BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001387
(1088 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A0B|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|C Chain C, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
Length = 1159
Score = 1176 bits (3043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/1145 (51%), Positives = 783/1145 (68%), Gaps = 67/1145 (5%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+IA
Sbjct: 22 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIA 81
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIG 121
+ELFRP GE++D LFI T +Y C+L++ ES ++ITRA G+V DRIGRP++ G IG
Sbjct: 82 VMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIG 141
Query: 122 IIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181
IIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC PTI +Y
Sbjct: 142 IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVY 201
Query: 182 QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS 241
QD + RHVKTYEV+L++K+F +GPW Q N++ A ++I VP P G +IIG+E+I Y +
Sbjct: 202 QDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPSPFGGAIIIGQESITYHN 260
Query: 242 ANAFKAIP---IRPSITKAYGRVDADGSRYXXXXXXXXXXXXVITHEKE-----KVTGLK 293
+ + AI I+ S + RVD +GSRY ++ E++ + L+
Sbjct: 261 GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR 320
Query: 294 IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVD 353
+ELLGETSIA ++YLDN VV++GS GDSQL+KLN+ + +GSYV +E + NLGPIVD
Sbjct: 321 VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVD 380
Query: 354 FCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPF 413
CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS +
Sbjct: 381 MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRET 440
Query: 414 DTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVS 473
D LV+SF+ +TR+L +N GF QT FC + + QL+Q+TS SVRLVS
Sbjct: 441 DDTLVLSFVGQTRVLMLN-GEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 499
Query: 474 STSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIS 533
+ L +EWK P +++VA+ N+SQV++A G L YL+I L ++ H ++E+E++
Sbjct: 500 QEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRA-LYYLQIHPQELRQISHTEMEHEVA 558
Query: 534 CLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGI 593
CLDI P+G++ S + A+G+WTDIS RI LP L+ KE LGGEIIPRS+L+ FE
Sbjct: 559 CLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESS 618
Query: 594 SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI 653
YLLCALGDG L F LN++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTVI
Sbjct: 619 HYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVI 678
Query: 654 YSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE 713
YSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL E
Sbjct: 679 YSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYE 738
Query: 714 HPRRICHQEQSRTFAICSLK---------------------------------------N 734
PR+IC+QE S+ F + S +
Sbjct: 739 SPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHE 798
Query: 735 QSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPE 794
S EE E+H + ++D TFE + + EY S++SC D N Y+ VGTA V PE
Sbjct: 799 TSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPE 858
Query: 795 ENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDG 854
E EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN ++LY+W
Sbjct: 859 EAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTE--- 915
Query: 855 TRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMS 914
+EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG EE ARD+N NWMS
Sbjct: 916 -KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMS 974
Query: 915 AVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR 974
AVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEFVN F HGSLVM+
Sbjct: 975 AVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ 1034
Query: 975 -LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRS 1033
L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK VG + H WRS
Sbjct: 1035 NLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRS 1094
Query: 1034 FNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN----------VSVEELCKRVEE 1083
F+ E+KT A F+DGDLIESFLD+SR +M E+ + + ++L K VEE
Sbjct: 1095 FHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEE 1154
Query: 1084 LTRLH 1088
LTR+H
Sbjct: 1155 LTRIH 1159
>pdb|4A11|A Chain A, Structure Of The Hsddb1-Hscsa Complex
pdb|4A0K|C Chain C, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 1159
Score = 1176 bits (3043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/1145 (51%), Positives = 783/1145 (68%), Gaps = 67/1145 (5%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+IA
Sbjct: 22 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIA 81
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIG 121
+ELFRP GE++D LFI T +Y C+L++ ES ++ITRA G+V DRIGRP++ G IG
Sbjct: 82 VMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIG 141
Query: 122 IIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181
IIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC PTI +Y
Sbjct: 142 IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVY 201
Query: 182 QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS 241
QD + RHVKTYEV+L++K+F +GPW Q N++ A ++I VP P G +IIG+E+I Y +
Sbjct: 202 QDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHN 260
Query: 242 ANAFKAIP---IRPSITKAYGRVDADGSRYXXXXXXXXXXXXVITHEKE-----KVTGLK 293
+ + AI I+ S + RVD +GSRY ++ E++ + L+
Sbjct: 261 GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR 320
Query: 294 IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVD 353
+ELLGETSIA ++YLDN VV++GS GDSQL+KLN+ + +GSYV +E + NLGPIVD
Sbjct: 321 VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVD 380
Query: 354 FCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPF 413
CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS +
Sbjct: 381 MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRET 440
Query: 414 DTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVS 473
D LV+SF+ +TR+L +N GF QT FC + + QL+Q+TS SVRLVS
Sbjct: 441 DDTLVLSFVGQTRVLMLN-GEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 499
Query: 474 STSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIS 533
+ L +EWK P +++VA+ N+SQV++A G L YL+I L ++ H ++E+E++
Sbjct: 500 QEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRA-LYYLQIHPQELRQISHTEMEHEVA 558
Query: 534 CLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGI 593
