BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001387
(1088 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M0V3|DDB1A_ARATH DNA damage-binding protein 1a OS=Arabidopsis thaliana GN=DDB1A PE=1
SV=1
Length = 1088
Score = 2081 bits (5393), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1001/1088 (92%), Positives = 1056/1088 (97%)
Query: 1 MSIWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYG 60
MS WNYVVTAHKPT+VTHSCVGNFTSPQELNLI+AKCTRIEIHLLTPQGLQPMLDVPIYG
Sbjct: 1 MSSWNYVVTAHKPTSVTHSCVGNFTSPQELNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 60
Query: 61 RIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIGRPTDNGQI 120
RIATLELFRPHGEAQDFLFIATERYKFCVLQWD ESSELITRAMGDVSDRIGRPTDNGQI
Sbjct: 61 RIATLELFRPHGEAQDFLFIATERYKFCVLQWDPESSELITRAMGDVSDRIGRPTDNGQI 120
Query: 121 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVL 180
GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL+GCAKPTI VL
Sbjct: 121 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLFGCAKPTIAVL 180
Query: 181 YQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYC 240
YQDNKDARHVKTYEV+LKDKDFVEGPWSQN+LDNGADLLIPVPPPLCGVLIIGEETIVYC
Sbjct: 181 YQDNKDARHVKTYEVSLKDKDFVEGPWSQNSLDNGADLLIPVPPPLCGVLIIGEETIVYC 240
Query: 241 SANAFKAIPIRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKEKVTGLKIELLGET 300
SA+AFKAIPIRPSITKAYGRVD DGSRYLLGDHAG++HLLVITHEKEKVTGLKIELLGET
Sbjct: 241 SASAFKAIPIRPSITKAYGRVDVDGSRYLLGDHAGMIHLLVITHEKEKVTGLKIELLGET 300
Query: 301 SIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLE 360
SIASTISYLDNAVV++GSSYGDSQL+KLNL PDAKGSYVEVLERY+NLGPIVDFCVVDLE
Sbjct: 301 SIASTISYLDNAVVFVGSSYGDSQLVKLNLHPDAKGSYVEVLERYINLGPIVDFCVVDLE 360
Query: 361 RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVS 420
RQGQGQVVTCSGA+KDGSLR+VRNGIGINEQASVELQGIKGMWSL+SS D+ FDTFLVVS
Sbjct: 361 RQGQGQVVTCSGAFKDGSLRVVRNGIGINEQASVELQGIKGMWSLKSSIDEAFDTFLVVS 420
Query: 421 FISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELR 480
FISETRILAMNLEDELEETEIEGF SQ QTLFCHDA+YNQLVQVTS SVRLVSST+RELR
Sbjct: 421 FISETRILAMNLEDELEETEIEGFLSQVQTLFCHDAVYNQLVQVTSNSVRLVSSTTRELR 480
Query: 481 NEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPI 540
+EW +P G++VNVATANASQVLLATGGGHLVYLEIGDG LTEV+HA LEYE+SCLDINPI
Sbjct: 481 DEWHAPAGFTVNVATANASQVLLATGGGHLVYLEIGDGKLTEVQHALLEYEVSCLDINPI 540
Query: 541 GENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCAL 600
G+NP+YSQ+AAVGMWTDISVRIFSLP+L LITKE LGGEIIPRSVLLCAFEGISYLLCAL
Sbjct: 541 GDNPNYSQLAAVGMWTDISVRIFSLPELTLITKEQLGGEIIPRSVLLCAFEGISYLLCAL 600
Query: 601 GDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKL 660
GDGHLLNF ++ TG+L DRKKVSLGTQPITLRTFSSK+ THVFAASDRPTVIYSSNKKL
Sbjct: 601 GDGHLLNFQMDTTTGQLKDRKKVSLGTQPITLRTFSSKSATHVFAASDRPTVIYSSNKKL 660
Query: 661 LYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICH 720
LYSNVNLKEVSHMCPFNSAAFPDSLAIA+EGELTIGTIDDIQKLHIR+IPLGEH RRICH
Sbjct: 661 LYSNVNLKEVSHMCPFNSAAFPDSLAIAREGELTIGTIDDIQKLHIRTIPLGEHARRICH 720
Query: 721 QEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDS 780
QEQ+RTF ICSL NQS +EESEMHFVRLLDDQTFEF+STYPLD+FEYGCSILSCSF++D
Sbjct: 721 QEQTRTFGICSLGNQSNSEESEMHFVRLLDDQTFEFMSTYPLDSFEYGCSILSCSFTEDK 780
Query: 781 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAIN 840
NVYYCVGTAYVLPEENEPTKGRILVFIVEDG+LQLIAEKETKGAVYSLNAFNGKLLAAIN
Sbjct: 781 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGRLQLIAEKETKGAVYSLNAFNGKLLAAIN 840
Query: 841 QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGA 900
QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLL+YKHEEGA
Sbjct: 841 QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLLYKHEEGA 900
Query: 901 IEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLG 960
IEERARDYNANWMSAVEILDDDIYLGAENNFNL TV+KNSEGATDEERGRLEVVGEYHLG
Sbjct: 901 IEERARDYNANWMSAVEILDDDIYLGAENNFNLLTVKKNSEGATDEERGRLEVVGEYHLG 960
Query: 961 EFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVI 1020
EFVNRFRHGSLVMRLPDS++GQIPTVIFGTVNGVIGVIASLP EQY FLEKLQ++LRKVI
Sbjct: 961 EFVNRFRHGSLVMRLPDSEIGQIPTVIFGTVNGVIGVIASLPQEQYTFLEKLQSSLRKVI 1020
Query: 1021 KGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKR 1080
KGVGGL+HEQWRSFNNEK+T +A+NFLDGDLIESFLDLSR +M++ISK+MNV VEELCKR
Sbjct: 1021 KGVGGLSHEQWRSFNNEKRTAEARNFLDGDLIESFLDLSRNKMEDISKSMNVQVEELCKR 1080
Query: 1081 VEELTRLH 1088
VEELTRLH
Sbjct: 1081 VEELTRLH 1088
>sp|Q6QNU4|DDB1_SOLLC DNA damage-binding protein 1 OS=Solanum lycopersicum GN=DDB1 PE=1
SV=1
Length = 1090
Score = 2075 bits (5377), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1009/1090 (92%), Positives = 1055/1090 (96%), Gaps = 2/1090 (0%)
Query: 1 MSIWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYG 60
MS+WNYVVTAHKPTNVTHSCVGNFT PQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYG
Sbjct: 1 MSVWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYG 60
Query: 61 RIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIGRPTDNGQI 120
RIATLELFRPHGE QD LFIATERYKFCVLQWD E+SE+ITRAMGDVSDRIGRPTDNGQI
Sbjct: 61 RIATLELFRPHGETQDLLFIATERYKFCVLQWDTEASEVITRAMGDVSDRIGRPTDNGQI 120
Query: 121 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVL 180
GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGC KPTIVVL
Sbjct: 121 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCPKPTIVVL 180
Query: 181 YQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYC 240
YQDNKDARHVKTYEV+LKDKDF+EGPW+QNNLDNGA LLIPVPPPLCGVLIIGEETIVYC
Sbjct: 181 YQDNKDARHVKTYEVSLKDKDFIEGPWAQNNLDNGASLLIPVPPPLCGVLIIGEETIVYC 240
Query: 241 SANAFKAIPIRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKEKVTGLKIELLGET 300
SA+AFKAIPIRPSIT+AYGRVDADGSRYLLGDH GLLHLLVITHEKEKVTGLKIELLGET
Sbjct: 241 SASAFKAIPIRPSITRAYGRVDADGSRYLLGDHNGLLHLLVITHEKEKVTGLKIELLGET 300
Query: 301 SIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLE 360
SIASTISYLDNA V+IGSSYGDSQL+KLNLQPD KGSYVEVLERYVNLGPIVDFCVVDLE
Sbjct: 301 SIASTISYLDNAFVFIGSSYGDSQLVKLNLQPDTKGSYVEVLERYVNLGPIVDFCVVDLE 360
Query: 361 RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVS 420
RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRS+TDDP+DTFLVVS
Sbjct: 361 RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSATDDPYDTFLVVS 420
Query: 421 FISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELR 480
FISETR+LAMNLEDELEETEIEGF SQ QTLFCHDA+YNQLVQVTS SVRLVSSTSR+L+
Sbjct: 421 FISETRVLAMNLEDELEETEIEGFNSQVQTLFCHDAVYNQLVQVTSNSVRLVSSTSRDLK 480
Query: 481 NEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPI 540
NEW +P GYSVNVATANA+QVLLATGGGHLVYLEIGDG+L EVK+A+L+Y+ISCLDINPI
Sbjct: 481 NEWFAPVGYSVNVATANATQVLLATGGGHLVYLEIGDGVLNEVKYAKLDYDISCLDINPI 540
Query: 541 GENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCAL 600
GENP+YS IAAVGMWTDISVRI+SLPDLNLITKE LGGEIIPRSVL+C+FEGISYLLCAL
Sbjct: 541 GENPNYSNIAAVGMWTDISVRIYSLPDLNLITKEQLGGEIIPRSVLMCSFEGISYLLCAL 600
Query: 601 GDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKL 660
GDGHLLNF+L+M TGELTDRKKVSLGTQPITLRTFSSK+TTHVFAASDRPTVIYSSNKKL
Sbjct: 601 GDGHLLNFVLSMSTGELTDRKKVSLGTQPITLRTFSSKDTTHVFAASDRPTVIYSSNKKL 660
Query: 661 LYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICH 720
LYSNVNLKEVSHMCPFN AAFPDSLAIAKEGELTIGTID+IQKLHIRSIPLGEH RRI H
Sbjct: 661 LYSNVNLKEVSHMCPFNVAAFPDSLAIAKEGELTIGTIDEIQKLHIRSIPLGEHARRISH 720
Query: 721 QEQSRTFAICSLK-NQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDD 779
QEQ+RTFA+CS+K QS A++ EMHFVRLLDDQTFEFISTYPLD FEYGCSILSCSFSDD
Sbjct: 721 QEQTRTFALCSVKYTQSNADDPEMHFVRLLDDQTFEFISTYPLDQFEYGCSILSCSFSDD 780
Query: 780 SNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAI 839
SNVYYC+GTAYV+PEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAI
Sbjct: 781 SNVYYCIGTAYVMPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAI 840
Query: 840 NQKIQLYKWMLRDD-GTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEE 898
NQKIQLYKW R+D G+RELQ+ECGHHGHILALYVQTRGDFIVVGDLMKSISLLI+KHEE
Sbjct: 841 NQKIQLYKWASREDGGSRELQTECGHHGHILALYVQTRGDFIVVGDLMKSISLLIFKHEE 900
Query: 899 GAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYH 958
GAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEER RLEVVGEYH
Sbjct: 901 GAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERSRLEVVGEYH 960
Query: 959 LGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRK 1018
LGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPH+QYLFLEKLQTNLRK
Sbjct: 961 LGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHDQYLFLEKLQTNLRK 1020
Query: 1019 VIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELC 1078
VIKGVGGL+HEQWRSF NEKKTVDAKNFLDGDLIESFLDLSR RM+EISK M+V VEEL
Sbjct: 1021 VIKGVGGLSHEQWRSFYNEKKTVDAKNFLDGDLIESFLDLSRNRMEEISKAMSVPVEELM 1080
Query: 1079 KRVEELTRLH 1088
KRVEELTRLH
Sbjct: 1081 KRVEELTRLH 1090
>sp|Q6E7D1|DDB1_SOLCE DNA damage-binding protein 1 OS=Solanum cheesmanii GN=DDB1 PE=3 SV=1
Length = 1095
Score = 2068 bits (5358), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1009/1095 (92%), Positives = 1055/1095 (96%), Gaps = 7/1095 (0%)
Query: 1 MSIWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQ-----PMLD 55
MS+WNYVVTAHKPTNVTHSCVGNFT PQELNLIIAKCTRIEIHLLTPQGLQ PMLD
Sbjct: 1 MSVWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEIHLLTPQGLQCICLQPMLD 60
Query: 56 VPIYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIGRPT 115
VPIYGRIATLELFRPHGE QD LFIATERYKFCVLQWD E+SE+ITRAMGDVSDRIGRPT
Sbjct: 61 VPIYGRIATLELFRPHGETQDLLFIATERYKFCVLQWDTEASEVITRAMGDVSDRIGRPT 120
Query: 116 DNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKP 175
DNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGC KP
Sbjct: 121 DNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCPKP 180
Query: 176 TIVVLYQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEE 235
TIVVLYQDNKDARHVKTYEV+LKDKDF+EGPW+QNNLDNGA LLIPVPPPLCGVLIIGEE
Sbjct: 181 TIVVLYQDNKDARHVKTYEVSLKDKDFIEGPWAQNNLDNGASLLIPVPPPLCGVLIIGEE 240
Query: 236 TIVYCSANAFKAIPIRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKEKVTGLKIE 295
TIVYCSA+AFKAIPIRPSIT+AYGRVDADGSRYLLGDH GLLHLLVITHEKEKVTGLKIE
Sbjct: 241 TIVYCSASAFKAIPIRPSITRAYGRVDADGSRYLLGDHNGLLHLLVITHEKEKVTGLKIE 300
Query: 296 LLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFC 355
LLGETSIASTISYLDNA V+IGSSYGDSQL+KLNLQPD KGSYVEVLERYVNLGPIVDFC
Sbjct: 301 LLGETSIASTISYLDNAFVFIGSSYGDSQLVKLNLQPDTKGSYVEVLERYVNLGPIVDFC 360
Query: 356 VVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDT 415
VVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRS+TDDP+DT
Sbjct: 361 VVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSATDDPYDT 420
Query: 416 FLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSST 475
FLVVSFISETR+LAMNLEDELEETEIEGF SQ QTLFCHDA+YNQLVQVTS SVRLVSST
Sbjct: 421 FLVVSFISETRVLAMNLEDELEETEIEGFNSQVQTLFCHDAVYNQLVQVTSNSVRLVSST 480
Query: 476 SRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCL 535
SR+L+NEW +P GYSVNVATANA+QVLLATGGGHLVYLEIGDG+L EVK+A+L+Y+ISCL
Sbjct: 481 SRDLKNEWFAPVGYSVNVATANATQVLLATGGGHLVYLEIGDGVLNEVKYAKLDYDISCL 540
Query: 536 DINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISY 595
DINPIGENP+YS IAAVGMWTDISVRI+SLPDLNLITKE LGGEIIPRSVL+C+FEGISY
Sbjct: 541 DINPIGENPNYSNIAAVGMWTDISVRIYSLPDLNLITKEQLGGEIIPRSVLMCSFEGISY 600
Query: 596 LLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYS 655
LLCALGDGHLLNF+L+M TGELTDRKKVSLGTQPITLRTFSSK+TTHVFAASDRPTVIYS
Sbjct: 601 LLCALGDGHLLNFVLSMSTGELTDRKKVSLGTQPITLRTFSSKDTTHVFAASDRPTVIYS 660
Query: 656 SNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHP 715
SNKKLLYSNVNLKEVSHMCPFN AAFPDSLAIAKEGELTIGTID+IQKLHIRSIPLGEH
Sbjct: 661 SNKKLLYSNVNLKEVSHMCPFNVAAFPDSLAIAKEGELTIGTIDEIQKLHIRSIPLGEHA 720
Query: 716 RRICHQEQSRTFAICSLK-NQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSC 774
RRI HQEQ+RTFA+CS+K QS A++ EMHFVRLLDDQTFEFISTYPLD FEYGCSILSC
Sbjct: 721 RRISHQEQTRTFALCSVKYTQSNADDPEMHFVRLLDDQTFEFISTYPLDQFEYGCSILSC 780
Query: 775 SFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGK 834
SFSDDSNVYYC+GTAYV+PEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGK
Sbjct: 781 SFSDDSNVYYCIGTAYVMPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGK 840
Query: 835 LLAAINQKIQLYKWMLRDD-GTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLI 893
LLAAINQKIQLYKW R+D G+RELQ+ECGHHGHILALYVQTRGDFIVVGDLMKSISLLI
Sbjct: 841 LLAAINQKIQLYKWASREDGGSRELQTECGHHGHILALYVQTRGDFIVVGDLMKSISLLI 900
Query: 894 YKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEV 953
+KHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEER RLEV
Sbjct: 901 FKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERSRLEV 960
Query: 954 VGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQ 1013
VGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPH+QYLFLEKLQ
Sbjct: 961 VGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHDQYLFLEKLQ 1020
Query: 1014 TNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVS 1073
TNLRKVIKGVGGL+HEQWRSF NEKKTVDAKNFLDGDLIESFLDLSR RM+EISK M+V
Sbjct: 1021 TNLRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDGDLIESFLDLSRNRMEEISKAMSVP 1080
Query: 1074 VEELCKRVEELTRLH 1088
VEEL KRVEELTRLH
Sbjct: 1081 VEELMKRVEELTRLH 1095
>sp|O49552|DDB1B_ARATH DNA damage-binding protein 1b OS=Arabidopsis thaliana GN=DDB1B PE=2
SV=2
Length = 1088
Score = 2015 bits (5220), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 969/1088 (89%), Positives = 1036/1088 (95%)
Query: 1 MSIWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYG 60
MS+WNY VTA KPT VTHSCVGNFTSPQELNLI+AK TRIEIHLL+PQGLQ +LDVP+YG
Sbjct: 1 MSVWNYAVTAQKPTCVTHSCVGNFTSPQELNLIVAKSTRIEIHLLSPQGLQTILDVPLYG 60
Query: 61 RIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIGRPTDNGQI 120
RIAT+ELFRPHGEAQDFLF+ATERYKFCVLQWD ESSELITRAMGDVSDRIGRPTDNGQI
Sbjct: 61 RIATMELFRPHGEAQDFLFVATERYKFCVLQWDYESSELITRAMGDVSDRIGRPTDNGQI 120
Query: 121 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVL 180
GIIDPDCR+IGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGC KPTI VL
Sbjct: 121 GIIDPDCRVIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCTKPTIAVL 180
Query: 181 YQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYC 240
YQDNKDARHVKTYEV+LKDK+FVEGPWSQNNLDNGADLLIPVP PLCGVLIIGEETIVYC
Sbjct: 181 YQDNKDARHVKTYEVSLKDKNFVEGPWSQNNLDNGADLLIPVPSPLCGVLIIGEETIVYC 240
Query: 241 SANAFKAIPIRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKEKVTGLKIELLGET 300
SANAFKAIPIRPSITKAYGRVD DGSRYLLGDHAGL+HLLVITHEKEKVTGLKIELLGET
Sbjct: 241 SANAFKAIPIRPSITKAYGRVDLDGSRYLLGDHAGLIHLLVITHEKEKVTGLKIELLGET 300
Query: 301 SIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLE 360
SIAS+ISYLDNAVV++GSSYGDSQLIKLNLQPDAKGSYVE+LE+YVNLGPIVDFCVVDLE
Sbjct: 301 SIASSISYLDNAVVFVGSSYGDSQLIKLNLQPDAKGSYVEILEKYVNLGPIVDFCVVDLE 360
Query: 361 RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVS 420
RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSL+SS D+ FDTFLVVS
Sbjct: 361 RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLKSSIDEAFDTFLVVS 420
Query: 421 FISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELR 480
FISETRILAMN+EDELEETEIEGF S+ QTLFCHDA+YNQLVQVTS SVRLVSST+RELR
Sbjct: 421 FISETRILAMNIEDELEETEIEGFLSEVQTLFCHDAVYNQLVQVTSNSVRLVSSTTRELR 480
Query: 481 NEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPI 540
N+W +P G+SVNVATANASQVLLATGGGHLVYLEIGDG LTEVKH LEYE+SCLDINPI
Sbjct: 481 NKWDAPAGFSVNVATANASQVLLATGGGHLVYLEIGDGTLTEVKHVLLEYEVSCLDINPI 540
Query: 541 GENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCAL 600
G+NP+YSQ+AAVGMWTDISVRIF LPDL LITKE LGGEIIPRSVLLCAFEGISYLLCAL
Sbjct: 541 GDNPNYSQLAAVGMWTDISVRIFVLPDLTLITKEELGGEIIPRSVLLCAFEGISYLLCAL 600
Query: 601 GDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKL 660
GDGHLLNF L+ G+L DRKKVSLGT+PITLRTFSSK+ THVFAASDRP VIYS+NKKL
Sbjct: 601 GDGHLLNFQLDTSCGKLRDRKKVSLGTRPITLRTFSSKSATHVFAASDRPAVIYSNNKKL 660
Query: 661 LYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICH 720
LYSNVNLKEVSHMCPFNSAAFPDSLAIA+EGELTIGTIDDIQKLHIR+IP+GEH RRICH
Sbjct: 661 LYSNVNLKEVSHMCPFNSAAFPDSLAIAREGELTIGTIDDIQKLHIRTIPIGEHARRICH 720
Query: 721 QEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDS 780
QEQ+RTFAI L+N+ AEESE HFVRLLD Q+FEF+S+YPLD FE GCSILSCSF+DD
Sbjct: 721 QEQTRTFAISCLRNEPSAEESESHFVRLLDAQSFEFLSSYPLDAFECGCSILSCSFTDDK 780
Query: 781 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAIN 840
NVYYCVGTAYVLPEENEPTKGRILVFIVE+G+LQLI EKETKGAVYSLNAFNGKLLA+IN
Sbjct: 781 NVYYCVGTAYVLPEENEPTKGRILVFIVEEGRLQLITEKETKGAVYSLNAFNGKLLASIN 840
Query: 841 QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGA 900
QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFI VGDLMKSISLLIYKHEEGA
Sbjct: 841 QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIAVGDLMKSISLLIYKHEEGA 900
Query: 901 IEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLG 960
IEERARDYNANWM+AVEIL+DDIYLG +N FN+FTV+KN+EGATDEER R+EVVGEYH+G
Sbjct: 901 IEERARDYNANWMTAVEILNDDIYLGTDNCFNIFTVKKNNEGATDEERARMEVVGEYHIG 960
Query: 961 EFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVI 1020
EFVNRFRHGSLVM+LPDSD+GQIPTVIFGTV+G+IGVIASLP EQY FLEKLQT+LRKVI
Sbjct: 961 EFVNRFRHGSLVMKLPDSDIGQIPTVIFGTVSGMIGVIASLPQEQYAFLEKLQTSLRKVI 1020
Query: 1021 KGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKR 1080
KGVGGL+HEQWRSFNNEK+T +AK +LDGDLIESFLDLSR +M+EISK M+V VEELCKR
Sbjct: 1021 KGVGGLSHEQWRSFNNEKRTAEAKGYLDGDLIESFLDLSRGKMEEISKGMDVQVEELCKR 1080
Query: 1081 VEELTRLH 1088
VEELTRLH
Sbjct: 1081 VEELTRLH 1088
>sp|Q3U1J4|DDB1_MOUSE DNA damage-binding protein 1 OS=Mus musculus GN=Ddb1 PE=1 SV=2
Length = 1140
Score = 1209 bits (3127), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 607/1145 (53%), Positives = 799/1145 (69%), Gaps = 67/1145 (5%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+IA
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIA 62
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIG 121
+ELFRP GE++D LFI T +Y C+L++ ES ++ITRA G+V DRIGRP++ G IG
Sbjct: 63 VMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIG 122
Query: 122 IIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181
IIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC PTI +Y
Sbjct: 123 IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVY 182
Query: 182 QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS 241
QD + RHVKTYEV+L++K+F +GPW Q N++ A ++I VP P G +IIG+E+I Y +
Sbjct: 183 QDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHN 241
Query: 242 ANAFKAIP---IRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKE-----KVTGLK 293
+ + AI I+ S + RVD +GSRYLLGD G L +L++ E++ + L+
Sbjct: 242 GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR 301
Query: 294 IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVD 353
+ELLGETSIA ++YLDN VV++GS GDSQL+KLN+ + +GSYV +E + NLGPIVD
Sbjct: 302 VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVD 361
Query: 354 FCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPF 413
CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS
Sbjct: 362 MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPGRET 421
Query: 414 DTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVS 473
D LV+SF+ +TR+L +N E E+EETE+ GF QT FC + + QL+Q+TS SVRLVS
Sbjct: 422 DDTLVLSFVGQTRVLMLNGE-EVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 480
Query: 474 STSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIS 533
+ L +EWK P G +++VA+ N+SQV++A G L YL+I L ++ H ++E+E++
Sbjct: 481 QEPKALVSEWKEPQGKNISVASCNSSQVVVAVGRA-LYYLQIHPQELRQISHTEMEHEVA 539
Query: 534 CLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGI 593
CLDI P+G++ S + A+G+WTDIS RI LP L+ KE LGGEIIPRS+L+ FE
Sbjct: 540 CLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESS 599
Query: 594 SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI 653
YLLCALGDG L F LN++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTVI
Sbjct: 600 HYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVI 659
Query: 654 YSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE 713
YSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL E
Sbjct: 660 YSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYE 719
Query: 714 HPRRICHQEQSRTFAICSLK---------------------------------------N 734
PR+IC+QE S+ F + S +
Sbjct: 720 SPRKICYQEVSQCFGVLSSRIEVQDSSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHE 779
Query: 735 QSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPE 794
S EE E+H + ++D TFE + + EY S++SC D N Y+ VGTA V PE
Sbjct: 780 TSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPE 839
Query: 795 ENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDG 854
E EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN ++LY+W
Sbjct: 840 EAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTE--- 896
Query: 855 TRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMS 914
+EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG EE ARD+N NWMS
Sbjct: 897 -KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMS 955
Query: 915 AVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR 974
AVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEFVN F HGSLVM+
Sbjct: 956 AVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ 1015
Query: 975 -LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRS 1033
L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK VG + H WRS
Sbjct: 1016 NLGEASTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRS 1075
Query: 1034 FNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN----------VSVEELCKRVEE 1083
F+ E+KT A F+DGDLIESFLD+SR +M E+ + + ++L K VEE
Sbjct: 1076 FHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEE 1135
Query: 1084 LTRLH 1088
LTR+H
Sbjct: 1136 LTRIH 1140
>sp|A1A4K3|DDB1_BOVIN DNA damage-binding protein 1 OS=Bos taurus GN=DDB1 PE=2 SV=1
Length = 1140
Score = 1208 bits (3125), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 607/1145 (53%), Positives = 800/1145 (69%), Gaps = 67/1145 (5%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+IA
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIA 62
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIG 121
+ELFRP GE++D LFI T +Y C+L++ ES ++ITRA G+V DRIGRP++ G IG
Sbjct: 63 VMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIG 122
Query: 122 IIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181
IIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC PTI +Y
Sbjct: 123 IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVY 182
Query: 182 QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS 241
QD + RHVKTYEV+L++K+F +GPW Q N++ A ++I VP P G +IIG+E+I Y +
Sbjct: 183 QDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHN 241
Query: 242 ANAFKAIP---IRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKE-----KVTGLK 293
+ + AI I+ S + RVD +GSRYLLGD G L +L++ E++ + L+
Sbjct: 242 GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR 301
Query: 294 IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVD 353
+ELLGETSIA ++YLDN VV++GS GDSQL+KLN+ + +GSYV +E + NLGPIVD
Sbjct: 302 VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVD 361
Query: 354 FCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPF 413
CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS +
Sbjct: 362 MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRET 421
Query: 414 DTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVS 473
D LV+SF+ +TR+L +N E E+EETE+ GF QT FC + + QL+Q+TS SVRLVS
Sbjct: 422 DDTLVLSFVGQTRVLMLNGE-EVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 480
Query: 474 STSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIS 533
+ L +EWK P G +++VA+ N+SQV++A G L YL+I L ++ H ++E+E++
Sbjct: 481 QEPKALVSEWKEPQGKNISVASCNSSQVVVAVGRA-LYYLQIHPQELRQISHTEMEHEVA 539
Query: 534 CLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGI 593
CLDI P+G++ S + A+G+WTDIS RI LP L+ KE LGGEIIPRS+L+ FE
Sbjct: 540 CLDITPLGDSNGMSPLCAIGLWTDISARIAKLPSFELLHKEMLGGEIIPRSILMTTFESS 599
Query: 594 SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI 653
YLLCALGDG L F LN++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTVI
Sbjct: 600 HYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVI 659
Query: 654 YSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE 713
YSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL E
Sbjct: 660 YSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYE 719
Query: 714 HPRRICHQEQSRTFAICSLK---------------------------------------N 734
PR+IC+QE S+ F + S +
Sbjct: 720 SPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHE 779
Query: 735 QSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPE 794
S EE E+H + ++D TFE + + EY S++SC D N Y+ VGTA V PE
Sbjct: 780 TSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPE 839
Query: 795 ENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDG 854
E EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN ++LY+W
Sbjct: 840 EAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTE--- 896
Query: 855 TRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMS 914
+EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG EE ARD+N NWMS
Sbjct: 897 -KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMS 955
Query: 915 AVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR 974
AVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEFVN F HGSLVM+
Sbjct: 956 AVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ 1015
Query: 975 -LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRS 1033
L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK VG + H WRS
Sbjct: 1016 NLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRS 1075
Query: 1034 FNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN----------VSVEELCKRVEE 1083
F+ E+KT A F+DGDLIESFLD+SR +M E+ + + ++L K VEE
Sbjct: 1076 FHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEE 1135
Query: 1084 LTRLH 1088
LTR+H
Sbjct: 1136 LTRIH 1140
>sp|Q16531|DDB1_HUMAN DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1
Length = 1140
Score = 1207 bits (3122), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 606/1145 (52%), Positives = 799/1145 (69%), Gaps = 67/1145 (5%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+IA
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIA 62
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIG 121
+ELFRP GE++D LFI T +Y C+L++ ES ++ITRA G+V DRIGRP++ G IG
Sbjct: 63 VMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIG 122
Query: 122 IIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181
IIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC PTI +Y
Sbjct: 123 IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVY 182
Query: 182 QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS 241
QD + RHVKTYEV+L++K+F +GPW Q N++ A ++I VP P G +IIG+E+I Y +
Sbjct: 183 QDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHN 241
Query: 242 ANAFKAIP---IRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKE-----KVTGLK 293
+ + AI I+ S + RVD +GSRYLLGD G L +L++ E++ + L+
Sbjct: 242 GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR 301
Query: 294 IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVD 353
+ELLGETSIA ++YLDN VV++GS GDSQL+KLN+ + +GSYV +E + NLGPIVD
Sbjct: 302 VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVD 361
Query: 354 FCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPF 413
CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS +
Sbjct: 362 MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRET 421
Query: 414 DTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVS 473
D LV+SF+ +TR+L +N E E+EETE+ GF QT FC + + QL+Q+TS SVRLVS
Sbjct: 422 DDTLVLSFVGQTRVLMLNGE-EVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 480
Query: 474 STSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIS 533
+ L +EWK P +++VA+ N+SQV++A G L YL+I L ++ H ++E+E++
Sbjct: 481 QEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRA-LYYLQIHPQELRQISHTEMEHEVA 539
Query: 534 CLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGI 593
CLDI P+G++ S + A+G+WTDIS RI LP L+ KE LGGEIIPRS+L+ FE
Sbjct: 540 CLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESS 599
Query: 594 SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI 653
YLLCALGDG L F LN++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTVI
Sbjct: 600 HYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVI 659
Query: 654 YSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE 713
YSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL E
Sbjct: 660 YSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYE 719
Query: 714 HPRRICHQEQSRTFAICSLK---------------------------------------N 734
PR+IC+QE S+ F + S +
Sbjct: 720 SPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHE 779
Query: 735 QSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPE 794
S EE E+H + ++D TFE + + EY S++SC D N Y+ VGTA V PE
Sbjct: 780 TSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPE 839
Query: 795 ENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDG 854
E EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN ++LY+W
Sbjct: 840 EAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTE--- 896
Query: 855 TRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMS 914
+EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG EE ARD+N NWMS
Sbjct: 897 -KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMS 955
Query: 915 AVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR 974
AVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEFVN F HGSLVM+
Sbjct: 956 AVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ 1015
Query: 975 -LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRS 1033
L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK VG + H WRS
Sbjct: 1016 NLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRS 1075
Query: 1034 FNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN----------VSVEELCKRVEE 1083
F+ E+KT A F+DGDLIESFLD+SR +M E+ + + ++L K VEE
Sbjct: 1076 FHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEE 1135
Query: 1084 LTRLH 1088
LTR+H
Sbjct: 1136 LTRIH 1140
>sp|P33194|DDB1_CHLAE DNA damage-binding protein 1 OS=Chlorocebus aethiops GN=DDB1 PE=1
SV=1
Length = 1140
Score = 1205 bits (3118), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 605/1145 (52%), Positives = 798/1145 (69%), Gaps = 67/1145 (5%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V +FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+IA
Sbjct: 3 YNYVVTAQKPTAVNGCVTAHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIA 62
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIG 121
+ELFRP GE++D LFI T +Y C+L++ ES ++ITRA G+V DRIGRP++ G IG
Sbjct: 63 VMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIG 122
Query: 122 IIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181
IIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC PTI +Y
Sbjct: 123 IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVY 182
Query: 182 QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS 241
QD + RHVKTYEV+L++K+F +GPW Q N++ A ++I VP P G +IIG+E+I Y +
Sbjct: 183 QDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHN 241
Query: 242 ANAFKAIP---IRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKE-----KVTGLK 293
+ + AI I+ S + RVD +GSRYLLGD G L +L++ E++ + L+
Sbjct: 242 GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR 301
Query: 294 IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVD 353
+ELLGETSIA ++YLDN VV++GS GDSQL+KLN+ + +GSYV +E + NLGPIVD
Sbjct: 302 VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVD 361
Query: 354 FCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPF 413
CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS +
Sbjct: 362 MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRET 421
Query: 414 DTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVS 473
D LV+SF+ +TR+L +N E E+EETE+ GF QT FC + + QL+Q+TS SVRLVS
Sbjct: 422 DDTLVLSFVGQTRVLMLNGE-EVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 480
Query: 474 STSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIS 533
+ L +EWK P +++VA+ N+SQV++A G L YL+I L ++ H ++E+E++
Sbjct: 481 QEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRA-LYYLQIHPQELRQISHTEMEHEVA 539
Query: 534 CLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGI 593
CLDI P+G++ S + A+G+WTDIS RI LP L+ KE LGGEIIPRS+L+ FE
Sbjct: 540 CLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESS 599
