Query 001387
Match_columns 1088
No_of_seqs 198 out of 758
Neff 9.3
Searched_HMMs 46136
Date Thu Mar 28 23:30:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001387.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001387hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1897 Damage-specific DNA bi 100.0 1E-185 3E-190 1558.9 117.6 1075 3-1088 1-1096(1096)
2 KOG1896 mRNA cleavage and poly 100.0 6E-139 1E-143 1197.4 100.2 1074 2-1087 1-1362(1366)
3 KOG1898 Splicing factor 3b, su 100.0 1E-134 3E-139 1147.7 82.6 1054 4-1085 2-1201(1205)
4 COG5161 SFT1 Pre-mRNA cleavage 100.0 3.4E-96 7E-101 811.7 69.7 1059 2-1083 1-1312(1319)
5 PF10433 MMS1_N: Mono-function 100.0 3.3E-60 7.2E-65 564.0 55.7 450 76-539 1-503 (504)
6 PF03178 CPSF_A: CPSF A subuni 100.0 2.8E-50 6E-55 451.9 36.7 310 743-1057 1-321 (321)
7 KOG0318 WD40 repeat stress pro 99.0 1.5E-05 3.2E-10 87.8 39.3 213 690-938 383-601 (603)
8 KOG2048 WD40 repeat protein [G 98.9 3.7E-05 8E-10 87.4 40.7 428 468-939 80-548 (691)
9 KOG0318 WD40 repeat stress pro 98.1 0.035 7.6E-07 62.1 44.0 301 500-849 293-600 (603)
10 KOG1036 Mitotic spindle checkp 98.1 0.00084 1.8E-08 69.9 21.5 258 530-839 14-293 (323)
11 PRK11028 6-phosphogluconolacto 98.0 0.027 5.9E-07 63.7 34.9 185 712-919 125-328 (330)
12 KOG0291 WD40-repeat-containing 97.9 0.087 1.9E-06 61.6 54.1 443 262-755 64-553 (893)
13 KOG1446 Histone H3 (Lys4) meth 97.9 0.034 7.3E-07 58.6 30.8 144 682-848 150-302 (311)
14 KOG0319 WD40-repeat-containing 97.9 0.048 1E-06 63.5 34.0 359 489-895 63-442 (775)
15 KOG2106 Uncharacterized conser 97.9 0.072 1.6E-06 59.3 43.3 385 491-937 203-624 (626)
16 PF03178 CPSF_A: CPSF A subuni 97.8 0.014 3E-07 65.7 28.7 193 724-938 42-264 (321)
17 PF10282 Lactonase: Lactonase, 97.8 0.045 9.8E-07 62.2 32.2 275 550-849 2-322 (345)
18 cd00200 WD40 WD40 domain, foun 97.7 0.083 1.8E-06 57.2 32.7 271 529-846 9-288 (289)
19 KOG0291 WD40-repeat-containing 97.7 0.22 4.7E-06 58.5 48.3 194 715-940 353-551 (893)
20 KOG0306 WD40-repeat-containing 97.6 0.28 6E-06 57.6 42.4 225 682-939 335-580 (888)
21 PF10282 Lactonase: Lactonase, 97.5 0.27 6E-06 55.8 39.1 296 595-917 1-344 (345)
22 cd00200 WD40 WD40 domain, foun 97.5 0.13 2.8E-06 55.7 30.5 219 684-939 23-249 (289)
23 PRK11028 6-phosphogluconolacto 97.4 0.41 8.8E-06 54.1 35.3 270 506-849 10-304 (330)
24 KOG0647 mRNA export protein (c 97.3 0.084 1.8E-06 55.3 22.7 267 529-840 27-313 (347)
25 KOG1539 WD repeat protein [Gen 97.2 0.78 1.7E-05 54.7 44.9 144 461-616 176-323 (910)
26 KOG2106 Uncharacterized conser 97.2 0.61 1.3E-05 52.3 37.4 338 550-940 215-582 (626)
27 KOG1539 WD repeat protein [Gen 97.2 0.97 2.1E-05 54.0 40.5 250 547-840 46-307 (910)
28 KOG2055 WD40 repeat protein [G 97.1 0.091 2E-06 58.0 22.2 199 582-809 216-417 (514)
29 PF02239 Cytochrom_D1: Cytochr 97.1 0.84 1.8E-05 52.1 32.5 320 466-820 15-356 (369)
30 COG2706 3-carboxymuconate cycl 97.1 0.63 1.4E-05 50.4 31.1 279 548-849 3-321 (346)
31 KOG1274 WD40 repeat protein [G 97.0 0.29 6.3E-06 58.8 26.5 73 714-809 190-262 (933)
32 KOG0310 Conserved WD40 repeat- 96.8 0.61 1.3E-05 52.2 25.4 272 530-847 27-306 (487)
33 KOG2055 WD40 repeat protein [G 96.8 0.13 2.8E-06 56.9 19.4 75 715-809 438-512 (514)
34 KOG1408 WD40 repeat protein [F 96.7 0.73 1.6E-05 53.8 25.4 72 533-613 264-356 (1080)
35 PLN00181 protein SPA1-RELATED; 96.6 0.51 1.1E-05 60.3 27.4 202 713-938 576-792 (793)
36 KOG1273 WD40 repeat protein [G 96.6 0.45 9.7E-06 50.3 20.7 142 780-939 164-322 (405)
37 TIGR03866 PQQ_ABC_repeats PQQ- 96.5 1.9 4.1E-05 47.4 32.7 255 556-848 9-278 (300)
38 KOG0285 Pleiotropic regulator 96.3 1.3 2.9E-05 47.6 22.6 262 530-847 152-437 (460)
39 KOG1036 Mitotic spindle checkp 96.3 0.69 1.5E-05 48.9 20.3 245 713-1007 14-268 (323)
40 KOG0319 WD40-repeat-containing 96.1 4.2 9.2E-05 48.2 40.0 422 469-940 86-536 (775)
41 KOG0315 G-protein beta subunit 96.1 1.4 3E-05 45.3 20.7 225 685-937 55-286 (311)
42 KOG0296 Angio-associated migra 95.9 3.2 7E-05 45.0 28.1 312 490-847 66-396 (399)
43 PF08596 Lgl_C: Lethal giant l 95.9 0.63 1.4E-05 53.3 20.2 76 530-613 87-175 (395)
44 TIGR02658 TTQ_MADH_Hv methylam 95.9 3.9 8.6E-05 45.9 30.5 62 694-763 280-342 (352)
45 KOG0283 WD40 repeat-containing 95.8 0.54 1.2E-05 56.1 19.0 110 490-612 371-482 (712)
46 KOG2048 WD40 repeat protein [G 95.8 5.8 0.00013 46.6 49.9 495 250-849 23-548 (691)
47 KOG0282 mRNA splicing factor [ 95.7 0.26 5.7E-06 54.9 14.8 213 690-940 236-463 (503)
48 KOG2110 Uncharacterized conser 95.5 4.6 0.0001 44.0 25.1 228 744-1000 68-329 (391)
49 KOG2110 Uncharacterized conser 95.5 1.2 2.7E-05 48.2 18.7 154 450-613 89-250 (391)
50 KOG0647 mRNA export protein (c 95.5 2.3 5E-05 45.0 20.0 197 713-943 28-232 (347)
51 KOG0278 Serine/threonine kinas 95.4 0.42 9.2E-06 48.8 14.1 118 703-848 175-296 (334)
52 KOG0263 Transcription initiati 95.3 0.97 2.1E-05 53.6 18.5 141 682-848 503-648 (707)
53 KOG4378 Nuclear protein COP1 [ 95.1 4.3 9.3E-05 45.7 21.6 38 780-829 261-300 (673)
54 KOG0310 Conserved WD40 repeat- 95.1 4.1 9E-05 45.9 21.6 190 715-938 113-308 (487)
55 TIGR03866 PQQ_ABC_repeats PQQ- 95.1 6.5 0.00014 43.0 31.7 236 500-763 44-290 (300)
56 KOG4378 Nuclear protein COP1 [ 94.9 1 2.2E-05 50.5 16.4 206 684-919 91-302 (673)
57 KOG0294 WD40 repeat-containing 94.9 6.4 0.00014 42.1 26.9 195 744-968 107-305 (362)
58 KOG0283 WD40 repeat-containing 94.9 1.3 2.9E-05 53.0 18.4 156 712-895 409-576 (712)
59 KOG0282 mRNA splicing factor [ 94.8 0.66 1.4E-05 51.9 14.6 219 684-936 272-502 (503)
60 KOG2111 Uncharacterized conser 94.8 6.9 0.00015 41.9 24.9 255 715-1003 8-324 (346)
61 KOG1273 WD40 repeat protein [G 94.8 1.1 2.4E-05 47.4 15.4 208 774-1019 29-250 (405)
62 PLN00181 protein SPA1-RELATED; 94.7 18 0.00039 46.3 33.3 218 690-939 504-738 (793)
63 KOG1645 RING-finger-containing 94.7 2 4.3E-05 47.3 17.5 222 549-789 208-452 (463)
64 PF00780 CNH: CNH domain; Int 94.5 8.9 0.00019 41.8 27.0 241 493-764 2-267 (275)
65 PF00780 CNH: CNH domain; Int 94.4 9.5 0.0002 41.6 25.5 221 592-849 6-255 (275)
66 KOG1407 WD40 repeat protein [F 94.3 7.8 0.00017 40.4 22.4 189 498-749 118-308 (313)
67 TIGR02658 TTQ_MADH_Hv methylam 94.1 12 0.00027 42.0 32.6 231 556-811 75-332 (352)
68 KOG2321 WD40 repeat protein [G 94.1 0.97 2.1E-05 51.7 14.0 138 500-652 148-296 (703)
69 COG2706 3-carboxymuconate cycl 93.8 12 0.00026 40.9 31.3 120 799-919 211-345 (346)
70 KOG2445 Nuclear pore complex c 93.7 2.1 4.5E-05 45.4 14.8 134 703-849 101-256 (361)
71 PTZ00420 coronin; Provisional 93.6 22 0.00047 43.0 26.8 217 713-966 75-312 (568)
72 KOG0645 WD40 repeat protein [G 93.5 11 0.00025 39.4 27.7 256 690-997 36-307 (312)
73 KOG0275 Conserved WD40 repeat- 93.3 0.68 1.5E-05 48.8 10.5 271 705-1034 204-493 (508)
74 PF11768 DUF3312: Protein of u 93.2 21 0.00046 41.7 26.9 100 703-829 250-351 (545)
75 KOG0289 mRNA splicing factor [ 93.1 18 0.00038 40.5 23.7 143 681-849 314-460 (506)
76 KOG0276 Vesicle coat complex C 93.0 23 0.0005 41.5 33.7 137 467-612 77-216 (794)
77 KOG1274 WD40 repeat protein [G 92.7 18 0.00039 44.3 22.2 193 715-939 16-218 (933)
78 PF02239 Cytochrom_D1: Cytochr 92.7 18 0.00039 41.4 22.2 202 547-766 5-216 (369)
79 KOG0640 mRNA cleavage stimulat 92.1 5.3 0.00011 42.4 14.9 214 506-733 192-417 (430)
80 PF14727 PHTB1_N: PTHB1 N-term 92.1 28 0.0006 40.2 32.0 125 478-610 228-359 (418)
81 KOG0649 WD40 repeat protein [G 91.8 3.9 8.4E-05 42.0 13.2 145 780-939 21-186 (325)
82 KOG0315 G-protein beta subunit 91.7 18 0.00039 37.5 24.1 95 507-612 60-155 (311)
83 KOG0289 mRNA splicing factor [ 91.7 26 0.00056 39.3 22.3 211 690-936 282-503 (506)
84 KOG0650 WD40 repeat nucleolar 91.7 5.4 0.00012 46.1 15.6 257 530-840 401-668 (733)
85 KOG0299 U3 snoRNP-associated p 91.7 18 0.00039 40.8 19.2 133 689-848 306-453 (479)
86 KOG0646 WD40 repeat protein [G 91.6 13 0.00029 41.8 18.2 204 707-940 76-308 (476)
87 KOG4649 PQQ (pyrrolo-quinoline 91.5 16 0.00036 38.1 17.3 104 718-849 16-121 (354)
88 KOG0278 Serine/threonine kinas 91.3 7.1 0.00015 40.3 14.5 142 458-613 155-299 (334)
89 PF14761 HPS3_N: Hermansky-Pud 91.2 19 0.00042 36.9 17.6 165 688-887 35-207 (215)
90 KOG0277 Peroxisomal targeting 91.0 22 0.00047 37.1 17.5 65 781-848 21-90 (311)
91 KOG0772 Uncharacterized conser 90.7 25 0.00054 40.3 19.2 240 715-1003 217-489 (641)
92 KOG0299 U3 snoRNP-associated p 90.7 34 0.00073 38.7 22.7 104 486-600 325-444 (479)
93 KOG0266 WD40 repeat-containing 90.7 42 0.00091 39.7 25.2 180 800-1003 224-411 (456)
94 PF14727 PHTB1_N: PTHB1 N-term 90.2 41 0.00089 38.8 27.8 146 547-697 145-316 (418)
95 KOG0316 Conserved WD40 repeat- 90.0 25 0.00055 36.2 21.1 242 466-733 38-291 (307)
96 PRK11138 outer membrane biogen 89.8 44 0.00096 38.6 29.3 110 496-619 67-184 (394)
97 KOG0650 WD40 repeat nucleolar 89.6 6.6 0.00014 45.5 13.9 183 690-895 421-637 (733)
98 KOG0646 WD40 repeat protein [G 89.3 21 0.00046 40.3 17.2 203 781-1010 93-316 (476)
99 KOG3881 Uncharacterized conser 89.1 2.4 5.3E-05 46.4 9.8 91 743-848 225-319 (412)
100 KOG2321 WD40 repeat protein [G 88.9 31 0.00067 40.1 18.5 206 593-831 63-280 (703)
101 KOG0316 Conserved WD40 repeat- 88.9 21 0.00046 36.7 15.5 146 444-611 151-300 (307)
102 KOG0294 WD40 repeat-containing 88.9 37 0.00081 36.6 22.6 114 489-612 44-158 (362)
103 TIGR03300 assembly_YfgL outer 88.8 50 0.0011 37.9 31.0 104 496-617 63-167 (377)
104 PTZ00421 coronin; Provisional 88.8 59 0.0013 38.7 29.8 77 529-612 75-157 (493)
105 KOG1587 Cytoplasmic dynein int 88.6 42 0.00091 40.2 20.6 80 527-612 240-324 (555)
106 KOG2111 Uncharacterized conser 88.6 39 0.00085 36.5 26.1 120 488-614 181-325 (346)
107 KOG0306 WD40-repeat-containing 88.0 70 0.0015 38.6 41.6 118 813-937 497-620 (888)
108 PF13360 PQQ_2: PQQ-like domai 88.0 38 0.00083 35.6 23.5 171 744-936 3-188 (238)
109 KOG0288 WD40 repeat protein Ti 87.7 4.8 0.0001 44.5 10.9 104 705-829 334-438 (459)
110 KOG0266 WD40 repeat-containing 87.7 66 0.0014 38.0 26.0 242 530-810 160-410 (456)
111 KOG0313 Microtubule binding pr 87.3 52 0.0011 36.4 22.2 67 547-616 115-182 (423)
112 KOG0273 Beta-transducin family 87.1 61 0.0013 36.9 26.9 244 529-829 235-500 (524)
113 PF04053 Coatomer_WDAD: Coatom 87.0 63 0.0014 37.8 20.5 170 629-843 35-217 (443)
114 KOG0284 Polyadenylation factor 86.8 13 0.00028 41.2 13.5 250 593-891 108-376 (464)
115 KOG2096 WD40 repeat protein [G 86.3 53 0.0011 35.5 17.1 52 119-170 232-288 (420)
116 PRK11138 outer membrane biogen 85.4 78 0.0017 36.6 30.0 126 467-609 266-392 (394)
117 KOG0279 G protein beta subunit 85.2 55 0.0012 34.7 24.5 135 468-613 86-224 (315)
118 KOG1897 Damage-specific DNA bi 85.0 1.2E+02 0.0025 38.2 58.4 369 451-897 551-944 (1096)
119 KOG0305 Anaphase promoting com 84.4 91 0.002 36.6 25.0 252 498-789 188-451 (484)
120 KOG0640 mRNA cleavage stimulat 84.0 15 0.00033 39.1 12.0 178 713-915 217-404 (430)
121 PF12894 Apc4_WD40: Anaphase-p 83.8 3.1 6.7E-05 31.4 5.2 39 521-566 3-41 (47)
122 KOG2919 Guanine nucleotide-bin 82.4 51 0.0011 35.6 15.1 223 687-940 67-328 (406)
123 PF14783 BBS2_Mid: Ciliary BBS 82.3 28 0.00062 31.7 11.6 66 768-847 2-69 (111)
124 KOG1517 Guanine nucleotide bin 82.2 1.5E+02 0.0033 37.5 23.0 224 714-967 1066-1311(1387)
125 KOG0268 Sof1-like rRNA process 82.1 42 0.00091 36.8 14.5 70 530-611 273-345 (433)
126 KOG0271 Notchless-like WD40 re 82.1 89 0.0019 34.7 28.1 102 714-842 369-472 (480)
127 PF10433 MMS1_N: Mono-function 81.8 1.3E+02 0.0027 36.3 45.5 324 499-849 1-388 (504)
128 KOG1034 Transcriptional repres 81.6 19 0.00041 38.9 11.6 111 772-895 95-211 (385)
129 KOG0305 Anaphase promoting com 81.4 1.2E+02 0.0026 35.7 22.5 210 712-941 217-463 (484)
130 KOG0302 Ribosome Assembly prot 81.3 47 0.001 36.7 14.7 136 691-849 234-378 (440)
131 KOG0290 Conserved WD40 repeat- 80.5 38 0.00083 36.0 13.2 154 774-939 52-227 (364)
132 KOG4441 Proteins containing BT 80.2 47 0.001 40.4 16.4 182 725-927 334-529 (571)
133 KOG1538 Uncharacterized conser 80.1 1.4E+02 0.0029 35.7 18.5 106 822-938 176-292 (1081)
134 KOG3881 Uncharacterized conser 80.0 25 0.00054 38.9 12.2 130 822-963 105-249 (412)
135 PF12234 Rav1p_C: RAVE protein 79.2 34 0.00073 41.5 14.3 118 708-847 24-154 (631)
136 PHA02713 hypothetical protein; 79.0 54 0.0012 39.9 16.5 150 781-940 352-532 (557)
137 KOG0296 Angio-associated migra 78.6 82 0.0018 34.7 15.4 161 816-1002 58-221 (399)
138 PTZ00421 coronin; Provisional 78.3 1.6E+02 0.0034 35.2 27.6 113 490-611 77-198 (493)
139 KOG4441 Proteins containing BT 78.0 76 0.0016 38.7 17.2 174 742-931 299-486 (571)
140 PF08728 CRT10: CRT10; InterP 77.2 38 0.00083 41.5 14.0 153 29-187 49-239 (717)
141 KOG0273 Beta-transducin family 76.8 1.4E+02 0.0031 34.1 23.0 271 528-847 177-480 (524)
142 PF14779 BBS1: Ciliary BBSome 76.3 19 0.00042 38.2 10.0 77 529-608 176-255 (257)
143 PF06433 Me-amine-dh_H: Methyl 76.3 1.3E+02 0.0029 33.4 25.5 115 684-812 197-323 (342)
144 KOG0772 Uncharacterized conser 75.3 1.7E+02 0.0036 34.0 20.4 91 690-789 385-477 (641)
145 KOG1517 Guanine nucleotide bin 75.2 2.4E+02 0.0053 35.9 22.5 142 684-849 1178-1333(1387)
146 PF08596 Lgl_C: Lethal giant l 75.2 1.6E+02 0.0035 33.9 18.9 107 722-848 95-242 (395)
147 KOG0270 WD40 repeat-containing 75.0 1.6E+02 0.0034 33.5 18.3 40 760-809 168-210 (463)
148 PHA03098 kelch-like protein; P 74.7 85 0.0018 38.0 16.9 134 781-924 343-491 (534)
149 KOG2114 Vacuolar assembly/sort 74.6 2.3E+02 0.0049 35.2 23.4 211 490-714 27-256 (933)
150 PHA02713 hypothetical protein; 74.5 1.1E+02 0.0024 37.1 17.6 153 781-942 304-489 (557)
151 KOG1188 WD40 repeat protein [G 74.3 74 0.0016 34.8 13.6 144 462-612 45-197 (376)
152 KOG0649 WD40 repeat protein [G 74.3 1.2E+02 0.0025 31.7 22.4 48 311-358 22-72 (325)
153 TIGR03300 assembly_YfgL outer 74.3 1.7E+02 0.0036 33.5 30.5 133 468-619 76-214 (377)
154 PF08450 SGL: SMP-30/Gluconola 73.9 1.3E+02 0.0027 32.0 27.5 207 684-919 13-233 (246)
155 KOG0272 U4/U6 small nuclear ri 73.6 1.6E+02 0.0036 33.2 18.0 82 681-772 354-437 (459)
156 KOG0279 G protein beta subunit 72.2 1.4E+02 0.0031 31.8 27.3 134 467-611 172-313 (315)
157 KOG0280 Uncharacterized conser 72.1 1.2E+02 0.0026 32.7 14.2 156 781-939 24-196 (339)
158 KOG0277 Peroxisomal targeting 71.9 1.4E+02 0.003 31.5 20.1 77 320-406 35-111 (311)
159 KOG0271 Notchless-like WD40 re 71.8 1E+02 0.0022 34.3 14.0 154 821-1002 114-277 (480)
160 KOG1896 mRNA cleavage and poly 71.2 3.2E+02 0.0069 35.5 24.6 93 802-897 1117-1215(1366)
161 KOG0263 Transcription initiati 71.2 1.5E+02 0.0033 36.1 16.5 109 451-567 530-650 (707)
162 KOG0308 Conserved WD40 repeat- 71.0 75 0.0016 37.7 13.6 177 744-939 95-285 (735)
163 PF08662 eIF2A: Eukaryotic tra 70.5 1.3E+02 0.0028 30.7 15.2 95 704-823 49-145 (194)
164 KOG0771 Prolactin regulatory e 70.0 70 0.0015 35.8 12.6 56 674-730 285-342 (398)
165 KOG1408 WD40 repeat protein [F 69.7 1.5E+02 0.0034 35.6 15.8 97 686-809 613-713 (1080)
166 PF07433 DUF1513: Protein of u 69.3 78 0.0017 34.7 12.8 116 709-841 1-119 (305)
167 KOG0321 WD40 repeat-containing 68.8 1.1E+02 0.0023 36.5 14.2 203 780-1002 63-302 (720)
168 KOG1538 Uncharacterized conser 68.6 2.6E+02 0.0057 33.5 23.5 243 18-282 13-292 (1081)
169 KOG0286 G-protein beta subunit 67.6 1.8E+02 0.004 31.3 24.5 250 246-564 91-343 (343)
170 KOG1645 RING-finger-containing 66.8 27 0.00058 38.9 8.6 110 714-848 195-314 (463)
171 KOG0771 Prolactin regulatory e 66.1 57 0.0012 36.6 11.0 75 761-849 277-354 (398)
172 KOG1188 WD40 repeat protein [G 65.9 2.1E+02 0.0046 31.4 15.6 189 414-614 40-245 (376)
173 KOG0288 WD40 repeat protein Ti 65.2 93 0.002 34.9 12.3 96 466-570 321-421 (459)
174 KOG1407 WD40 repeat protein [F 64.8 1.4E+02 0.003 31.6 12.7 143 715-892 67-216 (313)
175 KOG0642 Cell-cycle nuclear pro 64.6 1.6E+02 0.0034 34.6 14.3 235 311-567 306-562 (577)
176 KOG2096 WD40 repeat protein [G 62.9 2.3E+02 0.005 30.8 21.4 261 489-781 87-386 (420)
177 KOG0293 WD40 repeat-containing 61.0 2.9E+02 0.0062 31.2 16.9 194 712-940 269-471 (519)
178 PTZ00420 coronin; Provisional 60.0 3.9E+02 0.0085 32.5 31.3 75 489-572 126-203 (568)
179 KOG1240 Protein kinase contain 60.0 3.8E+02 0.0083 34.9 17.5 120 487-613 1097-1227(1431)
180 KOG2394 WD40 protein DMR-N9 [G 59.7 3.5E+02 0.0075 31.8 17.8 89 822-919 290-383 (636)
181 PF11768 DUF3312: Protein of u 59.5 3.7E+02 0.0079 32.0 30.7 186 714-915 147-349 (545)
182 KOG0295 WD40 repeat-containing 58.1 3E+02 0.0065 30.6 21.7 248 506-788 128-395 (406)
183 COG5276 Uncharacterized conser 57.6 2.8E+02 0.006 30.1 13.6 132 804-940 64-200 (370)
184 PF14779 BBS1: Ciliary BBSome 57.2 30 0.00065 36.8 6.8 70 769-847 18-95 (257)
185 PF00400 WD40: WD domain, G-be 57.0 22 0.00048 24.9 4.3 30 528-564 10-39 (39)
186 KOG4547 WD40 repeat-containing 57.0 3.3E+02 0.0072 32.1 15.4 106 780-902 69-177 (541)
187 PF00325 Crp: Bacterial regula 56.8 16 0.00034 25.1 3.0 25 1062-1086 4-28 (32)
188 PF13360 PQQ_2: PQQ-like domai 56.7 2.5E+02 0.0055 29.2 24.2 171 744-939 46-230 (238)
189 KOG1587 Cytoplasmic dynein int 56.2 4.4E+02 0.0095 31.9 20.3 156 767-940 346-517 (555)
190 PF15390 DUF4613: Domain of un 55.6 3E+02 0.0065 32.8 14.7 71 780-863 123-195 (671)
191 KOG0269 WD40 repeat-containing 54.8 46 0.001 40.2 8.4 114 713-849 134-250 (839)
192 PF08553 VID27: VID27 cytoplas 54.2 5.5E+02 0.012 32.4 19.5 96 459-564 494-604 (794)
193 KOG3914 WD repeat protein WDR4 52.0 2.4E+02 0.0051 31.7 12.7 155 769-940 61-224 (390)
194 KOG0293 WD40 repeat-containing 49.9 4.3E+02 0.0094 29.9 17.2 197 399-611 224-425 (519)
195 PF14655 RAB3GAP2_N: Rab3 GTPa 48.4 1.7E+02 0.0036 33.9 11.6 40 760-809 51-97 (415)
196 KOG3617 WD40 and TPR repeat-co 48.1 51 0.0011 40.2 7.3 119 759-896 8-132 (1416)
197 KOG0270 WD40 repeat-containing 47.9 3.1E+02 0.0068 31.2 12.9 97 507-612 265-361 (463)
198 PF14781 BBS2_N: Ciliary BBSom 47.1 1.6E+02 0.0034 28.0 9.0 95 500-599 12-114 (136)
199 KOG1446 Histone H3 (Lys4) meth 46.5 4.2E+02 0.0092 28.9 28.5 258 485-772 11-282 (311)
200 KOG3621 WD40 repeat-containing 46.0 45 0.00098 39.9 6.5 104 780-896 44-155 (726)
201 KOG0274 Cdc4 and related F-box 45.5 6.3E+02 0.014 30.5 19.3 171 744-940 228-401 (537)
202 KOG0321 WD40 repeat-containing 45.1 62 0.0013 38.3 7.3 123 482-612 48-176 (720)
203 PF10168 Nup88: Nuclear pore c 45.0 7.3E+02 0.016 31.2 22.1 137 53-196 8-179 (717)
204 PF08553 VID27: VID27 cytoplas 44.6 75 0.0016 39.8 8.5 86 265-358 542-628 (794)
205 PHA03098 kelch-like protein; P 44.3 2.4E+02 0.0053 34.0 13.2 136 781-925 295-442 (534)
206 KOG2919 Guanine nucleotide-bin 44.2 3.5E+02 0.0076 29.7 12.0 110 774-896 213-328 (406)
207 KOG1332 Vesicle coat complex C 44.0 3.9E+02 0.0085 28.2 11.9 110 498-613 23-136 (299)
208 KOG0643 Translation initiation 41.4 4.7E+02 0.01 27.9 26.1 264 716-1032 14-296 (327)
209 KOG0269 WD40 repeat-containing 41.1 6.5E+02 0.014 31.1 14.8 164 546-725 99-276 (839)
210 KOG0276 Vesicle coat complex C 40.7 7.3E+02 0.016 29.9 37.8 112 301-433 184-300 (794)
211 PF04762 IKI3: IKI3 family; I 40.5 9.6E+02 0.021 31.3 51.0 89 479-577 62-160 (928)
212 KOG2066 Vacuolar assembly/sort 39.9 1.5E+02 0.0033 36.3 9.7 166 532-728 42-221 (846)
213 PF02978 SRP_SPB: Signal pepti 39.8 42 0.00091 30.4 4.1 29 1059-1087 72-100 (104)
214 PF15390 DUF4613: Domain of un 39.4 3.8E+02 0.0083 32.0 12.4 75 704-790 328-406 (671)
215 KOG1524 WD40 repeat-containing 38.4 7.3E+02 0.016 29.3 21.7 161 423-610 115-285 (737)
216 PF08728 CRT10: CRT10; InterP 36.9 94 0.002 38.2 7.6 63 877-939 177-246 (717)
217 KOG0284 Polyadenylation factor 36.9 6.8E+02 0.015 28.4 13.4 69 491-567 267-338 (464)
218 KOG4227 WD40 repeat protein [G 36.9 6.4E+02 0.014 28.2 15.5 31 911-941 294-324 (609)
219 COG1654 BirA Biotin operon rep 35.7 45 0.00098 28.4 3.4 27 1060-1086 19-45 (79)
220 KOG0295 WD40 repeat-containing 35.6 6.7E+02 0.015 28.0 15.2 72 491-571 294-369 (406)
221 KOG0275 Conserved WD40 repeat- 35.0 6.3E+02 0.014 27.5 16.4 72 532-613 216-295 (508)
222 KOG0274 Cdc4 and related F-box 34.9 8.9E+02 0.019 29.3 22.9 234 714-1009 251-490 (537)
223 PF04053 Coatomer_WDAD: Coatom 34.8 8.1E+02 0.018 28.8 17.5 138 117-285 34-175 (443)
224 KOG0281 Beta-TrCP (transducin 34.6 4.5E+02 0.0097 29.0 11.1 252 549-848 209-476 (499)
225 KOG1445 Tumor-specific antigen 34.5 3.2E+02 0.007 32.6 10.7 189 28-235 639-833 (1012)
226 KOG3679 Predicted coiled-coil 33.8 1.6E+02 0.0034 32.3 7.7 75 623-698 194-272 (802)
227 PF06977 SdiA-regulated: SdiA- 33.5 6.2E+02 0.014 27.0 21.1 190 527-730 19-239 (248)
228 PHA02790 Kelch-like protein; P 32.7 6.4E+02 0.014 30.0 13.9 137 781-927 272-414 (480)
229 PF08662 eIF2A: Eukaryotic tra 32.7 5.5E+02 0.012 26.1 14.3 131 781-924 17-157 (194)
230 KOG3621 WD40 repeat-containing 32.0 2.2E+02 0.0047 34.5 9.1 109 828-940 41-155 (726)
231 PF12894 Apc4_WD40: Anaphase-p 31.9 1E+02 0.0022 23.3 4.4 40 50-93 2-41 (47)
232 PF06977 SdiA-regulated: SdiA- 31.4 1.3E+02 0.0029 32.1 6.9 60 265-328 183-247 (248)
233 TIGR02276 beta_rpt_yvtn 40-res 30.7 1.8E+02 0.004 20.5 5.7 30 690-721 13-42 (42)
234 PF12234 Rav1p_C: RAVE protein 30.2 5.8E+02 0.013 31.3 12.6 107 497-609 40-155 (631)
235 KOG4328 WD40 protein [Function 29.6 9.3E+02 0.02 27.8 20.6 286 529-848 186-492 (498)
236 PF14761 HPS3_N: Hermansky-Pud 29.3 1.4E+02 0.003 30.8 6.3 55 30-88 29-84 (215)
237 PHA02790 Kelch-like protein; P 29.2 1E+03 0.022 28.2 17.2 129 781-927 319-453 (480)
238 KOG0301 Phospholipase A2-activ 28.9 5.1E+02 0.011 31.4 11.3 114 821-943 178-292 (745)
239 PF13404 HTH_AsnC-type: AsnC-t 28.7 56 0.0012 24.0 2.5 39 1047-1085 4-42 (42)
240 PF10395 Utp8: Utp8 family; I 28.0 8E+02 0.017 30.3 13.1 112 720-848 35-158 (670)
241 KOG1445 Tumor-specific antigen 27.8 5.1E+02 0.011 31.0 10.9 66 498-569 640-711 (1012)
242 KOG1034 Transcriptional repres 27.8 8.6E+02 0.019 26.9 18.0 216 683-923 105-366 (385)
243 KOG1332 Vesicle coat complex C 27.6 3.6E+02 0.0079 28.4 8.7 105 831-941 22-136 (299)
244 KOG2394 WD40 protein DMR-N9 [G 27.3 9.4E+02 0.02 28.4 12.7 59 714-788 292-351 (636)
245 PF05096 Glu_cyclase_2: Glutam 27.0 8.2E+02 0.018 26.4 18.5 89 742-847 66-155 (264)
246 PF07569 Hira: TUP1-like enhan 27.0 1.9E+02 0.0041 30.2 7.1 78 526-612 9-96 (219)
247 KOG0308 Conserved WD40 repeat- 26.5 1.2E+03 0.027 28.2 14.2 155 820-1001 115-284 (735)
248 PF13412 HTH_24: Winged helix- 26.5 76 0.0016 23.8 3.0 38 1049-1086 6-43 (48)
249 KOG2063 Vacuolar assembly/sort 26.4 1.2E+03 0.025 30.0 14.6 23 310-332 25-47 (877)
250 PF12341 DUF3639: Protein of u 25.6 1.9E+02 0.0041 19.1 4.1 25 488-512 1-25 (27)
251 KOG1063 RNA polymerase II elon 24.7 1.1E+03 0.025 28.7 13.1 136 468-611 553-699 (764)
252 KOG0322 G-protein beta subunit 24.6 8.9E+02 0.019 26.0 14.3 156 767-937 152-321 (323)
253 PF13545 HTH_Crp_2: Crp-like h 24.0 84 0.0018 26.2 3.2 25 1062-1086 30-54 (76)
254 PF14870 PSII_BNR: Photosynthe 23.8 1E+03 0.022 26.3 16.0 200 702-937 6-213 (302)
255 TIGR02276 beta_rpt_yvtn 40-res 23.5 2.7E+02 0.0059 19.6 5.6 38 547-586 3-40 (42)
256 PF15525 DUF4652: Domain of un 23.4 7.9E+02 0.017 24.9 10.6 92 736-835 80-175 (200)
257 PF08279 HTH_11: HTH domain; 23.3 98 0.0021 23.9 3.2 26 1061-1086 16-41 (55)
258 KOG1240 Protein kinase contain 23.1 1.9E+03 0.04 29.2 17.4 76 530-612 1196-1274(1431)
259 PF14157 YmzC: YmzC-like prote 22.3 3.1E+02 0.0067 22.1 5.5 40 913-958 21-60 (63)
260 PF09826 Beta_propel: Beta pro 22.0 1.4E+03 0.031 27.4 33.6 107 721-842 279-389 (521)
261 KOG0973 Histone transcription 21.8 8.3E+02 0.018 31.3 12.0 120 17-145 69-201 (942)
262 KOG0280 Uncharacterized conser 21.5 1.1E+03 0.023 25.8 11.9 100 501-611 88-196 (339)
263 PF13936 HTH_38: Helix-turn-he 20.9 1.6E+02 0.0035 21.7 3.7 31 1051-1082 12-42 (44)
264 KOG0264 Nucleosome remodeling 20.8 4.1E+02 0.0088 30.4 8.3 74 529-613 272-349 (422)
265 PRK12784 hypothetical protein; 20.3 4.6E+02 0.0099 22.1 6.3 52 267-319 33-84 (84)
266 PF05920 Homeobox_KN: Homeobox 20.2 1.7E+02 0.0036 21.3 3.5 28 1059-1086 12-39 (40)
No 1
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=100.00 E-value=1.2e-185 Score=1558.91 Aligned_cols=1075 Identities=63% Similarity=1.033 Sum_probs=1022.4
Q ss_pred eEEEEEEeecCCceeEEEEEEecCCCcccEEEEcCCEEEEEEeCCCCeEEEEEEEeeeeEeEEeeeccCCCCccEEEEEe
Q 001387 3 IWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIATLELFRPHGEAQDFLFIAT 82 (1088)
Q Consensus 3 ~~~y~~t~~~~tav~~av~~~f~~~~~~~Lvv~k~~~le~y~~~~~~L~~~~~~~l~~~i~~i~~~r~~~~~~d~L~v~~ 82 (1088)
+|.|++|+++||||.+|+.|||++++..+|+|||+|+||+|.++++||+.+.+.|+||+|..|+.+||++..+|+|+|.|
T Consensus 1 ~~~Y~vtaqkpT~V~~av~gnFts~e~~nlivAk~~~lei~~~~~~GLq~i~sv~ifg~I~~i~~fRp~g~~kD~LfV~t 80 (1096)
T KOG1897|consen 1 SMNYVVTAQKPTAVVTAVVGNFTSPENLNLIVAKGNRLEILLVEPNGLQPITSVPIFGTIATIALFRPPGSDKDYLFVAT 80 (1096)
T ss_pred CeeEEEEecCCceEeEEEeecccCccceeeeeeccceEEEEeeccccceeeEeeccceeEEEEEeecCCCCCcceEEEEE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCeEEEEEEeCCCCcEEEEEeeeccCCCCccCCCCCeEEECCCCCEEEEEecCCeEEEEeCCCC-----Cccccceecc
Q 001387 83 ERYKFCVLQWDAESSELITRAMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNK-----GQLKEAFNIR 157 (1088)
Q Consensus 83 ~~~~~~il~~~~~~~~~~t~s~~~~~~~~~r~~~~~~~l~vdp~~r~~~~~~~~~~l~i~p~~~~-----~~~~~~~~i~ 157 (1088)
+++++++|+||....+.+|..+++..++.+|+.++|++++|||.+|.|+++.|+|+++++|+++. +.....|++|
T Consensus 81 ~~~~~~iL~~d~~~~~vv~~a~~~v~dr~gr~s~~g~~~~VDp~~R~Igl~~yqgl~~vIp~d~~~sht~~s~l~~fn~r 160 (1096)
T KOG1897|consen 81 DSYRYFILEWDEESIQVVTRAHGDVSDRSGRPSDNGQILLVDPKGRVIGLHLYQGLFKVIPIDSDESHTGGSLLKAFNVR 160 (1096)
T ss_pred CcceEEEEEEccccceEEEEecccccccccccCCCceEEEECCCCcEEEEEeecCeEEEEEecccccccCcccccccccc
Confidence 99999999999877789999999999888999999999999999999999999999999999886 5566789999
Q ss_pred cCCceeEEEEeecCCCCcEEEEEEEecCCcceEEEEEEeccCCCeeeecccccccCCCCCEEEecCCCCCceEEEeCCeE
Q 001387 158 LEELQVLDIKFLYGCAKPTIVVLYQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETI 237 (1088)
Q Consensus 158 l~~~~i~d~~fl~~~~~p~laiL~~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~lp~~~~~liplp~~~~G~lv~~~~~i 237 (1088)
+++.+|.||+||++...|++|+||+|. ..+|+++|+++++++++.++.|+ .++..++..+||+|.|.||+||+|++.|
T Consensus 161 fdel~v~Di~fly~~s~pt~~vly~Ds-~~~Hv~~yelnl~~ke~~~~~w~-~~v~~~a~~li~VP~~~gGvlV~ge~~I 238 (1096)
T KOG1897|consen 161 FDELNVYDIKFLYGCSDPTLAVLYKDS-DGRHVKTYELNLRDKEFVKGPWS-NNVDNGASMLIPVPSPIGGVLVIGEEFI 238 (1096)
T ss_pred cCcceEEEEEEEcCCCCCceEEEEEcC-CCcEEEEEEeccchhhccccccc-cccccCCceeeecCCCCceEEEEeeeEE
Confidence 999999999999999999999999999 88999999999999999999999 8999999999999999999999999999
Q ss_pred EEEcCCceeeee---cCCceeeeeeEEecCCCEEEEEcCCcCeEEEEEEecCcEEee--EEEEEcCccccceEEEEecCC
Q 001387 238 VYCSANAFKAIP---IRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKEKVTG--LKIELLGETSIASTISYLDNA 312 (1088)
Q Consensus 238 ~y~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ll~~~~G~l~~l~l~~~~~~v~~--~~i~~~~~~~~~s~l~~l~~~ 312 (1088)
+|+++..+.+++ .+++.+.||+.++.++.+||++|++|+||++.+...++++++ |+++++|++++++||++|++|
T Consensus 239 ~Y~~~~~~~ai~p~~~~~~t~~~~~~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng 318 (1096)
T KOG1897|consen 239 VYMSGDNFVAIAPLTAEQSTIVCYGRVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG 318 (1096)
T ss_pred EEeeCCceeEecccccCCceEEEcccccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc
Confidence 999998877765 677889999999999999999999999999999988888887 899999999999999999999
Q ss_pred eEEEeeecCCeEEEEEeeCCCCCCCcEEEEeeeccCCceeeeEEeccCCCCCceEEEEeeCCCCceEEEEecCCceeEEE
Q 001387 313 VVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQA 392 (1088)
Q Consensus 313 ~lf~gS~~gds~l~~~~~~~~~~~~~~~~~~~l~n~~Pi~D~~~~~~~~~~~~~l~~~sG~g~~g~L~~lr~gi~~~~~~ 392 (1088)
+||+||++|||+|+++..++|. ++|..++++++|+|||.||++.+.+++++++|++|||++|+|+||++|+||++++++
T Consensus 319 ~lFvGS~~gdSqLi~L~~e~d~-gsy~~ilet~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A 397 (1096)
T KOG1897|consen 319 VLFVGSRFGDSQLIKLNTEPDV-GSYVVILETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELA 397 (1096)
T ss_pred eEEEeccCCceeeEEccccCCC-CchhhhhhhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceee
Confidence 9999999999999999998876 888999999999999999999999989999999999999999999999999999999
Q ss_pred eeeCCCcceEEEeecCCCCCCccEEEEEecCceEEEEecCCCceeeeeecceeccccceeeeecCCCeEEEEecCcEEEE
Q 001387 393 SVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLV 472 (1088)
Q Consensus 393 ~~~l~~v~~iw~l~~~~~~~~~~~lilS~~~~T~vl~~~~~~~~~e~~~~~f~~~~~Ti~~~~~~~~~ivQVt~~~i~l~ 472 (1088)
+.++||++++|+++..-.++++.||++||+++|++|.++++ +|+.++++|.++++||+|+.+.++.++|||+++||++
T Consensus 398 ~i~l~Gikg~w~lk~~v~~~~d~ylvlsf~~eTrvl~i~~e--~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ 475 (1096)
T KOG1897|consen 398 SIDLPGIKGMWSLKSMVDENYDNYLVLSFISETRVLNISEE--VEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLV 475 (1096)
T ss_pred EeecCCccceeEeeccccccCCcEEEEEeccceEEEEEccc--eEEeccccccccCceEEEEccCCceEEEEecccEEEE
Confidence 99999999999999766778999999999999999999864 9999999999999999999998889999999999999
Q ss_pred ecCCcceeeeeeCCCCCcEEEEEECCCEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEE
Q 001387 473 SSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAV 552 (1088)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~I~~a~~~~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~v 552 (1088)
+.+ .+.++|.+|.+..|..|+++..+++||.+++.+.|++++.+.+.+..+.+++.||+|+|++|+++++..+.+++|
T Consensus 476 ss~--~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aV 553 (1096)
T KOG1897|consen 476 SSA--GLRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAV 553 (1096)
T ss_pred cch--hhhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEE
Confidence 876 388999999998888999999999999988899999998877999999999999999999999887777889999
Q ss_pred EEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecC-ceEEEEEeCCCcEEEEEEecCCCccccceeeecCcccee
Q 001387 553 GMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEG-ISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPIT 631 (1088)
Q Consensus 553 g~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~-~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~ 631 (1088)
|+|.+-.+.+..+||+.++..+.++.+.+|||+++..+++ ..||+++++||.++.|.++..+|.+.+.|+..+|++|+.