CLDI P+G++ S + A+G+WTDIS RI LP L+ KE LGGEIIPRS+L+ FE
Sbjct: 559 CLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESS 618
Query: 594 SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI 653
YLLCALGDG L F LN++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTVI
Sbjct: 619 HYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVI 678
Query: 654 YSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE 713
YSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL E
Sbjct: 679 YSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYE 738
Query: 714 HPRRICHQEQSRTFAICSLK---------------------------------------N 734
PR+IC+QE S+ F + S +
Sbjct: 739 SPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHE 798
Query: 735 QSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPE 794
S EE E+H + ++D TFE + + EY S++SC D N Y+ VGTA V PE
Sbjct: 799 TSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPE 858
Query: 795 ENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDG 854
E EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN ++LY+W
Sbjct: 859 EAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTE--- 915
Query: 855 TRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMS 914
+EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG EE ARD+N NWMS
Sbjct: 916 -KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMS 974
Query: 915 AVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR 974
AVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEFVN F HGSLVM+
Sbjct: 975 AVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ 1034
Query: 975 -LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRS 1033
L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK VG + H WRS
Sbjct: 1035 NLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRS 1094
Query: 1034 FNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN----------VSVEELCKRVEE 1083
F+ E+KT A F+DGDLIESFLD+SR +M E+ + + ++L K VEE
Sbjct: 1095 FHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEE 1154
Query: 1084 LTRLH 1088
LTR+H
Sbjct: 1155 LTRIH 1159
>pdb|4A0A|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
Length = 1159
Score = 1176 bits (3043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/1145 (51%), Positives = 783/1145 (68%), Gaps = 67/1145 (5%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+IA
Sbjct: 22 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIA 81
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIG 121
+ELFRP GE++D LFI T +Y C+L++ ES ++ITRA G+V DRIGRP++ G IG
Sbjct: 82 VMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIG 141
Query: 122 IIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181
IIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC PTI +Y
Sbjct: 142 IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVY 201
Query: 182 QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS 241
QD + RHVKTYEV+L++K+F +GPW Q N++ A ++I VP P G +IIG+E+I Y +
Sbjct: 202 QDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPKPFGGAIIIGQESITYHN 260
Query: 242 ANAFKAIP---IRPSITKAYGRVDADGSRYXXXXXXXXXXXXVITHEKE-----KVTGLK 293
+ + AI I+ S + RVD +GSRY ++ E++ + L+
Sbjct: 261 GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR 320
Query: 294 IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVD 353
+ELLGETSIA ++YLDN VV++GS GDSQL+KLN+ + +GSYV +E + NLGPIVD
Sbjct: 321 VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVD 380
Query: 354 FCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPF 413
CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS +
Sbjct: 381 MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRET 440
Query: 414 DTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVS 473
D LV+SF+ +TR+L +N GF QT FC + + QL+Q+TS SVRLVS
Sbjct: 441 DDTLVLSFVGQTRVLMLN-GEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 499
Query: 474 STSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIS 533
+ L +EWK P +++VA+ N+SQV++A G L YL+I L ++ H ++E+E++
Sbjct: 500 QEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRA-LYYLQIHPQELRQISHTEMEHEVA 558
Query: 534 CLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGI 593
CLDI P+G++ S + A+G+WTDIS RI LP L+ KE LGGEIIPRS+L+ FE
Sbjct: 559 CLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESS 618
Query: 594 SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI 653
YLLCALGDG L F LN++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTVI
Sbjct: 619 HYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVI 678
Query: 654 YSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE 713
YSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL E
Sbjct: 679 YSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYE 738
Query: 714 HPRRICHQEQSRTFAICSLK---------------------------------------N 734
PR+IC+QE S+ F + S +
Sbjct: 739 SPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHE 798
Query: 735 QSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPE 794
S EE E+H + ++D TFE + + EY S++SC D N Y+ VGTA V PE
Sbjct: 799 TSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPE 858
Query: 795 ENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDG 854
E EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN ++LY+W
Sbjct: 859 EAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTE--- 915
Query: 855 TRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMS 914
+EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG EE ARD+N NWMS
Sbjct: 916 -KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMS 974
Query: 915 AVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR 974
AVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEFVN F HGSLVM+
Sbjct: 975 AVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ 1034
Query: 975 -LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRS 1033
L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK VG + H WRS
Sbjct: 1035 NLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRS 1094
Query: 1034 FNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN----------VSVEELCKRVEE 1083
F+ E+KT A F+DGDLIESFLD+SR +M E+ + + ++L K VEE
Sbjct: 1095 FHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEE 1154
Query: 1084 LTRLH 1088
LTR+H
Sbjct: 1155 LTRIH 1159
>pdb|3E0C|A Chain A, Crystal Structure Of Dna Damage-Binding Protein 1(Ddb1)
Length = 1140