Query: 594 SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI 653
YLLCALGDG L F LN++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTVI
Sbjct: 600 HYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVI 659
Query: 654 YSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE 713
YSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL E
Sbjct: 660 YSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYE 719
Query: 714 HPRRICHQEQSRTFAICSLK---------------------------------------N 734
PR+IC+QE S+ F + S +
Sbjct: 720 SPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHE 779
Query: 735 QSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPE 794
S EE E+H + ++D TFE + + EY S++SC D N Y+ VGTA V PE
Sbjct: 780 TSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPE 839
Query: 795 ENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDG 854
E EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN ++LY+W
Sbjct: 840 EAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTE--- 896
Query: 855 TRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMS 914
+EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG EE ARD+N NWMS
Sbjct: 897 -KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMS 955
Query: 915 AVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR 974
AVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEFVN F HGSLVM+
Sbjct: 956 AVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ 1015
Query: 975 -LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRS 1033
L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK VG + H WRS
Sbjct: 1016 NLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRS 1075
Query: 1034 FNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN----------VSVEELCKRVEE 1083
F+ E+KT A F+DGDLIESFLD+SR +M E+ + + ++L K VEE
Sbjct: 1076 FHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEE 1135
Query: 1084 LTRLH 1088
LTR+H
Sbjct: 1136 LTRIH 1140
>sp|Q5R649|DDB1_PONAB DNA damage-binding protein 1 OS=Pongo abelii GN=DDB1 PE=2 SV=1
Length = 1140
Score = 1204 bits (3116), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 605/1145 (52%), Positives = 798/1145 (69%), Gaps = 67/1145 (5%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+IA
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIA 62
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIG 121
+ELFRP GE++D LFI T +Y C+L++ ES ++ITRA G+V DRIGRP++ G IG
Sbjct: 63 VMELFRPKGESKDLLFILTAKYNVCILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIG 122
Query: 122 IIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181
IIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC PTI +Y
Sbjct: 123 IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVY 182
Query: 182 QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS 241
QD + RHVKTYEV+L++K+F +GPW Q N++ A ++I VP P G +IIG+E+I Y +
Sbjct: 183 QDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHN 241
Query: 242 ANAFKAIP---IRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKE-----KVTGLK 293
+ + AI I+ S + RVD +GSRYLLGD G L +L++ E++ + L+
Sbjct: 242 GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR 301
Query: 294 IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVD 353
+ELLGETSIA ++YLDN VV++GS GDSQL+KLN+ + +GSYV +E + NLGPIVD
Sbjct: 302 VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVD 361
Query: 354 FCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPF 413
CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS +
Sbjct: 362 MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRET 421
Query: 414 DTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVS 473
D LV+SF+ +TR+L +N E E+EETE+ GF QT FC + + QL+Q+TS SVRLVS
Sbjct: 422 DDTLVLSFVGQTRVLMLNGE-EVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 480
Query: 474 STSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIS 533
+ L +EWK P +++VA+ N+SQV++A G L YL+I L ++ H ++E+E++
Sbjct: 481 QEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRA-LYYLQIHPQELRQISHTEMEHEVA 539
Query: 534 CLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGI 593
CLDI P+G++ S + A+G+WTDIS RI LP L+ KE LGGEIIPRS+L+ FE
Sbjct: 540 CLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESS 599
Query: 594 SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI 653
YLLCALGDG L F LN++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTVI
Sbjct: 600 HYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVI 659
Query: 654 YSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE 713
YSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL E
Sbjct: 660 YSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYE 719
Query: 714 HPRRICHQEQSRTFAICSLK---------------------------------------N 734
PR+IC+QE S+ F + S +
Sbjct: 720 SPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHE 779
Query: 735 QSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPE 794
S EE E+H + ++D TFE + + EY S++SC D N Y+ VGTA V PE
Sbjct: 780 TSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPE 839
Query: 795 ENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDG 854
E EP +GRI+VF DGKLQ +AEKE KGAVY + FNGKLLA+IN ++LY+W
Sbjct: 840 EAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYPMVEFNGKLLASINSTVRLYEWTTE--- 896
Query: 855 TRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMS 914
+EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG EE ARD+N NWMS
Sbjct: 897 -KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMS 955
Query: 915 AVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR 974
AVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEFVN F HGSLVM+
Sbjct: 956 AVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ 1015
Query: 975 -LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRS 1033
L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK VG + H WRS
Sbjct: 1016 NLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRS 1075
Query: 1034 FNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN----------VSVEELCKRVEE 1083
F+ E+KT A F+DGDLIESFLD+SR +M E+ + + ++L K VEE
Sbjct: 1076 FHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEE 1135
Query: 1084 LTRLH 1088
LTR+H
Sbjct: 1136 LTRIH 1140
>sp|Q805F9|DDB1_CHICK DNA damage-binding protein 1 OS=Gallus gallus GN=DDB1 PE=2 SV=1
Length = 1140
Score = 1203 bits (3113), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 604/1145 (52%), Positives = 801/1145 (69%), Gaps = 67/1145 (5%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+ A
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKTA 62
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIG 121
+ELFRP GE++D LFI T +Y C+L++ + ++ ++ITRA G+V DRIGRP++ G IG
Sbjct: 63 VMELFRPKGESKDLLFILTAKYNACILEYKQNGDNIDIITRAHGNVQDRIGRPSETGIIG 122
Query: 122 IIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181
IIDP+CR+IGL LYDGLFKVIP D + + +AFNIRLEELQV+D+KFLYGC PTI +Y
Sbjct: 123 IIDPECRMIGLRLYDGLFKVIPLDRENKELKAFNIRLEELQVIDVKFLYGCQAPTICFVY 182
Query: 182 QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS 241
QD + RHVKTYEV+L++K+F +GPW Q N++ A ++I VP P G +IIG+E+I Y +
Sbjct: 183 QDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHN 241
Query: 242 ANAFKAIP---IRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKE-----KVTGLK 293
+ + AI I+ S + RVD +GSRYLLGD G L +L++ E++ + L+
Sbjct: 242 GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR 301
Query: 294 IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVD 353
+ELLGETSIA ++YLDN VV++GS GDSQL+KLN+ + +GSYV +E + NLGPIVD
Sbjct: 302 VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVD 361
Query: 354 FCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPF 413
CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS +
Sbjct: 362 MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDSHREM 421
Query: 414 DTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVS 473
D LV+SF+ +TR+L +N E E+EETE+ GF QT FC + + QL+Q+TS SVRLVS
Sbjct: 422 DNMLVLSFVGQTRVLMLNGE-EVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 480
Query: 474 STSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIS 533
+ L +EWK P G +++VA+ N++QV++A G L YLEI L ++ ++E+E++
Sbjct: 481 QEPKALVSEWKEPNGKNISVASCNSNQVVVAVGRA-LYYLEIRPQELRQINCTEMEHEVA 539
Query: 534 CLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGI 593
CLDI P+G+ S + A+G+WTDIS RI LP L+ KE LGGEIIPRS+L+ FE
Sbjct: 540 CLDITPLGDTNGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESS 599
Query: 594 SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI 653
YLLCALGDG L F L+++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTVI
Sbjct: 600 HYLLCALGDGALFYFGLSLETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVI 659
Query: 654 YSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE 713
YSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL E
Sbjct: 660 YSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYE 719
Query: 714 HPRRICHQEQSRTFAICSLK---------------------------------------N 734
PR+IC+QE S+ F + S +
Sbjct: 720 SPRKICYQEVSQCFGVLSSRIEVQDASGGTTALRPSASTQALSSSVSTSKLFSSSTAPHE 779
Query: 735 QSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPE 794
S EE E+H + ++D TFE + + EY S++SC D N Y+ VGTA V PE
Sbjct: 780 TSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPE 839
Query: 795 ENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDG 854
E EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN ++LY+W
Sbjct: 840 EAEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWT----A 895
Query: 855 TRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMS 914
+EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG EE ARD+N NWMS
Sbjct: 896 EKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMS 955
Query: 915 AVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR 974
AVEILDDD +LGAEN FNLF +K+S TDEER L+ VG HLGEFVN F HGSLVM+
Sbjct: 956 AVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLSHLGEFVNVFCHGSLVMQ 1015
Query: 975 -LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRS 1033
L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK VG + H WRS
Sbjct: 1016 NLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRS 1075
Query: 1034 FNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNV----------SVEELCKRVEE 1083
F+ E+KT A F+DGDLIESFLD+SR +M E+ + + +V++L K VEE
Sbjct: 1076 FHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKREATVDDLIKIVEE 1135
Query: 1084 LTRLH 1088
LTR+H
Sbjct: 1136 LTRIH 1140
>sp|Q6P6Z0|DDB1_XENLA DNA damage-binding protein 1 OS=Xenopus laevis GN=ddb1 PE=2 SV=1
Length = 1140
Score = 1202 bits (3111), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 608/1145 (53%), Positives = 799/1145 (69%), Gaps = 67/1145 (5%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V G+FTS +LNL+IAK TR+EI+++TP+GL+P+ +V +YG+IA
Sbjct: 3 YNYVVTAQKPTAVNACVTGHFTSEDDLNLLIAKNTRLEIYVVTPEGLRPVKEVGMYGKIA 62
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIG 121
+ELFRP GE++D LFI T +Y C+L++ +S ++ITRA G+V DRIGRP++ G IG
Sbjct: 63 VMELFRPKGESKDLLFILTAKYNACILEYKQSGDSIDIITRAHGNVQDRIGRPSETGIIG 122
Query: 122 IIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181
IIDPDCR+IGL LYDGLFKVIP + + +AFNIRLEEL V+D+KFLY C PTI +Y
Sbjct: 123 IIDPDCRMIGLRLYDGLFKVIPLERDNKELKAFNIRLEELHVIDVKFLYSCQAPTICFVY 182
Query: 182 QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS 241
QD + RHVKTYEV+L++K+F +GPW Q N++ A ++I VP P G +IIG+E+I Y +
Sbjct: 183 QDPQ-GRHVKTYEVSLREKEFSKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHN 241
Query: 242 ANAFKAIP---IRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKE-----KVTGLK 293
+ + AI I+ S + RVD +GSRYLLGD G L +L++ E++ + L+
Sbjct: 242 GDKYLAIAPPIIKQSTIVCHNRVDVNGSRYLLGDMEGRLFMLLLEKEEQMDGSVTLKDLR 301
Query: 294 IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVD 353
+ELLGETSIA ++YLDN VV++GS GDSQL+KL + + +GSYV V+E + NLGPIVD
Sbjct: 302 VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLTTESNEQGSYVVVMETFTNLGPIVD 361
Query: 354 FCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPF 413
CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LR + D
Sbjct: 362 MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRVAADRDT 421
Query: 414 DTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVS 473
D LV+SF+ +TR+L + E E+EET++ GF QT FC + + QL+Q+TS SVRLVS
Sbjct: 422 DDTLVLSFVGQTRVLTLTGE-EVEETDLAGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 480
Query: 474 STSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIS 533
+ L +EWK P G V+V + N+ QVLLA G L YLEI G L + ++E+E++
Sbjct: 481 QNPQNLVSEWKEPQGRKVSVCSCNSRQVLLAVGR-VLYYLEIHPGELRQTSCTEMEHEVA 539
Query: 534 CLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGI 593
CLD+ P+G N + S + A+G+WTDIS RI SLP L+ KE LGGEIIPRS+L+ +FE
Sbjct: 540 CLDVTPLGGNDTLSSLCAIGLWTDISARILSLPGFQLLHKEMLGGEIIPRSILMTSFESS 599
Query: 594 SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI 653
YLLCALGDG L F LN TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTVI
Sbjct: 600 HYLLCALGDGALFYFSLNTDTGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVI 659
Query: 654 YSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE 713
YSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL E
Sbjct: 660 YSSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLFE 719
Query: 714 HPRRICHQEQSRTFAICSLKNQ------------------------SCA----------- 738
PR+IC+QE S+ F + S + + SC+
Sbjct: 720 SPRKICYQEVSQCFGVLSSRIEVQDASGGSSPLRPSASTQALSSSVSCSKLFSGSTSPHE 779
Query: 739 ----EESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPE 794
EE E+H + ++D TFE + T+ EY S++SC D Y+ VGTA V P+
Sbjct: 780 TSFGEEVEVHNLLIIDQHTFEVLHTHQFLQNEYTLSLVSCKLGKDPTTYFVVGTAMVYPD 839
Query: 795 ENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDG 854
E EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN ++LY+W
Sbjct: 840 EAEPKQGRIVVFQYNDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWT----A 895
Query: 855 TRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMS 914
+EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG EE ARD+N NWMS
Sbjct: 896 EKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMS 955
Query: 915 AVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR 974
AVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEFVN F HGSLVM+
Sbjct: 956 AVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ 1015
Query: 975 -LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRS 1033
L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK VG + H WRS
Sbjct: 1016 NLGETSPPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDVQNRLNKVIKSVGKIEHSFWRS 1075
Query: 1034 FNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNV----------SVEELCKRVEE 1083
F+ E+KT A F+DGDLIESFLD+SR +M E+ + + +V++L K VEE
Sbjct: 1076 FHTERKTEPATGFIDGDLIESFLDISRPKMQEVIANLQIDDGSGMKRETTVDDLIKVVEE 1135
Query: 1084 LTRLH 1088
LTR+H
Sbjct: 1136 LTRIH 1140
>sp|Q9ESW0|DDB1_RAT DNA damage-binding protein 1 OS=Rattus norvegicus GN=Ddb1 PE=2 SV=1
Length = 1140
Score = 1193 bits (3086), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 598/1145 (52%), Positives = 796/1145 (69%), Gaps = 67/1145 (5%)
Query: 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
+NYVVTA KPT V G+FTS +++NL+IAK TR+EI+++T +GL+P+ +V +YG+IA
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDINLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIA 62
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIG 121
+ELFRP GE++D LFI T +Y C+L++ ES ++ITRA G+V DRIGRP++ G IG
Sbjct: 63 VMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIG 122
Query: 122 IIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181
IIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC PTI +Y
Sbjct: 123 IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVY 182
Query: 182 QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS 241
QD + RHVKTYEV+L++K+F +GPW Q N++ A ++I VP P G +IIG+E+I Y +
Sbjct: 183 QDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHN 241
Query: 242 ANAFKAIP---IRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKE-----KVTGLK 293
+ + AI I+ S + RVD +GSRYLLGD G L +L++ E++ + L+
Sbjct: 242 GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR 301
Query: 294 IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVD 353
+ELLGETSIA ++YLDN VV++GS GDSQ +KLN+ + +GSYV +E + NLGPIVD
Sbjct: 302 VELLGETSIAECLTYLDNGVVFVGSRLGDSQPVKLNVDSNEQGSYVVAMETFTNLGPIVD 361
Query: 354 FCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPF 413
CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS +
Sbjct: 362 MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRET 421
Query: 414 DTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVS 473
D LV+SF+ +TR+L +N E E+EETE+ GF QT FC + + QL+Q+TS SVRLVS
Sbjct: 422 DDTLVLSFVGQTRVLMLNGE-EVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 480
Query: 474 STSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIS 533
+ L +EWK P +++VA+ N+SQV++A G L YL+I L ++ H ++E+E++
Sbjct: 481 QEPKALVSEWKEPRAKNISVASCNSSQVVVAVGRA-LYYLQIHPQELRQISHTEMEHEVA 539
Query: 534 CLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGI 593
CLD+ P+G++ S + A+G+WTDIS RI LP L+ KE LGGEIIPRS+L+ FE
Sbjct: 540 CLDVTPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESS 599
Query: 594 SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI 653
YLLCALGDG L F LN++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTVI
Sbjct: 600 HYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVI 659
Query: 654 YSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE 713
YSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGT+++IQKLHIR++P+ E
Sbjct: 660 YSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANTSTLTIGTMNEIQKLHIRTVPIYE 719
Query: 714 HPRRICHQEQSRTFAICSLK---------------------------------------N 734
PR+IC+QE S+ F + S +
Sbjct: 720 SPRKICYQEVSQCFGVLSTRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSAAPHE 779
Query: 735 QSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPE 794
S EE E+H + ++D TFE + + EY S++SC D N Y+ VGTA V PE
Sbjct: 780 TSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPE 839
Query: 795 ENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDG 854
E EP +GRI+VF GKLQ +AEKE KGAVYS+ FNGKLLA+IN ++LY+W
Sbjct: 840 EAEPKQGRIVVFQYSGGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTE--- 896
Query: 855 TRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMS 914
+EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG EE ARD+N NWMS
Sbjct: 897 -KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMS 955
Query: 915 AVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR 974
AVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEFVN F HGSLVM+
Sbjct: 956 AVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ 1015
Query: 975 -LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRS 1033
L ++ +V+ GTVNG+IG++ SL Y L +Q L KVIK VG + H WRS
Sbjct: 1016 NLGETSTPTQGSVLLGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRS 1075
Query: 1034 FNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN----------VSVEELCKRVEE 1083
F+ E+KT A F+DGDLIESFLD+SR +M E+ + + ++L K VEE
Sbjct: 1076 FHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEE 1135
Query: 1084 LTRLH 1088
LTR+H
Sbjct: 1136 LTRIH 1140
>sp|Q9XYZ5|DDB1_DROME DNA damage-binding protein 1 OS=Drosophila melanogaster GN=pic PE=1
SV=1
Length = 1140
Score = 1021 bits (2641), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/1149 (46%), Positives = 746/1149 (64%), Gaps = 77/1149 (6%)
Query: 5 NYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIAT 64
+YVVTA KPT V GNFTSP +LNLIIA+ ++EI L+TP+GL+P+ ++ I G IA
Sbjct: 4 HYVVTAQKPTAVVACLTGNFTSPTDLNLIIARNNQVEIDLVTPEGLRPLKEININGTIAV 63
Query: 65 LELFRPHGEAQDFLFIATERYKFCVLQWDAESS--ELITRAMGDVSDRIGRPTDNGQIGI 122
+ FRP +D LFI T RY +L+ + ++T+A G+VSD +G P++ G I
Sbjct: 64 MRHFRPPDSNKDLLFILTRRYNVMILEARMVNDVITVVTKANGNVSDSVGIPSEGGVIAA 123
Query: 123 IDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLYQ 182
IDP R+IG+ LY GLF +IP D +A N+R++EL V D++FL+GC PT++V+++
Sbjct: 124 IDPKARVIGMCLYQGLFTIIPMDKDASELKATNLRMDELNVYDVEFLHGCLNPTVIVIHK 183
Query: 183 DNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCSA 242
D+ D RHVK++E+ L+DK+F++ W Q+N++ A +LIPVP P+ GV++IG E+IVY
Sbjct: 184 DS-DGRHVKSHEINLRDKEFMKIAWKQDNVETEATMLIPVPSPIGGVIVIGRESIVYHDG 242
Query: 243 NAFKAIP---IRPSITKAYGRVDADGSRYLLGDHAGLLHLLVI-THEKEK---VTGLKIE 295
+ + A+ R S Y RV ++G RYLLG+ G L++L + T E K V +K+E
Sbjct: 243 SNYHAVAPLTFRQSTINCYARVSSNGLRYLLGNMDGQLYMLFLGTAETSKGVTVKDIKVE 302
Query: 296 LLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFC 355
LGE SI I+YLDN +YIG+ +GDSQL++LN + GSYV +E + NL PI+D
Sbjct: 303 QLGEISIPECITYLDNGFLYIGARHGDSQLVRLNSEA-IDGSYVVPVENFTNLAPILDIA 361
Query: 356 VVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDD-PFD 414
VVDL+RQGQGQ++TCSG++KDGSLRI+R GIGI E A ++L GIKGMWSL+ D+ P++
Sbjct: 362 VVDLDRQGQGQIITCSGSFKDGSLRIIRIGIGIQEHACIDLPGIKGMWSLKVGVDESPYE 421
Query: 415 TFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSS 474
LV++F+ TRIL ++ E E+EETEI GF S QT C + Y+QL+QVTS SVRLVSS
Sbjct: 422 NTLVLAFVGHTRILTLSGE-EVEETEIPGFASDLQTFLCSNVDYDQLIQVTSDSVRLVSS 480
Query: 475 TSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISC 534
++ L EW+ ++ V + N +Q+L+A+ + Y+ I DG L E L YE++C
Sbjct: 481 ATKALVAEWRPTGDRTIGVVSCNTTQILVASAC-DIFYIVIEDGSLREQSRRTLAYEVAC 539
Query: 535 LDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGIS 594
LDI P+ E S + AVG+WTDIS I SLPDL I E L GEIIPRS+L+ FEGI
Sbjct: 540 LDITPLDETQKKSDLVAVGLWTDISAVILSLPDLETIYTEKLSGEIIPRSILMTTFEGIH 599
Query: 595 YLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIY 654
YLLCALGDG + F+++ TG+LTD+KKV+LGTQP TLRTF S +TT+VFA SDRPTVIY
Sbjct: 600 YLLCALGDGSMYYFIMDQTTGQLTDKKKVTLGTQPTTLRTFRSLSTTNVFACSDRPTVIY 659
Query: 655 SSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEH 714
SSN KL++SNVNLKEV+HMC N+ A+PDSLA+A + + +GTID+IQKLHIR++PLGE
Sbjct: 660 SSNHKLVFSNVNLKEVNHMCSLNAQAYPDSLALANKNAVILGTIDEIQKLHIRTVPLGEG 719
Query: 715 PRRICHQEQSRTFAICSLK----------------------------------------- 733
PRRI +QE S+TFA+ +L+
Sbjct: 720 PRRIAYQESSQTFAVSTLRIDVHGRGGAKPLRNSASTQAQNITCSSNFLPKPGGGNSTAA 779
Query: 734 NQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLP 793
N +E ++H + ++D TFE + + E S++S DD N YY V T+ V+P
Sbjct: 780 NAEVGQEIDVHNLLVIDQNTFEVLHAHQFVAPETISSLMSAKLGDDPNTYYVVATSLVIP 839
Query: 794 EENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDD 853
EE EP GRI++F + KL +AE + G Y+L FNGK+LA I ++LY+W
Sbjct: 840 EEPEPKVGRIIIFHYHENKLTQVAETKVDGTCYALVEFNGKVLAGIGSFVRLYEWT---- 895
Query: 854 GTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWM 913
+EL+ EC I AL+++ +GDFI+VGDLM+SI+LL +K EG E ARD WM
Sbjct: 896 NEKELRMECNIQNMIAALFLKAKGDFILVGDLMRSITLLQHKQMEGIFVEIARDCEPKWM 955
Query: 914 SAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVM 973
AVEILDDD +LG+E N NLF +K+S TDEER L + +HLG+ VN FRHGSLVM
Sbjct: 956 RAVEILDDDTFLGSETNGNLFVCQKDSAATTDEERQLLPELARFHLGDTVNVFRHGSLVM 1015
Query: 974 RLPDSDVGQIPT-----VIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNH 1028
+ +VG+ T V++GT NG IG++ +P + Y FL L+ L+K+IK VG + H
Sbjct: 1016 Q----NVGERTTPINGCVLYGTCNGAIGIVTQIPQDFYDFLHGLEERLKKIIKSVGKIEH 1071
Query: 1029 EQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVS---------VEELCK 1079
+R+F K ++ F+DGDLIESFLDLSR +M + + + ++ VE++ K
Sbjct: 1072 TYYRNFQINSKVEPSEGFIDGDLIESFLDLSRDKMRDAVQGLELTLNGERKSADVEDVIK 1131
Query: 1080 RVEELTRLH 1088
VE+LTR+H
Sbjct: 1132 IVEDLTRMH 1140
>sp|B0M0P5|DDB1_DICDI DNA damage-binding protein 1 OS=Dictyostelium discoideum GN=repE PE=1
SV=1
Length = 1181
Score = 994 bits (2571), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/1188 (44%), Positives = 757/1188 (63%), Gaps = 114/1188 (9%)
Query: 3 IWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRI 62
++N+V T KPT+VTHS GNFT P + NLII+KCT+IEI L+ GL+PM DV IYGRI
Sbjct: 1 MYNFVSTVQKPTSVTHSVTGNFTGPNDKNLIISKCTKIEIFLMDQDGLKPMFDVNIYGRI 60
Query: 63 ATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIGRPTDNGQIGI 122
+ L+LF G QD+LFI+TE +KFC+L +D E E+IT+A G+ D IGRPT+ GQ+GI
Sbjct: 61 SVLKLFSVAGSKQDYLFISTESFKFCILAYDYEKKEIITKASGNAEDTIGRPTEAGQLGI 120
Query: 123 IDPDCRLIGLHLYDGLFKVIPFDNKGQL-------------------------------- 150
IDPD R++ LHLY+GL K+I DN
Sbjct: 121 IDPDGRIVALHLYEGLLKLITLDNNNTPNKINNNNNNNNNNNNNNNNNNNNNINNNNFNI 180
Query: 151 ----------KEAFNIRLEELQVLDIKFLYGCAKPTIVVLYQDNKDARHVKTYEVALKDK 200
K N+RLEELQVLD+ FLYGC PTI VL++D KD +H+ TYE++ KD
Sbjct: 181 NNNNNNSPIQKNVNNVRLEELQVLDMTFLYGCKVPTIAVLFKDTKDEKHISTYEISSKDT 240
Query: 201 DFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCSANAFKAIPIRPSITKAYGR 260
+ V GPWSQ+N+ + LL+PVP L GVL++ + I Y + +++ + + A+ R
Sbjct: 241 ELVVGPWSQSNVGVYSSLLVPVP--LGGVLVVADNGITYLNGKVTRSVAVSYTKFLAFTR 298
Query: 261 VDADGSRYLLGDHAGLLHLLVITHEKEKVTGLKIELLGETSIASTISYLDNAVVYIGSSY 320
VD DGSR+L GDH G L +LV+ H+++KV LK E LG SI S+ISYLD+ VVYIGSS
Sbjct: 299 VDKDGSRFLFGDHFGRLSVLVLIHQQQKVMELKFEQLGRISIPSSISYLDSGVVYIGSSS 358
Query: 321 GDSQLIKLNLQPD-AKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSL 379
GDSQLI+LN + D SYV LE + N+GP+VDFCVVD E+QGQ Q+VTCSG Y+DGSL
Sbjct: 359 GDSQLIRLNTEKDQTTDSYVTYLEAFTNIGPVVDFCVVDAEKQGQAQIVTCSGTYRDGSL 418
Query: 380 RIVRNGIGINEQASVELQGIKGMWSL---------------------RSSTDDPFDTFLV 418
RI+RNGIGI EQAS+EL+GIKG++ + + D D +L+
Sbjct: 419 RIIRNGIGIAEQASIELEGIKGIFPINNNNNNNNNNNNNNNNNNNNNSNGITDSKDRYLI 478
Query: 419 VSFISETRILAMNLEDELEETEIEGFCSQTQTLFCH--DAIYNQLVQVTSGSVRLVSSTS 476
SFI T++L+ +E+EETE EG S TL+C D + N L+Q+T+ S+ L+ S +
Sbjct: 479 TSFIECTKVLSFQ-GEEIEETEFEGLESNCSTLYCGTIDKL-NLLIQITNVSINLIDSNT 536
Query: 477 RELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEI--GDGILTEVKHAQLEYEISC 534
+ ++W P +N+ + N Q++L+ L+Y +I + + VK +L +EISC
Sbjct: 537 FKRVSQWNVEPSRRINLVSTNQDQIVLSIDKS-LLYFQINSSNKSIQLVKEIELPHEISC 595
Query: 535 LDINPIGE-NPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGI 593
+DI+P + SQ+ +VG+W DI++RIF LP L I KE LGGEI+PRS+L+ +F+ I
Sbjct: 596 IDISPFDSFMDTKSQLVSVGLWNDITLRIFKLPTLEEIWKEPLGGEILPRSILMISFDSI 655
Query: 594 SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI 653
Y+ C+LGDGHL F + + +L D++K++LGTQPI L+ F KNT ++FA SDRPTVI
Sbjct: 656 DYIFCSLGDGHLFKFQFDFSSFKLFDKRKLTLGTQPIILKKFKLKNTINIFAISDRPTVI 715
Query: 654 YSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE 713
YS NKKL YS VNLK+V+++ FNS FP+S+AIA LTIGTID+IQKLHI++IPL E
Sbjct: 716 YSHNKKLFYSVVNLKDVTNVTSFNSDGFPNSMAIATTNSLTIGTIDEIQKLHIKTIPLNE 775
Query: 714 H-PRRICHQEQSRTFAICSLKNQS---------CAEESEMHFVRLLDDQTFEFISTYPLD 763
RRI H E +A+ ++KN C E+ E+ ++R+ +DQTFE IS+Y LD
Sbjct: 776 EMGRRIVHLEDHSCYAVITVKNNEGLLGGAQDLCEEDEEVSYIRIYNDQTFELISSYKLD 835
Query: 764 TFEYGCSILSCSFS-DDSNVYYCVGTAYVLPEENEPTKGRILVFIV-------------- 808
+E G SI C F+ DD N Y VGT+ P + + GR+L+F +
Sbjct: 836 PYEMGWSITPCKFAGDDVNTYLAVGTSINTPIK---SSGRVLLFSLSSSSSSNDKDSLDN 892
Query: 809 ---------EDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWM-LRDDGTREL 858
+GKL L+ E + + +VY L +FNG+L+AA+++++ ++ ++ + +
Sbjct: 893 NNNNNNNSGANGKLTLLEEIKFRSSVYFLLSFNGRLIAAVHKRLFSIRYTHSKEKNCKVI 952
Query: 859 QSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEI 918
SE H GH + L + +RG FI+VGD+MKS+SLL+ + +G++E+ AR+ W+ +V +
Sbjct: 953 SSESVHKGHTMILKLASRGHFILVGDMMKSMSLLV-EQSDGSLEQIARNPQPIWIRSVAM 1011
Query: 919 LDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDS 978
++DD ++GAE + N V+KN++ + ER L+ VG YH+GE +N RHGSLV RLPDS
Sbjct: 1012 INDDYFIGAEASNNFIVVKKNNDSTNELERELLDSVGHYHIGESINSMRHGSLV-RLPDS 1070
Query: 979 DVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEK 1038
D IPT+++ +VNG IGV+AS+ E ++F KLQ L +V++GVGG +HE WR+F+N+
Sbjct: 1071 DQPIIPTILYASVNGSIGVVASISEEDFIFFSKLQKGLNQVVRGVGGFSHETWRAFSNDH 1130
Query: 1039 KTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELTR 1086
T+D+KNF+DGDLIE+FLDL + + ++ ++ +R+E L +
Sbjct: 1131 HTIDSKNFIDGDLIETFLDLKYESQLKAVADLGITPDDAFRRIESLMQ 1178
>sp|Q21554|DDB1_CAEEL DNA damage-binding protein 1 OS=Caenorhabditis elegans GN=ddb-1 PE=1
SV=2
Length = 1134
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/1148 (34%), Positives = 640/1148 (55%), Gaps = 81/1148 (7%)
Query: 5 NYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIAT 64
+Y V+A K + V S VGNFT + +NLI+A+ RI++ L++P+GL+ + ++PIYG++ T
Sbjct: 4 SYCVSAKKASVVVESVVGNFTGHENVNLIVARGNRIDVQLVSPEGLKNVCEIPIYGQVLT 63
Query: 65 LELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIGRPTDNGQIGIID 124
+ L + + + L + TE++ +L + +++TRA G ++D GR TDN +
Sbjct: 64 IALVKCKRDKRHSLIVVTEKWHMAILAY--RDGKVVTRAAGCIADPTGRATDN-LFSLTI 120
Query: 125 PDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL-YGCAKPTIVVLYQD 183
LI + ++G K+I +++ L+ FN+R + V D KF+ G V D
Sbjct: 121 HRNGLIAIRAFEGSVKMIQWESGTDLRH-FNVRFDYPNVSDFKFVDTGEDDVYRVAFIYD 179
Query: 184 NKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVY-CSA 242
+ +H++ ++ + DK+F Q ++ + +LIPVP + GV+++G +++Y +
Sbjct: 180 DDHGKHLQFSDLNMHDKEF-RTYSRQASIAADSSVLIPVPHAIGGVIVLGSNSVLYKPND 238
Query: 243 NAFKAIPIRPSITK-----AYGRVDADGSRYLLGDHAG-LLHLLVITHEKEK---VTGLK 293
N + +P S+ + +G VDA G R+LL D G LL LL+ E + V ++
Sbjct: 239 NLGEVVPYTCSLLENTTFTCHGIVDASGERFLLSDTDGRLLMLLLNVTESQSGYTVKEMR 298
Query: 294 IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVD 353
I+ LGETSIA +I+Y+DN VV++GS GDSQLI+L +P+ GSY +LE Y N+GPI D
Sbjct: 299 IDYLGETSIADSINYIDNGVVFVGSRLGDSQLIRLMTEPNG-GSYSVILETYSNIGPIRD 357
Query: 354 FCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPF 413
+V E GQ Q+VTC+GA KDGSLR++RNGIGI+E ASV+L G+ G++ +R D
Sbjct: 358 MVMV--ESDGQPQLVTCTGADKDGSLRVIRNGIGIDELASVDLAGVVGIFPIR--LDSNA 413
Query: 414 DTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAI----YNQLVQVTSGSV 469
D +++VS ET +L + E ELE+ ++ + T+F ++Q T +
Sbjct: 414 DNYVIVSLSDETHVLQITGE-ELEDVKLLEINTDLPTIFASTLFGPNDSGIILQATEKQI 472
Query: 470 RLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYL------EIGDGILTEV 523
RL+SS+ L W+ G ++ + NA+ + VYL E+G +
Sbjct: 473 RLMSSSG--LSKFWEPTNGEIISKVSVNAANGQIVLAARDTVYLLTCIVDEMGALDIQLT 530
Query: 524 KHAQLEYEISCLDINPIGENPS-YSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIP 582
+ E EI+CLD++ G++P+ + + W+ ++ + LPDL + L +IIP
Sbjct: 531 AEKKFENEIACLDLSNEGDDPNNKATFLVLAFWSTFAMEVIQLPDLITVCHTDLPTKIIP 590
Query: 583 RSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTH 642
RS++ E + YLL A GDG L+ ++ ++KTG + KK ++GT+P +L +KN H
Sbjct: 591 RSIIATCIEEVHYLLVAFGDGALVYYVFDIKTGTHGEPKKSNVGTRPPSLHRVRNKNRQH 650
Query: 643 VFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQ 702
+F SDRP +I+S++KKL++SNVN+K V +C +S+A+ D L I+ + GT+DDIQ
Sbjct: 651 LFVCSDRPVIIFSASKKLVFSNVNVKLVDTVCSLSSSAYRDCLVISDGNSMVFGTVDDIQ 710
Query: 703 KLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEE---SEMHFVR------------ 747
K+H+RSIP+GE RI +Q+ + T+ +CS + +S AE S+ V
Sbjct: 711 KIHVRSIPMGESVLRIAYQKSTSTYGVCSNRTESKAERVFASKNALVTSQSRPKVASTRA 770
Query: 748 --------------LLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLP 793
+LD TF+ + ++ +E S +S F++DS+ YY VGT + P
Sbjct: 771 DMDESPPNTTSSFMVLDQNTFQVLHSHEFGPWETALSCISGQFTNDSSTYYVVGTGLIYP 830
Query: 794 EENEPTKGRILVFIVED---GKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWML 850
+E E GRI+VF V+D KL+ + E +G+ ++ NGKL+AAIN I+L++W
Sbjct: 831 DETETKIGRIVVFEVDDVERSKLRRVHELVVRGSPLAIRILNGKLVAAINSSIRLFEWTT 890
Query: 851 RDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNA 910
+EL+ EC H++AL ++ + + V D+M+S+SLL Y+ EG EE A+D+N+
Sbjct: 891 ----DKELRLECSSFNHVIALDLKVMNEEVAVADVMRSVSLLSYRMLEGNFEEVAKDWNS 946
Query: 911 NWMSAVEILDDDIYLGAENNFNLFTVR-KNSEGATDEERGRLEVVGEYHLGEFVNRFRHG 969
WM E + + LG E + NLFTV + TD+ R LE G ++LGE
Sbjct: 947 QWMVTCEFITAESILGGEAHLNLFTVEVDKTRPITDDGRYVLEPTGYWYLGELPKVMTRS 1006
Query: 970 SLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHE 1029
+LV++ DS + ++FGT G IG+I + + FL ++ + +K + H
Sbjct: 1007 TLVIQPEDSIIQYSQPIMFGTNQGTIGMIVQIDDKWKKFLIAIEKAIADSVKNCMHIEHS 1066
Query: 1030 QWRSFNNEKKTVDAKNFLDGDLIESFLDLSRT-RMDEISKTMNVSVE--------ELCKR 1080
+R+F +K+ F+DGDL+ES LD+ R+ MD +SK + + E+ K
Sbjct: 1067 SYRTFVFQKRAEPPSGFVDGDLVESILDMDRSVAMDILSKVSDKGWDPSLPRDPVEILKV 1126
Query: 1081 VEELTRLH 1088
+E+L R+H
Sbjct: 1127 IEDLARMH 1134
>sp|O13807|DDB1_SCHPO DNA damage-binding protein 1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ddb1 PE=1 SV=1
Length = 1072
Score = 430 bits (1105), Expect = e-119, Method: Compositional matrix adjust.