T Consensus 554 G~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~ 633 (1096)
T KOG1897|consen 554 GLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPIS 633 (1096)
T ss_pred EeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcE
Confidence 9997777788888999998888888888999999999986 899999999999999999999999999999999999999
Q ss_pred EEEEEeCCceEEEEecCCceEEEecCCcEEEeecccccceeeeccCCCCCCCeEEEEeCCeEEEEEEcCCCCeEEEEEeC
Q 001387 632 LRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPL 711 (1088)
Q Consensus 632 l~~~~~~~~~~v~~~~~~p~~i~~~~~~~~~~~l~~~~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~~~~~~i~l 711 (1088)
|+.|.+.+.+++||++||||++|+.++++.|+|++.+.+..+|||++.++++++++++++.|.|+.+++.+++++|++|+
T Consensus 634 Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl 713 (1096)
T KOG1897|consen 634 LRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPL 713 (1096)
T ss_pred EEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecC
Confidence 99998889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCeEEEecCCCEEEEEEeecCCC----cCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEE
Q 001387 712 GEHPRRICHQEQSRTFAICSLKNQSC----AEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVG 787 (1088)
Q Consensus 712 ~~tp~~i~y~~~~~~~~v~~~~~~~~----~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VG 787 (1088)
+++||||+|++.+.+|+|+|.+.+.. +++.+.++++++|++|+++++.++|+++|.++|+++++|.++...|++||
T Consensus 714 ~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVG 793 (1096)
T KOG1897|consen 714 GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVG 793 (1096)
T ss_pred CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEE
Confidence 99999999999999999999987543 45778999999999999999999999999999999999999889999999
Q ss_pred eeeeCCCCCCCcceEEEEEEEeC-CeEEEEEEEEecCceeEeccccCeEEEEECCEEEEEEeeeccCccccccccccccc
Q 001387 788 TAYVLPEENEPTKGRILVFIVED-GKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHG 866 (1088)
Q Consensus 788 T~~~~~~e~~~~~Gri~v~~i~~-~kl~~~~~~~~~g~v~ai~~~~g~Lv~~~g~~l~v~~~~~~~~~~~~L~~~~~~~~ 866 (1088)
|++..|+|.+|..|||++|+..+ ++|+++++++++|+|++++.|||+|++|+|+++++|+|. .+++|...|....
T Consensus 794 T~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~In~~vrLye~t----~~~eLr~e~~~~~ 869 (1096)
T KOG1897|consen 794 TGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGINQSVRLYEWT----TERELRIECNISN 869 (1096)
T ss_pred EEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEecCcEEEEEEcc----ccceehhhhcccC
Confidence 99999999999999999999997 899999999999999999999999999999999999994 2367877888888
Q ss_pred ceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCceEEEEccCCcEEEEeeCCCCCCcc
Q 001387 867 HILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDE 946 (1088)
Q Consensus 867 ~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~~~~~~~~ 946 (1088)
+..+.++++.+|+|+|||+|+|+++++|+.+++.|+++|||..|+|+++++++++++++++|++||++++++|.++++++
T Consensus 870 ~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~ 949 (1096)
T KOG1897|consen 870 PIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDE 949 (1096)
T ss_pred CeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeecccccEEEEEecCCCCchh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeEEEEEEcCCccceEEeeeeeecCCCCCCCCccEEEEEcccccEEEEEecChhHHHHHHHHHHHHHhccCCCCCC
Q 001387 947 ERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGL 1026 (1088)
Q Consensus 947 ~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~~l~~t~~G~i~~l~~l~~~~~~~L~~lq~~l~~~~~~~~gl 1026 (1088)
+++.|+..+.||+|+.|++|+.+++.++.+++.....++++|||.+|+||++..++++.+.+|..||++|++.++++||+
T Consensus 950 eR~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~~~~~~vlfgTv~GsIG~i~sl~~d~~~fL~~Lq~~irk~i~s~ggl 1029 (1096)
T KOG1897|consen 950 ERQILEEVGKFHLGELVNKFRHGSLVMQLGDSMIPLEPKVLFGTVNGSIGIIVSLPQDWYDFLEELQRRIRKVIKSVGGL 1029 (1096)
T ss_pred hhhcccceeeEEeccceeeeeecceEeeccccccCCCCcEEEEEccceEEEEEecCcchhHHHHHHHHHHHHhhcccCCc
Confidence 99999999999999999999999999885555556678899999999999999999999999999999999999999999
Q ss_pred CcccccccccccccCCCCceEehHHHHHHhcCCHHHHHHHHHhcCCC-----HHHHHHHHHHHhccC
Q 001387 1027 NHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVS-----VEELCKRVEELTRLH 1088 (1088)
Q Consensus 1027 ~~~~~R~~~~~~~~~~~~~~iDGdll~~fl~l~~~~q~~i~~~~~~~-----~~~i~~~l~~l~~~~ 1088 (1088)
+|..||+++.+.+..|++|||||||+|+|++|+++.+++|++++..+ ++||.+.+|||+|||
T Consensus 1030 sH~~yrsf~~e~~~~P~~gfIDGDLiEsfl~l~~~~~~~i~~~~~~~~~~~s~~el~k~vEel~rlh 1096 (1096)
T KOG1897|consen 1030 SHMDYRSFEFEKRTSPVKGFIDGDLIESFLDLSRSKMREIVRGLEHTESLASVQELLKIVEELTRLH 1096 (1096)
T ss_pred chhhHhhhhcccccCCCcCcccchHHHhhhccCHHHHHHHHhhcccccccCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999765 999999999999999
No 2
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=6.1e-139 Score=1197.37 Aligned_cols=1074 Identities=22% Similarity=0.348 Sum_probs=870.8
Q ss_pred ceEEEEEEeecCCceeEEEEEEecCCCcccEEEEcCCEEEEEEeCC-----------C-------CeEEEEEEEeeeeEe
Q 001387 2 SIWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTP-----------Q-------GLQPMLDVPIYGRIA 63 (1088)
Q Consensus 2 ~~~~y~~t~~~~tav~~av~~~f~~~~~~~Lvv~k~~~le~y~~~~-----------~-------~L~~~~~~~l~~~i~ 63 (1088)
|.+.|- +.++||+|++|+.|+|+.....+|||+++|.|++|+++. + +|++++++.+||+|+
T Consensus 1 m~~vyk-q~h~~T~ve~s~ag~Ft~~~~~nlvV~~~N~L~vyri~~~~e~~t~~~~~~~~~~~~~~LeLv~~~~l~GnV~ 79 (1366)
T KOG1896|consen 1 MFAVYK-QEHDPTVVENSSAGLFTNNRTENLVVAGTNILRVYRISRDAEALTKNDPGDMGKAHRKKLELVAEFKLFGNVT 79 (1366)
T ss_pred Ccchhh-hccCchhhccceeeeEecCCCcceEEecccEEEEEEeccchhhccccCccccccccceEEEEEEEEEeeccee
Confidence 344454 688999999999999999999999999999999999975 1 399999999999999
Q ss_pred EEeeeccCCCCccEEEEEeCcCeEEEEEEeCCCCcEEEEEeeeccCCCCc----cCCCCCeEEECCCCCEEEEEecCCeE
Q 001387 64 TLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIGR----PTDNGQIGIIDPDCRLIGLHLYDGLF 139 (1088)
Q Consensus 64 ~i~~~r~~~~~~d~L~v~~~~~~~~il~~~~~~~~~~t~s~~~~~~~~~r----~~~~~~~l~vdp~~r~~~~~~~~~~l 139 (1088)
+|++++..+..+|.|+++|++||+++++||+.+++|+|+|+|+||++.-+ ....++.++|||++||+++..|+..+
T Consensus 80 si~~~~~~gs~rD~LlL~f~~AKiSvlefD~~t~sl~TlSLHyfE~~~~~~~~~~~~~~p~vrvDPdsrCa~llvyg~~m 159 (1366)
T KOG1896|consen 80 SIAKLPLKGSNRDALLLLFKDAKISVLEFDPQTNSLRTLSLHYFEGPEFRKGLVGRAKIPTVRVDPDSRCALLLVYGLRM 159 (1366)
T ss_pred eEEEeecCCCCcceEEEEeccceEEEEEecCCccceeeeeeEEeccccccccccccccCceEEECCCCCeEEEEEecceE
Confidence 99999999999999999999999999999999999999999999987533 23346789999999999999999999
Q ss_pred EEEeCCCCCccc----------------cceecc---cCC--ceeEEEEeecCCCCcEEEEEEEecCCcc----------
Q 001387 140 KVIPFDNKGQLK----------------EAFNIR---LEE--LQVLDIKFLYGCAKPTIVVLYQDNKDAR---------- 188 (1088)
Q Consensus 140 ~i~p~~~~~~~~----------------~~~~i~---l~~--~~i~d~~fl~~~~~p~laiL~~~~~~~~---------- 188 (1088)
+++|++..+.+. .+|.+. +++ .||+|++||+||.+||+|+||++.+.|.
T Consensus 160 ~iLpf~~~e~~~~~~~~~~~~~~ss~~~pSyvi~~reLdeki~niiD~qFLhgY~ePTl~ILyep~~tw~grv~~r~dt~ 239 (1366)
T KOG1896|consen 160 AILPFRVNEHLDDEELFPSGFSKSSFTAPSYVIALRELDEKIKNIIDFQFLHGYYEPTLAILYEPEQTWAGRVILRKDTC 239 (1366)
T ss_pred EEeeccccccccccccccccccccccccceeEEEhhhhhhhhccceeEEeecCcccceEEEEecccccccceEEEecCcE
Confidence 999997643221 234333 333 6899999999999999999999998773
Q ss_pred eEEEEEEeccCCCeeeecccccccCCCCCEEEecCCCCCceEEEeCCeEEEEcCCc-eeeeecCCce-------------
Q 001387 189 HVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCSANA-FKAIPIRPSI------------- 254 (1088)
Q Consensus 189 ~l~~y~~~~~~~~~~~~~~~~~~lp~~~~~liplp~~~~G~lv~~~~~i~y~~~~~-~~~~~~~~~~------------- 254 (1088)
.+...+++++.+ -++.+|+..+||.|++...++|.|+||+||++.|.++|.+++. ..++++|...
T Consensus 240 ~~vaisLni~q~-~hpVI~sv~sLP~D~~~~~~vp~piGgvLv~~~n~~iy~nqsv~~~gv~LNs~a~~~t~fpl~~qs~ 318 (1366)
T KOG1896|consen 240 VLVAISLNITQK-VHPVIWSVLSLPFDCYQATAVPTPIGGVLVFTVNNLIYLNQSVSPYGVALNSYASKYTAFPLIPQSG 318 (1366)
T ss_pred EEEEEEcCcccc-ccceEeeeccCChhhhhceeecccCccEEEEeeeeEEEEccCCCceeEEecchhhcccCCccccccc
Confidence 122234444422 3457899999999999999999999999999999999999987 3566666421
Q ss_pred ----eeeeeEEecCCCEEEEEcCCcCeEEEEEEec-CcEEeeEEEEEcCccccceEEEEecCCeEEEeeecCCeEEEEEe
Q 001387 255 ----TKAYGRVDADGSRYLLGDHAGLLHLLVITHE-KEKVTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLN 329 (1088)
Q Consensus 255 ----~~~~~~~~~~~~~~ll~~~~G~l~~l~l~~~-~~~v~~~~i~~~~~~~~~s~l~~l~~~~lf~gS~~gds~l~~~~ 329 (1088)
..|......+.+.++++..+|++|+|.+..| ++.|..+++.........+|++...++++|+||+.|||.|+++.
T Consensus 319 v~i~ld~a~~t~i~~dk~vis~~~Gd~y~Ltl~~D~~r~V~~~~f~k~~asvl~t~~v~~~n~llFlGSrlgnSlll~~s 398 (1366)
T KOG1896|consen 319 VRIELDCANATWISNDKCVISLKNGDLYLLTLILDIGRSVQLLHFDKFKASVLATSIVGHGNNLLFLGSRLGNSLLLRFS 398 (1366)
T ss_pred eEEEEeeccceeecCCeEEEecCCCcEEEEEEEeccccchhhhhhhhhhcccceeeeeccCCccEEEEecCCCEEEEEeh
Confidence 1121111234678999999999999999999 67787777766655667789999999999999999999999998
Q ss_pred eCC------------C---------------------C-----------C--C-C-------c-EEEEeeeccCCceeee
Q 001387 330 LQP------------D---------------------A-----------K--G-S-------Y-VEVLERYVNLGPIVDF 354 (1088)
Q Consensus 330 ~~~------------~---------------------~-----------~--~-~-------~-~~~~~~l~n~~Pi~D~ 354 (1088)
... | + . + . | ++++|+++|+|||.||
T Consensus 399 ~~~~~~~e~~~re~~d~~~~~~~~~~~d~~~d~~~~d~~~~~~~~~g~~~~~g~~a~~t~~~f~fevcDsL~NIGPi~~~ 478 (1366)
T KOG1896|consen 399 ELLQRASEGVRREEGDTESDGYSKKRVDDTQDVRRDDEKSAELFEAGSEENYGSGAQETVQPFSFEVCDSLPNIGPITDF 478 (1366)
T ss_pred hccccCCccccccccCCcCCcchhhcccchhhhhhhhhhccchhhccccccCCcccceeeeeeEEeehhccccccccccc
Confidence 521 0 0 0 0 0 2 7999999999999999
Q ss_pred EEeccCC----------CC-CceEEEEeeCCCCceEEEEecCCceeEEEeeeCCCcceEEEeecCC-----CCCCccEEE
Q 001387 355 CVVDLER----------QG-QGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSST-----DDPFDTFLV 418 (1088)
Q Consensus 355 ~~~~~~~----------~~-~~~l~~~sG~g~~g~L~~lr~gi~~~~~~~~~l~~v~~iw~l~~~~-----~~~~~~~li 418 (1088)
+++.... ++ .-+||+|+|.|++|+|+++|+.|+|++..+++++|+.++|++.... .+..|.|++
T Consensus 479 avG~~~~~~~~~~gl~~~~~~~elV~~sGhgkngaL~V~r~sI~P~i~t~fel~Gc~~iWtV~~~~~~~~~~~~~h~~li 558 (1366)
T KOG1896|consen 479 AVGKRSSASEAVEGLSPHNKCLELVATSGHGKNGALSVIRRSIRPEIATEFELPGCVDIWTVFIKGRKREEDNTQHLYLI 558 (1366)
T ss_pred eeccccchhhhccCCCCCCCeEEEEEeccCCCCcceEEEeecccceeeEEEEecCeeeEEEEEEeccccccccCcceEEE
Confidence 9976431 12 2689999999999999999999999999999999999999997532 123478999
Q ss_pred EEecCceEEEEecCCCceeeeeecceeccccceeeeecCCC-eEEEEecCcEEEEecCCcceeeeeeCCCCCcEEEEEEC
Q 001387 419 VSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYN-QLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATAN 497 (1088)
Q Consensus 419 lS~~~~T~vl~~~~~~~~~e~~~~~f~~~~~Ti~~~~~~~~-~ivQVt~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~ 497 (1088)
+|..++|+||+.+ +++.|++.++|..+.+||++|+++++ ++|||||+++|+++.+. ..++....+.+..++.+++.
T Consensus 559 lS~e~~t~il~tg--e~~~Ev~~s~f~~~~~Tl~~gnlg~~rriVQVtp~~~rllDg~~-r~lq~i~fd~~~~vv~~sv~ 635 (1366)
T KOG1896|consen 559 LSTESRTMILETG--EELLEVSGSGFTRDGPTLFAGNLGNERRIVQVTPSGLRLLDGDL-RMLQRIPFDSGAIVVQTSVA 635 (1366)
T ss_pred eecccchhhhhcc--chhhhcccceeEeccceEEEEecCCceEEEEEccceeEEecCcc-hheeEeccccCCcEEEEecc
Confidence 9999999999765 46999999999999999999999876 99999999999999865 56777777777788888887
Q ss_pred CCEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeEEEEe----------------------------------C-CCCC
Q 001387 498 ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDI----------------------------------N-PIGE 542 (1088)
Q Consensus 498 ~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~----------------------------------~-~~~~ 542 (1088)
+.++++...++.+.+|+++.+........++...+.+++. . .+.+
T Consensus 636 dpyv~v~~~~g~i~~~~l~~~s~rl~~~~~~s~~~~sv~~~~dlsg~f~~~s~l~~k~~~~~gr~~~~~~~~~~~~kv~~ 715 (1366)
T KOG1896|consen 636 DPYVAVRSSEGRITLYDLEEKSHRLALHDPMSFKVVSVSLPADLSGMFTTLSDLSLKGNEANGRSSEAEGLQSLPCKVDD 715 (1366)
T ss_pred CceEEEEEcCCceEEEEeccccchhhccCcccceeEEEechhhhccceEEEeeecccCcccccccccccccccCCccccC
Confidence 7777777778888888876431111100011111111100 0 0000
Q ss_pred CC----CCccEEEEEEecCCEEEEEECCCCCceEEecCC-C---------CcCc------ee-----EEeeee-----cC
Q 001387 543 NP----SYSQIAAVGMWTDISVRIFSLPDLNLITKEHLG-G---------EIIP------RS-----VLLCAF-----EG 592 (1088)
Q Consensus 543 ~~----~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~-~---------~~~p------~s-----i~~~~~-----~~ 592 (1088)
.. ...++.++....+|.+++|++|++..++.-... . ...| ++ +.+.++ ..
T Consensus 716 ~egg~~~~~~~~~~~~~e~g~leiy~~pd~~lVf~v~~f~~~~~~L~~~~~~~~~~~~~s~~~~l~q~~~~~L~~e~~~~ 795 (1366)
T KOG1896|consen 716 EEGGSPEQEPYWCVFVTESGTLEIYALPDFDLVFEVDMFDTGNRVLMDSRLRGPTTNKESEDLELKQLFVNPLGSEIVFK 795 (1366)
T ss_pred CCCCCcccCceEEEEEcCCCceEEEccCCcceEEEeeccCCCcceEEeecccCccccccccchHHHHhhccccchhhhcc
Confidence 00 011144444455999999999998877642110 0 0001 11 112222 24
Q ss_pred ceEEEEEeCCCcEEEEEEec--CCCc--ccccee----------------ee----------cCccceeEEEE-EeCCce
Q 001387 593 ISYLLCALGDGHLLNFLLNM--KTGE--LTDRKK----------------VS----------LGTQPITLRTF-SSKNTT 641 (1088)
Q Consensus 593 ~~~L~vgl~~G~l~~y~~~~--~~~~--l~~~~~----------------~~----------lG~~pv~l~~~-~~~~~~ 641 (1088)
+++|+.-+.+|.++.|+..+ ..+. +.+++. .. .+..-.++++| .+++++
T Consensus 796 e~~L~lv~~~~eil~Ykaf~~~~~~~~~~~f~kvp~~~~~~~~~p~~~~~~~~~~~~e~~~~~~~~~~~m~~f~~i~ghs 875 (1366)
T KOG1896|consen 796 EPHLFLVVSDNEILIYKAFPQLSQGNLKVFFKKVPHNLNIRTDKPHFLCKKREGGGAEEGASVSVIVQRMTYFEDIGGHS 875 (1366)
T ss_pred CCceEEEEeCceEEEEeeccccCccchhhhhhhCCHhhcccccCCcccchhhccccccccccccceeeeEEeeccccCee
Confidence 68999999999999999876 2221 111110 00 11122367778 568899
Q ss_pred EEEEecCCceEEEe-cCCcEEEeeccc-ccceeeeccCCCCCCCeEEEEe-CCeEEEEEEcCC----CCeEEEEEeCCCc
Q 001387 642 HVFAASDRPTVIYS-SNKKLLYSNVNL-KEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDI----QKLHIRSIPLGEH 714 (1088)
Q Consensus 642 ~v~~~~~~p~~i~~-~~~~~~~~~l~~-~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~----~~~~~~~i~l~~t 714 (1088)
++|++|.+|+|+.. -++.+.++++-. .++.+++||++..||++++|++ ++.++||.++.. ++|+.|+|||+.|
T Consensus 876 gvfv~Gs~P~~il~t~rg~lr~h~~~gngpv~sfapfhnvn~p~gfiyvd~~~~l~i~~lp~~~~Ydn~wPvkkIpl~~T 955 (1366)
T KOG1896|consen 876 GVFVTGSKPYLILLTFRGVLRFHPVFGNGPVGSFAPFHNVNCPRGFIYVDRQGELVICVLPEALSYDNKWPVKKIPLRKT 955 (1366)
T ss_pred EEEEecCCceEEEEEcccccceeeeecCCcceeeeeeeccCCCcceEEECCCceEEEEEcchhcccCCCCcccccccccc
Confidence 99999999966654 577777777764 6899999999999999999987 789999999875 5899999999999
Q ss_pred cCeEEEecCCCEEEEEEeecC------CCcCc-------------ceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEE
Q 001387 715 PRRICHQEQSRTFAICSLKNQ------SCAEE-------------SEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCS 775 (1088)
Q Consensus 715 p~~i~y~~~~~~~~v~~~~~~------~~~~~-------------~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~ 775 (1088)
|+.++||++.+.|+|.++.+. .++++ ..++.++|++|.+|++++.++|+++|++++|+.+.
T Consensus 956 ~~~vvYh~e~~vy~v~t~~~~~~~~~~~d~~e~~~~~de~~~~p~~~~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~ 1035 (1366)
T KOG1896|consen 956 PHQVVYHYEKKVYAVITSTPVPYERLGEDGEEEVISRDENVIHPEGEQFSIQLISPESWEVIDKIEFQENEHVLHMKYVI 1035 (1366)
T ss_pred hhheeeeccceEEEEEEeccceeeecccccccccccccccccccccccceeEEecCCccccccccccCccceeeEEEEEE
Confidence 999999999999999987541 11111 25799999999999999999999999999999999
Q ss_pred EcCC-----CceEEEEEeeeeCCCCCCCcceEEEEEEEe-----------CCeEEEEEEEEecCceeEeccccCeEEEEE
Q 001387 776 FSDD-----SNVYYCVGTAYVLPEENEPTKGRILVFIVE-----------DGKLQLIAEKETKGAVYSLNAFNGKLLAAI 839 (1088)
Q Consensus 776 ~~~~-----~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~-----------~~kl~~~~~~~~~g~v~ai~~~~g~Lv~~~ 839 (1088)
+..+ .++|++|||++.. |||.+++||+++|++. +.|+|++++++++|+|.++|.++|+|+.|.