Score = 1176 bits (3042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/1145 (51%), Positives = 783/1145 (68%), Gaps = 67/1145 (5%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+IA
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIA 62
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIG 121
+ELFRP GE++D LFI T +Y C+L++ ES ++ITRA G+V DRIGRP++ G IG
Sbjct: 63 VMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIG 122
Query: 122 IIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181
IIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC PTI +Y
Sbjct: 123 IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVY 182
Query: 182 QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS 241
QD + RHVKTYEV+L++K+F +GPW Q N++ A ++I VP P G +IIG+E+I Y +
Sbjct: 183 QDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHN 241
Query: 242 ANAFKAIP---IRPSITKAYGRVDADGSRYXXXXXXXXXXXXVITHEKE-----KVTGLK 293
+ + AI I+ S + RVD +GSRY ++ E++ + L+
Sbjct: 242 GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR 301
Query: 294 IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVD 353
+ELLGETSIA ++YLDN VV++GS GDSQL+KLN+ + +GSYV +E + NLGPIVD
Sbjct: 302 VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVD 361
Query: 354 FCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPF 413
CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS +
Sbjct: 362 MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRET 421
Query: 414 DTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVS 473
D LV+SF+ +TR+L +N GF QT FC + + QL+Q+TS SVRLVS
Sbjct: 422 DDTLVLSFVGQTRVLMLN-GEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 480
Query: 474 STSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIS 533
+ L +EWK P +++VA+ N+SQV++A G L YL+I L ++ H ++E+E++
Sbjct: 481 QEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRA-LYYLQIHPQELRQISHTEMEHEVA 539
Query: 534 CLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGI 593
CLDI P+G++ S + A+G+WTDIS RI LP L+ KE LGGEIIPRS+L+ FE
Sbjct: 540 CLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESS 599
Query: 594 SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI 653
YLLCALGDG L F LN++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTVI
Sbjct: 600 HYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVI 659
Query: 654 YSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE 713
YSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL E
Sbjct: 660 YSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYE 719
Query: 714 HPRRICHQEQSRTFAICSLK---------------------------------------N 734
PR+IC+QE S+ F + S +
Sbjct: 720 SPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHE 779
Query: 735 QSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPE 794
S EE E+H + ++D TFE + + EY S++SC D N Y+ VGTA V PE
Sbjct: 780 TSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPE 839
Query: 795 ENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDG 854
E EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN ++LY+W
Sbjct: 840 EAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTE--- 896
Query: 855 TRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMS 914
+EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG EE ARD+N NWMS
Sbjct: 897 -KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMS 955
Query: 915 AVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR 974
AVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEFVN F HGSLVM+
Sbjct: 956 AVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ 1015
Query: 975 -LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRS 1033
L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK VG + H WRS
Sbjct: 1016 NLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRS 1075
Query: 1034 FNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN----------VSVEELCKRVEE 1083
F+ E+KT A F+DGDLIESFLD+SR +M E+ + + ++L K VEE
Sbjct: 1076 FHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEE 1135
Query: 1084 LTRLH 1088
LTR+H
Sbjct: 1136 LTRIH 1140
>pdb|4E54|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb)
Dimerization And Its Roles In Chromatinized Dna Repair
pdb|4E5Z|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb)
Dimerization And Its Roles In Chromatinized Dna Repair
Length = 1150
Score = 1176 bits (3042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/1145 (51%), Positives = 783/1145 (68%), Gaps = 67/1145 (5%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+IA
Sbjct: 13 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIA 72
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIG 121
+ELFRP GE++D LFI T +Y C+L++ ES ++ITRA G+V DRIGRP++ G IG
Sbjct: 73 VMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIG 132
Query: 122 IIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181
IIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC PTI +Y
Sbjct: 133 IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVY 192
Query: 182 QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS 241
QD + RHVKTYEV+L++K+F +GPW Q N++ A ++I VP P G +IIG+E+I Y +
Sbjct: 193 QDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHN 251
Query: 242 ANAFKAIP---IRPSITKAYGRVDADGSRYXXXXXXXXXXXXVITHEKE-----KVTGLK 293
+ + AI I+ S + RVD +GSRY ++ E++ + L+
Sbjct: 252 GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR 311
Query: 294 IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVD 353
+ELLGETSIA ++YLDN VV++GS GDSQL+KLN+ + +GSYV +E + NLGPIVD
Sbjct: 312 VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVD 371
Query: 354 FCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPF 413
CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS +
Sbjct: 372 MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRET 431
Query: 414 DTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVS 473
D LV+SF+ +TR+L +N GF QT FC + + QL+Q+TS SVRLVS
Sbjct: 432 DDTLVLSFVGQTRVLMLN-GEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 490
Query: 474 STSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIS 533
+ L +EWK P +++VA+ N+SQV++A G L YL+I L ++ H ++E+E++
Sbjct: 491 QEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRA-LYYLQIHPQELRQISHTEMEHEVA 549
Query: 534 CLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGI 593
CLDI P+G++ S + A+G+WTDIS RI LP L+ KE LGGEIIPRS+L+ FE
Sbjct: 550 CLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESS 609
Query: 594 SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI 653
