Your job contains 1 sequence.
>001387
MSIWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYG
RIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIGRPTDNGQI
GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVL
YQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYC
SANAFKAIPIRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKEKVTGLKIELLGET
SIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLE
RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVS
FISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELR
NEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPI
GENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCAL
GDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKL
LYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICH
QEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDS
NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAIN
QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGA
IEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLG
EFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVI
KGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKR
VEELTRLH
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001387
(1088 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2115909 - symbol:DDB1A "damaged DNA binding pr... 5144 0. 1
TAIR|locus:2127368 - symbol:DDB1B "damaged DNA binding pr... 4980 0. 1
UNIPROTKB|E2R9E3 - symbol:DDB1 "Uncharacterized protein" ... 2083 1.2e-312 2
UNIPROTKB|A1A4K3 - symbol:DDB1 "DNA damage-binding protei... 2081 2.0e-312 2
MGI|MGI:1202384 - symbol:Ddb1 "damage specific DNA bindin... 2081 2.0e-312 2
UNIPROTKB|F1RIE2 - symbol:DDB1 "Uncharacterized protein" ... 2078 4.2e-312 2
UNIPROTKB|Q16531 - symbol:DDB1 "DNA damage-binding protei... 2077 5.4e-312 2
UNIPROTKB|Q6P6Z0 - symbol:ddb1 "DNA damage-binding protei... 2078 1.1e-311 2
UNIPROTKB|Q5R649 - symbol:DDB1 "DNA damage-binding protei... 2078 1.4e-311 2
UNIPROTKB|P33194 - symbol:DDB1 "DNA damage-binding protei... 2071 2.3e-311 2
UNIPROTKB|Q805F9 - symbol:DDB1 "DNA damage-binding protei... 2069 3.8e-311 2
ZFIN|ZDB-GENE-040426-1272 - symbol:ddb1 "damage specific ... 2057 6.1e-311 2
RGD|621889 - symbol:Ddb1 "damage-specific DNA binding pro... 2056 2.1e-308 2
UNIPROTKB|F1P4I8 - symbol:DDB1 "DNA damage-binding protei... 2022 3.5e-306 2
UNIPROTKB|F1NVV2 - symbol:DDB1 "DNA damage-binding protei... 2022 6.6e-305 2
UNIPROTKB|F1NVV3 - symbol:DDB1 "DNA damage-binding protei... 2022 9.6e-304 2
UNIPROTKB|J9NVR7 - symbol:DDB1 "Uncharacterized protein" ... 2083 8.1e-298 2
UNIPROTKB|F5GY55 - symbol:DDB1 "Uncharacterized protein" ... 2077 1.2e-296 2
FB|FBgn0260962 - symbol:pic "piccolo" species:7227 "Droso... 1856 2.1e-268 2
DICTYBASE|DDB_G0286013 - symbol:repE "UV-damaged DNA bind... 835 7.0e-267 4
WB|WBGene00010890 - symbol:ddb-1 species:6239 "Caenorhabd... 1119 2.7e-167 2
UNIPROTKB|Q21554 - symbol:ddb-1 "DNA damage-binding prote... 1119 2.7e-167 2
UNIPROTKB|F1M680 - symbol:Ddb1 "DNA damage-binding protei... 922 6.2e-142 2
ASPGD|ASPL0000052925 - symbol:ddbA species:162425 "Emeric... 937 3.8e-114 2
UNIPROTKB|B4DG00 - symbol:DDB1 "cDNA FLJ52436, highly sim... 940 7.8e-114 2
UNIPROTKB|G4N4E2 - symbol:MGG_16867 "Uncharacterized prot... 471 1.4e-79 3
UNIPROTKB|F5H6C5 - symbol:DDB1 "DNA damage-binding protei... 760 2.3e-75 1
UNIPROTKB|F5H581 - symbol:DDB1 "DNA damage-binding protei... 686 1.8e-69 2
UNIPROTKB|F5H775 - symbol:DDB1 "DNA damage-binding protei... 661 3.4e-64 1
UNIPROTKB|F5H0Y5 - symbol:DDB1 "DNA damage-binding protei... 626 2.2e-60 1
TAIR|locus:2100616 - symbol:SAP130a "spliceosome-associat... 345 2.6e-58 4
TAIR|locus:2100646 - symbol:SAP130b "spliceosome-associat... 345 2.6e-58 4
POMBASE|SPAC17H9.10c - symbol:ddb1 "damaged DNA binding p... 615 8.3e-57 1
DICTYBASE|DDB_G0282569 - symbol:sf3b3 "splicing factor 3B... 326 1.2e-54 4
ASPGD|ASPL0000031473 - symbol:AN5452 species:162425 "Emer... 343 2.0e-53 5
UNIPROTKB|E2RR33 - symbol:SF3B3 "Uncharacterized protein"... 337 1.1e-50 4
UNIPROTKB|A0JN52 - symbol:SF3B3 "Splicing factor 3B subun... 337 1.4e-50 4
UNIPROTKB|Q15393 - symbol:SF3B3 "Splicing factor 3B subun... 337 1.4e-50 4
MGI|MGI:1289341 - symbol:Sf3b3 "splicing factor 3b, subun... 337 1.4e-50 4
FB|FBgn0035162 - symbol:CG13900 species:7227 "Drosophila ... 282 1.7e-50 4
ZFIN|ZDB-GENE-040426-2901 - symbol:sf3b3 "splicing factor... 338 1.8e-50 4
UNIPROTKB|F5H2L3 - symbol:DDB1 "DNA damage-binding protei... 523 3.0e-49 1
UNIPROTKB|F1P529 - symbol:SF3B3 "Uncharacterized protein"... 333 3.1e-48 4
WB|WBGene00019323 - symbol:teg-4 species:6239 "Caenorhabd... 342 1.1e-46 3
UNIPROTKB|E9PT66 - symbol:Sf3b3 "Protein Sf3b3" species:1... 337 1.8e-46 2
POMBASE|SPAPJ698.03c - symbol:prp12 "U2 snRNP-associated ... 322 7.9e-46 4
RGD|1311636 - symbol:Sf3b3 "splicing factor 3b, subunit 3... 337 1.1e-43 3
GENEDB_PFALCIPARUM|PFL1680w - symbol:PFL1680w "splicing f... 280 1.2e-42 4
UNIPROTKB|Q8I574 - symbol:PFL1680w "Splicing factor 3b, s... 280 1.2e-42 4
UNIPROTKB|F5GZ34 - symbol:DDB1 "DNA damage-binding protei... 455 6.0e-42 1
UNIPROTKB|F5GZY8 - symbol:DDB1 "DNA damage-binding protei... 453 9.9e-42 1
TAIR|locus:2081576 - symbol:AT3G11960 species:3702 "Arabi... 222 6.6e-31 4
UNIPROTKB|F5H198 - symbol:DDB1 "DNA damage-binding protei... 203 1.8e-29 2
POMBASE|SPCC11E10.08 - symbol:rik1 "silencing protein Rik... 255 1.7e-26 3
WB|WBGene00022301 - symbol:cpsf-1 species:6239 "Caenorhab... 214 4.7e-26 4
UNIPROTKB|Q9N4C2 - symbol:cpsf-1 "Probable cleavage and p... 214 4.7e-26 4
ZFIN|ZDB-GENE-040709-2 - symbol:cpsf1 "cleavage and polya... 226 2.3e-25 7
UNIPROTKB|Q10570 - symbol:CPSF1 "Cleavage and polyadenyla... 234 3.0e-25 7
UNIPROTKB|F5GYG8 - symbol:DDB1 "DNA damage-binding protei... 292 1.7e-24 1
MGI|MGI:2679722 - symbol:Cpsf1 "cleavage and polyadenylat... 230 2.0e-24 7
UNIPROTKB|Q10569 - symbol:CPSF1 "Cleavage and polyadenyla... 230 7.9e-24 7
DICTYBASE|DDB_G0281585 - symbol:cpsf1 "cleavage and polya... 228 1.4e-23 7
TAIR|locus:2153122 - symbol:CPSF160 "cleavage and polyade... 208 3.5e-23 4
FB|FBgn0024698 - symbol:Cpsf160 "Cleavage and polyadenyla... 248 3.6e-23 7
UNIPROTKB|F1PC28 - symbol:CPSF1 "Uncharacterized protein"... 229 2.1e-22 6
UNIPROTKB|F1RSN8 - symbol:CPSF1 "Uncharacterized protein"... 229 5.8e-22 6
CGD|CAL0004426 - symbol:orf19.5391 species:5476 "Candida ... 179 1.8e-21 3
UNIPROTKB|F8WF81 - symbol:DDB1 "DNA damage-binding protei... 256 1.2e-20 1
RGD|1306406 - symbol:Cpsf1 "cleavage and polyadenylation ... 161 1.5e-18 8
UNIPROTKB|J9P418 - symbol:CPSF1 "Uncharacterized protein"... 229 3.5e-17 4
UNIPROTKB|F1NZF7 - symbol:SF3B3 "Uncharacterized protein"... 234 4.9e-16 1
UNIPROTKB|K7GNU1 - symbol:CPSF1 "Uncharacterized protein"... 229 1.6e-15 2
UNIPROTKB|E1C725 - symbol:DDB1 "DNA damage-binding protei... 188 2.1e-13 1
POMBASE|SPBC1709.08 - symbol:cft1 "cleavage factor one Cf... 140 2.0e-12 6
SGD|S000004513 - symbol:RSE1 "Protein involved in pre-mRN... 120 6.3e-11 4
ASPGD|ASPL0000050546 - symbol:AN1413 species:162425 "Emer... 168 2.4e-09 6
UNIPROTKB|F1S419 - symbol:LOC100512659 "Uncharacterized p... 164 7.5e-09 1
CGD|CAL0004251 - symbol:orf19.2760 species:5476 "Candida ... 86 1.4e-07 6
UNIPROTKB|Q5AFT3 - symbol:CFT1 "Protein CFT1" species:237... 86 1.4e-07 6
>TAIR|locus:2115909 [details] [associations]
symbol:DDB1A "damaged DNA binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IEA;IDA;IPI] [GO:0010100
"negative regulation of photomorphogenesis" evidence=IGI;RCA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IPI]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0000911 "cytokinesis by cell plate
formation" evidence=RCA] [GO:0003002 "regionalization"
evidence=RCA] [GO:0006281 "DNA repair" evidence=RCA] [GO:0006486
"protein glycosylation" evidence=RCA] [GO:0007155 "cell adhesion"
evidence=RCA] [GO:0008284 "positive regulation of cell
proliferation" evidence=RCA] [GO:0009630 "gravitropism"
evidence=RCA] [GO:0009639 "response to red or far red light"
evidence=RCA] [GO:0010090 "trichome morphogenesis" evidence=RCA]
[GO:0033043 "regulation of organelle organization" evidence=RCA]
[GO:0045010 "actin nucleation" evidence=RCA] [GO:0048449 "floral
organ formation" evidence=RCA] [GO:0048608 "reproductive structure
development" evidence=RCA] InterPro:IPR017986 InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005829
GO:GO:0005634 GO:GO:0045892 EMBL:CP002687 GenomeReviews:CT486007_GR
Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0003677 GO:GO:0006281
GO:GO:0016567 GO:GO:0009585 EMBL:AL161503 GO:GO:0080008
GO:GO:0010100 EMBL:AY074257 EMBL:BT001905 EMBL:AK230366
IPI:IPI00548104 PIR:B85068 RefSeq:NP_192451.1 UniGene:At.32663
UniGene:At.47587 ProteinModelPortal:Q9M0V3 DIP:DIP-40455N
IntAct:Q9M0V3 STRING:Q9M0V3 PaxDb:Q9M0V3 PRIDE:Q9M0V3 ProMEX:Q9M0V3
EnsemblPlants:AT4G05420.1 GeneID:825890 KEGG:ath:AT4G05420
GeneFarm:4660 TAIR:At4g05420 eggNOG:NOG247734 HOGENOM:HOG000007241
InParanoid:Q9M0V3 KO:K10610 OMA:CALGDGS PhylomeDB:Q9M0V3
ProtClustDB:CLSN2685347 Genevestigator:Q9M0V3 GermOnline:AT4G05420
Uniprot:Q9M0V3
Length = 1088
Score = 5144 (1815.8 bits), Expect = 0., P = 0.
Identities = 981/1088 (90%), Positives = 1034/1088 (95%)
Query: 1 MSIWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYG 60
MS WNYVVTAHKPT+VTHSCVGNFTSPQELNLI+AKCTRIEIHLLTPQGLQPMLDVPIYG
Sbjct: 1 MSSWNYVVTAHKPTSVTHSCVGNFTSPQELNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 60
Query: 61 RIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIGRPTDNGQI 120
RIATLELFRPHGEAQDFLFIATERYKFCVLQWD ESSELITRAMGDVSDRIGRPTDNGQI
Sbjct: 61 RIATLELFRPHGEAQDFLFIATERYKFCVLQWDPESSELITRAMGDVSDRIGRPTDNGQI 120
Query: 121 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVL 180
GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL+GCAKPTI VL
Sbjct: 121 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLFGCAKPTIAVL 180
Query: 181 YQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYC 240
YQDNKDARHVKTYEV+LKDKDFVEGPWSQN+LDNGADLLIPVPPPLCGVLIIGEETIVYC
Sbjct: 181 YQDNKDARHVKTYEVSLKDKDFVEGPWSQNSLDNGADLLIPVPPPLCGVLIIGEETIVYC 240
Query: 241 SANAFKAIPIRPSITKAYGRVDADGSRYXXXXXXXXXXXXVITHEKEKVTGLKIELLGET 300
SA+AFKAIPIRPSITKAYGRVD DGSRY VITHEKEKVTGLKIELLGET
Sbjct: 241 SASAFKAIPIRPSITKAYGRVDVDGSRYLLGDHAGMIHLLVITHEKEKVTGLKIELLGET 300
Query: 301 SIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLE 360
SIASTISYLDNAVV++GSSYGDSQL+KLNL PDAKGSYVEVLERY+NLGPIVDFCVVDLE
Sbjct: 301 SIASTISYLDNAVVFVGSSYGDSQLVKLNLHPDAKGSYVEVLERYINLGPIVDFCVVDLE 360
Query: 361 RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVS 420
RQGQGQVVTCSGA+KDGSLR+VRNGIGINEQASVELQGIKGMWSL+SS D+ FDTFLVVS
Sbjct: 361 RQGQGQVVTCSGAFKDGSLRVVRNGIGINEQASVELQGIKGMWSLKSSIDEAFDTFLVVS 420
Query: 421 FISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELR 480
FISETRILAMNL GF SQ QTLFCHDA+YNQLVQVTS SVRLVSST+RELR
Sbjct: 421 FISETRILAMNLEDELEETEIEGFLSQVQTLFCHDAVYNQLVQVTSNSVRLVSSTTRELR 480
Query: 481 NEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPI 540
+EW +P G++VNVATANASQVLLATGGGHLVYLEIGDG LTEV+HA LEYE+SCLDINPI
Sbjct: 481 DEWHAPAGFTVNVATANASQVLLATGGGHLVYLEIGDGKLTEVQHALLEYEVSCLDINPI 540
Query: 541 GENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCAL 600
G+NP+YSQ+AAVGMWTDISVRIFSLP+L LITKE LGGEIIPRSVLLCAFEGISYLLCAL
Sbjct: 541 GDNPNYSQLAAVGMWTDISVRIFSLPELTLITKEQLGGEIIPRSVLLCAFEGISYLLCAL 600
Query: 601 GDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKL 660
GDGHLLNF ++ TG+L DRKKVSLGTQPITLRTFSSK+ THVFAASDRPTVIYSSNKKL
Sbjct: 601 GDGHLLNFQMDTTTGQLKDRKKVSLGTQPITLRTFSSKSATHVFAASDRPTVIYSSNKKL 660
Query: 661 LYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICH 720
LYSNVNLKEVSHMCPFNSAAFPDSLAIA+EGELTIGTIDDIQKLHIR+IPLGEH RRICH
Sbjct: 661 LYSNVNLKEVSHMCPFNSAAFPDSLAIAREGELTIGTIDDIQKLHIRTIPLGEHARRICH 720
Query: 721 QEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDS 780
QEQ+RTF ICSL NQS +EESEMHFVRLLDDQTFEF+STYPLD+FEYGCSILSCSF++D
Sbjct: 721 QEQTRTFGICSLGNQSNSEESEMHFVRLLDDQTFEFMSTYPLDSFEYGCSILSCSFTEDK 780
Query: 781 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAIN 840
NVYYCVGTAYVLPEENEPTKGRILVFIVEDG+LQLIAEKETKGAVYSLNAFNGKLLAAIN
Sbjct: 781 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGRLQLIAEKETKGAVYSLNAFNGKLLAAIN 840
Query: 841 QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGA 900
QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLL+YKHEEGA
Sbjct: 841 QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLLYKHEEGA 900
Query: 901 IEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLG 960
IEERARDYNANWMSAVEILDDDIYLGAENNFNL TV+KNSEGATDEERGRLEVVGEYHLG
Sbjct: 901 IEERARDYNANWMSAVEILDDDIYLGAENNFNLLTVKKNSEGATDEERGRLEVVGEYHLG 960
Query: 961 EFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVI 1020
EFVNRFRHGSLVMRLPDS++GQIPTVIFGTVNGVIGVIASLP EQY FLEKLQ++LRKVI
Sbjct: 961 EFVNRFRHGSLVMRLPDSEIGQIPTVIFGTVNGVIGVIASLPQEQYTFLEKLQSSLRKVI 1020
Query: 1021 KGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKR 1080
KGVGGL+HEQWRSFNNEK+T +A+NFLDGDLIESFLDLSR +M++ISK+MNV VEELCKR
Sbjct: 1021 KGVGGLSHEQWRSFNNEKRTAEARNFLDGDLIESFLDLSRNKMEDISKSMNVQVEELCKR 1080
Query: 1081 VEELTRLH 1088
VEELTRLH
Sbjct: 1081 VEELTRLH 1088
>TAIR|locus:2127368 [details] [associations]
symbol:DDB1B "damaged DNA binding protein 1B"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0009793 "embryo
development ending in seed dormancy" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0005829 "cytosol" evidence=RCA]
[GO:0006281 "DNA repair" evidence=RCA] [GO:0007062 "sister
chromatid cohesion" evidence=RCA] [GO:0009880 "embryonic pattern
specification" evidence=RCA] [GO:0010072 "primary shoot apical
meristem specification" evidence=RCA] [GO:0010100 "negative
regulation of photomorphogenesis" evidence=RCA] [GO:0010162 "seed
dormancy process" evidence=RCA] [GO:0010431 "seed maturation"
evidence=RCA] [GO:0010564 "regulation of cell cycle process"
evidence=RCA] [GO:0045595 "regulation of cell differentiation"
evidence=RCA] [GO:0048366 "leaf development" evidence=RCA]
[GO:0048608 "reproductive structure development" evidence=RCA]
[GO:0048825 "cotyledon development" evidence=RCA] [GO:0051301 "cell
division" evidence=RCA] InterPro:IPR017986 InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR Gene3D:2.130.10.10
SUPFAM:SSF50978 EMBL:AL161554 GO:GO:0003677 GO:GO:0006281
GO:GO:0009793 GO:GO:0016567 GO:GO:0009585 EMBL:AL021960
UniGene:At.32663 eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610
ProtClustDB:CLSN2685347 EMBL:AK220648 EMBL:AK229805 IPI:IPI00536598
PIR:T04941 RefSeq:NP_193842.1 ProteinModelPortal:O49552 SMR:O49552
DIP:DIP-46981N IntAct:O49552 STRING:O49552 PaxDb:O49552
PRIDE:O49552 EnsemblPlants:AT4G21100.1 GeneID:827857
KEGG:ath:AT4G21100 GeneFarm:4661 TAIR:At4g21100 InParanoid:O49552
OMA:DRPAVIY PhylomeDB:O49552 Genevestigator:O49552
GermOnline:AT4G21100 Uniprot:O49552
Length = 1088
Score = 4980 (1758.1 bits), Expect = 0., P = 0.
Identities = 948/1088 (87%), Positives = 1014/1088 (93%)
Query: 1 MSIWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYG 60
MS+WNY VTA KPT VTHSCVGNFTSPQELNLI+AK TRIEIHLL+PQGLQ +LDVP+YG
Sbjct: 1 MSVWNYAVTAQKPTCVTHSCVGNFTSPQELNLIVAKSTRIEIHLLSPQGLQTILDVPLYG 60
Query: 61 RIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIGRPTDNGQI 120
RIAT+ELFRPHGEAQDFLF+ATERYKFCVLQWD ESSELITRAMGDVSDRIGRPTDNGQI
Sbjct: 61 RIATMELFRPHGEAQDFLFVATERYKFCVLQWDYESSELITRAMGDVSDRIGRPTDNGQI 120
Query: 121 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVL 180
GIIDPDCR+IGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGC KPTI VL
Sbjct: 121 GIIDPDCRVIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCTKPTIAVL 180
Query: 181 YQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYC 240
YQDNKDARHVKTYEV+LKDK+FVEGPWSQNNLDNGADLLIPVP PLCGVLIIGEETIVYC
Sbjct: 181 YQDNKDARHVKTYEVSLKDKNFVEGPWSQNNLDNGADLLIPVPSPLCGVLIIGEETIVYC 240
Query: 241 SANAFKAIPIRPSITKAYGRVDADGSRYXXXXXXXXXXXXVITHEKEKVTGLKIELLGET 300
SANAFKAIPIRPSITKAYGRVD DGSRY VITHEKEKVTGLKIELLGET
Sbjct: 241 SANAFKAIPIRPSITKAYGRVDLDGSRYLLGDHAGLIHLLVITHEKEKVTGLKIELLGET 300
Query: 301 SIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLE 360
SIAS+ISYLDNAVV++GSSYGDSQLIKLNLQPDAKGSYVE+LE+YVNLGPIVDFCVVDLE
Sbjct: 301 SIASSISYLDNAVVFVGSSYGDSQLIKLNLQPDAKGSYVEILEKYVNLGPIVDFCVVDLE 360
Query: 361 RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVS 420
RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSL+SS D+ FDTFLVVS
Sbjct: 361 RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLKSSIDEAFDTFLVVS 420
Query: 421 FISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELR 480
FISETRILAMN+ GF S+ QTLFCHDA+YNQLVQVTS SVRLVSST+RELR
Sbjct: 421 FISETRILAMNIEDELEETEIEGFLSEVQTLFCHDAVYNQLVQVTSNSVRLVSSTTRELR 480
Query: 481 NEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPI 540
N+W +P G+SVNVATANASQVLLATGGGHLVYLEIGDG LTEVKH LEYE+SCLDINPI
Sbjct: 481 NKWDAPAGFSVNVATANASQVLLATGGGHLVYLEIGDGTLTEVKHVLLEYEVSCLDINPI 540
Query: 541 GENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCAL 600
G+NP+YSQ+AAVGMWTDISVRIF LPDL LITKE LGGEIIPRSVLLCAFEGISYLLCAL
Sbjct: 541 GDNPNYSQLAAVGMWTDISVRIFVLPDLTLITKEELGGEIIPRSVLLCAFEGISYLLCAL 600
Query: 601 GDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKL 660
GDGHLLNF L+ G+L DRKKVSLGT+PITLRTFSSK+ THVFAASDRP VIYS+NKKL
Sbjct: 601 GDGHLLNFQLDTSCGKLRDRKKVSLGTRPITLRTFSSKSATHVFAASDRPAVIYSNNKKL 660
Query: 661 LYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICH 720
LYSNVNLKEVSHMCPFNSAAFPDSLAIA+EGELTIGTIDDIQKLHIR+IP+GEH RRICH
Sbjct: 661 LYSNVNLKEVSHMCPFNSAAFPDSLAIAREGELTIGTIDDIQKLHIRTIPIGEHARRICH 720
Query: 721 QEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDS 780
QEQ+RTFAI L+N+ AEESE HFVRLLD Q+FEF+S+YPLD FE GCSILSCSF+DD
Sbjct: 721 QEQTRTFAISCLRNEPSAEESESHFVRLLDAQSFEFLSSYPLDAFECGCSILSCSFTDDK 780
Query: 781 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAIN 840
NVYYCVGTAYVLPEENEPTKGRILVFIVE+G+LQLI EKETKGAVYSLNAFNGKLLA+IN
Sbjct: 781 NVYYCVGTAYVLPEENEPTKGRILVFIVEEGRLQLITEKETKGAVYSLNAFNGKLLASIN 840
Query: 841 QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGA 900
QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFI VGDLMKSISLLIYKHEEGA
Sbjct: 841 QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIAVGDLMKSISLLIYKHEEGA 900
Query: 901 IEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLG 960
IEERARDYNANWM+AVEIL+DDIYLG +N FN+FTV+KN+EGATDEER R+EVVGEYH+G
Sbjct: 901 IEERARDYNANWMTAVEILNDDIYLGTDNCFNIFTVKKNNEGATDEERARMEVVGEYHIG 960
Query: 961 EFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVI 1020
EFVNRFRHGSLVM+LPDSD+GQIPTVIFGTV+G+IGVIASLP EQY FLEKLQT+LRKVI
Sbjct: 961 EFVNRFRHGSLVMKLPDSDIGQIPTVIFGTVSGMIGVIASLPQEQYAFLEKLQTSLRKVI 1020
Query: 1021 KGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKR 1080
KGVGGL+HEQWRSFNNEK+T +AK +LDGDLIESFLDLSR +M+EISK M+V VEELCKR
Sbjct: 1021 KGVGGLSHEQWRSFNNEKRTAEAKGYLDGDLIESFLDLSRGKMEEISKGMDVQVEELCKR 1080
Query: 1081 VEELTRLH 1088
VEELTRLH
Sbjct: 1081 VEELTRLH 1088
>UNIPROTKB|E2R9E3 [details] [associations]
symbol:DDB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0042787 "protein
ubiquitination involved in ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0031465 "Cul4B-RING ubiquitin ligase
complex" evidence=IEA] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000075
"cell cycle checkpoint" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
GO:GO:0003676 GO:GO:0042787 GO:GO:0000075 GO:GO:0031464
GO:GO:0031465 KO:K10610 OMA:CALGDGS CTD:1642
GeneTree:ENSGT00530000063396 EMBL:AAEX03011677 RefSeq:XP_533275.2
Ensembl:ENSCAFT00000025824 GeneID:476067 KEGG:cfa:476067
NextBio:20851798 Uniprot:E2R9E3
Length = 1140
Score = 2083 (738.3 bits), Expect = 1.2e-312, Sum P(2) = 1.2e-312
Identities = 406/738 (55%), Positives = 538/738 (72%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+IA
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIA 62
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIG 121
+ELFRP GE++D LFI T +Y C+L++ ES ++ITRA G+V DRIGRP++ G IG
Sbjct: 63 VMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIG 122
Query: 122 IIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181
IIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC PTI +Y
Sbjct: 123 IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVY 182
Query: 182 QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS 241
QD + RHVKTYEV+L++K+F +GPW Q N++ A ++I VP P G +IIG+E+I Y +
Sbjct: 183 QDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHN 241
Query: 242 ANAFKAI--PI-RPSITKAYGRVDADGSRYXXXXXXXXXXXXVITHEKEK---VT--GLK 293
+ + AI PI + S + RVD +GSRY ++ E++ VT L+
Sbjct: 242 GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR 301
Query: 294 IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVD 353
+ELLGETSIA ++YLDN VV++GS GDSQL+KLN+ + +GSYV +E + NLGPIVD
Sbjct: 302 VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVD 361
Query: 354 FCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPF 413
CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS +
Sbjct: 362 MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRET 421
Query: 414 DTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVS 473
D LV+SF+ +TR+L +N GF QT FC + + QL+Q+TS SVRLVS
Sbjct: 422 DDTLVLSFVGQTRVLMLN-GEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 480
Query: 474 STSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIS 533
+ L +EWK P G +++VA+ N+SQV++A G L YL+I L ++ H ++E+E++
Sbjct: 481 QEPKALVSEWKEPQGKNISVASCNSSQVVVAVGRA-LYYLQIHPQELRQISHTEMEHEVA 539
Query: 534 CLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGI 593
CLDI P+G++ S + A+G+WTDIS RI LP L+ KE LGGEIIPRS+L+ FE
Sbjct: 540 CLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESS 599
Query: 594 SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI 653
YLLCALGDG L F LN++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTVI
Sbjct: 600 HYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVI 659
Query: 654 YSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE 713
YSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL E
Sbjct: 660 YSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYE 719
Query: 714 HPRRICHQEQSRTFAICS 731
PR+IC+QE S+ F + S
Sbjct: 720 SPRKICYQEVSQCFGVLS 737
Score = 940 (336.0 bits), Expect = 1.2e-312, Sum P(2) = 1.2e-312
Identities = 193/377 (51%), Positives = 254/377 (67%)
Query: 724 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 782
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 768 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 827
Query: 783 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK 842
Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN
Sbjct: 828 YFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINST 887
Query: 843 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 902
++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG E
Sbjct: 888 VRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE 943
Query: 903 ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEF 962
E ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEF
Sbjct: 944 EIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEF 1003
Query: 963 VNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIK 1021
VN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK
Sbjct: 1004 VNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIK 1063
Query: 1022 GVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN---------- 1071
VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+ +
Sbjct: 1064 SVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKRE 1123
Query: 1072 VSVEELCKRVEELTRLH 1088
+ ++L K VEELTR+H
Sbjct: 1124 ATADDLIKVVEELTRIH 1140
>UNIPROTKB|A1A4K3 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9913
"Bos taurus" [GO:0080008 "Cul4-RING ubiquitin ligase complex"
evidence=ISS] [GO:0031464 "Cul4A-RING ubiquitin ligase complex"
evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=ISS] [GO:0031465 "Cul4B-RING ubiquitin
ligase complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0042787 "protein
ubiquitination involved in ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] [GO:0000075 "cell cycle checkpoint" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178
UniPathway:UPA00143 GO:GO:0005634 GO:GO:0005737 GO:GO:0043161
GO:GO:0016055 Gene3D:2.130.10.10 GO:GO:0003677 GO:GO:0006281
GO:GO:0042787 GO:GO:0000075 GO:GO:0031464 GO:GO:0031465
eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610 OMA:CALGDGS
EMBL:BC126629 IPI:IPI00713891 RefSeq:NP_001073731.1
UniGene:Bt.62917 STRING:A1A4K3 PRIDE:A1A4K3
Ensembl:ENSBTAT00000028740 GeneID:511951 KEGG:bta:511951 CTD:1642
GeneTree:ENSGT00530000063396 HOVERGEN:HBG005460 InParanoid:A1A4K3
OrthoDB:EOG4KPT91 NextBio:20870176 Uniprot:A1A4K3
Length = 1140
Score = 2081 (737.6 bits), Expect = 2.0e-312, Sum P(2) = 2.0e-312
Identities = 406/738 (55%), Positives = 538/738 (72%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+IA
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIA 62
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIG 121
+ELFRP GE++D LFI T +Y C+L++ ES ++ITRA G+V DRIGRP++ G IG
Sbjct: 63 VMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIG 122
Query: 122 IIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181
IIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC PTI +Y
Sbjct: 123 IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVY 182
Query: 182 QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS 241
QD + RHVKTYEV+L++K+F +GPW Q N++ A ++I VP P G +IIG+E+I Y +
Sbjct: 183 QDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHN 241
Query: 242 ANAFKAI--PI-RPSITKAYGRVDADGSRYXXXXXXXXXXXXVITHEKEK---VT--GLK 293
+ + AI PI + S + RVD +GSRY ++ E++ VT L+
Sbjct: 242 GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR 301
Query: 294 IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVD 353
+ELLGETSIA ++YLDN VV++GS GDSQL+KLN+ + +GSYV +E + NLGPIVD
Sbjct: 302 VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVD 361
Query: 354 FCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPF 413
CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS +
Sbjct: 362 MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRET 421
Query: 414 DTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVS 473
D LV+SF+ +TR+L +N GF QT FC + + QL+Q+TS SVRLVS
Sbjct: 422 DDTLVLSFVGQTRVLMLN-GEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 480
Query: 474 STSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIS 533
+ L +EWK P G +++VA+ N+SQV++A G L YL+I L ++ H ++E+E++
Sbjct: 481 QEPKALVSEWKEPQGKNISVASCNSSQVVVAVGRA-LYYLQIHPQELRQISHTEMEHEVA 539
Query: 534 CLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGI 593
CLDI P+G++ S + A+G+WTDIS RI LP L+ KE LGGEIIPRS+L+ FE
Sbjct: 540 CLDITPLGDSNGMSPLCAIGLWTDISARIAKLPSFELLHKEMLGGEIIPRSILMTTFESS 599
Query: 594 SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI 653
YLLCALGDG L F LN++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTVI
Sbjct: 600 HYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVI 659
Query: 654 YSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE 713
YSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL E
Sbjct: 660 YSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYE 719
Query: 714 HPRRICHQEQSRTFAICS 731
PR+IC+QE S+ F + S
Sbjct: 720 SPRKICYQEVSQCFGVLS 737
Score = 940 (336.0 bits), Expect = 2.0e-312, Sum P(2) = 2.0e-312
Identities = 193/377 (51%), Positives = 254/377 (67%)
Query: 724 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 782
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 768 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 827
Query: 783 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK 842
Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN
Sbjct: 828 YFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINST 887
Query: 843 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 902
++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG E
Sbjct: 888 VRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE 943
Query: 903 ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEF 962
E ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEF
Sbjct: 944 EIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEF 1003
Query: 963 VNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIK 1021
VN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK
Sbjct: 1004 VNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIK 1063
Query: 1022 GVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN---------- 1071
VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+ +
Sbjct: 1064 SVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKRE 1123
Query: 1072 VSVEELCKRVEELTRLH 1088
+ ++L K VEELTR+H
Sbjct: 1124 ATADDLIKVVEELTRIH 1140
>MGI|MGI:1202384 [details] [associations]
symbol:Ddb1 "damage specific DNA binding protein 1"
species:10090 "Mus musculus" [GO:0000075 "cell cycle checkpoint"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IDA] [GO:0031464 "Cul4A-RING ubiquitin ligase complex"
evidence=ISO] [GO:0031465 "Cul4B-RING ubiquitin ligase complex"
evidence=ISO] [GO:0042787 "protein ubiquitination involved in
ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0080008 "Cul4-RING ubiquitin ligase
complex" evidence=ISO] InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 UniPathway:UPA00143 MGI:MGI:1202384 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
GO:GO:0003684 GO:GO:0006281 GO:GO:0042787 GO:GO:0000075
GO:GO:0031464 GO:GO:0031465 eggNOG:NOG247734 KO:K10610 OMA:CALGDGS
CTD:1642 GeneTree:ENSGT00530000063396 HOVERGEN:HBG005460
HSSP:Q16531 ChiTaRS:DDB1 EMBL:AB026432 EMBL:AF159853 EMBL:AK146522
EMBL:AK152228 EMBL:AK154303 EMBL:AK155020 EMBL:AK155920
EMBL:AK157491 EMBL:BC002210 EMBL:BC009661 IPI:IPI00316740
PIR:JC7152 RefSeq:NP_056550.1 UniGene:Mm.289915 UniGene:Mm.466856
ProteinModelPortal:Q3U1J4 SMR:Q3U1J4 IntAct:Q3U1J4 STRING:Q3U1J4
PaxDb:Q3U1J4 PRIDE:Q3U1J4 Ensembl:ENSMUST00000025649 GeneID:13194
KEGG:mmu:13194 UCSC:uc008gqm.1 InParanoid:Q3U1J4 NextBio:283320
Bgee:Q3U1J4 CleanEx:MM_DDB1 Genevestigator:Q3U1J4 Uniprot:Q3U1J4
Length = 1140
Score = 2081 (737.6 bits), Expect = 2.0e-312, Sum P(2) = 2.0e-312
Identities = 406/738 (55%), Positives = 537/738 (72%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+IA
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIA 62
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIG 121
+ELFRP GE++D LFI T +Y C+L++ ES ++ITRA G+V DRIGRP++ G IG
Sbjct: 63 VMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIG 122
Query: 122 IIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181
IIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC PTI +Y
Sbjct: 123 IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVY 182
Query: 182 QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS 241
QD + RHVKTYEV+L++K+F +GPW Q N++ A ++I VP P G +IIG+E+I Y +
Sbjct: 183 QDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHN 241
Query: 242 ANAFKAI--PI-RPSITKAYGRVDADGSRYXXXXXXXXXXXXVITHEKEK---VT--GLK 293
+ + AI PI + S + RVD +GSRY ++ E++ VT L+
Sbjct: 242 GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR 301
Query: 294 IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVD 353
+ELLGETSIA ++YLDN VV++GS GDSQL+KLN+ + +GSYV +E + NLGPIVD
Sbjct: 302 VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVD 361
Query: 354 FCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPF 413
CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS
Sbjct: 362 MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPGRET 421
Query: 414 DTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVS 473
D LV+SF+ +TR+L +N GF QT FC + + QL+Q+TS SVRLVS
Sbjct: 422 DDTLVLSFVGQTRVLMLN-GEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 480
Query: 474 STSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIS 533
+ L +EWK P G +++VA+ N+SQV++A G L YL+I L ++ H ++E+E++
Sbjct: 481 QEPKALVSEWKEPQGKNISVASCNSSQVVVAVGRA-LYYLQIHPQELRQISHTEMEHEVA 539
Query: 534 CLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGI 593
CLDI P+G++ S + A+G+WTDIS RI LP L+ KE LGGEIIPRS+L+ FE
Sbjct: 540 CLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESS 599
Query: 594 SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI 653
YLLCALGDG L F LN++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTVI
Sbjct: 600 HYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVI 659
Query: 654 YSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE 713
YSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL E
Sbjct: 660 YSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYE 719
Query: 714 HPRRICHQEQSRTFAICS 731
PR+IC+QE S+ F + S
Sbjct: 720 SPRKICYQEVSQCFGVLS 737
Score = 940 (336.0 bits), Expect = 2.0e-312, Sum P(2) = 2.0e-312
Identities = 193/377 (51%), Positives = 254/377 (67%)
Query: 724 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 782
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 768 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 827
Query: 783 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK 842
Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN
Sbjct: 828 YFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINST 887
Query: 843 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 902
++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG E
Sbjct: 888 VRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE 943
Query: 903 ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEF 962
E ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEF
Sbjct: 944 EIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEF 1003
Query: 963 VNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIK 1021
VN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK
Sbjct: 1004 VNVFCHGSLVMQNLGEASTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIK 1063
Query: 1022 GVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN---------- 1071
VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+ +
Sbjct: 1064 SVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKRE 1123
Query: 1072 VSVEELCKRVEELTRLH 1088
+ ++L K VEELTR+H
Sbjct: 1124 ATADDLIKVVEELTRIH 1140
>UNIPROTKB|F1RIE2 [details] [associations]
symbol:DDB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0042787 "protein
ubiquitination involved in ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0031465 "Cul4B-RING ubiquitin ligase
complex" evidence=IEA] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000075
"cell cycle checkpoint" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
GO:GO:0003676 GO:GO:0042787 GO:GO:0000075 GO:GO:0031464
GO:GO:0031465 KO:K10610 OMA:CALGDGS GeneTree:ENSGT00530000063396
EMBL:CU462918 RefSeq:XP_003122699.1 Ensembl:ENSSSCT00000014314
GeneID:100522239 KEGG:ssc:100522239 Uniprot:F1RIE2
Length = 1140
Score = 2078 (736.6 bits), Expect = 4.2e-312, Sum P(2) = 4.2e-312
Identities = 405/738 (54%), Positives = 538/738 (72%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+IA
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIA 62
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIG 121
+ELFRP GE++D LFI T +Y C+L++ ES ++ITRA G+V DRIGRP++ G IG
Sbjct: 63 VMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIG 122
Query: 122 IIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181
IIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC PTI +Y
Sbjct: 123 IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVY 182
Query: 182 QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS 241
QD + RHVKTYEV+L++K+F +GPW Q N++ A ++I VP P G +IIG+E+I Y +
Sbjct: 183 QDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHN 241
Query: 242 ANAFKAI--PI-RPSITKAYGRVDADGSRYXXXXXXXXXXXXVITHEKEK---VT--GLK 293
+ + AI PI + S + RVD +GSRY ++ E++ VT L+
Sbjct: 242 GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR 301
Query: 294 IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVD 353
+ELLGETSIA ++YLDN VV++GS GDSQL+KLN+ + +GSYV +E + NLGPIVD
Sbjct: 302 VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVD 361
Query: 354 FCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPF 413
CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS +
Sbjct: 362 MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRET 421
Query: 414 DTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVS 473
D LV+SF+ +TR+L +N GF QT FC + + QL+Q+TS SVRLVS
Sbjct: 422 DDTLVLSFVGQTRVLMLN-GEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 480
Query: 474 STSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIS 533
+ L +EWK P G +++VA+ N++QV++A G L YL+I L ++ H ++E+E++
Sbjct: 481 QEPKALVSEWKEPQGKNISVASCNSNQVVVAVGRA-LYYLQIHPQELRQISHTEMEHEVA 539
Query: 534 CLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGI 593
CLDI P+G++ S + A+G+WTDIS RI LP L+ KE LGGEIIPRS+L+ FE
Sbjct: 540 CLDITPLGDSNGLSPLCAIGLWTDISARISKLPSFELLHKEMLGGEIIPRSILMTTFESS 599
Query: 594 SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI 653
YLLCALGDG L F LN++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTVI
Sbjct: 600 HYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVI 659
Query: 654 YSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE 713
YSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL E
Sbjct: 660 YSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYE 719
Query: 714 HPRRICHQEQSRTFAICS 731
PR+IC+QE S+ F + S
Sbjct: 720 SPRKICYQEVSQCFGVLS 737
Score = 940 (336.0 bits), Expect = 4.2e-312, Sum P(2) = 4.2e-312
Identities = 193/377 (51%), Positives = 254/377 (67%)
Query: 724 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 782
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 768 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 827
Query: 783 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK 842
Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN
Sbjct: 828 YFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINST 887
Query: 843 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 902
++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG E
Sbjct: 888 VRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE 943
Query: 903 ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEF 962
E ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEF
Sbjct: 944 EIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEF 1003
Query: 963 VNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIK 1021
VN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK
Sbjct: 1004 VNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIK 1063
Query: 1022 GVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN---------- 1071
VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+ +
Sbjct: 1064 SVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKRE 1123
Query: 1072 VSVEELCKRVEELTRLH 1088
+ ++L K VEELTR+H
Sbjct: 1124 ATADDLIKVVEELTRIH 1140
>UNIPROTKB|Q16531 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9606
"Homo sapiens" [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0016055 "Wnt receptor signaling pathway" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0000075 "cell cycle checkpoint" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0042787 "protein
ubiquitination involved in ubiquitin-dependent protein catabolic
process" evidence=IDA] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=IDA] [GO:0031465 "Cul4B-RING ubiquitin ligase
complex" evidence=IDA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IMP] [GO:0080008 "Cul4-RING
ubiquitin ligase complex" evidence=IDA] [GO:0003677 "DNA binding"
evidence=TAS] [GO:0003684 "damaged DNA binding" evidence=TAS]
[GO:0000718 "nucleotide-excision repair, DNA damage removal"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281
"DNA repair" evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] Reactome:REACT_216 InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 EMBL:U32986
GO:GO:0005737 GO:GO:0019048 GO:GO:0005654 GO:GO:0043161
GO:GO:0016055 Gene3D:2.130.10.10 GO:GO:0003684 EMBL:CH471076
GO:GO:0042787 GO:GO:0000075 GO:GO:0000718 EMBL:AP003108
GO:GO:0031464 PDB:2HYE PDB:4A0K PDBsum:2HYE PDBsum:4A0K PDB:4A0L
PDBsum:4A0L GO:GO:0031465 PDB:3I7P PDBsum:3I7P PDB:3I8C PDBsum:3I8C
PDB:3I89 PDBsum:3I89 PDB:3I7O PDBsum:3I7O PDB:3I8E PDBsum:3I8E
eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610 OMA:CALGDGS
CTD:1642 HOVERGEN:HBG005460 OrthoDB:EOG4KPT91 EMBL:U18299
EMBL:L40326 EMBL:AJ002955 EMBL:AK312436 EMBL:AY960579 EMBL:BC011686
EMBL:BC050530 EMBL:BC051764 IPI:IPI00293464 PIR:I38908
RefSeq:NP_001914.3 UniGene:Hs.290758 PDB:2B5L PDB:2B5M PDB:2B5N
PDB:3E0C PDB:3EI1 PDB:3EI2 PDB:3EI3 PDB:3EI4 PDB:3I7H PDB:3I7K
PDB:3I7L PDB:3I7N PDB:4A08 PDB:4A09 PDB:4A0A PDB:4A0B PDB:4A11
PDB:4E54 PDB:4E5Z PDBsum:2B5L PDBsum:2B5M PDBsum:2B5N PDBsum:3E0C
PDBsum:3EI1 PDBsum:3EI2 PDBsum:3EI3 PDBsum:3EI4 PDBsum:3I7H
PDBsum:3I7K PDBsum:3I7L PDBsum:3I7N PDBsum:4A08 PDBsum:4A09
PDBsum:4A0A PDBsum:4A0B PDBsum:4A11 PDBsum:4E54 PDBsum:4E5Z
ProteinModelPortal:Q16531 SMR:Q16531 DIP:DIP-430N IntAct:Q16531
MINT:MINT-1134697 STRING:Q16531 PhosphoSite:Q16531 PaxDb:Q16531
PRIDE:Q16531 Ensembl:ENST00000301764 GeneID:1642 KEGG:hsa:1642
UCSC:uc001nrc.4 GeneCards:GC11M061066 H-InvDB:HIX0171380
HGNC:HGNC:2717 HPA:CAB032821 MIM:600045 neXtProt:NX_Q16531
PharmGKB:PA27187 InParanoid:Q16531 ChiTaRS:DDB1
EvolutionaryTrace:Q16531 GenomeRNAi:1642 NextBio:6750
ArrayExpress:Q16531 Bgee:Q16531 CleanEx:HS_DDB1
Genevestigator:Q16531 GermOnline:ENSG00000167986 Uniprot:Q16531
Length = 1140
Score = 2077 (736.2 bits), Expect = 5.4e-312, Sum P(2) = 5.4e-312
Identities = 405/738 (54%), Positives = 537/738 (72%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+IA
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIA 62
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIG 121
+ELFRP GE++D LFI T +Y C+L++ ES ++ITRA G+V DRIGRP++ G IG
Sbjct: 63 VMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIG 122
Query: 122 IIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181
IIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC PTI +Y
Sbjct: 123 IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVY 182
Query: 182 QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS 241
QD + RHVKTYEV+L++K+F +GPW Q N++ A ++I VP P G +IIG+E+I Y +
Sbjct: 183 QDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHN 241
Query: 242 ANAFKAI--PI-RPSITKAYGRVDADGSRYXXXXXXXXXXXXVITHEKEK---VT--GLK 293
+ + AI PI + S + RVD +GSRY ++ E++ VT L+
Sbjct: 242 GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR 301
Query: 294 IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVD 353
+ELLGETSIA ++YLDN VV++GS GDSQL+KLN+ + +GSYV +E + NLGPIVD
Sbjct: 302 VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVD 361
Query: 354 FCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPF 413
CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS +
Sbjct: 362 MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRET 421
Query: 414 DTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVS 473
D LV+SF+ +TR+L +N GF QT FC + + QL+Q+TS SVRLVS
Sbjct: 422 DDTLVLSFVGQTRVLMLN-GEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 480
Query: 474 STSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIS 533
+ L +EWK P +++VA+ N+SQV++A G L YL+I L ++ H ++E+E++
Sbjct: 481 QEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRA-LYYLQIHPQELRQISHTEMEHEVA 539