T Consensus 1036 L~~~~t~~~~k~ylavGT~~~~-gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G~l~~~~ 1114 (1366)
T KOG1896|consen 1036 LDDEETTKGKKPYLAVGTAFIQ-GEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQ 1114 (1366)
T ss_pred EEecccccCCcceEEEEEeecc-cccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEeccEEEEcc
Confidence 8753 4899999999998 8999999999999998 469999999999999999999999999999
Q ss_pred CCEEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEe
Q 001387 840 NQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEIL 919 (1088)
Q Consensus 840 g~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l 919 (1088)
|+||++|+|+ ++ -.|.+++|.+.+.++.++++.+|+|++||+|+|++|++|++++.+|++++||..++.+++++||
T Consensus 1115 GqKI~v~~l~-r~---~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFL 1190 (1366)
T KOG1896|consen 1115 GQKIIVRKLD-RD---SELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFL 1190 (1366)
T ss_pred CcEEEEEEec-cC---CcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeE
Confidence 9999999994 22 3599999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCce---EEEEccCCcEEEEeeCCCCCCcccccceeEEEEEEcCCccceEEeeeeeecCCCCCCCCccEE--EEEccccc
Q 001387 920 DDDI---YLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTV--IFGTVNGV 994 (1088)
Q Consensus 920 ~~~~---~l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~~--l~~t~~G~ 994 (1088)
.++. ++++|.+|||++|.|.|+++++..|+||.++++||+|..+++|.+-.+. ..+....+.+.. ++||+||+
T Consensus 1191 Vdg~~L~flvsDa~rNi~vy~Y~Pe~~eS~~G~RLv~radfhvg~~vs~m~~lp~~--~~~e~~~~~~~~~~v~gtlDG~ 1268 (1366)
T KOG1896|consen 1191 VDGSNLSFLVSDADRNIHVYMYAPENIESLSGQRLVRRADFHVGAHVSTMFRLPCH--QNAEFGSNSPMFYEVFGTLDGG 1268 (1366)
T ss_pred EcCCeeEEEEEcCCCcEEEEEeCCCCccccCcceeeeeeeeEeccceeeeEecccc--ccchhccCCchhhhhhcccCCc
Confidence 8863 8999999999999999999999999999999999999999999874421 111111223334 48999999
Q ss_pred EEEEEecChhHHHHHHHHHHHHHhccCCCCCCCccccccccccc-ccCCCCceEehHHHHHHhcCCHHHHHHHHHhcCCC
Q 001387 995 IGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEK-KTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVS 1073 (1088)
Q Consensus 995 i~~l~~l~~~~~~~L~~lq~~l~~~~~~~~gl~~~~~R~~~~~~-~~~~~~~~iDGdll~~fl~l~~~~q~~i~~~~~~~ 1073 (1088)
+|++.|++|+.||+|..||++|...++|+|||||++||..+... ...+.+.+|||++|.+|..|+.++|.++|+++|++
T Consensus 1269 l~~~~Pl~e~~YRRL~~lQn~L~~~~~hv~GLNPr~yR~~~s~~~~~n~~r~ilDg~ll~~f~yl~~~er~elA~kiGt~ 1348 (1366)
T KOG1896|consen 1269 LGHLVPLDEKTYRRLLMLQNALMDRLPHVGGLNPRAYRLLDSSLQLSNSLRSILDGELLNRFSYLSMSEREELAHKIGTT 1348 (1366)
T ss_pred eeEEecCCHHHHHHHHHHHHHHHHhhhhhcCCCHHHhhhccchhhhcCCCcccchHhHHHHhhccchhhHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999988766 56788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 001387 1074 VEELCKRVEELTRL 1087 (1088)
Q Consensus 1074 ~~~i~~~l~~l~~~ 1087 (1088)
+.+|+++|-||.++
T Consensus 1349 ~~eIl~DLvel~~~ 1362 (1366)
T KOG1896|consen 1349 RKEILDDLVELDRL 1362 (1366)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999874
No 3
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=100.00 E-value=1.3e-134 Score=1147.71 Aligned_cols=1054 Identities=25% Similarity=0.427 Sum_probs=929.5
Q ss_pred EEEEEEeecCCceeEEEEEEecCCCcccEEEEcCCEEEEEEeCCC--CeEEEEEEEeeeeEeEEeeeccCCCCccEEEEE
Q 001387 4 WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQ--GLQPMLDVPIYGRIATLELFRPHGEAQDFLFIA 81 (1088)
Q Consensus 4 ~~y~~t~~~~tav~~av~~~f~~~~~~~Lvv~k~~~le~y~~~~~--~L~~~~~~~l~~~i~~i~~~r~~~~~~d~L~v~ 81 (1088)
|+|++|++.+|++.+|+.|+|.+++.+++++++++.|++|++++. +++.++++.+||+|++++.+|.++..+|+|+|.
T Consensus 2 ~lysltlq~~t~i~~~~~g~fs~~k~qeIv~~~~s~l~L~~~d~~~G~l~~i~~~~vFg~Irsla~~~lt~~~kD~LaV~ 81 (1205)
T KOG1898|consen 2 FLYSLTLQNQTGIVQAIYGNFSGPKAQEIVLGRGSILELYRIDENDGRLKTICRQEVFGTIRSLAAFRLTGGTKDYLAVG 81 (1205)
T ss_pred chhhhhhhcccceeeeehhhccCCchheEEEEeeeEEEEEEecCCCceEEEEEEEeehhhhhhhhccccCCCCccEEEEE
Confidence 899999999999999999999999999999999999999999976 799999999999999999999999999999999
Q ss_pred eCcCeEEEEEEeCCCCcEEEEEeeeccCCCCccCCCCCeEEECCCCCEEEEEecC--CeEEEEeCCCCCccccceecccC
Q 001387 82 TERYKFCVLQWDAESSELITRAMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYD--GLFKVIPFDNKGQLKEAFNIRLE 159 (1088)
Q Consensus 82 ~~~~~~~il~~~~~~~~~~t~s~~~~~~~~~r~~~~~~~l~vdp~~r~~~~~~~~--~~l~i~p~~~~~~~~~~~~i~l~ 159 (1088)
+++|+++|++|+.+...|+++..+.+.+.+.|...+|.|+++||.||++++++-+ .++.++.-+....+..+ .+++
T Consensus 82 SDSGri~il~y~~ek~~~~~~~qetfGks~~rrivpG~y~~idp~Gra~misave~~kLvyvlnrD~~a~ltis--Sple 159 (1205)
T KOG1898|consen 82 SDSGRISILEYNNEKNHFEKLHQETFGKSGCRRIVPGQYLAIDPKGRAVMISAVEKQKLVYVLNRDGAARLTIS--SPLE 159 (1205)
T ss_pred cCCceEEEEEechhhhccccccccccCcccceEeccccEEEEcCCccceeeehhhcCcEEEEEccchhhhceec--Cchh
Confidence 9999999999999888899999999999999999999999999999999888643 44445544444444332 2343
Q ss_pred C----ceeEEEEeec-CCCCcEEEEEEEecC-------------CcceEEEEEEeccCCCeeeecccccccCCCCCEEEe
Q 001387 160 E----LQVLDIKFLY-GCAKPTIVVLYQDNK-------------DARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIP 221 (1088)
Q Consensus 160 ~----~~i~d~~fl~-~~~~p~laiL~~~~~-------------~~~~l~~y~~~~~~~~~~~~~~~~~~lp~~~~~lip 221 (1088)
. ..+.||+.++ |+.+|+||.|..|+. ..+++.+|+++++. +++.+.|+ ..+++..+++++
T Consensus 160 ahk~~sic~~l~~Vd~gf~np~fa~LE~dy~~a~~d~tgeaa~~~~~~l~fYeldlgl-nhvvrk~s-~p~~~~~n~l~~ 237 (1205)
T KOG1898|consen 160 AHKAHSICLDLVGVDVGFENPIFAALERDYSEADNDPTGEAATMTQKVLTFYELDLGL-NHVVRKAS-EPVNHFGNFLLT 237 (1205)
T ss_pred hccCCcEEEEEEEEeccCCCceEEEEeechhhcccCchhhhhhccccceeEEEEeccc-ceeEEEcc-cccCCCceEEEE
Confidence 3 4578889885 799999999999842 23689999999996 67777788 467777899999
Q ss_pred cCCC---CCceEEEeCCeEEEEcCCc--eeeeecCC-----------ceeeeeeEEec-CCCEEEEEcCCcCeEEEEEEe
Q 001387 222 VPPP---LCGVLIIGEETIVYCSANA--FKAIPIRP-----------SITKAYGRVDA-DGSRYLLGDHAGLLHLLVITH 284 (1088)
Q Consensus 222 lp~~---~~G~lv~~~~~i~y~~~~~--~~~~~~~~-----------~~~~~~~~~~~-~~~~~ll~~~~G~l~~l~l~~ 284 (1088)
+|.. ..|++|+..|.+.|.+... ...+|++. .++.+...+.. ...++++++++||+|++++..
T Consensus 238 VP~G~D~ps~v~vc~~n~~~y~~~~d~p~~ri~~~rr~~~L~~~~~~vliv~s~~hk~k~~ff~llqt~~GD~fk~tl~~ 317 (1205)
T KOG1898|consen 238 VPGGSDGPSGVLVCAENYLLYRNLGDHPDVRIPIERRINELSDAEDGVLIVSSAEHKTKSMFFFLLQTEYGDLFKLTLEH 317 (1205)
T ss_pred ecCCCCCCcceEEecCceeeccccccCCCEEeccccccccCCccccccEEEEeecccccCCeEEEEEecCCceEEEEEec
Confidence 9975 2479999999999999763 34445421 22332222332 356889999999999999999
Q ss_pred cCcEEeeEEEEEcCccccceEEEEecCCeEEEeeecCCeEEEEEeeCC---CC--------CC----------CcEEEEe
Q 001387 285 EKEKVTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQP---DA--------KG----------SYVEVLE 343 (1088)
Q Consensus 285 ~~~~v~~~~i~~~~~~~~~s~l~~l~~~~lf~gS~~gds~l~~~~~~~---~~--------~~----------~~~~~~~ 343 (1088)
|+..+..+++.+.++.+.+..|+.+++|+||++|++||+.||++.+-+ |+ .+ +.+..++
T Consensus 318 d~d~v~el~lkYfDtvp~a~~L~I~k~GfLf~~sE~~n~~lyq~~~LG~~~~~~s~~~~~~~~~~~~f~p~~l~nL~~~~ 397 (1205)
T KOG1898|consen 318 DGDNVVELRLKYFDTVPCALQLCILKTGFLFVASEFGNHRLYQFEKLGEEDDDFSNAMTSEEGKSVFFEPRILKNLSPVS 397 (1205)
T ss_pred CCCcceeeeeehhcCCccceEEEEeccceEEEhhhccCcceeehhhcCCCccchhhhcccccCcceeccccccccccchh
Confidence 999899999999999999999999999999999999999999998632 11 01 1367889
Q ss_pred eeccCCceeeeEEeccCCCCCceEEEEeeCCCCceEEEEecCCceeEEEeeeCC-CcceEEEeecCCCCCCccEEEEEec
Q 001387 344 RYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQ-GIKGMWSLRSSTDDPFDTFLVVSFI 422 (1088)
Q Consensus 344 ~l~n~~Pi~D~~~~~~~~~~~~~l~~~sG~g~~g~L~~lr~gi~~~~~~~~~l~-~v~~iw~l~~~~~~~~~~~lilS~~ 422 (1088)
+++|+.|+.|+.+++.++++.+||++|||+|++++|+++|+|+...+++..++| +.+++|+++....+.+|+||++||.
T Consensus 398 ~i~sl~p~~d~~I~~~~ne~~~qi~~~cg~~~~sslr~lR~gle~sel~~t~lp~~~ta~WTvk~~~td~ydsyivvsF~ 477 (1205)
T KOG1898|consen 398 SVESLSPLLDISIGDDSNEDTPQIYSACGRGPRSSLRILRNGLEVSELLVTELPGNPTATWTVKKNITDVYDSYIVVSFV 477 (1205)
T ss_pred hhhccCccceeEeeccCcccchhhhhhhCcCccccchhhccccchHHHhhhccCCCCceEEEEcCccccccceEEEEEee
Confidence 999999999999999888889999999999999999999999999999999998 5789999999888899999999999
Q ss_pred CceEEEEecCCCceeeeeecceeccccceeeeecCCCeEEEEecCcEEEEecCCcceeeeeeCCCCCcEEEEEECCCEEE
Q 001387 423 SETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVL 502 (1088)
Q Consensus 423 ~~T~vl~~~~~~~~~e~~~~~f~~~~~Ti~~~~~~~~~ivQVt~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~~~~lv 502 (1088)
+.|+||++++ .+||++++||..+.+|++|+.++++.+|||++++||++-... ++++|.+|++.+|+.++++..+++
T Consensus 478 n~TlVLsIge--sveEvtdsgFls~~~Tl~~~l~Gd~slVQi~~d~iRhi~~~~--r~~ew~~P~~~~Iv~~avnr~qiV 553 (1205)
T KOG1898|consen 478 NGTLVLSIGE--SVEEVTDSGFLSTTPTLACSLMGDDSLVQIHPDGIRHIRPTK--RINEWKTPERVRIVKCAVNRRQIV 553 (1205)
T ss_pred ccEEEEEcch--hHHHhhhcccccCCceEEEEEecCCcEEEEchhhhhhccccc--ccccccCCCceEEEEEeecceEEE
Confidence 9999999984 599999999999999999999999999999999999998775 788999999999999999999999
Q ss_pred EEECCCeEEEEEEcC-cEEEEE-eeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECC-C--CCceEEecCC
Q 001387 503 LATGGGHLVYLEIGD-GILTEV-KHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLP-D--LNLITKEHLG 577 (1088)
Q Consensus 503 v~~~~~~l~~~~~~~-~~l~~~-~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~-~--l~~~~~~~l~ 577 (1088)
|++++++++||+++. |++.|. ++.+++.+++|+++.+.+.+++.+.++++|.. +++++++++. + +..+..|.++
T Consensus 554 valSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~-d~~vriisL~p~d~l~~ls~q~l~ 632 (1205)
T KOG1898|consen 554 VALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASV-DNMVRIISLDPSDCLQPLSVQGLS 632 (1205)
T ss_pred EEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeecc-ccceeEEEecCcceEEEccccccC
Confidence 999999999999976 778885 78899999999999998887778999999999 9999999994 3 3444456666
Q ss_pred CCcCceeEEeeeec-------CceEEEEEeCCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEecCCc
Q 001387 578 GEIIPRSVLLCAFE-------GISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRP 650 (1088)
Q Consensus 578 ~~~~p~si~~~~~~-------~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p 650 (1088)
..|.|+++++++ +..+|++|++||.++++.+|..+|.+.+.|++++|.+||+|.++...+.+.+++.+++|
T Consensus 633 --~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~~id~v~G~l~d~rtR~lG~~pvkLf~~~~~~~s~vL~lSsr~ 710 (1205)
T KOG1898|consen 633 --SPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRFVIDTVTGQLLDIRTRFLGLRPVKLFPISMRGQSDVLALSSRP 710 (1205)
T ss_pred --CCccceEEEEecccCCccceeEEEEecccccEEEEEEecccccceeeeheeeeccccceEEEEeecCcceeEEecCCh
Confidence 578898888764 26789999999999999999999999999999999999999999888999999999999
Q ss_pred eEEEecCCcEEEeecccccceeeeccCCCCCCCeEEEEeCCeEEEEEEcCCC-CeEEEEEeCCCccCeEEEecCCCEEEE
Q 001387 651 TVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQ-KLHIRSIPLGEHPRRICHQEQSRTFAI 729 (1088)
Q Consensus 651 ~~i~~~~~~~~~~~l~~~~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~-~~~~~~i~l~~tp~~i~y~~~~~~~~v 729 (1088)
|+.|..++++..+|++.+++..+++|.+..||.+++++..+.++|-.++... .++.+.+|++.|||++++||+++.+++
T Consensus 711 wl~y~~~~~~h~t~Isy~~l~~as~~~S~qcpeGiv~i~~n~l~i~~~~~~g~~~n~~~~~l~~tprkvv~h~es~lLii 790 (1205)
T KOG1898|consen 711 WLLYTYQQEFHLTPISYSTLEHASPFCSEQCPEGIVAISKNTLRIIALDKLGKVLNVDGFPLAYTPRKVVIHPESGLLII 790 (1205)
T ss_pred hhhhhhcceeeeecccccchhccccccccCCCcchhhhhhhhhheeeehhhcccccccccccccCcceEEEecCCCeEEE
Confidence 9999999999999999999999999999999999999999999999999884 689999999999999999999999999
Q ss_pred EEeecC------------------CCcCc------------------------------ceeEEEEEEeCCCceEEEEEE
Q 001387 730 CSLKNQ------------------SCAEE------------------------------SEMHFVRLLDDQTFEFISTYP 761 (1088)
Q Consensus 730 ~~~~~~------------------~~~~~------------------------------~~~s~l~lid~~t~~~i~~~~ 761 (1088)
++.++. ..+++ .|.++++++|+.+.+.+..++
T Consensus 791 ~~td~~~~~~~~a~~~~~~~g~v~~s~~~~e~e~g~em~~~~~~~~~~~~v~~~p~a~~~w~s~I~~~d~~s~~~~~~~~ 870 (1205)
T KOG1898|consen 791 GRTDHNATLTKDARKNQMEAGGVLESGEEKEDEMGGEMEIIGREEVLPENVYGSPRAGNGWVSSIRVFDPKSGKIICLVE 870 (1205)
T ss_pred EEecccchhhHHHhhhhhhcccccccccccchhhccchhhhccccccccccccCcccccCccceEEEEcCCCCceEEEEe
Confidence 987641 00000 156899999999999999999
Q ss_pred CCCCceEeEEEEEEEcCCCc-eEEEEEeeeeCCCC-CCCcceEEEEEEEe--CCeEEEEEEEEecCceeEeccccCeEEE
Q 001387 762 LDTFEYGCSILSCSFSDDSN-VYYCVGTAYVLPEE-NEPTKGRILVFIVE--DGKLQLIAEKETKGAVYSLNAFNGKLLA 837 (1088)
Q Consensus 762 ~~~~E~v~si~~~~~~~~~~-~~i~VGT~~~~~~e-~~~~~Gri~v~~i~--~~kl~~~~~~~~~g~v~ai~~~~g~Lv~ 837 (1088)
+..||...|++.+.|++... .+++||++....-+ ..-+.|++|.|++. +.+|+++|+++++|+|.|||+|+|++++
T Consensus 871 l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~La 950 (1205)
T KOG1898|consen 871 LGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLA 950 (1205)
T ss_pred ecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCCCccceEEeccCCEEEE
Confidence 99999999999999987444 59999998754211 12267999999998 4589999999999999999999999999
Q ss_pred EECCEEEEEEeeeccCccccccccccccc-ceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEE
Q 001387 838 AINQKIQLYKWMLRDDGTRELQSECGHHG-HILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAV 916 (1088)
Q Consensus 838 ~~g~~l~v~~~~~~~~~~~~L~~~~~~~~-~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~ 916 (1088)
|+|+.+++|++ |+|+|.++|.... +..++++++.+.+|+|||+.+|+.+++|++++++|+.+|.|+.||||+++
T Consensus 951 gvG~~l~~Ydl-----G~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~ 1025 (1205)
T KOG1898|consen 951 GVGRFLRLYDL-----GKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTAL 1025 (1205)
T ss_pred ecccEEEEeeC-----ChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEE
Confidence 99999999995 7899999988776 45788899999999999999999999999999999999999999999999
Q ss_pred EEeeCceEEEEccCCcEEEEeeCCCCCCccc------------------ccceeEEEEEEcCCccceEEeeeeeecCCCC
Q 001387 917 EILDDDIYLGAENNFNLFTVRKNSEGATDEE------------------RGRLEVVGEYHLGEFVNRFRHGSLVMRLPDS 978 (1088)
Q Consensus 917 ~~l~~~~~l~~D~~gnl~~l~~~~~~~~~~~------------------~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~ 978 (1088)
.++|+++++++|++||+++++.+++.+..-. .++.+...+|++|+.++++++.++.
T Consensus 1026 ~~lD~~tvagaDrfGNi~~vR~P~d~~e~~~edpt~~k~~~~~g~lN~~~~K~~~i~~f~v~Dvits~q~~~~i------ 1099 (1205)
T KOG1898|consen 1026 ELLDYDTVAGADRFGNIAVVRIPPDVSEEASEDPTELKIAWEQGFLNDAPQKVQLISQFFVGDVITSLQKVSSI------ 1099 (1205)
T ss_pred EEecCCceeeccccCcEEEEECCCcchhhhccCCccccceecccccccccHhhhhhhhccccCeeeeceeeeec------
Confidence 9999999999999999999999986543210 2567888999999999999886654
Q ss_pred CCCCccEEEEEcccccEEEEEec-ChhHHHHHHHHHHHHHhccCCCCCCCcccccccccccccCCCCceEehHHHHHHhc
Q 001387 979 DVGQIPTVIFGTVNGVIGVIASL-PHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLD 1057 (1088)
Q Consensus 979 ~~~~~~~~l~~t~~G~i~~l~~l-~~~~~~~L~~lq~~l~~~~~~~~gl~~~~~R~~~~~~~~~~~~~~iDGdll~~fl~ 1057 (1088)
...++.++|+|..|+||+|.|+ +++++++++.+|..|++..++++|.+|.+||++++ |.|.+|||||||+|+.
T Consensus 1100 -~~a~e~~iy~tl~GtiG~f~p~~s~~d~~Ff~~~e~~~r~e~ppl~GrDH~~yRsyy~-----Pvk~VIDGDlceqF~~ 1173 (1205)
T KOG1898|consen 1100 -PGARESLIYTTLLGTIGVFAPFLSREDVDFFQHLEMHMRKEYPPLLGRDHLEYRSYYA-----PVKKVIDGDLCEQFLR 1173 (1205)
T ss_pred -cCCcceeeeeeccccceEEeecccccchHHHHHHHHhccccCCcccCcchhhhhhhcc-----chhhcccHHHHHHHhh
Confidence 3457899999999999999999 67789999999999999999999999999999999 8999999999999999
Q ss_pred CCHHHHHHHHHhcCCCHHHHHHHHHHHh
Q 001387 1058 LSRTRMDEISKTMNVSVEELCKRVEELT 1085 (1088)
Q Consensus 1058 l~~~~q~~i~~~~~~~~~~i~~~l~~l~ 1085 (1088)
|+..+|++||++++++++||.++||++|
T Consensus 1174 L~~~~Qe~va~el~~ti~eI~kkledir 1201 (1205)
T KOG1898|consen 1174 LEENQQEEVAEELDRTIEEISKKLEDIR 1201 (1205)
T ss_pred CCHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 9999999999999999999999999987
No 4
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]
Probab=100.00 E-value=3.4e-96 Score=811.70 Aligned_cols=1059 Identities=16% Similarity=0.234 Sum_probs=800.6
Q ss_pred ceEEEEEEeecCCceeEEEEEEecCCCcccEEEEcCCEEEEEEeC-CCCeEEEEEEEeeeeEeEEeeeccCCCCccEEEE
Q 001387 2 SIWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLT-PQGLQPMLDVPIYGRIATLELFRPHGEAQDFLFI 80 (1088)
Q Consensus 2 ~~~~y~~t~~~~tav~~av~~~f~~~~~~~Lvv~k~~~le~y~~~-~~~L~~~~~~~l~~~i~~i~~~r~~~~~~d~L~v 80 (1088)
|+|.|.- ...+|++.||+.|+|++....+|+|.|+|.+++|+.. +++|.++.++.+++.+++|..+.-..+++|.|++
T Consensus 1 m~~~y~d-~~d~tv~~~~~ag~Ft~s~~~~llv~~~Nil~v~~~~~d~~l~l~de~~~~e~~t~I~~~pq~~se~~~lll 79 (1319)
T COG5161 1 MNYLYSD-ESDWTVTEGCSAGLFTPSRTCSLLVYNGNILAVRLWKYDSGLVLVDEHMLLEKVTQIEKYPQISSEQDGLLL 79 (1319)
T ss_pred Ccchhhh-hhHHHHhhccccceeeccccceEEEEeccEEEEEEeeccCCeeEchHHhhhhhhhhhhhcccccCccceEEE
Confidence 6788874 6699999999999999989999999999999999876 5689999999999999999999777788999999
Q ss_pred EeCcCeEEEEEEeCCCCcEEEEEeeeccCCCCcc----CCCCCeEEECCCCCEEEEEecCCeEEEEeCCCCCc-------
Q 001387 81 ATERYKFCVLQWDAESSELITRAMGDVSDRIGRP----TDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQ------- 149 (1088)
Q Consensus 81 ~~~~~~~~il~~~~~~~~~~t~s~~~~~~~~~r~----~~~~~~l~vdp~~r~~~~~~~~~~l~i~p~~~~~~------- 149 (1088)
+|..+|++++++|...++|.|+++|+|+..+.-. ...-.-+..||.+.| +++.++.....+||+....
T Consensus 80 ~t~~akis~lrf~sq~n~f~TislhyyeGKfkgksLvelak~stle~D~~ssc-aLlfneDi~~flpfhvnkndddev~~ 158 (1319)
T COG5161 80 LTHRAKISLLRFDSQANEFRTISLHYYEGKFKGKSLVELAKFSTLEFDIRSSC-ALLFNEDIGNFLPFHVNKNDDDEVRI 158 (1319)
T ss_pred EeccceEEEEEehhhcccceeEEEeeeccccCCchhhhhhhhhheeeccCccc-hhhhhhhhhhcccccccCCccccccc
Confidence 9999999999999999999999999999775221 112235678988876 6778888878888754210
Q ss_pred ------------------------cc--------c-----ceec---ccC--CceeEEEEeecCCCCcEEEEEEEecCCc
Q 001387 150 ------------------------LK--------E-----AFNI---RLE--ELQVLDIKFLYGCAKPTIVVLYQDNKDA 187 (1088)
Q Consensus 150 ------------------------~~--------~-----~~~i---~l~--~~~i~d~~fl~~~~~p~laiL~~~~~~~ 187 (1088)
+. . ++.+ .+. ..+|+|+.||++|..||+|+||++...|
T Consensus 159 d~D~~~~~~~~~h~~i~psqgtntfnkrkrt~~~~kfsaPs~Vl~~seld~~ikniiD~~FL~ny~~PTvallY~Pkl~~ 238 (1319)
T COG5161 159 DVDLGMFQMSKRHFSIFPSQGTNTFNKRKRTLFPGKFSAPSKVLKFSELDGKIKNIIDFVFLENYSIPTVALLYDPKLSL 238 (1319)
T ss_pred cccccHHHHHHHHhhcCCCCCccccchhhhhhcCCcccCceeEEEehhhhccccccEEEEeeccCCCceEEEEecccccc
Confidence 00 0 1111 122 3699999999999999999999988665
Q ss_pred c----------eEEEEEEeccCCCeeeecccccccCCCCCEEEecCCCCCceEEEeCCeEEEEcCCc-eeeeecCCc---
Q 001387 188 R----------HVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCSANA-FKAIPIRPS--- 253 (1088)
Q Consensus 188 ~----------~l~~y~~~~~~~~~~~~~~~~~~lp~~~~~liplp~~~~G~lv~~~~~i~y~~~~~-~~~~~~~~~--- 253 (1088)
. .-..+.++++-.... .+-....+|.|-+..+|.| .|.|++|.|.++|++..+ ..++|+|..
T Consensus 239 ~~~~ti~k~p~~~~v~Tldl~~~~sa-VI~~~~~lP~d~~~~v~~p---~Gall~g~neli~idstg~~~~I~lNs~~~k 314 (1319)
T COG5161 239 PRKYTILKNPYNAIVFTLDLGAGRSA-VIDEFLVLPRDFRVTVAGP---VGALLFGSNELILIDSTGSSYTIPLNSMSEK 314 (1319)
T ss_pred cceeEeecCceeEEEEEEecCcchhh-hhHhHhcCCceEEEEEecc---cceEEEecccEEEEecCCcEEEeechhhHHH
Confidence 3 122356666532222 2223456899999999988 389999999999999877 456777631
Q ss_pred -------------eeeeee------EEe---cCCCEEEEEcCCcCeEEEEEEecCcEEeeEEEEEcC-------ccccce
Q 001387 254 -------------ITKAYG------RVD---ADGSRYLLGDHAGLLHLLVITHEKEKVTGLKIELLG-------ETSIAS 304 (1088)
Q Consensus 254 -------------~~~~~~------~~~---~~~~~~ll~~~~G~l~~l~l~~~~~~v~~~~i~~~~-------~~~~~s 304 (1088)
-+.|.. |+. .....+++++-+|+.|+|.+..||+.+.++.+..+. ..+.++
T Consensus 315 ~~~~~~v~d~s~~d~n~~~~gttsIwipsSK~~~etl~l~dl~g~~yyl~~~~dgk~iigfdi~~L~~e~dllk~~s~~~ 394 (1319)
T COG5161 315 YGGNKIVEDISLSDVNCFSRGTTSIWIPSSKCLIETLFLGDLNGDRYYLRISMDGKRIIGFDIASLEFEGDLLKKGSAVS 394 (1319)
T ss_pred hcCCceEeecccceeeEeecCceeeeccCcccccceEEEEecCCCEEEEEEEeccceeeccceeeeeeeccccccCCCCe
Confidence 111111 111 112457899999999999999999998886665542 468899
Q ss_pred EEEEecCCeEEEeeecCCeEEEEEeeCC------------------CC------------------------CCCc-EEE
Q 001387 305 TISYLDNAVVYIGSSYGDSQLIKLNLQP------------------DA------------------------KGSY-VEV 341 (1088)
Q Consensus 305 ~l~~l~~~~lf~gS~~gds~l~~~~~~~------------------~~------------------------~~~~-~~~ 341 (1088)
|+..+++..+|.|+..+||.+++|.... |+ .++| +++
T Consensus 395 Cv~~~n~~l~f~g~g~~ns~vlr~~~l~~tiEtR~~eG~~~l~g~nDeEmdD~y~apEn~l~~n~~~~v~~~~~p~d~el 474 (1319)
T COG5161 395 CVGHVNNLLFFGGVGDSNSRVLRIKSLLPTIETRASEGVGPLEGGNDEEMDDEYSAPENKLFGNKEQEVRRQDEPYDAEL 474 (1319)
T ss_pred eEEEcCceEEEEEecCCceEEEEecccCCchhhhhhcCCCcccCCChhhhhhhhcccccccccCcccceeeccCcchhHH
Confidence 9999999999999999999999998520 00 1233 678
Q ss_pred EeeeccCCceeeeEEeccC--------CCCCceEEEEeeCCCCceEEEEecCCceeEEEeeeCCCcceEEEeecCCC---
Q 001387 342 LERYVNLGPIVDFCVVDLE--------RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTD--- 410 (1088)
Q Consensus 342 ~~~l~n~~Pi~D~~~~~~~--------~~~~~~l~~~sG~g~~g~L~~lr~gi~~~~~~~~~l~~v~~iw~l~~~~~--- 410 (1088)
++.+.|.|||.||++++.+ +.+.-++|+.+|.+..|+|.+++..+.|++...+.+.++..+|+++.+..
T Consensus 475 ~~~l~n~gpitdfavgkv~v~kglP~pN~g~l~lV~t~G~ds~~~l~V~~ts~~P~I~~~~~fi~~e~vw~~kI~g~lr~ 554 (1319)
T COG5161 475 FNALSNAGPITDFAVGKVDVEKGLPIPNIGLLNLVVTKGSDSEAALAVEGTSLEPCICTVSSFIPLEIVWSQKIRGYLRC 554 (1319)
T ss_pred hhhhccCCcccceeeeeccceecCCCCCccceeeEEeccCCCcceEEEEeccccceeeehccccchhheeehhccceehh
Confidence 9999999999999998754 23567899999999999999999999999999999999999999986531
Q ss_pred CCCccEEEEEecCceEEEEecCCCceeeeeecceeccccceeeeecCC-CeEEEEecCcEEEEecCCcceeeeeeCCCCC
Q 001387 411 DPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIY-NQLVQVTSGSVRLVSSTSRELRNEWKSPPGY 489 (1088)
Q Consensus 411 ~~~~~~lilS~~~~T~vl~~~~~~~~~e~~~~~f~~~~~Ti~~~~~~~-~~ivQVt~~~i~l~~~~~~~~~~~~~~~~~~ 489 (1088)
..--.|.++|...+|.||..++ ++.+.....|..+..|++++.++. +++|||||+.++++|.+. +.+....... +
T Consensus 555 ~~~~~~~~ls~~s~S~If~~~e--~f~l~~~g~~~rd~~Tl~~~~fgee~rvVQvtp~~l~~yD~~l-R~l~~~~F~~-~ 630 (1319)
T COG5161 555 SRALDFYILSRVSDSRIFRWSE--EFLLEVSGEYTRDVNTLLFVEFGEENRVVQVTPSYLLRYDQDL-RMLGRVEFAS-R 630 (1319)
T ss_pred cceeeEEEeecccccceeeccc--cceeeecceeeccccEEEeeeccCcceEEEecchHhhhhcccc-eeeeeEeece-e
Confidence 1124688999999999998775 466666688999999999999986 499999999999999775 4555555433 2
Q ss_pred cEEEEEEC-CCEEEEEECCCeEEEEEEcC--cEEEEEeecc-CC-ceeEEEEeCCC--------CCC-CCCccEEEEEEe
Q 001387 490 SVNVATAN-ASQVLLATGGGHLVYLEIGD--GILTEVKHAQ-LE-YEISCLDINPI--------GEN-PSYSQIAAVGMW 555 (1088)
Q Consensus 490 ~I~~a~~~-~~~lvv~~~~~~l~~~~~~~--~~l~~~~~~~-l~-~~is~l~~~~~--------~~~-~~~~~~~~vg~w 555 (1088)
.|.+.++. +..+++.. ++.+..|+.+. .++..+...+ +. .....+-+... +.. .+....+..++.
T Consensus 631 ~V~~~Sv~Dp~ilvv~~-~g~i~~f~~~ekn~rL~k~dl~~~l~d~k~~s~v~~dsN~~g~f~ig~~~Sq~e~~l~~~~~ 709 (1319)
T COG5161 631 AVEARSVRDPLILVVRD-SGKILTFYDREKNMRLFKIDLVTCLADAKNKSFVLSDSNSLGIFDIGKRISQLEPCLVKGLP 709 (1319)
T ss_pred eeEEEeccCCEEEEEEe-cCceEEEEehhhhchhccCChHHHHHhhhhheEeccCcccccceecccchhhhchhhhhcCc
Confidence 46677755 55555555 44554555543 1222111000 00 00111101000 000 011122222222
Q ss_pred cCCEEEEEECCCCCceEE---------------ecCCCCc--Cc--eeEEeeeec---CceEEEEEeCCCcEEEEEEecC
Q 001387 556 TDISVRIFSLPDLNLITK---------------EHLGGEI--IP--RSVLLCAFE---GISYLLCALGDGHLLNFLLNMK 613 (1088)
Q Consensus 556 ~~~~i~i~~l~~l~~~~~---------------~~l~~~~--~p--~si~~~~~~---~~~~L~vgl~~G~l~~y~~~~~ 613 (1088)
.+..+....-+....+.. .++..+. .| ....++.++ .++||+..+..|+++.|+-.+.