YLLCALGDG L F LN++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTVI
Sbjct: 610 HYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVI 669
Query: 654 YSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE 713
YSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL E
Sbjct: 670 YSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYE 729
Query: 714 HPRRICHQEQSRTFAICSLK---------------------------------------N 734
PR+IC+QE S+ F + S +
Sbjct: 730 SPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHE 789
Query: 735 QSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPE 794
S EE E+H + ++D TFE + + EY S++SC D N Y+ VGTA V PE
Sbjct: 790 TSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPE 849
Query: 795 ENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDG 854
E EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN ++LY+W
Sbjct: 850 EAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTE--- 906
Query: 855 TRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMS 914
+EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG EE ARD+N NWMS
Sbjct: 907 -KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMS 965
Query: 915 AVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR 974
AVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEFVN F HGSLVM+
Sbjct: 966 AVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ 1025
Query: 975 -LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRS 1033
L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK VG + H WRS
Sbjct: 1026 NLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRS 1085
Query: 1034 FNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN----------VSVEELCKRVEE 1083
F+ E+KT A F+DGDLIESFLD+SR +M E+ + + ++L K VEE
Sbjct: 1086 FHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEE 1145
Query: 1084 LTRLH 1088
LTR+H
Sbjct: 1146 LTRIH 1150
>pdb|4A0L|A Chain A, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|C Chain C, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 1144
Score = 1176 bits (3041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/1145 (51%), Positives = 783/1145 (68%), Gaps = 67/1145 (5%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+IA
Sbjct: 7 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIA 66
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIG 121
+ELFRP GE++D LFI T +Y C+L++ ES ++ITRA G+V DRIGRP++ G IG
Sbjct: 67 VMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIG 126
Query: 122 IIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181
IIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC PTI +Y
Sbjct: 127 IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVY 186
Query: 182 QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS 241
QD + RHVKTYEV+L++K+F +GPW Q N++ A ++I VP P G +IIG+E+I Y +
Sbjct: 187 QDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHN 245
Query: 242 ANAFKAIP---IRPSITKAYGRVDADGSRYXXXXXXXXXXXXVITHEKE-----KVTGLK 293
+ + AI I+ S + RVD +GSRY ++ E++ + L+
Sbjct: 246 GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR 305
Query: 294 IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVD 353
+ELLGETSIA ++YLDN VV++GS GDSQL+KLN+ + +GSYV +E + NLGPIVD
Sbjct: 306 VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVD 365
Query: 354 FCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPF 413
CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS +
Sbjct: 366 MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRET 425
Query: 414 DTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVS 473
D LV+SF+ +TR+L +N GF QT FC + + QL+Q+TS SVRLVS
Sbjct: 426 DDTLVLSFVGQTRVLMLN-GEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 484
Query: 474 STSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIS 533
+ L +EWK P +++VA+ N+SQV++A G L YL+I L ++ H ++E+E++
Sbjct: 485 QEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRA-LYYLQIHPQELRQISHTEMEHEVA 543
Query: 534 CLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGI 593
CLDI P+G++ S + A+G+WTDIS RI LP L+ KE LGGEIIPRS+L+ FE
Sbjct: 544 CLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESS 603
Query: 594 SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI 653
YLLCALGDG L F LN++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTVI
Sbjct: 604 HYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVI 663
Query: 654 YSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE 713
YSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL E
Sbjct: 664 YSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYE 723
Query: 714 HPRRICHQEQSRTFAICSLK---------------------------------------N 734
PR+IC+QE S+ F + S +
Sbjct: 724 SPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHE 783
Query: 735 QSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPE 794
S EE E+H + ++D TFE + + EY S++SC D N Y+ VGTA V PE
Sbjct: 784 TSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPE 843
Query: 795 ENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDG 854
E EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN ++LY+W
Sbjct: 844 EAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTE--- 900
Query: 855 TRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMS 914
+EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG EE ARD+N NWMS
Sbjct: 901 -KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMS 959
Query: 915 AVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR 974
AVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEFVN F HGSLVM+
Sbjct: 960 AVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ 1019
Query: 975 -LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRS 1033
L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK VG + H WRS
Sbjct: 1020 NLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRS 1079
Query: 1034 FNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN----------VSVEELCKRVEE 1083
F+ E+KT A F+DGDLIESFLD+SR +M E+ + + ++L K VEE
Sbjct: 1080 FHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEE 1139
Query: 1084 LTRLH 1088
LTR+H
Sbjct: 1140 LTRIH 1144
>pdb|3EI1|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Photoproduct
Containing Dna-Duplex
pdb|3EI2|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|A Chain A, Structure Of The Hsddb1-Drddb2 Complex
Length = 1158
Score = 1176 bits (3041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/1145 (51%), Positives = 783/1145 (68%), Gaps = 67/1145 (5%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+IA