Query: 534 CLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGI 593
CLDI P+G++ S + A+G+WTDIS RI LP L+ KE LGGEIIPRS+L+ FE
Sbjct: 540 CLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESS 599
Query: 594 SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI 653
YLLCALGDG L F LN++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTVI
Sbjct: 600 HYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVI 659
Query: 654 YSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE 713
YSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL E
Sbjct: 660 YSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYE 719
Query: 714 HPRRICHQEQSRTFAICS 731
PR+IC+QE S+ F + S
Sbjct: 720 SPRKICYQEVSQCFGVLS 737
Score = 940 (336.0 bits), Expect = 5.4e-312, Sum P(2) = 5.4e-312
Identities = 193/377 (51%), Positives = 254/377 (67%)
Query: 724 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 782
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 768 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 827
Query: 783 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK 842
Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN
Sbjct: 828 YFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINST 887
Query: 843 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 902
++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG E
Sbjct: 888 VRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE 943
Query: 903 ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEF 962
E ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEF
Sbjct: 944 EIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEF 1003
Query: 963 VNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIK 1021
VN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK
Sbjct: 1004 VNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIK 1063
Query: 1022 GVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN---------- 1071
VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+ +
Sbjct: 1064 SVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKRE 1123
Query: 1072 VSVEELCKRVEELTRLH 1088
+ ++L K VEELTR+H
Sbjct: 1124 ATADDLIKVVEELTRIH 1140
>UNIPROTKB|Q6P6Z0 [details] [associations]
symbol:ddb1 "DNA damage-binding protein 1" species:8355
"Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=ISS] [GO:0031465 "Cul4B-RING ubiquitin ligase
complex" evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=ISS] [GO:0080008 "Cul4-RING
ubiquitin ligase complex" evidence=ISS] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 Gene3D:2.130.10.10 GO:GO:0003677
GO:GO:0006281 GO:GO:0016567 GO:GO:0031464 GO:GO:0031465 KO:K10610
CTD:1642 HOVERGEN:HBG005460 HSSP:Q16531 EMBL:BC061946
RefSeq:NP_001083624.1 UniGene:Xl.23906 PRIDE:Q6P6Z0 GeneID:399026
KEGG:xla:399026 Xenbase:XB-GENE-967911 Uniprot:Q6P6Z0
Length = 1140
Score = 2078 (736.6 bits), Expect = 1.1e-311, Sum P(2) = 1.1e-311
Identities = 414/741 (55%), Positives = 539/741 (72%)
Query: 4 WNYVVTAHKPTNVTHSCV-GNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRI 62
+NYVVTA KPT V ++CV G+FTS +LNL+IAK TR+EI+++TP+GL+P+ +V +YG+I
Sbjct: 3 YNYVVTAQKPTAV-NACVTGHFTSEDDLNLLIAKNTRLEIYVVTPEGLRPVKEVGMYGKI 61
Query: 63 ATLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQI 120
A +ELFRP GE++D LFI T +Y C+L++ +S ++ITRA G+V DRIGRP++ G I
Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNACILEYKQSGDSIDIITRAHGNVQDRIGRPSETGII 121
Query: 121 GIIDPDCRLIGLHLYDGLFKVIPF--DNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIV 178
GIIDPDCR+IGL LYDGLFKVIP DNK +LK AFNIRLEEL V+D+KFLY C PTI
Sbjct: 122 GIIDPDCRMIGLRLYDGLFKVIPLERDNK-ELK-AFNIRLEELHVIDVKFLYSCQAPTIC 179
Query: 179 VLYQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIV 238
+YQD + RHVKTYEV+L++K+F +GPW Q N++ A ++I VP P G +IIG+E+I
Sbjct: 180 FVYQDPQ-GRHVKTYEVSLREKEFSKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESIT 238
Query: 239 YCSANAFKAI--PI-RPSITKAYGRVDADGSRYXXXXXXXXXXXXVITHEKE---KVT-- 290
Y + + + AI PI + S + RVD +GSRY ++ E++ VT
Sbjct: 239 YHNGDKYLAIAPPIIKQSTIVCHNRVDVNGSRYLLGDMEGRLFMLLLEKEEQMDGSVTLK 298
Query: 291 GLKIELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGP 350
L++ELLGETSIA ++YLDN VV++GS GDSQL+KL + + +GSYV V+E + NLGP
Sbjct: 299 DLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLTTESNEQGSYVVVMETFTNLGP 358
Query: 351 IVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTD 410
IVD CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LR + D
Sbjct: 359 IVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRVAAD 418
Query: 411 DPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVTSGSVR 470
D LV+SF+ +TR+L + GF QT FC + + QL+Q+TS SVR
Sbjct: 419 RDTDDTLVLSFVGQTRVLTLT-GEEVEETDLAGFVDDQQTFFCGNVAHQQLIQITSASVR 477
Query: 471 LVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEY 530
LVS + L +EWK P G V+V + N+ QVLLA G L YLEI G L + ++E+
Sbjct: 478 LVSQNPQNLVSEWKEPQGRKVSVCSCNSRQVLLAVGRV-LYYLEIHPGELRQTSCTEMEH 536
Query: 531 EISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAF 590
E++CLD+ P+G N + S + A+G+WTDIS RI SLP L+ KE LGGEIIPRS+L+ +F
Sbjct: 537 EVACLDVTPLGGNDTLSSLCAIGLWTDISARILSLPGFQLLHKEMLGGEIIPRSILMTSF 596
Query: 591 EGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRP 650
E YLLCALGDG L F LN TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRP
Sbjct: 597 ESSHYLLCALGDGALFYFSLNTDTGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRP 656
Query: 651 TVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIP 710
TVIYSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR++P
Sbjct: 657 TVIYSSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVP 716
Query: 711 LGEHPRRICHQEQSRTFAICS 731
L E PR+IC+QE S+ F + S
Sbjct: 717 LFESPRKICYQEVSQCFGVLS 737
Score = 936 (334.5 bits), Expect = 1.1e-311, Sum P(2) = 1.1e-311
Identities = 191/364 (52%), Positives = 249/364 (68%)
Query: 736 SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEE 795
S EE E+H + ++D TFE + T+ EY S++SC D Y+ VGTA V P+E
Sbjct: 781 SFGEEVEVHNLLIIDQHTFEVLHTHQFLQNEYTLSLVSCKLGKDPTTYFVVGTAMVYPDE 840
Query: 796 NEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGT 855
EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN ++LY+W
Sbjct: 841 AEPKQGRIVVFQYNDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAE---- 896
Query: 856 RELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSA 915
+EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG EE ARD+N NWMSA
Sbjct: 897 KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSA 956
Query: 916 VEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR- 974
VEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEFVN F HGSLVM+
Sbjct: 957 VEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQN 1016
Query: 975 LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSF 1034
L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK VG + H WRSF
Sbjct: 1017 LGETSPPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDVQNRLNKVIKSVGKIEHSFWRSF 1076
Query: 1035 NNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNV----------SVEELCKRVEEL 1084
+ E+KT A F+DGDLIESFLD+SR +M E+ + + +V++L K VEEL
Sbjct: 1077 HTERKTEPATGFIDGDLIESFLDISRPKMQEVIANLQIDDGSGMKRETTVDDLIKVVEEL 1136
Query: 1085 TRLH 1088
TR+H
Sbjct: 1137 TRIH 1140
>UNIPROTKB|Q5R649 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9601
"Pongo abelii" [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=ISS] [GO:0031465 "Cul4B-RING ubiquitin ligase
complex" evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=ISS] [GO:0080008 "Cul4-RING
ubiquitin ligase complex" evidence=ISS] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 Gene3D:2.130.10.10 GO:GO:0003677
GO:GO:0006281 GO:GO:0016567 GO:GO:0031464 GO:GO:0031465 KO:K10610
CTD:1642 HOVERGEN:HBG005460 HSSP:Q16531 EMBL:CR860647
RefSeq:NP_001126613.1 UniGene:Pab.18111 GeneID:100173610
KEGG:pon:100173610 InParanoid:Q5R649 Uniprot:Q5R649
Length = 1140
Score = 2078 (736.6 bits), Expect = 1.4e-311, Sum P(2) = 1.4e-311
Identities = 405/738 (54%), Positives = 537/738 (72%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+IA
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIA 62
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIG 121
+ELFRP GE++D LFI T +Y C+L++ ES ++ITRA G+V DRIGRP++ G IG
Sbjct: 63 VMELFRPKGESKDLLFILTAKYNVCILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIG 122
Query: 122 IIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181
IIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC PTI +Y
Sbjct: 123 IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVY 182
Query: 182 QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS 241
QD + RHVKTYEV+L++K+F +GPW Q N++ A ++I VP P G +IIG+E+I Y +
Sbjct: 183 QDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHN 241
Query: 242 ANAFKAI--PI-RPSITKAYGRVDADGSRYXXXXXXXXXXXXVITHEKEK---VT--GLK 293
+ + AI PI + S + RVD +GSRY ++ E++ VT L+
Sbjct: 242 GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR 301
Query: 294 IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVD 353
+ELLGETSIA ++YLDN VV++GS GDSQL+KLN+ + +GSYV +E + NLGPIVD
Sbjct: 302 VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVD 361
Query: 354 FCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPF 413
CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS +
Sbjct: 362 MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRET 421
Query: 414 DTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVS 473
D LV+SF+ +TR+L +N GF QT FC + + QL+Q+TS SVRLVS
Sbjct: 422 DDTLVLSFVGQTRVLMLN-GEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 480
Query: 474 STSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIS 533
+ L +EWK P +++VA+ N+SQV++A G L YL+I L ++ H ++E+E++
Sbjct: 481 QEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRA-LYYLQIHPQELRQISHTEMEHEVA 539
Query: 534 CLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGI 593
CLDI P+G++ S + A+G+WTDIS RI LP L+ KE LGGEIIPRS+L+ FE
Sbjct: 540 CLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESS 599
Query: 594 SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI 653
YLLCALGDG L F LN++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTVI
Sbjct: 600 HYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVI 659
Query: 654 YSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE 713
YSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL E
Sbjct: 660 YSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYE 719
Query: 714 HPRRICHQEQSRTFAICS 731
PR+IC+QE S+ F + S
Sbjct: 720 SPRKICYQEVSQCFGVLS 737
Score = 935 (334.2 bits), Expect = 1.4e-311, Sum P(2) = 1.4e-311
Identities = 192/377 (50%), Positives = 253/377 (67%)
Query: 724 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 782
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 768 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 827
Query: 783 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK 842
Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGAVY + FNGKLLA+IN
Sbjct: 828 YFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYPMVEFNGKLLASINST 887
Query: 843 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 902
++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG E
Sbjct: 888 VRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE 943
Query: 903 ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEF 962
E ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEF
Sbjct: 944 EIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEF 1003
Query: 963 VNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIK 1021
VN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK
Sbjct: 1004 VNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIK 1063
Query: 1022 GVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN---------- 1071
VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+ +
Sbjct: 1064 SVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKRE 1123
Query: 1072 VSVEELCKRVEELTRLH 1088
+ ++L K VEELTR+H
Sbjct: 1124 ATADDLIKVVEELTRIH 1140
>UNIPROTKB|P33194 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9534
"Chlorocebus aethiops" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0031464 "Cul4A-RING
ubiquitin ligase complex" evidence=ISS] [GO:0031465 "Cul4B-RING
ubiquitin ligase complex" evidence=ISS] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178
UniPathway:UPA00143 GO:GO:0005634 GO:GO:0005737 GO:GO:0043161
Gene3D:2.130.10.10 GO:GO:0003677 GO:GO:0006281 GO:GO:0016567
GO:GO:0031464 GO:GO:0031465 HOVERGEN:HBG005460 EMBL:L20216
PIR:S38777 PRIDE:P33194 Uniprot:P33194
Length = 1140
Score = 2071 (734.1 bits), Expect = 2.3e-311, Sum P(2) = 2.3e-311
Identities = 404/738 (54%), Positives = 536/738 (72%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V +FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+IA
Sbjct: 3 YNYVVTAQKPTAVNGCVTAHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIA 62
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIG 121
+ELFRP GE++D LFI T +Y C+L++ ES ++ITRA G+V DRIGRP++ G IG
Sbjct: 63 VMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIG 122
Query: 122 IIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181
IIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC PTI +Y
Sbjct: 123 IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVY 182
Query: 182 QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS 241
QD + RHVKTYEV+L++K+F +GPW Q N++ A ++I VP P G +IIG+E+I Y +
Sbjct: 183 QDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHN 241
Query: 242 ANAFKAI--PI-RPSITKAYGRVDADGSRYXXXXXXXXXXXXVITHEKEK---VT--GLK 293
+ + AI PI + S + RVD +GSRY ++ E++ VT L+
Sbjct: 242 GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR 301
Query: 294 IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVD 353
+ELLGETSIA ++YLDN VV++GS GDSQL+KLN+ + +GSYV +E + NLGPIVD
Sbjct: 302 VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVD 361
Query: 354 FCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPF 413
CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS +
Sbjct: 362 MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRET 421
Query: 414 DTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVS 473
D LV+SF+ +TR+L +N GF QT FC + + QL+Q+TS SVRLVS
Sbjct: 422 DDTLVLSFVGQTRVLMLN-GEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 480
Query: 474 STSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIS 533
+ L +EWK P +++VA+ N+SQV++A G L YL+I L ++ H ++E+E++
Sbjct: 481 QEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRA-LYYLQIHPQELRQISHTEMEHEVA 539
Query: 534 CLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGI 593
CLDI P+G++ S + A+G+WTDIS RI LP L+ KE LGGEIIPRS+L+ FE
Sbjct: 540 CLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESS 599
Query: 594 SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI 653
YLLCALGDG L F LN++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTVI
Sbjct: 600 HYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVI 659
Query: 654 YSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE 713
YSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL E
Sbjct: 660 YSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYE 719
Query: 714 HPRRICHQEQSRTFAICS 731
PR+IC+QE S+ F + S
Sbjct: 720 SPRKICYQEVSQCFGVLS 737
Score = 940 (336.0 bits), Expect = 2.3e-311, Sum P(2) = 2.3e-311
Identities = 193/377 (51%), Positives = 254/377 (67%)
Query: 724 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 782
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 768 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 827
Query: 783 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK 842
Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN
Sbjct: 828 YFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINST 887
Query: 843 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 902
++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG E
Sbjct: 888 VRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE 943
Query: 903 ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEF 962
E ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEF
Sbjct: 944 EIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEF 1003
Query: 963 VNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIK 1021
VN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK
Sbjct: 1004 VNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIK 1063
Query: 1022 GVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN---------- 1071
VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+ +
Sbjct: 1064 SVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKRE 1123
Query: 1072 VSVEELCKRVEELTRLH 1088
+ ++L K VEELTR+H
Sbjct: 1124 ATADDLIKVVEELTRIH 1140
>UNIPROTKB|Q805F9 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0016567
"protein ubiquitination" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0080008
"Cul4-RING ubiquitin ligase complex" evidence=ISS] [GO:0031465
"Cul4B-RING ubiquitin ligase complex" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISS] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=ISS] InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005737 GO:GO:0005654
GO:GO:0043161 Gene3D:2.130.10.10 GO:GO:0003677 GO:GO:0006281
GO:GO:0016567 Reactome:REACT_115612 GO:GO:0031464 GO:GO:0031465
eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610 CTD:1642
HOVERGEN:HBG005460 OrthoDB:EOG4KPT91 HSSP:Q16531 EMBL:AB074298
EMBL:AJ719779 IPI:IPI00597295 RefSeq:NP_989547.1 UniGene:Gga.12977
STRING:Q805F9 PRIDE:Q805F9 GeneID:374050 KEGG:gga:374050
NextBio:20813572 Uniprot:Q805F9
Length = 1140
Score = 2069 (733.4 bits), Expect = 3.8e-311, Sum P(2) = 3.8e-311
Identities = 402/738 (54%), Positives = 538/738 (72%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+ A
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKTA 62
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIG 121
+ELFRP GE++D LFI T +Y C+L++ + ++ ++ITRA G+V DRIGRP++ G IG
Sbjct: 63 VMELFRPKGESKDLLFILTAKYNACILEYKQNGDNIDIITRAHGNVQDRIGRPSETGIIG 122
Query: 122 IIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181
IIDP+CR+IGL LYDGLFKVIP D + + +AFNIRLEELQV+D+KFLYGC PTI +Y
Sbjct: 123 IIDPECRMIGLRLYDGLFKVIPLDRENKELKAFNIRLEELQVIDVKFLYGCQAPTICFVY 182
Query: 182 QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS 241
QD + RHVKTYEV+L++K+F +GPW Q N++ A ++I VP P G +IIG+E+I Y +
Sbjct: 183 QDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHN 241
Query: 242 ANAFKAI--PI-RPSITKAYGRVDADGSRYXXXXXXXXXXXXVITHEKEK---VT--GLK 293
+ + AI PI + S + RVD +GSRY ++ E++ VT L+
Sbjct: 242 GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR 301
Query: 294 IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVD 353
+ELLGETSIA ++YLDN VV++GS GDSQL+KLN+ + +GSYV +E + NLGPIVD
Sbjct: 302 VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVD 361
Query: 354 FCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPF 413
CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS +
Sbjct: 362 MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDSHREM 421
Query: 414 DTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVS 473
D LV+SF+ +TR+L +N GF QT FC + + QL+Q+TS SVRLVS
Sbjct: 422 DNMLVLSFVGQTRVLMLN-GEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 480
Query: 474 STSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIS 533
+ L +EWK P G +++VA+ N++QV++A G L YLEI L ++ ++E+E++
Sbjct: 481 QEPKALVSEWKEPNGKNISVASCNSNQVVVAVGRA-LYYLEIRPQELRQINCTEMEHEVA 539
Query: 534 CLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGI 593
CLDI P+G+ S + A+G+WTDIS RI LP L+ KE LGGEIIPRS+L+ FE
Sbjct: 540 CLDITPLGDTNGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESS 599
Query: 594 SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI 653
YLLCALGDG L F L+++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTVI
Sbjct: 600 HYLLCALGDGALFYFGLSLETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVI 659
Query: 654 YSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE 713
YSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL E
Sbjct: 660 YSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYE 719
Query: 714 HPRRICHQEQSRTFAICS 731
PR+IC+QE S+ F + S
Sbjct: 720 SPRKICYQEVSQCFGVLS 737
Score = 940 (336.0 bits), Expect = 3.8e-311, Sum P(2) = 3.8e-311
Identities = 194/377 (51%), Positives = 255/377 (67%)
Query: 724 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 782
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 768 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 827
Query: 783 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK 842
Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN
Sbjct: 828 YFIVGTAMVYPEEAEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINST 887
Query: 843 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 902
++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG E
Sbjct: 888 VRLYEWTAE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE 943
Query: 903 ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEF 962
E ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG HLGEF
Sbjct: 944 EIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLSHLGEF 1003
Query: 963 VNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIK 1021
VN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK
Sbjct: 1004 VNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIK 1063
Query: 1022 GVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNV--------- 1072
VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+ + +
Sbjct: 1064 SVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKRE 1123
Query: 1073 -SVEELCKRVEELTRLH 1088
+V++L K VEELTR+H
Sbjct: 1124 ATVDDLIKIVEELTRIH 1140
>ZFIN|ZDB-GENE-040426-1272 [details] [associations]
symbol:ddb1 "damage specific DNA binding protein
1" species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 ZFIN:ZDB-GENE-040426-1272
GO:GO:0005634 Gene3D:2.130.10.10 GO:GO:0003676 EMBL:JQ692623
UniGene:Dr.77970 Uniprot:I1XUS8
Length = 1140
Score = 2057 (729.2 bits), Expect = 6.1e-311, Sum P(2) = 6.1e-311
Identities = 402/739 (54%), Positives = 539/739 (72%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V G+FTS ++LNL+IAK TR+EI+ +T +GL+P+ +V +YG+IA
Sbjct: 3 YNYVVTAQKPTAVNACITGHFTSAEDLNLLIAKNTRLEIYAVTAEGLRPVKEVGMYGKIA 62
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIG 121
+ELFRP GE++D LFI T +Y C+L++ +S ++ITRA G+V DRIGRP++ G IG
Sbjct: 63 VMELFRPKGESKDLLFILTAKYNACILEYKQSGDSIDIITRAHGNVQDRIGRPSETGIIG 122
Query: 122 IIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181
I+DP+CR+IGL LYDGLFKVIP D + + +AFNIRLEELQV+D++FLYGC PT+ +Y
Sbjct: 123 IVDPECRMIGLRLYDGLFKVIPLDRENRELKAFNIRLEELQVIDVQFLYGCQAPTVCFIY 182
Query: 182 QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS 241
QD + RHVKTYEV+L++K+F +GPW Q N++ A ++IPVP P G +IIG+E+I Y +
Sbjct: 183 QDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYHN 241
Query: 242 ANAFKAI--PI-RPSITKAYGRVDADGSRYXXXXXXXXXXXXVITHEKEKVTG------L 292
+ + A+ PI + S + RVD +GSRY ++ E E + G L
Sbjct: 242 GDKYLAVAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKE-ELMDGAVVLKDL 300
Query: 293 KIELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIV 352
+ELLGETSIA ++YLDN VV++GS GDSQL+KLN+ + +GSYV V+E + NLGPIV
Sbjct: 301 HVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNDQGSYVGVMETFTNLGPIV 360
Query: 353 DFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDP 412
D CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS +
Sbjct: 361 DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSESSRD 420
Query: 413 FDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLV 472
D LV+SF+ +TR+L ++ GF QT FC + + QL+Q+TS SVRLV
Sbjct: 421 TDDMLVLSFVGQTRVLMLS-GEEVEETELQGFVDNQQTFFCGNVAHQQLIQITSVSVRLV 479
Query: 473 SSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEI 532
+ S+ L +EWK P G +++VA+ N +QV+LA G L YL+I G L ++ ++E+E+
Sbjct: 480 TQDSKALVSEWKEPQGRNISVASCNNTQVVLAVGRV-LYYLQILSGELKQISSTEMEHEV 538
Query: 533 SCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEG 592
+CLDI P+GE + S I AVG+WTDIS R+ LP + KE LGGEIIPRS+L+ FEG
Sbjct: 539 ACLDITPLGERTADSCICAVGLWTDISARLLKLPCFTPLHKEMLGGEIIPRSILMTTFEG 598
Query: 593 ISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTV 652
YLLCALGDG L F L+++TG L++RKKV+LGTQP LRTF S +T++VFA SDRPTV
Sbjct: 599 SHYLLCALGDGALFYFGLDIQTGVLSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTV 658
Query: 653 IYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLG 712
IYSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL
Sbjct: 659 IYSSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLY 718
Query: 713 EHPRRICHQEQSRTFAICS 731
E P+RIC+QE S+ F + S
Sbjct: 719 ESPKRICYQEVSQCFGVLS 737
Score = 950 (339.5 bits), Expect = 6.1e-311, Sum P(2) = 6.1e-311
Identities = 194/364 (53%), Positives = 250/364 (68%)
Query: 736 SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEE 795
S EE E+H + ++D TFE + + EY S++SC D VY+ VGTA V PEE
Sbjct: 781 SFGEEVEVHSLLVVDQHTFEVLHAHQFLQNEYALSMVSCKLGRDPAVYFIVGTAMVYPEE 840
Query: 796 NEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGT 855
EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN ++LY+W
Sbjct: 841 AEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAE---- 896
Query: 856 RELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSA 915
+EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG+ EE ARD+N NWMSA
Sbjct: 897 KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGSFEEIARDFNPNWMSA 956
Query: 916 VEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR- 974
VEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEFVN F HGSLV++
Sbjct: 957 VEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFSHGSLVLQN 1016
Query: 975 LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSF 1034
L +S +V+FGTVNG+IG++ SL Y L LQ L KVIK VG + H WRSF
Sbjct: 1017 LGESSTPTQGSVLFGTVNGMIGLVTSLSEGWYSLLLDLQNRLNKVIKSVGKIEHSFWRSF 1076
Query: 1035 NNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNV----------SVEELCKRVEEL 1084
+ E+KT A F+DGDLIESFLDL R +M E+ T+ + +V+E+ K VEEL
Sbjct: 1077 HTERKTEQATGFIDGDLIESFLDLGRAKMQEVVSTLQIDDGSGMKREATVDEVIKIVEEL 1136
Query: 1085 TRLH 1088
TR+H
Sbjct: 1137 TRIH 1140
>RGD|621889 [details] [associations]
symbol:Ddb1 "damage-specific DNA binding protein 1, 127kDa"
species:10116 "Rattus norvegicus" [GO:0000075 "cell cycle
checkpoint" evidence=IEA;ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IMP]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO;ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISO;ISS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA;ISO] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0031464 "Cul4A-RING ubiquitin
ligase complex" evidence=IEA;ISO;ISS] [GO:0031465 "Cul4B-RING
ubiquitin ligase complex" evidence=IEA;ISO;ISS] [GO:0042787
"protein ubiquitination involved in ubiquitin-dependent protein
catabolic process" evidence=IEA;ISO] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process"
evidence=IEA;ISO;ISS] [GO:0080008 "Cul4-RING ubiquitin ligase
complex" evidence=ISO;ISS] InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 UniPathway:UPA00143 RGD:621889 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
GO:GO:0003684 GO:GO:0006281 GO:GO:0042787 GO:GO:0000075
GO:GO:0031464 GO:GO:0031465 eggNOG:NOG247734 HOGENOM:HOG000007241
HOVERGEN:HBG005460 HSSP:Q16531 EMBL:AJ277077 IPI:IPI00324451
UniGene:Rn.8402 IntAct:Q9ESW0 MINT:MINT-4784948 STRING:Q9ESW0
PhosphoSite:Q9ESW0 PRIDE:Q9ESW0 UCSC:RGD:621889 InParanoid:Q9ESW0
ArrayExpress:Q9ESW0 Genevestigator:Q9ESW0 Uniprot:Q9ESW0
Length = 1140
Score = 2056 (728.8 bits), Expect = 2.1e-308, Sum P(2) = 2.1e-308
Identities = 399/740 (53%), Positives = 537/740 (72%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V G+FTS +++NL+IAK TR+EI+++T +GL+P+ +V +YG+IA
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDINLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIA 62
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIG 121
+ELFRP GE++D LFI T +Y C+L++ ES ++ITRA G+V DRIGRP++ G IG
Sbjct: 63 VMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIG 122
Query: 122 IIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181
IIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC PTI +Y
Sbjct: 123 IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVY 182
Query: 182 QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS 241
QD + RHVKTYEV+L++K+F +GPW Q N++ A ++I VP P G +IIG+E+I Y +
Sbjct: 183 QDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHN 241
Query: 242 ANAFKAI--PI-RPSITKAYGRVDADGSRYXXXXXXXXXXXXVITHEKEK---VT--GLK 293
+ + AI PI + S + RVD +GSRY ++ E++ VT L+
Sbjct: 242 GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR 301
Query: 294 IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVD 353
+ELLGETSIA ++YLDN VV++GS GDSQ +KLN+ + +GSYV +E + NLGPIVD
Sbjct: 302 VELLGETSIAECLTYLDNGVVFVGSRLGDSQPVKLNVDSNEQGSYVVAMETFTNLGPIVD 361
Query: 354 FCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPF 413
CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS +
Sbjct: 362 MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRET 421
Query: 414 DTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVS 473
D LV+SF+ +TR+L +N GF QT FC + + QL+Q+TS SVRLVS
Sbjct: 422 DDTLVLSFVGQTRVLMLN-GEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 480
Query: 474 STSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIS 533
+ L +EWK P +++VA+ N+SQV++A G L YL+I L ++ H ++E+E++
Sbjct: 481 QEPKALVSEWKEPRAKNISVASCNSSQVVVAVGRA-LYYLQIHPQELRQISHTEMEHEVA 539
Query: 534 CLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGI 593
CLD+ P+G++ S + A+G+WTDIS RI LP L+ KE LGGEIIPRS+L+ FE
Sbjct: 540 CLDVTPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESS 599
Query: 594 SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI 653
YLLCALGDG L F LN++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTVI
Sbjct: 600 HYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVI 659
Query: 654 YSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE 713
YSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGT+++IQKLHIR++P+ E
Sbjct: 660 YSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANTSTLTIGTMNEIQKLHIRTVPIYE 719
Query: 714 HPRRICHQEQSRTFAICSLK 733
PR+IC+QE S+ F + S +
Sbjct: 720 SPRKICYQEVSQCFGVLSTR 739
Score = 927 (331.4 bits), Expect = 2.1e-308, Sum P(2) = 2.1e-308
Identities = 191/377 (50%), Positives = 252/377 (66%)
Query: 724 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 782
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 768 SKLFSSSAAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 827
Query: 783 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK 842
Y+ VGTA V PEE EP +GRI+VF GKLQ +AEKE KGAVYS+ FNGKLLA+IN
Sbjct: 828 YFIVGTAMVYPEEAEPKQGRIVVFQYSGGKLQTVAEKEVKGAVYSMVEFNGKLLASINST 887
Query: 843 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 902
++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG E
Sbjct: 888 VRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE 943
Query: 903 ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEF 962
E ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEF
Sbjct: 944 EIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEF 1003
Query: 963 VNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIK 1021
VN F HGSLVM+ L ++ +V+ GTVNG+IG++ SL Y L +Q L KVIK
Sbjct: 1004 VNVFCHGSLVMQNLGETSTPTQGSVLLGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIK 1063
Query: 1022 GVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN---------- 1071
VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+ +
Sbjct: 1064 SVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKRE 1123
Query: 1072 VSVEELCKRVEELTRLH 1088
+ ++L K VEELTR+H
Sbjct: 1124 ATADDLIKVVEELTRIH 1140
>UNIPROTKB|F1P4I8 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10
GO:GO:0003676 GeneTree:ENSGT00530000063396 EMBL:AADN02017118
EMBL:AADN02017119 IPI:IPI00818299 Ensembl:ENSGALT00000008352
ArrayExpress:F1P4I8 Uniprot:F1P4I8
Length = 1120
Score = 2022 (716.8 bits), Expect = 3.5e-306, Sum P(2) = 3.5e-306
Identities = 392/720 (54%), Positives = 527/720 (73%)
Query: 22 GNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIATLELFRPHGEAQDFLFIA 81
G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+ A +ELFRP GE++D LFI
Sbjct: 1 GHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKTAVMELFRPKGESKDLLFIL 60
Query: 82 TERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLF 139
T +Y C+L++ + ++ ++ITRA G+V DRIGRP++ G IGIIDP+CR+IGL LYDGLF
Sbjct: 61 TAKYNACILEYKQNGDNIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLF 120
Query: 140 KVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLYQDNKDARHVKTYEVALKD 199
KVIP D + + +AFNIRLEELQV+D+KFLYGC PTI +YQD + RHVKTYEV+L++
Sbjct: 121 KVIPLDRENKELKAFNIRLEELQVIDVKFLYGCQAPTICFVYQDPQ-GRHVKTYEVSLRE 179
Query: 200 KDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCSANAFKAI--PI-RPSITK 256
K+F +GPW Q N++ A ++I VP P G +IIG+E+I Y + + + AI PI + S
Sbjct: 180 KEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIV 239
Query: 257 AYGRVDADGSRYXXXXXXXXXXXXVITHEKEK---VT--GLKIELLGETSIASTISYLDN 311
+ RVD +GSRY ++ E++ VT L++ELLGETSIA ++YLDN
Sbjct: 240 CHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDN 299
Query: 312 AVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCS 371
VV++GS GDSQL+KLN+ + +GSYV +E + NLGPIVD CVVDLERQGQGQ+VTCS
Sbjct: 300 GVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCS 359
Query: 372 GAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMN 431
GA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS + D LV+SF+ +TR+L +N
Sbjct: 360 GAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDSHREMDNMLVLSFVGQTRVLMLN 419
Query: 432 LXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSV 491
GF QT FC + + QL+Q+TS SVRLVS + L +EWK P G ++
Sbjct: 420 -GEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPNGKNI 478
Query: 492 NVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAA 551
+VA+ N++QV++A G L YLEI L ++ ++E+E++CLDI P+G+ S + A
Sbjct: 479 SVASCNSNQVVVAVGRA-LYYLEIRPQELRQINCTEMEHEVACLDITPLGDTNGMSPLCA 537
Query: 552 VGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLN 611
+G+WTDIS RI LP L+ KE LGGEIIPRS+L+ FE YLLCALGDG L F L+
Sbjct: 538 IGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLS 597
Query: 612 MKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVS 671
++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV+
Sbjct: 598 LETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVN 657
Query: 672 HMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICS 731
+MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL E PR+IC+QE S+ F + S
Sbjct: 658 YMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLS 717
Score = 940 (336.0 bits), Expect = 3.5e-306, Sum P(2) = 3.5e-306
Identities = 194/377 (51%), Positives = 254/377 (67%)
Query: 724 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 782
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 748 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 807
Query: 783 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK 842
Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN
Sbjct: 808 YFIVGTAMVYPEEAEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINST 867
Query: 843 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 902
++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG E
Sbjct: 868 VRLYEWTAE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE 923
Query: 903 ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEF 962
E ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG HLGEF
Sbjct: 924 EIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLSHLGEF 983
Query: 963 VNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIK 1021
VN F HGSLVM+ L + +V+FGTVNG+IG++ SL Y L +Q L KVIK
Sbjct: 984 VNVFCHGSLVMQNLGEKSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIK 1043
Query: 1022 GVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNV--------- 1072
VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+ + +
Sbjct: 1044 SVGKIEHATWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKRE 1103
Query: 1073 -SVEELCKRVEELTRLH 1088
+V++L K VEELTR+H
Sbjct: 1104 ATVDDLIKIVEELTRIH 1120
>UNIPROTKB|F1NVV2 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000075 "cell cycle
checkpoint" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016055 "Wnt receptor signaling pathway" evidence=IEA]
[GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IEA]
[GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=IEA]
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
GO:GO:0003676 GO:GO:0042787 GO:GO:0000075 GO:GO:0031464
GO:GO:0031465 OMA:CALGDGS GeneTree:ENSGT00530000063396
IPI:IPI00597295 EMBL:AADN02017118 EMBL:AADN02017119
Ensembl:ENSGALT00000040605 ArrayExpress:F1NVV2 Uniprot:F1NVV2
Length = 1123
Score = 2022 (716.8 bits), Expect = 6.6e-305, Sum P(2) = 6.6e-305
Identities = 392/720 (54%), Positives = 527/720 (73%)
Query: 22 GNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIATLELFRPHGEAQDFLFIA 81
G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+ A +ELFRP GE++D LFI
Sbjct: 1 GHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKTAVMELFRPKGESKDLLFIL 60
Query: 82 TERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLF 139
T +Y C+L++ + ++ ++ITRA G+V DRIGRP++ G IGIIDP+CR+IGL LYDGLF
Sbjct: 61 TAKYNACILEYKQNGDNIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLF 120
Query: 140 KVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLYQDNKDARHVKTYEVALKD 199
KVIP D + + +AFNIRLEELQV+D+KFLYGC PTI +YQD + RHVKTYEV+L++
Sbjct: 121 KVIPLDRENKELKAFNIRLEELQVIDVKFLYGCQAPTICFVYQDPQ-GRHVKTYEVSLRE 179
Query: 200 KDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCSANAFKAI--PI-RPSITK 256
K+F +GPW Q N++ A ++I VP P G +IIG+E+I Y + + + AI PI + S
Sbjct: 180 KEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIV 239
Query: 257 AYGRVDADGSRYXXXXXXXXXXXXVITHEKEK---VT--GLKIELLGETSIASTISYLDN 311
+ RVD +GSRY ++ E++ VT L++ELLGETSIA ++YLDN
Sbjct: 240 CHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDN 299
Query: 312 AVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCS 371
VV++GS GDSQL+KLN+ + +GSYV +E + NLGPIVD CVVDLERQGQGQ+VTCS
Sbjct: 300 GVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCS 359
Query: 372 GAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMN 431
GA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS + D LV+SF+ +TR+L +N
Sbjct: 360 GAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDSHREMDNMLVLSFVGQTRVLMLN 419
Query: 432 LXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSV 491
GF QT FC + + QL+Q+TS SVRLVS + L +EWK P G ++
Sbjct: 420 -GEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPNGKNI 478
Query: 492 NVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAA 551
+VA+ N++QV++A G L YLEI L ++ ++E+E++CLDI P+G+ S + A
Sbjct: 479 SVASCNSNQVVVAVGRA-LYYLEIRPQELRQINCTEMEHEVACLDITPLGDTNGMSPLCA 537
Query: 552 VGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLN 611
+G+WTDIS RI LP L+ KE LGGEIIPRS+L+ FE YLLCALGDG L F L+
Sbjct: 538 IGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLS 597
Query: 612 MKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVS 671
++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV+
Sbjct: 598 LETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVN 657
Query: 672 HMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICS 731
+MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL E PR+IC+QE S+ F + S
Sbjct: 658 YMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLS 717
Score = 928 (331.7 bits), Expect = 6.6e-305, Sum P(2) = 6.6e-305
Identities = 194/380 (51%), Positives = 254/380 (66%)
Query: 724 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 782
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 748 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 807
Query: 783 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK 842
Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN
Sbjct: 808 YFIVGTAMVYPEEAEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINST 867
Query: 843 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 902
++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG E
Sbjct: 868 VRLYEWTAE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE 923
Query: 903 ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEF 962
E ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG HLGEF
Sbjct: 924 EIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLSHLGEF 983
Query: 963 VNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIK 1021
VN F HGSLVM+ L + +V+FGTVNG+IG++ SL Y L +Q L KVIK
Sbjct: 984 VNVFCHGSLVMQNLGEKSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIK 1043
Query: 1022 GVGGLNHE---QWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNV------ 1072
VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+ + +
Sbjct: 1044 SVGKIEHSLYATWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGM 1103
Query: 1073 ----SVEELCKRVEELTRLH 1088
+V++L K VEELTR+H
Sbjct: 1104 KREATVDDLIKIVEELTRIH 1123
>UNIPROTKB|F1NVV3 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10
GO:GO:0003676 GeneTree:ENSGT00530000063396 EMBL:AADN02017118
EMBL:AADN02017119 IPI:IPI00821712 Ensembl:ENSGALT00000040604
ArrayExpress:F1NVV3 Uniprot:F1NVV3
Length = 1119
Score = 2022 (716.8 bits), Expect = 9.6e-304, Sum P(2) = 9.6e-304
Identities = 392/720 (54%), Positives = 527/720 (73%)
Query: 22 GNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIATLELFRPHGEAQDFLFIA 81
G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+ A +ELFRP GE++D LFI
Sbjct: 1 GHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKTAVMELFRPKGESKDLLFIL 60
Query: 82 TERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLF 139
T +Y C+L++ + ++ ++ITRA G+V DRIGRP++ G IGIIDP+CR+IGL LYDGLF
Sbjct: 61 TAKYNACILEYKQNGDNIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLF 120
Query: 140 KVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLYQDNKDARHVKTYEVALKD 199
KVIP D + + +AFNIRLEELQV+D+KFLYGC PTI +YQD + RHVKTYEV+L++
Sbjct: 121 KVIPLDRENKELKAFNIRLEELQVIDVKFLYGCQAPTICFVYQDPQ-GRHVKTYEVSLRE 179
Query: 200 KDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCSANAFKAI--PI-RPSITK 256
K+F +GPW Q N++ A ++I VP P G +IIG+E+I Y + + + AI PI + S
Sbjct: 180 KEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIV 239
Query: 257 AYGRVDADGSRYXXXXXXXXXXXXVITHEKEK---VT--GLKIELLGETSIASTISYLDN 311
+ RVD +GSRY ++ E++ VT L++ELLGETSIA ++YLDN
Sbjct: 240 CHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDN 299
Query: 312 AVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCS 371
VV++GS GDSQL+KLN+ + +GSYV +E + NLGPIVD CVVDLERQGQGQ+VTCS
Sbjct: 300 GVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCS 359
Query: 372 GAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMN 431
GA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS + D LV+SF+ +TR+L +N
Sbjct: 360 GAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDSHREMDNMLVLSFVGQTRVLMLN 419
Query: 432 LXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSV 491
GF QT FC + + QL+Q+TS SVRLVS + L +EWK P G ++
Sbjct: 420 -GEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPNGKNI 478
Query: 492 NVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAA 551
+VA+ N++QV++A G L YLEI L ++ ++E+E++CLDI P+G+ S + A
