLFSCGTS 550 (1088)
Q Consensus 488 v--~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------------~~~v~~~~~s~~g~~l~~~~~~ 550 (1088)
- ..+++++. ++.++++...++.|+.|+.+.. ...+... -.....++++++|++.++-.
T Consensus 267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-- 341 (409)
T 3hrp_A 267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-- 341 (409)
T ss_dssp SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET--
T ss_pred CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC--
Confidence 2 27888543 4567777778899999987654 2222221 12477899999999555532
Q ss_pred CCCceeEEEEeCCCCceeEEEeccc------------cccccEEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 001386 551 KEGESFLVEWNESEGAIKRTYQGLQ------------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1088)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1088)
.+...|+.|+..++.. ..+.++. ..-.....+++++++..+++-..++.|+.+++
T Consensus 342 -~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 -FKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -TTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -CCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 0366799999877764 4444431 00145889999999877777778888888765
No 217
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.31 E-value=9.2e-10 Score=118.11 Aligned_cols=229 Identities=10% Similarity=0.055 Sum_probs=151.2
Q ss_pred cEEEEEEecCCce-EEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEE
Q 001386 736 KISRLTYNNGGQA-IFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF 814 (1088)
Q Consensus 736 ~i~~~~~s~~g~~-l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 814 (1088)
-..+.+|++++.. +++...++.|..|+...+.. .... ....+.+++++++|++++
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-------------------~~~~-----~~~~~~~i~~~~dG~l~v 69 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-------------------QRVT-----MDAPVSSVALRQSGGYVA 69 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-------------------EEEE-----CSSCEEEEEEBTTSSEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-------------------EEEe-----CCCceEEEEECCCCCEEE
Confidence 3457888986554 45555678888887543321 1111 345788999999999555
Q ss_pred EEeCCcEEEEEcCCceeEEEecC----CCCCeEEEEEcCCCCcEEEEEeCC---------CeEEEEEcCC-ceeeeeecc
Q 001386 815 SASGGVISLYIVMTFKTILTIMP----PSPTATSLAFNPHDNNVIAIGMDD---------STILIYNARS-SEVISKLEG 880 (1088)
Q Consensus 815 ~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~sp~d~~~lasg~~d---------g~i~lwd~~~-~~~~~~l~~ 880 (1088)
+ .++.|.+||..+++....... ....+..++++| +|+++++.... ..-.||.+.. ++.. .+..
T Consensus 70 ~-~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~~ 146 (297)
T 3g4e_A 70 T-IGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK-KYFD 146 (297)
T ss_dssp E-ETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-EEEE
T ss_pred E-ECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEE-EEee
Confidence 4 577899999988765433322 123578899999 78866654321 2234444432 3332 2333
Q ss_pred ccCCeeEEEECCCCCEEE-EEeCCCcEEEEEc--CCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCCeEE
Q 001386 881 HSKRVTGLVFSDALNILV-SSGGDAQIFVWDV--DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLA 956 (1088)
Q Consensus 881 h~~~V~~l~~s~dg~~la-s~s~Dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~ 956 (1088)
+....+.++|+||++.|+ +.+.++.|.+|++ .++.......+....... .....++++++|++.++. ..+.|.
T Consensus 147 ~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~---~~p~g~~~d~~G~lwva~~~~~~v~ 223 (297)
T 3g4e_A 147 QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE---QIPDGMCIDAEGKLWVACYNGGRVI 223 (297)
T ss_dssp EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG---CEEEEEEEBTTSCEEEEEETTTEEE
T ss_pred ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC---CCCCeeEECCCCCEEEEEcCCCEEE
Confidence 445578999999998765 4456788999998 455433333333322211 246789999999988875 457899
Q ss_pred EEEcCcceeeeeeecCCCcCEEEEEEe-eCCCEEEEEeCC
Q 001386 957 IYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFVD 995 (1088)
Q Consensus 957 vwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~s~s~d 995 (1088)
+||..+|+.+..+. .+...+++++|+ ||++.|++++..
T Consensus 224 ~~d~~tG~~~~~i~-~p~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 224 RLDPVTGKRLQTVK-LPVDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EECTTTCCEEEEEE-CSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred EEcCCCceEEEEEE-CCCCCceEEEEeCCCCCEEEEEcCC
Confidence 99999999887754 345789999999 898887766643
No 218
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.31 E-value=4.7e-11 Score=131.20 Aligned_cols=273 Identities=11% Similarity=0.016 Sum_probs=175.5
Q ss_pred CCceeeeecCCCCeEEEEEc--ccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEE
Q 001386 335 SSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~la 412 (1088)
..+..++++|+|+ ++++.. .++.++||.+.+++.. .+.-|. ....+|-..+..++|+++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 5899999999998 566653 2343667776655422 111111 01234667899999999998776
Q ss_pred EEeC-----CCEEEEEEccCCCcccceeEec----cCCCCEEEEEecCCCCcEEEEEEe---CCCcEEEEeCCCCceeEE
Q 001386 413 VAYS-----KHIVQLYAYHGGSDARQQLEID----AHVGNVNDLAFSAPCKQISVITCG---DDKTIKVWDAVTGSRTYS 480 (1088)
Q Consensus 413 s~~~-----dg~i~vwd~~~~~~~~~~~~~~----~h~~~v~~~~~s~d~~~l~l~s~s---~d~~i~vwd~~~~~~~~~ 480 (1088)
+-.. ++.|.+||+.+++.++.+ .+. .+...+..+++++++.. ++++.. .++.|.+||+.+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6544 578999999988754422 221 22345689999987553 455555 678999999999988777
Q ss_pred eccCCccEE-EEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001386 481 FEGHGAPVY-SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1088)
Q Consensus 481 ~~~~~~~v~-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 559 (1088)
+.+|..... ...+ ..+|..+.+.+.+|.++.|.. .+..++|+|||+.|+++...+ ..++.
T Consensus 161 ~~~~~~~~~~~~~~--~~~g~~~~~~~~~g~~~~~~~--------------~~~gia~s~dg~~ly~~~~~~---~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDL--VIDGVPVQIGQPDGTVIRPHL--------------GVNGIVLDAENEWLYLSPMHS---TSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCC--EETTEECBEECTTSCEECCCC--------------CEEEEEECTTSCEEEEEESSC---SEEEE
T ss_pred ecCCCcccccccce--eECCEEEEeccCCCceeceec--------------ccceeEeccCCCEEEEEeCCC---CeEEE
Confidence 765432111 0222 225666777778888776631 456799999999998876432 24555
Q ss_pred EeCC---CCc-----eeE--EEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEE
Q 001386 560 WNES---EGA-----IKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1088)
Q Consensus 560 wd~~---~~~-----~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1088)
++.. .+. ... ...++. .....++++++|..+++...++.|.+||..+++........ ......+++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~---g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va 297 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEK---PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFN 297 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEEC---CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEE
T ss_pred EEHHHhcCCCCChhhhhcceEecccC---CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeE
Confidence 5532 111 000 111222 34567899999998888888999999998667654333321 223467899
Q ss_pred EecCCCEEEEEeCCCcE
Q 001386 630 FNKNGTLLAVIANENRI 646 (1088)
Q Consensus 630 ~s~~~~~l~~~~~dg~i 646 (1088)
|.+++.++++.+..+.+
T Consensus 298 ~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 298 FGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp ECTTSCEEEEECCGGGS
T ss_pred ECCCCcEEEEeCccccc
Confidence 99998887777654433
No 219
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.30 E-value=7.9e-11 Score=127.98 Aligned_cols=195 Identities=11% Similarity=0.002 Sum_probs=126.9
Q ss_pred EEEEecCCCEEEEEe---CCcEEE--EEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-----c
Q 001386 803 CFALSKNDAYLFSAS---GGVISL--YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-----S 872 (1088)
Q Consensus 803 ~~~~s~dg~~l~~~~---dg~i~i--wd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~-----~ 872 (1088)
.++++|||++++++. +..+.+ +|..+ +.++..... ..+.|++...+++.+.||.+.+.|+.+ +
T Consensus 128 ~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~ 200 (368)
T 1mda_H 128 IIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPAAAG 200 (368)
T ss_dssp SEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCCCCE
T ss_pred eEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECccccccCC
Confidence 478888888888875 346778 88876 344432111 223343445666677888888889887 5
Q ss_pred eeeee----eccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecC------CCCccCCCCeEEEEEcC
Q 001386 873 EVISK----LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP------DGVMTLAPSETHIQFHK 942 (1088)
Q Consensus 873 ~~~~~----l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~fs~ 942 (1088)
+.+.. +.-...+. + ++++..++..+. +.|.+.|+.+........+... .+... .....++|+|
T Consensus 201 ~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p--~g~~~v~~s~ 273 (368)
T 1mda_H 201 IVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRS--AGFQMVAKLK 273 (368)
T ss_dssp ECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE--CSSSCEEEET
T ss_pred eEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccccc--CcceeeEEcC
Confidence 54321 11122333 3 666666666666 8999999976432211111111 01100 1122378999
Q ss_pred CCCEEEEE-e-C--------CeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCE-EEEEe-CCCcEEEEEcCCCceEE
Q 001386 943 DQTRFLLV-H-E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM-VFTSF-VDGTLSIHEASNLEVQC 1010 (1088)
Q Consensus 943 dg~~l~~~-~-d--------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~-l~s~s-~dg~v~vwd~~~~~~~~ 1010 (1088)
|++.+.++ . . +.+.++|+.+++.+..+..+ .....++|++||++ +++.. .++.|.|+|+.+++.+.
T Consensus 274 dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg--~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~ 351 (368)
T 1mda_H 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG--HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred CCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC--CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEE
Confidence 99988874 3 2 36779999999998887654 36889999999985 55555 58999999999999998
Q ss_pred Eec
Q 001386 1011 RIL 1013 (1088)
Q Consensus 1011 ~~~ 1013 (1088)
++.
T Consensus 352 ~I~ 354 (368)
T 1mda_H 352 SVE 354 (368)
T ss_dssp ECC
T ss_pred EEE
Confidence 886
No 220
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.29 E-value=8.5e-06 Score=95.75 Aligned_cols=532 Identities=9% Similarity=-0.014 Sum_probs=290.4
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEE
Q 001386 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~ 489 (1088)
+|+.+ ....|+..++++..... ...+ ..-..+..++|.+.+.. ++++-..++.|..+++........+........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~-~~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNV-AIPL-TGVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEE-ECCC-CSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcce-EEEc-CCCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 44444 45679999998754221 1112 22346789999997774 455666678999999876544333332223456
Q ss_pred EEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeE
Q 001386 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1088)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1088)
.+++.+. ++.+.++-...+.|.+.+++.................+++.|....|+..-.. ....|...++.......
T Consensus 84 GlAvD~~-~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g--~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWL-GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG--GKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETT-TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEE
T ss_pred eEEEEeC-CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC--CCCEEEEEeCCCCceEE
Confidence 6777433 34566666777899999987665444443444567899999976666665321 14568888876554433
Q ss_pred EEeccccccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEE
Q 001386 570 TYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1088)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1088)
.... ......++++++++.|+.+. ..+.|...++..... ..+... ......+++.. +.++++-...+.|..
T Consensus 161 l~~~----~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~ 232 (628)
T 4a0p_A 161 LVPN----VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIER 232 (628)
T ss_dssp EECS----CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred EECC----CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEE
Confidence 3332 25688999999877777664 567899999876444 333322 22345677765 445555555788988
Q ss_pred EeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeec
Q 001386 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 728 (1088)
Q Consensus 649 wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~ 728 (1088)
.|..+++....+.........+.+....... +.+.+ ...+ +.- ..+.+-. +........
T Consensus 233 ~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~--~~n~C-------~~~n------g~C-~~~C~~~-----~~~~~~C~C 291 (628)
T 4a0p_A 233 ANKTSGQNRTIIQGHLDYVMDILVFHSSRQS--GWNEC-------ASSN------GHC-SHLCLAV-----PVGGFVCGC 291 (628)
T ss_dssp EETTTCCSCEEEECSCCSCCEEEEECGGGSC--CCCTT-------TTTG------GGC-SSEEEEE-----TTTEEEEEC
T ss_pred EECCCCCceEEEecCCCCcceeeeeeecccc--cceEe-------ccCC------CCc-chhhhcC-----CCCCeeEEc
Confidence 8887776555444332222233222110000 00000 0000 000 0000000 000000000
Q ss_pred CC--ccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEE
Q 001386 729 PS--KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 806 (1088)
Q Consensus 729 ~~--~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 806 (1088)
+. .......+|.. ...+++.+. ...|+-..+.... .. ... ++. ..-..+.++++
T Consensus 292 ~~g~~l~~d~~~C~~---~~~~Ll~s~-~~~i~~i~l~~~~----------------~~-~~~--l~~-~~~~~~~~ld~ 347 (628)
T 4a0p_A 292 PAHYSLNADNRTCSA---PTTFLLFSQ-KSAINRMVIDEQQ----------------SP-DII--LPI-HSLRNVRAIDY 347 (628)
T ss_dssp STTCEECTTSSCEEC---CSSEEEEEE-TTEEEEECCCTTC----------------CC-CEE--CCC-TTCSCEEEEEE
T ss_pred CCCcEecccCCcCcc---ccceeeeec-cceEEEEeccccc----------------Cc-eEE--EEe-hhcCCceEEEE
Confidence 00 00001111111 122333322 2233322221110 00 001 111 12345778999
Q ss_pred ecCCCEEEEEe--CCcEEEEEcCCceeEEEecC------CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee
Q 001386 807 SKNDAYLFSAS--GGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 878 (1088)
Q Consensus 807 s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l 878 (1088)
.+....|..+. .+.|..++.........+.. ....+..+|+...++++..+-+..+.|.+.++. |+....+
T Consensus 348 d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l 426 (628)
T 4a0p_A 348 DPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVV 426 (628)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEE
T ss_pred ecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEE
Confidence 99877777776 57788888764433333332 234678999998445566677778899999986 4444333
Q ss_pred -ccccCCeeEEEECC-CCCEEEEEeCCC--cEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEe--C
Q 001386 879 -EGHSKRVTGLVFSD-ALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH--E 952 (1088)
Q Consensus 879 -~~h~~~V~~l~~s~-dg~~las~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~--d 952 (1088)
........+|++.| .|.+..+-.... .|...+++...... ... ... .....+++++++..|..+. .
T Consensus 427 ~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~--l~~---~~l---~~P~gla~D~~~~~LYw~D~~~ 498 (628)
T 4a0p_A 427 LKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREV--LFF---SGL---SKPIALALDSRLGKLFWADSDL 498 (628)
T ss_dssp EECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEE--EEC---SSC---SCEEEEEEETTTTEEEEEETTT
T ss_pred EeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEE--EEe---ccC---CCccEEEEeCCCCEEEEEeCCC
Confidence 33456689999999 554444433222 46666666532111 111 111 2468999999988777753 4
Q ss_pred CeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEe
Q 001386 953 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1012 (1088)
Q Consensus 953 ~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~ 1012 (1088)
+.|...++. |.....+..........+++.. +....+=...+.|...|-.+|+....+
T Consensus 499 ~~I~~~~~d-G~~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i 556 (628)
T 4a0p_A 499 RRIESSDLS-GANRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKV 556 (628)
T ss_dssp TEEEEEETT-SCSCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred CEEEEEeCC-CCceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence 689999985 4444444434445567777654 444444445678888888877654433
No 221
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.28 E-value=2.1e-09 Score=115.22 Aligned_cols=230 Identities=12% Similarity=0.098 Sum_probs=154.0
Q ss_pred CCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEE
Q 001386 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1088)
Q Consensus 333 h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~la 412 (1088)
+..-..+..|+|++..++++...++.|..||..+++... + .....+.+++++++|++++
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~~~~i~~~~dG~l~v 69 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR--------------------V-TMDAPVSSVALRQSGGYVA 69 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE--------------------E-ECSSCEEEEEEBTTSSEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-eCCCceEEEEECCCCCEEE
Confidence 333556889999776688888888999999998876421 1 1346799999999999655
Q ss_pred EEeCCCEEEEEEccCCCcccceeEecc--CCCCEEEEEecCCCCcEEEEEE-eC--------CCcEEEEeCCC-CceeEE
Q 001386 413 VAYSKHIVQLYAYHGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITC-GD--------DKTIKVWDAVT-GSRTYS 480 (1088)
Q Consensus 413 s~~~dg~i~vwd~~~~~~~~~~~~~~~--h~~~v~~~~~s~d~~~l~l~s~-s~--------d~~i~vwd~~~-~~~~~~ 480 (1088)
+ . ++.|.+||.++++... +..... ....+..++++|+|+ ++++. .. ...-.+|.+.. ++.. .
T Consensus 70 ~-~-~~~l~~~d~~~g~~~~-~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~ 143 (297)
T 3g4e_A 70 T-I-GTKFCALNWKEQSAVV-LATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVK-K 143 (297)
T ss_dssp E-E-TTEEEEEETTTTEEEE-EEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-E
T ss_pred E-E-CCeEEEEECCCCcEEE-EEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEE-E
Confidence 4 3 5679999998875322 111111 123588999999998 44443 21 12334554443 3332 3
Q ss_pred eccCCccEEEEeeeeeCCceEE-EEEecCCeEEEEECC--CCCce-----EEecCCCCceEEEEEccCCCEEEEEeeCCC
Q 001386 481 FEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYD--SLGAR-----VDYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1088)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~--~~~~~-----~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~ 552 (1088)
+..+....+.++|+ ++++.+ ++.+.++.|.+|+++ ++... ..+.........++++++|++.++...
T Consensus 144 ~~~~~~~pngi~~s--pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~--- 218 (297)
T 3g4e_A 144 YFDQVDISNGLDWS--LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN--- 218 (297)
T ss_dssp EEEEESBEEEEEEC--TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET---
T ss_pred EeeccccccceEEc--CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC---
Confidence 33333456778884 466555 556668899999984 33221 122222346788999999977666542
Q ss_pred CceeEEEEeCCCCceeEEEeccccccccEEEEEEe-CCCCEEEEEeC
Q 001386 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGD 598 (1088)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~ 598 (1088)
.+.|..||..+++.+..+..+. ..+.+++|. |+++.|++++.
T Consensus 219 -~~~v~~~d~~tG~~~~~i~~p~---~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 219 -GGRVIRLDPVTGKRLQTVKLPV---DKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp -TTEEEEECTTTCCEEEEEECSS---SBEEEEEEESGGGCEEEEEEB
T ss_pred -CCEEEEEcCCCceEEEEEECCC---CCceEEEEeCCCCCEEEEEcC
Confidence 3459999999999998888765 679999998 88888777654
No 222
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.27 E-value=5e-10 Score=120.77 Aligned_cols=239 Identities=12% Similarity=0.044 Sum_probs=160.7
Q ss_pred hhheeecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEE
Q 001386 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1088)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1088)
...+..|..+.......+|+|+|+.+++++..++.|..|+. +++.. . +..+...+..++
T Consensus 34 ~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~-~-------------------~~~~~~~~~gl~ 92 (305)
T 3dr2_A 34 DARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD-V-------------------LLDATAFTNGNA 92 (305)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEE-E-------------------EEESCSCEEEEE
T ss_pred CCceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE-E-------------------EeCCCCccceee
Confidence 44455666666688899999999988889888999999998 45422 1 223556789999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccC-CCCEEEEEecCCCCcEEEEE----EeC-------------CC
Q 001386 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVIT----CGD-------------DK 465 (1088)
Q Consensus 404 ~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~l~l~s----~s~-------------d~ 465 (1088)
++++|+++++...++.|.+|+.+ ++.........+. ...+..+++.++|+ +.++ |.. .+
T Consensus 93 ~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~ 169 (305)
T 3dr2_A 93 VDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHH 169 (305)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCE
T ss_pred ECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCC
Confidence 99999977766666889999986 4422111111111 13467899999998 6665 322 25
Q ss_pred cEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecC------CeEEEEECCCCCc---eEEecCCCCceEEEE
Q 001386 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGA---RVDYDAPGLGCTRMA 536 (1088)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~---~~~~~~~~~~v~~~~ 536 (1088)
.|..||..+++..... .......++| +++++.|+.+... +.|.+|++..... .............++
T Consensus 170 ~v~~~d~~~g~~~~~~--~~~~p~gl~~--spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~ 245 (305)
T 3dr2_A 170 SVYRLPPDGSPLQRMA--DLDHPNGLAF--SPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFC 245 (305)
T ss_dssp EEEEECSSSCCCEEEE--EESSEEEEEE--CTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEE
T ss_pred eEEEEcCCCCcEEEEe--cCCCCcceEE--cCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEE
Confidence 6888887777755433 3345567787 5567767666655 7899999875431 111112233455689
Q ss_pred EccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCc
Q 001386 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 601 (1088)
Q Consensus 537 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~ 601 (1088)
++++|+..++. . + .|.+|+. .++.+..+.... .+..++|+++++.|+.++.++.
T Consensus 246 ~d~~G~lwv~~-~----~-gv~~~~~-~g~~~~~~~~~~----~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 246 VDRGGWLWSSS-G----T-GVCVFDS-DGQLLGHIPTPG----TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp ECTTSCEEECC-S----S-EEEEECT-TSCEEEEEECSS----CCCEEEECTTSCEEEEEETTEE
T ss_pred ECCCCCEEEec-C----C-cEEEECC-CCCEEEEEECCC----ceeEEEEeCCCCEEEEEcCCeE
Confidence 99999954443 1 2 3999998 577777776544 4788899999998888887643
No 223
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.26 E-value=2.5e-10 Score=125.35 Aligned_cols=272 Identities=8% Similarity=0.006 Sum_probs=177.5
Q ss_pred ccEEEEEEecCCceEEEecc--ccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCE
Q 001386 735 NKISRLTYNNGGQAIFALAS--NGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 812 (1088)
Q Consensus 735 ~~i~~~~~s~~g~~l~~~~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 812 (1088)
..+..++++++|+.+++... ++.+++|.+..+.. .-|. +.. .....+-..+..++++++|++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~--------~~~p--~~~------~~~~~~~~~p~gv~~d~~g~L 80 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL--------IPFP--PQS------GNAIITFDTVLGIKSDGNGIV 80 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE--------EESC--CCC------SSCCCCCSCEEEEEECSSSEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe--------ecCC--Ccc------cCcccceeEeeEEEEcCCCcE
Confidence 46789999999998877542 34367777652111 0000 000 001135568899999999987
Q ss_pred EEEEe------CCcEEEEEcCCceeEEEecCC------CCCeEEEEEcCCCCcEEEEEe---CCCeEEEEEcCCceeeee
Q 001386 813 LFSAS------GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIGM---DDSTILIYNARSSEVISK 877 (1088)
Q Consensus 813 l~~~~------dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~sp~d~~~lasg~---~dg~i~lwd~~~~~~~~~ 877 (1088)
+++.. ++.|.+||+.+++.+..+..+ ...+..++++++++..+++.. .++.|.+||+.+++....
T Consensus 81 ~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 81 WMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 66553 368999999999877766532 235689999984455556555 678999999999988777
Q ss_pred eccccCCee-EEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eC-Ce
Q 001386 878 LEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE-TH 954 (1088)
Q Consensus 878 l~~h~~~V~-~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d-~~ 954 (1088)
+.+|..... ...++++|..+.+.+.|+.++.|.. .+..++|+|||+.|.++ .. +.
T Consensus 161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~~~~~ 218 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPMHSTS 218 (343)
T ss_dssp CTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEESSCSE
T ss_pred ecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeCCCCe
Confidence 766533211 1445667888888888888766532 25689999999988875 33 35
Q ss_pred EEEEEcCc---c-----eeeeee-ecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccc
Q 001386 955 LAIYEAEE---L-----TCLKQW-FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCL 1025 (1088)
Q Consensus 955 i~vwd~~~---~-----~~~~~~-~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1025 (1088)
+..++... + +....+ ..++......++++++|.++++...++.|.+||..+|+...... . ..
T Consensus 219 l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~-~--------~~ 289 (343)
T 2qe8_A 219 MYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT-D--------EK 289 (343)
T ss_dssp EEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-C--------GG
T ss_pred EEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-C--------Cc
Confidence 55555321 1 000000 11233456678999999999988889999999986676433222 0 01
Q ss_pred cccceEEEECCCCCCEEEEEeCCCcEEEE
Q 001386 1026 HVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1054 (1088)
Q Consensus 1026 ~~~~~~~~~~p~d~~~l~~~~~dg~v~~w 1054 (1088)
..++..++|.| ++.++++....+.+.+|
T Consensus 290 ~~~p~~va~~~-~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 290 LSWTDSFNFGS-DGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp GSCEEEEEECT-TSCEEEEECCGGGSGGG
T ss_pred eecCCeeEECC-CCcEEEEeCcccccccc
Confidence 24577899999 68888888766555433
No 224
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.25 E-value=2e-10 Score=124.75 Aligned_cols=273 Identities=10% Similarity=-0.036 Sum_probs=174.2
Q ss_pred CeEEEEEcccC----cEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe-------
Q 001386 347 HTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY------- 415 (1088)
Q Consensus 347 ~~lla~g~~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~------- 415 (1088)
.++.++...++ +|.+.|..+++.+.+.. .+. .+ .++++|||+++.++.
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~------------------vG~-~P--~i~~spDg~~lyVan~~~~r~~ 90 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHSL------------------GAF-LS--LAVAGHSGSDFALASTSFARSA 90 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEEEE------------------ECT-TC--EEEECTTSSCEEEEEEEETTTT
T ss_pred CeEEEECCccCCccceEEEEECCCCeEEEEEe------------------CCC-CC--ceEECCCCCEEEEEcccccccc
Confidence 34566665555 88899999999887532 122 34 799999999999886
Q ss_pred ---CCCEEEEEEccCCCcccceeEecc-C----CCCEEEEEecCCCCcEEEEEEe--CCCcEEE--EeCCCCceeEEecc
Q 001386 416 ---SKHIVQLYAYHGGSDARQQLEIDA-H----VGNVNDLAFSAPCKQISVITCG--DDKTIKV--WDAVTGSRTYSFEG 483 (1088)
Q Consensus 416 ---~dg~i~vwd~~~~~~~~~~~~~~~-h----~~~v~~~~~s~d~~~l~l~s~s--~d~~i~v--wd~~~~~~~~~~~~ 483 (1088)
.++.|.+||+.+++.+..+. +.+ . ......++|+|||++ ++.+. .+..+.+ +|+.+ +.++..
T Consensus 91 ~G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i~v 164 (368)
T 1mda_H 91 KGKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLTKS 164 (368)
T ss_dssp SSSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEEEC
T ss_pred cCCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEEEC
Confidence 36789999999998776432 210 0 123568999999995 44443 3467888 99877 444432
Q ss_pred CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCC-----CCceE----EecCCCCceEEEEEccCCCEEEEEeeCCCCc
Q 001386 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-----LGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1088)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~----~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~ 554 (1088)
.. . ..+.+... ..+++.+.||.+.+.|+++ ++... .+.....+. . ++++..++..+.
T Consensus 165 ~~-~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~----- 230 (368)
T 1mda_H 165 AS-C---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA----- 230 (368)
T ss_dssp SS-C---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-----
T ss_pred CC-c---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-----
Confidence 11 1 12233333 3455677788888888876 22111 011112232 3 666666665543
Q ss_pred eeEEEEeCCCCc--eeEEEecc-------ccccccEEEEEEeCCCCEEEEEeC---------CCcEEEEEcCCCeeeEEE
Q 001386 555 SFLVEWNESEGA--IKRTYQGL-------QLQHNSVSVVHFDTAKDQILAAGD---------DHVIKIWDMNKVQLLTTI 616 (1088)
Q Consensus 555 ~~i~iwd~~~~~--~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~s~---------dg~i~iwd~~~~~~~~~~ 616 (1088)
+.+.+.|..++. .+..+... .........+.++|++++++.+.. ++.+.++|+.+++.+..+
T Consensus 231 ~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i 310 (368)
T 1mda_H 231 SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI 310 (368)
T ss_dssp SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC
T ss_pred CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEE
Confidence 348888886542 22222110 000011122679999999887643 235669999999999888
Q ss_pred eCCCCCCCCceEEEecCCC-EEEEEe-CCCcEEEEeCCCCCcccccccc
Q 001386 617 DAGGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDAAGVL 663 (1088)
Q Consensus 617 ~~~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~ 663 (1088)
..... ...++|+|||+ ++++.. .++.|.++|+.+++.+..+...
T Consensus 311 ~vg~~---p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg 356 (368)
T 1mda_H 311 SNGHD---SDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD 356 (368)
T ss_dssp EEEEE---ECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred ECCCC---cceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence 75542 57899999998 455555 5899999999999888776643
No 225
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.23 E-value=3.9e-10 Score=136.61 Aligned_cols=245 Identities=9% Similarity=0.071 Sum_probs=160.4
Q ss_pred CCCCCeEEEEECCCCCEEEEEe-----CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCC---
Q 001386 394 DPGVSVNRVVWSPDGSLLGVAY-----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--- 465 (1088)
Q Consensus 394 ~h~~~V~~l~~s~dg~~las~~-----~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~--- 465 (1088)
+|...+..++|||||++||.+. .+..|++||+.+|+.+.. .+.+. ....++|+ ||+ .|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~~--k~~~~~Ws-Dg~--~l~y~~~~~~~~ 198 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKDV--KFSGISWL-GNE--GFFYSSYDKPDG 198 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEEE--ESCCCEEE-TTT--EEEEEESSCCC-
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCCc--eeccEEEe-CCC--EEEEEEecCccc
Confidence 3566788999999999999653 235799999999975432 12111 13567999 999 566666553
Q ss_pred ----------cEEEEeCCCCce----eEEecc-CCccEEEEeeeeeCCceEEEEEec----CCeEEEEECCCCC-ceEEe
Q 001386 466 ----------TIKVWDAVTGSR----TYSFEG-HGAPVYSLCPHAKENIHFIFSISV----DGKIKAWLYDSLG-ARVDY 525 (1088)
Q Consensus 466 ----------~i~vwd~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~-~~~~~ 525 (1088)
.|++|++.++.. +..... |...+..+.+ ++||++|+.... +..|.++|+.+.. ....+
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATV--TEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEE--CTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEE--cCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 499999987653 222233 4445666666 567777755443 2489999998764 33444
Q ss_pred cCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCce--eEEEeccccccccEEEEEEeCCCCEEEEEeCCC---
Q 001386 526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--- 600 (1088)
Q Consensus 526 ~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--- 600 (1088)
..+....... ++++|..|+..+........|..+|+.++.. .+.+..+. ..+. .|++++++|+....++
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~--~~s~~g~~lv~~~~~~g~~ 350 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER---QQVL--TVHSGSGYLFAEYMVDATA 350 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC---SSCE--EEEEETTEEEEEEEETTEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC---CCEE--EEEEECCEEEEEEEECCee
Confidence 4444444444 7788888777665433357899999988754 34555554 3333 8899999888766443
Q ss_pred cEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCC----CcEEEEeCCCCC
Q 001386 601 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE----NRIKILETPESN 655 (1088)
Q Consensus 601 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d----g~i~iwd~~~~~ 655 (1088)
.|++|++..+ ....+.... ...+..+.+++++..++....+ +.+..||+.+++
T Consensus 351 ~l~~~d~~g~-~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 351 RVEQFDYEGK-RVREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEECTTSC-EEEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEEEECCCC-eeEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 6889998754 445554322 1234556677888777666554 789999987664
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.21 E-value=4.4e-09 Score=125.77 Aligned_cols=228 Identities=14% Similarity=0.114 Sum_probs=152.9
Q ss_pred CCcEEEEEcCCceeEEEecCCCCC--------------------------------eEEEEEcCCCCcEEEEEeCCC---
Q 001386 818 GGVISLYIVMTFKTILTIMPPSPT--------------------------------ATSLAFNPHDNNVIAIGMDDS--- 862 (1088)
Q Consensus 818 dg~i~iwd~~~~~~~~~~~~~~~~--------------------------------i~~l~~sp~d~~~lasg~~dg--- 862 (1088)
++.|+.+|..+|+.+..+...... ...++++| ++.+++.++.++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w 267 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPW 267 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccc
Confidence 567888888888888766532211 13578899 677888877664
Q ss_pred ----------------eEEEEEcCCceeeeeecc--cc-------CCeeEEEECCCC---CEEEEEeCCCcEEEEEcCCC
Q 001386 863 ----------------TILIYNARSSEVISKLEG--HS-------KRVTGLVFSDAL---NILVSSGGDAQIFVWDVDGW 914 (1088)
Q Consensus 863 ----------------~i~lwd~~~~~~~~~l~~--h~-------~~V~~l~~s~dg---~~las~s~Dg~i~iwd~~~~ 914 (1088)
.|..+|..+|+.+..++. |. ....-+....+| ..++.++.+|.|+++|..+|
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 599999999999877653 31 122223344477 67899999999999999998
Q ss_pred ceeeeeeeecC--------CCCcc-----------------CC--CCeEEEEEcCCCCEEEEE-eC--------------
Q 001386 915 GIQTCRSLQTP--------DGVMT-----------------LA--PSETHIQFHKDQTRFLLV-HE-------------- 952 (1088)
Q Consensus 915 ~~~~~~~~~~~--------~~~~~-----------------~~--~~v~~~~fs~dg~~l~~~-~d-------------- 952 (1088)
+......+... .+... .. ..-..++|+|++.++.+. .+
T Consensus 348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g 427 (677)
T 1kb0_A 348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFN 427 (677)
T ss_dssp CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTT
T ss_pred CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccc
Confidence 75432221100 00000 00 001267899998888773 21
Q ss_pred -----------------------------CeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 001386 953 -----------------------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1003 (1088)
Q Consensus 953 -----------------------------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~ 1003 (1088)
+.|..||+.+|+.+.+... ..++....++.++..+++++.||.+++||+
T Consensus 428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~ 505 (677)
T 1kb0_A 428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH--VSPWNGGTLTTAGNVVFQGTADGRLVAYHA 505 (677)
T ss_dssp CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred cccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC--CCCCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence 6799999999998877543 344555667888999999999999999999
Q ss_pred CCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEE-eC----------------CCcEEEEeCCC
Q 001386 1004 SNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG-LT----------------NGEVYVIEPNE 1058 (1088)
Q Consensus 1004 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~-~~----------------dg~v~~w~l~~ 1058 (1088)
.+|+.+.++..... +...-+.|.+ +|+++++. +. .+.+.+|.+..
T Consensus 506 ~tG~~lw~~~~~~~---------~~~~p~~y~~-~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 506 ATGEKLWEAPTGTG---------VVAAPSTYMV-DGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp TTCCEEEEEECSSC---------CCSCCEEEEE-TTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred CCCceeeeeeCCCC---------cccCCEEEEe-CCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 99999998873321 1222245555 56655443 22 47899999973
No 227
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.20 E-value=9.7e-10 Score=119.49 Aligned_cols=184 Identities=11% Similarity=0.072 Sum_probs=135.4
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~ 415 (1088)
.+..+++++... ++++|+.+ .+++|++.+....... ....++......+.. |+.++| |+++|+++
T Consensus 39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~---------~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~- 103 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITS---------DSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS- 103 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHS---------SSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-
T ss_pred cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhcc---------ccccccceEEeeCCC-eeEEEE--CCCEEEEE-
Confidence 799999999998 67777776 5666998655411000 000011111223566 999999 99999999
Q ss_pred CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeee
Q 001386 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 495 (1088)
.++.|++||+.+..... ....|..++.++.+.+.. +++++.||.|.+||+.++.... +...|.+++|++
T Consensus 104 ~~~~l~v~dv~sl~~~~---~~~~~~~~v~~i~~~~p~----~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSp 172 (388)
T 1xip_A 104 TRNALYSLDLEELSEFR---TVTSFEKPVFQLKNVNNT----LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTN 172 (388)
T ss_dssp ESSEEEEEESSSTTCEE---EEEECSSCEEEEEECSSE----EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECS
T ss_pred cCCcEEEEEchhhhccC---ccceeecceeeEEecCCC----EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcC
Confidence 88999999998765333 456778889988877642 6778899999999999887653 446899999955
Q ss_pred eCCceEEEEEecCCeEEEEECCCCCc--eEEe------c---CCCCceEEEEEccCCCEEEEEee
Q 001386 496 KENIHFIFSISVDGKIKAWLYDSLGA--RVDY------D---APGLGCTRMAYSANGRRLFSCGT 549 (1088)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~------~---~~~~~v~~~~~s~~g~~l~~~~~ 549 (1088)
+| ++.|..||.+++|+.+.... ...+ . .+...|.++.|.+++.++++-..
T Consensus 173 --kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~ 233 (388)
T 1xip_A 173 --SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN 233 (388)
T ss_dssp --SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred --Cc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence 55 68899999999998877664 4444 2 25678999999999999987553
No 228
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.19 E-value=1.6e-08 Score=112.87 Aligned_cols=209 Identities=10% Similarity=0.045 Sum_probs=129.0
Q ss_pred CCcEEEEEcCCceeEEEecCCCCCe-----EEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCC----ee--
Q 001386 818 GGVISLYIVMTFKTILTIMPPSPTA-----TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR----VT-- 886 (1088)
Q Consensus 818 dg~i~iwd~~~~~~~~~~~~~~~~i-----~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~----V~-- 886 (1088)
++.|..+|..+|+.+.......... ...... + ..+++++.+|.|..+|..+|+.+......... +.
T Consensus 152 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~-~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~ 228 (376)
T 3q7m_A 152 NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--F-GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRL 228 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--T-TEEEECCTTTEEEEEETTTCCEEEEEECCC----------
T ss_pred CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--C-CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccc
Confidence 6677777777777766655332111 222232 2 36777888999999999999988766532110 00
Q ss_pred -EEEECC--CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcc
Q 001386 887 -GLVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL 963 (1088)
Q Consensus 887 -~l~~s~--dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~ 963 (1088)
.+.-+| .+..+..++.++.+..+|..+++..-... .+ ....+... ++..++.+.++.+..+|..+|
T Consensus 229 ~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~----~~------~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG 297 (376)
T 3q7m_A 229 SDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE----LG------SVNDFIVD-GNRIYLVDQNDRVMALTIDGG 297 (376)
T ss_dssp -CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC----CC------CEEEEEEE-TTEEEEEETTCCEEEEETTTC
T ss_pred cccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc----CC------CCCCceEE-CCEEEEEcCCCeEEEEECCCC
Confidence 011111 24667778889999999999876432111 11 13333332 444444567889999999999
Q ss_pred eeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccc-eEEEECCCCCCEE
Q 001386 964 TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP-HAIAAHPLKPTQF 1042 (1088)
Q Consensus 964 ~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~d~~~l 1042 (1088)
+.+..........+..... .+..|++++.+|.|.++|..+|+.+.+..... ..+.. ..+. +..|
T Consensus 298 ~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~--------~~~~~~~~~~-----~~~l 362 (376)
T 3q7m_A 298 VTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDS--------SGFQTEPVAA-----DGKL 362 (376)
T ss_dssp CEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCT--------TCBCSCCEEE-----TTEE
T ss_pred cEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCC--------CcceeCCEEE-----CCEE
Confidence 9876643222222223333 35678889999999999999999987765311 01111 1221 3578
Q ss_pred EEEeCCCcEEEEe
Q 001386 1043 AVGLTNGEVYVIE 1055 (1088)
Q Consensus 1043 ~~~~~dg~v~~w~ 1055 (1088)
++++.+|.|+.|+
T Consensus 363 ~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 363 LIQAKDGTVYSIT 375 (376)
T ss_dssp EEEBTTSCEEEEE
T ss_pred EEEeCCCEEEEEe
Confidence 8899999999987
No 229
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.19 E-value=6.2e-09 Score=113.16 Aligned_cols=225 Identities=13% Similarity=0.025 Sum_probs=149.2
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~ 415 (1088)
-..+.+|+|++..++.++..++.|.+||..+++... +. ....|.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~~-~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------HA-LPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------EE-CSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------EE-CCCcceEEEEeCCCeEEEEE-
Confidence 346789999877788888888999999998875331 11 23579999999999887764
Q ss_pred CCCEEEEEEccCCCcccceeEec-c-CCCCEEEEEecCCCCcEEEEEEeC------CCcEEEEeCCCCceeEEeccCCcc
Q 001386 416 SKHIVQLYAYHGGSDARQQLEID-A-HVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFEGHGAP 487 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~~~-~-h~~~v~~~~~s~d~~~l~l~s~s~------d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1088)
.+ .|.+||..+++... +.... + ....+.+++++|+|+ ++++... .+.|..+| +++.. .+..+...
T Consensus 108 ~~-gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~ 180 (326)
T 2ghs_A 108 DD-GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISI 180 (326)
T ss_dssp TT-EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESS
T ss_pred CC-CEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcc
Confidence 44 49999998876322 11111 1 123688999999998 4444332 24555556 45443 33223334
Q ss_pred EEEEeeeeeCCceEE-EEEecCCeEEEEECC--CC-Cc-----eEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEE
Q 001386 488 VYSLCPHAKENIHFI-FSISVDGKIKAWLYD--SL-GA-----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1088)
Q Consensus 488 v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~--~~-~~-----~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~ 558 (1088)
...++| +++++.+ ++.+.++.|.+||++ ++ .. ...+.........++++++|.+.++... .+.|.
T Consensus 181 ~~~i~~--s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~----~~~v~ 254 (326)
T 2ghs_A 181 PNSICF--SPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVD 254 (326)
T ss_dssp EEEEEE--CTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEE
T ss_pred cCCeEE--cCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC----CCEEE
Confidence 667777 4566655 444567899999986 43 21 1122223445678999999987766532 34599
Q ss_pred EEeCCCCceeEEEeccccccccEEEEEEe-CCCCEEEEEeCC
Q 001386 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDD 599 (1088)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~d 599 (1088)
.||. +++.+..+.... ..+.+++|+ ++++.|++++..
T Consensus 255 ~~d~-~g~~~~~i~~~~---~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 255 RYDT-DGNHIARYEVPG---KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EECT-TCCEEEEEECSC---SBEEEEEEESTTSCEEEEEEBC
T ss_pred EECC-CCCEEEEEECCC---CCcEEEEEecCCCCEEEEEecC
Confidence 9998 677777776554 579999998 888877665543
No 230
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.18 E-value=1.9e-05 Score=92.62 Aligned_cols=521 Identities=7% Similarity=-0.034 Sum_probs=273.2
Q ss_pred CCCEEEEEEccCCC-cccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce-eEEeccCCccEEEEee
Q 001386 416 SKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCP 493 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~ 493 (1088)
....|+..++.... ... .+......+..++|++.+.. ++++-...+.|..+++..... ...+...-.....+++
T Consensus 16 ~~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAv 91 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 91 (619)
T ss_dssp CSSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEE
T ss_pred ccccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEE
Confidence 34557777877542 111 12223345789999997774 444555567899999776532 2233333356778888
Q ss_pred eeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEec
Q 001386 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 573 (1088)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 573 (1088)
.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+..... ....|...++...........
T Consensus 92 D~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g--~~~~I~r~~~dG~~~~~l~~~ 168 (619)
T 3s94_A 92 DWL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSRFIIINS 168 (619)
T ss_dssp ETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEEEECS
T ss_pred Eec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC--CCCEEEEEECCCCceEEEEeC
Confidence 543 34566666778999999998765544444444556789999987666665421 134577777654333222222
Q ss_pred cccccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCC
Q 001386 574 LQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1088)
Q Consensus 574 ~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1088)
. ....+.+++++++..|+.+. ..+.|...++............ ......+++..+ .++++-...+.|...|..
T Consensus 169 ~---~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~ 242 (619)
T 3s94_A 169 E---IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKY 242 (619)
T ss_dssp S---CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESS
T ss_pred C---CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECC
Confidence 2 25678999999877776654 5678888888654443333211 122357787665 444454557889999988
Q ss_pred CCCcccccccccCcceeeeec-CCCccee-ccc----cCC-ceeecCCCCCCCCcccccccCccceeccccccCCCccee
Q 001386 653 ESNSVDAAGVLSDNLRKLSVN-PISTVTG-AGI----ANG-SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 725 (1088)
Q Consensus 653 ~~~~~~~~~~~~~~v~~~~~~-p~~~~~~-~~~----~~~-~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~ 725 (1088)
+++....+.........+++. |.....+ ..+ ..+ .+.+. ++......+...+|...
T Consensus 243 tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~---~~~~~~~~C~C~~g~~l-------------- 305 (619)
T 3s94_A 243 TGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLM---SPVKPFYQCACPTGVKL-------------- 305 (619)
T ss_dssp SCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEE---CSSTTSEEEECCTTCCB--------------
T ss_pred CCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEEC---CCCCCCceEeCCchhee--------------
Confidence 776554443322222233322 1110000 000 000 00000 00000000000000000
Q ss_pred eecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEE
Q 001386 726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 805 (1088)
Q Consensus 726 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 805 (1088)
.....+|. .....+|+. +..+.|+..++..... . ...... ..-..+.+++
T Consensus 306 -------~~d~~~C~--~~~~~~Ll~-~~~~~i~~i~l~~~~~----------------~-~~~~~~---~~l~~~~~ld 355 (619)
T 3s94_A 306 -------LENGKTCK--DGATELLLL-ARRTDLRRISLDTPDF----------------T-DIVLQL---EDIRHAIAID 355 (619)
T ss_dssp -------CTTSSCBC--SSCSEEEEE-EESSCEEEEESSSTTC----------------C-CEECCC---SCCSSEEEEE
T ss_pred -------cccCcccC--CCCceEEEE-EcccceEEEecCCCcc----------------c-eeEEec---cccCccEEEE
Confidence 00000000 011122332 3334555555443221 0 001111 1234577899
Q ss_pred EecCCCEEEEEe--CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccC
Q 001386 806 LSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK 883 (1088)
Q Consensus 806 ~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~ 883 (1088)
+.+.+..|..++ .+.|..+++........+...-.....+++.+.++++..+-+..+.|.+.++........+...-.
T Consensus 356 ~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~ 435 (619)
T 3s94_A 356 YDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLE 435 (619)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCC
T ss_pred EEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCC
Confidence 998767776665 678999998754433334333356778999864566777666778999999875432222233345
Q ss_pred CeeEEEECCCCCEEEEEeC--CCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE--eCCeEEEEE
Q 001386 884 RVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYE 959 (1088)
Q Consensus 884 ~V~~l~~s~dg~~las~s~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~--~d~~i~vwd 959 (1088)
...+|++.|...+|..+.. ...|...+++..... .+. .... .....+++++++..|..+ ..+.|..++
T Consensus 436 ~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~---~l~--~~~l---~~P~GlalD~~~~~LY~aD~~~~~I~~~~ 507 (619)
T 3s94_A 436 EPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV---VLV--NTSL---GWPNGLALDYDEGKIYWGDAKTDKIEVMN 507 (619)
T ss_dssp SEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE---EEE--CSSC---SCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE---EEE--eCCC---CCCeeeEEcccCCEEEEEECCCCEEEEEe
Confidence 6789999997555554442 356666677653311 111 1111 256899999987777765 446788888
Q ss_pred cCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEe-CCCcEEEEEcCCCc
Q 001386 960 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEASNLE 1007 (1088)
Q Consensus 960 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s-~dg~v~vwd~~~~~ 1007 (1088)
+.... ...+..........++...+ +|+.+. ..+.|..-+..+|.
T Consensus 508 ~dG~~-~~~~~~~~l~~P~glav~~~--~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 508 TDGTG-RRVLVEDKIPHIFGFTLLGD--YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp SSSCC-CEEEEECCCCSSCCEEEETT--EEEEECTTSSCEEEEESSSCC
T ss_pred cCCCc-eEEEeccCCCCcEEEEEECC--EEEEeecCCCeEEEEEcCCCc
Confidence 76332 33332222222334555433 555443 45678777877773
No 231
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.16 E-value=9.1e-09 Score=123.06 Aligned_cols=199 Identities=11% Similarity=0.089 Sum_probs=132.7
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeccCCcc----------E-EEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEe
Q 001386 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP----------V-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1088)
Q Consensus 457 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 525 (1088)
.++.++.++.|..+|..+|+.+.++...... + ..+++ ++..++.++.|+.|..+|..+++.+..+
T Consensus 79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE----ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 4666777899999999999999887643211 0 11222 2347888899999999999999988877
Q ss_pred cCC-C----CceEEEEEccCCCEEEEEeeCCC--CceeEEEEeCCCCceeEEEeccccc---------------------
Q 001386 526 DAP-G----LGCTRMAYSANGRRLFSCGTSKE--GESFLVEWNESEGAIKRTYQGLQLQ--------------------- 577 (1088)
Q Consensus 526 ~~~-~----~~v~~~~~s~~g~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~~--------------------- 577 (1088)
... . ..+.+.-.. .+..++++....+ .++.|+.+|..+|+.+-.+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g 233 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred cCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence 654 2 111110011 2345555442211 2578999999999998777643210
Q ss_pred --------cccEEEEEEeCCCCEEEEEeCCC-------------------cEEEEEcCCCeeeEEEeCCCCC-------C
Q 001386 578 --------HNSVSVVHFDTAKDQILAAGDDH-------------------VIKIWDMNKVQLLTTIDAGGGL-------P 623 (1088)
Q Consensus 578 --------~~~v~~~~~~~~~~~l~~~s~dg-------------------~i~iwd~~~~~~~~~~~~~~~~-------~ 623 (1088)
......++++|++..++.++.++ .|..+|..+|+.+..++...+. .
T Consensus 234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 313 (677)
T 1kb0_A 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ 313 (677)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCC
Confidence 01113578899999999887664 5999999999999888753221 1
Q ss_pred CCceEEEecCC---CEEEEEeCCCcEEEEeCCCCCccccc
Q 001386 624 ENPRICFNKNG---TLLAVIANENRIKILETPESNSVDAA 660 (1088)
Q Consensus 624 ~v~~v~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~ 660 (1088)
....+....+| ..++.++.+|.++++|..+++.+...
T Consensus 314 ~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~ 353 (677)
T 1kb0_A 314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAK 353 (677)
T ss_dssp CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred CcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccc
Confidence 11223333477 68899999999999999998776543
No 232
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.16 E-value=4.8e-09 Score=125.73 Aligned_cols=204 Identities=16% Similarity=0.127 Sum_probs=129.0
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceeEeccCCC----------CE-EEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc
Q 001386 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG----------NV-NDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1088)
Q Consensus 408 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~----------~v-~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~ 476 (1088)
+..|.+++.++.|.-+|..+|+.+-. +..+.. .+ ..++. ++. .++.++.|+.|..+|.++|+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~---~~~~~~~~~~~~~~~~~~~~~~~~--~~g--~v~v~~~dg~l~AlDa~TG~ 142 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWK---YDPQSDRHRAGEACCDAVNRGVAV--WKG--KVYVGVLDGRLEAIDAKTGQ 142 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEE---ECCCCCGGGGGGCTTCSCCCCCEE--ETT--EEEEECTTSEEEEEETTTCC
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEE---EcCCCCccccccccccCCCCccEE--ECC--EEEEEccCCEEEEEECCCCC
Confidence 56777777888899999999976542 221111 00 11222 234 57788889999999999999
Q ss_pred eeEEeccC--CccEEEEeeee-eCCceEEEEEe------cCCeEEEEECCCCCceEEecCCC------------------
Q 001386 477 RTYSFEGH--GAPVYSLCPHA-KENIHFIFSIS------VDGKIKAWLYDSLGARVDYDAPG------------------ 529 (1088)
Q Consensus 477 ~~~~~~~~--~~~v~~~~~~~-~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~------------------ 529 (1088)
.+..+... ......+...| -.++. ++.++ .+|.|..||.++++.+..+....
T Consensus 143 ~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~ 221 (689)
T 1yiq_A 143 RAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKT 221 (689)
T ss_dssp EEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTT
T ss_pred EeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccc
Confidence 99877542 11101110000 01333 44443 37899999999999877654210
Q ss_pred -------------CceEEEEEccCCCEEEEEeeCCC-----------Cc----eeEEEEeCCCCceeEEEecccc-----
Q 001386 530 -------------LGCTRMAYSANGRRLFSCGTSKE-----------GE----SFLVEWNESEGAIKRTYQGLQL----- 576 (1088)
Q Consensus 530 -------------~~v~~~~~s~~g~~l~~~~~~~~-----------~~----~~i~iwd~~~~~~~~~~~~~~~----- 576 (1088)
.....++++|++..++++..++. ++ ..|..+|..+|+.+-.++....
T Consensus 222 ~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~ 301 (689)
T 1yiq_A 222 WFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDY 301 (689)
T ss_dssp CCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCC
T ss_pred cCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccc
Confidence 01125788999888888764321 01 1499999999999888765320
Q ss_pred -ccccEEEEEEeCCCC---EEEEEeCCCcEEEEEcCCCeeeEEEeCC
Q 001386 577 -QHNSVSVVHFDTAKD---QILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1088)
Q Consensus 577 -~~~~v~~~~~~~~~~---~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1088)
....+.......+|+ .++.++.+|.++++|..+|+.+......
T Consensus 302 ~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~ 348 (689)
T 1yiq_A 302 TATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIV 348 (689)
T ss_dssp CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESS
T ss_pred cCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccc
Confidence 011222223333554 7888999999999999999999776643
No 233
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.16 E-value=3.6e-08 Score=109.94 Aligned_cols=151 Identities=15% Similarity=0.069 Sum_probs=99.7
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeccCC---------ccEEE-EeeeeeCCceEEEEEecCCeEEEEECCCCCceEEec
Q 001386 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHG---------APVYS-LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 526 (1088)
Q Consensus 457 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~---------~~v~~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 526 (1088)
.++.++.++.|..+|.++|+.+..+.... ..+.+ ... ++..++.++.++.|..+|.++++......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV----SGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE----eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 57778889999999999999987765421 22222 222 23478888999999999999998877665
Q ss_pred CCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEecccccc--ccEEEEEEeCCCCEEEEEeCCCcEEE
Q 001386 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKI 604 (1088)
Q Consensus 527 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~s~dg~i~i 604 (1088)
............ +..+++++. ++.|+.+|..+|+.+..+....... ......... +..+++++.++.+..
T Consensus 131 ~~~~~~~~p~~~--~~~v~v~~~----~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 131 VAGEALSRPVVS--DGLVLIHTS----NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA 202 (376)
T ss_dssp CSSCCCSCCEEE--TTEEEEECT----TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred CCCceEcCCEEE--CCEEEEEcC----CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence 543322112222 345555543 5569999999999887766533000 000111222 457888888999999
Q ss_pred EEcCCCeeeEEEeCC
Q 001386 605 WDMNKVQLLTTIDAG 619 (1088)
Q Consensus 605 wd~~~~~~~~~~~~~ 619 (1088)
+|..+|+.+......
T Consensus 203 ~d~~tG~~~w~~~~~ 217 (376)
T 3q7m_A 203 VLMEQGQMIWQQRIS 217 (376)
T ss_dssp EETTTCCEEEEEECC
T ss_pred EECCCCcEEEEEecc
Confidence 999999988777643
No 234
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.14 E-value=2.4e-08 Score=108.45 Aligned_cols=225 Identities=13% Similarity=0.029 Sum_probs=146.3
Q ss_pred eEEEEECCCCC-EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce
Q 001386 399 VNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1088)
Q Consensus 399 V~~l~~s~dg~-~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~ 477 (1088)
..+.+|+|++. ++++...++.|.+||..+++.. .+ .+...+.+++|+++|+ ++++. .+ .|.+||..+++.
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~----~~-~~~~~v~~i~~~~dg~--l~v~~-~~-gl~~~d~~~g~~ 121 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT----VH-ALPFMGSALAKISDSK--QLIAS-DD-GLFLRDTATGVL 121 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE----EE-ECSSCEEEEEEEETTE--EEEEE-TT-EEEEEETTTCCE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE----EE-ECCCcceEEEEeCCCe--EEEEE-CC-CEEEEECCCCcE
Confidence 45688999755 5556567789999999887532 12 2346799999999998 45543 34 499999988876
Q ss_pred eEEecc----CCccEEEEeeeeeCCceEEEEEec------CCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001386 478 TYSFEG----HGAPVYSLCPHAKENIHFIFSISV------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1088)
Q Consensus 478 ~~~~~~----~~~~v~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 547 (1088)
...... ....+..+++ +++|.++++... .+.|..++ +++ ...+.........++|+|||+.++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~i~~--d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~-~~~~~~~~~~~~~i~~s~dg~~lyv~ 196 (326)
T 2ghs_A 122 TLHAELESDLPGNRSNDGRM--HPSGALWIGTMGRKAETGAGSIYHVA--KGK-VTKLFADISIPNSICFSPDGTTGYFV 196 (326)
T ss_dssp EEEECSSTTCTTEEEEEEEE--CTTSCEEEEEEETTCCTTCEEEEEEE--TTE-EEEEEEEESSEEEEEECTTSCEEEEE
T ss_pred EEEeeCCCCCCCCCCCCEEE--CCCCCEEEEeCCCcCCCCceEEEEEe--CCc-EEEeeCCCcccCCeEEcCCCCEEEEE
Confidence 433221 1235777877 456666665442 24455555 332 22222222346789999999988776
Q ss_pred eeCCCCceeEEEEeCC--CC-cee--EEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCC
Q 001386 548 GTSKEGESFLVEWNES--EG-AIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 622 (1088)
Q Consensus 548 ~~~~~~~~~i~iwd~~--~~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~ 622 (1088)
.. ..+.|.+|+.. ++ ... +.+............+++.++|...++...++.|.+||. +++.+..+..+.
T Consensus 197 ~~---~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~-- 270 (326)
T 2ghs_A 197 DT---KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPG-- 270 (326)
T ss_dssp ET---TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSC--
T ss_pred EC---CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCC--
Confidence 42 24569999975 55 321 222211111245778999999987777777789999998 677777776543
Q ss_pred CCCceEEEe-cCCCEEEEEeCC
Q 001386 623 PENPRICFN-KNGTLLAVIANE 643 (1088)
Q Consensus 623 ~~v~~v~~s-~~~~~l~~~~~d 643 (1088)
..+.+++|+ ++++.|++++..
T Consensus 271 ~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 271 KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp SBEEEEEEESTTSCEEEEEEBC
T ss_pred CCcEEEEEecCCCCEEEEEecC
Confidence 247899998 888777665543
No 235
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.14 E-value=8e-09 Score=123.82 Aligned_cols=194 Identities=15% Similarity=0.173 Sum_probs=131.9
Q ss_pred CCcEEEEEcCCceeEEEecCCC-------------------------------CCeEEEEEcCCCCcEEEEEeCCCe---
Q 001386 818 GGVISLYIVMTFKTILTIMPPS-------------------------------PTATSLAFNPHDNNVIAIGMDDST--- 863 (1088)
Q Consensus 818 dg~i~iwd~~~~~~~~~~~~~~-------------------------------~~i~~l~~sp~d~~~lasg~~dg~--- 863 (1088)
++.|..||..+|+.+..+.... ..-..++++| +..++++++.++.
T Consensus 182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~ 260 (689)
T 1yiq_A 182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWD 260 (689)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccc
Confidence 4678888888888776654210 0112578998 6778888888764
Q ss_pred ----------------EEEEEcCCceeeeeecc--cc-------CCeeEEEECCCCC---EEEEEeCCCcEEEEEcCCCc
Q 001386 864 ----------------ILIYNARSSEVISKLEG--HS-------KRVTGLVFSDALN---ILVSSGGDAQIFVWDVDGWG 915 (1088)
Q Consensus 864 ----------------i~lwd~~~~~~~~~l~~--h~-------~~V~~l~~s~dg~---~las~s~Dg~i~iwd~~~~~ 915 (1088)
|..+|..+|+.+..++. |. .++.......+|+ .++.++.+|.++++|..+|+
T Consensus 261 ~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 340 (689)
T 1yiq_A 261 PKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE 340 (689)
T ss_dssp HHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence 99999999999887754 32 1222222223665 78889999999999999988
Q ss_pred eeeeeeeec------------------------CCCC-----cc-CC-CCeEEEEEcCCCCEEEEE-e------------
Q 001386 916 IQTCRSLQT------------------------PDGV-----MT-LA-PSETHIQFHKDQTRFLLV-H------------ 951 (1088)
Q Consensus 916 ~~~~~~~~~------------------------~~~~-----~~-~~-~~v~~~~fs~dg~~l~~~-~------------ 951 (1088)
......+.. ..+. .. .. ..-..++|+|+..++.+. .
T Consensus 341 ~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~ 420 (689)
T 1yiq_A 341 LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEA 420 (689)
T ss_dssp EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSC
T ss_pred EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccc
Confidence 542211110 0000 00 00 012247899998887763 1
Q ss_pred ---------------------------------CCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcE
Q 001386 952 ---------------------------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL 998 (1088)
Q Consensus 952 ---------------------------------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v 998 (1088)
++.|+.||+.+|+.+.+... ..++..-.++..|..+++++.||.+
T Consensus 421 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~g~~~tagglvf~gt~dg~l 498 (689)
T 1yiq_A 421 PKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY--VTIFNGGTLSTAGNLVFEGSADGRV 498 (689)
T ss_dssp CCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEE
T ss_pred ccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC--CCCccCccceECCCEEEEECCCCcE
Confidence 36799999999998877543 2333344677788899999999999
Q ss_pred EEEEcCCCceEEEecc
Q 001386 999 SIHEASNLEVQCRILS 1014 (1088)
Q Consensus 999 ~vwd~~~~~~~~~~~~ 1014 (1088)
+.||..+|+.+.++..
T Consensus 499 ~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 499 IAYAADTGEKLWEQPA 514 (689)
T ss_dssp EEEETTTCCEEEEEEC
T ss_pred EEEECCCCccceeeeC
Confidence 9999999999988863
No 236
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.14 E-value=8e-09 Score=111.25 Aligned_cols=235 Identities=14% Similarity=0.070 Sum_probs=153.6
Q ss_pred cCCCCCeEEEEECCCCC-EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001386 393 RDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1088)
Q Consensus 393 ~~h~~~V~~l~~s~dg~-~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd 471 (1088)
..........+|+|+|+ +++++..++.|..|+. +++ .. .+..+...+..++++++|+ ++++...++.|.+||
T Consensus 41 ~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 41 YDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSD 113 (305)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEEC
T ss_pred ecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEEC
Confidence 33556678899999998 5566667889999998 443 22 3445667899999999998 566555567899999
Q ss_pred CCCCceeEEeccC----CccEEEEeeeeeCCceEEEE----Eec-------------CCeEEEEECCCCCceEEecCCCC
Q 001386 472 AVTGSRTYSFEGH----GAPVYSLCPHAKENIHFIFS----ISV-------------DGKIKAWLYDSLGARVDYDAPGL 530 (1088)
Q Consensus 472 ~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~ 530 (1088)
.. |+........ ...++.+++ +++|.+.++ |.. .+.|..||..+++..... ...