Sbjct: 21 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIA 80
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIG 121
+ELFRP GE++D LFI T +Y C+L++ ES ++ITRA G+V DRIGRP++ G IG
Sbjct: 81 VMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIG 140
Query: 122 IIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181
IIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC PTI +Y
Sbjct: 141 IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVY 200
Query: 182 QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS 241
QD + RHVKTYEV+L++K+F +GPW Q N++ A ++I VP P G +IIG+E+I Y +
Sbjct: 201 QDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHN 259
Query: 242 ANAFKAIP---IRPSITKAYGRVDADGSRYXXXXXXXXXXXXVITHEKE-----KVTGLK 293
+ + AI I+ S + RVD +GSRY ++ E++ + L+
Sbjct: 260 GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR 319
Query: 294 IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVD 353
+ELLGETSIA ++YLDN VV++GS GDSQL+KLN+ + +GSYV +E + NLGPIVD
Sbjct: 320 VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVD 379
Query: 354 FCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPF 413
CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS +
Sbjct: 380 MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRET 439
Query: 414 DTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVS 473
D LV+SF+ +TR+L +N GF QT FC + + QL+Q+TS SVRLVS
Sbjct: 440 DDTLVLSFVGQTRVLMLN-GEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 498
Query: 474 STSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIS 533
+ L +EWK P +++VA+ N+SQV++A G L YL+I L ++ H ++E+E++
Sbjct: 499 QEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRA-LYYLQIHPQELRQISHTEMEHEVA 557
Query: 534 CLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGI 593
CLDI P+G++ S + A+G+WTDIS RI LP L+ KE LGGEIIPRS+L+ FE
Sbjct: 558 CLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESS 617
Query: 594 SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI 653
YLLCALGDG L F LN++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTVI
Sbjct: 618 HYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVI 677
Query: 654 YSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE 713
YSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL E
Sbjct: 678 YSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYE 737
Query: 714 HPRRICHQEQSRTFAICSLK---------------------------------------N 734
PR+IC+QE S+ F + S +
Sbjct: 738 SPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHE 797
Query: 735 QSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPE 794
S EE E+H + ++D TFE + + EY S++SC D N Y+ VGTA V PE
Sbjct: 798 TSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPE 857
Query: 795 ENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDG 854
E EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN ++LY+W
Sbjct: 858 EAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTE--- 914
Query: 855 TRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMS 914
+EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG EE ARD+N NWMS
Sbjct: 915 -KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMS 973
Query: 915 AVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR 974
AVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEFVN F HGSLVM+
Sbjct: 974 AVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ 1033
Query: 975 -LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRS 1033
L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK VG + H WRS
Sbjct: 1034 NLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRS 1093
Query: 1034 FNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN----------VSVEELCKRVEE 1083
F+ E+KT A F+DGDLIESFLD+SR +M E+ + + ++L K VEE
Sbjct: 1094 FHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEE 1153
Query: 1084 LTRLH 1088
LTR+H
Sbjct: 1154 LTRIH 1158
>pdb|4A08|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
Length = 1159
Score = 1174 bits (3037), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 592/1145 (51%), Positives = 782/1145 (68%), Gaps = 67/1145 (5%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+IA
Sbjct: 22 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIA 81
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIG 121
+ELFRP GE++D LFI T +Y C+L++ ES ++ITRA G+V DRIGRP++ G IG
Sbjct: 82 VMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIG 141
Query: 122 IIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181
IIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC PTI +Y
Sbjct: 142 IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVY 201
Query: 182 QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS 241
QD + RHVKTY V+L++K+F +GPW Q N++ A ++I VP P G +IIG+E+I Y +
Sbjct: 202 QDPQ-GRHVKTYAVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHN 260
Query: 242 ANAFKAIP---IRPSITKAYGRVDADGSRYXXXXXXXXXXXXVITHEKE-----KVTGLK 293
+ + AI I+ S + RVD +GSRY ++ E++ + L+
Sbjct: 261 GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR 320
Query: 294 IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVD 353
+ELLGETSIA ++YLDN VV++GS GDSQL+KLN+ + +GSYV +E + NLGPIVD
Sbjct: 321 VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVD 380
Query: 354 FCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPF 413
CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS +
Sbjct: 381 MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRET 440
Query: 414 DTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVS 473
D LV+SF+ +TR+L +N GF QT FC + + QL+Q+TS SVRLVS
Sbjct: 441 DDTLVLSFVGQTRVLMLN-GEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 499
Query: 474 STSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIS 533
+ L +EWK P +++VA+ N+SQV++A G L YL+I L ++ H ++E+E++
Sbjct: 500 QEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRA-LYYLQIHPQELRQISHTEMEHEVA 558
Query: 534 CLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGI 593
CLDI P+G++ S + A+G+WTDIS RI LP L+ KE LGGEIIPRS+L+ FE
Sbjct: 559 CLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESS 618
Query: 594 SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI 653
YLLCALGDG L F LN++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTVI
Sbjct: 619 HYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVI 678
Query: 654 YSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE 713
YSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL E
Sbjct: 679 YSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYE 738
Query: 714 HPRRICHQEQSRTFAICSLK---------------------------------------N 734
PR+IC+QE S+ F + S +
Sbjct: 739 SPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHE 798
Query: 735 QSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPE 794
S EE E+H + ++D TFE + + EY S++SC D N Y+ VGTA V PE
Sbjct: 799 TSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPE 858
Query: 795 ENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDG 854
E EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN ++LY+W
Sbjct: 859 EAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTE--- 915
Query: 855 TRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMS 914
+EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG EE ARD+N NWMS
Sbjct: 916 -KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMS 974
Query: 915 AVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR 974
AVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEFVN F HGSLVM+
Sbjct: 975 AVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ 1034
Query: 975 -LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRS 1033
L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK VG + H WRS
Sbjct: 1035 NLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRS 1094
Query: 1034 FNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN----------VSVEELCKRVEE 1083
F+ E+KT A F+DGDLIESFLD+SR +M E+ + + ++L K VEE
Sbjct: 1095 FHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEE 1154
Query: 1084 LTRLH 1088
LTR+H
Sbjct: 1155 LTRIH 1159
>pdb|2B5L|A Chain A, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V
Protein
pdb|2B5L|B Chain B, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V
Protein
pdb|2B5M|A Chain A, Crystal Structure Of Ddb1
pdb|2HYE|A Chain A, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 1140
Score = 1171 bits (3030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/1146 (51%), Positives = 785/1146 (68%), Gaps = 69/1146 (6%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+IA
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIA 62
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIG 121
+ELFRP GE++D LFI T +Y C+L++ ES ++ITRA G+V DRIGRP++ G IG
Sbjct: 63 VMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIG 122
Query: 122 IIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181
IIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC PTI +Y
Sbjct: 123 IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVY 182
Query: 182 QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS 241
QD + RHVKTYEV+L++K+F +GPW Q N++ A ++I VP P G +IIG+E+I Y +
Sbjct: 183 QDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHN 241
Query: 242 ANAFKAIP---IRPSITKAYGRVDADGSRYXXXXXXXXXXXXVITHEKE-----KVTGLK 293
+ + AI I+ S + RVD +GSRY ++ E++ + L+
Sbjct: 242 GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR 301
Query: 294 IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVD 353
+ELLGETSIA ++YLDN VV++GS GDSQL+KLN+ + +GSYV +E + NLGPIVD
Sbjct: 302 VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVD 361
Query: 354 FCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTD-DP 412
CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS + +
Sbjct: 362 MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRET 421
Query: 413 FDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLV 472
+DT LV+SF+ +TR+L +N GF QT FC + + QL+Q+TS SVRLV
Sbjct: 422 YDT-LVLSFVGQTRVLMLN-GEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLV 479
Query: 473 SSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEI 532
S + L +EWK P +++VA+ N+SQV++A G L YL+I L ++ H ++E+E+
Sbjct: 480 SQEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRA-LYYLQIHPQELRQISHTEMEHEV 538
Query: 533 SCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEG 592
+CLDI P+G++ S + A+G+WTDIS RI LP L+ KE LGGEIIPRS+L+ FE
Sbjct: 539 ACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFES 598
Query: 593 ISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTV 652
YLLCALGDG L F LN++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTV
Sbjct: 599 SHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTV 658
Query: 653 IYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLG 712
IYSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL
Sbjct: 659 IYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLY 718
Query: 713 EHPRRICHQEQSRTFAICSLK--------------------------------------- 733
E PR+IC+QE S+ F + S +
Sbjct: 719 ESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPH 778
Query: 734 NQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLP 793
S EE E+H + ++D TFE + + EY S++SC D N Y+ VGTA V P
Sbjct: 779 ETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYP 838
Query: 794 EENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDD 853
EE EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN ++LY+W D
Sbjct: 839 EEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKD 898
Query: 854 GTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWM 913
+++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG EE ARD+N NWM
Sbjct: 899 ----VRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWM 954
Query: 914 SAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVM 973
SAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEFVN F HGSLVM
Sbjct: 955 SAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVM 1014
Query: 974 R-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWR 1032
+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK VG + H WR
Sbjct: 1015 QNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWR 1074
Query: 1033 SFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN----------VSVEELCKRVE 1082
SF+ E+KT A F+DGDLIESFLD+SR +M E+ + + ++L K VE
Sbjct: 1075 SFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVE 1134
Query: 1083 ELTRLH 1088
ELTR+H
Sbjct: 1135 ELTRIH 1140
>pdb|3EI4|A Chain A, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|C Chain C, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|E Chain E, Structure Of The Hsddb1-Hsddb2 Complex
Length = 1158
Score = 1171 bits (3029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/1146 (51%), Positives = 785/1146 (68%), Gaps = 69/1146 (6%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+IA