Sbjct: 479 SVASCNSNQVVVAVGRA-LYYLEIRPQELRQINCTEMEHEVACLDITPLGDTNGMSPLCA 537
Query: 552 VGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLN 611
+G+WTDIS RI LP L+ KE LGGEIIPRS+L+ FE YLLCALGDG L F L+
Sbjct: 538 IGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLS 597
Query: 612 MKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVS 671
++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV+
Sbjct: 598 LETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVN 657
Query: 672 HMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICS 731
+MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL E PR+IC+QE S+ F + S
Sbjct: 658 YMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLS 717
Score = 917 (327.9 bits), Expect = 9.6e-304, Sum P(2) = 9.6e-304
Identities = 192/377 (50%), Positives = 253/377 (67%)
Query: 724 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 782
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 748 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 807
Query: 783 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK 842
Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN
Sbjct: 808 YFIVGTAMVYPEEAEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINST 867
Query: 843 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 902
++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG E
Sbjct: 868 VRLYEWTAE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE 923
Query: 903 ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEF 962
E ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG HLGEF
Sbjct: 924 EIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLSHLGEF 983
Query: 963 VNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIK 1021
VN F HGSLVM+ L + +V+FGTVNG+IG++ SL Y L +Q L KVIK
Sbjct: 984 VNVFCHGSLVMQNLGEKSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIK 1043
Query: 1022 GVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNV--------- 1072
VG + H + SF+ E+KT A F+DGDLIESFLD+SR +M E+ + +
Sbjct: 1044 SVGKIEHSLY-SFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKRE 1102
Query: 1073 -SVEELCKRVEELTRLH 1088
+V++L K VEELTR+H
Sbjct: 1103 ATVDDLIKIVEELTRIH 1119
>UNIPROTKB|J9NVR7 [details] [associations]
symbol:DDB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10
GO:GO:0003676 GeneTree:ENSGT00530000063396 EMBL:AAEX03011677
Ensembl:ENSCAFT00000049486 Uniprot:J9NVR7
Length = 1084
Score = 2083 (738.3 bits), Expect = 8.1e-298, Sum P(2) = 8.1e-298
Identities = 406/738 (55%), Positives = 538/738 (72%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+IA
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIA 62
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIG 121
+ELFRP GE++D LFI T +Y C+L++ ES ++ITRA G+V DRIGRP++ G IG
Sbjct: 63 VMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIG 122
Query: 122 IIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181
IIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC PTI +Y
Sbjct: 123 IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVY 182
Query: 182 QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS 241
QD + RHVKTYEV+L++K+F +GPW Q N++ A ++I VP P G +IIG+E+I Y +
Sbjct: 183 QDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHN 241
Query: 242 ANAFKAI--PI-RPSITKAYGRVDADGSRYXXXXXXXXXXXXVITHEKEK---VT--GLK 293
+ + AI PI + S + RVD +GSRY ++ E++ VT L+
Sbjct: 242 GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR 301
Query: 294 IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVD 353
+ELLGETSIA ++YLDN VV++GS GDSQL+KLN+ + +GSYV +E + NLGPIVD
Sbjct: 302 VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVD 361
Query: 354 FCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPF 413
CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS +
Sbjct: 362 MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRET 421
Query: 414 DTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVS 473
D LV+SF+ +TR+L +N GF QT FC + + QL+Q+TS SVRLVS
Sbjct: 422 DDTLVLSFVGQTRVLMLN-GEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 480
Query: 474 STSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIS 533
+ L +EWK P G +++VA+ N+SQV++A G L YL+I L ++ H ++E+E++
Sbjct: 481 QEPKALVSEWKEPQGKNISVASCNSSQVVVAVGRA-LYYLQIHPQELRQISHTEMEHEVA 539
Query: 534 CLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGI 593
CLDI P+G++ S + A+G+WTDIS RI LP L+ KE LGGEIIPRS+L+ FE
Sbjct: 540 CLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESS 599
Query: 594 SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI 653
YLLCALGDG L F LN++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTVI
Sbjct: 600 HYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVI 659
Query: 654 YSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE 713
YSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL E
Sbjct: 660 YSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYE 719
Query: 714 HPRRICHQEQSRTFAICS 731
PR+IC+QE S+ F + S
Sbjct: 720 SPRKICYQEVSQCFGVLS 737
Score = 800 (286.7 bits), Expect = 8.1e-298, Sum P(2) = 8.1e-298
Identities = 164/321 (51%), Positives = 216/321 (67%)
Query: 724 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 782
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 768 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 827
Query: 783 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK 842
Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN
Sbjct: 828 YFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINST 887
Query: 843 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 902
++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG E
Sbjct: 888 VRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE 943
Query: 903 ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEF 962
E ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEF
Sbjct: 944 EIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEF 1003
Query: 963 VNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIK 1021
VN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK
Sbjct: 1004 VNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIK 1063
Query: 1022 GVGGLNHEQWRSFNNEKKTVD 1042
VG + H + S + VD
Sbjct: 1064 SVGKIEHSLYPSQRHVPAQVD 1084
>UNIPROTKB|F5GY55 [details] [associations]
symbol:DDB1 "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10
GO:GO:0003676 EMBL:AP003108 HGNC:HGNC:2717 ChiTaRS:DDB1
EMBL:AP003037 IPI:IPI00977083 SMR:F5GY55 Ensembl:ENST00000540166
Uniprot:F5GY55
Length = 1092
Score = 2077 (736.2 bits), Expect = 1.2e-296, Sum P(2) = 1.2e-296
Identities = 405/738 (54%), Positives = 537/738 (72%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+IA
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIA 62
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIG 121
+ELFRP GE++D LFI T +Y C+L++ ES ++ITRA G+V DRIGRP++ G IG
Sbjct: 63 VMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIG 122
Query: 122 IIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181
IIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC PTI +Y
Sbjct: 123 IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVY 182
Query: 182 QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS 241
QD + RHVKTYEV+L++K+F +GPW Q N++ A ++I VP P G +IIG+E+I Y +
Sbjct: 183 QDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHN 241
Query: 242 ANAFKAI--PI-RPSITKAYGRVDADGSRYXXXXXXXXXXXXVITHEKEK---VT--GLK 293
+ + AI PI + S + RVD +GSRY ++ E++ VT L+
Sbjct: 242 GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR 301
Query: 294 IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVD 353
+ELLGETSIA ++YLDN VV++GS GDSQL+KLN+ + +GSYV +E + NLGPIVD
Sbjct: 302 VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVD 361
Query: 354 FCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPF 413
CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS +
Sbjct: 362 MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRET 421
Query: 414 DTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVS 473
D LV+SF+ +TR+L +N GF QT FC + + QL+Q+TS SVRLVS
Sbjct: 422 DDTLVLSFVGQTRVLMLN-GEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 480
Query: 474 STSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIS 533
+ L +EWK P +++VA+ N+SQV++A G L YL+I L ++ H ++E+E++
Sbjct: 481 QEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRA-LYYLQIHPQELRQISHTEMEHEVA 539
Query: 534 CLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGI 593
CLDI P+G++ S + A+G+WTDIS RI LP L+ KE LGGEIIPRS+L+ FE
Sbjct: 540 CLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESS 599
Query: 594 SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI 653
YLLCALGDG L F LN++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTVI
Sbjct: 600 HYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVI 659
Query: 654 YSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE 713
YSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL E
Sbjct: 660 YSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYE 719
Query: 714 HPRRICHQEQSRTFAICS 731
PR+IC+QE S+ F + S
Sbjct: 720 SPRKICYQEVSQCFGVLS 737
Score = 795 (284.9 bits), Expect = 1.2e-296, Sum P(2) = 1.2e-296
Identities = 161/307 (52%), Positives = 211/307 (68%)
Query: 724 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 782
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 768 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 827
Query: 783 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK 842
Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN
Sbjct: 828 YFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINST 887
Query: 843 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 902
++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG E
Sbjct: 888 VRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE 943
Query: 903 ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEF 962
E ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEF
Sbjct: 944 EIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEF 1003
Query: 963 VNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIK 1021
VN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK
Sbjct: 1004 VNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIK 1063
Query: 1022 GVGGLNH 1028
VG + H
Sbjct: 1064 SVGKIEH 1070
>FB|FBgn0260962 [details] [associations]
symbol:pic "piccolo" species:7227 "Drosophila melanogaster"
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0006289
"nucleotide-excision repair" evidence=ISS;NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] [GO:0035220 "wing disc development"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=ISS] [GO:0007307 "eggshell
chorion gene amplification" evidence=IDA] [GO:0007095 "mitotic G2
DNA damage checkpoint" evidence=IGI] InterPro:IPR004871
Pfam:PF03178 UniPathway:UPA00143 EMBL:AE014297 GO:GO:0005634
GO:GO:0005737 GO:GO:0007095 GO:GO:0043161 GO:GO:0003677
GO:GO:0006281 GO:GO:0035220 GO:GO:0042787 GO:GO:0007307
eggNOG:NOG247734 KO:K10610 OMA:CALGDGS GeneTree:ENSGT00530000063396
HSSP:Q16531 EMBL:AF132145 RefSeq:NP_650257.1 UniGene:Dm.3215
ProteinModelPortal:Q9XYZ5 SMR:Q9XYZ5 STRING:Q9XYZ5 PaxDb:Q9XYZ5
PRIDE:Q9XYZ5 EnsemblMetazoa:FBtr0082709 GeneID:41611
KEGG:dme:Dmel_CG7769 UCSC:CG7769-RA CTD:41611 FlyBase:FBgn0260962
InParanoid:Q9XYZ5 OrthoDB:EOG4S1RP0 PhylomeDB:Q9XYZ5
GenomeRNAi:41611 NextBio:824642 Bgee:Q9XYZ5 Uniprot:Q9XYZ5
Length = 1140
Score = 1856 (658.4 bits), Expect = 2.1e-268, Sum P(2) = 2.1e-268
Identities = 368/739 (49%), Positives = 506/739 (68%)
Query: 5 NYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIAT 64
+YVVTA KPT V GNFTSP +LNLIIA+ ++EI L+TP+GL+P+ ++ I G IA
Sbjct: 4 HYVVTAQKPTAVVACLTGNFTSPTDLNLIIARNNQVEIDLVTPEGLRPLKEININGTIAV 63
Query: 65 LELFRPHGEAQDFLFIATERYKFCVLQWDAESSEL--ITRAMGDVSDRIGRPTDNGQIGI 122
+ FRP +D LFI T RY +L+ + + +T+A G+VSD +G P++ G I
Sbjct: 64 MRHFRPPDSNKDLLFILTRRYNVMILEARMVNDVITVVTKANGNVSDSVGIPSEGGVIAA 123
Query: 123 IDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLYQ 182
IDP R+IG+ LY GLF +IP D +A N+R++EL V D++FL+GC PT++V+++
Sbjct: 124 IDPKARVIGMCLYQGLFTIIPMDKDASELKATNLRMDELNVYDVEFLHGCLNPTVIVIHK 183
Query: 183 DNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCSA 242
D+ D RHVK++E+ L+DK+F++ W Q+N++ A +LIPVP P+ GV++IG E+IVY
Sbjct: 184 DS-DGRHVKSHEINLRDKEFMKIAWKQDNVETEATMLIPVPSPIGGVIVIGRESIVYHDG 242
Query: 243 NAFKAI-PI--RPSITKAYGRVDADGSRYXXXXXXXXXXXXVI-THEKEK---VTGLKIE 295
+ + A+ P+ R S Y RV ++G RY + T E K V +K+E
Sbjct: 243 SNYHAVAPLTFRQSTINCYARVSSNGLRYLLGNMDGQLYMLFLGTAETSKGVTVKDIKVE 302
Query: 296 LLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFC 355
LGE SI I+YLDN +YIG+ +GDSQL++LN + GSYV +E + NL PI+D
Sbjct: 303 QLGEISIPECITYLDNGFLYIGARHGDSQLVRLNSEA-IDGSYVVPVENFTNLAPILDIA 361
Query: 356 VVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDD-PFD 414
VVDL+RQGQGQ++TCSG++KDGSLRI+R GIGI E A ++L GIKGMWSL+ D+ P++
Sbjct: 362 VVDLDRQGQGQIITCSGSFKDGSLRIIRIGIGIQEHACIDLPGIKGMWSLKVGVDESPYE 421
Query: 415 TFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSS 474
LV++F+ TRIL ++ GF S QT C + Y+QL+QVTS SVRLVSS
Sbjct: 422 NTLVLAFVGHTRILTLS-GEEVEETEIPGFASDLQTFLCSNVDYDQLIQVTSDSVRLVSS 480
Query: 475 TSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISC 534
++ L EW+ ++ V + N +Q+L+A+ + Y+ I DG L E L YE++C
Sbjct: 481 ATKALVAEWRPTGDRTIGVVSCNTTQILVASACD-IFYIVIEDGSLREQSRRTLAYEVAC 539
Query: 535 LDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGIS 594
LDI P+ E S + AVG+WTDIS I SLPDL I E L GEIIPRS+L+ FEGI
Sbjct: 540 LDITPLDETQKKSDLVAVGLWTDISAVILSLPDLETIYTEKLSGEIIPRSILMTTFEGIH 599
Query: 595 YLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIY 654
YLLCALGDG + F+++ TG+LTD+KKV+LGTQP TLRTF S +TT+VFA SDRPTVIY
Sbjct: 600 YLLCALGDGSMYYFIMDQTTGQLTDKKKVTLGTQPTTLRTFRSLSTTNVFACSDRPTVIY 659
Query: 655 SSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEH 714
SSN KL++SNVNLKEV+HMC N+ A+PDSLA+A + + +GTID+IQKLHIR++PLGE
Sbjct: 660 SSNHKLVFSNVNLKEVNHMCSLNAQAYPDSLALANKNAVILGTIDEIQKLHIRTVPLGEG 719
Query: 715 PRRICHQEQSRTFAICSLK 733
PRRI +QE S+TFA+ +L+
Sbjct: 720 PRRIAYQESSQTFAVSTLR 738
Score = 749 (268.7 bits), Expect = 2.1e-268, Sum P(2) = 2.1e-268
Identities = 160/369 (43%), Positives = 225/369 (60%)
Query: 734 NQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLP 793
N +E ++H + ++D TFE + + E S++S DD N YY V T+ V+P
Sbjct: 780 NAEVGQEIDVHNLLVIDQNTFEVLHAHQFVAPETISSLMSAKLGDDPNTYYVVATSLVIP 839
Query: 794 EENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDD 853
EE EP GRI++F + KL +AE + G Y+L FNGK+LA I ++LY+W
Sbjct: 840 EEPEPKVGRIIIFHYHENKLTQVAETKVDGTCYALVEFNGKVLAGIGSFVRLYEWT---- 895
Query: 854 GTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWM 913
+EL+ EC I AL+++ +GDFI+VGDLM+SI+LL +K EG E ARD WM
Sbjct: 896 NEKELRMECNIQNMIAALFLKAKGDFILVGDLMRSITLLQHKQMEGIFVEIARDCEPKWM 955
Query: 914 SAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVM 973
AVEILDDD +LG+E N NLF +K+S TDEER L + +HLG+ VN FRHGSLVM
Sbjct: 956 RAVEILDDDTFLGSETNGNLFVCQKDSAATTDEERQLLPELARFHLGDTVNVFRHGSLVM 1015
Query: 974 RLPDSDVGQIPT-----VIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNH 1028
+ +VG+ T V++GT NG IG++ +P + Y FL L+ L+K+IK VG + H
Sbjct: 1016 Q----NVGERTTPINGCVLYGTCNGAIGIVTQIPQDFYDFLHGLEERLKKIIKSVGKIEH 1071
Query: 1029 EQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDE----ISKTMN-----VSVEELCK 1079
+R+F K ++ F+DGDLIESFLDLSR +M + + T+N VE++ K
Sbjct: 1072 TYYRNFQINSKVEPSEGFIDGDLIESFLDLSRDKMRDAVQGLELTLNGERKSADVEDVIK 1131
Query: 1080 RVEELTRLH 1088
VE+LTR+H
Sbjct: 1132 IVEDLTRMH 1140
>DICTYBASE|DDB_G0286013 [details] [associations]
symbol:repE "UV-damaged DNA binding protein1"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA;ISS;IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA;IEP]
[GO:0006289 "nucleotide-excision repair" evidence=ISS] [GO:0003684
"damaged DNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
InterPro:IPR017986 InterPro:IPR004871 Pfam:PF03178
UniPathway:UPA00143 dictyBase:DDB_G0286013 GO:GO:0005634
GO:GO:0005737 GenomeReviews:CM000153_GR SUPFAM:SSF50978
GO:GO:0003684 GO:GO:0016567 EMBL:AAFI02000085 GO:GO:0006289
eggNOG:NOG247734 KO:K10610 OMA:CALGDGS EMBL:U50042 PIR:S71092
RefSeq:XP_637896.2 STRING:B0M0P5 EnsemblProtists:DDB0191144
GeneID:8625406 KEGG:ddi:DDB_G0286013 ProtClustDB:CLSZ2430134
Uniprot:B0M0P5
Length = 1181
Score = 835 (299.0 bits), Expect = 7.0e-267, Sum P(4) = 7.0e-267
Identities = 178/412 (43%), Positives = 257/412 (62%)
Query: 411 DPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCH--DAIYNQLVQVTSGS 468
D D +L+ SFI T++L+ G S TL+C D + N L+Q+T+ S
Sbjct: 471 DSKDRYLITSFIECTKVLSFQ-GEEIEETEFEGLESNCSTLYCGTIDKL-NLLIQITNVS 528
Query: 469 VRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDG--ILTEVKHA 526
+ L+ S + + ++W P +N+ + N Q++L+ L+Y +I + VK
Sbjct: 529 INLIDSNTFKRVSQWNVEPSRRINLVSTNQDQIVLSIDKS-LLYFQINSSNKSIQLVKEI 587
Query: 527 QLEYEISCLDINPIGE-NPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSV 585
+L +EISC+DI+P + SQ+ +VG+W DI++RIF LP L I KE LGGEI+PRS+
Sbjct: 588 ELPHEISCIDISPFDSFMDTKSQLVSVGLWNDITLRIFKLPTLEEIWKEPLGGEILPRSI 647
Query: 586 LLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFA 645
L+ +F+ I Y+ C+LGDGHL F + + +L D++K++LGTQPI L+ F KNT ++FA
Sbjct: 648 LMISFDSIDYIFCSLGDGHLFKFQFDFSSFKLFDKRKLTLGTQPIILKKFKLKNTINIFA 707
Query: 646 ASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLH 705
SDRPTVIYS NKKL YS VNLK+V+++ FNS FP+S+AIA LTIGTID+IQKLH
Sbjct: 708 ISDRPTVIYSHNKKLFYSVVNLKDVTNVTSFNSDGFPNSMAIATTNSLTIGTIDEIQKLH 767
Query: 706 IRSIPLGEHP-RRICHQEQSRTFAICSLKNQS---------CAEESEMHFVRLLDDQTFE 755
I++IPL E RRI H E +A+ ++KN C E+ E+ ++R+ +DQTFE
Sbjct: 768 IKTIPLNEEMGRRIVHLEDHSCYAVITVKNNEGLLGGAQDLCEEDEEVSYIRIYNDQTFE 827
Query: 756 FISTYPLDTFEYGCSILSCSFS-DDSNVYYCVGTAYVLPEENEPTKGRILVF 806
IS+Y LD +E G SI C F+ DD N Y VGT+ P ++ GR+L+F
Sbjct: 828 LISSYKLDPYEMGWSITPCKFAGDDVNTYLAVGTSINTPIKSS---GRVLLF 876
Score = 711 (255.3 bits), Expect = 7.0e-267, Sum P(4) = 7.0e-267
Identities = 140/264 (53%), Positives = 187/264 (70%)
Query: 151 KEAFNIRLEELQVLDIKFLYGCAKPTIVVLYQDNKDARHVKTYEVALKDKDFVEGPWSQN 210
K N+RLEELQVLD+ FLYGC PTI VL++D KD +H+ TYE++ KD + V GPWSQ+
Sbjct: 191 KNVNNVRLEELQVLDMTFLYGCKVPTIAVLFKDTKDEKHISTYEISSKDTELVVGPWSQS 250
Query: 211 NLDNGADLLIPVPPPLCGVLIIGEETIVYCSANAFKAIPIRPSITK--AYGRVDADGSRY 268
N+ + LL+PVP L GVL++ + I Y + +++ + S TK A+ RVD DGSR+
Sbjct: 251 NVGVYSSLLVPVP--LGGVLVVADNGITYLNGKVTRSVAV--SYTKFLAFTRVDKDGSRF 306
Query: 269 XXXXXXXXXXXXVITHEKEKVTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQLIKL 328
V+ H+++KV LK E LG SI S+ISYLD+ VVYIGSS GDSQLI+L
Sbjct: 307 LFGDHFGRLSVLVLIHQQQKVMELKFEQLGRISIPSSISYLDSGVVYIGSSSGDSQLIRL 366
Query: 329 NLQPD-AKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIG 387
N + D SYV LE + N+GP+VDFCVVD E+QGQ Q+VTCSG Y+DGSLRI+RNGIG
Sbjct: 367 NTEKDQTTDSYVTYLEAFTNIGPVVDFCVVDAEKQGQAQIVTCSGTYRDGSLRIIRNGIG 426
Query: 388 INEQASVELQGIKGMWSLRSSTDD 411
I EQAS+EL+GIKG++ + ++ ++
Sbjct: 427 IAEQASIELEGIKGIFPINNNNNN 450
Score = 619 (223.0 bits), Expect = 7.0e-267, Sum P(4) = 7.0e-267
Identities = 116/276 (42%), Positives = 190/276 (68%)
Query: 810 DGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWM-LRDDGTRELQSECGHHGHI 868
+GKL L+ E + + +VY L +FNG+L+AA+++++ ++ ++ + + SE H GH
Sbjct: 903 NGKLTLLEEIKFRSSVYFLLSFNGRLIAAVHKRLFSIRYTHSKEKNCKVISSESVHKGHT 962
Query: 869 LALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAE 928
+ L + +RG FI+VGD+MKS+SLL+ + +G++E+ AR+ W+ +V +++DD ++GAE
Sbjct: 963 MILKLASRGHFILVGDMMKSMSLLV-EQSDGSLEQIARNPQPIWIRSVAMINDDYFIGAE 1021
Query: 929 NNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIF 988
+ N V+KN++ + ER L+ VG YH+GE +N RHGSLV RLPDSD IPT+++
Sbjct: 1022 ASNNFIVVKKNNDSTNELERELLDSVGHYHIGESINSMRHGSLV-RLPDSDQPIIPTILY 1080
Query: 989 GTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLD 1048
+VNG IGV+AS+ E ++F KLQ L +V++GVGG +HE WR+F+N+ T+D+KNF+D
Sbjct: 1081 ASVNGSIGVVASISEEDFIFFSKLQKGLNQVVRGVGGFSHETWRAFSNDHHTIDSKNFID 1140
Query: 1049 GDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL 1084
GDLIE+FLDL + + ++ ++ +R+E L
Sbjct: 1141 GDLIETFLDLKYESQLKAVADLGITPDDAFRRIESL 1176
Score = 463 (168.0 bits), Expect = 7.0e-267, Sum P(4) = 7.0e-267
Identities = 84/144 (58%), Positives = 109/144 (75%)
Query: 3 IWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRI 62
++N+V T KPT+VTHS GNFT P + NLII+KCT+IEI L+ GL+PM DV IYGRI
Sbjct: 1 MYNFVSTVQKPTSVTHSVTGNFTGPNDKNLIISKCTKIEIFLMDQDGLKPMFDVNIYGRI 60
Query: 63 ATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIGRPTDNGQIGI 122
+ L+LF G QD+LFI+TE +KFC+L +D E E+IT+A G+ D IGRPT+ GQ+GI
Sbjct: 61 SVLKLFSVAGSKQDYLFISTESFKFCILAYDYEKKEIITKASGNAEDTIGRPTEAGQLGI 120
Query: 123 IDPDCRLIGLHLYDGLFKVIPFDN 146
IDPD R++ LHLY+GL K+I DN
Sbjct: 121 IDPDGRIVALHLYEGLLKLITLDN 144
Score = 45 (20.9 bits), Expect = 3.1e-39, Sum P(2) = 3.1e-39
Identities = 44/210 (20%), Positives = 82/210 (39%)
Query: 873 VQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDY--NANWMSAVEILDDDI-YLGAEN 929
V G + GD +S+L+ H++ + E + + S++ LD + Y+G+ +
Sbjct: 299 VDKDGSRFLFGDHFGRLSVLVLIHQQQKVMELKFEQLGRISIPSSISYLDSGVVYIGSSS 358
Query: 930 -NFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIF 988
+ L + + TD LE ++G V+ F V+ QI T
Sbjct: 359 GDSQLIRLNTEKDQTTDSYVTYLEAFT--NIGPVVD-F----CVVDAEKQGQAQIVTCS- 410
Query: 989 GTV-NGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFL 1047
GT +G + +I + E+ L IKG+ +N+ + NN + N
Sbjct: 411 GTYRDGSLRIIRN----GIGIAEQASIELEG-IKGIFPINNNNNNNNNNNNNNNNNNNNN 465
Query: 1048 DGDLIESFLDLSRTRMDEISKTMNVSVEEL 1077
+ +S T E +K ++ EE+
Sbjct: 466 SNGITDSKDRYLITSFIECTKVLSFQGEEI 495
>WB|WBGene00010890 [details] [associations]
symbol:ddb-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0030163
"protein catabolic process" evidence=IMP] [GO:0007276 "gamete
generation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004871 Pfam:PF03178 UniPathway:UPA00143
GO:GO:0005634 GO:GO:0009792 GO:GO:0006898 GO:GO:0005737
GO:GO:0040010 GO:GO:0002119 GO:GO:0003677 GO:GO:0006281
GO:GO:0040011 GO:GO:0016567 GO:GO:0007049 GO:GO:0040035
InterPro:IPR011047 SUPFAM:SSF50998 GO:GO:0030163 GO:GO:0007276
eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610 OMA:CALGDGS
GeneTree:ENSGT00530000063396 EMBL:Z68507 PIR:A88855 PIR:T23798
RefSeq:NP_502299.1 HSSP:Q16531 ProteinModelPortal:Q21554
DIP:DIP-25884N IntAct:Q21554 MINT:MINT-1055778 STRING:Q21554
PaxDb:Q21554 EnsemblMetazoa:M18.5.1 EnsemblMetazoa:M18.5.2
GeneID:178156 KEGG:cel:CELE_M18.5 UCSC:M18.5 CTD:178156
WormBase:M18.5 InParanoid:Q21554 NextBio:899950 Uniprot:Q21554
Length = 1134
Score = 1119 (399.0 bits), Expect = 2.7e-167, Sum P(2) = 2.7e-167
Identities = 263/760 (34%), Positives = 434/760 (57%)
Query: 5 NYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIAT 64
+Y V+A K + V S VGNFT + +NLI+A+ RI++ L++P+GL+ + ++PIYG++ T
Sbjct: 4 SYCVSAKKASVVVESVVGNFTGHENVNLIVARGNRIDVQLVSPEGLKNVCEIPIYGQVLT 63
Query: 65 LELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIGRPTDNGQIGIID 124
+ L + + + L + TE++ +L + +++TRA G ++D GR TDN +
Sbjct: 64 IALVKCKRDKRHSLIVVTEKWHMAILAY--RDGKVVTRAAGCIADPTGRATDN-LFSLTI 120
Query: 125 PDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL-YGCAKPTIVVLYQD 183
LI + ++G K+I +++ L+ FN+R + V D KF+ G V D
Sbjct: 121 HRNGLIAIRAFEGSVKMIQWESGTDLRH-FNVRFDYPNVSDFKFVDTGEDDVYRVAFIYD 179
Query: 184 NKDARHVKTYEVALKDKDFVEGPWS-QNNLDNGADLLIPVPPPLCGVLIIGEETIVYC-S 241
+ +H++ ++ + DK+F +S Q ++ + +LIPVP + GV+++G +++Y +
Sbjct: 180 DDHGKHLQFSDLNMHDKEF--RTYSRQASIAADSSVLIPVPHAIGGVIVLGSNSVLYKPN 237
Query: 242 ANAFKAIPIRPSITK-----AYGRVDADGSRYXXXXXXXXXXXXV--ITHEKEKVT--GL 292
N + +P S+ + +G VDA G R+ + +T + T +
Sbjct: 238 DNLGEVVPYTCSLLENTTFTCHGIVDASGERFLLSDTDGRLLMLLLNVTESQSGYTVKEM 297
Query: 293 KIELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIV 352
+I+ LGETSIA +I+Y+DN VV++GS GDSQLI+L +P+ GSY +LE Y N+GPI
Sbjct: 298 RIDYLGETSIADSINYIDNGVVFVGSRLGDSQLIRLMTEPNG-GSYSVILETYSNIGPIR 356
Query: 353 DFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDP 412
D +V E GQ Q+VTC+GA KDGSLR++RNGIGI+E ASV+L G+ G++ +R D
Sbjct: 357 DMVMV--ESDGQPQLVTCTGADKDGSLRVIRNGIGIDELASVDLAGVVGIFPIR--LDSN 412
Query: 413 FDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIY-NQ---LVQVTSGS 468
D +++VS ET +L + + T+F N ++Q T
Sbjct: 413 ADNYVIVSLSDETHVLQIT-GEELEDVKLLEINTDLPTIFASTLFGPNDSGIILQATEKQ 471
Query: 469 VRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYL------EIG--DGIL 520
+RL+SS+ L W+ G ++ + NA+ + VYL E+G D L
Sbjct: 472 IRLMSSSG--LSKFWEPTNGEIISKVSVNAANGQIVLAARDTVYLLTCIVDEMGALDIQL 529
Query: 521 TEVKHAQLEYEISCLDINPIGENPSY-SQIAAVGMWTDISVRIFSLPDLNLITKEHLGGE 579
T K + E EI+CLD++ G++P+ + + W+ ++ + LPDL + L +
Sbjct: 530 TAEK--KFENEIACLDLSNEGDDPNNKATFLVLAFWSTFAMEVIQLPDLITVCHTDLPTK 587
Query: 580 IIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKN 639
IIPRS++ E + YLL A GDG L+ ++ ++KTG + KK ++GT+P +L +KN
Sbjct: 588 IIPRSIIATCIEEVHYLLVAFGDGALVYYVFDIKTGTHGEPKKSNVGTRPPSLHRVRNKN 647
Query: 640 TTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTID 699
H+F SDRP +I+S++KKL++SNVN+K V +C +S+A+ D L I+ + GT+D
Sbjct: 648 RQHLFVCSDRPVIIFSASKKLVFSNVNVKLVDTVCSLSSSAYRDCLVISDGNSMVFGTVD 707
Query: 700 DIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAE 739
DIQK+H+RSIP+GE RI +Q+ + T+ +CS + +S AE
Sbjct: 708 DIQKIHVRSIPMGESVLRIAYQKSTSTYGVCSNRTESKAE 747
Score = 530 (191.6 bits), Expect = 2.7e-167, Sum P(2) = 2.7e-167
Identities = 120/354 (33%), Positives = 196/354 (55%)
Query: 748 LLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFI 807
+LD TF+ + ++ +E S +S F++DS+ YY VGT + P+E E GRI+VF
Sbjct: 785 VLDQNTFQVLHSHEFGPWETALSCISGQFTNDSSTYYVVGTGLIYPDETETKIGRIVVFE 844
Query: 808 VED---GKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGH 864
V+D KL+ + E +G+ ++ NGKL+AAIN I+L++W +EL+ EC
Sbjct: 845 VDDVERSKLRRVHELVVRGSPLAIRILNGKLVAAINSSIRLFEWTT----DKELRLECSS 900
Query: 865 HGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIY 924
H++AL ++ + + V D+M+S+SLL Y+ EG EE A+D+N+ WM E + +
Sbjct: 901 FNHVIALDLKVMNEEVAVADVMRSVSLLSYRMLEGNFEEVAKDWNSQWMVTCEFITAESI 960
Query: 925 LGAENNFNLFTVRKN-SEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQI 983
LG E + NLFTV + + TD+ R LE G ++LGE +LV++ DS +
Sbjct: 961 LGGEAHLNLFTVEVDKTRPITDDGRYVLEPTGYWYLGELPKVMTRSTLVIQPEDSIIQYS 1020
Query: 984 PTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDA 1043
++FGT G IG+I + + FL ++ + +K + H +R+F +K+
Sbjct: 1021 QPIMFGTNQGTIGMIVQIDDKWKKFLIAIEKAIADSVKNCMHIEHSSYRTFVFQKRAEPP 1080
Query: 1044 KNFLDGDLIESFLDLSRT-RMDEISKTMNVSVE--------ELCKRVEELTRLH 1088
F+DGDL+ES LD+ R+ MD +SK + + E+ K +E+L R+H
Sbjct: 1081 SGFVDGDLVESILDMDRSVAMDILSKVSDKGWDPSLPRDPVEILKVIEDLARMH 1134
Score = 42 (19.8 bits), Expect = 9.8e-116, Sum P(2) = 9.8e-116
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 681 FPDSLAIAKEGELTIGTIDDIQKLHIRSI 709
+PD K G + + +DD+++ +R +
Sbjct: 829 YPDETE-TKIGRIVVFEVDDVERSKLRRV 856
>UNIPROTKB|Q21554 [details] [associations]
symbol:ddb-1 "DNA damage-binding protein 1" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] InterPro:IPR004871 Pfam:PF03178
UniPathway:UPA00143 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0005737 GO:GO:0040010 GO:GO:0002119 GO:GO:0003677
GO:GO:0006281 GO:GO:0040011 GO:GO:0016567 GO:GO:0007049
GO:GO:0040035 InterPro:IPR011047 SUPFAM:SSF50998 GO:GO:0030163
GO:GO:0007276 eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610
OMA:CALGDGS GeneTree:ENSGT00530000063396 EMBL:Z68507 PIR:A88855
PIR:T23798 RefSeq:NP_502299.1 HSSP:Q16531 ProteinModelPortal:Q21554
DIP:DIP-25884N IntAct:Q21554 MINT:MINT-1055778 STRING:Q21554
PaxDb:Q21554 EnsemblMetazoa:M18.5.1 EnsemblMetazoa:M18.5.2
GeneID:178156 KEGG:cel:CELE_M18.5 UCSC:M18.5 CTD:178156
WormBase:M18.5 InParanoid:Q21554 NextBio:899950 Uniprot:Q21554
Length = 1134
Score = 1119 (399.0 bits), Expect = 2.7e-167, Sum P(2) = 2.7e-167
Identities = 263/760 (34%), Positives = 434/760 (57%)
Query: 5 NYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIAT 64
+Y V+A K + V S VGNFT + +NLI+A+ RI++ L++P+GL+ + ++PIYG++ T
Sbjct: 4 SYCVSAKKASVVVESVVGNFTGHENVNLIVARGNRIDVQLVSPEGLKNVCEIPIYGQVLT 63
Query: 65 LELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIGRPTDNGQIGIID 124
+ L + + + L + TE++ +L + +++TRA G ++D GR TDN +
Sbjct: 64 IALVKCKRDKRHSLIVVTEKWHMAILAY--RDGKVVTRAAGCIADPTGRATDN-LFSLTI 120
Query: 125 PDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL-YGCAKPTIVVLYQD 183
LI + ++G K+I +++ L+ FN+R + V D KF+ G V D
Sbjct: 121 HRNGLIAIRAFEGSVKMIQWESGTDLRH-FNVRFDYPNVSDFKFVDTGEDDVYRVAFIYD 179
Query: 184 NKDARHVKTYEVALKDKDFVEGPWS-QNNLDNGADLLIPVPPPLCGVLIIGEETIVYC-S 241
+ +H++ ++ + DK+F +S Q ++ + +LIPVP + GV+++G +++Y +
Sbjct: 180 DDHGKHLQFSDLNMHDKEF--RTYSRQASIAADSSVLIPVPHAIGGVIVLGSNSVLYKPN 237
Query: 242 ANAFKAIPIRPSITK-----AYGRVDADGSRYXXXXXXXXXXXXV--ITHEKEKVT--GL 292
N + +P S+ + +G VDA G R+ + +T + T +
Sbjct: 238 DNLGEVVPYTCSLLENTTFTCHGIVDASGERFLLSDTDGRLLMLLLNVTESQSGYTVKEM 297
Query: 293 KIELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIV 352
+I+ LGETSIA +I+Y+DN VV++GS GDSQLI+L +P+ GSY +LE Y N+GPI
Sbjct: 298 RIDYLGETSIADSINYIDNGVVFVGSRLGDSQLIRLMTEPNG-GSYSVILETYSNIGPIR 356
Query: 353 DFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDP 412
D +V E GQ Q+VTC+GA KDGSLR++RNGIGI+E ASV+L G+ G++ +R D
Sbjct: 357 DMVMV--ESDGQPQLVTCTGADKDGSLRVIRNGIGIDELASVDLAGVVGIFPIR--LDSN 412
Query: 413 FDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIY-NQ---LVQVTSGS 468
D +++VS ET +L + + T+F N ++Q T
Sbjct: 413 ADNYVIVSLSDETHVLQIT-GEELEDVKLLEINTDLPTIFASTLFGPNDSGIILQATEKQ 471
Query: 469 VRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYL------EIG--DGIL 520
+RL+SS+ L W+ G ++ + NA+ + VYL E+G D L
Sbjct: 472 IRLMSSSG--LSKFWEPTNGEIISKVSVNAANGQIVLAARDTVYLLTCIVDEMGALDIQL 529
Query: 521 TEVKHAQLEYEISCLDINPIGENPSY-SQIAAVGMWTDISVRIFSLPDLNLITKEHLGGE 579
T K + E EI+CLD++ G++P+ + + W+ ++ + LPDL + L +
Sbjct: 530 TAEK--KFENEIACLDLSNEGDDPNNKATFLVLAFWSTFAMEVIQLPDLITVCHTDLPTK 587
Query: 580 IIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKN 639
IIPRS++ E + YLL A GDG L+ ++ ++KTG + KK ++GT+P +L +KN
Sbjct: 588 IIPRSIIATCIEEVHYLLVAFGDGALVYYVFDIKTGTHGEPKKSNVGTRPPSLHRVRNKN 647
Query: 640 TTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTID 699
H+F SDRP +I+S++KKL++SNVN+K V +C +S+A+ D L I+ + GT+D
Sbjct: 648 RQHLFVCSDRPVIIFSASKKLVFSNVNVKLVDTVCSLSSSAYRDCLVISDGNSMVFGTVD 707
Query: 700 DIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAE 739
DIQK+H+RSIP+GE RI +Q+ + T+ +CS + +S AE
Sbjct: 708 DIQKIHVRSIPMGESVLRIAYQKSTSTYGVCSNRTESKAE 747
Score = 530 (191.6 bits), Expect = 2.7e-167, Sum P(2) = 2.7e-167
Identities = 120/354 (33%), Positives = 196/354 (55%)
Query: 748 LLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFI 807
+LD TF+ + ++ +E S +S F++DS+ YY VGT + P+E E GRI+VF
Sbjct: 785 VLDQNTFQVLHSHEFGPWETALSCISGQFTNDSSTYYVVGTGLIYPDETETKIGRIVVFE 844
Query: 808 VED---GKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGH 864
V+D KL+ + E +G+ ++ NGKL+AAIN I+L++W +EL+ EC
Sbjct: 845 VDDVERSKLRRVHELVVRGSPLAIRILNGKLVAAINSSIRLFEWTT----DKELRLECSS 900
Query: 865 HGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIY 924
H++AL ++ + + V D+M+S+SLL Y+ EG EE A+D+N+ WM E + +
Sbjct: 901 FNHVIALDLKVMNEEVAVADVMRSVSLLSYRMLEGNFEEVAKDWNSQWMVTCEFITAESI 960
Query: 925 LGAENNFNLFTVRKN-SEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQI 983
LG E + NLFTV + + TD+ R LE G ++LGE +LV++ DS +
Sbjct: 961 LGGEAHLNLFTVEVDKTRPITDDGRYVLEPTGYWYLGELPKVMTRSTLVIQPEDSIIQYS 1020
Query: 984 PTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDA 1043
++FGT G IG+I + + FL ++ + +K + H +R+F +K+
Sbjct: 1021 QPIMFGTNQGTIGMIVQIDDKWKKFLIAIEKAIADSVKNCMHIEHSSYRTFVFQKRAEPP 1080
Query: 1044 KNFLDGDLIESFLDLSRT-RMDEISKTMNVSVE--------ELCKRVEELTRLH 1088
F+DGDL+ES LD+ R+ MD +SK + + E+ K +E+L R+H
Sbjct: 1081 SGFVDGDLVESILDMDRSVAMDILSKVSDKGWDPSLPRDPVEILKVIEDLARMH 1134
Score = 42 (19.8 bits), Expect = 9.8e-116, Sum P(2) = 9.8e-116
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 681 FPDSLAIAKEGELTIGTIDDIQKLHIRSI 709
+PD K G + + +DD+++ +R +
Sbjct: 829 YPDETE-TKIGRIVVFEVDDVERSKLRRV 856
>UNIPROTKB|F1M680 [details] [associations]
symbol:Ddb1 "DNA damage-binding protein 1" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 RGD:621889
GO:GO:0005634 Gene3D:2.130.10.10 GO:GO:0003676 IPI:IPI00950036
Ensembl:ENSRNOT00000063867 ArrayExpress:F1M680 Uniprot:F1M680
Length = 600
Score = 922 (329.6 bits), Expect = 6.2e-142, Sum P(2) = 6.2e-142
Identities = 192/378 (50%), Positives = 253/378 (66%)
Query: 724 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 782
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 227 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 286
Query: 783 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK 842
Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN
Sbjct: 287 YFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINST 346
Query: 843 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 902
++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG E
Sbjct: 347 VRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE 402
Query: 903 ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEF 962
E ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEF
Sbjct: 403 EIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEF 462
Query: 963 VNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIK 1021
VN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK
Sbjct: 463 VNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIK 522
Query: 1022 GVGGLNHE-QWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN--------- 1071
+ L H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+ +
Sbjct: 523 SLCSLTHLFTWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKR 582
Query: 1072 -VSVEELCKRVEELTRLH 1088
+ ++L K VEELTR+H
Sbjct: 583 EATADDLIKVVEELTRIH 600
Score = 487 (176.5 bits), Expect = 6.2e-142, Sum P(2) = 6.2e-142
Identities = 94/137 (68%), Positives = 113/137 (82%)
Query: 595 YLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIY 654
YLLCALGDG L F LN++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTVIY
Sbjct: 60 YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY 119
Query: 655 SSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEH 714
SSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL E
Sbjct: 120 SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES 179
Query: 715 PRRICHQEQSRTFAICS 731
PR+IC+QE S+ F + S
Sbjct: 180 PRKICYQEVSQCFGVLS 196
>ASPGD|ASPL0000052925 [details] [associations]
symbol:ddbA species:162425 "Emericella nidulans"
[GO:0006282 "regulation of DNA repair" evidence=IEA;ISA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEP;IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0070913 "Ddb1-Wdr21
complex" evidence=IEA] [GO:0008180 "signalosome" evidence=IEA]
[GO:0070912 "Ddb1-Ckn1 complex" evidence=IEA] [GO:0031465
"Cul4B-RING ubiquitin ligase complex" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0040020 "regulation of meiosis" evidence=IEA] [GO:0042787
"protein ubiquitination involved in ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0007090 "regulation of S phase
of mitotic cell cycle" evidence=IEA] [GO:0034644 "cellular response
to UV" evidence=IEA] InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10 EMBL:BN001308
GO:GO:0003676 EMBL:AACD01000007 KO:K10610 OMA:DRPAVIY
OrthoDB:EOG473T0C RefSeq:XP_658200.1 STRING:Q5BFT4
EnsemblFungi:CADANIAT00002078 GeneID:2876375 KEGG:ani:AN0596.2
eggNOG:NOG316722 HOGENOM:HOG000216556 Uniprot:Q5BFT4
Length = 1132
Score = 937 (334.9 bits), Expect = 3.8e-114, Sum P(2) = 3.8e-114
Identities = 279/940 (29%), Positives = 467/940 (49%)
Query: 188 RHVKTYEVALKDKDFVE-GPWSQNNLDNGADLLIPVPPPLC---GVLIIGEETIVYCSA- 242
R +K A + +F ++Q LD GA LIPVP PL G+LI+GE +I Y A
Sbjct: 213 RELKYSTAAGAESEFTSIADYAQE-LDLGASHLIPVPAPLAAAGGLLILGETSIKYVDAD 271
Query: 243 -NAFKAIPIRPS-ITKAYGRVDADGSRYXXXXXXXXXXXXVITHEKEKVTGLKIELLGET 300
N + P+ + I A+ +VD+ R+ ++ +V ++ LG T
Sbjct: 272 NNEIVSQPLEEATIFVAWEQVDSQ--RWLLADDYGRLFFLMLVLRNSEVERWELHSLGNT 329
Query: 301 SIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDL- 359
S AS + YL VV++GS GDSQ+I++ Q S+ +V++ N+ P++DF ++DL
Sbjct: 330 SRASVLVYLGGGVVFVGSHQGDSQVIRIGDQ-----SF-QVIQTLSNIAPVLDFTIMDLG 383
Query: 360 ----ERQ------GQGQVVTCSGAYKDGSLRIVRNGIGINEQASV-ELQGIKGMWSLR-S 407
E Q GQ ++VT SGA+ DG+LR VR+G+G+ E + +++ I +W L+
Sbjct: 384 NRTSENQMHEFSSGQARIVTGSGAFDDGTLRSVRSGVGLEELGVLGDMEHITDLWGLQVG 443
Query: 408 STDDPFDTFLVVSFISETRILAMNLXXXXXXXXXX-GFCSQTQTLFCHDAIYNQLVQVTS 466
S D DT L+V+F++ETR+ + G TL + ++++QVT
Sbjct: 444 SRGDFLDT-LLVTFVNETRVFRFSPDGEAEELESFLGLSLSENTLLAANLPGSRILQVTE 502
Query: 467 GSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEI-GDGILTEVKH 525
V + EW + A+AN ++L GG H+ L+I + + K
Sbjct: 503 QRVLIADIECGMTIFEWTPKNQLIITAASANDDTIVLVAGGKHVTVLDIQSEARVVSEKD 562
Query: 526 AQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLG--GEIIPR 583
+ +IS + + P P+ + VG V + L DL+ I+ LG GE PR
Sbjct: 563 FGADNQISGVTL-PT--TPT--DVCIVGFPQLAKVSVLKLQDLSHISSTSLGPAGEAFPR 617
Query: 584 SVLLCAF--EGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKN-T 640
SVL+ + E L ++ DG ++ + N + L+ K+ LG++ T + N
Sbjct: 618 SVLVASVLAENAPTLFISMADGSVITYDYNDQDHSLSGMNKLVLGSEQPTFKKLPRGNGL 677
Query: 641 THVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDD 700
++VFA + P++IY S +++YS VN + S +C FNS A+P+S+A+A EL IG +D
Sbjct: 678 SNVFATCENPSLIYGSEGRIIYSAVNSEGASRICHFNSEAYPESIAVATAQELKIGLVDK 737
Query: 701 IQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEES--EMHFVRLLDDQTFEFIS 758
+ I+++P+ RR+ + + F + +++ + + E + FV L D+ F +
Sbjct: 738 ERTTQIQTLPIKATVRRVAYSPSEKAFGMGTIERKLVSGEEIVKSQFV-LADEILFRRLD 796
Query: 759 TYPLDTFEY-GCSILS-CSFSDDSNVY--YCVGTAYVLPEENEPTKGRILVFIVEDG-KL 813
+ L+ E C I + S D + VG+AY+ ++ + T G I VF V++G KL
Sbjct: 797 AFDLEGEEIVECVIRAEAPESKDGEAKDRFVVGSAYLGEDDGDSTLGYIRVFEVDNGRKL 856
Query: 814 QLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYV 873
+A++ KGA +L K++AA+ + + +++ + R G +LQ + + +
Sbjct: 857 AKVAQERVKGACRALAVMGDKIVAALVKTVVVFQVVPRSGGL-QLQRLASYRTSTAPVDI 915
Query: 874 QTRGDFIVVGDLMKSISLLIYKH-EEGA---IEERARDYNANWMSAVEILDDDIYLGAEN 929
+ I + DLMKS+ ++ Y E GA + E AR + W + V + D YL ++
Sbjct: 916 TVTRNVIAIADLMKSVCVVEYHEGENGAPDKLVEVARHFQTVWATGVTSVAPDTYLESDA 975
Query: 930 NFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFG 989
NL +R+N G +++R RLEV GE L E VNR R + + +LP + V +P
Sbjct: 976 EGNLIVLRRNRSGVEEDDRRRLEVTGEICLNEMVNRIRPVN-IQQLPSATV--VPRAFLA 1032
Query: 990 TVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNN-EKKTVDAKNFLD 1048
TV G I + A + + FL +LQ + +GG+ +R+F ++ + F+D
Sbjct: 1033 TVEGSIYLYAIINPDYQDFLMRLQATMASRADSLGGIPFTDYRAFRTMTRQATEPYRFVD 1092
Query: 1049 GDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELTRLH 1088
G+LIE FL EI + S+EE+ VE L RLH
Sbjct: 1093 GELIERFLTCEPAVQKEIVDIVGSSLEEVRAIVEALRRLH 1132
Score = 446 (162.1 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
Identities = 152/524 (29%), Positives = 251/524 (47%)
Query: 148 GQLKEAFNIRLEELQVLDIKFLYGCA-KPTIVVLYQDNKD-----ARHVKTYEVALKDKD 201
G+L E R++EL V FL+ A P + +LY+DN+ R +K A + +
Sbjct: 167 GELGEPIITRIDELFVRSSAFLHVQAGSPRLALLYEDNQKKVKLKVRELKYSTAAGAESE 226
Query: 202 FVE-GPWSQNNLDNGADLLIPVPPPLC---GVLIIGEETIVYCSA--NAFKAIPIRPS-I 254
F ++Q LD GA LIPVP PL G+LI+GE +I Y A N + P+ + I
Sbjct: 227 FTSIADYAQE-LDLGASHLIPVPAPLAAAGGLLILGETSIKYVDADNNEIVSQPLEEATI 285
Query: 255 TKAYGRVDADGSRYXXXXXXXXXXXXVITHEKEKVTGLKIELLGETSIASTISYLDNAVV 314
A+ +VD+ R+ ++ +V ++ LG TS AS + YL VV
Sbjct: 286 FVAWEQVDSQ--RWLLADDYGRLFFLMLVLRNSEVERWELHSLGNTSRASVLVYLGGGVV 343
Query: 315 YIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDL-----ERQ------G 363
++GS GDSQ+I++ Q S+ +V++ N+ P++DF ++DL E Q G
Sbjct: 344 FVGSHQGDSQVIRIGDQ-----SF-QVIQTLSNIAPVLDFTIMDLGNRTSENQMHEFSSG 397
Query: 364 QGQVVTCSGAYKDGSLRIVRNGIGINEQASV-ELQGIKGMWSLR-SSTDDPFDTFLVVSF 421
Q ++VT SGA+ DG+LR VR+G+G+ E + +++ I +W L+ S D DT L+V+F
Sbjct: 398 QARIVTGSGAFDDGTLRSVRSGVGLEELGVLGDMEHITDLWGLQVGSRGDFLDT-LLVTF 456
Query: 422 ISETRILAMNLXXXXXXXXXX-GFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELR 480
++ETR+ + G TL + ++++QVT V +
Sbjct: 457 VNETRVFRFSPDGEAEELESFLGLSLSENTLLAANLPGSRILQVTEQRVLIADIECGMTI 516
Query: 481 NEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLD-INP 539
EW + A+AN ++L GG H+ L+I +E + E + + I+
Sbjct: 517 FEWTPKNQLIITAASANDDTIVLVAGGKHVTVLDIQ----SEARVVS-EKDFGADNQISG 571
Query: 540 IGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLG--GEIIPRSVLLCAF--EGISY 595
+ + + + VG V + L DL+ I+ LG GE PRSVL+ + E
Sbjct: 572 VTLPTTPTDVCIVGFPQLAKVSVLKLQDLSHISSTSLGPAGEAFPRSVLVASVLAENAPT 631
Query: 596 LLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKN 639
L ++ DG ++ + N + L+ K+ LG++ T + N
Sbjct: 632 LFISMADGSVITYDYNDQDHSLSGMNKLVLGSEQPTFKKLPRGN 675
Score = 209 (78.6 bits), Expect = 3.8e-114, Sum P(2) = 3.8e-114
Identities = 43/141 (30%), Positives = 76/141 (53%)
Query: 5 NYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIAT 64
+Y+ H+ +++ H+ +F + ++ L++AK ++E + +TP GL + I+ R+
Sbjct: 2 SYIAPIHRASSIRHALKLHFLNAEDECLVVAKANQLEFYSVTPDGLALVTSCSIFARVTM 61
Query: 65 LE-LFRPHGEAQDFLFIATERYKFCVLQWDAESSELIT-RAMGDVSDRIGRPTDNGQIGI 122
L L P D LF+ T+RY + L WD+ +++ T R D++D R G +
Sbjct: 62 LACLPAPANSPTDHLFVGTDRYSYFTLSWDSARNQVRTERDYVDIADPSSRDARTGSRCM 121
Query: 123 IDPDCRLIGLHLYDGLFKVIP 143
IDP R + L +YDG+ VIP
Sbjct: 122 IDPSGRFMTLEIYDGMIVVIP 142
Score = 41 (19.5 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 642 HVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIG 696
HV A S R ++Y N+K + + ++E+ + + + S+A + EL +G
Sbjct: 189 HVQAGSPRLALLYEDNQKKV--KLKVRELKYSTAAGAESEFTSIADYAQ-ELDLG 240
>UNIPROTKB|B4DG00 [details] [associations]
symbol:DDB1 "cDNA FLJ52436, highly similar to DNA
damage-binding protein 1" species:9606 "Homo sapiens" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178
GO:GO:0005634 Gene3D:2.130.10.10 GO:GO:0003676 EMBL:AP003108
UniGene:Hs.290758 HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037
EMBL:AK294341 IPI:IPI00909177 SMR:B4DG00 STRING:B4DG00
Ensembl:ENST00000450997 UCSC:uc010rle.1 HOGENOM:HOG000069916
HOVERGEN:HBG102355 Uniprot:B4DG00
Length = 451
Score = 940 (336.0 bits), Expect = 7.8e-114, Sum P(2) = 7.8e-114
Identities = 193/377 (51%), Positives = 254/377 (67%)
Query: 724 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 782
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 79 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 138
Query: 783 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK 842
Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN
Sbjct: 139 YFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINST 198
Query: 843 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 902
++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG E
Sbjct: 199 VRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE 254
Query: 903 ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEF 962
E ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEF
Sbjct: 255 EIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEF 314
Query: 963 VNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIK 1021
VN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK
Sbjct: 315 VNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIK 374
Query: 1022 GVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN---------- 1071
VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+ +
Sbjct: 375 SVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKRE 434
Query: 1072 VSVEELCKRVEELTRLH 1088