Identities = 309/1125 (27%), Positives = 575/1125 (51%), Gaps = 98/1125 (8%)
Query: 6 YVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIATL 65
YV HKP+++ ++ F + N+I+AK +E++ L + I+ +I +
Sbjct: 3 YVTYLHKPSSIRNAVFCKFVNASSWNVIVAKVNCLEVYSYENNRLCLITSANIFAKIVNV 62
Query: 66 ELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITR-AMGDVSDRIGRPTDNGQIGIID 124
+ F+P D + +AT+ +++ L WDA + + + D S+R R + +G + ++D
Sbjct: 63 KAFKPVSSPTDHIIVATDSFRYFTLFWDANDNTVSNGIKIQDCSERSLRESQSGPLLLVD 122
Query: 125 PDCRLIGLHLYDGLFKVIPF----------DNKGQLKEAFNIRLEELQVLDIKFLYGCAK 174
P R+I LH+Y GL +IP N L + F++R++EL V+DI LY ++
Sbjct: 123 PFQRVICLHVYQGLLTIIPIFKSKKRFMTSHNNPSLHDNFSVRIQELNVVDIAMLYNSSR 182
Query: 175 PTIVVLYQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGE 234
P++ VLY+D+K H+ TY++ +++++ E ++++ G +P GV + GE
Sbjct: 183 PSLAVLYKDSKSIVHLSTYKINVREQEIDEDDVVCHDIEEGK----LIPSENGGVFVFGE 238
Query: 235 ETIVYCSAN--------AFKAIPIRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEK 286
+ Y S + + PSI+ D S Y++ D +G+L+
Sbjct: 239 MYVYYISKDIQVSKLLLTYPITAFSPSISND-PETGLDSSIYIVADESGMLYKFKALFTD 297
Query: 287 EKVTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSY-VEVLERY 345
E V+ +++E LGE+SIAS + L + +++GS + +S L L L K ++ +E+L+ +
Sbjct: 298 ETVS-MELEKLGESSIASCLIALPDNHLFVGSHFNNSVL--LQLPSITKNNHKLEILQNF 354
Query: 346 VNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSL 405
VN+ PI DF + D Q ++TCSGAYKDG+LRI+RN I I A +E++GIK +S+
Sbjct: 355 VNIAPISDFIIDD--DQTGSSIITCSGAYKDGTLRIIRNSINIENVALIEMEGIKDFFSV 412
Query: 406 RSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDA------IY- 458
+ +D ++ +S I ETR + ++ EG S L C ++ IY
Sbjct: 413 SFRAN--YDNYIFLSLICETRAIIVSP---------EGVFSANHDLSCEESTIFVSTIYG 461
Query: 459 -NQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGD 517
+Q++Q+T+ +RL + W SP S+ ++ A V +A GG +++ E
Sbjct: 462 NSQILQITTKEIRLFDGKK---LHSWISP--MSITCGSSFADNVCVAVAGGLILFFE--- 513
Query: 518 GILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWT-DISVRIFSLPDLNLITKEHL 576
GI TEV Q + E+S L EN Y VG+W+ DI + + ++L L
Sbjct: 514 GI-TEVGRYQCDTEVSSLCFTE--ENVVY-----VGLWSADIIMLTYCQDGISLTHSLKL 565
Query: 577 GGEIIPRSVLLCAFEGIS--YLLCALGDGHLLNFLLNMKTGELTDR--KKVSLGTQPITL 632
IPRS++ G L + +G++L F N + G++ + ++ LG PI L
Sbjct: 566 TD--IPRSIVYSQKYGDDGGTLYVSTNNGYVLMF--NFQNGQVIEHSLRRNQLGVAPIIL 621
Query: 633 RTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGE 692
+ F SK +FA ++P ++Y + KL+ + ++ E+ ++ + + + ++
Sbjct: 622 KHFDSKEKNAIFALGEKPQLMYYESDKLVITPLSCTEMLNISSYVNPSLGVNMLYCTNSY 681
Query: 693 LTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCA--EESEMHFVRLLD 750
+++ + +I+ L+++++ + PRRIC F +C +S E+ + F+R+ +
Sbjct: 682 ISLAKMSEIRSLNVQTVSVKGFPRRICSNSLFY-FVLCMQLEESIGTQEQRLLSFLRVYE 740
Query: 751 DQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVF-IVE 809
T I+ + + +E SI+ +DD V VGT + P+++ P GR++VF +
Sbjct: 741 KNTLSEIAHHKFNEYEMVESII--LMNDDKRV--VVGTGFNFPDQDAPDSGRLMVFEMTS 796
Query: 810 DGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHIL 869
D +++ AE + +G+V +L + ++A IN + ++++ + GT +++ + +
Sbjct: 797 DNNIEMQAEHKVQGSVNTLVLYKHLIVAGINASVCIFEY---EHGTMHVRNSIRTPTYTI 853
Query: 870 ALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAEN 929
+ V D I+ DLMKSI++L + ++ + E ARDY+ W ++VEIL + Y E
Sbjct: 854 DISVNQ--DEIIAADLMKSITVLQFIDDQ--LIEVARDYHPLWATSVEILSERKYFVTEA 909
Query: 930 NFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFG 989
+ N + +++ +R +L +++LGE +N+ RH + + P P ++
Sbjct: 910 DGNAVILLRDNVSPQLSDRKKLRWYKKFYLGELINKTRHCTFIE--PQDKSLVTPQLLCA 967
Query: 990 TVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDG 1049
TV+G + ++ L +LQ N+RKVI GGL+H++W+ + E +T + +DG
Sbjct: 968 TVDGSLMIVGDAGMSNTPLLLQLQDNIRKVIPSFGGLSHKEWKEYRGENET-SPSDLIDG 1026
Query: 1050 DLIESFLDLSRTRMDEI------SKTMNVSVEELCKRVEELTRLH 1088
LIES L L ++EI +++SV++L +E L +LH
Sbjct: 1027 SLIESILGLREPILNEIVNGGHEGTKLDISVQDLKSIIENLEKLH 1071
>sp|Q54SA7|SF3B3_DICDI Probable splicing factor 3B subunit 3 OS=Dictyostelium discoideum
GN=sf3b3 PE=3 SV=1
Length = 1256
Score = 249 bits (636), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 286/1280 (22%), Positives = 541/1280 (42%), Gaps = 228/1280 (17%)
Query: 3 IWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQG-LQPMLDVPIYGR 61
++ Y +T +PT+V S GNF+ +++ +++ +E+ G +Q +L ++G
Sbjct: 1 MYLYNLTLQRPTSVYQSISGNFSGTKQVEIVLNHGRSLELIRYDENGKMQSVLYTEVFGI 60
Query: 62 IATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIG-RPTDNGQI 120
+ ++ FR +D++ + ++ + +L+++++ ++ + + R G R GQ
Sbjct: 61 VRSIIPFRLTSGTKDYIIVGSDSGRVVILEYNSQKNQF-DKIHQETFGRSGCRRIVPGQY 119
Query: 121 GIIDPDCR--LIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLY-----GCA 173
+DP R +IG L ++ D+ L + LE + I F G
Sbjct: 120 LAVDPKGRAFMIGAIEKQKLVYILNRDSSANL--TISSPLEAHKSNTIVFSMCGVDVGFD 177
Query: 174 KP---TIVVLYQDN---------------------KDARHVKTYEVALKDKDFVEGPWSQ 209
P TI V Y + K + + YE+ L + V WS
Sbjct: 178 NPIFATISVDYTEEDSSSGGGGGGSIEEMMDEDIGKKKKLLTYYELDLGLNNVVR-KWS- 235
Query: 210 NNLDNGADLLIPVPPPL---CGVLIIGEETIVYCSANAFKAIPIRPSITKAYGRVDADGS 266
+ +D+ A++++ VP GVL+ E+ IVY + + + +R I + YG G
Sbjct: 236 DQVDDSANIVMTVPGGTEGPGGVLVASEDYIVYRNQDHAE---VRSRIPRRYGSDPNKGV 292
Query: 267 R--------------YLLGDHAGLLHLLVITHEKEKVTGLKIELLGETSIASTISYLDNA 312
+L+ G L+ + + ++ ++V+ + + +A+ ++ L N
Sbjct: 293 LIISHSSHKQKGMFFFLVQSEHGDLYKITLDYQGDQVSEVNVNYFDTIVLANCLTVLKNG 352
Query: 313 VVYIGSSYGDSQLI----------------------KLNLQP-DAKGSYVEVLE------ 343
++ S +GD L L P ++ G+ +E L+
Sbjct: 353 FLFAASEFGDHTLYFFKSIGDEEEEGQAKRLEDKDGHLWFTPRNSCGTKMEELKNLEPTS 412
Query: 344 RYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI-KGM 402
+L PI+DF V+DL R+ Q+ + G + SL+++R+G+ + + L G+ G+
Sbjct: 413 HLSSLSPIIDFKVLDLVREENPQLYSLCGTGLNSSLKVLRHGLSVTTITTANLPGVPSGI 472
Query: 403 WSLRSSTD----DPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIY 458
W++ ST D D ++VVSF+ T +L++ D ++E G T TL
Sbjct: 473 WTVPKSTSPNAIDQTDKYIVVSFVGTTSVLSVG--DTIQENHESGILETTTTLLVKSMGD 530
Query: 459 NQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDG 518
+ ++QV R + S R NEW++P ++ A+AN SQ+ +A GG ++Y E+
Sbjct: 531 DAIIQVFPTGFRHIKSDLR--INEWRAPGRKTIVRASANQSQLAIALSGGEIIYFELDQA 588
Query: 519 I-LTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHL- 576
L E+ L +I+C++I+PI + + ++ AV W +R+ SL N + + +
Sbjct: 589 SNLIEIIKKDLRRDIACIEISPIPKGRNMARFIAVSDWEG-PIRVLSLDRDNCLGQVSML 647
Query: 577 -GGEIIPRSVLLCAFE----GIS-------------------------------YLLCAL 600
++ S+ + + GI +L L
Sbjct: 648 DTDKVYIESLSIIEMQLNEMGIETKKSQSQTGQTTTTTTSTSSASSSVTSGGSLFLFVGL 707
Query: 601 GDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKL 660
+G + L+ TGEL+D + LG +P+ L + + + A S R + Y + KL
Sbjct: 708 KNGVVKRATLDSVTGELSDIRTRLLGRKPVKLFKVKVRGSNAMLALSSRVWLNYINQGKL 767
Query: 661 LYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKL-HIRSIPLGEHPRR-I 718
++++ + + +S +S+ E ++ I +ID + L + +I L P+R I
Sbjct: 768 DIVPLSIEPLENASNLSSEQSAESIVATSENKIIIFSIDKLGDLFNQETIKLNATPKRFI 827
Query: 719 CHQEQSRTFAICSLKN--------QSCAEESEM--------------------------- 743
H + S + + N E+SE
Sbjct: 828 IHPQTSYIIILETETNYNTDNIDIDKINEQSEKLLLEKQKELQQEMDIDDDDQNNNNEIE 887
Query: 744 ----------------HFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVG 787
+++++D T E + + L+ E G S+ +CSF + ++ VG
Sbjct: 888 PFKKLFKPKAGKGKWKSYIKIMDPITHESLESLMLEDGEAGFSVCTCSFGESGEIFLVVG 947
Query: 788 --TAYVL-PEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQ 844
T VL P+ ++ + FI KL+L+ + E + VY++ F GKL+ + + I+
Sbjct: 948 CVTDMVLNPKSHKSAHLNLYRFIDGGKKLELLYKTEVEEPVYAMAQFQGKLVCGVGKSIR 1007
Query: 845 LYKWMLRDDGTRELQSECGHHGHILALY-VQTRGDFIVVGDLMKSISLLIYKHEEGAIEE 903
+Y D G ++L +C + + + GD +VVGD+ +SI + YK E +
Sbjct: 1008 IY-----DMGKKKLLRKCETKNLPNTIVNIHSLGDRLVVGDIQESIHFIKYKRSENMLYV 1062
Query: 904 RARDYNANWMSAVEILDDDIYLGAENNFNLFTVR------------------KNSEGATD 945
A D WM++ +LD D GA+ N+F +R K G +
Sbjct: 1063 FADDLAPRWMTSSVMLDYDTVAGADKFGNIFVLRLPLLISDEVEEDPTGTKLKFESGTLN 1122
Query: 946 EERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIG-VIASLPHE 1004
+L+ + + +G+ V SLV VG +++ T++G IG +I E
Sbjct: 1123 GAPHKLDHIANFFVGDTVTTLNKTSLV-------VGGPEVILYTTISGAIGALIPFTSRE 1175
Query: 1005 QYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMD 1064
F L+ N+R + G +H +RS+ KN +DGDL E F L+ +
Sbjct: 1176 DVDFFSTLEMNMRSDCLPLCGRDHLAYRSY-----YFPVKNIIDGDLCEQFSTLNYQKQL 1230
Query: 1065 EISKTMNVSVEELCKRVEEL 1084
IS+ ++ S E+ K++EE+
Sbjct: 1231 SISEELSRSPSEVIKKLEEI 1250
>sp|Q4WLI5|RSE1_ASPFU Pre-mRNA-splicing factor rse1 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rse1 PE=3
SV=1
Length = 1225
Score = 235 bits (599), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 288/1224 (23%), Positives = 507/1224 (41%), Gaps = 173/1224 (14%)
Query: 2 SIWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTP-QG-LQPMLDVPIY 59
+++ Y +T PT +T + +G F +E ++ A +++ IH P QG + P+ ++
Sbjct: 6 NMFMYSLTIQPPTAITQAILGQFAGTKEQQIVTASGSKLTIHRPDPTQGKITPIYSQDVF 65
Query: 60 GRIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIG-RPTDNG 118
G I TL FR G ++D++ I ++ + ++++ S R + + G R G
Sbjct: 66 GIIRTLAAFRLAGSSKDYIIIGSDSGRITIIEY-VPSQNRFNRIHLETFGKSGVRRVVPG 124
Query: 119 QIGIIDPDCR--LIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL---YGCA 173
Q +DP R LI + L V+ +++ +L + + + Q + G
Sbjct: 125 QYLAVDPKGRACLIASVEKNKLVYVLNRNSQAELTISSPLEAHKPQTVVFAMTALDVGYE 184
Query: 174 KPTIVVLYQDNKDARHVKT-------------YEVALKDKDFVEGPWSQNNLDNGADLLI 220
P L D +A T YE+ L V W+ + +D A +L
Sbjct: 185 NPIFAALEVDYSEADQDPTGRAYEESEKLLVYYELDLGLNHVVRK-WA-DPVDRTASMLF 242
Query: 221 PVPPPL---CGVLIIGEETIVYCSAN--AFKA-IPIRPSITKAYGRVDADGSRYLLGDHA 274
VP GVL+ E+ I Y +N AF+ IP R T+ R + + +
Sbjct: 243 QVPGGADGPSGVLVCAEDNITYRHSNQDAFRVPIPRRIGATENPERKRSIVAGVMHKMRG 302
Query: 275 GLLHLL-------------VITHEKEKVTG----LKIELLGETSIASTISYLDNAVVYIG 317
LL ++ + ++TG LKI+ IAS++ L + +Y+
Sbjct: 303 AFFFLLQTEDGDLFKVTIDMVEDDNGQLTGEVKRLKIKYFDTVPIASSLLILKSGFLYVA 362
Query: 318 SSYGDSQLIKLN----------------------------LQPDAKGSYVEVLERYVNLG 349
S G+ + QP + ++E +L
Sbjct: 363 SEAGNHHFYQFEKLGDDDEETEFNSENFPADLSVPCEPVFFQPRG-AENLNLVETLNSLN 421
Query: 350 PIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI-KGMWSLRSS 408
P++D +V+L Q+ T SG+ S R +++G+ ++E EL + +W+ + +
Sbjct: 422 PLIDSKIVNLNEDDAPQIYTVSGSGARSSFRTLKHGLEVSEIVESELPSVPSAVWTTKLT 481
Query: 409 TDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGS 468
D FD ++++SF + T +L++ + +EE GF S TL + L+QV
Sbjct: 482 RADEFDAYIILSFANGTLVLSIG--ETVEEVTDTGFLSTAPTLAVQQLGEDSLIQVHPRG 539
Query: 469 VRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEI-GDGILTEV-KHA 526
+R + + R NEW +P S+ A N QV +A G +VY E+ DG L E +
Sbjct: 540 IRHILADRR--VNEWPAPQHRSIVAAATNERQVAVALSSGEIVYFEMDADGTLAEYDERR 597
Query: 527 QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL-PDLNLITKEHLGGEIIPRSV 585
Q+ ++CL + + E S AVG D +VRI SL PD L K P ++
Sbjct: 598 QMSGTVTCLSLGEVPEGRVRSSFLAVGC-DDSTVRILSLDPDSTLENKSVQALTSAPSAL 656
Query: 586 LLCAFEGIS------YLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKN 639
+ + S YL L G L +L+ TGEL+D + LG +P+ L S K
Sbjct: 657 NIMSMADSSSGGTTLYLHIGLYSGVYLRTVLDEVTGELSDTRTRFLGAKPVKLFRVSVKG 716
Query: 640 TTHVFAASDRPTVIYS--SNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGT 697
T V A S RP + YS K + + ++ + F+S + + + L I +
Sbjct: 717 QTAVLALSSRPWLGYSDIQTKGFMLTPLDYVGLEWGWNFSSEQCVEGMVGIQAQNLRIFS 776
Query: 698 IDDI-QKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVR--------- 747
I+ + + SIPL PRR+ + F + N + + +
Sbjct: 777 IEKLDNNILQESIPLSNTPRRMLKHPEQPLFYVIESDNNVLSPATRARLIEDSKARNGET 836
Query: 748 -LLDDQTFEF----------------------ISTYPLDTFEYGCSILSCSFSD-DSNVY 783
+L + F + IST L+ E S+ + FS D +
Sbjct: 837 NVLPPEDFGYPRATGHWASCIQIVDPLDAKAVISTIELEENEAAVSMAAVPFSSQDDETF 896
Query: 784 YCVGTAYVLPEENEPTKGRILVFIV---EDGK-LQLIAEKETKGAVYSLNAFNGKLLAAI 839
VGTA + N P+ + I EDGK L+ I + + + +L F G+LLA I
Sbjct: 897 LVVGTAKDM-IVNPPSSAGGFIHIYRFQEDGKELEFIHKTKVEEPPLALLGFQGRLLAGI 955
Query: 840 NQKIQLYKWMLRDDGTRELQSECGHHGHILALYV---QTRGDFIVVGDLMKSISLLIYKH 896
+++Y D G ++L +C +++ + QT+G IVV D+ +S++ ++YK+
Sbjct: 956 GSTLRIY-----DLGMKQLLRKC--QAQVVSKTIVGLQTQGSRIVVSDVRESVTYVVYKY 1008
Query: 897 EEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVR---KNSEGATDE------- 946
++ + D + W ++ ++D + G + NL+ VR K SE A ++
Sbjct: 1009 QDNILIPFVDDSVSRWTTSTTMVDYETVAGGDKFGNLWLVRCPKKASEEADEDGSGAHLI 1068
Query: 947 -ERG-------RLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVI 998
ERG RL+++ + + LV G +++ G IG++
Sbjct: 1069 HERGYLHGAPNRLDLMIHTYTQDIPTSLHKTQLV-------AGGRDILVWTGFQGTIGML 1121
Query: 999 AS-LPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLD 1057
+ E F + L+ L + G +H +RS+ K V +DGDL E +
Sbjct: 1122 VPFVSREDVDFFQNLEMQLASQCPPLAGRDHLIYRSYYAPVKGV-----IDGDLCEMYFL 1176
Query: 1058 LSRTRMDEISKTMNVSVEELCKRV 1081
L I+ ++ SV E+ +++
Sbjct: 1177 LPNDTKMMIAAELDRSVREIERKI 1200
>sp|Q1LVE8|SF3B3_DANRE Splicing factor 3B subunit 3 OS=Danio rerio GN=sf3b3 PE=2 SV=1
Length = 1217
Score = 231 bits (588), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 276/1241 (22%), Positives = 517/1241 (41%), Gaps = 195/1241 (15%)
Query: 6 YVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQG----LQPMLDVPIYGR 61
Y +T + T ++H+ GNF+ ++ +++++ +E LL P + +L + ++G
Sbjct: 4 YNITLQRATGISHAIHGNFSGTKQQEIVVSRGKILE--LLRPDANTGKVHTLLTMEVFGV 61
Query: 62 IATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIG-RPTDNGQI 120
+ +L FR G +D++ + ++ + +L++ S + + + + G R GQ
Sbjct: 62 VRSLMAFRLTGGTKDYVVVGSDSGRIVILEYHP-SKNMFEKIHQETFGKSGCRRIVPGQF 120
Query: 121 GIIDPDCR--LIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL---YGCAKP 175
+DP R +IG L ++ D +L + + + L + G P
Sbjct: 121 LAVDPKGRAVMIGATEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP 180
Query: 176 TIVVLYQDNKDARHVKTYEVALKDKD---FVEGPWSQNN--------LDNGADLLIPVP- 223
L D ++A + T E A + F E N+ L+ + LI VP
Sbjct: 181 MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG 240
Query: 224 ----PPLCGVLIIGEETIVYCSANAFKAIPIRPSITKAYGRVDADGSR------------ 267
P GVLI E I Y N IR I + +D D R
Sbjct: 241 GSDGP--SGVLICSENYITY--KNFGDQPDIRCPIPRRRNDLD-DPERGMIFVCSATHKT 295
Query: 268 -----YLLGDHAGLLHLLVITHEKEKVTGLKIELLGETSIASTISYLDNAVVYIGSSYGD 322
+L G + + + ++E VT ++++ +A+ + L +++ S +G+
Sbjct: 296 KSMFFFLAQTEQGDIFKVTLETDEEMVTEIRMKYFDTIPVATAMCVLKTGFLFVSSEFGN 355
Query: 323 SQLIKLN------------------------LQPDAKGSYVEVLERYVNLGPIVDFCVVD 358
L ++ QP + V V E+ +L PI+ + D
Sbjct: 356 HYLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQE-SLSPIMSCQIAD 414
Query: 359 LERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQG-IKGMWSLRSSTDDPFDTFL 417
L + Q+ G +LR++R+G+ ++E A EL G +W++R +D FD ++
Sbjct: 415 LANEDTPQLYVACGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYI 474
Query: 418 VVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSR 477
+VSF++ T +L++ + +EE GF T TL C + LVQV +R + + R
Sbjct: 475 IVSFVNATLVLSIG--ETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKR 532
Query: 478 ELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIG-DGILTE-VKHAQLEYEISCL 535
NEWK+P ++ N QV++A GG LVY E+ G L E + ++ ++ C+
Sbjct: 533 --VNEWKTPGKKTIIRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCM 590
Query: 536 DINPIGENPSYSQIAAVGMWTDISVRIFSLPD---LNLITKEHLGGEIIPRSVLLCAFEG 592
+ + S+ AVG+ D +VRI SL L ++ + L + P S+ + G
Sbjct: 591 SLANVPPGEQRSRFLAVGL-VDNTVRIISLDPSDCLQPLSMQALPAQ--PESLCIVEMGG 647
Query: 593 IS--------------YLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSK 638
+ YL L +G LL +L+ TG+L+D + LG++P+ L +
Sbjct: 648 VEKQDELGEKGTIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQ 707
Query: 639 NTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTI 698
V A S R + YS + + ++ + + + F S P+ + L I +
Sbjct: 708 GQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILAL 767
Query: 699 DDIQKLHIR-SIPLGEHPRR-ICHQE-----------QSRTFAICSLKNQSCAEE----- 740
+ + + + + PL PR+ + H E + T A + + Q AEE
Sbjct: 768 EKLGAVFNQVAFPLQYTPRKFVIHPETNNLILIETDHNAYTEATKAQRKQQMAEEMVEAA 827
Query: 741 --------SEM-------------------------HFVRLLDDQTFEFISTYPLDTFEY 767
+EM VRL++ + L+ E
Sbjct: 828 GEDERELAAEMAAAFLNENLPEAIFGAPKAGSGQWASLVRLINPIQGNTLDLVQLEQNEA 887
Query: 768 GCSILSCSFSDDSNVYYC-VGTAY-VLPEENEPTKGRILVFIVEDG--KLQLIAEKETKG 823
S+ C F + + +Y VG A ++ G I + + G KL+ + + +
Sbjct: 888 AFSVAICRFLNGGDDWYVLVGVARDMILNPRSVGGGYIYTYRIVGGGDKLEFLHKTPVED 947
Query: 824 AVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSEC-GHHGHILALYVQTRGDFIVV 882
++ F G++L + + +++Y D G ++L +C H L + T G ++V
Sbjct: 948 VPLAIAPFQGRVLVGVGKLLRIY-----DLGKKKLLRKCENKHVPNLVTGIHTIGQRVIV 1002
Query: 883 GDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVR--KNS 940
D+ +S+ + Y+ E + A D W++ +LD D A+ N+ VR N+
Sbjct: 1003 SDVQESLFWVRYRRNENQLIIFADDTYPRWITTACLLDYDTMASADKFGNICVVRLPPNT 1062
Query: 941 EGATDE---------ERGRL-------EVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIP 984
DE +RG L E++ YH+GE V + +L+ G
Sbjct: 1063 SDDVDEDPTGNKALWDRGLLNGASQKAEIIINYHIGETVLSLQKTTLI-------PGGSE 1115
Query: 985 TVIFGTVNGVIGVIASL-PHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDA 1043
++++ T++G IG++ HE + F + L+ ++R + G +H +RS+
Sbjct: 1116 SLVYTTLSGGIGILVPFTSHEDHDFFQHLEMHMRSEFPPLCGRDHLSFRSY-----YFPV 1170
Query: 1044 KNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL 1084
KN +DGDL E F + + +S+ ++ + E+ K++E++
Sbjct: 1171 KNVIDGDLCEQFNSMDPHKQKSVSEELDRTPPEVSKKLEDI 1211
>sp|Q5B1X8|RSE1_EMENI Pre-mRNA-splicing factor rse1 OS=Emericella nidulans (strain FGSC A4
/ ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rse1 PE=3
SV=2
Length = 1209
Score = 230 bits (587), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 296/1222 (24%), Positives = 506/1222 (41%), Gaps = 165/1222 (13%)
Query: 3 IWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTP-QG-LQPMLDVPIYG 60
++ Y +T PT +T + +G F +E ++ A +++ IH P QG + P+ ++G
Sbjct: 7 MFMYSLTIQPPTAITQAILGQFAGTKEQQIVTASGSKLTIHRPDPTQGKVIPLYTQDVFG 66
Query: 61 RIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIG-RPTDNGQ 119
I TL FR G +D++ I ++ + ++++ S R + + G R GQ
Sbjct: 67 IIRTLAAFRLAGSNKDYIIIGSDSGRITIIEY-VPSQNRFNRIHLETFGKSGVRRVVPGQ 125
Query: 120 IGIIDPDCR--LIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLD---IKFLYGCAK 174
+DP R LI + L V+ +++ +L + + + Q L + G
Sbjct: 126 YLAVDPKGRACLIASVEKNKLVYVLNRNSQAELTISSPLEAHKPQTLVYSVVALDAGYEN 185
Query: 175 PTIVVLYQDNKDARHVKT-------------YEVALKDKDFVEGPWSQNNLDNGADLLIP 221
P L D ++ T YE+ L V W+ + +D + +L
Sbjct: 186 PVFAALEVDYSESDQDPTGRAYEEVEKLLVYYELDLGLNHVVR-KWT-DPVDRTSSMLFQ 243
Query: 222 VPPPL---CGVLIIGEETIVYCSAN--AFKA-IPIRPS----------ITKAYGRVDADG 265
VP GVL+ E+ I Y +N AF+ IP R IT
Sbjct: 244 VPGGADGPSGVLVCAEDNITYRHSNQDAFRVPIPRRKGAMENPERKRCITAGVMHKMRGA 303
Query: 266 SRYLLGDHAG-LLHLLVITHEKEK------VTGLKIELLGETSIASTISYLDNAVVYIGS 318
+LL G L L + E +K V GLKI+ +AS++ L + +Y+ +
Sbjct: 304 FFFLLQTEDGDLFKLTLDMVEDDKGQLTGEVKGLKIKYFDTVPLASSLLILKSGFLYVAA 363
Query: 319 SYGDSQLIKL-----------------NLQPDAKGSYV----------EVLERYVNLGPI 351
G+ + + P A + V ++E +L P+
Sbjct: 364 EGGNHHFYQFEKLGDDDEETEFNSDDFSADPAAPCTPVYFQPRGAENLNLVEAINSLNPL 423
Query: 352 VDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI-KGMWSLRSSTD 410
VD VV++ Q+ T SG + R +++G+ ++E EL + +W+ + +
Sbjct: 424 VDSKVVNISEDDAPQIFTVSGTGARSTFRTLKHGLEVSEIVESELPSVPSAVWTTKLTRA 483
Query: 411 DPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVR 470
D FD ++V+SF + T +L++ + +EE GF S TL + L+Q+ +R
Sbjct: 484 DEFDAYIVLSFANGTLVLSIG--ETVEEVTDTGFLSSAPTLAVQQLGEDSLIQIHPRGIR 541
Query: 471 LVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEI-GDGILTEV-KHAQL 528
+ + R NEW +P S+ A N QV +A G +VY E+ DG L E + Q+
Sbjct: 542 HILADRR--VNEWPAPQHRSIVAAATNERQVAVALSSGEIVYFELDADGSLAEYDERRQM 599
Query: 529 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL-PDLNLITKEHLGGEIIPRSVLL 587
++CL + + E S AVG D +VRI SL PD L K P ++ +
Sbjct: 600 SGTVTCLSLGEVPEGRVRSSFLAVGC-DDSTVRILSLDPDTTLENKSVQALTAAPSALNI 658
Query: 588 CAFEGIS------YLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTT 641
A S YL L G L L+ TGEL+D + LG++ + L S T
Sbjct: 659 IAMADSSSGGTTLYLHIGLHSGVYLRTALDEVTGELSDTRTRFLGSKAVKLFQVSVTGQT 718
Query: 642 HVFAASDRPTVIYS--SNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTID 699
V A S RP + YS K + + ++ + F+S + + + L I +I+
Sbjct: 719 AVLALSSRPWLGYSDTQTKGFMLTPLDYVGLEWGWNFSSEQCVEGMVGIQGQNLRIFSIE 778
Query: 700 DI-QKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIS 758
+ + +SIPL PR + F + N + + RLL+D
Sbjct: 779 KLDNNMLQQSIPLAYTPRHFIKHPEEPLFYVIEADNNVLSPATR---ARLLEDSKARGGD 835
Query: 759 T---------YP--------------------------LDTFEYGCSILSCSF-SDDSNV 782
T YP L+ E SI + F S D
Sbjct: 836 TTVLPPEDFGYPRGTGHWASCIQIIDPLDAKAVVGAVELEENEAAVSIAAVPFTSQDDET 895
Query: 783 YYCVGTAYVLPEENEPTK--GRILVF-IVEDGK-LQLIAEKETKGAVYSLNAFNGKLLAA 838
+ VGTA + N P+ G I ++ EDGK L+ I + + + +L F G+LLA
Sbjct: 896 FLVVGTAKDM-TVNPPSSAGGYIHIYRFQEDGKELEFIHKTKVEEPPLALLGFQGRLLAG 954