T Consensus 710 ~~~q~~~~~s~~~D~~~e~dg~dQlte~~~~~tynl~d~~f~lpsi~~~mVa~lg~D~keeyLf~~s~~~EI~~yk~~l~ 789 (1319)
T COG5161 710 YAIQFSPEASPAMDLAGEEDGDDQLTEISMSLTYNLIDMLFRLPSIGNYMVAYLGLDLKEEYLFDNSLSSEIVFYKTHLP 789 (1319)
T ss_pred ccceeccccCcchhhccccccchhhhhHHHHHHHhhhhhhccChhhhhhhhHhhcccccchheehhhcCceEEEEeeccc
Confidence 121111111111111111 1111111 22 122334333 4689999999999999997653
Q ss_pred CCc---ccccee-eecCccc-------------eeEEEEEeCCceEEEEecCCceEEEecC-CcEEEeecccccceeeec
Q 001387 614 TGE---LTDRKK-VSLGTQP-------------ITLRTFSSKNTTHVFAASDRPTVIYSSN-KKLLYSNVNLKEVSHMCP 675 (1088)
Q Consensus 614 ~~~---l~~~~~-~~lG~~p-------------v~l~~~~~~~~~~v~~~~~~p~~i~~~~-~~~~~~~l~~~~i~~~~~ 675 (1088)
... +.-.|. ..+-..| +.+...+..|++.+|++|..|+++.+.. ..-.+.+...-++.+++|
T Consensus 790 r~~~f~~nvTRndlAitGaPdna~~Ka~sSV~ri~m~f~~~vghs~~fvTg~~pfl~~s~~~s~~k~f~~gNIPlvsv~p 869 (1319)
T COG5161 790 RHVSFNLNVTRNDLAITGAPDNADIKAFSSVGRIDMVFIKAVGHSFMFVTGKGPFLCRSRYTSSSKAFHRGNIPLVSVIP 869 (1319)
T ss_pred ccchhhhhcchhhhhccCCCcchhhhhcccccceeEEEeeccCeEEEEEcCCccEEEEEeccCCcceeecCCCceeeeee
Confidence 221 000000 0011111 2333335668999999999999987642 222233444457889999
Q ss_pred cCCCCCCCeEEEEe-CCeEEEEEEcCC-----CCeEEEEEeCCCccCeEEEecCCCEEEEEEeecC---CCcCc------
Q 001387 676 FNSAAFPDSLAIAK-EGELTIGTIDDI-----QKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQ---SCAEE------ 740 (1088)
Q Consensus 676 f~~~~~~~~l~~~~-~~~l~i~~l~~~-----~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~---~~~~~------ 740 (1088)
|+. .+.++++ ...+++++.... ++|+.+++|++.|-.+++||+....|+|.++.+. +.+|+
T Consensus 870 ~s~----rgy~~Vd~~~~vr~~~~~~dn~y~gnK~p~k~~~~~Ktlqklvyh~~~~~~~Vgsc~~~~f~~~gEdgE~~i~ 945 (1319)
T COG5161 870 LSK----RGYLMVDNVLGVRASQYVFDNGYVGNKNPVKRTPKHKTLQKLVYHCAGRYMVVGSCEEAGFSPKGEDGESGIP 945 (1319)
T ss_pred ccc----ccEEEEecccceeEEEEEeccceecccCceeeccccccccceeeeccceEEEEEeeeecCccccCCCCCccCc
Confidence 986 5777776 577889888665 5899999999999999999999999999887752 22222
Q ss_pred ---------ceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcC-----CCceEEEEEeeeeCCCCCCCcceEEEEE
Q 001387 741 ---------SEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSD-----DSNVYYCVGTAYVLPEENEPTKGRILVF 806 (1088)
Q Consensus 741 ---------~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~-----~~~~~i~VGT~~~~~~e~~~~~Gri~v~ 806 (1088)
..++.+.|++|++|+++|+|+|+++|.+.+++.+.+.. .+++||+|||++.. +||.|.+||+++|
T Consensus 946 ~D~Nvphaeg~~~~vdL~spksw~vID~yef~~ne~v~~i~~~~l~~~~~tk~k~pyi~vgtt~~~-gED~p~rG~~hv~ 1024 (1319)
T COG5161 946 VDTNVPHAEGYRFYVDLYSPKSWEVIDTYEFDENEYVFHIKYLILDDMQGTKGKSPYILVGTTFIE-GEDRPARGRLHVL 1024 (1319)
T ss_pred cCCCCcccccceeeEEEecCcceeEeeeeecccceeeeeeeeeeeeccccccCCCceEEEEeeecc-cCccCCcCceEEE
Confidence 25899999999999999999999999999999988764 35899999999987 8999999999999
Q ss_pred EEe-----------CCeEEEEEEEEecCceeEeccccCeEEEEECCEEEEEEeeeccCcccccccccccccceEEEEEEE
Q 001387 807 IVE-----------DGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQT 875 (1088)
Q Consensus 807 ~i~-----------~~kl~~~~~~~~~g~v~ai~~~~g~Lv~~~g~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~ 875 (1088)
+|. +.|||++..++++|.|..+|+++|+++.|+|+|+++++++ ++++ +.++++++.+++..++++
T Consensus 1025 eII~VVP~pg~P~t~~KLK~~~~Ee~kGTV~~vcEV~G~~~~~qgqKV~Vr~i~-~~~~---iipV~F~Dl~~ft~s~k~ 1100 (1319)
T COG5161 1025 EIISVVPSPGSPFTDCKLKVLGIEETKGTVVRVCEVRGKIALCQGQKVMVRKID-RSSG---IIPVGFYDLHIFTSSIKV 1100 (1319)
T ss_pred EEEEecCCCCCCcccceeeEEehhhcccEEEEEEEEccEEEeccCcEEEEEEec-ccCC---cceeEEEeeeeeeehhhh
Confidence 998 5699999999999999999999999999999999999985 3344 899999999999999999
Q ss_pred eCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCc---eEEEEccCCcEEEEeeCCCCCCccccccee
Q 001387 876 RGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDD---IYLGAENNFNLFTVRKNSEGATDEERGRLE 952 (1088)
Q Consensus 876 ~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~---~~l~~D~~gnl~~l~~~~~~~~~~~~~~L~ 952 (1088)
.+|++++||++++++|+.|+++|.+|+.+++....+.+++.+||..+ .++++|.+||++++.|+|+++.+..|+||.
T Consensus 1101 ~~Nlll~gD~~qg~~F~gF~~ePyRm~l~s~s~~~~n~~s~efLv~G~~lyf~~~Da~gnih~l~Y~P~np~S~sG~RLV 1180 (1319)
T COG5161 1101 VKNLLLAGDIYQGLSFFGFQSEPYRMHLISSSEPLRNATSTEFLVTGNELYFLCCDAKGNIHGLTYSPNNPISMSGARLV 1180 (1319)
T ss_pred hhheeehhhhhcCcEEEEecCCcEEEEEecCCchhhcchhhHhhccCCeeEEEEEcCCCCEEEEecCCCCccccCcceeE
Confidence 99999999999999999999999999999999999999999999875 378999999999999999999999999999
Q ss_pred EEEEEEcCCccceEEeeeeeecCCC--CCCCCccEEEEEcccccEEEEEecChhHHHHHHHHHHHHHhccCCCCCCCccc
Q 001387 953 VVGEYHLGEFVNRFRHGSLVMRLPD--SDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQ 1030 (1088)
Q Consensus 953 ~~~~f~lg~~v~~~~~~~l~~~~~~--~~~~~~~~~l~~t~~G~i~~l~~l~~~~~~~L~~lq~~l~~~~~~~~gl~~~~ 1030 (1088)
.++.||+|+..++|.- .|+..+ .......+.+++-+||++.++.||+++.|++|..+|+++...+.++|||||++
T Consensus 1181 ~rssFtlhs~~~~m~l---lPrn~efG~~~~~~f~~v~~~sdG~l~~vvpisd~~YrrL~~IQ~~i~~r~~~vgGLNpr~ 1257 (1319)
T COG5161 1181 KRSSFTLHSAEIKMNL---LPRNSEFGAGFKKNFIMVYSRSDGMLIHVVPISDAHYRRLLGIQTAIMARLKSVGGLNPRD 1257 (1319)
T ss_pred eeccccccchhhhhhh---ccchhhhCCCCCCceeEEEEccCCcEEEEeccCHHHHHHHHHHHHHHHHHHHhhcCCChhh
Confidence 9999999999988753 222211 12335568999999999999999999999999999999999999999999999
Q ss_pred cccccccc-ccCCCCceEehHHHHHHhcCCHHHHHHHHHhcCCC-HHHHHHHHHH
Q 001387 1031 WRSFNNEK-KTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVS-VEELCKRVEE 1083 (1088)
Q Consensus 1031 ~R~~~~~~-~~~~~~~~iDGdll~~fl~l~~~~q~~i~~~~~~~-~~~i~~~l~~ 1083 (1088)
||-..... ...+.+.++|+.+|..|-.|+.+.|+++|+++|+. ..+++++|+-
T Consensus 1258 yRL~~d~~~~~~s~r~~ld~~ii~~F~y~~~~~r~sva~kaGr~~~~e~~D~i~~ 1312 (1319)
T COG5161 1258 YRLNSDIHLHSLSLRSPLDLHIINLFSYFDMSTRESVASKAGRIDRKEISDMIAS 1312 (1319)
T ss_pred hhhccCHHHhcCCcccchhhhhhhhhhhcchhhhhHHHhhcCCchHHHHHHHHHH
Confidence 99765433 34577899999999999999999999999999974 4566655543
No 5
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=100.00 E-value=3.3e-60 Score=563.99 Aligned_cols=450 Identities=40% Similarity=0.669 Sum_probs=334.7
Q ss_pred cEEEEEeCcCeEEEEEEeCCCCcEEE---EEeeeccCCCCccCCCCCeEEECCCCCEEEEEecCCeEEEEeCCC----CC
Q 001387 76 DFLFIATERYKFCVLQWDAESSELIT---RAMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDN----KG 148 (1088)
Q Consensus 76 d~L~v~~~~~~~~il~~~~~~~~~~t---~s~~~~~~~~~r~~~~~~~l~vdp~~r~~~~~~~~~~l~i~p~~~----~~ 148 (1088)
|+|+|++++|++++++|+++++++.+ +....+.+++.|+..+|.+++|||+|||+++++|++.+.|+|+++ ..
T Consensus 1 D~L~v~tdsg~l~~l~~~~~~~~~~~~~v~~~~~~~~~~~r~~~~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~ 80 (504)
T PF10433_consen 1 DSLVVTTDSGKLSILEYDPSTHGFFKEFVHQWEPLSKSGSRLSQPGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDI 80 (504)
T ss_dssp -EEEEEETTTEEEEEEEEEETTEE-E-EEEEEEE---SSSEB-TT--EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-
T ss_pred CEEEEEECCCCEEEEEEECCCCccceeeEEEeEecCCCCCChhcCCcEEEECCcCCEEEEEecCCeEEEEEecccccccc
Confidence 79999999999999999997777643 223567778889999999999999999999999999999999988 11
Q ss_pred ccccceeccc-CCceeEEEEeec---CCCCcEEEEEEEecCCcceEEEEEEeccCC-Ceeee-------cccccccCCCC
Q 001387 149 QLKEAFNIRL-EELQVLDIKFLY---GCAKPTIVVLYQDNKDARHVKTYEVALKDK-DFVEG-------PWSQNNLDNGA 216 (1088)
Q Consensus 149 ~~~~~~~i~l-~~~~i~d~~fl~---~~~~p~laiL~~~~~~~~~l~~y~~~~~~~-~~~~~-------~~~~~~lp~~~ 216 (1088)
.....++.++ ++.+|+|||||+ ++++|+||+||.+...+.++.+|+|+..+. +.+.. .+....+ +
T Consensus 81 ~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~---p 157 (504)
T PF10433_consen 81 AFSPHINSPIKSEGNILDMCFLHPSVGYDNPTLAILYVDSQRRTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDEL---P 157 (504)
T ss_dssp TT---EEEE--S-SEEEEEEEES---S-SS-EEEEEEEETT-EEEEEEEE--------EETTTTEEEE--EEEE-T---T
T ss_pred cccccccccccCCceEEEEEEEecccCCCCceEEEEEEEecccceeEEEeeecccccceeeeeccccccccccCCC---c
Confidence 2223344555 678999999998 899999999999988889999999987642 11111 1122223 4
Q ss_pred CEEEecCCCCCceEEEeCCeEEEEcCCc------eeeeecC----CceeeeeeE------EecCCCEEEEEcCCcCeEEE
Q 001387 217 DLLIPVPPPLCGVLIIGEETIVYCSANA------FKAIPIR----PSITKAYGR------VDADGSRYLLGDHAGLLHLL 280 (1088)
Q Consensus 217 ~~liplp~~~~G~lv~~~~~i~y~~~~~------~~~~~~~----~~~~~~~~~------~~~~~~~~ll~~~~G~l~~l 280 (1088)
.+|||+|.|.||+||++++.++|.++.. ...++.+ ..++++|.+ .+.+++++||++++|+||++
T Consensus 158 ~~LIPlp~~~ggllV~~~~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l 237 (504)
T PF10433_consen 158 SFLIPLPNPPGGLLVGGENIIIYKNHLIGSGDYSFLSIPSPPSSSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLL 237 (504)
T ss_dssp EEEEEE-TTT-SEEEEESSEEEEEE------TTEEEEE--H-HHHTS-EEEEEE------SSTTSSEEEEEETTSEEEEE
T ss_pred cEEEEcCCCCcEEEEECCEEEEEecccccccccccccccCCccCCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEE
Confidence 9999999998999999999999996432 2344443 467888875 34567899999999999999
Q ss_pred EEEecCcEEeeEEEEEcCc-cccceEEEEecCC--eEEEeeecCCeEEEEEeeCCCCCCCcEEEEeeeccCCceeeeEEe
Q 001387 281 VITHEKEKVTGLKIELLGE-TSIASTISYLDNA--VVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVV 357 (1088)
Q Consensus 281 ~l~~~~~~v~~~~i~~~~~-~~~~s~l~~l~~~--~lf~gS~~gds~l~~~~~~~~~~~~~~~~~~~l~n~~Pi~D~~~~ 357 (1088)
.+..+++ +++++++|+ .++|+++++++++ +||+||+.|||+++++... .++++++++|||||+||+++
T Consensus 238 ~l~~~~~---~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~------~l~~~~~~~N~~Pi~D~~v~ 308 (504)
T PF10433_consen 238 TLDNDGG---SISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLS------NLEVLDSLPNWGPIVDFCVV 308 (504)
T ss_dssp EEEEEEE---EEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESE------SEEEEEEE----SEEEEEEE
T ss_pred EEEECCC---eEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCC------CcEEEEeccCcCCccceEEe
Confidence 9998875 789999999 8999999999999 9999999999999999953 38999999999999999999
Q ss_pred ccCCCCCc------eEEEEeeCCCCceEEEEecCCcee--EEEeeeCCCcceEEEeecCCCCCCccEEEEEecCceEEEE
Q 001387 358 DLERQGQG------QVVTCSGAYKDGSLRIVRNGIGIN--EQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILA 429 (1088)
Q Consensus 358 ~~~~~~~~------~l~~~sG~g~~g~L~~lr~gi~~~--~~~~~~l~~v~~iw~l~~~~~~~~~~~lilS~~~~T~vl~ 429 (1088)
+...++.. +|++|||.|++|+|+++|+|++++ ..+..++++++++|+++....+ +.||++|++++|+||+
T Consensus 309 ~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~--~~~lv~S~~~~T~vl~ 386 (504)
T PF10433_consen 309 DSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSD--HSYLVLSFPNETRVLQ 386 (504)
T ss_dssp -TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSS--BSEEEEEESSEEEEEE
T ss_pred ccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCC--ceEEEEEcCCceEEEE
Confidence 87655555 999999999999999999999999 8888999999999999876433 8999999999999999
Q ss_pred ecC---CCceeeeeecceeccccceeeeecCCCeEEEEecCcEEEEecCCcceeeeeeCCCCCcEEEEEECCCEEEEEEC
Q 001387 430 MNL---EDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATG 506 (1088)
Q Consensus 430 ~~~---~~~~~e~~~~~f~~~~~Ti~~~~~~~~~ivQVt~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~~~~lvv~~~ 506 (1088)
++. .++++|++..+|.++++||+|++++++.+||||+++||+++.+..+...+|.+|.+..|++|++++.+++++.+
T Consensus 387 ~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~~~~v~v~~~ 466 (504)
T PF10433_consen 387 ISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSIIVAASINDPQVLVALS 466 (504)
T ss_dssp ES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEESSEEEEEESSSTSEEEEEE-TTS---SEEEESSSEEEEEE-
T ss_pred EecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeEEEEEECCCEEEEEEe
Confidence 962 34677774459999999999999999999999999999998766678899999999999999999999999999
Q ss_pred CCeEEEEEEcCcEEEEEee----ccCCceeEEEEeCC
Q 001387 507 GGHLVYLEIGDGILTEVKH----AQLEYEISCLDINP 539 (1088)
Q Consensus 507 ~~~l~~~~~~~~~l~~~~~----~~l~~~is~l~~~~ 539 (1088)
++.+++|+++...+..... .+++.||+|+++.|
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 467 GGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred CCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 9999999998865543222 24789999999876
No 6
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=100.00 E-value=2.8e-50 Score=451.90 Aligned_cols=310 Identities=38% Similarity=0.653 Sum_probs=257.7
Q ss_pred eEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCC---CceEEEEEeeeeCCCCCCCcceEEEEEEEeC-----CeEE
Q 001387 743 MHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDD---SNVYYCVGTAYVLPEENEPTKGRILVFIVED-----GKLQ 814 (1088)
Q Consensus 743 ~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~---~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~-----~kl~ 814 (1088)
+|+|+++|+.+|+++++++|+++|+++|++.|+|..+ .++||||||++..+++..+.+|||++|++.+ .+|+
T Consensus 1 ~s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 1 ASSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp --EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred CcEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 4789999999999999999999999999999999875 4899999999998544444459999999997 4999
Q ss_pred EEEEEEecCceeEeccccCeEEEEECCEEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEEEEeccccEEEEEE
Q 001387 815 LIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIY 894 (1088)
Q Consensus 815 ~~~~~~~~g~v~ai~~~~g~Lv~~~g~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~ 894 (1088)
++++++++|||++|+.++|+|++|+|++|++|+|+.+ ++|.+.++++.+.+++++.+.+|+|++||+++|+++++|
T Consensus 81 ~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~----~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNS----KTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETT----SSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEE
T ss_pred EEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCc----ccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEE
Confidence 9999999999999999999999999999999999522 259999999999999999999999999999999999999
Q ss_pred eccCCeEEEEeccCCCceeEEEEEe-eCceEEEEccCCcEEEEeeCCCCCCccccc-ceeEEEEEEcCCccceEEeeeee
Q 001387 895 KHEEGAIEERARDYNANWMSAVEIL-DDDIYLGAENNFNLFTVRKNSEGATDEERG-RLEVVGEYHLGEFVNRFRHGSLV 972 (1088)
Q Consensus 895 ~~~~~~l~~~~~D~~~~~v~~~~~l-~~~~~l~~D~~gnl~~l~~~~~~~~~~~~~-~L~~~~~f~lg~~v~~~~~~~l~ 972 (1088)
++++.+|.++|||+.++|+++++++ +++.++++|++||+++|+++++..++.++. +|+..++||+|+.|++++++++.
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~ 236 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLI 236 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEee
Confidence 9988889999999999999999999 667899999999999999999888877888 99999999999999999999887
Q ss_pred ecCCCCCCCCccEEEEEcccccEEEEEe-cChhHHHHHHHHHHHHHhccCCCCCCCcccccccccccccCCCCceEehHH
Q 001387 973 MRLPDSDVGQIPTVIFGTVNGVIGVIAS-LPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDL 1051 (1088)
Q Consensus 973 ~~~~~~~~~~~~~~l~~t~~G~i~~l~~-l~~~~~~~L~~lq~~l~~~~~~~~gl~~~~~R~~~~~~~~~~~~~~iDGdl 1051 (1088)
++..+.+....+.++|+|.+|+||.+.| ++++.|++|+.||+.|.+.+++++|++|++||+++++ +...+++||||||
T Consensus 237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l~p~l~~~~~~~L~~lQ~~l~~~~~~~~gl~~~~~R~~~~~-~~~~~~~~iDgdl 315 (321)
T PF03178_consen 237 PRSGSSESPNRPQILYGTVDGSIGVLIPFLSEEEYRFLQALQNNLRKHIPSLGGLNPRSFRSYKNP-RMKRSKGFIDGDL 315 (321)
T ss_dssp --SSSS-TTEEEEEEEEETTS-EEEEEE-E-HHHHHHHHHHHHHHHHHS--TTS--HHHHTSEEES-EEE--BSEEEHHH
T ss_pred ecCCCCcccccceEEEEecCCEEEEEEecCCHHHHHHHHHHHHHHHhhCCCCccCChHHhccccCc-cccCCCccCcHHH
Confidence 5411122224678999999999999999 8999999999999999999999999999999999986 3234899999999
Q ss_pred HHHHhc
Q 001387 1052 IESFLD 1057 (1088)
Q Consensus 1052 l~~fl~ 1057 (1088)
|++|++
T Consensus 316 l~~fl~ 321 (321)
T PF03178_consen 316 LEQFLE 321 (321)
T ss_dssp HHGGGG
T ss_pred HHHhhC
Confidence 999985
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.96 E-value=1.5e-05 Score=87.79 Aligned_cols=213 Identities=17% Similarity=0.215 Sum_probs=137.6
Q ss_pred CCeEEEEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEe
Q 001387 690 EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGC 769 (1088)
Q Consensus 690 ~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~ 769 (1088)
++.|+.-.+....--....++++.+|+-++-.++..+.+|+|.+ .|.++...+.-..-...|++ .
T Consensus 383 Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~-----------~iv~l~~~~~~~~~~~~y~~----s 447 (603)
T KOG0318|consen 383 DDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACIS-----------DIVLLQDQTKVSSIPIGYES----S 447 (603)
T ss_pred CCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecC-----------cEEEEecCCcceeecccccc----c
Confidence 55555544433222233447999999999998888888888864 36666543321111122222 3
Q ss_pred EEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeE-EEEEEEEecCceeEeccc-cCeEEEE--ECCEEEE
Q 001387 770 SILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKL-QLIAEKETKGAVYSLNAF-NGKLLAA--INQKIQL 845 (1088)
Q Consensus 770 si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl-~~~~~~~~~g~v~ai~~~-~g~Lv~~--~g~~l~v 845 (1088)
|++. . ..+.+++||. ..|.+++|.+.+..+ +.....++++++++|..- ++..+++ ...++.+
T Consensus 448 ~vAv---~-~~~~~vaVGG----------~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~ 513 (603)
T KOG0318|consen 448 AVAV---S-PDGSEVAVGG----------QDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVL 513 (603)
T ss_pred eEEE---c-CCCCEEEEec----------ccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEE
Confidence 3332 1 2478899995 237799999987654 445667899999999966 3444444 3368889
Q ss_pred EEeeeccCcccccccccccccceEEEEEEEe--CCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCce
Q 001387 846 YKWMLRDDGTRELQSECGHHGHILALYVQTR--GDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDI 923 (1088)
Q Consensus 846 ~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~--~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~ 923 (1088)
|+.+.+ ..+..+.+++...+ .++.+. ..++..|-+-..+.++..+. |.+- ...++.++..|+.+.++++.+
T Consensus 514 yd~~s~---~~~~~~w~FHtakI--~~~aWsP~n~~vATGSlDt~Viiysv~k-P~~~-i~iknAH~~gVn~v~wlde~t 586 (603)
T KOG0318|consen 514 YDVASR---EVKTNRWAFHTAKI--NCVAWSPNNKLVATGSLDTNVIIYSVKK-PAKH-IIIKNAHLGGVNSVAWLDEST 586 (603)
T ss_pred EEcccC---ceecceeeeeeeeE--EEEEeCCCceEEEeccccceEEEEEccC-hhhh-eEeccccccCceeEEEecCce
Confidence 887532 23455555554444 444443 33666788888887766543 2233 677899999999999999999
Q ss_pred EEEEccCCcEEEEee
Q 001387 924 YLGAENNFNLFTVRK 938 (1088)
Q Consensus 924 ~l~~D~~gnl~~l~~ 938 (1088)
++.+-.+-|+.+...
T Consensus 587 vvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 587 VVSSGQDANIKVWNV 601 (603)
T ss_pred EEeccCcceeEEecc
Confidence 998888888877653
No 8
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=3.7e-05 Score=87.39 Aligned_cols=428 Identities=17% Similarity=0.158 Sum_probs=220.9
Q ss_pred cEEEEecCCcceeeeeeC----------CCCCcEEEEEEC--CCEEEEEECCCeEEEEEEcCcEEEEEeeccC-CceeEE
Q 001387 468 SVRLVSSTSRELRNEWKS----------PPGYSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQL-EYEISC 534 (1088)
Q Consensus 468 ~i~l~~~~~~~~~~~~~~----------~~~~~I~~a~~~--~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l-~~~is~ 534 (1088)
+-||+.......+.||++ +.|..|=+.+++ +..+.|..++|.+.+|.+.++.++-...+.- ...+-|
T Consensus 80 ~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLs 159 (691)
T KOG2048|consen 80 GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLS 159 (691)
T ss_pred CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEE
Confidence 334444333335556653 244466666665 5578888778877777777766654332222 356778
Q ss_pred EEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEE-----ecCCC--CcCceeEEeeeecCceEEEEEeCCCcEEE
Q 001387 535 LDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITK-----EHLGG--EIIPRSVLLCAFEGISYLLCALGDGHLLN 607 (1088)
Q Consensus 535 l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~-----~~l~~--~~~p~si~~~~~~~~~~L~vgl~~G~l~~ 607 (1088)
++..+ ....++.|+- ||-|++|+......+.. ..+.. ..+.=|+++++ ...|..|-..|.+..
T Consensus 160 lsw~~------~~~~i~~Gs~-Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr---d~tI~sgDS~G~V~F 229 (691)
T KOG2048|consen 160 LSWNP------TGTKIAGGSI-DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR---DSTIASGDSAGTVTF 229 (691)
T ss_pred EEecC------CccEEEeccc-CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee---cCcEEEecCCceEEE
Confidence 88864 2456888888 99999999876444431 22221 12233444442 345667777787776
Q ss_pred EEEecCCCccccceeeecCccceeEEEEEeCCceEEEEecCCceEE-EecCCc---EE---EeecccccceeeeccCCCC
Q 001387 608 FLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI-YSSNKK---LL---YSNVNLKEVSHMCPFNSAA 680 (1088)
Q Consensus 608 y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~i-~~~~~~---~~---~~~l~~~~i~~~~~f~~~~ 680 (1088)
+... .+.|...-....+.- ..|. -.+.++.+|+.|-.|-++ |...+. .. ....+...+.+++-+.+
T Consensus 230 Wd~~--~gTLiqS~~~h~adV-l~La--v~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~-- 302 (691)
T KOG2048|consen 230 WDSI--FGTLIQSHSCHDADV-LALA--VADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN-- 302 (691)
T ss_pred Eccc--Ccchhhhhhhhhcce-eEEE--EcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--
Confidence 5433 333322111111110 0111 123457888888666544 443221 11 11222345566665533
Q ss_pred CCCeEEEEe--CCeEEEEEEcCCCCe-EEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCccee-EEEEEEeCCCceE
Q 001387 681 FPDSLAIAK--EGELTIGTIDDIQKL-HIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEM-HFVRLLDDQTFEF 756 (1088)
Q Consensus 681 ~~~~l~~~~--~~~l~i~~l~~~~~~-~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~-s~l~lid~~t~~~ 756 (1088)
+++.. +..|.++........ +.++.+....++ +.-.|+.+++ +.-... ..+.|+ ++.-.--...+.-
T Consensus 303 ----~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~-v~~a~~~~L~-~~w~~h---~v~lwrlGS~~~~g~~~~~~ 373 (691)
T KOG2048|consen 303 ----ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDR-VSVAPENRLL-VLWKAH---GVDLWRLGSVILQGEYNYIH 373 (691)
T ss_pred ----eEEecceeeEEEEccccccCchhhhccccccccce-eecCccceEE-EEeccc---cccceeccCcccccccChhh
Confidence 33322 344555555443222 222222222221 1112222222 221111 000010 1110000123344
Q ss_pred EEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEe-CCeEEEEEEEEec---CceeEeccc-
Q 001387 757 ISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE-DGKLQLIAEKETK---GAVYSLNAF- 831 (1088)
Q Consensus 757 i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~-~~kl~~~~~~~~~---g~v~ai~~~- 831 (1088)
+-.+..++.|.+.|.+.. ...+.|++||.. |+.+|++. ..++++....+.+ -++.++.-.
T Consensus 374 Llkl~~k~~~nIs~~aiS----Pdg~~Ia~st~~-----------~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~fti 438 (691)
T KOG2048|consen 374 LLKLFTKEKENISCAAIS----PDGNLIAISTVS-----------RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTI 438 (691)
T ss_pred heeeecCCccceeeeccC----CCCCEEEEeecc-----------ceEEEEeccCcceeEEEeccchhhhccceeeEEEe
Confidence 556677888888776543 236889999953 55566665 2244443333322 133333322
Q ss_pred -cCeEEEEECCEEEEEEeeeccCcccccccccccccceEEEE--EEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccC
Q 001387 832 -NGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALY--VQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDY 908 (1088)
Q Consensus 832 -~g~Lv~~~g~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~--l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~ 908 (1088)
+++++++..+..-+..++......+++...........+.. .+..||+|.|.+....+++ |+-+..+..++.-+.
T Consensus 439 d~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v--~nl~~~~~~~l~~rl 516 (691)
T KOG2048|consen 439 DKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFV--YNLETLESHLLKVRL 516 (691)
T ss_pred cCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEE--EEcccceeecchhcc
Confidence 45666555444444444333334466655543322222222 3567999999997777765 555666777777666
Q ss_pred CCceeEEEEEe--eCceEEEEccCCcEEEEeeC
Q 001387 909 NANWMSAVEIL--DDDIYLGAENNFNLFTVRKN 939 (1088)
Q Consensus 909 ~~~~v~~~~~l--~~~~~l~~D~~gnl~~l~~~ 939 (1088)
. ..+|++.+- +.++++++++++.++-|..+
T Consensus 517 n-~~vTa~~~~~~~~~~lvvats~nQv~efdi~ 548 (691)
T KOG2048|consen 517 N-IDVTAAAFSPFVRNRLVVATSNNQVFEFDIE 548 (691)
T ss_pred C-cceeeeeccccccCcEEEEecCCeEEEEecc
Confidence 6 888888776 34578999999999999874
No 9
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.08 E-value=0.035 Score=62.12 Aligned_cols=301 Identities=15% Similarity=0.181 Sum_probs=167.8
Q ss_pred EEEEEECCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCC-
Q 001387 500 QVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGG- 578 (1088)
Q Consensus 500 ~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~- 578 (1088)
.+.|++ +|.+-||+.+.++...+ ..--.+.|+|+++.+ ...++.-|.+ ||.|.=|+...... ..+..
T Consensus 293 lItVSl-~G~in~ln~~d~~~~~~-i~GHnK~ITaLtv~~------d~~~i~Sgsy-DG~I~~W~~~~g~~---~~~~g~ 360 (603)
T KOG0318|consen 293 LITVSL-SGTINYLNPSDPSVLKV-ISGHNKSITALTVSP------DGKTIYSGSY-DGHINSWDSGSGTS---DRLAGK 360 (603)
T ss_pred EEEEEc-CcEEEEecccCCChhhe-ecccccceeEEEEcC------CCCEEEeecc-CceEEEEecCCccc---cccccc
Confidence 444444 56777777654332111 011235689998864 2478888888 99999888754221 11110
Q ss_pred --CcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEecCCceEEEec
Q 001387 579 --EIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSS 656 (1088)
Q Consensus 579 --~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~i~~~ 656 (1088)
......+. .-+...+..+|.. ..|-+..+.. +.........+|.+|.-+... .++..+++.+..-.+++.+
T Consensus 361 ~h~nqI~~~~--~~~~~~~~t~g~D-d~l~~~~~~~--~~~t~~~~~~lg~QP~~lav~--~d~~~avv~~~~~iv~l~~ 433 (603)
T KOG0318|consen 361 GHTNQIKGMA--ASESGELFTIGWD-DTLRVISLKD--NGYTKSEVVKLGSQPKGLAVL--SDGGTAVVACISDIVLLQD 433 (603)
T ss_pred cccceEEEEe--ecCCCcEEEEecC-CeEEEEeccc--CcccccceeecCCCceeEEEc--CCCCEEEEEecCcEEEEec
Confidence 01111111 1122333444543 3333332211 123333346799999866543 3445667777777777776
Q ss_pred CCcEEEeecccc-cceeeeccCCCCCCCeEEEEeCCeEEEEEEcCCCC-eEEEEEeCCCccCeEEEecCCCEEEEEEeec
Q 001387 657 NKKLLYSNVNLK-EVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQK-LHIRSIPLGEHPRRICHQEQSRTFAICSLKN 734 (1088)
Q Consensus 657 ~~~~~~~~l~~~-~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~-~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~ 734 (1088)
.+++.-.|+.+. +..+++|-.+ .-.+--.++.+++.+|..... -..+.++....+..|.|+|+...++++-..
T Consensus 434 ~~~~~~~~~~y~~s~vAv~~~~~----~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~- 508 (603)
T KOG0318|consen 434 QTKVSSIPIGYESSAVAVSPDGS----EVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDAS- 508 (603)
T ss_pred CCcceeeccccccceEEEcCCCC----EEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccC-
Confidence 666554444432 2223332211 122334578899999987653 344777888899999999998877655322
Q ss_pred CCCcCcceeEEEEEEeCCCceEEE-EEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC-e
Q 001387 735 QSCAEESEMHFVRLLDDQTFEFIS-TYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG-K 812 (1088)
Q Consensus 735 ~~~~~~~~~s~l~lid~~t~~~i~-~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~-k 812 (1088)
..+-++|..+.++.. +.-|- .-++.|+. |. .+..++|-|. .. -.|++|++++- +
T Consensus 509 ---------rkvv~yd~~s~~~~~~~w~FH-takI~~~a-Ws---P~n~~vATGS--lD--------t~Viiysv~kP~~ 564 (603)
T KOG0318|consen 509 ---------RKVVLYDVASREVKTNRWAFH-TAKINCVA-WS---PNNKLVATGS--LD--------TNVIIYSVKKPAK 564 (603)
T ss_pred ---------CcEEEEEcccCceecceeeee-eeeEEEEE-eC---CCceEEEecc--cc--------ceEEEEEccChhh
Confidence 245666766655421 11121 12345554 42 2244555443 21 37899999843 2
Q ss_pred EEEEEEEEecCceeEeccccCeEEEEECCEEEEEEee
Q 001387 813 LQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWM 849 (1088)
Q Consensus 813 l~~~~~~~~~g~v~ai~~~~g~Lv~~~g~~l~v~~~~ 849 (1088)
- +..+-.+.+.|+++.=.++.-+++.|+.-.+..|.
T Consensus 565 ~-i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 565 H-IIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWN 600 (603)
T ss_pred h-eEeccccccCceeEEEecCceEEeccCcceeEEec
Confidence 2 44455667779999988888888888776655553
No 10
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=0.00084 Score=69.88 Aligned_cols=258 Identities=19% Similarity=0.232 Sum_probs=149.9
Q ss_pred ceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEE
Q 001387 530 YEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFL 609 (1088)
Q Consensus 530 ~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~ 609 (1088)
..||.+.+.+ .+..++|+.| ||++++|+++..++... +....+ ++=+.+.+....+.|.-||.+..|.