T Consensus 114 ~~-g~~~~~~~~~~~~~~~~~~~i~~--d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~ 188 (305)
T 3dr2_A 114 AD-GQAHLLVGRYAGKRLNSPNDLIV--ARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD 188 (305)
T ss_dssp TT-SCEEEEECEETTEECSCCCCEEE--CTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES
T ss_pred CC-CCEEEEEeccCCCccCCCCCEEE--CCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC
Confidence 75 6543222111 123456666 457777776 321 245777776555544333 334
Q ss_pred ceEEEEEccCCCEEEEEeeCC--CCceeEEEEeCCCCcee--EEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001386 531 GCTRMAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606 (1088)
Q Consensus 531 ~v~~~~~s~~g~~l~~~~~~~--~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd 606 (1088)
....++|+||++.|+++.... .+...|++|++..+... ..+... .......+++.++|+. .+++.+ .|.+|+
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~--~~~~pdgi~~d~~G~l-wv~~~~-gv~~~~ 264 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV--PDGLPDGFCVDRGGWL-WSSSGT-GVCVFD 264 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC--SSSCCCSEEECTTSCE-EECCSS-EEEEEC
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC--CCCCCCeEEECCCCCE-EEecCC-cEEEEC
Confidence 567899999999888775421 01256999998765421 111111 1234567889999984 444444 499999
Q ss_pred cCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEE
Q 001386 607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1088)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1088)
. +++.+..+.... .+.+++|+++++.|.+++.++..+
T Consensus 265 ~-~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 265 S-DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp T-TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEEEE
T ss_pred C-CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 8 577777776554 378899999998888888764333
No 237
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.13 E-value=1.7e-08 Score=109.37 Aligned_cols=237 Identities=12% Similarity=0.062 Sum_probs=152.7
Q ss_pred cCCceEEEec-cccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe-C---
Q 001386 744 NGGQAIFALA-SNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-G--- 818 (1088)
Q Consensus 744 ~~g~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-d--- 818 (1088)
.++++|++.+ .++.|.++|+..... .+++-++.....+.. . ........+.++|+| +++++. +
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~------~p~~~k~ie~~~~~~-~----~g~s~Ph~~~~~pdG-i~Vs~~g~~~g 160 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPR------EPKIIKVIEPEEVKK-V----SGYSRLHTVHCGPDA-IYISALGNEEG 160 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTT------SCEEEEEECHHHHHH-H----HCEEEEEEEEECSSC-EEEEEEEETTS
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCC------Cceeeeeechhhccc-c----cCCCcccceeECCCe-EEEEcCCCcCC
Confidence 7788776654 578999999754432 112111110000000 0 011134567889999 666553 3
Q ss_pred ---CcEEEEEcCCceeEEEecCCCC---CeEEEEEcCCCCcEEEEEe-------------------CCCeEEEEEcCCce
Q 001386 819 ---GVISLYIVMTFKTILTIMPPSP---TATSLAFNPHDNNVIAIGM-------------------DDSTILIYNARSSE 873 (1088)
Q Consensus 819 ---g~i~iwd~~~~~~~~~~~~~~~---~i~~l~~sp~d~~~lasg~-------------------~dg~i~lwd~~~~~ 873 (1088)
|.|.++|.++++.+.++..... ....+.|+| +++.+++.. .+.+|.+||+.+++
T Consensus 161 ~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k 239 (462)
T 2ece_A 161 EGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK 239 (462)
T ss_dssp CSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE
T ss_pred CCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc
Confidence 6799999999999998863322 234588899 788888774 36899999999998
Q ss_pred eeeeeccc-c-CCeeEEEE--CCCCCEEEEEe------CCCcEEEEEcCCCceeeeeeeecCCCCcc------------C
Q 001386 874 VISKLEGH-S-KRVTGLVF--SDALNILVSSG------GDAQIFVWDVDGWGIQTCRSLQTPDGVMT------------L 931 (1088)
Q Consensus 874 ~~~~l~~h-~-~~V~~l~~--s~dg~~las~s------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~------------~ 931 (1088)
.+.++..- . .....+.| +|+++++..++ .+++|.+|..+.+.......+........ .
T Consensus 240 ~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~ 319 (462)
T 2ece_A 240 RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV 319 (462)
T ss_dssp EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence 88877642 1 23445655 99999988776 56789888877655333333221111000 0
Q ss_pred CCCeEEEEEcCCCCEEEEE--eCCeEEEEEcCc---ceeeeeeecC-------C------CcCEEEEEEeeCCCEEEEEe
Q 001386 932 APSETHIQFHKDQTRFLLV--HETHLAIYEAEE---LTCLKQWFPI-------S------SVPISQATFSCDCRMVFTSF 993 (1088)
Q Consensus 932 ~~~v~~~~fs~dg~~l~~~--~d~~i~vwd~~~---~~~~~~~~~~-------h------~~~v~~l~fs~dg~~l~s~s 993 (1088)
......+.+|+||++|.++ ..+.|.+||+.. .+.+..+..+ | .+....+++||||++|+++.
T Consensus 320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 1347889999999999996 457899999863 3455554433 1 01367899999999999887
No 238
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.11 E-value=4.7e-08 Score=105.90 Aligned_cols=230 Identities=14% Similarity=0.114 Sum_probs=151.4
Q ss_pred cCCCEEEEEe--CCcEEEEEcCCc----eeEEEec-------CCCCCeEEEEEcCCCCcEEEEEeCC------CeEEEEE
Q 001386 808 KNDAYLFSAS--GGVISLYIVMTF----KTILTIM-------PPSPTATSLAFNPHDNNVIAIGMDD------STILIYN 868 (1088)
Q Consensus 808 ~dg~~l~~~~--dg~i~iwd~~~~----~~~~~~~-------~~~~~i~~l~~sp~d~~~lasg~~d------g~i~lwd 868 (1088)
+++++|++.+ +++|.++|+.+. +...++. ........+.++| ++ ++++...+ |.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEE
Confidence 7899998887 788999999765 6666663 1112456788999 77 66665555 7899999
Q ss_pred cCCceeeeeeccccC---CeeEEEECCCCCEEEEEe-------------------CCCcEEEEEcCCCceeeeeeeecCC
Q 001386 869 ARSSEVISKLEGHSK---RVTGLVFSDALNILVSSG-------------------GDAQIFVWDVDGWGIQTCRSLQTPD 926 (1088)
Q Consensus 869 ~~~~~~~~~l~~h~~---~V~~l~~s~dg~~las~s-------------------~Dg~i~iwd~~~~~~~~~~~~~~~~ 926 (1088)
..+++.+.++..-.+ --+.+.|+|+++.+++.. .+.+|.+||+.+++... .+....
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~--tI~vg~ 248 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH--SLTLGE 248 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE--EEESCT
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee--EEecCC
Confidence 999999998863322 234688999999988874 36889999999864332 233321
Q ss_pred CCccCCCCeEEEEE--cCCCCEEEEE-------eCCeEEEEEcCcceeeeee---ecC----------------CCcCEE
Q 001386 927 GVMTLAPSETHIQF--HKDQTRFLLV-------HETHLAIYEAEELTCLKQW---FPI----------------SSVPIS 978 (1088)
Q Consensus 927 ~~~~~~~~v~~~~f--s~dg~~l~~~-------~d~~i~vwd~~~~~~~~~~---~~~----------------h~~~v~ 978 (1088)
... ....+.| +|+++++.++ -+++|.+|....|+..... ... -.....
T Consensus 249 ~g~----~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 249 ENR----MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp TEE----EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred CCC----ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 111 2456656 9999988873 3457877665544321110 000 024578
Q ss_pred EEEEeeCCCEEEEEeC-CCcEEEEEcCC---CceEEEeccccccCCC--Cccc--cccceEEEECCCCCCEEEEEe
Q 001386 979 QATFSCDCRMVFTSFV-DGTLSIHEASN---LEVQCRILSTAYLRPT--TSCL--HVYPHAIAAHPLKPTQFAVGL 1046 (1088)
Q Consensus 979 ~l~fs~dg~~l~s~s~-dg~v~vwd~~~---~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~p~d~~~l~~~~ 1046 (1088)
.+.+|+||++|.++.. .+.|.++|+.. .+++..+......... +.+. ...|..++++| ||+.|+++.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEEc
Confidence 8999999999987764 68999999863 3555555433110000 0000 12467799999 899999888
No 239
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.05 E-value=3.1e-08 Score=111.41 Aligned_cols=329 Identities=12% Similarity=0.051 Sum_probs=200.0
Q ss_pred cEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEe----------cCCe-EEEEECCCCCceE
Q 001386 455 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------VDGK-IKAWLYDSLGARV 523 (1088)
Q Consensus 455 ~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~dg~-i~iwd~~~~~~~~ 523 (1088)
++.+.||+..|.++|+-+.+++.+..+......-. .-|-.++..+.++..+ .+|. ...|
T Consensus 15 ~~~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~-~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~--------- 84 (595)
T 1fwx_A 15 YYGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSA-TGWGQTNESVRIHERTMSERTKKFLAANGKRIHDN--------- 84 (595)
T ss_dssp EEEEECCBTTCEEEEEEETTCCEEEEEESSSCCTT-TCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCC---------
T ss_pred EEEEeeCCcCceEEEEecCCcceEEEeeeecCCCC-cccCCchhHHHHHhccCCccchhhhhccCceeccc---------
Confidence 34688899999999999999999988753211000 0000000000011000 0110 0000
Q ss_pred EecCCCCceEEEEE---ccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEE-e-CCCCEEEEEe-
Q 001386 524 DYDAPGLGCTRMAY---SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-D-TAKDQILAAG- 597 (1088)
Q Consensus 524 ~~~~~~~~v~~~~~---s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~s- 597 (1088)
+.. .-..+++ .+||++++++.. .+..|.+.|+.+.++.+.+.-.. ......+++ + |+++++++++
T Consensus 85 ---gd~-hh~~~s~t~g~~DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~--g~~phg~~~~~~p~~~~v~~~~~ 155 (595)
T 1fwx_A 85 ---GDL-HHVHMSFTEGKYDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPN--AKGIHGLRPQKWPRSNYVFCNGE 155 (595)
T ss_dssp ---CCB-CCEEEEEETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSS--CCSEEEEEECCSSBCSEEEEEEC
T ss_pred ---CCC-CccccCCCCCCcCCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCC--CCCCcceeeeecCCCcEEEEecc
Confidence 000 1122333 348999998653 35679999999999888665332 245778887 5 9999999985
Q ss_pred -----------------CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCc---------------
Q 001386 598 -----------------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR--------------- 645 (1088)
Q Consensus 598 -----------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~--------------- 645 (1088)
.++.+.+.|..+.+...++...+. -..++++|+|+++++.+.+..
T Consensus 156 ~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~ 232 (595)
T 1fwx_A 156 DETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDH 232 (595)
T ss_dssp SCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEE
T ss_pred cccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCcccCcchhhccccccce
Confidence 245799999999999999886542 356899999999999886531
Q ss_pred EEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccCCCccee
Q 001386 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 725 (1088)
Q Consensus 646 i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~ 725 (1088)
+.+.+.....
T Consensus 233 v~V~~~~~~~---------------------------------------------------------------------- 242 (595)
T 1fwx_A 233 IVVFNIAEIE---------------------------------------------------------------------- 242 (595)
T ss_dssp EEEEEHHHHH----------------------------------------------------------------------
T ss_pred EEEeecccee----------------------------------------------------------------------
Confidence 2222211000
Q ss_pred eecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCc-ceeeccCCCCCCCCeeEE
Q 001386 726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQ-FMVNDTTDSNSQEAVPCF 804 (1088)
Q Consensus 726 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~ 804 (1088)
++.++|++... +.|.+.|....+ +.. +.... -.....++
T Consensus 243 ---------------~~v~~Gk~~~i----~~V~VID~~~~~----------------~~~~~~~Ip-----vg~~PhGv 282 (595)
T 1fwx_A 243 ---------------KAIAAGDYQEL----NGVKVVDGRKEA----------------SSLFTRYIP-----IANNPHGC 282 (595)
T ss_dssp ---------------HHHHHTCSEEE----TTEEEEECSGGG----------------CCSSEEEEE-----EESSCCCE
T ss_pred ---------------EeccCCCeeEE----CcEEEEeCcccC----------------CceeEEEEe-----cCCCceEE
Confidence 01111211111 224444432200 111 11111 12345578
Q ss_pred EEecCCCEEEEEe--CCcEEEEEcCCce------------eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcC
Q 001386 805 ALSKNDAYLFSAS--GGVISLYIVMTFK------------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR 870 (1088)
Q Consensus 805 ~~s~dg~~l~~~~--dg~i~iwd~~~~~------------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~ 870 (1088)
.++|||+++++++ +++|.++|+.+.+ ....+. -......++|+| +|...++..-|++|.+||+.
T Consensus 283 ~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~ 360 (595)
T 1fwx_A 283 NMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIE 360 (595)
T ss_dssp EECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHH
T ss_pred EEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhh
Confidence 9999999999887 6889999999763 233332 345678999999 77666778889999999998
Q ss_pred C----------ceeeeeeccccCCe-----eEEEECCCCCEEEEEe---CCCc----------EEEEEcCCCcee
Q 001386 871 S----------SEVISKLEGHSKRV-----TGLVFSDALNILVSSG---GDAQ----------IFVWDVDGWGIQ 917 (1088)
Q Consensus 871 ~----------~~~~~~l~~h~~~V-----~~l~~s~dg~~las~s---~Dg~----------i~iwd~~~~~~~ 917 (1088)
+ .+.+.++..|-.+- .+++++|||++|+++. .|+. -.++|+++++..
T Consensus 361 ~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 361 DAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp HHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCE
T ss_pred HhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEE
Confidence 7 45667776554321 2345689999999875 3553 288999766533
No 240
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.04 E-value=6.1e-09 Score=113.91 Aligned_cols=301 Identities=11% Similarity=0.054 Sum_probs=177.6
Q ss_pred EEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEe
Q 001386 446 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1088)
Q Consensus 446 ~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 525 (1088)
+.....++. +..++.++.|..|| .+++.+..+..+...+.++.. ..++. +..++.+ |..+|. +++....+
T Consensus 24 ~~~~d~~g~---l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~--~~~g~-l~v~t~~--l~~~d~-~g~~~~~~ 93 (330)
T 3hxj_A 24 SPILAKNGT---IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSI--GKDGT-IYFGSDK--VYAINP-DGTEKWRF 93 (330)
T ss_dssp CCEECTTSC---EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEE--TTTTE-ECCSSCE--EEEECC-CGGGGGGS
T ss_pred CceEccCCe---EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEE--ecCCc-EEEecCc--EEEECC-CCcEEEEE
Confidence 344555665 66677888999999 888887665544444455544 33544 4445444 777875 33333333
Q ss_pred cCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEE
Q 001386 526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 605 (1088)
Q Consensus 526 ~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iw 605 (1088)
...........+. +..+.+++. ++.+..+|.. ++......... ..+.++...+++. ++.++.++.|..+
T Consensus 94 ~~~~~~~~~~~~~--~~~l~v~t~----~~~l~~~d~~-g~~~~~~~~~~---~~~~~~~~~~~g~-l~vgt~~~~l~~~ 162 (330)
T 3hxj_A 94 DTKKAIVSDFTIF--EDILYVTSM----DGHLYAINTD-GTEKWRFKTKK---AIYATPIVSEDGT-IYVGSNDNYLYAI 162 (330)
T ss_dssp CC-----CCEEEE--TTEEEEECT----TSEEEEECTT-SCEEEEEECSS---CCCSCCEECTTSC-EEEECTTSEEEEE
T ss_pred ECCCCcccCceEE--CCEEEEEec----CCEEEEEcCC-CCEEEEEcCCC---ceeeeeEEcCCCE-EEEEcCCCEEEEE
Confidence 2222222223333 445555543 4458999988 77666655443 4455566666665 6667788999999
Q ss_pred EcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccC
Q 001386 606 DMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIAN 685 (1088)
Q Consensus 606 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~ 685 (1088)
|.. ++.+..+..... .+.++...+++.+.+. + +.+..+| .+++.......
T Consensus 163 d~~-g~~~~~~~~~~~--~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~----------------------- 212 (330)
T 3hxj_A 163 NPD-GTEKWRFKTNDA--ITSAASIGKDGTIYFG-S--DKVYAIN-PDGTEKWNFYA----------------------- 212 (330)
T ss_dssp CTT-SCEEEEEECSSC--CCSCCEECTTCCEEEE-S--SSEEEEC-TTSCEEEEECC-----------------------
T ss_pred CCC-CCEeEEEecCCC--ceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcEEEEEcc-----------------------
Confidence 998 777776664432 4566777677764443 3 5666666 33221100000
Q ss_pred CceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccC
Q 001386 686 GSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR 765 (1088)
Q Consensus 686 ~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~ 765 (1088)
T Consensus 213 -------------------------------------------------------------------------------- 212 (330)
T 3hxj_A 213 -------------------------------------------------------------------------------- 212 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEE
Q 001386 766 NDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSL 845 (1088)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l 845 (1088)
....+.+++..++|.+.+...++.+..+|. +++.+..+......+.++
T Consensus 213 -------------------------------~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~ 260 (330)
T 3hxj_A 213 -------------------------------GYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSP 260 (330)
T ss_dssp -------------------------------SSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCC
T ss_pred -------------------------------CCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccc
Confidence 011233445555655555444566666653 445554444343334455
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 001386 846 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 913 (1088)
Q Consensus 846 ~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~ 913 (1088)
.+.+ ++ .|.+++.+|.|..+|. +++.+..+......+.++...++|++.+ ++.+|.+++.....
T Consensus 261 ~~~~-~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~-gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 261 VIGN-TD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYF-GTRNGKFYALFNLE 324 (330)
T ss_dssp EECT-TS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEE-ECTTSCEEEEEC--
T ss_pred eEcC-CC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEE-EcCCCeEEEEeccc
Confidence 6665 44 5667888889999995 6777776665566678888888887554 78899998887765
No 241
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.00 E-value=0.00017 Score=84.60 Aligned_cols=478 Identities=9% Similarity=-0.024 Sum_probs=241.4
Q ss_pred CCcEEEEeCCCCc-eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCc-eEEecCCCCceEEEEEccCC
Q 001386 464 DKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANG 541 (1088)
Q Consensus 464 d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g 541 (1088)
...|+..|+.... ........-.....+++++. ++.++.+-...+.|..++++.... ...+...-.....+++.+.+
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~-~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFS-HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETT-TTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeC-CCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 5678888877653 12222223345667777653 344555555678899998876532 23333333567899999988
Q ss_pred CEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeC--CCcEEEEEcCCCeeeEEEeCC
Q 001386 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKVQLLTTIDAG 619 (1088)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~--dg~i~iwd~~~~~~~~~~~~~ 619 (1088)
..|+.+.. ..+.|.+.+.............. .....+++.|.+.+|+.+.. .+.|...++...........
T Consensus 96 ~~ly~~d~---~~~~I~v~~~dG~~~~~l~~~~l---~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~- 168 (619)
T 3s94_A 96 EKLYWTDS---ETNRIEVSNLDGSLRKVLFWQEL---DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS- 168 (619)
T ss_dssp TEEEEEET---TTTEEEEEETTSCSCEEEECSSC---SCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS-
T ss_pred CEEEEEeC---CCCEEEEEECCCCCEEEEEeCCC---CCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeC-
Confidence 87777642 35679999987554333332222 45778999998776666552 46777777754333333322
Q ss_pred CCCCCCceEEEecCCCEEEEEe-CCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCC
Q 001386 620 GGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV 698 (1088)
Q Consensus 620 ~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1088)
.......+++++++..|..+. ..+.|...++..........+.......+++.. +
T Consensus 169 -~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~----------------------~- 224 (619)
T 3s94_A 169 -EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE----------------------D- 224 (619)
T ss_dssp -SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESS----------------------S-
T ss_pred -CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeC----------------------C-
Confidence 122457899999766655554 457788888875432222111111111222221 1
Q ss_pred CcccccccCccceeccccccCCCcceeeecCCccccccEEEEEE-ecCCceEE--Eec-cc---cceEEEEccCCCCCCC
Q 001386 699 KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY-NNGGQAIF--ALA-SN---GVHLMWRWPRNDLTLS 771 (1088)
Q Consensus 699 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~g~~l~--~~~-~d---g~v~iw~~~~~~~~~~ 771 (1088)
....+-...+.|...+...+.... .+ ... ......+++ .+..+... .+. .+ ..+.+-. +....
T Consensus 225 ~ly~td~~~~~V~~~d~~tg~~~~--~i-~~~---~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~-~~~~~--- 294 (619)
T 3s94_A 225 ILYWTDWSTHSILACNKYTGEGLR--EI-HSD---IFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMS-PVKPF--- 294 (619)
T ss_dssp EEEEECTTTCSEEEEESSSCCCCE--EC-CSC---CCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEEC-SSTTS---
T ss_pred EEEEecCCCCEEEEEECCCCcccE--EE-ecC---CCCCcEEEEEccccCCCccccccCCCCcccceEECC-CCCCC---
Confidence 222233333444444432221110 00 000 000111111 11110000 000 00 0000000 00000
Q ss_pred CCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEE-Eec-CCCCCeEEEEEcC
Q 001386 772 TEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL-TIM-PPSPTATSLAFNP 849 (1088)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~-~~~-~~~~~i~~l~~sp 849 (1088)
..-....|..+ .....+|. .....+|+.+..+.|+..++....... .+. ..-..+.+++|.+
T Consensus 295 -----~~C~C~~g~~l---------~~d~~~C~--~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~ 358 (619)
T 3s94_A 295 -----YQCACPTGVKL---------LENGKTCK--DGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDP 358 (619)
T ss_dssp -----EEEECCTTCCB---------CTTSSCBC--SSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEET
T ss_pred -----ceEeCCchhee---------cccCcccC--CCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEc
Confidence 00000001000 01111111 112346777777788888887653221 121 1234678999998
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCC
Q 001386 850 HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV 928 (1088)
Q Consensus 850 ~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~-~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 928 (1088)
.++.++.+-...+.|+.+++........+...-.....+++.+.++ +.++-+..+.|.+.++++.... .+.. .+
T Consensus 359 ~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~---~l~~-~~- 433 (619)
T 3s94_A 359 VEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRK---ILIS-ED- 433 (619)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEEC-TT-
T ss_pred CCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEE---EEEE-CC-
Confidence 5565555555678999999876443333333335678899987554 4555556788999998864321 1111 11
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEe---CCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEe-CCCcEEEEEcC
Q 001386 929 MTLAPSETHIQFHKDQTRFLLVH---ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEAS 1004 (1088)
Q Consensus 929 ~~~~~~v~~~~fs~dg~~l~~~~---d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s-~dg~v~vwd~~ 1004 (1088)
. .....+++.|...+|..+. ...|...++. |.....+....-.....+++++++..|..+. ..+.|...++.
T Consensus 434 l---~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~d 509 (619)
T 3s94_A 434 L---EEPRAIVLDPMVGYMYWTDWGEIPKIERAALD-GSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTD 509 (619)
T ss_dssp C---CSEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESS
T ss_pred C---CCeeeEEEEcCCCcEEEecCCCCCEEEEEccC-CCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecC
Confidence 1 2478999999754554432 3567766665 3333333434456788999999877777665 44778889986
Q ss_pred CCce
Q 001386 1005 NLEV 1008 (1088)
Q Consensus 1005 ~~~~ 1008 (1088)
....
T Consensus 510 G~~~ 513 (619)
T 3s94_A 510 GTGR 513 (619)
T ss_dssp SCCC
T ss_pred CCce
Confidence 5543
No 242
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.99 E-value=0.00019 Score=84.36 Aligned_cols=533 Identities=8% Similarity=-0.016 Sum_probs=280.2
Q ss_pred EEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE-eCCCEEEEEEccC
Q 001386 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHG 427 (1088)
Q Consensus 349 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~-~~dg~i~vwd~~~ 427 (1088)
|+.+ ....|+.-++.+.......+ + ..-..+..++|++++..|..+ ..++.|..+++..
T Consensus 9 Ll~s--~~~~I~~i~l~~~~~~~~~~-----------------~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g 68 (628)
T 4a0p_A 9 LLFS--RRADIRRISLETNNNNVAIP-----------------L-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNG 68 (628)
T ss_dssp EEEE--ETTEEEEEESSCTTCEEECC-----------------C-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEE--eCCcEEEEECCCCCcceEEE-----------------c-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCC
Confidence 4444 33788888887654322111 1 123468899999966665544 5678899999876
Q ss_pred CCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEE-e
Q 001386 428 GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-S 506 (1088)
Q Consensus 428 ~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~ 506 (1088)
... .. .+.........+++.+.+.. +.++-...+.|.+.++........+...-.....+++.|. +|.++.+- +
T Consensus 69 ~~~-~~--v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G~lY~tD~g 143 (628)
T 4a0p_A 69 SAL-EH--VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EGFMYWTEWG 143 (628)
T ss_dssp CSC-EE--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TTEEEEEECS
T ss_pred CCc-EE--EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CCeEEEeCCC
Confidence 532 21 22222245678899877665 4555666788999997654432223233445678888553 34444443 2
Q ss_pred cCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEE
Q 001386 507 VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF 586 (1088)
Q Consensus 507 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 586 (1088)
..+.|...+++......... .......+++++++..|+.+-. +...|...|+..... +.+.... .....+++
T Consensus 144 ~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l---~~P~glav 215 (628)
T 4a0p_A 144 GKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDL---PHPFGLTQ 215 (628)
T ss_dssp SSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECC---SCEEEEEE
T ss_pred CCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccC---CCceEEEE
Confidence 35678888887665544443 4456789999999888887753 355788899875444 3333322 34567777
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEE-EecCCCEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 001386 587 DTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC-FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSD 665 (1088)
Q Consensus 587 ~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~-~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 665 (1088)
.. +..+++-...+.|...|..+|+....+..... ....+. +++..+. + ...+.. ...
T Consensus 216 ~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~--~p~~i~v~~~~~q~---~------------~n~C~~----~ng 273 (628)
T 4a0p_A 216 YQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLD--YVMDILVFHSSRQS---G------------WNECAS----SNG 273 (628)
T ss_dssp ET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCC--SCCEEEEECGGGSC---C------------CCTTTT----TGG
T ss_pred EC-CEEEEecCCCCEEEEEECCCCCceEEEecCCC--Ccceeeeeeecccc---c------------ceEecc----CCC
Confidence 64 34444444578899999888876666653321 223332 2221110 0 000000 000
Q ss_pred cceeeeecCC-CcceeccccCCceee-cCCC-CCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEE
Q 001386 666 NLRKLSVNPI-STVTGAGIANGSVSV-NEDP-KEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY 742 (1088)
Q Consensus 666 ~v~~~~~~p~-~~~~~~~~~~~~~~~-~~~~-~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 742 (1088)
....+++... +... ..+..|.... .+.. .+...+++.+. ...|+-..+..... ....++. .....+..++|
T Consensus 274 ~C~~~C~~~~~~~~~-C~C~~g~~l~~d~~~C~~~~~~Ll~s~-~~~i~~i~l~~~~~---~~~~l~~-~~~~~~~~ld~ 347 (628)
T 4a0p_A 274 HCSHLCLAVPVGGFV-CGCPAHYSLNADNRTCSAPTTFLLFSQ-KSAINRMVIDEQQS---PDIILPI-HSLRNVRAIDY 347 (628)
T ss_dssp GCSSEEEEETTTEEE-EECSTTCEECTTSSCEECCSSEEEEEE-TTEEEEECCCTTCC---CCEECCC-TTCSCEEEEEE
T ss_pred CcchhhhcCCCCCee-EEcCCCcEecccCCcCccccceeeeec-cceEEEEecccccC---ceEEEEe-hhcCCceEEEE
Confidence 0001111100 1000 0011110000 0000 00112222222 23343333321111 0111121 12345778999
Q ss_pred ecCCceEEEec-cccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEe--CC
Q 001386 743 NNGGQAIFALA-SNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GG 819 (1088)
Q Consensus 743 s~~g~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--dg 819 (1088)
.+....|+.+. ..+.|+.++.+.... ..+.............+..+++...+..|..+. .+
T Consensus 348 d~~~~~iy~sD~~~~~I~r~~~~g~~~----------------~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~ 411 (628)
T 4a0p_A 348 DPLDKQLYWIDSRQNMIRKAQEDGSQG----------------FTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATN 411 (628)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSC----------------EEEEC--------CCCEEEEEEETTTTEEEEEETTTT
T ss_pred ecCCCeEEEEecCcceEEEEEcCCCCc----------------eEEEEcccccccccCCcceEEeeccCCeEEEEcCCCC
Confidence 88766665554 356666665432211 001100000001234678999999888777665 57
Q ss_pred cEEEEEcCCceeEEEe-cCCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEEcCCceeeeeeccccCCeeEEEECCCCCE
Q 001386 820 VISLYIVMTFKTILTI-MPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVISKLEGHSKRVTGLVFSDALNI 896 (1088)
Q Consensus 820 ~i~iwd~~~~~~~~~~-~~~~~~i~~l~~sp~d~~~lasg~~dg--~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~ 896 (1088)
.|.+.++. |+....+ ........++++.|..+.++.+-.... .|...++............-...+.|++.++++.
T Consensus 412 ~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~ 490 (628)
T 4a0p_A 412 VINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGK 490 (628)
T ss_dssp EEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTE
T ss_pred EEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCE
Confidence 79999986 4444444 334567899999995565555543333 5777776533222222323445789999998777
Q ss_pred EEEEe-CCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcceeeee
Q 001386 897 LVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQ 968 (1088)
Q Consensus 897 las~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~ 968 (1088)
|..+. ..+.|...+++..... .+.. +.. .....+++.. +....+ ...+.|...|..+|+....
T Consensus 491 LYw~D~~~~~I~~~~~dG~~r~---~~~~--~~~---~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~ 555 (628)
T 4a0p_A 491 LFWADSDLRRIESSDLSGANRI---VLED--SNI---LQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTK 555 (628)
T ss_dssp EEEEETTTTEEEEEETTSCSCE---EEEC--SSC---SCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEE
T ss_pred EEEEeCCCCEEEEEeCCCCceE---EEEc--CCC---CCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEE
Confidence 76664 4578999998764322 1111 111 1345676654 333333 3445677777776665444
No 243
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.98 E-value=1.8e-08 Score=110.20 Aligned_cols=268 Identities=12% Similarity=0.062 Sum_probs=171.3
Q ss_pred eeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCC
Q 001386 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417 (1088)
Q Consensus 338 ~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~d 417 (1088)
.+..+..+|. +..++.++.|..|| .+|+.+.... .+...+.++...++|...+ ++.+
T Consensus 23 ~~~~~d~~g~--l~v~t~~~~l~~~d-~~g~~~~~~~-------------------~~~~~~~~~~~~~~g~l~v-~t~~ 79 (330)
T 3hxj_A 23 SSPILAKNGT--IYLGSSNKNLYAIN-TDGSVKWFFK-------------------SGEIIECRPSIGKDGTIYF-GSDK 79 (330)
T ss_dssp CCCEECTTSC--EECSSTTTTTEEEC-TTSCEEESSC-------------------GGGEEEECCEETTTTEECC-SSCE
T ss_pred cCceEccCCe--EEEEcCCCEEEEEC-CCCcEEEEEe-------------------cCCCcccceEEecCCcEEE-ecCc
Confidence 4556667776 45667788999999 8887654311 1234456777777776444 4444
Q ss_pred CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeC
Q 001386 418 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 497 (1088)
Q Consensus 418 g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 497 (1088)
|..+|. +++.+.. +...........+. ++ .+..++.++.|..+|.. |+.......+...+.++.. .+
T Consensus 80 --l~~~d~-~g~~~~~---~~~~~~~~~~~~~~-~~---~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~--~~ 146 (330)
T 3hxj_A 80 --VYAINP-DGTEKWR---FDTKKAIVSDFTIF-ED---ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIV--SE 146 (330)
T ss_dssp --EEEECC-CGGGGGG---SCC-----CCEEEE-TT---EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE--CT
T ss_pred --EEEECC-CCcEEEE---EECCCCcccCceEE-CC---EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEE--cC
Confidence 888886 5554432 22222222233333 44 46778888999999988 8877776655544444444 33
Q ss_pred CceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccc
Q 001386 498 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577 (1088)
Q Consensus 498 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~ 577 (1088)
++ .+..++.++.|..+|.. +............+.++.+.+++...+.. +.+..+| .+++....+....
T Consensus 147 ~g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t-------~~l~~~d-~~g~~~~~~~~~~-- 214 (330)
T 3hxj_A 147 DG-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS-------DKVYAIN-PDGTEKWNFYAGY-- 214 (330)
T ss_dssp TS-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES-------SSEEEEC-TTSCEEEEECCSS--
T ss_pred CC-EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe-------CEEEEEC-CCCcEEEEEccCC--
Confidence 44 46678888999999988 66666666555567777887888765543 2399999 7777766655433
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCCCCcc
Q 001386 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 657 (1088)
Q Consensus 578 ~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 657 (1088)
..+.++...+++ .+..++.++.+..+|. +++.+..+..... .+..+.+.+++ .|.+++.+|.+..+|. +++..
T Consensus 215 -~~~~~~~~~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~ 287 (330)
T 3hxj_A 215 -WTVTRPAISEDG-TIYVTSLDGHLYAINP-DGTEKWRFKTGKR--IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEK 287 (330)
T ss_dssp -CCCSCCEECTTS-CEEEEETTTEEEEECT-TSCEEEEEECSSC--CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEE
T ss_pred -cceeceEECCCC-eEEEEcCCCeEEEECC-CCCEeEEeeCCCC--ccccceEcCCC-eEEEecCCCCEEEECC-CCcEE
Confidence 557777787776 4666777888888874 5666666654432 24456666566 5667778888999985 55544
Q ss_pred ccc
Q 001386 658 DAA 660 (1088)
Q Consensus 658 ~~~ 660 (1088)
...
T Consensus 288 ~~~ 290 (330)
T 3hxj_A 288 WNF 290 (330)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
No 244
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.98 E-value=2.2e-08 Score=112.65 Aligned_cols=238 Identities=8% Similarity=-0.015 Sum_probs=162.3
Q ss_pred cCCCEEEEEe--CCcEEEEEcCCceeEEEecCC-CCCeEEEEE-c-CCCCcEEEEEe------------------CCCeE
Q 001386 808 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPP-SPTATSLAF-N-PHDNNVIAIGM------------------DDSTI 864 (1088)
Q Consensus 808 ~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~-s-p~d~~~lasg~------------------~dg~i 864 (1088)
+||+++.+.. ++.|.+.|+.+.+....+.-+ ......+++ + | +++++++++ .++.+
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceE
Confidence 3899998886 567999999999988855433 356888888 5 8 788888874 34589
Q ss_pred EEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCC--------------------------------------cE
Q 001386 865 LIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA--------------------------------------QI 906 (1088)
Q Consensus 865 ~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg--------------------------------------~i 906 (1088)
.+.|..+.+.+.++.--. ....++++|||+++++.+.+. .|
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 999999999888776322 356788999999999888553 25
Q ss_pred EEEEcCCCceee-eeeeecCCCCccCCCCeEEEEEcCCCCEEEEE--eCCeEEEEEcCcce------------eeeeeec
Q 001386 907 FVWDVDGWGIQT-CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELT------------CLKQWFP 971 (1088)
Q Consensus 907 ~iwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~--~d~~i~vwd~~~~~------------~~~~~~~ 971 (1088)
.+.|..+.+... ...+... ....++.|+|||++++++ .+++|.++|+.+.+ ......
T Consensus 257 ~VID~~~~~~~~~~~~Ipvg-------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~- 328 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIPIA-------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE- 328 (595)
T ss_dssp EEEECSGGGCCSSEEEEEEE-------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-
T ss_pred EEEeCcccCCceeEEEEecC-------CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-
Confidence 555555411000 1111111 124579999999999986 56789999999764 222322
Q ss_pred CCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCC----------CceEEEeccccccCCCCccccccceEEEECCCCCCE
Q 001386 972 ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN----------LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQ 1041 (1088)
Q Consensus 972 ~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~ 1041 (1088)
-......++|++||...++..-|+.|.+||+.+ ...+.++..+.. + ++...++.++++| ||++
T Consensus 329 -vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yq-p----Gh~~~~~g~t~~~-DGk~ 401 (595)
T 1fwx_A 329 -LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ-P----GHLKTVMGETLDA-TNDW 401 (595)
T ss_dssp -CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC-E----EEEEETTTTSTTC-CSSE
T ss_pred -CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccc-c----ccceeccceEeCC-CCCE
Confidence 256789999999994345566899999999988 445555553221 0 1112223456788 8999
Q ss_pred EEEEeCCC--cE-----------EEEeCCCCCCC
Q 001386 1042 FAVGLTNG--EV-----------YVIEPNEPGDT 1062 (1088)
Q Consensus 1042 l~~~~~dg--~v-----------~~w~l~~~~~~ 1062 (1088)
|+++..-. .+ .++|++....+
T Consensus 402 l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 402 LVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp EEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCE
T ss_pred EEEcCCCCccccccCCCCCCCcceEEEcCCCcEE
Confidence 98886533 33 88999554433
No 245
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.97 E-value=2.3e-10 Score=126.60 Aligned_cols=190 Identities=9% Similarity=0.061 Sum_probs=109.0
Q ss_pred CCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcc
Q 001386 851 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT 930 (1088)
Q Consensus 851 d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 930 (1088)
++..+++++.||.|+.||..+|+.+..+.. +.+.+..+..++..+++++.||.|+.||..+++..............
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~- 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ- 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc-
Confidence 456889999999999999999999988876 56666666778888888889999999999887632211111000000
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEE
Q 001386 931 LAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1010 (1088)
Q Consensus 931 ~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~ 1010 (1088)
.+.+++.++..++.+.++.++.||..+|+.+..+... . ...++|++..|++++.|+.|+.||..+|+.+.
T Consensus 85 -----~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~-~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 85 -----ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSA-F----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp -----TCSCC-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred -----cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCC-C----cccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence 0111123444333367899999999999988764432 1 24567788899999999999999999999876
Q ss_pred EeccccccCCCCccccccceEEEECCCC---CCEEEEEeCCCcEEEEeCCCCCCCcccc
Q 001386 1011 RILSTAYLRPTTSCLHVYPHAIAAHPLK---PTQFAVGLTNGEVYVIEPNEPGDTWAVL 1066 (1088)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~~~~~~~~p~d---~~~l~~~~~dg~v~~w~l~~~~~~~~~~ 1066 (1088)
++....+.. .++.+ + ...+++++.||.|+.||....+..|...
T Consensus 155 ~~~~~~~~~------------~~~~~-~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 155 NATYFDYAA------------SLPED-DVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp EEEEEEECC------------BCCCC-CTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred eEecccccC------------ccccC-CccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 654222111 11222 1 1457788999999999999999899754
No 246
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.94 E-value=7.6e-10 Score=122.41 Aligned_cols=191 Identities=8% Similarity=-0.022 Sum_probs=111.5
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCc
Q 001386 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1088)
Q Consensus 407 dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1088)
++..+++++.|+.|+.||..+|+.+.. +.. +.+.+..+..++. ++++++.|+.|+.||..+|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~---~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT---LKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE---EEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE---ecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 678999999999999999999986653 333 3455555667776 577778999999999999998877654422
Q ss_pred cEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCc
Q 001386 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1088)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1088)
.......... ++..+++++.|+.|+.||.++++....+..+. ...++|++..+++++. ++.|+.||..+|+
T Consensus 81 ~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 81 ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTRE 151 (369)
T ss_dssp HHHTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSSS
T ss_pred cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCCC
Confidence 1100011001 23478888999999999999988877665543 2345678888888765 5679999999998
Q ss_pred eeEEEeccccccccEEEEEEeCCC---CEEEEEeCCCcEEEEEcCCCeeeEEEeC
Q 001386 567 IKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1088)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1088)
.+..+.... .....+..+. ..+++++.+|.|+.||..+|+.+.....
T Consensus 152 ~~W~~~~~~-----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 152 LRWNATYFD-----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp CCCEEEEEE-----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred EEEeEeccc-----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 766654322 1222233332 5678889999999999999999888764
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.85 E-value=6.9e-06 Score=86.11 Aligned_cols=224 Identities=12% Similarity=0.047 Sum_probs=143.7
Q ss_pred CCeEEEEECCCCCEEEEE-eCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC
Q 001386 397 VSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1088)
Q Consensus 397 ~~V~~l~~s~dg~~las~-~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~ 475 (1088)
..+..++|++++..|..+ ..++.|.+++..++.... .+.........+++.+++.. ++++....+.|.++|+...
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 457899999976666555 456799999998754221 22222346789999998664 4555566788999997654
Q ss_pred ceeEEeccCCccEEEEeeeeeCCceEEEEEec--CCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCC
Q 001386 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV--DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1088)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 553 (1088)
...............+++.+. ++.++++... .+.|..++++.................+++++++..|+.+.. +
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~-~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~---~ 187 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPV-RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA---G 187 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETT-TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---T
T ss_pred CEEEEEECCCCCccEEEEeeC-CCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---C
Confidence 332222222245677887542 3344444433 468888888754433333233346788999999888877653 3
Q ss_pred ceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec
Q 001386 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1088)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1088)
.+.|..+|.........+.+. .....++.. +..++.+. ..+.|.++|..+++.+..+.... .+....+++.|
T Consensus 188 ~~~I~~~~~~g~~~~~~~~~~----~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~ 260 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVLEGL----QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIAL 260 (267)
T ss_dssp TTEEEEEETTEEEEEEEEECC----CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEEC
T ss_pred CCEEEEEecCCCceEEEecCC----CCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecC
Confidence 557999998765444433322 234566654 45555554 56899999999999998886532 12357888888
Q ss_pred CCC
Q 001386 633 NGT 635 (1088)
Q Consensus 633 ~~~ 635 (1088)
++.
T Consensus 261 ~~~ 263 (267)
T 1npe_A 261 SQC 263 (267)
T ss_dssp SCC
T ss_pred ccC
Confidence 764
No 248
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.85 E-value=1.6e-06 Score=103.47 Aligned_cols=376 Identities=13% Similarity=0.111 Sum_probs=206.2
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeccCCcc----------E-EEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEe
Q 001386 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP----------V-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1088)
Q Consensus 457 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 525 (1088)
.++.++.++.|.-+|..+|+.+.++...... + ..+++ .+..++.++.|+.|..+|.++++.+...
T Consensus 68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE----ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 4666777899999999999999887543211 0 11122 2347888899999999999999988776
Q ss_pred cCCCCc-eEEEEEcc--CCCEEEEEeeCC--CCceeEEEEeCCCCceeEEEecccc------------------------
Q 001386 526 DAPGLG-CTRMAYSA--NGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQL------------------------ 576 (1088)
Q Consensus 526 ~~~~~~-v~~~~~s~--~g~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~------------------------ 576 (1088)
...... ...+..+| .+..++++.... ..++.|+.+|..+|+.+-.+.....
T Consensus 144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w 223 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (668)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence 543210 00011111 133454443211 1257899999999999887753210
Q ss_pred ----ccccEEEEEEeCCCCEEEEEeCCC-------------------cEEEEEcCCCeeeEEEeCCCCC-------CCCc
Q 001386 577 ----QHNSVSVVHFDTAKDQILAAGDDH-------------------VIKIWDMNKVQLLTTIDAGGGL-------PENP 626 (1088)
Q Consensus 577 ----~~~~v~~~~~~~~~~~l~~~s~dg-------------------~i~iwd~~~~~~~~~~~~~~~~-------~~v~ 626 (1088)
+......+++.++...++.++.++ .|..+|..+|+.+..++...+. ....
T Consensus 224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~ 303 (668)
T 1kv9_A 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT 303 (668)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcE
Confidence 001112467888888998888766 3999999999999888753221 1111
Q ss_pred eEEEecCCC---EEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccc
Q 001386 627 RICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1088)
Q Consensus 627 ~v~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 703 (1088)
...+..+|+ .++.++.+|.++++|..+++.+......... ....+.+ ..+..........++
T Consensus 304 ~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~-w~~~~d~---------~~g~p~~~~~~~~~~----- 368 (668)
T 1kv9_A 304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVT-WAEKVDL---------ATGRPVEAPGVRYEK----- 368 (668)
T ss_dssp EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCC-SEEEECT---------TTCCEEECTTTTCSS-----
T ss_pred EEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccc-ccccccc---------ccCCccccccccccC-----
Confidence 222334665 6888999999999999999877543322100 0000100 000000000000000
Q ss_pred cccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCC
Q 001386 704 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRH 783 (1088)
Q Consensus 704 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~ 783 (1088)
......|.......-..++++|+...++....+-...... . . ..|....
T Consensus 369 -------------------~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~-~--~---------~~~~~~~ 417 (668)
T 1kv9_A 369 -------------------EPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRN-E--G---------KDFVTRK 417 (668)
T ss_dssp -------------------SCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECC-C--G---------GGCCCCS
T ss_pred -------------------CeeEECCCCccccCCCcceECCCCCEEEEeccccceEeee-e--c---------ccccccc
Confidence 0011111111111122367888877766655442222110 0 0 0010000
Q ss_pred CCcceeeccCCCCCCCCeeEEEEecCCCEEE-EEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCC
Q 001386 784 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLF-SAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 861 (1088)
Q Consensus 784 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~-~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d 861 (1088)
+. . .... ..+..++ ... +|.|..||..+++.+.....+.. .....+.. .+.++++|+.|
T Consensus 418 ~~------~----~g~~-------~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~~~~~t-~gg~vf~g~~d 478 (668)
T 1kv9_A 418 AF------N----TAAG-------FADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH-WNGGTLST-AGNLVFQGTAA 478 (668)
T ss_dssp SC------C----CSSC-------GGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTT
T ss_pred cc------c----cCcc-------ccccCCCCCCCccceEEEEeCCCCcEEEEccCCCC-CcCceeEe-CCCEEEEECCc
Confidence 00 0 0000 0011111 122 47899999999999877664332 22223333 45688889999
Q ss_pred CeEEEEEcCCceeeeeeccccCCe-eEEEECCCCC-EEEEEe
Q 001386 862 STILIYNARSSEVISKLEGHSKRV-TGLVFSDALN-ILVSSG 901 (1088)
Q Consensus 862 g~i~lwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~-~las~s 901 (1088)
|.++.||..+|+.+..++...+.. .-+.+..+|+ +++.++
T Consensus 479 g~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 479 GQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred ccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 999999999999998887543211 2244455676 455544
No 249
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.78 E-value=5.6e-07 Score=91.87 Aligned_cols=200 Identities=13% Similarity=0.090 Sum_probs=139.1
Q ss_pred CeeEEEEecCCCEEEEEe---CCcEEEEEcCCceeEEEecCCC-CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceee
Q 001386 800 AVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 875 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~ 875 (1088)
....+++++|+.++++.+ ++.|+++|+.+++.+..+.-.. .....+++. ++++.++...++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 467899999875555543 4789999999999998876332 233456665 3466666677899999999999999
Q ss_pred eeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCCe
Q 001386 876 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH 954 (1088)
Q Consensus 876 ~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~ 954 (1088)
.++..-.. ....+++||+.|+.+..++.|.++|..+.+......+... +... ..+..+.|. +|+..+.. .++.
T Consensus 100 ~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-~~p~--~~~nele~~-dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 100 KNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-GHRV--IRLNELEYI-NGEVWANIWQTDC 173 (266)
T ss_dssp EEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET-TEEC--CCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC-Cccc--ccceeEEEE-CCEEEEecCCCCe
Confidence 88863212 1244566888777777788999999988654333222211 1110 135678888 77655554 4689
Q ss_pred EEEEEcCcceeeeeeecCC------------CcCEEEEEEeeCCCEEE-EEeCCCcEEEEEcCCCc
Q 001386 955 LAIYEAEELTCLKQWFPIS------------SVPISQATFSCDCRMVF-TSFVDGTLSIHEASNLE 1007 (1088)
Q Consensus 955 i~vwd~~~~~~~~~~~~~h------------~~~v~~l~fs~dg~~l~-s~s~dg~v~vwd~~~~~ 1007 (1088)
|.+.|..+++.+..+..+- ......++|+|+++.++ ++...+.+.+-++....
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 9999999999988865320 13568999999987655 55577888888877653
No 250
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.78 E-value=5.7e-06 Score=96.26 Aligned_cols=167 Identities=14% Similarity=0.171 Sum_probs=106.9
Q ss_pred EEEEcCCCCcEEEEEeCC----------------CeEEEEEcCCceeeeeecc--cc--------CCeeEEEEC-CCC--
Q 001386 844 SLAFNPHDNNVIAIGMDD----------------STILIYNARSSEVISKLEG--HS--------KRVTGLVFS-DAL-- 894 (1088)
Q Consensus 844 ~l~~sp~d~~~lasg~~d----------------g~i~lwd~~~~~~~~~l~~--h~--------~~V~~l~~s-~dg-- 894 (1088)
.+++.+ ...+++.+..+ +.|.-+|..+|+.+..++. |. .++. +... .+|
T Consensus 245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~ 322 (599)
T 1w6s_A 245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA 322 (599)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence 356667 45567766655 3899999999999877654 21 1221 2222 567
Q ss_pred -CEEEEEeCCCcEEEEEcCCCceeeeeeeec----------CCCCcc---------------------CCCCeEEEEEcC
Q 001386 895 -NILVSSGGDAQIFVWDVDGWGIQTCRSLQT----------PDGVMT---------------------LAPSETHIQFHK 942 (1088)
Q Consensus 895 -~~las~s~Dg~i~iwd~~~~~~~~~~~~~~----------~~~~~~---------------------~~~~v~~~~fs~ 942 (1088)
+.++.++.+|.+.+.|..+++..-...+.. ..+... -...-..++|+|
T Consensus 323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 402 (599)
T 1w6s_A 323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP 402 (599)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence 567778899999999999987543322110 000000 000113567787
Q ss_pred CCCEEEEE----------------------------------------eCCeEEEEEcCcceeeeeeecCCCcCEEEEEE
Q 001386 943 DQTRFLLV----------------------------------------HETHLAIYEAEELTCLKQWFPISSVPISQATF 982 (1088)
Q Consensus 943 dg~~l~~~----------------------------------------~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~f 982 (1088)
+..++.+. ..+.|..||+.+|+.+.+...+ .++..-.+
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~ 480 (599)
T 1w6s_A 403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTM 480 (599)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCE
T ss_pred CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC--CCccCcce
Confidence 77666541 2357999999999987765432 12222223
Q ss_pred eeCCCEEEEEeCCCcEEEEEcCCCceEEEecc
Q 001386 983 SCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1014 (1088)
Q Consensus 983 s~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 1014 (1088)
+..|..++.++.||.++.||..+|+.+.++..
T Consensus 481 ~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence 44677888899999999999999999988863
No 251
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.78 E-value=1.5e-05 Score=83.49 Aligned_cols=255 Identities=11% Similarity=0.001 Sum_probs=153.7
Q ss_pred CEEEEEeCCCEEEEEEccCCCccc--ceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCc
Q 001386 409 SLLGVAYSKHIVQLYAYHGGSDAR--QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1088)
Q Consensus 409 ~~las~~~dg~i~vwd~~~~~~~~--~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1088)
.+|..+.. +.|+.+++.+..... ....+......+..++|++++.. ++++....+.|.++|+..+.....+.....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE-EEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence 45555543 478999988654211 01112222345789999997764 455556678999999876654433333334
Q ss_pred cEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCc
Q 001386 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1088)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1088)
....+++.+. ++.+.++....+.|.+++++.................++++|++..|+.+.... ..+.|..++....
T Consensus 80 ~p~~ia~d~~-~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~-~~~~I~~~~~dg~- 156 (267)
T 1npe_A 80 SPEGIALDHL-GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGT- 156 (267)
T ss_dssp CEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSC-
T ss_pred CccEEEEEec-CCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC-CCcEEEEEecCCC-
Confidence 6678887543 345566666678999999876544333333334678899999877776654321 1356888887543
Q ss_pred eeEEEeccccccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCc
Q 001386 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1088)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 645 (1088)
....+.... ......+++++++..|+.+. ..+.|.+++.........+... . ....++.. ++.++++....+.
T Consensus 157 ~~~~~~~~~--~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-~--~P~gi~~d-~~~lyva~~~~~~ 230 (267)
T 1npe_A 157 NRRILAQDN--LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-Q--YPFAVTSY-GKNLYYTDWKTNS 230 (267)
T ss_dssp CCEEEECTT--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-C--SEEEEEEE-TTEEEEEETTTTE
T ss_pred CcEEEEECC--CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC-C--CceEEEEe-CCEEEEEECCCCe
Confidence 233332111 24678999999877776654 5688999999765444444321 1 22456554 3444444445689
Q ss_pred EEEEeCCCCCccccccccc-CcceeeeecC
Q 001386 646 IKILETPESNSVDAAGVLS-DNLRKLSVNP 674 (1088)
Q Consensus 646 i~iwd~~~~~~~~~~~~~~-~~v~~~~~~p 674 (1088)
|..++..+++.+..+.... .....+++.|
T Consensus 231 v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~ 260 (267)
T 1npe_A 231 VIAMDLAISKEMDTFHPHKQTRLYGITIAL 260 (267)
T ss_dssp EEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred EEEEeCCCCCceEEEccccccccceeeecC
Confidence 9999999887766654322 1344455544
No 252
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.77 E-value=1.5e-06 Score=88.61 Aligned_cols=217 Identities=9% Similarity=-0.009 Sum_probs=143.3
Q ss_pred ceeEEEecCCCC--CeEEEEEcCCCCcEEEEEeC--CCeEEEEEcCCceeeeeecccc-CCeeEEEECCCCCEEEEE-eC
Q 001386 829 FKTILTIMPPSP--TATSLAFNPHDNNVIAIGMD--DSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNILVSS-GG 902 (1088)
Q Consensus 829 ~~~~~~~~~~~~--~i~~l~~sp~d~~~lasg~~--dg~i~lwd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~las~-s~ 902 (1088)
.+.+.++. |.. ....++|++ ++.++++.+. ++.|+++|+.+++.+..+.-.. .....+++. +..|..+ -.
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred ceEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence 34555664 443 468999999 6655555443 5799999999999988765221 122345554 4455444 46
Q ss_pred CCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCCeEEEEEcCcceeeeeeecCC----CcCE
Q 001386 903 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPIS----SVPI 977 (1088)
Q Consensus 903 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h----~~~v 977 (1088)
++.+.++|..+.+.... +....+ . ...+++||+.+.++ .++.|.++|..+.+.+..+..+. -..+
T Consensus 85 ~~~v~viD~~t~~v~~~--i~~g~~-~-------g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ 154 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKN--FTHQMK-D-------GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRL 154 (266)
T ss_dssp CSEEEEEETTTTEEEEE--EECCSS-S-------CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred CCEEEEEECCCCcEEEE--EECCCC-C-------eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccc
Confidence 78999999998654332 221101 1 23466788877775 45789999999998887765432 1246
Q ss_pred EEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCC---CCccccccceEEEECCCCCCEEEEEeCCCcEEEE
Q 001386 978 SQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP---TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1054 (1088)
Q Consensus 978 ~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w 1054 (1088)
..+.|. ||+..+....++.|.+-|..+++.+..+......+. .......-+..++|+|+...+++++...+.|++.
T Consensus 155 nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i 233 (266)
T 2iwa_A 155 NELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEI 233 (266)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred eeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence 788888 776555555678999999999999998874321110 0001113457899999444577777788999999
Q ss_pred eCCCCC
Q 001386 1055 EPNEPG 1060 (1088)
Q Consensus 1055 ~l~~~~ 1060 (1088)
++....
T Consensus 234 ~l~~~~ 239 (266)
T 2iwa_A 234 KLHLVR 239 (266)
T ss_dssp EEEECC
T ss_pred EEeccc
Confidence 996643
No 253
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.76 E-value=0.0019 Score=81.14 Aligned_cols=570 Identities=11% Similarity=0.080 Sum_probs=279.3
Q ss_pred eEEEEECCCCCEEEEEeCCCEEEEEEccCCCc-----ccceeEeccCCCCEEEEEecCCC---CcEEEEEEe---CCCcE
Q 001386 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVGNVNDLAFSAPC---KQISVITCG---DDKTI 467 (1088)
Q Consensus 399 V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~-----~~~~~~~~~h~~~v~~~~~s~d~---~~l~l~s~s---~d~~i 467 (1088)
-.++++-.+| +|..|+..|.=.+|.+..... +.....+ ..-++|.+++..... .. .+++++ .+|.+
T Consensus 329 ~ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~-~N~~PI~D~~v~d~~~~~~~-~i~~~sG~g~~gsL 405 (1158)
T 3ei3_A 329 AECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETF-TNLGPIVDMCVVDLERQGQG-QLVTCSGAFKEGSL 405 (1158)
T ss_dssp CSEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEE-CCCCSEEEEEEECTTSSSCC-EEEEEECCGGGCEE
T ss_pred ccEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeee-cCcCCceeEEEEccCCCCCC-eEEEEECcCCCCeE
Confidence 3567776555 788888888777777764322 1222223 234688888775321 21 233332 46778
Q ss_pred EEEeCCCC-ceeEEecc-CCccEEEEeeee-eCCceEEEEEecCCeEEEEECCCCCceEEecCCC-----CceEEEEEcc
Q 001386 468 KVWDAVTG-SRTYSFEG-HGAPVYSLCPHA-KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-----LGCTRMAYSA 539 (1088)
Q Consensus 468 ~vwd~~~~-~~~~~~~~-~~~~v~~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~s~ 539 (1088)
++..-.-+ +.+..+.- .-..++.+.... +....+|+.+..+.+ +++.+... ........+ ..+.+-.+ +
T Consensus 406 ~~lr~Gi~~~~~~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev~~~gf~~~~~TL~~~~l-~ 482 (1158)
T 3ei3_A 406 RIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEETELMGFVDDQQTFFCGNV-A 482 (1158)
T ss_dssp EEEEESBCEEEEEEECCCSCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEECCTTCCSSSCEEEEEEE-T
T ss_pred EEEecCCCEEEEEeecCCCccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-cccccccccccCCCCcEEEEEc-C
Confidence 87642111 11112210 123444443211 123356776666655 45544221 222111111 11111111 2
Q ss_pred CCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCC
Q 001386 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1088)
Q Consensus 540 ~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1088)
++ .++=.. ...|++.+...+..+..+.... +..|..++.+. .+++.++ ++.+.++.+..++.......
T Consensus 483 ~~-~ivQVt-----~~~Irli~~~~~~~~~~w~~p~--~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~- 550 (1158)
T 3ei3_A 483 HQ-QLIQIT-----SASVRLVSQEPKALVSEWKEPQ--AKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHT- 550 (1158)
T ss_dssp TT-EEEEEE-----SSCEEEEESSSCCEEEEECCTT--CCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEE-
T ss_pred CC-eEEEEe-----cCEEEEEECCCCeEEEEEECCC--CCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeeccc-
Confidence 22 333332 1227777766555555555433 23566665543 4666665 67888888876643322111
Q ss_pred CCCCCCceEEEecC------CCEEEEEeC-CCcEEEEeCCCCCccccccccc-CcceeeeecCCCcceeccccCCceeec
Q 001386 620 GGLPENPRICFNKN------GTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPISTVTGAGIANGSVSVN 691 (1088)
Q Consensus 620 ~~~~~v~~v~~s~~------~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~~~~~~~~~~~~~ 691 (1088)
.-...|.|+++.|. +.++++|.. |++++|+++.+.+.+....-.. ....++.+.. +
T Consensus 551 ~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~---------------~- 614 (1158)
T 3ei3_A 551 EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTT---------------F- 614 (1158)
T ss_dssp ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEE---------------E-
T ss_pred CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEE---------------e-
Confidence 11235889998763 479999996 9999999998654332111100 1111121110 1
Q ss_pred CCCCCCCCcccccccCccceeccccccC--CCcceeeecCCccccccEEEEEEecCCc-eEEEeccccceEEEEccCCCC
Q 001386 692 EDPKEDVKPEISVEAENKSEVEKPLFAR--PSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDL 768 (1088)
Q Consensus 692 ~~~~~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~~~dg~v~iw~~~~~~~ 768 (1088)
....++..|-.||.+..+.++... ........+ ...++.-..+...|. .+++.++ .-..++.-+
T Consensus 615 ----~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~L----G~~pv~L~~~~~~~~~~V~a~s~-rp~liy~~~---- 681 (1158)
T 3ei3_A 615 ----ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTL----GTQPTVLRTFRSLSTTNVFACSD-RPTVIYSSN---- 681 (1158)
T ss_dssp ----TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEEC----CSSCCEEEEEESSSCEEEEEESS-SCEEEEESS----
T ss_pred ----CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEc----CCCceEEEEEeeCCceeEEEECC-CCEEEEEcC----
Confidence 112345555556655444332211 111111111 112332223333332 2333332 222222210
Q ss_pred CCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeE-EEEecC--CCEEEEEeCCcEEEEEcCCcee--EEEecCCCCCeE
Q 001386 769 TLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC-FALSKN--DAYLFSASGGVISLYIVMTFKT--ILTIMPPSPTAT 843 (1088)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~d--g~~l~~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~ 843 (1088)
+. +....+ ....+.. ..|+.. ..-++..+++.++|..+.+.+. ++++. -...+.
T Consensus 682 ---------------~~-l~~s~l----~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ip-L~~Tpr 740 (1158)
T 3ei3_A 682 ---------------HK-LVFSNV----NLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVP-LYESPR 740 (1158)
T ss_dssp ---------------SS-EEEEEB----SSSCCCEEEEECCSSSTTEEEEECSSCEEEEEECCSSSEEEEEEE-CSSEEE
T ss_pred ---------------Cc-eEEecc----ChHHhceEeccCcccCCCcEEEEcCCceEEEEecccCCeeEEEEe-CCCCce
Confidence 11 111111 1112222 233321 2345555666788888754322 22222 335677
Q ss_pred EEEEcCCCCcEEEEEeC-------------------------------------------------CCeEEEEEcCCcee
Q 001386 844 SLAFNPHDNNVIAIGMD-------------------------------------------------DSTILIYNARSSEV 874 (1088)
Q Consensus 844 ~l~~sp~d~~~lasg~~-------------------------------------------------dg~i~lwd~~~~~~ 874 (1088)
.++++| ..+.++++.. -+.|++.|..+.+.
T Consensus 741 ri~y~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~ 819 (1158)
T 3ei3_A 741 KICYQE-VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEV 819 (1158)
T ss_dssp EEEEEG-GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCE
T ss_pred EEEEcC-CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeE
Confidence 888888 4554443321 12467777777776
Q ss_pred eeeeccc-cCCeeEEE---ECCC-CCEEEEEe----------CCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEE
Q 001386 875 ISKLEGH-SKRVTGLV---FSDA-LNILVSSG----------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 939 (1088)
Q Consensus 875 ~~~l~~h-~~~V~~l~---~s~d-g~~las~s----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 939 (1088)
+..+.-. ...+.+++ |..+ ..+++.|. ..|.|.++++..++..... -...+ +.+++++
T Consensus 820 i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~-~~~v~------g~v~al~ 892 (1158)
T 3ei3_A 820 LHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVA-EKEVK------GAVYSMV 892 (1158)
T ss_dssp EEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEE-EEEES------SCEEEEE
T ss_pred EEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEE-EEEcC------CcCEEEe
Confidence 6554321 12244443 4333 47888776 3478999999854322111 11112 3566665
Q ss_pred EcCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEE--cCCCceEEEeccccc
Q 001386 940 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE--ASNLEVQCRILSTAY 1017 (1088)
Q Consensus 940 fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd--~~~~~~~~~~~~~~~ 1017 (1088)
-- +| +|+++..+++++|++...+.++. ...+-..|..+.....|.++++|..-..|.+.. ...+++..... .
T Consensus 893 ~~-~g-~Lla~ig~~l~vy~l~~~~~L~~-~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~--D- 966 (1158)
T 3ei3_A 893 EF-NG-KLLASINSTVRLYEWTTEKELRT-ECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIAR--D- 966 (1158)
T ss_dssp EE-TT-EEEEEETTEEEEEEECTTSCEEE-EEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEE--C-
T ss_pred ee-CC-EEEEEcCCEEEEEECCCCceEEE-EeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEe--e-
Confidence 33 23 77778889999999986654431 111111133334434577888888777776654 44443332221 1
Q ss_pred cCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001386 1018 LRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1058 (1088)
Q Consensus 1018 ~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~ 1058 (1088)
....+.+++.|-- ...++.+..+|.+.+.....