Query: 839 INQKIQLYKWMLRDDGTRELQSECGHHGHILALY-VQTRGDFIVVGDLMKSISLLIYKHE 897
+ +++Y D G ++L +C A+ +QT+G IVV D+ +S++ ++YK++
Sbjct: 955 VGSVLRIY-----DLGMKQLLRKCQAAVAPKAIVGLQTQGSRIVVSDVRESVTYVVYKYQ 1009
Query: 898 EGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVR---KNSEGATDEERGRLEVV 954
+ + D A W +A ++D + G + NL+ VR K SE A +E G +
Sbjct: 1010 DNVLIPFVDDSIARWTTAATMVDYETTAGGDKFGNLWLVRCPKKASEEADEEGSGAHLIH 1069
Query: 955 GEYHLGEFVNRFRHGSLVMRLPDSDV-----------GQIPTVIFGTVNGVIGVIAS-LP 1002
+L NR L++ + D+ G +++ G IG++ +
Sbjct: 1070 DRGYLQGTPNRLE---LMIHVFTQDIPTSLHKTQLVAGGRDILVWTGFQGTIGILVPFVS 1126
Query: 1003 HEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTR 1062
E F + L+ L + G +H +RS+ K V +DGDL E + LS
Sbjct: 1127 REDVDFFQSLEMQLASQCPPLAGRDHLIYRSYYAPVKGV-----IDGDLCEQYFLLSNDT 1181
Query: 1063 MDEISKTMNVSVEELCKRVEEL 1084
I+ ++ SV E+ +++ ++
Sbjct: 1182 KMMIAAELDRSVREIERKISDM 1203
>sp|Q7RYR4|RSE1_NEUCR Pre-mRNA-splicing factor rse-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rse-1 PE=3 SV=2
Length = 1209
Score = 228 bits (580), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 294/1222 (24%), Positives = 517/1222 (42%), Gaps = 163/1222 (13%)
Query: 2 SIWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTP-QG-LQPMLDVPIY 59
+++ Y +T PT VT + +G F+ +E ++ A +R+ + P QG + +L I+
Sbjct: 6 NMFLYSLTIQPPTAVTQALLGQFSGTKEQQILTASGSRLTLLQPDPRQGKVNTLLSHDIF 65
Query: 60 GRIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIGRPTDNGQ 119
G + + FR G +D++ +AT+ + ++++ ++++ + R GQ
Sbjct: 66 GIVRAIASFRLAGSHKDYIILATDSGRITIIEYLPKTNKFQRIHLETFGKSGVRRVIPGQ 125
Query: 120 IGIIDPDCR--LIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL---YGCAK 174
DP R LI + L V+ +++ +L + + + VL + + G A
Sbjct: 126 YLAADPKGRACLISALEKNKLVYVLNRNSQAELTISSPLEAHKPGVLVLSLVALDVGYAN 185
Query: 175 PTIVVLYQDNKDARHVKT-------------YEVALKDKDFVEGPWSQNNLDNGADLLIP 221
P L D DA T YE+ L V WS + +D + LL
Sbjct: 186 PVFAALELDYTDADQDPTGQAREEVETQLVYYELDLGLNHVVRK-WS-DTVDRTSSLLFQ 243
Query: 222 VP-----PPLCGVLIIGEETIVYCSAN--AFKA-IPIRPSITK--AYGRVDADGSRYLLG 271
VP P GVL+ GEE + Y +N AF+ IP R T+ RV G + L
Sbjct: 244 VPGGNDGP--SGVLVCGEENVTYRHSNQEAFRVPIPRRSGATEDPQRKRVIVSGVMHKLK 301
Query: 272 DHAGLLHLLVITHEKE------------------KVTGLKIELLGETSIASTISYLDNAV 313
AG L+ T + + +V LKI+ +A+++ L +
Sbjct: 302 GSAGAFFFLLQTDDGDLFKVTIDMIEDSDGNPTGEVKRLKIKYFDTIPVATSLCILKSGF 361
Query: 314 VYIGSSYGDSQLIKL---------------NLQPDAKGSYVEV------LERYV------ 346
++ S +G+ + + D SY V LE V
Sbjct: 362 LFAASEFGNHHFYQFEKLGDDDEELEFSSDDFPTDPTASYNPVYFHPRPLENLVLVESID 421
Query: 347 NLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI-KGMWSL 405
++ P VD V +L + Q+ + G + R++++G+ ++E + EL G +W+
Sbjct: 422 SMNPQVDCKVANLTGEDAPQIYSVCGNGARSTFRMLKHGLEVSEIVASELPGTPSAVWTT 481
Query: 406 RSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVT 465
+ + D +D ++V+SF + T +L++ + +EE GF + TL + L+QV
Sbjct: 482 KLTKYDQYDAYIVLSFTNGTLVLSIG--ETVEEVSDSGFLTTAPTLAVQQMGEDGLIQVH 539
Query: 466 SGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEI-GDGILTEV- 523
+R + NEW +P S+ ATAN +QV++A G +VY E+ DG L E
Sbjct: 540 PKGIRHIVQGRV---NEWPAPQHRSIVAATANENQVVIALSSGEIVYFEMDSDGSLAEYD 596
Query: 524 KHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL-PDLNLITKEHLGGEIIP 582
+ ++ ++ L + + E S AVG D +VRI SL PD L K P
Sbjct: 597 EKKEMSGTVTSLSVGQVPEGLKRSSFLAVGC-DDCTVRILSLDPDSTLEMKSIQALTAAP 655
Query: 583 RSVLLCAFE-----GISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSS 637
++ + + E YL L G L +L+ TGELTD ++ LG +P L S
Sbjct: 656 SALSIMSMEDSFGGSTLYLHIGLHSGVYLRTVLDEVTGELTDTRQKFLGPKPTRLFQVSV 715
Query: 638 KNTTHVFAASDRPTVIYSS--NKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTI 695
++ V A S RP + Y+ K + + ++ E+ + F+S + + L I
Sbjct: 716 QDQPCVLALSSRPWLGYTDPLTKGFMMTPLSYTELEYGWNFSSEQCLEGMVGIHANYLRI 775
Query: 696 GTIDDIQKLHI-RSIPLGEHPRRIC-HQEQSRTFAICSLKN-------QSCAEESEMHFV 746
+I+ + I +SIPL P+ + H EQ + I S N E+
Sbjct: 776 FSIEKLGDNMIQKSIPLTYTPKHLVKHPEQPYFYTIESDNNTLPPELRAKLLEQQSNGDA 835
Query: 747 RLLDDQTFEF----------------ISTYP-------LDTFEYGCSILSCSF-SDDSNV 782
+L + F + IS P LD E S F S +
Sbjct: 836 TVLPPEDFGYPRAKGRWASCISIIDPISEEPRVLQRIDLDNNEAAVSAAIVPFASQEGES 895
Query: 783 YYCVGTAY-VLPEENEPTKGRILVF-IVEDGK-LQLIAEKETKGAVYSLNAFNGKLLAAI 839
+ VGT ++ + + T+G I V+ EDG+ L+ I + + +L F G+LLA +
Sbjct: 896 FLVVGTGKDMVLDPRQFTEGYIHVYRFHEDGRDLEFIHKTRVEEPPLALIPFQGRLLAGV 955
Query: 840 NQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEG 899
+ +++Y L+ R+ Q++ L + +Q++G+ I+VGDL + I+ ++YK E
Sbjct: 956 GKTLRIYDLGLK-QLLRKAQADV---TPTLIVSLQSQGNRIIVGDLQQGITYVVYKAEGN 1011
Query: 900 AIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHL 959
+ A D W + ++D + G + N++ VR + + + E E HL
Sbjct: 1012 RLIPFADDTLNRWTTCTTMVDYESVAGGDKFGNIYIVRCPERVSQETD----EPGSEIHL 1067
Query: 960 GEFVNRFRHGS----------LVMRLPDS------DVGQIPTVIFGTVNGVIGV-IASLP 1002
N + HG+ LP S VG +++ + G +GV I +
Sbjct: 1068 MHARN-YLHGTPNRLSLQVHFYTQDLPTSICKTSLVVGGQDVLLWSGLQGTVGVFIPFVS 1126
Query: 1003 HEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTR 1062
E F + L+ ++R + G +H +R + K V +DGDL E F L +
Sbjct: 1127 REDVDFFQNLENHMRAEDPPLAGRDHLIYRGYYTPVKGV-----IDGDLCERFSLLPNDK 1181
Query: 1063 MDEISKTMNVSVEELCKRVEEL 1084
I+ ++ SV E+ +++ ++
Sbjct: 1182 KQMIAGELDRSVREIERKISDI 1203
>sp|Q52E49|RSE1_MAGO7 Pre-mRNA-splicing factor RSE1 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=RSE1 PE=3 SV=2
Length = 1216
Score = 226 bits (577), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 299/1221 (24%), Positives = 516/1221 (42%), Gaps = 162/1221 (13%)
Query: 6 YVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTP-QG-LQPMLDVPIYGRIA 63
Y ++ P+ +T + +G F+ +E ++ A +R+ ++ P QG + P++ ++G I
Sbjct: 10 YSLSIQPPSTITRAILGQFSGTKEQQIVAASGSRLTLYRPDPTQGKVVPLMSHDVFGIIR 69
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIG-RPTDNGQIGI 122
L FR G ++D+L IA++ + ++++ + +R + + G R GQ
Sbjct: 70 DLASFRLAGSSKDYLIIASDSGRITIVEY-LPAQNRFSRIHLETFGKSGVRRVVPGQYLA 128
Query: 123 IDPDCR--LIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL---YGCAKPTI 177
DP R LI L V+ +++ +L + + + L + + G + P
Sbjct: 129 ADPKGRACLIASVERCKLVYVLNRNSQAELTISSPLEAHKNGTLTLSLVALDVGYSNPVF 188
Query: 178 VVLY-------QDNKD--ARHVKT----YEVALKDKDFVEGPWSQNNLDNGADLLIPVP- 223
L QD K A++V+T YE+ L V W + +D+ A +L VP
Sbjct: 189 AALEVDYSEVDQDPKGDAAQNVETVLNYYELDLGLNHVVR-KWF-DVVDSTASMLFQVPG 246
Query: 224 ----PPLCGVLIIGEETIVYCSAN--AFKA-IPIRPSITK--AYGRVDADGSRYLLGDHA 274
P GVL+ GEE I Y +N AF+ IP R T+ + R G + L A
Sbjct: 247 GSDGP--SGVLVCGEENITYRHSNQDAFRVPIPRRKGATEDPSRKRNIVSGVMHKLKGSA 304
Query: 275 GLLHLLVITHEKE------------------KVTGLKIELLGETSIASTISYLDNAVVYI 316
G L+ T + + +V LKI+ +++ + L + +++
Sbjct: 305 GAFFFLLQTEDGDLFKVTIDMVEDAEGNPTGEVRRLKIKYFDTIPVSNNLCILKSGFLFV 364
Query: 317 GSSYGDS---QLIKL------------NLQPDAKGSY------------VEVLERYVNLG 349
S +G+ Q KL + D K Y + ++E ++
Sbjct: 365 ASEFGNHLFYQFEKLGDDDEELEFFSSDFPVDPKEPYEPVYFYPRPTENLALVESIDSMN 424
Query: 350 PIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI-KGMWSLRSS 408
P++D V +L + Q+ T SG + R++++G+ +NE + +L G +W+ +
Sbjct: 425 PLMDLKVANLTEEDAPQIYTVSGKGARSTFRMLKHGLEVNEIVASQLPGTPSAVWTTKLR 484
Query: 409 TDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGS 468
DD +D ++V+SF + T +L++ + +EE GF S TL + LVQV
Sbjct: 485 RDDEYDAYIVLSFTNGTLVLSIG--ETVEEVSDTGFLSSVPTLAVQQLGDDGLVQVHPKG 542
Query: 469 VRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIG-DGILTEVKHAQ 527
+R + + + NEW SP S+ A N QV +A G +VY E+ DG L E +
Sbjct: 543 IRHIRNG---VVNEWSSPQHRSIVAAATNERQVAVALSSGEIVYFEMDTDGSLAEYDEKK 599
Query: 528 LEY-EISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL-PDLNLITKEHLGGEIIPRSV 585
+ ++ L + + E S AVG D +VRI SL P+ L +K P ++
Sbjct: 600 EMFGTVTSLSLGEVPEGRLRSSYLAVGC-DDCTVRILSLDPESTLESKSVQALTAAPSAL 658
Query: 586 LLCAFEGIS------YLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKN 639
+ + E S YL L G L +L+ TGELTD ++ LG + + L S +
Sbjct: 659 SIMSMEDSSSGGTTLYLHIGLNSGVYLRTVLDEVTGELTDTRQKFLGPKAVRLFQVSVQK 718
Query: 640 TTHVFAASDRPTVIYSS--NKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGT 697
T V A S R + +S K + +N +E+ F S + + L I
Sbjct: 719 RTCVLALSSRSWLGFSDPVTKGFTMTPLNYEELEWGWNFVSEQCEEGMVGVNGQFLRIFA 778
Query: 698 IDDIQKLHI-RSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFV---------- 746
I+ + I +SIPL PR++ R F N + A E +
Sbjct: 779 IEKLGDNVIQKSIPLTYTPRKLAKHPTQRIFYTIEADNNTLAPELREQLMAAPTAVNGDA 838
Query: 747 RLLDDQTFEF---------------------------ISTYPLDTFEYGCSILSCSF-SD 778
R+L F + + LD E S+ SF S
Sbjct: 839 RVLPPDEFGYPRGNGRWASCISVVDPLGDGEELEPGVVQRIDLDNNEAALSMAVVSFASQ 898
Query: 779 DSNVYYCVGTAY-VLPEENEPTKGRILVF-IVEDGK-LQLIAEKETKGAVYSLNAFNGKL 835
D + VGT ++ T+G I V+ EDG+ L+ I + + + +L F G+L
Sbjct: 899 DGESFLVVGTGKDMVVNPRRFTEGYIHVYRFSEDGRELEFIHKTKVEEPPTALLPFQGRL 958
Query: 836 LAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYK 895
+A I + +++Y LR R+ Q+E L + + T+G I+VGD+ + + YK
Sbjct: 959 VAGIGRMLRIYDLGLR-QLLRKAQAEVAPQ---LIVSLNTQGSRIIVGDVQHGLIYVAYK 1014
Query: 896 HEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVR--KNSEGATDEERGRLEV 953
E + A D A W + ++D D GA+ NL+ +R + + +DE + +
Sbjct: 1015 SETNRLIPFADDTIARWTTCTTMVDYDSTAGADKFGNLWILRCPEKASQESDEPGSEVHL 1074
Query: 954 V-GEYHLGEFVNRFRHGSLV--MRLPDS------DVGQIPTVIFGTVNGVIGV-IASLPH 1003
V +L NR + V +P S VG +++G G IGV I +
Sbjct: 1075 VHSRDYLHGTSNRLALMAHVYTQDIPTSICKTNLVVGGQEVLLWGGFQGTIGVLIPFVSR 1134
Query: 1004 EQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRM 1063
E F + L+ +LR + G +H +R V K +DGDL E + L +
Sbjct: 1135 EDADFFQSLEQHLRSEDPPLAGRDHLMYRGC-----YVPVKGVIDGDLCERYTMLPNDKK 1189
Query: 1064 DEISKTMNVSVEELCKRVEEL 1084
I+ ++ SV E+ +++ ++
Sbjct: 1190 QMIAGELDRSVREIERKISDI 1210
>sp|Q15393|SF3B3_HUMAN Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4
Length = 1217
Score = 225 bits (574), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 280/1242 (22%), Positives = 520/1242 (41%), Gaps = 197/1242 (15%)
Query: 6 YVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQ--GLQPMLDVPIYGRIA 63
Y +T + T ++ + GNF+ ++ +++++ +E+ P + +L V ++G I
Sbjct: 4 YNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFGVIR 63
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIG-RPTDNGQIGI 122
+L FR G +D++ + ++ + +L++ S + + + + G R GQ
Sbjct: 64 SLMAFRLTGGTKDYIVVGSDSGRIVILEYQP-SKNMFEKIHQETFGKSGCRRIVPGQFLA 122
Query: 123 IDPDCRLIGLHLYDG--LFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL---YGCAKPTI 177
+DP R + + + L ++ D +L + + + L + G P
Sbjct: 123 VDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENPMF 182
Query: 178 VVLYQDNKDARHVKTYEVALKDKD---FVEGPWSQNN--------LDNGADLLIPVP--- 223
L D ++A + T E A + F E N+ L+ + LI VP
Sbjct: 183 ACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPGGS 242
Query: 224 --PPLCGVLIIGEETIVYCSANAFKAIPIRPSITKAYGRVDADGSR-------------- 267
P GVLI E I Y N IR I + +D D R
Sbjct: 243 DGP--SGVLICSENYITY--KNFGDQPDIRCPIPRRRNDLD-DPERGMIFVCSATHKTKS 297
Query: 268 ---YLLGDHAGLLHLLVITHEKEKVTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQ 324
+L G + + + +++ VT ++++ +A+ + L +++ S +G+
Sbjct: 298 MFFFLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHY 357
Query: 325 LIKLN------------------------LQPDAKGSYVEVLERYVNLGPIVDFC-VVDL 359
L ++ QP + V +++ +L PI+ FC + DL
Sbjct: 358 LYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLV-LVDELDSLSPIL-FCQIADL 415
Query: 360 ERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQG-IKGMWSLRSSTDDPFDTFLV 418
+ Q+ G SLR++R+G+ ++E A EL G +W++R +D FD +++
Sbjct: 416 ANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYII 475
Query: 419 VSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRE 478
VSF++ T +L++ + +EE GF T TL C + LVQV +R + + R
Sbjct: 476 VSFVNATLVLSIG--ETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKR- 532
Query: 479 LRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIG-DGILTE-VKHAQLEYEISCLD 536
NEWK+P ++ N QV++A GG LVY E+ G L E + ++ ++ C+
Sbjct: 533 -VNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMS 591
Query: 537 INPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIP-RSVLLCAFE---- 591
+ + S+ AVG+ D +VRI SL + + + L + +P + LC E
Sbjct: 592 LANVPPGEQRSRFLAVGL-VDNTVRIISLDPSDCL--QPLSMQALPAQPESLCIVEMGGT 648
Query: 592 ------------GISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKN 639
G YL L +G LL +L+ TG+L+D + LG++P+ L +
Sbjct: 649 EKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQG 708
Query: 640 TTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTID 699
V A S R + YS + + ++ + + F S P+ + L I ++
Sbjct: 709 QEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALE 768
Query: 700 DIQKLHIR-SIPLGEHPRR-ICHQEQSR-----------TFAICSLKNQSCAEE------ 740
+ + + + PL PR+ + H E + T A + + Q AEE
Sbjct: 769 KLGAVFNQVAFPLQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAG 828
Query: 741 -------SEM-------------------------HFVRLLDDQTFEFISTYPLDTFEYG 768
+EM +R+++ + L+ E
Sbjct: 829 EDERELAAEMAAAFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAA 888
Query: 769 CSILSCSFSDDSNVYYC-VGTAYVLPEENEPTKGRILVF--IVEDG-KLQLIAEKETKGA 824
S+ C FS+ +Y VG A L G + +V +G KL+ + + +
Sbjct: 889 FSVAVCRFSNTGEDWYVLVGVAKDLILNPRSVAGGFVYTYKLVNNGEKLEFLHKTPVEEV 948
Query: 825 VYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALY---VQTRGDFIV 881
++ F G++L + + +++Y D G ++L +C + HI A Y +QT G ++
Sbjct: 949 PAAIAPFQGRVLIGVGKLLRVY-----DLGKKKLLRKC-ENKHI-ANYISGIQTIGHRVI 1001
Query: 882 VGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVR--KN 939
V D+ +S + YK E + A D W++ +LD D GA+ N+ VR N
Sbjct: 1002 VSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPN 1061
Query: 940 SEGATDE---------ERGRL-------EVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQI 983
+ DE +RG L EV+ YH+GE V + +L+ G
Sbjct: 1062 TNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLI-------PGGS 1114
Query: 984 PTVIFGTVNGVIGVIASL-PHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVD 1042
++++ T++G IG++ HE + F + ++ +LR + G +H +RS+
Sbjct: 1115 ESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFRSY-----YFP 1169
Query: 1043 AKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL 1084
KN +DGDL E F + + +S+ ++ + E+ K++E++
Sbjct: 1170 VKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDI 1211
>sp|A0JN52|SF3B3_BOVIN Splicing factor 3B subunit 3 OS=Bos taurus GN=SF3B3 PE=2 SV=1
Length = 1217
Score = 225 bits (574), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 280/1242 (22%), Positives = 520/1242 (41%), Gaps = 197/1242 (15%)
Query: 6 YVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQ--GLQPMLDVPIYGRIA 63
Y +T + T ++ + GNF+ ++ +++++ +E+ P + +L V ++G I
Sbjct: 4 YNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFGVIR 63
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIG-RPTDNGQIGI 122
+L FR G +D++ + ++ + +L++ S + + + + G R GQ
Sbjct: 64 SLMAFRLTGGTKDYIVVGSDSGRIVILEYQP-SKNMFEKIHQETFGKSGCRRIVPGQFLA 122
Query: 123 IDPDCRLIGLHLYDG--LFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL---YGCAKPTI 177
+DP R + + + L ++ D +L + + + L + G P
Sbjct: 123 VDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENPMF 182
Query: 178 VVLYQDNKDARHVKTYEVALKDKD---FVEGPWSQNN--------LDNGADLLIPVP--- 223
L D ++A + T E A + F E N+ L+ + LI VP
Sbjct: 183 ACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPGGS 242
Query: 224 --PPLCGVLIIGEETIVYCSANAFKAIPIRPSITKAYGRVDADGSR-------------- 267
P GVLI E I Y N IR I + +D D R
Sbjct: 243 DGP--SGVLICSENYITY--KNFGDQPDIRCPIPRRRNDLD-DPERGMIFVCSATHKTKS 297
Query: 268 ---YLLGDHAGLLHLLVITHEKEKVTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQ 324
+L G + + + +++ VT ++++ +A+ + L +++ S +G+
Sbjct: 298 MFFFLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHY 357
Query: 325 LIKLN------------------------LQPDAKGSYVEVLERYVNLGPIVDFC-VVDL 359
L ++ QP + V +++ +L PI+ FC + DL
Sbjct: 358 LYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLV-LVDELDSLSPIL-FCQIADL 415
Query: 360 ERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQG-IKGMWSLRSSTDDPFDTFLV 418
+ Q+ G SLR++R+G+ ++E A EL G +W++R +D FD +++
Sbjct: 416 ANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYII 475
Query: 419 VSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRE 478
VSF++ T +L++ + +EE GF T TL C + LVQV +R + + R
Sbjct: 476 VSFVNATLVLSIG--ETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKR- 532
Query: 479 LRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIG-DGILTE-VKHAQLEYEISCLD 536
NEWK+P ++ N QV++A GG LVY E+ G L E + ++ ++ C+
Sbjct: 533 -VNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMS 591
Query: 537 INPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIP-RSVLLCAFE---- 591
+ + S+ AVG+ D +VRI SL + + + L + +P + LC E
Sbjct: 592 LANVPPGEQRSRFLAVGL-VDNTVRIISLDPSDCL--QPLSMQALPAQPESLCIVEMGGT 648
Query: 592 ------------GISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKN 639
G YL L +G LL +L+ TG+L+D + LG++P+ L +
Sbjct: 649 EKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQG 708
Query: 640 TTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTID 699
V A S R + YS + + ++ + + F S P+ + L I ++
Sbjct: 709 QEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALE 768
Query: 700 DIQKLHIR-SIPLGEHPRR-ICHQEQSR-----------TFAICSLKNQSCAEE------ 740
+ + + + PL PR+ + H E + T A + + Q AEE
Sbjct: 769 KLGAVFNQVAFPLQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAG 828
Query: 741 -------SEM-------------------------HFVRLLDDQTFEFISTYPLDTFEYG 768
+EM +R+++ + L+ E
Sbjct: 829 EDERELAAEMAAAFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAA 888
Query: 769 CSILSCSFSDDSNVYYC-VGTAYVLPEENEPTKGRILVF--IVEDG-KLQLIAEKETKGA 824
S+ C FS+ +Y VG A L G + +V +G KL+ + + +
Sbjct: 889 FSVAVCRFSNTGEDWYVLVGVAKDLILNPRSVAGGFVYTYKLVNNGEKLEFLHKTPVEEV 948
Query: 825 VYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALY---VQTRGDFIV 881
++ F G++L + + +++Y D G ++L +C + HI A Y +QT G ++
Sbjct: 949 PAAIAPFQGRVLIGVGKLLRVY-----DLGKKKLLRKC-ENKHI-ANYISGIQTIGHRVI 1001
Query: 882 VGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVR--KN 939
V D+ +S + YK E + A D W++ +LD D GA+ N+ VR N
Sbjct: 1002 VSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPN 1061
Query: 940 SEGATDE---------ERGRL-------EVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQI 983
+ DE +RG L EV+ YH+GE V + +L+ G
Sbjct: 1062 TNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLI-------PGGS 1114
Query: 984 PTVIFGTVNGVIGVIASL-PHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVD 1042
++++ T++G IG++ HE + F + ++ +LR + G +H +RS+
Sbjct: 1115 ESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFRSY-----YFP 1169
Query: 1043 AKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL 1084
KN +DGDL E F + + +S+ ++ + E+ K++E++
Sbjct: 1170 VKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDI 1211
>sp|Q921M3|SF3B3_MOUSE Splicing factor 3B subunit 3 OS=Mus musculus GN=Sf3b3 PE=2 SV=1
Length = 1217
Score = 225 bits (574), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 280/1242 (22%), Positives = 520/1242 (41%), Gaps = 197/1242 (15%)
Query: 6 YVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQ--GLQPMLDVPIYGRIA 63
Y +T + T ++ + GNF+ ++ +++++ +E+ P + +L V ++G I
Sbjct: 4 YNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFGVIR 63
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIG-RPTDNGQIGI 122
+L FR G +D++ + ++ + +L++ S + + + + G R GQ
Sbjct: 64 SLMAFRLTGGTKDYIVVGSDSGRIVILEYQP-SKNMFEKIHQETFGKSGCRRIVPGQFLA 122
Query: 123 IDPDCRLIGLHLYDG--LFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL---YGCAKPTI 177
+DP R + + + L ++ D +L + + + L + G P
Sbjct: 123 VDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENPMF 182
Query: 178 VVLYQDNKDARHVKTYEVALKDKD---FVEGPWSQNN--------LDNGADLLIPVP--- 223
L D ++A + T E A + F E N+ L+ + LI VP
Sbjct: 183 ACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPGGS 242
Query: 224 --PPLCGVLIIGEETIVYCSANAFKAIPIRPSITKAYGRVDADGSR-------------- 267
P GVLI E I Y N IR I + +D D R
Sbjct: 243 DGP--SGVLICSENYITY--KNFGDQPDIRCPIPRRRNDLD-DPERGMIFVCSATHKTKS 297
Query: 268 ---YLLGDHAGLLHLLVITHEKEKVTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQ 324
+L G + + + +++ VT ++++ +A+ + L +++ S +G+
Sbjct: 298 MFFFLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHY 357
Query: 325 LIKLN------------------------LQPDAKGSYVEVLERYVNLGPIVDFC-VVDL 359
L ++ QP + V +++ +L PI+ FC + DL
Sbjct: 358 LYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLV-LVDELDSLSPIL-FCQIADL 415
Query: 360 ERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQG-IKGMWSLRSSTDDPFDTFLV 418
+ Q+ G SLR++R+G+ ++E A EL G +W++R +D FD +++
Sbjct: 416 ANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYII 475
Query: 419 VSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRE 478
VSF++ T +L++ + +EE GF T TL C + LVQV +R + + R
Sbjct: 476 VSFVNATLVLSIG--ETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKR- 532
Query: 479 LRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIG-DGILTE-VKHAQLEYEISCLD 536