T Consensus 14 d~IS~v~f~~------~~~~LLvssW-DgslrlYdv~~~~l~~~--~~~~~p---lL~c~F~d~~~~~~G~~dg~vr~~D 81 (323)
T KOG1036|consen 14 DGISSVKFSP------SSSDLLVSSW-DGSLRLYDVPANSLKLK--FKHGAP---LLDCAFADESTIVTGGLDGQVRRYD 81 (323)
T ss_pred hceeeEEEcC------cCCcEEEEec-cCcEEEEeccchhhhhh--eecCCc---eeeeeccCCceEEEeccCceEEEEE
Confidence 4588888864 3578999999 99999999986433211 111111 1223445567899999999999999
Q ss_pred EecCCCccccceeeecCc--cceeEEEEEeCCceEEEEecCCceEEEecCCcEEEeecc----------cccceeeeccC
Q 001387 610 LNMKTGELTDRKKVSLGT--QPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVN----------LKEVSHMCPFN 677 (1088)
Q Consensus 610 ~~~~~~~l~~~~~~~lG~--~pv~l~~~~~~~~~~v~~~~~~p~~i~~~~~~~~~~~l~----------~~~i~~~~~f~ 677 (1088)
+...+ ...+|+ .|++.... .- ..+.+++|. .++++.++... .+.+.+
T Consensus 82 ln~~~-------~~~igth~~~i~ci~~-~~-~~~~vIsgs-------WD~~ik~wD~R~~~~~~~~d~~kkVy~----- 140 (323)
T KOG1036|consen 82 LNTGN-------EDQIGTHDEGIRCIEY-SY-EVGCVISGS-------WDKTIKFWDPRNKVVVGTFDQGKKVYC----- 140 (323)
T ss_pred ecCCc-------ceeeccCCCceEEEEe-ec-cCCeEEEcc-------cCccEEEEeccccccccccccCceEEE-----
Confidence 87543 234443 45544322 11 123333332 12223222111 011111
Q ss_pred CCCCCCeEEE-EeCCeEEEEEEcCCC-CeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCC---
Q 001387 678 SAAFPDSLAI-AKEGELTIGTIDDIQ-KLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQ--- 752 (1088)
Q Consensus 678 ~~~~~~~l~~-~~~~~l~i~~l~~~~-~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~--- 752 (1088)
..-..+.|+. +.+.++.+..+.... .+..|.-++.+..|.|+..|+..-|++.+.+- +-.++++|+.
T Consensus 141 ~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieG--------RVavE~~d~s~~~ 212 (323)
T KOG1036|consen 141 MDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEG--------RVAVEYFDDSEEA 212 (323)
T ss_pred EeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecc--------eEEEEccCCchHH
Confidence 1112345555 567888888887764 34566678888899999999888888887763 4556666664
Q ss_pred -Cce-EEEEE--ECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeC-CeEEEEEEEEecCceeE
Q 001387 753 -TFE-FISTY--PLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVED-GKLQLIAEKETKGAVYS 827 (1088)
Q Consensus 753 -t~~-~i~~~--~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~-~kl~~~~~~~~~g~v~a 827 (1088)
..+ ....+ .-+.-|.+..+-.+.|.. -+..++-|. +-|.+.+|+..+ ++|+.+++.+..=+..+
T Consensus 213 ~skkyaFkCHr~~~~~~~~~yPVNai~Fhp-~~~tfaTgG----------sDG~V~~Wd~~~rKrl~q~~~~~~SI~sls 281 (323)
T KOG1036|consen 213 QSKKYAFKCHRLSEKDTEIIYPVNAIAFHP-IHGTFATGG----------SDGIVNIWDLFNRKRLKQLAKYETSISSLS 281 (323)
T ss_pred hhhceeEEeeecccCCceEEEEeceeEecc-ccceEEecC----------CCceEEEccCcchhhhhhccCCCCceEEEE
Confidence 111 01111 224556777777777753 244465443 459999999884 46888887744334444
Q ss_pred eccccCeEEEEE
Q 001387 828 LNAFNGKLLAAI 839 (1088)
Q Consensus 828 i~~~~g~Lv~~~ 839 (1088)
.+.-...|.+|.
T Consensus 282 fs~dG~~LAia~ 293 (323)
T KOG1036|consen 282 FSMDGSLLAIAS 293 (323)
T ss_pred eccCCCeEEEEe
Confidence 443344555553
No 11
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.98 E-value=0.027 Score=63.69 Aligned_cols=185 Identities=14% Similarity=0.131 Sum_probs=102.1
Q ss_pred CCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEE-----EEECCCCceEeEEEEEEEcCCCceEEEE
Q 001387 712 GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIS-----TYPLDTFEYGCSILSCSFSDDSNVYYCV 786 (1088)
Q Consensus 712 ~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~-----~~~~~~~E~v~si~~~~~~~~~~~~i~V 786 (1088)
...|+.++++|+.+.+.|+.... ..|.++|..+...+. ....+.++.+..+ .+..+ .+++.|
T Consensus 125 ~~~~~~~~~~p~g~~l~v~~~~~---------~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~---~~~pd-g~~lyv 191 (330)
T PRK11028 125 LEGCHSANIDPDNRTLWVPCLKE---------DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHM---VFHPN-QQYAYC 191 (330)
T ss_pred CCcccEeEeCCCCCEEEEeeCCC---------CEEEEEEECCCCcccccCCCceecCCCCCCceE---EECCC-CCEEEE
Confidence 35688888999888877776432 467888765532221 2344455555444 34433 345555
Q ss_pred EeeeeCCCCCCCcceEEEEEEEeC--CeEEEEEEEEe-----cCcee--E--eccccCeEEEEEC--CEEEEEEeeeccC
Q 001387 787 GTAYVLPEENEPTKGRILVFIVED--GKLQLIAEKET-----KGAVY--S--LNAFNGKLLAAIN--QKIQLYKWMLRDD 853 (1088)
Q Consensus 787 GT~~~~~~e~~~~~Gri~v~~i~~--~kl~~~~~~~~-----~g~v~--a--i~~~~g~Lv~~~g--~~l~v~~~~~~~~ 853 (1088)
... ..+.|.+|++.. ++++.+.+... .++-. + +.+=+.+|+++.. +.|.+|+++. +.
T Consensus 192 ~~~---------~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~-~~ 261 (330)
T PRK11028 192 VNE---------LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE-DG 261 (330)
T ss_pred Eec---------CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC-CC
Confidence 542 358999999983 46766655432 22222 2 2232345777643 6788988742 22
Q ss_pred cccccccccccccceEEEEEEEeCCEEEEEec-cccEEEEEEeccCCeEEEEeccCCCceeEEEEEe
Q 001387 854 GTRELQSECGHHGHILALYVQTRGDFIVVGDL-MKSISLLIYKHEEGAIEERARDYNANWMSAVEIL 919 (1088)
Q Consensus 854 ~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~-~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l 919 (1088)
+..++.........+....++..|.+++++.. ...+.+++.+.+.+.|..+++=....+..++.+|
T Consensus 262 ~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~~~ 328 (330)
T PRK11028 262 SVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAVGQGPMWVSVL 328 (330)
T ss_pred CeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEccccccCCCceEEEEE
Confidence 22233322111111123345556889999876 4568888777666677666543333444444443
No 12
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.94 E-value=0.087 Score=61.62 Aligned_cols=443 Identities=15% Similarity=0.115 Sum_probs=224.4
Q ss_pred ecCCCEEEEEcCCcCeEEEEEEecCcEEeeEEEEEcCccccceEEEEecCCeEEEeeecCCeEEEEEeeCCC-CCCCcEE
Q 001387 262 DADGSRYLLGDHAGLLHLLVITHEKEKVTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPD-AKGSYVE 340 (1088)
Q Consensus 262 ~~~~~~~ll~~~~G~l~~l~l~~~~~~v~~~~i~~~~~~~~~s~l~~l~~~~lf~gS~~gds~l~~~~~~~~-~~~~~~~ 340 (1088)
..++..++..||.|+..++.+.. ...+.++.-.....|+..-.||-+|+.+....-++++....-. +-.. +.
T Consensus 64 Sp~g~lllavdE~g~~~lvs~~~------r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~p-Fv 136 (893)
T KOG0291|consen 64 SPDGTLLLAVDERGRALLVSLLS------RSVLHRFNFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNP-FV 136 (893)
T ss_pred CCCceEEEEEcCCCcEEEEeccc------ceeeEEEeecCccceEEECCCCcEEEEEecceeEEEecCcchhcccCc-ce
Confidence 44667889999999999888853 3334333334466788888899999887666666666654321 1111 21
Q ss_pred EEeeeccCCceeeeEEeccCCCCCceEEEEeeCCCCceEEEE---------------------ecCCceeEEEeeeCCCc
Q 001387 341 VLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIV---------------------RNGIGINEQASVELQGI 399 (1088)
Q Consensus 341 ~~~~l~n~~Pi~D~~~~~~~~~~~~~l~~~sG~g~~g~L~~l---------------------r~gi~~~~~~~~~l~~v 399 (1088)
.. =.+.|+--|++-++-. ...++++..+......|.-+ --|..-..+.+..-.|.
T Consensus 137 l~--r~~~g~fddi~si~Ws--~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~ 212 (893)
T KOG0291|consen 137 LH--RTYLGHFDDITSIDWS--DDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGA 212 (893)
T ss_pred Ee--eeecCCccceeEEEec--cCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCce
Confidence 11 1344555555544321 11222222111111111111 11111111222222355
Q ss_pred ceEEEeecCCCCCCccEEEEEecCceEEEEecCCCceee---------eeecceeccccceeeeecCCC--eEEEEecCc
Q 001387 400 KGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEE---------TEIEGFCSQTQTLFCHDAIYN--QLVQVTSGS 468 (1088)
Q Consensus 400 ~~iw~l~~~~~~~~~~~lilS~~~~T~vl~~~~~~~~~e---------~~~~~f~~~~~Ti~~~~~~~~--~ivQVt~~~ 468 (1088)
.-+|+........... =-....+.--...++ -|| .....|.-+..-+-|+.+..+ .++--.+++
T Consensus 213 l~~W~~~~~P~~~~~~---~kd~eg~~d~~~~~~--~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG 287 (893)
T KOG0291|consen 213 LFVWTCDLRPPELDKA---EKDEEGSDDEEMDED--GEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSG 287 (893)
T ss_pred EEEEEecCCCcccccc---ccccccccccccccc--chhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCC
Confidence 5555554211000000 000000000000000 111 011222222334455555433 333333555
Q ss_pred EE-EEecCCcceeeeeeCCCCCcEEEEEEC--CCEEEEEECC-CeEEEEEEcCcE--EEEEeeccCCceeEEEEeCCCCC
Q 001387 469 VR-LVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLATGG-GHLVYLEIGDGI--LTEVKHAQLEYEISCLDINPIGE 542 (1088)
Q Consensus 469 i~-l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~~~-~~l~~~~~~~~~--l~~~~~~~l~~~is~l~~~~~~~ 542 (1088)
+. ++.......++.... ...+|..++.| ++++.+..+. |.++..+-.... +.+..+ ...++|++.+|
T Consensus 288 ~f~LyelP~f~lih~LSi-s~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH---~~~i~~l~YSp--- 360 (893)
T KOG0291|consen 288 EFGLYELPDFNLIHSLSI-SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGH---SDRITSLAYSP--- 360 (893)
T ss_pred eeEEEecCCceEEEEeec-ccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccc---ccceeeEEECC---
Confidence 54 555444445555432 33578899987 8999887654 455554554322 222222 24688998865
Q ss_pred CCCCccEEEEEEecCCEEEEEECCC-CCce-EEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccc
Q 001387 543 NPSYSQIAAVGMWTDISVRIFSLPD-LNLI-TKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDR 620 (1088)
Q Consensus 543 ~~~~~~~~~vg~w~~~~i~i~~l~~-l~~~-~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~ 620 (1088)
.+.+++-|.. ||.+.||+... +..+ ++++-+ ....+.+.. ....|+...-||.+-.+.+.. .++-
T Consensus 361 ---Dgq~iaTG~e-DgKVKvWn~~SgfC~vTFteHts---~Vt~v~f~~--~g~~llssSLDGtVRAwDlkR----YrNf 427 (893)
T KOG0291|consen 361 ---DGQLIATGAE-DGKVKVWNTQSGFCFVTFTEHTS---GVTAVQFTA--RGNVLLSSSLDGTVRAWDLKR----YRNF 427 (893)
T ss_pred ---CCcEEEeccC-CCcEEEEeccCceEEEEeccCCC---ceEEEEEEe--cCCEEEEeecCCeEEeeeecc----ccee
Confidence 2578888888 99999999854 4433 233332 122222232 346688888899998877643 1222
Q ss_pred eeeecCccceeEEEEEeCCceEEEEecCC-ceEEE-ec--CCcE-EEeecccccceeeeccCCCCCCCeEEEEe-CCeEE
Q 001387 621 KKVSLGTQPITLRTFSSKNTTHVFAASDR-PTVIY-SS--NKKL-LYSNVNLKEVSHMCPFNSAAFPDSLAIAK-EGELT 694 (1088)
Q Consensus 621 ~~~~lG~~pv~l~~~~~~~~~~v~~~~~~-p~~i~-~~--~~~~-~~~~l~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~ 694 (1088)
| .+-++.|+++..+..+...-+.+.|+. .+=|+ ++ .|++ .+..-+..++.+++ |+. ..+.|+-.+ ++.++
T Consensus 428 R-Tft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~-f~~--~~~~LaS~SWDkTVR 503 (893)
T KOG0291|consen 428 R-TFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLS-FSP--DGSLLASGSWDKTVR 503 (893)
T ss_pred e-eecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeE-Ecc--ccCeEEeccccceEE
Confidence 2 234677888876644322234444544 33333 22 2443 23333445665422 111 112333334 77777
Q ss_pred EEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCce
Q 001387 695 IGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFE 755 (1088)
Q Consensus 695 i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~ 755 (1088)
+=.+-.. +-.+..+++...+..+.+.|+.+-++|++.+ +.|-++|.+...
T Consensus 504 iW~if~s-~~~vEtl~i~sdvl~vsfrPdG~elaVaTld----------gqItf~d~~~~~ 553 (893)
T KOG0291|consen 504 IWDIFSS-SGTVETLEIRSDVLAVSFRPDGKELAVATLD----------GQITFFDIKEAV 553 (893)
T ss_pred EEEeecc-CceeeeEeeccceeEEEEcCCCCeEEEEEec----------ceEEEEEhhhce
Confidence 7666432 2256778888888899999999999999986 346666654433
No 13
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.034 Score=58.58 Aligned_cols=144 Identities=15% Similarity=0.243 Sum_probs=97.9
Q ss_pred CCeEEEEe---CCeEEEEEEcCCCCeEEEEEeCCC----ccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCc
Q 001387 682 PDSLAIAK---EGELTIGTIDDIQKLHIRSIPLGE----HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTF 754 (1088)
Q Consensus 682 ~~~l~~~~---~~~l~i~~l~~~~~~~~~~i~l~~----tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~ 754 (1088)
|+|++++. .+.+++..+-...+=+.+++.++. .-..+-|+|+.+..++.+.. +.+.++|.-++
T Consensus 150 p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~----------s~~~~lDAf~G 219 (311)
T KOG1446|consen 150 PEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA----------SFIYLLDAFDG 219 (311)
T ss_pred CCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC----------CcEEEEEccCC
Confidence 56777754 347888888777665666666663 24568899999988777643 68899999999
Q ss_pred eEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccccCe
Q 001387 755 EFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGK 834 (1088)
Q Consensus 755 ~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~g~ 834 (1088)
..+.+++..+++.-..+. ..|.. ..+|++.|. ..|+|++|++..++........-.|++.++. |+-+
T Consensus 220 ~~~~tfs~~~~~~~~~~~-a~ftP-ds~Fvl~gs----------~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~-fnP~ 286 (311)
T KOG1446|consen 220 TVKSTFSGYPNAGNLPLS-ATFTP-DSKFVLSGS----------DDGTIHVWNLETGKKVAVLRGPNGGPVSCVR-FNPR 286 (311)
T ss_pred cEeeeEeeccCCCCccee-EEECC-CCcEEEEec----------CCCcEEEEEcCCCcEeeEecCCCCCCccccc-cCCc
Confidence 999999988877644432 23432 256666664 4599999999755544444444466777766 7643
Q ss_pred --EEEEECCEEEEEEe
Q 001387 835 --LLAAINQKIQLYKW 848 (1088)
Q Consensus 835 --Lv~~~g~~l~v~~~ 848 (1088)
.+++.+.++..+-.
T Consensus 287 ~~mf~sa~s~l~fw~p 302 (311)
T KOG1446|consen 287 YAMFVSASSNLVFWLP 302 (311)
T ss_pred eeeeeecCceEEEEec
Confidence 45667777776553
No 14
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.90 E-value=0.048 Score=63.52 Aligned_cols=359 Identities=16% Similarity=0.147 Sum_probs=190.8
Q ss_pred CcEEEEEEC--CCEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECC
Q 001387 489 YSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLP 566 (1088)
Q Consensus 489 ~~I~~a~~~--~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~ 566 (1088)
..|++-++. +..++.+..+..+-.++++.|++...-+..-+..+--+++.| .+..++.|-- |+.+.+|++.
T Consensus 63 d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~------~g~LlAtgga-D~~v~VWdi~ 135 (775)
T KOG0319|consen 63 DEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDP------TGTLLATGGA-DGRVKVWDIK 135 (775)
T ss_pred hhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcC------CCceEEeccc-cceEEEEEee
Confidence 467777765 334444444444555566555433221122245566667765 2467777766 9999999997
Q ss_pred CCCceEE-ecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCcc-----ccceeeecCccceeEEEEEeCCc
Q 001387 567 DLNLITK-EHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGEL-----TDRKKVSLGTQPITLRTFSSKNT 640 (1088)
Q Consensus 567 ~l~~~~~-~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l-----~~~~~~~lG~~pv~l~~~~~~~~ 640 (1088)
.-...+. ...+ .+..++++.+......|..|-.||.+..|.+......+ .......++ +..+ .
T Consensus 136 ~~~~th~fkG~g--GvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~--------~~~d-~ 204 (775)
T KOG0319|consen 136 NGYCTHSFKGHG--GVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLA--------FSED-S 204 (775)
T ss_pred CCEEEEEecCCC--ceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeee--------eccC-C
Confidence 5433222 2222 35566665544444557789999999999987432111 011111111 1111 2
Q ss_pred eEEEEecCCceEEEec---CCcEEEeecccccceeeeccCCCCCCC-eEEEEeCCeEEEEEEcCCC--CeEEEEEeCCCc
Q 001387 641 THVFAASDRPTVIYSS---NKKLLYSNVNLKEVSHMCPFNSAAFPD-SLAIAKEGELTIGTIDDIQ--KLHIRSIPLGEH 714 (1088)
Q Consensus 641 ~~v~~~~~~p~~i~~~---~~~~~~~~l~~~~i~~~~~f~~~~~~~-~l~~~~~~~l~i~~l~~~~--~~~~~~i~l~~t 714 (1088)
..++..|.--.++.++ -..+...|+. +.+.++.-.+.+.-.. ..+++.+++=.+...+... -.-.++.+-++.
T Consensus 205 ~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e 283 (775)
T KOG0319|consen 205 LELLSVGRDKVIIVWDLVQYKKLKTLPLY-ESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEE 283 (775)
T ss_pred ceEEEeccCcEEEEeehhhhhhhheechh-hheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchh
Confidence 2333344333333332 1234444554 4455555444422222 3555555554555554432 122233332444
Q ss_pred cCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCC
Q 001387 715 PRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPE 794 (1088)
Q Consensus 715 p~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~ 794 (1088)
..+.++.+..+-++.++.+. .+.|+|..+.+...++ -.-||.+..|+.| .....+++|.|.
T Consensus 284 ~~~~~~~~~~~~~l~vtaeQ----------nl~l~d~~~l~i~k~i-vG~ndEI~Dm~~l---G~e~~~laVATN----- 344 (775)
T KOG0319|consen 284 IDHLLAIESMSQLLLVTAEQ----------NLFLYDEDELTIVKQI-VGYNDEILDMKFL---GPEESHLAVATN----- 344 (775)
T ss_pred hhcceeccccCceEEEEccc----------eEEEEEccccEEehhh-cCCchhheeeeec---CCccceEEEEeC-----
Confidence 66778888877777777654 5788888777665443 3556778888876 224689999994
Q ss_pred CCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cCeEEEEEC--CEEEEEEeeeccCcccccccccccccc---e
Q 001387 795 ENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAIN--QKIQLYKWMLRDDGTRELQSECGHHGH---I 868 (1088)
Q Consensus 795 e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g~Lv~~~g--~~l~v~~~~~~~~~~~~L~~~~~~~~~---~ 868 (1088)
.+++.+|+...-..+++. -+...|.++..+ .|-|+++.+ +++.+++++ ++..+....+...++ +
T Consensus 345 -----s~~lr~y~~~~~~c~ii~--GH~e~vlSL~~~~~g~llat~sKD~svilWr~~---~~~~~~~~~a~~~gH~~sv 414 (775)
T KOG0319|consen 345 -----SPELRLYTLPTSYCQIIP--GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLN---NNCSKSLCVAQANGHTNSV 414 (775)
T ss_pred -----CCceEEEecCCCceEEEe--CchhheeeeeecccCcEEEEecCCceEEEEEec---CCcchhhhhhhhccccccc
Confidence 356777766544444333 456688888855 454555544 678888873 223333333222222 2
Q ss_pred EEEEEEEeCC-EEEEEeccccEEEEEEe
Q 001387 869 LALYVQTRGD-FIVVGDLMKSISLLIYK 895 (1088)
Q Consensus 869 ~~~~l~~~~~-~I~vgD~~~Sv~~~~~~ 895 (1088)
.++.+..-+- +.+.+---..+.+..+.
T Consensus 415 gava~~~~~asffvsvS~D~tlK~W~l~ 442 (775)
T KOG0319|consen 415 GAVAGSKLGASFFVSVSQDCTLKLWDLP 442 (775)
T ss_pred ceeeecccCccEEEEecCCceEEEecCC
Confidence 3455533332 44444444445554443
No 15
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.89 E-value=0.072 Score=59.35 Aligned_cols=385 Identities=15% Similarity=0.201 Sum_probs=202.9
Q ss_pred EEEEEEC--CCEEEEEECCCeEEEEEEcCcEEEEE----eeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEE
Q 001387 491 VNVATAN--ASQVLLATGGGHLVYLEIGDGILTEV----KHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFS 564 (1088)
Q Consensus 491 I~~a~~~--~~~lvv~~~~~~l~~~~~~~~~l~~~----~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~ 564 (1088)
+..|+.. +..++|+...+.+.++....+.|.+. +..+- +-|.|+.+.+ ..-++-|- .+|.|.||+
T Consensus 203 v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ek-k~Vl~v~F~e-------ngdviTgD-S~G~i~Iw~ 273 (626)
T KOG2106|consen 203 VFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREK-KFVLCVTFLE-------NGDVITGD-SGGNILIWS 273 (626)
T ss_pred EEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccc-eEEEEEEEcC-------CCCEEeec-CCceEEEEe
Confidence 4555554 55778888778888876655555442 22222 5688999864 23344444 489999999
Q ss_pred CCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecC----CCccccceeeec--CccceeEEEEEeC
Q 001387 565 LPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMK----TGELTDRKKVSL--GTQPITLRTFSSK 638 (1088)
Q Consensus 565 l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~----~~~l~~~~~~~l--G~~pv~l~~~~~~ 638 (1088)
-....+... +. .-++..+-++-++||.|+.=.-|.. +..++..+...+ ..-|++-.. +
T Consensus 274 ~~~~~~~k~-----------~~--aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~-e-- 337 (626)
T KOG2106|consen 274 KGTNRISKQ-----------VH--AHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVA-E-- 337 (626)
T ss_pred CCCceEEeE-----------ee--ecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEe-c--
Confidence 754333211 11 1123456677777777765111100 001111111111 112333321 2
Q ss_pred CceEEEEecCCceEEEec-CCcEEE-eecccccceeeeccCCCCCCCeEEEE-eCCeEEEEEEcCCCCeEEEEEeCCCcc
Q 001387 639 NTTHVFAASDRPTVIYSS-NKKLLY-SNVNLKEVSHMCPFNSAAFPDSLAIA-KEGELTIGTIDDIQKLHIRSIPLGEHP 715 (1088)
Q Consensus 639 ~~~~v~~~~~~p~~i~~~-~~~~~~-~~l~~~~i~~~~~f~~~~~~~~l~~~-~~~~l~i~~l~~~~~~~~~~i~l~~tp 715 (1088)
+...+++-..|-.++..+ ++++.. ...+.+..-.++.-. ..+.++-+ .++.+++=+ ..+ ..-+..+++..
T Consensus 338 ~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp---s~~q~~T~gqdk~v~lW~---~~k-~~wt~~~~d~~ 410 (626)
T KOG2106|consen 338 GKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP---SKNQLLTCGQDKHVRLWN---DHK-LEWTKIIEDPA 410 (626)
T ss_pred CCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC---ChhheeeccCcceEEEcc---CCc-eeEEEEecCce
Confidence 334466666666776654 344432 222333444433211 11223322 244444443 222 23344456778
Q ss_pred CeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCC
Q 001387 716 RRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEE 795 (1088)
Q Consensus 716 ~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e 795 (1088)
+...+||.. .+++.+.. +..-++|-.+-..+.- .-+ +|.+.++.. . ....++|||+-
T Consensus 411 ~~~~fhpsg-~va~Gt~~----------G~w~V~d~e~~~lv~~-~~d-~~~ls~v~y---s-p~G~~lAvgs~------ 467 (626)
T KOG2106|consen 411 ECADFHPSG-VVAVGTAT----------GRWFVLDTETQDLVTI-HTD-NEQLSVVRY---S-PDGAFLAVGSH------ 467 (626)
T ss_pred eEeeccCcc-eEEEeecc----------ceEEEEecccceeEEE-Eec-CCceEEEEE---c-CCCCEEEEecC------
Confidence 889999887 77777643 4566777776444433 333 888776653 3 24689999983
Q ss_pred CCCcceEEEEEEEeCC--eEEEEEEEEecCceeEeccc-cCeEEEEECCEEEEEEeeeccCccccccc--ccccccce--
Q 001387 796 NEPTKGRILVFIVEDG--KLQLIAEKETKGAVYSLNAF-NGKLLAAINQKIQLYKWMLRDDGTRELQS--ECGHHGHI-- 868 (1088)
Q Consensus 796 ~~~~~Gri~v~~i~~~--kl~~~~~~~~~g~v~ai~~~-~g~Lv~~~g~~l~v~~~~~~~~~~~~L~~--~~~~~~~~-- 868 (1088)
.+.||+|+++.+ |++.+.+..- .|++.+.-- ++..+.+....-.+.-|... .-++..+ -..+.+..
T Consensus 468 ----d~~iyiy~Vs~~g~~y~r~~k~~g-s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~--~~~~~ts~kDvkW~t~~c~ 540 (626)
T KOG2106|consen 468 ----DNHIYIYRVSANGRKYSRVGKCSG-SPITHLDWSSDSQFLVSNSGDYEILYWKPS--ECKQITSVKDVKWATYTCT 540 (626)
T ss_pred ----CCeEEEEEECCCCcEEEEeeeecC-ceeEEeeecCCCceEEeccCceEEEEEccc--cCcccceecceeeeeeEEE
Confidence 468999999943 5555555555 788877633 45555554444344445311 1111111 01111110
Q ss_pred --------------EEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCce-EEEEccCCcE
Q 001387 869 --------------LALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDI-YLGAENNFNL 933 (1088)
Q Consensus 869 --------------~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~-~l~~D~~gnl 933 (1088)
.+++-+-.++.+..||..--+.+++|-....+-.-.-.--+...++++.|+-++. ++.+-++-.+
T Consensus 541 lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si 620 (626)
T KOG2106|consen 541 LGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSI 620 (626)
T ss_pred EEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceE
Confidence 1112223567888999999999999865433222222234667889999997765 4444456555
Q ss_pred EEEe
Q 001387 934 FTVR 937 (1088)
Q Consensus 934 ~~l~ 937 (1088)
+..+
T Consensus 621 ~qW~ 624 (626)
T KOG2106|consen 621 MQWR 624 (626)
T ss_pred EEEE
Confidence 5443
No 16
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.82 E-value=0.014 Score=65.68 Aligned_cols=193 Identities=14% Similarity=0.109 Sum_probs=122.2
Q ss_pred CCEEEEEEeecCCCcCcceeEEEEEEeCCC-------ceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCC
Q 001387 724 SRTFAICSLKNQSCAEESEMHFVRLLDDQT-------FEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEEN 796 (1088)
Q Consensus 724 ~~~~~v~~~~~~~~~~~~~~s~l~lid~~t-------~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~ 796 (1088)
...++|++.....++.+...+.+.+++-.. ++.+...++ ...+++++.+ +.++++|.+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~--~g~V~ai~~~------~~~lv~~~g------- 106 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEV--KGPVTAICSF------NGRLVVAVG------- 106 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEE--SS-EEEEEEE------TTEEEEEET-------
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEee--cCcceEhhhh------CCEEEEeec-------
Confidence 456667776553222222338888887654 234455555 3457888776 344777763
Q ss_pred CCcceEEEEEEEeCCe-EEEEEEEEecCceeEeccccCeEEEEEC-CEEEEEEeeeccCcccccccccccccceEEEEEE
Q 001387 797 EPTKGRILVFIVEDGK-LQLIAEKETKGAVYSLNAFNGKLLAAIN-QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQ 874 (1088)
Q Consensus 797 ~~~~Gri~v~~i~~~k-l~~~~~~~~~g~v~ai~~~~g~Lv~~~g-~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~ 874 (1088)
++|++|++.+.+ +...+..+.+..++++..++++|+++-- +.+.++.|+.. ..+|...+.-.....++++.
T Consensus 107 ----~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~---~~~l~~va~d~~~~~v~~~~ 179 (321)
T PF03178_consen 107 ----NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEE---NNKLILVARDYQPRWVTAAE 179 (321)
T ss_dssp ----TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETT---TE-EEEEEEESS-BEEEEEE
T ss_pred ----CEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEcc---CCEEEEEEecCCCccEEEEE
Confidence 599999999887 9999999999999999999999988865 77889988631 23454444322233345544
Q ss_pred Ee--CCEEEEEeccccEEEEEEecc------CC-eEEEEeccCCCceeEEE---EEee----Cc-----eEEEEccCCcE
Q 001387 875 TR--GDFIVVGDLMKSISLLIYKHE------EG-AIEERARDYNANWMSAV---EILD----DD-----IYLGAENNFNL 933 (1088)
Q Consensus 875 ~~--~~~I~vgD~~~Sv~~~~~~~~------~~-~l~~~~~D~~~~~v~~~---~~l~----~~-----~~l~~D~~gnl 933 (1088)
.. ++.++++|....+.+++++++ .. +|...+.=.....+++. .+.. .+ .++.+-.+|.|
T Consensus 180 ~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~I 259 (321)
T PF03178_consen 180 FLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSI 259 (321)
T ss_dssp EE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-E
T ss_pred EecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEE
Confidence 43 469999999999999999863 23 78777765555556555 2222 12 26777799999
Q ss_pred EEEee
Q 001387 934 FTVRK 938 (1088)
Q Consensus 934 ~~l~~ 938 (1088)
..+..
T Consensus 260 g~l~p 264 (321)
T PF03178_consen 260 GVLIP 264 (321)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 96654
No 17
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.78 E-value=0.045 Score=62.17 Aligned_cols=275 Identities=17% Similarity=0.205 Sum_probs=152.8
Q ss_pred EEEEEecC---CEEEEEECCC--CCceEEecCCCCcCceeEEeeeecCceEEEEEeC----CCcEEEEEEecCCCccccc
Q 001387 550 AAVGMWTD---ISVRIFSLPD--LNLITKEHLGGEIIPRSVLLCAFEGISYLLCALG----DGHLLNFLLNMKTGELTDR 620 (1088)
Q Consensus 550 ~~vg~w~~---~~i~i~~l~~--l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~----~G~l~~y~~~~~~~~l~~~ 620 (1088)
+.||+|.+ +.|..|++++ -++...+.......|.-+.+.+ +..+|++... +|.+..|.++..++.|...
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~--~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~ 79 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSP--DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL 79 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-T--TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEe--CCCEEEEEEccccCCCCEEEEEECCCcceeEEe
Confidence 67899954 7899999832 2221111121123455555432 4567777665 6899999999877777766
Q ss_pred eeee-cCccceeEEEEEeCCceEEEEec--CCceEEEe-c-CCcEEEee-cc-c---------ccceeeeccCCCCCCC-
Q 001387 621 KKVS-LGTQPITLRTFSSKNTTHVFAAS--DRPTVIYS-S-NKKLLYSN-VN-L---------KEVSHMCPFNSAAFPD- 683 (1088)
Q Consensus 621 ~~~~-lG~~pv~l~~~~~~~~~~v~~~~--~~p~~i~~-~-~~~~~~~~-l~-~---------~~i~~~~~f~~~~~~~- 683 (1088)
.+.. .|..|+.+.. ..+...+++.. +....++. + ++++.-.. +. . +.-...... ...|+
T Consensus 80 ~~~~~~g~~p~~i~~--~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v--~~~pdg 155 (345)
T PF10282_consen 80 NSVPSGGSSPCHIAV--DPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQV--VFSPDG 155 (345)
T ss_dssp EEEEESSSCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEE--EE-TTS
T ss_pred eeeccCCCCcEEEEE--ecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeE--EECCCC
Confidence 5554 6888887643 23445666652 22232332 2 24432110 00 0 000000000 01233
Q ss_pred eEEE-Ee--CCeEEEEEEcCCC-Ce---EEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeC----C
Q 001387 684 SLAI-AK--EGELTIGTIDDIQ-KL---HIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDD----Q 752 (1088)
Q Consensus 684 ~l~~-~~--~~~l~i~~l~~~~-~~---~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~----~ 752 (1088)
.+++ ++ .+.+.+..++... .+ ..-+++.|.-||+++++|+.+.+.|++-.. +.|..++- .