T Consensus 967 ------~~~~~vta~~~ld--~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 967 ------FNPNWMSAVEILD--DDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp ------CSCBCEEEEEEEE--TTEEEEEETTSEEEEEEECT
T ss_pred ------cccccEEEEEEEc--cCcEEEEcCCCcEEEEecCC
Confidence 1224567777763 36888899999999998865
No 254
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.71 E-value=0.0026 Score=79.87 Aligned_cols=573 Identities=9% Similarity=0.019 Sum_probs=277.8
Q ss_pred eeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC----CCEEEE
Q 001386 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD----GSLLGV 413 (1088)
Q Consensus 338 ~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d----g~~las 413 (1088)
.++++-.+| +|..|+..|.=.+|.+.....-...-+.+-| --..-++|.+++.... ...|++
T Consensus 330 ssl~~l~~g--~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~------------~~~N~~PI~D~~v~d~~~~~~~~i~~ 395 (1158)
T 3ei3_A 330 ECLTYLDNG--VVFVGSRLGDSQLVKLNVDSNEQGSYVVAME------------TFTNLGPIVDMCVVDLERQGQGQLVT 395 (1158)
T ss_dssp SEEEECSTT--EEEEECSSSCEEEEEECSSCCTTSCCEEEEE------------EECCCCSEEEEEEECTTSSSCCEEEE
T ss_pred cEEEEECCC--EEEEEEecCCcEEEEEecCCCCccceEEeEe------------eecCcCCceeEEEEccCCCCCCeEEE
Confidence 455555566 5788888787777777654210000000000 1113467777776432 235555
Q ss_pred Ee---CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecC---CCCcEEEEEEeCCCcEEEEeCCCCceeEEec--cCC
Q 001386 414 AY---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTYSFE--GHG 485 (1088)
Q Consensus 414 ~~---~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~---d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~--~~~ 485 (1088)
++ .+|.+++..-.-+-.......+.+ -..++.+.... .+. +|+.+..+.+ .|+.+. ++.+.... +..
T Consensus 396 ~sG~g~~gsL~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~--yLvlS~~~~T-~Vl~i~-~e~veev~~~gf~ 470 (1158)
T 3ei3_A 396 CSGAFKEGSLRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDD--TLVLSFVGQT-RVLMLN-GEEVEETELMGFV 470 (1158)
T ss_dssp EECCGGGCEEEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCC--EEEEEETTEE-EEEEEE-TTEEEEECCTTCC
T ss_pred EECcCCCCeEEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCC--EEEEECCCCe-EEEEEe-CCccccccccccc
Confidence 43 457788765432221111112332 24566665432 233 5665555555 455442 22232221 111
Q ss_pred ccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCC-CceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC
Q 001386 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1088)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 564 (1088)
.....++...-+++ .++=.. ...|++.+.........+..+. ..|...+.+. .+++.+. + +.+..+++..
T Consensus 471 ~~~~TL~~~~l~~~-~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g----~~l~~fel~~ 541 (1158)
T 3ei3_A 471 DDQQTFFCGNVAHQ-QLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-G----RALYYLQIHP 541 (1158)
T ss_dssp SSSCEEEEEEETTT-EEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-T----TEEEEEEEET
T ss_pred CCCCcEEEEEcCCC-eEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-C----CEEEEEEeeC
Confidence 11111111111111 222222 2345666655444444444433 3566555443 4555553 1 2366666665
Q ss_pred CceeEEEeccccccccEEEEEEeCC------CCEEEEEeC-CCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEec--CCC
Q 001386 565 GAIKRTYQGLQLQHNSVSVVHFDTA------KDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK--NGT 635 (1088)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~--~~~ 635 (1088)
++........ -...|.|+++.|. ++++++|.. |++++|+++.+.+.+........ ....++.+.. ...
T Consensus 542 ~~L~~~~~~~--l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l~~~~~~~ 618 (1158)
T 3ei3_A 542 QELRQISHTE--MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILMTTFESSH 618 (1158)
T ss_dssp TEEEEEEEEE--CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEEEEETTEE
T ss_pred CceeeecccC--CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEEEEeCCCc
Confidence 5433221111 1367999998763 368888886 99999999998777665544321 1223444332 345
Q ss_pred EEEEEeCCCcEEEEeCC--CCCccccc--ccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccce
Q 001386 636 LLAVIANENRIKILETP--ESNSVDAA--GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 711 (1088)
Q Consensus 636 ~l~~~~~dg~i~iwd~~--~~~~~~~~--~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 711 (1088)
+|.+|-.||.+.-+.+. ++...... .-...++.-..+...+ +..++..+ +....
T Consensus 619 ~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~---------------------~~~V~a~s-~rp~l 676 (1158)
T 3ei3_A 619 YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLS---------------------TTNVFACS-DRPTV 676 (1158)
T ss_dssp EEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSS---------------------CEEEEEES-SSCEE
T ss_pred EEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCC---------------------ceeEEEEC-CCCEE
Confidence 78899999988665544 33222110 0001111111111000 00111111 11111
Q ss_pred eccccccCCCcceeeecCCccccccEE-EEEEecC--CceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcce
Q 001386 712 VEKPLFARPSECQSLLLPSKVKANKIS-RLTYNNG--GQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFM 788 (1088)
Q Consensus 712 vw~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~s~~--g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1088)
++... .......+ ....+. ...|+.. ..-++.. .++.++|..++.-.. | .+.
T Consensus 677 iy~~~----~~l~~s~l----~~~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~~----------~------~~~ 731 (1158)
T 3ei3_A 677 IYSSN----HKLVFSNV----NLKEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEIQK----------L------HIR 731 (1158)
T ss_dssp EEESS----SSEEEEEB----SSSCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCSSS----------E------EEE
T ss_pred EEEcC----CceEEecc----ChHHhceEeccCcccCCCcEEEE-cCCceEEEEecccCC----------e------eEE
Confidence 11100 00000000 001111 1223221 1223333 334577776542110 1 011
Q ss_pred eeccCCCCCCCCeeEEEEecCCCEEEEEe--------------------------------------------------C
Q 001386 789 VNDTTDSNSQEAVPCFALSKNDAYLFSAS--------------------------------------------------G 818 (1088)
Q Consensus 789 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--------------------------------------------------d 818 (1088)
..+ -...+..++++|+.+.++++. .
T Consensus 732 ~ip-----L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 806 (1158)
T 3ei3_A 732 TVP-----LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEV 806 (1158)
T ss_dssp EEE-----CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEE
T ss_pred EEe-----CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceee
Confidence 111 234566666666655443321 1
Q ss_pred CcEEEEEcCCceeEEEecCCC-CCeEEEE---EcCCCCcEEEEEe----------CCCeEEEEEcCCceeeeee-ccccC
Q 001386 819 GVISLYIVMTFKTILTIMPPS-PTATSLA---FNPHDNNVIAIGM----------DDSTILIYNARSSEVISKL-EGHSK 883 (1088)
Q Consensus 819 g~i~iwd~~~~~~~~~~~~~~-~~i~~l~---~sp~d~~~lasg~----------~dg~i~lwd~~~~~~~~~l-~~h~~ 883 (1088)
+.|++.|..+++.+..+.-.. ..+.+++ |..+...++++|+ ..|.|++|++..+++.... ....+
T Consensus 807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g 886 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG 886 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS
T ss_pred EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC
Confidence 237788888887776655333 3344444 4432357899887 3589999999755432221 12467
Q ss_pred CeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeC-CeEE--EEEc
Q 001386 884 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE-THLA--IYEA 960 (1088)
Q Consensus 884 ~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d-~~i~--vwd~ 960 (1088)
+|++++-- +|++||.. ...|++|++...+.....+ ... . .|..+.....++++++|.- ..+. -|+.
T Consensus 887 ~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~~L~~~~-~~~----~---~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~ 955 (1158)
T 3ei3_A 887 AVYSMVEF-NGKLLASI--NSTVRLYEWTTEKELRTEC-NHY----N---NIMALYLKTKGDFILVGDLMRSVLLLAYKP 955 (1158)
T ss_dssp CEEEEEEE-TTEEEEEE--TTEEEEEEECTTSCEEEEE-EEC----C---CSCEEEEEEETTEEEEEESSBCEEEEEEET
T ss_pred cCEEEeee-CCEEEEEc--CCEEEEEECCCCceEEEEe-ecc----c---cEEEEEEeccCCEEEEEEhhheEEEEEEEc
Confidence 88887643 45555433 4789999998654222111 101 0 1333344446778888632 3344 4555
Q ss_pred CcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCC
Q 001386 961 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1005 (1088)
Q Consensus 961 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~ 1005 (1088)
..++....-...+...++++.|-.++ .++.+..+|.+.+.....
T Consensus 956 ~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 956 MEGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp TTTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred CCCeEEEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 55554443334457889999998665 666788999999997665
No 255
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.69 E-value=7.7e-06 Score=95.42 Aligned_cols=376 Identities=11% Similarity=0.015 Sum_probs=203.6
Q ss_pred EEEEEeC-CCcEEEEeC-CCCceeEEeccCCcc----------E-EEEeeeeeCCceEEEEEecCCeEEEEECCCCCceE
Q 001386 457 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGAP----------V-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 523 (1088)
Q Consensus 457 ~l~s~s~-d~~i~vwd~-~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 523 (1088)
.++.++. ++.|.-+|. .+|+.+.++...... + ..+++ .+..++.++.|+.+..+|..+++.+.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 3556666 889999999 899998877533210 0 11122 23478888899999999999999887
Q ss_pred EecCCCC----ceEE-EEEccCCCEEEEEeeCC--CCceeEEEEeCCCCceeEEEeccccc-------------------
Q 001386 524 DYDAPGL----GCTR-MAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ------------------- 577 (1088)
Q Consensus 524 ~~~~~~~----~v~~-~~~s~~g~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~------------------- 577 (1088)
....... .+.+ ... .++ .++++.... ..++.|+.+|..+|+.+-.+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 6554321 1111 111 134 455544211 11467999999999988776543200
Q ss_pred ---------------cc-cEEEEEEeCCCCEEEEEeCC----------------CcEEEEEcCCCeeeEEEeCCCCC---
Q 001386 578 ---------------HN-SVSVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGL--- 622 (1088)
Q Consensus 578 ---------------~~-~v~~~~~~~~~~~l~~~s~d----------------g~i~iwd~~~~~~~~~~~~~~~~--- 622 (1088)
.. ....+++.++...++.++.+ +.|..+|..+|+.+..++...+.
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 00 00235667777777776642 35999999999999888753211
Q ss_pred -CCCce---EEEecCCC---EEEEEeCCCcEEEEeCCCCCcccccccccC--cceeeeecCCCcceeccccCCceeecCC
Q 001386 623 -PENPR---ICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSD--NLRKLSVNPISTVTGAGIANGSVSVNED 693 (1088)
Q Consensus 623 -~~v~~---v~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~~~~~~~~~~~~~~~ 693 (1088)
..+.. +....+|+ .++.++.+|.+.++|..+++.+........ ....+..
T Consensus 298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~--------------------- 356 (571)
T 2ad6_A 298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDL--------------------- 356 (571)
T ss_dssp CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT---------------------
T ss_pred cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccc---------------------
Confidence 01111 22224674 677888899999999999877654432110 0000000
Q ss_pred CCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCC
Q 001386 694 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 773 (1088)
Q Consensus 694 ~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~ 773 (1088)
..++.+..... .. .+........|.......-..++++|+...+++...+....++..+..
T Consensus 357 --~~g~p~~~~~~---------~~-~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~------- 417 (571)
T 2ad6_A 357 --KTGTPVRDPEF---------AT-RMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLP------- 417 (571)
T ss_dssp --TTCSEEECGGG---------CC-CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC-------
T ss_pred --cCCceeccccc---------CC-CCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccc-------
Confidence 00000000000 00 000001111121111111235788999888888777655554432210
Q ss_pred CCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCc
Q 001386 774 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 853 (1088)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~ 853 (1088)
...+.. .-.....+..+|.+. ....++.|..||..+++.+.++.... .+....+.. .+.
T Consensus 418 -------~~~g~~----------~~g~~~~~~~~~~~~--~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t-~gg 476 (571)
T 2ad6_A 418 -------YRAGQF----------FVGATLAMYPGPNGP--TKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYT-KGG 476 (571)
T ss_dssp -------CCTTSC----------CCCEEEEEEECTTST--TSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEE-TTT
T ss_pred -------cccCCc----------cccccceeccCcccc--CCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEE-CCC
Confidence 000110 000011122233321 00125778899999998887765332 222222222 345
Q ss_pred EEEEEeCCCeEEEEEcCCceeeeeeccccCC-eeEEEECCCCCEEEE
Q 001386 854 VIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVS 899 (1088)
Q Consensus 854 ~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~-V~~l~~s~dg~~las 899 (1088)
++++++.||.|+.||..+|+.+.++...... -..+.+..+|+.++.
T Consensus 477 ~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 477 LVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 6777999999999999999999888643321 122445567765443
No 256
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.68 E-value=4.5e-06 Score=99.67 Aligned_cols=268 Identities=11% Similarity=0.072 Sum_probs=166.2
Q ss_pred EEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeC------CCEEEE
Q 001386 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS------KHIVQL 422 (1088)
Q Consensus 349 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~------dg~i~v 422 (1088)
.+++++.|+.|..+|..+|+.+-.... ...... ......++. .+..++++.. +|.|..
T Consensus 119 ~v~v~~~dg~l~alD~~tG~~~W~~~~-------~~~~~~---~~~~~~P~v------~~~~v~vg~~~~~~~~~g~v~a 182 (668)
T 1kv9_A 119 KVYVGTLDGRLIALDAKTGKAIWSQQT-------TDPAKP---YSITGAPRV------VKGKVIIGNGGAEYGVRGFVSA 182 (668)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEEC-------SCTTSS---CBCCSCCEE------ETTEEEECCBCTTTCCBCEEEE
T ss_pred EEEEEcCCCEEEEEECCCCCEeeeecc-------CCCCCc---ceecCCCEE------ECCEEEEeCCCCCcCCCCEEEE
Confidence 366778899999999999997754221 000000 000111111 1334544433 588999
Q ss_pred EEccCCCcccceeEecc----------------------------CCCCEEEEEecCCCCcEEEEEEeCCC---------
Q 001386 423 YAYHGGSDARQQLEIDA----------------------------HVGNVNDLAFSAPCKQISVITCGDDK--------- 465 (1088)
Q Consensus 423 wd~~~~~~~~~~~~~~~----------------------------h~~~v~~~~~s~d~~~l~l~s~s~d~--------- 465 (1088)
+|..+|+.+-......+ +......+++.+++. .++.++.++
T Consensus 183 ~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~--~vy~~~~~g~~w~~~~~~ 260 (668)
T 1kv9_A 183 YDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD--LLYVGTGNGSPWNREVRS 260 (668)
T ss_dssp EETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT--EEEEECCCEESSCHHHHS
T ss_pred EECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC--EEEEeCCCCCccccCCCC
Confidence 99999986553321111 111123468888877 566666555
Q ss_pred ----------cEEEEeCCCCceeEEecc--CC-------ccEEEEeeeeeCCce---EEEEEecCCeEEEEECCCCCceE
Q 001386 466 ----------TIKVWDAVTGSRTYSFEG--HG-------APVYSLCPHAKENIH---FIFSISVDGKIKAWLYDSLGARV 523 (1088)
Q Consensus 466 ----------~i~vwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~ 523 (1088)
.|..+|..+|+.+..+.. |. .+.....+. .+|+ .++.++.+|.+.++|..+++.+.
T Consensus 261 ~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~--~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~ 338 (668)
T 1kv9_A 261 PGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELN--IDGKPRKVLMQAPKNGFFYVLDRTNGKLIS 338 (668)
T ss_dssp TTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE--ETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred CCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEec--cCCcEEEEEEEECCCCEEEEEECCCCCEec
Confidence 499999999999987754 22 222222221 1443 68899999999999999888763
Q ss_pred EecCCC------------Cc------------------------eEEEEEccCCCEEEEEeeC-----------------
Q 001386 524 DYDAPG------------LG------------------------CTRMAYSANGRRLFSCGTS----------------- 550 (1088)
Q Consensus 524 ~~~~~~------------~~------------------------v~~~~~s~~g~~l~~~~~~----------------- 550 (1088)
...... .+ -..++++|+...+++...+
T Consensus 339 ~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~ 418 (668)
T 1kv9_A 339 AEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKA 418 (668)
T ss_dssp EEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSS
T ss_pred cccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccc
Confidence 322111 00 1126788888777653220
Q ss_pred ---------------CCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEE
Q 001386 551 ---------------KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615 (1088)
Q Consensus 551 ---------------~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~ 615 (1088)
...++.|.-||+.+|+.+-...... ......+...+..+++++.|+.++.||..+|+.+..
T Consensus 419 ~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~----~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~ 494 (668)
T 1kv9_A 419 FNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT----HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQ 494 (668)
T ss_dssp CCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS----SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred cccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC----CCcCceeEeCCCEEEEECCcccchhhhhhcChhheE
Confidence 0123779999999999887766433 233334455788999999999999999999999999
Q ss_pred EeCCCCCCCCceEEEecCCCE-EEEEe
Q 001386 616 IDAGGGLPENPRICFNKNGTL-LAVIA 641 (1088)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~-l~~~~ 641 (1088)
+...... ...-+.+..+|+. ++++.
T Consensus 495 ~~~~~~~-~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 495 FEAQSGI-VAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp EECSSCC-CSCCEEEEETTEEEEEEEE
T ss_pred ecCCCCc-ccCceEEEECCEEEEEEEe
Confidence 8876432 1234566667764 44433
No 257
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.67 E-value=3.8e-05 Score=89.61 Aligned_cols=150 Identities=12% Similarity=0.075 Sum_probs=96.7
Q ss_pred CeEEEEEcCCceeeeeecc--cc--------CCeeEEEEC-CCCC---EEEEEeCCCcEEEEEcCCCceeeeeeeec---
Q 001386 862 STILIYNARSSEVISKLEG--HS--------KRVTGLVFS-DALN---ILVSSGGDAQIFVWDVDGWGIQTCRSLQT--- 924 (1088)
Q Consensus 862 g~i~lwd~~~~~~~~~l~~--h~--------~~V~~l~~s-~dg~---~las~s~Dg~i~iwd~~~~~~~~~~~~~~--- 924 (1088)
+.|.-+|..+|+.+..++. |. .++. +... .+|+ .++.++.+|.++++|..+++..-......
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 6899999999999877643 32 1221 1221 4674 78889999999999999987543222110
Q ss_pred ---------------CCCCc--------cC---------C--CCeEEEEEcCCCCEEEE-Ee------------------
Q 001386 925 ---------------PDGVM--------TL---------A--PSETHIQFHKDQTRFLL-VH------------------ 951 (1088)
Q Consensus 925 ---------------~~~~~--------~~---------~--~~v~~~~fs~dg~~l~~-~~------------------ 951 (1088)
..... .. . ..-..++++|+...+.+ ..
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 00000 00 0 00124677877665544 21
Q ss_pred ---------------CCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEecc
Q 001386 952 ---------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1014 (1088)
Q Consensus 952 ---------------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 1014 (1088)
++.|..||+.+|+.+.+...+. ++..-.....|..+++++.||.++.||..+|+.+.++..
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC--CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 4679999999999887654322 222222334577888899999999999999999998874
No 258
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.66 E-value=5e-05 Score=88.64 Aligned_cols=380 Identities=12% Similarity=0.077 Sum_probs=203.3
Q ss_pred EEEEeCCCcEEEEeCCCCceeEEeccCCccE---------EEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCC
Q 001386 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPV---------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP 528 (1088)
Q Consensus 458 l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 528 (1088)
++.++.++.|.-+|..+|+.+.++....... ..+++ .+..++.++.|+.|.-+|.++++.+......
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 4445553449999999999988775432210 11122 2246788889999999999999988765543
Q ss_pred CC----ceE-EEEEcc---CCC-EEEEEeeCC--CCceeEEEEeCCCCceeEEEeccccc--------------------
Q 001386 529 GL----GCT-RMAYSA---NGR-RLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ-------------------- 577 (1088)
Q Consensus 529 ~~----~v~-~~~~s~---~g~-~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~-------------------- 577 (1088)
.. .+. ...+.. +|+ .++++.... ..++.|+-+|..+|+.+-........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 21 111 111111 244 444443211 12567999999999987665432100
Q ss_pred ------------------cccEEEEEEeCCCCEEEEEeC--------------------C----CcEEEEEcCCCeeeEE
Q 001386 578 ------------------HNSVSVVHFDTAKDQILAAGD--------------------D----HVIKIWDMNKVQLLTT 615 (1088)
Q Consensus 578 ------------------~~~v~~~~~~~~~~~l~~~s~--------------------d----g~i~iwd~~~~~~~~~ 615 (1088)
...-..+++.|+...++.+.. | +.|..+|..+|+.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 000123567777788887663 2 5899999999999988
Q ss_pred EeCCCCC----CCCc-eEEEe---cCCC---EEEEEeCCCcEEEEeCCCCCcccccccccC--cceeeeecCCCcceecc
Q 001386 616 IDAGGGL----PENP-RICFN---KNGT---LLAVIANENRIKILETPESNSVDAAGVLSD--NLRKLSVNPISTVTGAG 682 (1088)
Q Consensus 616 ~~~~~~~----~~v~-~v~~s---~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~~~~ 682 (1088)
++...+. ..+. -+.+. .+|+ .++.++.+|.++++|..+++.+........ ....+...
T Consensus 307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~--------- 377 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLK--------- 377 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTT---------
T ss_pred EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcccccccccc---------
Confidence 8653221 0111 12222 4674 788899999999999999987765443211 01111000
Q ss_pred ccCCceeecCCCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEE
Q 001386 683 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR 762 (1088)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~ 762 (1088)
.+.........+.. +. . ..+........|.......-..++++|+...+++...+-...++.
T Consensus 378 --~g~p~~~~~~~~~~--~~-----------~---~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~ 439 (582)
T 1flg_A 378 --TGRPVEREGQRPPL--PE-----------P---GQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWT 439 (582)
T ss_dssp --TCCEEECTTCSCCC--CC-----------T---TCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEE
T ss_pred --CCCEeEccccCCcc--cc-----------c---cccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeec
Confidence 00000000000000 00 0 000000111122211111123567888877777766554444433
Q ss_pred ccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCe
Q 001386 763 WPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTA 842 (1088)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i 842 (1088)
.+.. ...| ....-..+...|++ ...+|.|..||+.+++.+.+........
T Consensus 440 ~~~~--------------~~~g------------~~~~g~~~~~~p~~----~~~~G~l~A~D~~tG~~~W~~~~~~~~~ 489 (582)
T 1flg_A 440 EEVS--------------YTKG------------SAYLGMGFRIKRMY----DDHVGSLRAMDPVSGKVVWEHKEHLPLW 489 (582)
T ss_dssp CCCC--------------CCTT------------SCCCCEEEEEEESC----SSCSEEEEEECTTTCCEEEEEEESSCCC
T ss_pred cccc--------------ccCC------------CceeccceeecCCC----CCCcceEEEEECCCCCEEEEecCCCCCc
Confidence 2110 0011 11111122222331 0125789999999999887765332211
Q ss_pred E-EEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCe-eEEEECCCCCE-EEEEe
Q 001386 843 T-SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNI-LVSSG 901 (1088)
Q Consensus 843 ~-~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~~-las~s 901 (1088)
. .++. .+.++++|+.||.++.||.++|+.+.+++...+.+ .-+.+..+|+. +++.+
T Consensus 490 ~g~~~t---agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 490 AGVLAT---AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTV 548 (582)
T ss_dssp SCCEEE---TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred ccceEe---CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEc
Confidence 1 1222 34578889999999999999999998887644322 22666677764 44433
No 259
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.65 E-value=3.8e-05 Score=89.54 Aligned_cols=178 Identities=10% Similarity=-0.074 Sum_probs=111.1
Q ss_pred EEEEecCCCEEEEEe-C----------------CcEEEEEcCCceeEEEecCC--C-------CCeEEEEEcCCCC---c
Q 001386 803 CFALSKNDAYLFSAS-G----------------GVISLYIVMTFKTILTIMPP--S-------PTATSLAFNPHDN---N 853 (1088)
Q Consensus 803 ~~~~s~dg~~l~~~~-d----------------g~i~iwd~~~~~~~~~~~~~--~-------~~i~~l~~sp~d~---~ 853 (1088)
.+++.++...+..+. + +.|..+|..+|+.+..++.. . ....-+.... ++ +
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~-~G~~~~ 317 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPV-NGKMTP 317 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEE-TTEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEeccc-CCcEEE
Confidence 356667666666554 1 25999999999998877532 1 1111122234 56 4
Q ss_pred EEEEEeCCCeEEEEEcCCceeeeeecccc-------------CCe--------------------------eEEEECCCC
Q 001386 854 VIAIGMDDSTILIYNARSSEVISKLEGHS-------------KRV--------------------------TGLVFSDAL 894 (1088)
Q Consensus 854 ~lasg~~dg~i~lwd~~~~~~~~~l~~h~-------------~~V--------------------------~~l~~s~dg 894 (1088)
+++.++.+|.++++|..+|+.+...+... .++ ..++++|+.
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 67889999999999999999876654211 111 246788887
Q ss_pred CEEEEEe-------------------------------------CCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEE
Q 001386 895 NILVSSG-------------------------------------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 937 (1088)
Q Consensus 895 ~~las~s-------------------------------------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 937 (1088)
.++.... .+|.|..||+.+++..-.... .. .+..
T Consensus 398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~--~~-------~~~~ 468 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE--KF-------AAWG 468 (571)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE--SS-------CCCS
T ss_pred CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecC--CC-------Cccc
Confidence 7776653 357899999988764322211 11 1112
Q ss_pred EEEcCCCCEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEE
Q 001386 938 IQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF 990 (1088)
Q Consensus 938 ~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~ 990 (1088)
..+...+..+.+ +.|+.|+.||..+|+.+.++..++......+.+..||+.++
T Consensus 469 ~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 469 GTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp BCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred eeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEE
Confidence 222333444444 57899999999999999887655432223345678887544
No 260
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.63 E-value=1.7e-05 Score=92.32 Aligned_cols=385 Identities=11% Similarity=0.041 Sum_probs=204.0
Q ss_pred EEEEEeC-CCcEEEEeC-CCCceeEEeccCCcc-----------EEEEeeeeeCC--ceEEEEEecCCeEEEEECCCCCc
Q 001386 457 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGAP-----------VYSLCPHAKEN--IHFIFSISVDGKIKAWLYDSLGA 521 (1088)
Q Consensus 457 ~l~s~s~-d~~i~vwd~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~ 521 (1088)
.++.++. ++.|.-+|. .+|+.+.++...... ...+++.+..+ ...++.++.|+.|..+|..+++.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~ 143 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET 143 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence 4566666 888999999 899998877543211 01123311111 12378888999999999999998
Q ss_pred eEEecCCCC----ceEE-EEEccCCCEEEEEeeCC--CCceeEEEEeCCCCceeEEEecccccc----------------
Q 001386 522 RVDYDAPGL----GCTR-MAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQH---------------- 578 (1088)
Q Consensus 522 ~~~~~~~~~----~v~~-~~~s~~g~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~---------------- 578 (1088)
+........ .+.+ ..+ .++ .+++++... ..++.|+-+|..+|+.+-.+.......
T Consensus 144 ~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g 221 (599)
T 1w6s_A 144 VWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG 221 (599)
T ss_dssp EEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence 776554321 1111 111 144 444443211 125679999999999887765432000
Q ss_pred ------------------ccE-EEEEEeCCCCEEEEEeCC----------------CcEEEEEcCCCeeeEEEeCCCCCC
Q 001386 579 ------------------NSV-SVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGLP 623 (1088)
Q Consensus 579 ------------------~~v-~~~~~~~~~~~l~~~s~d----------------g~i~iwd~~~~~~~~~~~~~~~~~ 623 (1088)
..+ ..+++.++...++.++.+ +.|..+|..+|+.+..++...+..
T Consensus 222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~ 301 (599)
T 1w6s_A 222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE 301 (599)
T ss_dssp CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence 000 134566777888887765 379999999999998887543210
Q ss_pred ----CCce-EEEe---cCC---CEEEEEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecC
Q 001386 624 ----ENPR-ICFN---KNG---TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 692 (1088)
Q Consensus 624 ----~v~~-v~~s---~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~ 692 (1088)
.... +.+. .+| ..++.++.+|.+.++|..+++.+.........-..-.+. ...+......
T Consensus 302 wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~---------~~~g~p~~~~ 372 (599)
T 1w6s_A 302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVD---------LKTGQPVRDP 372 (599)
T ss_dssp SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEEC---------TTTCCEEECG
T ss_pred ccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccc---------cCCCceeecc
Confidence 0111 2222 467 567778899999999999998765443211000000000 0000000000
Q ss_pred CCCCCCCcccccccCccceeccccccCCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCC
Q 001386 693 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 772 (1088)
Q Consensus 693 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~ 772 (1088)
...+ .+.....+..|.......-..++++|+...+++...+....++-....
T Consensus 373 ~~~~----------------------~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~------ 424 (599)
T 1w6s_A 373 EYGT----------------------RMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLP------ 424 (599)
T ss_dssp GGCC----------------------CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC------
T ss_pred ccCC----------------------CCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeeccccc------
Confidence 0000 000111122222222223346789999888877766543333211100
Q ss_pred CCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEE-EEEcCCC
Q 001386 773 EVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATS-LAFNPHD 851 (1088)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~-l~~sp~d 851 (1088)
...+.... ..-..+..+|.+........|.|..||+.+++.+............ ++. .
T Consensus 425 --------~~~g~~~~----------g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t---a 483 (599)
T 1w6s_A 425 --------YKAGQFFV----------GATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMAT---A 483 (599)
T ss_dssp --------CCTTSCCC----------CEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEE---T
T ss_pred --------ccCCccee----------cccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEe---c
Confidence 00011000 0000011112110000002467888999999888776422111111 222 3
Q ss_pred CcEEEEEeCCCeEEEEEcCCceeeeeeccccCCe-eEEEECCCCCE-EEEEe
Q 001386 852 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNI-LVSSG 901 (1088)
Q Consensus 852 ~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~~-las~s 901 (1088)
+.+++.|+.||.++.||.++|+.+.+++-..+.+ .-+.+..+|+. +++.+
T Consensus 484 gg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~ 535 (599)
T 1w6s_A 484 GDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYY 535 (599)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEc
Confidence 4577779999999999999999998886443222 22555567754 44433
No 261
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.63 E-value=0.0034 Score=76.64 Aligned_cols=571 Identities=13% Similarity=0.081 Sum_probs=299.3
Q ss_pred CCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~ 414 (1088)
..|.++.-..+|...++ +.+| +..||-..-+.... . .......|.++....+| .|..|
T Consensus 22 n~V~~I~qD~~G~lWig--T~~G-L~ryDG~~~~~~~~--------------~----~~~~~~~i~~i~~d~~g-~lWig 79 (758)
T 3ott_A 22 SVVSCFLQDSEGLIWIG--SNKG-LFSYDGYSTQQHFT--------------Y----GENNNTRIYCGVIIDNT-YLYMG 79 (758)
T ss_dssp CCEEEEEECTTSCEEEE--ESSC-EEEECSSCEEECSC--------------T----TSTTSSCEEEEEEETTT-EEEEE
T ss_pred ceEEEEEECCCCCEEEE--ECCC-ccccCCCceEEEEc--------------c----CCCCCceEEEEEEcCCC-cEEEE
Confidence 47999999999974443 4555 55666322110000 0 01124568888877766 56666
Q ss_pred eCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEec----cCCccEEE
Q 001386 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE----GHGAPVYS 490 (1088)
Q Consensus 415 ~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~----~~~~~v~~ 490 (1088)
+.+| +..||..+++.... .......|.++.. .+|. +..++.+ -+..+|..+++...... .....|.+
T Consensus 80 T~~G-l~~yd~~~~~f~~~---~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~ 150 (758)
T 3ott_A 80 TDNG-ILVYNYRADRYEQP---ETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYS 150 (758)
T ss_dssp ETTE-EEEEETTTTEECCC---SCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEE
T ss_pred eCCC-eEEEeCCCCEEECc---ccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEE
Confidence 6666 88999887542211 1112335777654 3554 4445545 58889987765432211 12345776
Q ss_pred EeeeeeCCceEEEEEecCCeEEEEECCCCCceEEe-cC----CCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001386 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1088)
Q Consensus 491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~----~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1088)
+.. +.++.+.+ ++.+ -+..++..+....... .. ....|.++...+++..|..++. +-+..+|..++
T Consensus 151 i~~--d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-----~Gl~~~~~~~~ 221 (758)
T 3ott_A 151 IIR--TKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-----GYLFQYFPSTG 221 (758)
T ss_dssp EEE--CTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-----EEEEEEETTTT
T ss_pred EEE--cCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-----CCCeEEcCCCC
Confidence 654 44554444 5544 4667776654432211 11 1224788888887776555542 12888998877
Q ss_pred ceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCC------CCCCCceEEEecCCCEEEE
Q 001386 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG------GLPENPRICFNKNGTLLAV 639 (1088)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~v~~s~~~~~l~~ 639 (1088)
+........ ...|.++....+|...+ |+. +-+.+++..+++.. .+.... ....|.++....+|.+- +
T Consensus 222 ~~~~~~~l~---~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-i 294 (758)
T 3ott_A 222 QIKQTEAFH---NNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQ-HIIHDSRNIQSLTNNIIWNIFADQEHNIW-L 294 (758)
T ss_dssp EEEEEEEEE---EEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCE-EECCCTTCTTSCSCSCEEEEEECTTCCEE-E
T ss_pred eEEeccCCC---CCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEE-EEEcCCCCcCcCCcCeEEEEEEcCCCCEE-E
Confidence 543322111 24688888777766554 454 45888888766543 222111 11236667666666544 4
Q ss_pred EeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceeccccccC
Q 001386 640 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 719 (1088)
Q Consensus 640 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~ 719 (1088)
|+..| +.++.... ...... .. .
T Consensus 295 GT~~G-l~~~~~~~--~~~~~~----------~~----------------------------------------~----- 316 (758)
T 3ott_A 295 GTDYG-ISLSRYNS--ALQFIP----------IS----------------------------------------Q----- 316 (758)
T ss_dssp EESSS-EEEECCCC---CEEEE----------HH----------------------------------------H-----
T ss_pred EeCCc-ccccccCC--ceeEEe----------cc----------------------------------------c-----
Confidence 44555 44332211 000000 00 0
Q ss_pred CCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCC
Q 001386 720 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQE 799 (1088)
Q Consensus 720 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1088)
.........|.++....+|...+. +.+| +..++...+.. .....+..... ...-...
T Consensus 317 --------~~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~-----~~~~~~~~~~~--------~~~l~~~ 373 (758)
T 3ott_A 317 --------ITGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGER-----HDAIWYRMGDK--------TYPLSHN 373 (758)
T ss_dssp --------HSCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSC-----CCCEEECTTCS--------SSCCSCS
T ss_pred --------CCCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeeccccccc-----ceeEEeccCCc--------CCCCCCC
Confidence 000001235677777777775544 4445 33333221100 00001110000 0001245
Q ss_pred CeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEe--cC----CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc-
Q 001386 800 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI--MP----PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS- 872 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~--~~----~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~- 872 (1088)
.|.++.-.++|.+.+.. ++-+..||..+++...-. .. ....|.++...+ ++. |-.|+..+-+.++|..+.
T Consensus 374 ~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigT~~~Gl~~~~~~~~~ 450 (758)
T 3ott_A 374 RIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQ-LWISTCLGGIFVVDKHKLM 450 (758)
T ss_dssp CEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSE-EEEEESSSCEEEEEHHHHH
T ss_pred ceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCC-EEEEECCCceEEEcccccc
Confidence 68899888888876654 667999998877544321 11 234678888876 554 555776666888886531
Q ss_pred -----eee--eeec---c-ccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEc
Q 001386 873 -----EVI--SKLE---G-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH 941 (1088)
Q Consensus 873 -----~~~--~~l~---~-h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs 941 (1088)
... ..+. + ....|.++...++|.+.+.++..+-|..+|..+++... +.. ... .....+.++...
T Consensus 451 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~---~~~-~~~-~~~~~~~~i~~d 525 (758)
T 3ott_A 451 QSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTK---LFA-DEL-TGEKSPNYLLCD 525 (758)
T ss_dssp HCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEE---ECT-TTS-CGGGCEEEEEEC
T ss_pred ccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEE---ecC-CCc-CCCcccceEEEC
Confidence 111 1111 1 12358999999999987644444458888988754322 111 110 001247888889
Q ss_pred CCCCEEEEEeCCeEEEEEcCcceeeeeeecC-CCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCC
Q 001386 942 KDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1020 (1088)
Q Consensus 942 ~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~ 1020 (1088)
.+|.+.+.+. +.+..|+..+++...-...+ ....|.++... +|. |-.++..| +..+|..+..... +. ++.
T Consensus 526 ~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~-lWi~t~~G-l~~~~~~~~~~~~-~~----~~~ 596 (758)
T 3ott_A 526 EDGLLWVGFH-GGVMRINPKDESQQSISFGSFSNNEILSMTCV-KNS-IWVSTTNG-LWIIDRKTMDARQ-QN----MTN 596 (758)
T ss_dssp TTSCEEEEET-TEEEEECC--CCCCBCCCCC---CCEEEEEEE-TTE-EEEEESSC-EEEEETTTCCEEE-C------CC
T ss_pred CCCCEEEEec-CceEEEecCCCceEEecccCCCccceEEEEEC-CCC-EEEECCCC-eEEEcCCCceeEE-ec----CCC
Confidence 9998887664 56888987766533210111 13567777763 665 44455555 7778888776432 11 111
Q ss_pred CCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001386 1021 TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1058 (1088)
Q Consensus 1021 ~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~ 1058 (1088)
. ... .++...+ +| .|..|+.+| +..+++..
T Consensus 597 ~----~~~-~~~~~~~-~G-~l~fG~~~G-l~~f~p~~ 626 (758)
T 3ott_A 597 K----RFT-SLLFDPK-ED-CVYLGGADG-FGISHSNL 626 (758)
T ss_dssp C----CCS-EEEEETT-TT-EEEEECBSE-EEEEEC--
T ss_pred C----cee-eeEEECC-CC-cEEEecCCc-eEEEChhh
Confidence 1 111 2222333 44 466677777 45556644
No 262
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.58 E-value=6e-06 Score=82.89 Aligned_cols=186 Identities=12% Similarity=0.104 Sum_probs=126.7
Q ss_pred CCeeEEEEecCCCEEEEEe-CC--cEEEEEcCCceeEEEecCCCCC-eEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee
Q 001386 799 EAVPCFALSKNDAYLFSAS-GG--VISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 874 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~-i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~ 874 (1088)
.....+.|+ ++.++.+++ +| .|+.+|+.+++.+..+...... .-.+++. ++++.+....++.+.+||..+.+.
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCE
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcE
Confidence 334788998 666555555 44 7999999999999888644322 2335554 445666666789999999999999
Q ss_pred eeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCC
Q 001386 875 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HET 953 (1088)
Q Consensus 875 ~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~ 953 (1088)
+.++.... ....+++|++.|+.+..++.|.++|..+.+......+.. .+... ..+..+.|. +|+..+.. .++
T Consensus 120 ~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~~--~~lNELe~~-~G~lyan~w~~~ 192 (262)
T 3nol_A 120 VRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEEL--PELNELEWV-DGEIFANVWQTN 192 (262)
T ss_dssp EEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTSS
T ss_pred EEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCccc--cccceeEEE-CCEEEEEEccCC
Confidence 99887532 223344677777766667889999998866443322221 11111 134557776 77766555 567
Q ss_pred eEEEEEcCcceeeeeeecCC-----------CcCEEEEEEeeCCCEEEEEeC
Q 001386 954 HLAIYEAEELTCLKQWFPIS-----------SVPISQATFSCDCRMVFTSFV 994 (1088)
Q Consensus 954 ~i~vwd~~~~~~~~~~~~~h-----------~~~v~~l~fs~dg~~l~s~s~ 994 (1088)
.|.+.|.++|+.+..+...- ..-...+||+|+++.|++.+.
T Consensus 193 ~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 193 KIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred eEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 99999999999988764321 235688999999888877664
No 263
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.58 E-value=2.5e-06 Score=85.58 Aligned_cols=198 Identities=11% Similarity=0.060 Sum_probs=129.8
Q ss_pred eeEEEecCCCC--CeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccCCe--eEEEECCCCCEEEEEeCCCc
Q 001386 830 KTILTIMPPSP--TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV--TGLVFSDALNILVSSGGDAQ 905 (1088)
Q Consensus 830 ~~~~~~~~~~~--~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h~~~V--~~l~~s~dg~~las~s~Dg~ 905 (1088)
+.+.++. |.. ....+.|+ ++.++.+.+.+|.|+++|+.+++.+..+ -. ... ..+++..+ +..+..-.++.
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~-~Ly~ltw~~~~ 117 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGE-RLYQLTWTEGL 117 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSS-CEEEEESSSCE
T ss_pred EEEEEEc-CCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCC-EEEEEEccCCE
Confidence 3444553 443 45788997 4678888889999999999999988776 22 233 33555433 44444456889
Q ss_pred EEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCCeEEEEEcCcceeeeeeecC-CC---cCEEEE
Q 001386 906 IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPI-SS---VPISQA 980 (1088)
Q Consensus 906 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~-h~---~~v~~l 980 (1088)
+.+||..+.+........ .+ ...+++|++.|.++ .+++|.++|..+.+.+..+... +. ..+..+
T Consensus 118 v~V~D~~Tl~~~~ti~~~-~e----------GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeL 186 (268)
T 3nok_A 118 LFTWSGMPPQRERTTRYS-GE----------GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINEL 186 (268)
T ss_dssp EEEEETTTTEEEEEEECS-SC----------CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred EEEEECCcCcEEEEEeCC-Cc----------eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccccccc
Confidence 999999986644332221 11 12344678888775 4778999999999988776542 22 245667
Q ss_pred EEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCC---CccccccceEEEECCCCCCEEEEE
Q 001386 981 TFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT---TSCLHVYPHAIAAHPLKPTQFAVG 1045 (1088)
Q Consensus 981 ~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~d~~~l~~~ 1045 (1088)
.|. ||+..+..-.+..|.+-|..+|+.+..+......+.. ......-+..||++|+...+++||
T Consensus 187 e~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 187 ECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 776 7765555546889999999999999988855322111 001112346799999555566655
No 264
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.58 E-value=6.2e-06 Score=82.80 Aligned_cols=185 Identities=14% Similarity=0.070 Sum_probs=129.6
Q ss_pred EEEEEecCCCCcEEEEEEeCCC--cEEEEeCCCCceeEEeccCCccE-EEEeeeeeCCceEEEEEecCCeEEEEECCCCC
Q 001386 444 VNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLG 520 (1088)
Q Consensus 444 v~~~~~s~d~~~l~l~s~s~d~--~i~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 520 (1088)
...+.|+ ++. ++.+.+.+| .|+++|+++|+.+.++....... ..+++ .. +...+..-.++.+.+||.++.+
T Consensus 45 tqGL~~~-~~~--LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g-~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 45 TEGFFYR-NGY--FYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WK-DKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp EEEEEEE-TTE--EEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ET-TEEEEEESSSSEEEEEETTTCC
T ss_pred cceEEEE-CCE--EEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eC-CEEEEEEeeCCEEEEEECccCc
Confidence 4778888 554 666777665 89999999999998886433221 22433 32 3455555668999999999999
Q ss_pred ceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEecccc--ccccEEEEEEeCCCCEEEEEeC
Q 001386 521 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGD 598 (1088)
Q Consensus 521 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~s~ 598 (1088)
.+..+...... ..+++|++.|+... +...|.++|..+.+.+..+..... .-..++.+.|. +|...+..-.
T Consensus 119 ~~~ti~~~~eG---~glt~dg~~L~~Sd----Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~ 190 (262)
T 3nol_A 119 QVRSFNYDGEG---WGLTHNDQYLIMSD----GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ 190 (262)
T ss_dssp EEEEEECSSCC---CCEEECSSCEEECC----SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred EEEEEECCCCc---eEEecCCCEEEEEC----CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc
Confidence 88877764432 34457888887753 356799999999999888765320 01335567776 6654444446
Q ss_pred CCcEEEEEcCCCeeeEEEeCCCC----------CCCCceEEEecCCCEEEEEeC
Q 001386 599 DHVIKIWDMNKVQLLTTIDAGGG----------LPENPRICFNKNGTLLAVIAN 642 (1088)
Q Consensus 599 dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~v~~s~~~~~l~~~~~ 642 (1088)
+..|.+.|..+|+.+..+...+- ....+.+|++|+++.|.+.+.
T Consensus 191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 88999999999999999876421 123478999998877776664
No 265
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.54 E-value=1e-05 Score=98.34 Aligned_cols=248 Identities=10% Similarity=-0.006 Sum_probs=135.0
Q ss_pred Cceeeeec-CCCCeEEEEEcccC----cEEEEecCCC-cceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCC
Q 001386 336 SPMSMDFH-PVQHTLLLVGTNVG----DTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1088)
Q Consensus 336 ~V~~v~~s-pdg~~lla~g~~dg----~i~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~ 409 (1088)
.+...+|| |||++++.+.+.+| +|+++|+.+| +.+.. . +. .....++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~~---~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------VS---GTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------EE---EECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------cc---CceeeEEEecCCC
Confidence 67889999 99996554444333 5999999998 63321 0 10 1134688999999
Q ss_pred EEEEEeCC-----CEEEEEEccCCCcccceeEec-cCCCCEEEEEecCCCCcEEEEEEe-CCCcEEEEeCCCCc-ee--E
Q 001386 410 LLGVAYSK-----HIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDAVTGS-RT--Y 479 (1088)
Q Consensus 410 ~las~~~d-----g~i~vwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~s-~d~~i~vwd~~~~~-~~--~ 479 (1088)
.|+....+ ..|.++++.++...... .+. ........+.|||||+.+++.+.. ....|.++|+.++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDVC-LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCEE-EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcEE-EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 99888765 25888888776432111 222 223456788999999963333322 23468888988763 22 3
Q ss_pred Ee-ccCCccEEEEeeeeeCCceEEEEEecC----CeEEEEECCCCCceEE-ecCCCC--ceEEEEEccCCCEEEEEeeCC
Q 001386 480 SF-EGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVD-YDAPGL--GCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 480 ~~-~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~-~~~~~~--~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
.+ ........++.|+ .++.+++....+ ..|..+|+.+...... +..+.. .+..+. +++..|+.... .
T Consensus 313 ~l~~~~~~~~~s~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~--~~~~~lv~~~~-~ 387 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMH--GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIA--VRSNYLVVAGR-R 387 (751)
T ss_dssp ESSCCCTTCCEEEEEE--TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEE--ECSSEEEEEEE-E
T ss_pred EeecCCCCceEEEeee--eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEE--EECCEEEEEEE-e
Confidence 33 3334444554432 233444454443 2566677664222112 222333 334444 44666665543 2
Q ss_pred CCceeEEEEeC-------CCCceeEEEeccccccccEEEEEE----eCCCCEE-EEEeCC---CcEEEEEcCCCee
Q 001386 552 EGESFLVEWNE-------SEGAIKRTYQGLQLQHNSVSVVHF----DTAKDQI-LAAGDD---HVIKIWDMNKVQL 612 (1088)
Q Consensus 552 ~~~~~i~iwd~-------~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~l-~~~s~d---g~i~iwd~~~~~~ 612 (1088)
++...|+++++ .+++..+.+.... ...+..+.+ ++++..+ ++.+.. ..+..+|+.+++.
T Consensus 388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~--~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 388 AGLTRIWTMMADSQDGVFKAGTGLREVVMEE--PIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTEEEEEEEECCTTTSCCCTTTCCEECCCCC--SSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred CCEEEEEEEecccccccccCCccceEECCCC--ceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 44667888886 4444133332211 112233322 3455544 333322 4577778777653
No 266
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.51 E-value=4.7e-05 Score=82.25 Aligned_cols=238 Identities=11% Similarity=0.062 Sum_probs=146.9
Q ss_pred CeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecC--------------------CCCCeEEEEEcCCCCcEEEEE
Q 001386 800 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMP--------------------PSPTATSLAFNPHDNNVIAIG 858 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~--------------------~~~~i~~l~~sp~d~~~lasg 858 (1088)
...+++++++|.++.++. ++.|..|+..+++.. .+.. ....+..+++.+++++ |.++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~ 97 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV 97 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence 456788999998566665 788999988765432 2210 0135788999973454 4555
Q ss_pred eCCCeEEEEEcCCceeeeeec----c-ccCCeeEEEECC-CCCEEEEEeC-----------------CCcEEEEEcCCCc
Q 001386 859 MDDSTILIYNARSSEVISKLE----G-HSKRVTGLVFSD-ALNILVSSGG-----------------DAQIFVWDVDGWG 915 (1088)
Q Consensus 859 ~~dg~i~lwd~~~~~~~~~l~----~-h~~~V~~l~~s~-dg~~las~s~-----------------Dg~i~iwd~~~~~ 915 (1088)
...+.|..+|..+++. ..+. + .......+++.+ +|++.++... ++.|..||..+++
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 5555688899876643 2221 1 123478899999 9988776533 3678888887654
Q ss_pred eeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE--eCCeEEEEEcCcce--eeeeeecCCCcCEEEEEEeeCCCEEEE
Q 001386 916 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFT 991 (1088)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~--~d~~i~vwd~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~s 991 (1088)
.... ..... ....++|+|||+.|.++ ..+.|.+|++.... ....+.. ..+ ...+++.++|.+.++
T Consensus 177 ~~~~--~~~~~-------~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va 245 (322)
T 2fp8_A 177 TTLL--LKELH-------VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVS 245 (322)
T ss_dssp EEEE--EEEES-------CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEE
T ss_pred EEEe--ccCCc-------cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEE
Confidence 3221 11111 24579999999976664 45789999987521 1111111 123 788999999987666
Q ss_pred EeC----------CCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 992 SFV----------DGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 992 ~s~----------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~ 1060 (1088)
... .+.|..+|. .|+.+..+....-.. -..+..+++. ++.++++....+.|.++++....
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~------~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 246 SSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFA------GEHFEQIQEH--DGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp EEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTT------TSCCCEEEEE--TTEEEEECSSCSEEEEEEC----
T ss_pred ecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCc------cccceEEEEe--CCEEEEeecCCCceEEEeccccc
Confidence 544 466888886 477766665221100 1123445553 56777777788999999986544
No 267
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.51 E-value=2.5e-05 Score=77.83 Aligned_cols=210 Identities=10% Similarity=0.113 Sum_probs=133.1
Q ss_pred eeEEEecCCC--CCeEEEEEcCCCCcEEEEEeCCC--eEEEEEcCCceeeeeeccccCC-eeEEEECCCCCEEE-EEeCC
Q 001386 830 KTILTIMPPS--PTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILV-SSGGD 903 (1088)
Q Consensus 830 ~~~~~~~~~~--~~i~~l~~sp~d~~~lasg~~dg--~i~lwd~~~~~~~~~l~~h~~~-V~~l~~s~dg~~la-s~s~D 903 (1088)
+.+.++ .|. .....+.|++ +.++.+.+.+| .|+.+|+.+++.+..+.-.... -..+++. +..|. ..-.+
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~ 84 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRN 84 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSS
T ss_pred EEEEEc-CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeC
Confidence 445555 355 3467899985 56666666654 9999999999998877543221 1234443 44444 44568
Q ss_pred CcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCCeEEEEEcCcceeeeeeecC-CC---cCEE
Q 001386 904 AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPI-SS---VPIS 978 (1088)
Q Consensus 904 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~-h~---~~v~ 978 (1088)
+.+.++|..+.+........ + . ...+.+|+..|.++ .+++|.++|..+.+.+..+..+ +. ..+.
T Consensus 85 ~~v~v~D~~tl~~~~ti~~~---~-~-------Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lN 153 (243)
T 3mbr_X 85 HEGFVYDLATLTPRARFRYP---G-E-------GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLN 153 (243)
T ss_dssp SEEEEEETTTTEEEEEEECS---S-C-------CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred CEEEEEECCcCcEEEEEeCC---C-C-------ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccce
Confidence 89999999986644322221 1 1 13344677766664 4678999999999888776543 21 3455
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCc---cccccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001386 979 QATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTS---CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1055 (1088)
Q Consensus 979 ~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~ 1055 (1088)
.+.+. +|+..+..-.+..|.+.|..+|+.+..+......+.... ....-+..||++|+...+++||-.=-.++--.
T Consensus 154 eLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~ 232 (243)
T 3mbr_X 154 ELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIR 232 (243)
T ss_dssp EEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred eeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEE
Confidence 66655 676555554678999999999999999886654433211 11123478999995555555554434444444
Q ss_pred C
Q 001386 1056 P 1056 (1088)
Q Consensus 1056 l 1056 (1088)
+
T Consensus 233 ~ 233 (243)
T 3mbr_X 233 L 233 (243)
T ss_dssp E
T ss_pred E
Confidence 4
No 268
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.51 E-value=3.5e-06 Score=84.50 Aligned_cols=184 Identities=9% Similarity=0.080 Sum_probs=125.1
Q ss_pred CCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCC-CeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee
Q 001386 799 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 876 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~ 876 (1088)
.....+.|+. +.++++.+ +|.|+++|+++++.+..+ -... ..-.+++. ++++.+....++.+.+||..+.+.+.
T Consensus 55 ~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 55 AFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp CCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred cccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEE
Confidence 3456788873 44444444 688999999999998887 2222 22346665 45666667788999999999999999
Q ss_pred eeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCCeE
Q 001386 877 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHL 955 (1088)
Q Consensus 877 ~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i 955 (1088)
++..- ..-..++ +|++.|+.+..++.|.++|..+.+......+....... ..+..+.|. +|+..|.. .++.|
T Consensus 131 ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v---~~lNeLe~~-dG~lyanvw~s~~I 203 (268)
T 3nok_A 131 TTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPV---ELINELECA-NGVIYANIWHSSDV 203 (268)
T ss_dssp EEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEEC---CCEEEEEEE-TTEEEEEETTCSEE
T ss_pred EEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccc---ccccccEEe-CCEEEEEECCCCeE
Confidence 88753 2223444 67888887777889999999886644433322211111 135567776 77666555 46789
Q ss_pred EEEEcCcceeeeeeecC------------CCcCEEEEEEeeCCCEEEEEe
Q 001386 956 AIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSF 993 (1088)
Q Consensus 956 ~vwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~s~s 993 (1088)
.+.|.++|+.+..+..+ ...-...+|++|+++.|++.+
T Consensus 204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 99999999998876432 124568899999877666554
No 269
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.49 E-value=4.6e-05 Score=81.51 Aligned_cols=231 Identities=12% Similarity=0.084 Sum_probs=138.6
Q ss_pred CCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCC-C-eEEEEEcCCceee
Q 001386 799 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD-S-TILIYNARSSEVI 875 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d-g-~i~lwd~~~~~~~ 875 (1088)
.....++++++|+++++.. ++.|..||.... ....+. .......+++++ +++++++.... + .|..++..+++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEE
Confidence 4577899999999766664 788999998753 333332 335688999999 77766655432 2 5777787887653
Q ss_pred eeec-cccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeee---ee--cCCCCccCCCCeEEEEEcCCCCEEEE
Q 001386 876 SKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQ--TPDGVMTLAPSETHIQFHKDQTRFLL 949 (1088)
Q Consensus 876 ~~l~-~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~---~~--~~~~~~~~~~~v~~~~fs~dg~~l~~ 949 (1088)
.... ........++..+++..+++...++.|..+|..++....... +. ...+.. .....+ ++|+++|.+
T Consensus 109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~---~~pngi--s~dg~~lyv 183 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF---PAANGL--KRFGNFLYV 183 (306)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS---CSEEEE--EEETTEEEE
T ss_pred EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC---CcCCCc--CcCCCEEEE
Confidence 3222 112233556666666556655568888888876542111000 00 001111 123455 899987776
Q ss_pred E--eCCeEEEEEcCc-cee--eeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCcc
Q 001386 950 V--HETHLAIYEAEE-LTC--LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC 1024 (1088)
Q Consensus 950 ~--~d~~i~vwd~~~-~~~--~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 1024 (1088)
+ ..+.|.+|++.. ++. ...+.. ......+++++||.+.++....+.|.+++.. |+........ .+
T Consensus 184 ~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~--~~----- 253 (306)
T 2p4o_A 184 SNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE--QG----- 253 (306)
T ss_dssp EETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG--GT-----
T ss_pred EeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc--cc-----
Confidence 4 457899999874 332 111111 1345668999999887776678899999975 6653221100 01
Q ss_pred ccccceEEEEC---CCCCCEEEEEeCCC
Q 001386 1025 LHVYPHAIAAH---PLKPTQFAVGLTNG 1049 (1088)
Q Consensus 1025 ~~~~~~~~~~~---p~d~~~l~~~~~dg 1049 (1088)
.-.+.+++|. | |++.|.++...+
T Consensus 254 -~~~p~~~a~~g~~~-d~~~LyVt~~~~ 279 (306)
T 2p4o_A 254 -VIGSTAVAFGQTEG-DCTAIYVVTNGG 279 (306)
T ss_dssp -CTTEEEEEECCSTT-TTTEEEEEECTT
T ss_pred -cCCceEEEEecccC-CCCEEEEECCCC
Confidence 1347789998 7 666666655443
No 270
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.48 E-value=2.8e-05 Score=84.04 Aligned_cols=240 Identities=10% Similarity=-0.010 Sum_probs=147.4
Q ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEec-----------------cCCCCEEEEEecC-CCCcEEE
Q 001386 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-----------------AHVGNVNDLAFSA-PCKQISV 458 (1088)
Q Consensus 397 ~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~-----------------~h~~~v~~~~~s~-d~~~l~l 458 (1088)
....+++|+++|+++.++..++.|..||..+++. ..+.... .....+..+++.+ +++ |
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~---l 94 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ---L 94 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE---E
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCc---E
Confidence 4566789999999788888889999999876542 2111000 0123578999998 665 4
Q ss_pred EEEeCCCcEEEEeCCCCceeEEecc-----CCccEEEEeeeeeC-CceEEEEEec-----------------CCeEEEEE
Q 001386 459 ITCGDDKTIKVWDAVTGSRTYSFEG-----HGAPVYSLCPHAKE-NIHFIFSISV-----------------DGKIKAWL 515 (1088)
Q Consensus 459 ~s~s~d~~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~-~~~~l~s~~~-----------------dg~i~iwd 515 (1088)
+.+...+.|..+|..++.. ..+.. .......+++ .+ +|.+.++... +|.|..||
T Consensus 95 ~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~--d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 95 YIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTV--DQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp EEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEE--CTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred EEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEE--ecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence 4444445588899776543 22211 1123566766 45 5656555432 36788888
Q ss_pred CCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCc--eeEEEeccccccccEEEEEEeCCCCEE
Q 001386 516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQI 593 (1088)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l 593 (1088)
..+........ .......++++++|+.|+++.. ....|..++..... ....+.... + ...+++.++|+..
T Consensus 172 ~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~---~~~~I~~~~~~~~~~~~~~~~~~~~---g-P~gi~~d~~G~l~ 243 (322)
T 2fp8_A 172 PSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEF---LSHQIVKYWLEGPKKGTAEVLVKIP---N-PGNIKRNADGHFW 243 (322)
T ss_dssp TTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEG---GGTEEEEEESSSTTTTCEEEEEECS---S-EEEEEECTTSCEE
T ss_pred CCCCEEEEecc-CCccCcceEECCCCCEEEEEeC---CCCeEEEEECCCCcCCccceEEeCC---C-CCCeEECCCCCEE
Confidence 76554332211 1123456899999998777643 24569999887531 122222222 3 6788999999877
Q ss_pred EEEeC----------CCcEEEEEcCCCeeeEEEeCCCC--CCCCceEEEecCCCEEEEEeCCCcEEEEeCCC
Q 001386 594 LAAGD----------DHVIKIWDMNKVQLLTTIDAGGG--LPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1088)
Q Consensus 594 ~~~s~----------dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 653 (1088)
++... .+.|..+|. .++.+..+....+ ...+..+++ .+++++++....+.|..+++..
T Consensus 244 va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 244 VSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred EEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 66544 467888887 4777777765432 234566666 4666666666778899988763
No 271
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.42 E-value=3.9e-05 Score=76.38 Aligned_cols=187 Identities=10% Similarity=0.039 Sum_probs=126.6
Q ss_pred CCCeeEEEEecCCCEEEEEe-C--CcEEEEEcCCceeEEEecCCCCC-eEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce
Q 001386 798 QEAVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 873 (1088)
Q Consensus 798 ~~~v~~~~~s~dg~~l~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~-i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~ 873 (1088)
......+.|+. +.++.+.. + +.|+.+|+.+++.+..+.-.... --.+++. ++++.+....++.+.+||..+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 44567899986 44444444 3 47999999999999888644332 2345554 45666667789999999999999
Q ss_pred eeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eC
Q 001386 874 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE 952 (1088)
Q Consensus 874 ~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d 952 (1088)
.+.++.... .-..++ +|++.|+.+..++.|.++|..+.+......+.. .+... ..+..+.+. +|+..+.. .+
T Consensus 97 ~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~~--~~lNeLe~~-~G~lyanvw~s 169 (243)
T 3mbr_X 97 PRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRPL--DNLNELEWV-NGELLANVWLT 169 (243)
T ss_dssp EEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTT
T ss_pred EEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCccc--ccceeeEEe-CCEEEEEECCC
Confidence 999887532 224444 567776666668889999998866443322221 11110 134556655 77766555 56
Q ss_pred CeEEEEEcCcceeeeeeecC------------CCcCEEEEEEeeCCCEEEEEeC
Q 001386 953 THLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSFV 994 (1088)
Q Consensus 953 ~~i~vwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~s~s~ 994 (1088)
+.|.+.|.++|+.+..+..+ ...-...++++|+++.|++.+.
T Consensus 170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 79999999999998876432 1235688999998887776654
No 272
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.41 E-value=9.6e-05 Score=79.03 Aligned_cols=228 Identities=13% Similarity=0.099 Sum_probs=138.4
Q ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEe-CCC-cEEEEeCCC
Q 001386 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDK-TIKVWDAVT 474 (1088)
Q Consensus 397 ~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s-~d~-~i~vwd~~~ 474 (1088)
.....++|+++|+++++-..++.|..||..++. .. . + .....+..+++.++|+ ++++.. .++ .|..+|..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~-~--~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QI-H--A-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EE-E--E-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EE-E--E-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 457789999999977776688899999987532 11 1 1 2234688999999998 444443 333 477778788
Q ss_pred CceeEEecc-CCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEE-e-------c--CCCCceEEEEEccCCCE
Q 001386 475 GSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-Y-------D--APGLGCTRMAYSANGRR 543 (1088)
Q Consensus 475 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~-------~--~~~~~v~~~~~s~~g~~ 543 (1088)
|+....... .......++. ..++..+++...++.|.++|......... . . ..-.....+ +++++.
T Consensus 105 g~~~~~~~~~~~~~~~g~~~--~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITP--LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEE--SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCcccc--cCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 875432221 1222334443 23444455555688888888765422111 0 0 111123444 889988
Q ss_pred EEEEeeCCCCceeEEEEeCCC-Cce--eEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCCC
Q 001386 544 LFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620 (1088)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 620 (1088)
|+++.. ....|..++... ++. ...+... .....+++.++|+.+++....+.|.+++.. ++.........
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~~----~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~ 252 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVEQ----TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ 252 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEES----CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGG
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEecc----CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccc
Confidence 877653 355799999864 332 1222111 235668899999877777778899999975 65533222222
Q ss_pred CCCCCceEEEe---cCCCEEEEEeCC
Q 001386 621 GLPENPRICFN---KNGTLLAVIANE 643 (1088)
Q Consensus 621 ~~~~v~~v~~s---~~~~~l~~~~~d 643 (1088)
......+++|. |+++.|.+++..
T Consensus 253 ~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 253 GVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ccCCceEEEEecccCCCCEEEEECCC
Confidence 22346889998 887777776654
No 273
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.41 E-value=0.00062 Score=73.92 Aligned_cols=250 Identities=10% Similarity=-0.021 Sum_probs=154.8
Q ss_pred CCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEE
Q 001386 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1088)
Q Consensus 334 ~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las 413 (1088)
.+..+|.+..+++. ++++ . ...|+..++....... +......+..++|++.+..|..