NEWK+P ++ N QV++A GG LVY E+ G L E + ++ ++ C+
Sbjct: 533 -VNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMS 591
Query: 537 INPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIP-RSVLLCAFE---- 591
+ + S+ AVG+ D +VRI SL + + + L + +P + LC E
Sbjct: 592 LANVPPGEQRSRFLAVGL-VDNTVRIISLDPSDCL--QPLSMQALPAQPESLCIVEMGGT 648
Query: 592 ------------GISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKN 639
G YL L +G LL +L+ TG+L+D + LG++P+ L +
Sbjct: 649 EKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQG 708
Query: 640 TTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTID 699
V A S R + YS + + ++ + + F S P+ + L I ++
Sbjct: 709 QEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALE 768
Query: 700 DIQKLHIR-SIPLGEHPRR-ICHQEQSR-----------TFAICSLKNQSCAEE------ 740
+ + + + PL PR+ + H E + T A + + Q AEE
Sbjct: 769 KLGAVFNQVAFPLQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAG 828
Query: 741 -------SEM-------------------------HFVRLLDDQTFEFISTYPLDTFEYG 768
+EM +R+++ + L+ E
Sbjct: 829 EDERELAAEMAAAFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAA 888
Query: 769 CSILSCSFSDDSNVYYC-VGTAYVLPEENEPTKGRILVF--IVEDG-KLQLIAEKETKGA 824
S+ C FS+ +Y VG A L G + +V +G KL+ + + +
Sbjct: 889 FSVAVCRFSNTGEDWYVLVGVAKDLILSPRSVAGGFVYTYKLVNNGEKLEFLHKTPVEEV 948
Query: 825 VYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALY---VQTRGDFIV 881
++ F G++L + + +++Y D G ++L +C + HI A Y +QT G ++
Sbjct: 949 PAAIAPFQGRVLIGVGKLLRVY-----DLGKKKLLRKC-ENKHI-ANYISGIQTIGHRVI 1001
Query: 882 VGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVR--KN 939
V D+ +S + YK E + A D W++ +LD D GA+ N+ VR N
Sbjct: 1002 VSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPN 1061
Query: 940 SEGATDE---------ERGRL-------EVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQI 983
+ DE +RG L EV+ YH+GE V + +L+ G
Sbjct: 1062 TNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLI-------PGGS 1114
Query: 984 PTVIFGTVNGVIGVIASL-PHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVD 1042
++++ T++G IG++ HE + F + ++ +LR + G +H +RS+
Sbjct: 1115 ESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFRSY-----YFP 1169
Query: 1043 AKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL 1084
KN +DGDL E F + + +S+ ++ + E+ K++E++
Sbjct: 1170 VKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDI 1211
>sp|Q5RBI5|SF3B3_PONAB Splicing factor 3B subunit 3 OS=Pongo abelii GN=SF3B3 PE=2 SV=1
Length = 1217
Score = 224 bits (572), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 280/1242 (22%), Positives = 520/1242 (41%), Gaps = 197/1242 (15%)
Query: 6 YVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQ--GLQPMLDVPIYGRIA 63
Y +T + T ++ + GNF+ ++ +++++ +E+ P + +L V ++G I
Sbjct: 4 YNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFGVIR 63
Query: 64 TLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIG-RPTDNGQIGI 122
+L FR G +D++ + ++ + +L++ S + + + + G R GQ
Sbjct: 64 SLMAFRLTGGTKDYIVVGSDSGRIVILEYQP-SKNMFEKIHQETFGKSGCRRIVPGQFLA 122
Query: 123 IDPDCRLIGLHLYDG--LFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL---YGCAKPTI 177
+DP R + + + L ++ D +L + + + L + G P
Sbjct: 123 VDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENPMF 182
Query: 178 VVLYQDNKDARHVKTYEVALKDKD---FVEGPWSQNN--------LDNGADLLIPVP--- 223
L D ++A + T E A + F E N+ L+ + LI VP
Sbjct: 183 ACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPGGS 242
Query: 224 --PPLCGVLIIGEETIVYCSANAFKAIPIRPSITKAYGRVDADGSR-------------- 267
P GVLI E I Y N IR I + +D D R
Sbjct: 243 DGP--SGVLICSENYITY--KNFGDQPDIRCPIPRRRNDLD-DPERGMIFVCSATHKTKS 297
Query: 268 ---YLLGDHAGLLHLLVITHEKEKVTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQ 324
+L G + + + +++ VT ++++ +A+ + L +++ S +G+
Sbjct: 298 MFFFLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHY 357
Query: 325 LIKLN------------------------LQPDAKGSYVEVLERYVNLGPIVDFC-VVDL 359
L ++ QP + V +++ +L PI+ FC + DL
Sbjct: 358 LYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLV-LVDELDSLSPIL-FCQIADL 415
Query: 360 ERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQG-IKGMWSLRSSTDDPFDTFLV 418
+ Q+ G SLR++R+G+ ++E A EL G +W++R +D FD +++
Sbjct: 416 ANEDTPQLYVACGRGPRSSLRVLRHGLEVSETAVSELPGNPNAVWTVRRHIEDEFDAYII 475
Query: 419 VSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRE 478
VSF++ T +L++ + +EE GF T TL C + LVQV +R + + R
Sbjct: 476 VSFVNATLVLSIG--ETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKR- 532
Query: 479 LRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIG-DGILTE-VKHAQLEYEISCLD 536
NEWK+P ++ N QV++A GG LVY E+ G L E + ++ ++ C+
Sbjct: 533 -VNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMS 591
Query: 537 INPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIP-RSVLLCAFE---- 591
+ + S+ AVG+ D +VRI SL + + + L + +P + LC E
Sbjct: 592 LANVPPGEQRSRFLAVGL-VDNTVRIISLDPSDCL--QPLSMQALPAQPESLCIVEMGGT 648
Query: 592 ------------GISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKN 639
G YL L +G LL +L+ TG+L+D + LG++P+ L +
Sbjct: 649 EKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQG 708
Query: 640 TTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTID 699
V A S R + YS + + ++ + + F S P+ + L I ++
Sbjct: 709 QEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALE 768
Query: 700 DIQKLHIR-SIPLGEHPRR-ICHQEQSR-----------TFAICSLKNQSCAEE------ 740
+ + + + PL PR+ + H E + T A + + Q AEE
Sbjct: 769 KLGAVFNQVAFPLQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAG 828
Query: 741 -------SEM-------------------------HFVRLLDDQTFEFISTYPLDTFEYG 768
+EM +R+++ + L+ E
Sbjct: 829 EDERELAAEMAAAFLNENLPESIFGAPKAGSGQWASVIRVMNPIQGNTLDLVQLEQNEAA 888
Query: 769 CSILSCSFSDDSNVYYC-VGTAYVLPEENEPTKGRILVF--IVEDG-KLQLIAEKETKGA 824
S+ C FS+ +Y VG A L G + +V +G KL+ + + +
Sbjct: 889 FSVAVCRFSNTGEDWYVLVGVAKDLILNPRSVAGGFVYTYKLVNNGEKLEFLHKTPVEEV 948
Query: 825 VYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALY---VQTRGDFIV 881
++ F G++L + + +++Y D G ++L +C + HI A Y +QT G ++
Sbjct: 949 PAAIAPFQGRVLIGVGKLLRVY-----DLGKKKLLRKC-ENKHI-ANYISGIQTIGHRVI 1001
Query: 882 VGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVR--KN 939
V D+ +S + YK E + A D W++ +LD D GA+ N+ VR N
Sbjct: 1002 VSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPN 1061
Query: 940 SEGATDE---------ERGRL-------EVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQI 983
+ DE +RG L EV+ YH+GE V + +L+ G
Sbjct: 1062 TNDEVDEDPTGNKALRDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLI-------PGGS 1114
Query: 984 PTVIFGTVNGVIGVIASL-PHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVD 1042
++++ T++G IG++ HE + F + ++ +LR + G +H +RS+
Sbjct: 1115 ESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFRSY-----YFP 1169
Query: 1043 AKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL 1084
KN +DGDL E F + + +S+ ++ + E+ K++E++
Sbjct: 1170 VKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVTKKLEDI 1211
>sp|Q9UTT2|RSE1_SCHPO Pre-mRNA-splicing factor prp12 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=prp12 PE=1 SV=1
Length = 1206
Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 277/1229 (22%), Positives = 502/1229 (40%), Gaps = 179/1229 (14%)
Query: 2 SIWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLL--TPQGLQPMLDVPIY 59
S++ Y +T V SC + + + ++IA +R+ I+ + T + +L+ +
Sbjct: 6 SLFLYSLTIQNSNYVQSSCAASLSGKKAQEIVIATESRLLIYKVDATDGRMNCILNQNCF 65
Query: 60 GRIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIGRPTDNGQ 119
G I + R G +D+L + ++ + +L+++ E ++L+ R G+
Sbjct: 66 GIIRNVAPLRLTGFKRDYLVVTSDSGRITILEYNVEKNKLVPIYQETFGKSGIRRVVPGE 125
Query: 120 IGIIDPDCR--LIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLY-----GC 172
ID R +I + L V+ D++ L + LE + +I F G
Sbjct: 126 YLAIDAKGRAAMIASVEKNKLVYVLNRDSEANL--TISSPLEAHKANNICFHLIGLDTGY 183
Query: 173 AKPTIVVLYQDNKDARHVKTYEVALKDK------------DFVEGPWSQNNLDNGADLLI 220
A P L D + H T E + + V WS+ +D + +LI
Sbjct: 184 ANPIFAALEVDYSEIDHDSTREAFTSSEKVLSYYELDLGLNHVVKRWSKV-VDRNSYMLI 242
Query: 221 PVP-----PPLCGVLIIGEETIVYCS-ANAFKAIPI-------RPSITKAYGRVDADGSR 267
PVP P G L+I I Y AF IPI +I+ + +V+++ +
Sbjct: 243 PVPGGNDGP--SGTLVISNGWISYRHLQKAFHQIPILRRQAASANAISTPWNQVNSNSAN 300
Query: 268 ------------------YLLGDHAGLLHLLVITHEKE-KVTGLKIELLGETSIASTISY 308
YLL G L L I H+ + V L+++ +A ++
Sbjct: 301 DGPLIVSAVLHKMKGSFFYLLQTGDGDLLKLTIEHDGQGNVVELRLKYFDTVPLAVQLNI 360
Query: 309 LDNAVVYIGSSYGDSQLIKL---------------------------NLQPDAKG-SYVE 340
L +++ + +G+ QL + N+ +G +
Sbjct: 361 LKTGFLFVATEFGNHQLYQFENLGIDDDELEITSLDFQAQDNEVGTKNVHFGVRGLQNLS 420
Query: 341 VLERYVNLGPIVDFCVVDLERQGQG-QVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI 399
++E +L + D ++ G+ Q+ T G + SLR +R G+ E + EL G
Sbjct: 421 LVEEIPSLYSLTDTLLMKAPSSGEANQLYTVCGRGSNSSLRQLRRGLETTEIVASELPGA 480
Query: 400 K-GMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIY 458
+W+L+ + D +D+++++SF + T +L++ + +EE GF S TL
Sbjct: 481 PIAIWTLKLNQTDVYDSYIILSFTNGTLVLSIG--ETVEEISDSGFLSSVSTLNARQMGR 538
Query: 459 NQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGD- 517
+ LVQ+ +R + + + +EWK P V + N Q+++A G LVY E+ D
Sbjct: 539 DSLVQIHPKGIRYIRANKQT--SEWKLPQDVYVVQSAINDMQIVVALSNGELVYFEMSDD 596
Query: 518 ---GILTEVKHAQ-LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITK 573
G L E + + L ++ L + P+ E S + D +VR+ SL DL T
Sbjct: 597 VEGGQLNEYQERKTLTANVTSLALGPVQEGSRRSNFMCLAC-DDATVRVLSL-DL-YTTL 653
Query: 574 EHLGGE----------IIPRSVLLCAFEGIS--YLLCALGDGHLLNFLLNMKTGELTDRK 621
E+L + IIP +V G+S YL L +G L ++++ +G+L D +
Sbjct: 654 ENLSVQALSSPANSLCIIPMNV-----NGVSTLYLHIGLMNGVYLRTVIDVTSGQLLDTR 708
Query: 622 KVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAF 681
LG + + + + KN V A S R + YS + L S + + H F S
Sbjct: 709 TRFLGPRAVKIYPITMKNQNTVLAVSSRTFLAYSYQQNLQLSPIAYSAIDHASSFASEQC 768
Query: 682 PDSLAIAKEGELTIGTIDDIQ-KLHIRSIPLGEHPRRICHQ---------EQSRTF---- 727
P+ + ++ L I T+D +Q L PL PR+I + R F
Sbjct: 769 PEGIVAIQKNTLKIFTVDSLQDDLKSDIYPLICTPRKIVKHPNFPVLYILQSERNFDSFK 828
Query: 728 ----------AICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFS 777
+ K +S + F+ + D + + I PL E S+ + F
Sbjct: 829 YAQENGDVGSSYTKEKQNEHTSKSWVSFISVFDMISKKIIHESPLGDNEAAFSMTAAFFK 888
Query: 778 DDSNVYYCVGTAYVLPEENEPTKG---RILVFIVEDGKLQLIAEKETKGAVYSLNAFNGK 834
+ + G+A + E R+ F E KL+LI+ E G +L F G+
Sbjct: 889 NRDEFFLVAGSATNMDLECRTCSHGNFRVYRFHDEGKKLELISHTEIDGIPMALTPFQGR 948
Query: 835 LLAAINQKIQLY----KWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSIS 890
+LA + + +++Y K MLR EL + + ++ + IVV D S+
Sbjct: 949 MLAGVGRFLRIYDLGNKKMLRKG---ELSAV-----PLFITHITVQASRIVVADSQYSVR 1000
Query: 891 LLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVR--KNSEGATDEER 948
++YK E+ + A D W + ++D D G + N++ +R ++ DEE
Sbjct: 1001 FVVYKPEDNHLLTFADDTIHRWTTTNVLVDYDTLAGGDKFGNIWLLRCPEHVSKLADEEN 1060
Query: 949 GRLEVVGEYHLGEFVNRFRHG-SLVMRLPDSDV-----------GQIPTVIFGTVNGVIG 996
+++ H F+N H L+ +D+ G +++ + G +G
Sbjct: 1061 SESKLI---HEKPFLNSTPHKLDLMAHFFTNDIPTSLQKVQLVEGAREVLLWTGLLGTVG 1117
Query: 997 VIAS-LPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESF 1055
V + E F ++L+ LRK + G +H +RS+ K V +DGDL E +
Sbjct: 1118 VFTPFINQEDVRFFQQLEFLLRKECPPLAGRDHLAYRSYYAPVKCV-----IDGDLCEMY 1172
Query: 1056 LDLSRTRMDEISKTMNVSVEELCKRVEEL 1084
L + I+ ++ ++ E+ K++E+
Sbjct: 1173 YSLPHPVQEMIANELDRTIAEVSKKIEDF 1201
>sp|P0CR22|RSE1_CRYNJ Pre-mRNA-splicing factor RSE1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=RSE1 PE=3 SV=1
Length = 1217
Score = 204 bits (519), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 291/1236 (23%), Positives = 503/1236 (40%), Gaps = 189/1236 (15%)
Query: 8 VTAHKPTNVTHSCVGNFTSPQELNLIIAK-CTRIEIHLL--TPQGLQPMLDVPIYGRIAT 64
+T PTNV+ + VG+F+ + ++ + T++EI L T L ++ +G I
Sbjct: 6 LTLSSPTNVSTAVVGSFSGSKSQEILCVRGGTKLEIFKLNATTGQLDTIVSTEAFGTIRN 65
Query: 65 LELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIG-RPTDNGQIGII 123
+ FR G +D++ ++ + +L++ + +V + G R GQ +
Sbjct: 66 IAGFRLAGMTKDYILATSDSGRLSILEFVISPTPHFESLYQEVFGKSGSRRIVPGQFLAV 125
Query: 124 DPDCR--LIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL---YGCAKPTIV 178
DP R L+G L V+ + +G+L + + + L + G P
Sbjct: 126 DPKGRSCLVGSLEKTKLVYVLNRNTEGKLYPSSPLEAHKNHTLVTHIVGVDQGYDNPLYA 185
Query: 179 VLYQDNKDA-------------RHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVP-- 223
L D ++ +H+ YE+ L V WS+ D A+LL+ VP
Sbjct: 186 ALETDYSESDQDSTGEAYENTQKHLTFYELDLGLNHVVRK-WSEPT-DRRANLLVQVPGG 243
Query: 224 ----------PPLCGVLIIGEETIVYCSANA-FKAIPIRPSITKAYGRVDADGSR----- 267
P GVL+ E+ I++ + IPI R D SR
Sbjct: 244 QNANSDRFEGP--SGVLVCTEDHIIWKHMDVEAHRIPIPRRRNPLVQR--GDKSRGLIIV 299
Query: 268 ------------YLLGDHAGLLHLLVITHEKEKVTGLKIELLGETSIASTISYLDNAVVY 315
+LL G L+ + I H E V LKI+ +A+++ L +Y
Sbjct: 300 SAVMHKIKGAFFFLLQSEDGDLYKVWIEHNGEDVVALKIKYFDTVPVANSLCILKRGYIY 359
Query: 316 IGSSYGDSQLIKLNLQPDAKG-------SYVE----------------------VLERYV 346
+ S + D L + + G Y E +++
Sbjct: 360 VASEFSDQNLYQFQSLAEDDGEQEWSSTDYPENGNIDGPLPFAFFDPQPLRNLLLVDTVP 419
Query: 347 NLGPIVDFCVVDL--ERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIK-GMW 403
+L PI D VV+L Q+ G + R +++G+ + E S L G+ +W
Sbjct: 420 SLDPITDAHVVNLLGASSDTPQIYAACGRGARSTFRTLKHGLDVAEMVSSPLPGVPTNVW 479
Query: 404 SLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQ 463
+L+ + DD +D+++V+SF + T +L++ + +EE GF S TL L+Q
Sbjct: 480 TLKLTEDDEYDSYIVLSFPNGTLVLSIG--ETIEEVNDTGFLSSGPTLAVQQLGNAGLLQ 537
Query: 464 VTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIG-DGILTE 522
V +R + + R +EW +PPG ++ AT N QV++A LVY E+ +G L+E
Sbjct: 538 VHPYGLRHIRAADRV--DEWPAPPGQTIVAATTNRRQVVIALSTAELVYFELDPEGSLSE 595
Query: 523 VKHAQ-LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL-PDLNLITKEHLGGEI 580
+ + L +C+ I + E + AVG + +V I SL PD L T
Sbjct: 596 YQEKKALPGNATCVTIAEVPEGRRRTSFLAVGC-DNQTVSIISLEPDSTLDTLSLQALTA 654
Query: 581 IPRSVLLCAFEGIS--------YLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITL 632
P S+ L S +L L +G LL +++ G L+D + LG +P L
Sbjct: 655 PPTSICLAEIFDTSIDKNRATMFLNIGLMNGVLLRTVVDPVDGSLSDTRLRFLGAKPPKL 714
Query: 633 RTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGE 692
+ + V A S R ++Y+ L + + + ++A PD L
Sbjct: 715 VRANVQGQPSVMAFSSRTWLLYTYQDMLQTQPLIYDTLEYAWSLSAAMCPDGLIGISGNT 774
Query: 693 LTIGTIDDI-QKLHIRSIPLGEHPRR-ICHQEQS---------RTFAICSLKNQSCAEES 741
L I I + +KL S L PR+ I H S RT++ +++ +ES
Sbjct: 775 LRIFNIPKLGEKLKQDSTALTYTPRKFISHPFNSVFYMIEADHRTYSKSAIERIVKQKES 834
Query: 742 E--------------------------MHFVRLLDDQTFEFISTYPLDTFEYGCSILSCS 775
E VR+LD E I T LD E SI
Sbjct: 835 EGRRVDTLLLDLPANEFGRPRAPAGHWASCVRVLDPLANETIMTLDLDEDEAAFSIAIAY 894
Query: 776 FS-DDSNVYYCVGTAYVLPEENEPTK-GRILVF-IVEDGK-LQLIAEKETKGAVYSLNAF 831
F + VGT + + K G + V+ I E G+ L+ + + +T L F
Sbjct: 895 FERGGGEPFLVVGTGVKTTLQPKGCKEGYLRVYAIKEQGRILEFLHKTKTDDIPLCLAGF 954
Query: 832 NGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALY-VQTRGDFIVVGDLMKSIS 890
G LLA I + ++LY+ G + L +C ++G A+ + +G I+VGD+ +S
Sbjct: 955 QGFLLAGIGKSLRLYEM-----GKKALLRKCENNGFPTAVVTINVQGARIIVGDMQESTF 1009
Query: 891 LLIYKHEEGAIEER-----ARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKN---SEG 942
+Y+ +I R A D W++ V +D + + N+F R + SE
Sbjct: 1010 YCVYR----SIPTRQLLIFADDSQPRWITCVTSVDYETVACGDKFGNIFINRLDPSISEK 1065
Query: 943 ATDEERG------RLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTV-------IFG 989
D+ G + ++G H E + + GS+V + + +IP V ++
Sbjct: 1066 VDDDPTGATILHEKSFLMGAAHKTEMIGHYNIGSVV-----TSITKIPLVAGGRDVLVYT 1120
Query: 990 TVNGVIGVIAS-LPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLD 1048
T++G +G + + + F+ L+ ++R + G +H +R + V K +D
Sbjct: 1121 TISGAVGALVPFVSSDDIEFMSTLEMHMRTQDISLVGRDHIAYRGY-----YVPIKGVVD 1175
Query: 1049 GDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL 1084
GDL ESF L + I+ ++ SV ++ K++E++
Sbjct: 1176 GDLCESFSLLPYPKQQAIALDLDRSVGDVLKKLEQM 1211
>sp|P0CR23|RSE1_CRYNB Pre-mRNA-splicing factor RSE1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=RSE1 PE=3 SV=1
Length = 1217
Score = 204 bits (519), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 291/1236 (23%), Positives = 503/1236 (40%), Gaps = 189/1236 (15%)
Query: 8 VTAHKPTNVTHSCVGNFTSPQELNLIIAK-CTRIEIHLL--TPQGLQPMLDVPIYGRIAT 64
+T PTNV+ + VG+F+ + ++ + T++EI L T L ++ +G I
Sbjct: 6 LTLSSPTNVSTAVVGSFSGSKSQEILCVRGGTKLEIFKLNATTGQLDTIVSTEAFGTIRN 65
Query: 65 LELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIG-RPTDNGQIGII 123
+ FR G +D++ ++ + +L++ + +V + G R GQ +
Sbjct: 66 IAGFRLAGMTKDYILATSDSGRLSILEFVISPTPHFESLYQEVFGKSGSRRIVPGQFLAV 125
Query: 124 DPDCR--LIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL---YGCAKPTIV 178
DP R L+G L V+ + +G+L + + + L + G P
Sbjct: 126 DPKGRSCLVGSLEKTKLVYVLNRNTEGKLYPSSPLEAHKNHTLVTHIVGVDQGYDNPLYA 185
Query: 179 VLYQDNKDA-------------RHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVP-- 223
L D ++ +H+ YE+ L V WS+ D A+LL+ VP
Sbjct: 186 ALETDYSESDQDSTGEAYENTQKHLTFYELDLGLNHVVRK-WSEPT-DRRANLLVQVPGG 243
Query: 224 ----------PPLCGVLIIGEETIVYCSANA-FKAIPIRPSITKAYGRVDADGSR----- 267
P GVL+ E+ I++ + IPI R D SR
Sbjct: 244 QNANSDRFEGP--SGVLVCTEDHIIWKHMDVEAHRIPIPRRRNPLVQR--GDKSRGLIIV 299
Query: 268 ------------YLLGDHAGLLHLLVITHEKEKVTGLKIELLGETSIASTISYLDNAVVY 315
+LL G L+ + I H E V LKI+ +A+++ L +Y
Sbjct: 300 SAVMHKIKGAFFFLLQSEDGDLYKVWIEHNGEDVVALKIKYFDTVPVANSLCILKRGYIY 359
Query: 316 IGSSYGDSQLIKLNLQPDAKG-------SYVE----------------------VLERYV 346
+ S + D L + + G Y E +++
Sbjct: 360 VASEFSDQNLYQFQSLAEDDGEQEWSSTDYPENGNIDGPLPFAFFDPQPLRNLLLVDTVP 419
Query: 347 NLGPIVDFCVVDL--ERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIK-GMW 403
+L PI D VV+L Q+ G + R +++G+ + E S L G+ +W
Sbjct: 420 SLDPITDAHVVNLLGASSDTPQIYAACGRGARSTFRTLKHGLDVAEMVSSPLPGVPTNVW 479
Query: 404 SLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQ 463
+L+ + DD +D+++V+SF + T +L++ + +EE GF S TL L+Q
Sbjct: 480 TLKLTEDDEYDSYIVLSFPNGTLVLSIG--ETIEEVNDTGFLSSGPTLAVQQLGNAGLLQ 537
Query: 464 VTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIG-DGILTE 522
V +R + + R +EW +PPG ++ AT N QV++A LVY E+ +G L+E
Sbjct: 538 VHPYGLRHIRAADRV--DEWPAPPGQTIVAATTNRRQVVIALSTAELVYFELDPEGSLSE 595
Query: 523 VKHAQ-LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL-PDLNLITKEHLGGEI 580
+ + L +C+ I + E + AVG + +V I SL PD L T
Sbjct: 596 YQEKKALPGNATCVTIAEVPEGRRRTSFLAVGC-DNQTVSIISLEPDSTLDTLSLQALTA 654
Query: 581 IPRSVLLCAFEGIS--------YLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITL 632
P S+ L S +L L +G LL +++ G L+D + LG +P L
Sbjct: 655 PPTSICLAEIFDTSIDKNRATMFLNIGLMNGVLLRTVVDPVDGSLSDTRLRFLGAKPPKL 714
Query: 633 RTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGE 692
+ + V A S R ++Y+ L + + + ++A PD L
Sbjct: 715 VRANVQGQPSVMAFSSRTWLLYTYQDMLQTQPLIYDTLEYAWSLSAAMCPDGLIGISGNT 774
Query: 693 LTIGTIDDI-QKLHIRSIPLGEHPRR-ICHQEQS---------RTFAICSLKNQSCAEES 741
L I I + +KL S L PR+ I H S RT++ +++ +ES
Sbjct: 775 LRIFNIPKLGEKLKQDSTALTYTPRKFISHPFNSVFYMIEADHRTYSKSAIERIVKQKES 834
Query: 742 E--------------------------MHFVRLLDDQTFEFISTYPLDTFEYGCSILSCS 775
E VR+LD E I T LD E SI
Sbjct: 835 EGRRVDTLLLDLPANEFGRPRAPAGHWASCVRVLDPLANETIMTLDLDEDEAAFSIAIAY 894
Query: 776 FS-DDSNVYYCVGTAYVLPEENEPTK-GRILVF-IVEDGK-LQLIAEKETKGAVYSLNAF 831
F + VGT + + K G + V+ I E G+ L+ + + +T L F
Sbjct: 895 FERGGGEPFLVVGTGVKTTLQPKGCKEGYLRVYAIKEQGRILEFLHKTKTDDIPLCLAGF 954
Query: 832 NGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALY-VQTRGDFIVVGDLMKSIS 890
G LLA I + ++LY+ G + L +C ++G A+ + +G I+VGD+ +S
Sbjct: 955 QGFLLAGIGKSLRLYEM-----GKKALLRKCENNGFPTAVVTINVQGARIIVGDMQESTF 1009
Query: 891 LLIYKHEEGAIEER-----ARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKN---SEG 942
+Y+ +I R A D W++ V +D + + N+F R + SE
Sbjct: 1010 YCVYR----SIPTRQLLIFADDSQPRWITCVTSVDYETVACGDKFGNIFINRLDPSISEK 1065
Query: 943 ATDEERG------RLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTV-------IFG 989
D+ G + ++G H E + + GS+V + + +IP V ++
Sbjct: 1066 VDDDPTGATILHEKSFLMGAAHKTEMIGHYNIGSVV-----TSITKIPLVAGGRDVLVYT 1120
Query: 990 TVNGVIGVIAS-LPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLD 1048
T++G +G + + + F+ L+ ++R + G +H +R + V K +D
Sbjct: 1121 TISGAVGALVPFVSSDDIEFMSTLEMHMRTQDISLVGRDHIAYRGY-----YVPIKGVVD 1175
Query: 1049 GDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL 1084
GDL ESF L + I+ ++ SV ++ K++E++
Sbjct: 1176 GDLCESFSLLPYPKQQAIALDLDRSVGDVLKKLEQM 1211
>sp|Q4PGM6|RSE1_USTMA Pre-mRNA-splicing factor RSE1 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=RSE1 PE=3 SV=1
Length = 1221
Score = 187 bits (476), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 276/1238 (22%), Positives = 512/1238 (41%), Gaps = 181/1238 (14%)
Query: 1 MSIWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPI-- 58
M ++N + A N T VG F+ ++ +I+AK +R+E LL P +D +
Sbjct: 4 MYLYNLTLQASGSVNAT--VVGQFSGTRQQEIIVAKGSRLE--LLRPDTQTGKVDTVLSH 59
Query: 59 --YGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIG-RPT 115
+G I +L FR G ++D++ + ++ + +L++ +++ L + + R G R