Sbjct: 21 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIA 80
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIG 121
+ELFRP GE++D LFI T +Y C+L++ ES ++ITRA G+V DRIGRP++ G IG
Sbjct: 81 VMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIG 140
Query: 122 IIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181
IIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC PTI +Y
Sbjct: 141 IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVY 200
Query: 182 QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS 241
QD + RHVKTYEV+L++K+F +GPW Q N++ A ++I VP P G +IIG+E+I Y +
Sbjct: 201 QDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHN 259
Query: 242 ANAFKAIP---IRPSITKAYGRVDADGSRYXXXXXXXXXXXXVITHEKE-----KVTGLK 293
+ + AI I+ S + RVD +GSRY ++ E++ + L+
Sbjct: 260 GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR 319
Query: 294 IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVD 353
+ELLGETSIA ++YLDN VV++GS GDSQL+KLN+ + +GSYV +E + NLGPIVD
Sbjct: 320 VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVD 379
Query: 354 FCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTD-DP 412
CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS + +
Sbjct: 380 MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRET 439
Query: 413 FDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLV 472
+DT LV+SF+ +TR+L +N GF QT FC + + QL+Q+TS SVRLV
Sbjct: 440 YDT-LVLSFVGQTRVLMLN-GEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLV 497
Query: 473 SSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEI 532
S + L +EWK P +++VA+ N+SQV++A G L YL+I L ++ H ++E+E+
Sbjct: 498 SQEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRA-LYYLQIHPQELRQISHTEMEHEV 556
Query: 533 SCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEG 592
+CLDI P+G++ S + A+G+WTDIS RI LP L+ KE LGGEIIPRS+L+ FE
Sbjct: 557 ACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFES 616
Query: 593 ISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTV 652
YLLCALGDG L F LN++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTV
Sbjct: 617 SHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTV 676
Query: 653 IYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLG 712
IYSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL
Sbjct: 677 IYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLY 736
Query: 713 EHPRRICHQEQSRTFAICSLK--------------------------------------- 733
E PR+IC+QE S+ F + S +
Sbjct: 737 ESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPH 796
Query: 734 NQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLP 793
S EE E+H + ++D TFE + + EY S++SC D N Y+ VGTA V P
Sbjct: 797 ETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYP 856
Query: 794 EENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDD 853
EE EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN ++LY+W D
Sbjct: 857 EEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKD 916
Query: 854 GTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWM 913
+++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG EE ARD+N NWM
Sbjct: 917 ----VRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWM 972
Query: 914 SAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVM 973
SAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEFVN F HGSLVM
Sbjct: 973 SAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVM 1032
Query: 974 R-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWR 1032
+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK VG + H WR
Sbjct: 1033 QNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWR 1092
Query: 1033 SFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN----------VSVEELCKRVE 1082
SF+ E+KT A F+DGDLIESFLD+SR +M E+ + + ++L K VE
Sbjct: 1093 SFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVE 1152
Query: 1083 ELTRLH 1088
ELTR+H
Sbjct: 1153 ELTRIH 1158
>pdb|3I7H|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Hbx
pdb|3I7K|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Whx
pdb|3I7L|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Ddb2
pdb|3I7N|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdtc1
pdb|3I7O|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Iqwd1
pdb|3I7P|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdr40a
pdb|3I89|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdr22
pdb|3I8C|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdr21a
pdb|3I8E|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdr42a
pdb|3I8E|B Chain B, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdr42a
Length = 1143
Score = 1170 bits (3028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/1146 (51%), Positives = 785/1146 (68%), Gaps = 69/1146 (6%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+IA
Sbjct: 6 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIA 65
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIG 121
+ELFRP GE++D LFI T +Y C+L++ ES ++ITRA G+V DRIGRP++ G IG
Sbjct: 66 VMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIG 125
Query: 122 IIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181
IIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC PTI +Y
Sbjct: 126 IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVY 185
Query: 182 QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS 241
QD + RHVKTYEV+L++K+F +GPW Q N++ A ++I VP P G +IIG+E+I Y +
Sbjct: 186 QDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHN 244
Query: 242 ANAFKAIP---IRPSITKAYGRVDADGSRYXXXXXXXXXXXXVITHEKE-----KVTGLK 293
+ + AI I+ S + RVD +GSRY ++ E++ + L+
Sbjct: 245 GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR 304
Query: 294 IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVD 353
+ELLGETSIA ++YLDN VV++GS GDSQL+KLN+ + +GSYV +E + NLGPIVD
Sbjct: 305 VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVD 364
Query: 354 FCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTD-DP 412
CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS + +
Sbjct: 365 MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRET 424
Query: 413 FDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLV 472
+DT LV+SF+ +TR+L +N GF QT FC + + QL+Q+TS SVRLV
Sbjct: 425 YDT-LVLSFVGQTRVLMLN-GEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLV 482
Query: 473 SSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEI 532
S + L +EWK P +++VA+ N+SQV++A G L YL+I L ++ H ++E+E+