T Consensus 33 ~d~~~C~~~~~~~~-ll~~-~-~~~I~~i~~~g~~~~~--------------------~~~~~~~~~~l~~d~~~~~ly~ 89 (349)
T 3v64_C 33 PDRRSCKALGPEPV-LLFA-N-RIDIRQVLPHRSEYTL--------------------LLNNLENAIALDFHHRRELVFW 89 (349)
T ss_dssp TTSSCEEESSSCCE-EEEE-C-BSCEEEECTTSCCEEE--------------------EECSCSCEEEEEEETTTTEEEE
T ss_pred CCCCcccccccCce-eEee-c-ccceEEEeCCCCeeEE--------------------eecCCCceEEEEEeccccEEEE
Confidence 34567777777553 4443 2 3568777776543221 1113345889999986665554
Q ss_pred E-eCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEe
Q 001386 414 A-YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 492 (1088)
Q Consensus 414 ~-~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 492 (1088)
+ ...+.|..+++.++.... .+.........+++.+.+.. ++++-...+.|.+.++........+...-.....++
T Consensus 90 ~D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~ia 165 (349)
T 3v64_C 90 SDVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIA 165 (349)
T ss_dssp EETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEE
T ss_pred EeccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEE
Confidence 4 467889999998764222 12222234578899886664 455666678899999775543333333345567888
Q ss_pred eeeeCCceEEEEEecC-CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEE
Q 001386 493 PHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1088)
Q Consensus 493 ~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1088)
+.+. ++.++++-... +.|...+++.................++++|++..|+.+-. +...|..+|.........+
T Consensus 166 vdp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~ 241 (349)
T 3v64_C 166 LHPM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVI 241 (349)
T ss_dssp EETT-TTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEE
T ss_pred EecC-cCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEE
Confidence 8543 44555565555 78888888765444433333445788999998888887642 3557999997654333333
Q ss_pred eccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeC
Q 001386 572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1088)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1088)
.... .....+++. .+..+++-...+.|..++..+|+....+..
T Consensus 242 ~~~~---~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 284 (349)
T 3v64_C 242 SQGL---PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRN 284 (349)
T ss_dssp CSSC---SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred eCCC---CCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEecc
Confidence 3222 456677773 444445555677888888777776666653
No 274
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.41 E-value=0.00046 Score=74.29 Aligned_cols=278 Identities=9% Similarity=0.052 Sum_probs=152.4
Q ss_pred ccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEE
Q 001386 735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF 814 (1088)
Q Consensus 735 ~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 814 (1088)
..+.++.+.+++..+++ +..|.+ |....+. +-|.... .........+.++.+.+ +..++
T Consensus 36 ~~~~~v~~~~~~~~~~~-G~~g~i--~~s~DgG---------~tW~~~~--------~~~~~~~~~~~~i~~~~-~~~~~ 94 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLV-GVNATL--METRDGG---------QTWEPRT--------LVLDHSDYRFNSVSFQG-NEGWI 94 (327)
T ss_dssp SCEEEEEESSSSCEEEE-ETTTEE--EEESSTT---------SSCEECC--------CCCSCCCCEEEEEEEET-TEEEE
T ss_pred CcEEEEEECCCCcEEEE-cCCCeE--EEeCCCC---------CCCeECC--------CCCCCCCccEEEEEecC-CeEEE
Confidence 46888888877776664 455544 2221111 1122111 00001244678899986 55666
Q ss_pred EEeCCcEEEEEcCCceeEEEec---CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceee-eeeccccCCeeEEEE
Q 001386 815 SASGGVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI-SKLEGHSKRVTGLVF 890 (1088)
Q Consensus 815 ~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~-~~l~~h~~~V~~l~~ 890 (1088)
++..+.|.. ....|+.-.... .+...+..+++.+ ++.+++++ .+|.|+. ....|+.- ....++...+..+++
T Consensus 95 ~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~ 170 (327)
T 2xbg_A 95 VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNR 170 (327)
T ss_dssp EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEE
T ss_pred EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEE
Confidence 666664433 333333333322 2334577888876 66666655 4565432 22223221 112345567899999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeeeeee
Q 001386 891 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF 970 (1088)
Q Consensus 891 s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~ 970 (1088)
.+++.+++.+...+..+-+|-.. . ....+.... . ..+..++++++++.++++.++.+++.+...|+.-....
T Consensus 171 ~~~~~~~~~g~~G~~~~S~d~gG-~--tW~~~~~~~--~---~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~ 242 (327)
T 2xbg_A 171 SPSGEYVAVSSRGSFYSTWEPGQ-T--AWEPHNRTT--S---RRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELL 242 (327)
T ss_dssp CTTSCEEEEETTSSEEEEECTTC-S--SCEEEECCS--S---SCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCB
T ss_pred cCCCcEEEEECCCcEEEEeCCCC-C--ceeECCCCC--C---CccceeEECCCCCEEEEeCCceEEEecCCCCCeeEecc
Confidence 99998887665444333344211 1 111222111 1 25789999999998888888888877544354433322
Q ss_pred cC---CCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeC
Q 001386 971 PI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLT 1047 (1088)
Q Consensus 971 ~~---h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~ 1047 (1088)
.+ +...+.++++.+++..++++ .+|.| .+..+.|+.-..+......+. .+ .++.|.+ +..+++++.
T Consensus 243 ~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~-----~~--~~v~~~~--~~~~~~~G~ 311 (327)
T 2xbg_A 243 SPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPS-----NF--YKILFFS--PDQGFILGQ 311 (327)
T ss_dssp CTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSS-----CC--CEEEEEE--TTEEEEECS
T ss_pred CCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCC-----Ce--EEEEEEC--CCceEEEcC
Confidence 12 23468899999888776655 57777 456666654433331111111 12 3466654 356778889
Q ss_pred CCcEEEEeC
Q 001386 1048 NGEVYVIEP 1056 (1088)
Q Consensus 1048 dg~v~~w~l 1056 (1088)
+|.|.-++-
T Consensus 312 ~G~i~~~~~ 320 (327)
T 2xbg_A 312 KGILLRYVT 320 (327)
T ss_dssp TTEEEEECC
T ss_pred CceEEEEcC
Confidence 998776653
No 275
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.38 E-value=0.00042 Score=76.48 Aligned_cols=248 Identities=10% Similarity=-0.019 Sum_probs=154.7
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEE-EE
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG-VA 414 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~la-s~ 414 (1088)
.-.|.+..+.+. ++++ . ...|+..++.++.... +......+..++|++.+..|. +-
T Consensus 78 ~~~C~~~~~~~~-l~~~-~-~~~I~~i~~~~~~~~~--------------------~~~~~~~~~gl~~d~~~~~ly~~D 134 (386)
T 3v65_B 78 RRSCKALGPEPV-LLFA-N-RIDIRQVLPHRSEYTL--------------------LLNNLENAIALDFHHRRELVFWSD 134 (386)
T ss_dssp SSCEEECSSCCE-EEEE-C-BSCEEEECTTSCCCEE--------------------EECSCSCEEEEEEETTTTEEEEEE
T ss_pred CCeECCccccce-eEee-c-CccceeeccCCCcEEE--------------------EecCCCccEEEEEecCCCeEEEEe
Confidence 455666666443 4443 2 3678888887654332 112334688999998655555 44
Q ss_pred eCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeee
Q 001386 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1088)
Q Consensus 415 ~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 494 (1088)
...+.|..+++.++.... .+.........+++.+.+.. ++++-...+.|.+.++........+...-.....+++.
T Consensus 135 ~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavd 210 (386)
T 3v65_B 135 VTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH 210 (386)
T ss_dssp TTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEE
T ss_pred CCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEE
Confidence 567889999998764221 12222234567888876664 45556667789998876554333343334566788885
Q ss_pred eeCCceEEEEEecC-CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEec
Q 001386 495 AKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 573 (1088)
Q Consensus 495 ~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 573 (1088)
+. ++.++++-... +.|...+++.................++++|++..|+.+-. ....|..+|.........+..
T Consensus 211 p~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~ 286 (386)
T 3v65_B 211 PM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQ 286 (386)
T ss_dssp TT-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECS
T ss_pred cC-CCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEEC
Confidence 43 34455555555 78888888765554444444445788999998888887642 355799999765443333332
Q ss_pred cccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeC
Q 001386 574 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1088)
Q Consensus 574 ~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1088)
.. .....+++ ..+..+++-...+.|..++..+|+....+..
T Consensus 287 ~~---~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 287 GL---PHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp SC---SSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CC---CCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 22 45677777 3444555556778888888777777777654
No 276
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.38 E-value=1.9e-05 Score=94.61 Aligned_cols=278 Identities=10% Similarity=0.031 Sum_probs=154.9
Q ss_pred eeeecC-CCCeEEEEEcccC-----------cEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECC
Q 001386 339 SMDFHP-VQHTLLLVGTNVG-----------DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1088)
Q Consensus 339 ~v~~sp-dg~~lla~g~~dg-----------~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~ 406 (1088)
++++.| +|+ +++.|+.+. .+.+||..+++-..... ....+.....++++..
T Consensus 190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~----------------~~~~~~~~~~~~~~~~ 252 (656)
T 1k3i_A 190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV----------------TVTKHDMFCPGISMDG 252 (656)
T ss_dssp EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE----------------EECSCCCSSCEEEECT
T ss_pred eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc----------------cCCCCCCccccccCCC
Confidence 567777 777 677776432 57889988876432111 0122333444678889
Q ss_pred CCCEEEEEeC-CCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEe-CC-----CcEEEEeCCCCceeE
Q 001386 407 DGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DD-----KTIKVWDAVTGSRTY 479 (1088)
Q Consensus 407 dg~~las~~~-dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s-~d-----~~i~vwd~~~~~~~~ 479 (1088)
+|+.+++|+. +..+.+||..+++-.. ...+.... .-.+++..++++ +++.|+ .+ ..+.+||..+++-..
T Consensus 253 ~g~lyv~GG~~~~~v~~yd~~t~~W~~-~~~~~~~R-~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W~~ 328 (656)
T 1k3i_A 253 NGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVAR-GYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWTS 328 (656)
T ss_dssp TSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSSCC-SSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred CCCEEEeCCCCCCceEEecCcCCceeE-CCCCCccc-cccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCccee
Confidence 9999999984 4579999998764221 11111111 112455667888 677777 44 569999998876432
Q ss_pred EeccCC-ccEE----EEeeeeeCCceEEEEEecCC---------eEEEEECCCCCceEEecCC---------CCceEEEE
Q 001386 480 SFEGHG-APVY----SLCPHAKENIHFIFSISVDG---------KIKAWLYDSLGARVDYDAP---------GLGCTRMA 536 (1088)
Q Consensus 480 ~~~~~~-~~v~----~~~~~~~~~~~~l~s~~~dg---------~i~iwd~~~~~~~~~~~~~---------~~~v~~~~ 536 (1088)
. .... .+.. ...+ ..++..++.++.+| .+..||..+..-....... ...-.++.
T Consensus 329 ~-~~~~~~p~~~~~~~~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 329 L-PNAKVNPMLTADKQGLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp E-TTSCSGGGCCCCTTGGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred C-CCcccccccccccccee--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 2 1000 0000 0001 12334455555444 4677887765533221111 11223444
Q ss_pred Ecc-CCCEEEEEeeCCCC----c---eeEEEEeCCCCceeEEE--eccccccccEEEEEEeCCCCEEEEEeCC-------
Q 001386 537 YSA-NGRRLFSCGTSKEG----E---SFLVEWNESEGAIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDD------- 599 (1088)
Q Consensus 537 ~s~-~g~~l~~~~~~~~~----~---~~i~iwd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~s~d------- 599 (1088)
|.. +++.+++|+.+... . ..+.+||..+....... .... .....+++..|+++.++.|+.+
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~--~R~~~~~~~l~~g~i~v~GG~~~~~~~~~ 483 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF--ARTFHTSVVLPDGSTFITGGQRRGIPFED 483 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS--CCBSCEEEECTTSCEEEECCBSBCCTTCC
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCC--CcccCCeEECCCCCEEEECCcccCcCcCC
Confidence 543 67777776642210 1 15888998877655443 1111 1223445667899999998754
Q ss_pred ----CcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeC
Q 001386 600 ----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1088)
Q Consensus 600 ----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1088)
..+.+||..+.+....-..........+..+.|++++++.|+.
T Consensus 484 ~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 484 STPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999987665432211111112234556789999999885
No 277
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.35 E-value=6.9e-05 Score=89.74 Aligned_cols=118 Identities=11% Similarity=0.163 Sum_probs=75.2
Q ss_pred EEEEcc-CCCEEEEEeeCCCC-------ceeEEEEeCCCCceeE--EEeccccccccEEEEEEeCCCCEEEEEe-CCCcE
Q 001386 534 RMAYSA-NGRRLFSCGTSKEG-------ESFLVEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVI 602 (1088)
Q Consensus 534 ~~~~s~-~g~~l~~~~~~~~~-------~~~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i 602 (1088)
.+++.+ +++.++.++.+.+. ...+.+||+.+++... .+.... .....++++..++..++.|+ .+..+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~--~~~~~~~~~~~~g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH--DMFCPGISMDGNGQIVVTGGNDAKKT 267 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSC--CCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCC--CCccccccCCCCCCEEEeCCCCCCce
Confidence 456677 88888887754321 2368999998876432 222211 12334567778999988887 45689
Q ss_pred EEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEe-CC-----CcEEEEeCCCC
Q 001386 603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NE-----NRIKILETPES 654 (1088)
Q Consensus 603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~d-----g~i~iwd~~~~ 654 (1088)
.+||..+.+....-...... .-.+++..+++++++.|+ .+ ..+.+||..++
T Consensus 268 ~~yd~~t~~W~~~~~~~~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 268 SLYDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp EEEEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred EEecCcCCceeECCCCCccc-cccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 99999887655432222211 123566677999999988 34 45777877654
No 278
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.33 E-value=0.00021 Score=72.35 Aligned_cols=207 Identities=8% Similarity=0.011 Sum_probs=134.0
Q ss_pred eecccCCCCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCC
Q 001386 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1088)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~d 407 (1088)
+.|.|-.+++..++|+|++..|.++...++.|...|.. |+.++..+ +.+ ......|++.++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~ 80 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGD 80 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECST
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCC
Confidence 45667767999999999888788888889999999998 77665422 222 256888999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceeEec------cCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCC---CCcee
Q 001386 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEID------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRT 478 (1088)
Q Consensus 408 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~------~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~---~~~~~ 478 (1088)
+.++++.-.++.+.++++.....+....... ........++|.|+++. |+++.......+|.+. .+..+
T Consensus 81 g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~--L~va~E~~p~~i~~~~g~~~~~~l 158 (255)
T 3qqz_A 81 NQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT--FWFFKEKNPIEVYKVNGLLSSNEL 158 (255)
T ss_dssp TEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE--EEEEEESSSEEEEEEESTTCSSCC
T ss_pred CEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE--EEEEECcCCceEEEEcccccCCce
Confidence 9877776677889999987655322111111 23445689999999985 3334433334444432 12222
Q ss_pred EEec-------cCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCC---------CceEEEEEccCCC
Q 001386 479 YSFE-------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------LGCTRMAYSANGR 542 (1088)
Q Consensus 479 ~~~~-------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~s~~g~ 542 (1088)
..+. .+...+.+++++|. .+++++.....+.+.++|.+.. .+..+.... .....|+|.++|+
T Consensus 159 ~i~~~~~~~~~~~~~d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ 236 (255)
T 3qqz_A 159 HISKDKALQRQFTLDDVSGAEFNQQ-KNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN 236 (255)
T ss_dssp EEEECHHHHHTCCSSCCCEEEEETT-TTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred eeecchhhccccccCCceeEEEcCC-CCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCC
Confidence 2221 12345678888875 5678888888899999987644 333333221 2567899999998
Q ss_pred EEEEEeeCCCCceeEEEEeC
Q 001386 543 RLFSCGTSKEGESFLVEWNE 562 (1088)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~ 562 (1088)
..++ +. .+.++.+..
T Consensus 237 lyIv-sE----~n~~y~f~~ 251 (255)
T 3qqz_A 237 IYIV-SE----PNRFYRFTP 251 (255)
T ss_dssp EEEE-ET----TTEEEEEEC
T ss_pred EEEE-cC----CceEEEEEe
Confidence 5555 32 234666543
No 279
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.31 E-value=0.0012 Score=71.61 Aligned_cols=249 Identities=11% Similarity=-0.028 Sum_probs=153.1
Q ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc
Q 001386 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1088)
Q Consensus 397 ~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~ 476 (1088)
...+|.+..+++ +|+.+. ...|+..++.+.... .+......+..++|.+.+.. ++++-...+.|..+++..+.
T Consensus 34 d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~----~~~~~~~~~~~l~~d~~~~~-ly~~D~~~~~I~r~~~~g~~ 106 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYT----LLLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSN 106 (349)
T ss_dssp TSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEE----EEECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCS
T ss_pred CCCcccccccCc-eeEeec-ccceEEEeCCCCeeE----EeecCCCceEEEEEeccccE-EEEEeccCCceEEEecCCCC
Confidence 345566666643 444443 344888887765322 12223345789999987664 45555567889999987765
Q ss_pred eeEEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCcee
Q 001386 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1088)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 556 (1088)
....+.........+++.+. ++.+.++-...+.|.+.+++.................++++|.+..|+...... ...
T Consensus 107 ~~~~~~~~~~~p~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~--~~~ 183 (349)
T 3v64_C 107 VEEVVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN--TPR 183 (349)
T ss_dssp CEEEECSSCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS--SCE
T ss_pred ceEEEeCCCCCccEEEEecC-CCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCC--CCE
Confidence 44433322234456676432 445666767778999999886655544444445678999999877777664321 266
Q ss_pred EEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCC
Q 001386 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 635 (1088)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 635 (1088)
|...+...... ..+.... ....+.++++|++..|+.+. ..+.|..+++........+... ......+++ .++.
T Consensus 184 I~r~~~dG~~~-~~~~~~~--~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~giav-~~~~ 257 (349)
T 3v64_C 184 IEASSMDGSGR-RIIADTH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDS 257 (349)
T ss_dssp EEEEETTSCSC-EESCCSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEE-ETTE
T ss_pred EEEEeCCCCCc-EEEEECC--CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC--CCCceEEEE-ECCE
Confidence 88888764332 2322111 24678999998777776654 5678999998654333333222 223467777 4555
Q ss_pred EEEEEeCCCcEEEEeCCCCCcccccc
Q 001386 636 LLAVIANENRIKILETPESNSVDAAG 661 (1088)
Q Consensus 636 ~l~~~~~dg~i~iwd~~~~~~~~~~~ 661 (1088)
++++-...+.|..++..+++....+.
T Consensus 258 ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 258 LYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEecCCCCeEEEEEccCCCccEEec
Confidence 66666667888888866665554443
No 280
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.31 E-value=0.00062 Score=68.97 Aligned_cols=218 Identities=14% Similarity=0.138 Sum_probs=134.6
Q ss_pred EecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecc-ccCCeeEEEECCCCCEEEEEeCCCcEEEEEcC
Q 001386 834 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 912 (1088)
Q Consensus 834 ~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~-h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~ 912 (1088)
.+.+-...+..+++.|+++.++++...++.|...|.. ++.+..+.- -......|++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4555556899999999666677778889999999998 887777642 22457889999999887776677889999987
Q ss_pred CCce-eeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeC-CeEEEEEcC---cceeeeeee------cCCCcCEEEEE
Q 001386 913 GWGI-QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE-THLAIYEAE---ELTCLKQWF------PISSVPISQAT 981 (1088)
Q Consensus 913 ~~~~-~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d-~~i~vwd~~---~~~~~~~~~------~~h~~~v~~l~ 981 (1088)
.... .........-+..........++++|+++.|.++.+ ....+|.+. ....+.... ..+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 6542 111222211111122245789999999977777533 233444443 111111110 11244678899
Q ss_pred EeeCCCE-EEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeC
Q 001386 982 FSCDCRM-VFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1056 (1088)
Q Consensus 982 fs~dg~~-l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l 1056 (1088)
+.|.... ++.......+.++|.. |+.+..+........- ....-.+-.|+|+| +|+++++ +.-+.+++++-
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l-~~~~~qpEGia~d~-~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGL-SHNIKQAEGVAMDA-SGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGC-SSCCCSEEEEEECT-TCCEEEE-ETTTEEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCc-ccccCCCCeeEECC-CCCEEEE-cCCceEEEEEe
Confidence 9996544 5555566788889966 5566555433211000 00112346799999 7886555 67776666643
No 281
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.30 E-value=0.0016 Score=69.61 Aligned_cols=238 Identities=10% Similarity=-0.038 Sum_probs=144.2
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC---CceeE-EeccCC
Q 001386 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GSRTY-SFEGHG 485 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~---~~~~~-~~~~~~ 485 (1088)
+|+.+.. ..|+..|+.+++... .+ .....+..++|.+++.. ++++-...+.|..+|+.. +.... .+...-
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~---~~-~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTS---LI-PNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEE---EE-CSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECC-CeEEEEECCCcceEe---hh-cCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 3444433 448888998765332 22 23456789999987764 455556678999999876 22222 232222
Q ss_pred ccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001386 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1088)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1088)
.....+++.+. ++.+.++-...+.|.+.+++.................++++|.+..|+.+... ..+.|...++..
T Consensus 77 ~~p~glavd~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~--~~~~I~~~~~dG- 152 (316)
T 1ijq_A 77 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNG- 152 (316)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTS-
T ss_pred CCcCEEEEeec-CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC--CCCeEEEEcCCC-
Confidence 34466776432 44566666778899999987655444444344567899999977777665431 125688888753
Q ss_pred ceeEEEeccccccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCC
Q 001386 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1088)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1088)
.....+.... -...+.+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+
T Consensus 153 ~~~~~~~~~~--~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~ 229 (316)
T 1ijq_A 153 VDIYSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 229 (316)
T ss_dssp CCEEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred CCeEEEEECC--CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence 3333332211 25678999999877776655 5678999998753332222222222234577775 455666666678
Q ss_pred cEEEEeCCCCCccccc
Q 001386 645 RIKILETPESNSVDAA 660 (1088)
Q Consensus 645 ~i~iwd~~~~~~~~~~ 660 (1088)
.|..++..+++....+
T Consensus 230 ~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 230 AIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEEEETTTCCCCEEE
T ss_pred eEEEEeCCCCcceEEE
Confidence 8988887766554443
No 282
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.30 E-value=0.00089 Score=73.87 Aligned_cols=247 Identities=11% Similarity=-0.036 Sum_probs=153.0
Q ss_pred eEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001386 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1088)
Q Consensus 399 V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~ 478 (1088)
-.|.+..+ ..+|+.+. ...|+..++.++.... +......+..++|.+.+.. ++++-...+.|..+++..+...
T Consensus 79 ~~C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~~----~~~~~~~~~gl~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~~ 151 (386)
T 3v65_B 79 RSCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTL----LLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNVE 151 (386)
T ss_dssp SCEEECSS-CCEEEEEC-BSCEEEECTTSCCCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCCEE
T ss_pred CeECCccc-cceeEeec-CccceeeccCCCcEEE----EecCCCccEEEEEecCCCe-EEEEeCCCCcEEEEecCCCCcE
Confidence 34555555 33454443 3458888887654322 2233346889999987664 4555566788999998766544
Q ss_pred EEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEE
Q 001386 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1088)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~ 558 (1088)
..+.........+++.+. ++.+.++-...+.|.+.+++.................++++|.+..|+..... ....|+
T Consensus 152 ~~~~~~~~~p~glavd~~-~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~--~~~~I~ 228 (386)
T 3v65_B 152 EVVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG--NTPRIE 228 (386)
T ss_dssp EEECSSCSCCCCEEEETT-TTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECS--SSCEEE
T ss_pred EEEeCCCCCccEEEEEeC-CCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccC--CCCEEE
Confidence 333322233455666432 44566666777889998887655544444444567889999988877766432 136788
Q ss_pred EEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEE
Q 001386 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 637 (1088)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 637 (1088)
.++.............. ...+.++++|++..|+.+. ..+.|..+++........+... ......+++ .++.++
T Consensus 229 r~~~dG~~~~~~~~~~~---~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~giav-~~~~ly 302 (386)
T 3v65_B 229 ASSMDGSGRRIIADTHL---FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLY 302 (386)
T ss_dssp EEETTSCSCEEEECSSC---SCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS--CSSEEEEEE-ETTEEE
T ss_pred EEeCCCCCcEEEEECCC---CCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC--CCCceEEEE-ECCEEE
Confidence 88876543333332222 4578999998777776654 5678999998654333333322 223467777 445566
Q ss_pred EEEeCCCcEEEEeCCCCCcccccc
Q 001386 638 AVIANENRIKILETPESNSVDAAG 661 (1088)
Q Consensus 638 ~~~~~dg~i~iwd~~~~~~~~~~~ 661 (1088)
++-...+.|..++..+++....+.
T Consensus 303 ~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 303 WTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEETTTTEEEEEETTTCCSCEEEE
T ss_pred EeeCCCCeEEEEECCCCcceEEEc
Confidence 666677888888866666555444
No 283
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.25 E-value=0.002 Score=68.78 Aligned_cols=232 Identities=9% Similarity=-0.062 Sum_probs=139.6
Q ss_pred CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE-eCCCEEEEEEccCC---Cccc
Q 001386 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGG---SDAR 432 (1088)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~-~~dg~i~vwd~~~~---~~~~ 432 (1088)
..|+..|+.+++.... . .....+..++|++++..|..+ ..++.|..+++.+. ....
T Consensus 10 ~~I~~i~~~~~~~~~~-------------------~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~ 69 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSL-------------------I-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD 69 (316)
T ss_dssp SSEEEEETTSCCCEEE-------------------E-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE
T ss_pred CeEEEEECCCcceEeh-------------------h-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE
Confidence 6788889887654321 1 134568899999876655554 45688999998862 2111
Q ss_pred ceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecC-CeE
Q 001386 433 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GKI 511 (1088)
Q Consensus 433 ~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~i 511 (1088)
. .+...-.....+++.+.+.. +.++-...+.|.+.|+........+.........+++.+. ++.++++.... +.|
T Consensus 70 ~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~-~g~ly~~d~~~~~~I 145 (316)
T 1ijq_A 70 T--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKI 145 (316)
T ss_dssp E--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEE
T ss_pred E--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC-CCEEEEEccCCCCeE
Confidence 1 12222235678999876654 4555566789999997654433333333345678887543 34444444333 688
Q ss_pred EEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCC
Q 001386 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 591 (1088)
Q Consensus 512 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 591 (1088)
...+++...........-.....+++++++..|+.+-. ....|..+|...... +.+............+++. .+.
T Consensus 146 ~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~---~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~-~~~ 220 (316)
T 1ijq_A 146 KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDK 220 (316)
T ss_dssp EEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE-TTE
T ss_pred EEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEEC---CCCeEEEEecCCCce-EEEeecCCccCCcEEEEEE-CCE
Confidence 88888654443333333456788999999888887653 245799999874333 3332111011345677774 344
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeEEEe
Q 001386 592 QILAAGDDHVIKIWDMNKVQLLTTID 617 (1088)
Q Consensus 592 ~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1088)
.+++-...+.|..++..+|+.+..+.
T Consensus 221 ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 221 VFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEEECCCCeEEEEeCCCCcceEEEe
Confidence 55555567788888887776665554
No 284
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.25 E-value=0.00025 Score=79.44 Aligned_cols=247 Identities=12% Similarity=0.045 Sum_probs=144.4
Q ss_pred CCeeEEEEec-CCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeC-CC----eEEEEEcCC
Q 001386 799 EAVPCFALSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD-DS----TILIYNARS 871 (1088)
Q Consensus 799 ~~v~~~~~s~-dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~-dg----~i~lwd~~~ 871 (1088)
.....++++| ++..|.++. .+.|+.+|+.++.... +.........++|++ ++++|+++.. ++ .+.+++. .
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~ 213 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-E 213 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-G
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-C
Confidence 3467899998 455566665 4789999998766443 333556788999999 7775555544 22 3444443 3
Q ss_pred ceee--eeeccccCCeeEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEE
Q 001386 872 SEVI--SKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 948 (1088)
Q Consensus 872 ~~~~--~~l~~h~~~V~~l~~s~-dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~ 948 (1088)
+... ..+.. ......++++| +|.++++-..++.|..++.+++.... ....... .....++|+|+|++|.
T Consensus 214 g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~-----~~P~gia~~pdG~~ly 285 (430)
T 3tc9_A 214 SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDS-----GWEFHIQFHPSGNYAY 285 (430)
T ss_dssp GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSS-----SCCEEEEECTTSSEEE
T ss_pred Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCC-----CcceeEEEcCCCCEEE
Confidence 3222 22222 23457789999 77777766677889999998754321 1121111 1357899999999666
Q ss_pred EE--eCCeEEEEEcCc--cee--eeeeec-----C---------CCcCEE-EEEEe--------eCCCEEEEEeCCCcEE
Q 001386 949 LV--HETHLAIYEAEE--LTC--LKQWFP-----I---------SSVPIS-QATFS--------CDCRMVFTSFVDGTLS 999 (1088)
Q Consensus 949 ~~--~d~~i~vwd~~~--~~~--~~~~~~-----~---------h~~~v~-~l~fs--------~dg~~l~s~s~dg~v~ 999 (1088)
++ ..+.|..++... ++. +..+.. + .-.... .++.. ++|.+.++=...+.|+
T Consensus 286 v~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~ 365 (430)
T 3tc9_A 286 IVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIR 365 (430)
T ss_dssp EEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEE
T ss_pred EEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEE
Confidence 54 557899887653 222 111110 0 011233 45553 3355555555678899
Q ss_pred EEEcCCCceEEEecccc-ccCC------CCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001386 1000 IHEASNLEVQCRILSTA-YLRP------TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1057 (1088)
Q Consensus 1000 vwd~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~ 1057 (1088)
.++ .+|.......... .... .....=.+|..++++|+++.++++=...+.|+.+++.
T Consensus 366 ~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 366 ILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 988 5675544332110 0000 0000112578899999556666666667788888764
No 285
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.24 E-value=0.025 Score=68.87 Aligned_cols=530 Identities=11% Similarity=0.033 Sum_probs=274.2
Q ss_pred CCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~ 414 (1088)
..|.++....+|.. -.|+.+ -+..||..+++.... .......|.++.. .+| .|..+
T Consensus 63 ~~i~~i~~d~~g~l--WigT~~-Gl~~yd~~~~~f~~~-------------------~~~~~~~i~~i~~-~~g-~lWig 118 (758)
T 3ott_A 63 TRIYCGVIIDNTYL--YMGTDN-GILVYNYRADRYEQP-------------------ETDFPTDVRTMAL-QGD-TLWLG 118 (758)
T ss_dssp SCEEEEEEETTTEE--EEEETT-EEEEEETTTTEECCC-------------------SCCCCSCEEEEEE-ETT-EEEEE
T ss_pred ceEEEEEEcCCCcE--EEEeCC-CeEEEeCCCCEEECc-------------------ccCCCceEEEEEe-cCC-cEEEE
Confidence 36888888888863 334444 478899877532110 0112245777765 344 56666
Q ss_pred eCCCEEEEEEccCCCcccceeEe-c-cCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe-ccC----Ccc
Q 001386 415 YSKHIVQLYAYHGGSDARQQLEI-D-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGH----GAP 487 (1088)
Q Consensus 415 ~~dg~i~vwd~~~~~~~~~~~~~-~-~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~-~~~----~~~ 487 (1088)
+.+ -+..+|..+++... .... . .....|.++....+|. +..++.. -+..+|..+++..... ... ...
T Consensus 119 t~~-Gl~~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~---lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (758)
T 3ott_A 119 ALN-GLYTYQLQSRKLTS-FDTRRNGLPNNTIYSIIRTKDNQ---IYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLF 192 (758)
T ss_dssp ETT-EEEEEETTTCCEEE-ECHHHHCCSCSCEEEEEECTTCC---EEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCC
T ss_pred cCC-cceeEeCCCCeEEE-eccCCCCcCCCeEEEEEEcCCCC---EEEEeCC-CHhhCccCCCceEEecCCCccccccce
Confidence 666 48889987754221 1000 0 1234688888888887 3334444 4778887776543211 111 123
Q ss_pred EEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCce
Q 001386 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1088)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1088)
|.++.. +.++..|..|+. +-+..+|..+.............|.++....+|...+.. .. -+.+++..++..
T Consensus 193 i~~i~~--d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-----Gl~~~~~~~~~~ 263 (758)
T 3ott_A 193 VNSLLE--DTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-DN-----GLYVYHNDTTPL 263 (758)
T ss_dssp EEEEEE--ETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-TT-----EEEEECCTTSCC
T ss_pred eEEEEE--ECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-CC-----ceeEEecCCCcE
Confidence 676655 434444444553 457778876544322211223457888888888776654 21 278888877654
Q ss_pred eEEEec----cccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeC-----CCCCCCCceEEEecCCCEEE
Q 001386 568 KRTYQG----LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----GGGLPENPRICFNKNGTLLA 638 (1088)
Q Consensus 568 ~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----~~~~~~v~~v~~s~~~~~l~ 638 (1088)
...... .......|.++....+|.. -.|+..| +.++.... ....+.. ......|.++.-..+|.+.+
T Consensus 264 ~~~~~~~~~~~~l~~~~i~~i~~D~~g~l-WiGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi 339 (758)
T 3ott_A 264 QHIIHDSRNIQSLTNNIIWNIFADQEHNI-WLGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKGFYWF 339 (758)
T ss_dssp EEECCCTTCTTSCSCSCEEEEEECTTCCE-EEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE
T ss_pred EEEEcCCCCcCcCCcCeEEEEEEcCCCCE-EEEeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCCCEEE
Confidence 332211 0112346888887777654 4455556 54443321 1111110 01112466777777776554
Q ss_pred EEeCCCcEEEEeCCCCCcccccccccCcceeeeecCCCcceeccccCCceeecCCCCCCCCcccccccCccceecccccc
Q 001386 639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 718 (1088)
Q Consensus 639 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 718 (1088)
|+.+| +..++..++.... + ..+....
T Consensus 340 -Gt~~G-l~~~~~~~~~~~~-~--------------------------------------------------~~~~~~~- 365 (758)
T 3ott_A 340 -GGANG-LIRFTDPAGERHD-A--------------------------------------------------IWYRMGD- 365 (758)
T ss_dssp -EETTE-EEEESCTTSSCCC-C--------------------------------------------------EEECTTC-
T ss_pred -eeCCc-ceeecccccccce-e--------------------------------------------------EEeccCC-
Confidence 44544 5555544321100 0 0000000
Q ss_pred CCCcceeeecCCccccccEEEEEEecCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCC
Q 001386 719 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQ 798 (1088)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1088)
. +.......|.++.-..+|...+. +. +-+..|+...... ..+. ..........
T Consensus 366 -~--------~~~l~~~~v~~i~~d~~g~lWig-t~-~GL~~~~~~~~~~--------~~~~--------~~~~~~~~~~ 418 (758)
T 3ott_A 366 -K--------TYPLSHNRIRHIYEDKEQQLWIA-TD-GSINRYDYATRQF--------IHYN--------IVDNTGTYNT 418 (758)
T ss_dssp -S--------SSCCSCSCEEEEEECTTSCEEEE-ET-TEEEEEETTTTEE--------EEEE--------EECCC--CBS
T ss_pred -c--------CCCCCCCceEEEEECCCCCEEEE-eC-CcHhhcCcCCCcE--------EEee--------cCCCcCCCCC
Confidence 0 00002245677777777774443 33 4566666432211 0000 0000000023
Q ss_pred CCeeEEEEecCCCEEEEEeCCcEEEEEcCCc-----eeE---EEec---C-CCCCeEEEEEcCCCCcEEEEEeCCCeEEE
Q 001386 799 EAVPCFALSKNDAYLFSASGGVISLYIVMTF-----KTI---LTIM---P-PSPTATSLAFNPHDNNVIAIGMDDSTILI 866 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~-----~~~---~~~~---~-~~~~i~~l~~sp~d~~~lasg~~dg~i~l 866 (1088)
..|.++...++|.+.+....+-+.++|..+. ... ..+. + ....|.++...+ ++.+.+.++..+-+..
T Consensus 419 ~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~ 497 (758)
T 3ott_A 419 NWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDK 497 (758)
T ss_dssp SSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCEEEEETTCSSEEE
T ss_pred ceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC-CCCEEEEccCCCCcEE
Confidence 4688888888887666555667888886531 111 1111 1 224588999988 6776653333455888
Q ss_pred EEcCCceeeeeecc---ccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCC
Q 001386 867 YNARSSEVISKLEG---HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 943 (1088)
Q Consensus 867 wd~~~~~~~~~l~~---h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d 943 (1088)
+|..+++....... ....+.++....+|.+.+. +..| +..++..++.... +. ..+.. ...|.++... +
T Consensus 498 ~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~---~~-~~gl~--~~~i~~i~~~-~ 568 (758)
T 3ott_A 498 INPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQQS---IS-FGSFS--NNEILSMTCV-K 568 (758)
T ss_dssp EETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCCCB---CC-CCC-----CCEEEEEEE-T
T ss_pred EeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCceEE---ec-ccCCC--ccceEEEEEC-C
Confidence 99887765432211 1346788888888888764 4555 7888876644221 11 11111 1357777764 6
Q ss_pred CCEEEEEeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEe-eCCCEEEEEeCCCcEEEEEc
Q 001386 944 QTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFVDGTLSIHEA 1003 (1088)
Q Consensus 944 g~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~s~s~dg~v~vwd~ 1003 (1088)
|++.+++ ++.+..+|..+.+...--.. ...+....+. +||. |..|+.+|-+. ++.
T Consensus 569 g~lWi~t-~~Gl~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~G~-l~fG~~~Gl~~-f~p 624 (758)
T 3ott_A 569 NSIWVST-TNGLWIIDRKTMDARQQNMT--NKRFTSLLFDPKEDC-VYLGGADGFGI-SHS 624 (758)
T ss_dssp TEEEEEE-SSCEEEEETTTCCEEEC--C--CCCCSEEEEETTTTE-EEEECBSEEEE-EEC
T ss_pred CCEEEEC-CCCeEEEcCCCceeEEecCC--CCceeeeEEECCCCc-EEEecCCceEE-ECh
Confidence 6655555 55688889887664321111 1223334443 4555 55577777544 443
No 286
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.23 E-value=0.00018 Score=87.31 Aligned_cols=200 Identities=6% Similarity=-0.035 Sum_probs=114.0
Q ss_pred CCCC-CeEEEEEC-CCCCEEEEEeCC-----CEEEEEEccCC-CcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCC-
Q 001386 394 DPGV-SVNRVVWS-PDGSLLGVAYSK-----HIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD- 464 (1088)
Q Consensus 394 ~h~~-~V~~l~~s-~dg~~las~~~d-----g~i~vwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d- 464 (1088)
+|.- .+...+|| |||++||.+... ..|+++|+.+| +.+.. .+.. ....++|+|||+. |+....|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~---~~~~~~WspDg~~--l~y~~~d~ 242 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSG---TNGEIVWGPDHTS--LFYVTKDE 242 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEE---ECSCCEECSSTTE--EEEEEECT
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccC---ceeeEEEecCCCE--EEEEEECC
Confidence 4553 78899999 999999976432 25999999998 63321 1211 1346899999985 3333333
Q ss_pred ----CcEEEEeCCCCcee--EEecc-CCccEEEEeeeeeCCceEEEEEec---CCeEEEEECCCCC--c--eEEecCCCC
Q 001386 465 ----KTIKVWDAVTGSRT--YSFEG-HGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLG--A--RVDYDAPGL 530 (1088)
Q Consensus 465 ----~~i~vwd~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~--~--~~~~~~~~~ 530 (1088)
..|.++++.++... ..+.. .......+.+ ++||++|+..+. ...|.++|+.+.. . .........
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~ 320 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYK--AADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG 320 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEE--CTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT
T ss_pred CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEE--CCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC
Confidence 36888898877532 23322 2233445555 667877776653 3458888887753 2 222222333
Q ss_pred ceEEEEEccCCCEEEEEeeCC-CCceeEEEEeCCCC-ceeE-EEeccccccccEEEEEEeCCCCEE-EEEeCCCc--EEE
Q 001386 531 GCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEG-AIKR-TYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHV--IKI 604 (1088)
Q Consensus 531 ~v~~~~~s~~g~~l~~~~~~~-~~~~~i~iwd~~~~-~~~~-~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~--i~i 604 (1088)
...++.|+ +|..|+..+... .+...|+.++..++ .... .+.... ...+..+.+. ++.+ ++...++. |.+
T Consensus 321 ~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~--~~~l~~~~~~--~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 321 VRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSE--DVFMESIAVR--SNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp CCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCS--SEEEEEEEEC--SSEEEEEEEETTEEEEEE
T ss_pred ceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCC--CcEEEEEEEE--CCEEEEEEEeCCEEEEEE
Confidence 44444443 366666655432 34567888888753 2222 222211 1234445444 4454 45666775 445
Q ss_pred EEc
Q 001386 605 WDM 607 (1088)
Q Consensus 605 wd~ 607 (1088)
+++
T Consensus 396 ~dl 398 (751)
T 2xe4_A 396 MMA 398 (751)
T ss_dssp EEC
T ss_pred Eec
Confidence 564
No 287
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.21 E-value=0.0029 Score=70.07 Aligned_cols=239 Identities=10% Similarity=-0.022 Sum_probs=150.2
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC----ceeEEeccCC
Q 001386 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG 485 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~----~~~~~~~~~~ 485 (1088)
+|+.+ ....|+..++.+..... +......+..++|.+.+.. ++++-...+.|+.+++... .....+....
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~----~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEe-ccceeEEEccCCcceeE----eccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 44444 34678888888764322 2334567889999987664 4455556788999998652 2233333334
Q ss_pred ccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001386 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1088)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1088)
.....+++.+. ++.+.++-...+.|.+.+++.......+.........+++.|.+..|+..... ....|...++...
T Consensus 159 ~~p~glavD~~-~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~--~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 159 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 235 (400)
T ss_dssp SCEEEEEEETT-TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS--SSCCEEEEETTSC
T ss_pred CCcccEEEEec-CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC--CCCEEEEEeCCCC
Confidence 55677777542 44566666778899999988766555555445567899999987777765421 1356888887654
Q ss_pred ceeEEEeccccccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCC
Q 001386 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1088)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1088)
.........- ...+.+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+
T Consensus 236 ~~~~~~~~~l---~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~ 311 (400)
T 3p5b_L 236 DIYSLVTENI---QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 311 (400)
T ss_dssp SCEEEECSSC---SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSC
T ss_pred ccEEEEECCC---CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCC
Confidence 4333333222 4678999998888777764 5678999998755443333332222233466663 345556666678
Q ss_pred cEEEEeCCCCCcccccc
Q 001386 645 RIKILETPESNSVDAAG 661 (1088)
Q Consensus 645 ~i~iwd~~~~~~~~~~~ 661 (1088)
.|..++..+++....+.
T Consensus 312 ~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 312 AIFSANRLTGSDVNLLA 328 (400)
T ss_dssp SEEEEESSSCCCCEEEE
T ss_pred eEEEEEcCCCCceEEEe
Confidence 88888877776655544
No 288
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.19 E-value=0.00037 Score=78.05 Aligned_cols=248 Identities=11% Similarity=0.030 Sum_probs=146.3
Q ss_pred CeeEEEEecC--CCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCC---C-eEEEEEcCCc
Q 001386 800 AVPCFALSKN--DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD---S-TILIYNARSS 872 (1088)
Q Consensus 800 ~v~~~~~s~d--g~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d---g-~i~lwd~~~~ 872 (1088)
....++++|+ +..|.++. .+.|+.+|..+++.... .........+++++ +++++++.... . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 4568999984 44555554 48899999987765544 44556789999999 77755444321 1 2333333222
Q ss_pred ee-eeeeccccCCeeEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE
Q 001386 873 EV-ISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 950 (1088)
Q Consensus 873 ~~-~~~l~~h~~~V~~l~~s~-dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~ 950 (1088)
.. ...+. .-.....++++| +|.+.++-..++.|+.+|..++.... ........ .....++|+|+|++|.++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~-~~~~~~~~-----~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE-EEVMMDTK-----GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE-EEEECSCC-----SSCEEEEECTTSSEEEEE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE-EEeccCCC-----CCcccEEEeCCCCEEEEE
Confidence 11 01121 233456789999 67766666677889999988655311 11111111 123579999999966654
Q ss_pred --eCCeEEEEEcC--cceee--eeeec--C------------CCcCEEEEEE---------eeCCCEEEEEeCCCcEEEE
Q 001386 951 --HETHLAIYEAE--ELTCL--KQWFP--I------------SSVPISQATF---------SCDCRMVFTSFVDGTLSIH 1001 (1088)
Q Consensus 951 --~d~~i~vwd~~--~~~~~--~~~~~--~------------h~~~v~~l~f---------s~dg~~l~s~s~dg~v~vw 1001 (1088)
..+.|+.++.. ++... ..+.. + .-.....+++ .++|.+.++-...+.|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 45689998765 33211 11110 0 1234677999 6677777766677889999
Q ss_pred EcCCCceEEEeccccccCCC-Cc------cccccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001386 1002 EASNLEVQCRILSTAYLRPT-TS------CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1057 (1088)
Q Consensus 1002 d~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~ 1057 (1088)
+. +|..............+ .. ..=-+|..++++|.++.++++=...+.|+.+++.
T Consensus 371 ~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 84 66544333211100000 00 0113478899995477777776777899888774
No 289
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.13 E-value=0.0052 Score=65.99 Aligned_cols=282 Identities=11% Similarity=0.021 Sum_probs=147.9
Q ss_pred CCceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE
Q 001386 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1088)
Q Consensus 335 ~~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~ 414 (1088)
..+.+|.|.+++. ++++|. .|.| +...+.|+.=..... ........+.+++|++ +..++ +
T Consensus 36 ~~~~~v~~~~~~~-~~~~G~-~g~i-~~s~DgG~tW~~~~~---------------~~~~~~~~~~~i~~~~-~~~~~-~ 95 (327)
T 2xbg_A 36 ATILDMSFIDRHH-GWLVGV-NATL-METRDGGQTWEPRTL---------------VLDHSDYRFNSVSFQG-NEGWI-V 95 (327)
T ss_dssp SCEEEEEESSSSC-EEEEET-TTEE-EEESSTTSSCEECCC---------------CCSCCCCEEEEEEEET-TEEEE-E
T ss_pred CcEEEEEECCCCc-EEEEcC-CCeE-EEeCCCCCCCeECCC---------------CCCCCCccEEEEEecC-CeEEE-E
Confidence 3799999988887 566654 4544 333333431110000 0112345788999986 44444 4
Q ss_pred eCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE-EeccCCccEEEEee
Q 001386 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYSLCP 493 (1088)
Q Consensus 415 ~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~-~~~~~~~~v~~~~~ 493 (1088)
+..+.|.. ..+.|+..........+.+.+..+.+.+++. +++.+ .++.|.. ..+.|+.-. ........+..+.+
T Consensus 96 g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~ 170 (327)
T 2xbg_A 96 GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNR 170 (327)
T ss_dssp EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEE
T ss_pred ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEE
Confidence 55664433 4444544332211112345678888877776 45544 4665432 223343322 22345567788877
Q ss_pred eeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEec
Q 001386 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 573 (1088)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 573 (1088)
.+ ++.+++.+...+..+-+|-....-..........+..+++.++++.++++. .+.++..+...|+.-..+..
T Consensus 171 ~~--~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~~~~ 243 (327)
T 2xbg_A 171 SP--SGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGELLS 243 (327)
T ss_dssp CT--TSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECCCBC
T ss_pred cC--CCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEeccC
Confidence 44 556666554444444444211111111223345788899999988776542 33465553222332222221
Q ss_pred c-ccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEeCC-CCCCCCceEEEecCCCEEEEEeCCCcEEEEeC
Q 001386 574 L-QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1088)
Q Consensus 574 ~-~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1088)
. ......+..+.+.+++..++++ .+|.| .+..+.|+.-..+... .....+..+.|.+++. +++++.+|.|.-++-
T Consensus 244 ~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 244 PLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp TTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred CcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 1 0011357888898876655554 56766 4555556655555422 1123578899986554 556667887766653
No 290
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.04 E-value=0.0074 Score=66.74 Aligned_cols=250 Identities=8% Similarity=-0.057 Sum_probs=149.7
Q ss_pred eeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEE-eC
Q 001386 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YS 416 (1088)
Q Consensus 338 ~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~-~~ 416 (1088)
.|.+..+.. +++++. ...|+..++.+..... +......+..++|++.+..|..+ ..
T Consensus 76 ~C~~~~~~~-~ll~~~--~~~I~~i~l~~~~~~~--------------------~~~~~~~~~~l~~d~~~~~lywsD~~ 132 (400)
T 3p5b_L 76 ACKAVGSIA-YLFFTN--RHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLS 132 (400)
T ss_dssp SCCCSTTSC-EEEEEE--TTEEEEECTTSCSCEE--------------------EECSCSCEEEEEEETTTTEEEEEETT
T ss_pred ceeeccccc-eeEEec--cceeEEEccCCcceeE--------------------eccccCcceEEeeeeccCceEEEecC
Confidence 344443433 344443 2778888887664332 12244678899999866655554 45
Q ss_pred CCEEEEEEccCCCccc-ceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeee
Q 001386 417 KHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1088)
Q Consensus 417 dg~i~vwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 495 (1088)
.+.|+.+++.+..... ....+.........+++.+.+.. +.++-...+.|.+.|++.......+...-.....+++.+
T Consensus 133 ~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~-lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp 211 (400)
T 3p5b_L 133 QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP 211 (400)
T ss_dssp TTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEET
T ss_pred CCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCc-eEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEec
Confidence 6789999987632100 11122224456788999885554 455666678999999876554444443444567888855
Q ss_pred eCCceEEEEEec-CCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEecc
Q 001386 496 KENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1088)
Q Consensus 496 ~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1088)
. ++.++++-.. .+.|...+++...........-.....+++++++..|+.+-. +...|..+|.............
T Consensus 212 ~-~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~ 287 (400)
T 3p5b_L 212 V-HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDE 287 (400)
T ss_dssp T-TTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCCCEEEEECS
T ss_pred c-cCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEEC---CCCEEEEEeCCCCccEEEEeCC
Confidence 3 3444444433 478888888765555444444456788999999888887742 3557999998654443333321
Q ss_pred ccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeEEEe
Q 001386 575 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1088)
Q Consensus 575 ~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1088)
. .......+++. .+..+++-...+.|..+|..+|+.+..+.
T Consensus 288 ~-~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 288 K-RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp S-TTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred C-CCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 1 11344566663 33444555567788888877777666664
No 291
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.98 E-value=0.0086 Score=63.69 Aligned_cols=234 Identities=11% Similarity=-0.012 Sum_probs=142.4
Q ss_pred cCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEE-EEEeCCCEEEEEEccCCCcccce
Q 001386 356 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYHGGSDARQQ 434 (1088)
Q Consensus 356 dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l-as~~~dg~i~vwd~~~~~~~~~~ 434 (1088)
...|+..++.+........ .. ....+.+++|.+.+..| .+-...+.|..++..++.....
T Consensus 12 ~~~I~~i~l~~~~~~~~~~-----------------~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~- 72 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIV-----------------VG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN- 72 (318)
T ss_dssp EEEEEEEETTCTTSCCEEE-----------------EE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE-
T ss_pred cCeEEEEECCCCceEEEEE-----------------ec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE-
Confidence 3778999988764211110 11 12356789999855544 4545678899999987642221
Q ss_pred eEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEe-cCCeEEE
Q 001386 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKA 513 (1088)
Q Consensus 435 ~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~i 513 (1088)
.+...-.....+++.+.+.. ++++-...+.|.++++........+.........+++.+. ++.++.+-. ..+.|..
T Consensus 73 -~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~-~g~ly~td~~~~~~I~r 149 (318)
T 3sov_A 73 -VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPS-SGFMYWTDWGEVPKIER 149 (318)
T ss_dssp -EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGG-GTEEEEEECSSSCEEEE
T ss_pred -EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCC-CCEEEEEecCCCCEEEE
Confidence 12222245668899876654 4555566788999997654433333334455678888654 233444432 3578888
Q ss_pred EECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEE
Q 001386 514 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI 593 (1088)
Q Consensus 514 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 593 (1088)
.+++...........-.....+++++++..|+.+-. ....|..+|...........+.. .....+++.. +..+
T Consensus 150 ~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~---~~P~glav~~-~~ly 222 (318)
T 3sov_A 150 AGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSL---PHPFALTLFE-DILY 222 (318)
T ss_dssp EETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSCC---SCEEEEEEET-TEEE
T ss_pred EEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCceEEEecCCC---CCceEEEEeC-CEEE
Confidence 888755444333333445678999998888887642 35679999986443332333222 4566777753 3444
Q ss_pred EEEeCCCcEEEEEcCCCeeeEEEeC
Q 001386 594 LAAGDDHVIKIWDMNKVQLLTTIDA 618 (1088)
Q Consensus 594 ~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1088)
.+-...+.|..++..+|+....+..
T Consensus 223 wtd~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 223 WTDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp EEETTTTEEEEEETTTCCSCEEEEC
T ss_pred EEecCCCeEEEEECCCCCceEEEeC
Confidence 5555678899999888877666653
No 292
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.98 E-value=0.00057 Score=76.47 Aligned_cols=243 Identities=8% Similarity=0.014 Sum_probs=135.3
Q ss_pred EEEEEEecC--CceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEecCCCEEE
Q 001386 737 ISRLTYNNG--GQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF 814 (1088)
Q Consensus 737 i~~~~~s~~--g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 814 (1088)
...++++++ +..|+.+...+.|+.++...+. +... . ........++++++|.+++
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~-------------------v~~~-~---~~~~~P~giavd~dG~lyV 197 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY-------------------VDIK-T---TNIGQCADVNFTLNGDMVV 197 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTE-------------------EEEE-C---CCCSCEEEEEECTTCCEEE
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCE-------------------EEEe-e---cCCCCccEEEECCCCCEEE
Confidence 457889884 3345554444667766643221 1111 1 1334678999999999544
Q ss_pred EEeCC----c-EEEEEcCCcee-EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecc--ccCCee
Q 001386 815 SASGG----V-ISLYIVMTFKT-ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG--HSKRVT 886 (1088)
Q Consensus 815 ~~~dg----~-i~iwd~~~~~~-~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~--h~~~V~ 886 (1088)
+...+ . +...+...+.. ...+. .......++++|.++.+.++-..++.|+.+|..++.....+.. ....-.
T Consensus 198 ad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~ 276 (433)
T 4hw6_A 198 VDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNF 276 (433)
T ss_dssp EECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCE
T ss_pred EcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcc
Confidence 44322 1 33333322111 01111 2234567889985566666666778999999987766333221 122234
Q ss_pred EEEECCCCCEEEEE-eCCCcEEEEEcCC--CceeeeeeeecC---CCC------ccCCCCeEEEEE---------cCCCC
Q 001386 887 GLVFSDALNILVSS-GGDAQIFVWDVDG--WGIQTCRSLQTP---DGV------MTLAPSETHIQF---------HKDQT 945 (1088)
Q Consensus 887 ~l~~s~dg~~las~-s~Dg~i~iwd~~~--~~~~~~~~~~~~---~~~------~~~~~~v~~~~f---------s~dg~ 945 (1088)
.++|+|+|++|..+ ...+.|+.++.+. +.......+... .+. .........++| .++|.
T Consensus 277 ~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~ 356 (433)
T 4hw6_A 277 HIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD 356 (433)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE
T ss_pred cEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc
Confidence 69999999955544 4567888888763 221111111111 010 001124678999 77787
Q ss_pred EEEE-EeCCeEEEEEcCcceeeeeeecC----------------CCcCEEEEEEe-eCCCEEEEEeCCCcEEEEEcC
Q 001386 946 RFLL-VHETHLAIYEAEELTCLKQWFPI----------------SSVPISQATFS-CDCRMVFTSFVDGTLSIHEAS 1004 (1088)
Q Consensus 946 ~l~~-~~d~~i~vwd~~~~~~~~~~~~~----------------h~~~v~~l~fs-~dg~~l~s~s~dg~v~vwd~~ 1004 (1088)
+.++ ...+.|+.++. +|......-.+ .-.....++++ ++|.++++=...+.|+..+++
T Consensus 357 lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 357 FYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 7777 45678999985 55433221110 12347789999 566666655566778877654
No 293
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.95 E-value=0.0012 Score=73.93 Aligned_cols=243 Identities=11% Similarity=0.152 Sum_probs=138.2
Q ss_pred CCeEEEEECC-CCCEEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeC-CC----cEEEE
Q 001386 397 VSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DK----TIKVW 470 (1088)
Q Consensus 397 ~~V~~l~~s~-dg~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~-d~----~i~vw 470 (1088)
.....++++| ++..|.++...+.|+.+|..++... .+.........++|+++++. |+.+.. ++ .+.+.
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~----~~~~~~~~P~~ia~d~~G~~--lyvad~~~~~~~~~v~~~ 210 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS----TVYSGLSKVRTICWTHEADS--MIITNDQNNNDRPNNYIL 210 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE----EEECCCSCEEEEEECTTSSE--EEEEECCSCTTSEEEEEE
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE----EEecCCCCcceEEEeCCCCE--EEEEeCCCCcccceEEEE
Confidence 3567899998 4666666655578999999876422 23334456889999999984 444433 22 23334
Q ss_pred eCCCCcee--EEeccCCccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecC-CCCceEEEEEccCCCEEEEE
Q 001386 471 DAVTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PGLGCTRMAYSANGRRLFSC 547 (1088)
Q Consensus 471 d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~ 547 (1088)
+ ..+... ..+.. ......+++.+. ++.++++-..++.|..++.+.......... .......++|+|+|++|+.+
T Consensus 211 ~-~~g~~~~~~~l~~-~~~p~giavdp~-~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~ 287 (430)
T 3tc9_A 211 T-RESGFKVITELTK-GQNCNGAETHPI-NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIV 287 (430)
T ss_dssp E-GGGTSCSEEEEEE-CSSCCCEEECTT-TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEE
T ss_pred e-CCCceeeeeeecc-CCCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEE
Confidence 4 334332 22221 122344555332 566677777788999999876554222222 22346789999999977776
Q ss_pred eeCCCCceeEEEEeCCC--Cce--eEEEeccc------------cccccEE-EEEEe--------CCCCEEEEEeCCCcE
Q 001386 548 GTSKEGESFLVEWNESE--GAI--KRTYQGLQ------------LQHNSVS-VVHFD--------TAKDQILAAGDDHVI 602 (1088)
Q Consensus 548 ~~~~~~~~~i~iwd~~~--~~~--~~~~~~~~------------~~~~~v~-~~~~~--------~~~~~l~~~s~dg~i 602 (1088)
.. ....|..++... +.. ...+.+.. ..-.... .++.. +++..+++-...+.|
T Consensus 288 d~---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I 364 (430)
T 3tc9_A 288 VV---NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCI 364 (430)
T ss_dssp ET---TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEE
T ss_pred EC---CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEE
Confidence 42 245677776542 322 22332210 0011223 45553 335555555567889
Q ss_pred EEEEcCCCeeeEEEeCC-----C---C-------CCCCceEEEecC-CCEEEEEeCCCcEEEEeCC
Q 001386 603 KIWDMNKVQLLTTIDAG-----G---G-------LPENPRICFNKN-GTLLAVIANENRIKILETP 652 (1088)
Q Consensus 603 ~iwd~~~~~~~~~~~~~-----~---~-------~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~ 652 (1088)
+.++ .+|......... + + ...-..++++|+ +.++++-...+.|+.++.+
T Consensus 365 ~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 365 RILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 9888 456544333210 0 0 113467999984 6555555556778777653
No 294
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.92 E-value=0.0028 Score=70.74 Aligned_cols=253 Identities=11% Similarity=0.022 Sum_probs=146.1
Q ss_pred CeeEEEEec-CCCEEEEEe--CCcEEEEEcCCceeEEEecCC---CCCeEEEEE-------cCCCCcEEEEEeCCC----
Q 001386 800 AVPCFALSK-NDAYLFSAS--GGVISLYIVMTFKTILTIMPP---SPTATSLAF-------NPHDNNVIAIGMDDS---- 862 (1088)
Q Consensus 800 ~v~~~~~s~-dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~---~~~i~~l~~-------sp~d~~~lasg~~dg---- 862 (1088)
....|+|+| +...|.++. .+.|++.|.+++......... ......++| ++ +++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 567899998 455555554 356999999887766544432 235889999 99 677555555443
Q ss_pred ---eEEEEEcCC-ceee-----eeeccccCCeeEEEECCC-CCEEEEEeCCCcEEEEEcC-------CCcee--------
Q 001386 863 ---TILIYNARS-SEVI-----SKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVD-------GWGIQ-------- 917 (1088)
Q Consensus 863 ---~i~lwd~~~-~~~~-----~~l~~h~~~V~~l~~s~d-g~~las~s~Dg~i~iwd~~-------~~~~~-------- 917 (1088)
.|.+++... +... ..+... .....++++|+ +.++++-..++.|..+|++ ++...
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 366776443 2221 122221 23457889995 5555566678889999998 54430
Q ss_pred --eeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE--eCCeEEEEEcC--cceee--eeeec-----CC---------Cc
Q 001386 918 --TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAE--ELTCL--KQWFP-----IS---------SV 975 (1088)
Q Consensus 918 --~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~--~d~~i~vwd~~--~~~~~--~~~~~-----~h---------~~ 975 (1088)
.......... .....++|+|+|++|.++ ..+.|+.++.. ++... ..+.. +. -.
T Consensus 298 g~~~~l~~~~~~-----~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~ 372 (496)
T 3kya_A 298 NTFKQLFTIADP-----SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN 372 (496)
T ss_dssp TTEEEEEECSSS-----SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred cccceeEecCCC-----CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence 0112222221 235799999999965554 55788886543 33221 11110 10 12
Q ss_pred CEE-EEEEe-------eCCCEEEEEeCCCcEEEEEcCCCceEEEeccccc------cCCCC-cc------ccccceEEEE
Q 001386 976 PIS-QATFS-------CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY------LRPTT-SC------LHVYPHAIAA 1034 (1088)
Q Consensus 976 ~v~-~l~fs-------~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~------~~~~~-~~------~~~~~~~~~~ 1034 (1088)
... .++.. .+|.++++=.....|+.++ .+|......-.... ...+. .+ .=-.|..|++
T Consensus 373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIav 451 (496)
T 3kya_A 373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVY 451 (496)
T ss_dssp SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEE
T ss_pred CCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEE
Confidence 344 44444 4566666666778999998 56754332221100 00000 01 1134788999
Q ss_pred CCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 1035 HPLKPTQFAVGLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 1035 ~p~d~~~l~~~~~dg~v~~w~l~~~~ 1060 (1088)
+++++.++++=...+.|+.+++....
T Consensus 452 d~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 452 DDVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred ECCCCEEEEEeCCCCEEEEEECCCCc
Confidence 98336777766677899999996644
No 295
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.87 E-value=0.015 Score=61.75 Aligned_cols=234 Identities=8% Similarity=-0.037 Sum_probs=142.7
Q ss_pred CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee-EEeccCCccEEEEeee
Q 001386 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPVYSLCPH 494 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~ 494 (1088)
....|+..++.+....... .+ .....+..++|.+.+.. ++++-...+.|..+++..+... ..+...-.....+++.
T Consensus 11 ~~~~I~~i~l~~~~~~~~~-~~-~~~~~~~~ld~d~~~~~-lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd 87 (318)
T 3sov_A 11 NRRDLRLVDATNGKENATI-VV-GGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD 87 (318)
T ss_dssp CEEEEEEEETTCTTSCCEE-EE-EEEEEEEEEEEEGGGTE-EEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEE
T ss_pred ccCeEEEEECCCCceEEEE-Ee-cCCCccEEEEEEeCCCE-EEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEE
Confidence 3456899999876411111 12 22235678999987664 4555666788999998766422 2222222334556664
Q ss_pred eeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEecc
Q 001386 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1088)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1088)
+. ++.+.++-...+.|.+++++.................+++.|.+..|+.+... ....|...+.............