+ ++L K VEELTR+H
Sbjct: 435 ATADDLIKVVEELTRIH 451
Score = 203 (76.5 bits), Expect = 7.8e-114, Sum P(2) = 7.8e-114
Identities = 38/67 (56%), Positives = 54/67 (80%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+IA
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIA 62
Query: 64 TLELFRP 70
+ELFRP
Sbjct: 63 VMELFRP 69
>UNIPROTKB|G4N4E2 [details] [associations]
symbol:MGG_16867 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178
GO:GO:0005634 Gene3D:2.130.10.10 EMBL:CM001233 GO:GO:0003676
RefSeq:XP_003712617.1 EnsemblFungi:MGG_16867T0 GeneID:12985117
KEGG:mgr:MGG_16867 Uniprot:G4N4E2
Length = 1183
Score = 471 (170.9 bits), Expect = 1.4e-79, Sum P(3) = 1.4e-79
Identities = 157/559 (28%), Positives = 252/559 (45%)
Query: 363 GQGQVVTCSGAYKDGSLRIVRNGIGINEQASV--ELQGIKGMWSLRSSTDDPFDTFLVVS 420
GQ ++VT SGA KDGSLR VR+G+G+ + + E+ G+ G++SL+S D DT LVVS
Sbjct: 417 GQARIVTASGAQKDGSLRSVRSGVGLEDIGVITDEISGVTGLFSLKSYGSDVEDT-LVVS 475
Query: 421 FISETRILAMNLXXXXXXXXXX-GFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSREL 479
F++ETR+ + G TL ++ VT L +
Sbjct: 476 FLTETRVFRFDKQGEVEELSQLQGLDISQPTLLVLGLDNGHVLYVTEEKATLFDAEGGVT 535
Query: 480 RNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQL-EYEISCLDIN 538
+ W G + A++N VLL+ G LV L IG + + + E +ISC
Sbjct: 536 ISSWSPTSGKPITHASSNGRWVLLSVDGRKLVSLNIGLDLKVSAESEERDEDQISC---- 591
Query: 539 PIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHL----GGEIIPRSVLLC----AF 590
+ +P + AVG W+ ++ I L L E L ++ R V+L A
Sbjct: 592 -VNASPHLLDVGAVGFWSSGTISIIDLKTLEATQTEKLRRNEDDAVVAREVVLARVLPAE 650
Query: 591 EGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKN-TTHVFAASDR 649
L + DG ++ F+ N G L+ RK V LGT+ R N +F +
Sbjct: 651 VANPTLFVSKDDGEVMTFVYN-DNGTLSSRKSVVLGTREARFRVLPQPNGLCSIFVTCEH 709
Query: 650 PTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEG------ELTIGTIDDIQK 703
++I+ + ++++YS V +++CPF++AAF D LA+A E EL I ID ++
Sbjct: 710 SSLIHGAERRIVYSAVTAHSAAYVCPFDTAAFRDCLAVATESAIDRRMELKISRIDRQRQ 769
Query: 704 LHIRSIPLGEHPRRICHQEQSRTFAI-CSLKNQSCAEESEMHFVRLLDDQTFEFI-STYP 761
+ + P+GE+ R I + + F + C + S E +L D+ FE + +
Sbjct: 770 CQMMTRPMGENVRSIAYSSADKVFGLGCIRRVLSRGIEKVYGTFKLFDEVIFEPKGNVFA 829
Query: 762 LDTFEYG-C---SILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQ-LI 816
L+ E C + L S+ + + + VGT Y L GR+LVF V++ + LI
Sbjct: 830 LEDGEVPECVTRAPLLDSYGEQAE-RFIVGTRY-LSGTGSGHGGRVLVFGVDESRSPYLI 887
Query: 817 AEKETKGAVYSLNAFNGKLLA-AINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQT 875
TK + + LL A+ + + L ++ + + A+ V
Sbjct: 888 HAHSTKSGCRRIATMDDDLLVIALTKTVVLVRYSETSTTSAKFLKVAAFQTSSYAVDVTV 947
Query: 876 RGDFIVVGDLMKSISLLIY 894
G I V D+MKSI+LL Y
Sbjct: 948 HGKLIAVADIMKSITLLEY 966
Score = 320 (117.7 bits), Expect = 7.9e-63, Sum P(3) = 7.9e-63
Identities = 106/390 (27%), Positives = 179/390 (45%)
Query: 226 LCGVLIIGEETIVYCSANAFK--AIPIRPSIT-KAYGRVDADGSRYXXXXXXXXXXXXVI 282
L GV+++GE ++Y ++ ++ ++ A+ + D + Y I
Sbjct: 261 LGGVIVVGESRMLYIDDQSWTWTETALKNAMVFVAWAKFD--NTHYLLADDYGGLHLLTI 318
Query: 283 THEKEKVTG---LKIELLGETSIASTISYLD-NAVVYIGSSYGDSQLIKLNLQPDA-KG- 336
++ T + +G TS A+ + Y + N +++ S YGDSQ +NL DA KG
Sbjct: 319 QVKQNSDTAVDHMSTVQIGTTSRATKLVYSETNRTLFVASHYGDSQFYDVNLFADAAKGE 378
Query: 337 SYVEVLERYVNLGPIVDFCVVDL-ERQG-----------QGQVVTCSGAYKDGSLRIVRN 384
S++E+ + N+ PI+DF V+D+ R+G Q ++VT SGA KDGSLR VR+
Sbjct: 379 SFLELRQTIENIAPILDFAVMDMGNREGDSQLGNEYSSGQARIVTASGAQKDGSLRSVRS 438
Query: 385 GIGINEQASV--ELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXX 442
G+G+ + + E+ G+ G++SL+S D DT LVVSF++ETR+ +
Sbjct: 439 GVGLEDIGVITDEISGVTGLFSLKSYGSDVEDT-LVVSFLTETRVFRFDKQGEVEELSQL 497
Query: 443 -GFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQV 501
G TL ++ VT L + + W G + A++N V
Sbjct: 498 QGLDISQPTLLVLGLDNGHVLYVTEEKATLFDAEGGVTISSWSPTSGKPITHASSNGRWV 557
Query: 502 LLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVR 561
LL+ G LV L IG + + + + + I+ + +P + AVG W+ ++
Sbjct: 558 LLSVDGRKLVSLNIGLDLKVSAESEERDED----QISCVNASPHLLDVGAVGFWSSGTIS 613
Query: 562 IFSLPDLNLITKEHL----GGEIIPRSVLL 587
I L L E L ++ R V+L
Sbjct: 614 IIDLKTLEATQTEKLRRNEDDAVVAREVVL 643
Score = 237 (88.5 bits), Expect = 1.4e-79, Sum P(3) = 1.4e-79
Identities = 55/195 (28%), Positives = 102/195 (52%)
Query: 897 EEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGE 956
++ + E RDY A W +AV L+ D ++ A+ + NL + +N+ G T E++ R+++ E
Sbjct: 993 KQAKLVEVCRDYQAMWSTAVSHLEGDSWIVADGDGNLVVLLRNTAGVTLEDKRRMQMTSE 1052
Query: 957 YHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASL-PHEQYLFLEKLQTN 1015
+ LGE VN+ + VM ++ + T G I + ++ P Q L ++ Q N
Sbjct: 1053 FGLGECVNKIQK---VMVETSANAPIVAKAFLSTTEGSIYLFGTVAPKFQSLLMD-FQAN 1108
Query: 1016 LRKVIKG-VGGLNHEQWRSFNN-EKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVS 1073
+ + +G L QWRSF N E++ + FLDG+ +E FLD+ +I + ++ +
Sbjct: 1109 MEAHVSSPLGELQFNQWRSFRNPEREGAGPERFLDGEFLEMFLDMEENTQIDICQGLSYT 1168
Query: 1074 VEELCKRVEELTRLH 1088
E++ + E+ +H
Sbjct: 1169 AEDMRNLIGEMKNMH 1183
Score = 232 (86.7 bits), Expect = 1.4e-79, Sum P(3) = 1.4e-79
Identities = 63/210 (30%), Positives = 104/210 (49%)
Query: 6 YVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQG-LQPMLDVPIYGRIAT 64
Y+ H+ ++V H+ + +E +L++AK R+EI T +G L+ ++G+I
Sbjct: 3 YIAPIHRSSSVRHALYIQLLAGEEPSLVLAKTNRLEIWRRTDEGQLKLEHSQSVFGKIVM 62
Query: 65 LELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITR-AMGDVSDRIGRPTDNGQIGII 123
L+ RP D LF+ T+R+K+ ++D ++ EL+TR A+ D+ ++ R + I+
Sbjct: 63 LQAVRPKDSETDMLFVGTDRFKYFTAEYDPDTRELVTRQAISDLGEQFVREVSSRNRCIV 122
Query: 124 DPDCRLIGLHLYDGLFKVIPFDN-KGQLKEAFNIRLE--------ELQVLDIKFLYG-CA 173
DP R + L L+ G+ V KGQ K RLE EL + D FL+ A
Sbjct: 123 DPSGRYMVLLLWSGIMHVWRLHKRKGQQKGQLQTRLELMDQARISELYIKDAVFLHSETA 182
Query: 174 KPTIVVLYQDNKDARHVK--TYEVALKDKD 201
P I LYQ + K +Y + D+D
Sbjct: 183 HPRIAFLYQPRPNEPDCKFASYRLCTDDRD 212
Score = 60 (26.2 bits), Expect = 1.3e-15, Sum P(3) = 1.3e-15
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 140 KVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLYQDNKDARHVKTYEVALKD 199
+V FD +G+++E L +LQ LDI ++PT++VL DN +V + L D
Sbjct: 481 RVFRFDKQGEVEE-----LSQLQGLDI------SQPTLLVLGLDNGHVLYVTEEKATLFD 529
Query: 200 KD 201
+
Sbjct: 530 AE 531
Score = 49 (22.3 bits), Expect = 3.5e-43, Sum P(3) = 3.5e-43
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 584 SVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQ 628
S + EG S+++ A GDG+L+ L N L D++++ + ++
Sbjct: 1009 STAVSHLEGDSWIV-ADGDGNLVVLLRNTAGVTLEDKRRMQMTSE 1052
Score = 45 (20.9 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 1033 SFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKR 1080
S + + D F D ESFL+L +T ++ I+ ++ +V ++ R
Sbjct: 358 SHYGDSQFYDVNLFADAAKGESFLELRQT-IENIAPILDFAVMDMGNR 404
Score = 41 (19.5 bits), Expect = 2.5e-33, Sum P(3) = 2.5e-33
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 219 LIPVPPPLCGV--------LIIG-EETIVYCSANAFKAIPIRPSITKAY 258
++P P LC + LI G E IVY + A A + P T A+
Sbjct: 693 VLPQPNGLCSIFVTCEHSSLIHGAERRIVYSAVTAHSAAYVCPFDTAAF 741
>UNIPROTKB|F5H6C5 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9606
"Homo sapiens" [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] GO:GO:0016055 GO:GO:0003684 EMBL:AP003108
HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI00909008
ProteinModelPortal:F5H6C5 SMR:F5H6C5 Ensembl:ENST00000535967
ArrayExpress:F5H6C5 Bgee:F5H6C5 Uniprot:F5H6C5
Length = 272
Score = 760 (272.6 bits), Expect = 2.3e-75, P = 2.3e-75
Identities = 145/274 (52%), Positives = 193/274 (70%)
Query: 342 LERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKG 401
+E + NLGPIVD CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG
Sbjct: 1 METFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKG 60
Query: 402 MWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQL 461
+W LRS + D LV+SF+ +TR+L +N GF QT FC + + QL
Sbjct: 61 LWPLRSDPNRETDDTLVLSFVGQTRVLMLN-GEEVEETELMGFVDDQQTFFCGNVAHQQL 119
Query: 462 VQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILT 521
+Q+TS SVRLVS + L +EWK P +++VA+ N+SQV++A G L YL+I L
Sbjct: 120 IQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRA-LYYLQIHPQELR 178
Query: 522 EVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEII 581
++ H ++E+E++CLDI P+G++ S + A+G+WTDIS RI LP L+ KE LGGEII
Sbjct: 179 QISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEII 238
Query: 582 PRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTG 615
PRS+L+ FE YLLCALGDG L F LN++TG
Sbjct: 239 PRSILMTTFESSHYLLCALGDGALFYFGLNIETG 272
>UNIPROTKB|F5H581 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9606
"Homo sapiens" [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] GO:GO:0016055 GO:GO:0003684 EMBL:AP003108
HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI00909251
ProteinModelPortal:F5H581 SMR:F5H581 Ensembl:ENST00000535147
ArrayExpress:F5H581 Bgee:F5H581 Uniprot:F5H581
Length = 267
Score = 686 (246.5 bits), Expect = 1.8e-69, Sum P(2) = 1.8e-69
Identities = 129/204 (63%), Positives = 161/204 (78%)
Query: 528 LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLL 587
+E+E++CLDI P+G++ S + A+G+WTDIS RI LP L+ KE LGGEIIPRS+L+
Sbjct: 1 MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILM 60
Query: 588 CAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAAS 647
FE YLLCALGDG L F LN++TG L+DRKKV+LGTQP LRTF S +TT+VFA S
Sbjct: 61 TTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACS 120
Query: 648 DRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIR 707
DRPTVIYSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR
Sbjct: 121 DRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIR 180
Query: 708 SIPLGEHPRRICHQEQSRTFAICS 731
++PL E PR+IC+QE S+ F + S
Sbjct: 181 TVPLYESPRKICYQEVSQCFGVLS 204
Score = 48 (22.0 bits), Expect = 1.8e-69, Sum P(2) = 1.8e-69
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 724 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFE 755
S+ F+ + ++ S EE E+H + ++D TFE
Sbjct: 235 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFE 267
>UNIPROTKB|F5H775 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9606
"Homo sapiens" [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] GO:GO:0016055 GO:GO:0003684 EMBL:AP003108
HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI01015574
ProteinModelPortal:F5H775 SMR:F5H775 Ensembl:ENST00000537877
ArrayExpress:F5H775 Bgee:F5H775 Uniprot:F5H775
Length = 240
Score = 661 (237.7 bits), Expect = 3.4e-64, P = 3.4e-64
Identities = 128/228 (56%), Positives = 166/228 (72%)
Query: 443 GFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVL 502
GF QT FC + + QL+Q+TS SVRLVS + L +EWK P +++VA+ N+SQV+
Sbjct: 14 GFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVV 73
Query: 503 LATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRI 562
+A G L YL+I L ++ H ++E+E++CLDI P+G++ S + A+G+WTDIS RI
Sbjct: 74 VAVGRA-LYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARI 132
Query: 563 FSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKK 622
LP L+ KE LGGEIIPRS+L+ FE YLLCALGDG L F LN++TG L+DRKK
Sbjct: 133 LKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKK 192
Query: 623 VSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEV 670
V+LGTQP LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV
Sbjct: 193 VTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEV 240
>UNIPROTKB|F5H0Y5 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 GO:GO:0016055
Gene3D:2.130.10.10 GO:GO:0003684 EMBL:AP003108 HGNC:HGNC:2717
ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI00909177
ProteinModelPortal:F5H0Y5 SMR:F5H0Y5 Ensembl:ENST00000539332
ArrayExpress:F5H0Y5 Bgee:F5H0Y5 Uniprot:F5H0Y5
Length = 204
Score = 626 (225.4 bits), Expect = 2.2e-60, P = 2.2e-60
Identities = 125/207 (60%), Positives = 157/207 (75%)
Query: 791 VLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWML 850
V PEE EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN ++LY+W
Sbjct: 2 VYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTT 61
Query: 851 RDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNA 910
+EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG EE ARD+N
Sbjct: 62 E----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNP 117
Query: 911 NWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGS 970
NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEFVN F HGS
Sbjct: 118 NWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGS 177
Query: 971 LVMR-LPDSDVGQIPTVIFGTVNGVIG 996
LVM+ L ++ +V+FGTVNG+IG
Sbjct: 178 LVMQNLGETSTPTQGSVLFGTVNGMIG 204
>TAIR|locus:2100616 [details] [associations]
symbol:SAP130a "spliceosome-associated protein 130 a"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA;ISS] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] [GO:0009555 "pollen
development" evidence=IMP] [GO:0009846 "pollen germination"
evidence=IMP] [GO:0048481 "ovule development" evidence=IMP]
InterPro:IPR001680 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 SMART:SM00320 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 EMBL:CP002686 Gene3D:2.130.10.10 GO:GO:0009555
GO:GO:0003676 EMBL:AL132954 GO:GO:0048481 GO:GO:0009846
eggNOG:NOG247734 KO:K12830 HOGENOM:HOG000216677 OMA:FDTIPVA
IPI:IPI00517026 PIR:T47659 RefSeq:NP_567015.1 RefSeq:NP_567016.1
UniGene:At.28226 UniGene:At.72270 ProteinModelPortal:Q9LD60
SMR:Q9LD60 STRING:Q9LD60 PaxDb:Q9LD60 PRIDE:Q9LD60
EnsemblPlants:AT3G55200.1 EnsemblPlants:AT3G55220.1 GeneID:824686
GeneID:824688 KEGG:ath:AT3G55200 KEGG:ath:AT3G55220
KEGG:dosa:Os02t0137400-01 TAIR:At3g55200 TAIR:At3g55220
InParanoid:Q9LD60 PhylomeDB:Q9LD60 ProtClustDB:CLSN2689171
ArrayExpress:Q9LD60 Genevestigator:Q9LD60 Uniprot:Q9LD60
Length = 1214
Score = 345 (126.5 bits), Expect = 2.6e-58, Sum P(4) = 2.6e-58
Identities = 116/431 (26%), Positives = 202/431 (46%)
Query: 331 QPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINE 390
QP + V + ++ +L P++D V+++ + Q+ + G SLRI+R G+ I E
Sbjct: 386 QPRRLKNLVRI-DQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITE 444
Query: 391 QASVELQGI-KGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQ 449
A +L G +W+++ + D FD ++VVSF + T L +++ GF T
Sbjct: 445 MAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNAT--LVLSIGEQVEEVNDSGFLDTTP 502
Query: 450 TLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGH 509
+L + L+QV +R + R NEW++P S+ N QV++A GG
Sbjct: 503 SLAVSLIGDDSLMQVHPNGIRHIREDGRI--NEWRTPGKRSIVKVGYNRLQVVIALSGGE 560
Query: 510 LVYLEIG-DGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL-PD 567
L+Y E G L EV+ ++ +++CLDI P+ E S+ AVG + D +VRI SL PD
Sbjct: 561 LIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSRFLAVGSY-DNTVRILSLDPD 619
Query: 568 --LNLITKEHLGGEIIPRSVLLCAFE-------GIS-----YLLCALGDGHLLNFLLNMK 613
L +++ + + P S+L + G +L L +G L +++M
Sbjct: 620 DCLQILSVQSVSSA--PESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMV 677
Query: 614 TGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHM 673
TG+L+D + LG +P L + S + + + S RP + Y + ++ + +
Sbjct: 678 TGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFA 737
Query: 674 CPFNSAAFPDSLAIAKEGELTIGTIDDI-QKLHIRSIPLGEHPRR-ICHQEQSRTFAICS 731
PF+S + + L I ID + + + +PL PR+ + H ++ I S
Sbjct: 738 APFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIES 797
Query: 732 LKNQSCAEESE 742
+ AEE E
Sbjct: 798 DQGAFTAEERE 808
Score = 241 (89.9 bits), Expect = 2.6e-58, Sum P(4) = 2.6e-58
Identities = 100/369 (27%), Positives = 172/369 (46%)
Query: 740 ESE--MHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSD-DSNVYYCVGTAYVL---P 793
ESE + +R+LD +T L E S+ + +F D + VGT + P
Sbjct: 855 ESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWP 914
Query: 794 EENEPTKGRILVF-IVEDGK-LQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLR 851
++N G I ++ VEDGK L+L+ + + +G +L F G+LLA I ++LY
Sbjct: 915 KKNL-VAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLY----- 968
Query: 852 DDGTRELQSECGHHGHILALY-VQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNA 910
D G + L +C + + +QT D I VGD+ +S Y+ +E + A D
Sbjct: 969 DLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVP 1028
Query: 911 NWMSAVEILDDDIYLGAENNFNLFTVRK----NSEGATDEERGRLE-----VVGEYHLGE 961
W++A +D D GA+ N++ VR + E D G+++ + G + +
Sbjct: 1029 RWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVD 1088
Query: 962 FVNRFRHGSLVMRLPDSDV--GQIPTVIFGTVNGVIGVI-ASLPHEQYLFLEKLQTNLRK 1018
+ +F G +V L + + G ++++GTV G IG + A + F L+ ++R+
Sbjct: 1089 EIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQ 1148
Query: 1019 VIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESF----LDLSRTRMDEISKTMNVSV 1074
+ G +H +RS K+ +DGDL E F +DL R DE+ +T
Sbjct: 1149 EYPPLCGRDHMAYRS-----AYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTP---- 1199
Query: 1075 EELCKRVEE 1083
E+ K++E+
Sbjct: 1200 AEILKKLED 1208
Score = 104 (41.7 bits), Expect = 2.6e-58, Sum P(4) = 2.6e-58
Identities = 42/181 (23%), Positives = 75/181 (41%)
Query: 188 RHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPL---CGVLIIGEETIVYCSA-- 242
+H+ YE+ L + V WS N +DNGA++L+ VP GVL+ E ++Y +
Sbjct: 205 KHLTFYELDL-GLNHVSRKWS-NPVDNGANMLVTVPGGADGPSGVLVCAENFVIYMNQGH 262
Query: 243 -NAFKAIPIRPSITKAYG------RVDADGSRYXXXXXXXXXXXXVIT--HEKEKVTGLK 293
+ IP R + G V + + +T H + V+ LK
Sbjct: 263 PDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQTEYGDVFKVTLDHNGDHVSELK 322
Query: 294 IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNL---QPDAKGSYVEVLERYVNLGP 350
++ +AS+I L ++ S +G+ L + +PD + S ++E P
Sbjct: 323 VKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAIGEEPDVESSSSNLMETEEGFQP 382
Query: 351 I 351
+
Sbjct: 383 V 383
Score = 102 (41.0 bits), Expect = 2.6e-58, Sum P(4) = 2.6e-58
Identities = 53/238 (22%), Positives = 101/238 (42%)
Query: 6 YVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQ--G-LQPMLDVPIYGRI 62
Y +T + T + + GNF+ + + +A+ +I + LL P G +Q + V ++G I
Sbjct: 4 YSLTLQQATGIVCAINGNFSGGKTQEIAVAR-GKI-LDLLRPDENGKIQTIHSVEVFGAI 61
Query: 63 ATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIG-RPTDNGQIG 121
+L FR G +D++ + ++ + +L+++ E + + + + + G R GQ
Sbjct: 62 RSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKN-VFDKVHQETFGKSGCRRIVPGQYV 120
Query: 122 IIDPDCR--LIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL-YGCA--KPT 176
+DP R +IG L V+ D +L + + + + C P
Sbjct: 121 AVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPI 180
Query: 177 IVVLYQDNKDARHVKTYEVAL---KDKDFVEGPWSQNNL--------DNGADLLIPVP 223
+ D +A T + A K F E N++ DNGA++L+ VP
Sbjct: 181 FAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVP 238
Score = 41 (19.5 bits), Expect = 9.3e-15, Sum P(2) = 9.3e-15
Identities = 23/79 (29%), Positives = 35/79 (44%)
Query: 526 AQLEYEISCLDINPIGENPSYSQIAAVGMWTDISV----RIFSLPDLN----LITKEHLG 577
A +E + S D +P G+ S +Q D+ + R +S P N L+T G
Sbjct: 182 AAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVP--G 239
Query: 578 GEIIPRSVLLCAFEGISYL 596
G P VL+CA + Y+
Sbjct: 240 GADGPSGVLVCAENFVIYM 258
Score = 39 (18.8 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 369 TCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSF 421
T +GA K G++ VR ++E+ + G K W P +V F
Sbjct: 1041 TMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQF 1093
>TAIR|locus:2100646 [details] [associations]
symbol:SAP130b "spliceosome-associated protein 130 b"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA;ISS] [GO:0005829 "cytosol" evidence=RCA]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0009555 "pollen
development" evidence=IMP] [GO:0009846 "pollen germination"
evidence=IMP] [GO:0048481 "ovule development" evidence=IMP]
InterPro:IPR001680 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 SMART:SM00320 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 EMBL:CP002686 Gene3D:2.130.10.10 GO:GO:0009555
GO:GO:0003676 EMBL:AL132954 GO:GO:0048481 GO:GO:0009846
eggNOG:NOG247734 KO:K12830 HOGENOM:HOG000216677 OMA:FDTIPVA
IPI:IPI00517026 PIR:T47659 RefSeq:NP_567015.1 RefSeq:NP_567016.1
UniGene:At.28226 UniGene:At.72270 ProteinModelPortal:Q9LD60
SMR:Q9LD60 STRING:Q9LD60 PaxDb:Q9LD60 PRIDE:Q9LD60
EnsemblPlants:AT3G55200.1 EnsemblPlants:AT3G55220.1 GeneID:824686
GeneID:824688 KEGG:ath:AT3G55200 KEGG:ath:AT3G55220
KEGG:dosa:Os02t0137400-01 TAIR:At3g55200 TAIR:At3g55220
InParanoid:Q9LD60 PhylomeDB:Q9LD60 ProtClustDB:CLSN2689171
ArrayExpress:Q9LD60 Genevestigator:Q9LD60 Uniprot:Q9LD60
Length = 1214
Score = 345 (126.5 bits), Expect = 2.6e-58, Sum P(4) = 2.6e-58
Identities = 116/431 (26%), Positives = 202/431 (46%)
Query: 331 QPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINE 390
QP + V + ++ +L P++D V+++ + Q+ + G SLRI+R G+ I E
Sbjct: 386 QPRRLKNLVRI-DQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITE 444
Query: 391 QASVELQGI-KGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQ 449
A +L G +W+++ + D FD ++VVSF + T L +++ GF T
Sbjct: 445 MAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNAT--LVLSIGEQVEEVNDSGFLDTTP 502
Query: 450 TLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGH 509
+L + L+QV +R + R NEW++P S+ N QV++A GG
Sbjct: 503 SLAVSLIGDDSLMQVHPNGIRHIREDGRI--NEWRTPGKRSIVKVGYNRLQVVIALSGGE 560
Query: 510 LVYLEIG-DGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL-PD 567
L+Y E G L EV+ ++ +++CLDI P+ E S+ AVG + D +VRI SL PD
Sbjct: 561 LIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSRFLAVGSY-DNTVRILSLDPD 619
Query: 568 --LNLITKEHLGGEIIPRSVLLCAFE-------GIS-----YLLCALGDGHLLNFLLNMK 613
L +++ + + P S+L + G +L L +G L +++M
Sbjct: 620 DCLQILSVQSVSSA--PESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMV 677
Query: 614 TGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHM 673
TG+L+D + LG +P L + S + + + S RP + Y + ++ + +
Sbjct: 678 TGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFA 737
Query: 674 CPFNSAAFPDSLAIAKEGELTIGTIDDI-QKLHIRSIPLGEHPRR-ICHQEQSRTFAICS 731
PF+S + + L I ID + + + +PL PR+ + H ++ I S
Sbjct: 738 APFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIES 797
Query: 732 LKNQSCAEESE 742
+ AEE E
Sbjct: 798 DQGAFTAEERE 808
Score = 241 (89.9 bits), Expect = 2.6e-58, Sum P(4) = 2.6e-58
Identities = 100/369 (27%), Positives = 172/369 (46%)
Query: 740 ESE--MHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSD-DSNVYYCVGTAYVL---P 793
ESE + +R+LD +T L E S+ + +F D + VGT + P
Sbjct: 855 ESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWP 914
Query: 794 EENEPTKGRILVF-IVEDGK-LQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLR 851
++N G I ++ VEDGK L+L+ + + +G +L F G+LLA I ++LY
Sbjct: 915 KKNL-VAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLY----- 968
Query: 852 DDGTRELQSECGHHGHILALY-VQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNA 910
D G + L +C + + +QT D I VGD+ +S Y+ +E + A D
Sbjct: 969 DLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVP 1028
Query: 911 NWMSAVEILDDDIYLGAENNFNLFTVRK----NSEGATDEERGRLE-----VVGEYHLGE 961
W++A +D D GA+ N++ VR + E D G+++ + G + +
Sbjct: 1029 RWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVD 1088
Query: 962 FVNRFRHGSLVMRLPDSDV--GQIPTVIFGTVNGVIGVI-ASLPHEQYLFLEKLQTNLRK 1018
+ +F G +V L + + G ++++GTV G IG + A + F L+ ++R+
Sbjct: 1089 EIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQ 1148
Query: 1019 VIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESF----LDLSRTRMDEISKTMNVSV 1074
+ G +H +RS K+ +DGDL E F +DL R DE+ +T
Sbjct: 1149 EYPPLCGRDHMAYRS-----AYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTP---- 1199
Query: 1075 EELCKRVEE 1083
E+ K++E+
Sbjct: 1200 AEILKKLED 1208
Score = 104 (41.7 bits), Expect = 2.6e-58, Sum P(4) = 2.6e-58
Identities = 42/181 (23%), Positives = 75/181 (41%)
Query: 188 RHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPL---CGVLIIGEETIVYCSA-- 242
+H+ YE+ L + V WS N +DNGA++L+ VP GVL+ E ++Y +
Sbjct: 205 KHLTFYELDL-GLNHVSRKWS-NPVDNGANMLVTVPGGADGPSGVLVCAENFVIYMNQGH 262
Query: 243 -NAFKAIPIRPSITKAYG------RVDADGSRYXXXXXXXXXXXXVIT--HEKEKVTGLK 293
+ IP R + G V + + +T H + V+ LK
Sbjct: 263 PDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQTEYGDVFKVTLDHNGDHVSELK 322
Query: 294 IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNL---QPDAKGSYVEVLERYVNLGP 350
++ +AS+I L ++ S +G+ L + +PD + S ++E P
Sbjct: 323 VKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAIGEEPDVESSSSNLMETEEGFQP 382
Query: 351 I 351
+
Sbjct: 383 V 383
Score = 102 (41.0 bits), Expect = 2.6e-58, Sum P(4) = 2.6e-58
Identities = 53/238 (22%), Positives = 101/238 (42%)
Query: 6 YVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQ--G-LQPMLDVPIYGRI 62
Y +T + T + + GNF+ + + +A+ +I + LL P G +Q + V ++G I
Sbjct: 4 YSLTLQQATGIVCAINGNFSGGKTQEIAVAR-GKI-LDLLRPDENGKIQTIHSVEVFGAI 61
Query: 63 ATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIG-RPTDNGQIG 121
+L FR G +D++ + ++ + +L+++ E + + + + + G R GQ
Sbjct: 62 RSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKN-VFDKVHQETFGKSGCRRIVPGQYV 120
Query: 122 IIDPDCR--LIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL-YGCA--KPT 176
+DP R +IG L V+ D +L + + + + C P
Sbjct: 121 AVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPI 180
Query: 177 IVVLYQDNKDARHVKTYEVAL---KDKDFVEGPWSQNNL--------DNGADLLIPVP 223
+ D +A T + A K F E N++ DNGA++L+ VP
Sbjct: 181 FAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVP 238
Score = 41 (19.5 bits), Expect = 9.3e-15, Sum P(2) = 9.3e-15
Identities = 23/79 (29%), Positives = 35/79 (44%)
Query: 526 AQLEYEISCLDINPIGENPSYSQIAAVGMWTDISV----RIFSLPDLN----LITKEHLG 577
A +E + S D +P G+ S +Q D+ + R +S P N L+T G
Sbjct: 182 AAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVP--G 239
Query: 578 GEIIPRSVLLCAFEGISYL 596
G P VL+CA + Y+
Sbjct: 240 GADGPSGVLVCAENFVIYM 258
Score = 39 (18.8 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 369 TCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSF 421
T +GA K G++ VR ++E+ + G K W P +V F
Sbjct: 1041 TMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQF 1093
>POMBASE|SPAC17H9.10c [details] [associations]
symbol:ddb1 "damaged DNA binding protein Ddb1"
species:4896 "Schizosaccharomyces pombe" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006279 "premeiotic DNA replication" evidence=TAS] [GO:0006282
"regulation of DNA repair" evidence=IMP] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IMP]
[GO:0006974 "response to DNA damage stimulus" evidence=IMP]
[GO:0007090 "regulation of S phase of mitotic cell cycle"
evidence=IMP] [GO:0034644 "cellular response to UV" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IGI] [GO:0042787
"protein ubiquitination involved in ubiquitin-dependent protein
catabolic process" evidence=IMP] [GO:0051445 "regulation of meiotic
cell cycle" evidence=IGI] [GO:0070912 "Ddb1-Ckn1 complex"
evidence=IDA] [GO:0070913 "Ddb1-Wdr21 complex" evidence=IDA]
[GO:0008180 "signalosome" evidence=IDA] [GO:0031465 "Cul4B-RING
ubiquitin ligase complex" evidence=IDA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143
PomBase:SPAC17H9.10c GO:GO:0005829 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR Gene3D:2.130.10.10 GO:GO:0003677
GO:GO:0007049 InterPro:IPR011047 SUPFAM:SSF50998 GO:GO:0034644
GO:GO:0040020 GO:GO:0042787 GO:GO:0007090 GO:GO:0006283
GO:GO:0006282 GO:GO:0006279 GO:GO:0070912 eggNOG:NOG247734
KO:K10610 OMA:CALGDGS PIR:T37876 RefSeq:NP_593580.1 IntAct:O13807
STRING:O13807 EnsemblFungi:SPAC17H9.10c.1 GeneID:2542207
KEGG:spo:SPAC17H9.10c OrthoDB:EOG473T0C NextBio:20803277
GO:GO:0070913 Uniprot:O13807
Length = 1072
Score = 615 (221.5 bits), Expect = 8.3e-57, P = 8.3e-57
Identities = 181/692 (26%), Positives = 351/692 (50%)
Query: 413 FDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIY--NQLVQVTSGSVR 470
+D ++ +S I ETR + ++ C ++ T+F IY +Q++Q+T+ +R
Sbjct: 418 YDNYIFLSLICETRAIIVSPEGVFSANHDLS-CEES-TIFV-STIYGNSQILQITTKEIR 474
Query: 471 LVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEY 530
L ++L + W SP S+ ++ A V +A GG +++ E GI TEV Q +
Sbjct: 475 LFDG--KKLHS-WISP--MSITCGSSFADNVCVAVAGGLILFFE---GI-TEVGRYQCDT 525
Query: 531 EISCLDINPIGENPSYSQIAAVGMWT-DISVRIFSLPDLNLITKEHLGGEIIPRSVLLCA 589
E+S L EN Y VG+W+ DI + + ++L L IPRS++
Sbjct: 526 EVSSLCFTE--ENVVY-----VGLWSADIIMLTYCQDGISLTHSLKLTD--IPRSIVYSQ 576
Query: 590 FEGIS--YLLCALGDGHLLNFLLNMKTGELTDR--KKVSLGTQPITLRTFSSKNTTHVFA 645
G L + +G++L F N + G++ + ++ LG PI L+ F SK +FA
Sbjct: 577 KYGDDGGTLYVSTNNGYVLMF--NFQNGQVIEHSLRRNQLGVAPIILKHFDSKEKNAIFA 634
Query: 646 ASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLH 705
++P ++Y + KL+ + ++ E+ ++ + + + ++ +++ + +I+ L+
Sbjct: 635 LGEKPQLMYYESDKLVITPLSCTEMLNISSYVNPSLGVNMLYCTNSYISLAKMSEIRSLN 694
Query: 706 IRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESE--MHFVRLLDDQTFEFISTYPLD 763
++++ + PRRIC F +C +S + + + F+R+ + T I+ + +
Sbjct: 695 VQTVSVKGFPRRICSNSLFY-FVLCMQLEESIGTQEQRLLSFLRVYEKNTLSEIAHHKFN 753
Query: 764 TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVF-IVEDGKLQLIAEKETK 822
+E SI+ +DD V VGT + P+++ P GR++VF + D +++ AE + +
Sbjct: 754 EYEMVESIIL--MNDDKRVV--VGTGFNFPDQDAPDSGRLMVFEMTSDNNIEMQAEHKVQ 809
Query: 823 GAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVV 882
G+V +L + ++A IN + ++++ + GT +++ + + + V D I+
Sbjct: 810 GSVNTLVLYKHLIVAGINASVCIFEY---EHGTMHVRNSIRTPTYTIDISVNQ--DEIIA 864
Query: 883 GDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEG 942
DLMKSI++L + ++ + E ARDY+ W ++VEIL + Y E + N + +++
Sbjct: 865 ADLMKSITVLQFIDDQ--LIEVARDYHPLWATSVEILSERKYFVTEADGNAVILLRDNVS 922
Query: 943 ATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLP 1002
+R +L +++LGE +N+ RH + + S V P ++ TV+G + ++
Sbjct: 923 PQLSDRKKLRWYKKFYLGELINKTRHCTFIEPQDKSLV--TPQLLCATVDGSLMIVGDAG 980
Query: 1003 HEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTR 1062
L +LQ N+RKVI GGL+H++W+ + E +T + +DG LIES L L
Sbjct: 981 MSNTPLLLQLQDNIRKVIPSFGGLSHKEWKEYRGENET-SPSDLIDGSLIESILGLREPI 1039
Query: 1063 MDEI------SKTMNVSVEELCKRVEELTRLH 1088
++EI +++SV++L +E L +LH
Sbjct: 1040 LNEIVNGGHEGTKLDISVQDLKSIIENLEKLH 1071
Score = 605 (218.0 bits), Expect = 1.1e-55, P = 1.1e-55
Identities = 165/553 (29%), Positives = 292/553 (52%)
Query: 6 YVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIATL 65
YV HKP+++ ++ F + N+I+AK +E++ L + I+ +I +
Sbjct: 3 YVTYLHKPSSIRNAVFCKFVNASSWNVIVAKVNCLEVYSYENNRLCLITSANIFAKIVNV 62
Query: 66 ELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRA-MGDVSDRIGRPTDNGQIGIID 124
+ F+P D + +AT+ +++ L WDA + + + D S+R R + +G + ++D
Sbjct: 63 KAFKPVSSPTDHIIVATDSFRYFTLFWDANDNTVSNGIKIQDCSERSLRESQSGPLLLVD 122
Query: 125 PDCRLIGLHLYDGLFKVIPF----------DNKGQLKEAFNIRLEELQVLDIKFLYGCAK 174
P R+I LH+Y GL +IP N L + F++R++EL V+DI LY ++
Sbjct: 123 PFQRVICLHVYQGLLTIIPIFKSKKRFMTSHNNPSLHDNFSVRIQELNVVDIAMLYNSSR 182
Query: 175 PTIVVLYQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGE 234
P++ VLY+D+K H+ TY++ +++++ E ++++ G LIP GV + GE
Sbjct: 183 PSLAVLYKDSKSIVHLSTYKINVREQEIDEDDVVCHDIEEGK--LIPSENG--GVFVFGE 238
Query: 235 ETIVYCSAN--AFKAI---PIR---PSITKAYGRVDADGSRYXXXXXXXXXXXXVITHEK 286
+ Y S + K + PI PSI+ D S Y
Sbjct: 239 MYVYYISKDIQVSKLLLTYPITAFSPSISND-PETGLDSSIYIVADESGMLYKFKALFTD 297
Query: 287 EKVTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPD-AKGSY-VEVLER 344
E V+ +++E LGE+SIAS + L + +++GS + +S L++L P K ++ +E+L+
Sbjct: 298 ETVS-MELEKLGESSIASCLIALPDNHLFVGSHFNNSVLLQL---PSITKNNHKLEILQN 353
Query: 345 YVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWS 404
+VN+ PI DF ++D ++ G ++TCSGAYKDG+LRI+RN I I A +E++GIK +S
Sbjct: 354 FVNIAPISDF-IIDDDQTGSS-IITCSGAYKDGTLRIIRNSINIENVALIEMEGIKDFFS 411
Query: 405 LRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIY--NQLV 462
+ + +D ++ +S I ETR + ++ C ++ T+F IY +Q++
Sbjct: 412 VSFRAN--YDNYIFLSLICETRAIIVSPEGVFSANHDLS-CEES-TIFV-STIYGNSQIL 466
Query: 463 QVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTE 522
Q+T+ +RL ++L + W SP S+ ++ A V +A GG +++ E GI TE
Sbjct: 467 QITTKEIRLFDG--KKLHS-WISP--MSITCGSSFADNVCVAVAGGLILFFE---GI-TE 517
Query: 523 VKHAQLEYEISCL 535
V Q + E+S L
Sbjct: 518 VGRYQCDTEVSSL 530
>DICTYBASE|DDB_G0282569 [details] [associations]
symbol:sf3b3 "splicing factor 3B subunit 3"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=IEA;ISS] [GO:0006461 "protein
complex assembly" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=IEA;ISS] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR017986 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 dictyBase:DDB_G0282569 GO:GO:0006461 GO:GO:0008380
Gene3D:2.130.10.10 SUPFAM:SSF50978 EMBL:AAFI02000047
GenomeReviews:CM000152_GR GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
GO:GO:0030532 eggNOG:NOG247734 KO:K12830 OMA:FDTIPVA
RefSeq:XP_640132.1 STRING:Q54SA7 EnsemblProtists:DDB0233171
GeneID:8623669 KEGG:ddi:DDB_G0282569 ProtClustDB:CLSZ2729005
Uniprot:Q54SA7
Length = 1256
Score = 326 (119.8 bits), Expect = 1.2e-54, Sum P(4) = 1.2e-54
Identities = 127/493 (25%), Positives = 223/493 (45%)
Query: 623 VSLGTQPI-TLRTFSSKNTTH-VFAASDRPTVIYSSNKKL-LYSNVNLKEVSHMCPFNSA 679
V L +P+ SS+ + + A S+ +I+S +K L++ +K + P
Sbjct: 770 VPLSIEPLENASNLSSEQSAESIVATSENKIIIFSIDKLGDLFNQETIK--LNATPKRFI 827
Query: 680 AFPD-SLAIAKEGELTIGTID-DIQKLHIRSIPLGEHPRRICHQE-------QSRTFAIC 730
P S I E E T + DI K++ +S L ++ QE Q+ I
Sbjct: 828 IHPQTSYIIILETETNYNTDNIDIDKINEQSEKLLLEKQKELQQEMDIDDDDQNNNNEIE 887
Query: 731 SLKN---QSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVG 787
K + +++++D T E + + L+ E G S+ +CSF + ++ VG
Sbjct: 888 PFKKLFKPKAGKGKWKSYIKIMDPITHESLESLMLEDGEAGFSVCTCSFGESGEIFLVVG 947
Query: 788 --TAYVL-PEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQ 844
T VL P+ ++ + FI KL+L+ + E + VY++ F GKL+ + + I+
Sbjct: 948 CVTDMVLNPKSHKSAHLNLYRFIDGGKKLELLYKTEVEEPVYAMAQFQGKLVCGVGKSIR 1007
Query: 845 LYKWMLRDDGTRELQSECGHHGHILALY-VQTRGDFIVVGDLMKSISLLIYKHEEGAIEE 903
+Y D G ++L +C + + + GD +VVGD+ +SI + YK E +
Sbjct: 1008 IY-----DMGKKKLLRKCETKNLPNTIVNIHSLGDRLVVGDIQESIHFIKYKRSENMLYV 1062
Query: 904 RARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKN---SEGATDEERG---RLE---VV 954
A D WM++ +LD D GA+ N+F +R S+ ++ G + E +
Sbjct: 1063 FADDLAPRWMTSSVMLDYDTVAGADKFGNIFVLRLPLLISDEVEEDPTGTKLKFESGTLN 1122
Query: 955 GEYHLGEFVNRFRHGSLVMRLPDSD--VGQIPTVIFGTVNGVIG-VIASLPHEQYLFLEK 1011
G H + + F G V L + VG +++ T++G IG +I E F
Sbjct: 1123 GAPHKLDHIANFFVGDTVTTLNKTSLVVGGPEVILYTTISGAIGALIPFTSREDVDFFST 1182
Query: 1012 LQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN 1071
L+ N+R + G +H +RS+ KN +DGDL E F L+ + IS+ ++
Sbjct: 1183 LEMNMRSDCLPLCGRDHLAYRSYY-----FPVKNIIDGDLCEQFSTLNYQKQLSISEELS 1237
Query: 1072 VSVEELCKRVEEL 1084
S E+ K++EE+
Sbjct: 1238 RSPSEVIKKLEEI 1250
Score = 270 (100.1 bits), Expect = 1.2e-54, Sum P(4) = 1.2e-54
Identities = 67/226 (29%), Positives = 118/226 (52%)
Query: 347 NLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI-KGMWSL 405
+L PI+DF V+DL R+ Q+ + G + SL+++R+G+ + + L G+ G+W++
Sbjct: 416 SLSPIIDFKVLDLVREENPQLYSLCGTGLNSSLKVLRHGLSVTTITTANLPGVPSGIWTV 475
Query: 406 RSSTD----DPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQL 461
ST D D ++VVSF+ T +L++ G T TL + +
Sbjct: 476 PKSTSPNAIDQTDKYIVVSFVGTTSVLSVG--DTIQENHESGILETTTTLLVKSMGDDAI 533
Query: 462 VQVTSGSVRLVSSTSRELR-NEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGI- 519
+QV R + S +LR NEW++P ++ A+AN SQ+ +A GG ++Y E+
Sbjct: 534 IQVFPTGFRHIKS---DLRINEWRAPGRKTIVRASANQSQLAIALSGGEIIYFELDQASN 590
Query: 520 LTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL 565
L E+ L +I+C++I+PI + + ++ AV W +R+ SL
Sbjct: 591 LIEIIKKDLRRDIACIEISPIPKGRNMARFIAVSDWEG-PIRVLSL 635
Score = 104 (41.7 bits), Expect = 1.2e-54, Sum P(4) = 1.2e-54
Identities = 31/149 (20%), Positives = 72/149 (48%)
Query: 6 YVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQG-LQPMLDVPIYGRIAT 64
Y +T +PT+V S GNF+ +++ +++ +E+ G +Q +L ++G + +
Sbjct: 4 YNLTLQRPTSVYQSISGNFSGTKQVEIVLNHGRSLELIRYDENGKMQSVLYTEVFGIVRS 63
Query: 65 LELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIG-RPTDNGQIGII 123
+ FR +D++ + ++ + +L+++++ ++ + + R G R GQ +
Sbjct: 64 IIPFRLTSGTKDYIIVGSDSGRVVILEYNSQKNQF-DKIHQETFGRSGCRRIVPGQYLAV 122
Query: 124 DPDCR--LIGLHLYDGLFKVIPFDNKGQL 150
DP R +IG L ++ D+ L
Sbjct: 123 DPKGRAFMIGAIEKQKLVYILNRDSSANL 151
Score = 104 (41.7 bits), Expect = 2.2e-31, Sum P(4) = 2.2e-31
Identities = 34/135 (25%), Positives = 64/135 (47%)
Query: 592 GISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPT 651
G +L L +G + L+ TGEL+D + LG +P+ L + + + A S R
Sbjct: 699 GSLFLFVGLKNGVVKRATLDSVTGELSDIRTRLLGRKPVKLFKVKVRGSNAMLALSSRVW 758
Query: 652 VIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKL-HIRSIP 710
+ Y + KL ++++ + + +S +S+ E ++ I +ID + L + +I
Sbjct: 759 LNYINQGKLDIVPLSIEPLENASNLSSEQSAESIVATSENKIIIFSIDKLGDLFNQETIK 818
Query: 711 LGEHPRR-ICHQEQS 724
L P+R I H + S
Sbjct: 819 LNATPKRFIIHPQTS 833
Score = 59 (25.8 bits), Expect = 1.2e-54, Sum P(4) = 1.2e-54
Identities = 31/147 (21%), Positives = 64/147 (43%)
Query: 193 YEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPL---CGVLIIGEETIVYCS---ANAFK 246
YE+ L + V WS + +D+ A++++ VP GVL+ E+ IVY + A
Sbjct: 221 YELDLGLNNVVR-KWS-DQVDDSANIVMTVPGGTEGPGGVLVASEDYIVYRNQDHAEVRS 278
Query: 247 AIPIR----PS---ITKAYGRVDADGSRYXXXXXXXXXXXXV-ITHEKEKVTGLKIELLG 298
IP R P+ + ++ G + + + ++ ++V+ + +
Sbjct: 279 RIPRRYGSDPNKGVLIISHSSHKQKGMFFFLVQSEHGDLYKITLDYQGDQVSEVNVNYFD 338
Query: 299 ETSIASTISYLDNAVVYIGSSYGDSQL 325
+A+ ++ L N ++ S +GD L
Sbjct: 339 TIVLANCLTVLKNGFLFAASEFGDHTL 365
Score = 57 (25.1 bits), Expect = 1.2e-32, Sum P(4) = 1.2e-32
Identities = 36/175 (20%), Positives = 75/175 (42%)
Query: 468 SVRLVSSTSRELRNEWK---SPPGYSVNVATANASQVLLATGGGHL-VYLEIGDGILTEV 523
S+ ++ E+ E K S G + T+ +S T GG L +++ + +G++
Sbjct: 656 SLSIIEMQLNEMGIETKKSQSQTGQTTTTTTSTSSASSSVTSGGSLFLFVGLKNGVVKRA 715
Query: 524 KHAQLEYEISCLDINPIGENP-SYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIP 582
+ E+S + +G P ++ G ++ + + S LN I + L +I+P
Sbjct: 716 TLDSVTGELSDIRTRLLGRKPVKLFKVKVRG--SNAMLALSSRVWLNYINQGKL--DIVP 771
Query: 583 RSVLLCAFEGISYL--------LCALGDGHLLNFLLNMKTGELTDRKKVSLGTQP 629
S+ E S L + A + ++ F ++ K G+L +++ + L P
Sbjct: 772 LSIE--PLENASNLSSEQSAESIVATSENKIIIFSID-KLGDLFNQETIKLNATP 823
>ASPGD|ASPL0000031473 [details] [associations]
symbol:AN5452 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 GO:GO:0008380
Gene3D:2.130.10.10 GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
GO:GO:0007049 EMBL:BN001305 EMBL:AACD01000094 eggNOG:NOG247734
KO:K12830 RefSeq:XP_663056.1 STRING:Q5B1X8 GeneID:2871744
KEGG:ani:AN5452.2 HOGENOM:HOG000216677 OMA:FDTIPVA
OrthoDB:EOG4FR40R Uniprot:Q5B1X8
Length = 1209
Score = 343 (125.8 bits), Expect = 2.0e-53, Sum P(5) = 2.0e-53
Identities = 117/443 (26%), Positives = 193/443 (43%)
Query: 339 VEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQG 398
+ ++E +L P+VD VV++ Q+ T SG + R +++G+ ++E EL
Sbjct: 411 LNLVEAINSLNPLVDSKVVNISEDDAPQIFTVSGTGARSTFRTLKHGLEVSEIVESELPS 470
Query: 399 I-KGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAI 457
+ +W+ + + D FD ++V+SF + T L +++ GF S TL
Sbjct: 471 VPSAVWTTKLTRADEFDAYIVLSFANGT--LVLSIGETVEEVTDTGFLSSAPTLAVQQLG 528
Query: 458 YNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEI-G 516
+ L+Q+ +R + + R NEW +P S+ A N QV +A G +VY E+
Sbjct: 529 EDSLIQIHPRGIRHILADRRV--NEWPAPQHRSIVAAATNERQVAVALSSGEIVYFELDA 586
Query: 517 DGILTEV-KHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL-PDLNLITKE 574
DG L E + Q+ ++CL + + E S AVG D +VRI SL PD L K
Sbjct: 587 DGSLAEYDERRQMSGTVTCLSLGEVPEGRVRSSFLAVGC-DDSTVRILSLDPDTTLENKS 645
Query: 575 HLGGEIIPRSVLLCAFEGIS------YLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQ 628
P ++ + A S YL L G L L+ TGEL+D + LG++
Sbjct: 646 VQALTAAPSALNIIAMADSSSGGTTLYLHIGLHSGVYLRTALDEVTGELSDTRTRFLGSK 705
Query: 629 PITLRTFSSKNTTHVFAASDRPTVIYSSN--KKLLYSNVNLKEVSHMCPFNSAAFPDSLA 686
+ L S T V A S RP + YS K + + ++ + F+S + +
Sbjct: 706 AVKLFQVSVTGQTAVLALSSRPWLGYSDTQTKGFMLTPLDYVGLEWGWNFSSEQCVEGMV 765
Query: 687 IAKEGELTIGTIDDIQKLHIR-SIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHF 745
+ L I +I+ + ++ SIPL PR + F + N + +
Sbjct: 766 GIQGQNLRIFSIEKLDNNMLQQSIPLAYTPRHFIKHPEEPLFYVIEADNNVLSPATR--- 822
Query: 746 VRLLDDQTFEFISTYPLDTFEYG 768
RLL+D T L ++G
Sbjct: 823 ARLLEDSKARGGDTTVLPPEDFG 845
Score = 227 (85.0 bits), Expect = 2.0e-53, Sum P(5) = 2.0e-53
Identities = 91/351 (25%), Positives = 159/351 (45%)
Query: 757 ISTYPLDTFEYGCSILSCSF-SDDSNVYYCVGTAYVLPEENEPTK--GRILVF-IVEDGK 812
+ L+ E SI + F S D + VGTA + N P+ G I ++ EDGK
Sbjct: 869 VGAVELEENEAAVSIAAVPFTSQDDETFLVVGTAKDMTV-NPPSSAGGYIHIYRFQEDGK 927
Query: 813 -LQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILAL 871
L+ I + + + +L F G+LLA + +++Y D G ++L +C A+
Sbjct: 928 ELEFIHKTKVEEPPLALLGFQGRLLAGVGSVLRIY-----DLGMKQLLRKCQAAVAPKAI 982
Query: 872 Y-VQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENN 930
+QT+G IVV D+ +S++ ++YK+++ + D A W +A ++D + G +
Sbjct: 983 VGLQTQGSRIVVSDVRESVTYVVYKYQDNVLIPFVDDSIARWTTAATMVDYETTAGGDKF 1042
Query: 931 FNLFTVR---KNSEGATDEERGRLEVVGEYHLGEFVNRFR---HGSLVMRLPDS------ 978
NL+ VR K SE A +E G + +L NR H +P S
Sbjct: 1043 GNLWLVRCPKKASEEADEEGSGAHLIHDRGYLQGTPNRLELMIH-VFTQDIPTSLHKTQL 1101
Query: 979 DVGQIPTVIFGTVNGVIGVIAS-LPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNE 1037
G +++ G IG++ + E F + L+ L + G +H +RS+
Sbjct: 1102 VAGGRDILVWTGFQGTIGILVPFVSREDVDFFQSLEMQLASQCPPLAGRDHLIYRSYY-- 1159
Query: 1038 KKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL-TRL 1087
K +DGDL E + LS I+ ++ SV E+ +++ ++ TR+
Sbjct: 1160 ---APVKGVIDGDLCEQYFLLSNDTKMMIAAELDRSVREIERKISDMRTRV 1207
Score = 120 (47.3 bits), Expect = 2.0e-53, Sum P(5) = 2.0e-53
Identities = 33/126 (26%), Positives = 60/126 (47%)
Query: 6 YVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTP-QG-LQPMLDVPIYGRIA 63
Y +T PT +T + +G F +E ++ A +++ IH P QG + P+ ++G I
Sbjct: 10 YSLTIQPPTAITQAILGQFAGTKEQQIVTASGSKLTIHRPDPTQGKVIPLYTQDVFGIIR 69
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIG-RPTDNGQIGI 122
TL FR G +D++ I ++ + ++++ S R + + G R GQ
Sbjct: 70 TLAAFRLAGSNKDYIIIGSDSGRITIIEY-VPSQNRFNRIHLETFGKSGVRRVVPGQYLA 128
Query: 123 IDPDCR 128
+DP R
Sbjct: 129 VDPKGR 134
Score = 50 (22.7 bits), Expect = 2.0e-53, Sum P(5) = 2.0e-53
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 193 YEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPL---CGVLIIGEETIVYCSAN--AFKA 247
YE+ L + V W+ + +D + +L VP GVL+ E+ I Y +N AF+
Sbjct: 217 YELDL-GLNHVVRKWT-DPVDRTSSMLFQVPGGADGPSGVLVCAEDNITYRHSNQDAFR- 273
Query: 248 IPI 250
+PI
Sbjct: 274 VPI 276
Score = 49 (22.3 bits), Expect = 2.0e-53, Sum P(5) = 2.0e-53
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 288 KVTGLKIELLGETSIASTISYLDNAVVYIGSSYGD 322
+V GLKI+ +AS++ L + +Y+ + G+
Sbjct: 333 EVKGLKIKYFDTVPLASSLLILKSGFLYVAAEGGN 367
Score = 43 (20.2 bits), Expect = 7.5e-21, Sum P(3) = 7.5e-21
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 577 GGEIIPRSVLLCAFEGISY 595
GG P VL+CA + I+Y
Sbjct: 246 GGADGPSGVLVCAEDNITY 264
>UNIPROTKB|E2RR33 [details] [associations]
symbol:SF3B3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00530000063396 GO:GO:0005689 KO:K12830 OMA:FDTIPVA
CTD:23450 EMBL:AAEX03004077 RefSeq:XP_536791.2
Ensembl:ENSCAFT00000032086 GeneID:479659 KEGG:cfa:479659
Uniprot:E2RR33
Length = 1217
Score = 337 (123.7 bits), Expect = 1.1e-50, Sum P(4) = 1.1e-50
Identities = 112/408 (27%), Positives = 188/408 (46%)
Query: 347 NLGPIVDFC-VVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI-KGMWS 404
+L PI+ FC + DL + Q+ G SLR++R+G+ ++E A EL G +W+
Sbjct: 403 SLSPIL-FCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWT 461
Query: 405 LRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQV 464
+R +D FD +++VSF++ T L +++ GF T TL C + LVQV