Sbjct: 60 DAFGVIRSLAAFRLTGGSKDYVIVGSDSGRIVILEYQPKTNSL-EKVHQETFGRSGSRRI 118
Query: 116 DNGQIGIIDPDCR--LIGLHLYDGLFKVIPFDNKGQLKEAFNIR-------LEELQVLDI 166
GQ DP R +IG L ++ D + L + + + + +D+
Sbjct: 119 VPGQYLATDPKGRATMIGAMEKAMLVYILNRDAQANLTISSPLEAHRPSAIIHHIVGVDV 178
Query: 167 KF---LYGCAKPTIVVLYQDNKDARHVKTYEVALKDKDFVE---------GPWSQNNLDN 214
F L+ C + V Y D+ + +E A K + E WS+ +D
Sbjct: 179 GFENPLFACLE----VDYSDSDHDPSGRAFEEAAKTLTYYELDLGLNHVVRKWSEP-VDP 233
Query: 215 GADLLIPVPPPL----------CGVLIIGEETIVYCSANAFK-AIPIRPSITKAYGRVDA 263
++LL+ VP GVL+ E+ I Y + + +PI + +
Sbjct: 234 RSNLLVQVPGGYNQNLEKWDGPSGVLVCSEDYITYKHQDQPEHRVPIPKRLNPVEKLSER 293
Query: 264 DGSR--------------YLLGDHAGLLHLLVITHEKEKVTGLKIELLGETSIASTISYL 309
G+ +L+ G L + + H+ +++ LKI+ +AS + L
Sbjct: 294 RGTLIVASVLHKMKNAFFFLVQTEDGDLFKITMEHQDDEIRSLKIKYFDTVPVASGLVIL 353
Query: 310 DNAVVYIGSSYGDSQLIKLN------------------------------LQPDAKGSYV 339
+ +++ S YG L P + V
Sbjct: 354 RSGFLFVASEYGAQLLYSFQKLGDDDDLPEYISTDYDENGAGRRRPQLPTFTPRPLDNLV 413
Query: 340 EVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI 399
+V E +L PI+D ++ Q+ G S +++R+G+ + E S +L G+
Sbjct: 414 QVDE-MPSLDPILDAKPLNPLAADSPQIFAACGRGARSSFKMLRHGLEVQEAVSSDLPGV 472
Query: 400 -KGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIY 458
+W+ + + D +D+++++SF++ T +L++ + +EE GF + + TL
Sbjct: 473 PSAVWTTKITQQDEYDSYIILSFVNGTLVLSIG--ETIEEVSDSGFLTSSSTLAVQQLGQ 530
Query: 459 NQLVQVTSGSVRLVSSTSRELRNEWKSPP----GYSVNVAT-ANASQVLLATGGGHLVYL 513
+ L+QV +R V +++ NEW +P + VAT N QV++A LVY
Sbjct: 531 DALLQVHPHGIRHVL-VDKQI-NEWATPSLPNGRQTTIVATCTNERQVVVALSSNELVYF 588
Query: 514 EIG-DGILTEVKHAQ-LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLI 571
E+ DG L E + + + + + + E + AVG D +VRI SL + +
Sbjct: 589 ELDMDGQLNEYQERKAMGAGVLTMSMPDCPEGRQRTPYLAVGC-DDSTVRIISLEPNSTL 647
Query: 572 TKEHLGGEIIPRSVLLCAFE----------GISYLLCALGDGHLLNFLLNMKTGELTDRK 621
+ P S + C E +++ L +G LL +L+ TG+LTD +
Sbjct: 648 ASISIQALTAPASSI-CMAEMLDATIDRNHATTFVNIGLQNGVLLRTILDAVTGQLTDTR 706
Query: 622 KVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAF 681
LG++ + L V A S R + Y+ +L + + + H F++
Sbjct: 707 TRFLGSKAVRLIRTKVHGQAAVMALSTRTWLSYTYQDRLQFVPLIFDVLDHAWSFSAELC 766
Query: 682 PDSLAIAKEGELTIGTIDDI-QKLHIRSIPLGEHPRRIC-HQEQSRTFAICSLKNQSCA- 738
P+ L L I TI + KL S+ L PR+I H + F + ++++ +
Sbjct: 767 PEGLIGIVGSTLRIFTIPSLASKLKQDSVALSYTPRKIANHPNEQGLFYVVEAEHRTLSP 826
Query: 739 -----------EESEMHFVRLLDDQTFEF------------------------ISTYPLD 763
+E + H +LD EF +D
Sbjct: 827 GAQRRRTEMLGKELKPHQRGVLDLNPAEFGAIRAEAGNWASCIRAVDGVQAQTTHRLEMD 886
Query: 764 TFEYGCSILSCSF-SDDSNVYYCVGTAY-VLPEENEPTKGRILVF-IVEDGK-LQLIAEK 819
E SI F S + V VG+A V+ K + + ++++G+ L+L+ +
Sbjct: 887 DNEAAFSIAVVPFASAEKEVMLVVGSAVDVVLSPRSCKKAYLTTYRLLDNGRELELLHKT 946
Query: 820 ETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALY-VQTRGD 878
E L AF G+LLA I + +++Y D G ++L +C + A+ + +G
Sbjct: 947 EVDDIPLVLRAFQGRLLAGIGKALRIY-----DLGKKKLLRKCENRSFPTAVVSLDAQGS 1001
Query: 879 FIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVR- 937
IVVGD+ +SI YK E + A D +++ +LD D A+ N++ +R
Sbjct: 1002 RIVVGDMQESIIFASYKPLENRLVTFADDVMPKFVTRCTMLDYDTVAAADKFGNIYVLRL 1061
Query: 938 -KNSEGATDEERGRLEVV-------GEYHLGEFVNRFRHGSLVMRLPDSDV--GQIPTVI 987
N+ + DE+ + +V G H V F G ++ L + + G ++
Sbjct: 1062 DGNTSRSVDEDPTGMTIVHEKPVLMGAAHKASLVAHFFVGDIITSLHRTAMVAGGREVLL 1121
Query: 988 FGTVNGVIGVIAS-LPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNF 1046
+ ++G IG + + E L L+++LR+ + G +H +RS K+V
Sbjct: 1122 YTGLSGSIGALVPFVSKEDVDTLSTLESHLRQENNSIVGRDHLAYRSSYAPVKSV----- 1176
Query: 1047 LDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL 1084
+DGDL E+F LS + + I+ ++ E+ K++ +L
Sbjct: 1177 IDGDLCETFGLLSPAKQNAIAGELDRKPGEINKKLAQL 1214
>sp|Q10426|RIK1_SCHPO Chromatin modification-related protein rik1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rik1 PE=1 SV=2
Length = 1040
Score = 140 bits (352), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 233/1082 (21%), Positives = 438/1082 (40%), Gaps = 122/1082 (11%)
Query: 32 LIIAKCTRIEIHLLTP-QGLQPMLDVPIYGRIATLELFRPHGEAQDFLFIATERYKFCVL 90
L++ + +I I+L + GLQ +P++ + + +RP G +D+LF+ + +
Sbjct: 28 LVLLQALKINIYLCSEVHGLQFFTSIPLFSTVKHIRPYRPPGLDRDYLFVVLNDDTYFSI 87
Query: 91 QWDAESSELITRAMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVI-------- 142
WD + ++I V R+ P + D R+ + L +I
Sbjct: 88 YWDEDYQKVIVDH-PPVRYRVTFPWNRNAKSYCLVDLRMRAIFLSIDEISMICIRILSAE 146
Query: 143 -PFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLYQDNKDARHVKTYEVALKDKD 201
+ F + D+ L + PT+VVL+ D D +V + + L K
Sbjct: 147 ERLKTGRSIDSGFPFSFPVHLIYDMCILNDSSTPTLVVLHSDGLDC-YVTAFLLDLSSK- 204
Query: 202 FVEGPWSQNNLDNGADLLIPVPPPLCGV-----LIIGEETIVYCSANA-FKAIPIRPSIT 255
+L G L V P + L++ E ++C F I +
Sbjct: 205 ---------SLGKGIRLFERVKPSMIMPFGKRGLLVFESLFIHCMYRGNFVTINGPCTTY 255
Query: 256 KAYGRVDADGSRYLLGDHAGLLHLLVITHEKEKVTGLKIELLG--ETSIASTISYLDNAV 313
+ + Y++ D G L + + + L +E L ++++ + +
Sbjct: 256 MHWTPLKGQKMHYIVCDTNGYLFGVYSSILGKNKWSLVMERLPIPPFDFITSLNSIHEGL 315
Query: 314 VYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGA 373
++IGS +S+LI L+ D ++ NLGPI D V L+ + + C+G
Sbjct: 316 LFIGSKNSESKLINLSTLKD--------VDSIPNLGPIHDLLV--LKNDIEKSFLVCAGT 365
Query: 374 YKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLE 433
++ SL ++ + ++ ++ GI L S + L + F SET +A N++
Sbjct: 366 PRNASLIYFQHALKLDILGQTKISGILRAMVLPSYPEHK----LFLGFPSET--VAFNIK 419
Query: 434 DELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNV 493
++ + E++ S + + VQVTS + + S R + N
Sbjct: 420 EDFQ-LELDPSLSTKERTIALSGTNGEFVQVTSTFLCIYDSAKRSRLVYIEK----ITNA 474
Query: 494 ATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVG 553
A ++ G ++ + TEV E EISCLD + + QI VG
Sbjct: 475 ACYQEYSAIVINGTALAIFKKD-----TEVARKVFESEISCLDFS------AQFQIG-VG 522
Query: 554 MWTDISVRIFSLPDLNLIT-KEHLGGEIIPRSVLLCAFEGI----SYLLCALGDGHLLNF 608
W+ V I + D + I+ +PR+++L EG+ + LL + G G ++
Sbjct: 523 FWSK-QVMILTFSDNSSISCAFQTNVPSLPRNIIL---EGVGVDRNLLLVSSGSGEFKSY 578
Query: 609 LLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLK 668
+L ++ K GT P++ R F+ T++ +D P ++Y N L Y +++
Sbjct: 579 VLFKNNLVFSETKH--FGTTPVSFRRFTMNIGTYIICNNDCPHMVYGFNGALCYMPLSMP 636
Query: 669 EVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHP-RRICHQEQ--SR 725
+ +C F + D L G L ++ + +L R + L P + I Q + R
Sbjct: 637 QSYDVCQFRDNSGKDFLISVSLGGLKFLQLNPLPELTPRKVLLEHVPLQAIIFQNKLLLR 696
Query: 726 TFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYC 785
T +S E + V DD +F S + E I S
Sbjct: 697 TLENRYEDYESYKENYHLELVDSYDDNSFRVFSFTENERCEKVLKINESSL--------L 748
Query: 786 VGTAYVLPEENEPTKGRILV--FIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKI 843
VGT+ + ++ P GR+++ F E L++++ AV L +N + + A Q++
Sbjct: 749 VGTSIIEQDKLVPVNGRLILLEFEKELQSLKVVSSMVLSAAVIDLGVYNDRYIVAFGQQV 808
Query: 844 QLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEE 903
+ K + + S +L L V+ G+ I + D + +++ + ++ +
Sbjct: 809 AIVKLT---EERLMIDSRISLGSIVLQLIVE--GNEIAIADSIGRFTIMYFDGQKFIVVA 863
Query: 904 RARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFV 963
R + N + A + + +Y+ A N+ L +R N + +R E V YHL + V
Sbjct: 864 RYL-FGENIVKAA-LYEGTVYIIATNSGLLKLLRYNKDAKNFNDRFICESV--YHLHDKV 919
Query: 964 NRFRHGSLVMRLPDSDVGQI--PTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKV-I 1020
++F++ P ++ P ++F T G IG I SL ++ L LE+L +RK+
Sbjct: 920 SKFQN------FPITNTNSFLEPKMLFATEIGAIGSIVSLKDKE-LELEELTRKIRKLKF 972
Query: 1021 KGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKR 1080
+ +++E E + F+DGDL+ +D+ R E+ + LC+
Sbjct: 973 SYLSSMDYESI-----EADLISPVPFIDGDLV---IDVKRWASSELFR--------LCRS 1016
Query: 1081 VE 1082
VE
Sbjct: 1017 VE 1018
>sp|Q10570|CPSF1_HUMAN Cleavage and polyadenylation specificity factor subunit 1 OS=Homo
sapiens GN=CPSF1 PE=1 SV=2
Length = 1443
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 115/460 (25%), Positives = 195/460 (42%), Gaps = 62/460 (13%)
Query: 670 VSHMCPFNSAAFPDS-LAIAKEGELTIGTIDDI----QKLHIRSIPLGEHPRRICHQEQS 724
V PF++ P L ++GEL I + +R IPL + + +S
Sbjct: 972 VDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRCTAHYVAYHVES 1031
Query: 725 RTFAICSLKNQSCAE-----------------------ESEMHFVRLLDDQTFEFI--ST 759
+ +A+ + N CA + E ++L+ ++E I +
Sbjct: 1032 KVYAVATSTNTPCARIPRMTGEEKEFETIERDERYIHPQQEAFSIQLISPVSWEAIPNAR 1091
Query: 760 YPLDTFEYGCSILSCSFSDDSNV-----YYCVGTAYVLPEENEPTKGRILVF-----IVE 809
L +E+ + + S + V Y GT + EE +GRIL+ + E
Sbjct: 1092 IELQEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQGEEVT-CRGRILIMDVIEVVPE 1150
Query: 810 DG------KLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECG 863
G K +++ EKE KG V +L NG L++AI QKI L W LR EL
Sbjct: 1151 PGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQKIFL--WSLR---ASELTGMAF 1205
Query: 864 HHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDI 923
+ + + +FI+ D+MKSISLL Y+ E + +RD + +V+ + D+
Sbjct: 1206 IDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTLSLVSRDAKPLEVYSVDFMVDNA 1265
Query: 924 YLG---AENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFR----HGSLVMRLP 976
LG ++ + NL E RL ++H+G VN F G+
Sbjct: 1266 QLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTFWRTPCRGATEGLSK 1325
Query: 977 DSDVGQIPTVI-FGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFN 1035
S V + + F T++G IG++ + + Y L LQ L ++ GLN +R +
Sbjct: 1326 KSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRAFRMLH 1385
Query: 1036 NEKKTVD--AKNFLDGDLIESFLDLSRTRMDEISKTMNVS 1073
+++T+ +N LDG+L+ +L LS E++K + +
Sbjct: 1386 VDRRTLQNAVRNVLDGELLNRYLYLSTMERSELAKKIGTT 1425
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 119/633 (18%), Positives = 243/633 (38%), Gaps = 171/633 (27%)
Query: 10 AHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTP------------------QGLQ 51
AH PT + S NF + E NL++A +++ ++ L + L+
Sbjct: 8 AHPPTGLEFSMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEALTKNDRSTEGKAHREKLE 67
Query: 52 PMLDVPIYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAM-----GD 106
+G + ++ + G +D L ++ + K V+++D + +L T ++ +
Sbjct: 68 LAASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPE 127
Query: 107 VSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPF-------DNKGQLKEA------ 153
+ D + ++ + DPD R + +Y V+PF +++G + E
Sbjct: 128 LRDGFVQNVHTPRVRV-DPDGRCAAMLVYGTRLVVLPFRRESLAEEHEGLVGEGQRSSFL 186
Query: 154 ----FNIR-LEE--LQVLDIKFLYGCAKPTIVVLYQDNKD-----ARHVKTYEVALKDKD 201
++R L+E L ++D++FL+G +PT+++L++ N+ A T + +
Sbjct: 187 PSYIIDVRALDEKLLNIIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLN 246
Query: 202 FVEGP----WSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS-------------ANA 244
+ WS +L + VP P+ GV++ +++Y +
Sbjct: 247 ITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVVFAVNSLLYLNQSVPPYGVALNSLTTG 306
Query: 245 FKAIPIRPSITKAYGRVDADGS--------RYLLGDHAGLLHLL-VITHEKEKVTGLKIE 295
A P+R T+ R+ D + + ++ G +++L +IT V +
Sbjct: 307 TTAFPLR---TQEGVRITLDCAQATFISYDKMVISLKGGEIYVLTLITDGMRSVRAFHFD 363
Query: 296 LLGETSIASTISYLDNAVVYIGSSYGDSQLI----KLNLQP------------------- 332
+ + +++ ++ +++GS G+S L+ KL P
Sbjct: 364 KAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASAVREAADKEEPPSKKKR 423
Query: 333 -DAKGSY--------------------------------VEVLERYVNLGPIVDFCVVD- 358
DA + EV + +N+GP + V +
Sbjct: 424 VDATAGWSAAGKSVPQDEVDEIEVYGSEAQSGTQLATYSFEVCDSILNIGPCANAAVGEP 483
Query: 359 --LERQGQG------QVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSL----- 405
L + Q ++V CSG K+G+L +++ I + EL G MW++
Sbjct: 484 AFLSEEFQNSPEPDLEIVVCSGHGKNGALSVLQKSIRPQVVTTFELPGCYDMWTVIAPVR 543
Query: 406 RSSTDDP--------------------FDTFLVVSFISETRILAMNLEDELEETEIEGFC 445
+ D+P FL++S T IL E+ E + GF
Sbjct: 544 KEEEDNPKGEGTEQEPSTTPEADDDGRRHGFLILSREDSTMILQTG--QEIMELDTSGFA 601
Query: 446 SQTQTLFCHDAIYNQ-LVQVTSGSVRLVSSTSR 477
+Q T+F + N+ +VQV+ +RL+ ++
Sbjct: 602 TQGPTVFAGNIGDNRYIVQVSPLGIRLLEGVNQ 634
>sp|Q9EPU4|CPSF1_MOUSE Cleavage and polyadenylation specificity factor subunit 1 OS=Mus
musculus GN=Cpsf1 PE=1 SV=1
Length = 1441
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 112/466 (24%), Positives = 193/466 (41%), Gaps = 74/466 (15%)
Query: 670 VSHMCPFNSAAFPDS-LAIAKEGELTIGTIDDI----QKLHIRSIPLGEHPRRICHQEQS 724
+ PF++ P L ++GEL I + +R IPL + + +S
Sbjct: 970 IDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRCTAHYVAYHVES 1029
Query: 725 RTFAICSLKNQSCAE-----------------------ESEMHFVRLLDDQTFEFI--ST 759
+ +A+ + N C + E ++L+ ++E I +
Sbjct: 1030 KVYAVATSTNTPCTRIPRMTGEEKEFEAIERDDRYIHPQQEAFSIQLISPVSWEAIPNAR 1089
Query: 760 YPLDTFEYGCSILSCSFSDDSNV-----YYCVGTAYVLPEENEPTKGRILVF-----IVE 809
L+ +E+ + + S + V Y GT + EE +GRIL+ + E
Sbjct: 1090 IELEEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQGEEVT-CRGRILIMDVIEVVPE 1148
Query: 810 DG------KLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECG 863
G K +++ EKE KG V +L NG L++AI QKI L W LR EL
Sbjct: 1149 PGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQKIFL--WSLR---ASELTGMAF 1203
Query: 864 HHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDI 923
+ + + +FI+ D+MKSISLL Y+ E + +RD + +V+ + D+
Sbjct: 1204 IDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTLSLVSRDAKPLEVYSVDFMVDNA 1263
Query: 924 YLG---AENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDV 980
LG ++ + NL E RL ++H+G VN F R P
Sbjct: 1264 QLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTF------WRTPCRGA 1317
Query: 981 GQIPT-----------VIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHE 1029
+ P+ F T++G IG++ + + Y L LQ L ++ GLN
Sbjct: 1318 AEGPSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPR 1377
Query: 1030 QWRSFNNEKKTVD--AKNFLDGDLIESFLDLSRTRMDEISKTMNVS 1073
+R + +++ + +N LDG+L+ +L LS E++K + +
Sbjct: 1378 AFRMLHVDRRILQNAVRNVLDGELLNRYLYLSTMERSELAKKIGTT 1423
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 117/631 (18%), Positives = 243/631 (38%), Gaps = 169/631 (26%)
Query: 10 AHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTP------------------QGLQ 51
AH PT + + NF + E NL++A +++ ++ L + L+
Sbjct: 8 AHPPTGLEFTMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEALTKNDGSTEGKAHREKLE 67
Query: 52 PMLDVPIYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAM-----GD 106
+ +G + ++ + G +D L ++ + K V+++D + +L T ++ +
Sbjct: 68 LVASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPE 127
Query: 107 VSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPF-------DNKGQLKEA------ 153
+ D + ++ + DPD R + +Y V+PF +++G + E
Sbjct: 128 LRDGFVQNVHTPRVRV-DPDGRCAAMLIYGTRLVVLPFRRESLAEEHEGLMGEGQRSSFL 186
Query: 154 ----FNIR-LEE--LQVLDIKFLYGCAKPTIVVLYQDNKD-----ARHVKTYEVALKDKD 201
++R L+E L ++D++FL+G +PT+++L++ N+ A T + +
Sbjct: 187 PSYIIDVRALDEKLLNIIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLN 246
Query: 202 FVEGP----WSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS-------------ANA 244
+ WS +L + VP P+ GV+I +++Y +
Sbjct: 247 ITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVIFAVNSLLYLNQSVPPYGVALNSLTTG 306
Query: 245 FKAIPIRPSITKAYGRVDADGS--------RYLLGDHAGLLHLL-VITHEKEKVTGLKIE 295
A P+R T+ R+ D + + ++ G +++L +IT V +
Sbjct: 307 TTAFPLR---TQEGVRITLDCAQAAFISYDKMVISLKGGEIYVLTLITDGMRSVRAFHFD 363
Query: 296 LLGETSIASTISYLDNAVVYIGSSYGDSQLIKL-----------------NLQPDAKGSY 338
+ + +++ ++ +++GS G+S L+K +P +K
Sbjct: 364 KAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASSVREAADKEEPPSKKKR 423
Query: 339 VE--------------------------------------VLERYVNLGPIVDFCVVD-- 358
VE V + +N+GP + V +
Sbjct: 424 VEPAVGWTGGKTVPQDEVDEIEVYGSEAQSGTQLATYSFEVCDSMLNIGPCANAAVGEPA 483
Query: 359 -LERQGQG------QVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSL------ 405
L + Q ++V CSG K+G+L +++ I + EL G MW++
Sbjct: 484 FLSEEFQNSPEPDLEIVVCSGYGKNGALSVLQKSIRPQVVTTFELPGCYDMWTVIAPVRK 543
Query: 406 ------------------RSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQ 447
++ D FL++S T IL E+ E + GF +Q
Sbjct: 544 EEEETPKAESTEQEPSAPKAEEDGRRHGFLILSREDSTMILQTG--QEIMELDTSGFATQ 601
Query: 448 TQTLFCHDAIYNQ-LVQVTSGSVRLVSSTSR 477
T+F + N+ +VQV+ +RL+ ++
Sbjct: 602 GPTVFAGNIGDNRYIVQVSPLGIRLLEGVNQ 632
>sp|Q10569|CPSF1_BOVIN Cleavage and polyadenylation specificity factor subunit 1 OS=Bos
taurus GN=CPSF1 PE=1 SV=1
Length = 1444
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 111/466 (23%), Positives = 193/466 (41%), Gaps = 74/466 (15%)
Query: 670 VSHMCPFNSAAFPDS-LAIAKEGELTIGTIDDI----QKLHIRSIPLGEHPRRICHQEQS 724
+ PF++ P L ++GEL I + +R IPL + + +S
Sbjct: 973 IDSFAPFHNINCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRCTAHYVAYHVES 1032
Query: 725 RTFAICSLKNQSCAE-----------------------ESEMHFVRLLDDQTFEFI--ST 759
+ +A+ + + C + E ++L+ ++E I +
Sbjct: 1033 KVYAVATSTSTPCTRVPRMTGEEKEFETIERDERYVHPQQEAFCIQLISPVSWEAIPNAR 1092
Query: 760 YPLDTFEYGCSILSCSFSDDSNV-----YYCVGTAYVLPEENEPTKGRILVF-----IVE 809
L+ +E+ + + S + V Y GT + EE +GRIL+ + E
Sbjct: 1093 IELEEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQGEEVT-CRGRILIMDVIEVVPE 1151
Query: 810 DG------KLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECG 863
G K +++ EKE KG V +L NG L++AI QKI L W LR EL
Sbjct: 1152 PGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQKIFL--WSLR---ASELTGMAF 1206
Query: 864 HHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDI 923
+ + + +FI+ D+MKSISLL Y+ E + +RD + +V+ + D+
Sbjct: 1207 IDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTLSLVSRDAKPLEVYSVDFMVDNA 1266
Query: 924 YLG---AENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDV 980
LG ++ + NL E RL ++H+G VN F R P
Sbjct: 1267 QLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTF------WRTPCRGA 1320
Query: 981 GQIPT-----------VIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHE 1029
+ P+ F T++G IG++ + + Y L LQ L ++ GLN
Sbjct: 1321 AEGPSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPR 1380
Query: 1030 QWRSFNNEKKTVD--AKNFLDGDLIESFLDLSRTRMDEISKTMNVS 1073
+R + +++ + +N LDG+L+ +L LS E++K + +
Sbjct: 1381 AFRMLHVDRRVLQNAVRNVLDGELLNRYLYLSTMERGELAKKIGTT 1426
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/395 (18%), Positives = 163/395 (41%), Gaps = 81/395 (20%)
Query: 10 AHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQP----------------- 52
AH PT + S NF + E NL++A +++ ++ L P
Sbjct: 8 AHPPTGLEFSMYCNFFNNSERNLVVAGTSQLYVYRLNRDSEAPTKNDRSTDGKAHREHRE 67
Query: 53 ----MLDVPIYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAM---- 104
+ +G + ++ + G +D L ++ + K V+++D + +L T ++
Sbjct: 68 KLELVASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFE 127
Query: 105 -GDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPF-------DNKGQLKEA--- 153
++ D + ++ + DPD R + +Y V+PF +++G + E
Sbjct: 128 EPELRDGFVQNVHTPRVRV-DPDGRCAAMLIYGTRLVVLPFRRESLAEEHEGLVGEGQRS 186
Query: 154 -------FNIR-LEE--LQVLDIKFLYGCAKPTIVVLYQDNKD-----ARHVKTYEVALK 198
++R L+E L ++D++FL+G +PT+++L++ N+ A T +
Sbjct: 187 SFLPSYIIDVRALDEKLLNIVDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAI 246
Query: 199 DKDFVEGP----WSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS------------- 241
+ + WS +L + VP P+ GV+I +++Y +
Sbjct: 247 SLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVIFAVNSLLYLNQSVPPYGVALNSL 306
Query: 242 ANAFKAIPIRPSITKAYGRVDADGS--------RYLLGDHAGLLHLL-VITHEKEKVTGL 292
A P+R T+ R+ D + + ++ G +++L +IT V
Sbjct: 307 TTGTTAFPLR---TQEGVRITLDCAQAAFISYDKMVISLKGGEIYVLTLITDGMRSVRAF 363
Query: 293 KIELLGETSIASTISYLDNAVVYIGSSYGDSQLIK 327
+ + + +++ ++ +++GS G+S L+K
Sbjct: 364 HFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLK 398
Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 36/172 (20%)
Query: 340 EVLERYVNLGPIVDFCVVD---LERQGQG------QVVTCSGAYKDGSLRIVRNGIGINE 390
EV + +N+GP + + + L + Q ++V CSG K+G+L +++ I
Sbjct: 466 EVCDSILNIGPCANAAMGEPAFLSEEFQNSPEPDLEIVVCSGYGKNGALSVLQKSIRPQV 525
Query: 391 QASVELQGIKGMWSL------------------------RSSTDDPFDTFLVVSFISETR 426
+ EL G MW++ + D FL++S T
Sbjct: 526 VTTFELPGCYDMWTVIAPVRKEQEETLKGEGTEPEPGAPEAEDDGRRHGFLILSREDSTM 585
Query: 427 ILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQ-LVQVTSGSVRLVSSTSR 477
IL E+ E + GF +Q T+F + N+ +VQV+ +RL+ ++
Sbjct: 586 ILQTG--QEIMELDASGFATQGPTVFAGNIGDNRYIVQVSPLGIRLLEGVNQ 635
>sp|Q5A7S5|RSE1_CANAL Pre-mRNA-splicing factor RSE1 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=RSE1 PE=3 SV=1
Length = 1219
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 248/1226 (20%), Positives = 489/1226 (39%), Gaps = 194/1226 (15%)
Query: 2 SIWNYVVTAHKPTNVTHSCVGNF-----TSPQELNLIIAKCTRIEIHLLTPQG--LQPML 54
S++ Y +T P+ S VG F ++ L++ T +++ + + L+
Sbjct: 39 SVYLYNLTLKPPSYYISSIVGQFYKQDNSTKNAQQLVLVSSTTLQLFEINEEAGKLELQS 98
Query: 55 DVPIYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIGRP 114
+ G I ++E + D + I ++ +LQ+D ++ + I++ ++
Sbjct: 99 SQNLLGIINSIE--KICLSEVDGVVITSDSGNLSILQYDNKTKKFISKIQEPMTKNGWGR 156
Query: 115 TDNGQIGIIDPD--CRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKF---- 168
G+ IDP+ C L+ + LF I ++ G + + + QVL +K
Sbjct: 157 NYVGENLAIDPENRCILVAAMEKNKLFYKIESNSSGSKELSSPLEAHSKQVLCLKIVALN 216