T Consensus 88 ~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~--~~~~I~r~~~dG~~~~~~~~~~ 164 (318)
T 3sov_A 88 WL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSRFIIINSE 164 (318)
T ss_dssp TT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECS--SSCEEEEEETTSCSCEEEECSS
T ss_pred cC-CCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecC--CCCEEEEEEcCCCCeEEEEECC
Confidence 32 45566666777899999988655544444445567899999987777665421 2456888887643322222221
Q ss_pred ccccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeCCC
Q 001386 575 QLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1088)
Q Consensus 575 ~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 653 (1088)
-...+.+++++++..|+.+. ..+.|..+|+........... .......+++.. +.++.+-...+.|..++..+
T Consensus 165 ---l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~--~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 165 ---IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFE-DILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp ---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--CCSCEEEEEEET-TEEEEEETTTTEEEEEETTT
T ss_pred ---CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecC--CCCCceEEEEeC-CEEEEEecCCCeEEEEECCC
Confidence 24678999999777776654 567899999865333322221 122345677753 44555655678898898877
Q ss_pred CCcccccc
Q 001386 654 SNSVDAAG 661 (1088)
Q Consensus 654 ~~~~~~~~ 661 (1088)
++....+.
T Consensus 239 G~~~~~i~ 246 (318)
T 3sov_A 239 GEGLREIH 246 (318)
T ss_dssp CCSCEEEE
T ss_pred CCceEEEe
Confidence 76544443
No 296
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.84 E-value=0.015 Score=69.80 Aligned_cols=238 Identities=10% Similarity=-0.021 Sum_probs=145.2
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCC----ceeEEeccCC
Q 001386 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG 485 (1088)
Q Consensus 410 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~----~~~~~~~~~~ 485 (1088)
+|+.+ ....|+..++...... .+......+..++|.+.+.. ++++-...+.|+.+++... .....+...-
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~----~l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred ccccc-cccceeEeeccCCcce----eeecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence 44444 3445888888765432 23334556789999986664 4555566788999998753 2223333233
Q ss_pred ccEEEEeeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001386 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1088)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1088)
.....|++.+. .+.++++-...+.|.+.+++.......+.........|++.|.+.+|+..-.. ....|...++...
T Consensus 471 ~~P~GLAvD~~-~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g--~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 471 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 547 (791)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred CCcceeeeeec-CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC--CCCeEEEEecCCC
Confidence 44556777443 33566677778899999998666555554455567899999987777765421 1256888888654
Q ss_pred ceeEEEeccccccccEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCC
Q 001386 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1088)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1088)
.....+.... .....|++.+.+..|+.+. ..+.|...++........+...........|++.. +.++++-...+
T Consensus 548 ~~~~lv~~~l---~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~ 623 (791)
T 3m0c_C 548 DIYSLVTENI---QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINE 623 (791)
T ss_dssp CEEEEECSSC---SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTT
T ss_pred ceEEEEeCCC---CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCC
Confidence 4433333322 5688999998877777764 55789999986655444444322222334555532 33444444567
Q ss_pred cEEEEeCCCCCccccc
Q 001386 645 RIKILETPESNSVDAA 660 (1088)
Q Consensus 645 ~i~iwd~~~~~~~~~~ 660 (1088)
.|...+..+++.+..+
T Consensus 624 ~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 624 AIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEEEETTTCCCCEEE
T ss_pred EEEEEeCCCCcceEEe
Confidence 7888887766554444
No 297
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.82 E-value=0.0064 Score=65.90 Aligned_cols=230 Identities=12% Similarity=0.091 Sum_probs=123.1
Q ss_pred CCeeEEEEecCCCEEEEEeCCcEEEEEcCCcee--EEEec---CCCCCeEEEEEcCC---CCcEEEEEeCC-----CeEE
Q 001386 799 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKT--ILTIM---PPSPTATSLAFNPH---DNNVIAIGMDD-----STIL 865 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~--~~~~~---~~~~~i~~l~~sp~---d~~~lasg~~d-----g~i~ 865 (1088)
.....++|.|||+++++-..|.|.+++ +++. +..+. ........++|+|+ ++.+.++-... +.|.
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 356789999999977776689999998 4432 22221 12356889999993 24444444432 6788
Q ss_pred EEEcCCce------eeeeec---cccCCeeEEEECCCCCEEEEEeCC-------------CcEEEEEcCCCcee------
Q 001386 866 IYNARSSE------VISKLE---GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWGIQ------ 917 (1088)
Q Consensus 866 lwd~~~~~------~~~~l~---~h~~~V~~l~~s~dg~~las~s~D-------------g~i~iwd~~~~~~~------ 917 (1088)
.|+...+. .+..+. +.......++|.|||.+.++.+.. |.|.-++.+. ...
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~ 187 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPFL 187 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCccc
Confidence 88877531 122233 111223689999999877765432 3444444432 100
Q ss_pred -----eeeeeecCCCCccCCCCeEEEEEcC-CCCEEEEE-eCCeE------EEEEcCcce------------------ee
Q 001386 918 -----TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV-HETHL------AIYEAEELT------------------CL 966 (1088)
Q Consensus 918 -----~~~~~~~~~~~~~~~~~v~~~~fs~-dg~~l~~~-~d~~i------~vwd~~~~~------------------~~ 966 (1088)
....+. .++. ....++|+| +|.+.++- ..+.+ .+.-+..+. .+
T Consensus 188 ~~~~~~~~i~a--~G~r----np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 188 GRRGARPEVYS--LGHR----NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp TCTTSCTTEEE--ECCS----EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred CCCCCCccEEE--EcCC----CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence 000000 1111 256789999 67777762 22221 233223232 11
Q ss_pred eeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEe-ccccccCCCCccccccceEEEECCCCCCEEEEE
Q 001386 967 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI-LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG 1045 (1088)
Q Consensus 967 ~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~ 1045 (1088)
..+ .+......++| .+|..+++....+.|...++......... .....+.. .-++..+++.| ||.++++.
T Consensus 262 ~~~--~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~-----~~rp~~v~~~p-dG~lyv~~ 332 (352)
T 2ism_A 262 YFW--PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG-----FGRLREVQVGP-DGALYVTT 332 (352)
T ss_dssp EEC--TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES-----SCCEEEEEECT-TSCEEEEE
T ss_pred Eec--CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc-----CCCeeEEEECC-CCcEEEEE
Confidence 111 22345677888 56776666556677777777654311000 00011111 13567889999 77777665
Q ss_pred e
Q 001386 1046 L 1046 (1088)
Q Consensus 1046 ~ 1046 (1088)
.
T Consensus 333 ~ 333 (352)
T 2ism_A 333 S 333 (352)
T ss_dssp C
T ss_pred e
Confidence 4
No 298
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.82 E-value=0.0064 Score=67.85 Aligned_cols=253 Identities=7% Similarity=-0.001 Sum_probs=140.7
Q ss_pred cEEEEEEec-CCceEEEecc-ccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEE-------
Q 001386 736 KISRLTYNN-GGQAIFALAS-NGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL------- 806 (1088)
Q Consensus 736 ~i~~~~~s~-~g~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------- 806 (1088)
....++|+| +...|+.+.. .+.|++.|...+.. ....-...........++|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v-------------------~~l~~~~~~~~~~p~~ia~~~~~~~~ 200 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRML-------------------SSPLNINTIPTNRIRSIAFNKKIEGY 200 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEE-------------------EEEECCTTSSCSBEEEEEECCCBTTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEE-------------------EEEEccCccccCCCcEEEEeeccccc
Confidence 467889998 4555555544 45566665443221 1110000012345889999
Q ss_pred ecCCCEEEEEe-CC-c------EEEEEcCC-ceeE-----EEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcC--
Q 001386 807 SKNDAYLFSAS-GG-V------ISLYIVMT-FKTI-----LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-- 870 (1088)
Q Consensus 807 s~dg~~l~~~~-dg-~------i~iwd~~~-~~~~-----~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~-- 870 (1088)
+++|..|+++. .+ . |.+++... +... ..+.. ......++++|+++.++++-..++.|+.+|+.
T Consensus 201 d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~ 279 (496)
T 3kya_A 201 ADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDY 279 (496)
T ss_dssp BCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHH
T ss_pred CCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccc
Confidence 99999777775 22 2 55665443 1211 12211 12345778899667777777788899999997
Q ss_pred -----Ccee-----------eeee-c-cccCCeeEEEECCCCCEEEEE-eCCCcEEEEEcCCC--ceeeeeeeecC---C
Q 001386 871 -----SSEV-----------ISKL-E-GHSKRVTGLVFSDALNILVSS-GGDAQIFVWDVDGW--GIQTCRSLQTP---D 926 (1088)
Q Consensus 871 -----~~~~-----------~~~l-~-~h~~~V~~l~~s~dg~~las~-s~Dg~i~iwd~~~~--~~~~~~~~~~~---~ 926 (1088)
++.. ...+ . +.......|+|+|+|++|..+ +....|+.++.+.. .......+... .
T Consensus 280 ~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~ 359 (496)
T 3kya_A 280 FKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQS 359 (496)
T ss_dssp HHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBC
T ss_pred cccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCC
Confidence 5543 1121 1 123345789999999964444 56677888666532 11101111111 1
Q ss_pred CCc------cCCCCeE-EEEEc-------CCCCEEEE-EeCCeEEEEEcCcceeeeeeec-------------C------
Q 001386 927 GVM------TLAPSET-HIQFH-------KDQTRFLL-VHETHLAIYEAEELTCLKQWFP-------------I------ 972 (1088)
Q Consensus 927 ~~~------~~~~~v~-~~~fs-------~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~-------------~------ 972 (1088)
+.. ....... .++.. ++|.+.++ ...+.|+.++ .+|.. ..+.. +
T Consensus 360 G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~ 437 (496)
T 3kya_A 360 GYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDL 437 (496)
T ss_dssp CCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEET
T ss_pred cccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCccccccCCCCc
Confidence 110 0011234 45554 56666666 4667899998 45533 22221 1
Q ss_pred ----CCcCEEEEEEeeC-CCEEEEEeCCCcEEEEEcCCCceEE
Q 001386 973 ----SSVPISQATFSCD-CRMVFTSFVDGTLSIHEASNLEVQC 1010 (1088)
Q Consensus 973 ----h~~~v~~l~fs~d-g~~l~s~s~dg~v~vwd~~~~~~~~ 1010 (1088)
.-.....|+++++ |.++++=+....|+.+++.......
T Consensus 438 ~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 438 REVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp TTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred hhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 1134678999997 6666655567889998887766543
No 299
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.81 E-value=0.0076 Score=63.27 Aligned_cols=198 Identities=12% Similarity=0.152 Sum_probs=125.8
Q ss_pred CCCEEEEEe-CCcEEEEEcCCceeEEEecCCCCCeEEEEEcCC---CCc---EEEEEeC---CCeEEEEEc--CCceeee
Q 001386 809 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH---DNN---VIAIGMD---DSTILIYNA--RSSEVIS 876 (1088)
Q Consensus 809 dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~---d~~---~lasg~~---dg~i~lwd~--~~~~~~~ 876 (1088)
...+++... .+.+.+||+ +|+.++.+.. +.+..+..-|. +++ ++++... +++|.+|++ .+++ +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 334444333 678999999 7898888863 56666666651 122 3333333 579999977 4443 44
Q ss_pred eecc------cc-CCeeEEEE--CCC-CC-EEEEEeCCCcEEEEEcCC---CceeeeeeeecCCCCccCCCCeEEEEEcC
Q 001386 877 KLEG------HS-KRVTGLVF--SDA-LN-ILVSSGGDAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQFHK 942 (1088)
Q Consensus 877 ~l~~------h~-~~V~~l~~--s~d-g~-~las~s~Dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~fs~ 942 (1088)
.+.. .. ..+..+++ +|. ++ +++....+|.+..|++.. +. ...+.+..+.-. ..+..++..+
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~-~~~~lVR~f~lg----sq~EgcvvDd 189 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY-ISGKKVRAFKMN----SQTEGMAADD 189 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC-EEEEEEEEEECS----SCEEEEEEET
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc-ccceEEEEecCC----CCcceEEEcC
Confidence 4421 11 56777888 774 44 677788899999999943 22 222333332221 2578899999
Q ss_pred CCCEEEEEeC-CeEEEEEcC-----cceeeeeeecCC-CcCEEEEEE--eeCCC-EEEEEe-CCCcEEEEEcC-CCceEE
Q 001386 943 DQTRFLLVHE-THLAIYEAE-----ELTCLKQWFPIS-SVPISQATF--SCDCR-MVFTSF-VDGTLSIHEAS-NLEVQC 1010 (1088)
Q Consensus 943 dg~~l~~~~d-~~i~vwd~~-----~~~~~~~~~~~h-~~~v~~l~f--s~dg~-~l~s~s-~dg~v~vwd~~-~~~~~~ 1010 (1088)
....|.++.+ ..|..++.. +++.+..+-.++ ...+..|++ .++|+ ||++++ .+++..|||.. +.+.+.
T Consensus 190 ~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg 269 (355)
T 3amr_A 190 EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVA 269 (355)
T ss_dssp TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEE
Confidence 8888888754 456666644 345554433344 346888887 56666 777777 67799999997 778888
Q ss_pred Eeccc
Q 001386 1011 RILST 1015 (1088)
Q Consensus 1011 ~~~~~ 1015 (1088)
++...
T Consensus 270 ~f~Ig 274 (355)
T 3amr_A 270 DFRIT 274 (355)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 87633
No 300
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.75 E-value=0.038 Score=66.28 Aligned_cols=215 Identities=10% Similarity=-0.051 Sum_probs=130.7
Q ss_pred CCCCeEEEEECCCCCEE-EEEeCCCEEEEEEccCCCcc-cceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeC
Q 001386 395 PGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1088)
Q Consensus 395 h~~~V~~l~~s~dg~~l-as~~~dg~i~vwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~ 472 (1088)
....+..|+|.+.+..| ++-...+.|+.+++...... .....+.........|++.+.++. ++++-...+.|.+.++
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~l 500 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADT 500 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeC
Confidence 34667899999855554 45456678999998753210 111123323456678999888765 4566667789999997
Q ss_pred CCCceeEEeccCCccEEEEeeeeeCCceEEEEEecC-CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCC
Q 001386 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
........+...-.....|++.+. .+.++++-... +.|...+++.......+...-.....|++++.+..|+.+-.
T Consensus 501 dG~~~~~l~~~~l~~P~gIaVDp~-~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~-- 577 (791)
T 3m0c_C 501 KGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-- 577 (791)
T ss_dssp TSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET--
T ss_pred CCCeEEEEEeCCCCCcceEEEecC-CCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC--
Confidence 755433333334455788888653 33444444333 78888888766555555444457889999998888887742
Q ss_pred CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEE-eCCCcEEEEEcCCCeeeEEEe
Q 001386 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTID 617 (1088)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~ 617 (1088)
+...|...++........+.... .......+++. +.+|+.+ ...+.|...+..+|+.+..+.
T Consensus 578 -~~~~I~~~d~dG~~~~~v~~~~~-~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 578 -KLHSISSIDVNGGNRKTILEDEK-RLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp -TTTEEEEEETTSCSCEEEEECTT-TTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred -CCCcEEEEecCCCceEEEecCCC-ccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 24578889886554444443311 11234556653 3344444 456778888877776666654
No 301
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.69 E-value=0.016 Score=62.77 Aligned_cols=229 Identities=13% Similarity=0.072 Sum_probs=126.8
Q ss_pred CCeeEEEEecCCCEEEEEeCCcEEEEEcCCce-eEEEec---CCCCCeEEEEEcCC---CCcEEEEEeC---C----CeE
Q 001386 799 EAVPCFALSKNDAYLFSASGGVISLYIVMTFK-TILTIM---PPSPTATSLAFNPH---DNNVIAIGMD---D----STI 864 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~-~~~~~~---~~~~~i~~l~~sp~---d~~~lasg~~---d----g~i 864 (1088)
.....++|.|||+++++-.+|.|.+++ .+++ .+..+. ........++++|+ ++.+.++-+. + +.|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 356789999999977776689999997 3454 222221 12356889999993 3555444432 3 578
Q ss_pred EEEEcCCc-------ee-eeeecc-ccCCeeEEEECCCCCEEEEEeCC-------------CcEEEEEcCCCcee-----
Q 001386 865 LIYNARSS-------EV-ISKLEG-HSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWGIQ----- 917 (1088)
Q Consensus 865 ~lwd~~~~-------~~-~~~l~~-h~~~V~~l~~s~dg~~las~s~D-------------g~i~iwd~~~~~~~----- 917 (1088)
..|+.... +. +..+.. .......|+|.|||.+.++.+.. |.|.-.+.+.. ..
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~p~~npf 186 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-PPADNPF 186 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC-CCTTSSS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC-CCCCCCC
Confidence 88887653 11 122321 11124679999999887775432 33444443321 00
Q ss_pred -eeeeeecCCCCccCCCCeEEEEEcC-CCCEEEEE--eCC--eEEEEEcCcce------------------eeeeeecCC
Q 001386 918 -TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV--HET--HLAIYEAEELT------------------CLKQWFPIS 973 (1088)
Q Consensus 918 -~~~~~~~~~~~~~~~~~v~~~~fs~-dg~~l~~~--~d~--~i~vwd~~~~~------------------~~~~~~~~h 973 (1088)
....+. .++. ....++|+| +|++.++- .+. .|.+.. .|. .+..+. ..
T Consensus 187 ~~~~i~a--~G~r----np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~ 257 (354)
T 3a9g_A 187 PNSPIWS--YGHR----NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTG-SE 257 (354)
T ss_dssp TTCCEEE--ECCS----CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECT-TC
T ss_pred CCCcEEE--EccC----CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecC-CC
Confidence 001111 1222 256899999 67777762 222 243332 222 111110 11
Q ss_pred CcCEEEEEEe-------eCCCEEEEEeCCCcEEEEEcCCC-ceEEEeccccccCCCCccccccceEEEECCCCCCEEEEE
Q 001386 974 SVPISQATFS-------CDCRMVFTSFVDGTLSIHEASNL-EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG 1045 (1088)
Q Consensus 974 ~~~v~~l~fs-------~dg~~l~s~s~dg~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~ 1045 (1088)
......++|. .+|.++++....+.|...++... ....... .+.. ..-++..+++.| ||.++++.
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~---~~~~----~~~rp~~v~~~p-DG~lyv~~ 329 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIST---FFKN----VFGRLRDVVIDD-DGGILIST 329 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEE---ECTT----TSCCEEEEEECT-TSCEEEEE
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceee---eccC----CCCCeeEEEECC-CCcEEEEE
Confidence 3467788883 57777776666778888888753 3321111 1111 123567899999 78777766
Q ss_pred e
Q 001386 1046 L 1046 (1088)
Q Consensus 1046 ~ 1046 (1088)
.
T Consensus 330 ~ 330 (354)
T 3a9g_A 330 S 330 (354)
T ss_dssp C
T ss_pred e
Confidence 4
No 302
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.65 E-value=0.014 Score=61.36 Aligned_cols=191 Identities=12% Similarity=0.142 Sum_probs=117.9
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeC--Cce---EEEEEe-c--CCeEEEEECCCCC-ceEEecC
Q 001386 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE--NIH---FIFSIS-V--DGKIKAWLYDSLG-ARVDYDA 527 (1088)
Q Consensus 457 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~---~l~s~~-~--dg~i~iwd~~~~~-~~~~~~~ 527 (1088)
+++.....+-+.+||+ +|+.++.+.. +.++.+.+.+.- +|+ ++++.. . +++|.+|+++... ....+..
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 4565666788999998 9999988864 556666654420 122 223333 3 5789999875322 2333311
Q ss_pred ------CC-CceEEEEE--ccC-CC-EEEEEeeCCCCceeEEEEeC-------CCCceeEEEeccccccccEEEEEEeCC
Q 001386 528 ------PG-LGCTRMAY--SAN-GR-RLFSCGTSKEGESFLVEWNE-------SEGAIKRTYQGLQLQHNSVSVVHFDTA 589 (1088)
Q Consensus 528 ------~~-~~v~~~~~--s~~-g~-~l~~~~~~~~~~~~i~iwd~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~ 589 (1088)
.. ..+..+|+ +|. ++ ++++... ++.+..|++ .+.+.++++... ..+..|...+.
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k----~G~~~q~~l~~~~~g~~~~~lVR~f~lg----sq~EgcvvDd~ 190 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK----EGEFEQYELKADKNGYISGKKVRAFKMN----SQTEGMAADDE 190 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECS----SSEEEEEEEEECTTSCEEEEEEEEEECS----SCEEEEEEETT
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECC----CCeEEEEEEEeCCCCcccceEEEEecCC----CCcceEEEcCC
Confidence 11 45666777 774 44 3444432 456877777 234556666653 46888899999
Q ss_pred CCEEEEEeCCCcEEEEEcC-----CCeeeEEEeCCCCCCCCceEEE--ecCCC-EEEEEe-CCCcEEEEeCC-CCCccc
Q 001386 590 KDQILAAGDDHVIKIWDMN-----KVQLLTTIDAGGGLPENPRICF--NKNGT-LLAVIA-NENRIKILETP-ESNSVD 658 (1088)
Q Consensus 590 ~~~l~~~s~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~v~~--s~~~~-~l~~~~-~dg~i~iwd~~-~~~~~~ 658 (1088)
..+|+.+-++..|..++.+ +++.+..+....-...+..+++ .++++ +|++.+ .+.++.+||.. +.+.+.
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg 269 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVA 269 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEE
Confidence 9999999998777777754 3455555433222235677777 45555 555555 57799999996 444333
No 303
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.64 E-value=0.0081 Score=62.46 Aligned_cols=204 Identities=12% Similarity=0.087 Sum_probs=124.8
Q ss_pred CCCeeEEEEecCCCEEEEEe--CCcEEEEEcCCceeEEE-ecC----CC--CCeEEEEE---cCCCCcEEEEEeC-----
Q 001386 798 QEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILT-IMP----PS--PTATSLAF---NPHDNNVIAIGMD----- 860 (1088)
Q Consensus 798 ~~~v~~~~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~-~~~----~~--~~i~~l~~---sp~d~~~lasg~~----- 860 (1088)
.....++.|.+....+..++ .++|..||...+..... +.. .. ..+..+.+ .| +++++++...
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFN 90 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTC
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccc
Confidence 34456789988666666665 89999999986544333 221 11 13578999 68 6888876442
Q ss_pred --------CCeEEEEEcC---Cceeeeeec--ccc-----------CCeeEEEECCCCCEEEEEeCC-CcEEEEEcCCCc
Q 001386 861 --------DSTILIYNAR---SSEVISKLE--GHS-----------KRVTGLVFSDALNILVSSGGD-AQIFVWDVDGWG 915 (1088)
Q Consensus 861 --------dg~i~lwd~~---~~~~~~~l~--~h~-----------~~V~~l~~s~dg~~las~s~D-g~i~iwd~~~~~ 915 (1088)
+..|..||+. +++.+.... +.. .....++..++|+..++++.. +.|...+-+...
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT 170 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE
Confidence 6789999999 787664432 211 247899999999999988877 765555554422
Q ss_pred eeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-eCCeEEEEEcCccee--eeeeecC---CCcCEEEE-EEeeCCCE
Q 001386 916 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTC--LKQWFPI---SSVPISQA-TFSCDCRM 988 (1088)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~d~~i~vwd~~~~~~--~~~~~~~---h~~~v~~l-~fs~dg~~ 988 (1088)
. ....+...... .....+.+++.|||+.|++. ..+.+..+|+.+... +..-..+ .......+ .--.+|+.
T Consensus 171 ~-~~~~~~~~~~~--~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~v 247 (334)
T 2p9w_A 171 V-STFAWESGNGG--QRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNES 247 (334)
T ss_dssp E-EEEEECCCCSS--SCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEE
T ss_pred E-eeeeecCCCcc--cccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEE
Confidence 1 11111111111 11246799999999988883 478899999885333 2111002 12233443 33457887
Q ss_pred -EEEEeCCCcEEEEEcCC
Q 001386 989 -VFTSFVDGTLSIHEASN 1005 (1088)
Q Consensus 989 -l~s~s~dg~v~vwd~~~ 1005 (1088)
|++....+.+.+.+-+.
T Consensus 248 llV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 248 VLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEEETTEEEEEECSST
T ss_pred EEEEcCCCCEEEEECCCC
Confidence 45555566555555443
No 304
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.64 E-value=0.076 Score=54.49 Aligned_cols=237 Identities=11% Similarity=0.080 Sum_probs=147.3
Q ss_pred eeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCE
Q 001386 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 419 (1088)
Q Consensus 340 v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~ 419 (1088)
.-.+|..+ ++|.-. ..++.|+|+++.++++... -...|..=.|-.+ +.|+..+ +..
T Consensus 72 AIMnP~~~-ViALra-g~~LQiFnletK~klks~~--------------------~~e~VvfWkWis~-~~L~lVT-~ta 127 (365)
T 2xzh_A 72 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISL-NTVALVT-DNA 127 (365)
T ss_dssp EEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEE--------------------CSSCEEEEEECSS-SEEEEEE-SSE
T ss_pred eeeCCCcc-EEEEec-CCeEEEechHHhhhhccee--------------------cCCccEEEEecCC-CeEEEEc-CCc
Confidence 34578777 566544 5889999999998887633 2357777777744 4555554 445
Q ss_pred EEEEEccCCCcccceeEeccCC----CCEEEEEecCCCCcEEEEEEe------CCCcEEEEeCCCCceeEEeccCCccEE
Q 001386 420 VQLYAYHGGSDARQQLEIDAHV----GNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1088)
Q Consensus 420 i~vwd~~~~~~~~~~~~~~~h~----~~v~~~~~s~d~~~l~l~s~s------~d~~i~vwd~~~~~~~~~~~~~~~~v~ 489 (1088)
|+-|+++.... +.+.+..|. ..|..-..+++.+++ +++|- -.|.+.+|..+.+ .-+.++||.+...
T Consensus 128 VyHWs~~~~s~--P~kvFdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~ 203 (365)
T 2xzh_A 128 VYHWSMEGESQ--PVKMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFA 203 (365)
T ss_dssp EEEEESSTTCC--CEEEEECCGGGTTCEEEEEEECTTSCEE-EEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEE
T ss_pred EEEEcccCCCC--CceeeecchhcccceEEEEEECCCCCEE-EEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeE
Confidence 99999986432 222344443 357777888999963 33332 2367889986554 4567788877666
Q ss_pred EEeeeeeCCce-EEEEEecC---CeEEEEECCCC---Cc-----eEEec-C---CCCceEEEEEccCCCEEEEEeeCCCC
Q 001386 490 SLCPHAKENIH-FIFSISVD---GKIKAWLYDSL---GA-----RVDYD-A---PGLGCTRMAYSANGRRLFSCGTSKEG 553 (1088)
Q Consensus 490 ~~~~~~~~~~~-~l~s~~~d---g~i~iwd~~~~---~~-----~~~~~-~---~~~~v~~~~~s~~g~~l~~~~~~~~~ 553 (1088)
.+.+...+... ++..+... +.+++-++... .. ...+. . ...-..++..|+.-..++..+.
T Consensus 204 ~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK---- 279 (365)
T 2xzh_A 204 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---- 279 (365)
T ss_dssp EECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEET----
T ss_pred EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeC----
Confidence 65543322222 33333332 68899988543 11 11111 1 1223446777777777777754
Q ss_pred ceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe
Q 001386 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1088)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1088)
.|.+++||+.++.++..-+-.. ..|...+......-+++....|.|.--.++..+
T Consensus 280 ~G~ihlyDleTgt~i~~nrIS~---d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 280 YGYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp TSEEEEEETTTCCEEEEEECCS---SCEEEEEEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred CcEEEEEEcccCcEEEEeccCC---CceEEecccCCCCcEEEEcCCCEEEEEEECccc
Confidence 6789999999999987766555 666666665555566666677766655554433
No 305
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.60 E-value=0.087 Score=54.05 Aligned_cols=232 Identities=13% Similarity=0.123 Sum_probs=152.3
Q ss_pred eEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-ceeeeeecc
Q 001386 802 PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEG 880 (1088)
Q Consensus 802 ~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~-~~~~~~l~~ 880 (1088)
.+.-++|..+.+|.-....+.+||+++.+.+....-. ..|.--.|-. .+.|+..+ +..|+-|++.. ..+++.+.-
T Consensus 70 dsAIMnP~~~ViALrag~~LQiFnletK~klks~~~~-e~VvfWkWis--~~~L~lVT-~taVyHWs~~~~s~P~kvFdR 145 (365)
T 2xzh_A 70 DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDR 145 (365)
T ss_dssp SEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEECS-SCEEEEEECS--SSEEEEEE-SSEEEEEESSTTCCCEEEEEC
T ss_pred ceeeeCCCccEEEEecCCeEEEechHHhhhhcceecC-CccEEEEecC--CCeEEEEc-CCcEEEEcccCCCCCceeeec
Confidence 3566799999999888888999999999988887743 4666667764 34555554 56799999975 355566655
Q ss_pred cc----CCeeEEEECCCCCEEEEEeC-------CCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCC----
Q 001386 881 HS----KRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT---- 945 (1088)
Q Consensus 881 h~----~~V~~l~~s~dg~~las~s~-------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~---- 945 (1088)
|. ..|..-..+++.++++..|- .|.+.+|..+.+. -+..+||.. .-..+-.+|.
T Consensus 146 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------sQ~ieGhaa-----~F~~~~~~g~~~~~ 214 (365)
T 2xzh_A 146 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA-----SFAQFKMEGNAEES 214 (365)
T ss_dssp CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE------EEEECCSEE-----EEEEECCTTCSSCE
T ss_pred chhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc------cceeeeeee-----eeEEEecCCCCCCc
Confidence 43 46777888999999876653 3778899988743 445566653 2223333332
Q ss_pred EEEE-EeC----CeEEEEEcCcc---e------eeeeeecC--CCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceE
Q 001386 946 RFLL-VHE----THLAIYEAEEL---T------CLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1009 (1088)
Q Consensus 946 ~l~~-~~d----~~i~vwd~~~~---~------~~~~~~~~--h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~ 1009 (1088)
.|.+ +.. +++++-++... . ....+++. ..+-..++..|+--..+..-+.-|.|.+||+.+|.++
T Consensus 215 ~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i 294 (365)
T 2xzh_A 215 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 294 (365)
T ss_dssp EEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEE
Confidence 2332 322 58999988432 1 11111221 2556677888887778888889999999999999998
Q ss_pred EEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Q 001386 1010 CRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1059 (1088)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~ 1059 (1088)
.+-+.. ...+.. -+.+. +..-++.....|.|.--.+.+.
T Consensus 295 ~~nrIS--------~d~iF~--ta~~~-~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 295 YMNRIS--------GETIFV--TAPHE-ATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEEECC--------SSCEEE--EEEEG-GGTEEEEEETTCEEEEEEECTT
T ss_pred EEeccC--------CCceEE--ecccC-CCCcEEEEcCCCEEEEEEECcc
Confidence 776521 122222 22333 2344666668888877777554
No 306
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.57 E-value=0.00036 Score=83.32 Aligned_cols=205 Identities=10% Similarity=0.021 Sum_probs=124.2
Q ss_pred CCeeEEEEecCCCEEEEEe--CCcEEEEEcCC----ceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc
Q 001386 799 EAVPCFALSKNDAYLFSAS--GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 872 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~--dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~ 872 (1088)
..+..++|++.+..|..+. .+.|..+++.+ ......+.........+++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3456789999888877775 57899999875 22222222222345678888645666666666789999998765
Q ss_pred eeeeeeccccCCeeEEEECCCCCEEEEEeC--CCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE
Q 001386 873 EVISKLEGHSKRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 950 (1088)
Q Consensus 873 ~~~~~l~~h~~~V~~l~~s~dg~~las~s~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~ 950 (1088)
.....+.........|++.|++.+|+.+.. .+.|...+++..... .+.. .. . .....|+|+|++..|..+
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~---~l~~-~~-l---~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY---SLVT-EN-I---QWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC---EESC-SS-C---SSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee---EEEe-CC-C---CCccEEEEeccCCEEEEE
Confidence 443333333345678999997665554432 267777777653211 1110 11 1 135689999987666654
Q ss_pred --eCCeEEEEEcCcceeeeeeecC--CCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001386 951 --HETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 951 --~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1013 (1088)
..+.|.++++... ....+... .......|++..+ .++++....+.|..++..+|+.+..+.
T Consensus 558 D~~~~~I~~~d~dG~-~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 558 DSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp ETTTTEEEEECSSSS-CCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred ecCCCeEEEEccCCC-ceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 4568999998643 23332221 1223345555443 344455567899999999998877665
No 307
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.53 E-value=0.022 Score=61.71 Aligned_cols=239 Identities=9% Similarity=0.053 Sum_probs=127.8
Q ss_pred CeeEEEEecCCC-EEEEEeCCcEEEEEcCCceeEEEec-------CCCCCeEEEEEcCC---CCcEEEEEeC-------C
Q 001386 800 AVPCFALSKNDA-YLFSASGGVISLYIVMTFKTILTIM-------PPSPTATSLAFNPH---DNNVIAIGMD-------D 861 (1088)
Q Consensus 800 ~v~~~~~s~dg~-~l~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~l~~sp~---d~~~lasg~~-------d 861 (1088)
....++|.|+|+ ++++-..|.|++++.. ++....+. ........++++|+ ++.+.++-+. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 467899999999 7776668999999854 33221111 12345689999993 3544444332 2
Q ss_pred CeEEEEEcCCc-------ee-eeeec-----cccCCeeEEEECCCCCEEEEEeCC-------------CcEEEEEcCCCc
Q 001386 862 STILIYNARSS-------EV-ISKLE-----GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWG 915 (1088)
Q Consensus 862 g~i~lwd~~~~-------~~-~~~l~-----~h~~~V~~l~~s~dg~~las~s~D-------------g~i~iwd~~~~~ 915 (1088)
..|..|++..+ +. +..+. .|. ...|+|.|||.+.++.+.. |.|.-.+.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 35777766432 11 11222 132 3579999999766665442 345555544310
Q ss_pred ee----------eeeeeecCCCCccCCCCeEEEEEcC-CCCEEEEE--eCCeEEEEEcCcceee----------------
Q 001386 916 IQ----------TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV--HETHLAIYEAEELTCL---------------- 966 (1088)
Q Consensus 916 ~~----------~~~~~~~~~~~~~~~~~v~~~~fs~-dg~~l~~~--~d~~i~vwd~~~~~~~---------------- 966 (1088)
.. ...... .++. ....++|.| +|++.++- .++.=.|.-+..+...
T Consensus 176 p~~npf~~~~~~~~~i~a--~G~r----np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~ 249 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWS--YGIR----NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI 249 (353)
T ss_dssp CTTCTTTTSTTSCTTEEE--ECCS----EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred CCCCCCcCCCCCCccEEE--EcCc----CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence 00 000111 1222 267899999 67766662 2222222222221110
Q ss_pred -------------eeeecCCCcCEEEEEEee-------CCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCcccc
Q 001386 967 -------------KQWFPISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLH 1026 (1088)
Q Consensus 967 -------------~~~~~~h~~~v~~l~fs~-------dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1026 (1088)
....-.+...+..++|.. +|.++++....+.|...++..+....... .+. ...
T Consensus 250 ~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~----~~~ 322 (353)
T 2g8s_A 250 PEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILT----DRG 322 (353)
T ss_dssp TTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESG----GGC
T ss_pred CcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---ccc----CCC
Confidence 000011234677788864 56777766677888888887665433221 110 111
Q ss_pred ccceEEEECCCCCCEEEEEeCCCcEEEEeC
Q 001386 1027 VYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1056 (1088)
Q Consensus 1027 ~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l 1056 (1088)
.++..+++.| ||.++++.. ++.=+||.+
T Consensus 323 ~rp~~v~~~p-dG~lyv~td-~~~g~I~ri 350 (353)
T 2g8s_A 323 QRIRDVRTGP-DGYLYVLTD-ESSGELLKV 350 (353)
T ss_dssp CCEEEEEECT-TSCEEEEEC-STTEEEEEE
T ss_pred CceeEEEECC-CCcEEEEEe-CCCCEEEEE
Confidence 3577899999 888666543 223344544
No 308
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.52 E-value=0.14 Score=54.84 Aligned_cols=238 Identities=12% Similarity=0.084 Sum_probs=148.2
Q ss_pred eeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCC
Q 001386 339 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 418 (1088)
Q Consensus 339 ~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg 418 (1088)
+.-.+|..+ ++|.=. ..++.|+|+++.+.+..+.+ ...|..=.|-. .+.|+..+ +.
T Consensus 70 sAIMnP~~~-iiALra-g~~lQiFnle~K~klks~~~--------------------~e~VvfWkWis-~~~l~lVT-~t 125 (494)
T 1bpo_A 70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWIS-LNTVALVT-DN 125 (494)
T ss_dssp EEEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEEEE-TTEEEEEC-SS
T ss_pred eeeeCCCCc-EEEEec-CCeEEEEchHHhhhhcceec--------------------CCCceEEEecC-CCeEEEEc-CC
Confidence 344567776 555543 58899999999988876332 24566666653 44565553 45
Q ss_pred EEEEEEccCCCcccceeEeccCC----CCEEEEEecCCCCcEEEEEEe------CCCcEEEEeCCCCceeEEeccCCccE
Q 001386 419 IVQLYAYHGGSDARQQLEIDAHV----GNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1088)
Q Consensus 419 ~i~vwd~~~~~~~~~~~~~~~h~----~~v~~~~~s~d~~~l~l~s~s------~d~~i~vwd~~~~~~~~~~~~~~~~v 488 (1088)
.|+-|++.+... +...+..|. ..|..-..+++.+++ +++|- -.|.+.+|..+.+ .-+.++||.+..
T Consensus 126 aVyHWsi~~~s~--P~kvFdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F 201 (494)
T 1bpo_A 126 AVYHWSMEGESQ--PVKMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASF 201 (494)
T ss_dssp EEEEEESSSSCC--CEEEEECCGGGTTCEEEEEEECTTSSEE-EEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEE
T ss_pred eeEEecccCCCC--chhheecchhcccceEEEEEECCCCCeE-EEEeecccCCcccceEEEeecccc-ccchheeeeeee
Confidence 699999976432 222344443 357777889999963 33332 2467889986654 346788888777
Q ss_pred EEEeeeeeCCce-EEEEEecC---CeEEEEECCCC---Cc-----eEEecC----CCCceEEEEEccCCCEEEEEeeCCC
Q 001386 489 YSLCPHAKENIH-FIFSISVD---GKIKAWLYDSL---GA-----RVDYDA----PGLGCTRMAYSANGRRLFSCGTSKE 552 (1088)
Q Consensus 489 ~~~~~~~~~~~~-~l~s~~~d---g~i~iwd~~~~---~~-----~~~~~~----~~~~v~~~~~s~~g~~l~~~~~~~~ 552 (1088)
..+.+...+... .+..+... +.+++-++... .. ...+.. ...-..++..|+.-..++..+.
T Consensus 202 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK--- 278 (494)
T 1bpo_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK--- 278 (494)
T ss_dssp EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET---
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec---
Confidence 666553322222 33334332 78999988643 11 111111 1223457778887777777764
Q ss_pred CceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe
Q 001386 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1088)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1088)
.|.++++|+.++.++..-+-.. ..|...+......-+++....|.|.--.++...
T Consensus 279 -~G~i~lyDleTgt~i~~nrIs~---~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 279 -YGYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp -TSEEEEEETTTCCEEEEEECCS---SCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred -CceEEEEecccceeeeeecccC---CceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 6789999999999987766555 666666666666666666666666555555443
No 309
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.47 E-value=0.00059 Score=81.51 Aligned_cols=234 Identities=9% Similarity=-0.017 Sum_probs=133.4
Q ss_pred CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCC----CceeEEeccCCccEEEE
Q 001386 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT----GSRTYSFEGHGAPVYSL 491 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~----~~~~~~~~~~~~~v~~~ 491 (1088)
..+.|++.++.+.+... +......+..++|.+.+.. ++++-...+.|+.+++.+ ......+.........+
T Consensus 384 ~~~~I~~id~~~~~~~~----~~~~~~~p~gla~d~~~~~-Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gl 458 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL 458 (699)
T ss_dssp CTTC-CEECTTSCCEEC----CSCCCTTCCCCEEETTTTE-EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCE
T ss_pred CccceEEEeCCCCccee----eeccCcceEEEccccccCe-EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceE
Confidence 34568888887765332 1122235678899987764 344445567899999875 22222221111223445
Q ss_pred eeeeeCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEE
Q 001386 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1088)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1088)
++.+. ++.++++-...+.|.+.+++.......+.........++++|.+.+|+.+... ....|..+++.........
T Consensus 459 avD~~-~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~--~~~~I~~~~~dG~~~~~l~ 535 (699)
T 1n7d_A 459 AVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGVDIYSLV 535 (699)
T ss_dssp ECCCS-SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS--SSCCEEBCCSSSCCCCEES
T ss_pred EEEee-CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC--CCCeEEEEeCCCCCeeEEE
Confidence 65432 34455665667889999987655444443333455678999977766654321 1256777776543222222
Q ss_pred eccccccccEEEEEEeCCCCEEEEE-eCCCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEe
Q 001386 572 QGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1088)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 650 (1088)
... ....+.++++|++..|+.+ +..+.|.++++........+...........+++..+ .++++....+.|..++
T Consensus 536 ~~~---l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d 611 (699)
T 1n7d_A 536 TEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSAN 611 (699)
T ss_dssp CSS---CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEE
T ss_pred eCC---CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEE
Confidence 211 1456789999886666554 4667899999865433333322122223456676554 4555556678899999
Q ss_pred CCCCCcccccc
Q 001386 651 TPESNSVDAAG 661 (1088)
Q Consensus 651 ~~~~~~~~~~~ 661 (1088)
..+++.+..+.
T Consensus 612 ~~~G~~~~~i~ 622 (699)
T 1n7d_A 612 RLTGSDVNLLA 622 (699)
T ss_dssp TTTEEEEECCC
T ss_pred ccCCCceEEee
Confidence 87776655544
No 310
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=97.35 E-value=0.00014 Score=57.67 Aligned_cols=35 Identities=34% Similarity=0.569 Sum_probs=32.8
Q ss_pred CCchhHHHHHHHHHhhhhcCcHHHHHHHHHhcCCC
Q 001386 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFY 35 (1088)
Q Consensus 1 ~~~~~~~~~~li~q~L~~~g~~~s~~~L~~Es~~~ 35 (1088)
|+++..||.+||..||+|.||..||-+|+.||++.
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~ 35 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS 35 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence 88999999999999999999999999999999884
No 311
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.35 E-value=0.24 Score=53.05 Aligned_cols=233 Identities=13% Similarity=0.127 Sum_probs=152.9
Q ss_pred eEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-ceeeeeecc
Q 001386 802 PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEG 880 (1088)
Q Consensus 802 ~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~-~~~~~~l~~ 880 (1088)
.+.-++|..+.+|.-...++.|||+++.+.+....-.. .|.--.|-. .+.|+..+ +..|+-|++.. ..+++.+.-
T Consensus 69 dsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~e-~VvfWkWis--~~~l~lVT-~taVyHWsi~~~s~P~kvFdR 144 (494)
T 1bpo_A 69 DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDR 144 (494)
T ss_dssp SEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECSS-CCCEEEEEE--TTEEEEEC-SSEEEEEESSSSCCCEEEEEC
T ss_pred ceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecCC-CceEEEecC--CCeEEEEc-CCeeEEecccCCCCchhheec
Confidence 35678899999988888899999999999888877444 455555553 24555554 56899999974 345566655
Q ss_pred cc----CCeeEEEECCCCCEEEEEeC-------CCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCC----C
Q 001386 881 HS----KRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ----T 945 (1088)
Q Consensus 881 h~----~~V~~l~~s~dg~~las~s~-------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg----~ 945 (1088)
|. ..|..-..++|.++++..|- .|.+.+|..+.+. -+..+||.. .-..+-.+| .
T Consensus 145 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------sQ~ieGhaa-----~F~~~~~~g~~~~~ 213 (494)
T 1bpo_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA-----SFAQFKMEGNAEES 213 (494)
T ss_dssp CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC------EEEECCSEE-----EEEEEECTTCSSEE
T ss_pred chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc------cchheeeee-----eeEEEecCCCCCCc
Confidence 53 46777888999999886542 4778999998743 445566654 122232333 2
Q ss_pred EEEE-Ee----CCeEEEEEcCcc---e------eeeeeecC--CCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceE
Q 001386 946 RFLL-VH----ETHLAIYEAEEL---T------CLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1009 (1088)
Q Consensus 946 ~l~~-~~----d~~i~vwd~~~~---~------~~~~~~~~--h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~ 1009 (1088)
.|.+ +. .+++++-++... . ....+++. ..+-..++..|+.-..+...+.-|.|.+||+.+|.++
T Consensus 214 ~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i 293 (494)
T 1bpo_A 214 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (494)
T ss_dssp EEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceee
Confidence 2333 32 268999998543 1 11111211 2566678888988888888899999999999999998
Q ss_pred EEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001386 1010 CRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1060 (1088)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~ 1060 (1088)
.+-+.. ...+. .-+.+. +..-++.....|.|.--.+.+..
T Consensus 294 ~~nrIs--------~~~iF--~t~~~~-~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 294 YMNRIS--------GETIF--VTAPHE-ATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEEECC--------SSCEE--EEEEET-TTTEEEEEETTCEEEEEEECTTT
T ss_pred eeeccc--------CCceE--EecccC-CCCcEEEEccCceEEEEEEcccc
Confidence 776511 12222 223333 33456666688988877775543
No 312
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.26 E-value=0.013 Score=62.57 Aligned_cols=111 Identities=13% Similarity=0.108 Sum_probs=82.9
Q ss_pred eEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCC----CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee---
Q 001386 802 PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP----SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--- 874 (1088)
Q Consensus 802 ~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~--- 874 (1088)
+-...+.+|..++.+.++.||.-++.....-+.+... ...+..+..+| +|++||..+ +..|.|-.+..+..
T Consensus 24 R~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~ 101 (452)
T 3pbp_A 24 RYIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVE 101 (452)
T ss_dssp EEEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCC
T ss_pred cEEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCc
Confidence 3446677999999999999999998855445555443 23688899999 899999875 55799988873210
Q ss_pred ---------eeeecc------ccCCeeEEEECCC---CCEEEEEeCCCcEEEEEcCCC
Q 001386 875 ---------ISKLEG------HSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDGW 914 (1088)
Q Consensus 875 ---------~~~l~~------h~~~V~~l~~s~d---g~~las~s~Dg~i~iwd~~~~ 914 (1088)
...+.- ...+|..+.|+|- +..|++-..|++|++||+...
T Consensus 102 ~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s 159 (452)
T 3pbp_A 102 DVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNS 159 (452)
T ss_dssp CHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCT
T ss_pred ccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccC
Confidence 112221 2577999999994 468999999999999999873
No 313
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.18 E-value=0.028 Score=58.49 Aligned_cols=166 Identities=7% Similarity=-0.001 Sum_probs=106.8
Q ss_pred cCCeeEEEECCCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeecCCCCc---cCCCCeEEEEE---cCCCCEEEEEe---
Q 001386 882 SKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVM---TLAPSETHIQF---HKDQTRFLLVH--- 951 (1088)
Q Consensus 882 ~~~V~~l~~s~dg~~las~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~f---s~dg~~l~~~~--- 951 (1088)
..--.++.|.+....|..++ ..++|..|+...+..... ...+.. .....+..+.| .|+++++++..
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~----~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV----VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE----CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE----ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 33445788977544544444 789999999986532221 122211 00013579999 68988888643
Q ss_pred -----------CCeEEEEEcC---cceeeeeeec-C-----------CCcCEEEEEEeeCCCEEEEEeCC-CcEEEEEcC
Q 001386 952 -----------ETHLAIYEAE---ELTCLKQWFP-I-----------SSVPISQATFSCDCRMVFTSFVD-GTLSIHEAS 1004 (1088)
Q Consensus 952 -----------d~~i~vwd~~---~~~~~~~~~~-~-----------h~~~v~~l~fs~dg~~l~s~s~d-g~v~vwd~~ 1004 (1088)
+..|..||+. +++.+..... . -......++..++|...++++.- +.|...+..
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 5679999999 7876654321 1 11347899999999999988887 776666655
Q ss_pred CCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001386 1005 NLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1057 (1088)
Q Consensus 1005 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~ 1057 (1088)
.. .+..+.... +.. ....-...|+++| ||++|++...+|.+..+|+.
T Consensus 168 G~-~~~~~~~~~--~~~--~~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 168 GK-TVSTFAWES--GNG--GQRPGYSGITFDP-HSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp SC-CEEEEEECC--CCS--SSCCSCSEEEEET-TTTEEEEESSSSSEEEEECS
T ss_pred CC-EEeeeeecC--CCc--ccccCcceEEEeC-CCCEEEEEcCCCeEEEEcCC
Confidence 33 232222111 111 1123345789999 88888888889999999987
No 314
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.16 E-value=0.036 Score=59.92 Aligned_cols=230 Identities=12% Similarity=0.036 Sum_probs=116.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEe---ccCCCCEEEEEecCC---CCcEEEEEEeCC-----C
Q 001386 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI---DAHVGNVNDLAFSAP---CKQISVITCGDD-----K 465 (1088)
Q Consensus 397 ~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~---~~h~~~v~~~~~s~d---~~~l~l~s~s~d-----~ 465 (1088)
.....++|.|||+++++ ..+|.|.+++ +++ ......+ .........++|+|+ +.. +.++-... +
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~-~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~-lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGR-LSTYAELSVYHRGESGLLGLALHPRFPQEPY-VYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTE-EEEEEECCCCCSTTCSEEEEEECTTTTTSCE-EEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCC-ccEeecceEeecCCCCceeEEECCCCCCCCE-EEEEEecCCCCCcc
Confidence 45779999999996555 5679999998 343 1211111 122356889999998 554 33333322 5
Q ss_pred cEEEEeCCCCce-----e-EEec---cCCccEEEEeeeeeCCceEEEEEec-------------CCeEEEEECCCC----
Q 001386 466 TIKVWDAVTGSR-----T-YSFE---GHGAPVYSLCPHAKENIHFIFSISV-------------DGKIKAWLYDSL---- 519 (1088)
Q Consensus 466 ~i~vwd~~~~~~-----~-~~~~---~~~~~v~~~~~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~---- 519 (1088)
.|..++...+.. + ..+. +.......++| .++|.+.++.+. .|.|.-++.+..
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~--~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~ 183 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAF--GPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG 183 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEE--CTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEE--CCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence 788888765421 1 1132 11112245666 456665555432 245655555430
Q ss_pred ---------CceEEecCCCCceEEEEEcc-CCCEEEEEeeCCCC-----ceeEEEEeCCC--------C--------cee
Q 001386 520 ---------GARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEG-----ESFLVEWNESE--------G--------AIK 568 (1088)
Q Consensus 520 ---------~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~-----~~~i~iwd~~~--------~--------~~~ 568 (1088)
.... +.........++|+| +|+..++-. ..+. ...|.+..... + ..+
T Consensus 184 npf~~~~~~~~~i-~a~G~rnp~g~a~d~~~g~l~v~d~-g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 184 NPFLGRRGARPEV-YSLGHRNPQGLAWHPKTGELFSSEH-GPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp CTTTTCTTSCTTE-EEECCSEECCCEECTTTCCEEEEEE-CC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred CcccCCCCCCccE-EEEcCCCcccEEEECCCCCEEEEEc-CCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence 1111 111112356789999 555444432 2111 01233332111 0 111
Q ss_pred EEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCee------eEEEeCCCCCCCCceEEEecCCCEEEEEeC
Q 001386 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL------LTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1088)
Q Consensus 569 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1088)
..+.. ......++| .+|..+++....+.|...++..... ...+-. ....+..+++.|||.++++...
T Consensus 262 ~~~~~----~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~~ 334 (352)
T 2ism_A 262 YFWPQ----GFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALYVTTSN 334 (352)
T ss_dssp EECTT----CCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEECS
T ss_pred EecCC----CCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEEEEEeC
Confidence 12211 124566777 4566666555667777777654321 122211 1235688999999987766543
No 315
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.01 E-value=0.19 Score=53.27 Aligned_cols=233 Identities=12% Similarity=0.061 Sum_probs=122.1
Q ss_pred CCCeeEEEEecCCCEEEEEe-CCcEEEEEcCCceeE--EEec----CCCCCeEEEEEcCC---CCcEEEEE--eCCCeEE
Q 001386 798 QEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI--LTIM----PPSPTATSLAFNPH---DNNVIAIG--MDDSTIL 865 (1088)
Q Consensus 798 ~~~v~~~~~s~dg~~l~~~~-dg~i~iwd~~~~~~~--~~~~----~~~~~i~~l~~sp~---d~~~lasg--~~dg~i~ 865 (1088)
-.....++|.|||.++++-. .|.|++++..+++.. ..+. ........++|+|+ ++.+.++- ..++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 34578999999999988887 899999987655432 2221 22456789999993 34444432 2455676
Q ss_pred EEEcCCc----------ee-eeeecc-ccCCeeEEEECCCCCEEEEEeC-------------CCcEEEEEcCCCceee--
Q 001386 866 IYNARSS----------EV-ISKLEG-HSKRVTGLVFSDALNILVSSGG-------------DAQIFVWDVDGWGIQT-- 918 (1088)
Q Consensus 866 lwd~~~~----------~~-~~~l~~-h~~~V~~l~~s~dg~~las~s~-------------Dg~i~iwd~~~~~~~~-- 918 (1088)
-|.+..+ +. +..+.. .......|+|.|||.+.++.+. .|.|.-.+.+.. ...
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~-ip~~n 189 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE-PAPGN 189 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS-BCTTC
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC-ccCCC
Confidence 6766541 11 122321 1122467999999988887653 233333333321 000
Q ss_pred ----eeeeecCCCCccCCCCeEEEEEcCCCCEEEE--EeCCeEEEEEcCccee------------------eeeeecCCC
Q 001386 919 ----CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTC------------------LKQWFPISS 974 (1088)
Q Consensus 919 ----~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~--~~d~~i~vwd~~~~~~------------------~~~~~~~h~ 974 (1088)
...+. .++. ....++|+|+|.+.++ +.++.-.|--+..|.. +..+. .+.
T Consensus 190 Pf~~~~i~a--~G~R----Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~-~~~ 262 (347)
T 3das_A 190 PFPGSPVYS--YGHR----NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWS-TDE 262 (347)
T ss_dssp SSTTCCEEE--BCCS----BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEEC-TTT
T ss_pred CCCCCeEEe--eCCC----CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecC-CCC
Confidence 00111 1222 2578999999988887 3443323332232221 11111 111
Q ss_pred cCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEe
Q 001386 975 VPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1046 (1088)
Q Consensus 975 ~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~ 1046 (1088)
.....++|. +|..++..-..+.|....+..+...... ...+. +..-++..|+..| ||.++++..
T Consensus 263 ~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~--e~~l~----~~~gR~~dv~~~p-DG~lyv~td 326 (347)
T 3das_A 263 ASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADP--QAFLE----GEYGRLRTVAPAG-GDKLWLVTS 326 (347)
T ss_dssp CCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCC--EEEST----TTSSCEEEEEEEE-TTEEEEEEC
T ss_pred CCCcceEEE-cCceeeccccCCEEEEEEecCCceecce--EEeec----CCCCCccEEEECC-CCcEEEEEc
Confidence 356677776 4555555545556655566544321100 00111 1112456677777 666655543
No 316
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.98 E-value=0.051 Score=57.54 Aligned_cols=231 Identities=10% Similarity=0.018 Sum_probs=122.6
Q ss_pred CEEEEEe---CCcEEEEEcCCceeEE--EecCCCCCeEEEEEcCCCCcEEEEEeCC----CeEEEEEcCCcee--eeeec
Q 001386 811 AYLFSAS---GGVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYNARSSEV--ISKLE 879 (1088)
Q Consensus 811 ~~l~~~~---dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~~d----g~i~lwd~~~~~~--~~~l~ 879 (1088)
.+++.|+ ...+.+||..+.+=.. .+........++.+ ++++++.|+.+ ..+.+||..+.+- +..+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 3445554 3569999998755322 22222222223332 56788888765 6789999988643 33332
Q ss_pred cccCCeeEEEECCCCCEEEEEeCC------CcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-e-
Q 001386 880 GHSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H- 951 (1088)
Q Consensus 880 ~h~~~V~~l~~s~dg~~las~s~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~- 951 (1088)
.....-..+.+ ++++++.|+.+ ..+.+||..+.+-.....+. ... ..+.+..-++++++.+ .
T Consensus 90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r------~~~~~~~~~~~iyv~GG~~ 159 (306)
T 3ii7_A 90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSML--TQR------CSHGMVEANGLIYVCGGSL 159 (306)
T ss_dssp SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCS--SCC------BSCEEEEETTEEEEECCEE
T ss_pred ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCc--CCc------ceeEEEEECCEEEEECCCC
Confidence 22222222233 67777877765 45889999886533322111 111 1112222366666663 2
Q ss_pred --------CCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCC-----CcEEEEEcCCCceEEEecccccc
Q 001386 952 --------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYL 1018 (1088)
Q Consensus 952 --------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~d-----g~v~vwd~~~~~~~~~~~~~~~~ 1018 (1088)
-..+.+||..+.+-........ ......+..-+++.++.|+.+ ..+.+||..+......- .+
T Consensus 160 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~----~~ 234 (306)
T 3ii7_A 160 GNNVSGRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVS----PM 234 (306)
T ss_dssp SCTTTCEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECC----CC
T ss_pred CCCCcccccceEEEeCCCCCeEEECCCccc-hhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECC----CC
Confidence 3458899998775332211111 111112222377777777654 46889999888654321 12
Q ss_pred CCCCccccccceEEEECCCCCCEEEEEeCC-----CcEEEEeCCCCCCCccccCC
Q 001386 1019 RPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-----GEVYVIEPNEPGDTWAVLPP 1068 (1088)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~p~d~~~l~~~~~d-----g~v~~w~l~~~~~~~~~~~~ 1068 (1088)
+.. +....++.. ++.+++.|+.+ ..+.+||+.. .+|...++
T Consensus 235 p~~----r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~--~~W~~~~~ 280 (306)
T 3ii7_A 235 PWK----GVTVKCAAV---GSIVYVLAGFQGVGRLGHILEYNTET--DKWVANSK 280 (306)
T ss_dssp SCC----BSCCEEEEE---TTEEEEEECBCSSSBCCEEEEEETTT--TEEEEEEE
T ss_pred CCC----ccceeEEEE---CCEEEEEeCcCCCeeeeeEEEEcCCC--CeEEeCCC
Confidence 211 111222223 46888888865 4677888744 55876543
No 317
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.93 E-value=0.23 Score=52.99 Aligned_cols=180 Identities=12% Similarity=0.081 Sum_probs=103.7
Q ss_pred CCCeEEEEEcCC--ceee-eeecc-----ccCCeeEEEECC--CCC-EEEEEe-C--CCcEEEEEcCCCceeeeeeeecC
Q 001386 860 DDSTILIYNARS--SEVI-SKLEG-----HSKRVTGLVFSD--ALN-ILVSSG-G--DAQIFVWDVDGWGIQTCRSLQTP 925 (1088)
Q Consensus 860 ~dg~i~lwd~~~--~~~~-~~l~~-----h~~~V~~l~~s~--dg~-~las~s-~--Dg~i~iwd~~~~~~~~~~~~~~~ 925 (1088)
.+|.|.++|..+ ++.. ..+.+ .......+.+.+ ++. +|..+. . +.+|.+|+++.+... ...+...
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~-~~~~~~~ 159 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKS-LLHLKTI 159 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTE-EEEEEEE
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCE-EEEEecc
Confidence 689999999874 2211 12222 234567777755 454 344442 2 567888888764322 2333344
Q ss_pred CCCccCCCCeEEEEEcCCCCEEEEEe----C--------------CeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCC
Q 001386 926 DGVMTLAPSETHIQFHKDQTRFLLVH----E--------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR 987 (1088)
Q Consensus 926 ~~~~~~~~~v~~~~fs~dg~~l~~~~----d--------------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~ 987 (1088)
.+... .....+++.++|++.++.. | +.|+-+|. +++. ... ..-.....++||||++
T Consensus 160 ~g~~~--~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~-~~~-~~l~~pNGia~spDg~ 233 (355)
T 3sre_A 160 RHKLL--PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVR-VVA-EGFDFANGINISPDGK 233 (355)
T ss_dssp CCTTC--SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCE-EEE-EEESSEEEEEECTTSS
T ss_pred ccCCC--CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEE-Eee-cCCcccCcceECCCCC
Confidence 43322 3688999999999888742 1 34545554 3322 212 2235678899999999
Q ss_pred EEEEEe-CCCcEEEEEcCC-CceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCC-CcEEEEe
Q 001386 988 MVFTSF-VDGTLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-GEVYVIE 1055 (1088)
Q Consensus 988 ~l~s~s-~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~d-g~v~~w~ 1055 (1088)
.|+++. ..+.|..|++.. |.+.. .... ..+ -.|-.++.++++|++.+++..+ +.|..|+
T Consensus 234 ~lYvadt~~~~I~~~~~~~~g~l~~-~~~~-~~~-------g~PDGi~vD~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 234 YVYIAELLAHKIHVYEKHANWTLTP-LRVL-SFD-------TLVDNISVDPVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEE-EEEE-ECS-------SEEEEEEECTTTCCEEEEEESCHHHHHSCC
T ss_pred EEEEEeCCCCeEEEEEECCCCcEec-CEEE-eCC-------CCCceEEEeCCCCcEEEEecCCceEEEEEC
Confidence 877665 568899999864 43321 1111 111 2344577887338888767644 3444443
No 318
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.92 E-value=0.044 Score=57.91 Aligned_cols=235 Identities=11% Similarity=0.012 Sum_probs=118.5
Q ss_pred CCCEEEEEe-CC-----CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCC-----CcEEEEeCCCC
Q 001386 407 DGSLLGVAY-SK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTG 475 (1088)
Q Consensus 407 dg~~las~~-~d-----g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d-----~~i~vwd~~~~ 475 (1088)
++..++.|+ .+ ..+.+||..+++-.. ...+.........+ ..+++ +++.|+.+ ..+.+||+.++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~--~~~~~--l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSITRKRRYVASV--SLHDR--IYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCSSCCBSCEEE--EETTE--EEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCChhhccccEE--EECCE--EEEEcCCCCCccCceEEEEECCCC
Confidence 455666666 32 358889988764211 11111111111122 23455 56666654 46899998887
Q ss_pred c---eeEE--eccCCccEEEEeeeeeCCceEEEEEecCC-----eEEEEECCCCCceEEecCCCCceEEEEEccCCCEEE
Q 001386 476 S---RTYS--FEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 545 (1088)
Q Consensus 476 ~---~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 545 (1088)
+ -... +......-..+.+ ++.+++.|+.++ .+.+||..+.+-...-..+.......+..-+++.++
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv 164 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATTL----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYC 164 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEE
T ss_pred CCCeeEECCCCCCCccceeEEEE----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEE
Confidence 6 3221 1111111122222 456777776543 578888876543322221211111112223677767
Q ss_pred EEeeCCC-CceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCCeeeEEEeCC
Q 001386 546 SCGTSKE-GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAG 619 (1088)
Q Consensus 546 ~~~~~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~ 619 (1088)
.++.++. ....+.+||+.+.+-...-.... .......+.+ ++..++.|+.+ ..+.+||..+.+....-...
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 241 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMAT-KRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT 241 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred ECCCCCCcccceEEEEeCCCCcEEeCCCCCc-ccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence 6664332 13458899998876544322111 1111222222 45666666653 46899999887755443222
Q ss_pred CCCCCCceEEEecCCCEEEEEeCC-----CcEEEEeCCCCC
Q 001386 620 GGLPENPRICFNKNGTLLAVIANE-----NRIKILETPESN 655 (1088)
Q Consensus 620 ~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 655 (1088)
.. .....+..-++++++.|+.+ ..+.+||..+.+
T Consensus 242 ~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 242 TP--RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp SC--CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred Cc--ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 11 12222333467777777755 356778877653
No 319
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.88 E-value=0.28 Score=52.88 Aligned_cols=237 Identities=8% Similarity=-0.033 Sum_probs=119.0
Q ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeE----eccCCCCEEEEEecCC---CCcEEEEEEeC------
Q 001386 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE----IDAHVGNVNDLAFSAP---CKQISVITCGD------ 463 (1088)
Q Consensus 397 ~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~----~~~h~~~v~~~~~s~d---~~~l~l~s~s~------ 463 (1088)
.....|+|.|||+.|.++...|.|++++... .....+.. ..........++|+|+ +..+++.....