Sbjct: 462 VRRHIEDEFDAYIIVSFVNAT--LVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQV 519
Query: 465 TSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIG-DGILTE- 522
+R + + R NEWK+P ++ N QV++A GG LVY E+ G L E
Sbjct: 520 YPDGIRHIRADKRV--NEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEY 577
Query: 523 VKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL-PD--LNLITKEHLGGE 579
+ ++ ++ C+ + + S+ AVG+ D +VRI SL P L ++ + L +
Sbjct: 578 TERKEMSADVVCMSLANVPPGEQRSRFLAVGL-VDNTVRIISLDPSDCLQPLSMQALPAQ 636
Query: 580 IIPRSVLLCAFE----------------GISYLLCALGDGHLLNFLLNMKTGELTDRKKV 623
P S LC E G YL L +G LL +L+ TG+L+D +
Sbjct: 637 --PES--LCIVEMGGTEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTR 692
Query: 624 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 683
LG++P+ L + V A S R + YS + + ++ + + F S P+
Sbjct: 693 YLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPE 752
Query: 684 SLAIAKEGELTIGTIDDIQKLHIR-SIPLGEHPRR-ICHQEQSRTFAI 729
+ L I ++ + + + + PL PR+ + H E + I
Sbjct: 753 GIVAISTNTLRILALEKLGAVFNQVAFPLQYTPRKFVIHPESNNLIII 800
Score = 242 (90.2 bits), Expect = 1.1e-50, Sum P(4) = 1.1e-50
Identities = 87/363 (23%), Positives = 169/363 (46%)
Query: 746 VRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYC-VGTAY-VLPEENEPTKGRI 803
+R+++ + L+ E S+ C FS+ + +Y VG A ++ G +
Sbjct: 866 IRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTGDDWYVLVGVAKDLILNPRSVAGGFV 925
Query: 804 LVF-IVEDG-KLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSE 861
+ +V +G KL+ + + + ++ F G++L + + +++Y D G ++L +
Sbjct: 926 YTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVY-----DLGKKKLLRK 980
Query: 862 CGHHGHILALYV---QTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEI 918
C + HI A Y+ QT G ++V D+ +S + YK E + A D W++ +
Sbjct: 981 C-ENKHI-ANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASL 1038
Query: 919 LDDDIYLGAENNFNLFTVR--KNSEGATDEE---------RGRLEVVGEYHLGEFVNRFR 967
LD D GA+ N+ VR N+ DE+ RG L G E + +
Sbjct: 1039 LDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLN--GASQKAEVIMNYH 1096
Query: 968 HGSLVMRLPDSDV--GQIPTVIFGTVNGVIGVIASLP-HEQYLFLEKLQTNLRKVIKGVG 1024
G V+ L + + G ++++ T++G IG++ HE + F + ++ +LR +
Sbjct: 1097 VGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLC 1156
Query: 1025 GLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL 1084
G +H +RS+ KN +DGDL E F + + +S+ ++ + E+ K++E++
Sbjct: 1157 GRDHLSFRSYY-----FPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDI 1211
Query: 1085 -TR 1086
TR
Sbjct: 1212 RTR 1214
Score = 100 (40.3 bits), Expect = 1.1e-50, Sum P(4) = 1.1e-50
Identities = 27/128 (21%), Positives = 63/128 (49%)
Query: 6 YVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQ-G-LQPMLDVPIYGRIA 63
Y +T + T ++ + GNF+ ++ +++++ +E+ P G + +L V ++G I
Sbjct: 4 YNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFGVIR 63
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIG-RPTDNGQIGI 122
+L FR G +D++ + ++ + +L++ S + + + + G R GQ
Sbjct: 64 SLMAFRLTGGTKDYIVVGSDSGRIVILEYQP-SKNMFEKIHQETFGKSGCRRIVPGQFLA 122
Query: 123 IDPDCRLI 130
+DP R +
Sbjct: 123 VDPKGRAV 130
Score = 47 (21.6 bits), Expect = 4.5e-20, Sum P(4) = 4.5e-20
Identities = 34/111 (30%), Positives = 45/111 (40%)
Query: 494 ATANASQVLLATGGGHLVYLEIGDGILTE-VKHAQLEYEISCLDINPIGENPSYSQIAAV 552
A S L A LVY +G + E A LE + D +P GE + +Q
Sbjct: 150 ARLTISSPLEAHKANTLVYHVVGVDVGFENPMFACLEMDYEEADNDPTGEAAANTQQTLT 209
Query: 553 GMWTDIS----VRIFSLP---DLN-LITKEHLGGEIIPRSVLLCAFEGISY 595
D+ VR +S P N LIT GG P VL+C+ I+Y
Sbjct: 210 FYELDLGLNHVVRKYSEPLEEHGNFLITVP--GGSDGPSGVLICSENYITY 258
Score = 40 (19.1 bits), Expect = 1.1e-50, Sum P(4) = 1.1e-50
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 345 YVNLGPIVDF-CVV-----DLERQGQGQVVTCSGAYKDGSL 379
Y N G D C + DL+ +G + CS +K S+
Sbjct: 258 YKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSM 298
Score = 38 (18.4 bits), Expect = 4.5e-20, Sum P(4) = 4.5e-20
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 728 AICSLKNQSCAEESEM--HFVRLL-----DDQTFEFISTYPL---DTF 765
A+C LK SE H++ + DD+ EF S PL DTF
Sbjct: 338 AMCVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEEGDTF 385
Score = 38 (18.4 bits), Expect = 4.5e-20, Sum P(4) = 4.5e-20
Identities = 16/56 (28%), Positives = 20/56 (35%)
Query: 711 LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFE 766
L E+ R +E S SL N E+ L D T IS P D +
Sbjct: 574 LNEYTER---KEMSADVVCMSLANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQ 626
Score = 37 (18.1 bits), Expect = 4.6e-19, Sum P(4) = 4.6e-19
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 233 GEETIVYCSANAFKAIPIRPSITKAYGRVDADG 265
G++TIV C+ N + + Y +D G
Sbjct: 540 GKKTIVKCAVNQRQVVIALTGGELVYFEMDPSG 572
>UNIPROTKB|A0JN52 [details] [associations]
symbol:SF3B3 "Splicing factor 3B subunit 3" species:9913
"Bos taurus" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR004871 Pfam:PF03178 GO:GO:0008380
GO:GO:0006397 GO:GO:0003676 GO:GO:0071013 eggNOG:NOG247734
GeneTree:ENSGT00530000063396 GO:GO:0005689 KO:K12830
HOGENOM:HOG000216677 OMA:FDTIPVA EMBL:BC126518 IPI:IPI00690059
RefSeq:NP_001071319.1 UniGene:Bt.7895 ProteinModelPortal:A0JN52
STRING:A0JN52 PRIDE:A0JN52 Ensembl:ENSBTAT00000014050 GeneID:504962
KEGG:bta:504962 CTD:23450 HOVERGEN:HBG093942 InParanoid:A0JN52
OrthoDB:EOG4RV2QJ BioCyc:CATTLE:504962-MONOMER BindingDB:A0JN52
NextBio:20866909 ArrayExpress:A0JN52 Uniprot:A0JN52
Length = 1217
Score = 337 (123.7 bits), Expect = 1.4e-50, Sum P(4) = 1.4e-50
Identities = 112/408 (27%), Positives = 188/408 (46%)
Query: 347 NLGPIVDFC-VVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI-KGMWS 404
+L PI+ FC + DL + Q+ G SLR++R+G+ ++E A EL G +W+
Sbjct: 403 SLSPIL-FCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWT 461
Query: 405 LRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQV 464
+R +D FD +++VSF++ T L +++ GF T TL C + LVQV
Sbjct: 462 VRRHIEDEFDAYIIVSFVNAT--LVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQV 519
Query: 465 TSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIG-DGILTE- 522
+R + + R NEWK+P ++ N QV++A GG LVY E+ G L E
Sbjct: 520 YPDGIRHIRADKRV--NEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEY 577
Query: 523 VKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL-PD--LNLITKEHLGGE 579
+ ++ ++ C+ + + S+ AVG+ D +VRI SL P L ++ + L +
Sbjct: 578 TERKEMSADVVCMSLANVPPGEQRSRFLAVGL-VDNTVRIISLDPSDCLQPLSMQALPAQ 636
Query: 580 IIPRSVLLCAFE----------------GISYLLCALGDGHLLNFLLNMKTGELTDRKKV 623
P S LC E G YL L +G LL +L+ TG+L+D +
Sbjct: 637 --PES--LCIVEMGGTEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTR 692
Query: 624 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 683
LG++P+ L + V A S R + YS + + ++ + + F S P+
Sbjct: 693 YLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPE 752
Query: 684 SLAIAKEGELTIGTIDDIQKLHIR-SIPLGEHPRR-ICHQEQSRTFAI 729
+ L I ++ + + + + PL PR+ + H E + I
Sbjct: 753 GIVAISTNTLRILALEKLGAVFNQVAFPLQYTPRKFVIHPESNNLIII 800
Score = 241 (89.9 bits), Expect = 1.4e-50, Sum P(4) = 1.4e-50
Identities = 87/363 (23%), Positives = 168/363 (46%)
Query: 746 VRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYC-VGTAY-VLPEENEPTKGRI 803
+R+++ + L+ E S+ C FS+ +Y VG A ++ G +
Sbjct: 866 IRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTGEDWYVLVGVAKDLILNPRSVAGGFV 925
Query: 804 LVF-IVEDG-KLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSE 861
+ +V +G KL+ + + + ++ F G++L + + +++Y D G ++L +
Sbjct: 926 YTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVY-----DLGKKKLLRK 980
Query: 862 CGHHGHILALYV---QTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEI 918
C + HI A Y+ QT G ++V D+ +S + YK E + A D W++ +
Sbjct: 981 C-ENKHI-ANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASL 1038
Query: 919 LDDDIYLGAENNFNLFTVR--KNSEGATDEE---------RGRLEVVGEYHLGEFVNRFR 967
LD D GA+ N+ VR N+ DE+ RG L G E + +
Sbjct: 1039 LDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLN--GASQKAEVIMNYH 1096
Query: 968 HGSLVMRLPDSDV--GQIPTVIFGTVNGVIGVIASLP-HEQYLFLEKLQTNLRKVIKGVG 1024
G V+ L + + G ++++ T++G IG++ HE + F + ++ +LR +
Sbjct: 1097 VGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLC 1156
Query: 1025 GLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL 1084
G +H +RS+ KN +DGDL E F + + +S+ ++ + E+ K++E++
Sbjct: 1157 GRDHLSFRSYY-----FPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDI 1211
Query: 1085 -TR 1086
TR
Sbjct: 1212 RTR 1214
Score = 100 (40.3 bits), Expect = 1.4e-50, Sum P(4) = 1.4e-50
Identities = 27/128 (21%), Positives = 63/128 (49%)
Query: 6 YVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQ-G-LQPMLDVPIYGRIA 63
Y +T + T ++ + GNF+ ++ +++++ +E+ P G + +L V ++G I
Sbjct: 4 YNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFGVIR 63
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIG-RPTDNGQIGI 122
+L FR G +D++ + ++ + +L++ S + + + + G R GQ
Sbjct: 64 SLMAFRLTGGTKDYIVVGSDSGRIVILEYQP-SKNMFEKIHQETFGKSGCRRIVPGQFLA 122
Query: 123 IDPDCRLI 130
+DP R +
Sbjct: 123 VDPKGRAV 130
Score = 47 (21.6 bits), Expect = 5.8e-20, Sum P(4) = 5.8e-20
Identities = 34/111 (30%), Positives = 45/111 (40%)
Query: 494 ATANASQVLLATGGGHLVYLEIGDGILTE-VKHAQLEYEISCLDINPIGENPSYSQIAAV 552
A S L A LVY +G + E A LE + D +P GE + +Q
Sbjct: 150 ARLTISSPLEAHKANTLVYHVVGVDVGFENPMFACLEMDYEEADNDPTGEAAANTQQTLT 209
Query: 553 GMWTDIS----VRIFSLP---DLN-LITKEHLGGEIIPRSVLLCAFEGISY 595
D+ VR +S P N LIT GG P VL+C+ I+Y
Sbjct: 210 FYELDLGLNHVVRKYSEPLEEHGNFLITVP--GGSDGPSGVLICSENYITY 258
Score = 40 (19.1 bits), Expect = 1.4e-50, Sum P(4) = 1.4e-50
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 345 YVNLGPIVDF-CVV-----DLERQGQGQVVTCSGAYKDGSL 379
Y N G D C + DL+ +G + CS +K S+
Sbjct: 258 YKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSM 298
Score = 38 (18.4 bits), Expect = 5.8e-20, Sum P(4) = 5.8e-20
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 728 AICSLKNQSCAEESEM--HFVRLL-----DDQTFEFISTYPL---DTF 765
A+C LK SE H++ + DD+ EF S PL DTF
Sbjct: 338 AMCVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEEGDTF 385
Score = 38 (18.4 bits), Expect = 5.8e-20, Sum P(4) = 5.8e-20
Identities = 16/56 (28%), Positives = 20/56 (35%)
Query: 711 LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFE 766
L E+ R +E S SL N E+ L D T IS P D +
Sbjct: 574 LNEYTER---KEMSADVVCMSLANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQ 626
Score = 37 (18.1 bits), Expect = 5.9e-19, Sum P(4) = 5.9e-19
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 233 GEETIVYCSANAFKAIPIRPSITKAYGRVDADG 265
G++TIV C+ N + + Y +D G
Sbjct: 540 GKKTIVKCAVNQRQVVIALTGGELVYFEMDPSG 572
>UNIPROTKB|Q15393 [details] [associations]
symbol:SF3B3 "Splicing factor 3B subunit 3" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=TAS] [GO:0005681 "spliceosomal complex" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0006461 "protein
complex assembly" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR004871 Pfam:PF03178 GO:GO:0005654 GO:GO:0006461
Reactome:REACT_1675 GO:GO:0003676 GO:GO:0000398 GO:GO:0071013
GO:GO:0030532 eggNOG:NOG247734 GO:GO:0005689 KO:K12830
HOGENOM:HOG000216677 OMA:FDTIPVA CTD:23450 HOVERGEN:HBG093942
OrthoDB:EOG4RV2QJ EMBL:AJ001443 EMBL:D87686 EMBL:D13642
EMBL:BC000463 EMBL:BC003146 EMBL:BC009780 EMBL:BC068974
EMBL:AL110251 IPI:IPI00179138 IPI:IPI00300371 IPI:IPI00828110
PIR:T14779 RefSeq:NP_036558.3 UniGene:Hs.514435
ProteinModelPortal:Q15393 DIP:DIP-28152N IntAct:Q15393
MINT:MINT-1402891 STRING:Q15393 PhosphoSite:Q15393 DMDM:116242787
PaxDb:Q15393 PeptideAtlas:Q15393 PRIDE:Q15393
Ensembl:ENST00000302516 GeneID:23450 KEGG:hsa:23450 UCSC:uc002ezf.3
GeneCards:GC16P070557 HGNC:HGNC:10770 HPA:HPA042986 MIM:605592
neXtProt:NX_Q15393 PharmGKB:PA35688 InParanoid:Q15393
PhylomeDB:Q15393 BindingDB:Q15393 ChEMBL:CHEMBL1250378
GenomeRNAi:23450 NextBio:45731 ArrayExpress:Q15393 Bgee:Q15393
CleanEx:HS_SAP130 CleanEx:HS_SF3B3 Genevestigator:Q15393
GermOnline:ENSG00000189091 Uniprot:Q15393
Length = 1217
Score = 337 (123.7 bits), Expect = 1.4e-50, Sum P(4) = 1.4e-50
Identities = 112/408 (27%), Positives = 188/408 (46%)
Query: 347 NLGPIVDFC-VVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI-KGMWS 404
+L PI+ FC + DL + Q+ G SLR++R+G+ ++E A EL G +W+
Sbjct: 403 SLSPIL-FCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWT 461
Query: 405 LRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQV 464
+R +D FD +++VSF++ T L +++ GF T TL C + LVQV
Sbjct: 462 VRRHIEDEFDAYIIVSFVNAT--LVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQV 519
Query: 465 TSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIG-DGILTE- 522
+R + + R NEWK+P ++ N QV++A GG LVY E+ G L E
Sbjct: 520 YPDGIRHIRADKRV--NEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEY 577
Query: 523 VKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL-PD--LNLITKEHLGGE 579
+ ++ ++ C+ + + S+ AVG+ D +VRI SL P L ++ + L +
Sbjct: 578 TERKEMSADVVCMSLANVPPGEQRSRFLAVGL-VDNTVRIISLDPSDCLQPLSMQALPAQ 636
Query: 580 IIPRSVLLCAFE----------------GISYLLCALGDGHLLNFLLNMKTGELTDRKKV 623
P S LC E G YL L +G LL +L+ TG+L+D +
Sbjct: 637 --PES--LCIVEMGGTEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTR 692
Query: 624 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 683
LG++P+ L + V A S R + YS + + ++ + + F S P+
Sbjct: 693 YLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPE 752
Query: 684 SLAIAKEGELTIGTIDDIQKLHIR-SIPLGEHPRR-ICHQEQSRTFAI 729
+ L I ++ + + + + PL PR+ + H E + I
Sbjct: 753 GIVAISTNTLRILALEKLGAVFNQVAFPLQYTPRKFVIHPESNNLIII 800
Score = 241 (89.9 bits), Expect = 1.4e-50, Sum P(4) = 1.4e-50
Identities = 87/363 (23%), Positives = 168/363 (46%)
Query: 746 VRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYC-VGTAY-VLPEENEPTKGRI 803
+R+++ + L+ E S+ C FS+ +Y VG A ++ G +
Sbjct: 866 IRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTGEDWYVLVGVAKDLILNPRSVAGGFV 925
Query: 804 LVF-IVEDG-KLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSE 861
+ +V +G KL+ + + + ++ F G++L + + +++Y D G ++L +
Sbjct: 926 YTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVY-----DLGKKKLLRK 980
Query: 862 CGHHGHILALYV---QTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEI 918
C + HI A Y+ QT G ++V D+ +S + YK E + A D W++ +
Sbjct: 981 C-ENKHI-ANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASL 1038
Query: 919 LDDDIYLGAENNFNLFTVR--KNSEGATDEE---------RGRLEVVGEYHLGEFVNRFR 967
LD D GA+ N+ VR N+ DE+ RG L G E + +
Sbjct: 1039 LDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLN--GASQKAEVIMNYH 1096
Query: 968 HGSLVMRLPDSDV--GQIPTVIFGTVNGVIGVIASLP-HEQYLFLEKLQTNLRKVIKGVG 1024
G V+ L + + G ++++ T++G IG++ HE + F + ++ +LR +
Sbjct: 1097 VGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLC 1156
Query: 1025 GLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL 1084
G +H +RS+ KN +DGDL E F + + +S+ ++ + E+ K++E++
Sbjct: 1157 GRDHLSFRSYY-----FPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDI 1211
Query: 1085 -TR 1086
TR
Sbjct: 1212 RTR 1214
Score = 100 (40.3 bits), Expect = 1.4e-50, Sum P(4) = 1.4e-50
Identities = 27/128 (21%), Positives = 63/128 (49%)
Query: 6 YVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQ-G-LQPMLDVPIYGRIA 63
Y +T + T ++ + GNF+ ++ +++++ +E+ P G + +L V ++G I
Sbjct: 4 YNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFGVIR 63
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIG-RPTDNGQIGI 122
+L FR G +D++ + ++ + +L++ S + + + + G R GQ
Sbjct: 64 SLMAFRLTGGTKDYIVVGSDSGRIVILEYQP-SKNMFEKIHQETFGKSGCRRIVPGQFLA 122
Query: 123 IDPDCRLI 130
+DP R +
Sbjct: 123 VDPKGRAV 130
Score = 47 (21.6 bits), Expect = 5.8e-20, Sum P(4) = 5.8e-20
Identities = 34/111 (30%), Positives = 45/111 (40%)
Query: 494 ATANASQVLLATGGGHLVYLEIGDGILTE-VKHAQLEYEISCLDINPIGENPSYSQIAAV 552
A S L A LVY +G + E A LE + D +P GE + +Q
Sbjct: 150 ARLTISSPLEAHKANTLVYHVVGVDVGFENPMFACLEMDYEEADNDPTGEAAANTQQTLT 209
Query: 553 GMWTDIS----VRIFSLP---DLN-LITKEHLGGEIIPRSVLLCAFEGISY 595
D+ VR +S P N LIT GG P VL+C+ I+Y
Sbjct: 210 FYELDLGLNHVVRKYSEPLEEHGNFLITVP--GGSDGPSGVLICSENYITY 258
Score = 40 (19.1 bits), Expect = 1.4e-50, Sum P(4) = 1.4e-50
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 345 YVNLGPIVDF-CVV-----DLERQGQGQVVTCSGAYKDGSL 379
Y N G D C + DL+ +G + CS +K S+
Sbjct: 258 YKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSM 298
Score = 38 (18.4 bits), Expect = 5.8e-20, Sum P(4) = 5.8e-20
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 728 AICSLKNQSCAEESEM--HFVRLL-----DDQTFEFISTYPL---DTF 765
A+C LK SE H++ + DD+ EF S PL DTF
Sbjct: 338 AMCVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEEGDTF 385
Score = 38 (18.4 bits), Expect = 5.8e-20, Sum P(4) = 5.8e-20
Identities = 16/56 (28%), Positives = 20/56 (35%)
Query: 711 LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFE 766
L E+ R +E S SL N E+ L D T IS P D +
Sbjct: 574 LNEYTER---KEMSADVVCMSLANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQ 626
Score = 37 (18.1 bits), Expect = 5.9e-19, Sum P(4) = 5.9e-19
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 233 GEETIVYCSANAFKAIPIRPSITKAYGRVDADG 265
G++TIV C+ N + + Y +D G
Sbjct: 540 GKKTIVKCAVNQRQVVIALTGGELVYFEMDPSG 572
>MGI|MGI:1289341 [details] [associations]
symbol:Sf3b3 "splicing factor 3b, subunit 3" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] InterPro:IPR004871 Pfam:PF03178
MGI:MGI:1289341 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0071013 eggNOG:NOG247734 GeneTree:ENSGT00530000063396
HSSP:Q16531 GO:GO:0005689 KO:K12830 HOGENOM:HOG000216677
OMA:FDTIPVA CTD:23450 HOVERGEN:HBG093942 OrthoDB:EOG4RV2QJ
EMBL:AK085705 EMBL:AK088268 EMBL:AK129035 EMBL:AK147914
EMBL:BC011412 EMBL:BC031197 EMBL:BC042580 IPI:IPI00122011
IPI:IPI00625759 RefSeq:NP_598714.1 UniGene:Mm.236123
ProteinModelPortal:Q921M3 IntAct:Q921M3 STRING:Q921M3
PhosphoSite:Q921M3 PaxDb:Q921M3 PRIDE:Q921M3
Ensembl:ENSMUST00000042012 GeneID:101943 KEGG:mmu:101943
UCSC:uc009nlc.1 InParanoid:Q921M3 NextBio:355190 Bgee:Q921M3
CleanEx:MM_SF3B3 Genevestigator:Q921M3 Uniprot:Q921M3
Length = 1217
Score = 337 (123.7 bits), Expect = 1.4e-50, Sum P(4) = 1.4e-50
Identities = 112/408 (27%), Positives = 188/408 (46%)
Query: 347 NLGPIVDFC-VVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI-KGMWS 404
+L PI+ FC + DL + Q+ G SLR++R+G+ ++E A EL G +W+
Sbjct: 403 SLSPIL-FCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWT 461
Query: 405 LRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQV 464
+R +D FD +++VSF++ T L +++ GF T TL C + LVQV
Sbjct: 462 VRRHIEDEFDAYIIVSFVNAT--LVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQV 519
Query: 465 TSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIG-DGILTE- 522
+R + + R NEWK+P ++ N QV++A GG LVY E+ G L E
Sbjct: 520 YPDGIRHIRADKRV--NEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEY 577
Query: 523 VKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL-PD--LNLITKEHLGGE 579
+ ++ ++ C+ + + S+ AVG+ D +VRI SL P L ++ + L +
Sbjct: 578 TERKEMSADVVCMSLANVPPGEQRSRFLAVGL-VDNTVRIISLDPSDCLQPLSMQALPAQ 636
Query: 580 IIPRSVLLCAFE----------------GISYLLCALGDGHLLNFLLNMKTGELTDRKKV 623
P S LC E G YL L +G LL +L+ TG+L+D +
Sbjct: 637 --PES--LCIVEMGGTEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTR 692
Query: 624 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 683
LG++P+ L + V A S R + YS + + ++ + + F S P+
Sbjct: 693 YLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPE 752
Query: 684 SLAIAKEGELTIGTIDDIQKLHIR-SIPLGEHPRR-ICHQEQSRTFAI 729
+ L I ++ + + + + PL PR+ + H E + I
Sbjct: 753 GIVAISTNTLRILALEKLGAVFNQVAFPLQYTPRKFVIHPESNNLIII 800
Score = 241 (89.9 bits), Expect = 1.4e-50, Sum P(4) = 1.4e-50
Identities = 87/363 (23%), Positives = 168/363 (46%)
Query: 746 VRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYC-VGTAY-VLPEENEPTKGRI 803
+R+++ + L+ E S+ C FS+ +Y VG A ++ G +
Sbjct: 866 IRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTGEDWYVLVGVAKDLILSPRSVAGGFV 925
Query: 804 LVF-IVEDG-KLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSE 861
+ +V +G KL+ + + + ++ F G++L + + +++Y D G ++L +
Sbjct: 926 YTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVY-----DLGKKKLLRK 980
Query: 862 CGHHGHILALYV---QTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEI 918
C + HI A Y+ QT G ++V D+ +S + YK E + A D W++ +
Sbjct: 981 C-ENKHI-ANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASL 1038
Query: 919 LDDDIYLGAENNFNLFTVR--KNSEGATDEE---------RGRLEVVGEYHLGEFVNRFR 967
LD D GA+ N+ VR N+ DE+ RG L G E + +
Sbjct: 1039 LDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLN--GASQKAEVIMNYH 1096
Query: 968 HGSLVMRLPDSDV--GQIPTVIFGTVNGVIGVIASLP-HEQYLFLEKLQTNLRKVIKGVG 1024
G V+ L + + G ++++ T++G IG++ HE + F + ++ +LR +
Sbjct: 1097 VGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLC 1156
Query: 1025 GLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL 1084
G +H +RS+ KN +DGDL E F + + +S+ ++ + E+ K++E++
Sbjct: 1157 GRDHLSFRSYY-----FPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDI 1211
Query: 1085 -TR 1086
TR
Sbjct: 1212 RTR 1214
Score = 100 (40.3 bits), Expect = 1.4e-50, Sum P(4) = 1.4e-50
Identities = 27/128 (21%), Positives = 63/128 (49%)
Query: 6 YVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQ-G-LQPMLDVPIYGRIA 63
Y +T + T ++ + GNF+ ++ +++++ +E+ P G + +L V ++G I
Sbjct: 4 YNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFGVIR 63
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIG-RPTDNGQIGI 122
+L FR G +D++ + ++ + +L++ S + + + + G R GQ
Sbjct: 64 SLMAFRLTGGTKDYIVVGSDSGRIVILEYQP-SKNMFEKIHQETFGKSGCRRIVPGQFLA 122
Query: 123 IDPDCRLI 130
+DP R +
Sbjct: 123 VDPKGRAV 130
Score = 47 (21.6 bits), Expect = 5.8e-20, Sum P(4) = 5.8e-20
Identities = 34/111 (30%), Positives = 45/111 (40%)
Query: 494 ATANASQVLLATGGGHLVYLEIGDGILTE-VKHAQLEYEISCLDINPIGENPSYSQIAAV 552
A S L A LVY +G + E A LE + D +P GE + +Q
Sbjct: 150 ARLTISSPLEAHKANTLVYHVVGVDVGFENPMFACLEMDYEEADNDPTGEAAANTQQTLT 209
Query: 553 GMWTDIS----VRIFSLP---DLN-LITKEHLGGEIIPRSVLLCAFEGISY 595
D+ VR +S P N LIT GG P VL+C+ I+Y
Sbjct: 210 FYELDLGLNHVVRKYSEPLEEHGNFLITVP--GGSDGPSGVLICSENYITY 258
Score = 40 (19.1 bits), Expect = 1.4e-50, Sum P(4) = 1.4e-50
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 345 YVNLGPIVDF-CVV-----DLERQGQGQVVTCSGAYKDGSL 379
Y N G D C + DL+ +G + CS +K S+
Sbjct: 258 YKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSM 298
Score = 38 (18.4 bits), Expect = 5.8e-20, Sum P(4) = 5.8e-20
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 728 AICSLKNQSCAEESEM--HFVRLL-----DDQTFEFISTYPL---DTF 765
A+C LK SE H++ + DD+ EF S PL DTF
Sbjct: 338 AMCVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEEGDTF 385
Score = 38 (18.4 bits), Expect = 5.8e-20, Sum P(4) = 5.8e-20
Identities = 16/56 (28%), Positives = 20/56 (35%)
Query: 711 LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFE 766
L E+ R +E S SL N E+ L D T IS P D +
Sbjct: 574 LNEYTER---KEMSADVVCMSLANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQ 626
Score = 37 (18.1 bits), Expect = 5.9e-19, Sum P(4) = 5.9e-19
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 233 GEETIVYCSANAFKAIPIRPSITKAYGRVDADG 265
G++TIV C+ N + + Y +D G
Sbjct: 540 GKKTIVKCAVNQRQVVIALTGGELVYFEMDPSG 572
>FB|FBgn0035162 [details] [associations]
symbol:CG13900 species:7227 "Drosophila melanogaster"
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS] [GO:0005686 "U2 snRNP"
evidence=ISS;IDA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0007052 GO:GO:0022008
Gene3D:2.130.10.10 GO:GO:0003676 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 GO:GO:0005686 eggNOG:NOG247734 EMBL:BT021338
ProteinModelPortal:Q5BI86 SMR:Q5BI86 STRING:Q5BI86 PaxDb:Q5BI86
PRIDE:Q5BI86 FlyBase:FBgn0035162 InParanoid:Q5BI86
OrthoDB:EOG4B5MM0 ArrayExpress:Q5BI86 Bgee:Q5BI86 Uniprot:Q5BI86
Length = 1227
Score = 282 (104.3 bits), Expect = 1.7e-50, Sum P(4) = 1.7e-50
Identities = 72/235 (30%), Positives = 116/235 (49%)
Query: 341 VLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI- 399
+++ + PI+ V DL + Q+ G +LR++R+G+ ++E A EL G
Sbjct: 397 LVDELPSFAPIITSQVADLANEDTPQLYVLCGRGPRSTLRVLRHGLEVSEMAVSELPGNP 456
Query: 400 KGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYN 459
+W+++ DD FD +++VSF++ T L +++ GF T TL C +
Sbjct: 457 NAVWTVKKRADDEFDAYIIVSFVNAT--LVLSIGETVEEVTDSGFLGTTPTLCCAALGDD 514
Query: 460 QLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGD-G 518
LVQV +R + S R NEWK+P S+ N QV++ G LVY E+ G
Sbjct: 515 ALVQVYPDGIRHIRSDKRV--NEWKAPGKKSITKCAVNQRQVVITLSGRELVYFEMDPTG 572
Query: 519 ILTE-VKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLIT 572
L E + +++ EI C+ + + E S AVG+ D +VRI SL N +T
Sbjct: 573 ELNEYTERSEMPAEIMCMALGTVPEGEQRSWFLAVGL-ADNTVRILSLDPNNCLT 626
Score = 229 (85.7 bits), Expect = 1.7e-50, Sum P(4) = 1.7e-50
Identities = 85/363 (23%), Positives = 161/363 (44%)
Query: 746 VRLLDDQTFEFISTYPLDTFE--YGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRI 803
+R LD + + + PL E ++L S + D Y VG A L ++G
Sbjct: 875 IRCLDAMHGQTMFSVPLTQNEAIMSMAMLKFSIAADGRYYLAVGIAKDLQLNPRISQGGC 934
Query: 804 L-VFIVED--GKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQS 860
+ ++ ++ L+ + + +L F G+LLA + +++Y D G +++
Sbjct: 935 IDIYKIDPTCSSLEFMHRTDIDEIPGALCGFQGRLLAGCGRMLRIY-----DFGKKKMLR 989
Query: 861 ECGH-HGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEIL 919
+C + H + +Q G + V D+ +S+ + Y+ E + A D + W++A +L
Sbjct: 990 KCENKHIPYQIVNIQAMGHRVYVSDVQESVFFIRYRRAENQLIIFADDTHPRWVTATTLL 1049
Query: 920 DDDIYLGAENNFNLFTVRKNSEGATDE------------ERGRLEVVGEYHLGEFVNRFR 967
D D A+ NL ++++ TD+ +RG L G E + F
Sbjct: 1050 DYDTIAIADKFGNL-SIQRLPHSVTDDVDEDPTGTKSLWDRGLLS--GASQKSENICSFH 1106
Query: 968 HGSLVMRLPDSDV--GQIPTVIFGTVNGVIGVIASLP-HEQYLFLEKLQTNLRKVIKGVG 1024
G ++M L + + G +I+ T++G +G E Y F + L+ ++R +
Sbjct: 1107 VGEIIMSLQKATLIPGGSEALIYATLSGTVGAFVPFTSREDYDFFQHLEMHMRNENPPLC 1166
Query: 1025 GLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL 1084
G +H +RS KN LDGDL E +L + + I+ M + ++CK++E++
Sbjct: 1167 GRDHLSYRS-----SYYPVKNVLDGDLCEQYLSIEAAKQKSIAGDMFRTPNQICKKLEDI 1221
Query: 1085 -TR 1086
TR
Sbjct: 1222 RTR 1224
Score = 113 (44.8 bits), Expect = 1.7e-50, Sum P(4) = 1.7e-50
Identities = 32/130 (24%), Positives = 63/130 (48%)
Query: 6 YVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQG----LQPMLDVPIYGR 61
Y +T K T VTH+ GNF+ ++ +++++ +E LL P + +L I+G
Sbjct: 4 YNLTLQKATGVTHAVHGNFSGGKQQEVLLSRGKSLE--LLRPDSNTGKVHTLLSTEIFGC 61
Query: 62 IATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIG-RPTDNGQI 120
+ L FR G +D++ + ++ + +L+++ S + + + + G R GQ
Sbjct: 62 VRALMAFRLTGGTKDYIVVGSDSGRIVILEYNP-SKNALEKVHQETFGKSGCRRIVPGQY 120
Query: 121 GIIDPDCRLI 130
IDP R +
Sbjct: 121 FAIDPKGRAV 130
Score = 97 (39.2 bits), Expect = 1.7e-50, Sum P(4) = 1.7e-50
Identities = 32/154 (20%), Positives = 68/154 (44%)
Query: 591 EGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRP 650
+G YL L +G LL +L+ +G+L D + LG++P+ L + + V A S R
Sbjct: 669 KGTIYLNIGLSNGVLLRTVLDPVSGDLADTRTRYLGSRPVKLFRIKMQGSEAVLAMSSRT 728
Query: 651 TVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIR-SI 709
+ Y + + ++ + + + F+S + + L I ++ + + + +
Sbjct: 729 WLSYYHQNRFHLTPLSYETLEYASGFSSEQCSEGIVAISTNTLRILALEKLGAVFNQVAF 788
Query: 710 PLGEHPRR-ICHQEQSRTFAICSLKNQSCAEESE 742
PL PR + H + R I + + E+++
Sbjct: 789 PLQYTPRTFVIHPDTGRML-IAETDHNAYTEDTK 821
Score = 58 (25.5 bits), Expect = 4.2e-21, Sum P(4) = 4.2e-21
Identities = 33/136 (24%), Positives = 60/136 (44%)
Query: 509 HLVYLEIG-DGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDIS----VRIF 563
H+V +++G D + +++YE + D++P G+ +Q D+ VR +
Sbjct: 169 HMVGVDVGFDNPMLAC--LEIDYEEA--DMDPSGDAAQRTQQTLTFYELDLGLNHVVRKY 224
Query: 564 SLP---DLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDR 620
S P N + GG P VL+C+ ++Y LGD H + + + +L D
Sbjct: 225 SEPLEEHANFLVSVP-GGNDGPSGVLICSENYLTYK--NLGDQHDIRCPIPRRRNDLDDP 281
Query: 621 KKVSLGTQPITLRTFS 636
++ + T RT S
Sbjct: 282 ERGMIFICSATHRTKS 297
Score = 39 (18.8 bits), Expect = 3.6e-25, Sum P(4) = 3.6e-25
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 345 YVNLGPIVDF-CVV-----DLERQGQGQVVTCSGAYKDGSL 379
Y NLG D C + DL+ +G + CS ++ S+
Sbjct: 258 YKNLGDQHDIRCPIPRRRNDLDDPERGMIFICSATHRTKSM 298
Score = 38 (18.4 bits), Expect = 2.1e-44, Sum P(4) = 2.1e-44
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 637 SKNTTHVFAASDRPTVIYSSNKKLLYSNVNL 667
+++TT D P +NK +Y N+ L
Sbjct: 648 TESTTQGGLDDDAPAQRSGNNKGTIYLNIGL 678
>ZFIN|ZDB-GENE-040426-2901 [details] [associations]
symbol:sf3b3 "splicing factor 3b, subunit 3"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR017986 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 ZFIN:ZDB-GENE-040426-2901 GO:GO:0008380
Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0006397 GO:GO:0005681
GO:GO:0003676 eggNOG:NOG247734 GeneTree:ENSGT00530000063396
KO:K12830 HOGENOM:HOG000216677 OMA:FDTIPVA CTD:23450
HOVERGEN:HBG093942 OrthoDB:EOG4RV2QJ EMBL:BX784024 EMBL:BC047171
IPI:IPI00508652 RefSeq:NP_998668.1 RefSeq:XP_002667683.2
UniGene:Dr.76176 STRING:Q1LVE8 PRIDE:Q1LVE8
Ensembl:ENSDART00000008310 Ensembl:ENSDART00000122831
Ensembl:ENSDART00000129666 Ensembl:ENSDART00000147743
GeneID:100334114 GeneID:406824 KEGG:dre:100334114 KEGG:dre:406824
InParanoid:Q1LVE8 NextBio:20818331 Bgee:Q1LVE8 Uniprot:Q1LVE8
Length = 1217
Score = 338 (124.0 bits), Expect = 1.8e-50, Sum P(4) = 1.8e-50
Identities = 106/411 (25%), Positives = 190/411 (46%)
Query: 341 VLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI- 399
+++ +L PI+ + DL + Q+ G +LR++R+G+ ++E A EL G
Sbjct: 397 LVDEQESLSPIMSCQIADLANEDTPQLYVACGRGPRSTLRVLRHGLEVSEMAVSELPGNP 456
Query: 400 KGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYN 459
+W++R +D FD +++VSF++ T L +++ GF T TL C +
Sbjct: 457 NAVWTVRRHVEDEFDAYIIVSFVNAT--LVLSIGETVEEVTDSGFLGTTPTLSCSLLGED 514
Query: 460 QLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIG-DG 518
LVQV +R + + R NEWK+P ++ N QV++A GG LVY E+ G
Sbjct: 515 ALVQVYPDGIRHIRADKRV--NEWKTPGKKTIIRCAVNQRQVVIALTGGELVYFEMDPSG 572
Query: 519 ILTE-VKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL-PD--LNLITKE 574
L E + ++ ++ C+ + + S+ AVG+ D +VRI SL P L ++ +
Sbjct: 573 QLNEYTERKEMSADVVCMSLANVPPGEQRSRFLAVGL-VDNTVRIISLDPSDCLQPLSMQ 631
Query: 575 HLGGEIIPRSVLLCAFEGIS--------------YLLCALGDGHLLNFLLNMKTGELTDR 620
L + P S+ + G+ YL L +G LL +L+ TG+L+D
Sbjct: 632 ALPAQ--PESLCIVEMGGVEKQDELGEKGTIGFLYLNIGLQNGVLLRTVLDPVTGDLSDT 689
Query: 621 KKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAA 680
+ LG++P+ L + V A S R + YS + + ++ + + + F S
Sbjct: 690 RTRYLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEYASGFASEQ 749
Query: 681 FPDSLAIAKEGELTIGTIDDIQKLHIR-SIPLGEHPRR-ICHQEQSRTFAI 729
P+ + L I ++ + + + + PL PR+ + H E + I
Sbjct: 750 CPEGIVAISTNTLRILALEKLGAVFNQVAFPLQYTPRKFVIHPETNNLILI 800
Score = 230 (86.0 bits), Expect = 1.8e-50, Sum P(4) = 1.8e-50
Identities = 85/361 (23%), Positives = 164/361 (45%)
Query: 746 VRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYC-VGTAY-VLPEENEPTKGRI 803
VRL++ + L+ E S+ C F + + +Y VG A ++ G I
Sbjct: 866 VRLINPIQGNTLDLVQLEQNEAAFSVAICRFLNGGDDWYVLVGVARDMILNPRSVGGGYI 925
Query: 804 LVF-IVEDG-KLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSE 861
+ IV G KL+ + + + ++ F G++L + + +++Y D G ++L +
Sbjct: 926 YTYRIVGGGDKLEFLHKTPVEDVPLAIAPFQGRVLVGVGKLLRIY-----DLGKKKLLRK 980
Query: 862 CGH-HGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILD 920
C + H L + T G ++V D+ +S+ + Y+ E + A D W++ +LD
Sbjct: 981 CENKHVPNLVTGIHTIGQRVIVSDVQESLFWVRYRRNENQLIIFADDTYPRWITTACLLD 1040
Query: 921 DDIYLGAENNFNLFTVR--KNSEGATDEE---------RGRLEVVGEYHLGEFVNRFRHG 969
D A+ N+ VR N+ DE+ RG L G E + + G
Sbjct: 1041 YDTMASADKFGNICVVRLPPNTSDDVDEDPTGNKALWDRGLLN--GASQKAEIIINYHIG 1098
Query: 970 SLVMRLPDSDV--GQIPTVIFGTVNGVIGVIASLP-HEQYLFLEKLQTNLRKVIKGVGGL 1026
V+ L + + G ++++ T++G IG++ HE + F + L+ ++R + G
Sbjct: 1099 ETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHLEMHMRSEFPPLCGR 1158
Query: 1027 NHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL-T 1085
+H +RS+ KN +DGDL E F + + +S+ ++ + E+ K++E++ T
Sbjct: 1159 DHLSFRSYY-----FPVKNVIDGDLCEQFNSMDPHKQKSVSEELDRTPPEVSKKLEDIRT 1213
Query: 1086 R 1086
R
Sbjct: 1214 R 1214
Score = 109 (43.4 bits), Expect = 1.8e-50, Sum P(4) = 1.8e-50
Identities = 41/201 (20%), Positives = 88/201 (43%)
Query: 6 YVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQG----LQPMLDVPIYGR 61
Y +T + T ++H+ GNF+ ++ +++++ +E LL P + +L + ++G
Sbjct: 4 YNITLQRATGISHAIHGNFSGTKQQEIVVSRGKILE--LLRPDANTGKVHTLLTMEVFGV 61
Query: 62 IATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIG-RPTDNGQI 120
+ +L FR G +D++ + ++ + +L++ S + + + + G R GQ
Sbjct: 62 VRSLMAFRLTGGTKDYVVVGSDSGRIVILEYHP-SKNMFEKIHQETFGKSGCRRIVPGQF 120
Query: 121 GIIDPDCR--LIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL---YGCAKP 175
+DP R +IG L ++ D +L + + + L + G P
Sbjct: 121 LAVDPKGRAVMIGATEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP 180
Query: 176 TIVVLYQDNKDARHVKTYEVA 196
L D ++A + T E A
Sbjct: 181 MFACLEMDYEEADNDPTGEAA 201
Score = 44 (20.5 bits), Expect = 5.6e-13, Sum P(3) = 5.6e-13
Identities = 33/111 (29%), Positives = 45/111 (40%)
Query: 494 ATANASQVLLATGGGHLVYLEIGDGILTE-VKHAQLEYEISCLDINPIGENPSYSQIAAV 552
A S L A LVY +G + E A LE + D +P GE + +Q
Sbjct: 150 ARLTISSPLEAHKANTLVYHVVGVDVGFENPMFACLEMDYEEADNDPTGEAAANTQQTLT 209
Query: 553 GMWTDIS----VRIFS--LPDLN--LITKEHLGGEIIPRSVLLCAFEGISY 595
D+ VR +S L + LIT GG P VL+C+ I+Y
Sbjct: 210 FYELDLGLNHVVRKYSEALEEHGNFLITVP--GGSDGPSGVLICSENYITY 258
Score = 40 (19.1 bits), Expect = 1.8e-50, Sum P(4) = 1.8e-50
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 345 YVNLGPIVDF-CVV-----DLERQGQGQVVTCSGAYKDGSL 379
Y N G D C + DL+ +G + CS +K S+
Sbjct: 258 YKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSM 298
Score = 39 (18.8 bits), Expect = 4.3e-19, Sum P(4) = 4.3e-19
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 728 AICSLKNQSCAEESEM--HFVRLL-----DDQTFEFISTYPL---DTF 765
A+C LK SE H++ + DD+ EF S PL DTF
Sbjct: 338 AMCVLKTGFLFVSSEFGNHYLYQIAHLGDDDEEPEFSSAMPLEEGDTF 385
Score = 38 (18.4 bits), Expect = 5.4e-19, Sum P(4) = 5.4e-19
Identities = 16/56 (28%), Positives = 20/56 (35%)
Query: 711 LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFE 766
L E+ R +E S SL N E+ L D T IS P D +
Sbjct: 574 LNEYTER---KEMSADVVCMSLANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQ 626
>UNIPROTKB|F5H2L3 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9606
"Homo sapiens" [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] GO:GO:0016055 GO:GO:0003684 EMBL:AP003108
HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI01011208
ProteinModelPortal:F5H2L3 SMR:F5H2L3 Ensembl:ENST00000539426
ArrayExpress:F5H2L3 Bgee:F5H2L3 Uniprot:F5H2L3
Length = 165
Score = 523 (189.2 bits), Expect = 3.0e-49, P = 3.0e-49
Identities = 97/165 (58%), Positives = 128/165 (77%)
Query: 58 IYGRIATLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPT 115
+YG+IA +ELFRP GE++D LFI T +Y C+L++ ES ++ITRA G+V DRIGRP+
Sbjct: 1 MYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPS 60
Query: 116 DNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKP 175
+ G IGIIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC P
Sbjct: 61 ETGIIGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAP 120
Query: 176 TIVVLYQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLI 220
TI +YQD + RHVKTYEV+L++K+F +GPW Q N++ A ++I
Sbjct: 121 TICFVYQDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVI 164
>UNIPROTKB|F1P529 [details] [associations]
symbol:SF3B3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00530000063396 GO:GO:0005689 OMA:FDTIPVA
EMBL:AADN02051593 EMBL:AADN02051594 IPI:IPI00576925
Ensembl:ENSGALT00000003987 ArrayExpress:F1P529 Uniprot:F1P529
Length = 1228
Score = 333 (122.3 bits), Expect = 3.1e-48, Sum P(4) = 3.1e-48
Identities = 110/407 (27%), Positives = 186/407 (45%)
Query: 347 NLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI-KGMWSL 405
+L PI+ + DL + Q+ G SLR++R+G+ ++E A EL G +W++
Sbjct: 403 SLSPILCCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTV 462
Query: 406 RSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVT 465
R +D FD +++VSF++ T L +++ GF T TL C + LVQV
Sbjct: 463 RRHVEDEFDAYIIVSFVNAT--LVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVY 520
Query: 466 SGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIG-DGILTE-V 523
+R + + R NEWK+P ++ N QV++A GG LVY E+ G L E
Sbjct: 521 PDGIRHIRADKRV--NEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYT 578
Query: 524 KHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL-PD--LNLITKEHLGGEI 580
+ ++ ++ C+ + + S+ AVG+ D +VRI SL P L ++ + L +
Sbjct: 579 ERKEMSADVVCMSLANVPPGEQRSRFLAVGL-VDNTVRIISLDPSDCLQPLSMQALPAQ- 636
Query: 581 IPRSVLLCAFE----------------GISYLLCALGDGHLLNFLLNMKTGELTDRKKVS 624
P S LC E G YL L +G LL +L+ TG+L+D +
Sbjct: 637 -PES--LCIVEMGGTEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRY 693
Query: 625 LGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDS 684
LG++P+ L + V A S R + YS + + ++ + + F S P+
Sbjct: 694 LGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEG 753
Query: 685 LAIAKEGELTIGTIDDIQKLHIR-SIPLGEHPRR-ICHQEQSRTFAI 729
+ L I ++ + + + + PL PR+ + H E + I
Sbjct: 754 IVAISTNTLRILALEKLGAVFNQVAFPLQYTPRKFVIHPESNNLIII 800
Score = 222 (83.2 bits), Expect = 3.1e-48, Sum P(4) = 3.1e-48
Identities = 74/299 (24%), Positives = 142/299 (47%)
Query: 807 IVEDG-KLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHH 865
+V G KL+ + + + ++ F G++L + + +++Y D G ++L +C +
Sbjct: 940 LVNGGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVY-----DLGKKKLLRKCENK 994
Query: 866 GHILALYV---QTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDD 922
HI A Y+ QT G ++V D+ +S + YK E + A D W++ +LD D
Sbjct: 995 KHI-ANYICGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTATLLDYD 1053
Query: 923 IYLGAENNFNLFTVR--KNSEGATDEE---------RGRLEVVGEYHLGEFVNRFRHGSL 971
GA+ N+ VR N+ DE+ RG L G E + + G
Sbjct: 1054 TVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLN--GASQKAEVIMNYHVGET 1111
Query: 972 VMRLPDSDV--GQIPTVIFGTVNGVIGVIASLP-HEQYLFLEKLQTNLRKVIKGVGGLNH 1028
V+ L + + G ++++ T++G IG++ HE + F + ++ +LR + G +H
Sbjct: 1112 VLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDH 1171
Query: 1029 EQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL-TR 1086
+RS+ KN +DGDL E F + + +++ ++ + E+ K++E++ TR
Sbjct: 1172 LSFRSYY-----FPVKNVIDGDLCEQFNSMEPNKQKNVAEELDRTPPEVSKKLEDIRTR 1225
Score = 101 (40.6 bits), Expect = 3.1e-48, Sum P(4) = 3.1e-48
Identities = 27/128 (21%), Positives = 64/128 (50%)
Query: 6 YVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQ-G-LQPMLDVPIYGRIA 63
Y +T + T ++++ GNF+ ++ +++++ +E+ P G + +L V ++G I
Sbjct: 4 YNLTLQRATGISYAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFGVIR 63
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIG-RPTDNGQIGI 122
+L FR G +D++ + ++ + +L++ S + + + + G R GQ
Sbjct: 64 SLMAFRLTGGTKDYIVVGSDSGRIVILEYQP-SKNVFEKIHQETFGKSGCRRIVPGQYLA 122
Query: 123 IDPDCRLI 130
+DP R +
Sbjct: 123 VDPKGRAV 130
Score = 47 (21.6 bits), Expect = 5.1e-18, Sum P(4) = 5.1e-18
Identities = 34/111 (30%), Positives = 45/111 (40%)
Query: 494 ATANASQVLLATGGGHLVYLEIGDGILTE-VKHAQLEYEISCLDINPIGENPSYSQIAAV 552
A S L A LVY +G + E A LE + D +P GE + +Q
Sbjct: 150 ARLTISSPLEAHKANTLVYHVVGVDVGFENPMFACLEMDYEEADNDPTGEAAANTQQTLT 209
Query: 553 GMWTDIS----VRIFSLP---DLN-LITKEHLGGEIIPRSVLLCAFEGISY 595
D+ VR +S P N LIT GG P VL+C+ I+Y
Sbjct: 210 FYELDLGLNHVVRKYSEPLEEHGNFLITVP--GGSDGPSGVLICSENYITY 258
Score = 42 (19.8 bits), Expect = 8.0e-13, Sum P(2) = 8.0e-13
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 799 TKGRILVFIVED---GKLQLIAEKETKGAVYSLNAF 831
++G+IL + D GK+ + E G + SL AF
Sbjct: 33 SRGKILELLRPDPNTGKVHTLLTVEVFGVIRSLMAF 68
Score = 40 (19.1 bits), Expect = 3.1e-48, Sum P(4) = 3.1e-48
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 345 YVNLGPIVDF-CVV-----DLERQGQGQVVTCSGAYKDGSL 379
Y N G D C + DL+ +G + CS +K S+
Sbjct: 258 YKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSM 298
Score = 38 (18.4 bits), Expect = 5.1e-18, Sum P(4) = 5.1e-18
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 728 AICSLKNQSCAEESEM--HFVRLL-----DDQTFEFISTYPL---DTF 765
A+C LK SE H++ + DD+ EF S PL DTF
Sbjct: 338 AMCVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEEGDTF 385
Score = 38 (18.4 bits), Expect = 5.1e-18, Sum P(4) = 5.1e-18
Identities = 16/56 (28%), Positives = 20/56 (35%)
Query: 711 LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFE 766
L E+ R +E S SL N E+ L D T IS P D +
Sbjct: 574 LNEYTER---KEMSADVVCMSLANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQ 626
Score = 37 (18.1 bits), Expect = 5.2e-17, Sum P(4) = 5.2e-17
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 233 GEETIVYCSANAFKAIPIRPSITKAYGRVDADG 265
G++TIV C+ N + + Y +D G
Sbjct: 540 GKKTIVKCAVNQRQVVIALTGGELVYFEMDPSG 572
>WB|WBGene00019323 [details] [associations]
symbol:teg-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0042127
"regulation of cell proliferation" evidence=IMP] [GO:0040020
"regulation of meiosis" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0016477 "cell migration"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR017986 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 eggNOG:NOG247734
GeneTree:ENSGT00530000063396 GO:GO:0001703 KO:K12830
HOGENOM:HOG000216677 OMA:FDTIPVA EMBL:FO081029 PIR:T32916
RefSeq:NP_491953.1 ProteinModelPortal:O44985 STRING:O44985
PaxDb:O44985 EnsemblMetazoa:K02F2.3 GeneID:172406
KEGG:cel:CELE_K02F2.3 UCSC:K02F2.3 CTD:172406 WormBase:K02F2.3
InParanoid:O44985 NextBio:875387 Uniprot:O44985
Length = 1220
Score = 342 (125.4 bits), Expect = 1.1e-46, Sum P(3) = 1.1e-46
Identities = 101/384 (26%), Positives = 181/384 (47%)
Query: 347 NLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI-KGMWSL 405
+L P+ D + D+ R+ Q+ + G SL+++RNG+ I+E A +L G +W++
Sbjct: 403 SLSPLTDAVIGDIAREDAAQIYSLVGRGARSSLKVLRNGLEISEMAVSDLPGNPNAVWTV 462
Query: 406 RSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVT 465
+ + +D +D+++VVSF++ T LA+ + GF T T+ C + LVQ+
Sbjct: 463 KKNIEDQYDSYIVVSFVNAT--LALTIGDTVEEASDSGFLPTTPTIGCAMIGDDSLVQIY 520
Query: 466 SGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIG-DGILTEVK 524
S +R + + R NEWK+PP + N QV +A GG LVY E+ +G L E
Sbjct: 521 SEGIRHIRADKRI--NEWKAPPRRQIVKCAVNRRQVAVALTGGELVYFELDLNGTLNEFT 578
Query: 525 HAQL-EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL-PDLNLITKEHLGGEIIP 582
+L +I+C+ + I E S+ A+G D +VRI SL P+ L+ P
Sbjct: 579 ERKLFNADIACMTFSEISEGELNSRFLALGT-VDNAVRIISLDPNDMLMPLSTQSLPCPP 637
Query: 583 RSVLLCAF-----EGIS--YLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTF 635
S+LL +G++ +L L +G L ++ TG + D + LGT+P+ L
Sbjct: 638 ESILLIDTPNEDGKGVAAVHLNIGLQNGCLFRNTVDNVTGAIMDTRTRYLGTRPVKLFKV 697
Query: 636 SSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTI 695
+ + + S R ++Y ++ + ++ + + F S + + L I
Sbjct: 698 QCQGRSAILCTSSRSWLLYHFQRRFHLTPLSYANLEYAASFCSNQCSEGIVAISASTLRI 757
Query: 696 GTIDDIQ-KLHIRSIPLGEHPRRI 718
+ + +++S PRR+
Sbjct: 758 IAAEKLGVAFNVQSFEHKMTPRRV 781
Score = 194 (73.4 bits), Expect = 1.1e-46, Sum P(3) = 1.1e-46
Identities = 71/307 (23%), Positives = 144/307 (46%)
Query: 798 PTKGRILVF-IVEDG-KLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGT 855
PT+G + F + +G + + ET V +++ F G L + +++Y D G
Sbjct: 923 PTRGCVYTFHLSANGDRFDFLHRTETPLPVGAIHDFRGMALVGFGRFLRMY-----DIGQ 977
Query: 856 RELQSECGHHGHILALY-VQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMS 914
++L ++C + +++ +Q+ G I+V D +S+ L Y+ + + A D +++