T Consensus 156 ~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s---------~~v~v~~~~~~~g 226 (345)
T PF10282_consen 156 RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS---------NTVSVFDYDPSDG 226 (345)
T ss_dssp SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT---------TEEEEEEEETTTT
T ss_pred CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCC---------CcEEEEeecccCC
Confidence 2444 44 6889999998765 23 334678899999999999988776665321 23333322 2
Q ss_pred CceEEEEEECCC-CceE-eEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEe--CCeEEEEEEEEecCc-eeE
Q 001387 753 TFEFISTYPLDT-FEYG-CSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE--DGKLQLIAEKETKGA-VYS 827 (1088)
Q Consensus 753 t~~~i~~~~~~~-~E~v-~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~--~~kl~~~~~~~~~g~-v~a 827 (1088)
.++.+..+..-+ +-.. .....+.+..+ .+|+.|... ....|-+|+++ .++|+.+......|. +..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~i~ispd-g~~lyvsnr---------~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~ 296 (345)
T PF10282_consen 227 SLTEIQTISTLPEGFTGENAPAEIAISPD-GRFLYVSNR---------GSNSISVFDLDPATGTLTLVQTVPTGGKFPRH 296 (345)
T ss_dssp EEEEEEEEESCETTSCSSSSEEEEEE-TT-SSEEEEEEC---------TTTEEEEEEECTTTTTEEEEEEEEESSSSEEE
T ss_pred ceeEEEEeeeccccccccCCceeEEEecC-CCEEEEEec---------cCCEEEEEEEecCCCceEEEEEEeCCCCCccE
Confidence 344555554321 1110 12233345543 456666542 25689999995 468999888888665 676
Q ss_pred ecc--ccCeEEEEEC--CEEEEEEee
Q 001387 828 LNA--FNGKLLAAIN--QKIQLYKWM 849 (1088)
Q Consensus 828 i~~--~~g~Lv~~~g--~~l~v~~~~ 849 (1088)
+.. -+.+|+++.. +.|.+|+++
T Consensus 297 ~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 297 FAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 654 3456777653 589999985
No 18
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.73 E-value=0.083 Score=57.16 Aligned_cols=271 Identities=17% Similarity=0.197 Sum_probs=140.5
Q ss_pred CceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEE
Q 001387 529 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNF 608 (1088)
Q Consensus 529 ~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y 608 (1088)
...|+|+++.+ ...+++++.. +|.+.+|++.+.+........ .....++.... +..+++++..+|.+..|
T Consensus 9 ~~~i~~~~~~~------~~~~l~~~~~-~g~i~i~~~~~~~~~~~~~~~-~~~i~~~~~~~--~~~~l~~~~~~~~i~i~ 78 (289)
T cd00200 9 TGGVTCVAFSP------DGKLLATGSG-DGTIKVWDLETGELLRTLKGH-TGPVRDVAASA--DGTYLASGSSDKTIRLW 78 (289)
T ss_pred CCCEEEEEEcC------CCCEEEEeec-CcEEEEEEeeCCCcEEEEecC-CcceeEEEECC--CCCEEEEEcCCCeEEEE
Confidence 35688998865 2578888877 999999999765433221111 11112333332 33578888899999999
Q ss_pred EEecCCCccccceeeecCccceeEEEEEeCCceEEEEec--CCceEEEecC-CcEEE-eecccccceeeeccCCCCCCCe
Q 001387 609 LLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAAS--DRPTVIYSSN-KKLLY-SNVNLKEVSHMCPFNSAAFPDS 684 (1088)
Q Consensus 609 ~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~--~~p~~i~~~~-~~~~~-~~l~~~~i~~~~~f~~~~~~~~ 684 (1088)
.+.... ..+.......++.-..+. .. ..+++.+ +....++.-. ++... .......+.+++ |+.. ...
T Consensus 79 ~~~~~~----~~~~~~~~~~~i~~~~~~-~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~--~~~ 149 (289)
T cd00200 79 DLETGE----CVRTLTGHTSYVSSVAFS-PD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA-FSPD--GTF 149 (289)
T ss_pred EcCccc----ceEEEeccCCcEEEEEEc-CC-CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEE-EcCc--CCE
Confidence 876421 111111111122211221 11 2344433 3333333322 22211 111112233322 2211 233
Q ss_pred EEEEe-CCeEEEEEEcCCCCeEEEEEeCC-CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEEC
Q 001387 685 LAIAK-EGELTIGTIDDIQKLHIRSIPLG-EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPL 762 (1088)
Q Consensus 685 l~~~~-~~~l~i~~l~~~~~~~~~~i~l~-~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~ 762 (1088)
++..+ ++.+.+..+..... .+.+... ..+..+.++|..+.+++++.+ +.++++|..+++.+..+.-
T Consensus 150 l~~~~~~~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~----------~~i~i~d~~~~~~~~~~~~ 217 (289)
T cd00200 150 VASSSQDGTIKLWDLRTGKC--VATLTGHTGEVNSVAFSPDGEKLLSSSSD----------GTIKLWDLSTGKCLGTLRG 217 (289)
T ss_pred EEEEcCCCcEEEEEcccccc--ceeEecCccccceEEECCCcCEEEEecCC----------CcEEEEECCCCceecchhh
Confidence 44444 78888887764332 2333332 367788999988777776542 5688999887777665532
Q ss_pred CCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEecccc-CeEEEEEC-
Q 001387 763 DTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFN-GKLLAAIN- 840 (1088)
Q Consensus 763 ~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~-g~Lv~~~g- 840 (1088)
.+ ..+.++ .+..+ ..+++.|. ..|++++|++...+...... ...+++++++-.. +.++++.+
T Consensus 218 ~~-~~i~~~---~~~~~-~~~~~~~~----------~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~ 281 (289)
T cd00200 218 HE-NGVNSV---AFSPD-GYLLASGS----------EDGTIRVWDLRTGECVQTLS-GHTNSVTSLAWSPDGKRLASGSA 281 (289)
T ss_pred cC-CceEEE---EEcCC-CcEEEEEc----------CCCcEEEEEcCCceeEEEcc-ccCCcEEEEEECCCCCEEEEecC
Confidence 22 234443 33332 45555443 35899999987544333222 4566788877554 23333333
Q ss_pred -CEEEEE
Q 001387 841 -QKIQLY 846 (1088)
Q Consensus 841 -~~l~v~ 846 (1088)
+.+.+|
T Consensus 282 d~~i~iw 288 (289)
T cd00200 282 DGTIRIW 288 (289)
T ss_pred CCeEEec
Confidence 345543
No 19
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.68 E-value=0.22 Score=58.50 Aligned_cols=194 Identities=13% Similarity=0.152 Sum_probs=111.5
Q ss_pred cCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCC
Q 001387 715 PRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPE 794 (1088)
Q Consensus 715 p~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~ 794 (1088)
...++|+|+....+.++.+ +.||+.|..++-++-+ |.++-. .+..++|.. ....++..+
T Consensus 353 i~~l~YSpDgq~iaTG~eD----------gKVKvWn~~SgfC~vT--FteHts--~Vt~v~f~~--~g~~llssS----- 411 (893)
T KOG0291|consen 353 ITSLAYSPDGQLIATGAED----------GKVKVWNTQSGFCFVT--FTEHTS--GVTAVQFTA--RGNVLLSSS----- 411 (893)
T ss_pred eeeEEECCCCcEEEeccCC----------CcEEEEeccCceEEEE--eccCCC--ceEEEEEEe--cCCEEEEee-----
Confidence 3468899999888877654 4788888766544443 333322 233334443 223344443
Q ss_pred CCCCcceEEEEEEEeCCeEEEEEEEEecCceeEecc-c--cCeEEEEECCE-EEEEEeeeccCcccccccccccccceEE
Q 001387 795 ENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNA-F--NGKLLAAINQK-IQLYKWMLRDDGTRELQSECGHHGHILA 870 (1088)
Q Consensus 795 e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~-~--~g~Lv~~~g~~-l~v~~~~~~~~~~~~L~~~~~~~~~~~~ 870 (1088)
--|++-.|++++.+-= -....+.|+..-|- + .|-|++|-++. .-+|-|+.+. | +.|--...+.+++..
T Consensus 412 ----LDGtVRAwDlkRYrNf--RTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qT-G-qllDiLsGHEgPVs~ 483 (893)
T KOG0291|consen 412 ----LDGTVRAWDLKRYRNF--RTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT-G-QLLDILSGHEGPVSG 483 (893)
T ss_pred ----cCCeEEeeeeccccee--eeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeec-C-eeeehhcCCCCccee
Confidence 3489999998754311 11223444443322 2 24555554444 3477776542 3 223334556666666
Q ss_pred EEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCc-eEEEEccCCcEEEEeeCC
Q 001387 871 LYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDD-IYLGAENNFNLFTVRKNS 940 (1088)
Q Consensus 871 ~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~-~~l~~D~~gnl~~l~~~~ 940 (1088)
.+++..++.++-|---+-|-+...-....+.+.+. ....++++.|=.++ .+.++--+|+|.++....
T Consensus 484 l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~---i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 484 LSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE---IRSDVLAVSFRPDGKELAVATLDGQITFFDIKE 551 (893)
T ss_pred eEEccccCeEEeccccceEEEEEeeccCceeeeEe---eccceeEEEEcCCCCeEEEEEecceEEEEEhhh
Confidence 67888888877777777666543322333444332 23456677776554 578888999999998654
No 20
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.60 E-value=0.28 Score=57.59 Aligned_cols=225 Identities=16% Similarity=0.251 Sum_probs=136.0
Q ss_pred CCeEEEEeCCeEEEEEEcCCCC-----eEEEEEeCCC---ccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCC
Q 001387 682 PDSLAIAKEGELTIGTIDDIQK-----LHIRSIPLGE---HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQT 753 (1088)
Q Consensus 682 ~~~l~~~~~~~l~i~~l~~~~~-----~~~~~i~l~~---tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t 753 (1088)
++.+++.+++.+....++...+ ..++.+.+++ .+|.++++.+.. ++++.. ..++++.+.+|
T Consensus 335 ~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~--~~~Sga---------~~SikiWn~~t 403 (888)
T KOG0306|consen 335 ENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSI--LLASGA---------GESIKIWNRDT 403 (888)
T ss_pred ceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCce--eeeecC---------CCcEEEEEccC
Confidence 3467778899999999887322 2334455542 466677665533 333322 25799999998
Q ss_pred ceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCe-EEEEEEEEecCceeEeccc-
Q 001387 754 FEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGK-LQLIAEKETKGAVYSLNAF- 831 (1088)
Q Consensus 754 ~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~k-l~~~~~~~~~g~v~ai~~~- 831 (1088)
.+.+-+++-. .+.|.+.+ .+..|+++|+ ..|.+.+|++.... ++.+- .+.|++-+|+..
T Consensus 404 ~kciRTi~~~---y~l~~~Fv----pgd~~Iv~G~----------k~Gel~vfdlaS~~l~Eti~--AHdgaIWsi~~~p 464 (888)
T KOG0306|consen 404 LKCIRTITCG---YILASKFV----PGDRYIVLGT----------KNGELQVFDLASASLVETIR--AHDGAIWSISLSP 464 (888)
T ss_pred cceeEEeccc---cEEEEEec----CCCceEEEec----------cCCceEEEEeehhhhhhhhh--ccccceeeeeecC
Confidence 8888777654 66655544 2578999998 56899999987433 22222 568888887766
Q ss_pred --cCeEEEEECCEEEEEEeeeccC--cc-cccccc-----cccccceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeE
Q 001387 832 --NGKLLAAINQKIQLYKWMLRDD--GT-RELQSE-----CGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAI 901 (1088)
Q Consensus 832 --~g~Lv~~~g~~l~v~~~~~~~~--~~-~~L~~~-----~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l 901 (1088)
.|.+.++..+++.+|++..-.+ |. ++.... -...-...+++++..+.++.||=+-.-+.++-.+.-.-.+
T Consensus 465 D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFfl 544 (888)
T KOG0306|consen 465 DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFL 544 (888)
T ss_pred CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeee
Confidence 3456677778899888753222 22 222111 1111223444555557788888777777777655433344
Q ss_pred EEEeccCCCceeEEEEEeeCc-eEEEEccCCcEEEEeeC
Q 001387 902 EERARDYNANWMSAVEILDDD-IYLGAENNFNLFTVRKN 939 (1088)
Q Consensus 902 ~~~~~D~~~~~v~~~~~l~~~-~~l~~D~~gnl~~l~~~ 939 (1088)
.+-+ +...|.+++.--+. .++.+-.+.|+-+.-.+
T Consensus 545 sLYG---HkLPV~smDIS~DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 545 SLYG---HKLPVLSMDISPDSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred eecc---cccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence 4433 55677777654333 35555555665555443
No 21
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.53 E-value=0.27 Score=55.80 Aligned_cols=296 Identities=19% Similarity=0.220 Sum_probs=165.7
Q ss_pred EEEEEeCC----CcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEecCC----ceEE-Ee--cC-CcEEE
Q 001387 595 YLLCALGD----GHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDR----PTVI-YS--SN-KKLLY 662 (1088)
Q Consensus 595 ~L~vgl~~----G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~----p~~i-~~--~~-~~~~~ 662 (1088)
.++||+.+ |-+..|++|..++.|........+..|--|.. ..+...+++..+. ..+. +. .+ +.+..
T Consensus 1 ~~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~--~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~ 78 (345)
T PF10282_consen 1 TLYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAV--SPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTL 78 (345)
T ss_dssp EEEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE---TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEE
T ss_pred CEEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEE--EeCCCEEEEEEccccCCCCEEEEEECCCcceeEE
Confidence 36888877 79999999998888877666556666655532 2345677777653 2332 21 12 44532
Q ss_pred eecccccceeeeccCCCCCCCeEEEEe--CCeEEEEEEcCCCCeEEE--EE-----------eCCCccCeEEEecCCCEE
Q 001387 663 SNVNLKEVSHMCPFNSAAFPDSLAIAK--EGELTIGTIDDIQKLHIR--SI-----------PLGEHPRRICHQEQSRTF 727 (1088)
Q Consensus 663 ~~l~~~~i~~~~~f~~~~~~~~l~~~~--~~~l~i~~l~~~~~~~~~--~i-----------~l~~tp~~i~y~~~~~~~ 727 (1088)
..-....-...|.+.-......++.+. ++.+.+..++....+... .+ .-+..|+.+.++|+.+.+
T Consensus 79 ~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v 158 (345)
T PF10282_consen 79 LNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFV 158 (345)
T ss_dssp EEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEE
T ss_pred eeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEE
Confidence 111000000111111111122344443 788999999876433221 22 123457889999998887
Q ss_pred EEEEeecCCCcCcceeEEEEEEe--CCC--ceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEE
Q 001387 728 AICSLKNQSCAEESEMHFVRLLD--DQT--FEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRI 803 (1088)
Q Consensus 728 ~v~~~~~~~~~~~~~~s~l~lid--~~t--~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri 803 (1088)
.|..... -.|.+++ ..+ .+....+.++++.-+-.+. |..+++.+++++- ..+.|
T Consensus 159 ~v~dlG~---------D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~---f~pdg~~~Yv~~e----------~s~~v 216 (345)
T PF10282_consen 159 YVPDLGA---------DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLA---FSPDGKYAYVVNE----------LSNTV 216 (345)
T ss_dssp EEEETTT---------TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEE---E-TTSSEEEEEET----------TTTEE
T ss_pred EEEecCC---------CEEEEEEEeCCCceEEEeeccccccCCCCcEEE---EcCCcCEEEEecC----------CCCcE
Confidence 7764332 2344443 333 3345667788877776554 3444455555442 46799
Q ss_pred EEEEEe--CCeEEEEEEEEec-----C--ceeEeccc-cC-eEEEEEC--CEEEEEEeeeccCccccccccccccc-ceE
Q 001387 804 LVFIVE--DGKLQLIAEKETK-----G--AVYSLNAF-NG-KLLAAIN--QKIQLYKWMLRDDGTRELQSECGHHG-HIL 869 (1088)
Q Consensus 804 ~v~~i~--~~kl~~~~~~~~~-----g--~v~ai~~~-~g-~Lv~~~g--~~l~v~~~~~~~~~~~~L~~~~~~~~-~~~ 869 (1088)
.+|++. +++++.+.....- + ...+|.-- +| +|+++.. +.|.+|+++. ++|..++.. ...+ -..
T Consensus 217 ~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~-~~g~l~~~~--~~~~~G~~ 293 (345)
T PF10282_consen 217 SVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP-ATGTLTLVQ--TVPTGGKF 293 (345)
T ss_dssp EEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT-TTTTEEEEE--EEEESSSS
T ss_pred EEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec-CCCceEEEE--EEeCCCCC
Confidence 999999 6678777665532 2 23344433 34 5666653 6799999842 233333322 2222 112
Q ss_pred EEEE--EEeCCEEEEEecc-ccEEEEEEeccCCeEEEEeccCCCceeEEEE
Q 001387 870 ALYV--QTRGDFIVVGDLM-KSISLLIYKHEEGAIEERARDYNANWMSAVE 917 (1088)
Q Consensus 870 ~~~l--~~~~~~I~vgD~~-~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~ 917 (1088)
|..+ +-.|++++|+... +.|.+++.+.+.++|..+++....-..+|+.
T Consensus 294 Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~ 344 (345)
T PF10282_consen 294 PRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIV 344 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEE
T ss_pred ccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEe
Confidence 4444 4478899998754 4688888888888998887643333333443
No 22
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.53 E-value=0.13 Score=55.66 Aligned_cols=219 Identities=18% Similarity=0.170 Sum_probs=121.3
Q ss_pred eEEEEe-CCeEEEEEEcCCCCeEEEEEeCCC-ccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEE
Q 001387 684 SLAIAK-EGELTIGTIDDIQKLHIRSIPLGE-HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYP 761 (1088)
Q Consensus 684 ~l~~~~-~~~l~i~~l~~~~~~~~~~i~l~~-tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~ 761 (1088)
.++... ++.+.+..++... ..+.+.... ....+.+.+..+.+++++.+ +.++++|..+.+.+..+.
T Consensus 23 ~l~~~~~~g~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~----------~~i~i~~~~~~~~~~~~~ 90 (289)
T cd00200 23 LLATGSGDGTIKVWDLETGE--LLRTLKGHTGPVRDVAASADGTYLASGSSD----------KTIRLWDLETGECVRTLT 90 (289)
T ss_pred EEEEeecCcEEEEEEeeCCC--cEEEEecCCcceeEEEECCCCCEEEEEcCC----------CeEEEEEcCcccceEEEe
Confidence 344444 6778887776543 222333322 33478888887666666532 578888887765555544
Q ss_pred CCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEecccc-CeE-EEEE
Q 001387 762 LDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFN-GKL-LAAI 839 (1088)
Q Consensus 762 ~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~-g~L-v~~~ 839 (1088)
.. ...+.++.. .. ...+++.|. ..|.+.+|++...+...... ...+++++++... +.+ +.+.
T Consensus 91 ~~-~~~i~~~~~---~~-~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~ 154 (289)
T cd00200 91 GH-TSYVSSVAF---SP-DGRILSSSS----------RDKTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPDGTFVASSS 154 (289)
T ss_pred cc-CCcEEEEEE---cC-CCCEEEEec----------CCCeEEEEECCCcEEEEEec-cCCCcEEEEEEcCcCCEEEEEc
Confidence 22 224555543 22 245666554 34789999987544333222 4567888887664 444 4444
Q ss_pred -CCEEEEEEeeeccCcccccccccccccceEEEEEEE--eCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEE
Q 001387 840 -NQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQT--RGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAV 916 (1088)
Q Consensus 840 -g~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~--~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~ 916 (1088)
++.+.+|++. .+ +.+........ .+.++.. .++.++++.....+.++ +....+....-+ .....+.++
T Consensus 155 ~~~~i~i~d~~---~~-~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~~~~i~i~--d~~~~~~~~~~~-~~~~~i~~~ 225 (289)
T cd00200 155 QDGTIKLWDLR---TG-KCVATLTGHTG--EVNSVAFSPDGEKLLSSSSDGTIKLW--DLSTGKCLGTLR-GHENGVNSV 225 (289)
T ss_pred CCCcEEEEEcc---cc-ccceeEecCcc--ccceEEECCCcCEEEEecCCCcEEEE--ECCCCceecchh-hcCCceEEE
Confidence 6788887753 11 11111111111 2334444 34478888876666665 433222222111 223366677
Q ss_pred EEeeCce-EEEEccCCcEEEEeeC
Q 001387 917 EILDDDI-YLGAENNFNLFTVRKN 939 (1088)
Q Consensus 917 ~~l~~~~-~l~~D~~gnl~~l~~~ 939 (1088)
.+..++. +++++.+|.+.++...
T Consensus 226 ~~~~~~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 226 AFSPDGYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred EEcCCCcEEEEEcCCCcEEEEEcC
Confidence 7766554 4566669999999875
No 23
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.37 E-value=0.41 Score=54.08 Aligned_cols=270 Identities=16% Similarity=0.145 Sum_probs=141.2
Q ss_pred CCCeEEEEEEcC-cEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECC-CCCceEEecCCCCcCce
Q 001387 506 GGGHLVYLEIGD-GILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLP-DLNLITKEHLGGEIIPR 583 (1088)
Q Consensus 506 ~~~~l~~~~~~~-~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~-~l~~~~~~~l~~~~~p~ 583 (1088)
.++.+..++++. +++..+...+....++.++++| ...+++++.+.++.+.+|++. +.++......+....|.
T Consensus 10 ~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~sp------d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 10 ESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISP------DKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred CCCCEEEEEECCCCceeeeeEEecCCCCccEEECC------CCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 356666777753 5666665555555677787765 257888888888899999986 32221111121112455
Q ss_pred eEEeeeecCceEEEEE-eCCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEecCCceEE-EecCCcEE
Q 001387 584 SVLLCAFEGISYLLCA-LGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI-YSSNKKLL 661 (1088)
Q Consensus 584 si~~~~~~~~~~L~vg-l~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~i-~~~~~~~~ 661 (1088)
.+.+.+ +..+|+++ ..+|.+..|.++.. +.+.. ++. .+. + ...|.-+ +..+++
T Consensus 84 ~i~~~~--~g~~l~v~~~~~~~v~v~~~~~~-g~~~~---------~~~--~~~--~-------~~~~~~~~~~p~g~-- 138 (330)
T PRK11028 84 HISTDH--QGRFLFSASYNANCVSVSPLDKD-GIPVA---------PIQ--IIE--G-------LEGCHSANIDPDNR-- 138 (330)
T ss_pred EEEECC--CCCEEEEEEcCCCeEEEEEECCC-CCCCC---------cee--ecc--C-------CCcccEeEeCCCCC--
Confidence 554442 33455554 45888888887632 21110 000 000 0 0011110 011111
Q ss_pred EeecccccceeeeccCCCCCCCeEEEEe--CCeEEEEEEcCCCCe-----EEEEEeCCCccCeEEEecCCCEEEEEEeec
Q 001387 662 YSNVNLKEVSHMCPFNSAAFPDSLAIAK--EGELTIGTIDDIQKL-----HIRSIPLGEHPRRICHQEQSRTFAICSLKN 734 (1088)
Q Consensus 662 ~~~l~~~~i~~~~~f~~~~~~~~l~~~~--~~~l~i~~l~~~~~~-----~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~ 734 (1088)
.++.++ .+.+.+..++....+ ...+++.+..|+.++++|+.+.+.|+...
T Consensus 139 ----------------------~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~- 195 (330)
T PRK11028 139 ----------------------TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL- 195 (330)
T ss_pred ----------------------EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-
Confidence 111111 355666666542222 12346678899999999998887777532
Q ss_pred CCCcCcceeEEEEEEeCC----CceEEEEEEC-CC---CceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEE
Q 001387 735 QSCAEESEMHFVRLLDDQ----TFEFISTYPL-DT---FEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVF 806 (1088)
Q Consensus 735 ~~~~~~~~~s~l~lid~~----t~~~i~~~~~-~~---~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~ 806 (1088)
...|.+++-+ +++.+..+.. ++ ++. .. ..+.+..+ .+++.|+.. ..+.|.+|
T Consensus 196 --------~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~-~~i~~~pd-g~~lyv~~~---------~~~~I~v~ 255 (330)
T PRK11028 196 --------NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTR-WA-ADIHITPD-GRHLYACDR---------TASLISVF 255 (330)
T ss_pred --------CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCc-cc-eeEEECCC-CCEEEEecC---------CCCeEEEE
Confidence 2455555432 3444554432 11 111 11 12334433 456666531 34689999
Q ss_pred EEeC--CeEEEEEEEEecCceeEeccc-cC-eEEEEE--CCEEEEEEee
Q 001387 807 IVED--GKLQLIAEKETKGAVYSLNAF-NG-KLLAAI--NQKIQLYKWM 849 (1088)
Q Consensus 807 ~i~~--~kl~~~~~~~~~g~v~ai~~~-~g-~Lv~~~--g~~l~v~~~~ 849 (1088)
++.. .+++++........+..+.-- +| +|+++. .++|.+|+++
T Consensus 256 ~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 256 SVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 9973 467777765554344444422 34 566554 3589998875
No 24
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.30 E-value=0.084 Score=55.27 Aligned_cols=267 Identities=16% Similarity=0.239 Sum_probs=141.7
Q ss_pred CceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCC-CceE--EecCCCCcCceeEEeeeecCceEEEEEeCCCcE
Q 001387 529 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDL-NLIT--KEHLGGEIIPRSVLLCAFEGISYLLCALGDGHL 605 (1088)
Q Consensus 529 ~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l-~~~~--~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l 605 (1088)
+..|++|+++|. ....++.|.| ||.+++|.+.+- ..+. ...+. .++=+++-. ++...++.|.-||.+
T Consensus 27 ~DsIS~l~FSP~-----~~~~~~A~SW-D~tVR~wevq~~g~~~~ka~~~~~--~PvL~v~Ws--ddgskVf~g~~Dk~~ 96 (347)
T KOG0647|consen 27 EDSISALAFSPQ-----ADNLLAAGSW-DGTVRIWEVQNSGQLVPKAQQSHD--GPVLDVCWS--DDGSKVFSGGCDKQA 96 (347)
T ss_pred ccchheeEeccc-----cCceEEeccc-CCceEEEEEecCCcccchhhhccC--CCeEEEEEc--cCCceEEeeccCCce
Confidence 456899999872 2567779999 999999999752 2221 12222 222233222 355789999999999
Q ss_pred EEEEEecCCCccccceeeecCccceeEEEEEeCCc-eEEEEecCCceEEEecCCcEEEeeccc-ccceeee-c---cCCC
Q 001387 606 LNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNT-THVFAASDRPTVIYSSNKKLLYSNVNL-KEVSHMC-P---FNSA 679 (1088)
Q Consensus 606 ~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~-~~v~~~~~~p~~i~~~~~~~~~~~l~~-~~i~~~~-~---f~~~ 679 (1088)
-.|.+... ++ ..+-.-..||+-..+ +.+. .-.+++|+ .+..++|..... .++..+- | +...
T Consensus 97 k~wDL~S~--Q~---~~v~~Hd~pvkt~~w-v~~~~~~cl~TGS-------WDKTlKfWD~R~~~pv~t~~LPeRvYa~D 163 (347)
T KOG0647|consen 97 KLWDLASG--QV---SQVAAHDAPVKTCHW-VPGMNYQCLVTGS-------WDKTLKFWDTRSSNPVATLQLPERVYAAD 163 (347)
T ss_pred EEEEccCC--Ce---eeeeecccceeEEEE-ecCCCcceeEecc-------cccceeecccCCCCeeeeeeccceeeehh
Confidence 98877542 21 122223457665444 1222 12333332 133344433221 1111100 0 0000
Q ss_pred C-CCCeEEEEeCCeEEEEEEcCCC-CeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCce--
Q 001387 680 A-FPDSLAIAKEGELTIGTIDDIQ-KLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFE-- 755 (1088)
Q Consensus 680 ~-~~~~l~~~~~~~l~i~~l~~~~-~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~-- 755 (1088)
- .|=.++.+.+..+.+.+|.... .+-.-.-||....|.|+-.++...++++..+- +-.++-+|+.+-+
T Consensus 164 v~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEG--------rv~iq~id~~~~~~n 235 (347)
T KOG0647|consen 164 VLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEG--------RVAIQYIDDPNPKDN 235 (347)
T ss_pred ccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecc--------eEEEEecCCCCccCc
Confidence 0 1112333458889999996543 23333446777788888888888888887653 4556666652111
Q ss_pred -EEEEEE---CCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc
Q 001387 756 -FISTYP---LDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF 831 (1088)
Q Consensus 756 -~i~~~~---~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~ 831 (1088)
+...+. . -+..|+++-.+.|.-....+.-+| +-|++-.|+-+ -+-++......+.|+++.+ |
T Consensus 236 FtFkCHR~~~~-~~~~VYaVNsi~FhP~hgtlvTaG-----------sDGtf~FWDkd-ar~kLk~s~~~~qpItcc~-f 301 (347)
T KOG0647|consen 236 FTFKCHRSTNS-VNDDVYAVNSIAFHPVHGTLVTAG-----------SDGTFSFWDKD-ARTKLKTSETHPQPITCCS-F 301 (347)
T ss_pred eeEEEeccCCC-CCCceEEecceEeecccceEEEec-----------CCceEEEecch-hhhhhhccCcCCCccceeE-e
Confidence 111111 1 122456666665543223444444 34888888654 2344455566778887755 5
Q ss_pred --cCe-EEEEEC
Q 001387 832 --NGK-LLAAIN 840 (1088)
Q Consensus 832 --~g~-Lv~~~g 840 (1088)
+|. +++|.|
T Consensus 302 n~~G~ifaYA~g 313 (347)
T KOG0647|consen 302 NRNGSIFAYALG 313 (347)
T ss_pred cCCCCEEEEEee
Confidence 344 445665
No 25
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.25 E-value=0.78 Score=54.71 Aligned_cols=144 Identities=12% Similarity=0.146 Sum_probs=88.7
Q ss_pred EEEEecCcEEEEecCCcceeeeeeCCCCCcEEEEEECC--CEEEEEECCCeEEEEEEcCcEEEEEeeccC-CceeEEEEe
Q 001387 461 LVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANA--SQVLLATGGGHLVYLEIGDGILTEVKHAQL-EYEISCLDI 537 (1088)
Q Consensus 461 ivQVt~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~~--~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l-~~~is~l~~ 537 (1088)
++=.+...+.+++..++..+.+... .+..|+++.-.+ +++.|.+.+|+++.|.+..++. +.+++. ...|+.+++
T Consensus 176 vvGs~~G~lql~Nvrt~K~v~~f~~-~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dki--l~sFk~d~g~VtslSF 252 (910)
T KOG1539|consen 176 VVGSSQGRLQLWNVRTGKVVYTFQE-FFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKI--LMSFKQDWGRVTSLSF 252 (910)
T ss_pred EEeecCCcEEEEEeccCcEEEEecc-cccceeEeccCCcceEEEEeccCceEEEEEcccCcE--EEEEEccccceeEEEe
Confidence 3334555566666665555544332 225788887653 5777777889999998865432 223334 488999998
Q ss_pred CCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEE-ecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCc
Q 001387 538 NPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITK-EHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGE 616 (1088)
Q Consensus 538 ~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~-~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~ 616 (1088)
.. .....++.|.- .|.+.+|+|++-.++.. .......++... -+.+++.|+-...|..+..|-+|..+|.
T Consensus 253 rt-----DG~p~las~~~-~G~m~~wDLe~kkl~~v~~nah~~sv~~~~---fl~~epVl~ta~~DnSlk~~vfD~~dg~ 323 (910)
T KOG1539|consen 253 RT-----DGNPLLASGRS-NGDMAFWDLEKKKLINVTRNAHYGSVTGAT---FLPGEPVLVTAGADNSLKVWVFDSGDGV 323 (910)
T ss_pred cc-----CCCeeEEeccC-CceEEEEEcCCCeeeeeeeccccCCcccce---ecCCCceEeeccCCCceeEEEeeCCCCc
Confidence 53 23567777766 89999999987444331 111111122111 2235677777778899999998866554
No 26
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.19 E-value=0.61 Score=52.32 Aligned_cols=338 Identities=14% Similarity=0.157 Sum_probs=166.9
Q ss_pred EEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecCccc
Q 001387 550 AAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQP 629 (1088)
Q Consensus 550 ~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~p 629 (1088)
+.+.+- .+.+.+|.+..-.+.-.+.+-...--+-++-+.+++.--++-|-.+|.+.+|.... ..+. |....-..-
T Consensus 215 liit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~--~~~~--k~~~aH~gg 289 (626)
T KOG2106|consen 215 LIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGT--NRIS--KQVHAHDGG 289 (626)
T ss_pred EEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCC--ceEE--eEeeecCCc
Confidence 344333 67888887765444333333210000222223454555678888999988876532 1111 111110000
Q ss_pred e-eEEEEEeCCceEEEEecCCce-EEEecC--CcEEEe--ecccccceeeeccCCCCCCCeEEEEeCCeEEEEEEcCCCC
Q 001387 630 I-TLRTFSSKNTTHVFAASDRPT-VIYSSN--KKLLYS--NVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQK 703 (1088)
Q Consensus 630 v-~l~~~~~~~~~~v~~~~~~p~-~i~~~~--~~~~~~--~l~~~~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~ 703 (1088)
| .|..+ .++-++.|.+-- ++.+++ .+++-. |-...++..+++ .-++.++-++.|.+..+.++....
T Consensus 290 v~~L~~l----r~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e----~~~di~vGTtrN~iL~Gt~~~~f~ 361 (626)
T KOG2106|consen 290 VFSLCML----RDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAE----GKGDILVGTTRNFILQGTLENGFT 361 (626)
T ss_pred eEEEEEe----cCccEeecCccceEEeccccccccccccCchhcCCeeEEec----CCCcEEEeeccceEEEeeecCCce
Confidence 0 11111 122333343322 222221 111111 111223333332 234556667899999999987533
Q ss_pred eEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceE
Q 001387 704 LHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVY 783 (1088)
Q Consensus 704 ~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~ 783 (1088)
+.+. .. ++.---++-||..+.|+.+..+ ..++|.+ .-+.+.+..++. .+.|+. |.. ...