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 3578899999999344556789999998543 21111111 1122346789999996 55433332221
Q ss_pred CCcEEEEeCCCC--ce--eEE-ecc------CCccEEEEeeeeeCCceEEEEEec-------------CCeEEEEECCCC
Q 001386 464 DKTIKVWDAVTG--SR--TYS-FEG------HGAPVYSLCPHAKENIHFIFSISV-------------DGKIKAWLYDSL 519 (1088)
Q Consensus 464 d~~i~vwd~~~~--~~--~~~-~~~------~~~~v~~~~~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~ 519 (1088)
...|..|++..+ .. ... +.. ....-..++| .+||.+.++.+. .|.|.-++.+..
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~--~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVF--DGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEE--CSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEE--CCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 235666666533 11 111 111 0111245667 456755555433 245666665532
Q ss_pred C------------ceEEecCCCCceEEEEEcc-CCCEEEEEeeCCCCceeEEEEe--------CCCC-------------
Q 001386 520 G------------ARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWN--------ESEG------------- 565 (1088)
Q Consensus 520 ~------------~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd--------~~~~------------- 565 (1088)
- ....+.........++|+| +|++.++ -...++...|.+.. ...+
T Consensus 175 ~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~-d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~ 253 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN-EHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK 253 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE-EECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred CCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE-ecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence 0 1111111223467899999 5554443 32221112232211 0000
Q ss_pred --------ceeEEEeccccccccEEEEEEeC-------CCCEEEEEeCCCcEEEEEcCCCeeeEEEeCC-CCCCCCceEE
Q 001386 566 --------AIKRTYQGLQLQHNSVSVVHFDT-------AKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-GGLPENPRIC 629 (1088)
Q Consensus 566 --------~~~~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~ 629 (1088)
..+..+.. ......+.|.. ++.++++....+.|...++..++.......- .....+..++
T Consensus 254 ~~~~~~~~~P~~~~~~----~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~ 329 (353)
T 2g8s_A 254 GEIVAGTEQPVFYWKD----SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVR 329 (353)
T ss_dssp BSSCTTSCCCSEEESS----CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEE
T ss_pred CCCCCCccCCeEEeCC----CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEE
Confidence 00111111 12466677763 4666666667788888887766544332211 1122578899
Q ss_pred EecCCCEEEEEe
Q 001386 630 FNKNGTLLAVIA 641 (1088)
Q Consensus 630 ~s~~~~~l~~~~ 641 (1088)
+.|||.++++..
T Consensus 330 ~~pdG~lyv~td 341 (353)
T 2g8s_A 330 TGPDGYLYVLTD 341 (353)
T ss_dssp ECTTSCEEEEEC
T ss_pred ECCCCcEEEEEe
Confidence 999998666543
No 320
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.87 E-value=0.33 Score=52.31 Aligned_cols=233 Identities=8% Similarity=-0.064 Sum_probs=120.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceeEe---ccCCCCEEEEEecCC---CCcEEEEEEeC---C--
Q 001386 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI---DAHVGNVNDLAFSAP---CKQISVITCGD---D-- 464 (1088)
Q Consensus 396 ~~~V~~l~~s~dg~~las~~~dg~i~vwd~~~~~~~~~~~~~---~~h~~~v~~~~~s~d---~~~l~l~s~s~---d-- 464 (1088)
-.....++|.|||+++++ ..+|.|+++| .+++ ..+..+ .........++|+|+ +.. +.++-+. +
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lyv~~~~~~~~~~ 102 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSW-VYLYASYFAEGGH 102 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCE-EEEEEEEECGGGC
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCc--eEeeccceeecCCCceeeEEeCCCCCcCCE-EEEEEeccCCCCC
Confidence 345788999999985554 5669999887 3443 222121 122356889999998 553 3333321 3
Q ss_pred --CcEEEEeCCCC--c-----ee-EEecc-CCccEEEEeeeeeCCceEEEEEec-------------CCeEEEEECCCC-
Q 001386 465 --KTIKVWDAVTG--S-----RT-YSFEG-HGAPVYSLCPHAKENIHFIFSISV-------------DGKIKAWLYDSL- 519 (1088)
Q Consensus 465 --~~i~vwd~~~~--~-----~~-~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~- 519 (1088)
..|..|+...+ . .+ ..+.. .......++| .+||.+.++.+. .|.|..++.+..
T Consensus 103 ~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~--~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~ 180 (354)
T 3a9g_A 103 IRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRF--GPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRP 180 (354)
T ss_dssp EEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEE--CTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCC
T ss_pred cceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEE--CCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCC
Confidence 56777876654 1 11 11221 1112345666 456766665432 245555554422
Q ss_pred -------CceEEecCCCCceEEEEEcc-CCCEEEEEeeCCCCceeEEEEeCCC--------C--------ceeEEEeccc
Q 001386 520 -------GARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESE--------G--------AIKRTYQGLQ 575 (1088)
Q Consensus 520 -------~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd~~~--------~--------~~~~~~~~~~ 575 (1088)
........ -.....++|+| +|+..++-.. .+.-..|.+..... + ..+..+...
T Consensus 181 p~~npf~~~~i~a~G-~rnp~Gla~d~~~g~l~v~d~g-~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~- 257 (354)
T 3a9g_A 181 PADNPFPNSPIWSYG-HRNPQGIDWHRASGVMVATEHG-PVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSE- 257 (354)
T ss_dssp CTTSSSTTCCEEEEC-CSCCCEEEECTTTCCEEEEECC-SSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTC-
T ss_pred CCCCCCCCCcEEEEc-cCCcceEEEeCCCCCEEEEecC-CCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCC-
Confidence 11111111 12345789999 5665544322 22112233332110 0 111122001
Q ss_pred cccccEEEEEEe-------CCCCEEEEEeCCCcEEEEEcCCC-eee--EEEeCCCCCCCCceEEEecCCCEEEEEe
Q 001386 576 LQHNSVSVVHFD-------TAKDQILAAGDDHVIKIWDMNKV-QLL--TTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1088)
Q Consensus 576 ~~~~~v~~~~~~-------~~~~~l~~~s~dg~i~iwd~~~~-~~~--~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1088)
......++|. .+|.++++....+.|...++... +.. ..+.. .....+..+++.|||.+.++..
T Consensus 258 --~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~-~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 258 --TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK-NVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp --CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT-TTSCCEEEEEECTTSCEEEEEC
T ss_pred --CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeecc-CCCCCeeEEEECCCCcEEEEEe
Confidence 1356777883 46666666666778888888753 332 22221 1123578899999997766654
No 321
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.86 E-value=0.051 Score=57.39 Aligned_cols=196 Identities=9% Similarity=-0.030 Sum_probs=98.5
Q ss_pred CCCEEEEEeCC-----CEEEEEEccCCCc--ccceeEeccCCCCEEEEEecCCCCcEEEEEEeCC-----CcEEEEeCCC
Q 001386 407 DGSLLGVAYSK-----HIVQLYAYHGGSD--ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVT 474 (1088)
Q Consensus 407 dg~~las~~~d-----g~i~vwd~~~~~~--~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d-----~~i~vwd~~~ 474 (1088)
+++.++.|+.+ ..+.+||..+++. ......+......-..+.+ +++ +++.|+.+ ..+.+||+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDM--IYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTE--EEEECCBCSSCBCCEEEEEETTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCE--EEEEcccCCCcccceEEEEcCCC
Confidence 57777777754 3589999988651 1111111111111122222 455 56666643 3588899887
Q ss_pred CceeE--EeccCCccEEEEeeeeeCCceEEEEEecC-----CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001386 475 GSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1088)
Q Consensus 475 ~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 547 (1088)
.+-.. .+......-..+.+ ++.+++.|+.+ ..+.+||+.+..-...-..+.......+..-+++.++.+
T Consensus 138 ~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G 213 (301)
T 2vpj_A 138 DQWSMLGDMQTAREGAGLVVA----SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVG 213 (301)
T ss_dssp TEEEEEEECSSCCBSCEEEEE----TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred CeEEECCCCCCCcccceEEEE----CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEe
Confidence 65432 22211111112222 55677777765 358888887654332211111111111222366666776
Q ss_pred eeCCCC-ceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCCeee
Q 001386 548 GTSKEG-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLL 613 (1088)
Q Consensus 548 ~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~ 613 (1088)
+.+... ...+.+||+.+.+-...-.... .......+.+ ++..++.|+.+ ..+.+||..+.+..
T Consensus 214 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 214 GFDGTAHLSSVEAYNIRTDSWTTVTSMTT-PRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp CBCSSSBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred CCCCCcccceEEEEeCCCCcEEECCCCCC-cccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 654322 3468999998876544322111 1112222222 55666666654 35677887765543
No 322
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.82 E-value=0.17 Score=53.43 Aligned_cols=236 Identities=10% Similarity=-0.045 Sum_probs=117.9
Q ss_pred eEEEEEccc--CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCC----CEEE
Q 001386 348 TLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK----HIVQ 421 (1088)
Q Consensus 348 ~lla~g~~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~d----g~i~ 421 (1088)
.+++.|+.+ ..+.+||..+++-..... +......-.++.+ +++.++.|+.+ ..+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~-----------------~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~ 73 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRC-----------------PFEKRRDAACVFW--DNVVYILGGSQLFPIKRMD 73 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCC-----------------CSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEE
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCC-----------------CCcccceeEEEEE--CCEEEEEeCCCCCCcceEE
Confidence 467777653 568888888765332110 1111122222332 67777787754 5688
Q ss_pred EEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCC------CcEEEEeCCCCceeEE--eccCCccEEEEee
Q 001386 422 LYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAVTGSRTYS--FEGHGAPVYSLCP 493 (1088)
Q Consensus 422 vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d------~~i~vwd~~~~~~~~~--~~~~~~~v~~~~~ 493 (1088)
+||..+++-.. ...+.........+.+ +++ +++.|+.+ ..+.+||+.+.+-... +......-..+.+
T Consensus 74 ~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 148 (306)
T 3ii7_A 74 CYNVVKDSWYS-KLGPPTPRDSLAACAA--EGK--IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA 148 (306)
T ss_dssp EEETTTTEEEE-EECCSSCCBSCEEEEE--TTE--EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred EEeCCCCeEEE-CCCCCccccceeEEEE--CCE--EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE
Confidence 99988764211 1111111111122222 555 56666654 4588999887754322 1111111112221
Q ss_pred eeeCCceEEEEEec---------CCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCC-ceeEEEEeCC
Q 001386 494 HAKENIHFIFSISV---------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG-ESFLVEWNES 563 (1088)
Q Consensus 494 ~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~-~~~i~iwd~~ 563 (1088)
++.+++.|+. -..+.+||+.+..-...-..........+..-+++.++.++.+... ...+.+||+.
T Consensus 149 ----~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~ 224 (306)
T 3ii7_A 149 ----NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIK 224 (306)
T ss_dssp ----TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETT
T ss_pred ----CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCC
Confidence 4566666654 3447888887664332221111111111222366666666643321 2458899998
Q ss_pred CCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCCeeeE
Q 001386 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLT 614 (1088)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~ 614 (1088)
+.+-...-. .........++.+ ++..++.|+.+ ..+.+||..+.+...
T Consensus 225 ~~~W~~~~~-~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~ 277 (306)
T 3ii7_A 225 LNEWKMVSP-MPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWVA 277 (306)
T ss_dssp TTEEEECCC-CSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred CCcEEECCC-CCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence 875433211 1111122223333 56677777743 568889988866544
No 323
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.82 E-value=0.13 Score=54.28 Aligned_cols=232 Identities=9% Similarity=0.040 Sum_probs=121.6
Q ss_pred CCCEEEEEe-C----CcEEEEEcCCceeEEE--ecCCCCCeEEEEEcCCCCcEEEEEeCCC-----eEEEEEcCCcee--
Q 001386 809 NDAYLFSAS-G----GVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEV-- 874 (1088)
Q Consensus 809 dg~~l~~~~-d----g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~i~lwd~~~~~~-- 874 (1088)
++.+++.|+ + ..+.+||..+.+-... +...... .+++.. ++++++.|+.++ .+.+||..+.+-
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~ 91 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCR-AGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS 91 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccccc-ceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceee
Confidence 344555554 2 4588999887653222 1111111 122222 567888887653 688999887642
Q ss_pred eeeeccccCCeeEEEECCCCCEEEEEeCCC-----cEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE
Q 001386 875 ISKLEGHSKRVTGLVFSDALNILVSSGGDA-----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 949 (1088)
Q Consensus 875 ~~~l~~h~~~V~~l~~s~dg~~las~s~Dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~ 949 (1088)
+..+......-..+.+ ++++++.|+.++ .+.+||+.+.+-.....+. .... ...+..-+++.++.
T Consensus 92 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~------~~~~~~~~~~iyv~ 161 (302)
T 2xn4_A 92 VANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMN--TRRS------SVGVGVVGGLLYAV 161 (302)
T ss_dssp ECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCS--SCCB------SCEEEEETTEEEEE
T ss_pred CCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCC--Cccc------CceEEEECCEEEEE
Confidence 2222222222222233 677788887653 4778888876533322111 1111 11122236666666
Q ss_pred E-e-------CCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCC-----CcEEEEEcCCCceEEEecccc
Q 001386 950 V-H-------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTA 1016 (1088)
Q Consensus 950 ~-~-------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~d-----g~v~vwd~~~~~~~~~~~~~~ 1016 (1088)
+ . -..+.+||..+.+-...........-.+ +...+++.++.|+.+ ..+.+||..+......-.
T Consensus 162 GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~--- 237 (302)
T 2xn4_A 162 GGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAG-VGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD--- 237 (302)
T ss_dssp CCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCE-EEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC---
T ss_pred eCCCCCCCccccEEEEEeCCCCcEEECCCCcccccccc-EEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC---
Confidence 3 2 2358899988765332211111111111 223377788888764 368899998886543221
Q ss_pred ccCCCCccccccceEEEECCCCCCEEEEEeCCC-----cEEEEeCCCCCCCccccC
Q 001386 1017 YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLP 1067 (1088)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg-----~v~~w~l~~~~~~~~~~~ 1067 (1088)
.+.. +.. .+++.. ++.+++.|+.++ .+.+||+.. .+|...+
T Consensus 238 -~~~~----r~~-~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~--~~W~~~~ 283 (302)
T 2xn4_A 238 -MNMC----RRN-AGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTT--DKWTVVS 283 (302)
T ss_dssp -CSSC----CBS-CEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT--TEEEECS
T ss_pred -CCCc----ccc-CeEEEE--CCEEEEECCcCCCcccccEEEEcCCC--CeEEECC
Confidence 1111 111 122222 468888888764 488888854 4687654
No 324
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.79 E-value=0.38 Score=53.75 Aligned_cols=104 Identities=13% Similarity=0.114 Sum_probs=64.0
Q ss_pred CCeeEEEEecCCCEEEEEeCC-cEEEEEcCCceeE--EEecC------CCCCeEEEEEcCC---CCcEEEEEeC------
Q 001386 799 EAVPCFALSKNDAYLFSASGG-VISLYIVMTFKTI--LTIMP------PSPTATSLAFNPH---DNNVIAIGMD------ 860 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~dg-~i~iwd~~~~~~~--~~~~~------~~~~i~~l~~sp~---d~~~lasg~~------ 860 (1088)
.....++|.|+|+++++-..+ .|.+++..+++.. ..+.. .......|+|+|+ ++.+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 356799999999988887654 6888876555432 22321 2356779999994 4444444332
Q ss_pred ------CCeEEEEEcCCc-------eee-eeecc-ccCCeeEEEECCCCCEEEEEeC
Q 001386 861 ------DSTILIYNARSS-------EVI-SKLEG-HSKRVTGLVFSDALNILVSSGG 902 (1088)
Q Consensus 861 ------dg~i~lwd~~~~-------~~~-~~l~~-h~~~V~~l~~s~dg~~las~s~ 902 (1088)
...|.-|+...+ +.+ ..+.. .......|+|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665321 112 12222 1224688999999998887664
No 325
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.75 E-value=0.11 Score=54.73 Aligned_cols=234 Identities=12% Similarity=0.044 Sum_probs=116.0
Q ss_pred CCEEEEEeCC----CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCC-----CcEEEEeCCCCcee
Q 001386 408 GSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTGSRT 478 (1088)
Q Consensus 408 g~~las~~~d----g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d-----~~i~vwd~~~~~~~ 478 (1088)
+..++.|+.+ ..+..||+.+++- .....+......-..+.+ ++. +++.|+.+ ..+.+||+.+.+-.
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERW-HQVAELPSRRCRAGMVYM--AGL--VFAVGGFNGSLRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTE--EEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcE-eEcccCCcccccceEEEE--CCE--EEEEeCcCCCccccceEEECCCCCcee
Confidence 4455555533 3478888887642 111111111111112222 455 56666654 35888998876533
Q ss_pred EE--eccCCccEEEEeeeeeCCceEEEEEecCC-----eEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCC
Q 001386 479 YS--FEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1088)
Q Consensus 479 ~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 551 (1088)
.. +......-..+.+ ++.+++.|+.++ .+.+||+.+.+-...-..+.......+..-+++.++.++.+.
T Consensus 91 ~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 166 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDV 166 (302)
T ss_dssp EECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEET
T ss_pred eCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCC
Confidence 22 1111111122222 456777777654 477788776543322111111111112223666667666543
Q ss_pred CC---ceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCCeeeEEEeCCCCCC
Q 001386 552 EG---ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLP 623 (1088)
Q Consensus 552 ~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~ 623 (1088)
.. ...+.+||+.+.+-...-.... .......+.+ ++..++.|+.+ ..+.+||..+.+....-.....
T Consensus 167 ~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-- 241 (302)
T 2xn4_A 167 ASRQCLSTVECYNATTNEWTYIAEMST-RRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-- 241 (302)
T ss_dssp TTTEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC--
T ss_pred CCCccccEEEEEeCCCCcEEECCCCcc-ccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc--
Confidence 32 3458899998876544322111 1112222222 55666666654 4688999988765543322211
Q ss_pred CCceEEEecCCCEEEEEeCCC-----cEEEEeCCCCC
Q 001386 624 ENPRICFNKNGTLLAVIANEN-----RIKILETPESN 655 (1088)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg-----~i~iwd~~~~~ 655 (1088)
.....+..-++++++.|+.++ .+.+||..+.+
T Consensus 242 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 242 RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 112223334677788877553 47888887653
No 326
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.71 E-value=0.15 Score=54.09 Aligned_cols=229 Identities=11% Similarity=0.087 Sum_probs=119.5
Q ss_pred CCcEEEEEcCCceeEE-EecCCCCCeEEEEEcCCCCcEEEEEeC-----C------CeEEEEEcCCcee--eeeeccccC
Q 001386 818 GGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMD-----D------STILIYNARSSEV--ISKLEGHSK 883 (1088)
Q Consensus 818 dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~sp~d~~~lasg~~-----d------g~i~lwd~~~~~~--~~~l~~h~~ 883 (1088)
...+.+||..+.+=.. .+..+.......+... ++++++.|+. . ..+.+||..+.+- +..+.....
T Consensus 12 G~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 90 (315)
T 4asc_A 12 EEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC 90 (315)
T ss_dssp TTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred CCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence 3678999998766332 2222223333333344 6778888874 1 1378899887653 222221111
Q ss_pred CeeEEEECCCCCEEEEEeCC--------CcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-e-C-
Q 001386 884 RVTGLVFSDALNILVSSGGD--------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-E- 952 (1088)
Q Consensus 884 ~V~~l~~s~dg~~las~s~D--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~-d- 952 (1088)
.-..+.+ ++++++.|+.+ ..+.+||..+.+-.....+ +... ..+.+...+++.++.| . +
T Consensus 91 ~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~--p~~r------~~~~~~~~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 91 LFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL--PYVV------YGHTVLSHMDLVYVIGGKGSD 160 (315)
T ss_dssp SCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCC--SSCC------BSCEEEEETTEEEEECCBCTT
T ss_pred ceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCC--CCcc------cceeEEEECCEEEEEeCCCCC
Confidence 1122222 56777777632 3588999988653322211 1111 1122333566666664 3 2
Q ss_pred ----CeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCC-----cEEEEEcCCCceEEEeccccccCCCCc
Q 001386 953 ----THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG-----TLSIHEASNLEVQCRILSTAYLRPTTS 1023 (1088)
Q Consensus 953 ----~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg-----~v~vwd~~~~~~~~~~~~~~~~~~~~~ 1023 (1088)
+.+.+||..+.+-....... .......+..-+++.++.|+.++ .+.+||..+......-. .+..
T Consensus 161 ~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~-- 233 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWKELAPMQ-TARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA----FPQE-- 233 (315)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCS-SCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC----CSSC--
T ss_pred CcccceEEEEeCCCCeEEECCCCC-CchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCC----CCCc--
Confidence 36899998876532221111 11111112233778888887654 58889998886543211 1211
Q ss_pred cccccceEEEECCCCCCEEEEEeCCC--------------cEEEEeCCCCCCCccccCCCCc
Q 001386 1024 CLHVYPHAIAAHPLKPTQFAVGLTNG--------------EVYVIEPNEPGDTWAVLPPDEI 1071 (1088)
Q Consensus 1024 ~~~~~~~~~~~~p~d~~~l~~~~~dg--------------~v~~w~l~~~~~~~~~~~~~~~ 1071 (1088)
+....++.+ ++.+++.|+.++ .+.+||+. ..+|...+|.++
T Consensus 234 --r~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~--~~~W~~~~~~~r 288 (315)
T 4asc_A 234 --RSSLSLVSL---VGTLYAIGGFATLETESGELVPTELNDIWRYNEE--EKKWEGVLREIA 288 (315)
T ss_dssp --CBSCEEEEE---TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETT--TTEEEEEESCSS
T ss_pred --ccceeEEEE---CCEEEEECCccccCcCCccccccccCcEEEecCC--CChhhhhccCCc
Confidence 111122222 358888888743 35667764 456987655543
No 327
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.65 E-value=0.019 Score=55.27 Aligned_cols=185 Identities=8% Similarity=0.002 Sum_probs=97.4
Q ss_pred CCcEEEEEeCCCeEEEEEcCCcee-----eeeeccc--cCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceee----e
Q 001386 851 DNNVIAIGMDDSTILIYNARSSEV-----ISKLEGH--SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT----C 919 (1088)
Q Consensus 851 d~~~lasg~~dg~i~lwd~~~~~~-----~~~l~~h--~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~----~ 919 (1088)
.+.+|+...+| +|+.=...++.. ..+-.++ =..+..++|+|+|.+.+. .+|.+.--+..+..... .
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence 34567777777 666655554431 1111122 236789999999987666 56754444433211100 0
Q ss_pred eeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceeee-----eee-cCCCcCEEEEEEeeCCCEEEEEe
Q 001386 920 RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK-----QWF-PISSVPISQATFSCDCRMVFTSF 993 (1088)
Q Consensus 920 ~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~~-----~~~-~~h~~~v~~l~fs~dg~~l~s~s 993 (1088)
..+-. .+.. ....+.|.|+|.+.++ .|+.|+-++-.+..... ... ..--..+..|.|.|+|.+.++.
T Consensus 80 t~IG~-~Gw~----~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~- 152 (236)
T 1tl2_A 80 KKIGN-GGWN----QFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH- 152 (236)
T ss_dssp EEEEC-SCGG----GCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-
T ss_pred cEecc-cccc----cceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-
Confidence 01100 0111 1368999999999999 78999888764322111 101 1112567999999999877766
Q ss_pred CCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEE
Q 001386 994 VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVY 1052 (1088)
Q Consensus 994 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~ 1052 (1088)
|+.+.-+.-.++.....+.....+. ..+.+++.. +.|.| ++.+.++. +|.++
T Consensus 153 -dg~lyr~~~P~~~~~~wl~~~~~~g--~~g~~~yr~-l~f~~-~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 153 -GQQFYKALPPVSNQDNWLARATKIG--QGGWDTFKF-LFFSS-VGTLFGVQ--GGKFY 204 (236)
T ss_dssp -TTEEEEECCCSSTTCCHHHHCEEEE--SSSGGGEEE-EEECT-TSCEEEEE--TTEEE
T ss_pred -CCcEEecCCCCCCCcccccccceec--cCCcceEEE-EEECC-CCcEEEEe--CCeEE
Confidence 7775433333222111110000001 012334444 44888 67766655 77443
No 328
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.016 Score=61.24 Aligned_cols=201 Identities=9% Similarity=0.018 Sum_probs=112.3
Q ss_pred cEEEEEeCCCeEEEEEcCCceeeeeeccc-cCCeeEEEE--CC-CCCEEEEE-eCCCcEEEEEcCCCceeeeeeeecCCC
Q 001386 853 NVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVF--SD-ALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDG 927 (1088)
Q Consensus 853 ~~lasg~~dg~i~lwd~~~~~~~~~l~~h-~~~V~~l~~--s~-dg~~las~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~ 927 (1088)
.++++++.||.|+-.|..+|+.+..++.. ..++....- .+ ++..++.. +.||.|..++..+|...-...+..+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47888999999999999999999888754 122222110 01 23333333 589999999988875332111111111
Q ss_pred CccCCCCeEE---EEE------cCCCCEEEEEeCCeEEEEEcCcceeeeeeecCCCcC------EEEEEEe-----eCCC
Q 001386 928 VMTLAPSETH---IQF------HKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVP------ISQATFS-----CDCR 987 (1088)
Q Consensus 928 ~~~~~~~v~~---~~f------s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~------v~~l~fs-----~dg~ 987 (1088)
.. ++.. ..+ +.+|..++.+.++++...|+.+|+.+.++..+.... ..|.... ..+.
T Consensus 91 ~S----P~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 91 TS----PLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp TC----SEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CC
T ss_pred cc----ccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCC
Confidence 00 1111 001 245555555889999999999999998876543211 1111111 1245
Q ss_pred EEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCCc
Q 001386 988 MVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1063 (1088)
Q Consensus 988 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~~~~ 1063 (1088)
.|+.+..+..+.+.+ .+|+ +.......+.+....+. +.. ....+. |+.. ++++.||.|..+|.......|
T Consensus 167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~-~~~-~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVP-LAL-QNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHH-HHT-TCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred eEEEecceEEEEEEC-CCCC-eEEEecccccccccccc-ccc-cccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence 677788888888777 5564 43333222222221100 000 000112 4454 568899999999998888889
No 329
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.61 E-value=0.98 Score=48.05 Aligned_cols=207 Identities=11% Similarity=0.049 Sum_probs=115.3
Q ss_pred CeEEEEECCCCCEEEEEe------------CCCEEEEEEccCCCc-ccceeEecc-----CCCCEEEEEecC--CCCcEE
Q 001386 398 SVNRVVWSPDGSLLGVAY------------SKHIVQLYAYHGGSD-ARQQLEIDA-----HVGNVNDLAFSA--PCKQIS 457 (1088)
Q Consensus 398 ~V~~l~~s~dg~~las~~------------~dg~i~vwd~~~~~~-~~~~~~~~~-----h~~~v~~~~~s~--d~~~l~ 457 (1088)
..-.++..|+|..+++++ .+|.|.++|.++... ...+ .+.+ .......+.+.+ ++...+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 445567788876665552 689999999984321 2222 2333 234667777765 454213
Q ss_pred EEEEeC--CCcEEEEeCCCCc-e---eEEeccC-CccEEEEeeeeeCCceEEEEEe-----------------cCCeEEE
Q 001386 458 VITCGD--DKTIKVWDAVTGS-R---TYSFEGH-GAPVYSLCPHAKENIHFIFSIS-----------------VDGKIKA 513 (1088)
Q Consensus 458 l~s~s~--d~~i~vwd~~~~~-~---~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~-----------------~dg~i~i 513 (1088)
+++-.. +.+|.+|++..+. . +.++.+. -...+.+.+. ++|.+.++.. ..|.|..
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~--~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV--GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE--ETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEe--CCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 333332 5678888766532 2 2334432 2346777774 4666666654 1244544
Q ss_pred EECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC-Ccee--EEEeccccccccEEEEEEeC-C
Q 001386 514 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIK--RTYQGLQLQHNSVSVVHFDT-A 589 (1088)
Q Consensus 514 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~-~~~~--~~~~~~~~~~~~v~~~~~~~-~ 589 (1088)
+|. .+... ....-...+.++||||++.|+++.. ....|+.|++.. ++.. +.+. . .+....+++.+ +
T Consensus 208 ~d~--~~~~~-~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~~-~---~g~PDGi~vD~e~ 277 (355)
T 3sre_A 208 YSP--NDVRV-VAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLS-F---DTLVDNISVDPVT 277 (355)
T ss_dssp ECT--TCCEE-EEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEE-C---SSEEEEEEECTTT
T ss_pred EEC--CeEEE-eecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEEe-C---CCCCceEEEeCCC
Confidence 543 33222 2222234578999999999988763 245688888753 3322 2331 1 25678889998 5
Q ss_pred CCEEEEEeCC-CcEEEEEcC--CCeeeEEEe
Q 001386 590 KDQILAAGDD-HVIKIWDMN--KVQLLTTID 617 (1088)
Q Consensus 590 ~~~l~~~s~d-g~i~iwd~~--~~~~~~~~~ 617 (1088)
|+..+++..+ +.|..|+.. .+..+..+.
T Consensus 278 G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 278 GDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp CCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred CcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 8877766533 344444443 244444444
No 330
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.50 E-value=0.16 Score=54.42 Aligned_cols=165 Identities=10% Similarity=0.022 Sum_probs=101.0
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceee-----
Q 001386 892 DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL----- 966 (1088)
Q Consensus 892 ~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~----- 966 (1088)
.+|..++.+ .++.||.-++..... -+.+.... +. ....|..+..||+|++||..++..|.|-.+..+...
T Consensus 30 ~n~t~i~~a-~~n~iR~~~i~~~~~--Yk~L~~~~-~i-~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 30 QNGTRIVFI-QDNIIRWYNVLTDSL--YHSLNFSR-HL-VLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp TTTTEEEEE-ETTEEEEEETTTCSS--CEEEECTT-TC-CCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHH
T ss_pred cCCCEEEEE-ECCEEEEEECCCCCc--ceEEecCc-cc-ccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccc
Confidence 345555544 346677667664221 11222221 00 001477899999999999999999999998843211
Q ss_pred -------eeeecC-----CCcCEEEEEEee---CCCEEEEEeCCCcEEEEEcCCCceEEE-eccc-cccCCCCccccccc
Q 001386 967 -------KQWFPI-----SSVPISQATFSC---DCRMVFTSFVDGTLSIHEASNLEVQCR-ILST-AYLRPTTSCLHVYP 1029 (1088)
Q Consensus 967 -------~~~~~~-----h~~~v~~l~fs~---dg~~l~s~s~dg~v~vwd~~~~~~~~~-~~~~-~~~~~~~~~~~~~~ 1029 (1088)
+.+..+ ...+|..+.|-| .|..|++-..|++|++||+........ +... ..+... ....-.
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d--~~~~ev 182 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLD--ARVNDI 182 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESC--SSCCCE
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCC--cccceE
Confidence 112211 257799999988 567899999999999999997432222 1100 011111 111334
Q ss_pred eEEEECCCCCCEEEEEe--CCCcEEEEeCCCCCCCccc
Q 001386 1030 HAIAAHPLKPTQFAVGL--TNGEVYVIEPNEPGDTWAV 1065 (1088)
Q Consensus 1030 ~~~~~~p~d~~~l~~~~--~dg~v~~w~l~~~~~~~~~ 1065 (1088)
.+++|.+ ++-+|-+.+ ..|.|+-.-+--+. +|+.
T Consensus 183 ~S~~Fg~-~~lTLYvl~~t~~GDIYAlcP~LP~-~~~~ 218 (452)
T 3pbp_A 183 TDLEFSK-DGLTLYCLNTTEGGDIFAFYPFLPS-VLLL 218 (452)
T ss_dssp EEEEECT-TSSCEEEEECTTSCEEEEESSCCCS-EEEC
T ss_pred EEEEEcC-CCcEEEEEecCCCCCEEEECCCCcc-cccc
Confidence 6789998 778787755 78888887775544 4543
No 331
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.47 E-value=0.13 Score=54.37 Aligned_cols=233 Identities=10% Similarity=0.067 Sum_probs=122.0
Q ss_pred ecCCCEEEEEe-C----CcEEEEEcCCceeEEE--ecCCCCCeEEEEEcCCCCcEEEEEeC----C-----CeEEEEEcC
Q 001386 807 SKNDAYLFSAS-G----GVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMD----D-----STILIYNAR 870 (1088)
Q Consensus 807 s~dg~~l~~~~-d----g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~----d-----g~i~lwd~~ 870 (1088)
.-++.+++.|+ + ..+.+||..+.+-... +....... +++.. ++++++.|+. + ..+.+||..
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE--TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE--CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence 34666777665 2 4589999887653222 11111111 22222 5678887776 2 368899988
Q ss_pred Ccee--eeeeccccCCeeEEEECCCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCC
Q 001386 871 SSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 943 (1088)
Q Consensus 871 ~~~~--~~~l~~h~~~V~~l~~s~dg~~las~s~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~d 943 (1088)
+.+- +..+......-..+.+ ++++++.|+.+ ..+.+||..+.+-.....+. .... .-..+.+ +
T Consensus 99 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p--~~r~----~~~~~~~--~ 168 (308)
T 1zgk_A 99 TNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML--TRRI----GVGVAVL--N 168 (308)
T ss_dssp TTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCS--SCCB----SCEEEEE--T
T ss_pred CCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCC--cccc----ceEEEEE--C
Confidence 7642 2222222222222333 67777777643 35888998876533322111 1111 1122222 6
Q ss_pred CCEEEEE-eC-----CeEEEEEcCcceeeeeeecCC-CcCEEEEEEeeCCCEEEEEeCC-----CcEEEEEcCCCceEEE
Q 001386 944 QTRFLLV-HE-----THLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCR 1011 (1088)
Q Consensus 944 g~~l~~~-~d-----~~i~vwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~s~s~d-----g~v~vwd~~~~~~~~~ 1011 (1088)
+++++.+ .+ +.+.+||..+.+-........ ......+ .-+++.++.|+.+ ..+.+||+.+......
T Consensus 169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 246 (308)
T 1zgk_A 169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVC--VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFV 246 (308)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEE--EECCEEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence 6666664 22 458999988765332211111 1111222 2377777777765 5689999998865432
Q ss_pred eccccccCCCCccccccceEEEECCCCCCEEEEEeCCC-----cEEEEeCCCCCCCccccC
Q 001386 1012 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLP 1067 (1088)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg-----~v~~w~l~~~~~~~~~~~ 1067 (1088)
- .++.. +. ..+++.. ++.+++.|+.++ .+.+||+.. .+|...+
T Consensus 247 ~----~~p~~----r~-~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~--~~W~~~~ 294 (308)
T 1zgk_A 247 A----PMKHR----RS-ALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDT--DTWSEVT 294 (308)
T ss_dssp C----CCSSC----CB-SCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTT--TEEEEEE
T ss_pred C----CCCCC----cc-ceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCC--CEEeecC
Confidence 1 11111 11 1222222 468888888653 577888754 5687553
No 332
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.36 E-value=0.19 Score=53.30 Aligned_cols=230 Identities=9% Similarity=-0.027 Sum_probs=113.5
Q ss_pred EEEEeCCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeC-----C------CcEEEEeCCCCceeE
Q 001386 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----D------KTIKVWDAVTGSRTY 479 (1088)
Q Consensus 411 las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~-----d------~~i~vwd~~~~~~~~ 479 (1088)
++.|+ ..+.+||..+++-.. ..+..........+...+++ +++.|+. . ..+.+||+.+++-..
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~ 81 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG 81 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred EEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence 44454 568999998875221 22222222333333445566 5566663 1 127788988765322
Q ss_pred EeccCCccEE--EEeeeeeCCceEEEEEecC--------CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEee
Q 001386 480 SFEGHGAPVY--SLCPHAKENIHFIFSISVD--------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1088)
Q Consensus 480 ~~~~~~~~v~--~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 549 (1088)
+..-..+-. +++. . ++.+++.|+.+ ..+.+||..+.+-...-..+.......+..-+++.++.++.
T Consensus 82 -~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 157 (315)
T 4asc_A 82 -MPPLPSPRCLFGLGE--A-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGK 157 (315)
T ss_dssp -CCCBSSCEESCEEEE--E-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCB
T ss_pred -CCCCCcchhceeEEE--E-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCC
Confidence 111111111 1111 1 45667777643 34888888765422211111111112222346666666664
Q ss_pred CC--CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCCeeeEEEeCCCCC
Q 001386 550 SK--EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTIDAGGGL 622 (1088)
Q Consensus 550 ~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~~~~~~~~~~ 622 (1088)
.. .....+.+||+.+.+-...-.... ......++.+ ++..++.|+.++ .+.+||..+.+....-.....
T Consensus 158 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~- 233 (315)
T 4asc_A 158 GSDRKCLNKMCVYDPKKFEWKELAPMQT-ARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE- 233 (315)
T ss_dssp CTTSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC-
T ss_pred CCCCcccceEEEEeCCCCeEEECCCCCC-chhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc-
Confidence 21 112458999998775433221111 1111222222 566667776544 588899988765544322211
Q ss_pred CCCceEEEecCCCEEEEEeCCC--------------cEEEEeCCCCC
Q 001386 623 PENPRICFNKNGTLLAVIANEN--------------RIKILETPESN 655 (1088)
Q Consensus 623 ~~v~~v~~s~~~~~l~~~~~dg--------------~i~iwd~~~~~ 655 (1088)
.....+..-++++++.|+.++ .+.+||..+.+
T Consensus 234 -r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 234 -RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp -CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred -ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 122222333677777777532 36677877653
No 333
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.34 E-value=0.17 Score=62.56 Aligned_cols=233 Identities=13% Similarity=0.119 Sum_probs=141.8
Q ss_pred EEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-ceeeeeeccc
Q 001386 803 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEGH 881 (1088)
Q Consensus 803 ~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~-~~~~~~l~~h 881 (1088)
+.-++|..+.+|.-.+.++.|||+++.+.+....-+ ..|.--.|-. .+.|+..+ +..|+-|++.. ..++..+.-|
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~~-e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~ 145 (1630)
T 1xi4_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (1630)
T ss_pred hhccCCCcceEEEecCCeEEEeehHHhhhhcccccC-CCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence 456788888888888888999999988777766633 3555556654 34555444 56799999964 3454555545
Q ss_pred ----cCCeeEEEECCCCCEEEEEeC-------CCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEc--C-CCCEE
Q 001386 882 ----SKRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH--K-DQTRF 947 (1088)
Q Consensus 882 ----~~~V~~l~~s~dg~~las~s~-------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs--~-dg~~l 947 (1088)
...|..-..+++.++++..|- .|.+.+|.++.+ .-+..+||.. ....+.+. + ....+
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~------~sQ~iegha~---~F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK------VSQPIEGHAA---SFAQFKMEGNAEESTLF 216 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc------cchhhhHhHh---hhheeccCCCCCCceEE
Confidence 456778888999999886553 478899988863 3344556543 11112211 1 12222
Q ss_pred EEEe----CCeEEEEEcCcc---ee------eeeeecC--CCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEe
Q 001386 948 LLVH----ETHLAIYEAEEL---TC------LKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1012 (1088)
Q Consensus 948 ~~~~----d~~i~vwd~~~~---~~------~~~~~~~--h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~ 1012 (1088)
+.+. .++++|-++... .. ...+++. ...-..++..|+.-..+...+.-|.|.++|+.||.++..-
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence 2232 267888887543 11 1111111 1444556777777777888889999999999999987654
Q ss_pred ccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Q 001386 1013 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1059 (1088)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~ 1059 (1088)
+.. +..+.. .+.+. ...-++.....|.|.--.+.+.
T Consensus 297 ris--------~~~iF~--~~~~~-~~~g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 297 RIS--------GETIFV--TAPHE-ATAGIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred ccc--------CCceEE--eccCC-CCCceEEEcCCceEEEEEEccc
Confidence 411 111221 12232 2233555557777777666543
No 334
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.16 E-value=0.068 Score=51.50 Aligned_cols=144 Identities=9% Similarity=0.010 Sum_probs=84.4
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee------eeee--ccccCCeeEEEECCCCCEEEEEeCCCcEEEEEc
Q 001386 840 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV------ISKL--EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 911 (1088)
Q Consensus 840 ~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~------~~~l--~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~ 911 (1088)
..++.++|+| ++.+.++ .+|.++-.+..+... -..+ .+... -.++.|.|+|.+.++ .||.|.-++-
T Consensus 41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred ccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 3667999999 8887777 778777777655221 1111 01112 478999999998887 5687776665
Q ss_pred CCCceeeee--eeecCC-CCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCcceee-----eee-ecCCCcCEEEEEE
Q 001386 912 DGWGIQTCR--SLQTPD-GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL-----KQW-FPISSVPISQATF 982 (1088)
Q Consensus 912 ~~~~~~~~~--~~~~~~-~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd~~~~~~~-----~~~-~~~h~~~v~~l~f 982 (1088)
.+....... -..+.. +-. .+..+.|.|+|.+.++. |+.++-+...++... ... ........+.+.|
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw~----~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f 189 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGWS----GFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFF 189 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSGG----GEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEE
T ss_pred CcCCCCceeccccEeccCCCC----ceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEE
Confidence 332211110 000001 111 47899999999999999 888654443322211 111 1122334455778
Q ss_pred eeCCCEEEEEeCCC
Q 001386 983 SCDCRMVFTSFVDG 996 (1088)
Q Consensus 983 s~dg~~l~s~s~dg 996 (1088)
+++|...++. +|
T Consensus 190 ~~~G~l~~v~--~g 201 (236)
T 1tl2_A 190 SSVGTLFGVQ--GG 201 (236)
T ss_dssp CTTSCEEEEE--TT
T ss_pred CCCCcEEEEe--CC
Confidence 8888776655 66
No 335
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.07 E-value=0.34 Score=52.45 Aligned_cols=237 Identities=12% Similarity=0.072 Sum_probs=115.9
Q ss_pred cCCCEEEEEe--CCcEEEEEcCC----ceeEEEec-CCCCCeEEEEEcCCCCcEEEEEeC-C---------CeEEEEEcC
Q 001386 808 KNDAYLFSAS--GGVISLYIVMT----FKTILTIM-PPSPTATSLAFNPHDNNVIAIGMD-D---------STILIYNAR 870 (1088)
Q Consensus 808 ~dg~~l~~~~--dg~i~iwd~~~----~~~~~~~~-~~~~~i~~l~~sp~d~~~lasg~~-d---------g~i~lwd~~ 870 (1088)
-++++++.|+ ...+.+||..+ ++.+..+. .....-.++.+ ++++++.|+. + ..+.+||+.
T Consensus 18 ~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~ 94 (357)
T 2uvk_A 18 DNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPK 94 (357)
T ss_dssp ETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETT
T ss_pred ECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCC
Confidence 3677777775 45799999863 23332222 11112222333 5678887776 2 478999998
Q ss_pred Ccee--eeeec-cccCCeeEEEECCCCCEEEEEeCC---------------------------------------CcEEE
Q 001386 871 SSEV--ISKLE-GHSKRVTGLVFSDALNILVSSGGD---------------------------------------AQIFV 908 (1088)
Q Consensus 871 ~~~~--~~~l~-~h~~~V~~l~~s~dg~~las~s~D---------------------------------------g~i~i 908 (1088)
+.+- +..+. .....-.++. .++++++.|+.+ ..+.+
T Consensus 95 ~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (357)
T 2uvk_A 95 TNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLS 172 (357)
T ss_dssp TTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEE
T ss_pred CCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEE
Confidence 7642 22222 1111112222 577888888865 46889
Q ss_pred EEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEE-e------CCeEEEEEc--Cccee--eeeeecCCCcCE
Q 001386 909 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H------ETHLAIYEA--EELTC--LKQWFPISSVPI 977 (1088)
Q Consensus 909 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~-~------d~~i~vwd~--~~~~~--~~~~~~~h~~~v 977 (1088)
||..+.+-.....+.... .. -.+++. -++++++.+ . ...+..||+ .+.+- +... .......
T Consensus 173 yd~~~~~W~~~~~~p~~~-~~-----~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~-~~~~~~~ 244 (357)
T 2uvk_A 173 FDPSTQQWSYAGESPWYG-TA-----GAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPV-SSPDGVA 244 (357)
T ss_dssp EETTTTEEEEEEECSSCC-CB-----SCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCS-STTTCCB
T ss_pred EeCCCCcEEECCCCCCCC-cc-----cccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCC-CCCcccc
Confidence 999886533322211111 00 012222 356666663 2 235777876 43332 2111 1111111
Q ss_pred EEEEEeeCCCEEEEEeCC----------------------CcEEEEEcCCCceEEEeccccccCCCCccccccceEEEEC
Q 001386 978 SQATFSCDCRMVFTSFVD----------------------GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAH 1035 (1088)
Q Consensus 978 ~~l~fs~dg~~l~s~s~d----------------------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1035 (1088)
...+...+++.++.|+.+ ..+.+||+.+.+....- .++.. +....++.+
T Consensus 245 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~----~~p~~----r~~~~~~~~- 315 (357)
T 2uvk_A 245 GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSG----ELSQG----RAYGVSLPW- 315 (357)
T ss_dssp SCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEE----ECSSC----CBSSEEEEE-
T ss_pred cceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCC----CCCCC----cccceeEEe-
Confidence 222334577777777632 25788999887654321 12221 111222332
Q ss_pred CCCCCEEEEEeCCC------cEEEEeCCCCCCCccccCCCC
Q 001386 1036 PLKPTQFAVGLTNG------EVYVIEPNEPGDTWAVLPPDE 1070 (1088)
Q Consensus 1036 p~d~~~l~~~~~dg------~v~~w~l~~~~~~~~~~~~~~ 1070 (1088)
++.+++.||.++ .|.++++ ...+|....|-+
T Consensus 316 --~~~i~v~GG~~~~~~~~~~v~~l~~--~~~~~~~~~~~~ 352 (357)
T 2uvk_A 316 --NNSLLIIGGETAGGKAVTDSVLITV--KDNKVTVQNLEH 352 (357)
T ss_dssp --TTEEEEEEEECGGGCEEEEEEEEEC---CCSCEEEC---
T ss_pred --CCEEEEEeeeCCCCCEeeeEEEEEE--cCcEeEeeeccc
Confidence 468899999764 3444455 456677666654
No 336
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.98 E-value=2 Score=45.40 Aligned_cols=100 Identities=11% Similarity=0.123 Sum_probs=59.1
Q ss_pred CeeEEEEecCCCEEEEEe--CCcEEEEEcCCcee------------------EEEecCCCCCeEEEEEcCCCCcEEEEEe
Q 001386 800 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKT------------------ILTIMPPSPTATSLAFNPHDNNVIAIGM 859 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~--dg~i~iwd~~~~~~------------------~~~~~~~~~~i~~l~~sp~d~~~lasg~ 859 (1088)
....++|.|+|.+.++-. ++.-.|--+..+.. +..+..+......++|.. +.++...-
T Consensus 203 Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~--g~~~~~~l 280 (347)
T 3das_A 203 NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE--GSVWMAGL 280 (347)
T ss_dssp BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET--TEEEEEES
T ss_pred CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc--Cceeeccc
Confidence 345789999888776553 33222322222211 122222223567788874 56666666
Q ss_pred CCCeEEEEEcCCcee----eeeeccccCCeeEEEECCCCCEEEEEe
Q 001386 860 DDSTILIYNARSSEV----ISKLEGHSKRVTGLVFSDALNILVSSG 901 (1088)
Q Consensus 860 ~dg~i~lwd~~~~~~----~~~l~~h~~~V~~l~~s~dg~~las~s 901 (1088)
..+.|....+..... ...+.+..+++..|+..|||.++++.+
T Consensus 281 ~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 281 RGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 666777777765432 223445557899999999998777654
No 337
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.98 E-value=0.21 Score=52.80 Aligned_cols=234 Identities=7% Similarity=-0.023 Sum_probs=115.4
Q ss_pred CCCCEEEEEeCC----CEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeC----C-----CcEEEEeC
Q 001386 406 PDGSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----D-----KTIKVWDA 472 (1088)
Q Consensus 406 ~dg~~las~~~d----g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~----d-----~~i~vwd~ 472 (1088)
-++..++.|+.+ ..+.+||..+++-.. ...+......-..+. .+++ +++.|+. + ..+.+||+
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLR-LADLQVPRSGLAGCV--VGGL--LYAVGGRNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEEE--ETTE--EEEECCEEEETTEEEECCCEEEEET
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeE-CCCCCcccccceEEE--ECCE--EEEECCCcCCCCCCeecceEEEECC
Confidence 356777777632 358899988764221 111111111111222 2444 5555654 2 46888998
Q ss_pred CCCceeE--EeccCCccEEEEeeeeeCCceEEEEEecC-----CeEEEEECCCCCceEEecCCCC--ceEEEEEccCCCE
Q 001386 473 VTGSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGL--GCTRMAYSANGRR 543 (1088)
Q Consensus 473 ~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~g~~ 543 (1088)
.+.+-.. .+......-..+.+ ++.+++.|+.+ ..+.+||..+.+-......+.. ....+. -+++.
T Consensus 98 ~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i 171 (308)
T 1zgk_A 98 MTNQWSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV--LNRLL 171 (308)
T ss_dssp TTTEEEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEE
T ss_pred CCCeEeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE--ECCEE
Confidence 8765322 11111111122222 45677776644 3577888776543222111111 112222 26666
Q ss_pred EEEEeeCCCC-ceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCCeeeEEEe
Q 001386 544 LFSCGTSKEG-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTID 617 (1088)
Q Consensus 544 l~~~~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~ 617 (1088)
++.++.+... ...+.+||+.+.+-...-.... .......+.+ ++..++.|+.+ ..+.+||+.+.+....-.
T Consensus 172 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 248 (308)
T 1zgk_A 172 YAVGGFDGTNRLNSAECYYPERNEWRMITAMNT-IRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP 248 (308)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC
T ss_pred EEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCC-ccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCC
Confidence 6666654322 3458899988775443221111 1112222222 55666666654 568999998876544322
Q ss_pred CCCCCCCCceEEEecCCCEEEEEeCC-----CcEEEEeCCCCC
Q 001386 618 AGGGLPENPRICFNKNGTLLAVIANE-----NRIKILETPESN 655 (1088)
Q Consensus 618 ~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 655 (1088)
.... .....+..-++++++.|+.+ ..+.+||..+.+
T Consensus 249 ~p~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 249 MKHR--RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp CSSC--CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCCC--ccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 2111 11222222367777777643 356778877653
No 338
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.74 E-value=1.1 Score=47.24 Aligned_cols=237 Identities=10% Similarity=0.002 Sum_probs=109.9
Q ss_pred EEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeC----CC------
Q 001386 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS----KH------ 418 (1088)
Q Consensus 349 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~----dg------ 418 (1088)
+++.|+. .+..||..+++-... . +......-...+...+++.++.|+. ++
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~-~-----------------~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~ 77 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLT-A-----------------LAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQ 77 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEE-E-----------------ECTTSCSSEEEEECSSSCEEEEESSCC-------CCC
T ss_pred hhhcccc--ceEEECCCCCceecc-c-----------------CCccCCccceEEEEECCEEEEECCcccCccccCCCcc
Confidence 5666663 478888887763320 0 1111111223334457888888873 12
Q ss_pred -EEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCC-------CcEEEEeCCCCceeEEeccCCccEEE
Q 001386 419 -IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-------KTIKVWDAVTGSRTYSFEGHGAPVYS 490 (1088)
Q Consensus 419 -~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d-------~~i~vwd~~~~~~~~~~~~~~~~v~~ 490 (1088)
.+.+||..+++-.. ...+.........+.+ +++ +++.|+.+ ..+.+||+.+.+-...- ....+...
T Consensus 78 ~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~ 151 (318)
T 2woz_A 78 SYFFQLDNVSSEWVG-LPPLPSARCLFGLGEV--DDK--IYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK-NLPIKVYG 151 (318)
T ss_dssp BEEEEEETTTTEEEE-CSCBSSCBCSCEEEEE--TTE--EEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC-CCSSCEES
T ss_pred ccEEEEeCCCCcEEE-CCCCCccccccceEEE--CCE--EEEEcCccCCCCcccceEEEEeCCCCCEeECC-CCCCcccc
Confidence 27778887654211 1111111111122222 444 45555543 35788898876543221 11111111
Q ss_pred EeeeeeCCceEEEEEecC------CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCC-ceeEEEEeCC
Q 001386 491 LCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG-ESFLVEWNES 563 (1088)
Q Consensus 491 ~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~-~~~i~iwd~~ 563 (1088)
.+.. .-++.+++.|+.+ ..+.+||+.+..-...-..+.......+..-+++.++.++.+..+ ...+.+||+.
T Consensus 152 ~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~ 230 (318)
T 2woz_A 152 HNVI-SHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLK 230 (318)
T ss_dssp CEEE-EETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETT
T ss_pred cEEE-EECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECC
Confidence 0111 1255666776642 348888887654322211111111111122366777777654321 2457889988
Q ss_pred CCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC--------------CcEEEEEcCCCeeeEE
Q 001386 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD--------------HVIKIWDMNKVQLLTT 615 (1088)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d--------------g~i~iwd~~~~~~~~~ 615 (1088)
+.+-...-.... .......+. .++..++.|+.+ ..+.+||..+.+....
T Consensus 231 ~~~W~~~~~~p~-~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 231 TNKWEVMTEFPQ-ERSSISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp TCCEEECCCCSS-CCBSCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred CCeEEECCCCCC-cccceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 776443221111 111112222 245566666543 3466777766655443
No 339
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.70 E-value=0.78 Score=48.51 Aligned_cols=224 Identities=10% Similarity=0.005 Sum_probs=107.8
Q ss_pred EEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeC----CC-------cEEEEeCCCCceeEE--eccCC
Q 001386 419 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----DK-------TIKVWDAVTGSRTYS--FEGHG 485 (1088)
Q Consensus 419 ~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~----d~-------~i~vwd~~~~~~~~~--~~~~~ 485 (1088)
.+..||..+++-.. ..+..........+...++. +++.|+. ++ .+.++|..+++-... +....
T Consensus 25 ~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 100 (318)
T 2woz_A 25 AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR 100 (318)
T ss_dssp EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCB
T ss_pred ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccc
Confidence 37889988775322 12221112222333345565 5666662 11 177888877654321 11111
Q ss_pred ccEEEEeeeeeCCceEEEEEecC-------CeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCC--Ccee
Q 001386 486 APVYSLCPHAKENIHFIFSISVD-------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE--GESF 556 (1088)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~--~~~~ 556 (1088)
..-..+.+ ++.+++.|+.+ ..+.+||..+.+-...-..+.......+...+++.++.++.... ....
T Consensus 101 ~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 176 (318)
T 2woz_A 101 CLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNR 176 (318)
T ss_dssp CSCEEEEE----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCC
T ss_pred cccceEEE----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccce
Confidence 11111211 45677777764 24777887665433221112111111222256666676664221 1345
Q ss_pred EEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCCeeeEEEeCCCCCCCCceEEEe
Q 001386 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1088)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1088)
+.+||+.+.+-...-.... ......++. -++..++.|+.+ ..+.+||..+.+....-..... .....+..
T Consensus 177 ~~~yd~~~~~W~~~~~~p~-~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~ 251 (318)
T 2woz_A 177 VFIYNPKKGDWKDLAPMKT-PRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--RSSISLVS 251 (318)
T ss_dssp EEEEETTTTEEEEECCCSS-CCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--CBSCEEEE
T ss_pred EEEEcCCCCEEEECCCCCC-CcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--ccceEEEE
Confidence 8999998876543322111 111122222 255666666643 3477899887664433221111 11222233
Q ss_pred cCCCEEEEEeCC--------------CcEEEEeCCCCC
Q 001386 632 KNGTLLAVIANE--------------NRIKILETPESN 655 (1088)
Q Consensus 632 ~~~~~l~~~~~d--------------g~i~iwd~~~~~ 655 (1088)
-++++++.|+.+ ..+.+||..+.+
T Consensus 252 ~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 252 LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 466777777653 346677776653
No 340
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.58 E-value=0.48 Score=58.82 Aligned_cols=236 Identities=11% Similarity=0.101 Sum_probs=135.3
Q ss_pred eecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEeCCCEE
Q 001386 341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 420 (1088)
Q Consensus 341 ~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~~dg~i 420 (1088)
-.+|..+ ++|.=. ..++.|+|+++.+.+..+. -..+|..=.|-.+ +.|+..+ +..|
T Consensus 72 IMnP~~~-iiALra-g~~lQiFnl~~k~klks~~--------------------~~e~VvfWkWis~-~~l~lVT-~~aV 127 (1630)
T 1xi4_A 72 IMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISL-NTVALVT-DNAV 127 (1630)
T ss_pred ccCCCcc-eEEEec-CCeEEEeehHHhhhhcccc--------------------cCCCceEEEecCC-CeeEEEc-CCeE
Confidence 3466666 566543 5889999999988776533 1245666677644 4455443 4459
Q ss_pred EEEEccCCCcccceeEeccC----CCCEEEEEecCCCCcEEEEEEe------CCCcEEEEeCCCCceeEEeccCCccEEE
Q 001386 421 QLYAYHGGSDARQQLEIDAH----VGNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPVYS 490 (1088)
Q Consensus 421 ~vwd~~~~~~~~~~~~~~~h----~~~v~~~~~s~d~~~l~l~s~s------~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 490 (1088)
.-|++.+.... ...+..| ...|..-.-+++.+++ +++|= -.|.+.+|..+.+. .+.+.||.+....
T Consensus 128 yHW~~~~~s~P--~k~fdR~~~L~~~QIinY~~d~~~kW~-~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~ 203 (1630)
T 1xi4_A 128 YHWSMEGESQP--VKMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQ 203 (1630)
T ss_pred EEeccCCCCcc--HHHHhcchhcccCeeEEeeeCCCCCeE-EEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhhe
Confidence 99999753321 1123334 3467777888999863 33332 35778889866543 3456677665554
Q ss_pred EeeeeeCCceEEEE-Eec---CCeEEEEECCCC---CceE-----E--ecC--CCCceEEEEEccCCCEEEEEeeCCCCc
Q 001386 491 LCPHAKENIHFIFS-ISV---DGKIKAWLYDSL---GARV-----D--YDA--PGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1088)
Q Consensus 491 ~~~~~~~~~~~l~s-~~~---dg~i~iwd~~~~---~~~~-----~--~~~--~~~~v~~~~~s~~g~~l~~~~~~~~~~ 554 (1088)
+.+...+....+++ +.. .+.+++-++... .... . +.. ...-..++..|+.-..+...+. .
T Consensus 204 ~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk----~ 279 (1630)
T 1xi4_A 204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----Y 279 (1630)
T ss_pred eccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec----C
Confidence 44432222222333 222 268888888543 1111 0 111 1122345666776666666653 6
Q ss_pred eeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe
Q 001386 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1088)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1088)
|.+.++|+.||.++..-+-.. ..|...+......-+++....|.|.--.+....
T Consensus 280 G~~~~~d~~t~~~i~~~ris~---~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 280 GYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred ceEEEEecccchhhhhccccC---CceEEeccCCCCCceEEEcCCceEEEEEEccch
Confidence 779999999998876555333 455555554444455555566665555554433
No 341
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.49 E-value=0.96 Score=50.41 Aligned_cols=110 Identities=14% Similarity=0.147 Sum_probs=62.7
Q ss_pred CCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCC--ccCCCCeEEEEEcCC---CCEEEE--Ee----
Q 001386 883 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV--MTLAPSETHIQFHKD---QTRFLL--VH---- 951 (1088)
Q Consensus 883 ~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~fs~d---g~~l~~--~~---- 951 (1088)
.....|+|.|||+++++-...+.|++++..++..... ....... .........++|+|| +.+|.+ +.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~--~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTV--FQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE--EECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEE--ecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 3467999999999888654445688887655443221 1111111 011245789999995 554444 22
Q ss_pred --------CCeEEEEEcCcc-------eeeee-eecCCCcCEEEEEEeeCCCEEEEEeC
Q 001386 952 --------ETHLAIYEAEEL-------TCLKQ-WFPISSVPISQATFSCDCRMVFTSFV 994 (1088)
Q Consensus 952 --------d~~i~vwd~~~~-------~~~~~-~~~~h~~~v~~l~fs~dg~~l~s~s~ 994 (1088)
...|.-|+...+ +.+.. +..........++|.|||.+.++.+.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 134666655322 12221 11122345789999999987776553
No 342
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=95.47 E-value=0.011 Score=46.63 Aligned_cols=55 Identities=18% Similarity=0.376 Sum_probs=43.0
Q ss_pred hHHHHHHHHHhhhhcCcHHHHHHHHHhcCCChh--HHHHHHHhcCccHHHHHHhhcc
Q 001386 5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD--MKFFEDMILDGKWEDVEQYLSS 59 (1088)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Es~~~~~--~~~~~~~i~~g~w~~~~~~l~~ 59 (1088)
++|+.+-|++||..+||.+++.+|.+|.+++.+ ...=....|+=+|..++.+-.+
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKK 66 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK 66 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHH
Confidence 578999999999999999999999999998864 2223456667777777666443
No 343
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.44 E-value=4.2 Score=45.13 Aligned_cols=114 Identities=16% Similarity=0.105 Sum_probs=78.8
Q ss_pred CCeeEEEEecCCCEEEEEe--CCcEEEEEcCCcee-------------EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCe
Q 001386 799 EAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKT-------------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDST 863 (1088)
Q Consensus 799 ~~v~~~~~s~dg~~l~~~~--dg~i~iwd~~~~~~-------------~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~ 863 (1088)
...-.+.++|||++++++. +.++.++|+..... ..... ..-.....+|.+ +|....+-.-|..
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSq 400 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQ 400 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecce
Confidence 3445688999999999987 78899999874211 11222 334567899999 7877777779999
Q ss_pred EEEEEcCCc----------eeeeeeccccCCeeEEEE------CCCCCEEEEEe---CCCc----------EEEEEcCCC
Q 001386 864 ILIYNARSS----------EVISKLEGHSKRVTGLVF------SDALNILVSSG---GDAQ----------IFVWDVDGW 914 (1088)
Q Consensus 864 i~lwd~~~~----------~~~~~l~~h~~~V~~l~~------s~dg~~las~s---~Dg~----------i~iwd~~~~ 914 (1088)
|.-|++... ..+.++.-|-. +-.+.- .|||++|++.. .|+. -.+.|++..