Sbjct: 978 KKLLAKCENKNFPVSIVNIQSTGQRIIVSDSQESVHFLRYRKGDNQLVVFADDTTPRYVT 1037
Query: 915 AVEILDDDIYLGAENNFNLFTVR---KNSEGATDE--------ERGRLEVVGEYHLGEFV 963
V +LD A+ NL VR + +E D+ +RG L G E V
Sbjct: 1038 CVCVLDYHTVAVADKFGNLAVVRLPERVNEDVQDDPTVSKSVWDRGWLN--GASQKVELV 1095
Query: 964 NRFRHGSLVMRLPDSDV--GQIPTVIFGTVNGVIGVIAS-LPHEQYLFLEKLQTNLRKVI 1020
+ F G + L + + G +++ T+ G IG + S + ++ F L+ ++R
Sbjct: 1096 SNFFIGDTITSLQKTSLMPGANEALVYTTIGGAIGCLVSFMSKDEVDFFTNLEMHVRSEY 1155
Query: 1021 KGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKR 1080
+ G +H +RS+ K+V +DGD+ E F + + ++++ + +V E+ K+
Sbjct: 1156 PPLCGRDHLAYRSYYAPCKSV-----IDGDICEQFSLMDTQKQKDVAEELGKTVSEISKK 1210
Query: 1081 VEEL-TR 1086
+E++ TR
Sbjct: 1211 LEDIRTR 1217
Score = 98 (39.6 bits), Expect = 1.1e-46, Sum P(3) = 1.1e-46
Identities = 45/200 (22%), Positives = 88/200 (44%)
Query: 6 YVVTAHKPTNVTHSCVGNFT-SPQELNLIIAKCTRIEIHLL-TPQG-LQPMLDVPIYGRI 62
Y +T + + + GNF+ +P+ +++ + + +E+ L T G ++ M I+G +
Sbjct: 4 YNLTLQGQSAINQAIQGNFSGTPKAQEIVVGRGSALELLTLDTVTGKIKVMCHQDIFGIV 63
Query: 63 ATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIG-RPTDNGQIG 121
+L FR +DF+ + ++ + +LQ++AE + R + + G R G
Sbjct: 64 RSLLAFRLTAGTRDFIAVGSDSGRIVILQYNAEKT-CFERLHQETFGKTGCRRIVPGHFL 122
Query: 122 IIDPDCR--LIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL---YGCAKPT 176
+ DP R +IG L ++ D++ L + + + L + G PT
Sbjct: 123 VGDPRGRALMIGAVERQKLVYIMNRDSEAHLTISSPLEAHKHHTLCYAMVGIDVGFENPT 182
Query: 177 IVVLYQDNKDARHVKTYEVA 196
L D +DA + T E A
Sbjct: 183 FACLEFDYEDADNDPTGEAA 202
Score = 37 (18.1 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 496 ANASQVLLATGGGHLVYLEI 515
A+A ++ AT G L Y E+
Sbjct: 857 ASAISLISATSGDKLSYFEL 876
>UNIPROTKB|E9PT66 [details] [associations]
symbol:Sf3b3 "Protein Sf3b3" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871 Pfam:PF03178
RGD:1311636 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00530000063396 GO:GO:0005689 IPI:IPI00958853
Ensembl:ENSRNOT00000023854 ArrayExpress:E9PT66 Uniprot:E9PT66
Length = 920
Score = 337 (123.7 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
Identities = 112/408 (27%), Positives = 188/408 (46%)
Query: 347 NLGPIVDFC-VVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI-KGMWS 404
+L PI+ FC + DL + Q+ G SLR++R+G+ ++E A EL G +W+
Sbjct: 106 SLSPIL-FCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWT 164
Query: 405 LRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQV 464
+R +D FD +++VSF++ T L +++ GF T TL C + LVQV
Sbjct: 165 VRRHIEDEFDAYIIVSFVNAT--LVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQV 222
Query: 465 TSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIG-DGILTE- 522
+R + + R NEWK+P ++ N QV++A GG LVY E+ G L E
Sbjct: 223 YPDGIRHIRADKRV--NEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEY 280
Query: 523 VKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL-PD--LNLITKEHLGGE 579
+ ++ ++ C+ + + S+ AVG+ D +VRI SL P L ++ + L +
Sbjct: 281 TERKEMSADVVCMSLANVPPGEQRSRFLAVGL-VDNTVRIISLDPSDCLQPLSMQALPAQ 339
Query: 580 IIPRSVLLCAFE----------------GISYLLCALGDGHLLNFLLNMKTGELTDRKKV 623
P S LC E G YL L +G LL +L+ TG+L+D +
Sbjct: 340 --PES--LCIVEMGGTEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTR 395
Query: 624 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 683
LG++P+ L + V A S R + YS + + ++ + + F S P+
Sbjct: 396 YLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPE 455
Query: 684 SLAIAKEGELTIGTIDDIQKLHIR-SIPLGEHPRR-ICHQEQSRTFAI 729
+ L I ++ + + + + PL PR+ + H E + I
Sbjct: 456 GIVAISTNTLRILALEKLGAVFNQVAFPLQYTPRKFVIHPESNNLIII 503
Score = 241 (89.9 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
Identities = 87/363 (23%), Positives = 168/363 (46%)
Query: 746 VRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYC-VGTAY-VLPEENEPTKGRI 803
+R+++ + L+ E S+ C FS+ +Y VG A ++ G +
Sbjct: 569 IRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTGEDWYVLVGVAKDLILSPRSVAGGFV 628
Query: 804 LVF-IVEDG-KLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSE 861
+ +V +G KL+ + + + ++ F G++L + + +++Y D G ++L +
Sbjct: 629 YTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVY-----DLGKKKLLRK 683
Query: 862 CGHHGHILALYV---QTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEI 918
C + HI A Y+ QT G ++V D+ +S + YK E + A D W++ +
Sbjct: 684 C-ENKHI-ANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASL 741
Query: 919 LDDDIYLGAENNFNLFTVR--KNSEGATDEE---------RGRLEVVGEYHLGEFVNRFR 967
LD D GA+ N+ VR N+ DE+ RG L G E + +
Sbjct: 742 LDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLN--GASQKAEVIMNYH 799
Query: 968 HGSLVMRLPDSDV--GQIPTVIFGTVNGVIGVIASLP-HEQYLFLEKLQTNLRKVIKGVG 1024
G V+ L + + G ++++ T++G IG++ HE + F + ++ +LR +
Sbjct: 800 VGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLC 859
Query: 1025 GLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL 1084
G +H +RS+ KN +DGDL E F + + +S+ ++ + E+ K++E++
Sbjct: 860 GRDHLSFRSYY-----FPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDI 914
Query: 1085 -TR 1086
TR
Sbjct: 915 RTR 917
Score = 38 (18.4 bits), Expect = 8.6e-15, Sum P(2) = 8.6e-15
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 728 AICSLKNQSCAEESEM--HFVRLL-----DDQTFEFISTYPL---DTF 765
A+C LK SE H++ + DD+ EF S PL DTF
Sbjct: 41 AMCVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEEGDTF 88
Score = 38 (18.4 bits), Expect = 7.7e-14, Sum P(3) = 7.7e-14
Identities = 16/56 (28%), Positives = 20/56 (35%)
Query: 711 LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFE 766
L E+ R +E S SL N E+ L D T IS P D +
Sbjct: 277 LNEYTER---KEMSADVVCMSLANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQ 329
Score = 37 (18.1 bits), Expect = 7.7e-14, Sum P(3) = 7.7e-14
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 233 GEETIVYCSANAFKAIPIRPSITKAYGRVDADG 265
G++TIV C+ N + + Y +D G
Sbjct: 243 GKKTIVKCAVNQRQVVIALTGGELVYFEMDPSG 275
>POMBASE|SPAPJ698.03c [details] [associations]
symbol:prp12 "U2 snRNP-associated protein Sap130
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000245
"spliceosomal complex assembly" evidence=ISS] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005686 "U2 snRNP"
evidence=ISS] [GO:0030620 "U2 snRNA binding" evidence=ISS]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
InterPro:IPR017986 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 PomBase:SPAPJ698.03c EMBL:CU329670
GenomeReviews:CU329670_GR Gene3D:2.130.10.10 SUPFAM:SSF50978
GO:GO:0005681 GO:GO:0007049 GO:GO:0000245 GO:GO:0005686
GO:GO:0045292 eggNOG:NOG247734 GO:GO:0030620 KO:K12830
HOGENOM:HOG000216677 OMA:FDTIPVA OrthoDB:EOG4FR40R EMBL:AB034966
RefSeq:NP_594414.1 IntAct:Q9UTT2 STRING:Q9UTT2
EnsemblFungi:SPAPJ698.03c.1 GeneID:2543278 KEGG:spo:SPAPJ698.03c
NextBio:20804299 Uniprot:Q9UTT2
Length = 1206
Score = 322 (118.4 bits), Expect = 7.9e-46, Sum P(4) = 7.9e-46
Identities = 107/413 (25%), Positives = 187/413 (45%)
Query: 322 DSQLIKLNLQPDAKG-SYVEVLERYVNLGPIVDFCVVDLERQGQG-QVVTCSGAYKDGSL 379
D+++ N+ +G + ++E +L + D ++ G+ Q+ T G + SL
Sbjct: 401 DNEVGTKNVHFGVRGLQNLSLVEEIPSLYSLTDTLLMKAPSSGEANQLYTVCGRGSNSSL 460
Query: 380 RIVRNGIGINEQASVELQGIK-GMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXX 438
R +R G+ E + EL G +W+L+ + D +D+++++SF + T L +++
Sbjct: 461 RQLRRGLETTEIVASELPGAPIAIWTLKLNQTDVYDSYIILSFTNGT--LVLSIGETVEE 518
Query: 439 XXXXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANA 498
GF S TL + LVQ+ +R + + + +EWK P V + N
Sbjct: 519 ISDSGFLSSVSTLNARQMGRDSLVQIHPKGIRYIRANKQT--SEWKLPQDVYVVQSAIND 576
Query: 499 SQVLLATGGGHLVYLEIGD----GILTEVKHAQ-LEYEISCLDINPIGENPSYSQIAAVG 553
Q+++A G LVY E+ D G L E + + L ++ L + P+ E S +
Sbjct: 577 MQIVVALSNGELVYFEMSDDVEGGQLNEYQERKTLTANVTSLALGPVQEGSRRSNFMCLA 636
Query: 554 MWTDISVRIFSLPDLNLITKEHLGGEIIPRSV-LLCAF----EGIS--YLLCALGDGHLL 606
D +VR+ SL DL T E+L + + LC G+S YL L +G L
Sbjct: 637 C-DDATVRVLSL-DL-YTTLENLSVQALSSPANSLCIIPMNVNGVSTLYLHIGLMNGVYL 693
Query: 607 NFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVN 666
++++ +G+L D + LG + + + + KN V A S R + YS + L S +
Sbjct: 694 RTVIDVTSGQLLDTRTRFLGPRAVKIYPITMKNQNTVLAVSSRTFLAYSYQQNLQLSPIA 753
Query: 667 LKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQK-LHIRSIPLGEHPRRI 718
+ H F S P+ + ++ L I T+D +Q L PL PR+I
Sbjct: 754 YSAIDHASSFASEQCPEGIVAIQKNTLKIFTVDSLQDDLKSDIYPLICTPRKI 806
Score = 205 (77.2 bits), Expect = 7.9e-46, Sum P(4) = 7.9e-46
Identities = 83/371 (22%), Positives = 161/371 (43%)
Query: 733 KNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVL 792
K +S + F+ + D + + I PL E S+ + F + + G+A +
Sbjct: 844 KQNEHTSKSWVSFISVFDMISKKIIHESPLGDNEAAFSMTAAFFKNRDEFFLVAGSATNM 903
Query: 793 PEENEP-TKGRILVFIVED-GK-LQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWM 849
E + G V+ D GK L+LI+ E G +L F G++LA + + +++Y
Sbjct: 904 DLECRTCSHGNFRVYRFHDEGKKLELISHTEIDGIPMALTPFQGRMLAGVGRFLRIY--- 960
Query: 850 LRDDGTRELQSECGHHGHI--LALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARD 907
D G +++ + G + ++ + IVV D S+ ++YK E+ + A D
Sbjct: 961 --DLGNKKMLRK-GELSAVPLFITHITVQASRIVVADSQYSVRFVVYKPEDNHLLTFADD 1017
Query: 908 YNANWMSAVEILDDDIYLGAENNFNLFTVR--KNSEGATDEERGRLEVVGEYHLGEFVNR 965
W + ++D D G + N++ +R ++ DEE +++ H F+N
Sbjct: 1018 TIHRWTTTNVLVDYDTLAGGDKFGNIWLLRCPEHVSKLADEENSESKLI---HEKPFLNS 1074
Query: 966 FRHG-SLVMRLPDSDV-----------GQIPTVIFGTVNGVIGVIAS-LPHEQYLFLEKL 1012
H L+ +D+ G +++ + G +GV + E F ++L
Sbjct: 1075 TPHKLDLMAHFFTNDIPTSLQKVQLVEGAREVLLWTGLLGTVGVFTPFINQEDVRFFQQL 1134
Query: 1013 QTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNV 1072
+ LRK + G +H +RS+ K V +DGDL E + L + I+ ++
Sbjct: 1135 EFLLRKECPPLAGRDHLAYRSYYAPVKCV-----IDGDLCEMYYSLPHPVQEMIANELDR 1189
Query: 1073 SVEELCKRVEE 1083
++ E+ K++E+
Sbjct: 1190 TIAEVSKKIED 1200
Score = 82 (33.9 bits), Expect = 7.9e-46, Sum P(4) = 7.9e-46
Identities = 21/101 (20%), Positives = 51/101 (50%)
Query: 2 SIWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLL--TPQGLQPMLDVPIY 59
S++ Y +T V SC + + + ++IA +R+ I+ + T + +L+ +
Sbjct: 6 SLFLYSLTIQNSNYVQSSCAASLSGKKAQEIVIATESRLLIYKVDATDGRMNCILNQNCF 65
Query: 60 GRIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELI 100
G I + R G +D+L + ++ + +L+++ E ++L+
Sbjct: 66 GIIRNVAPLRLTGFKRDYLVVTSDSGRITILEYNVEKNKLV 106
Score = 64 (27.6 bits), Expect = 7.9e-46, Sum P(4) = 7.9e-46
Identities = 13/54 (24%), Positives = 30/54 (55%)
Query: 298 GETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPI 351
G +++ + + + Y+ + GD L+KL ++ D +G+ VE+ +Y + P+
Sbjct: 302 GPLIVSAVLHKMKGSFFYLLQT-GDGDLLKLTIEHDGQGNVVELRLKYFDTVPL 354
Score = 44 (20.5 bits), Expect = 1.0e-14, Sum P(3) = 1.0e-14
Identities = 13/55 (23%), Positives = 22/55 (40%)
Query: 469 VRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEV 523
+R ++++ + W S N S VL G L+ GDG L ++
Sbjct: 277 LRRQAASANAISTPWNQVNSNSANDGPLIVSAVLHKMKGSFFYLLQTGDGDLLKL 331
Score = 44 (20.5 bits), Expect = 1.0e-14, Sum P(3) = 1.0e-14
Identities = 16/66 (24%), Positives = 29/66 (43%)
Query: 584 SVLLCAFEGISYLLCALGDGHLLNFLLNMK-TGELTDRKKVSLGTQPITLRTFSSKNTTH 642
S +L +G + L GDG LL + G + + + T P+ ++ K T
Sbjct: 307 SAVLHKMKGSFFYLLQTGDGDLLKLTIEHDGQGNVVELRLKYFDTVPLAVQLNILK-TGF 365
Query: 643 VFAASD 648
+F A++
Sbjct: 366 LFVATE 371
Score = 42 (19.8 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 18/59 (30%), Positives = 25/59 (42%)
Query: 318 SSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKD 376
+S D LI + KGS+ +L+ G D + +E GQG VV Y D
Sbjct: 297 NSANDGPLIVSAVLHKMKGSFFYLLQ--TGDG---DLLKLTIEHDGQGNVVELRLKYFD 350
Score = 37 (18.1 bits), Expect = 5.2e-14, Sum P(3) = 5.2e-14
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 502 LLATGGGHLVYLEI---GDGILTEVK 524
LL TG G L+ L I G G + E++
Sbjct: 320 LLQTGDGDLLKLTIEHDGQGNVVELR 345
>RGD|1311636 [details] [associations]
symbol:Sf3b3 "splicing factor 3b, subunit 3" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR004871
Pfam:PF03178 RGD:1311636 GO:GO:0005634 GO:GO:0003676
IPI:IPI00563335 PRIDE:F1LSZ9 Ensembl:ENSRNOT00000044193
UCSC:RGD:1311636 ArrayExpress:F1LSZ9 Uniprot:F1LSZ9
Length = 902
Score = 337 (123.7 bits), Expect = 1.1e-43, Sum P(3) = 1.1e-43
Identities = 112/408 (27%), Positives = 188/408 (46%)
Query: 347 NLGPIVDFC-VVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI-KGMWS 404
+L PI+ FC + DL + Q+ G SLR++R+G+ ++E A EL G +W+
Sbjct: 183 SLSPIL-FCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWT 241
Query: 405 LRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQV 464
+R +D FD +++VSF++ T L +++ GF T TL C + LVQV
Sbjct: 242 VRRHIEDEFDAYIIVSFVNAT--LVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQV 299
Query: 465 TSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIG-DGILTE- 522
+R + + R NEWK+P ++ N QV++A GG LVY E+ G L E
Sbjct: 300 YPDGIRHIRADKRV--NEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEY 357
Query: 523 VKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL-PD--LNLITKEHLGGE 579
+ ++ ++ C+ + + S+ AVG+ D +VRI SL P L ++ + L +
Sbjct: 358 TERKEMSADVVCMSLANVPPGEQRSRFLAVGL-VDNTVRIISLDPSDCLQPLSMQALPAQ 416
Query: 580 IIPRSVLLCAFE----------------GISYLLCALGDGHLLNFLLNMKTGELTDRKKV 623
P S LC E G YL L +G LL +L+ TG+L+D +
Sbjct: 417 --PES--LCIVEMGGTEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTR 472
Query: 624 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 683
LG++P+ L + V A S R + YS + + ++ + + F S P+
Sbjct: 473 YLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPE 532
Query: 684 SLAIAKEGELTIGTIDDIQKLHIR-SIPLGEHPRR-ICHQEQSRTFAI 729
+ L I ++ + + + + PL PR+ + H E + I
Sbjct: 533 GIVAISTNTLRILALEKLGAVFNQVAFPLQYTPRKFVIHPESNNLIII 580
Score = 222 (83.2 bits), Expect = 1.1e-43, Sum P(3) = 1.1e-43
Identities = 75/299 (25%), Positives = 143/299 (47%)
Query: 807 IVEDG-KLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHH 865
+V +G KL+ + + + ++ F G++L + + +++Y D G ++L +C +
Sbjct: 615 LVNNGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVY-----DLGKKKLLRKC-EN 668
Query: 866 GHILALYV---QTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDD 922
HI A Y+ QT G ++V D+ +S + YK E + A D W++ +LD D
Sbjct: 669 KHI-ANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYD 727
Query: 923 IYLGAENNFNLFTVR--KNSEGATDEE---------RGRLEVVGEYHLGEFVNRFRHGSL 971
GA+ N+ VR N+ DE+ RG L G E + + G
Sbjct: 728 TVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLN--GASQKAEVIMNYHVGET 785
Query: 972 VMRLPDSDV--GQIPTVIFGTVNGVIGVIASLP-HEQYLFLEKLQTNLRKVIKGVGGLNH 1028
V+ L + + G ++++ T++G IG++ HE + F + ++ +LR + G +H
Sbjct: 786 VLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDH 845
Query: 1029 EQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL-TR 1086
+RS+ KN +DGDL E F + + +S+ ++ + E+ K++E++ TR
Sbjct: 846 LSFRSYY-----FPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDIRTR 899
Score = 40 (19.1 bits), Expect = 1.1e-43, Sum P(3) = 1.1e-43
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 345 YVNLGPIVDF-CVV-----DLERQGQGQVVTCSGAYKDGSL 379
Y N G D C + DL+ +G + CS +K S+
Sbjct: 38 YKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSM 78
Score = 38 (18.4 bits), Expect = 3.8e-12, Sum P(3) = 3.8e-12
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 728 AICSLKNQSCAEESEM--HFVRLL-----DDQTFEFISTYPL---DTF 765
A+C LK SE H++ + DD+ EF S PL DTF
Sbjct: 118 AMCVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEEGDTF 165
Score = 38 (18.4 bits), Expect = 3.8e-12, Sum P(3) = 3.8e-12
Identities = 16/56 (28%), Positives = 20/56 (35%)
Query: 711 LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFE 766
L E+ R +E S SL N E+ L D T IS P D +
Sbjct: 354 LNEYTER---KEMSADVVCMSLANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQ 406
Score = 37 (18.1 bits), Expect = 7.6e-12, Sum P(3) = 7.6e-12
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 577 GGEIIPRSVLLCAFEGISY 595
GG P VL+C+ I+Y
Sbjct: 20 GGSDGPSGVLICSENYITY 38
Score = 37 (18.1 bits), Expect = 7.6e-12, Sum P(3) = 7.6e-12
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 233 GEETIVYCSANAFKAIPIRPSITKAYGRVDADG 265
G++TIV C+ N + + Y +D G
Sbjct: 320 GKKTIVKCAVNQRQVVIALTGGELVYFEMDPSG 352
>GENEDB_PFALCIPARUM|PFL1680w [details] [associations]
symbol:PFL1680w "splicing factor 3b, subunit 3,
130kD, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR017986 InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0008380 Gene3D:2.130.10.10
SUPFAM:SSF50978 GO:GO:0005681 GO:GO:0003676 EMBL:AE014188 KO:K12830
HOGENOM:HOG000216677 RefSeq:XP_001350742.1
ProteinModelPortal:Q8I574 PRIDE:Q8I574
EnsemblProtists:PFL1680w:mRNA GeneID:811388 KEGG:pfa:PFL1680w
EuPathDB:PlasmoDB:PF3D7_1234800 OMA:PVTSSMC ProtClustDB:CLSZ2733835
Uniprot:Q8I574
Length = 1329
Score = 280 (103.6 bits), Expect = 1.2e-42, Sum P(4) = 1.2e-42
Identities = 90/371 (24%), Positives = 161/371 (43%)
Query: 341 VLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI- 399
++++ +L PI+D ++D + Q+ T G SLRI+++G+ I E A EL G
Sbjct: 429 LVDQIYSLSPILDMKIIDAKNTHTPQIYTLCGRGPRSSLRILQHGLSIEELADNELPGKP 488
Query: 400 KGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYN 459
K +W+++ +D ++VVSF T IL + + TL + N
Sbjct: 489 KYIWTIKKDNLSEYDGYIVVSFEGNTLILEIGESVEEVSDTL--LLNNVTTLHINILYDN 546
Query: 460 QLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDG- 518
+QV +R ++ ++ EW +P + A++N+SQ++++ GG L+Y EI +
Sbjct: 547 SFIQVYDTGIRHING---KVVQEWVAPKNKQIKAASSNSSQIVISLSGGELIYFEIDESH 603
Query: 519 ILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGG 578
L E+ L E+ CL I I N + AVG ++ VR+ S+ + + K+ L
Sbjct: 604 TLVEIFRKNLNVEVLCLSIQQIPPNRVRANFLAVGCLDNV-VRLLSI-EKDKYFKQ-LST 660
Query: 579 EIIPRSVL---LCAFE-----------GISYLLCALGDGHLLNFLLNMKTGELTDRKKVS 624
++P + +C E I +L L G LL +++ G L++
Sbjct: 661 HLLPNNSSPQDICISEMNDNGNTMKERNIIFLNIGLNTGVLLRSIIDPVAGTLSNHYSKY 720
Query: 625 LGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDS 684
LG + I + + + ++ + Y K LYS +N + + F S D
Sbjct: 721 LGAKSIKICPVNVNKNPALLVLCEKTYLCYMHQGKFLYSPLNYDMLEYASSFYSPQCSDG 780
Query: 685 LAIAKEGELTI 695
L I
Sbjct: 781 YVAISSNSLRI 791
Score = 196 (74.1 bits), Expect = 1.2e-42, Sum P(4) = 1.2e-42
Identities = 81/358 (22%), Positives = 155/358 (43%)
Query: 746 VRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYC--VGTAYVLPEENEP-TKGR 802
+++++ + + LD E S+ +C +C VGT L + + T
Sbjct: 983 IKIINPVNLQILDKISLDMEEAALSVCACELE----ALHCLIVGTTTNLSLKTKSLTSAS 1038
Query: 803 ILVFIVE-DGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSE 861
+ V+ + KL L+ + Y ++NGKL+A+I K+++Y G ++L +
Sbjct: 1039 LRVYTYDIQYKLNLLHITPIEEQPYCFCSYNGKLIASIGNKLRIYAL-----GKKKLLKK 1093
Query: 862 CGHHGHILALY-VQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILD 920
C + A+ ++ G+ I D+ +S+ + Y + + + D W++ EILD
Sbjct: 1094 CEYKDIPEAIVSIKISGNRIFACDIRESVLIFFYDPNQNTLRLISDDIIPRWITCSEILD 1153
Query: 921 DDIYLGAENNFNLFTVRKNSEGATDEE--RGRLEVVGEYHLGEFVNR-------FRHGSL 971
+ A+ ++F +R E DE + GE NR F G +
Sbjct: 1154 HHTIMAADKFDSVFILRVPEEAKQDEYGITNKCWYGGEIMNSSTKNRKLEHMMSFHIGEI 1213
Query: 972 VMRLPDSDVGQIPT----VIFGTVNGVIGVIASLPHEQYLFL-EKLQTNLRKVIKGVGGL 1026
V + V PT +I+ T+ G IG +++ L L + L+ LR + G
Sbjct: 1214 VTSM--QKVRLSPTSSECIIYSTIMGTIGAFIPYDNKEELELTQHLEIILRTEKPPLCGR 1271
Query: 1027 NHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL 1084
H +RS+ + +N +DGDL E F LS +I+ + + E++ +++E++
Sbjct: 1272 EHIFFRSYYHP-----VQNVVDGDLCEQFSSLSYDAQKKIANDLERTPEDILRKLEDI 1324
Score = 132 (51.5 bits), Expect = 1.2e-42, Sum P(4) = 1.2e-42
Identities = 34/127 (26%), Positives = 66/127 (51%)
Query: 6 YVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQG-LQPMLDVPIYGRIAT 64
Y +T KPT +T + GNF+ P+ +I+AK +E+ QG L ++ I+G I +
Sbjct: 5 YHLTLQKPTAITKTVYGNFSGPRFHEIIVAKGQVLELLRSDKQGKLNVIISKDIFGIIRS 64
Query: 65 LELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIG-RPTDNGQIGII 123
+ FR G +D++ I ++ + +L+++ E ++ + R + + G R G+ +
Sbjct: 65 ISTFRLTGSNKDYIVIGSDSGRLVILEYNNEKNDFV-RVHCETYGKTGIRRIIPGEYIAV 123
Query: 124 DPDCRLI 130
DP R +
Sbjct: 124 DPKGRAL 130
Score = 62 (26.9 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 28/135 (20%), Positives = 65/135 (48%)
Query: 954 VGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQ 1013
+ EY G V F +L++ + +S V ++ + +N V + ++ ++ F++
Sbjct: 499 LSEYD-GYIVVSFEGNTLILEIGES-VEEVSDTLL--LNNVTTLHINILYDNS-FIQVYD 553
Query: 1014 TNLR----KVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKT 1069
T +R KV++ ++Q ++ ++ + + G+LI +D S T ++ K
Sbjct: 554 TGIRHINGKVVQEWVAPKNKQIKAASSNSSQI-VISLSGGELIYFEIDESHTLVEIFRKN 612
Query: 1070 MNVSVEELCKRVEEL 1084
+NV V LC ++++
Sbjct: 613 LNVEV--LCLSIQQI 625
Score = 61 (26.5 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 30/114 (26%), Positives = 47/114 (41%)
Query: 550 AAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFL 609
A G W ++I + +L ++ K L E SV C E + L+ G N
Sbjct: 974 AGQGKWGSC-IKIINPVNLQILDKISLDMEEAALSVCACELEALHCLIV----GTTTN-- 1026
Query: 610 LNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYS 663
L++KT LT + + T I + N H+ ++P S N KL+ S
Sbjct: 1027 LSLKTKSLTSAS-LRVYTYDIQYKL----NLLHITPIEEQPYCFCSYNGKLIAS 1075
Score = 60 (26.2 bits), Expect = 0.00029, Sum P(3) = 0.00029
Identities = 24/88 (27%), Positives = 44/88 (50%)
Query: 528 LEYEISCLDINPIGENP----SYSQ--IAAVGMWTDISVRIFSLPDLNLITK-EHLGGEI 580
++Y+++ L I PI E P SY+ IA++G +RI++L L+ K E+ +
Sbjct: 1046 IQYKLNLLHITPIEEQPYCFCSYNGKLIASIGN----KLRIYALGKKKLLKKCEY---KD 1098
Query: 581 IPRSVLLCAFEGISYLLCALGDGHLLNF 608
IP +++ G C + + L+ F
Sbjct: 1099 IPEAIVSIKISGNRIFACDIRESVLIFF 1126
Score = 47 (21.6 bits), Expect = 2.6e-27, Sum P(4) = 2.6e-27
Identities = 16/86 (18%), Positives = 41/86 (47%)
Query: 995 IGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIES 1054
I ++A + + + E Q ++K +K + + E+ + +NE + + +GD+
Sbjct: 839 IRMLAIIEADHNSYDENTQREIQKALKDIKLSDTERRKENDNENNNI----YSNGDVDNI 894
Query: 1055 FLDLSRTRMDEISKTMNVSVEELCKR 1080
++ S +E + N+S+ + K+
Sbjct: 895 DVNDSANMNEEFNSNDNISLAQNHKK 920
Score = 39 (18.8 bits), Expect = 1.2e-42, Sum P(4) = 1.2e-42
Identities = 8/41 (19%), Positives = 20/41 (48%)
Query: 282 ITHEKEKVTGLKIELLGETSIASTISYLDNAVVYIGSSYGD 322
+ HE V + + I ++IS L + +++ + +G+
Sbjct: 347 VDHEDGIVKEIVCKYFDTVPIGNSISVLKSGSLFVAAEFGN 387
>UNIPROTKB|Q8I574 [details] [associations]
symbol:PFL1680w "Splicing factor 3b, subunit 3, 130kD,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR017986 InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0008380 Gene3D:2.130.10.10
SUPFAM:SSF50978 GO:GO:0005681 GO:GO:0003676 EMBL:AE014188 KO:K12830
HOGENOM:HOG000216677 RefSeq:XP_001350742.1
ProteinModelPortal:Q8I574 PRIDE:Q8I574
EnsemblProtists:PFL1680w:mRNA GeneID:811388 KEGG:pfa:PFL1680w
EuPathDB:PlasmoDB:PF3D7_1234800 OMA:PVTSSMC ProtClustDB:CLSZ2733835
Uniprot:Q8I574
Length = 1329
Score = 280 (103.6 bits), Expect = 1.2e-42, Sum P(4) = 1.2e-42
Identities = 90/371 (24%), Positives = 161/371 (43%)
Query: 341 VLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI- 399
++++ +L PI+D ++D + Q+ T G SLRI+++G+ I E A EL G
Sbjct: 429 LVDQIYSLSPILDMKIIDAKNTHTPQIYTLCGRGPRSSLRILQHGLSIEELADNELPGKP 488
Query: 400 KGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYN 459
K +W+++ +D ++VVSF T IL + + TL + N
Sbjct: 489 KYIWTIKKDNLSEYDGYIVVSFEGNTLILEIGESVEEVSDTL--LLNNVTTLHINILYDN 546
Query: 460 QLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDG- 518
+QV +R ++ ++ EW +P + A++N+SQ++++ GG L+Y EI +
Sbjct: 547 SFIQVYDTGIRHING---KVVQEWVAPKNKQIKAASSNSSQIVISLSGGELIYFEIDESH 603
Query: 519 ILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGG 578
L E+ L E+ CL I I N + AVG ++ VR+ S+ + + K+ L
Sbjct: 604 TLVEIFRKNLNVEVLCLSIQQIPPNRVRANFLAVGCLDNV-VRLLSI-EKDKYFKQ-LST 660
Query: 579 EIIPRSVL---LCAFE-----------GISYLLCALGDGHLLNFLLNMKTGELTDRKKVS 624
++P + +C E I +L L G LL +++ G L++
Sbjct: 661 HLLPNNSSPQDICISEMNDNGNTMKERNIIFLNIGLNTGVLLRSIIDPVAGTLSNHYSKY 720
Query: 625 LGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDS 684
LG + I + + + ++ + Y K LYS +N + + F S D
Sbjct: 721 LGAKSIKICPVNVNKNPALLVLCEKTYLCYMHQGKFLYSPLNYDMLEYASSFYSPQCSDG 780
Query: 685 LAIAKEGELTI 695
L I
Sbjct: 781 YVAISSNSLRI 791
Score = 196 (74.1 bits), Expect = 1.2e-42, Sum P(4) = 1.2e-42
Identities = 81/358 (22%), Positives = 155/358 (43%)
Query: 746 VRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYC--VGTAYVLPEENEP-TKGR 802
+++++ + + LD E S+ +C +C VGT L + + T
Sbjct: 983 IKIINPVNLQILDKISLDMEEAALSVCACELE----ALHCLIVGTTTNLSLKTKSLTSAS 1038
Query: 803 ILVFIVE-DGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSE 861
+ V+ + KL L+ + Y ++NGKL+A+I K+++Y G ++L +
Sbjct: 1039 LRVYTYDIQYKLNLLHITPIEEQPYCFCSYNGKLIASIGNKLRIYAL-----GKKKLLKK 1093
Query: 862 CGHHGHILALY-VQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILD 920
C + A+ ++ G+ I D+ +S+ + Y + + + D W++ EILD
Sbjct: 1094 CEYKDIPEAIVSIKISGNRIFACDIRESVLIFFYDPNQNTLRLISDDIIPRWITCSEILD 1153
Query: 921 DDIYLGAENNFNLFTVRKNSEGATDEE--RGRLEVVGEYHLGEFVNR-------FRHGSL 971
+ A+ ++F +R E DE + GE NR F G +
Sbjct: 1154 HHTIMAADKFDSVFILRVPEEAKQDEYGITNKCWYGGEIMNSSTKNRKLEHMMSFHIGEI 1213
Query: 972 VMRLPDSDVGQIPT----VIFGTVNGVIGVIASLPHEQYLFL-EKLQTNLRKVIKGVGGL 1026
V + V PT +I+ T+ G IG +++ L L + L+ LR + G
Sbjct: 1214 VTSM--QKVRLSPTSSECIIYSTIMGTIGAFIPYDNKEELELTQHLEIILRTEKPPLCGR 1271
Query: 1027 NHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL 1084
H +RS+ + +N +DGDL E F LS +I+ + + E++ +++E++
Sbjct: 1272 EHIFFRSYYHP-----VQNVVDGDLCEQFSSLSYDAQKKIANDLERTPEDILRKLEDI 1324
Score = 132 (51.5 bits), Expect = 1.2e-42, Sum P(4) = 1.2e-42
Identities = 34/127 (26%), Positives = 66/127 (51%)
Query: 6 YVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQG-LQPMLDVPIYGRIAT 64
Y +T KPT +T + GNF+ P+ +I+AK +E+ QG L ++ I+G I +
Sbjct: 5 YHLTLQKPTAITKTVYGNFSGPRFHEIIVAKGQVLELLRSDKQGKLNVIISKDIFGIIRS 64
Query: 65 LELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIG-RPTDNGQIGII 123
+ FR G +D++ I ++ + +L+++ E ++ + R + + G R G+ +
Sbjct: 65 ISTFRLTGSNKDYIVIGSDSGRLVILEYNNEKNDFV-RVHCETYGKTGIRRIIPGEYIAV 123
Query: 124 DPDCRLI 130
DP R +
Sbjct: 124 DPKGRAL 130
Score = 62 (26.9 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 28/135 (20%), Positives = 65/135 (48%)
Query: 954 VGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQ 1013
+ EY G V F +L++ + +S V ++ + +N V + ++ ++ F++
Sbjct: 499 LSEYD-GYIVVSFEGNTLILEIGES-VEEVSDTLL--LNNVTTLHINILYDNS-FIQVYD 553
Query: 1014 TNLR----KVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKT 1069
T +R KV++ ++Q ++ ++ + + G+LI +D S T ++ K
Sbjct: 554 TGIRHINGKVVQEWVAPKNKQIKAASSNSSQI-VISLSGGELIYFEIDESHTLVEIFRKN 612
Query: 1070 MNVSVEELCKRVEEL 1084
+NV V LC ++++
Sbjct: 613 LNVEV--LCLSIQQI 625
Score = 61 (26.5 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 30/114 (26%), Positives = 47/114 (41%)
Query: 550 AAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFL 609
A G W ++I + +L ++ K L E SV C E + L+ G N
Sbjct: 974 AGQGKWGSC-IKIINPVNLQILDKISLDMEEAALSVCACELEALHCLIV----GTTTN-- 1026
Query: 610 LNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYS 663
L++KT LT + + T I + N H+ ++P S N KL+ S
Sbjct: 1027 LSLKTKSLTSAS-LRVYTYDIQYKL----NLLHITPIEEQPYCFCSYNGKLIAS 1075
Score = 60 (26.2 bits), Expect = 0.00029, Sum P(3) = 0.00029
Identities = 24/88 (27%), Positives = 44/88 (50%)
Query: 528 LEYEISCLDINPIGENP----SYSQ--IAAVGMWTDISVRIFSLPDLNLITK-EHLGGEI 580
++Y+++ L I PI E P SY+ IA++G +RI++L L+ K E+ +
Sbjct: 1046 IQYKLNLLHITPIEEQPYCFCSYNGKLIASIGN----KLRIYALGKKKLLKKCEY---KD 1098
Query: 581 IPRSVLLCAFEGISYLLCALGDGHLLNF 608
IP +++ G C + + L+ F
Sbjct: 1099 IPEAIVSIKISGNRIFACDIRESVLIFF 1126
Score = 47 (21.6 bits), Expect = 2.6e-27, Sum P(4) = 2.6e-27
Identities = 16/86 (18%), Positives = 41/86 (47%)
Query: 995 IGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIES 1054
I ++A + + + E Q ++K +K + + E+ + +NE + + +GD+
Sbjct: 839 IRMLAIIEADHNSYDENTQREIQKALKDIKLSDTERRKENDNENNNI----YSNGDVDNI 894
Query: 1055 FLDLSRTRMDEISKTMNVSVEELCKR 1080
++ S +E + N+S+ + K+
Sbjct: 895 DVNDSANMNEEFNSNDNISLAQNHKK 920
Score = 39 (18.8 bits), Expect = 1.2e-42, Sum P(4) = 1.2e-42
Identities = 8/41 (19%), Positives = 20/41 (48%)
Query: 282 ITHEKEKVTGLKIELLGETSIASTISYLDNAVVYIGSSYGD 322
+ HE V + + I ++IS L + +++ + +G+
Sbjct: 347 VDHEDGIVKEIVCKYFDTVPIGNSISVLKSGSLFVAAEFGN 387
>UNIPROTKB|F5GZ34 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] InterPro:IPR004871 Pfam:PF03178
GO:GO:0005634 GO:GO:0016055 GO:GO:0003684 EMBL:AP003108
HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI01010454
ProteinModelPortal:F5GZ34 SMR:F5GZ34 Ensembl:ENST00000538470
ArrayExpress:F5GZ34 Bgee:F5GZ34 Uniprot:F5GZ34
Length = 187
Score = 455 (165.2 bits), Expect = 6.0e-42, P = 6.0e-42
Identities = 98/187 (52%), Positives = 124/187 (66%)
Query: 913 MSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLV 972
MSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEFVN F HGSLV
Sbjct: 1 MSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLV 60
Query: 973 MR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQW 1031
M+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK VG + H W
Sbjct: 61 MQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFW 120
Query: 1032 RSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN----------VSVEELCKRV 1081
RSF+ E+KT A F+DGDLIESFLD+SR +M E+ + + ++L K V
Sbjct: 121 RSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVV 180
Query: 1082 EELTRLH 1088
EELTR+H
Sbjct: 181 EELTRIH 187
>UNIPROTKB|F5GZY8 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9606
"Homo sapiens" [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] GO:GO:0016055 GO:GO:0003684 EMBL:AP003108
HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI01011929
ProteinModelPortal:F5GZY8 SMR:F5GZY8 Ensembl:ENST00000542337
ArrayExpress:F5GZY8 Bgee:F5GZY8 Uniprot:F5GZY8
Length = 146
Score = 453 (164.5 bits), Expect = 9.9e-42, P = 9.9e-42
Identities = 85/144 (59%), Positives = 114/144 (79%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+IA
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIA 62
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIG 121
+ELFRP GE++D LFI T +Y C+L++ ES ++ITRA G+V DRIGRP++ G IG
Sbjct: 63 VMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIG 122
Query: 122 IIDPDCRLIGLHLYDGLFKVIPFD 145
IIDP+CR+IGL LYDGLFKVIP D
Sbjct: 123 IIDPECRMIGLRLYDGLFKVIPLD 146
>TAIR|locus:2081576 [details] [associations]
symbol:AT3G11960 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM;IEA;ISS] [GO:0008150 "biological_process"
evidence=ND] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=RCA] [GO:0006486 "protein glycosylation"
evidence=RCA] [GO:0009755 "hormone-mediated signaling pathway"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0048825 "cotyledon development" evidence=RCA]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003676 KO:K12830 EMBL:BT006164
EMBL:AK229623 IPI:IPI00530914 RefSeq:NP_187802.2 UniGene:At.5413
ProteinModelPortal:Q84R20 IntAct:Q84R20 PaxDb:Q84R20 PRIDE:Q84R20
EnsemblPlants:AT3G11960.1 GeneID:820369 KEGG:ath:AT3G11960
TAIR:At3g11960 eggNOG:NOG322382 HOGENOM:HOG000030342
InParanoid:Q84R20 OMA:GMLLRFE PhylomeDB:Q84R20
ProtClustDB:CLSN2690873 ArrayExpress:Q84R20 Genevestigator:Q84R20
Uniprot:Q84R20
Length = 1379
Score = 222 (83.2 bits), Expect = 6.6e-31, Sum P(4) = 6.6e-31
Identities = 56/209 (26%), Positives = 102/209 (48%)
Query: 347 NLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINE--QASVELQGIKGMWS 404
N+ PI+DF V+D + + + Q+ C G +GSLRI+R+GI + + + + QGI G W+
Sbjct: 468 NIAPILDFSVMDDQNEKRDQIFACCGVTPEGSLRIIRSGINVEKLLKTAPVYQGITGTWT 527
Query: 405 LRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQV 464
++ D + +FLV+SF+ ETR+L++ L GF S T C LVQ+
Sbjct: 528 VKMKLTDVYHSFLVLSFVEETRVLSVGLSFKDVTDSV-GFQSDVCTFACGLVADGLLVQI 586
Query: 465 TSGSVRLVSST----------SRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYL- 513
++RL T S + W P S+++ + ++++T + +
Sbjct: 587 HQDAIRLCMPTMDAHSDGIPVSSPFFSSW-FPENVSISLGAVGQNLIVVSTSNPCFLSIL 645
Query: 514 ---EIGDGI--LTEVKHAQLEYEISCLDI 537
+ + E++ L+YE+SC+ +
Sbjct: 646 GVKSVSSQCCEIYEIQRVTLQYEVSCISV 674
Score = 138 (53.6 bits), Expect = 6.6e-31, Sum P(4) = 6.6e-31
Identities = 43/192 (22%), Positives = 88/192 (45%)
Query: 625 LGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDS 684
+G P+ L FS + + A SDRP ++ ++ + L Y++++ + +H P S P
Sbjct: 822 IGITPVFLVPFSDSLDSDIIALSDRPWLLQTARQSLSYTSISFQPSTHATPVCSFECPQG 881
Query: 685 LAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLK-NQSCAEESEM 743
+ E L + + ++ + + LG PR++ + +S+ + +C +
Sbjct: 882 ILFVSENCLHLVEMVHSKRRNAQKFQLGGTPRKVIYHSESKLLIVMRTDLYDTCTSD--- 938
Query: 744 HFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAY-----VLPE-ENE 797
+ +D + +S+Y L E G S+ ++ + VGT+ +LP E E
Sbjct: 939 --ICCVDPLSGSVLSSYKLKPGETGKSMELVRVGNEHVLV--VGTSLSSGPAILPSGEAE 994
Query: 798 PTKGRILVFIVE 809
TKGR+++ +E
Sbjct: 995 STKGRVIILCLE 1006
Score = 121 (47.7 bits), Expect = 6.6e-31, Sum P(4) = 6.6e-31
Identities = 38/126 (30%), Positives = 61/126 (48%)
Query: 957 YHLGEFVNRFRHGSLVMRLPDSDV----G---QIPT----VIFGTVNGVIGVIASLPHEQ 1005
Y++GE + G + +LP DV G I T +I GT+ G I V A + E+
Sbjct: 1220 YYMGEIAMSIKKGCNIYKLPADDVLRSYGLSKSIDTADDTIIAGTLLGSIFVFAPISSEE 1279
Query: 1006 YLFLEKLQTNL--RKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRM 1063
Y LE +Q L + V G +H ++R N + A+ LDGD++ FL+L+ +
Sbjct: 1280 YELLEGVQAKLGIHPLTAPVLGNDHNEFRGRENPSQ---ARKILDGDMLAQFLELTNRQQ 1336
Query: 1064 DEISKT 1069
+ + T
Sbjct: 1337 ESVLST 1342
Score = 56 (24.8 bits), Expect = 6.6e-31, Sum P(4) = 6.6e-31
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 12 KPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGL-QPMLDVPIYGRIATL 65
+P+ V G F SP +++ K T IE+ ++ G+ + + + ++G I L
Sbjct: 43 RPSVVLQVAYGYFRSPSSRDIVFGKETCIELVVIGEDGIVESVCEQYVFGTIKDL 97
Score = 43 (20.2 bits), Expect = 2.3e-12, Sum P(4) = 2.3e-12
Identities = 19/70 (27%), Positives = 32/70 (45%)
Query: 501 VLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPI-------GENPSYSQI-AAV 552
+L GG + E+ DG + ++ +L + S +I PI +N QI A
Sbjct: 433 ILWIEGGFLATFAEMADGTVFKLGTEKLHWMSSIQNIAPILDFSVMDDQNEKRDQIFACC 492
Query: 553 GMWTDISVRI 562
G+ + S+RI
Sbjct: 493 GVTPEGSLRI 502
>UNIPROTKB|F5H198 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871 Pfam:PF03178
GO:GO:0005634 GO:GO:0003676 EMBL:AP003108 HGNC:HGNC:2717
ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI01014884
ProteinModelPortal:F5H198 SMR:F5H198 Ensembl:ENST00000543658
ArrayExpress:F5H198 Bgee:F5H198 Uniprot:F5H198
Length = 162
Score = 203 (76.5 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 38/67 (56%), Positives = 54/67 (80%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+IA
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIA 62
Query: 64 TLELFRP 70
+ELFRP
Sbjct: 63 VMELFRP 69
Score = 165 (63.1 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 34/84 (40%), Positives = 50/84 (59%)
Query: 724 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 782
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 79 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 138
Query: 783 YYCVGTAYVLPEENEPTKGRILVF 806
Y+ VGTA V PEE EP +GRI+VF
Sbjct: 139 YFIVGTAMVYPEEAEPKQGRIVVF 162
>POMBASE|SPCC11E10.08 [details] [associations]
symbol:rik1 "silencing protein Rik1" species:4896
"Schizosaccharomyces pombe" [GO:0000790 "nuclear chromatin"
evidence=TAS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006348 "chromatin silencing at telomere" evidence=TAS]
[GO:0007535 "donor selection" evidence=IMP] [GO:0030466 "chromatin
silencing at silent mating-type cassette" evidence=IMP] [GO:0030702
"chromatin silencing at centromere" evidence=IMP] [GO:0030989
"dynein-driven meiotic oscillatory nuclear movement" evidence=IGI]
[GO:0034613 "cellular protein localization" evidence=IMP]
[GO:0035391 "maintenance of chromatin silencing at silent
mating-type cassette" evidence=NAS] [GO:0043234 "protein complex"
evidence=EXP] [GO:0043494 "CLRC ubiquitin ligase complex"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045141 "meiotic telomere clustering" evidence=IMP] [GO:0051572
"negative regulation of histone H3-K4 methylation" evidence=IMP]
[GO:0051574 "positive regulation of histone H3-K9 methylation"
evidence=IMP] [GO:0000723 "telomere maintenance" evidence=IMP]
InterPro:IPR004871 Pfam:PF03178 PomBase:SPCC11E10.08 GO:GO:0005737
GO:GO:0034613 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732
GO:GO:0003677 GO:GO:0006351 GO:GO:0016568 GO:GO:0000790
GO:GO:0030702 GO:GO:0006348 GO:GO:0030989 GO:GO:0051572
GO:GO:0045141 GO:GO:0051574 GO:GO:0007535 GO:GO:0035391
GO:GO:0043494 EMBL:AF136156 PIR:T40859 RefSeq:NP_588204.1
DIP:DIP-35634N IntAct:Q10426 STRING:Q10426
EnsemblFungi:SPCC11E10.08.1 GeneID:2539050 KEGG:spo:SPCC11E10.08
eggNOG:NOG255855 OrthoDB:EOG4Q887H NextBio:20800224 Uniprot:Q10426
Length = 1040
Score = 255 (94.8 bits), Expect = 1.7e-26, Sum P(3) = 1.7e-26
Identities = 117/495 (23%), Positives = 219/495 (44%)
Query: 521 TEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKE-HLGGE 579
TEV E EISCLD + + QI VG W+ V I + D + I+
Sbjct: 497 TEVARKVFESEISCLDFS------AQFQIG-VGFWSK-QVMILTFSDNSSISCAFQTNVP 548
Query: 580 IIPRSVLLCAFEGI----SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTF 635
+PR+++L EG+ + LL + G G +++L K + K GT P++ R F
Sbjct: 549 SLPRNIIL---EGVGVDRNLLLVSSGSGEFKSYVL-FKNNLVFSETK-HFGTTPVSFRRF 603
Query: 636 SSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTI 695
+ T++ +D P ++Y N L Y +++ + +C F + D L G L
Sbjct: 604 TMNIGTYIICNNDCPHMVYGFNGALCYMPLSMPQSYDVCQFRDNSGKDFLISVSLGGLKF 663
Query: 696 GTIDDIQKLHIRSIPLGEHP-RRICHQEQS--RTFAICSLKNQSCAEESEMHFVRLLDDQ 752
++ + +L R + L P + I Q + RT +S E + V DD
Sbjct: 664 LQLNPLPELTPRKVLLEHVPLQAIIFQNKLLLRTLENRYEDYESYKENYHLELVDSYDDN 723
Query: 753 TFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILV--FIVED 810
+F S + E +L + +S++ VGT+ + ++ P GR+++ F E
Sbjct: 724 SFRVFSFTENERCE---KVLKIN---ESSLL--VGTSIIEQDKLVPVNGRLILLEFEKEL 775
Query: 811 GKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILA 870
L++++ AV L +N + + A Q++ + K L ++ + S +L
Sbjct: 776 QSLKVVSSMVLSAAVIDLGVYNDRYIVAFGQQVAIVK--LTEERLM-IDSRISLGSIVLQ 832
Query: 871 LYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENN 930
L V+ G+ I + D + +++ + ++ + R + N + A + + +Y+ A N+
Sbjct: 833 LIVE--GNEIAIADSIGRFTIMYFDGQKFIVVARYL-FGENIVKAA-LYEGTVYIIATNS 888
Query: 931 FNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGT 990
L +R N + +R E V YHL + V++F++ + +++ P ++F T
Sbjct: 889 GLLKLLRYNKDAKNFNDRFICESV--YHLHDKVSKFQN----FPITNTNSFLEPKMLFAT 942
Query: 991 VNGVIGVIASLPHEQ 1005
G IG I SL ++
Sbjct: 943 EIGAIGSIVSLKDKE 957
Score = 109 (43.4 bits), Expect = 1.7e-26, Sum P(3) = 1.7e-26
Identities = 43/197 (21%), Positives = 86/197 (43%)
Query: 19 SCVGNFTSPQELNLIIAKCTRIEIHLLTP-QGLQPMLDVPIYGRIATLELFRPHGEAQDF 77
SC +F S + L++ + +I I+L + GLQ +P++ + + +RP G +D+
Sbjct: 18 SC--HFISSENC-LVLLQALKINIYLCSEVHGLQFFTSIPLFSTVKHIRPYRPPGLDRDY 74
Query: 78 LFIATERYKFCVLQWDAESSELITRAMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHL-YD 136
LF+ + + WD + ++I V R+ P + D R+ + L D
Sbjct: 75 LFVVLNDDTYFSIYWDEDYQKVIVDHP-PVRYRVTFPWNRNAKSYCLVDLRMRAIFLSID 133
Query: 137 GL----FKVIPFDNK---GQ-LKEAFNIRLEELQVLDIKFLYGCAKPTIVVLYQDNKDAR 188
+ +++ + + G+ + F + D+ L + PT+VVL+ D D
Sbjct: 134 EISMICIRILSAEERLKTGRSIDSGFPFSFPVHLIYDMCILNDSSTPTLVVLHSDGLDC- 192
Query: 189 HVKTYEVALKDKDFVEG 205
+V + + L K +G
Sbjct: 193 YVTAFLLDLSSKSLGKG 209
Score = 77 (32.2 bits), Expect = 1.7e-26, Sum P(3) = 1.7e-26
Identities = 32/131 (24%), Positives = 63/131 (48%)
Query: 304 STISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVV--DLER 361
++++ + +++IGS +S+LI L+ D ++ NLGPI D V+ D+E+
Sbjct: 306 TSLNSIHEGLLFIGSKNSESKLINLSTLKD--------VDSIPNLGPIHDLLVLKNDIEK 357
Query: 362 QGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSF 421
+ C+G ++ SL ++ + ++ ++ GI L S + L + F
Sbjct: 358 S----FLVCAGTPRNASLIYFQHALKLDILGQTKISGILRAMVLPSYPEHK----LFLGF 409
Query: 422 ISETRILAMNL 432
SET +A N+
Sbjct: 410 PSET--VAFNI 418
Score = 44 (20.5 bits), Expect = 0.00023, Sum P(4) = 0.00023
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 1042 DAKNFLDGDLIESFLDLSRTRMDEISKTMNVSV 1074
DAKNF D + ES L D++SK N +
Sbjct: 899 DAKNFNDRFICESVYHLH----DKVSKFQNFPI 927
Score = 42 (19.8 bits), Expect = 0.00023, Sum P(4) = 0.00023
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 807 IVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLY 846
I ED +L+L TK +L+ NG+ + + + +Y
Sbjct: 418 IKEDFQLELDPSLSTKERTIALSGTNGEFVQVTSTFLCIY 457
Score = 38 (18.4 bits), Expect = 1.8e-22, Sum P(3) = 1.8e-22
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 292 LKIELLGETSIASTI 306
LK+++LG+T I+ +
Sbjct: 378 LKLDILGQTKISGIL 392
>WB|WBGene00022301 [details] [associations]
symbol:cpsf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IMP]
[GO:0010171 "body morphogenesis" evidence=IMP] [GO:0040027
"negative regulation of vulval development" evidence=IMP]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006378 GO:GO:0010171 GO:GO:0040018
GO:GO:0000003 GO:GO:0003723 GO:GO:0040027 eggNOG:COG5161 KO:K14401
GO:GO:0005847 GO:GO:0006379 GeneTree:ENSGT00550000075040
OMA:NIGDNRY HOGENOM:HOG000007904 EMBL:FO081666 RefSeq:NP_500157.2
ProteinModelPortal:Q9N4C2 MINT:MINT-3384281 STRING:Q9N4C2
PaxDb:Q9N4C2 EnsemblMetazoa:Y76B12C.7.1 EnsemblMetazoa:Y76B12C.7.2
GeneID:177003 KEGG:cel:CELE_Y76B12C.7 CTD:177003 WormBase:Y76B12C.7
InParanoid:Q9N4C2 NextBio:894932 Uniprot:Q9N4C2
Length = 1454
Score = 214 (80.4 bits), Expect = 4.7e-26, Sum P(4) = 4.7e-26
Identities = 81/314 (25%), Positives = 152/314 (48%)
Query: 791 VLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWML 850
V+PE ++PT R K++++ +KE KG V L A NG LL + QK+ + W
Sbjct: 1153 VVPEPDQPTSNR---------KIKVLFDKEQKGPVTGLCAINGLLLCGMGQKV--FIWQF 1201
Query: 851 RDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYN- 909
+D+ + S H ++ L+ + + D +S+SL+ ++ + A+ +RD
Sbjct: 1202 KDNDLMGI-SFLDMHYYVYQLH--SLRTIAIACDARESMSLIRFQEDNKAMSIASRDDRK 1258
Query: 910 -ANWMSAVEILDDDIYLG---AENNFNLFTVRKNSEGATDEERG-RLEVVGEYHLGEFVN 964
A A +++ D ++G ++ N+ T+ + A + G RL V ++G +N
Sbjct: 1259 CAQPPMASQLVVDGAHVGFLLSDETGNI-TMFNYAPEAPESNGGERLTVRAAINIGTNIN 1317
Query: 965 RF-R---HGSLVMRLPDSD----VGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNL 1016
F R H SL ++L + D + Q T +F +++G G + L + Y L LQT +
Sbjct: 1318 AFVRLRGHTSL-LQLNNEDEKEAIEQRMTTVFASLDGSFGFVRPLTEKSYRRLHFLQTFI 1376
Query: 1017 RKVIKGVGGLNHEQWRSFNNEKKTVD---AKNFLDGDLIESFLDLSRTRMDEISKTMNVS 1073
V + GL+ + RS + V+ A+N +DGD++E +L LS ++++ + V
Sbjct: 1377 GSVTPQIAGLHIKGSRSAKPSQPIVNGRNARNLIDGDVVEQYLHLSLYDKTDLARRLGVG 1436
Query: 1074 VEELCKRVEELTRL 1087
+ + +L R+
Sbjct: 1437 RYHIIDDLMQLRRM 1450
Score = 119 (46.9 bits), Expect = 4.7e-26, Sum P(4) = 4.7e-26
Identities = 36/131 (27%), Positives = 57/131 (43%)
Query: 124 DPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQ-----VLDIKFLYGCAKPTIV 178
DP R +Y ++PF + ++ I L+++ + D+ FL G +PTI+
Sbjct: 145 DPSNRCAACLVYGKHIAILPFHENSKRIHSYVIPLKQIDPRLDNIADMVFLDGYYEPTIL 204
Query: 179 VLYQ--DNKDARHVKTYE--------VALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCG 228
LY+ R Y+ V + D+ F W NL L+P+P PL G
Sbjct: 205 FLYEPIQTTPGRACVRYDTMCIMGVSVNIVDRQFAV-VWQTANLPMDCSQLLPIPKPLGG 263
Query: 229 VLIIGEETIVY 239
L+ G T+VY
Sbjct: 264 ALVFGSNTVVY 274
Score = 92 (37.4 bits), Expect = 4.7e-26, Sum P(4) = 4.7e-26
Identities = 58/234 (24%), Positives = 99/234 (42%)
Query: 342 LERYVNLGPIVDFCV----------VDLERQGQG-QVVTCSGAYKDGSLRIVRNGIGINE 390
L+R N+GP+ CV VD +R+ +VT SG K+G+L + + +
Sbjct: 443 LDRLRNVGPVKSMCVGRPNYMSNDLVDAKRRDPVFDLVTASGHGKNGALCVHQRSLRPEI 502
Query: 391 QASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQT 450
S L+G + +W++ ++ +L+VS + T IL L F + T