Query: 169 ------LYGC-----AKPTIVVLYQDNKDARHVKTYEVALKDKDFVEGPWSQNN--LDNG 215
L+G K I+ Y+ ++ HV +K K P S N+ L N
Sbjct: 217 TDHNNPLFGALELTPEKKCIINYYELDQGLNHV------VKKK-----PNSSNSDPLPND 265
Query: 216 ADLLIPVPPPLCGVLIIGEETIVYCSANA---FKAIPIRPSITKAYGRVD-----ADGSR 267
+ LIP+P + G+++ G Y + + +P R T+ V+ +
Sbjct: 266 VNYLIPLPGHIGGMVVCGTNWCFYDKLDGPRIYLPLPRRNGQTQDSIIVNHVTHVLKKKK 325
Query: 268 Y--LLGDHAGLLHLLVITHE--KEKVTGLKIELLGETSIASTISYLDNAVVY-------- 315
+ LL + G L L + ++ KE + + I A +++ N ++
Sbjct: 326 FFILLQNALGDLFKLTVDYDFDKEIIKNISITYFDTIPPALSLNIFKNGFLFANVLNNDK 385
Query: 316 -------IGSSYGDSQLI-------KLNLQPDAKGSY----------VEVLERYVNLGPI 351
+G + +L+ LN ++ S+ ++VLE L PI
Sbjct: 386 LLYQFEKLGDDLTEGELVINSSDYESLNSVRESVTSFKLKGLDNLALIDVLE---TLSPI 442
Query: 352 VDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQ-GIKGMWSLRSSTD 410
D ++D ++VT S ++ + +G+ L +++ + S +
Sbjct: 443 TDSKIID------SKLVTLSSH---SYVKSITHGVPTTTLVESPLPITPTDIFTTKLSLE 493
Query: 411 DPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVR 470
D +LV+S ++ L +++ + +E+ E F T+ +VQ+ S ++
Sbjct: 494 SANDEYLVISSSLSSKTLVLSIGEVVEDVEDSEFVLDQPTIAVQQVGIASVVQIYSNGIK 553
Query: 471 LVSSTSRELRN-EWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLE 529
V + + + +W P G ++ AT N QVL+A +VY EI D ++ Q
Sbjct: 554 HVRTVNGNKKTTDWFPPAGITITHATTNNQQVLIALSNLSVVYFEI-DATDDQLIEYQDR 612
Query: 530 YEI-SCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHL----GGEIIPRS 584
EI + + I EN S A+ +D ++++ SL + N + + L +
Sbjct: 613 LEIATTITAMAIQENISEKSPFAIIGCSDETIQVVSLQEHNCLEIKSLQALSANSSSLKM 672
Query: 585 VLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTH-V 643
+ E +++ + +G ++ G L++ + +G++P++L N +
Sbjct: 673 LKSSGKE--THVHIGMENGVYARIKIDTINGNLSNSRVKYIGSKPVSLSVIKFSNEIEGI 730
Query: 644 FAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFP-DSLAIAKEGELTIGTI---- 698
A S P + Y + + ++++ F S + + K+ L I ++
Sbjct: 731 LAISSAPWISYLYRDSFKITPLLEIDITNGSSFISEDIGGEGIVGIKDNNLIIFSVGKED 790
Query: 699 ---DDIQKLHIRSIPLGEHPRRICHQEQSRTFAI-----------CSLKNQSCAEESEMH 744
D Q L I + L PR++ +R F C++ E +
Sbjct: 791 SVFDPSQDLTIATTKLRYTPRKMI-TNGNRLFISESEYNVQGPFKCNINGDVKENVDEDY 849
Query: 745 F---------------VRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSN-----VYY 784
+ ++++D ++ + I + LD E S+ + SF+ S +
Sbjct: 850 YEAFGYEWKQNSWASCIQVVDSKSNQVIQSLQLDGNESIVSMSAVSFNKTSTPSVPASHL 909
Query: 785 CVGTAY---VLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQ 841
VG +LP N K + F + LQL+ + E L F KLL A
Sbjct: 910 VVGVCTNQTILP--NSYDKSYLYTFKIGKKHLQLVHKTELDHIPQVLENFQDKLLVASGN 967
Query: 842 KIQLYKWMLRDDGTRELQSEC----GHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHE 897
I+LY D G ++L + +I + QT + I++ D KS S++ K +
Sbjct: 968 HIRLY-----DIGQKQLLKKSTTIIDFSTNINKIIPQT--NRIIICDSHKS-SIVFAKFD 1019
Query: 898 EGAIE--ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVR----------------KN 939
E + A D ++++ LD D +G + N+F R K
Sbjct: 1020 ESQNQFVPFADDVMKRQITSIMNLDIDTLIGGDKFGNIFVTRIDEDISKQADDDWTILKT 1079
Query: 940 SEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIA 999
+G + +L+ + E+H+G+ + F G L ++ +VI+ + G IG++
Sbjct: 1080 QDGILNSCPYKLQNLIEFHIGDIITSFNLGCL-------NLAGTESVIYTGLQGTIGLLI 1132
Query: 1000 SLPHEQYL-FLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDL 1058
L + + L LQ +++ + G +H + RS+ N KN +DGDL+E FL+
Sbjct: 1133 PLVSKSEVELLFNLQLYMQQSQNNLVGKDHLKLRSYYNP-----IKNVIDGDLLERFLEF 1187
Query: 1059 SRTRMDEISKTMNVSVEELCKRVEEL 1084
+ EIS+ +N SV ++ K++ +L
Sbjct: 1188 DISLKIEISRKLNKSVNDIEKKLIDL 1213
>sp|Q7XWP1|CPSF1_ORYSJ Probable cleavage and polyadenylation specificity factor subunit 1
OS=Oryza sativa subsp. japonica GN=Os04g0252200 PE=3 SV=2
Length = 1441
Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 160/353 (45%), Gaps = 33/353 (9%)
Query: 754 FEFISTYPLDTFEYGCSI----LSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVF--I 807
+E ST P+ FE ++ L + + ++ +GTAYVL E+ +GR+L+F
Sbjct: 1095 WETKSTIPMQLFENALTVRIVTLHNTTTKENETLLAIGTAYVL-GEDVAARGRVLLFSFT 1153
Query: 808 VEDGKLQLIAE---KETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGH 864
+ L+ E KE+KGAV ++ + G LL A KI L KW EL + +
Sbjct: 1154 KSENSQNLVTEVYSKESKGAVSAVASLQGHLLIASGPKITLNKWT-----GAELTAVAFY 1208
Query: 865 HGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIY 924
+ + + +F++ GD+ KSI L +K + + A+D+ + A E L D
Sbjct: 1209 DAPLHVVSLNIVKNFVLFGDIHKSIYFLSWKEQGSQLSLLAKDFGSLDCFATEFLIDGST 1268
Query: 925 LG-----AENNFNLFTVRKNSEGATDEERG-RLEVVGEYHLGEFVNRFRHGSLVMRLPDS 978
L ++ N +F + + +G +L E+H+G + +F + LP
Sbjct: 1269 LSLVASDSDKNVQIFYY---APKMVESWKGQKLLSRAEFHVGAHITKFLR---LQMLPTQ 1322
Query: 979 DVGQIPT----VIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSF 1034
+ T ++FG ++G IG IA + + L+ LQ L + V GLN +R F
Sbjct: 1323 GLSSEKTNRFALLFGNLDGGIGCIAPIDELTFRRLQSLQRKLVDAVPHVCGLNPRSFRQF 1382
Query: 1035 NNEKK--TVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELT 1085
++ K N +D +L+ S+ LS ++++ + + ++ +++
Sbjct: 1383 HSNGKGHRPGPDNIIDFELLCSYEMLSLDEQLDVAQQIGTTRSQILSNFSDIS 1435
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 91/397 (22%), Positives = 162/397 (40%), Gaps = 109/397 (27%)
Query: 158 LEELQVLDIKFLYGCAKPTIVVLYQDNKD------ARH----VKTYEVALKDKDFVEGP- 206
L+ V D F++G +P +V+L++ ++H + + +++ K + P
Sbjct: 246 LDMNHVKDFAFVHGYIEPVLVILHEQEPTWAGRILSKHHTCMISAFSISMTLK---QHPV 302
Query: 207 -WSQNNLDNGADLLIPVPPPLCGVLIIGEETIVY------CSA--NAFKAIPI-RPSITK 256
WS NL + A L+ VPPP+ GVL+I +I Y CS N F + P P I+K
Sbjct: 303 IWSAANLPHDAYQLLAVPPPISGVLVICANSIHYHSQSTSCSLDLNNFSSHPDGSPEISK 362
Query: 257 AYGRVDADGSR--------YLLGDHAGLLHLLVITHEKEKVTGL-----KIELLGE--TS 301
+ +V+ D ++ + AG + LL + ++ V L K +L TS
Sbjct: 363 SNFQVELDAAKATWLSNDIVMFSTKAGEMLLLTVVYDGRVVQRLDLMKSKASVLSSAVTS 422
Query: 302 IASTISYL-----DNAVVYIGSSYGDSQLIKL---------------------------- 328
I ++ +L D+ +V S L L
Sbjct: 423 IGNSFFFLGSRLGDSLLVQFSYCASKSVLQDLTNERSADIEGDLPFSKRLKRIPSDVLQD 482
Query: 329 ----------------NLQPDAKGSYVEVLERYVNLGPIVDFC----------VVDLERQ 362
+L+ K SY+ V + +N+GP+ DF + +Q
Sbjct: 483 VTSVEELSFQNIIAPNSLESAQKISYI-VRDALINVGPLKDFSYGLRANADPNAMGNAKQ 541
Query: 363 GQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSL-------RSSTDDPFDT 415
++V CSG K+GSL +++ I + VEL +G+W++ + + D+ +
Sbjct: 542 SNYELVCCSGHGKNGSLSVLQQSIRPDLITEVELPSCRGIWTVYYKSYRGQMAEDNEYHA 601
Query: 416 FLVVSFISETRILAMNLEDELEE-TEIEGFCSQTQTL 451
+L++S E R + + D+L E TE + Q T+
Sbjct: 602 YLIISL--ENRTMVLETGDDLGEVTETVDYFVQASTI 636
>sp|Q9V726|CPSF1_DROME Cleavage and polyadenylation specificity factor subunit 1
OS=Drosophila melanogaster GN=Cpsf160 PE=1 SV=1
Length = 1455
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 108/436 (24%), Positives = 198/436 (45%), Gaps = 64/436 (14%)
Query: 706 IRSIPLGEHPRRICHQEQSRTFAICSL-------------KNQSCAEESE-MHFVR---- 747
+R +PL PR++ + ++R + + + +++ +EES F+
Sbjct: 1026 VRKVPLRCTPRQLVYHRENRVYCLITQTEEPMTKYYRFNGEDKELSEESRGERFIYPIGS 1085
Query: 748 -----LLDDQTFEFISTYPLDTFE-----YGCSILSCSFSDDSN---VYYCVGTAYVLPE 794
L+ +T+E + + TFE I+ S+ + Y C+GT +
Sbjct: 1086 QFEMVLISPETWEIVPDASI-TFEPWEHVTAFKIVKLSYEGTRSGLKEYLCIGTNFNY-S 1143
Query: 795 ENEPTKGRILVF-----IVEDGK------LQLIAEKETKGAVYSLNAFNGKLLAAINQKI 843
E+ ++G I ++ + E GK ++ I +KE KG V +++ G L+ + QKI
Sbjct: 1144 EDITSRGNIHIYDIIEVVPEPGKPMTKFKIKEIFKKEQKGPVSAISDVLGFLVTGLGQKI 1203
Query: 844 QLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEE 903
Y W LRD +L +I + T I + D+ KSISLL ++ E +
Sbjct: 1204 --YIWQLRDG---DLIGVAFIDTNIYVHQIITVKSLIFIADVYKSISLLRFQEEYRTLSL 1258
Query: 904 RARDYNANWMSAVEILDDDIYLG-----AENNFNLFTVRKNSEGATDEERGRLEVVGEYH 958
+RD+N + +E + D+ LG AE N ++ + + + ++ L +YH
Sbjct: 1259 ASRDFNPLEVYGIEFMVDNSNLGFLVTDAERNIIVYMYQPEARESLGGQK--LLRKADYH 1316
Query: 959 LGEFVNR-FR----HGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQ 1013
LG+ VN FR L R P + V++GT++G +G LP + Y LQ
Sbjct: 1317 LGQVVNTMFRVQCHQKGLHQRQPFLYENK-HFVVYGTLDGALGYCLPLPEKVYRRFLMLQ 1375
Query: 1014 TNLRKVIKGVGGLNHEQWRSFNNEKKT--VDAKNFLDGDLIESFLDLSRTRMDEISKTMN 1071
L + + GLN +++R+ + KK ++ +DGDLI S+ ++ + +E++K +
Sbjct: 1376 NVLLSYQEHLCGLNPKEYRTLKSSKKQGINPSRCIIDGDLIWSYRLMANSERNEVAKKIG 1435
Query: 1072 VSVEELCKRVEELTRL 1087
EE+ + E+ RL
Sbjct: 1436 TRTEEILGDLLEIERL 1451
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 84/400 (21%), Positives = 158/400 (39%), Gaps = 85/400 (21%)
Query: 10 AHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTP-------QGLQP---------- 52
H T V S F + + NL++A ++++ + P Q L P
Sbjct: 8 THSATAVEFSIACRFFNNLDENLVVAGANVLKVYRIAPNVEASQRQKLNPSEMRLAPKMR 67
Query: 53 ---MLDVPIYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSD 109
+ +YG + +L+ G +D L I+ + K VLQ D ++ L T ++ +
Sbjct: 68 LECLATYTLYGNVMSLQCVSLAGAMRDALLISFKDAKLSVLQHDPDTFALKTLSLHYFEE 127
Query: 110 RIGRPTDNGQIGI----IDPDCRLIGLHLYDGLFKVIPFDNKGQLKE------------- 152
R G+ + +DPD R + +Y V+PF L E
Sbjct: 128 DDIRGGWTGRYFVPTVRVDPDSRCAVMLVYGKRLVVLPFRKDNSLDEIELADVKPIKKAP 187
Query: 153 -----------AFNIRLEEL-----QVLDIKFLYGCAKPTIVVLYQDNKDAR-HVKTYE- 194
++ I L +L VLDI+FL+G +PT+++LY+ + +K
Sbjct: 188 TAMVSRTPIMASYLIALRDLDEKIDNVLDIQFLHGYYEPTLLILYEPVRTCPGRIKVRSD 247
Query: 195 ------VALKDKDFVEG-PWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVY-------- 239
++L + V W+ N+L + P+ P+ G L++ ++Y
Sbjct: 248 TCVLVAISLNIQQRVHPIIWTVNSLPFDCLQVYPIQKPIGGCLVMTVNAVIYLNQSVPPY 307
Query: 240 -----CSANAFKAIPIRP------SITKA-YGRVDADGSRYLLGDHAGLLHLLVITHEKE 287
SA+ A P++P S+ A + +D D + ++ G L++L + +
Sbjct: 308 GVSLNSSADNSTAFPLKPQDGVRISLDCANFAFIDVD--KLVISLRTGDLYVLTLCVDSM 365
Query: 288 K-VTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQLI 326
+ V + + S I L + +++GS G+S L+
Sbjct: 366 RTVRNFHFHKAAASVLTSCICVLHSEYIFLGSRLGNSLLL 405
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 26/159 (16%)
Query: 340 EVLERYVNLGPIVDFCV---VDLERQG-------------QGQVVTCSGAYKDGSLRIVR 383
EV + +N+ PI C V+ E G + ++V +G K+G+L +
Sbjct: 485 EVCDSLMNVAPINYMCAGERVEFEEDGVTLRPHAESLQDLKIELVAATGHSKNGALSVFV 544
Query: 384 NGIGINEQASVELQGIKGMWSL------RSSTDDPFDTFLVVSFISETRILAMNLEDELE 437
N I S EL G +W++ +SS +D D F+++S + T +L E+
Sbjct: 545 NCINPQIITSFELDGCLDVWTVFDDATKKSSRNDQHD-FMLLSQRNSTLVLQTG--QEIN 601
Query: 438 ETEIEGFCSQTQTLFCHDAIYNQ-LVQVTSGSVRLVSST 475
E E GF T+F + + +VQVT+ VRL+ T
Sbjct: 602 EIENTGFTVNQPTIFVGNLGQQRFIVQVTTRHVRLLQGT 640
>sp|A8XPU7|CPSF1_CAEBR Probable cleavage and polyadenylation specificity factor subunit 1
OS=Caenorhabditis briggsae GN=cpsf-1 PE=3 SV=1
Length = 1454
Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 146/315 (46%), Gaps = 35/315 (11%)
Query: 791 VLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWML 850
V+PE +PT R K++++ +KE KG V L A NG LL+ + QK+ + W
Sbjct: 1153 VVPEPGQPTSNR---------KIKVLYDKEQKGPVTGLCAINGLLLSGMGQKV--FIWQF 1201
Query: 851 RDDGTRELQSECGHHGHILALY-VQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYN 909
+D+ + S H ++ L+ ++T + D +S+SL+ ++ E A+ +RD
Sbjct: 1202 KDNDLMGI-SFLDMHYYVYQLHSIRT---IALALDARESMSLIRFQEENKAMSIASRDDR 1257
Query: 910 --ANWMSAVEILDDDIYLG-----AENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEF 962
A A E L D +++G N LF+ + + E RL V ++G
Sbjct: 1258 KCAQAPMASEFLVDGMHIGFLLSDEHGNITLFSYSPEAPESNGGE--RLTVKAAINIGTN 1315
Query: 963 VNRFRHGSLVMRLPDS-------DVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTN 1015
+N F L DS ++ Q IFG+++G G I L + Y L LQT
Sbjct: 1316 INAFLRVKGHTSLLDSSSPEERENIEQRMNTIFGSLDGSFGYIRPLTEKSYRRLHFLQTF 1375
Query: 1016 LRKVIKGVGGLNHEQWRSFNNEKKTV---DAKNFLDGDLIESFLDLSRTRMDEISKTMNV 1072
+ V + GL+ + RS + V +A+N +DGD++E +L LS ++++ + V
Sbjct: 1376 IGSVTPQIAGLHIKGARSSKPSQPIVNGRNARNLIDGDVVEQYLHLSVYDKTDLARRLGV 1435
Query: 1073 SVEELCKRVEELTRL 1087
+ + +L R+
Sbjct: 1436 GRYHILDDLMQLRRM 1450
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 90/399 (22%), Positives = 158/399 (39%), Gaps = 93/399 (23%)
Query: 117 NGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEEL-----QVLDIKFLYG 171
N I DP R +Y ++PF + ++ I L+++ V D+ FL G
Sbjct: 138 NPPIVRTDPANRCAASLVYGKHIAILPFHENSKRILSYIIPLKQIDPRLDNVADMVFLEG 197
Query: 172 CAKPTIVVLYQD----------NKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIP 221
+PTI+ LY+ D + V + D+ F W NL + L+
Sbjct: 198 YYEPTILFLYEPLQTTPGRACVRYDTMCIMGVSVNIVDRQFAV-VWQTANLPMDCNSLLS 256
Query: 222 VPPPLCGVLIIGEETIVYCSA-------------NAFKAIPIRPSITKAYGRVDADGSRY 268
+P PL G ++ G TIVY + + F P++ + +D S Y
Sbjct: 257 IPKPLGGAVVFGSNTIVYLNQAVPPCGIVLNSCYDGFTKFPLK-DMKHLKMTLDCSTSVY 315
Query: 269 L------LGDHAGLLHL--LVITHEKEKVTGLKIELLGETSIASTISYLDNAVVYIGSSY 320
+ +G G L+L LV + V L+ + +TSIA T++ +++GS
Sbjct: 316 MEDGRIAVGSREGDLYLLRLVTSSGGATVKSLEFSKVCDTSIAFTLTVCAPGHLFVGSRL 375
Query: 321 GDSQLIKLNL----QPDAK----------------------GSYVEV------------- 341
GDSQL++ L + AK G +E+
Sbjct: 376 GDSQLLEYTLLKVTKESAKKQRLEQQNPSEIELDEDDIELYGGAIEMQQNDDDEQISESL 435
Query: 342 ----LERYVNLGPIVDFC----------VVDLERQGQ-GQVVTCSGAYKDGSLRIVRNGI 386
L+R +N+GP+ C ++D +R+ +VT SG K+G+L + + +
Sbjct: 436 QFRELDRLLNVGPVKSMCFGRPNYMSNDLIDAKRKDPVFDLVTASGHGKNGALCVHQRSM 495
Query: 387 GINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISET 425
S L+G + +W++ ++ +L+VS + T
Sbjct: 496 RPEIITSSLLEGAEQLWAVGRKENESH-KYLIVSRVRST 533
>sp|Q5BDG7|CFT1_EMENI Protein cft1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=cft1 PE=3 SV=1
Length = 1339
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 96/438 (21%), Positives = 192/438 (43%), Gaps = 70/438 (15%)
Query: 706 IRSIPLGEHPRRICHQEQSRTFAI--CSLKNQSCAEESEMH-----------------FV 746
+R++P+G+ ++ + S T+ + C E+ E+H +
Sbjct: 907 MRTVPIGQQIDKLTYVSASDTYVLGTCQRCEFRLPEDDELHPEWRNEEISFLPEVNQSSL 966
Query: 747 RLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVY-----YCVGTAYVLPEENEPTKG 801
+++ +T+ I +YPL+ E+ + + S N + VGT+ E+ P++G
Sbjct: 967 KVVSPKTWSVIDSYPLEPAEHIMVMKTMSLEVSENTHERRDMIVVGTSLAR-GEDIPSRG 1025
Query: 802 RILVF----IVEDG-------KLQLIAEKETKGAVYSLNAFNGK--LLAAINQKIQLYKW 848
I VF +V D +L+LI ++ KGAV +L+ G+ L+AA QK +
Sbjct: 1026 CIYVFEVIEVVPDPEQPETNRRLKLIGKEPVKGAVTALSEIGGQGFLIAAQGQKSMVRG- 1084
Query: 849 MLRDDGT----RELQSECGHHGHILALYVQTRGD-FIVVGDLMKSISLLIYKHEEGAIEE 903
L++DG+ + +C +++ + +G + GD +K + Y E +
Sbjct: 1085 -LKEDGSLLPVAFMDMQC-----FVSVIKELKGTGMCIFGDAVKGLWFAGYSEEPYKMSL 1138
Query: 904 RARDYNANWMSAVEILDDD---IYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLG 960
A+D + + A + L D + A+++ NL+ ++ + E +L ++H G
Sbjct: 1139 FAKDLDYLEVLAADFLPDGNKLFIVVADSDCNLYVLQYDPEDPNSSNGDKLLNRSKFHTG 1198
Query: 961 EFVN-------------RFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYL 1007
F + R GS M + + + V+ + NG IG++ +P E Y
Sbjct: 1199 NFASTVTLLPRTLVSSERAMSGSDKMDI--DNTAPLHQVLVTSHNGSIGLVTCVPEESYR 1256
Query: 1008 FLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEIS 1067
L LQ+ L ++ GLN +R+ ++ + LD +L+ +LD+S+ R EI+
Sbjct: 1257 RLSALQSQLTNTLEHPCGLNPRAYRAVESDASA--GRGMLDSNLLLQYLDMSKQRKAEIA 1314
Query: 1068 KTMNVSVEELCKRVEELT 1085
+ + E+ +E ++
Sbjct: 1315 GRVGATEWEIRADLEAIS 1332
Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 89/421 (21%), Positives = 137/421 (32%), Gaps = 109/421 (25%)
Query: 13 PTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDV---PIYGRIATLEL-- 67
PT VTH+ F S NLI+A+ + ++I L L LD P R T +L
Sbjct: 10 PTGVTHALAVPFLSATANNLIVARTSLLQIFSLRDVSLS-ALDTEVRPAQHRQETCKLVL 68
Query: 68 ---FRPHGEAQDF--------------LFIATERYKFCVLQWDAESSELITRAMG----D 106
++ G D + +A K +++WD E L T ++ D
Sbjct: 69 EREYQLPGTVTDICRVKILKTKSGGDAVLVAFRDAKLSLVEWDPERYGLSTISIHYYERD 128
Query: 107 VSDRIGRPTDNGQIGII---DPDCRLIGLHLYDGLFKVIPFDNKG--------------- 148
R +D G I DP R +IPF G
Sbjct: 129 DMTRSPWASDLSTCGSILSADPGSRCAIFQFGARSLAIIPFHQPGDDLVMDDFGSEPDYE 188
Query: 149 -------QLKEAFNIRLEELQV--------------------LDIKFLYGCAKPTIVVLY 181
+ EA + E Q + + FLY +PT +LY
Sbjct: 189 NRVEGNSRSHEAKDKDAAEYQTPYASSFVLPLTALDPSVIHPISLAFLYEYREPTFGILY 248
Query: 182 ----------QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLI 231
+ KD + L+ + S L + ++ +PPP+ G L+
Sbjct: 249 SQVATSHALLHERKDVVFYTVITLDLEQRASTTL-LSVTRLPSDLFKVVALPPPVGGSLL 307
Query: 232 IGEETIVY---------CSANAFKAIPIRPSITKAYG-----------RVDADGSRYLLG 271
IG +V+ N F S+T R D LL
Sbjct: 308 IGSNELVHIDQAGKTNAVGVNEFSRQASSFSMTDQSDLALRLENCVVERFSDDNGDLLLA 367
Query: 272 DHAGLLHLLVITHEKEKVTGLKIELLGE------TSIASTISYLDNAVVYIGSSYGDSQL 325
G+ L+ + V+G+ + L S AS+ ++L N V+ GS DS L
Sbjct: 368 LSTGVFALVSFKLDGRSVSGISVRPLSGPSKEFLASTASSSAFLGNGKVFFGSESADSVL 427
Query: 326 I 326
+
Sbjct: 428 L 428
>sp|A1DB13|CFT1_NEOFI Protein cft1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=cft1 PE=3 SV=1
Length = 1400
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 88/371 (23%), Positives = 160/371 (43%), Gaps = 37/371 (9%)
Query: 746 VRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVY-----YCVGTAYVLPEENEPTK 800
++++ +T+ I +Y L EY ++ + N + VGTA+ E+ P++
Sbjct: 1027 LKVVSPRTWTVIDSYSLGPAEYVMAVKNMDLEVSENTHERRNMIVVGTAFAW-GEDIPSR 1085
Query: 801 GRILVFIV-----------EDGKLQLIAEKETKGAVYSLNAFNGK--LLAAINQKIQLYK 847
G I VF V D KL+LI ++ KGAV +L+ G+ L+AA QK +
Sbjct: 1086 GCIYVFEVIKVVPDPEKPETDRKLKLIGKELVKGAVTALSQIGGQGFLIAAQGQKCMVRG 1145
Query: 848 WMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARD 907
L++DG+ + ++ + ++GD +K + Y E + +D
Sbjct: 1146 --LKEDGSLLPVAFMDMQCYVNVVKELKGTGMCIMGDAVKGLWFAGYSEEPYKMSLFGKD 1203
Query: 908 YNANWMSAVEILDDD---IYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVN 964
+ A E L D L A+++ NL ++ + E RL ++H+G F
Sbjct: 1204 QGYLEVVAAEFLPDGDKLFILVADSDCNLHVLQYDPEDPKSSNGDRLLARSKFHMGHFAT 1263
Query: 965 RFRHGSLVM-----RLPDSDVGQIPT------VIFGTVNGVIGVIASLPHEQYLFLEKLQ 1013
M + D D +I + V+ + +G +G++ S+P E Y L LQ
Sbjct: 1264 TMTLLPRTMVSSEKAMADPDSMEIDSQTISQQVLITSQSGSVGIVTSVPEESYRRLSALQ 1323
Query: 1014 TNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVS 1073
+ L ++ GLN +R+ E + LDG+L+ +LD+ + R EI+ +
Sbjct: 1324 SQLTNSLEHPCGLNPRAYRAV--ESDGTAGRGMLDGNLLYQWLDMGQHRKMEIAARVGAH 1381
Query: 1074 VEELCKRVEEL 1084
E+ +E +
Sbjct: 1382 EWEIKADLEAI 1392
>sp|Q4WCL1|CFT1_ASPFU Protein cft1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=cft1 PE=3 SV=2
Length = 1401
Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 91/371 (24%), Positives = 159/371 (42%), Gaps = 37/371 (9%)
Query: 746 VRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVY-----YCVGTAYVLPEENEPTK 800
++++ +T+ I +Y L EY ++ + N + VGTA+ E+ P++
Sbjct: 1028 LKVVSPRTWTVIDSYSLGPDEYVMAVKNMDLEVSENTHERRNMIVVGTAFAR-GEDIPSR 1086
Query: 801 GRILVFIV-----------EDGKLQLIAEKETKGAVYSLNAFNGK--LLAAINQKIQLYK 847
G I VF V D KL+LI ++ KGAV +L+ G+ L+AA QK +
Sbjct: 1087 GCIYVFEVIKVVPDPEKPETDRKLKLIGKELVKGAVTALSQIGGQGFLIAAQGQKCMVRG 1146
Query: 848 WMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARD 907
L++DG+ + ++ L ++GD +K + Y E + +D
Sbjct: 1147 --LKEDGSLLPVAFMDMQCYVNVLKELKGTGMCIMGDAVKGLWFAGYSEEPYKMSLFGKD 1204
Query: 908 YNANWMSAVEILDDD---IYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVN 964
+ A E L D L A+++ NL ++ + E RL ++H+G F
Sbjct: 1205 QGYLEVVAAEFLPDGDKLFILVADSDCNLHVLQYDPEDPKSSNGDRLLARSKFHMGHFAT 1264
Query: 965 RFR-------HGSLVMRLPDS---DVGQIPT-VIFGTVNGVIGVIASLPHEQYLFLEKLQ 1013
M PDS D I V+ + +G +G++ S+P E Y L LQ
Sbjct: 1265 TMTLLPRTMVSSEKAMANPDSMEIDSQTISQQVLITSQSGSVGIVTSVPEESYRRLSALQ 1324
Query: 1014 TNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVS 1073
+ L ++ GLN +R+ E + LDG+L+ +LD+ + R EI+ +
Sbjct: 1325 SQLANSLEHPCGLNPRAYRAV--ESDGTAGRGMLDGNLLYQWLDMGQHRKMEIAARVGAH 1382
Query: 1074 VEELCKRVEEL 1084
E+ +E +
Sbjct: 1383 EWEIKADLEAI 1393
Score = 33.5 bits (75), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 90/214 (42%), Gaps = 38/214 (17%)
Query: 161 LQVLDIKFLYGCAKPTIVVLYQ----------DNKDARHVKTYEVALKDKDFVEGPWSQN 210
L + + FLY +PT +LY + KD+ + + L+ + S
Sbjct: 232 LHPVSLAFLYEYREPTFGILYSQIATSHALLSERKDSIFYTVFTLDLEQRASTTL-LSVP 290
Query: 211 NLDNGADLLIPVPPPLCGVLIIGEETIVYC-SANAFKAIPIR--PSITKAYGRVD-ADGS 266
L + ++ +PPP+ G L+IG +V+ A A+ + A+ VD +D +
Sbjct: 291 KLPSDLFKVVALPPPVGGALLIGSNELVHVDQAGKTNAVGVNEFARQVSAFSMVDQSDLA 350
Query: 267 RYLLG-------DHAGLLHL------LVITH---EKEKVTGLKIELL----GET---SIA 303
L G D G L L +V+ H + V+G+ + L G T S A
Sbjct: 351 LRLEGCVVEHISDSTGDLLLVLSSGNMVLVHFQLDGRSVSGISLRPLPTQAGGTIMKSAA 410
Query: 304 STISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGS 337
S+ ++L + V+ GS DS L+ + P+ K S
Sbjct: 411 SSSAFLGSGRVFFGSEDADSVLLSWSSMPNPKKS 444
>sp|A1C3U1|CFT1_ASPCL Protein cft1 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=cft1 PE=3 SV=1
Length = 1401
Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 96/413 (23%), Positives = 172/413 (41%), Gaps = 56/413 (13%)
Query: 706 IRSIPLGEHPRRICHQEQSRTFAICSLKNQ--SCAEESEMH-----------------FV 746
++ + +GEH + + S T+ + + + E+ E+H +
Sbjct: 969 LKKVAIGEHVDHLAYSISSETYVLGTSHSADFKLPEDDELHPEWRNEAISFLPELRQCCL 1028
Query: 747 RLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVY-----YCVGTAYVLPEENEPTKG 801
+++ +T+ I +Y L E ++ + + N + VGTA E+ P +G
Sbjct: 1029 KVVHPKTWTVIDSYTLGPDEEIMAVKNMNLEVSENTHERKNMIVVGTALAR-GEDIPARG 1087
Query: 802 RILVFIV-----------EDGKLQLIAEKETKGAVYSLNAFNGK--LLAAINQKIQLYKW 848