T Consensus 401 vvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGd 479 (638)
T 3sbq_A 401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGD 479 (638)
T ss_dssp EEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSS
T ss_pred EEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCC
Confidence 999999764 45566655543 223333 58999999874 4554 367777664
Q ss_pred c
Q 001386 915 G 915 (1088)
Q Consensus 915 ~ 915 (1088)
+
T Consensus 480 k 480 (638)
T 3sbq_A 480 E 480 (638)
T ss_dssp S
T ss_pred c
Confidence 4
No 344
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.14 E-value=1.7 Score=46.68 Aligned_cols=192 Identities=6% Similarity=-0.029 Sum_probs=94.6
Q ss_pred CCCEEEEEeC-----------CcEEEEEcCCceeE--EEec-CCCCCeEEEEEcCCCCcEEEEEeCC-------------
Q 001386 809 NDAYLFSASG-----------GVISLYIVMTFKTI--LTIM-PPSPTATSLAFNPHDNNVIAIGMDD------------- 861 (1088)
Q Consensus 809 dg~~l~~~~d-----------g~i~iwd~~~~~~~--~~~~-~~~~~i~~l~~sp~d~~~lasg~~d------------- 861 (1088)
++++++.|+. ..+.+||..+.+=. ..+. .......++. . ++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~-~~~iyv~GG~~~~~~~~~~~~~~~ 141 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--H-NGKAYVTGGVNQNIFNGYFEDLNE 141 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--E-TTEEEEEECCCHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--E-CCEEEEEeCcCCCcCcccccchhh
Confidence 6666666542 35889998775422 2222 1111222233 3 67888888865
Q ss_pred --------------------------CeEEEEEcCCce--eeeeeccccCCeeEEEECCCCCEEEEEeCC------CcEE
Q 001386 862 --------------------------STILIYNARSSE--VISKLEGHSKRVTGLVFSDALNILVSSGGD------AQIF 907 (1088)
Q Consensus 862 --------------------------g~i~lwd~~~~~--~~~~l~~h~~~V~~l~~s~dg~~las~s~D------g~i~ 907 (1088)
..+.+||..+.+ .+..+......-.+++.. ++++++.|+.+ ..+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 220 (357)
T 2uvk_A 142 AGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVF 220 (357)
T ss_dssp HTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEE
T ss_pred cCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceE
Confidence 479999998754 333333111110122222 56677776642 3477
Q ss_pred EEEc--CCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEe-C----------------------CeEEEEEcCc
Q 001386 908 VWDV--DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH-E----------------------THLAIYEAEE 962 (1088)
Q Consensus 908 iwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~-d----------------------~~i~vwd~~~ 962 (1088)
++|+ .+.. ...+....... ....+.+...++++++.+. + ..+.+||..+
T Consensus 221 ~~d~d~~~~~---W~~~~~~~~~~---~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~ 294 (357)
T 2uvk_A 221 ELDFTGNNLK---WNKLAPVSSPD---GVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHN 294 (357)
T ss_dssp EEECC---CE---EEECCCSSTTT---CCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-
T ss_pred EEEecCCCCc---EEecCCCCCCc---ccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCC
Confidence 7877 4333 22222111100 0112233445667666642 1 2477899886
Q ss_pred cee--eeeeecCCCcCEEEEEEeeCCCEEEEEeCCC------cEEEEEcCCCceEEEec
Q 001386 963 LTC--LKQWFPISSVPISQATFSCDCRMVFTSFVDG------TLSIHEASNLEVQCRIL 1013 (1088)
Q Consensus 963 ~~~--~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg------~v~vwd~~~~~~~~~~~ 1013 (1088)
.+- +........ . ..+...+++.++.|+.++ .|.++++++++......
T Consensus 295 ~~W~~~~~~p~~r~-~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 295 GKWDKSGELSQGRA-Y--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp --CEEEEECSSCCB-S--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred CceeeCCCCCCCcc-c--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 542 222221111 1 223445788888888653 35566888888765443
No 345
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.71 E-value=1.7 Score=48.19 Aligned_cols=195 Identities=12% Similarity=0.124 Sum_probs=116.4
Q ss_pred cCCCEEEEEe--CCcEEEEEcCCceeEEEecCCC-CCeEEEEEc--CCCCcEEEEEeC-------CCeE---------EE
Q 001386 808 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPPS-PTATSLAFN--PHDNNVIAIGMD-------DSTI---------LI 866 (1088)
Q Consensus 808 ~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s--p~d~~~lasg~~-------dg~i---------~l 866 (1088)
.||++|..-. +..|...++...++-..+.-+. ..+..++|- | +..|++.+++ ||.. .+
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~ 218 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM 218 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence 3889999887 5779999999888776665443 578888886 6 6667777664 2221 11
Q ss_pred ---EEcCCceeeeeeccccCCeeEEEECCCCCEEEEEeCCC---------------cEEEEEcCC-------Cceeeee-
Q 001386 867 ---YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA---------------QIFVWDVDG-------WGIQTCR- 920 (1088)
Q Consensus 867 ---wd~~~~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg---------------~i~iwd~~~-------~~~~~~~- 920 (1088)
.|..+.+....+.- .+....+...++|++.++.+.+. -+.++++.. |+.....
T Consensus 219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 12222222211111 12333455678888888776432 256666432 1111100
Q ss_pred -eeecCCCCc------------cCCCCeEEEEEcCCCCEEEEE--eCCeEEEEEcCccee-------------eeeeecC
Q 001386 921 -SLQTPDGVM------------TLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTC-------------LKQWFPI 972 (1088)
Q Consensus 921 -~~~~~~~~~------------~~~~~v~~~~fs~dg~~l~~~--~d~~i~vwd~~~~~~-------------~~~~~~~ 972 (1088)
-+...++.. ......-.+.++|||++++++ -+.++.|+|++.... ..+..
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-- 375 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-- 375 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--
Confidence 011111111 111234568999999999996 467899999884321 11111
Q ss_pred CCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC
Q 001386 973 SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1006 (1088)
Q Consensus 973 h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~ 1006 (1088)
-.-.....+|.++|....|..-|..|.-|++...
T Consensus 376 ~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 376 LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred CCCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 2567788999999955556668999999999875
No 346
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.35 E-value=3 Score=49.48 Aligned_cols=196 Identities=10% Similarity=0.104 Sum_probs=106.4
Q ss_pred cCCCEEEEEe-C----CcEEEEEcCCceeEEEe--------cCCCCCeEEEEEcCCCCcEEEEEeCCC------eEEEEE
Q 001386 808 KNDAYLFSAS-G----GVISLYIVMTFKTILTI--------MPPSPTATSLAFNPHDNNVIAIGMDDS------TILIYN 868 (1088)
Q Consensus 808 ~dg~~l~~~~-d----g~i~iwd~~~~~~~~~~--------~~~~~~i~~l~~sp~d~~~lasg~~dg------~i~lwd 868 (1088)
.++.+++.|+ + ..+.+||..+++-...- ......-.++.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 5677777775 2 35889998765432222 11112234444543 467888887543 688999
Q ss_pred cCCce--eeeeeccccCCeeEEEECCCCCEEEEEeCCC--cEEEEEcCCCceeeeeeee-cCCCCccCCCCeEEEEEcCC
Q 001386 869 ARSSE--VISKLEGHSKRVTGLVFSDALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQ-TPDGVMTLAPSETHIQFHKD 943 (1088)
Q Consensus 869 ~~~~~--~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg--~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~fs~d 943 (1088)
..+.+ .+..+......- +++...++++++.||.++ .+.+||..+..-....... .+.... .-..+.+..+
T Consensus 475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~----~~~a~v~~~~ 549 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSL----VSAGLEFDPV 549 (695)
T ss_dssp TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCC----BSCEEEEETT
T ss_pred CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCccc----ceeEEEEeCC
Confidence 98753 333332211211 223324788888888654 6899999886532221100 111111 1234566665
Q ss_pred -CCEEEEE-e--C-----CeEEEEEcCccee-----eeeeec--CCCcCEEEEEEeeCCCEEEEEeCC--------CcEE
Q 001386 944 -QTRFLLV-H--E-----THLAIYEAEELTC-----LKQWFP--ISSVPISQATFSCDCRMVFTSFVD--------GTLS 999 (1088)
Q Consensus 944 -g~~l~~~-~--d-----~~i~vwd~~~~~~-----~~~~~~--~h~~~v~~l~fs~dg~~l~s~s~d--------g~v~ 999 (1088)
++.++.| . + +.+.+||..+..- -..... .....-.+++...+++.++.|+.+ ..|.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 5666664 2 2 3588999887761 111111 111111123333447777878743 4699
Q ss_pred EEEcCCCceE
Q 001386 1000 IHEASNLEVQ 1009 (1088)
Q Consensus 1000 vwd~~~~~~~ 1009 (1088)
+||..+....
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999998765
No 347
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=93.97 E-value=0.17 Score=53.48 Aligned_cols=193 Identities=10% Similarity=0.047 Sum_probs=102.2
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeccC-CccEEEEe-eeeeCCceEEEEE-ecCCeEEEEECCCCCceEEecCC----C
Q 001386 457 SVITCGDDKTIKVWDAVTGSRTYSFEGH-GAPVYSLC-PHAKENIHFIFSI-SVDGKIKAWLYDSLGARVDYDAP----G 529 (1088)
Q Consensus 457 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~-~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~----~ 529 (1088)
.++.++.||.|.-.|..+|+.+.++... ..++.... .....++..++.. +.||.|..++..++.....+... .
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 5788999999999999999999988654 12222211 1001133334333 68999999988766444332211 1
Q ss_pred CceEE---EEE-----ccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEecccccccc-----EEEEEEe-----CCCC
Q 001386 530 LGCTR---MAY-----SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS-----VSVVHFD-----TAKD 591 (1088)
Q Consensus 530 ~~v~~---~~~-----s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~-----v~~~~~~-----~~~~ 591 (1088)
.++.. ..+ +..+..+++++. ++.++-.|..+|+.+..+...... .. ..|.... ..+.
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~----~g~l~ald~~tG~~~W~~~~~~~~-~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSM----RTIMYTINMLNGEIISAFGPGSKN-GYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp CSEEEECC----------CCEEEEECEE----EEEEEEEETTTCCEEEEESTTCBC-C--------------------CC
T ss_pred cccccCCCceeecccccccCCEEEEEec----CCEEEEEECCCCcEEEEEecCCCc-ccccccccccccccccccccCCC
Confidence 11110 000 014456666654 667999999999999888653210 10 0111110 1235
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeEEEeCC--CCCCCCc-----eEEEecCCCEEEEEeCCCcEEEEeCCCCCccc
Q 001386 592 QILAAGDDHVIKIWDMNKVQLLTTIDAG--GGLPENP-----RICFNKNGTLLAVIANENRIKILETPESNSVD 658 (1088)
Q Consensus 592 ~l~~~s~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~-----~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 658 (1088)
.++.+..+..+.+.+ .+|+ +..+... ... .+. .-..+.|+.+ ++++.||.|.-+|..++..+.
T Consensus 167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~-~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQN-VLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEEECEECC-TTSC-CCCCEEEEEECC-TTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred eEEEecceEEEEEEC-CCCC-eEEEeccccccc-ccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 677776666666655 3343 2111100 000 000 0011234555 457888999999988776543
No 348
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=93.81 E-value=7.2 Score=40.44 Aligned_cols=168 Identities=7% Similarity=0.032 Sum_probs=94.2
Q ss_pred cCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeeeeCCceEEEEEecC--------------CeEEEEE
Q 001386 450 SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD--------------GKIKAWL 515 (1088)
Q Consensus 450 s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--------------g~i~iwd 515 (1088)
+.++..+++.....++.|...+.+.. ....+... .+..+ ..++.+|+-.... ..|+..+
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~-~~~~l~~~--~~~~i----~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~ 94 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGS-NIHKLSND--TAMYI----NADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK 94 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSC-SCEEEEEE--EEEEE----EECSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCC-CCEEccCC--ceeeE----EEcCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence 34666533333334556666664433 33333321 12222 2244555555432 3577777
Q ss_pred CCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEE
Q 001386 516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 595 (1088)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 595 (1088)
++..+........ ...|++++++|+....+.++...|+..++.... .+.+..+. + ..++++++.|+-
T Consensus 95 ~dg~~~~~l~~~~-----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~-----~--~~~~~~g~~iy~ 161 (302)
T 3s25_A 95 RNGHGSTVLDPDP-----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHY-----L--FTCNTSDRYFYY 161 (302)
T ss_dssp TTSCCCEEEECSC-----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSC-----C--CCSEEETTEEEE
T ss_pred CCCCcceEeecCC-----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCC-----c--eEeeEECCEEEE
Confidence 7766544333221 236888999999876333456778888887544 34444433 1 346778888887
Q ss_pred EeC-CCcEEEEEcCCCeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCC
Q 001386 596 AGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1088)
Q Consensus 596 ~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1088)
.+. ...|.+-++..+.....+. +. ....+.|++.+|+-....
T Consensus 162 t~~g~~~Iy~~~l~g~~~~~l~~--~~----~~~~~~P~g~~iy~t~~~ 204 (302)
T 3s25_A 162 NNPKNGQLYRYDTASQSEALFYD--CN----CYKPVVLDDTNVYYMDVN 204 (302)
T ss_dssp ECTTTCCEEEEETTTTEEEEEEC--SC----EEEEEEEETTEEEEEEGG
T ss_pred EeCCCceEEEEECCCCCEEEEeC--CC----ccceeeecCCEEEEEEcC
Confidence 665 6778888887765444332 11 223466888888766543
No 349
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=93.44 E-value=8.3 Score=39.97 Aligned_cols=182 Identities=10% Similarity=0.054 Sum_probs=100.1
Q ss_pred eeeecCCCCeEEEEEccc-------------CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEEC
Q 001386 339 SMDFHPVQHTLLLVGTNV-------------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1088)
Q Consensus 339 ~v~~spdg~~lla~g~~d-------------g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1088)
+--++++|.++..+...+ ..|+..++..++... +.. .. +.+|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~--~~--~~~~s 112 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDP--DP--CIYAS 112 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EEC--SC--EEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eec--CC--ccEEE
Confidence 345688999766665543 356666666654322 111 11 23678
Q ss_pred CCCCEEEEEe--C--CCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe
Q 001386 406 PDGSLLGVAY--S--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1088)
Q Consensus 406 ~dg~~las~~--~--dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~ 481 (1088)
+++++|+... . +..|..-++.+.. .. .+..+.. .+|+++++. +..+......|.+-++..+.....+
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~-iy~t~~g~~~Iy~~~l~g~~~~~l~ 183 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRY-FYYNNPKNGQLYRYDTASQSEALFY 183 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTE-EEEECTTTCCEEEEETTTTEEEEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCE-EEEEeCCCceEEEEECCCCCEEEEe
Confidence 8999999876 2 3356666666433 22 3444432 467888985 2334334678888887766544333
Q ss_pred ccCCccEEEEeeeeeCCceEEEEEecCC--eEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001386 482 EGHGAPVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1088)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 559 (1088)
.+ ... ..++| ++.+|+-....+ .|..-+++...... +.. ..+ ..|+|++++|+.+.... ...|..
T Consensus 184 ~~---~~~-~~~~P--~g~~iy~t~~~~~~~I~~~~ldG~~~~~-Lt~--~~~--~~~~~~g~~Iy~~~~~~--~~~i~~ 250 (302)
T 3s25_A 184 DC---NCY-KPVVL--DDTNVYYMDVNRDNAIVHVNINNPNPVV-LTE--ANI--EHYNVYGSLIFYQRGGD--NPALCV 250 (302)
T ss_dssp CS---CEE-EEEEE--ETTEEEEEEGGGTTEEEEECSSSCCCEE-CSC--SCE--EEEEEETTEEEEEECSS--SCEEEE
T ss_pred CC---Ccc-ceeee--cCCEEEEEEcCCCcEEEEEECCCCCeEE-EeC--CCc--ceEEECCCEEEEEECCC--CcEEEE
Confidence 32 222 23433 344555554432 45555565544332 221 223 34888999998764322 356777
Q ss_pred EeCCCCc
Q 001386 560 WNESEGA 566 (1088)
Q Consensus 560 wd~~~~~ 566 (1088)
.++....
T Consensus 251 ~~~DG~~ 257 (302)
T 3s25_A 251 VKNDGTG 257 (302)
T ss_dssp EETTSCC
T ss_pred EECCCCc
Confidence 7765443
No 350
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=92.65 E-value=0.11 Score=46.44 Aligned_cols=81 Identities=12% Similarity=0.210 Sum_probs=56.3
Q ss_pred ccchhhhHHHHhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccccccccccccccCC------ChHHH
Q 001386 68 YSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGD------ALSAR 141 (1088)
Q Consensus 68 ~~~~~~~~l~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~------~~~~R 141 (1088)
+.+ ++|.|+-|.||||+.+|..++|..|+.+.-..+... .+..++|+.+.....+.+++....+... .+.+-
T Consensus 30 L~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~~~~~fr~nKy~I~ls~~s~ 107 (138)
T 2j4b_A 30 LLP-LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAF 107 (138)
T ss_dssp HGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHHH
Confidence 344 899999999999999999999999999866666655 7778888887777666655543333222 13444
Q ss_pred HHHHHHHHh
Q 001386 142 KNMMLELKQ 150 (1088)
Q Consensus 142 ~~l~~~l~~ 150 (1088)
..|+.-|++
T Consensus 108 ~lL~~fL~~ 116 (138)
T 2j4b_A 108 DLLINFLEE 116 (138)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555553
No 351
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=92.57 E-value=14 Score=40.15 Aligned_cols=260 Identities=12% Similarity=0.066 Sum_probs=122.0
Q ss_pred CCCeeEEEEec--CCCEEEEEeCC----cEEEEEcCCceeEEEecC--------------CCCCeEEEEEcCCC-CcEEE
Q 001386 798 QEAVPCFALSK--NDAYLFSASGG----VISLYIVMTFKTILTIMP--------------PSPTATSLAFNPHD-NNVIA 856 (1088)
Q Consensus 798 ~~~v~~~~~s~--dg~~l~~~~dg----~i~iwd~~~~~~~~~~~~--------------~~~~i~~l~~sp~d-~~~la 856 (1088)
...|.++++.| ++.+.+.+..| .|... ...++.-..+.. ....|.++++.|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45689999998 66666666554 33322 222322222211 11257789998743 44556
Q ss_pred EEeCCCeEEEEEcC--Cceeeeeecc----------------ccCCeeEEEECCC-CCEEEEEeCCCcEEEEEcCCCcee
Q 001386 857 IGMDDSTILIYNAR--SSEVISKLEG----------------HSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQ 917 (1088)
Q Consensus 857 sg~~dg~i~lwd~~--~~~~~~~l~~----------------h~~~V~~l~~s~d-g~~las~s~Dg~i~iwd~~~~~~~ 917 (1088)
++...+.|...+=. +.+.+..+.. ....|.+|.+.|. ...|..+..++.|...+ +.++
T Consensus 133 ~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~-- 209 (394)
T 3b7f_A 133 AGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGT-- 209 (394)
T ss_dssp EEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTS--
T ss_pred EEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCC--
Confidence 66666666554321 1222221111 1235788999873 34444444444333322 2221
Q ss_pred eeeeeec-CCC-Cc-----cCCCCeEEEEEcCC-CCEEEEEeCCeEEEEEcCcceeeeeeecCC-C---cCEEEEEEee-
Q 001386 918 TCRSLQT-PDG-VM-----TLAPSETHIQFHKD-QTRFLLVHETHLAIYEAEELTCLKQWFPIS-S---VPISQATFSC- 984 (1088)
Q Consensus 918 ~~~~~~~-~~~-~~-----~~~~~v~~~~fs~d-g~~l~~~~d~~i~vwd~~~~~~~~~~~~~h-~---~~v~~l~fs~- 984 (1088)
....+.. ... .. .....+.++++.|+ ...|.++..+.|...+- .++....+...- . ..+..+++.|
T Consensus 210 tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~ 288 (394)
T 3b7f_A 210 DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQR 288 (394)
T ss_dssp SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSS
T ss_pred CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCC-CCCcceECCCCCCCCCccceEEEEECCC
Confidence 1111111 000 00 00124789999986 35566665666655542 233222221111 1 3456788876
Q ss_pred CCCEEEEEeC-----------CCcEEEEEcCC-CceEEEeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEE
Q 001386 985 DCRMVFTSFV-----------DGTLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVY 1052 (1088)
Q Consensus 985 dg~~l~s~s~-----------dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~ 1052 (1088)
+...|.++.. ++...+|.... |+.-..+. ..++....-..+...+++++|.++..|.+++.++.|
T Consensus 289 ~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l- 365 (394)
T 3b7f_A 289 DPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI- 365 (394)
T ss_dssp CTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE-
T ss_pred CCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE-
Confidence 3344444432 33345665554 33322222 111211000111223577888555667777666654
Q ss_pred EEeCCCCCCCcccc
Q 001386 1053 VIEPNEPGDTWAVL 1066 (1088)
Q Consensus 1053 ~w~l~~~~~~~~~~ 1066 (1088)
|.-.+.+..|...
T Consensus 366 -~~S~D~G~tW~~~ 378 (394)
T 3b7f_A 366 -WASADEGEHWQCI 378 (394)
T ss_dssp -EEESSTTSBCEEE
T ss_pred -EEECCCCCCceEc
Confidence 4555677788744
No 352
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=92.00 E-value=0.18 Score=46.17 Aligned_cols=62 Identities=11% Similarity=0.218 Sum_probs=49.1
Q ss_pred hhhHHHHhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccccccccccccc
Q 001386 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKY 133 (1088)
Q Consensus 72 ~~~~l~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 133 (1088)
++|.|+-|.||||+..|..++|..|+++.-..+.....+..++|+.+....+..+++....+
T Consensus 52 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~f 113 (156)
T 2nxp_A 52 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDF 113 (156)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGG
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHH
Confidence 89999999999999999999999999986555554456778888887777666665544443
No 353
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=91.50 E-value=20 Score=39.71 Aligned_cols=56 Identities=21% Similarity=0.169 Sum_probs=35.8
Q ss_pred CCeEEEEECCCCC-EEEEEeCCCEEEEEEccCCCcccceeEec---------cCCCCEEEEEecCC
Q 001386 397 VSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEID---------AHVGNVNDLAFSAP 452 (1088)
Q Consensus 397 ~~V~~l~~s~dg~-~las~~~dg~i~vwd~~~~~~~~~~~~~~---------~h~~~v~~~~~s~d 452 (1088)
.....|+|.|||. .|.++...|.|++++.........+..+. ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 3567899999996 55556788999999754321111111111 11456889999997
No 354
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=90.61 E-value=24 Score=39.06 Aligned_cols=106 Identities=13% Similarity=0.130 Sum_probs=62.2
Q ss_pred CCeeEEEEecCCC--EEEEEeCCcEEEEEcCCce---eEEEec---C------CCCCeEEEEEcCC---CCcEEEEEeCC
Q 001386 799 EAVPCFALSKNDA--YLFSASGGVISLYIVMTFK---TILTIM---P------PSPTATSLAFNPH---DNNVIAIGMDD 861 (1088)
Q Consensus 799 ~~v~~~~~s~dg~--~l~~~~dg~i~iwd~~~~~---~~~~~~---~------~~~~i~~l~~sp~---d~~~lasg~~d 861 (1088)
.....|+|.|||. ++++-..|.|++++..... .+..+. . .......|+|+|+ ++.+.++-+.+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3467899999995 7777668999999754221 222221 1 1356789999993 24444443321
Q ss_pred ------------CeEEEEEcCC----------ceeeeeec--cccCCeeEEEECCCCCEEEEEeCCC
Q 001386 862 ------------STILIYNARS----------SEVISKLE--GHSKRVTGLVFSDALNILVSSGGDA 904 (1088)
Q Consensus 862 ------------g~i~lwd~~~----------~~~~~~l~--~h~~~V~~l~~s~dg~~las~s~Dg 904 (1088)
..|.-|.+.. .+.+..+. ........|+|.|||.+.++.+..+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1444465532 12333332 1122357899999998888776543
No 355
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=90.58 E-value=11 Score=40.10 Aligned_cols=171 Identities=13% Similarity=0.175 Sum_probs=94.9
Q ss_pred cEEEEEcCCc--eeEEEecCC------CCCeEEEEEc---CC---CCcEEEEEe-CCCeEEEEEcCCceeeeeec-----
Q 001386 820 VISLYIVMTF--KTILTIMPP------SPTATSLAFN---PH---DNNVIAIGM-DDSTILIYNARSSEVISKLE----- 879 (1088)
Q Consensus 820 ~i~iwd~~~~--~~~~~~~~~------~~~i~~l~~s---p~---d~~~lasg~-~dg~i~lwd~~~~~~~~~l~----- 879 (1088)
+|.+||+.+. +.++++.-+ ......+++. |. ++.++.... ..+.|.|+|+.+++.-+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4667888887 777765432 3456778777 21 134444444 46789999999886544331
Q ss_pred ---------cc----cCCeeEEEECCC----CCEEEEEeCCCcEEEEEcCCCceeee---eeeecCCCCccCCCCeEEEE
Q 001386 880 ---------GH----SKRVTGLVFSDA----LNILVSSGGDAQIFVWDVDGWGIQTC---RSLQTPDGVMTLAPSETHIQ 939 (1088)
Q Consensus 880 ---------~h----~~~V~~l~~s~d----g~~las~s~Dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~ 939 (1088)
|. ...|..|++||+ ++.|....-.+ -++|.+.+.-.... ..++.. |.......-..++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALA 281 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEE
Confidence 11 236888999998 78888776555 36676654211110 001111 0000001233566
Q ss_pred Ec-CCCCEEEE-EeCCeEEEEEcCc-c---eeeeeeec-CCCcCEEEEEEeeCCCEEEEE
Q 001386 940 FH-KDQTRFLL-VHETHLAIYEAEE-L---TCLKQWFP-ISSVPISQATFSCDCRMVFTS 992 (1088)
Q Consensus 940 fs-~dg~~l~~-~~d~~i~vwd~~~-~---~~~~~~~~-~h~~~v~~l~fs~dg~~l~s~ 992 (1088)
+. .+|.++++ ...+.|..|+..+ . +....+.. ..-..+..+.+..+|.+.+..
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 75 67776666 4668899999875 1 11122111 123346667766666555544
No 356
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=90.51 E-value=15 Score=39.21 Aligned_cols=171 Identities=11% Similarity=0.076 Sum_probs=92.9
Q ss_pred cEEEEeCCCC--ceeEEeccC------CccEEEEeee-eeC-----CceEEEEEecCCeEEEEECCCCCceEEec----C
Q 001386 466 TIKVWDAVTG--SRTYSFEGH------GAPVYSLCPH-AKE-----NIHFIFSISVDGKIKAWLYDSLGARVDYD----A 527 (1088)
Q Consensus 466 ~i~vwd~~~~--~~~~~~~~~------~~~v~~~~~~-~~~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~ 527 (1088)
.|.+||+.++ +.++++.-. ...+..+.+. ..+ ++...++-+..+.|.++|+.+++...... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4667888888 877766432 3457778776 211 33334444567789999998876544331 1
Q ss_pred C--------------CCceEEEEEccC----CCEEEEEeeCCCCceeEEEEe---CCCC---ceeEEEeccccccccEEE
Q 001386 528 P--------------GLGCTRMAYSAN----GRRLFSCGTSKEGESFLVEWN---ESEG---AIKRTYQGLQLQHNSVSV 583 (1088)
Q Consensus 528 ~--------------~~~v~~~~~s~~----g~~l~~~~~~~~~~~~i~iwd---~~~~---~~~~~~~~~~~~~~~v~~ 583 (1088)
. ...+..++++|+ ++.|+.....+. .++-.. ++.. ..++. .+.......-..
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~---~ly~V~T~~L~~~~~~~~v~~-~G~kg~~s~~~~ 279 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI---KVYSVNTKELKQKGGKLNPEL-LGNRGKYNDAIA 279 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS---EEEEEEHHHHSSTTCCCCCEE-EEECCTTCCEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC---cEEEEEHHHhhCcchhhceEE-eeecCCCCCcce
Confidence 1 136788999998 788887765332 122221 1111 11221 121200123344
Q ss_pred EEEe-CCCCEEEEEeCCCcEEEEEcCC-C---eeeEEEeCCCCCCCCceEEEecCCCEEEEE
Q 001386 584 VHFD-TAKDQILAAGDDHVIKIWDMNK-V---QLLTTIDAGGGLPENPRICFNKNGTLLAVI 640 (1088)
Q Consensus 584 ~~~~-~~~~~l~~~s~dg~i~iwd~~~-~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 640 (1088)
+++. .+|..+++--....|..|+..+ . +....+...........+.+.++|.+.+..
T Consensus 280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 280 LAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred EEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 5665 5676677777888999999875 1 222333322233334455555555444433
No 357
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=89.89 E-value=19 Score=36.79 Aligned_cols=183 Identities=10% Similarity=-0.003 Sum_probs=98.3
Q ss_pred CeeEEEEecCCCEEEEEeCCcEEEEEcCCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeec
Q 001386 800 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 879 (1088)
Q Consensus 800 ~v~~~~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~ 879 (1088)
.|..++...+-.. +. .+|.|..|-....-.+.....-...|..++... ...+.-. ||.|+.|-......+....
T Consensus 64 ~i~~ia~G~~hs~-~l-~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHSL-AL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEEE-EE-ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEEE-EE-ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 5666666544333 33 488888887654322111111134688888764 3444445 9999999765532222222
Q ss_pred cccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCccCCCCeEEEEEcCCCCEEEEEeCCeEEEEE
Q 001386 880 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYE 959 (1088)
Q Consensus 880 ~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~~~d~~i~vwd 959 (1088)
.....|..++...+.. ++ .. ||.|..|-........ .+... ...|..++...+...++ .|+.|+.|-
T Consensus 138 ~~~~~i~~i~~G~~~~-~~-l~-~G~v~~wG~n~~gqlg-----~p~~~---~~~v~~i~~G~~hs~al--~~G~v~~wG 204 (282)
T 3qhy_B 138 EAQSGVTALDGGVYTA-LA-VK-NGGVIAWGDNYFGQTT-----VPAEA---QSGVDDVAGGIFHSLAL--KDGKVIAWG 204 (282)
T ss_dssp GGGSSEEEEEECSSEE-EE-EE-TTEEEEEECCTTSTTS-----CCGGG---GSSEEEEEECSSEEEEE--ETTEEEEEE
T ss_pred cCCCCeEEEEcccCEE-EE-EE-CCEEEEecCCCCCCCC-----Cceec---CCCeEEEEecCCEEEEE--ECCeEEEEE
Confidence 2335677777654432 23 34 7999999876522111 11100 12467776665555444 699999997
Q ss_pred cCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCC
Q 001386 960 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1005 (1088)
Q Consensus 960 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~ 1005 (1088)
....-.+.... .....|..++...+- .++ -. ||.|..|-...
T Consensus 205 ~n~~gqlg~p~-~~~~~v~~i~~G~~h-~~a-l~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 205 DNRYKQTTVPT-EALSGVSAIASGEWY-SLA-LK-NGKVIAWGSSR 246 (282)
T ss_dssp CCTTSTTCCCG-GGGSSCCEEEECSSC-EEE-EE-TTEEEEESTTC
T ss_pred CCCCCCCCCCc-ccCCCceEEEcCCCE-EEE-EE-CCEEEEecCCC
Confidence 65433332211 113456666644332 233 33 99999996554
No 358
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=89.81 E-value=37 Score=39.99 Aligned_cols=244 Identities=8% Similarity=0.001 Sum_probs=123.4
Q ss_pred eeee-ecCCCCeEEEEEccc----CcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCC-----CCeEEEEECCC
Q 001386 338 MSMD-FHPVQHTLLLVGTNV----GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-----VSVNRVVWSPD 407 (1088)
Q Consensus 338 ~~v~-~spdg~~lla~g~~d----g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~-----~~V~~l~~s~d 407 (1088)
..+. ++||+++++++-|.. .+++++|+.+++.+.. .|. . .... .....++|..+
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~--------------~~k~~~~~~~~~~~~~W~d~ 195 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-P--------------ITNSGKLLEGKFTYPTWINK 195 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-C--------------BCTTCCBCCEETCCEEEEET
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-c--------------ccccccccccccceeeEECC
Confidence 3444 899999766655544 3699999999986632 000 0 0000 01133466533
Q ss_pred CCEEEEE----------eCCCEEEEEEccCCCcccceeEeccCCCCE-EEEEecCCCCcE---EEEEEeCC---CcEEEE
Q 001386 408 GSLLGVA----------YSKHIVQLYAYHGGSDARQQLEIDAHVGNV-NDLAFSAPCKQI---SVITCGDD---KTIKVW 470 (1088)
Q Consensus 408 g~~las~----------~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v-~~~~~s~d~~~l---~l~s~s~d---~~i~vw 470 (1088)
+..+++. +....|+.|.+.+...-. ...+.+....+ .....+++++.. .+++.+.+ ..+.+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 274 (711)
T 4hvt_A 196 DTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKA-KKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYIL 274 (711)
T ss_dssp TEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGC-EEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEE
T ss_pred CEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHC-eEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEE
Confidence 3333321 122468888887653221 11343333332 345567777741 35554422 345666
Q ss_pred eCCC--CceeEEeccCCccEEEEeeeeeCCceEEEEE----------ecCCeEEEEECCCC-------CceEE-e-cCCC
Q 001386 471 DAVT--GSRTYSFEGHGAPVYSLCPHAKENIHFIFSI----------SVDGKIKAWLYDSL-------GARVD-Y-DAPG 529 (1088)
Q Consensus 471 d~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~----------~~dg~i~iwd~~~~-------~~~~~-~-~~~~ 529 (1088)
|... ++ +..+....... +.. ..++.+++.. ...+.|...|+... ..... + ....
T Consensus 275 ~~~~~~~~-~~~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (711)
T 4hvt_A 275 DTKYKNLK-LQKINMPSDAT--LQG--SFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTAN 349 (711)
T ss_dssp ECSSSSCE-EEECCSCTTCE--EEE--EETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTT
T ss_pred cCCCCCCc-ceEeecCCcce--Eee--eECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCC
Confidence 6553 33 22332222111 111 1234444422 24677888888763 12222 2 2233
Q ss_pred CceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCc-eeEE-EeccccccccEEEEEEeCCCCEEEE-Ee---CCCcEE
Q 001386 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRT-YQGLQLQHNSVSVVHFDTAKDQILA-AG---DDHVIK 603 (1088)
Q Consensus 530 ~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~-~s---~dg~i~ 603 (1088)
..+..+.+..+ ..+++... ++...+.++++.++. .... +.... .+.+......+++..++. .+ .-+.+.
T Consensus 350 ~~l~~~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~--~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~ 424 (711)
T 4hvt_A 350 EVFNFISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPY--QNAIFGMSSYEEEEEALITIENSIVPPTIY 424 (711)
T ss_dssp EEEEEEEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCS--TTCEEEEECCTTCSCEEEEEECSSSCCEEE
T ss_pred CeEEEEEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCC--CeEEEEEeecCcCCEEEEEEecCCCCCEEE
Confidence 46777888766 34444433 456678999987774 2233 32221 135666666677655443 33 346788
Q ss_pred EEEcC
Q 001386 604 IWDMN 608 (1088)
Q Consensus 604 iwd~~ 608 (1088)
.+|+.
T Consensus 425 ~~d~~ 429 (711)
T 4hvt_A 425 LWVKT 429 (711)
T ss_dssp EECTT
T ss_pred EEeCC
Confidence 88876
No 359
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=89.71 E-value=0.091 Score=47.39 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=49.3
Q ss_pred cccchhhhHHHHhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccccccccccccccCC------ChHH
Q 001386 67 RYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGD------ALSA 140 (1088)
Q Consensus 67 ~~~~~~~~~l~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~------~~~~ 140 (1088)
.+.+ ++|.|+-|.||||+..| .++|..|+.+.-..+.....+.+++|+.+....++.+++....+... .+.+
T Consensus 31 EL~~-lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~n~~~~~fr~nKy~I~ls~~s 108 (148)
T 2j49_A 31 ELSY-IMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTT 108 (148)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHH
Confidence 3444 99999999999999999 99999999885444432223444555555444455444433332222 2344
Q ss_pred HHHHHHHHH
Q 001386 141 RKNMMLELK 149 (1088)
Q Consensus 141 R~~l~~~l~ 149 (1088)
-..|+.-|+
T Consensus 109 ~~lL~~fL~ 117 (148)
T 2j49_A 109 LNLLLYFLN 117 (148)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 445555555
No 360
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=89.17 E-value=21 Score=36.39 Aligned_cols=222 Identities=13% Similarity=0.095 Sum_probs=107.6
Q ss_pred CceeeeecCCCCeEEEEEcccCcEEEEecCCCcceeeeceeeeeeccccccceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 001386 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1088)
Q Consensus 336 ~V~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~las~~ 415 (1088)
.|..++....- .++. . ||.|..|-......+... ......|..++...+- .+|. .
T Consensus 25 ~i~~ia~G~~h--~~~l-~-~G~v~~wG~n~~Gqlg~p-------------------~~~~~~i~~ia~G~~h-s~~l-~ 79 (282)
T 3qhy_B 25 GVDAIAGGYFH--GLAL-K-GGKVLGWGANLNGQLTMP-------------------AATQSGVDAIAAGNYH-SLAL-K 79 (282)
T ss_dssp SCCEEEECSSE--EEEE-E-TTEEEEEECCSSSTTSCC-------------------GGGGSCCCEEEECSSE-EEEE-E
T ss_pred CCcEEEeCCCe--EEEE-E-CCEEEEEeCCCCCCCCCC-------------------ccCCCCEEEEEeCCCE-EEEE-E
Confidence 46666654432 3444 3 788888876654433210 0012357777765433 3333 4
Q ss_pred CCCEEEEEEccCCCcccceeEeccCCCCEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeccCCccEEEEeeee
Q 001386 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1088)
Q Consensus 416 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 495 (1088)
||.|..|-......+.... .-...|..++...+. .+.-. ||.|..|-......+-.-......|..++.
T Consensus 80 -~G~v~~wG~n~~Gqlg~P~---~~~~~v~~ia~G~~h----s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~-- 148 (282)
T 3qhy_B 80 -DGEVIAWGGNEDGQTTVPA---EARSGVDAIAAGAWA----SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDG-- 148 (282)
T ss_dssp -TTEEEEEECCTTSTTCCCG---GGSSSEEEEEEETTE----EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEE--
T ss_pred -CCEEEEeeCCCCCCCCCCc---ccCCCeEEEECcCCE----EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEc--
Confidence 8999999876543332111 113468777766543 23334 899999975432222111112345666654
Q ss_pred eCCceEEEEEecCCeEEEEECCCCCceEEecCCCCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccc
Q 001386 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1088)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1088)
. ....++ -. ||.|..|-................|..++...+...++ . ++.++.|-......+.. ...
T Consensus 149 G-~~~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al---~----~G~v~~wG~n~~gqlg~-p~~- 216 (282)
T 3qhy_B 149 G-VYTALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL---K----DGKVIAWGDNRYKQTTV-PTE- 216 (282)
T ss_dssp C-SSEEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE---E----TTEEEEEECCTTSTTCC-CGG-
T ss_pred c-cCEEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE---E----CCeEEEEECCCCCCCCC-Ccc-
Confidence 1 222333 33 79999996654332211111123455555433332222 2 34477775443211110 000
Q ss_pred cccccEEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 001386 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1088)
Q Consensus 576 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 609 (1088)
....|..++.... +.++.. ||.|+.|=...
T Consensus 217 -~~~~v~~i~~G~~--h~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 217 -ALSGVSAIASGEW--YSLALK-NGKVIAWGSSR 246 (282)
T ss_dssp -GGSSCCEEEECSS--CEEEEE-TTEEEEESTTC
T ss_pred -cCCCceEEEcCCC--EEEEEE-CCEEEEecCCC
Confidence 0134555554433 223333 88888886544
No 361
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=88.91 E-value=15 Score=43.51 Aligned_cols=199 Identities=13% Similarity=0.054 Sum_probs=101.5
Q ss_pred CCCCcEEEEEEeCC----CcEEEEeCCCCceeEEe-c-----cCCcc-EEEEeeeeeC-CceEEEEEecCC------eEE
Q 001386 451 APCKQISVITCGDD----KTIKVWDAVTGSRTYSF-E-----GHGAP-VYSLCPHAKE-NIHFIFSISVDG------KIK 512 (1088)
Q Consensus 451 ~d~~~l~l~s~s~d----~~i~vwd~~~~~~~~~~-~-----~~~~~-v~~~~~~~~~-~~~~l~s~~~dg------~i~ 512 (1088)
.++. +++.||.+ ..+.+||+.+++-...- . ..... -.+++. -. ++.+++.|+.++ .+.
T Consensus 396 ~~~~--iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~--~~~~~~lyv~GG~~~~~~~~~dv~ 471 (695)
T 2zwa_A 396 AGND--VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTT--ISRNNQLLLIGGRKAPHQGLSDNW 471 (695)
T ss_dssp CSSC--EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEE--ETTTTEEEEECCBSSTTCBCCCCE
T ss_pred ECCE--EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEE--EccCCEEEEEcCCCCCCCccccEE
Confidence 3455 56666643 45888898877643322 1 01111 011111 22 556777776543 477
Q ss_pred EEECCCCCceEEecCCCCc-eEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEec--cccccccEEEEEEeCC
Q 001386 513 AWLYDSLGARVDYDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG--LQLQHNSVSVVHFDTA 589 (1088)
Q Consensus 513 iwd~~~~~~~~~~~~~~~~-v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~ 589 (1088)
+||..+..-...-..+... -.+++...+++.++.|+.+..+ .+.+||..+.+-...-.. .........++.+..+
T Consensus 472 ~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 472 IFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp EEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred EEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 7887764322211111111 1223333478888888765543 699999988765433210 1101122233555655
Q ss_pred -CCEEEEEeC--C-----CcEEEEEcCCCee-----eEEEeCCCCCCC-CceEEEecCCCEEEEEeCC--------CcEE
Q 001386 590 -KDQILAAGD--D-----HVIKIWDMNKVQL-----LTTIDAGGGLPE-NPRICFNKNGTLLAVIANE--------NRIK 647 (1088)
Q Consensus 590 -~~~l~~~s~--d-----g~i~iwd~~~~~~-----~~~~~~~~~~~~-v~~v~~s~~~~~l~~~~~d--------g~i~ 647 (1088)
+..++.|+. + ..+.+||+.+... ...+........ -.+++...++++++.|+.+ ..+.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 556666654 2 4588999988772 222211100111 1233444447777777742 4578
Q ss_pred EEeCCCCC
Q 001386 648 ILETPESN 655 (1088)
Q Consensus 648 iwd~~~~~ 655 (1088)
+||..+..
T Consensus 630 ~yd~~t~~ 637 (695)
T 2zwa_A 630 SLDPLSET 637 (695)
T ss_dssp EEETTTTE
T ss_pred EEECCCCe
Confidence 88887653
No 362
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=85.44 E-value=44 Score=36.02 Aligned_cols=205 Identities=9% Similarity=0.068 Sum_probs=94.0
Q ss_pred CcEEEEEeCCCeEEEEEcCC-c---eeeeeeccccCCeeEEEECC--CCCEEEEEeCCC--cEEEEEc-CCCceeeeeee
Q 001386 852 NNVIAIGMDDSTILIYNARS-S---EVISKLEGHSKRVTGLVFSD--ALNILVSSGGDA--QIFVWDV-DGWGIQTCRSL 922 (1088)
Q Consensus 852 ~~~lasg~~dg~i~lwd~~~-~---~~~~~l~~h~~~V~~l~~s~--dg~~las~s~Dg--~i~iwd~-~~~~~~~~~~~ 922 (1088)
...|.+|+..| +.+++... + +..... .....|.+|++.| ++.+.+.+ ..| .-.||.. +.++. ...+
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~g~-~~g~~g~gl~~s~D~G~t--W~~~ 96 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLMAA-RTGHLGPTVFRSDDGGGN--WTEA 96 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEEEE-EC--CCEEEEEESSTTSC--CEEC
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEEEe-cCCCCCccEEEeCCCCCC--ceEC
Confidence 34677788777 55555432 2 222111 1234699999998 55555544 333 0123333 22221 1111
Q ss_pred ecC---CCCcc-----CCCCeEEEEEcC---CCCEEEEEeCCeEEEEEcCcceeeeeeec------------------CC
Q 001386 923 QTP---DGVMT-----LAPSETHIQFHK---DQTRFLLVHETHLAIYEAEELTCLKQWFP------------------IS 973 (1088)
Q Consensus 923 ~~~---~~~~~-----~~~~v~~~~fs~---dg~~l~~~~d~~i~vwd~~~~~~~~~~~~------------------~h 973 (1088)
... ..... ....|.++++.| .+...+.+..+.|...+- .|+.-..... ..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~ 175 (394)
T 3b7f_A 97 TRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPD 175 (394)
T ss_dssp SBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CC
T ss_pred CccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCC
Confidence 111 00000 012477899987 455555556666554432 2222211110 11
Q ss_pred CcCEEEEEEeeC-CCEEEEEeCCCcEEEEEcCCCceEEEeccc---cccCCCCccccccceEEEECCCCCCEEEEEeCCC
Q 001386 974 SVPISQATFSCD-CRMVFTSFVDGTLSIHEASNLEVQCRILST---AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG 1049 (1088)
Q Consensus 974 ~~~v~~l~fs~d-g~~l~s~s~dg~v~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~d~~~l~~~~~dg 1049 (1088)
...+.++.+.|. ...|..+..++.|... .+.|+.-..+... .+++...........+++++|.++..+.++...|
T Consensus 176 ~~~i~~i~~d~~~~~~l~vg~~~ggl~~s-~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 176 GPKMHSILVDPRDPKHLYIGMSSGGVFES-TDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp CCEEEEEEECTTCTTCEEEEEETBEEEEE-SSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred CCceeEEEECCCCCCEEEEEECCCCEEEE-CCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 235788999873 3445555545544332 2333322222110 1111110000112456888886567777776554
Q ss_pred cEEEEeCCCCCCCcccc
Q 001386 1050 EVYVIEPNEPGDTWAVL 1066 (1088)
Q Consensus 1050 ~v~~w~l~~~~~~~~~~ 1066 (1088)
+|...+.+.+|...
T Consensus 255 ---l~~s~D~G~tW~~~ 268 (394)
T 3b7f_A 255 ---IYRMDRREGVWKRI 268 (394)
T ss_dssp ---EEEEETTTTEEECG
T ss_pred ---EEEeCCCCCcceEC
Confidence 44445566777644
No 363
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.39 E-value=5.5 Score=49.00 Aligned_cols=40 Identities=15% Similarity=0.061 Sum_probs=34.5
Q ss_pred cCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEecc
Q 001386 975 VPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1014 (1088)
Q Consensus 975 ~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 1014 (1088)
..+.+++..+|..++++-+.|+++|+|++.++.++.....
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 3567778888899999999999999999999999887653
No 364
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=75.07 E-value=83 Score=32.71 Aligned_cols=159 Identities=8% Similarity=0.094 Sum_probs=91.9
Q ss_pred CCCeeEEEEec---CCCEEEEEe-CCcEEEEEcCCceeE-------EEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEE
Q 001386 798 QEAVPCFALSK---NDAYLFSAS-GGVISLYIVMTFKTI-------LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 866 (1088)
Q Consensus 798 ~~~v~~~~~s~---dg~~l~~~~-dg~i~iwd~~~~~~~-------~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~l 866 (1088)
...|.++..-+ +..+++..+ +|.++...+...... ..+.. ...+..+.... +...|+..+..|.+..
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~r 171 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSIR 171 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEEE
Confidence 45555554433 466777776 899998887653321 22332 34555555554 4567888889999888
Q ss_pred EEcC--C---------ceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCcee----e-eeeeecCCCCcc
Q 001386 867 YNAR--S---------SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ----T-CRSLQTPDGVMT 930 (1088)
Q Consensus 867 wd~~--~---------~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~----~-~~~~~~~~~~~~ 930 (1088)
+... . |.....+. ....|.++...+++.+|+.++..|.++.-.+..-... . ...++..+..
T Consensus 172 f~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~-- 248 (327)
T 3uc1_A 172 FSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRR-- 248 (327)
T ss_dssp EECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTT--
T ss_pred EECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCC--
Confidence 8776 2 22222233 2445777777667778999999999998887642211 1 1112211101
Q ss_pred CCCCeEEEE-EcCCCCEEEEEeCCeEEEEEcCcc
Q 001386 931 LAPSETHIQ-FHKDQTRFLLVHETHLAIYEAEEL 963 (1088)
Q Consensus 931 ~~~~v~~~~-fs~dg~~l~~~~d~~i~vwd~~~~ 963 (1088)
+.+..+. ...+...++++.+|.+.-++...-
T Consensus 249 --d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i 280 (327)
T 3uc1_A 249 --GRLVGALIVDDDSELYAVTSGGGVIRTAARQV 280 (327)
T ss_dssp --CSEEEEEEECTTCEEEEEEGGGCEEEEEGGGS
T ss_pred --CeEEEEEEeCCCccEEEEcCCCeEEEEehhhc
Confidence 1233433 344445555577787777776543
No 365
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=74.17 E-value=87 Score=32.54 Aligned_cols=201 Identities=12% Similarity=0.081 Sum_probs=108.1
Q ss_pred CeeEEE-EecCCCEEEEEeCCcEEEEE---cCC------ceeEEEec--CCCCCeEEEEEcCC--CCcEEEEEeCCCeEE
Q 001386 800 AVPCFA-LSKNDAYLFSASGGVISLYI---VMT------FKTILTIM--PPSPTATSLAFNPH--DNNVIAIGMDDSTIL 865 (1088)
Q Consensus 800 ~v~~~~-~s~dg~~l~~~~dg~i~iwd---~~~------~~~~~~~~--~~~~~i~~l~~sp~--d~~~lasg~~dg~i~ 865 (1088)
.+..+. .+....+++..+.|.+.... +.. |..+..+- .....|.++..-++ +..+++..+.+|.|+
T Consensus 43 ~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iK 122 (327)
T 3uc1_A 43 IVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVK 122 (327)
T ss_dssp CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEE
T ss_pred EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEE
Confidence 344333 34444555566677655444 332 23222221 13345665544331 467999999999999
Q ss_pred EEEcCCc-------eeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcC--C----Cceeeee-eeecCCCCccC
Q 001386 866 IYNARSS-------EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD--G----WGIQTCR-SLQTPDGVMTL 931 (1088)
Q Consensus 866 lwd~~~~-------~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~--~----~~~~~~~-~~~~~~~~~~~ 931 (1088)
.-.+... .....++. .+.+..+........|+..+..|.+..+.+. . +...... .+....
T Consensus 123 r~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~----- 196 (327)
T 3uc1_A 123 KSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNI----- 196 (327)
T ss_dssp EEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCT-----
T ss_pred EeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCC-----
Confidence 9887542 22233443 3445555555555678888899988888776 2 1111111 111111
Q ss_pred CCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCcceee-------eee-ecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEE
Q 001386 932 APSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCL-------KQW-FPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1002 (1088)
Q Consensus 932 ~~~v~~~~fs~dg~~l~~-~~d~~i~vwd~~~~~~~-------~~~-~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd 1002 (1088)
...|.++...+++..++. +..|.++.-.+..-... ..+ +..-.+.+..+....+...++..+.+|.+.-++
T Consensus 197 ~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~ 276 (327)
T 3uc1_A 197 DDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTA 276 (327)
T ss_dssp TCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEE
T ss_pred CCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEe
Confidence 134666666555555555 77788887776533221 111 111134455555555555666677788777777
Q ss_pred cCCC
Q 001386 1003 ASNL 1006 (1088)
Q Consensus 1003 ~~~~ 1006 (1088)
+..-
T Consensus 277 ~~~i 280 (327)
T 3uc1_A 277 ARQV 280 (327)
T ss_dssp GGGS
T ss_pred hhhc
Confidence 6543
No 366
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=73.16 E-value=82 Score=31.79 Aligned_cols=194 Identities=6% Similarity=0.008 Sum_probs=106.2
Q ss_pred EEEEecCCCEEEEEeCCcEE---EEEcCCceeEEEecCCCCCeEEEEEcCC-CCcEEEEEeCCCeEEEEEcCCc------
Q 001386 803 CFALSKNDAYLFSASGGVIS---LYIVMTFKTILTIMPPSPTATSLAFNPH-DNNVIAIGMDDSTILIYNARSS------ 872 (1088)
Q Consensus 803 ~~~~s~dg~~l~~~~dg~i~---iwd~~~~~~~~~~~~~~~~i~~l~~sp~-d~~~lasg~~dg~i~lwd~~~~------ 872 (1088)
.+..+....+++..+.|.++ +|++..+.... +-.....|.++.. ++ +..+++..+.+|.++-..+..-
T Consensus 29 ~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G 106 (276)
T 3no0_A 29 ILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQG 106 (276)
T ss_dssp EEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTT
T ss_pred EEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCC
Confidence 33444455666666677654 34444332211 2224556766644 32 3568999999999999887542
Q ss_pred eeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCc----eeee-eeeecCCCCccCCCCeEEEEEcCCCCEE
Q 001386 873 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG----IQTC-RSLQTPDGVMTLAPSETHIQFHKDQTRF 947 (1088)
Q Consensus 873 ~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~----~~~~-~~~~~~~~~~~~~~~v~~~~fs~dg~~l 947 (1088)
.....++. .+.+..+........++..+..|.+..+....-. .... ..+....+ ..|..+...+++..+
T Consensus 107 ~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~-----d~vv~~~~~~~~~~l 180 (276)
T 3no0_A 107 MPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKN-----DETSGLRIWNGEPYL 180 (276)
T ss_dssp EECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTT-----CCEEEEEEESSCSEE
T ss_pred eEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCC-----CEEEEEEEeCCCCEE
Confidence 22223332 3456666666566678888999988887764311 0011 11111112 245665544555455
Q ss_pred EE-EeCCeEEEEEcCcceee-------eeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEE--EEcCCC
Q 001386 948 LL-VHETHLAIYEAEELTCL-------KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI--HEASNL 1006 (1088)
Q Consensus 948 ~~-~~d~~i~vwd~~~~~~~-------~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~v--wd~~~~ 1006 (1088)
+. +..|.++...+..-... ..+ ...+.+..+....++..++..+.+|.+.. +++..-
T Consensus 181 l~~T~~G~~kr~~~~e~~~~~R~gkGv~~i--~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~i 247 (276)
T 3no0_A 181 LVITAKGRVKKISHEEIPKTNRGVKGTEVS--GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKDI 247 (276)
T ss_dssp EEEETTSCEEEEEGGGSCCCCTTCCCEECC--CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGGS
T ss_pred EEEeCCCcEEEeEHHHcccCCCCCcceEEE--cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHHC
Confidence 44 77788888776543221 111 22445555544444445666677777766 665443
No 367
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=72.51 E-value=85 Score=31.68 Aligned_cols=113 Identities=15% Similarity=0.169 Sum_probs=72.1
Q ss_pred CCCCeeEEEEec--CCCEEEEEe-CCcEEEEEcCCce------eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 001386 797 SQEAVPCFALSK--NDAYLFSAS-GGVISLYIVMTFK------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 867 (1088)
Q Consensus 797 ~~~~v~~~~~s~--dg~~l~~~~-dg~i~iwd~~~~~------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lw 867 (1088)
....|..+.. + +..+++..+ +|.++...+.... ....+. ..+.+..+.... +...++..+..|.++.+
T Consensus 66 ~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~-~~~~ill~T~~G~~~r~ 142 (276)
T 3no0_A 66 REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSV-DETHILLFTKKGRVARF 142 (276)
T ss_dssp TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECC-SSCEEEEEETTSEEEEE
T ss_pred CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeC-CCCEEEEEECCCEEEEE
Confidence 3455666544 4 456777676 8999998876542 112233 234566655555 55678888999999888
Q ss_pred EcCC---------ceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 001386 868 NARS---------SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 913 (1088)
Q Consensus 868 d~~~---------~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~ 913 (1088)
+... |.....+.. ...|.++...+++..++..+..|.++...++.
T Consensus 143 ~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 143 SVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp EGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGG
T ss_pred EhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHH
Confidence 7632 222223332 35566666556677888899999999988764
No 368
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=71.13 E-value=1.6e+02 Score=34.41 Aligned_cols=180 Identities=12% Similarity=-0.026 Sum_probs=92.5
Q ss_pred CcEEEEEcCCce--eEEEecCCCCC-eEEEEEcCCCCc-----EEEEEeCC---CeEEEEEcCC--ceeeeeeccccCCe
Q 001386 819 GVISLYIVMTFK--TILTIMPPSPT-ATSLAFNPHDNN-----VIAIGMDD---STILIYNARS--SEVISKLEGHSKRV 885 (1088)
Q Consensus 819 g~i~iwd~~~~~--~~~~~~~~~~~-i~~l~~sp~d~~-----~lasg~~d---g~i~lwd~~~--~~~~~~l~~h~~~V 885 (1088)
.+|+.|.+-+.. -...+.+.... -.....++ +++ .+++.+.+ ..+++.+... ++.. .+.....
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~-- 291 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLL-SDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQ-KINMPSD-- 291 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESS-CTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEE-ECCSCTT--
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEec-CCCceEEEEEEEEecccCceeEEEEcCCCCCCcce-EeecCCc--
Confidence 458888876542 23334433333 23455566 444 24443322 4567767653 4422 2322222
Q ss_pred eEEEECCCCCEEEEE----------eCCCcEEEEEcCCCce-----eeeeeeecCCCCccCCCCeEEEEEcCCCCEEEE-
Q 001386 886 TGLVFSDALNILVSS----------GGDAQIFVWDVDGWGI-----QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL- 949 (1088)
Q Consensus 886 ~~l~~s~dg~~las~----------s~Dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~- 949 (1088)
..+..+.++.+++.. ...+.|.+.++.++.. .....+-.+.... .+..+.+..+. ++++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~-l~~~~ 366 (711)
T 4hvt_A 292 ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANE----VFNFISTTKDR-VFLAT 366 (711)
T ss_dssp CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTE----EEEEEEECSSC-EEEEE
T ss_pred ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCC----eEEEEEEECCE-EEEEE
Confidence 123344566555532 2467788999877421 1122222222222 47788888774 4444
Q ss_pred EeCC--eEEEEEcCcce-eeee-eecCCCcCEEEEEEeeCCCE-EEEEeC---CCcEEEEEcCCCce
Q 001386 950 VHET--HLAIYEAEELT-CLKQ-WFPISSVPISQATFSCDCRM-VFTSFV---DGTLSIHEASNLEV 1008 (1088)
Q Consensus 950 ~~d~--~i~vwd~~~~~-~~~~-~~~~h~~~v~~l~fs~dg~~-l~s~s~---dg~v~vwd~~~~~~ 1008 (1088)
..++ .+.+++..++. .... +.....+.+....+++++.. +++.++ -+.+..+|+. ++.
T Consensus 367 ~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~ 432 (711)
T 4hvt_A 367 YDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HEL 432 (711)
T ss_dssp EETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCE
T ss_pred EECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcE
Confidence 4555 57888877775 2222 21111345666667777754 444443 3678888877 543
No 369
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=70.17 E-value=1.1e+02 Score=31.82 Aligned_cols=239 Identities=7% Similarity=0.091 Sum_probs=121.4
Q ss_pred CCCEEEEEe-CCcEEEEEcCCcee----EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcC---C------cee
Q 001386 809 NDAYLFSAS-GGVISLYIVMTFKT----ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR---S------SEV 874 (1088)
Q Consensus 809 dg~~l~~~~-dg~i~iwd~~~~~~----~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~---~------~~~ 874 (1088)
+..++++.+ +|.|+--.+...+. -..+. ..+.+..+.... ....|+..+..|.++-+... . |..
T Consensus 4 ~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-e~D~l~~~~~~~-t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 4 SEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMN-TKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp CCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred CCcEEEEEeCCCEEEEeEHHHhhhcCccccccC-CCCEEEEEEEEC-CCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 444555555 77777766542211 11122 223444444444 45677778888987666542 2 332
Q ss_pred eee---eccccCCeeEE-EECC--CCCEEEEEeCCCcEEEEEcCCCcee----eeeeeecCCCCccCCCCeEEEEEc-CC
Q 001386 875 ISK---LEGHSKRVTGL-VFSD--ALNILVSSGGDAQIFVWDVDGWGIQ----TCRSLQTPDGVMTLAPSETHIQFH-KD 943 (1088)
Q Consensus 875 ~~~---l~~h~~~V~~l-~~s~--dg~~las~s~Dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~fs-~d 943 (1088)
+.. +. ....|.++ ...+ ++.+|+.++.+|.++--.+..-... ....+...++ ..+..+... .+
T Consensus 82 i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-----d~lv~~~~~~~~ 155 (323)
T 1wp5_A 82 IANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-----DQVVDVHLTDGM 155 (323)
T ss_dssp GGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-----CCEEEEEEECSC
T ss_pred hhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-----CEEEEEEEeCCC
Confidence 211 22 22345554 3332 3678899999999999988642211 1112222222 234444444 44
Q ss_pred CCEEEEEeCCeEEEEEcCcceeeee-------eecCCCcCEEEEEEeeCCC-EEEEEeCCCcEEEEEcCCCceEEEeccc
Q 001386 944 QTRFLLVHETHLAIYEAEELTCLKQ-------WFPISSVPISQATFSCDCR-MVFTSFVDGTLSIHEASNLEVQCRILST 1015 (1088)
Q Consensus 944 g~~l~~~~d~~i~vwd~~~~~~~~~-------~~~~h~~~v~~l~fs~dg~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 1015 (1088)
...++.+.+|.+..+....-..... +.......|.++...+++. .|++.+..|..+.-++..-....+-...
T Consensus 156 ~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kG 235 (323)
T 1wp5_A 156 NELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRG 235 (323)
T ss_dssp SEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCC
T ss_pred CEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCC
Confidence 4555558889888887764322211 1111245677765544455 7888888998887776553222111100
Q ss_pred cccCCCC--ccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001386 1016 AYLRPTT--SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1058 (1088)
Q Consensus 1016 ~~~~~~~--~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~ 1058 (1088)
....... .++.+. .++...+ +..++..+..|.+....+.+
T Consensus 236 v~~~~~~~~~~~~l~-~~~~v~~--~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 236 VVILRELKANPHRIS-GFVVAQD--SDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp EECSCCCSSSCCCEE-EEEEECT--TCEEEEEETTSCEEEEEGGG
T ss_pred EECeeecCCCCceEE-EEEEeCC--CCeEEEEeCCCeEEEEEhhh
Confidence 0000000 011111 1222333 35677788888887777644
No 370
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=63.29 E-value=1.4e+02 Score=30.71 Aligned_cols=191 Identities=8% Similarity=0.052 Sum_probs=106.3
Q ss_pred CCCEEEEEe-CCcEEEEEcCCceeEE---------EecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-------
Q 001386 809 NDAYLFSAS-GGVISLYIVMTFKTIL---------TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS------- 871 (1088)
Q Consensus 809 dg~~l~~~~-dg~i~iwd~~~~~~~~---------~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~------- 871 (1088)
+..++++.+ +|.|+-..+...+... .+. ....+..+.... ....++..+..|.++-+....
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~-~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVN-THDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEEC-CCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 445556555 7888887765443221 122 223444444444 455777788899877766532
Q ss_pred --cee---eeeeccccCCeeEEEECC---CCCEEEEEeCCCcEEEEEcCCCcee--e-eeeeecCCCCccCCCCeEEEEE
Q 001386 872 --SEV---ISKLEGHSKRVTGLVFSD---ALNILVSSGGDAQIFVWDVDGWGIQ--T-CRSLQTPDGVMTLAPSETHIQF 940 (1088)
Q Consensus 872 --~~~---~~~l~~h~~~V~~l~~s~---dg~~las~s~Dg~i~iwd~~~~~~~--~-~~~~~~~~~~~~~~~~v~~~~f 940 (1088)
|.. ...+.. ...|.++...+ +..+|+..+..|.++.-.+..-... . ...+...++ ..+..+..
T Consensus 85 ~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~-----d~lv~~~~ 158 (312)
T 1suu_A 85 SKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDK-----DFVTSAEI 158 (312)
T ss_dssp ---CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTT-----CCEEEEEE
T ss_pred CCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCC-----CEEEEEEE
Confidence 111 111222 23455543332 4678888999999998887542211 1 112222221 24555544
Q ss_pred c-CCCCEEEEEeCCeEEEEEcCcceeeee-------eecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCc
Q 001386 941 H-KDQTRFLLVHETHLAIYEAEELTCLKQ-------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1007 (1088)
Q Consensus 941 s-~dg~~l~~~~d~~i~vwd~~~~~~~~~-------~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~ 1007 (1088)
. ++...++++.+|.+..+....-..... +.......|..+....++..|++.+..|..+..++..-.