Sbjct: 503 ITSSLLEGAEQLWAVGRKENESHK-YLIVSRVRSTLIL--ELGEELVELEEQLFVTGEPT 559
Query: 451 LFCHDAIYNQL-VQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGH 509
+ + L VQVTS + LV T + E + V A+ V L T G
Sbjct: 560 VAAGELSQGALAVQVTSTCIALV--TDGQQMQEVHIDSNFPVIQASIVDPYVALLTQNGR 617
Query: 510 LVYLEIGDGILTEVKHAQL-EYEISCLDI---NPIGENPSYSQIAAVGMWTDIS 559
L+ E+ + E + QL E +IS + +N +Q+ ++ ++ D S
Sbjct: 618 LLLYEL----VME-PYVQLREVDISATSFATWHATAQN--LTQLTSISIYADAS 664
Score = 70 (29.7 bits), Expect = 4.2e-11, Sum P(4) = 4.2e-11
Identities = 31/110 (28%), Positives = 56/110 (50%)
Query: 740 ESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPT 799
+SE+ R+ D F++ YP+ E G +I + +S+VY V + +P+ P+
Sbjct: 999 KSELRIARMHPD--FDYEMPYPVKKIEVGRTIHHVRYLMNSDVYAVVSS---IPK---PS 1050
Query: 800 KGRILVFIVEDGKLQLIAEKETKGAV-----YSLNAFNGKLLAAI-NQKI 843
+I V ++ D K + I EK+ + Y+LN F+ + AA+ N +I
Sbjct: 1051 N-KIWV-VMNDDKQEEIHEKDENFVLPAPPKYTLNLFSSQDWAAVPNTEI 1098
Score = 66 (28.3 bits), Expect = 4.7e-26, Sum P(4) = 4.7e-26
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 289 VTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLE 343
V L+ + ETSIA +++ +++GS GDSQL++ L + V+ L+
Sbjct: 344 VKSLEFSKVYETSIAYSLTVCAPGHLFVGSRLGDSQLLEYTLLKTTRDCAVKRLK 398
Score = 49 (22.3 bits), Expect = 2.6e-24, Sum P(4) = 2.6e-24
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 304 STISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLE 343
ST Y+++ + +GS GD L L L + G V+ LE
Sbjct: 311 STSVYMEDGRIAVGSRDGD--LFLLRLMTSSGGGTVKSLE 348
Score = 43 (20.2 bits), Expect = 1.9e-08, Sum P(4) = 1.9e-08
Identities = 27/107 (25%), Positives = 48/107 (44%)
Query: 648 DRPTVIYSSNK-KLLYSNVNLKEVSHMCPFNS---AAFPDSLAI--AKEGELT-IGTIDD 700
D+PT S+ K K+L+ V+ +C N + I K+ +L I +D
Sbjct: 1158 DQPT---SNRKIKVLFDKEQKGPVTGLCAINGLLLCGMGQKVFIWQFKDNDLMGISFLDM 1214
Query: 701 ---IQKLH-IRSIPLGEHPRR----ICHQEQSRTFAICSLKNQSCAE 739
+ +LH +R+I + R I QE ++ +I S ++ CA+
Sbjct: 1215 HYYVYQLHSLRTIAIACDARESMSLIRFQEDNKAMSIASRDDRKCAQ 1261
Score = 40 (19.1 bits), Expect = 3.8e-08, Sum P(4) = 3.8e-08
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 1064 DEISKTMNVSVEELCKRVEE 1083
DE ++ +N +++LC+RV E
Sbjct: 837 DE-AEQLNTEMKQLCERVLE 855
Score = 39 (18.8 bits), Expect = 4.8e-08, Sum P(4) = 4.8e-08
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 602 DGHLLNFLLNMKTGELT 618
DG + FLL+ +TG +T
Sbjct: 1271 DGAHVGFLLSDETGNIT 1287
>UNIPROTKB|Q9N4C2 [details] [associations]
symbol:cpsf-1 "Probable cleavage and polyadenylation
specificity factor subunit 1" species:6239 "Caenorhabditis elegans"
[GO:0006378 "mRNA polyadenylation" evidence=NAS] [GO:0006379 "mRNA
cleavage" evidence=NAS] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=NAS]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006378 GO:GO:0010171 GO:GO:0040018
GO:GO:0000003 GO:GO:0003723 GO:GO:0040027 eggNOG:COG5161 KO:K14401
GO:GO:0005847 GO:GO:0006379 GeneTree:ENSGT00550000075040
OMA:NIGDNRY HOGENOM:HOG000007904 EMBL:FO081666 RefSeq:NP_500157.2
ProteinModelPortal:Q9N4C2 MINT:MINT-3384281 STRING:Q9N4C2
PaxDb:Q9N4C2 EnsemblMetazoa:Y76B12C.7.1 EnsemblMetazoa:Y76B12C.7.2
GeneID:177003 KEGG:cel:CELE_Y76B12C.7 CTD:177003 WormBase:Y76B12C.7
InParanoid:Q9N4C2 NextBio:894932 Uniprot:Q9N4C2
Length = 1454
Score = 214 (80.4 bits), Expect = 4.7e-26, Sum P(4) = 4.7e-26
Identities = 81/314 (25%), Positives = 152/314 (48%)
Query: 791 VLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWML 850
V+PE ++PT R K++++ +KE KG V L A NG LL + QK+ + W
Sbjct: 1153 VVPEPDQPTSNR---------KIKVLFDKEQKGPVTGLCAINGLLLCGMGQKV--FIWQF 1201
Query: 851 RDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYN- 909
+D+ + S H ++ L+ + + D +S+SL+ ++ + A+ +RD
Sbjct: 1202 KDNDLMGI-SFLDMHYYVYQLH--SLRTIAIACDARESMSLIRFQEDNKAMSIASRDDRK 1258
Query: 910 -ANWMSAVEILDDDIYLG---AENNFNLFTVRKNSEGATDEERG-RLEVVGEYHLGEFVN 964
A A +++ D ++G ++ N+ T+ + A + G RL V ++G +N
Sbjct: 1259 CAQPPMASQLVVDGAHVGFLLSDETGNI-TMFNYAPEAPESNGGERLTVRAAINIGTNIN 1317
Query: 965 RF-R---HGSLVMRLPDSD----VGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNL 1016
F R H SL ++L + D + Q T +F +++G G + L + Y L LQT +
Sbjct: 1318 AFVRLRGHTSL-LQLNNEDEKEAIEQRMTTVFASLDGSFGFVRPLTEKSYRRLHFLQTFI 1376
Query: 1017 RKVIKGVGGLNHEQWRSFNNEKKTVD---AKNFLDGDLIESFLDLSRTRMDEISKTMNVS 1073
V + GL+ + RS + V+ A+N +DGD++E +L LS ++++ + V
Sbjct: 1377 GSVTPQIAGLHIKGSRSAKPSQPIVNGRNARNLIDGDVVEQYLHLSLYDKTDLARRLGVG 1436
Query: 1074 VEELCKRVEELTRL 1087
+ + +L R+
Sbjct: 1437 RYHIIDDLMQLRRM 1450
Score = 119 (46.9 bits), Expect = 4.7e-26, Sum P(4) = 4.7e-26
Identities = 36/131 (27%), Positives = 57/131 (43%)
Query: 124 DPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQ-----VLDIKFLYGCAKPTIV 178
DP R +Y ++PF + ++ I L+++ + D+ FL G +PTI+
Sbjct: 145 DPSNRCAACLVYGKHIAILPFHENSKRIHSYVIPLKQIDPRLDNIADMVFLDGYYEPTIL 204
Query: 179 VLYQ--DNKDARHVKTYE--------VALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCG 228
LY+ R Y+ V + D+ F W NL L+P+P PL G
Sbjct: 205 FLYEPIQTTPGRACVRYDTMCIMGVSVNIVDRQFAV-VWQTANLPMDCSQLLPIPKPLGG 263
Query: 229 VLIIGEETIVY 239
L+ G T+VY
Sbjct: 264 ALVFGSNTVVY 274
Score = 92 (37.4 bits), Expect = 4.7e-26, Sum P(4) = 4.7e-26
Identities = 58/234 (24%), Positives = 99/234 (42%)
Query: 342 LERYVNLGPIVDFCV----------VDLERQGQG-QVVTCSGAYKDGSLRIVRNGIGINE 390
L+R N+GP+ CV VD +R+ +VT SG K+G+L + + +
Sbjct: 443 LDRLRNVGPVKSMCVGRPNYMSNDLVDAKRRDPVFDLVTASGHGKNGALCVHQRSLRPEI 502
Query: 391 QASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQT 450
S L+G + +W++ ++ +L+VS + T IL L F + T
Sbjct: 503 ITSSLLEGAEQLWAVGRKENESHK-YLIVSRVRSTLIL--ELGEELVELEEQLFVTGEPT 559
Query: 451 LFCHDAIYNQL-VQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGH 509
+ + L VQVTS + LV T + E + V A+ V L T G
Sbjct: 560 VAAGELSQGALAVQVTSTCIALV--TDGQQMQEVHIDSNFPVIQASIVDPYVALLTQNGR 617
Query: 510 LVYLEIGDGILTEVKHAQL-EYEISCLDI---NPIGENPSYSQIAAVGMWTDIS 559
L+ E+ + E + QL E +IS + +N +Q+ ++ ++ D S
Sbjct: 618 LLLYEL----VME-PYVQLREVDISATSFATWHATAQN--LTQLTSISIYADAS 664
Score = 70 (29.7 bits), Expect = 4.2e-11, Sum P(4) = 4.2e-11
Identities = 31/110 (28%), Positives = 56/110 (50%)
Query: 740 ESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPT 799
+SE+ R+ D F++ YP+ E G +I + +S+VY V + +P+ P+
Sbjct: 999 KSELRIARMHPD--FDYEMPYPVKKIEVGRTIHHVRYLMNSDVYAVVSS---IPK---PS 1050
Query: 800 KGRILVFIVEDGKLQLIAEKETKGAV-----YSLNAFNGKLLAAI-NQKI 843
+I V ++ D K + I EK+ + Y+LN F+ + AA+ N +I
Sbjct: 1051 N-KIWV-VMNDDKQEEIHEKDENFVLPAPPKYTLNLFSSQDWAAVPNTEI 1098
Score = 66 (28.3 bits), Expect = 4.7e-26, Sum P(4) = 4.7e-26
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 289 VTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLE 343
V L+ + ETSIA +++ +++GS GDSQL++ L + V+ L+
Sbjct: 344 VKSLEFSKVYETSIAYSLTVCAPGHLFVGSRLGDSQLLEYTLLKTTRDCAVKRLK 398
Score = 49 (22.3 bits), Expect = 2.6e-24, Sum P(4) = 2.6e-24
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 304 STISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLE 343
ST Y+++ + +GS GD L L L + G V+ LE
Sbjct: 311 STSVYMEDGRIAVGSRDGD--LFLLRLMTSSGGGTVKSLE 348
Score = 43 (20.2 bits), Expect = 1.9e-08, Sum P(4) = 1.9e-08
Identities = 27/107 (25%), Positives = 48/107 (44%)
Query: 648 DRPTVIYSSNK-KLLYSNVNLKEVSHMCPFNS---AAFPDSLAI--AKEGELT-IGTIDD 700
D+PT S+ K K+L+ V+ +C N + I K+ +L I +D
Sbjct: 1158 DQPT---SNRKIKVLFDKEQKGPVTGLCAINGLLLCGMGQKVFIWQFKDNDLMGISFLDM 1214
Query: 701 ---IQKLH-IRSIPLGEHPRR----ICHQEQSRTFAICSLKNQSCAE 739
+ +LH +R+I + R I QE ++ +I S ++ CA+
Sbjct: 1215 HYYVYQLHSLRTIAIACDARESMSLIRFQEDNKAMSIASRDDRKCAQ 1261
Score = 40 (19.1 bits), Expect = 3.8e-08, Sum P(4) = 3.8e-08
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 1064 DEISKTMNVSVEELCKRVEE 1083
DE ++ +N +++LC+RV E
Sbjct: 837 DE-AEQLNTEMKQLCERVLE 855
Score = 39 (18.8 bits), Expect = 4.8e-08, Sum P(4) = 4.8e-08
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 602 DGHLLNFLLNMKTGELT 618
DG + FLL+ +TG +T
Sbjct: 1271 DGAHVGFLLSDETGNIT 1287
>ZFIN|ZDB-GENE-040709-2 [details] [associations]
symbol:cpsf1 "cleavage and polyadenylation specific
factor 1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IMP] [GO:0060216
"definitive hemopoiesis" evidence=IMP] InterPro:IPR004871
Pfam:PF03178 ZFIN:ZDB-GENE-040709-2 GO:GO:0005634 GO:GO:0006378
GO:GO:0003676 GeneTree:ENSGT00550000075040 GO:GO:0060216
EMBL:CU467825 IPI:IPI00932321 Ensembl:ENSDART00000110017
ArrayExpress:F1QCJ8 Bgee:F1QCJ8 Uniprot:F1QCJ8
Length = 1451
Score = 226 (84.6 bits), Expect = 2.3e-25, Sum P(7) = 2.3e-25
Identities = 90/326 (27%), Positives = 157/326 (48%)
Query: 783 YYCVGTAYVLPEENEPTKGRILVFIV-----EDG------KLQLIAEKETKGAVYSLNAF 831
Y +GT + EE +GRIL+ V E G K +++ EKE KG V +L
Sbjct: 1128 YVALGTCLMQGEE-VTCRGRILILDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHC 1186
Query: 832 NGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISL 891
+G L++AI QKI L W L+D+ + + +I +Y + +FI+ D+MKSISL
Sbjct: 1187 SGFLVSAIGQKIFL--WSLKDNDLTGM-AFIDTQLYIHQMY--SIKNFILAADVMKSISL 1241
Query: 892 LIYKHEEGAIEERARDYNANWMSAVEILDDDIYLG---AENNFNLFTVRKNSEGATDEER 948
L Y+ E + +RD + ++E + D+ LG ++ + NL E
Sbjct: 1242 LRYQPESKTLSLVSRDAKPLEVYSIEFMVDNNQLGFLVSDRDKNLMVYMYLPEAKESFGG 1301
Query: 949 GRLEVVGEYHLGEFVNRF-R---HGSLVMRLPDSDVGQIPTVI-FGTVNGVIGVIASLPH 1003
RL ++++G VN F R G+L + + F T++G +G++ +
Sbjct: 1302 MRLLRRADFNVGSHVNAFWRMPCRGTLDTANKKALTWDNKHITWFATLDGGVGLLLPMQE 1361
Query: 1004 EQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVD--AKNFLDGDLIESFLDLSRT 1061
+ Y L LQ L ++ GLN + +R + +++T+ KN LDG+L+ +L LS
Sbjct: 1362 KTYRRLLMLQNALTTMLPHHAGLNPKAFRMLHCDRRTLQNAVKNILDGELLNKYLYLSTM 1421
Query: 1062 RMDEISKTMNVSVEELCKRVEELTRL 1087
E++K + + + + + E+ R+
Sbjct: 1422 ERSELAKKIGTTPDIILDDLLEIERV 1447
Score = 94 (38.1 bits), Expect = 2.3e-25, Sum P(7) = 2.3e-25
Identities = 23/88 (26%), Positives = 48/88 (54%)
Query: 161 LQVLDIKFLYGCAKPTIVVLYQDNKD-----ARHVKTYEVALKDKDFVEG--P--WSQNN 211
L ++D+KFL+G +PT+++L++ N+ A T + + ++ P WS +N
Sbjct: 201 LNIIDMKFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNIMQKVHPVIWSLSN 260
Query: 212 LDNGADLLIPVPPPLCGVLIIGEETIVY 239
L + ++ VP P+ GV++ +++Y
Sbjct: 261 LPFDCNQVMAVPKPIGGVVVFAVNSLLY 288
Score = 70 (29.7 bits), Expect = 2.3e-25, Sum P(7) = 2.3e-25
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 366 QVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDP 412
+VV CSG K+G+L +++ I + EL G MW++ + P
Sbjct: 501 EVVVCSGYGKNGALSVLQKSIRPQVVTTFELPGCHDMWTVIYCEEKP 547
Score = 65 (27.9 bits), Expect = 2.3e-25, Sum P(7) = 2.3e-25
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 10 AHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIH 43
AH PT V + NF S QE NL++A +++ ++
Sbjct: 8 AHPPTAVEFAVYCNFISSQEKNLVVAGTSQLYVY 41
Score = 61 (26.5 bits), Expect = 2.3e-25, Sum P(7) = 2.3e-25
Identities = 18/79 (22%), Positives = 32/79 (40%)
Query: 670 VSHMCPFNSAAFPDS-LAIAKEGELTIGTIDDIQKLH----IRSIPLGEHPRRICHQEQS 724
+ PF++ P L K+GEL I + +R IPL + + +S
Sbjct: 980 IESFSPFHNINCPKGFLYFNKQGELRISVLPTYLSYDAPWPVRKIPLRCTVHYVSYHVES 1039
Query: 725 RTFAICSLKNQSCAEESEM 743
+ +A+C+ + C M
Sbjct: 1040 KVYAVCTSVKEPCTRIPRM 1058
Score = 55 (24.4 bits), Expect = 2.3e-25, Sum P(7) = 2.3e-25
Identities = 20/99 (20%), Positives = 46/99 (46%)
Query: 50 LQPMLDVPIYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSD 109
L+ + ++G + ++ + G +D L ++ + K V+++D + +L T ++ +
Sbjct: 66 LEQVASFSLFGNVMSMASVQLVGTNRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEE 125
Query: 110 RIGRP--TDNGQIGII--DPDCRLIGLHLYDGLFKVIPF 144
R N I ++ DP+ R + +Y V+PF
Sbjct: 126 PELRDGFVQNVHIPMVRVDPENRCAVMLVYGTCLVVLPF 164
Score = 46 (21.3 bits), Expect = 4.4e-05, Sum P(6) = 4.4e-05
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 602 DGHLLNFLLNMKTGELTDRKKVSLGTQP 629
DG LLN L + T E ++ K +GT P
Sbjct: 1408 DGELLNKYLYLSTMERSELAK-KIGTTP 1434
Score = 40 (19.1 bits), Expect = 0.00015, Sum P(6) = 0.00015
Identities = 9/41 (21%), Positives = 23/41 (56%)
Query: 818 EKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTREL 858
E+ ++G+ + +A GK + Q+ + ++R++G E+
Sbjct: 764 EESSRGSAAASSAHTGKESGSGRQEPSHWCLLVRENGVMEI 804
Score = 38 (18.4 bits), Expect = 2.3e-25, Sum P(7) = 2.3e-25
Identities = 14/68 (20%), Positives = 29/68 (42%)
Query: 281 VITHEKEKVTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQLI----KLNLQPDAKG 336
+IT V + + + + + ++ +++GS G+S L+ KL P +G
Sbjct: 349 LITDGMRSVRAFHFDKAAASVLTTCMMTMEPGYLFLGSRLGNSLLLRYTEKLQETPMEEG 408
Query: 337 SYVEVLER 344
E E+
Sbjct: 409 KENEEKEK 416
>UNIPROTKB|Q10570 [details] [associations]
symbol:CPSF1 "Cleavage and polyadenylation specificity
factor subunit 1" species:9606 "Homo sapiens" [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0006379 "mRNA cleavage"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IDA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0006406 "mRNA
export from nucleus" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR004871 Pfam:PF03178
Reactome:REACT_1675 GO:GO:0006378 GO:GO:0003730 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG5161 KO:K14401
GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
OMA:NIGDNRY CTD:29894 HOGENOM:HOG000007904 HOVERGEN:HBG051105
OrthoDB:EOG4BCDM3 EMBL:U37012 EMBL:BC017232 IPI:IPI00026219
RefSeq:NP_037423.2 UniGene:Hs.493202 ProteinModelPortal:Q10570
DIP:DIP-32694N IntAct:Q10570 MINT:MINT-1601544 STRING:Q10570
PhosphoSite:Q10570 DMDM:23503048 PaxDb:Q10570 PeptideAtlas:Q10570
PRIDE:Q10570 DNASU:29894 Ensembl:ENST00000349769
Ensembl:ENST00000568627 GeneID:29894 KEGG:hsa:29894 UCSC:uc003zcj.3
GeneCards:GC08M145618 HGNC:HGNC:2324 MIM:606027 neXtProt:NX_Q10570
PharmGKB:PA26841 InParanoid:Q10570 PhylomeDB:Q10570 ChiTaRS:CPSF1
GenomeRNAi:29894 NextBio:52452 ArrayExpress:Q10570 Bgee:Q10570
CleanEx:HS_CPSF1 Genevestigator:Q10570 GermOnline:ENSG00000071894
Uniprot:Q10570
Length = 1443
Score = 234 (87.4 bits), Expect = 3.0e-25, Sum P(7) = 3.0e-25
Identities = 101/376 (26%), Positives = 171/376 (45%)
Query: 740 ESEMHFVRLLDDQTFEFI--STYPLDTFEYGCSILSCSFSDDSNV-----YYCVGTAYVL 792
+ E ++L+ ++E I + L +E+ + + S + V Y GT +
Sbjct: 1070 QQEAFSIQLISPVSWEAIPNARIELQEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQ 1129
Query: 793 PEENEPTKGRILVFIV-----EDG------KLQLIAEKETKGAVYSLNAFNGKLLAAINQ 841
EE +GRIL+ V E G K +++ EKE KG V +L NG L++AI Q
Sbjct: 1130 GEE-VTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQ 1188
Query: 842 KIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAI 901
KI L W LR EL + + + +FI+ D+MKSISLL Y+ E +
Sbjct: 1189 KIFL--WSLR---ASELTGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTL 1243
Query: 902 EERARDYNANWMSAVEILDDDIYLG---AENNFNLFTVRKNSEGATDEERGRLEVVGEYH 958
+RD + +V+ + D+ LG ++ + NL E RL ++H
Sbjct: 1244 SLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFH 1303
Query: 959 LGEFVNRF-R---HGSLVMRLPDSDVGQIPTVI-FGTVNGVIGVIASLPHEQYLFLEKLQ 1013
+G VN F R G+ S V + + F T++G IG++ + + Y L LQ
Sbjct: 1304 VGAHVNTFWRTPCRGATEGLSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQ 1363
Query: 1014 TNLRKVIKGVGGLNHEQWRSFNNEKKTVD--AKNFLDGDLIESFLDLSRTRMDEISKTMN 1071
L ++ GLN +R + +++T+ +N LDG+L+ +L LS E++K +
Sbjct: 1364 NALTTMLPHHAGLNPRAFRMLHVDRRTLQNAVRNVLDGELLNRYLYLSTMERSELAKKIG 1423
Query: 1072 VSVEELCKRVEELTRL 1087
+ + + + E R+
Sbjct: 1424 TTPDIILDDLLETDRV 1439
Score = 81 (33.6 bits), Expect = 3.0e-25, Sum P(7) = 3.0e-25
Identities = 21/88 (23%), Positives = 44/88 (50%)
Query: 161 LQVLDIKFLYGCAKPTIVVLYQDNKD-----ARHVKTYEVALKDKDFVEG--P--WSQNN 211
L ++D++FL+G +PT+++L++ N+ A T + + + P WS +
Sbjct: 201 LNIIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNITQKVHPVIWSLTS 260
Query: 212 LDNGADLLIPVPPPLCGVLIIGEETIVY 239
L + VP P+ GV++ +++Y
Sbjct: 261 LPFDCTQALAVPKPIGGVVVFAVNSLLY 288
Score = 74 (31.1 bits), Expect = 3.0e-25, Sum P(7) = 3.0e-25
Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 340 EVLERYVNLGPIVDFCVVD---LERQGQG------QVVTCSGAYKDGSLRIVRNGIGINE 390
EV + +N+GP + V + L + Q ++V CSG K+G+L +++ I
Sbjct: 464 EVCDSILNIGPCANAAVGEPAFLSEEFQNSPEPDLEIVVCSGHGKNGALSVLQKSIRPQV 523
Query: 391 QASVELQGIKGMWSL 405
+ EL G MW++
Sbjct: 524 VTTFELPGCYDMWTV 538
Score = 60 (26.2 bits), Expect = 3.0e-25, Sum P(7) = 3.0e-25
Identities = 19/79 (24%), Positives = 32/79 (40%)
Query: 670 VSHMCPFNSAAFPDS-LAIAKEGELTIGTIDDIQKLH----IRSIPLGEHPRRICHQEQS 724
V PF++ P L ++GEL I + +R IPL + + +S
Sbjct: 972 VDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRCTAHYVAYHVES 1031
Query: 725 RTFAICSLKNQSCAEESEM 743
+ +A+ + N CA M
Sbjct: 1032 KVYAVATSTNTPCARIPRM 1050
Score = 59 (25.8 bits), Expect = 3.0e-25, Sum P(7) = 3.0e-25
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 10 AHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLL 45
AH PT + S NF + E NL++A +++ ++ L
Sbjct: 8 AHPPTGLEFSMYCNFFNNSERNLVVAGTSQLYVYRL 43
Score = 58 (25.5 bits), Expect = 3.0e-25, Sum P(7) = 3.0e-25
Identities = 19/99 (19%), Positives = 46/99 (46%)
Query: 59 YGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMG-----DVSDRIGR 113
+G + ++ + G +D L ++ + K V+++D + +L T ++ ++ D +
Sbjct: 75 FGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPELRDGFVQ 134
Query: 114 PTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKE 152
++ + DPD R + +Y V+PF + +E
Sbjct: 135 NVHTPRVRV-DPDGRCAAMLVYGTRLVVLPFRRESLAEE 172
Score = 46 (21.3 bits), Expect = 0.00033, Sum P(6) = 0.00033
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 602 DGHLLNFLLNMKTGELTDRKKVSLGTQP 629
DG LLN L + T E ++ K +GT P
Sbjct: 1400 DGELLNRYLYLSTMERSELAK-KIGTTP 1426
Score = 41 (19.5 bits), Expect = 3.0e-25, Sum P(7) = 3.0e-25
Identities = 9/47 (19%), Positives = 23/47 (48%)
Query: 281 VITHEKEKVTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQLIK 327
+IT V + + + +++ ++ +++GS G+S L+K
Sbjct: 349 LITDGMRSVRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLK 395
>UNIPROTKB|F5GYG8 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9606
"Homo sapiens" [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] GO:GO:0016055 GO:GO:0003684 EMBL:AP003108
HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI01012348
ProteinModelPortal:F5GYG8 SMR:F5GYG8 Ensembl:ENST00000543627
ArrayExpress:F5GYG8 Bgee:F5GYG8 Uniprot:F5GYG8
Length = 109
Score = 292 (107.8 bits), Expect = 1.7e-24, P = 1.7e-24
Identities = 56/106 (52%), Positives = 81/106 (76%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+IA
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIA 62
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDV 107
+ELFRP GE++D LFI T +Y C+L++ ES ++ITRA G+V
Sbjct: 63 VMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNV 108
>MGI|MGI:2679722 [details] [associations]
symbol:Cpsf1 "cleavage and polyadenylation specific factor
1" species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISO] [GO:0006378 "mRNA
polyadenylation" evidence=ISO] [GO:0006379 "mRNA cleavage"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR004871 Pfam:PF03178 MGI:MGI:2679722 GO:GO:0006378
GO:GO:0003730 eggNOG:COG5161 KO:K14401 GO:GO:0005847 GO:GO:0006379
GeneTree:ENSGT00550000075040 OMA:NIGDNRY CTD:29894
HOGENOM:HOG000007904 HOVERGEN:HBG051105 OrthoDB:EOG4BCDM3
EMBL:AF322193 EMBL:BC056388 IPI:IPI00110363 RefSeq:NP_001157645.1
RefSeq:NP_444423.1 UniGene:Mm.45141 ProteinModelPortal:Q9EPU4
STRING:Q9EPU4 PhosphoSite:Q9EPU4 PaxDb:Q9EPU4 PRIDE:Q9EPU4
Ensembl:ENSMUST00000071898 GeneID:94230 KEGG:mmu:94230
UCSC:uc007wky.2 InParanoid:Q9EPU4 NextBio:352239 Bgee:Q9EPU4
CleanEx:MM_CPSF1 Genevestigator:Q9EPU4
GermOnline:ENSMUSG00000034022 Uniprot:Q9EPU4
Length = 1441
Score = 230 (86.0 bits), Expect = 2.0e-24, Sum P(7) = 2.0e-24
Identities = 100/376 (26%), Positives = 171/376 (45%)
Query: 740 ESEMHFVRLLDDQTFEFI--STYPLDTFEYGCSILSCSFSDDSNV-----YYCVGTAYVL 792
+ E ++L+ ++E I + L+ +E+ + + S + V Y GT +
Sbjct: 1068 QQEAFSIQLISPVSWEAIPNARIELEEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQ 1127
Query: 793 PEENEPTKGRILVFIV-----EDG------KLQLIAEKETKGAVYSLNAFNGKLLAAINQ 841
EE +GRIL+ V E G K +++ EKE KG V +L NG L++AI Q
Sbjct: 1128 GEE-VTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQ 1186
Query: 842 KIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAI 901
KI L W LR EL + + + +FI+ D+MKSISLL Y+ E +
Sbjct: 1187 KIFL--WSLR---ASELTGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTL 1241
Query: 902 EERARDYNANWMSAVEILDDDIYLG---AENNFNLFTVRKNSEGATDEERGRLEVVGEYH 958
+RD + +V+ + D+ LG ++ + NL E RL ++H
Sbjct: 1242 SLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFH 1301
Query: 959 LGEFVNRF-R---HGSLVMRLPDSDVGQIPTVI-FGTVNGVIGVIASLPHEQYLFLEKLQ 1013
+G VN F R G+ S V + + F T++G IG++ + + Y L LQ
Sbjct: 1302 VGAHVNTFWRTPCRGAAEGPSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQ 1361
Query: 1014 TNLRKVIKGVGGLNHEQWRSFNNEKKTVD--AKNFLDGDLIESFLDLSRTRMDEISKTMN 1071
L ++ GLN +R + +++ + +N LDG+L+ +L LS E++K +
Sbjct: 1362 NALTTMLPHHAGLNPRAFRMLHVDRRILQNAVRNVLDGELLNRYLYLSTMERSELAKKIG 1421
Query: 1072 VSVEELCKRVEELTRL 1087
+ + + + E R+
Sbjct: 1422 TTPDIILDDLLETDRV 1437
Score = 82 (33.9 bits), Expect = 2.0e-24, Sum P(7) = 2.0e-24
Identities = 22/88 (25%), Positives = 44/88 (50%)
Query: 161 LQVLDIKFLYGCAKPTIVVLYQDNKD-----ARHVKTYEVALKDKDFVEG--P--WSQNN 211
L ++D++FL+G +PT+++L++ N+ A T + + + P WS +
Sbjct: 201 LNIIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNITQKVHPVIWSLTS 260
Query: 212 LDNGADLLIPVPPPLCGVLIIGEETIVY 239
L + VP P+ GV+I +++Y
Sbjct: 261 LPFDCTQALAVPKPIGGVVIFAVNSLLY 288
Score = 74 (31.1 bits), Expect = 2.0e-24, Sum P(7) = 2.0e-24
Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 340 EVLERYVNLGPIVDFCVVD---LERQGQG------QVVTCSGAYKDGSLRIVRNGIGINE 390
EV + +N+GP + V + L + Q ++V CSG K+G+L +++ I
Sbjct: 463 EVCDSMLNIGPCANAAVGEPAFLSEEFQNSPEPDLEIVVCSGYGKNGALSVLQKSIRPQV 522
Query: 391 QASVELQGIKGMWSL 405
+ EL G MW++
Sbjct: 523 VTTFELPGCYDMWTV 537
Score = 60 (26.2 bits), Expect = 2.0e-24, Sum P(7) = 2.0e-24
Identities = 20/108 (18%), Positives = 49/108 (45%)
Query: 50 LQPMLDVPIYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMG---- 105
L+ + +G + ++ + G +D L ++ + K V+++D + +L T ++
Sbjct: 66 LELVASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEE 125
Query: 106 -DVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKE 152
++ D + ++ + DPD R + +Y V+PF + +E
Sbjct: 126 PELRDGFVQNVHTPRVRV-DPDGRCAAMLIYGTRLVVLPFRRESLAEE 172
Score = 56 (24.8 bits), Expect = 2.0e-24, Sum P(7) = 2.0e-24
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 10 AHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLL 45
AH PT + + NF + E NL++A +++ ++ L
Sbjct: 8 AHPPTGLEFTMYCNFFNNSERNLVVAGTSQLYVYRL 43
Score = 55 (24.4 bits), Expect = 2.0e-24, Sum P(7) = 2.0e-24
Identities = 17/79 (21%), Positives = 31/79 (39%)
Query: 670 VSHMCPFNSAAFPDS-LAIAKEGELTIGTIDDIQKLH----IRSIPLGEHPRRICHQEQS 724
+ PF++ P L ++GEL I + +R IPL + + +S
Sbjct: 970 IDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRCTAHYVAYHVES 1029
Query: 725 RTFAICSLKNQSCAEESEM 743
+ +A+ + N C M
Sbjct: 1030 KVYAVATSTNTPCTRIPRM 1048
Score = 46 (21.3 bits), Expect = 0.00026, Sum P(6) = 0.00026
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 602 DGHLLNFLLNMKTGELTDRKKVSLGTQP 629
DG LLN L + T E ++ K +GT P
Sbjct: 1398 DGELLNRYLYLSTMERSELAK-KIGTTP 1424
Score = 42 (19.8 bits), Expect = 2.0e-24, Sum P(7) = 2.0e-24
Identities = 13/66 (19%), Positives = 29/66 (43%)
Query: 281 VITHEKEKVTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLN--LQPDAKGSY 338
+IT V + + + +++ ++ +++GS G+S L+K LQ S
Sbjct: 349 LITDGMRSVRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASSV 408
Query: 339 VEVLER 344
E ++
Sbjct: 409 REAADK 414
>UNIPROTKB|Q10569 [details] [associations]
symbol:CPSF1 "Cleavage and polyadenylation specificity
factor subunit 1" species:9913 "Bos taurus" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA] InterPro:IPR004871 Pfam:PF03178
GO:GO:0006378 GO:GO:0003730 eggNOG:COG5161 KO:K14401 GO:GO:0005847
GO:GO:0006379 GeneTree:ENSGT00550000075040 OMA:NIGDNRY EMBL:X83097
IPI:IPI00713487 PIR:S57335 RefSeq:NP_777145.1 UniGene:Bt.4911
STRING:Q10569 PRIDE:Q10569 Ensembl:ENSBTAT00000011004 GeneID:282703
KEGG:bta:282703 CTD:29894 HOGENOM:HOG000007904 HOVERGEN:HBG051105
InParanoid:Q10569 OrthoDB:EOG4BCDM3 NextBio:20806363
ArrayExpress:Q10569 Uniprot:Q10569
Length = 1444
Score = 230 (86.0 bits), Expect = 7.9e-24, Sum P(7) = 7.9e-24
Identities = 100/376 (26%), Positives = 171/376 (45%)
Query: 740 ESEMHFVRLLDDQTFEFI--STYPLDTFEYGCSILSCSFSDDSNV-----YYCVGTAYVL 792
+ E ++L+ ++E I + L+ +E+ + + S + V Y GT +
Sbjct: 1071 QQEAFCIQLISPVSWEAIPNARIELEEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQ 1130
Query: 793 PEENEPTKGRILVFIV-----EDG------KLQLIAEKETKGAVYSLNAFNGKLLAAINQ 841
EE +GRIL+ V E G K +++ EKE KG V +L NG L++AI Q
Sbjct: 1131 GEE-VTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQ 1189
Query: 842 KIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAI 901
KI L W LR EL + + + +FI+ D+MKSISLL Y+ E +
Sbjct: 1190 KIFL--WSLR---ASELTGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTL 1244
Query: 902 EERARDYNANWMSAVEILDDDIYLG---AENNFNLFTVRKNSEGATDEERGRLEVVGEYH 958
+RD + +V+ + D+ LG ++ + NL E RL ++H
Sbjct: 1245 SLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFH 1304
Query: 959 LGEFVNRF-R---HGSLVMRLPDSDVGQIPTVI-FGTVNGVIGVIASLPHEQYLFLEKLQ 1013
+G VN F R G+ S V + + F T++G IG++ + + Y L LQ
Sbjct: 1305 VGAHVNTFWRTPCRGAAEGPSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQ 1364
Query: 1014 TNLRKVIKGVGGLNHEQWRSFNNEKKTVD--AKNFLDGDLIESFLDLSRTRMDEISKTMN 1071
L ++ GLN +R + +++ + +N LDG+L+ +L LS E++K +
Sbjct: 1365 NALTTMLPHHAGLNPRAFRMLHVDRRVLQNAVRNVLDGELLNRYLYLSTMERGELAKKIG 1424
Query: 1072 VSVEELCKRVEELTRL 1087
+ + + + E R+
Sbjct: 1425 TTPDIILDDLLETDRV 1440
Score = 81 (33.6 bits), Expect = 7.9e-24, Sum P(7) = 7.9e-24
Identities = 22/88 (25%), Positives = 44/88 (50%)
Query: 161 LQVLDIKFLYGCAKPTIVVLYQDNKD-----ARHVKTYEVALKDKDFVEG--P--WSQNN 211
L ++D++FL+G +PT+++L++ N+ A T + + + P WS +
Sbjct: 204 LNIVDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNITQKVHPVIWSLTS 263
Query: 212 LDNGADLLIPVPPPLCGVLIIGEETIVY 239
L + VP P+ GV+I +++Y
Sbjct: 264 LPFDCTQALAVPKPIGGVVIFAVNSLLY 291
Score = 71 (30.1 bits), Expect = 7.9e-24, Sum P(7) = 7.9e-24
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 340 EVLERYVNLGPIVDFCVVD---LERQGQG------QVVTCSGAYKDGSLRIVRNGIGINE 390
EV + +N+GP + + + L + Q ++V CSG K+G+L +++ I
Sbjct: 466 EVCDSILNIGPCANAAMGEPAFLSEEFQNSPEPDLEIVVCSGYGKNGALSVLQKSIRPQV 525
Query: 391 QASVELQGIKGMWSL 405
+ EL G MW++
Sbjct: 526 VTTFELPGCYDMWTV 540
Score = 60 (26.2 bits), Expect = 7.9e-24, Sum P(7) = 7.9e-24
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 10 AHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQP 52
AH PT + S NF + E NL++A +++ ++ L P
Sbjct: 8 AHPPTGLEFSMYCNFFNNSERNLVVAGTSQLYVYRLNRDSEAP 50
Score = 60 (26.2 bits), Expect = 7.9e-24, Sum P(7) = 7.9e-24
Identities = 20/108 (18%), Positives = 49/108 (45%)
Query: 50 LQPMLDVPIYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMG---- 105
L+ + +G + ++ + G +D L ++ + K V+++D + +L T ++
Sbjct: 69 LELVASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEE 128
Query: 106 -DVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKE 152
++ D + ++ + DPD R + +Y V+PF + +E
Sbjct: 129 PELRDGFVQNVHTPRVRV-DPDGRCAAMLIYGTRLVVLPFRRESLAEE 175
Score = 50 (22.7 bits), Expect = 7.9e-24, Sum P(7) = 7.9e-24
Identities = 16/79 (20%), Positives = 31/79 (39%)
Query: 670 VSHMCPFNSAAFPDS-LAIAKEGELTIGTIDDIQKLH----IRSIPLGEHPRRICHQEQS 724
+ PF++ P L ++GEL I + +R IPL + + +S
Sbjct: 973 IDSFAPFHNINCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRCTAHYVAYHVES 1032
Query: 725 RTFAICSLKNQSCAEESEM 743
+ +A+ + + C M
Sbjct: 1033 KVYAVATSTSTPCTRVPRM 1051
Score = 41 (19.5 bits), Expect = 7.9e-24, Sum P(7) = 7.9e-24
Identities = 9/47 (19%), Positives = 23/47 (48%)
Query: 281 VITHEKEKVTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQLIK 327
+IT V + + + +++ ++ +++GS G+S L+K
Sbjct: 352 LITDGMRSVRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLK 398
>DICTYBASE|DDB_G0281585 [details] [associations]
symbol:cpsf1 "cleavage and polyadenylation
specificity factor 160 kDa subunit" species:44689 "Dictyostelium
discoideum" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=ISS] [GO:0006378 "mRNA polyadenylation" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] InterPro:IPR004871 Pfam:PF03178
dictyBase:DDB_G0281585 GenomeReviews:CM000152_GR GO:GO:0006378
EMBL:AAFI02000042 GO:GO:0003730 eggNOG:COG5161 KO:K14401
GO:GO:0005847 GO:GO:0006379 RefSeq:XP_640515.1
EnsemblProtists:DDB0233702 GeneID:8623125 KEGG:ddi:DDB_G0281585
InParanoid:Q54TS6 OMA:TSATIQD Uniprot:Q54TS6
Length = 1628
Score = 228 (85.3 bits), Expect = 1.4e-23, Sum P(7) = 1.4e-23
Identities = 99/375 (26%), Positives = 176/375 (46%)
Query: 746 VRLLD---DQTFEFISTYPLDTFE--YGCSILSCSFSDDSNV-----YYCVGTAYVLPEE 795
++L+D D ++FI ++ L E I+S F++ + + +GTA+ E+
Sbjct: 1272 IKLIDPTIDWNWKFIDSFSLQDRETVLAMKIVSLKFTEPDGITRARPFLVIGTAFTFGED 1331
Query: 796 NEPTKGRILVF-IVE-----------DGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKI 843
+ KGR+LVF IV + +L L+ EKE KG V +L++ NG LL I K+
Sbjct: 1332 TQ-CKGRVLVFEIVSHKTQFESEELGEKRLNLLYEKEQKGPVTALSSVNGLLLMTIGPKL 1390
Query: 844 QLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEE 903
+ ++ T L + + I + T ++IV+GD+ KS+ L +K + +
Sbjct: 1391 TVNQFY-----TGSLVTLSFYDAQIYICSICTIKNYIVIGDMYKSVYFLQWKDNK-TLNL 1444
Query: 904 RARDYNA-NWMSAVEILDDD----IYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYH 958
++DY A N S I++ + + N LF+ + + + E+ G
Sbjct: 1445 LSKDYQALNIFSTEFIVNQKTLSILVSDLDKNILLFSFEPQDPSSRSGQINQ-EINGN-- 1501
Query: 959 LGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRK 1018
N+ + RLP + Q+ VIFGT++G + V+ L + YL +Q+ L
Sbjct: 1502 -----NKNDN-----RLPKKE--QL--VIFGTLDGGLNVLRPLDEKIYLLFYHIQSKLY- 1546
Query: 1019 VIKGVGGLNHEQWRSFNNEKKTVD---------AKNFLDGDLIESFLDLSRTRMDEISKT 1069
+ GLN +Q+RSF + + K LDGDLI FL LS++ IS +
Sbjct: 1547 YLPQTAGLNPKQYRSFKSFSQNFHFSPSTFHQLPKFILDGDLISKFLSLSQSEKRLISNS 1606
Query: 1070 MNVSVEELCKRVEEL 1084
+N + +E+ + ++++
Sbjct: 1607 INSTSDEIIESLKDV 1621
Score = 88 (36.0 bits), Expect = 1.4e-23, Sum P(7) = 1.4e-23
Identities = 32/106 (30%), Positives = 53/106 (50%)
Query: 146 NKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLYQDNKD--AR-HVKTYE-----VAL 197
N Q KE NI +E ++ D FL+G +PTI+ L++ + +R VK + ++L
Sbjct: 273 NNNQDKEKKNIEIENVK--DFCFLHGYYEPTILFLHEPIQTWTSRIAVKKFTCQMTAISL 330
Query: 198 ----KDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVY 239
K F+ W+ +N ++L+ VP PL G L+I + Y
Sbjct: 331 NLLTKAGSFI---WNVSNFPYNCEMLVSVPEPLGGALVITANIMFY 373
Score = 77 (32.2 bits), Expect = 1.4e-23, Sum P(7) = 1.4e-23
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 366 QVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSL 405
++VTCSG K+GS+ +++N I + EL GI +W++
Sbjct: 618 ELVTCSGYGKNGSISVLQNNIKPELVMAFELPGILNVWTV 657
Score = 58 (25.5 bits), Expect = 1.4e-23, Sum P(7) = 1.4e-23
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 289 VTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQLIK 327
V + + G + + S I L N ++++GS GDS L++
Sbjct: 449 VQRIHVSKAGGSVLTSCICVLSNNLIFLGSRLGDSLLLQ 487
Score = 53 (23.7 bits), Expect = 1.4e-23, Sum P(7) = 1.4e-23
Identities = 26/105 (24%), Positives = 48/105 (45%)
Query: 45 LTPQGLQPMLDVPIYGRIATLELFR-PHGEAQDFLFIATERYKFCVLQWDAESSELITRA 103
L P L+ +++ ++G I ++ R P+ E +D L + K VL +D++ + R+
Sbjct: 83 LKPS-LELIIEKKLFGNIESMASVRYPNSE-RDSLILTFRDAKISVLDYDSDLLDFEIRS 140
Query: 104 MGDVS-DRI--GRPT-DNGQIGIIDPDCRLIGLHLYDGLFKVIPF 144
+ D GR + + +D R + LYD V+PF
Sbjct: 141 LHYFEKDEFKGGRNHFKHPPLLKVDTQQRCAVMLLYDRNLAVLPF 185
Score = 48 (22.0 bits), Expect = 1.4e-23, Sum P(7) = 1.4e-23
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 13 PTNVTHSCVGNFTSPQELNLIIAKCTRIEIH 43
PT V N + +NL++AK ++I+
Sbjct: 14 PTGVEQCIKANLINDDSINLVLAKTNVLQIY 44
Score = 43 (20.2 bits), Expect = 1.4e-23, Sum P(7) = 1.4e-23
Identities = 10/48 (20%), Positives = 22/48 (45%)
Query: 502 LLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQI 549
+ T G + +Y + +V + EY+I ++ N + +N Q+
Sbjct: 940 IYTTNGSYEIYRLTSQECIFKVSDIKFEYDILGINTN-VSQNQILEQV 986
Score = 43 (20.2 bits), Expect = 1.8e-18, Sum P(6) = 1.8e-18
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 383 RNGIGINEQASVELQGIKGMWSLRSSTDD 411
R G+ +NE AS++ I G DD
Sbjct: 379 RYGLAVNEYASIDTSTIIGSQPFDFPIDD 407
Score = 39 (18.8 bits), Expect = 7.9e-17, Sum P(5) = 7.9e-17
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 11 HKPTNV-THSCVGNFTSPQELNLIIAKCTRIEIHLLTPQG 49
++PT + H + +TS + + T I ++LLT G
Sbjct: 298 YEPTILFLHEPIQTWTSRIAVKKFTCQMTAISLNLLTKAG 337
Score = 39 (18.8 bits), Expect = 0.00025, Sum P(6) = 0.00025
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 1029 EQWRSFNNEKKTVD-AKNFLDGD 1050
+Q + N +KK D ++ FLD D
Sbjct: 863 QQQQPSNEKKKKKDKSRGFLDSD 885
>TAIR|locus:2153122 [details] [associations]
symbol:CPSF160 "cleavage and polyadenylation specificity
factor 160" species:3702 "Arabidopsis thaliana" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0006379 "mRNA cleavage" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=RCA] [GO:0009909 "regulation
of flower development" evidence=RCA] [GO:0016570 "histone
modification" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] InterPro:IPR004871 Pfam:PF03178 GO:GO:0005829
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006397
GO:GO:0003723 eggNOG:COG5161 KO:K14401 EMBL:AY140902 EMBL:AB025607
EMBL:AB018109 IPI:IPI00533913 RefSeq:NP_199979.2 UniGene:At.43551
IntAct:Q9FGR0 STRING:Q9FGR0 PaxDb:Q9FGR0 PRIDE:Q9FGR0
EnsemblPlants:AT5G51660.1 GeneID:835240 KEGG:ath:AT5G51660
TAIR:At5g51660 HOGENOM:HOG000265012 InParanoid:Q9FGR0 OMA:NIGDNRY
PhylomeDB:Q9FGR0 ProtClustDB:CLSN2680511 Genevestigator:Q9FGR0
GermOnline:AT5G51660 Uniprot:Q9FGR0
Length = 1442
Score = 208 (78.3 bits), Expect = 3.5e-23, Sum P(4) = 3.5e-23
Identities = 81/295 (27%), Positives = 135/295 (45%)
Query: 761 PLDTFEYGCSI----LSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE---DGKL 813
P+ T E+ ++ L + + ++ VGTAYV E+ +GR+L+F D
Sbjct: 1104 PMQTSEHALTVRVVTLLNASTGENETLLAVGTAYVQGED-VAARGRVLLFSFGKNGDNSQ 1162
Query: 814 QLIAE---KETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILA 870
++ E +E KGA+ ++ + G LL + KI L+KW +GT EL
Sbjct: 1163 NVVTEVYSRELKGAISAVASIQGHLLISSGPKIILHKW----NGT-ELNGVAFFDAP--P 1215
Query: 871 LYVQTRG---DFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDD--IYL 925
LYV + FI++GD+ KSI L +K + + A+D+ + A E L D + L
Sbjct: 1216 LYVVSMNVVKSFILLGDVHKSIYFLSWKEQGSQLSLLAKDFESLDCFATEFLIDGSTLSL 1275
Query: 926 GAENNFNLFTVRKNSEGATDEERG-RLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIP 984
+ V + + +G +L E+H+G V++F +V D + +
Sbjct: 1276 AVSDEQKNIQVFYYAPKMIESWKGLKLLSRAEFHVGAHVSKFLRLQMVSSGADK-INRF- 1333
Query: 985 TVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKK 1039
++FGT++G G IA L + L+ LQ L + V GLN +R F + K
Sbjct: 1334 ALLFGTLDGSFGCIAPLDEVTFRRLQSLQKKLVDAVPHVAGLNPLAFRQFRSSGK 1388
Score = 102 (41.0 bits), Expect = 3.5e-23, Sum P(4) = 3.5e-23
Identities = 38/124 (30%), Positives = 58/124 (46%)
Query: 155 NIR-LEELQVLDIKFLYGCAKPTIVVLYQDNKD-ARHV--KTYEVALK----DKDFVEGP 206
N+R LE V D FL+G +P IV+L ++ A V K + L + + P
Sbjct: 240 NLRDLEMKHVKDFVFLHGYIEPVIVILQEEEHTWAGRVSWKHHTCVLSALSINSTLKQHP 299
Query: 207 --WSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCSANAFKAIPIRPSITKAYGRVDAD 264
WS NL + A L+ VP P+ GVL++ TI Y S +A A+ + + A +
Sbjct: 300 VIWSAINLPHDAYKLLAVPSPIGGVLVLCANTIHYHSQSASCALALNNYASSADSSQELP 359
Query: 265 GSRY 268
S +
Sbjct: 360 ASNF 363
Score = 98 (39.6 bits), Expect = 3.5e-23, Sum P(4) = 3.5e-23
Identities = 34/125 (27%), Positives = 58/125 (46%)
Query: 329 NLQPDAKGSY-VEVLERYVNLGPIVDFC----------VVDLERQGQGQVVTCSGAYKDG 377
N A+ S+ V + VN+GP+ DF + +Q ++V CSG K+G
Sbjct: 494 NNSDSAQKSFSFAVRDSLVNVGPVKDFAYGLRINADANATGVSKQSNYELVCCSGHGKNG 553
Query: 378 SLRIVRNGIGINEQASVELQGIKGMWSL--RSST------------DDPFDTFLVVSFIS 423
+L ++R I VEL G KG+W++ +SS +D + +L++S +
Sbjct: 554 ALCVLRQSIRPEMITEVELPGCKGIWTVYHKSSRGHNADSSKMAADEDEYHAYLIISLEA 613
Query: 424 ETRIL 428
T +L
Sbjct: 614 RTMVL 618
Score = 55 (24.4 bits), Expect = 3.5e-23, Sum P(4) = 3.5e-23
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 302 IASTISYLDNAVVYIGSSYGDSQLIKLN 329
+AS I+ + N++ ++GS GDS L++ +
Sbjct: 414 LASDITSVGNSLFFLGSRLGDSLLVQFS 441
>FB|FBgn0024698 [details] [associations]
symbol:Cpsf160 "Cleavage and polyadenylation specificity
factor 160" species:7227 "Drosophila melanogaster" [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=ISS;NAS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS;NAS] [GO:0006379 "mRNA cleavage" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR004871
Pfam:PF03178 EMBL:AE013599 GO:GO:0022008 GO:GO:0006378
GO:GO:0003723 eggNOG:COG5161 KO:K14401 GO:GO:0005847 GO:GO:0006379
GeneTree:ENSGT00550000075040 OMA:NIGDNRY EMBL:AF241364
EMBL:AF241365 EMBL:AF241366 EMBL:AY051896 RefSeq:NP_725397.1
RefSeq:NP_995833.1 UniGene:Dm.3414 ProteinModelPortal:Q9V726
STRING:Q9V726 PaxDb:Q9V726 PRIDE:Q9V726 EnsemblMetazoa:FBtr0089258
GeneID:44250 KEGG:dme:Dmel_CG10110 CTD:44250 FlyBase:FBgn0024698
InParanoid:Q9V726 OrthoDB:EOG4ZCRK8 PhylomeDB:Q9V726
GenomeRNAi:44250 NextBio:837008 Bgee:Q9V726 GermOnline:CG10110
Uniprot:Q9V726
Length = 1455
Score = 248 (92.4 bits), Expect = 3.6e-23, Sum P(7) = 3.6e-23
Identities = 91/328 (27%), Positives = 160/328 (48%)
Query: 783 YYCVGTAYVLPEENEPTKGRILVF-----IVEDGK------LQLIAEKETKGAVYSLNAF 831
Y C+GT + E+ ++G I ++ + E GK ++ I +KE KG V +++
Sbjct: 1133 YLCIGTNFNYSEDIT-SRGNIHIYDIIEVVPEPGKPMTKFKIKEIFKKEQKGPVSAISDV 1191
Query: 832 NGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISL 891
G L+ + QKI Y W LRD +L +I + T I + D+ KSISL
Sbjct: 1192 LGFLVTGLGQKI--YIWQLRDG---DLIGVAFIDTNIYVHQIITVKSLIFIADVYKSISL 1246
Query: 892 LIYKHEEGAIEERARDYNANWMSAVEILDDDIYLG-----AENNFNLFTVRKNSEGATDE 946
L ++ E + +RD+N + +E + D+ LG AE N ++ + + +
Sbjct: 1247 LRFQEEYRTLSLASRDFNPLEVYGIEFMVDNSNLGFLVTDAERNIIVYMYQPEARESLGG 1306
Query: 947 ERGRLEVVGEYHLGEFVNR-FR---HGS-LVMRLPDSDVGQIPTVIFGTVNGVIGVIASL 1001
++ L +YHLG+ VN FR H L R P + V++GT++G +G L
Sbjct: 1307 QK--LLRKADYHLGQVVNTMFRVQCHQKGLHQRQPFLYENK-HFVVYGTLDGALGYCLPL 1363
Query: 1002 PHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKT-VD-AKNFLDGDLIESFLDLS 1059
P + Y LQ L + + GLN +++R+ + KK ++ ++ +DGDLI S+ ++
Sbjct: 1364 PEKVYRRFLMLQNVLLSYQEHLCGLNPKEYRTLKSSKKQGINPSRCIIDGDLIWSYRLMA 1423
Query: 1060 RTRMDEISKTMNVSVEELCKRVEELTRL 1087
+ +E++K + EE+ + E+ RL
Sbjct: 1424 NSERNEVAKKIGTRTEEILGDLLEIERL 1451
Score = 88 (36.0 bits), Expect = 3.6e-23, Sum P(7) = 3.6e-23
Identities = 43/153 (28%), Positives = 70/153 (45%)
Query: 336 GSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVE 395
G VE E V L P + + DL+ + +V +G K+G+L + N I S E
Sbjct: 502 GERVEFEEDGVTLRPHAE-SLQDLKIE----LVAATGHSKNGALSVFVNCINPQIITSFE 556
Query: 396 LQGIKGMWSL------RSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQ 449
L G +W++ +SS +D D F+++S + T L + GF
Sbjct: 557 LDGCLDVWTVFDDATKKSSRNDQHD-FMLLSQRNST--LVLQTGQEINEIENTGFTVNQP 613
Query: 450 TLFCHDAIYNQ-LVQVTSGSVRLVSSTSRELRN 481
T+F + + +VQVT+ VRL+ T R ++N
Sbjct: 614 TIFVGNLGQQRFIVQVTTRHVRLLQGT-RLIQN 645
Score = 83 (34.3 bits), Expect = 3.6e-23, Sum P(7) = 3.6e-23
Identities = 39/165 (23%), Positives = 71/165 (43%)
Query: 41 EIHLLTPQGLQPMLDVPIYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELI 100
E+ L L+ + +YG + +L+ G +D L I+ + K VLQ D ++ L
Sbjct: 59 EMRLAPKMRLECLATYTLYGNVMSLQCVSLAGAMRDALLISFKDAKLSVLQHDPDTFALK 118
Query: 101 TRAMGDVSDRIGRPTDNGQIGI----IDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNI 156
T ++ + R G+ + +DPD R + +Y V+PF L
Sbjct: 119 TLSLHYFEEDDIRGGWTGRYFVPTVRVDPDSRCAVMLVYGKRLVVLPFRKDNSL------ 172
Query: 157 RLEELQVLDIKFLYGCAKPTIVVLYQDNKDARHVKTYEVALKDKD 201
+E+++ D+K + PT +V + +Y +AL+D D
Sbjct: 173 --DEIELADVKPIKKA--PTAMV-----SRTPIMASYLIALRDLD 208
Score = 76 (31.8 bits), Expect = 1.7e-22, Sum P(7) = 1.7e-22
Identities = 23/87 (26%), Positives = 44/87 (50%)
Query: 163 VLDIKFLYGCAKPTIVVLYQDNKDAR-HVKTYE-------VALKDKDFVEGP--WSQNNL 212
VLDI+FL+G +PT+++LY+ + +K ++L + V P W+ N+L
Sbjct: 214 VLDIQFLHGYYEPTLLILYEPVRTCPGRIKVRSDTCVLVAISLNIQQRVH-PIIWTVNSL 272
Query: 213 DNGADLLIPVPPPLCGVLIIGEETIVY 239
+ P+ P+ G L++ ++Y
Sbjct: 273 PFDCLQVYPIQKPIGGCLVMTVNAVIY 299
Score = 44 (20.5 bits), Expect = 3.6e-23, Sum P(7) = 3.6e-23
Identities = 14/66 (21%), Positives = 27/66 (40%)
Query: 669 EVSHMCPFNSAAFPDS-LAIAKEGELTIGTIDDIQKLH----IRSIPLGEHPRRICHQEQ 723
+V FN+ P+ L EL I + +R +PL PR++ + +
Sbjct: 984 DVRSFAAFNNVNIPNGFLYFDTTYELKISVLPSYLSYDSVWPVRKVPLRCTPRQLVYHRE 1043
Query: 724 SRTFAI 729
+R + +
Sbjct: 1044 NRVYCL 1049
Score = 42 (19.8 bits), Expect = 3.6e-23, Sum P(7) = 3.6e-23
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 11 HKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTP 47
H T V S F + + NL++A ++++ + P
Sbjct: 9 HSATAVEFSIACRFFNNLDENLVVAGANVLKVYRIAP 45
Score = 40 (19.1 bits), Expect = 3.6e-23, Sum P(7) = 3.6e-23
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 302 IASTISYLDNAVVYIGSSYGDSQLI 326
+ S I L + +++GS G+S L+
Sbjct: 381 LTSCICVLHSEYIFLGSRLGNSLLL 405
Score = 40 (19.1 bits), Expect = 3.6e-23, Sum P(7) = 3.6e-23
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 544 PSYSQIAAVGMWTDISVRIFSLPDLNLI 571
PSY + A T + I+S+PD+ L+
Sbjct: 790 PSYWLVVARQSGT---LEIYSMPDMKLV 814
Score = 38 (18.4 bits), Expect = 1.8e-18, Sum P(6) = 1.8e-18
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 234 EETIVYCSANAFKAIPIRPSI 254
+E +V AN K I P++
Sbjct: 27 DENLVVAGANVLKVYRIAPNV 47
>UNIPROTKB|F1PC28 [details] [associations]
symbol:CPSF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006379 "mRNA cleavage" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IEA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0006378 GO:GO:0003730
GO:GO:0005847 GO:GO:0006379 GeneTree:ENSGT00550000075040
OMA:NIGDNRY EMBL:AAEX03008966 ProteinModelPortal:F1PC28
Ensembl:ENSCAFT00000002514 Uniprot:F1PC28
Length = 1398
Score = 229 (85.7 bits), Expect = 2.1e-22, Sum P(6) = 2.1e-22
Identities = 100/376 (26%), Positives = 171/376 (45%)
Query: 740 ESEMHFVRLLDDQTFEFI--STYPLDTFEYGCSILSCSFSDDSNV-----YYCVGTAYVL 792
+ E ++L+ ++E I + L+ +E+ + + S + V Y GT +
Sbjct: 1025 QQEAFSIQLISPVSWEAIPNARIELEEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQ 1084
Query: 793 PEENEPTKGRILVFIV-----EDG------KLQLIAEKETKGAVYSLNAFNGKLLAAINQ 841
EE +GRIL+ V E G K +++ EKE KG V +L NG L++AI Q
Sbjct: 1085 GEE-VTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQ 1143
Query: 842 KIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAI 901
KI L W LR EL + + + +FI+ D+MKSISLL Y+ E +
Sbjct: 1144 KIFL--WSLR---ASELTGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTL 1198
Query: 902 EERARDYNANWMSAVEILDDDIYLG---AENNFNLFTVRKNSEGATDEERGRLEVVGEYH 958
+RD + +V+ + D+ LG ++ + NL E RL ++H
Sbjct: 1199 SLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFH 1258
Query: 959 LGEFVNRF-R---HGSLVMRLPDSDVGQIPTVI-FGTVNGVIGVIASLPHEQYLFLEKLQ 1013
+G VN F R G+ S V + + F T++G IG++ + + Y L LQ
Sbjct: 1259 VGAHVNTFWRTPCRGAAEGPSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQ 1318
Query: 1014 TNLRKVIKGVGGLNHEQWRSFNNEKKTVD--AKNFLDGDLIESFLDLSRTRMDEISKTMN 1071
L ++ GLN +R + +++ + +N LDG+L+ +L LS E++K +
Sbjct: 1319 NALTTMLPHHAGLNPRAFRMLHVDRRILQNAVRNVLDGELLNRYLYLSTMERGELAKKIG 1378
Query: 1072 VSVEELCKRVEELTRL 1087
+ + + + E R+
Sbjct: 1379 TTPDIILDDLLETDRV 1394
Score = 80 (33.2 bits), Expect = 2.1e-22, Sum P(6) = 2.1e-22
Identities = 21/88 (23%), Positives = 44/88 (50%)
Query: 161 LQVLDIKFLYGCAKPTIVVLYQDNKD-----ARHVKTYEVALKDKDFVEG--P--WSQNN 211