Sbjct: 483 SQEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRA-LYYLQIHPQELRQISHTEMEHEV 541
Query: 533 SCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEG 592
+CLDI P+G++ S + A+G+WTDIS RI LP L+ KE LGGEIIPRS+L+ FE
Sbjct: 542 ACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFES 601
Query: 593 ISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTV 652
YLLCALGDG L F LN++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTV
Sbjct: 602 SHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTV 661
Query: 653 IYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLG 712
IYSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL
Sbjct: 662 IYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLY 721
Query: 713 EHPRRICHQEQSRTFAICSLK--------------------------------------- 733
E PR+IC+QE S+ F + S +
Sbjct: 722 ESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPH 781
Query: 734 NQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLP 793
S EE E+H + ++D TFE + + EY S++SC D N Y+ VGTA V P
Sbjct: 782 ETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYP 841
Query: 794 EENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDD 853
EE EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN ++LY+W D
Sbjct: 842 EEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKD 901
Query: 854 GTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWM 913
+++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG EE ARD+N NWM
Sbjct: 902 ----VRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWM 957
Query: 914 SAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVM 973
SAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEFVN F HGSLVM
Sbjct: 958 SAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVM 1017
Query: 974 R-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWR 1032
+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK VG + H WR
Sbjct: 1018 QNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWR 1077
Query: 1033 SFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN----------VSVEELCKRVE 1082
SF+ E+KT A F+DGDLIESFLD+SR +M E+ + + ++L K VE
Sbjct: 1078 SFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVE 1137
Query: 1083 ELTRLH 1088
ELTR+H
Sbjct: 1138 ELTRIH 1143
>pdb|2B5N|A Chain A, Crystal Structure Of The Ddb1 Bpb Domain
pdb|2B5N|B Chain B, Crystal Structure Of The Ddb1 Bpb Domain
pdb|2B5N|C Chain C, Crystal Structure Of The Ddb1 Bpb Domain
pdb|2B5N|D Chain D, Crystal Structure Of The Ddb1 Bpb Domain
Length = 323
Score = 354 bits (909), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 177/323 (54%), Positives = 233/323 (72%), Gaps = 4/323 (1%)
Query: 382 VRNGIGINEQASVELQGIKGMWSLRSSTD-DPFDTFLVVSFISETRILAMNLXXXXXXXX 440
+RNGIGI+E AS++L GIKG+W LRS + + +DT LV+SF+ +TR+L +N
Sbjct: 4 MRNGIGIHEHASIDLPGIKGLWPLRSDPNRETYDT-LVLSFVGQTRVLMLN-GEEVEETE 61
Query: 441 XXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQ 500
GF QT FC + + QL+Q+TS SVRLVS + L +EWK P +++VA+ N+SQ
Sbjct: 62 LMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQ 121
Query: 501 VLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISV 560
V++A G L YL+I L ++ H ++E+E++CLDI P+G++ S + A+G+WTDIS
Sbjct: 122 VVVAVGRA-LYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISA 180
Query: 561 RIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDR 620
RI LP L+ KE LGGEIIPRS+L+ FE YLLCALGDG L F LN++TG L+DR
Sbjct: 181 RILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDR 240
Query: 621 KKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAA 680
KKV+LGTQP LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV++MCP NS
Sbjct: 241 KKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDG 300
Query: 681 FPDSLAIAKEGELTIGTIDDIQK 703
+PDSLA+A LTIGTID+IQK
Sbjct: 301 YPDSLALANNSTLTIGTIDEIQK 323
>pdb|2AIZ|P Chain P, Solution Structure Of Peptidoglycan Associated Lipoprotein
From Haemophilus Influenza Bound To
Udp-N-Acetylmuramoyl-L-
Alanyl-D-Glutamyl-Meso-2,6-Diaminopimeloyl-D-Alanyl-D-
Alanine
Length = 134
Score = 33.5 bits (75), Expect = 0.66, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 152 EAFNIRLEELQVLDIKFLYGCAKPTIVVLYQDNKDARHVKTYEVALKDK--DFVEGPWSQ 209
+ ++I E +Q+LD Y A P VL + N D R Y +AL + D V+G +
Sbjct: 37 DKYDITGEYVQILDAHAAYLNATPAAKVLVEGNTDERGTPEYNIALGQRRADAVKGYLAG 96
Query: 210 NNLDNG 215
+D G
Sbjct: 97 KGVDAG 102
>pdb|1ME8|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Rvp Bound
pdb|1ME9|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Imp Bound
pdb|1MEH|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Imp And Moa Bound
Length = 503
Score = 30.0 bits (66), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 18/96 (18%)
Query: 838 AINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIV--------VGDLMKSI 889
AI+Q+ + DDGT HG +L L Q D+ + V D+M
Sbjct: 121 AISQRTTHNTVAVTDDGT--------PHGVLLGLVTQR--DYPIDLTQTETKVSDMMTPF 170
Query: 890 SLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYL 925
S L+ H++ + E + ++A+ I+DDD +L
Sbjct: 171 SKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHL 206
>pdb|1ME7|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Rvp And Moa Bound
pdb|1MEI|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Xmp And Mycophenolic Acid
Bound
pdb|1MEW|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Xmp And Nad Bound
pdb|1AK5|A Chain A, Inosine Monophosphate Dehydrogenase (impdh) From
Tritrichomonas Foetus
Length = 503
Score = 30.0 bits (66), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 18/96 (18%)
Query: 838 AINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIV--------VGDLMKSI 889
AI+Q+ + DDGT HG +L L Q D+ + V D+M
Sbjct: 121 AISQRTTHNTVAVTDDGT--------PHGVLLGLVTQR--DYPIDLTQTETKVSDMMTPF 170
Query: 890 SLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYL 925
S L+ H++ + E + ++A+ I+DDD +L
Sbjct: 171 SKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHL 206
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,065,055
Number of Sequences: 62578
Number of extensions: 1385587
Number of successful extensions: 3731
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3606
Number of HSP's gapped (non-prelim): 26
length of query: 1088
length of database: 14,973,337
effective HSP length: 109
effective length of query: 979
effective length of database: 8,152,335
effective search space: 7981135965
effective search space used: 7981135965
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)