T Consensus 159 ~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~ 233 (312)
T 1suu_A 159 VFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKIS 233 (312)
T ss_dssp ECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSC
T ss_pred eCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhc
Confidence 4 444555568889888888764222111 111125567776666667778888999999988876543
No 371
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=62.78 E-value=22 Score=39.96 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=43.8
Q ss_pred CeEEEEEcCCCCEEEEEe-------------CCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEe
Q 001386 934 SETHIQFHKDQTRFLLVH-------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 993 (1088)
Q Consensus 934 ~v~~~~fs~dg~~l~~~~-------------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s 993 (1088)
....|+|+++|.+.++.. .+.+..++..+|+............++.++||||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 467899999999888432 125777777778765543322356799999999999988775
No 372
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=58.50 E-value=2.3e+02 Score=31.64 Aligned_cols=195 Identities=12% Similarity=0.014 Sum_probs=98.3
Q ss_pred EEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe-ccCCccEEEEeeeeeCCceEEEEEecCC----eEEEEECCC
Q 001386 444 VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDG----KIKAWLYDS 518 (1088)
Q Consensus 444 v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~ 518 (1088)
+.-..+..||+. -|+.|+. ++| ..|+.+... .+|...+....|.|+..|.-++.+..++ -..+.|..+
T Consensus 328 ~~vaDVDgDG~d-EIv~Gs~-----~iD-~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~t 400 (591)
T 2zux_A 328 LSIADVDGDGKD-EIIFGSM-----AVD-HDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAAT 400 (591)
T ss_dssp CEEECCSSSSSC-EEEETTE-----EEC-TTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTT
T ss_pred CeeEeCCCCCCc-eEEEeee-----EEC-CCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCC
Confidence 444556667765 4554441 344 455555544 3788887777787766566677766652 244578888
Q ss_pred CCceEEecCC--CCceEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEE
Q 001386 519 LGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA 596 (1088)
Q Consensus 519 ~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 596 (1088)
++.+...... .+......|.|+..-+=+-+. -.+++.. |+.+.... . ...-..+-|..|...-+.-
T Consensus 401 G~vlw~~~~~~d~Gr~~~~Didp~~pG~E~w~~-------~~l~~~~-G~~i~~~~--p--~~~N~~i~WdGDl~relld 468 (591)
T 2zux_A 401 GKILWGVYAGKDVGRGMAADIDPRYPGQEVWAN-------GSLYSAK-GVKIGSGV--P--SSTNFGIWWDGDLLREQLD 468 (591)
T ss_dssp CCEEEEECCSSCCCCEEEECCCTTSSSCEEEET-------TEEECTT-SCBCSSCC--C--SCCSEEECCSSSSSCEEEE
T ss_pred CcEEEEcCCCCCCCceeEEecCCCCCceEEEec-------CceECCC-CCEecCCC--C--CCcceeEEECCCCcHhhhC
Confidence 8877665443 233334445554321111110 1245543 33322110 0 0112245666665333332
Q ss_pred eCCCcEEEEEcCCCeeeEEEeCCC-----CCCCCceEEEec--CC--CEEEEEeCCCcEEEEeCCCCCcccc
Q 001386 597 GDDHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFNK--NG--TLLAVIANENRIKILETPESNSVDA 659 (1088)
Q Consensus 597 s~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~--~~--~~l~~~~~dg~i~iwd~~~~~~~~~ 659 (1088)
.+.|.-|+...++....+...+ +.....++...- |. ..|.-..++..++||........+.
T Consensus 469 --~~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~~LrIYtt~~pt~~r~ 538 (591)
T 2zux_A 469 --SNRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSALRIYTTTIPTEHRL 538 (591)
T ss_dssp --TTEEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEEEEECCCCCCSCCC
T ss_pred --CceEEecccCCCceeEEEeecccccCCCCCCCEeeEEeccccCeeEEEEEeCCCCeEEEEeCCCCCccce
Confidence 2478889988776444443321 111223344332 32 2344344556799998765544433
No 373
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=58.26 E-value=21 Score=40.70 Aligned_cols=59 Identities=12% Similarity=0.171 Sum_probs=43.4
Q ss_pred eEEEEEcCCCCEEEEEeC-------------CeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEe
Q 001386 935 ETHIQFHKDQTRFLLVHE-------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 993 (1088)
Q Consensus 935 v~~~~fs~dg~~l~~~~d-------------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s 993 (1088)
.-.|+|+|+|+++++... +.+.+.+..+++..+-........++.++|+||++.|++.-
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 467999999997766321 24666677777766554444478999999999999998764
No 374
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=57.71 E-value=1.2e+02 Score=37.18 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=31.5
Q ss_pred CeeEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 001386 884 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR 920 (1088)
Q Consensus 884 ~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~~~~ 920 (1088)
.+.+++..++..++++.+.|+++|+|++.++++....
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 5677888889999999999999999999998765543
No 375
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=57.54 E-value=15 Score=32.18 Aligned_cols=91 Identities=19% Similarity=0.310 Sum_probs=52.0
Q ss_pred CchhHHHHHHHHHhhhhcCc-HHHHHHHHHhcCCChhHHHHHHHhcCccHHHHHHhhccCccc--cCccccchhhhHHHH
Q 001386 2 SKLNKDLVFLILQFLNEEGF-TESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKV--DDNRYSTKIYFEIRK 78 (1088)
Q Consensus 2 ~~~~~~~~~li~q~L~~~g~-~~s~~~L~~Es~~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~--~~~~~~~~~~~~l~~ 78 (1088)
+....++...|+..|.+.|| ..+...+.++.|++.+ +++.|++.++.+.+. -...+..-++..|.+
T Consensus 18 ~~~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~-----------eve~vL~~iQ~~dP~GVgArdL~ECLllQL~~ 86 (130)
T 2k9m_A 18 EGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVE-----------ELEKVRQKVLRLEPLGVCSKDVWEFLELQIEE 86 (130)
T ss_dssp CSHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHH-----------HHHHHHHHHHTSSSCCTTTSCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHH-----------HHHHHHHHHhcCCCCccccCCHHHHHHHHHhc
Confidence 34456788999999999996 4566667777675543 335566666666442 222222222233321
Q ss_pred ---------hhhhh-hhcCCCHH-HHHHHHHhhcccc
Q 001386 79 ---------QNFFE-ALDGHDIA-KALNILKKDLKDF 104 (1088)
Q Consensus 79 ---------q~~lE-ll~~~~~~-~a~~~l~~~l~~~ 104 (1088)
..+|| +|.++++. +|+.++|+ |.|.
T Consensus 87 ~~~~a~~ii~~~l~~~la~~~~~~~~~~~Ir~-L~P~ 122 (130)
T 2k9m_A 87 IYPEEEEILKKALRDLKRGKKLKPEIKGKLSR-LRLF 122 (130)
T ss_dssp SCSTTHHHHHHHHHHHHHSCCCCHHHHHHHHT-CCSC
T ss_pred CchhHHHHHHHhHHHHHHcCCHHHHHHHHHHc-CCCC
Confidence 14566 76666644 45666654 5554
No 376
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=54.40 E-value=1.9e+02 Score=29.53 Aligned_cols=151 Identities=12% Similarity=0.080 Sum_probs=81.2
Q ss_pred CCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEEEe-cCCCEEEEEeCCcEEE
Q 001386 745 GGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAYLFSASGGVISL 823 (1088)
Q Consensus 745 ~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~dg~~l~~~~dg~i~i 823 (1088)
++.+++..+.+|.++.-.+..-... ...| .....+.. . +.+..+... .+..+++..+.|.+..
T Consensus 108 ~~~~ll~~T~~G~~Krt~l~e~~~~-----------~r~G--~~~i~l~~--~-d~lv~~~~~~~~~~i~l~T~~G~~ir 171 (307)
T 1zi0_A 108 EGVKVFMATANGTVKKTVLTEFNRL-----------RTAG--KVAIKLVD--G-DELIGVDLTSGEDEVMLFSAEGKVVR 171 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGTTC-----------CTTC--EESSCCCT--T-CCEEEEEEECTTCEEEEEETTSEEEE
T ss_pred CCcEEEEEeCCCeEEEEEHHHhhcc-----------ccCC--eEEEEECC--C-CEEEEEEEeCCCCEEEEECCCCcEEE
Confidence 4566888899999988765421110 0111 12222221 2 444444443 4444555556888777
Q ss_pred EEcCCc---------eeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc---------eeeeeeccccCCe
Q 001386 824 YIVMTF---------KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---------EVISKLEGHSKRV 885 (1088)
Q Consensus 824 wd~~~~---------~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~---------~~~~~l~~h~~~V 885 (1088)
++...- ...-.+. ....|.++.... ++..+++.+..|.++-.++..- .....+..-.+.+
T Consensus 172 f~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~-~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~l 249 (307)
T 1zi0_A 172 FKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPR-GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLV 249 (307)
T ss_dssp EEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCC-SSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSE
T ss_pred EEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEec-CCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeE
Confidence 776432 1111222 335666666555 4567888899999988877431 1122233333555
Q ss_pred eEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 001386 886 TGLVFSDALNILVSSGGDAQIFVWDVDG 913 (1088)
Q Consensus 886 ~~l~~s~dg~~las~s~Dg~i~iwd~~~ 913 (1088)
..+....+...++..+.+|.+.-..++.
T Consensus 250 v~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 250 VGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp EEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 5554433445555666777766666654
No 377
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=53.55 E-value=45 Score=31.45 Aligned_cols=100 Identities=11% Similarity=0.203 Sum_probs=63.6
Q ss_pred cchhhhHHHHhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHH-HHHHhhcccccccccccccccCCChHHHHHHHHH
Q 001386 69 STKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFK-ELAQLLTLDDIRDHELLSKYYGDALSARKNMMLE 147 (1088)
Q Consensus 69 ~~~~~~~l~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~R~~l~~~ 147 (1088)
...+.-+|.+|..+=.+++|++.+|..+|++.+..-. +...++ .|..++...+. .++-+.++ |-..++++
T Consensus 109 ~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~--s~~kLr~kL~~II~~Kd~-~H~~lqnF------Sy~~~~~k 179 (235)
T 3bu8_A 109 VESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDP--TTQKLRNDLLNIIREKNL-AHPVIQNF------SYETFQQK 179 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCG--GGHHHHHHHHHHHHHTCT-TSHHHHTC------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCC--CchHHHHHHHHHHhccCc-ccHHHHhc------cHHHHHHH
Confidence 3458889999999999999999999999999877432 233333 66666665443 23333333 44567777
Q ss_pred HHhhcccCccccccccCCCcchHHHHHHHHHHHHHHHhhCCC
Q 001386 148 LKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCAN 189 (1088)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~~~~~~ 189 (1088)
+..++...+- .++. -||+.|.+-+.+.|..
T Consensus 180 i~~fve~~~~---------~a~~---FLL~~A~Kv~ks~~~~ 209 (235)
T 3bu8_A 180 MLRFLESHLD---------DAEP---YLLTMAKKALKSESAA 209 (235)
T ss_dssp HHHHHHTTSC---------CCCC---HHHHHHHHHTTTC---
T ss_pred HHHHHHHHhc---------ccch---HHHHHHHHHHhhcccc
Confidence 7777765332 2233 4566677777766544
No 378
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=50.61 E-value=3.6 Score=52.00 Aligned_cols=40 Identities=15% Similarity=0.091 Sum_probs=33.2
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccc
Q 001386 976 PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1015 (1088)
Q Consensus 976 ~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 1015 (1088)
.+.+++..++..+|++-+.|+++|||++.++.++......
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 3445566778899999999999999999999998876543
No 379
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=49.91 E-value=3.8e+02 Score=31.55 Aligned_cols=61 Identities=13% Similarity=0.084 Sum_probs=35.5
Q ss_pred cEEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCeeeEEEeCCCC-----CCCCceEEEec-CCCEEEEEe
Q 001386 580 SVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-----LPENPRICFNK-NGTLLAVIA 641 (1088)
Q Consensus 580 ~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~v~~s~-~~~~l~~~~ 641 (1088)
.|..++++|.. ..++++...+.|..++-. |+.-..+..... ...+.+++++| +...+.++.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~-G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~ 91 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPS-TETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVA 91 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETT-TTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEE
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCC-CCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEe
Confidence 78899999874 566777766776666533 333333322111 12477899998 434444443
No 380
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=49.57 E-value=38 Score=39.17 Aligned_cols=32 Identities=9% Similarity=0.004 Sum_probs=28.0
Q ss_pred eeCCCEEEEEeCCCcEEEEEcCCCceEEEecc
Q 001386 983 SCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1014 (1088)
Q Consensus 983 s~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 1014 (1088)
..+..+|++-+.|.++|+|++.++.++.....
T Consensus 228 ~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 228 LFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 44688999999999999999999998877664
No 381
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=49.57 E-value=2.3e+02 Score=29.02 Aligned_cols=198 Identities=10% Similarity=0.101 Sum_probs=104.2
Q ss_pred cCCceEEEeccccceEEEEccCCCCCCCCCCCCcccCCCCCCcceeeccCCCCCCCCeeEEE-EecCCCEEEEEeCCcEE
Q 001386 744 NGGQAIFALASNGVHLMWRWPRNDLTLSTEVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA-LSKNDAYLFSASGGVIS 822 (1088)
Q Consensus 744 ~~g~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~dg~~l~~~~dg~i~ 822 (1088)
++...+++.+.+|.++--.+..-... -..+.......+. ..+.+..+. .+.....++....|.++
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~-----------~~~~~g~~~~~lk---e~D~l~~~~~~~~~~~ll~~T~~G~~~ 71 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQ-----------GTGGKGLSSFDLN---DGDEIVIALCVNTHDYLFMISNEGKLY 71 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBC-----------CSSCCCEECCCCC---TTCCEEEEEEEETTCEEEEEETTSEEE
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhcc-----------ccCCCCceecccC---CCCEEEEEEEECCCCEEEEEECCCeEE
Confidence 34566888888998887655322110 0011111111121 233344443 34444455555578766
Q ss_pred EEEcCC---c------eeE---EEecCCCCCeEEEEEcCC--CCcEEEEEeCCCeEEEEEcCC-------ceeeeeeccc
Q 001386 823 LYIVMT---F------KTI---LTIMPPSPTATSLAFNPH--DNNVIAIGMDDSTILIYNARS-------SEVISKLEGH 881 (1088)
Q Consensus 823 iwd~~~---~------~~~---~~~~~~~~~i~~l~~sp~--d~~~lasg~~dg~i~lwd~~~-------~~~~~~l~~h 881 (1088)
-+.... . ..+ ..+. ....|.++...++ +..+|+..+..|.++...+.. |.....+..
T Consensus 72 ~~~~~~ip~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~- 149 (312)
T 1suu_A 72 LINAYEIKDSSRASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND- 149 (312)
T ss_dssp EEEGGGSCC-------CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-
T ss_pred EEEHHHCCCCCccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-
Confidence 665532 1 110 1122 2344555543321 356788889999999888743 333334443
Q ss_pred cCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCC----ceeee-eeeecCCCCccCCCCeEEEEEcCCCCEEEE-EeCCeE
Q 001386 882 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW----GIQTC-RSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHL 955 (1088)
Q Consensus 882 ~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~----~~~~~-~~~~~~~~~~~~~~~v~~~~fs~dg~~l~~-~~d~~i 955 (1088)
.+.+..+....++..++..+.+|.+..+.++.- ..... ..+...++ ..|..+..-.++..+++ +..|..
T Consensus 150 ~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~-----d~vv~~~~v~~~~~l~~vt~~G~~ 224 (312)
T 1suu_A 150 KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEG-----DLFVKVLSVKENPYLLIVSENGYG 224 (312)
T ss_dssp TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTT-----CCEEEEEECTTCSEEEEEETTSEE
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCC-----CEEEEEEEECCCCeEEEEECCCce
Confidence 456666666555667888899999988887641 11111 11222221 24566655555554444 777888
Q ss_pred EEEEcCc
Q 001386 956 AIYEAEE 962 (1088)
Q Consensus 956 ~vwd~~~ 962 (1088)
....+..
T Consensus 225 kr~~~~e 231 (312)
T 1suu_A 225 KRLNMSK 231 (312)
T ss_dssp EEEEGGG
T ss_pred EEEEHHH
Confidence 8887754
No 382
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=48.49 E-value=4e+02 Score=31.37 Aligned_cols=218 Identities=12% Similarity=0.103 Sum_probs=104.0
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccc-------cCCeeEEEECC-CC-CEEEEEeC-C-----Cc
Q 001386 841 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH-------SKRVTGLVFSD-AL-NILVSSGG-D-----AQ 905 (1088)
Q Consensus 841 ~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~h-------~~~V~~l~~s~-dg-~~las~s~-D-----g~ 905 (1088)
.|..++++|.+...+.++...|.|+.++=. |+.=..+..+ ...|.+|++.| +. .+++..+. . +.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~-G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPS-TETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETT-TTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCC-CCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 799999999655667777777777666532 3221222211 24589999998 33 44443332 0 12
Q ss_pred EEEEEcCCCceeeeeeeecC-C-CC-ccCCCCeEEEEEcCCC-CEEEEEeCCeEEEEEcC-cceeeeeee--c-------
Q 001386 906 IFVWDVDGWGIQTCRSLQTP-D-GV-MTLAPSETHIQFHKDQ-TRFLLVHETHLAIYEAE-ELTCLKQWF--P------- 971 (1088)
Q Consensus 906 i~iwd~~~~~~~~~~~~~~~-~-~~-~~~~~~v~~~~fs~dg-~~l~~~~d~~i~vwd~~-~~~~~~~~~--~------- 971 (1088)
..||.-..+... ...+... . +. ......+..++++|.. ..+.++.+..--||... .|+.-.... .
T Consensus 103 ~~l~~S~DgG~T-W~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~g~gl~~S~DgG~tW~~~~~~~~~~~~~~ 181 (737)
T 2cn3_A 103 GAILRSTDRGET-WEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRCGNGLWRSTDYGVTWSKVESFPNPGTYIY 181 (737)
T ss_dssp CEEEEESSSSSS-CEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECSTTCCEEEESSTTSSCEECTTCCCCCCCBS
T ss_pred ccEEEeCCCCCC-cccCCCCcccCCCcCcccccceEEECCCCCCEEEEeeccCCcEEEeCCCCcceecccCCCCCccccc
Confidence 455554432211 1111111 0 00 0000124578998853 44555442101234333 222222111 0
Q ss_pred -------CCCcCEEEEEEeeCC-------CEEEEEeCCCcEEEEEcCC-CceEEEeccccccCCCCccccccceEEEECC
Q 001386 972 -------ISSVPISQATFSCDC-------RMVFTSFVDGTLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHP 1036 (1088)
Q Consensus 972 -------~h~~~v~~l~fs~dg-------~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 1036 (1088)
.....+..+.++|.. ..+.++..++.-.||.... |+--..+. ..+.. ..+..+.++|
T Consensus 182 ~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~~~v~~S~DgG~tW~~~~---~~p~~-----~~~~~~~~~~ 253 (737)
T 2cn3_A 182 DPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADKNESIYRSTDGGVTWKAVP---GQPKG-----LLPHHGVLAS 253 (737)
T ss_dssp CTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCSSCCEEEESSTTSCCEECT---TCCCS-----SEEEEEEECT
T ss_pred CcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCCCccEEEEcCCCCceEECC---CCCCc-----ccceEEEECC
Confidence 012347788888743 2566566565333454443 43322221 11211 1223455777
Q ss_pred CCCCEEEEEeC-------CCcEEEEeCCCCCCCccccCCC
Q 001386 1037 LKPTQFAVGLT-------NGEVYVIEPNEPGDTWAVLPPD 1069 (1088)
Q Consensus 1037 ~d~~~l~~~~~-------dg~v~~w~l~~~~~~~~~~~~~ 1069 (1088)
++.++++..+ +..-.+|...+.+..|....+.
T Consensus 254 -~~~l~~~~~d~~g~y~~~~~g~v~~s~d~G~tW~~i~~~ 292 (737)
T 2cn3_A 254 -NGMLYITYGDTCGPYDGNGKGQVWKFNTRTGEWIDITPI 292 (737)
T ss_dssp -TSEEEEEEESSCCSSCCSCCEEEEEEETTTCCEEECCSS
T ss_pred -CCeEEEEecCCCCccccccCceEEEEeCCCCCEEEccCC
Confidence 4555554432 1445677777788889865543
No 383
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=46.24 E-value=66 Score=32.74 Aligned_cols=54 Identities=11% Similarity=0.068 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhhhcC-cHHHHHHHHH--hcCCCh-h--H--HHHHHHhcCccHHHHHHhhcc
Q 001386 6 KDLVFLILQFLNEEG-FTESAHMLER--ESRFYF-D--M--KFFEDMILDGKWEDVEQYLSS 59 (1088)
Q Consensus 6 ~~~~~li~q~L~~~g-~~~s~~~L~~--Es~~~~-~--~--~~~~~~i~~g~w~~~~~~l~~ 59 (1088)
-+.++++.+++...| +.++.+.|++ +.++.. + + ..=.-....|++++|+..+.+
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~ 126 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ 126 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC
Confidence 356777778887777 6666676665 233212 1 1 111334566777777777765
No 384
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=45.81 E-value=21 Score=27.98 Aligned_cols=29 Identities=14% Similarity=0.136 Sum_probs=26.8
Q ss_pred HHHHHHHHhhhhcCcHHHHHHHHHhcCCC
Q 001386 7 DLVFLILQFLNEEGFTESAHMLERESRFY 35 (1088)
Q Consensus 7 ~~~~li~q~L~~~g~~~s~~~L~~Es~~~ 35 (1088)
-+.-||-.||+=.||+-|+..++-|+|..
T Consensus 20 Li~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 20 LVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 36789999999999999999999999996
No 385
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=45.46 E-value=2.7e+02 Score=28.66 Aligned_cols=198 Identities=10% Similarity=0.046 Sum_probs=101.1
Q ss_pred eEEEEecCCCEEEEEeCCcEEEEEcC---------CceeEEEe-c-CCCCCeEEEEEcCC--CCcEEEEEeCCCeEEEEE
Q 001386 802 PCFALSKNDAYLFSASGGVISLYIVM---------TFKTILTI-M-PPSPTATSLAFNPH--DNNVIAIGMDDSTILIYN 868 (1088)
Q Consensus 802 ~~~~~s~dg~~l~~~~dg~i~iwd~~---------~~~~~~~~-~-~~~~~i~~l~~sp~--d~~~lasg~~dg~i~lwd 868 (1088)
..+..+....+++..+.|.+.-+... .|..+..+ . .....|.++..-++ ++.+++..+.+|.++...
T Consensus 43 ~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~ 122 (323)
T 1wp5_A 43 AMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTE 122 (323)
T ss_dssp EEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEE
T ss_pred EEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeE
Confidence 33444445556666667876555542 23322111 1 12345665433331 256788899999999988
Q ss_pred cCC--------ceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCC----ceeee-eeeecCCCCccCCCCe
Q 001386 869 ARS--------SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW----GIQTC-RSLQTPDGVMTLAPSE 935 (1088)
Q Consensus 869 ~~~--------~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~----~~~~~-~~~~~~~~~~~~~~~v 935 (1088)
+.. |.....+... +.+..+....+...++..+.+|.+..+....- ..... ..+...++ ..|
T Consensus 123 l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~-----d~V 196 (323)
T 1wp5_A 123 LKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEG-----DYI 196 (323)
T ss_dssp GGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTT-----CCE
T ss_pred HHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCC-----CEE
Confidence 742 2222233322 55666555555567778889998888887541 11111 11111111 245
Q ss_pred EEEEEcCCCC--EEEEEeCCeEEEEEcCccee-------eeee--ecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcC
Q 001386 936 THIQFHKDQT--RFLLVHETHLAIYEAEELTC-------LKQW--FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1004 (1088)
Q Consensus 936 ~~~~fs~dg~--~l~~~~d~~i~vwd~~~~~~-------~~~~--~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~ 1004 (1088)
.++..-+++. .++++..|..+..++..-.. +..+ .......+..+....++..++..+..|.+....+.
T Consensus 197 v~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 197 VSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp EEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred EEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhh
Confidence 6664434444 44447777777766654211 1111 11112245544444444555566667766555554
Q ss_pred C
Q 001386 1005 N 1005 (1088)
Q Consensus 1005 ~ 1005 (1088)
.
T Consensus 277 ~ 277 (323)
T 1wp5_A 277 D 277 (323)
T ss_dssp G
T ss_pred h
Confidence 4
No 386
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=43.39 E-value=3.9e+02 Score=29.85 Aligned_cols=168 Identities=12% Similarity=0.108 Sum_probs=87.8
Q ss_pred cCCCCEEEEEecCCCCcEEEEEEeCCCc----------------------------EEEEeCCCCceeEEeccC--Ccc-
Q 001386 439 AHVGNVNDLAFSAPCKQISVITCGDDKT----------------------------IKVWDAVTGSRTYSFEGH--GAP- 487 (1088)
Q Consensus 439 ~h~~~v~~~~~s~d~~~l~l~s~s~d~~----------------------------i~vwd~~~~~~~~~~~~~--~~~- 487 (1088)
.|-..+....|..||+. -++....+|+ +.|+|=.+|+.+.++.-. .+.
T Consensus 176 a~yt~~~V~DlDGDGka-EIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~ 254 (591)
T 2zux_A 176 AHYTQFMVYDLDGDGKA-EVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNV 254 (591)
T ss_dssp TTSCCCEEECSSSSSSC-EEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCG
T ss_pred cccCceeEEEcCCCCcc-eEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCcc
Confidence 35566777788888876 5555655555 788888888887765421 111
Q ss_pred --------------EEEEeeeeeCCceEEEEEe---cCCeEEEEECCCCCce--EEecCCC-----------CceEEEEE
Q 001386 488 --------------VYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGAR--VDYDAPG-----------LGCTRMAY 537 (1088)
Q Consensus 488 --------------v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~--~~~~~~~-----------~~v~~~~~ 537 (1088)
..+++.. +.+...++.+- .-..|..||++..+.. ..+.... +...-..+
T Consensus 255 ~~WGD~ygnR~drf~~~vayL-DG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDV 333 (591)
T 2zux_A 255 SDWGDSYGNRVDRFLAGIAYL-DGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADV 333 (591)
T ss_dssp GGGTCSSSSGGGCEEEEEECT-TSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECC
T ss_pred cccccccccccccceeeEEEC-CCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeC
Confidence 1122221 11112222221 1123677777665432 2222211 23333445
Q ss_pred ccCCCEEEEEeeCCCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCC--CEEEEEeCCC----cEEEEEcCCCe
Q 001386 538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK--DQILAAGDDH----VIKIWDMNKVQ 611 (1088)
Q Consensus 538 s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~s~dg----~i~iwd~~~~~ 611 (1088)
..||+-=++.+. .++| ..|+.+..... .|...+....|.|+. ..++.+.+++ -..+.|..+|+
T Consensus 334 DgDG~dEIv~Gs--------~~iD-~dG~~L~st~~--gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~ 402 (591)
T 2zux_A 334 DGDGKDEIIFGS--------MAVD-HDGKGMYSTGL--GHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGK 402 (591)
T ss_dssp SSSSSCEEEETT--------EEEC-TTSCEEEECSC--CCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCC
T ss_pred CCCCCceEEEee--------eEEC-CCCCEeeeCCC--CCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCc
Confidence 555553222211 1223 23444433321 234778888888874 4666666542 35568999999
Q ss_pred eeEEEeCC
Q 001386 612 LLTTIDAG 619 (1088)
Q Consensus 612 ~~~~~~~~ 619 (1088)
.+......
T Consensus 403 vlw~~~~~ 410 (591)
T 2zux_A 403 ILWGVYAG 410 (591)
T ss_dssp EEEEECCS
T ss_pred EEEEcCCC
Confidence 99887643
No 387
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=42.99 E-value=76 Score=36.08 Aligned_cols=64 Identities=14% Similarity=0.252 Sum_probs=47.9
Q ss_pred ceEEEEEccCCCEEEEEeeCC--------CCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEE
Q 001386 531 GCTRMAYSANGRRLFSCGTSK--------EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA 596 (1088)
Q Consensus 531 ~v~~~~~s~~g~~l~~~~~~~--------~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 596 (1088)
..-.|+|+|.|++++.--.+. .+...+...+..+++..+.+.+.. ...++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~--gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI--GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT--TCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC--CccCcCeeECCCCCEEEEE
Confidence 456789999999655432111 134567788888999888888876 6789999999999888764
No 388
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=42.19 E-value=1.2e+02 Score=25.84 Aligned_cols=97 Identities=11% Similarity=0.091 Sum_probs=45.6
Q ss_pred hhhcCcHHHHHHHHHhcCCChh-----HHHHHHHhcCccHHHHHHhhccCccccCccccchhhhHHHHhhhhhhhcCCCH
Q 001386 16 LNEEGFTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDI 90 (1088)
Q Consensus 16 L~~~g~~~s~~~L~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~ 90 (1088)
++.--|.++...+++=-.+..+ ...=.-....|+|++|+..+.+...++.... ...+ ..=.-+...|++
T Consensus 24 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~a~~----~lg~~~~~~~~~ 97 (126)
T 4gco_A 24 FKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI--KGYI----RKAACLVAMREW 97 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH----HHHHHHHHTTCH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh--HHHH----HHHHHHHHCCCH
Confidence 3333366666666553322221 1111333456778877777766422222210 0111 111123456777
Q ss_pred HHHHHHHHhhccccCCCCHHHHHHHHHhh
Q 001386 91 AKALNILKKDLKDFAPGNEELFKELAQLL 119 (1088)
Q Consensus 91 ~~a~~~l~~~l~~~~~~~~~~~~~l~~l~ 119 (1088)
++|+..+++-++ +.+.+++-...|..+|
T Consensus 98 ~~A~~~~~~al~-l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 98 SKAQRAYEDALQ-VDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHHH-HCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH-HCcCCHHHHHHHHHhc
Confidence 778777777443 2233444444555443
No 389
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=42.02 E-value=3.3e+02 Score=28.66 Aligned_cols=193 Identities=8% Similarity=0.084 Sum_probs=107.1
Q ss_pred cCCCEEEEEe-CCcEEEEEcCCc---------eeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEc---CC---
Q 001386 808 KNDAYLFSAS-GGVISLYIVMTF---------KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA---RS--- 871 (1088)
Q Consensus 808 ~dg~~l~~~~-dg~i~iwd~~~~---------~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~---~~--- 871 (1088)
|+..++++.+ +|.|+--.+.+. ..-..++ ....+..+.... ....|+..+..|.++-+.. ..
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~-t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVN-THDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEec-CCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 4556666666 788887665332 1222333 345565555555 5567777888887776653 22
Q ss_pred ---ceeee---eeccccCCeeEEEEC---CCCCEEEEEeCCCcEEEEEcCCCcee---eeeeeecCCCCccCCCCeEEEE
Q 001386 872 ---SEVIS---KLEGHSKRVTGLVFS---DALNILVSSGGDAQIFVWDVDGWGIQ---TCRSLQTPDGVMTLAPSETHIQ 939 (1088)
Q Consensus 872 ---~~~~~---~l~~h~~~V~~l~~s---~dg~~las~s~Dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~ 939 (1088)
|..+. .+. ....|.++..- .++.+|+.++..|.++...+..-... ....+...++ ..+..+.
T Consensus 83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~-----d~lv~v~ 156 (370)
T 3l6v_A 83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEG-----DALVGVA 156 (370)
T ss_dssp TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTT-----CCEEEEE
T ss_pred ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCC-----CEEEEEE
Confidence 22222 122 23456655432 24578999999999999887642211 1112222121 2344444
Q ss_pred E-cCCCCEEEEEeCCeEEEEEcCcceeeee-------eecCCCcCEEEEEEee---------------------------
Q 001386 940 F-HKDQTRFLLVHETHLAIYEAEELTCLKQ-------WFPISSVPISQATFSC--------------------------- 984 (1088)
Q Consensus 940 f-s~dg~~l~~~~d~~i~vwd~~~~~~~~~-------~~~~h~~~v~~l~fs~--------------------------- 984 (1088)
. ..+...++.+..|.+..+....-..... +.......|.++...+
T Consensus 157 ~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~ 236 (370)
T 3l6v_A 157 LTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPA 236 (370)
T ss_dssp EECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-------------------------
T ss_pred EeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccccccccccccccccccccc
Confidence 4 3344455557888877777654332211 1111245666665554
Q ss_pred --------CCCEEEEEeCCCcEEEEEcCCCce
Q 001386 985 --------DCRMVFTSFVDGTLSIHEASNLEV 1008 (1088)
Q Consensus 985 --------dg~~l~s~s~dg~v~vwd~~~~~~ 1008 (1088)
++..|++.+..|..+...+..-..
T Consensus 237 ~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~ 268 (370)
T 3l6v_A 237 VIDVADNGDVAYILTATENGYGKRTPLAEYPR 268 (370)
T ss_dssp ----------CEEEEEETTSEEEEEEGGGSCC
T ss_pred ccccccccCCceEEEeeCCCCEEEEEHHHhcc
Confidence 456888899999988887765443
No 390
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=40.72 E-value=4.9e+02 Score=30.20 Aligned_cols=35 Identities=11% Similarity=0.250 Sum_probs=28.3
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeec
Q 001386 842 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 879 (1088)
Q Consensus 842 i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~ 879 (1088)
|.++.+ +..++++-+.|.++|+|++.+++++....
T Consensus 224 Is~~~~---~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 224 ISCKLF---HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEE---TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred EEEecc---CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 454444 46799999999999999999999887654
No 391
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=37.89 E-value=1.2e+02 Score=25.48 Aligned_cols=90 Identities=8% Similarity=0.032 Sum_probs=0.0
Q ss_pred CCCEEEE-EeCCeEEEEEcCcceeeeeeecCCCcCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCC
Q 001386 943 DQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1021 (1088)
Q Consensus 943 dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 1021 (1088)
+|.+.+. ..||.+.+|+...+..+..--.........+.+..||.+++... ++.+ +|...+....
T Consensus 23 ~g~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl~d~-~~~~-iW~S~t~~~~------------ 88 (113)
T 3mez_B 23 TRDYSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDITDD-RLNT-VFVSNTVGQE------------ 88 (113)
T ss_dssp ETTEEEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEEECT-TSCE-EEECSCCCSS------------
T ss_pred cCCEEEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEEECC-CCCE-EEECCCcCCC------------
Q ss_pred CccccccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCCccccC
Q 001386 1022 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLP 1067 (1088)
Q Consensus 1022 ~~~~~~~~~~~~~~p~d~~~l~~~~~dg~v~~w~l~~~~~~~~~~~ 1067 (1088)
+...++--.||.+.+++ .+.|+.-|
T Consensus 89 -----------------~~~~~~L~~dGnlvly~----~~~W~s~~ 113 (113)
T 3mez_B 89 -----------------GDYVLILQINGQAVVYG----PAVWSTAA 113 (113)
T ss_dssp -----------------SCCEEEECTTSCEEEEC----SEEEESCC
T ss_pred -----------------CCEEEEEcCCceEEEec----CCEecCCC
No 392
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=37.84 E-value=18 Score=28.73 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=16.7
Q ss_pred CCchhHHHHHHHHHhhhhc
Q 001386 1 MSKLNKDLVFLILQFLNEE 19 (1088)
Q Consensus 1 ~~~~~~~~~~li~q~L~~~ 19 (1088)
|+..+++++..|+|||+..
T Consensus 15 ~~~skKrLA~sIIdFL~~s 33 (92)
T 4asv_A 15 MSASKEEIAALIVNYFSSI 33 (92)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHh
Confidence 6778999999999999864
No 393
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=36.68 E-value=1.5e+02 Score=33.43 Aligned_cols=65 Identities=14% Similarity=0.219 Sum_probs=46.7
Q ss_pred ceEEEEEccCCCEEEEEeeC--------CCCceeEEEEeCCCCceeEEEeccccccccEEEEEEeCCCCEEEEEe
Q 001386 531 GCTRMAYSANGRRLFSCGTS--------KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 597 (1088)
Q Consensus 531 ~v~~~~~s~~g~~l~~~~~~--------~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s 597 (1088)
....++|.++|.+.+..-.. +.+...++.++..+++....+.+.. ...++.++|+||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~--~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI--GCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCT--TCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCC--CccccCCEECCCCCEEEEEE
Confidence 45689999999877743211 1123468888988898877776543 35789999999999888753
No 394
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=36.38 E-value=4e+02 Score=28.00 Aligned_cols=64 Identities=6% Similarity=-0.010 Sum_probs=37.5
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCC-------CeeeEEEeCCCCCCCCceEEEecCCCEEEEEeCCCcEEEEeC
Q 001386 587 DTAKDQILAAGDDHVIKIWDMNK-------VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1088)
Q Consensus 587 ~~~~~~l~~~s~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1088)
-|+..++++.+.+|.|+--.+.. ++-+..+....+ ..+..+........++..+..|.+.-+..
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~G~~~~~~~ 74 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEE-DFIDQLWLVNTHDTLLTFTSSGKVFWLPV 74 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCC-CCEEEEEEECTTCEEEEEETTSEEEEEEG
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCC-CEEEEEEEecCCCEEEEEeCCCeEEEEEH
Confidence 46788999999999998765432 122223332222 23444444455566777777777665543
No 395
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=36.12 E-value=1.3e+02 Score=30.84 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=19.6
Q ss_pred HHHHHHHhcCccHHHHHHhhccC
Q 001386 38 MKFFEDMILDGKWEDVEQYLSSF 60 (1088)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~ 60 (1088)
+.+|++.|.+|++=||.+.+..+
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~Rtl 39 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTI 39 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhhccChHHHHHHHHHH
Confidence 68899999999999998886654
No 396
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=36.00 E-value=3.8 Score=34.09 Aligned_cols=36 Identities=8% Similarity=0.171 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCChhHHHHHHHhcCccHHHHHHhhccC
Q 001386 24 SAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60 (1088)
Q Consensus 24 s~~~L~~Es~~~~~~~~~~~~i~~g~w~~~~~~l~~~ 60 (1088)
.+..+-+|||+++++..+-..| +|+||++.+.++.+
T Consensus 37 ~~i~vi~~sGL~y~~~pmgT~I-EGe~devm~vvk~~ 72 (106)
T 1vk8_A 37 RAIEKISSWGMKYEVGPSNTTV-EGEFEEIMDRVKEL 72 (106)
T ss_dssp HHHHHHHTTCSCEEECSSCEEE-EECHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCeEeCCCccEE-EcCHHHHHHHHHHH
Confidence 3455556899999877777666 49999999988764
No 397
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=34.72 E-value=3.8e+02 Score=27.25 Aligned_cols=159 Identities=8% Similarity=0.128 Sum_probs=87.0
Q ss_pred CCCeeEEEEe---cCCCEEEEEe-CCcEEEEEcCCce-------eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEE
Q 001386 798 QEAVPCFALS---KNDAYLFSAS-GGVISLYIVMTFK-------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 866 (1088)
Q Consensus 798 ~~~v~~~~~s---~dg~~l~~~~-dg~i~iwd~~~~~-------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~i~l 866 (1088)
...|.++..- .++.+++..+ .|.++...+.... ....+... +.+..+.... +...++..+.+|.+..
T Consensus 94 ~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~-~~~~i~l~T~~G~~ir 171 (307)
T 1zi0_A 94 DERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTS-GEDEVMLFSAEGKVVR 171 (307)
T ss_dssp TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEEC-TTCEEEEEETTSEEEE
T ss_pred CCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeC-CCCEEEEECCCCcEEE
Confidence 4455555432 3455555555 8999888775322 22223333 5555555554 4556777889998888
Q ss_pred EEcCC---------ceeeeeeccccCCeeEEEECCCCCEEEEEeCCCcEEEEEcCCCcee----e-eeeeecCCCCccCC
Q 001386 867 YNARS---------SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ----T-CRSLQTPDGVMTLA 932 (1088)
Q Consensus 867 wd~~~---------~~~~~~l~~h~~~V~~l~~s~dg~~las~s~Dg~i~iwd~~~~~~~----~-~~~~~~~~~~~~~~ 932 (1088)
++... |...-.+. ....|.++...+++..|++.+..|.++-.+++.-... . ...++..+..
T Consensus 172 f~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~---- 246 (307)
T 1zi0_A 172 FKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN---- 246 (307)
T ss_dssp EEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTT----
T ss_pred EEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCC----
Confidence 87643 11222233 2345777766566677888899999988887542110 0 1111211111
Q ss_pred CCeEEEEE-cCCCCEEEEEeCCeEEEEEcCcc
Q 001386 933 PSETHIQF-HKDQTRFLLVHETHLAIYEAEEL 963 (1088)
Q Consensus 933 ~~v~~~~f-s~dg~~l~~~~d~~i~vwd~~~~ 963 (1088)
+.+..+.. .++...++.+.+|.+.-+.+..-
T Consensus 247 ~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~i 278 (307)
T 1zi0_A 247 GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI 278 (307)
T ss_dssp CSEEEEEEECTTCEEEEEESSCCEEEEEGGGS
T ss_pred CeEEEEEEeCCCceEEEEcCCCcEEEEecccc
Confidence 13333333 44444555577777666665543
No 398
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=33.83 E-value=1.4e+02 Score=30.87 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=17.9
Q ss_pred HHHHHHHhcCccH---HHHHHhhccC
Q 001386 38 MKFFEDMILDGKW---EDVEQYLSSF 60 (1088)
Q Consensus 38 ~~~~~~~i~~g~w---~~~~~~l~~~ 60 (1088)
+.+|++.|.+|+| =||.+.+..+
T Consensus 16 i~rl~~~I~~G~y~~~YEAHQ~~RTi 41 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAAQETRLV 41 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCccccHHHHHHHHH
Confidence 6889999999999 6776665543
No 399
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=33.61 E-value=2.1e+02 Score=35.81 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=31.3
Q ss_pred CEEEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEec
Q 001386 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1088)
Q Consensus 443 ~v~~~~~s~d~~~l~l~s~s~d~~i~vwd~~~~~~~~~~~ 482 (1088)
.+.+++..++.. ++++-+.|+++||||+.+++++.+..
T Consensus 239 ~~vs~~~~~~~~--~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYN--VLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTT--EEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCcc--EEEEEeCCCEEEEEECCCCCeEEeec
Confidence 445566677777 88999999999999999999987754
No 400
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=33.08 E-value=6.8e+02 Score=29.62 Aligned_cols=163 Identities=7% Similarity=0.022 Sum_probs=79.5
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecc-------ccCCeeEEEECCCC-CEEEEEeCCCc----E
Q 001386 839 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-------HSKRVTGLVFSDAL-NILVSSGGDAQ----I 906 (1088)
Q Consensus 839 ~~~i~~l~~sp~d~~~lasg~~dg~i~lwd~~~~~~~~~l~~-------h~~~V~~l~~s~dg-~~las~s~Dg~----i 906 (1088)
...|.+++++|.+...+.++...+.|...+ ..|+.=..+.. ....|.+|++.|.. ..+..+..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 468999999996667777788778776654 23332222222 12469999998843 34444432211 2
Q ss_pred EEEEc-CCCceeeeeeeecCC---CCccCCCCeEEEEEcCCC-CEEEEEe-CCeEEEEEcC-cceeeeeeec-----CCC
Q 001386 907 FVWDV-DGWGIQTCRSLQTPD---GVMTLAPSETHIQFHKDQ-TRFLLVH-ETHLAIYEAE-ELTCLKQWFP-----ISS 974 (1088)
Q Consensus 907 ~iwd~-~~~~~~~~~~~~~~~---~~~~~~~~v~~~~fs~dg-~~l~~~~-d~~i~vwd~~-~~~~~~~~~~-----~h~ 974 (1088)
.||.- +.|+. ...+.... +.......+..+++.|.. ..+.++. .+. ||... .|+.-..... ...
T Consensus 93 ~v~~S~DgG~T--W~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~~~~~~~~~~ 168 (789)
T 1sqj_A 93 AFYVSEDRGQS--FTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVTSIPDAFTNG 168 (789)
T ss_dssp EEEEESSTTSE--EEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEETTSCCCCSTT
T ss_pred EEEEECCCCCc--ceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCccCccccCCC
Confidence 34443 33331 12222110 000000124568888753 3444443 333 33333 2332222111 112
Q ss_pred cCEEEEEEee-CCCEEEEEeCC-CcEEEEEcCCCc
Q 001386 975 VPISQATFSC-DCRMVFTSFVD-GTLSIHEASNLE 1007 (1088)
Q Consensus 975 ~~v~~l~fs~-dg~~l~s~s~d-g~v~vwd~~~~~ 1007 (1088)
..+..+.+.| ++..++++..+ +.|. ...+.|+
T Consensus 169 ~~~~~i~~~p~~~~~~~~~~~~~~~v~-~S~DgG~ 202 (789)
T 1sqj_A 169 IGYTSVIFDPERNGTIYASATAPQGMY-VTHDGGV 202 (789)
T ss_dssp TCEEEEEECTTSTTCEEEEESSTTCEE-EESSTTS
T ss_pred CCeEEEEECCCCCCEEEEEEcCCCeEE-EEcCCCc
Confidence 4578888887 44566666655 4333 2444444
No 401
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=30.24 E-value=1.1e+02 Score=28.40 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=47.5
Q ss_pred HHHHHhhccCccccCccccchhhhHHHHhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccc
Q 001386 51 EDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDD 123 (1088)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~ 123 (1088)
+.|+..++.+..-.+ .+-..+.-+|.+|...=.+++|++.+|..+|++.+..-....+ .=..|..++...+
T Consensus 95 ESAl~v~~~I~~e~~-~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~-lr~kL~~II~~Kd 165 (211)
T 3bqo_A 95 ESALMIWGSIEKEHD-KLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMP-FKSKLLMIISQKD 165 (211)
T ss_dssp HHHHHHHTTSCSCCC-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCT-THHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchH-HHHHHHHHHHccC
Confidence 466777777644333 4445688899999999999999999999999997775543222 2235666666543
No 402
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=27.33 E-value=2.6e+02 Score=23.01 Aligned_cols=88 Identities=8% Similarity=-0.049 Sum_probs=46.5
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHhcCCChh-----HHHHHHHhcCccHHHHHHhhccCccccCccccchhhhHHHHhhhh
Q 001386 8 LVFLILQFLNEEGFTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFF 82 (1088)
Q Consensus 8 ~~~li~q~L~~~g~~~s~~~L~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~l 82 (1088)
...+...++...-|.++...+++=.....+ ...-.-....|+|++|+.++.+........ ..+.+.+ -.
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l----a~ 92 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF--IKGYTRK----AA 92 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC--HHHHHHH----HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--hHHHHHH----HH
Confidence 344444445555577777777765544332 222233456788888888877642222111 0111111 11
Q ss_pred hhhcCCCHHHHHHHHHhhc
Q 001386 83 EALDGHDIAKALNILKKDL 101 (1088)
Q Consensus 83 Ell~~~~~~~a~~~l~~~l 101 (1088)
-+...+++.+|+..+++-+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 2245678888888887743
No 403
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=26.78 E-value=2.1e+02 Score=24.98 Aligned_cols=16 Identities=13% Similarity=-0.068 Sum_probs=9.3
Q ss_pred hcCccHHHHHHhhccC
Q 001386 45 ILDGKWEDVEQYLSSF 60 (1088)
Q Consensus 45 i~~g~w~~~~~~l~~~ 60 (1088)
...|+|++|+..+...
T Consensus 66 ~~~g~~~~A~~~~~~a 81 (148)
T 2vgx_A 66 QAMGQYDLAIHSYSYG 81 (148)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH
Confidence 4456666666665553
No 404
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=26.54 E-value=7.3e+02 Score=27.91 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=29.1
Q ss_pred cccEEEEEEeCC--CCEEEEEeCC----CcEEEEEcCCCeeeEEEeCC
Q 001386 578 HNSVSVVHFDTA--KDQILAAGDD----HVIKIWDMNKVQLLTTIDAG 619 (1088)
Q Consensus 578 ~~~v~~~~~~~~--~~~l~~~s~d----g~i~iwd~~~~~~~~~~~~~ 619 (1088)
...+....|.|+ |-.++.+.++ .-..+.|..+|+.+......
T Consensus 367 GDa~hv~d~dP~rpGlev~~~~E~~~~~~G~~~~DA~tG~vlw~~~~~ 414 (620)
T 2zuy_A 367 GDAMHVGDLDPSRKGLEVFQVHEDATKPYGLSLRDAGTGEILWGVHAG 414 (620)
T ss_dssp CSCEEEECSCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCS
T ss_pred CceeEEEecCCCCCCCEEEEEecCCCCCCceEEEECCCCcEEEEecCc
Confidence 467777778887 4455555554 25678899999999887654
No 405
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=25.40 E-value=34 Score=24.06 Aligned_cols=15 Identities=40% Similarity=0.840 Sum_probs=12.7
Q ss_pred hHHHHHHHHHhhhhc
Q 001386 5 NKDLVFLILQFLNEE 19 (1088)
Q Consensus 5 ~~~~~~li~q~L~~~ 19 (1088)
++++++.|+|||+..
T Consensus 2 ~K~la~sIi~FL~~~ 16 (52)
T 4gof_A 2 KKRLAYAIIQFLHDQ 16 (52)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHh
Confidence 678999999999764
No 406
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=25.14 E-value=57 Score=25.15 Aligned_cols=36 Identities=25% Similarity=0.474 Sum_probs=26.7
Q ss_pred CchhHHHHHHHHHhhhhcCc-HHHHHHHHHhcCCChh
Q 001386 2 SKLNKDLVFLILQFLNEEGF-TESAHMLERESRFYFD 37 (1088)
Q Consensus 2 ~~~~~~~~~li~q~L~~~g~-~~s~~~L~~Es~~~~~ 37 (1088)
+.....+...|+..|.+.|| ..+...+.++.|++.+
T Consensus 27 ~~~~~~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~ 63 (76)
T 2k9l_A 27 EGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVE 63 (76)
T ss_dssp CTTSHHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHH
T ss_pred CHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHH
Confidence 34456789999999999997 4566667666676554
No 407
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=25.01 E-value=40 Score=19.21 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHhhhhc
Q 001386 4 LNKDLVFLILQFLNEE 19 (1088)
Q Consensus 4 ~~~~~~~li~q~L~~~ 19 (1088)
+-+||++||-||-+..
T Consensus 3 fMkDvlql~qQy~qsh 18 (26)
T 1kdl_A 3 FMKDVLRLIEQYVSSH 18 (26)
T ss_dssp HHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3478999999987654
No 408
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=24.71 E-value=88 Score=25.10 Aligned_cols=55 Identities=5% Similarity=-0.116 Sum_probs=27.5
Q ss_pred HhcCccHHHHHHhhccCccccCccccchhhhHHHHhhhhhhhcC-CCHHHHHHHHHhhcc
Q 001386 44 MILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDG-HDIAKALNILKKDLK 102 (1088)
Q Consensus 44 ~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~-~~~~~a~~~l~~~l~ 102 (1088)
....|+|++|+..+.+........ ....++...-.=+... |+.++|+..+++-+.
T Consensus 50 ~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 50 LYNLERYEEAVDCYNYVINVIEDE----YNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSCCT----TCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHccCHHHHHHHHHHHHHhCccc----chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 345678888877776642222110 0011111111223456 777778777776443
No 409
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=24.24 E-value=2.1e+02 Score=25.13 Aligned_cols=94 Identities=12% Similarity=0.128 Sum_probs=54.0
Q ss_pred cHHHHHHHHHhcCCChh-----HHHHHHHhcCccHHHHHHhhccCccccCccccchhhhHHHHhhhhhhhcCCCHHHHHH
Q 001386 21 FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALN 95 (1088)
Q Consensus 21 ~~~s~~~L~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~~~a~~ 95 (1088)
+.++...+++-.....+ ...=+-....|+|++|+.++.+...++.+.. .+.+. .=.-+...|+.++|+.
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~--~a~~~----lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP--KAHRF----LGLLYELEENTDKAVE 86 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHH----HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHH----HHHHHHHcCchHHHHH
Confidence 34455555554444332 1112335678999999999988533322211 12221 1122346799999999
Q ss_pred HHHhhccccCCCCHHHHHHHHHhhcc
Q 001386 96 ILKKDLKDFAPGNEELFKELAQLLTL 121 (1088)
Q Consensus 96 ~l~~~l~~~~~~~~~~~~~l~~l~~~ 121 (1088)
.+++-+. +.+.+++.+..|+.++..
T Consensus 87 ~~~~al~-~~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 87 CYRRSVE-LNPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHH-HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHHHHHHH
Confidence 9998554 233466777778776654
No 410
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=24.18 E-value=2.9e+02 Score=27.71 Aligned_cols=51 Identities=8% Similarity=0.120 Sum_probs=24.1
Q ss_pred HHHHHhhhhcC-cHHHHHHHHHhcCCChh-HHHH-HHHhcCccHHHHHHhhccC
Q 001386 10 FLILQFLNEEG-FTESAHMLERESRFYFD-MKFF-EDMILDGKWEDVEQYLSSF 60 (1088)
Q Consensus 10 ~li~q~L~~~g-~~~s~~~L~~Es~~~~~-~~~~-~~~i~~g~w~~~~~~l~~~ 60 (1088)
.++.+.+-.+| |..+...++.++.-.+. +..+ .-....|++++|++.+..+
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~l 91 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDRE 91 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 44455555555 55555555443111111 1111 2233456777777777654
No 411
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=23.70 E-value=1.9e+02 Score=28.18 Aligned_cols=109 Identities=7% Similarity=0.055 Sum_probs=55.6
Q ss_pred HHHHHHHHhhhhcC-cHHHHHHHHHhcCCChh-----HHHHHHHhcCccHHHHHHhhccCccccCccccchhhhHHHHhh
Q 001386 7 DLVFLILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQN 80 (1088)
Q Consensus 7 ~~~~li~q~L~~~g-~~~s~~~L~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~ 80 (1088)
|+.....+.+...| |.++...+++=-....+ ...-.-....|++++|+.++......+.+. ......+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~l 80 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNAT---KAKSADFEYY 80 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTT---TCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCch---hHHHHHHHHH
Confidence 44344444554555 77777766653332211 233345667899999999887753322111 1211112222
Q ss_pred hhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhh
Q 001386 81 FFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLL 119 (1088)
Q Consensus 81 ~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~ 119 (1088)
-.-+...|+.++|+..+++-+.-. +.+...+..|+.+.
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 118 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYF 118 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHH
Confidence 222345688888888888754422 22344444555444
No 412
>2ibo_A Hypothetical protein SP2199; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Streptococcus pneumoniae TIGR4} SCOP: d.58.48.1
Probab=23.20 E-value=7.2 Score=32.44 Aligned_cols=35 Identities=11% Similarity=0.219 Sum_probs=26.8
Q ss_pred HHHHHHhcCCChhHHHHHHHhcCccHHHHHHhhccC
Q 001386 25 AHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60 (1088)
Q Consensus 25 ~~~L~~Es~~~~~~~~~~~~i~~g~w~~~~~~l~~~ 60 (1088)
+..+-+|||+++++..+-..|. |+||++.+.++.+
T Consensus 25 ~i~vl~~sGl~y~~~pmgT~IE-Ge~devm~vv~~~ 59 (104)
T 2ibo_A 25 VIAYLQTQEVTMVVTPFETVLE-GEFDELMRILKEA 59 (104)
T ss_dssp HHHHHHHSSSEEEECSSCEEEE-EEHHHHHHHHHHH
T ss_pred HHHHHHHcCCCeEecCCccEEE-cCHHHHHHHHHHH
Confidence 3444458999998777766664 9999999988764
No 413
>1lxj_A YBL001C, hypothetical 11.5KDA protein in HTB2-NTH2 interge region; hypothetical protein, HTB2-NTH2 intergenic region; 1.80A {Saccharomyces cerevisiae} SCOP: d.58.48.1
Probab=22.34 E-value=7.5 Score=32.40 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHhcCccHHHHHHhhccC
Q 001386 22 TESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60 (1088)
Q Consensus 22 ~~s~~~L~~Es~~~~~~~~~~~~i~~g~w~~~~~~l~~~ 60 (1088)
-..+..+-+|||+++++..+-..| +|+||++.+.++.+
T Consensus 26 Va~~i~~i~~sGl~y~~~pm~T~I-EGe~devm~vv~~~ 63 (104)
T 1lxj_A 26 VALIEKKIRESPLKSTLHSAGTTI-EGPWDDVMGLIGEI 63 (104)
T ss_dssp HHHHHHHHHTSSSEEEEETTEEEE-EEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEeCCCccEE-EcCHHHHHHHHHHH
Confidence 344555666899999877776666 49999999987754
No 414
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=22.26 E-value=1e+03 Score=28.07 Aligned_cols=263 Identities=8% Similarity=0.042 Sum_probs=117.5
Q ss_pred CCCeeEEEEecC--CCEEEEEeCCcEEEEEcCCceeEEEecCC-------CCCeEEEEEcCCCCcEEEEEeCCCe----E
Q 001386 798 QEAVPCFALSKN--DAYLFSASGGVISLYIVMTFKTILTIMPP-------SPTATSLAFNPHDNNVIAIGMDDST----I 864 (1088)
Q Consensus 798 ~~~v~~~~~s~d--g~~l~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~l~~sp~d~~~lasg~~dg~----i 864 (1088)
...|.+++++|. +.+++.+..+.|...+ ..|+.-..+..+ ...+.+++++|.+...+.++..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 468999999985 3344443355554443 233333333322 2469999999844455555443211 2
Q ss_pred EEEE-cCCceeeeeecc--c-----c--CCeeEEEECCC-CCEEEEEeCCCcEEEEEcCC-CceeeeeeeecCCCCccCC
Q 001386 865 LIYN-ARSSEVISKLEG--H-----S--KRVTGLVFSDA-LNILVSSGGDAQIFVWDVDG-WGIQTCRSLQTPDGVMTLA 932 (1088)
Q Consensus 865 ~lwd-~~~~~~~~~l~~--h-----~--~~V~~l~~s~d-g~~las~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~ 932 (1088)
.||- ...|+-=..+.. . . ..+..+++.|. ...+..+...+. ||.... |+ ....+..........
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~--TW~~~~~~~~~~~~~ 168 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRAK--TWTNVTSIPDAFTNG 168 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTTS--SCEEETTSCCCCSTT
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCCc--ccCCCccCccccCCC
Confidence 3333 233322111110 0 1 13566888874 345555553443 343332 22 112222111000001
Q ss_pred CCeEEEEEcCC-CCEEEE-EeC-CeEEEEEcCcceeeeeeecCCCc-----------------CEEEEEEeeCCCEEEEE
Q 001386 933 PSETHIQFHKD-QTRFLL-VHE-THLAIYEAEELTCLKQWFPISSV-----------------PISQATFSCDCRMVFTS 992 (1088)
Q Consensus 933 ~~v~~~~fs~d-g~~l~~-~~d-~~i~vwd~~~~~~~~~~~~~h~~-----------------~v~~l~fs~dg~~l~s~ 992 (1088)
..+..+.+.|. +..+.+ ..+ +.|+ .....|+.-......+.. .+..+++.|+...|+.+
T Consensus 169 ~~~~~i~~~p~~~~~~~~~~~~~~~v~-~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~ 247 (789)
T 1sqj_A 169 IGYTSVIFDPERNGTIYASATAPQGMY-VTHDGGVSWEPVAGQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVT 247 (789)
T ss_dssp TCEEEEEECTTSTTCEEEEESSTTCEE-EESSTTSSCEECTTCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEE
T ss_pred CCeEEEEECCCCCCEEEEEEcCCCeEE-EEcCCCcCcccCCCCcCccccccccccCcccccccccceeEEcCCCCeEEEE
Confidence 25788999884 344444 433 3332 233333322221111111 12677888844444433
Q ss_pred e---------CCCcEEEEEcCCCceEEEeccccc--cCCCCccccc---cceEEEECCCCCCEEEEEeCCC-----cEEE
Q 001386 993 F---------VDGTLSIHEASNLEVQCRILSTAY--LRPTTSCLHV---YPHAIAAHPLKPTQFAVGLTNG-----EVYV 1053 (1088)
Q Consensus 993 s---------~dg~v~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~p~d~~~l~~~~~dg-----~v~~ 1053 (1088)
. ..+.|..-+ +.|+--..+..... .+........ ....++++|.+++.+++++.+. ...+
T Consensus 248 ~~~~~~p~~g~~g~l~~S~-DgG~tW~~~~~~~~~~~p~~~~~~~~~~~g~~~lav~p~~~~~v~~~~~~~~~~~~~~~l 326 (789)
T 1sqj_A 248 YADYPGPWGVTFGEVWRQN-RTSGAWDDITPRVGNSSPAPYNNQTFPAGGFCGLSVDATNPNRLVVITLDRDPGPALDSI 326 (789)
T ss_dssp EESSCSSSCCCCCCEEEEE-TTTCCEEECCCCTTTEESCCCSSCCSCCCEEEEEEEETTEEEEEEEEEECCCSCSSCCCE
T ss_pred EecCCCCCCCCCceEEEEe-CCCCceEECcCCCCccccccccccccccCceEEEEECCCCCCEEEEEEeccCCCcccccE
Confidence 2 344444332 23332222221000 0000000011 2256888886666677766542 2556
Q ss_pred EeCCCCCCCccccC
Q 001386 1054 IEPNEPGDTWAVLP 1067 (1088)
Q Consensus 1054 w~l~~~~~~~~~~~ 1067 (1088)
|.-.+.+.+|....
T Consensus 327 ~~S~DgG~tW~~~~ 340 (789)
T 1sqj_A 327 YLSTDAGATWKDVT 340 (789)
T ss_dssp EEESSTTSSEEEHH
T ss_pred EEecCCCCCceeCc
Confidence 77777888887554
No 415
>1yqh_A DUF77, IG hypothetical 16092; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus cereus atcc 14579} SCOP: d.58.48.1
Probab=22.18 E-value=8.7 Score=32.25 Aligned_cols=36 Identities=11% Similarity=0.207 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCChhHHHHHHHhcCccHHHHHHhhccC
Q 001386 24 SAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60 (1088)
Q Consensus 24 s~~~L~~Es~~~~~~~~~~~~i~~g~w~~~~~~l~~~ 60 (1088)
.+..+-+|||+++++..+-..| +|+||++.+.++.+
T Consensus 29 ~~i~vl~~sGl~y~~~pmgT~I-EGe~devm~vv~~~ 64 (109)
T 1yqh_A 29 KAIEVVQQSGVRYEVGAMETTL-EGELDVLLDVVKRA 64 (109)
T ss_dssp HHHHHHHHSCSEEEECSSCEEE-EECHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCeEecCCccEE-EcCHHHHHHHHHHH
Confidence 3444456899999877776666 49999999988754
No 416
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=20.66 E-value=1.2e+02 Score=22.31 Aligned_cols=31 Identities=19% Similarity=0.090 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHhhhhcCcHHHHHHHHHhcCC
Q 001386 4 LNKDLVFLILQFLNEEGFTESAHMLERESRF 34 (1088)
Q Consensus 4 ~~~~~~~li~q~L~~~g~~~s~~~L~~Es~~ 34 (1088)
.++.+.|||+--|.-=||.+.|..|..+.+.
T Consensus 15 ~Re~LYrLIISQL~YDG~~~iA~~L~~~v~~ 45 (66)
T 2xz2_A 15 NREILYRLMISQLMYDGLEKFAMELSMLVKA 45 (66)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhcCC
Confidence 3677999999999999999999999988875
No 417
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=20.63 E-value=3e+02 Score=23.49 Aligned_cols=14 Identities=14% Similarity=-0.121 Sum_probs=6.8
Q ss_pred cCCCHHHHHHHHHh
Q 001386 86 DGHDIAKALNILKK 99 (1088)
Q Consensus 86 ~~~~~~~a~~~l~~ 99 (1088)
..|++++|+..+++
T Consensus 64 ~~g~~~~A~~~~~~ 77 (142)
T 2xcb_A 64 SLGLYEQALQSYSY 77 (142)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHH
Confidence 34445555555544
No 418
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=20.22 E-value=66 Score=25.25 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhhhcCcHHHHHHHHHhcCCChh
Q 001386 6 KDLVFLILQFLNEEGFTESAHMLERESRFYFD 37 (1088)
Q Consensus 6 ~~~~~li~q~L~~~g~~~s~~~L~~Es~~~~~ 37 (1088)
.++.+-|+++|++.| .++..|-+|-|++-.
T Consensus 16 ~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~ 45 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEG--ATAAQLTRQLNMEKR 45 (82)
T ss_dssp HHHHHHHHHHHSSST--EEHHHHHHHSSSCHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHCcCHH
Confidence 467888899999999 889999999999764
Done!