T Consensus 362 ~~v~-gh-~delwgla~hps~~q~~T~gqd----------k~v~lW~--~~k~~wt~~~~d--~~~~~~---fhp--sg~ 420 (626)
T KOG2106|consen 362 LTVQ-GH-GDELWGLATHPSKNQLLTCGQD----------KHVRLWN--DHKLEWTKIIED--PAECAD---FHP--SGV 420 (626)
T ss_pred EEEE-ec-ccceeeEEcCCChhheeeccCc----------ceEEEcc--CCceeEEEEecC--ceeEee---ccC--cce
Confidence 2221 11 1222345667777777665433 3567776 234444433332 222322 322 238
Q ss_pred EEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc--cCeEEEE-ECCEEEEEEeeeccCccccccc
Q 001387 784 YCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF--NGKLLAA-INQKIQLYKWMLRDDGTRELQS 860 (1088)
Q Consensus 784 i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~--~g~Lv~~-~g~~l~v~~~~~~~~~~~~L~~ 860 (1088)
+++|| ..||.+++++.+..+-.++.. ..|++++..- ..+|.++ .++.|++|..+ ++ ..++.+
T Consensus 421 va~Gt----------~~G~w~V~d~e~~~lv~~~~d--~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs--~~-g~~y~r 485 (626)
T KOG2106|consen 421 VAVGT----------ATGRWFVLDTETQDLVTIHTD--NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVS--AN-GRKYSR 485 (626)
T ss_pred EEEee----------ccceEEEEecccceeEEEEec--CCceEEEEEcCCCCEEEEecCCCeEEEEEEC--CC-CcEEEE
Confidence 99999 569999999988666656654 5555555433 3466554 45788999975 23 345544
Q ss_pred ccccccceEEEEEEEe-CCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEee-------C-----------
Q 001387 861 ECGHHGHILALYVQTR-GDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILD-------D----------- 921 (1088)
Q Consensus 861 ~~~~~~~~~~~~l~~~-~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~-------~----------- 921 (1088)
...... .++++|++. ++..+++-.-+- .++-|.+..-+..--.||. .|.+..+-|. +
T Consensus 486 ~~k~~g-s~ithLDwS~Ds~~~~~~S~d~-eiLyW~~~~~~~~ts~kDv--kW~t~~c~lGF~v~g~s~~t~i~a~~rs~ 561 (626)
T KOG2106|consen 486 VGKCSG-SPITHLDWSSDSQFLVSNSGDY-EILYWKPSECKQITSVKDV--KWATYTCTLGFEVFGGSDGTDINAVARSH 561 (626)
T ss_pred eeeecC-ceeEEeeecCCCceEEeccCce-EEEEEccccCcccceecce--eeeeeEEEEEEEEecccCCchHHHhhhhh
Confidence 333333 566777654 333334333222 2444655332222224553 3444332221 1
Q ss_pred --ceEEEEccCCcEEEEeeCC
Q 001387 922 --DIYLGAENNFNLFTVRKNS 940 (1088)
Q Consensus 922 --~~~l~~D~~gnl~~l~~~~ 940 (1088)
+....+|.+|.+++|+|+=
T Consensus 562 ~~~~lA~gdd~g~v~lf~yPc 582 (626)
T KOG2106|consen 562 CEKLLASGDDFGKVHLFSYPC 582 (626)
T ss_pred hhhhhhccccCceEEEEcccc
Confidence 1256789999999999974
No 27
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.15 E-value=0.97 Score=53.97 Aligned_cols=250 Identities=15% Similarity=0.189 Sum_probs=135.9
Q ss_pred ccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecC
Q 001387 547 SQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLG 626 (1088)
Q Consensus 547 ~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG 626 (1088)
+.+.+..+- +++.++|+...+.+++.. ...|..|..+. ..+.+++++.++ .+..|.-.. .+.. ....+
T Consensus 46 ~~~~vtt~v-gksfqvYd~~kl~ll~vs----~~lp~~I~ala-s~~~~vy~A~g~-~i~~~~rgk---~i~~--~~~~~ 113 (910)
T KOG1539|consen 46 STFYVTTCV-GKSFQVYDVNKLNLLFVS----KPLPDKITALA-SDKDYVYVASGN-KIYAYARGK---HIRH--TTLLH 113 (910)
T ss_pred ceEEEEEec-CceEEEEeccceEEEEec----CCCCCceEEEE-ecCceEEEecCc-EEEEEEccc---eEEE--Eeccc
Confidence 445555555 899999999988887643 12455553222 245788888765 233443211 0100 11111
Q ss_pred ccce-eEEEEEeCCceEEEEecCCc-eEEEecCC-----c--EEEeecccccceeeeccCCCCCCC-eEEEEeCCeEEEE
Q 001387 627 TQPI-TLRTFSSKNTTHVFAASDRP-TVIYSSNK-----K--LLYSNVNLKEVSHMCPFNSAAFPD-SLAIAKEGELTIG 696 (1088)
Q Consensus 627 ~~pv-~l~~~~~~~~~~v~~~~~~p-~~i~~~~~-----~--~~~~~l~~~~i~~~~~f~~~~~~~-~l~~~~~~~l~i~ 696 (1088)
..-| .|.+|. ..++++-.+- ..++.... . ..+.+...+.+.+++.-+ .+-+ -++..+++.|.|-
T Consensus 114 ~a~v~~l~~fG----e~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~HP~--TYLNKIvvGs~~G~lql~ 187 (910)
T KOG1539|consen 114 GAKVHLLLPFG----EHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLHPS--TYLNKIVVGSSQGRLQLW 187 (910)
T ss_pred cceEEEEeeec----ceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEecch--hheeeEEEeecCCcEEEE
Confidence 1222 233331 2333332222 22221111 1 233344334344444322 2323 3445779999998
Q ss_pred EEcCCCCeEE-EEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEE
Q 001387 697 TIDDIQKLHI-RSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCS 775 (1088)
Q Consensus 697 ~l~~~~~~~~-~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~ 775 (1088)
++....-.+. +..+ ...+.+.-.|.....+|++. .+.|-+++-+..+++-+|+-+. -.+ .++.
T Consensus 188 Nvrt~K~v~~f~~~~--s~IT~ieqsPaLDVVaiG~~----------~G~ViifNlK~dkil~sFk~d~-g~V---tslS 251 (910)
T KOG1539|consen 188 NVRTGKVVYTFQEFF--SRITAIEQSPALDVVAIGLE----------NGTVIIFNLKFDKILMSFKQDW-GRV---TSLS 251 (910)
T ss_pred EeccCcEEEEecccc--cceeEeccCCcceEEEEecc----------CceEEEEEcccCcEEEEEEccc-cce---eEEE
Confidence 8876542221 1111 22333444566666666653 3678888888888888777663 333 3456
Q ss_pred EcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccccCe-EEEEEC
Q 001387 776 FSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGK-LLAAIN 840 (1088)
Q Consensus 776 ~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~g~-Lv~~~g 840 (1088)
|..++.+.+++|+ +.|.+.+|+++++|+.-+-...+.|.|+......|. ++++.|
T Consensus 252 FrtDG~p~las~~----------~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~ 307 (910)
T KOG1539|consen 252 FRTDGNPLLASGR----------SNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAG 307 (910)
T ss_pred eccCCCeeEEecc----------CCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeecc
Confidence 7778899999987 568999999998887766665666666665555442 444333
No 28
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.14 E-value=0.091 Score=58.04 Aligned_cols=199 Identities=16% Similarity=0.122 Sum_probs=120.5
Q ss_pred ceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEecCCceEEEecC--Cc
Q 001387 582 PRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSN--KK 659 (1088)
Q Consensus 582 p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~i~~~~--~~ 659 (1088)
..|+-+.+ ..+.|+++--||.+-.|.+|..... ......+-..|+.=..|..+|.+.||..|.++++...+- .+
T Consensus 216 I~sv~FHp--~~plllvaG~d~~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 216 ITSVQFHP--TAPLLLVAGLDGTLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred ceEEEecC--CCceEEEecCCCcEEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 34554442 4577777777999999999865432 122345556676544454466678888899998876652 22
Q ss_pred E-EEeecccccceeeeccCCCCCCCeEEEEeCCeEEEEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCc
Q 001387 660 L-LYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCA 738 (1088)
Q Consensus 660 ~-~~~~l~~~~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~ 738 (1088)
+ .+.|+...+-.++-.|-...+.+ ++.+.++.=.|--+....+-.+-++.+.+..+-++++.+++.+++++..
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~----- 365 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGT----- 365 (514)
T ss_pred cccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCC-----
Confidence 2 23333332222233332222333 4555544434445555555667778888889999999888777666532
Q ss_pred CcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEe
Q 001387 739 EESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE 809 (1088)
Q Consensus 739 ~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~ 809 (1088)
+.|...|-.+..++.++.=+-.-+.+++|.- -+..|+|+|+ .+|-+-+|+..
T Consensus 366 -----GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S----~ng~ylA~GS----------~~GiVNIYd~~ 417 (514)
T KOG2055|consen 366 -----GEVYVWNLRQNSCLHRFVDDGSVHGTSLCIS----LNGSYLATGS----------DSGIVNIYDGN 417 (514)
T ss_pred -----ceEEEEecCCcceEEEEeecCccceeeeeec----CCCceEEecc----------CcceEEEeccc
Confidence 4567777766667766665555566666542 2356999997 45777777644
No 29
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.09 E-value=0.84 Score=52.11 Aligned_cols=320 Identities=15% Similarity=0.171 Sum_probs=147.4
Q ss_pred cCcEEEEecCCcceeeeeeCCCCCcEEEEE-ECCCEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCC
Q 001387 466 SGSVRLVSSTSRELRNEWKSPPGYSVNVAT-ANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENP 544 (1088)
Q Consensus 466 ~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~-~~~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~ 544 (1088)
..++.+++.++.+.+.++....+..+..+. -++.++.++..++.+..+++..++ .+.+.+.....-++++++
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~--~v~~i~~G~~~~~i~~s~----- 87 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK--VVATIKVGGNPRGIAVSP----- 87 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS--EEEEEE-SSEEEEEEE-------
T ss_pred CCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc--EEEEEecCCCcceEEEcC-----
Confidence 367888888876666666432211122222 236788888777887776665543 233344555666777753
Q ss_pred CCccEEEEEEecCCEEEEEECCCCCceEEecCC---CC-cCceeEEeeeecCceEEEEEeC-CCcEEEEEEecCCCcccc
Q 001387 545 SYSQIAAVGMWTDISVRIFSLPDLNLITKEHLG---GE-IIPRSVLLCAFEGISYLLCALG-DGHLLNFLLNMKTGELTD 619 (1088)
Q Consensus 545 ~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~---~~-~~p~si~~~~~~~~~~L~vgl~-~G~l~~y~~~~~~~~l~~ 619 (1088)
.+.+++++.|.++.+.+++..+++++..-+.. .+ ..++-..+.....++..++.+. .|.+... +..+..-..
T Consensus 88 -DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vV--dy~d~~~~~ 164 (369)
T PF02239_consen 88 -DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVV--DYSDPKNLK 164 (369)
T ss_dssp -TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEE--ETTTSSCEE
T ss_pred -CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEE--Eeccccccc
Confidence 36799999887999999999998887543221 11 1233333343344565555555 4766544 322211011
Q ss_pred ceeeecCccceeEEEEEeCCceEEEEe-cCCceEEEec--CCcEEE-eecccc--cceeeeccCCCCCCCeEEEEe--CC
Q 001387 620 RKKVSLGTQPITLRTFSSKNTTHVFAA-SDRPTVIYSS--NKKLLY-SNVNLK--EVSHMCPFNSAAFPDSLAIAK--EG 691 (1088)
Q Consensus 620 ~~~~~lG~~pv~l~~~~~~~~~~v~~~-~~~p~~i~~~--~~~~~~-~~l~~~--~i~~~~~f~~~~~~~~l~~~~--~~ 691 (1088)
.+....|..|--.. + ..+...+++. .....+...+ .+++.. .+.... +.. .+.|..+.+ +-+..+ .+
T Consensus 165 ~~~i~~g~~~~D~~-~-dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~-~~~~php~~--g~vw~~~~~~ 239 (369)
T PF02239_consen 165 VTTIKVGRFPHDGG-F-DPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGP-GANFPHPGF--GPVWATSGLG 239 (369)
T ss_dssp EEEEE--TTEEEEE-E--TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETT-EEEEEETTT--EEEEEEEBSS
T ss_pred eeeecccccccccc-c-CcccceeeecccccceeEEEeeccceEEEEeeccccccccc-cccccCCCc--ceEEeecccc
Confidence 12233444442211 1 1122233331 1122222221 222221 111000 000 111111111 222222 22
Q ss_pred eEEEEEEcCC-------CCe-EEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECC
Q 001387 692 ELTIGTIDDI-------QKL-HIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD 763 (1088)
Q Consensus 692 ~l~i~~l~~~-------~~~-~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~ 763 (1088)
...+..+... ..| .+++|++.+.|..+.-||+++.+.|...-+. ....|.++|.++++++.++...
T Consensus 240 ~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~------~~~~v~viD~~tl~~~~~i~~~ 313 (369)
T PF02239_consen 240 YFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNP------DADTVQVIDKKTLKVVKTITPG 313 (369)
T ss_dssp SSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-S------SHT-EEEEECCGTEEEE-HHHH
T ss_pred ceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCC------CCceEEEEECcCcceeEEEecc
Confidence 3333333222 234 7899999999988999999998877633221 1468999999999888766544
Q ss_pred CCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEE
Q 001387 764 TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKE 820 (1088)
Q Consensus 764 ~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~ 820 (1088)
++-.+. -.+|..++++.++ ..- ...|+|.+|+-.. ++++....
T Consensus 314 ~~~~~~---h~ef~~dG~~v~v-S~~--------~~~~~i~v~D~~T--l~~~~~i~ 356 (369)
T PF02239_consen 314 PGKRVV---HMEFNPDGKEVWV-SVW--------DGNGAIVVYDAKT--LKEKKRIP 356 (369)
T ss_dssp HT--EE---EEEE-TTSSEEEE-EEE----------TTEEEEEETTT--TEEEEEEE
T ss_pred CCCcEe---ccEECCCCCEEEE-EEe--------cCCCEEEEEECCC--cEEEEEEE
Confidence 443333 3466766655444 221 1345899997543 44444443
No 30
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.07 E-value=0.63 Score=50.43 Aligned_cols=279 Identities=21% Similarity=0.278 Sum_probs=143.6
Q ss_pred cEEEEEEec---CCEEEEEECCC--CCceEEecCCCCcCceeEEeeeecCceEEEEEeC---CCcEEEEEEecCCCcccc
Q 001387 548 QIAAVGMWT---DISVRIFSLPD--LNLITKEHLGGEIIPRSVLLCAFEGISYLLCALG---DGHLLNFLLNMKTGELTD 619 (1088)
Q Consensus 548 ~~~~vg~w~---~~~i~i~~l~~--l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~---~G~l~~y~~~~~~~~l~~ 619 (1088)
..+.||++. +.-|+.|.+.. -++-..+.......|.=+.+.+ ++.+|+++-+ .|.+..|++|+.+|.|..
T Consensus 3 ~~~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~--~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ 80 (346)
T COG2706 3 QTVYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNP--DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTF 80 (346)
T ss_pred eEEEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECC--CCCEEEEEEecCCcCcEEEEEEcCCCCeEEE
Confidence 457788886 66799999862 1111111111112343343332 3445666554 588999999998888877
Q ss_pred ceeeec-CccceeEEEEEeCCceEEEEecCCc--eEEEe--cCCcEEEe-ec---ccc--cceeeec-cCCCC-CCCe--
Q 001387 620 RKKVSL-GTQPITLRTFSSKNTTHVFAASDRP--TVIYS--SNKKLLYS-NV---NLK--EVSHMCP-FNSAA-FPDS-- 684 (1088)
Q Consensus 620 ~~~~~l-G~~pv~l~~~~~~~~~~v~~~~~~p--~~i~~--~~~~~~~~-~l---~~~--~i~~~~~-f~~~~-~~~~-- 684 (1088)
.....+ |..|+.+. +. .....||+..=.. .-++. .+|.+.-. .+ ... .....+| -|... .|++
T Consensus 81 ln~~~~~g~~p~yvs-vd-~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~ 158 (346)
T COG2706 81 LNRQTLPGSPPCYVS-VD-EDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRY 158 (346)
T ss_pred eeccccCCCCCeEEE-EC-CCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCE
Confidence 654443 44455443 21 2234555543111 11111 12222100 00 000 0011111 11111 2343
Q ss_pred EEEEe--CCeEEEEEEcCCC--CeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEE--eC--CCceE
Q 001387 685 LAIAK--EGELTIGTIDDIQ--KLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLL--DD--QTFEF 756 (1088)
Q Consensus 685 l~~~~--~~~l~i~~l~~~~--~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~li--d~--~t~~~ 756 (1088)
++.++ .+++.+..+++.. ....-.++=|.-||.|+|||+.+...+++-= .+.|.++ |+ ..++.
T Consensus 159 l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL---------~stV~v~~y~~~~g~~~~ 229 (346)
T COG2706 159 LVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNEL---------NSTVDVLEYNPAVGKFEE 229 (346)
T ss_pred EEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEecc---------CCEEEEEEEcCCCceEEE
Confidence 44444 6888888888432 2333455678899999999999977666522 2344443 33 22334
Q ss_pred EEEEE-CCCC-ceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEe--CCeEEEEEEEEecCc-eeEeccc
Q 001387 757 ISTYP-LDTF-EYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE--DGKLQLIAEKETKGA-VYSLNAF 831 (1088)
Q Consensus 757 i~~~~-~~~~-E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~--~~kl~~~~~~~~~g~-v~ai~~~ 831 (1088)
+..+. ++++ .--.....+.+..+ .+|+.+.- + +-+ .|-+|.+. .++|+++......|- +....--
T Consensus 230 lQ~i~tlP~dF~g~~~~aaIhis~d-GrFLYasN---R-g~d-----sI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~ 299 (346)
T COG2706 230 LQTIDTLPEDFTGTNWAAAIHISPD-GRFLYASN---R-GHD-----SIAVFSVDPDGGKLELVGITPTEGQFPRDFNIN 299 (346)
T ss_pred eeeeccCccccCCCCceeEEEECCC-CCEEEEec---C-CCC-----eEEEEEEcCCCCEEEEEEEeccCCcCCccceeC
Confidence 44332 2211 11122333445543 45666542 1 111 78899998 468999999988886 5543322
Q ss_pred -cCeEEEEECC---EEEEEEee
Q 001387 832 -NGKLLAAINQ---KIQLYKWM 849 (1088)
Q Consensus 832 -~g~Lv~~~g~---~l~v~~~~ 849 (1088)
.|+++++.++ .+.+|+.+
T Consensus 300 ~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 300 PSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCCCEEEEEccCCCcEEEEEEc
Confidence 3455555553 58899875
No 31
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.02 E-value=0.29 Score=58.79 Aligned_cols=73 Identities=22% Similarity=0.250 Sum_probs=59.3
Q ss_pred ccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCC
Q 001387 714 HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLP 793 (1088)
Q Consensus 714 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~ 793 (1088)
-..++++||....+++.+.++ +|+++++++|+....+..+..+...|.+.|. . ...|||-||
T Consensus 190 i~~~~aW~Pk~g~la~~~~d~----------~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~ws--P-nG~YiAAs~----- 251 (933)
T KOG1274|consen 190 ICTRLAWHPKGGTLAVPPVDN----------TVKVYSRKGWELQFKLRDKLSSSKFSDLQWS--P-NGKYIAAST----- 251 (933)
T ss_pred eeeeeeecCCCCeEEeeccCC----------eEEEEccCCceeheeecccccccceEEEEEc--C-CCcEEeeec-----
Confidence 345788999999999998875 8999999999998888777777766666663 2 378999887
Q ss_pred CCCCCcceEEEEEEEe
Q 001387 794 EENEPTKGRILVFIVE 809 (1088)
Q Consensus 794 ~e~~~~~Gri~v~~i~ 809 (1088)
..|.|.||+++
T Consensus 252 -----~~g~I~vWnv~ 262 (933)
T KOG1274|consen 252 -----LDGQILVWNVD 262 (933)
T ss_pred -----cCCcEEEEecc
Confidence 56899999987
No 32
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.84 E-value=0.61 Score=52.18 Aligned_cols=272 Identities=13% Similarity=0.142 Sum_probs=153.2
Q ss_pred ceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEE-ecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEE
Q 001387 530 YEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITK-EHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNF 608 (1088)
Q Consensus 530 ~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~-~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y 608 (1088)
..|++++++|.. ...++|++ +-.+.||+....+..-. .... -...|+.+-. +...|.+|-..|.+-+|
T Consensus 27 ~~vssl~fsp~~-----P~d~aVt~--S~rvqly~~~~~~~~k~~srFk--~~v~s~~fR~--DG~LlaaGD~sG~V~vf 95 (487)
T KOG0310|consen 27 NSVSSLCFSPKH-----PYDFAVTS--SVRVQLYSSVTRSVRKTFSRFK--DVVYSVDFRS--DGRLLAAGDESGHVKVF 95 (487)
T ss_pred CcceeEecCCCC-----CCceEEec--ccEEEEEecchhhhhhhHHhhc--cceeEEEeec--CCeEEEccCCcCcEEEe
Confidence 457888997743 34455542 45789998765433210 0111 1223443321 34567779899999888
Q ss_pred EEecCCCccccceeeecCccceeEEEEEeCCceEEEEec-CCceEEEecC-CcEEEeeccc-ccceeeeccCCCCCCCeE
Q 001387 609 LLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAAS-DRPTVIYSSN-KKLLYSNVNL-KEVSHMCPFNSAAFPDSL 685 (1088)
Q Consensus 609 ~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~-~~p~~i~~~~-~~~~~~~l~~-~~i~~~~~f~~~~~~~~l 685 (1088)
.+.+. ..| +....-..|++...|...+ +.+|+.| |....-+++- +......+.. .+......++. ..+.+
T Consensus 96 D~k~r-~iL---R~~~ah~apv~~~~f~~~d-~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~--~~~hi 168 (487)
T KOG0310|consen 96 DMKSR-VIL---RQLYAHQAPVHVTKFSPQD-NTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISP--ANDHI 168 (487)
T ss_pred ccccH-HHH---HHHhhccCceeEEEecccC-CeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeecccc--CCCeE
Confidence 74321 011 1223456788887774333 4555554 3333334331 2221112211 11111111111 11233
Q ss_pred EEEe--CCeEEEEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECC
Q 001387 686 AIAK--EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD 763 (1088)
Q Consensus 686 ~~~~--~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~ 763 (1088)
+++- ++.+++-..-... -.+..+.=|.....++|.|....++-+. ...+++.|-.++..+-.-.+.
T Consensus 169 vvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAg-----------Gn~vkVWDl~~G~qll~~~~~ 236 (487)
T KOG0310|consen 169 VVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAG-----------GNSVKVWDLTTGGQLLTSMFN 236 (487)
T ss_pred EEecCCCceEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcC-----------CCeEEEEEecCCceehhhhhc
Confidence 3332 4555554443332 3455666677889999999877776653 357899988654433332334
Q ss_pred CCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEecccc--CeEEEEECC
Q 001387 764 TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFN--GKLLAAINQ 841 (1088)
Q Consensus 764 ~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~--g~Lv~~~g~ 841 (1088)
-+-+++|++... ++...+..| --|++.+|++.+ +++++...++|||.+|.-.. ..+++++++
T Consensus 237 H~KtVTcL~l~s---~~~rLlS~s-----------LD~~VKVfd~t~--~Kvv~s~~~~~pvLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 237 HNKTVTCLRLAS---DSTRLLSGS-----------LDRHVKVFDTTN--YKVVHSWKYPGPVLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred ccceEEEEEeec---CCceEeecc-----------cccceEEEEccc--eEEEEeeecccceeeEEecCCCceEEEeccc
Confidence 667888887653 333333333 347999998654 88999999999999999875 468899888
Q ss_pred EEEEEE
Q 001387 842 KIQLYK 847 (1088)
Q Consensus 842 ~l~v~~ 847 (1088)
-+..+.
T Consensus 301 Glv~~r 306 (487)
T KOG0310|consen 301 GLVSIR 306 (487)
T ss_pred ceeeee
Confidence 776544
No 33
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.76 E-value=0.13 Score=56.89 Aligned_cols=75 Identities=20% Similarity=0.316 Sum_probs=47.3
Q ss_pred cCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCC
Q 001387 715 PRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPE 794 (1088)
Q Consensus 715 p~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~ 794 (1088)
...+.|.++...+++++... .-.+||+---+..+..-++-. |+.+.-+.++.|.. +.-|+|||+
T Consensus 438 Itsl~Fn~d~qiLAiaS~~~--------knalrLVHvPS~TVFsNfP~~-n~~vg~vtc~aFSP-~sG~lAvGN------ 501 (514)
T KOG2055|consen 438 ITSLQFNHDAQILAIASRVK--------KNALRLVHVPSCTVFSNFPTS-NTKVGHVTCMAFSP-NSGYLAVGN------ 501 (514)
T ss_pred eeeeeeCcchhhhhhhhhcc--------ccceEEEeccceeeeccCCCC-CCcccceEEEEecC-CCceEEeec------
Confidence 34566777777777776543 346777765555554433322 55544444455653 467999997
Q ss_pred CCCCcceEEEEEEEe
Q 001387 795 ENEPTKGRILVFIVE 809 (1088)
Q Consensus 795 e~~~~~Gri~v~~i~ 809 (1088)
..||+.+|++.
T Consensus 502 ----e~grv~l~kL~ 512 (514)
T KOG2055|consen 502 ----EAGRVHLFKLH 512 (514)
T ss_pred ----CCCceeeEeec
Confidence 46899999763
No 34
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=96.70 E-value=0.73 Score=53.79 Aligned_cols=72 Identities=24% Similarity=0.337 Sum_probs=49.0
Q ss_pred EEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEE----ecCCC-----------------CcCceeEEeeeec
Q 001387 533 SCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITK----EHLGG-----------------EIIPRSVLLCAFE 591 (1088)
Q Consensus 533 s~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~----~~l~~-----------------~~~p~si~~~~~~ 591 (1088)
.||+++ +.++++||. +|.+++|+-.+|+-+.+ ..++. ...|..|++.--+
T Consensus 264 nCIcVs--------~r~I~cgCa-~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fde 334 (1080)
T KOG1408|consen 264 NCICVS--------SRLIACGCA-KGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDE 334 (1080)
T ss_pred ceeeee--------cceEEEeec-cceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecC
Confidence 477774 689999999 99999998665543322 11110 1346666654334
Q ss_pred CceEEEEEeCCCcEEEEEEecC
Q 001387 592 GISYLLCALGDGHLLNFLLNMK 613 (1088)
Q Consensus 592 ~~~~L~vgl~~G~l~~y~~~~~ 613 (1088)
.+.+|-+-.+|-.|+++.++..
T Consensus 335 t~~klscVYndhSlYvWDvrD~ 356 (1080)
T KOG1408|consen 335 TTDKLSCVYNDHSLYVWDVRDV 356 (1080)
T ss_pred CCceEEEEEcCceEEEEecccc
Confidence 5678999999999999887653
No 35
>PLN00181 protein SPA1-RELATED; Provisional
Probab=96.64 E-value=0.51 Score=60.32 Aligned_cols=202 Identities=13% Similarity=0.142 Sum_probs=113.8
Q ss_pred CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeC
Q 001387 713 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVL 792 (1088)
Q Consensus 713 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~ 792 (1088)
.....+.++|....+++.++.. +.+++.|..+++.+..+... ..+.|+ .+......++++|+
T Consensus 576 ~~V~~l~~~p~~~~~L~Sgs~D---------g~v~iWd~~~~~~~~~~~~~--~~v~~v---~~~~~~g~~latgs---- 637 (793)
T PLN00181 576 KRVWSIDYSSADPTLLASGSDD---------GSVKLWSINQGVSIGTIKTK--ANICCV---QFPSESGRSLAFGS---- 637 (793)
T ss_pred CCEEEEEEcCCCCCEEEEEcCC---------CEEEEEECCCCcEEEEEecC--CCeEEE---EEeCCCCCEEEEEe----
Confidence 3456788887444344333322 57999998888877766532 344443 34333467788886
Q ss_pred CCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccccCe-EEEE-ECCEEEEEEeeeccC--cccccccccccccce
Q 001387 793 PEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGK-LLAA-INQKIQLYKWMLRDD--GTRELQSECGHHGHI 868 (1088)
Q Consensus 793 ~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~g~-Lv~~-~g~~l~v~~~~~~~~--~~~~L~~~~~~~~~~ 868 (1088)
..|.|++|++.+.+..+.....+.++|+++.-.++. |+.+ ....|.+|++..... ..+.+.....+....
T Consensus 638 ------~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i 711 (793)
T PLN00181 638 ------ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVK 711 (793)
T ss_pred ------CCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCe
Confidence 347999999876543332233567789888766654 4433 346788877531100 001111111112222
Q ss_pred EEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEE----------EeccCCCceeEEEEEeeCc-eEEEEccCCcEEEEe
Q 001387 869 LALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEE----------RARDYNANWMSAVEILDDD-IYLGAENNFNLFTVR 937 (1088)
Q Consensus 869 ~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~----------~~~D~~~~~v~~~~~l~~~-~~l~~D~~gnl~~l~ 937 (1088)
..+++...+++|++|..-..+.++........... +.-+....++.++.+-.++ .+++++.+|+|.+++
T Consensus 712 ~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 712 NFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred eEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 33445556789999988888776543211111100 0112233457777665444 577888999999987
Q ss_pred e
Q 001387 938 K 938 (1088)
Q Consensus 938 ~ 938 (1088)
+
T Consensus 792 ~ 792 (793)
T PLN00181 792 M 792 (793)
T ss_pred c
Confidence 4
No 36
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=96.56 E-value=0.45 Score=50.28 Aligned_cols=142 Identities=18% Similarity=0.286 Sum_probs=77.4
Q ss_pred CceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc----cCe-EEE-EECCEEEEEEeeeccC
Q 001387 780 SNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF----NGK-LLA-AINQKIQLYKWMLRDD 853 (1088)
Q Consensus 780 ~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~----~g~-Lv~-~~g~~l~v~~~~~~~~ 853 (1088)
..+||++|| ++|.+++|+.. .++.+++..+.. +++|.++ +|+ |++ +....|+.|+..+-++
T Consensus 164 ~g~yIitGt----------sKGkllv~~a~--t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~ 230 (405)
T KOG1273|consen 164 RGKYIITGT----------SKGKLLVYDAE--TLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDD 230 (405)
T ss_pred CCCEEEEec----------CcceEEEEecc--hheeeeeeeech-heeeeEEEEeccCcEEEEecCCceEEEEehhhhcc
Confidence 568999999 56999999764 467777766554 5666554 453 443 4556677887642111
Q ss_pred ----cc----ccc---ccccccccceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCc
Q 001387 854 ----GT----REL---QSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDD 922 (1088)
Q Consensus 854 ----~~----~~L---~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~ 922 (1088)
+. .|+ +.+..+.. .+.+-.|.||.+|.. +.-.++.|...-+.|+.+-.-...-....+.-=...
T Consensus 231 ~~r~~e~e~~~K~qDvVNk~~Wk~----ccfs~dgeYv~a~s~-~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~r 305 (405)
T KOG1273|consen 231 EGRDGEVEPEHKLQDVVNKLQWKK----CCFSGDGEYVCAGSA-RAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVR 305 (405)
T ss_pred cCccCCcChhHHHHHHHhhhhhhh----eeecCCccEEEeccc-cceeEEEEecCCcceeeeecCCchhheeecccccce
Confidence 11 111 12222221 222335779888884 444567787777777655322221111011000002
Q ss_pred eEEEEccCCcEEEEeeC
Q 001387 923 IYLGAENNFNLFTVRKN 939 (1088)
Q Consensus 923 ~~l~~D~~gnl~~l~~~ 939 (1088)
.++++-..|++.+....
T Consensus 306 p~i~si~sg~v~iw~~~ 322 (405)
T KOG1273|consen 306 PIIASIASGVVYIWAVV 322 (405)
T ss_pred eeeeeccCCceEEEEee
Confidence 35666688998887654
No 37
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.47 E-value=1.9 Score=47.42 Aligned_cols=255 Identities=15% Similarity=0.167 Sum_probs=125.3
Q ss_pred cCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEE-EEEeCCCcEEEEEEecCCCccccceeeecCccceeEEE
Q 001387 556 TDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYL-LCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRT 634 (1088)
Q Consensus 556 ~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L-~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~ 634 (1088)
.++.+.+|++.+.+.+...... ..|+++.+.. +...+ ..+..+|.+..|.... +++. +....+..|..+ .
T Consensus 9 ~d~~v~~~d~~t~~~~~~~~~~--~~~~~l~~~~--dg~~l~~~~~~~~~v~~~d~~~--~~~~--~~~~~~~~~~~~-~ 79 (300)
T TIGR03866 9 KDNTISVIDTATLEVTRTFPVG--QRPRGITLSK--DGKLLYVCASDSDTIQVIDLAT--GEVI--GTLPSGPDPELF-A 79 (300)
T ss_pred CCCEEEEEECCCCceEEEEECC--CCCCceEECC--CCCEEEEEECCCCeEEEEECCC--CcEE--EeccCCCCccEE-E
Confidence 4899999998766554332222 2355555443 23345 4466788888776543 2221 112223333322 2
Q ss_pred EEeCCceEEEEecC--CceEEEecC-CcE-EEeecccccceeeeccCCCCCCC--eEEEEeCCeEEEEEEcCCCCeEEEE
Q 001387 635 FSSKNTTHVFAASD--RPTVIYSSN-KKL-LYSNVNLKEVSHMCPFNSAAFPD--SLAIAKEGELTIGTIDDIQKLHIRS 708 (1088)
Q Consensus 635 ~~~~~~~~v~~~~~--~p~~i~~~~-~~~-~~~~l~~~~i~~~~~f~~~~~~~--~l~~~~~~~l~i~~l~~~~~~~~~~ 708 (1088)
+. .+...+++.+. ....++.-. ++. ...+.. ....+ ..| .++ .++....+.-.+..++.......+.
T Consensus 80 ~~-~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~-~~~----~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~ 152 (300)
T TIGR03866 80 LH-PNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEG-MAV----SPDGKIVVNTSETTNMAHFIDTKTYEIVDN 152 (300)
T ss_pred EC-CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcce-EEE----CCCCCEEEEEecCCCeEEEEeCCCCeEEEE
Confidence 22 22345555542 222222211 111 111110 00111 111 122 2333333221222233333334456
Q ss_pred EeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCc----eEeEEEEEEEcCCCceEE
Q 001387 709 IPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFE----YGCSILSCSFSDDSNVYY 784 (1088)
Q Consensus 709 i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E----~v~si~~~~~~~~~~~~i 784 (1088)
++.+..|+.+.+.++.+.+++.+... ..++++|..+++.+.++.+.... ... ...+.+..+++ ++
T Consensus 153 ~~~~~~~~~~~~s~dg~~l~~~~~~~---------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~s~dg~-~~ 221 (300)
T TIGR03866 153 VLVDQRPRFAEFTADGKELWVSSEIG---------GTVSVIDVATRKVIKKITFEIPGVHPEAVQ-PVGIKLTKDGK-TA 221 (300)
T ss_pred EEcCCCccEEEECCCCCEEEEEcCCC---------CEEEEEEcCcceeeeeeeecccccccccCC-ccceEECCCCC-EE
Confidence 67778899999999888776654322 46899999998888777654211 111 11123343333 44
Q ss_pred EEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cC-eEEEEE--CCEEEEEEe
Q 001387 785 CVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NG-KLLAAI--NQKIQLYKW 848 (1088)
Q Consensus 785 ~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g-~Lv~~~--g~~l~v~~~ 848 (1088)
.++.+ ..+++.+|+....++. ......+.+.+++-- +| +|+++. .++|++|+.