L ++D++FL+G +PT+++L++ N+ A T + + + P WS +
Sbjct: 158 LNIVDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNITQKVHPVIWSLTS 217
Query: 212 LDNGADLLIPVPPPLCGVLIIGEETIVY 239
L + VP P+ GV++ +++Y
Sbjct: 218 LPFDCTQALAVPKPIGGVVVFAVNSLLY 245
Score = 71 (30.1 bits), Expect = 2.1e-22, Sum P(6) = 2.1e-22
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 340 EVLERYVNLGPIVDFCVVD---LERQGQG------QVVTCSGAYKDGSLRIVRNGIGINE 390
EV + +N+GP + + + L + Q ++V CSG K+G+L +++ I
Sbjct: 420 EVCDSILNIGPCANAAMGEPAFLSEEFQNSPEPDLEIVVCSGYGKNGALSVLQKSIRPQV 479
Query: 391 QASVELQGIKGMWSL 405
+ EL G MW++
Sbjct: 480 VTTFELPGCYDMWTV 494
Score = 61 (26.5 bits), Expect = 2.1e-22, Sum P(6) = 2.1e-22
Identities = 22/122 (18%), Positives = 54/122 (44%)
Query: 36 KCTRIEIHLLTPQGLQPMLDVPIYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDAE 95
+ T + H + L+ + +G + ++ + G +D L ++ + K V+++D
Sbjct: 9 RSTEGKAHREHREKLELVASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPG 68
Query: 96 SSELITRAMG-----DVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQL 150
+ +L T ++ ++ D + ++ + DPD R + +Y V+PF +
Sbjct: 69 THDLKTLSLHYFEEPELRDGFVQNVHTPRVRV-DPDGRCAAMLIYGTRLVVLPFRRESLA 127
Query: 151 KE 152
+E
Sbjct: 128 EE 129
Score = 56 (24.8 bits), Expect = 2.1e-22, Sum P(6) = 2.1e-22
Identities = 17/79 (21%), Positives = 31/79 (39%)
Query: 670 VSHMCPFNSAAFPDS-LAIAKEGELTIGTIDDIQKLH----IRSIPLGEHPRRICHQEQS 724
+ PF++ P L ++GEL I + +R IPL + + +S
Sbjct: 927 IDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRCTAHYVAYHVES 986
Query: 725 RTFAICSLKNQSCAEESEM 743
+ +A+ + N C M
Sbjct: 987 KVYAVATSTNMPCTRIPRM 1005
Score = 41 (19.5 bits), Expect = 2.1e-22, Sum P(6) = 2.1e-22
Identities = 9/47 (19%), Positives = 23/47 (48%)
Query: 281 VITHEKEKVTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQLIK 327
+IT V + + + +++ ++ +++GS G+S L+K
Sbjct: 306 LITDGMRSVRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLK 352
>UNIPROTKB|F1RSN8 [details] [associations]
symbol:CPSF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] InterPro:IPR004871
Pfam:PF03178 GO:GO:0006378 GO:GO:0003730 GO:GO:0005847
GO:GO:0006379 GeneTree:ENSGT00550000075040 OMA:NIGDNRY
EMBL:CU468594 Ensembl:ENSSSCT00000006486 Uniprot:F1RSN8
Length = 1108
Score = 229 (85.7 bits), Expect = 5.8e-22, Sum P(6) = 5.8e-22
Identities = 100/376 (26%), Positives = 171/376 (45%)
Query: 740 ESEMHFVRLLDDQTFEFI--STYPLDTFEYGCSILSCSFSDDSNV-----YYCVGTAYVL 792
+ E ++L+ ++E I + L+ +E+ + + S + V Y GT +
Sbjct: 735 QQEAFSIQLISPVSWEAIPNARIELEEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQ 794
Query: 793 PEENEPTKGRILVFIV-----EDG------KLQLIAEKETKGAVYSLNAFNGKLLAAINQ 841
EE +GRIL+ V E G K +++ EKE KG V +L NG L++AI Q
Sbjct: 795 GEE-VTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQ 853
Query: 842 KIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAI 901
KI L W LR EL + + + +FI+ D+MKSISLL Y+ E +
Sbjct: 854 KIFL--WSLR---ASELTGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTL 908
Query: 902 EERARDYNANWMSAVEILDDDIYLG---AENNFNLFTVRKNSEGATDEERGRLEVVGEYH 958
+RD + +V+ + D+ LG ++ + NL E RL ++H
Sbjct: 909 SLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFH 968
Query: 959 LGEFVNRF-R---HGSLVMRLPDSDVGQIPTVI-FGTVNGVIGVIASLPHEQYLFLEKLQ 1013
+G VN F R G+ S V + + F T++G IG++ + + Y L LQ
Sbjct: 969 VGAHVNTFWRTPCRGATDGPSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQ 1028
Query: 1014 TNLRKVIKGVGGLNHEQWRSFNNEKKTVD--AKNFLDGDLIESFLDLSRTRMDEISKTMN 1071
L ++ GLN +R + +++ + +N LDG+L+ +L LS E++K +
Sbjct: 1029 NALTTMLPHHAGLNPRAFRMLHVDRRVLQNAVRNVLDGELLNRYLYLSTMERGELAKKIG 1088
Query: 1072 VSVEELCKRVEELTRL 1087
+ + + + E R+
Sbjct: 1089 TTPDIILDDLLETDRV 1104
Score = 81 (33.6 bits), Expect = 5.8e-22, Sum P(6) = 5.8e-22
Identities = 22/88 (25%), Positives = 44/88 (50%)
Query: 161 LQVLDIKFLYGCAKPTIVVLYQDNKD-----ARHVKTYEVALKDKDFVEG--P--WSQNN 211
L ++D++FL+G +PT+++L++ N+ A T + + + P WS +
Sbjct: 203 LNIVDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNITQKVHPVIWSLTS 262
Query: 212 LDNGADLLIPVPPPLCGVLIIGEETIVY 239
L + VP P+ GV+I +++Y
Sbjct: 263 LPFDCTQALAVPKPIGGVVIFAVNSLLY 290
Score = 60 (26.2 bits), Expect = 5.8e-22, Sum P(6) = 5.8e-22
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 10 AHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQP 52
AH PT + S NF + E NL++A +++ ++ L P
Sbjct: 8 AHPPTGLEFSMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEAP 50
Score = 55 (24.4 bits), Expect = 5.8e-22, Sum P(6) = 5.8e-22
Identities = 17/79 (21%), Positives = 31/79 (39%)
Query: 670 VSHMCPFNSAAFPDS-LAIAKEGELTIGTIDDIQKLH----IRSIPLGEHPRRICHQEQS 724
+ PF++ P L ++GEL I + +R IPL + + +S
Sbjct: 637 IDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRCTAHYVAYHVES 696
Query: 725 RTFAICSLKNQSCAEESEM 743
+ +A+ + N C M
Sbjct: 697 KVYAVATSTNTPCTRIPRM 715
Score = 53 (23.7 bits), Expect = 5.8e-22, Sum P(6) = 5.8e-22
Identities = 18/86 (20%), Positives = 40/86 (46%)
Query: 72 GEAQDFLFIATERYKFCVLQWDAESSELITRAMG-----DVSDRIGRPTDNGQIGIIDPD 126
G +D L ++ + K V+++D + +L T ++ ++ D + ++ + DPD
Sbjct: 90 GAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPELRDGFVQNVHTPRVRV-DPD 148
Query: 127 CRLIGLHLYDGLFKVIPFDNKGQLKE 152
R + +Y V+PF + +E
Sbjct: 149 GRCAAMLIYGTRLVVLPFRRESLAEE 174
Score = 48 (22.0 bits), Expect = 5.8e-22, Sum P(6) = 5.8e-22
Identities = 22/112 (19%), Positives = 43/112 (38%)
Query: 467 GSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHA 526
G V + + S N+ P G ++N T + L T G + L+ +
Sbjct: 278 GGVVIFAVNSLLYLNQSVPPYGVALNSLTTGTTAFPLRTQEGVRITLDCAQAAFISSQDV 337
Query: 527 QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGG 578
+ + P P S++ A+ ++ D+S +F+ ++ LGG
Sbjct: 338 ARPPDPAAAPTEPRPPPPQQSKVIALCVYRDVS-GMFTTESRLGGARDELGG 388
>CGD|CAL0004426 [details] [associations]
symbol:orf19.5391 species:5476 "Candida albicans" [GO:0071004
"U2-type prespliceosome" evidence=IEA] [GO:0005686 "U2 snRNP"
evidence=IEA] [GO:0030620 "U2 snRNA binding" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 CGD:CAL0004426
GO:GO:0008380 Gene3D:2.130.10.10 GO:GO:0006397 GO:GO:0005681
GO:GO:0003676 GO:GO:0007049 eggNOG:NOG247734 EMBL:AACQ01000051
EMBL:AACQ01000050 RefSeq:XP_717672.1 RefSeq:XP_717766.1
STRING:Q5A7S5 GeneID:3640538 GeneID:3640666 KEGG:cal:CaO19.12846
KEGG:cal:CaO19.5391 KO:K12830 Uniprot:Q5A7S5
Length = 1219
Score = 179 (68.1 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 94/370 (25%), Positives = 167/370 (45%)
Query: 746 VRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV-----YYCVGTAY---VLPEENE 797
++++D ++ + I + LD E S+ + SF+ S + VG +LP N
Sbjct: 866 IQVVDSKSNQVIQSLQLDGNESIVSMSAVSFNKTSTPSVPASHLVVGVCTNQTILP--NS 923
Query: 798 PTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRE 857
K + F + LQL+ + E L F KLL A I+LY D G ++
Sbjct: 924 YDKSYLYTFKIGKKHLQLVHKTELDHIPQVLENFQDKLLVASGNHIRLY-----DIGQKQ 978
Query: 858 LQSEC----GHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE--ERARDYNAN 911
L + +I + QT I++ D KS S++ K +E + A D
Sbjct: 979 LLKKSTTIIDFSTNINKIIPQTNR--IIICDSHKS-SIVFAKFDESQNQFVPFADDVMKR 1035
Query: 912 WMSAVEILDDDIYLGAENNFNLFTVRKN---SEGATDE------ERG-------RLEVVG 955
++++ LD D +G + N+F R + S+ A D+ + G +L+ +
Sbjct: 1036 QITSIMNLDIDTLIGGDKFGNIFVTRIDEDISKQADDDWTILKTQDGILNSCPYKLQNLI 1095
Query: 956 EYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYL-FLEKLQT 1014
E+H+G+ + F G L + +S VI+ + G IG++ L + + L LQ
Sbjct: 1096 EFHIGDIITSFNLGCLNLAGTES-------VIYTGLQGTIGLLIPLVSKSEVELLFNLQL 1148
Query: 1015 NLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSV 1074
+++ + G +H + RS+ N KN +DGDL+E FL+ + EIS+ +N SV
Sbjct: 1149 YMQQSQNNLVGKDHLKLRSYYNP-----IKNVIDGDLLERFLEFDISLKIEISRKLNKSV 1203
Query: 1075 EELCKRVEEL 1084
++ K++ +L
Sbjct: 1204 NDIEKKLIDL 1213
Score = 141 (54.7 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 69/323 (21%), Positives = 136/323 (42%)
Query: 339 VEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQG 398
++VLE L PI D ++D ++VT S ++ + +G+ L
Sbjct: 433 IDVLE---TLSPITDSKIID------SKLVTLSS---HSYVKSITHGVPTTTLVESPLPI 480
Query: 399 IK-GMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAI 457
+++ + S + D +LV+S ++ L +++ F T+
Sbjct: 481 TPTDIFTTKLSLESANDEYLVISSSLSSKTLVLSIGEVVEDVEDSEFVLDQPTIAVQQVG 540
Query: 458 YNQLVQVTSGSVRLVSSTSRELRN-EWKSPPGYSVNVATANASQVLLATGGGHLVYLEIG 516
+VQ+ S ++ V + + + +W P G ++ AT N QVL+A +VY EI
Sbjct: 541 IASVVQIYSNGIKHVRTVNGNKKTTDWFPPAGITITHATTNNQQVLIALSNLSVVYFEI- 599
Query: 517 DGILTEVKHAQLEYEISC-LDINPIGENPSY-SQIAAVGMWTDISVRIFSLPDLNLITKE 574
D ++ Q EI+ + I EN S S A +G +D ++++ SL + N + +
Sbjct: 600 DATDDQLIEYQDRLEIATTITAMAIQENISEKSPFAIIGC-SDETIQVVSLQEHNCLEIK 658
Query: 575 HLGGEIIPRSVL-LCAFEGI-SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITL 632
L S L + G +++ + +G ++ G L++ + +G++P++L
Sbjct: 659 SLQALSANSSSLKMLKSSGKETHVHIGMENGVYARIKIDTINGNLSNSRVKYIGSKPVSL 718
Query: 633 RTFSSKNTTH-VFAASDRPTVIY 654
N + A S P + Y
Sbjct: 719 SVIKFSNEIEGILAISSAPWISY 741
Score = 78 (32.5 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 52/253 (20%), Positives = 103/253 (40%)
Query: 2 SIWNYVVTAHKPTNVTHSCVGNF-----TSPQELNLIIAKCTRIEIHLLTPQG--LQPML 54
S++ Y +T P+ S VG F ++ L++ T +++ + + L+
Sbjct: 39 SVYLYNLTLKPPSYYISSIVGQFYKQDNSTKNAQQLVLVSSTTLQLFEINEEAGKLELQS 98
Query: 55 DVPIYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIGRP 114
+ G I ++E E D + I ++ +LQ+D ++ + I++ ++
Sbjct: 99 SQNLLGIINSIEKICL-SEV-DGVVITSDSGNLSILQYDNKTKKFISKIQEPMTKNGWGR 156
Query: 115 TDNGQIGIIDPD--CRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLY-- 170
G+ IDP+ C L+ + LF I ++ G + + + QVL +K +
Sbjct: 157 NYVGENLAIDPENRCILVAAMEKNKLFYKIESNSSGSKELSSPLEAHSKQVLCLKIVALN 216
Query: 171 -GCAKPTIVVLYQDNKDARHVKTYEVALKDKDFVEG-PWSQNN--LDNGADLLIPVPPPL 226
P L + + YE+ V+ P S N+ L N + LIP+P +
Sbjct: 217 TDHNNPLFGALELTPEKKCIINYYELDQGLNHVVKKKPNSSNSDPLPNDVNYLIPLPGHI 276
Query: 227 CGVLIIGEETIVY 239
G+++ G Y
Sbjct: 277 GGMVVCGTNWCFY 289
>UNIPROTKB|F8WF81 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] InterPro:IPR004871 Pfam:PF03178
GO:GO:0005634 GO:GO:0016055 GO:GO:0003684 EMBL:AP003108
HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI00942006
ProteinModelPortal:F8WF81 SMR:F8WF81 Ensembl:ENST00000451943
ArrayExpress:F8WF81 Bgee:F8WF81 Uniprot:F8WF81
Length = 127
Score = 256 (95.2 bits), Expect = 1.2e-20, P = 1.2e-20
Identities = 54/114 (47%), Positives = 72/114 (63%)
Query: 985 TVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAK 1044
+V+FGTVNG+IG++ SL Y L +Q L KVIK VG + H WRSF+ E+KT A
Sbjct: 14 SVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPAT 73
Query: 1045 NFLDGDLIESFLDLSRTRMDEISKTMN----------VSVEELCKRVEELTRLH 1088
F+DGDLIESFLD+SR +M E+ + + ++L K VEELTR+H
Sbjct: 74 GFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 127
>RGD|1306406 [details] [associations]
symbol:Cpsf1 "cleavage and polyadenylation specific factor 1,
160kDa" species:10116 "Rattus norvegicus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA;ISO] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA;ISO]
[GO:0006378 "mRNA polyadenylation" evidence=IEA;ISO] [GO:0006379
"mRNA cleavage" evidence=IEA;ISO] InterPro:IPR004871 Pfam:PF03178
RGD:1306406 GO:GO:0005634 GO:GO:0003676 EMBL:CH473950 KO:K14401
GeneTree:ENSGT00550000075040 CTD:29894 IPI:IPI00949657
RefSeq:NP_001124043.1 UniGene:Rn.40455 Ensembl:ENSRNOT00000066244
GeneID:366952 KEGG:rno:366952 UCSC:RGD:1306406 NextBio:690318
Uniprot:D4A0H5
Length = 1386
Score = 161 (61.7 bits), Expect = 1.5e-18, Sum P(8) = 1.5e-18
Identities = 57/220 (25%), Positives = 104/220 (47%)
Query: 878 DFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLG---AENNFNLF 934
+FI+ D+MKSISLL Y+ E + +RD + +V+ + D+ LG ++ + NL
Sbjct: 1163 NFILAADVMKSISLLRYQEESKTLSLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLM 1222
Query: 935 TVRKNSEGATDEERGRLEVVGEYHLGEFVNRF-R---HGSLVMRLPDSDVGQIPTVI-FG 989
E RL ++H+G VN F R G+ S + + + F
Sbjct: 1223 VYMYLPEAKESFGGMRLLRRADFHVGAHVNTFWRTPCRGAAEGPSKKSVMWENKHITWFA 1282
Query: 990 TVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVD--AKNFL 1047
T++G IG++ + + Y L LQ L ++ GLN +R + +++ + +N L
Sbjct: 1283 TLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRAFRMLHVDRRILQNAVRNVL 1342
Query: 1048 DGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELTRL 1087
DG+L+ +L LS E++K + + + + + E R+
Sbjct: 1343 DGELLNRYLYLSTMERSELAKKIGTTPDIILDDLLETDRV 1382
Score = 82 (33.9 bits), Expect = 1.5e-18, Sum P(8) = 1.5e-18
Identities = 22/88 (25%), Positives = 44/88 (50%)
Query: 161 LQVLDIKFLYGCAKPTIVVLYQDNKD-----ARHVKTYEVALKDKDFVEG--P--WSQNN 211
L ++D++FL+G +PT+++L++ N+ A T + + + P WS +
Sbjct: 201 LNIIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNITQKVHPVIWSLTS 260
Query: 212 LDNGADLLIPVPPPLCGVLIIGEETIVY 239
L + VP P+ GV+I +++Y
Sbjct: 261 LPFDCTQALAVPKPIGGVVIFAVNSLLY 288
Score = 74 (31.1 bits), Expect = 1.5e-18, Sum P(8) = 1.5e-18
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 340 EVLERYVNLGPIVDFCVVD---LERQGQGQ----VVTCSGAYKDGSLRIVRNGIGINEQA 392
EV + +N+GP + V + L + + +V CSG K+G+L +++ I
Sbjct: 461 EVCDSMLNIGPCANAAVGEPAFLSEENSPEPDLEIVVCSGYGKNGALSVLQKSIRPQVVT 520
Query: 393 SVELQGIKGMWSL 405
+ EL G MW++
Sbjct: 521 TFELPGCYDMWTV 533
Score = 60 (26.2 bits), Expect = 1.5e-18, Sum P(8) = 1.5e-18
Identities = 20/108 (18%), Positives = 49/108 (45%)
Query: 50 LQPMLDVPIYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMG---- 105
L+ + +G + ++ + G +D L ++ + K V+++D + +L T ++
Sbjct: 66 LELVASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEE 125
Query: 106 -DVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKE 152
++ D + ++ + DPD R + +Y V+PF + +E
Sbjct: 126 PELRDGFVQNVHTPRVRV-DPDGRCAAMLIYGTRLVVLPFRRESLAEE 172
Score = 56 (24.8 bits), Expect = 1.5e-18, Sum P(8) = 1.5e-18
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 10 AHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLL 45
AH PT + + NF + E NL++A +++ ++ L
Sbjct: 8 AHPPTGLEFAMYCNFFNNSERNLVVAGTSQLYVYRL 43
Score = 55 (24.4 bits), Expect = 1.5e-18, Sum P(8) = 1.5e-18
Identities = 17/79 (21%), Positives = 31/79 (39%)
Query: 670 VSHMCPFNSAAFPDS-LAIAKEGELTIGTIDDIQKLH----IRSIPLGEHPRRICHQEQS 724
+ PF++ P L ++GEL I + +R IPL + + +S
Sbjct: 966 IDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRCTAHYVAYHVES 1025
Query: 725 RTFAICSLKNQSCAEESEM 743
+ +A+ + N C M
Sbjct: 1026 KVYAVATSTNTPCTRIPRM 1044
Score = 51 (23.0 bits), Expect = 1.5e-18, Sum P(8) = 1.5e-18
Identities = 24/117 (20%), Positives = 55/117 (47%)
Query: 740 ESEMHFVRLLDDQTFEFI--STYPLDTFEYGCSILSCSFSDDSNV-----YYCVGTAYVL 792
+ E ++L+ ++E I + L+ +E+ + + S + V Y GT +
Sbjct: 1064 QQEAFSIQLISPVSWEAIPNARIELEEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQ 1123
Query: 793 PEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAA-INQKIQLYKW 848
EE +GRI ++ + +L +A +T+ ++ + + +LAA + + I L ++
Sbjct: 1124 GEE-VTCRGRIFLWSLRASELTGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRY 1179
Score = 46 (21.3 bits), Expect = 0.00021, Sum P(6) = 0.00021
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 602 DGHLLNFLLNMKTGELTDRKKVSLGTQP 629
DG LLN L + T E ++ K +GT P
Sbjct: 1343 DGELLNRYLYLSTMERSELAK-KIGTTP 1369
Score = 42 (19.8 bits), Expect = 1.5e-18, Sum P(8) = 1.5e-18
Identities = 13/66 (19%), Positives = 29/66 (43%)
Query: 281 VITHEKEKVTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLN--LQPDAKGSY 338
+IT V + + + +++ ++ +++GS G+S L+K LQ S
Sbjct: 349 LITDGMRSVRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASSV 408
Query: 339 VEVLER 344
E ++
Sbjct: 409 REAADK 414
>UNIPROTKB|J9P418 [details] [associations]
symbol:CPSF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004871
Pfam:PF03178 GO:GO:0005634 GO:GO:0003676
GeneTree:ENSGT00550000075040 EMBL:AAEX03008966
Ensembl:ENSCAFT00000043656 Uniprot:J9P418
Length = 1107
Score = 229 (85.7 bits), Expect = 3.5e-17, Sum P(4) = 3.5e-17
Identities = 100/376 (26%), Positives = 171/376 (45%)
Query: 740 ESEMHFVRLLDDQTFEFI--STYPLDTFEYGCSILSCSFSDDSNV-----YYCVGTAYVL 792
+ E ++L+ ++E I + L+ +E+ + + S + V Y GT +
Sbjct: 734 QQEAFSIQLISPVSWEAIPNARIELEEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQ 793
Query: 793 PEENEPTKGRILVFIV-----EDG------KLQLIAEKETKGAVYSLNAFNGKLLAAINQ 841
EE +GRIL+ V E G K +++ EKE KG V +L NG L++AI Q
Sbjct: 794 GEE-VTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQ 852
Query: 842 KIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAI 901
KI L W LR EL + + + +FI+ D+MKSISLL Y+ E +
Sbjct: 853 KIFL--WSLR---ASELTGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTL 907
Query: 902 EERARDYNANWMSAVEILDDDIYLG---AENNFNLFTVRKNSEGATDEERGRLEVVGEYH 958
+RD + +V+ + D+ LG ++ + NL E RL ++H
Sbjct: 908 SLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFH 967
Query: 959 LGEFVNRF-R---HGSLVMRLPDSDVGQIPTVI-FGTVNGVIGVIASLPHEQYLFLEKLQ 1013
+G VN F R G+ S V + + F T++G IG++ + + Y L LQ
Sbjct: 968 VGAHVNTFWRTPCRGAAEGPSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQ 1027
Query: 1014 TNLRKVIKGVGGLNHEQWRSFNNEKKTVD--AKNFLDGDLIESFLDLSRTRMDEISKTMN 1071
L ++ GLN +R + +++ + +N LDG+L+ +L LS E++K +
Sbjct: 1028 NALTTMLPHHAGLNPRAFRMLHVDRRILQNAVRNVLDGELLNRYLYLSTMERGELAKKIG 1087
Query: 1072 VSVEELCKRVEELTRL 1087
+ + + + E R+
Sbjct: 1088 TTPDIILDDLLETDRV 1103
Score = 71 (30.1 bits), Expect = 3.5e-17, Sum P(4) = 3.5e-17
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 340 EVLERYVNLGPIVDFCVVD---LERQGQG------QVVTCSGAYKDGSLRIVRNGIGINE 390
EV + +N+GP + + + L + Q ++V CSG K+G+L +++ I
Sbjct: 129 EVCDSILNIGPCANAAMGEPAFLSEEFQNSPEPDLEIVVCSGYGKNGALSVLQKSIRPQV 188
Query: 391 QASVELQGIKGMWSL 405
+ EL G MW++
Sbjct: 189 VTTFELPGCYDMWTV 203
Score = 56 (24.8 bits), Expect = 3.5e-17, Sum P(4) = 3.5e-17
Identities = 17/79 (21%), Positives = 31/79 (39%)
Query: 670 VSHMCPFNSAAFPDS-LAIAKEGELTIGTIDDIQKLH----IRSIPLGEHPRRICHQEQS 724
+ PF++ P L ++GEL I + +R IPL + + +S
Sbjct: 636 IDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRCTAHYVAYHVES 695
Query: 725 RTFAICSLKNQSCAEESEM 743
+ +A+ + N C M
Sbjct: 696 KVYAVATSTNMPCTRIPRM 714
Score = 41 (19.5 bits), Expect = 3.5e-17, Sum P(4) = 3.5e-17
Identities = 9/47 (19%), Positives = 23/47 (48%)
Query: 281 VITHEKEKVTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQLIK 327
+IT V + + + +++ ++ +++GS G+S L+K
Sbjct: 15 LITDGMRSVRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLK 61
>UNIPROTKB|F1NZF7 [details] [associations]
symbol:SF3B3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871 Pfam:PF03178
GO:GO:0005634 GO:GO:0003676 GeneTree:ENSGT00530000063396
EMBL:AADN02051593 EMBL:AADN02051594 IPI:IPI00819465
Ensembl:ENSGALT00000040057 ArrayExpress:F1NZF7 Uniprot:F1NZF7
Length = 504
Score = 234 (87.4 bits), Expect = 4.9e-16, P = 4.9e-16
Identities = 86/364 (23%), Positives = 167/364 (45%)
Query: 746 VRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYC-VGTAY-VLPEENEPTKGRI 803
+R+++ + L+ E S+ C FS+ +Y VG A ++ G +
Sbjct: 152 IRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTGEEWYVLVGVAKDLILNPRSVAGGFV 211
Query: 804 LVF--IVEDG-KLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQS 860
+ +V G KL+ + + + ++ F G++L + + +++Y D G ++L
Sbjct: 212 YTYKLLVNGGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVY-----DLGKKKLLR 266
Query: 861 ECGHHGHILALYV---QTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVE 917
+C + HI A Y+ QT G ++V D+ +S + YK E + A D W++
Sbjct: 267 KC-ENKHI-ANYICGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTAT 324
Query: 918 ILDDDIYLGAENNFNLFTVR--KNSEGATDEE---------RGRLEVVGEYHLGEFVNRF 966
+LD D GA+ N+ VR N+ DE+ RG L G E + +
Sbjct: 325 LLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLN--GASQKAEVIMNY 382
Query: 967 RHGSLVMRLPDSDV--GQIPTVIFGTVNGVIGVIASLP-HEQYLFLEKLQTNLRKVIKGV 1023
G V+ L + + G ++++ T++G IG++ HE + F + ++ +LR +
Sbjct: 383 HVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPL 442
Query: 1024 GGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEE 1083
G +H +RS+ KN +DGDL E F + + +++ ++ + E+ K++E+
Sbjct: 443 CGRDHLSFRSYY-----FPVKNVIDGDLCEQFNSMEPNKQKNVAEELDRTPPEVSKKLED 497
Query: 1084 L-TR 1086
+ TR
Sbjct: 498 IRTR 501
>UNIPROTKB|K7GNU1 [details] [associations]
symbol:CPSF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR004871 Pfam:PF03178
GeneTree:ENSGT00550000075040 EMBL:CU468594
Ensembl:ENSSSCT00000033207 Uniprot:K7GNU1
Length = 757
Score = 229 (85.7 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 100/376 (26%), Positives = 171/376 (45%)
Query: 740 ESEMHFVRLLDDQTFEFI--STYPLDTFEYGCSILSCSFSDDSNV-----YYCVGTAYVL 792
+ E ++L+ ++E I + L+ +E+ + + S + V Y GT +
Sbjct: 384 QQEAFSIQLISPVSWEAIPNARIELEEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQ 443
Query: 793 PEENEPTKGRILVFIV-----EDG------KLQLIAEKETKGAVYSLNAFNGKLLAAINQ 841
EE +GRIL+ V E G K +++ EKE KG V +L NG L++AI Q
Sbjct: 444 GEE-VTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQ 502
Query: 842 KIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAI 901
KI L W LR EL + + + +FI+ D+MKSISLL Y+ E +
Sbjct: 503 KIFL--WSLR---ASELTGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTL 557
Query: 902 EERARDYNANWMSAVEILDDDIYLG---AENNFNLFTVRKNSEGATDEERGRLEVVGEYH 958
+RD + +V+ + D+ LG ++ + NL E RL ++H
Sbjct: 558 SLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFH 617
Query: 959 LGEFVNRF-R---HGSLVMRLPDSDVGQIPTVI-FGTVNGVIGVIASLPHEQYLFLEKLQ 1013
+G VN F R G+ S V + + F T++G IG++ + + Y L LQ
Sbjct: 618 VGAHVNTFWRTPCRGATDGPSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQ 677
Query: 1014 TNLRKVIKGVGGLNHEQWRSFNNEKKTVD--AKNFLDGDLIESFLDLSRTRMDEISKTMN 1071
L ++ GLN +R + +++ + +N LDG+L+ +L LS E++K +
Sbjct: 678 NALTTMLPHHAGLNPRAFRMLHVDRRVLQNAVRNVLDGELLNRYLYLSTMERGELAKKIG 737
Query: 1072 VSVEELCKRVEELTRL 1087
+ + + + E R+
Sbjct: 738 TTPDIILDDLLETDRV 753
Score = 55 (24.4 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 17/79 (21%), Positives = 31/79 (39%)
Query: 670 VSHMCPFNSAAFPDS-LAIAKEGELTIGTIDDIQKLH----IRSIPLGEHPRRICHQEQS 724
+ PF++ P L ++GEL I + +R IPL + + +S
Sbjct: 286 IDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRCTAHYVAYHVES 345
Query: 725 RTFAICSLKNQSCAEESEM 743
+ +A+ + N C M
Sbjct: 346 KVYAVATSTNTPCTRIPRM 364
>UNIPROTKB|E1C725 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000075 "cell cycle
checkpoint" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016055 "Wnt receptor signaling pathway" evidence=IEA]
[GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IEA]
[GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=IEA]
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0005634 GO:GO:0005737
GO:GO:0043161 GO:GO:0016055 GO:GO:0003676 GO:GO:0042787
GO:GO:0000075 GO:GO:0031464 GO:GO:0031465
GeneTree:ENSGT00530000063396 EMBL:AADN02017118 EMBL:AADN02017119
IPI:IPI00820296 Ensembl:ENSGALT00000040602 ArrayExpress:E1C725
Uniprot:E1C725
Length = 90
Score = 188 (71.2 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 42/90 (46%), Positives = 56/90 (62%)
Query: 1012 LQTNLRKVIKGVGGLNHE---QWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISK 1068
+Q L KVIK VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+
Sbjct: 1 MQNRLNKVIKSVGKIEHSLYATWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVA 60
Query: 1069 TMNV----------SVEELCKRVEELTRLH 1088
+ + +V++L K VEELTR+H
Sbjct: 61 NLQIDDGSGMKREATVDDLIKIVEELTRIH 90
>POMBASE|SPBC1709.08 [details] [associations]
symbol:cft1 "cleavage factor one Cft1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=ISO]
[GO:0006378 "mRNA polyadenylation" evidence=ISO] [GO:0006379 "mRNA
cleavage" evidence=ISO] InterPro:IPR004871 Pfam:PF03178
PomBase:SPBC1709.08 GO:GO:0005829 EMBL:CU329671 GO:GO:0006378
GenomeReviews:CU329671_GR GO:GO:0003723 eggNOG:COG5161 KO:K14401
OMA:HNDRIFQ OrthoDB:EOG451HZS PIR:T39636 RefSeq:NP_595441.1
STRING:O74733 EnsemblFungi:SPBC1709.08.1 GeneID:2539694
KEGG:spo:SPBC1709.08 NextBio:20800847 GO:GO:0005847 GO:GO:0006379
Uniprot:O74733
Length = 1441
Score = 140 (54.3 bits), Expect = 2.0e-12, Sum P(6) = 2.0e-12
Identities = 75/362 (20%), Positives = 154/362 (42%)
Query: 748 LLDDQTFEFISTYPLDTFEYGCSI--LSCSFSDDSNV---YYCVGTAYVLPEENEPTKGR 802
L+ T+ I +Y FE S+ ++ S+ + + Y VGT+ + E+ +G
Sbjct: 1079 LVSPLTWTVIDSYEFQQFEIPLSVALVNLEVSETTKLRKPYIAVGTS-ITKGEDIAVRGS 1137
Query: 803 ILVFIVED-----G------KLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLR 851
+F + D G KL+L+ +E KG V + +G LL+ QK+ + + +
Sbjct: 1138 TYLFEIIDVVPQPGRPETRHKLKLVTREEIKGTVAVVCEVDGYLLSGQGQKV-IVRALED 1196
Query: 852 DDGTRELQS-ECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNA 910
+D + + G + L + + ++ GD+ ++++ + + E + ++ A
Sbjct: 1197 EDHLVGVSFIDLGSY----TLSAKCLRNLLLFGDVRQNVTFVGFAEEPYRMTLFSKGQEA 1252
Query: 911 NWMSAVEIL--DDDIY-LGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFR 967
+SA + L +++Y + A+ + NL + + E RL G++H+G +
Sbjct: 1253 LNVSAADFLVQGENLYFVVADTSGNLRLLAYDPENPESHSGERLVTRGDFHIGNVITAMT 1312
Query: 968 HGSLVMRLPDSDVGQIPTVIFGTV----NGVIGVIASLPHEQYLFLEKLQTNLRKVIKGV 1023
+ +++ G F V +G + ++ + Y L +Q L + +
Sbjct: 1313 ILPKEKKHQNAEYGYDTGDDFSCVMVNSDGGLQMLVPISDRVYRRLNIIQNYLANRVNTI 1372
Query: 1024 GGLNHEQWRSFNNEKK-TVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVE 1082
GGLN + +R + T + LDG LI+ F +S E++ V V + +
Sbjct: 1373 GGLNPKSYRLITSPSNLTNPTRRILDGMLIDYFTYMSVAHRHEMAHKCGVPVSTIMNDLV 1432
Query: 1083 EL 1084
EL
Sbjct: 1433 EL 1434
Score = 81 (33.6 bits), Expect = 2.0e-12, Sum P(6) = 2.0e-12
Identities = 25/100 (25%), Positives = 44/100 (44%)
Query: 50 LQPMLDVPIYGRIATLELFRPHGE-AQDFLFIATERYKFCVLQWDAESSELITRAMG--- 105
L+ + V ++G I + + G D L + T+ K L+WD +S +T ++
Sbjct: 92 LRLVSQVKVFGTITEISALKGKGSNGCDLLIMLTDYAKVSTLEWDMQSQSFVTNSLHYYE 151
Query: 106 DV-SDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPF 144
DV S I Q+ ++DPD L + +IP+
Sbjct: 152 DVKSSNICSSHTPTQL-LVDPDSDCCLLRFLTDMMAIIPY 190
Score = 76 (31.8 bits), Expect = 2.0e-12, Sum P(6) = 2.0e-12
Identities = 27/92 (29%), Positives = 45/92 (48%)
Query: 162 QVLDIKFLYGCAKPTIVVLYQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLI- 220
++LD+KFLYG +PT+ +LY + + T + L+ KD V +L+ A +I
Sbjct: 231 RILDVKFLYGYREPTLAILYSPEQTS----TVTLPLR-KDTVLFSLVTLDLEQRASAVIT 285
Query: 221 -----P--------VPPPLCGVLIIGEETIVY 239
P +P PL G L++G ++Y
Sbjct: 286 TIQSLPYDIYASVSIPTPLGGSLLLGGNELIY 317
Score = 59 (25.8 bits), Expect = 2.0e-12, Sum P(6) = 2.0e-12
Identities = 19/78 (24%), Positives = 33/78 (42%)
Query: 339 VEVLERYVNLGPIVDFCV--------VDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINE 390
+E+ + N+GPI DF V + G ++V +GA G L + R I
Sbjct: 490 LEICDVLTNIGPITDFAVGKAGSYSYFPQDNHGPLELVGTAGADGAGGLVVFRRNIFPLI 549
Query: 391 QASVELQGIKGMWSLRSS 408
+ G + +W++ S
Sbjct: 550 AGEFQFDGCEALWTVSIS 567
Score = 44 (20.5 bits), Expect = 2.0e-12, Sum P(6) = 2.0e-12
Identities = 28/126 (22%), Positives = 56/126 (44%)
Query: 393 SVELQG-IKGMWS-LRSSTDDP-FDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQ 449
+V + G ++ M S +++ +P +T+LV+S E+ I F ++
Sbjct: 563 TVSISGKLRNMKSRIQAQYSNPELETYLVLSKEKESFIFLAG--ETFDEVQHSDFSKDSK 620
Query: 450 TLFCHDAIYN-QLVQVTSGSVRLVSSTSR--ELRNEWKSPPGYSVNVATANASQVLLATG 506
TL + ++VQ+ S+R+ S R +L N K V+ + + +++ G
Sbjct: 621 TLNVGSLLSGMRMVQICPTSLRVYDSNLRLTQLFNFSKKQ--IVVSTSICDPCIIVVFLG 678
Query: 507 GGHLVY 512
GG +Y
Sbjct: 679 GGIALY 684
Score = 43 (20.2 bits), Expect = 2.0e-12, Sum P(6) = 2.0e-12
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 14 TNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQ 51
T + ++ G FTS NL+++K +HL + +Q
Sbjct: 12 TVIKNAVQGQFTSLVSNNLVVSKVN--SLHLFEIEKIQ 47
>SGD|S000004513 [details] [associations]
symbol:RSE1 "Protein involved in pre-mRNA splicing"
species:4932 "Saccharomyces cerevisiae" [GO:0005686 "U2 snRNP"
evidence=IDA;IPI] [GO:0000245 "spliceosomal complex assembly"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IGI;IMP;IPI] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030620 "U2 snRNA binding" evidence=IPI]
[GO:0071004 "U2-type prespliceosome" evidence=IDA]
InterPro:IPR004871 Pfam:PF03178 SGD:S000004513 EMBL:BK006946
GO:GO:0007049 EMBL:Z47816 GO:GO:0000245 GO:GO:0005686 GO:GO:0071004
GeneTree:ENSGT00530000063396 GO:GO:0030620 KO:K12830
OrthoDB:EOG4FR40R PIR:S50943 RefSeq:NP_013663.1
ProteinModelPortal:Q04693 DIP:DIP-856N IntAct:Q04693
MINT:MINT-368995 STRING:Q04693 PaxDb:Q04693 PeptideAtlas:Q04693
EnsemblFungi:YML049C GeneID:854956 KEGG:sce:YML049C CYGD:YML049c
eggNOG:KOG1898 HOGENOM:HOG000066036 OMA:DIHESVT NextBio:978033
Genevestigator:Q04693 GermOnline:YML049C Uniprot:Q04693
Length = 1361
Score = 120 (47.3 bits), Expect = 6.3e-11, Sum P(4) = 6.3e-11
Identities = 62/323 (19%), Positives = 135/323 (41%)
Query: 328 LNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIG 387
L +P K + +L + +NL P + +V + + + + + + N +
Sbjct: 464 LVFEPSIKLQNLSILSQQLNLNPSIKSQIVS-----DSPLSIATKHFTNNKIITLTNAVN 518
Query: 388 INEQASVELQ-GIKGMWSLRS-STDDPFDTFLVVSFISETRILAMN---LXXXXXXXXXX 442
+ S L +W + +T +T L ++F +T IL ++ +
Sbjct: 519 YSNLISTSLPPNATKLWLIPDPATTGDNNTLLFITFPKKTMILQIDNESMEELTPDEATR 578
Query: 443 GFCSQTQTLFCHDAIY--NQLVQVTSGSVRLVSSTSRE-LRNE--WKSPPGYSVNVATAN 497
+Q H + + ++QV + +R + T + N+ W P G + AT++
Sbjct: 579 SAFKLSQDTTIHTCLMGSHSIIQVCTAELRHIVPTGKSRYSNKLTWVPPAGIRIVCATSS 638
Query: 498 ASQVLLATGGGHLVYLEI---GDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGM 554
+Q++++ LVY +I D ++ H +L+ S + I ++ ++ + A+
Sbjct: 639 KTQLIISLSNYELVYFKIDVSSDSLIELTTHPELDTMPSKV---AIVQDTQHADLLAIAD 695
Query: 555 WTDISVRIFSLPD-----LNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFL 609
+ ++I SL D L +I+ + + +I ++ + G L L +G + F
Sbjct: 696 -NEGMIKIMSLKDQKEDFLTVISLQLVSEKISDMIMVRDSSIGQLNLHVGLENGVYMKFH 754
Query: 610 LNMKTGELTDRKKVSLGTQPITL 632
+ G TD K+ LG +P++L
Sbjct: 755 IGDVDGSFTDIKRRFLGLKPVSL 777
Score = 81 (33.6 bits), Expect = 6.3e-11, Sum P(4) = 6.3e-11
Identities = 19/61 (31%), Positives = 37/61 (60%)
Query: 1025 GLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTM-NVSVEELCKRVEE 1083
G +H+++RS+ + V +DGDL E+FL LS + ++K + +V VE++ + + E
Sbjct: 1301 GRDHQEYRSYYAPVRKV-----IDGDLCENFLRLSLNEQEFLAKNLKSVQVEDIIQTINE 1355
Query: 1084 L 1084
+
Sbjct: 1356 V 1356
Score = 80 (33.2 bits), Expect = 6.3e-11, Sum P(4) = 6.3e-11
Identities = 31/133 (23%), Positives = 62/133 (46%)
Query: 813 LQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLY----KWMLRDDGTRELQSECGHHGHI 868
++L+ + E ++++ F LL A+ I LY K +LR T+ S I
Sbjct: 1019 IELLHQTEIISPIHAMLKFKNFLLTAMGSTIVLYGLGKKQLLRRSVTQTPVSIT----KI 1074
Query: 869 LALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAE 928
++++ Q + + VGD+ +S++L I+ D ++ ++ LD+ +GA+
Sbjct: 1075 VSMH-QWNYERLAVGDIHESVTLFIWDPAGNVFIPYVDDSVKRHVTVLKFLDEATVIGAD 1133
Query: 929 NNFNLFTVRKNSE 941
N +T+R E
Sbjct: 1134 RYGNAWTLRSPPE 1146
Score = 63 (27.2 bits), Expect = 6.3e-11, Sum P(4) = 6.3e-11
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 3 IWNYVVTAHKPTNVTHSCVGNFT-----SPQELN-LIIAKCTRIEIH 43
++ Y +T K TN HSC+G+F S +E + L +A T +E++
Sbjct: 58 LYLYHLTLKKQTNFVHSCIGHFVDLEAGSKREQSQLCVATETHLELY 104
Score = 37 (18.1 bits), Expect = 1.0e-06, Sum P(4) = 1.0e-06
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 902 EERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRK 938
EE A WMS V ++ N++T+R+
Sbjct: 805 EEEINSSGAKWMSCVVCHSSSTWVSYTWK-NVWTIRQ 840
>ASPGD|ASPL0000050546 [details] [associations]
symbol:AN1413 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004871
Pfam:PF03178 GO:GO:0005634 EMBL:BN001307 GO:GO:0006397
GO:GO:0003723 eggNOG:COG5161 KO:K14401 EMBL:AACD01000022
RefSeq:XP_659017.1 EnsemblFungi:CADANIAT00008024 GeneID:2875502
KEGG:ani:AN1413.2 HOGENOM:HOG000048586 OMA:HNDRIFQ
OrthoDB:EOG451HZS Uniprot:Q5BDG7
Length = 1339
Score = 168 (64.2 bits), Expect = 2.4e-09, Sum P(6) = 2.4e-09
Identities = 69/291 (23%), Positives = 135/291 (46%)
Query: 812 KLQLIAEKETKGAVYSLNAFNGK--LLAAINQKIQLYKWMLRDDGTRELQSECGHHGHIL 869
+L+LI ++ KGAV +L+ G+ L+AA QK + L++DG+ L +
Sbjct: 1047 RLKLIGKEPVKGAVTALSEIGGQGFLIAAQGQKSMVRG--LKEDGSL-LPVAFMDMQCFV 1103
Query: 870 ALYVQTRGD-FIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDD--IYLG 926
++ + +G + GD +K + Y E + A+D + + A + L D +++
Sbjct: 1104 SVIKELKGTGMCIFGDAVKGLWFAGYSEEPYKMSLFAKDLDYLEVLAADFLPDGNKLFIV 1163
Query: 927 -AENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFR--HGSLVMR---LPDSDV 980
A+++ NL+ ++ + E +L ++H G F + +LV + SD
Sbjct: 1164 VADSDCNLYVLQYDPEDPNSSNGDKLLNRSKFHTGNFASTVTLLPRTLVSSERAMSGSDK 1223
Query: 981 GQIPT------VIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSF 1034
I V+ + NG IG++ +P E Y L LQ+ L ++ GLN +R+
Sbjct: 1224 MDIDNTAPLHQVLVTSHNGSIGLVTCVPEESYRRLSALQSQLTNTLEHPCGLNPRAYRAV 1283
Query: 1035 NNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELT 1085
++ + LD +L+ +LD+S+ R EI+ + + E+ +E ++
Sbjct: 1284 ESDASA--GRGMLDSNLLLQYLDMSKQRKAEIAGRVGATEWEIRADLEAIS 1332
Score = 59 (25.8 bits), Expect = 2.4e-09, Sum P(6) = 2.4e-09
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 13 PTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPI 58
PT VTH+ F S NLI+A+ + ++I L L LD +
Sbjct: 10 PTGVTHALAVPFLSATANNLIVARTSLLQIFSLRDVSLSA-LDTEV 54
Score = 56 (24.8 bits), Expect = 2.4e-09, Sum P(6) = 2.4e-09
Identities = 21/85 (24%), Positives = 36/85 (42%)
Query: 164 LDIKFLYGCAKPTIVVLYQDNK-------DARHVKTYEVALKDKDFVEGPW--SQNNLDN 214
+ + FLY +PT +LY + + V Y V D + S L +
Sbjct: 231 ISLAFLYEYREPTFGILYSQVATSHALLHERKDVVFYTVITLDLEQRASTTLLSVTRLPS 290
Query: 215 GADLLIPVPPPLCGVLIIGEETIVY 239
++ +PPP+ G L+IG +V+
Sbjct: 291 DLFKVVALPPPVGGSLLIGSNELVH 315
Score = 45 (20.9 bits), Expect = 2.4e-09, Sum P(6) = 2.4e-09
Identities = 9/41 (21%), Positives = 21/41 (51%)
Query: 706 IRSIPLGEHPRRICHQEQSRTFAI--CSLKNQSCAEESEMH 744
+R++P+G+ ++ + S T+ + C E+ E+H
Sbjct: 907 MRTVPIGQQIDKLTYVSASDTYVLGTCQRCEFRLPEDDELH 947
Score = 44 (20.5 bits), Expect = 3.0e-09, Sum P(6) = 3.0e-09
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 791 VLPEENEPTKGRILVFIVEDGKLQLIAEKE 820
+L ++ +P K VF++ED KL+ I E
Sbjct: 574 ILSKQEKPDKEESEVFVLED-KLRPITAPE 602
Score = 40 (19.1 bits), Expect = 2.4e-09, Sum P(6) = 2.4e-09
Identities = 20/80 (25%), Positives = 30/80 (37%)
Query: 76 DFLFIATERYKFCVLQWDAESSELITRAMG--DVSDRIGRP--TDNGQIGII---DPDCR 128
D + +A K +++WD E L T ++ + D P +D G I DP R
Sbjct: 94 DAVLVAFRDAKLSLVEWDPERYGLSTISIHYYERDDMTRSPWASDLSTCGSILSADPGSR 153
Query: 129 LIGLHLYDGLFKVIPFDNKG 148
+IPF G
Sbjct: 154 CAIFQFGARSLAIIPFHQPG 173
Score = 40 (19.1 bits), Expect = 5.9e-09, Sum P(5) = 5.9e-09
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 720 HQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQ 752
+ +Q R + I S + + EESE+ FV L+D+
Sbjct: 565 NNDQKRDYVILSKQEKPDKEESEV-FV--LEDK 594
Score = 39 (18.8 bits), Expect = 2.4e-09, Sum P(6) = 2.4e-09
Identities = 12/62 (19%), Positives = 29/62 (46%)
Query: 361 RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMW--SLRSSTDDPFDTFLV 418
+ G ++V G+ + G++ I++ + AS+ +W SL +D +++
Sbjct: 515 KDGVLELVAAQGSDEGGTMVIMKREVDPYLVASMAADTANSLWTVSLLPDNNDQKRDYVI 574
Query: 419 VS 420
+S
Sbjct: 575 LS 576
>UNIPROTKB|F1S419 [details] [associations]
symbol:LOC100512659 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004871
Pfam:PF03178 GO:GO:0005634 GO:GO:0003676
GeneTree:ENSGT00530000063396 EMBL:CU915803 EMBL:AEMK01191757
Ensembl:ENSSSCT00000003019 OMA:SHEVIYS Uniprot:F1S419
Length = 319
Score = 164 (62.8 bits), Expect = 7.5e-09, P = 7.5e-09
Identities = 64/283 (22%), Positives = 127/283 (44%)
Query: 746 VRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYC-VGTAY-VLPEENEPTKGRI 803
+R+++ + L+ E S+ C FS+ + +Y VG A ++ G +
Sbjct: 44 IRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTGDDWYVLVGVAKDLILNPRSVAGGFV 103
Query: 804 LVF-IVEDG-KLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSE 861
+ +V +G KL+ + + + ++ F G++L + + +++Y D G ++L +
Sbjct: 104 YTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVY-----DLGKKKLLRK 158
Query: 862 CGHHGHILALYV---QTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEI 918
C + HI A Y+ QT G ++V D+ +S + YK E + A D W++ +
Sbjct: 159 C-ENKHI-ANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASL 216
Query: 919 LDDDIYLGAENNFNLFTVR--KNSEGATDEE---------RGRLEVVGEYHLGEFVNRFR 967
LD D GA+ N+ VR N+ DE+ RG L G E + +
Sbjct: 217 LDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLN--GASQKAEVIMNYH 274
Query: 968 HGSLVMRLPDSDV--GQIPTVIFGTVNGVIGVIASLPHEQYLF 1008
G V+ L + + G ++++ T++G IG++ + ++
Sbjct: 275 VGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEVIY 317
>CGD|CAL0004251 [details] [associations]
symbol:orf19.2760 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004871
Pfam:PF03178 CGD:CAL0004251 GO:GO:0005634 GO:GO:0042493
GO:GO:0006397 GO:GO:0003723 EMBL:AACQ01000023 EMBL:AACQ01000025
RefSeq:XP_720278.1 RefSeq:XP_720279.1 RefSeq:XP_720280.1
RefSeq:XP_720510.1 STRING:Q5AFT3 GeneID:3637848 GeneID:3638158
GeneID:3638159 GeneID:3638160 KEGG:cal:CaO19.10274
KEGG:cal:CaO19.10275 KEGG:cal:CaO19.10276 KEGG:cal:CaO19.2760
eggNOG:COG5161 KO:K14401 Uniprot:Q5AFT3
Length = 1420
Score = 86 (35.3 bits), Expect = 1.4e-07, Sum P(6) = 1.4e-07
Identities = 31/122 (25%), Positives = 62/122 (50%)
Query: 812 KLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILAL 871
K + I ++ET+GA+ S+ +G+ L + QK+ + L+DDGT + +
Sbjct: 1122 KFKEIFKEETRGAITSICELSGRFLVSQGQKVIVRD--LQDDGTVPVAFL---DTPVYVS 1176
Query: 872 YVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEIL--DDDIY-LGAE 928
++ G+ +++GDL+K L+ + E + +D + + + DD+I+ L A+
Sbjct: 1177 ESKSFGNLLILGDLLKGCWLVGFDAEPFRMIMLGKDTQHISVECADFIINDDEIFVLVAD 1236
Query: 929 NN 930
NN
Sbjct: 1237 NN 1238
Score = 86 (35.3 bits), Expect = 1.4e-07, Sum P(6) = 1.4e-07
Identities = 35/148 (23%), Positives = 67/148 (45%)
Query: 13 PTNVTHSCVG-NFTSPQELNLIIAKCTRIEIH---------LLTPQGLQPMLD-VPIYGR 61
P+ V ++CVG NF S + NLI+ K + ++I + PQ ++D + G
Sbjct: 10 PSKV-NNCVGCNFISSTKKNLIVGKGSLLQIFETIQLKQSTINKPQYRLKLIDQFKLQGT 68
Query: 62 IATLELFRP-HGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIGRPT-DNGQ 119
I L+ R D+L ++T+ KF +++WD + + T ++ I T +
Sbjct: 69 ITDLKSIRTIENPNLDYLMVSTKYAKFSIIKWDHHLNTIATVSLHYYEHCIQNSTFEKLA 128
Query: 120 IG--IIDPDCRLIGLHLYDGLFKVIPFD 145
+ I++P + + L +PF+
Sbjct: 129 VSELILEPTYNSVSCLRFKNLLCFLPFE 156
Score = 76 (31.8 bits), Expect = 1.4e-07, Sum P(6) = 1.4e-07
Identities = 26/98 (26%), Positives = 48/98 (48%)
Query: 163 VLDIKFLYGCAKPTIVVLY--QDNKDARHVKT-----YEVALKDKDFVE--GPWSQNNLD 213
V+D++FL+ +PTI VL Q+ +K+ ++V D + + +NL
Sbjct: 234 VVDMQFLHNYREPTIAVLSSKQEVWAGNLIKSKDNIQFQVLTLDLNLKSTISVFKIDNLP 293
Query: 214 NGADLLIPVPPPLCGVLIIGEETIVYC-SANAFKAIPI 250
D +IP+P PL G L++G +++ + K I +
Sbjct: 294 YEIDRIIPLPSPLNGTLLVGCNELIHVDNGGVLKRIAV 331
Score = 51 (23.0 bits), Expect = 1.4e-07, Sum P(6) = 1.4e-07
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 1035 NNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN 1071
NNE T K LD DLI SF LS R ++ ++
Sbjct: 1365 NNETNT---KPILDYDLIRSFTKLSDDRKRNLANKVS 1398
Score = 50 (22.7 bits), Expect = 1.4e-07, Sum P(6) = 1.4e-07
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 306 ISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGS 337
++ LD +++I +S G+S LI++ + +K S
Sbjct: 414 VAILDKNMLFIANSNGNSPLIQVRYRDSSKTS 445
Score = 46 (21.3 bits), Expect = 1.4e-07, Sum P(6) = 1.4e-07
Identities = 17/77 (22%), Positives = 32/77 (41%)
Query: 677 NSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKN-- 734
N F D+ A+ EL + + L ++ + +GE + I + E S T + + K
Sbjct: 937 NGLIFLDNQQNARICELPLDFNYEFN-LPMKHVDIGESIKSIAYHETSDTVVLSTFKQIP 995
Query: 735 QSCAEESEMHFVRLLDD 751
C +E ++ D
Sbjct: 996 YDCLDEEGKPIAGIIKD 1012
Score = 37 (18.1 bits), Expect = 2.2e-06, Sum P(6) = 2.2e-06
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 288 KVTGLKIELLGETSIASTISYLDN 311
K+ + I ++ I + + +LDN
Sbjct: 921 KIAAMSISAFSDSKIKNGLIFLDN 944
>UNIPROTKB|Q5AFT3 [details] [associations]
symbol:CFT1 "Protein CFT1" species:237561 "Candida albicans
SC5314" [GO:0042493 "response to drug" evidence=IMP]
InterPro:IPR004871 Pfam:PF03178 CGD:CAL0004251 GO:GO:0005634
GO:GO:0042493 GO:GO:0006397 GO:GO:0003723 EMBL:AACQ01000023
EMBL:AACQ01000025 RefSeq:XP_720278.1 RefSeq:XP_720279.1
RefSeq:XP_720280.1 RefSeq:XP_720510.1 STRING:Q5AFT3 GeneID:3637848
GeneID:3638158 GeneID:3638159 GeneID:3638160 KEGG:cal:CaO19.10274
KEGG:cal:CaO19.10275 KEGG:cal:CaO19.10276 KEGG:cal:CaO19.2760
eggNOG:COG5161 KO:K14401 Uniprot:Q5AFT3
Length = 1420
Score = 86 (35.3 bits), Expect = 1.4e-07, Sum P(6) = 1.4e-07
Identities = 31/122 (25%), Positives = 62/122 (50%)
Query: 812 KLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILAL 871
K + I ++ET+GA+ S+ +G+ L + QK+ + L+DDGT + +
Sbjct: 1122 KFKEIFKEETRGAITSICELSGRFLVSQGQKVIVRD--LQDDGTVPVAFL---DTPVYVS 1176
Query: 872 YVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEIL--DDDIY-LGAE 928
++ G+ +++GDL+K L+ + E + +D + + + DD+I+ L A+
Sbjct: 1177 ESKSFGNLLILGDLLKGCWLVGFDAEPFRMIMLGKDTQHISVECADFIINDDEIFVLVAD 1236
Query: 929 NN 930
NN
Sbjct: 1237 NN 1238
Score = 86 (35.3 bits), Expect = 1.4e-07, Sum P(6) = 1.4e-07
Identities = 35/148 (23%), Positives = 67/148 (45%)
Query: 13 PTNVTHSCVG-NFTSPQELNLIIAKCTRIEIH---------LLTPQGLQPMLD-VPIYGR 61
P+ V ++CVG NF S + NLI+ K + ++I + PQ ++D + G
Sbjct: 10 PSKV-NNCVGCNFISSTKKNLIVGKGSLLQIFETIQLKQSTINKPQYRLKLIDQFKLQGT 68
Query: 62 IATLELFRP-HGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIGRPT-DNGQ 119
I L+ R D+L ++T+ KF +++WD + + T ++ I T +
Sbjct: 69 ITDLKSIRTIENPNLDYLMVSTKYAKFSIIKWDHHLNTIATVSLHYYEHCIQNSTFEKLA 128
Query: 120 IG--IIDPDCRLIGLHLYDGLFKVIPFD 145
+ I++P + + L +PF+
Sbjct: 129 VSELILEPTYNSVSCLRFKNLLCFLPFE 156
Score = 76 (31.8 bits), Expect = 1.4e-07, Sum P(6) = 1.4e-07
Identities = 26/98 (26%), Positives = 48/98 (48%)
Query: 163 VLDIKFLYGCAKPTIVVLY--QDNKDARHVKT-----YEVALKDKDFVE--GPWSQNNLD 213
V+D++FL+ +PTI VL Q+ +K+ ++V D + + +NL
Sbjct: 234 VVDMQFLHNYREPTIAVLSSKQEVWAGNLIKSKDNIQFQVLTLDLNLKSTISVFKIDNLP 293
Query: 214 NGADLLIPVPPPLCGVLIIGEETIVYC-SANAFKAIPI 250
D +IP+P PL G L++G +++ + K I +
Sbjct: 294 YEIDRIIPLPSPLNGTLLVGCNELIHVDNGGVLKRIAV 331
Score = 51 (23.0 bits), Expect = 1.4e-07, Sum P(6) = 1.4e-07
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 1035 NNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN 1071
NNE T K LD DLI SF LS R ++ ++
Sbjct: 1365 NNETNT---KPILDYDLIRSFTKLSDDRKRNLANKVS 1398
Score = 50 (22.7 bits), Expect = 1.4e-07, Sum P(6) = 1.4e-07
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 306 ISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGS 337
++ LD +++I +S G+S LI++ + +K S
Sbjct: 414 VAILDKNMLFIANSNGNSPLIQVRYRDSSKTS 445
Score = 46 (21.3 bits), Expect = 1.4e-07, Sum P(6) = 1.4e-07
Identities = 17/77 (22%), Positives = 32/77 (41%)
Query: 677 NSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKN-- 734
N F D+ A+ EL + + L ++ + +GE + I + E S T + + K
Sbjct: 937 NGLIFLDNQQNARICELPLDFNYEFN-LPMKHVDIGESIKSIAYHETSDTVVLSTFKQIP 995
Query: 735 QSCAEESEMHFVRLLDD 751
C +E ++ D
Sbjct: 996 YDCLDEEGKPIAGIIKD 1012
Score = 37 (18.1 bits), Expect = 2.2e-06, Sum P(6) = 2.2e-06
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 288 KVTGLKIELLGETSIASTISYLDN 311
K+ + I ++ I + + +LDN
Sbjct: 921 KIAAMSISAFSDSKIKNGLIFLDN 944
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.138 0.405 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1088 1066 0.00084 123 3 11 22 0.39 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 79
No. of states in DFA: 627 (67 KB)
Total size of DFA: 488 KB (2227 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 88.40u 0.09s 88.49t Elapsed: 00:00:05
Total cpu time: 88.44u 0.09s 88.53t Elapsed: 00:00:05
Start: Tue May 21 16:14:00 2013 End: Tue May 21 16:14:05 2013