I VF V D KL+LI ++ KGAV +L+ G+ L+AA QK +
Sbjct: 1088 CIYVFEVIKVVPDPEKPETDRKLKLIGKELVKGAVTALSEIGGQGFLIAAQGQKCMVRG- 1146
Query: 849 MLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDY 908
L++DG+ + ++ L +VGD K I Y E + +D
Sbjct: 1147 -LKEDGSLLPVAFMDVQCYVNVLKELKGTGMCIVGDAFKGIWFAGYSEEPYKMSLFGKDL 1205
Query: 909 NANWMSAVEILDDD---IYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNR 965
+ A + L D L A+++ NL ++ E +L V ++H+G F +
Sbjct: 1206 EYPEVVAADFLPDGDKLFILVADSDCNLHVLQYEPEDPMSSNGDKLLVRSKFHMGHFTST 1265
Query: 966 FR-----HGSLVMRLPDSDVGQIPT------VIFGTVNGVIGVIASLPHEQYLFLEKLQT 1014
S + DSD ++ V+ + +G IG++ S+P E Y L LQ+
Sbjct: 1266 LTLLPRTTASYEIPSADSDSMEVDPRITPQQVLITSQSGSIGIVTSIPEESYRRLSALQS 1325
Query: 1015 NLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEIS 1067
L ++ GLN +R+ E + LDG+L+ +L +S+ R EI+
Sbjct: 1326 QLANTVEHPCGLNPRAYRAI--ESDGTAGRGMLDGNLLYQWLSMSKQRRMEIA 1376
>sp|Q9N4C2|CPSF1_CAEEL Probable cleavage and polyadenylation specificity factor subunit 1
OS=Caenorhabditis elegans GN=cpsf-1 PE=3 SV=2
Length = 1454
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 146/312 (46%), Gaps = 29/312 (9%)
Query: 791 VLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWML 850
V+PE ++PT R K++++ +KE KG V L A NG LL + QK+ + W
Sbjct: 1153 VVPEPDQPTSNR---------KIKVLFDKEQKGPVTGLCAINGLLLCGMGQKV--FIWQF 1201
Query: 851 RDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYN- 909
+D+ + S H ++ L+ + + D +S+SL+ ++ + A+ +RD
Sbjct: 1202 KDNDLMGI-SFLDMHYYVYQLH--SLRTIAIACDARESMSLIRFQEDNKAMSIASRDDRK 1258
Query: 910 -ANWMSAVEILDDDIYLG---AENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVN- 964
A A +++ D ++G ++ N+ E RL V ++G +N
Sbjct: 1259 CAQPPMASQLVVDGAHVGFLLSDETGNITMFNYAPEAPESNGGERLTVRAAINIGTNINA 1318
Query: 965 --RFRHGSLVMRLPDSD----VGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRK 1018
R R + +++L + D + Q T +F +++G G + L + Y L LQT +
Sbjct: 1319 FVRLRGHTSLLQLNNEDEKEAIEQRMTTVFASLDGSFGFVRPLTEKSYRRLHFLQTFIGS 1378
Query: 1019 VIKGVGGLNHEQWRSFNNEKKTV---DAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVE 1075
V + GL+ + RS + V +A+N +DGD++E +L LS ++++ + V
Sbjct: 1379 VTPQIAGLHIKGSRSAKPSQPIVNGRNARNLIDGDVVEQYLHLSLYDKTDLARRLGVGRY 1438
Query: 1076 ELCKRVEELTRL 1087
+ + +L R+
Sbjct: 1439 HIIDDLMQLRRM 1450
Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 87/395 (22%), Positives = 153/395 (38%), Gaps = 96/395 (24%)
Query: 124 DPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEEL-----QVLDIKFLYGCAKPTIV 178
DP R +Y ++PF + ++ I L+++ + D+ FL G +PTI+
Sbjct: 145 DPSNRCAACLVYGKHIAILPFHENSKRIHSYVIPLKQIDPRLDNIADMVFLDGYYEPTIL 204
Query: 179 VLYQDNK----------DARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCG 228
LY+ + D + V + D+ F W NL L+P+P PL G
Sbjct: 205 FLYEPIQTTPGRACVRYDTMCIMGVSVNIVDRQFAV-VWQTANLPMDCSQLLPIPKPLGG 263
Query: 229 VLIIGEETIVYCSA-------------NAFKAIPIRPSITKAYGRVDADGSRYL------ 269
L+ G T+VY + + F P++ + +D S Y+
Sbjct: 264 ALVFGSNTVVYLNQAVPPCGLVLNSCYDGFTKFPLK-DLKHLKMTLDCSTSVYMEDGRIA 322
Query: 270 LGDHAGLLHL--LVITHEKEKVTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQLIK 327
+G G L L L+ + V L+ + ETSIA +++ +++GS GDSQL++
Sbjct: 323 VGSRDGDLFLLRLMTSSGGGTVKSLEFSKVYETSIAYSLTVCAPGHLFVGSRLGDSQLLE 382
Query: 328 LNL---------------QPDAKGSYVEV------------------------------- 341
L D + +E+
Sbjct: 383 YTLLKTTRDCAVKRLKIDNKDPAAAEIELDEDDMELYGGAIEEQQNDDDEQIDESLQFRE 442
Query: 342 LERYVNLGPIVDFCV----------VDLERQGQ-GQVVTCSGAYKDGSLRIVRNGIGINE 390
L+R N+GP+ CV VD +R+ +VT SG K+G+L + + +
Sbjct: 443 LDRLRNVGPVKSMCVGRPNYMSNDLVDAKRRDPVFDLVTASGHGKNGALCVHQRSLRPEI 502
Query: 391 QASVELQGIKGMWSLRSSTDDPFDTFLVVSFISET 425
S L+G + +W++ ++ +L+VS + T
Sbjct: 503 ITSSLLEGAEQLWAVGRKENESH-KYLIVSRVRST 536
>sp|A2R919|CFT1_ASPNC Protein cft1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=cft1 PE=3 SV=1
Length = 1383
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 97/438 (22%), Positives = 179/438 (40%), Gaps = 61/438 (13%)
Query: 706 IRSIPLGEHPRRICHQEQSRTFAI--CSLKNQSCAEESEMH-----------------FV 746
++ + LGE + + S + + C + E+ E+H F+
Sbjct: 942 LKRVHLGEQVDHLAYSTSSGMYVLGTCHATDFKLPEDDELHPEWRNEAISFFPSARGSFI 1001
Query: 747 RLLDDQTFE---------FISTYPLDTFEYGCSILSCSFSDDSNVY-----YCVGTAYVL 792
+L+ D + + ++ L EY +I + S N + VGTA+
Sbjct: 1002 KLVWDHHLQRQDSVILIFHLHSFSLGADEYVMAIKNISLEVSENTHERKDMIVVGTAFAR 1061
Query: 793 PEENEPTKGRILVFIV-----------EDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQ 841
E+ P++G I VF V D KL+LI ++ KGAV +L+ G+ + Q
Sbjct: 1062 -GEDIPSRGCIYVFEVVQVVPDPDHPETDRKLKLIGKEPVKGAVTALSEIGGQGFVLVAQ 1120
Query: 842 KIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAI 901
+ L++DG+ + ++ + ++GD +K + Y E +
Sbjct: 1121 GQKCMVRGLKEDGSLLPVAFMDMQCYVSVVKELKGTGMCILGDAVKGVWFAGYSEEPYKM 1180
Query: 902 EERARDYNANWMSAVEILDDDIYLG---AENNFNLFTVRKNSEGATDEERGRLEVVGEYH 958
A+D + + A E L D L A+++ N+ ++ + E RL ++H
Sbjct: 1181 SLFAKDLDYLEVCAAEFLPDGKRLFIVVADSDCNIHVLQYDPEDPKSSNGDRLLSRSKFH 1240
Query: 959 LGEFVNRFRHGSLVM----RLPDSDVG-----QIP--TVIFGTVNGVIGVIASLPHEQYL 1007
+G F + M ++ S G Q P V+ T NG +G+I +P E Y
Sbjct: 1241 MGNFASTLTLLPRTMVSSEKMVSSSDGMDIDNQSPLHQVLMTTQNGSLGLITCIPEESYR 1300
Query: 1008 FLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEIS 1067
L LQ+ L ++ GLN +R+ E + LDG+L+ ++D+S+ R EI+
Sbjct: 1301 RLSALQSQLTNTLEHPCGLNPRAFRAV--ESDGTAGRGMLDGNLLFKWIDMSKQRKTEIA 1358
Query: 1068 KTMNVSVEELCKRVEELT 1085
+ E+ +E ++
Sbjct: 1359 GRVGAREWEIKADLEAIS 1376
Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 73/348 (20%), Positives = 132/348 (37%), Gaps = 105/348 (30%)
Query: 161 LQVLDIKFLYGCAKPTIVVLYQ----------DNKDARHVKTYEVALKDKDFVEGPWSQN 210
L + + FLY +PT +LY + KD + + L+ + S +
Sbjct: 225 LHPISLAFLYEYREPTFGILYSQVATSSALLPERKDVVFYTVFTLDLEQQASTV-LLSVS 283
Query: 211 NLDNGADLLIPVPPPLCGVLIIGEETIVYC----SANAFKAIPIRPSITKAYGRVDADGS 266
L + ++ +PPP+ G L+IG +V+ NA ++ +D +
Sbjct: 284 RLPSDLFRVVALPPPVGGALLIGSNELVHIDQAGKTNAVGVNEFSRQVSSFSMTDQSDLA 343
Query: 267 RYL-------LGDHAGLLHLLVITHEK---------EKVTGLKIELL----GETSI---A 303
L LGD +G + L++ T E V+G+ + LL G TSI A
Sbjct: 344 LRLENCIVECLGDSSGDMLLVLTTGEMAIVKFKLDGRSVSGISVHLLPAHAGLTSIYSAA 403
Query: 304 STISYLDNAVVYIGSSYGDSQLI----------KLNLQ---------------------- 331
+ +++ + +++GS GDS L+ K LQ
Sbjct: 404 AASTFIGDGKIFLGSEDGDSVLLGYSYSSSSTKKHRLQAKQVIDDSADMSEEDQSDDDVY 463
Query: 332 --------PD-------------AKGSY-VEVLERYVNLGPIVDFCV-----VDLERQG- 363
PD A G Y + ++ +N+GP+ D + +LE+ G
Sbjct: 464 EDDLYSTSPDTTLTGRRPSGESSAFGLYDFRIHDKLINIGPLRDITMGKRLSTNLEKTGD 523
Query: 364 -------QGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWS 404
+ Q+V G++K G L ++ I + AS+ L+ + +W+
Sbjct: 524 RTNSTSPELQIVASQGSHKSGGLVVMAREIDPHVVASISLESVDCIWT 571
>sp|Q6BYK1|RSE1_DEBHA Pre-mRNA-splicing factor RSE1 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=RSE1 PE=3 SV=2
Length = 1256
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 133/306 (43%), Gaps = 52/306 (16%)
Query: 813 LQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTREL----QSECGHHGHI 868
L+ + + E ++ FNG+LL ++ ++LY D G R+L S + +I
Sbjct: 963 LEFVHKTELDYQPTAIIPFNGRLLVGMSNFLRLY-----DLGQRQLLRKASSNIEYLKNI 1017
Query: 869 LALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAE 928
+ L Q G IVVGD S + + Y E A D ++A+ LD D +G +
Sbjct: 1018 IRLTHQG-GSRIVVGDSSMSTTFVKYDSTENQFIPFADDIMKRQITALVTLDYDTIIGGD 1076
Query: 929 NNFNLFTVR----------------KNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLV 972
N+F R + E + RL+ + E++L + F GSLV
Sbjct: 1077 KFGNIFVSRVPETISQQSDKDWSLLRYQESYLNGSGSRLKNICEFYLQDIPTSFTKGSLV 1136
Query: 973 MRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYL-FLEKLQTNLRKVI--------KGV 1023
M G ++I+ + G +G++ L E + FL LQ LRK K
Sbjct: 1137 M-------GGKESIIYTGIQGTLGLLLPLSTENEVKFLGDLQLLLRKYFDYNFDDFDKDK 1189
Query: 1024 GGLN-----HEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELC 1078
G N H ++RS+ N KN +DGDLIE F +LS++ I +N + E+
Sbjct: 1190 NGYNLLGKDHLKFRSYYNP-----VKNVMDGDLIERFYELSQSMKIRIGTELNRTPREIE 1244
Query: 1079 KRVEEL 1084
K++ E+
Sbjct: 1245 KKISEM 1250
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 155/740 (20%), Positives = 290/740 (39%), Gaps = 93/740 (12%)
Query: 2 SIWNYVVTAHKPTNVTHSCVGNFT-SPQELNLIIAKCTRIEIHLLTPQ--GLQPMLDVPI 58
S++ Y +T P++ S VG F + + +I+A T IE+ L+ +
Sbjct: 7 SLYLYNLTIKHPSSCIASIVGQFLGNKKSQEIILANSTSIELWKADSNTGKLEKIYQQAS 66
Query: 59 YGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIGRPTDNG 118
+G I ++ R G +D++ I ++ K VL++D E + + S R T G
Sbjct: 67 FGIIQGIDKIRLVGTQKDYVVITSDSGKLVVLEFDIEKLQFVPLFQEPHSKNGLRRTSPG 126
Query: 119 QIGIIDPDCR--LIGLHLYDGLFKVIPFDNKGQLK-----EAFNIRLEELQV--LDIKF- 168
+ +DP R LIG + L + +++G+L+ E F+ LQ+ +D F
Sbjct: 127 EYLCVDPHNRAILIGAIEKNKLVYKVQSNDEGKLELSSPLETFSKHTLTLQICAMDTGFE 186
Query: 169 --LYGCAKPTIVVLYQDNKDARHVKTYEVALKDKDFVEG------PWSQNNLDNGADLLI 220
++ + QDN + + L + +G S + + LI
Sbjct: 187 NPMFAAIECDYNARQQDNGEEEDAGEASLLLNYYELDQGLNHVVKHKSNEKIPGSSSHLI 246
Query: 221 PVPPPLCGVLIIGEETIVYCSANAFK---AIPIRPS------ITKAYGRVDADGSRYLLG 271
P+P + G+L+ + TI+Y + K IPIR + + R+ + L+
Sbjct: 247 PLPDFIGGLLVCSKSTIIYAHPSKDKLYLPIPIRSNTNETLIVNHVIHRLKKNNFFILVQ 306
Query: 272 DHAGLLHLLVITHEK--EKVTGLKIELLGETSIASTISYLDNAVVYIGSSYGDS---QLI 326
G + I H++ E + + I ++ +++ + ++ + + Q
Sbjct: 307 SQLGDCFKITIDHDEVNESIENINITYFDTIPLSQSLNIFKSGFLFANVATNNKLFYQFE 366
Query: 327 KL-------NLQPDAKGSYVEVLERYVN--------------------LGPIVDFCVVDL 359
KL LQ Y + E ++ L PI D +++
Sbjct: 367 KLGDDNNNTTLQSCNFSDYNSIFELDISKRSFKVAGLENLALVDIMETLNPITDGALIET 426
Query: 360 ERQGQGQVVTCSGAYKDGS-LRIVRNGIGINEQASVELQGIK--GMWSLRSSTDDPFDTF 416
R A S L+ + +GI N S L IK + + R + D +
Sbjct: 427 LRPEVPDPFKQLTALSSHSYLKTLTHGISTNTVVSSPLP-IKPTAIHTTRIFAESANDEY 485
Query: 417 LVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTS 476
LV+S ++ L +++ + +EE F + T+ + +VQ+ S +R + T
Sbjct: 486 LVISSTLSSQTLVLSIGEVVEEVNDSQFVTNEPTINVQQVGKSSVVQIYSNGIRHIKHTM 545
Query: 477 R-----ELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIG--DGILTEVKHAQLE 529
R + +W P G S+ A+ N QV++ + Y EI D L E + +LE
Sbjct: 546 RNDTIEKKYTDWYPPAGISIIQASTNNEQVIIGLSNREICYFEIDPHDDQLVEYQE-RLE 604
Query: 530 YE--------ISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD---LNLITKEHLGG 578
IS I+ + SY A VG +D +++ SL L ++T + L
Sbjct: 605 MSGGSISALAISSSSISKLQRKSSY---AIVG-CSDETIQAISLKPHNCLEIVTLQALSA 660
Query: 579 EIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSK 638
S+ + + + + +G + ++ TG+L+D + LG++P+ L
Sbjct: 661 N--SSSIAMVPHGYSTSVHIGMENGLYVRVTIDEITGKLSDTRIQFLGSKPVQLSVIGLP 718
Query: 639 NTTH--VFAASDRPTVIYSS 656
+ A S RP + Y S
Sbjct: 719 QLQQNGLLAISSRPWIGYYS 738
>sp|Q9FGR0|CPSF1_ARATH Cleavage and polyadenylation specificity factor subunit 1
OS=Arabidopsis thaliana GN=CPSF160 PE=1 SV=2
Length = 1442
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 137/302 (45%), Gaps = 24/302 (7%)
Query: 754 FEFISTYPLDTFEYGCSI----LSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE 809
+E + P+ T E+ ++ L + + ++ VGTAYV E+ +GR+L+F
Sbjct: 1097 WETKAKIPMQTSEHALTVRVVTLLNASTGENETLLAVGTAYV-QGEDVAARGRVLLFSFG 1155
Query: 810 ---DGKLQLIAE---KETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECG 863
D ++ E +E KGA+ ++ + G LL + KI L+KW +GT
Sbjct: 1156 KNGDNSQNVVTEVYSRELKGAISAVASIQGHLLISSGPKIILHKW----NGTELNGVAFF 1211
Query: 864 HHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDD-- 921
+ + + FI++GD+ KSI L +K + + A+D+ + A E L D
Sbjct: 1212 DAPPLYVVSMNVVKSFILLGDVHKSIYFLSWKEQGSQLSLLAKDFESLDCFATEFLIDGS 1271
Query: 922 DIYLGAENNFNLFTVRKNSEGATDEERG-RLEVVGEYHLGEFVNRFRHGSLVMRLPDSDV 980
+ L + V + + +G +L E+H+G V++F L +++ S
Sbjct: 1272 TLSLAVSDEQKNIQVFYYAPKMIESWKGLKLLSRAEFHVGAHVSKF----LRLQMVSSGA 1327
Query: 981 GQIP--TVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEK 1038
+I ++FGT++G G IA L + L+ LQ L + V GLN +R F +
Sbjct: 1328 DKINRFALLFGTLDGSFGCIAPLDEVTFRRLQSLQKKLVDAVPHVAGLNPLAFRQFRSSG 1387
Query: 1039 KT 1040
K
Sbjct: 1388 KA 1389
Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 95/403 (23%), Positives = 159/403 (39%), Gaps = 108/403 (26%)
Query: 155 NIR-LEELQVLDIKFLYGCAKPTIVVLYQDNK------DARHVKTYEVALK-DKDFVEGP 206
N+R LE V D FL+G +P IV+L ++ +H AL + + P
Sbjct: 240 NLRDLEMKHVKDFVFLHGYIEPVIVILQEEEHTWAGRVSWKHHTCVLSALSINSTLKQHP 299
Query: 207 --WSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCSANAFKAIPIRPSITKAYGRVDAD 264
WS NL + A L+ VP P+ GVL++ TI Y S +A A+ + + A +
Sbjct: 300 VIWSAINLPHDAYKLLAVPSPIGGVLVLCANTIHYHSQSASCALALNNYASSADSSQELP 359
Query: 265 GSRY-----------------LLGDHAGLLHLLVITHEKEKVTGLKIELLGETSIASTIS 307
S + LL +G L LL + ++ V L + + +AS I+
Sbjct: 360 ASNFSVELDAAHGTWISNDVALLSTKSGELLLLTLIYDGRAVQRLDLSKSKASVLASDIT 419
Query: 308 YLDNAVVYIGSSYGDSQLI------------------------------KLNLQPD---- 333
+ N++ ++GS GDS L+ +L + D
Sbjct: 420 SVGNSLFFLGSRLGDSLLVQFSCRSGPAASLPGLRDEDEDIEGEGHQAKRLRMTSDTFQD 479
Query: 334 -------------------AKGSY-VEVLERYVNLGPIVDFC----------VVDLERQG 363
A+ S+ V + VN+GP+ DF + +Q
Sbjct: 480 TIGNEELSLFGSTPNNSDSAQKSFSFAVRDSLVNVGPVKDFAYGLRINADANATGVSKQS 539
Query: 364 QGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSL--------------RSST 409
++V CSG K+G+L ++R I VEL G KG+W++ ++
Sbjct: 540 NYELVCCSGHGKNGALCVLRQSIRPEMITEVELPGCKGIWTVYHKSSRGHNADSSKMAAD 599
Query: 410 DDPFDTFLVVSFISETRILAMNLEDELEE-TEIEGFCSQTQTL 451
+D + +L++S E R + + D L E TE + Q +T+
Sbjct: 600 EDEYHAYLIISL--EARTMVLETADLLTEVTESVDYYVQGRTI 640
>sp|Q2TZ19|CFT1_ASPOR Protein cft1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=cft1 PE=3 SV=1
Length = 1393
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 139/331 (41%), Gaps = 40/331 (12%)
Query: 786 VGTAYVLPEENEPTKGRILVFIV-----------EDGKLQLIAEKETKGAVYSLNAFNGK 834
VGTA+ E+ ++G + VF V D KL+L+ ++ KGAV +L+ G+
Sbjct: 1065 VGTAFARGEDIA-SRGCVYVFEVIKVVPDPKRPEMDRKLRLVGKEPVKGAVTALSEIGGQ 1123
Query: 835 LLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIY 894
+ Q + L++DG+ + H+ + ++ D +K + Y
Sbjct: 1124 GFLIVAQGQKCIVRGLKEDGSLLPVAFMDVQCHVSVVKELKGTGMCIIADAVKGLWFAGY 1183
Query: 895 KHEEGAIEERARDYNANWMSAVEILDDD---IYLGAENNFNLFTVRKNSEGATDEERGRL 951
E + A+D + + A + L D L A+++ NL ++ + E RL
Sbjct: 1184 SEEPYKMSLFAKDLDYLEVLAADFLPDGNKLFILVADSDCNLHVLQYDPEDPKSSNGDRL 1243
Query: 952 EVVGEYHLGEFVNRFRHGSLVMRLPDSDVG---------------QIP--TVIFGTVNGV 994
++H G F+ S + LP + V +IP ++ + NG
Sbjct: 1244 LSRSKFHTGNFI------STLTLLPRTSVSSEQMISDVDAMDVDIKIPRHQMLITSQNGS 1297
Query: 995 IGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIES 1054
+G++ + E Y L LQ+ L I+ GLN +R+ E + LDG L+
Sbjct: 1298 VGLVTCVSEESYRRLSALQSQLTNTIEHPCGLNPRAFRAV--ESDGTAGRGMLDGKLLFQ 1355
Query: 1055 FLDLSRTRMDEISKTMNVSVEELCKRVEELT 1085
+LD+S+ R EI+ + + E+ E ++
Sbjct: 1356 WLDMSKQRKVEIASRVGANEWEIKADFEAIS 1386
>sp|Q6FLQ6|RSE1_CANGA Pre-mRNA-splicing factor RSE1 OS=Candida glabrata (strain ATCC 2001
/ CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RSE1
PE=3 SV=1
Length = 1296
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/349 (22%), Positives = 155/349 (44%), Gaps = 58/349 (16%)
Query: 301 SIASTISYLDNAVVYIGSSYGDSQLIKLNLQP-----------DAKGSYVEVLERYVNLG 349
S +S + +N +YI S + + LN + D + + V+ ++ N+
Sbjct: 340 SNSSKLHIFNNGSMYINSQFNYDH-VYLNFESIGDNDENYDKIDNENENISVISKHTNIN 398
Query: 350 PI-VDFCVVD------LERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVEL-QGIKG 401
PI ++ C+++ + QG + + I+RN I + E S L QG+
Sbjct: 399 PIALNLCLMENMPLTFMHFQGGNRTTDSE------KVNIIRNAIPLKEYVSSPLPQGVSN 452
Query: 402 MWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIY--- 458
++++++ + +F+ ++ I+ T ++ ++ + IE + + T D +
Sbjct: 453 IFTIKTQYQ-SYHSFIFLTMINFTTVIL-----KIADDSIEQYIPASDTFKLKDDMTIHV 506
Query: 459 -----NQLVQVTSGSVRLVSSTSRELRN-----EWKSPPGYSVNVATANASQVLLATGGG 508
N ++QV R + S++ N +W P G S+ A +N SQ++LA
Sbjct: 507 ATMGDNSIIQVCKDEFRQILLDSKDEENFKMNLKWYPPAGVSILSAVSNFSQLILALSNN 566
Query: 509 HLVYLEIGDGILTEVKH-AQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD 567
+VYL++ + L E K+ +L I+ L + + +N S+I AVG +D V + SL
Sbjct: 567 EIVYLQLENNTLIEYKNRPELPDVITSLAL--LNDNTKKSEILAVGT-SDNMVNVLSLE- 622
Query: 568 LNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGH-LLNFLLNMKTG 615
I E + E +V+ A + I L L GH L+N + ++ G
Sbjct: 623 ---IVDEAISFE----TVVFQALDAIPSSLLILNQGHKLVNLHIGVEDG 664
>sp|Q1E5B0|CFT1_COCIM Protein CFT1 OS=Coccidioides immitis (strain RS) GN=CFT1 PE=3 SV=1
Length = 1387
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 84/370 (22%), Positives = 156/370 (42%), Gaps = 33/370 (8%)
Query: 746 VRLLDDQTFEFISTYPLDTFEYGCSILSCSF-----SDDSNVYYCVGTAYVLPEENEPTK 800
++LL +T+ + +Y L E + + + + + VGTA V E+ P +
Sbjct: 1015 IKLLSPRTWSVVDSYELGDAERVMCMKTINMEISEITHEMKDMLVVGTATVRGEDITP-R 1073
Query: 801 GRILVF-IVE----------DGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWM 849
G I VF I+E + KL++ A+ + KGAV +++ G+ + Q +
Sbjct: 1074 GSIYVFEIIEVAPDPDRPETNRKLKIFAKDDVKGAVTAVSGIGGQGFLIMAQGQKCMVRG 1133
Query: 850 LRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYN 909
L++DG+ + ++ L ++GD +K I Y E + +D
Sbjct: 1134 LKEDGSLLPVAFMDMQCYVKVLKELQGTGLCIMGDALKGIWFAGYSEEPYRLTLFGKDNE 1193
Query: 910 ANWMSAVEILDDD--IY-LGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRF 966
+ A + L D +Y L A+++ + + + E T + RL +H G F +
Sbjct: 1194 YLQVIAADFLPDGKRLYILVADDDCTIHVLEYDPEDPTSSKGDRLLHRSSFHTGHFTSTM 1253
Query: 967 -----RHGSLVMRLP---DSDVGQIPT---VIFGTVNGVIGVIASLPHEQYLFLEKLQTN 1015
S P D DV +P V+ + G IGV+ L + Y L LQ+
Sbjct: 1254 TLLPEHSSSPSADDPEEDDMDVDYVPKSYQVLVTSQEGSIGVVTPLTEDSYRRLSALQSQ 1313
Query: 1016 LRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVE 1075
L ++ GLN + +R+ E + +DG+L+ +LD+ R EI+ + +E
Sbjct: 1314 LVTSMEHPCGLNPKAYRAV--ESDGFGGRGIVDGNLLLRWLDMGVQRKAEIAGRVGADIE 1371
Query: 1076 ELCKRVEELT 1085
+ +E ++
Sbjct: 1372 SIRVDLETIS 1381
>sp|Q6CAH5|RSE1_YARLI Pre-mRNA-splicing factor RSE1 OS=Yarrowia lipolytica (strain CLIB 122
/ E 150) GN=RSE1 PE=3 SV=1
Length = 1143
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 156/737 (21%), Positives = 284/737 (38%), Gaps = 106/737 (14%)
Query: 402 MWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQL 461
+W++R D ++V+S+ + T L + + D + ET G TL C ++ +
Sbjct: 459 LWTMRDGAGS--DKYIVLSYANAT--LVLEIGDSVVETTSSGLTLDKPTLHC-GSVGSSY 513
Query: 462 VQVTSGSVRLVSSTSRELRNE------WKSPPGYSVNVATANASQVLLATGGGHLVYLEI 515
VQV + + ++ SRE +E W +P G V A++++ QV+L L Y E
Sbjct: 514 VQVMTDGMNVIP-MSREGSSESLPATKWTAPSG-QVICASSSSHQVVLGLTSS-LFYFED 570
Query: 516 GDGILTEVKHAQLEYEIS----CLDINPIGENPSYSQIAAVGMWTDISVRIFSL-PDLNL 570
G +E+ YE+S + + P+ S AV D +VRI S+ P+
Sbjct: 571 TPG--SELSAYDGAYELSSPPTAVAVAPVPAGRVRSPFVAVAT-DDETVRIVSVDPESMF 627
Query: 571 ITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDR--KKVSLGTQ 628
T G S+ L + + YL L +G + L+ TGE+ K V LG
Sbjct: 628 ETVAVQGLMATASSLALLSVGQVLYLHMGLANGVYVRVELDPLTGEIVGSWSKFVGLGRL 687
Query: 629 PITLRTFSSKNTT------------HVFAASDR--PTVIYSSNKKLLYS--NVNLKEVSH 672
+ T + + HV A SD PT N ++ ++ + +
Sbjct: 688 SVVPVTCGGEESILVSSRGVKTCLGHVNATSDTWVPT---GGNSAPFFALDAISGEPLDL 744
Query: 673 MCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSL 732
F++ P + L I T++ QK + L +R+ Q + T I
Sbjct: 745 AHSFHTQDCPHGVIGVAGSTLKIFTVNTAQKWTENEVKLEGTAKRLI-QHDATTLTITQN 803
Query: 733 KNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVL 792
++ + +D+ D SI F D Y+ VG +
Sbjct: 804 PDRLVS----------VDNGAVGITK----DLGGPPTSICEVMFGDGKR-YFAVGGSRDG 848
Query: 793 PEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRD 852
T G I +F L + E + +L A+NG L+A I +++LY L+
Sbjct: 849 SPGTSGTSGYISIF--SSSSLGHVHTTEVEAPPLALCAYNGLLVAGIGSQVRLYALGLKQ 906
Query: 853 DGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGA--IEERARDYNA 910
R+ Q E LA + + + + VGD+ +S+++ + E+ I D +
Sbjct: 907 V-LRKAQIELSKRVTCLAHFAGS--NRVAVGDIRQSVTVCVVLEEDSGHVIYPLVCDKIS 963
Query: 911 NWMSAVEILD-DDIYLGAE-NNFNLFTVRKNSEGATDEERGRLEVV-------GEYHLGE 961
++ + +D + + LG F + + + DE+ + + G H
Sbjct: 964 RQVTCLFFVDYETVALGDRFGGFTMLRIPSEASKLADEDHNAVHLRQLEPTLNGPAHF-- 1021
Query: 962 FVNRFRHGSLVMRLPDSDVGQIPTVI------------FGTVNGVIGVIASLPHEQYLFL 1009
RF H + + +P I GTV+ + V++ +Q L
Sbjct: 1022 ---RFDH------VASFHIEDVPVAIHMYNDYLVVCGLLGTVSAFVPVVSP---KQSRDL 1069
Query: 1010 EKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKT 1069
+ ++ + G+ G +H ++R + V K +DGD++ L + R +E+ +
Sbjct: 1070 KTIEKFVCASDPGLMGRDHGRFRGYY-----VPVKEVVDGDMLREVLVMDEKRREEVGEK 1124
Query: 1070 MNVSVEELCKRVEELTR 1086
+ VE RV + +
Sbjct: 1125 TGLGVEGAVGRVVNVMK 1141
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 411,664,824
Number of Sequences: 539616
Number of extensions: 18371975
Number of successful extensions: 40942
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 40485
Number of HSP's gapped (non-prelim): 188
length of query: 1088
length of database: 191,569,459
effective HSP length: 128
effective length of query: 960
effective length of database: 122,498,611
effective search space: 117598666560
effective search space used: 117598666560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)