T Consensus 222 ~~~~~---------~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 222 FVALG---------PANRVAVVDAKTYEVL--DYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred EEEcC---------CCCeEEEEECCCCcEE--EEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 44332 2357889988655443 222345677777633 33 566554 468888775
No 38
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=96.29 E-value=1.3 Score=47.62 Aligned_cols=262 Identities=18% Similarity=0.219 Sum_probs=129.2
Q ss_pred ceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCC-CcCceeEEeeeecCceEEEEEeCCCcEEEE
Q 001387 530 YEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGG-EIIPRSVLLCAFEGISYLLCALGDGHLLNF 608 (1088)
Q Consensus 530 ~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~-~~~p~si~~~~~~~~~~L~vgl~~G~l~~y 608 (1088)
..|-|+++.| ...+++-|.- |+++.||++..-.+..+ |+. -...+.+++... -+|||....|+.+-+|
T Consensus 152 gWVr~vavdP------~n~wf~tgs~-DrtikIwDlatg~Lklt--ltGhi~~vr~vavS~r--HpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 152 GWVRSVAVDP------GNEWFATGSA-DRTIKIWDLATGQLKLT--LTGHIETVRGVAVSKR--HPYLFSAGEDKQVKCW 220 (460)
T ss_pred ceEEEEeeCC------CceeEEecCC-CceeEEEEcccCeEEEe--ecchhheeeeeeeccc--CceEEEecCCCeeEEE
Confidence 5678999977 2467777766 99999999975333221 211 024566665543 4899999999999999
Q ss_pred EEecCCCccccceeee--c-CccceeEEEEEeCCceEEEEecCCceEEEec--CCcEEEeecc--cccceeeeccCCCCC
Q 001387 609 LLNMKTGELTDRKKVS--L-GTQPITLRTFSSKNTTHVFAASDRPTVIYSS--NKKLLYSNVN--LKEVSHMCPFNSAAF 681 (1088)
Q Consensus 609 ~~~~~~~~l~~~~~~~--l-G~~pv~l~~~~~~~~~~v~~~~~~p~~i~~~--~~~~~~~~l~--~~~i~~~~~f~~~~~ 681 (1088)
.+.... ..|.+. + |-..+.++| .-.++++|.|-..+-.. +.+....-+. ..++..+. ..+.-
T Consensus 221 DLe~nk----vIR~YhGHlS~V~~L~lhP-----Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~--~~~~d 289 (460)
T KOG0285|consen 221 DLEYNK----VIRHYHGHLSGVYCLDLHP-----TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVM--CQPTD 289 (460)
T ss_pred echhhh----hHHHhccccceeEEEeccc-----cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEE--eecCC
Confidence 876431 011100 0 111122222 12355555444433221 2222221111 11111100 00111
Q ss_pred CCeEEEEeCCeEEEEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEE
Q 001387 682 PDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYP 761 (1088)
Q Consensus 682 ~~~l~~~~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~ 761 (1088)
|+-+-...+..+++=.+-... ....-..-..+.|.++-||..++|+-++.++ +.+..
T Consensus 290 pqvit~S~D~tvrlWDl~agk-t~~tlt~hkksvral~lhP~e~~fASas~dn----------------------ik~w~ 346 (460)
T KOG0285|consen 290 PQVITGSHDSTVRLWDLRAGK-TMITLTHHKKSVRALCLHPKENLFASASPDN----------------------IKQWK 346 (460)
T ss_pred CceEEecCCceEEEeeeccCc-eeEeeecccceeeEEecCCchhhhhccCCcc----------------------ceecc
Confidence 111112224444443333221 1111112235677788888777776665443 12223
Q ss_pred CCCCceEeE------EEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeC-CeEEEEEEEEecC------ceeEe
Q 001387 762 LDTFEYGCS------ILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVED-GKLQLIAEKETKG------AVYSL 828 (1088)
Q Consensus 762 ~~~~E~v~s------i~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~-~kl~~~~~~~~~g------~v~ai 828 (1088)
|+.+|.+.. +. -.+......++++|. .+|.+..|+.+. .+++.......+| .|++.
T Consensus 347 ~p~g~f~~nlsgh~~ii-ntl~~nsD~v~~~G~----------dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as 415 (460)
T KOG0285|consen 347 LPEGEFLQNLSGHNAII-NTLSVNSDGVLVSGG----------DNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFAS 415 (460)
T ss_pred CCccchhhcccccccee-eeeeeccCceEEEcC----------CceEEEEEecCcCcccccccccccCCccccccceeEE
Confidence 333333222 11 011223467788775 468999999883 4565555444444 45555
Q ss_pred ccc--cCeEEEE-ECCEEEEEE
Q 001387 829 NAF--NGKLLAA-INQKIQLYK 847 (1088)
Q Consensus 829 ~~~--~g~Lv~~-~g~~l~v~~ 847 (1088)
|.- +-+|+.| .+++|.+|+
T Consensus 416 ~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 416 CFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred eecccCceEEeccCCcceEEEe
Confidence 522 2366644 667888877
No 39
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=96.29 E-value=0.69 Score=48.89 Aligned_cols=245 Identities=11% Similarity=0.134 Sum_probs=135.6
Q ss_pred CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeC
Q 001387 713 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVL 792 (1088)
Q Consensus 713 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~ 792 (1088)
+...++.|+|.++.++|.+ |-++++++|....+.. .+|...-.+++++ |.+ ...+++|+
T Consensus 14 d~IS~v~f~~~~~~LLvss----------WDgslrlYdv~~~~l~--~~~~~~~plL~c~---F~d--~~~~~~G~---- 72 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSS----------WDGSLRLYDVPANSLK--LKFKHGAPLLDCA---FAD--ESTIVTGG---- 72 (323)
T ss_pred hceeeEEEcCcCCcEEEEe----------ccCcEEEEeccchhhh--hheecCCceeeee---ccC--CceEEEec----
Confidence 4556788898888887776 4478999987655322 2333334444443 332 45577776
Q ss_pred CCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc--cCeEEE-EECCEEEEEEeeeccCcccccccccccccceE
Q 001387 793 PEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF--NGKLLA-AINQKIQLYKWMLRDDGTRELQSECGHHGHIL 869 (1088)
Q Consensus 793 ~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~--~g~Lv~-~~g~~l~v~~~~~~~~~~~~L~~~~~~~~~~~ 869 (1088)
..|.|..+++.-+.-..+. .+.+++.+|+.. .|.+++ +=+++|.+++ .+. +.... .++..--
T Consensus 73 ------~dg~vr~~Dln~~~~~~ig--th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD--~R~---~~~~~--~~d~~kk 137 (323)
T KOG1036|consen 73 ------LDGQVRRYDLNTGNEDQIG--THDEGIRCIEYSYEVGCVISGSWDKTIKFWD--PRN---KVVVG--TFDQGKK 137 (323)
T ss_pred ------cCceEEEEEecCCcceeec--cCCCceEEEEeeccCCeEEEcccCccEEEEe--ccc---ccccc--ccccCce
Confidence 4588888888744333332 356788888877 566654 3457777744 331 11111 1111123
Q ss_pred EEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEecc-CCCceeEEEEEeeC-ceEEEEccCCcEEEEeeCCCCCCccc
Q 001387 870 ALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARD-YNANWMSAVEILDD-DIYLGAENNFNLFTVRKNSEGATDEE 947 (1088)
Q Consensus 870 ~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D-~~~~~v~~~~~l~~-~~~l~~D~~gnl~~l~~~~~~~~~~~ 947 (1088)
+-++++.||+++||..-+.+.++..+.-..-+ --|+ .-...+.++.++.. +-++++--+|-+.+=-.++....+..
T Consensus 138 Vy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~sk 215 (323)
T KOG1036|consen 138 VYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPF--QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSK 215 (323)
T ss_pred EEEEeccCCEEEEeecCceEEEEEcccccchh--hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhh
Confidence 55678899999999999998776543211111 1111 12233445555553 34777778998877555543221111
Q ss_pred c-----cceeEEEEEEcCCccceEEeeeeeecCCCCCCCCccEEEEEcccccEEEEEecChhHHH
Q 001387 948 R-----GRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYL 1007 (1088)
Q Consensus 948 ~-----~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~~l~~t~~G~i~~l~~l~~~~~~ 1007 (1088)
. +++. .....+.=.||++.... ....+..|+.||-+..--+.+.+.++
T Consensus 216 kyaFkCHr~~-~~~~~~~yPVNai~Fhp-----------~~~tfaTgGsDG~V~~Wd~~~rKrl~ 268 (323)
T KOG1036|consen 216 KYAFKCHRLS-EKDTEIIYPVNAIAFHP-----------IHGTFATGGSDGIVNIWDLFNRKRLK 268 (323)
T ss_pred ceeEEeeecc-cCCceEEEEeceeEecc-----------ccceEEecCCCceEEEccCcchhhhh
Confidence 1 1111 11222333455543221 12345667788888777777665443
No 40
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.14 E-value=4.2 Score=48.15 Aligned_cols=422 Identities=17% Similarity=0.180 Sum_probs=209.1
Q ss_pred EEEEecCCcceeeeeeCCCCCcEEEEEECCCEEEEEECC--CeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCC
Q 001387 469 VRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGG--GHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSY 546 (1088)
Q Consensus 469 i~l~~~~~~~~~~~~~~~~~~~I~~a~~~~~~lvv~~~~--~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~ 546 (1088)
++++..+++..+..|+.-...++...++++.-.+++..+ +.+..-.+.++..... -.-+++.|+++.+.|-. .
T Consensus 86 lrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~-fkG~gGvVssl~F~~~~----~ 160 (775)
T KOG0319|consen 86 LRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHS-FKGHGGVVSSLLFHPHW----N 160 (775)
T ss_pred EEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEE-ecCCCceEEEEEeCCcc----c
Confidence 344555555566667653333455555554445666533 4454445554332221 12457889999987633 2
Q ss_pred ccEEEEEEecCCEEEEEECCCCCc-eE--EecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceee
Q 001387 547 SQIAAVGMWTDISVRIFSLPDLNL-IT--KEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKV 623 (1088)
Q Consensus 547 ~~~~~vg~w~~~~i~i~~l~~l~~-~~--~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~ 623 (1088)
...++.|.. |+.+++|++.+-.. +. ..+.+ ...++.+. ++...++-+.||-.+..|++..- +..++.
T Consensus 161 ~~lL~sg~~-D~~v~vwnl~~~~tcl~~~~~H~S---~vtsL~~~--~d~~~~ls~~RDkvi~vwd~~~~----~~l~~l 230 (775)
T KOG0319|consen 161 RWLLASGAT-DGTVRVWNLNDKRTCLHTMILHKS---AVTSLAFS--EDSLELLSVGRDKVIIVWDLVQY----KKLKTL 230 (775)
T ss_pred hhheeecCC-CceEEEEEcccCchHHHHHHhhhh---heeeeeec--cCCceEEEeccCcEEEEeehhhh----hhhhee
Confidence 356666766 99999999974222 11 12222 33455433 23566777888888888877321 011111
Q ss_pred ec--Cccc-eeEEEEEeCC-ceEEEEecCCceEEEecC--CcEEEe-ec-ccccceeeeccCCCCCCCeEEEEeCCeEEE
Q 001387 624 SL--GTQP-ITLRTFSSKN-TTHVFAASDRPTVIYSSN--KKLLYS-NV-NLKEVSHMCPFNSAAFPDSLAIAKEGELTI 695 (1088)
Q Consensus 624 ~l--G~~p-v~l~~~~~~~-~~~v~~~~~~p~~i~~~~--~~~~~~-~l-~~~~i~~~~~f~~~~~~~~l~~~~~~~l~i 695 (1088)
.+ +-.. +.+.. +.++ ...++..|++-.+-+.+. ++..+. .. ..+.+....+... ....++.+++.+|.+
T Consensus 231 p~ye~~E~vv~l~~-~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~--~~~~l~vtaeQnl~l 307 (775)
T KOG0319|consen 231 PLYESLESVVRLRE-ELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIES--MSQLLLVTAEQNLFL 307 (775)
T ss_pred chhhheeeEEEech-hcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccc--cCceEEEEccceEEE
Confidence 10 0011 11111 1111 124555566665554431 221110 00 0223444443322 223345555777777
Q ss_pred EEEcCCCCeEEEEEeCC--CccCeEEE-ecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEE
Q 001387 696 GTIDDIQKLHIRSIPLG--EHPRRICH-QEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSIL 772 (1088)
Q Consensus 696 ~~l~~~~~~~~~~i~l~--~tp~~i~y-~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~ 772 (1088)
...++. -.+++| +| +...-+.| -|+.+.++|++.. +++|+++-.+...- +--.-.|.++|+.
T Consensus 308 ~d~~~l--~i~k~i-vG~ndEI~Dm~~lG~e~~~laVATNs----------~~lr~y~~~~~~c~--ii~GH~e~vlSL~ 372 (775)
T KOG0319|consen 308 YDEDEL--TIVKQI-VGYNDEILDMKFLGPEESHLAVATNS----------PELRLYTLPTSYCQ--IIPGHTEAVLSLD 372 (775)
T ss_pred EEcccc--EEehhh-cCCchhheeeeecCCccceEEEEeCC----------CceEEEecCCCceE--EEeCchhheeeee
Confidence 744432 122222 22 23333444 3566778888754 57999976655432 3334457788887
Q ss_pred EEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEE---EEEecCceeEeccccC--eEEEEECC--EEEE
Q 001387 773 SCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIA---EKETKGAVYSLNAFNG--KLLAAINQ--KIQL 845 (1088)
Q Consensus 773 ~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~---~~~~~g~v~ai~~~~g--~Lv~~~g~--~l~v 845 (1088)
.|. ..-+|+-|. + --.+++|++.++.-+... -.-+.+.|.+++.-.+ .+++++++ ++.+
T Consensus 373 ~~~----~g~llat~s-K---------D~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~ 438 (775)
T KOG0319|consen 373 VWS----SGDLLATGS-K---------DKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKL 438 (775)
T ss_pred ecc----cCcEEEEec-C---------CceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEE
Confidence 541 123444333 2 236788888654322222 2345778888876543 25555554 4555
Q ss_pred EEeeeccCccccccccccc-----ccceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEee
Q 001387 846 YKWMLRDDGTRELQSECGH-----HGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILD 920 (1088)
Q Consensus 846 ~~~~~~~~~~~~L~~~~~~-----~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~ 920 (1088)
+.+....+..-...-.+.+ +--+..+.+.-.+..|..|-.-|-..++.+. +..-+..++... |.+-++.|--
T Consensus 439 W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le-~~~l~~vLsGH~--RGvw~V~Fs~ 515 (775)
T KOG0319|consen 439 WDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE-QLRLLGVLSGHT--RGVWCVSFSK 515 (775)
T ss_pred ecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc-CceEEEEeeCCc--cceEEEEecc
Confidence 5542100110001111111 1112344554445567777777777776553 222334455444 4444677765
Q ss_pred CceE-EEEccCCcEEEEeeCC
Q 001387 921 DDIY-LGAENNFNLFTVRKNS 940 (1088)
Q Consensus 921 ~~~~-l~~D~~gnl~~l~~~~ 940 (1088)
.+.+ +.+..++.+-+.....
T Consensus 516 ~dq~laT~SgD~TvKIW~is~ 536 (775)
T KOG0319|consen 516 NDQLLATCSGDKTVKIWSIST 536 (775)
T ss_pred ccceeEeccCCceEEEEEecc
Confidence 5554 4566688888887764
No 41
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=96.12 E-value=1.4 Score=45.31 Aligned_cols=225 Identities=16% Similarity=0.156 Sum_probs=125.7
Q ss_pred EEEEeCCeEEEEEEcCCCCeEEEEEeCC-CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECC
Q 001387 685 LAIAKEGELTIGTIDDIQKLHIRSIPLG-EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD 763 (1088)
Q Consensus 685 l~~~~~~~l~i~~l~~~~~~~~~~i~l~-~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~ 763 (1088)
|+.+....+++..+...+.-++.++..- ..+..+.|+.+.+-..-.. +-+.+|+.|-.+-..- -+|+
T Consensus 55 LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgs----------eDgt~kIWdlR~~~~q--R~~~ 122 (311)
T KOG0315|consen 55 LAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGS----------EDGTVKIWDLRSLSCQ--RNYQ 122 (311)
T ss_pred hhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecC----------CCceEEEEeccCcccc--hhcc
Confidence 3334456677777776655566665543 3444455554444333221 1267788876653222 2334
Q ss_pred CCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cCeEEEEECCE
Q 001387 764 TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAINQK 842 (1088)
Q Consensus 764 ~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g~Lv~~~g~~ 842 (1088)
-+-.++++.. .. +..-+++|+ .+|+|.+|++.++.....---+..-+++++... +|..++|++++
T Consensus 123 ~~spVn~vvl---hp-nQteLis~d----------qsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnk 188 (311)
T KOG0315|consen 123 HNSPVNTVVL---HP-NQTELISGD----------QSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNK 188 (311)
T ss_pred CCCCcceEEe---cC-CcceEEeec----------CCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCC
Confidence 4455555532 22 345567776 579999999986543221111233567777655 67778888766
Q ss_pred EEEEEeeec-cCcccccccccccccce-EEEE--EEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEE
Q 001387 843 IQLYKWMLR-DDGTRELQSECGHHGHI-LALY--VQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEI 918 (1088)
Q Consensus 843 l~v~~~~~~-~~~~~~L~~~~~~~~~~-~~~~--l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~ 918 (1088)
=..|-|+.. ..+..+|.++..++.+. ++++ ++..+.++...-+-+-+.+ |+.++.-..++.-+-..||+-.|.|
T Consensus 189 G~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~i--wn~~~~~kle~~l~gh~rWvWdc~F 266 (311)
T KOG0315|consen 189 GNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKI--WNTDDFFKLELVLTGHQRWVWDCAF 266 (311)
T ss_pred ccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEE--EecCCceeeEEEeecCCceEEeeee
Confidence 444445422 22334566654444442 4443 2333457777777777665 5555542334445667799999999
Q ss_pred eeCceEEEE-ccCCcEEEEe
Q 001387 919 LDDDIYLGA-ENNFNLFTVR 937 (1088)
Q Consensus 919 l~~~~~l~~-D~~gnl~~l~ 937 (1088)
-.++.+|++ ..++-..+..
T Consensus 267 S~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 267 SADGEYLVTASSDHTARLWD 286 (311)
T ss_pred ccCccEEEecCCCCceeecc
Confidence 888877654 4454444443
No 42
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=95.94 E-value=3.2 Score=45.04 Aligned_cols=312 Identities=14% Similarity=0.149 Sum_probs=146.4
Q ss_pred cEEEEEECCCEEEEEECCCe-EE-EEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCC
Q 001387 490 SVNVATANASQVLLATGGGH-LV-YLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD 567 (1088)
Q Consensus 490 ~I~~a~~~~~~lvv~~~~~~-l~-~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~ 567 (1088)
++-+++.+|+.=+++..++. +- +.++.++.+. .+...-...|+|++++. .+.+++-|- .+|.+.||....
T Consensus 66 svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~-~eltgHKDSVt~~~Fsh------dgtlLATGd-msG~v~v~~~st 137 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA-GELTGHKDSVTCCSFSH------DGTLLATGD-MSGKVLVFKVST 137 (399)
T ss_pred ceEEEEeCCCCceEEecCCCceEEEEEccCCcce-eEecCCCCceEEEEEcc------CceEEEecC-CCccEEEEEccc
Confidence 56666777554444543332 22 2355444421 11122335689999863 245666554 489999999865
Q ss_pred CCceEEecCCCCcCceeEEeeeecC-ceEEEEEeCCCcEEEEEEecCCCccccceeeecCc-cceeEEEEEeCCceEEEE
Q 001387 568 LNLITKEHLGGEIIPRSVLLCAFEG-ISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGT-QPITLRTFSSKNTTHVFA 645 (1088)
Q Consensus 568 l~~~~~~~l~~~~~p~si~~~~~~~-~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~-~pv~l~~~~~~~~~~v~~ 645 (1088)
-...+.-. .....+.=+..+. ...|+.|..||.+..|++..+. . -.+.-|. .|+.--.|- .++..++.
T Consensus 138 g~~~~~~~----~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~----~-~kv~~Gh~~~ct~G~f~-pdGKr~~t 207 (399)
T KOG0296|consen 138 GGEQWKLD----QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA----L-CKVMSGHNSPCTCGEFI-PDGKRILT 207 (399)
T ss_pred CceEEEee----cccCceEEEEecccccEEEeecCCCcEEEEECCCcc----e-eeEecCCCCCccccccc-CCCceEEE
Confidence 32222110 0112333233332 3568899999999999987631 1 1122332 344333331 12233443
Q ss_pred ecCCceEEEec-CCcEEEeecccc--------cceeeeccCCCCCCCe-EEEEe--CCeEEEEEEcCCCCeEEEEEeCCC
Q 001387 646 ASDRPTVIYSS-NKKLLYSNVNLK--------EVSHMCPFNSAAFPDS-LAIAK--EGELTIGTIDDIQKLHIRSIPLGE 713 (1088)
Q Consensus 646 ~~~~p~~i~~~-~~~~~~~~l~~~--------~i~~~~~f~~~~~~~~-l~~~~--~~~l~i~~l~~~~~~~~~~i~l~~ 713 (1088)
.-+.-.++.++ +..-.+..++.. .+............++ +.++. .+.+..+..++...+....=...+
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~e 287 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDE 287 (399)
T ss_pred EecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhh
Confidence 33333333221 111111111100 0000000000001122 22222 334444443322222222222222
Q ss_pred ccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCC
Q 001387 714 HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLP 793 (1088)
Q Consensus 714 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~ 793 (1088)
....+..+...++++++..+ +.|-++|-.+++.-...+.+.. ++.+... +.+|++-++
T Consensus 288 sve~~~~ss~lpL~A~G~vd----------G~i~iyD~a~~~~R~~c~he~~--V~~l~w~-----~t~~l~t~c----- 345 (399)
T KOG0296|consen 288 SVESIPSSSKLPLAACGSVD----------GTIAIYDLAASTLRHICEHEDG--VTKLKWL-----NTDYLLTAC----- 345 (399)
T ss_pred hhhhcccccccchhhccccc----------ceEEEEecccchhheeccCCCc--eEEEEEc-----Ccchheeec-----
Confidence 33333334444455554433 5788899877765544444433 5554432 267888776
Q ss_pred CCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cCeEEEEEC--CEEEEEE
Q 001387 794 EENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAIN--QKIQLYK 847 (1088)
Q Consensus 794 ~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g~Lv~~~g--~~l~v~~ 847 (1088)
..|.++.|+..-++++..+ +-+..+|+++.-- ++++++.++ ++..||+
T Consensus 346 -----~~g~v~~wDaRtG~l~~~y-~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 346 -----ANGKVRQWDARTGQLKFTY-TGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred -----cCceEEeeeccccceEEEE-ecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 4689999998877766554 3455667766544 455554443 5555655
No 43
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.93 E-value=0.63 Score=53.32 Aligned_cols=76 Identities=17% Similarity=0.200 Sum_probs=51.6
Q ss_pred ceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCC-------CcCceeEEee--eec----CceEE
Q 001387 530 YEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGG-------EIIPRSVLLC--AFE----GISYL 596 (1088)
Q Consensus 530 ~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~-------~~~p~si~~~--~~~----~~~~L 596 (1088)
.+|||++.+. -.+++||+- +|++.|+++..-.+++.+.+.. ...+.++.+. ..+ ..+.|
T Consensus 87 g~vtal~~S~-------iGFvaigy~-~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 87 GPVTALKNSD-------IGFVAIGYE-SGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp -SEEEEEE-B-------TSEEEEEET-TSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred CcEeEEecCC-------CcEEEEEec-CCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 5567776643 458999986 9999999998777777655432 1234455433 233 34789
Q ss_pred EEEeCCCcEEEEEEecC
Q 001387 597 LCALGDGHLLNFLLNMK 613 (1088)
Q Consensus 597 ~vgl~~G~l~~y~~~~~ 613 (1088)
+||+..|.++.|++.+.
T Consensus 159 ~vGTn~G~v~~fkIlp~ 175 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPS 175 (395)
T ss_dssp EEEETTSEEEEEEEEE-
T ss_pred EEEeCCCCEEEEEEecC
Confidence 99999999999999863
No 44
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=95.91 E-value=3.9 Score=45.87 Aligned_cols=62 Identities=16% Similarity=0.172 Sum_probs=45.2
Q ss_pred EEEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEE-ECC
Q 001387 694 TIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTY-PLD 763 (1088)
Q Consensus 694 ~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~-~~~ 763 (1088)
.+.-++....-.+++|++|..|..|+++|+.+..+.++... ...|.++|..+.+.+.++ .+.
T Consensus 280 ~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~--------s~~VsViD~~t~k~i~~i~~vg 342 (352)
T TIGR02658 280 FLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTG--------DKTLYIFDAETGKELSSVNQLG 342 (352)
T ss_pred EEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCC--------CCcEEEEECcCCeEEeeeccCC
Confidence 34445555566889999999999999999998444444322 246889999999888876 444
No 45
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.80 E-value=0.54 Score=56.08 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=74.9
Q ss_pred cEEEEEECCCEEEEEEC-CCeEEEEEEcC-cEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCC
Q 001387 490 SVNVATANASQVLLATG-GGHLVYLEIGD-GILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD 567 (1088)
Q Consensus 490 ~I~~a~~~~~~lvv~~~-~~~l~~~~~~~-~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~ 567 (1088)
.|...+.+.++.+++.+ +..+.+=++.. .-|.. +.-..-|||++|.|+. ..|++=|+- |+.++||++++
T Consensus 371 DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~---F~HndfVTcVaFnPvD-----DryFiSGSL-D~KvRiWsI~d 441 (712)
T KOG0283|consen 371 DILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKV---FSHNDFVTCVAFNPVD-----DRYFISGSL-DGKVRLWSISD 441 (712)
T ss_pred hheecccccCCeeEeccccccEEeecCCCcceeeE---EecCCeeEEEEecccC-----CCcEeeccc-ccceEEeecCc
Confidence 47888866555555543 55554444432 12332 3334559999999875 467777877 99999999999
Q ss_pred CCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEec
Q 001387 568 LNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNM 612 (1088)
Q Consensus 568 l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~ 612 (1088)
.+.+.-..+. -+..++++.+ +..+.+||+-+|....|....
T Consensus 442 ~~Vv~W~Dl~--~lITAvcy~P--dGk~avIGt~~G~C~fY~t~~ 482 (712)
T KOG0283|consen 442 KKVVDWNDLR--DLITAVCYSP--DGKGAVIGTFNGYCRFYDTEG 482 (712)
T ss_pred CeeEeehhhh--hhheeEEecc--CCceEEEEEeccEEEEEEccC
Confidence 8876544443 2455666665 357899999999999998653
No 46
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=95.75 E-value=5.8 Score=46.59 Aligned_cols=495 Identities=14% Similarity=0.102 Sum_probs=226.0
Q ss_pred cCCceeeeeeEEecCCCEEEEEcCCcCeEEEEEEecCcEEeeEEEEEcCccccceEEEEecCCeEEEeeecCCeEEEEEe
Q 001387 250 IRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKEKVTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLN 329 (1088)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~ll~~~~G~l~~l~l~~~~~~v~~~~i~~~~~~~~~s~l~~l~~~~lf~gS~~gds~l~~~~ 329 (1088)
..+..++|-+.. .+.+++.++..+|.+-.=.+..+ -..... -+.++...-..|+...++.||-.+ .++.+..|.
T Consensus 23 ~~Ps~I~slA~s-~kS~~lAvsRt~g~IEiwN~~~~--w~~~~v-i~g~~drsIE~L~W~e~~RLFS~g--~sg~i~EwD 96 (691)
T KOG2048|consen 23 YKPSEIVSLAYS-HKSNQLAVSRTDGNIEIWNLSNN--WFLEPV-IHGPEDRSIESLAWAEGGRLFSSG--LSGSITEWD 96 (691)
T ss_pred eeccceEEEEEe-ccCCceeeeccCCcEEEEccCCC--ceeeEE-EecCCCCceeeEEEccCCeEEeec--CCceEEEEe
Confidence 344555665433 34567889999998755544431 111111 122344445677777888999654 455666665
Q ss_pred eCCCCCCCcEEEEeee-ccCCceeeeEEeccCCCCCceEEEEeeCCCCceEEEEecCCceeEEEe-eeCCCc-ceEEEee
Q 001387 330 LQPDAKGSYVEVLERY-VNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQAS-VELQGI-KGMWSLR 406 (1088)
Q Consensus 330 ~~~~~~~~~~~~~~~l-~n~~Pi~D~~~~~~~~~~~~~l~~~sG~g~~g~L~~lr~gi~~~~~~~-~~l~~v-~~iw~l~ 406 (1088)
.-. ++.+-.+ +|-|+|..|++-+.. +.+..-| .+|.|..+. +.+.++.- ..|+-. .++.++.
T Consensus 97 l~~------lk~~~~~d~~gg~IWsiai~p~~----~~l~Igc---ddGvl~~~s--~~p~~I~~~r~l~rq~sRvLsls 161 (691)
T KOG2048|consen 97 LHT------LKQKYNIDSNGGAIWSIAINPEN----TILAIGC---DDGVLYDFS--IGPDKITYKRSLMRQKSRVLSLS 161 (691)
T ss_pred ccc------CceeEEecCCCcceeEEEeCCcc----ceEEeec---CCceEEEEe--cCCceEEEEeecccccceEEEEE
Confidence 422 2222223 577899999987642 3333333 334444443 33433332 222211 2333332
Q ss_pred cCCCCCCccEEEEEecCc-eEEEEecCCCceeeeeecceeccccceeeeecCCCeEEEEecCcEEEEecCCcceeeeeeC
Q 001387 407 SSTDDPFDTFLVVSFISE-TRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKS 485 (1088)
Q Consensus 407 ~~~~~~~~~~lilS~~~~-T~vl~~~~~~~~~e~~~~~f~~~~~Ti~~~~~~~~~ivQVt~~~i~l~~~~~~~~~~~~~~ 485 (1088)
... .+..++....+. -+++.+.. ..|+.. +|-+--++- .+....-|.
T Consensus 162 w~~---~~~~i~~Gs~Dg~Iriwd~~~---------------~~t~~~----------~~~~~d~l~---k~~~~iVWS- 209 (691)
T KOG2048|consen 162 WNP---TGTKIAGGSIDGVIRIWDVKS---------------GQTLHI----------ITMQLDRLS---KREPTIVWS- 209 (691)
T ss_pred ecC---CccEEEecccCceEEEEEcCC---------------CceEEE----------eeecccccc---cCCceEEEE-
Confidence 210 011122111111 11111100 011110 111100110 011222231
Q ss_pred CCCCcEEEEEECCCEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEEC
Q 001387 486 PPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL 565 (1088)
Q Consensus 486 ~~~~~I~~a~~~~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l 565 (1088)
.....++.++-..+.|.+.+-....+++.+.. .-+...|-||+..+ .++.++.+.- |+.+.-|++
T Consensus 210 -------v~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~-~~h~adVl~Lav~~------~~d~vfsaGv-d~~ii~~~~ 274 (691)
T KOG2048|consen 210 -------VLFLRDSTIASGDSAGTVTFWDSIFGTLIQSH-SCHDADVLALAVAD------NEDRVFSAGV-DPKIIQYSL 274 (691)
T ss_pred -------EEEeecCcEEEecCCceEEEEcccCcchhhhh-hhhhcceeEEEEcC------CCCeEEEccC-CCceEEEEe
Confidence 12234566666666677766554445554432 33567788998754 3567777766 888877776
Q ss_pred CCCCceEEecCCCCcC---ceeEEeeeecCceEEEEEeCCCcEEEEEEecCCC-ccccceeeecCccceeEEEEEeCCce
Q 001387 566 PDLNLITKEHLGGEII---PRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTG-ELTDRKKVSLGTQPITLRTFSSKNTT 641 (1088)
Q Consensus 566 ~~l~~~~~~~l~~~~~---p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~-~l~~~~~~~lG~~pv~l~~~~~~~~~ 641 (1088)
..-.--+......+.. .+++++. + ..|+-|-+|+.|+......... ... ++.... .+++.. .+..+
T Consensus 275 ~~~~~~wv~~~~r~~h~hdvrs~av~--~--~~l~sgG~d~~l~i~~s~~~~~~~h~-~~~~~p-~~~~v~----~a~~~ 344 (691)
T KOG2048|consen 275 TTNKSEWVINSRRDLHAHDVRSMAVI--E--NALISGGRDFTLAICSSREFKNMDHR-QKNLFP-ASDRVS----VAPEN 344 (691)
T ss_pred cCCccceeeeccccCCcccceeeeee--c--ceEEecceeeEEEEccccccCchhhh-cccccc-ccceee----cCccc
Confidence 4321112111222223 3455444 2 3677788888887755433110 000 000000 000000 01111
Q ss_pred EEEE----ecCCceEEEec--CCcE---EEeecc--c-ccceeeeccCCCCCCCeEEEEeCCeEEEEEEcCCCCeEEEEE
Q 001387 642 HVFA----ASDRPTVIYSS--NKKL---LYSNVN--L-KEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSI 709 (1088)
Q Consensus 642 ~v~~----~~~~p~~i~~~--~~~~---~~~~l~--~-~~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~~~~~~i 709 (1088)
.+++ .+-.+|.+-+. .+.. ....+. . +.+.+. . ...+++-+++.+-..++|.++........+++
T Consensus 345 ~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~-a--iSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v 421 (691)
T KOG2048|consen 345 RLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCA-A--ISPDGNLIAISTVSRTKIYRLQPDPNVKVINV 421 (691)
T ss_pred eEEEEeccccccceeccCcccccccChhhheeeecCCccceeee-c--cCCCCCEEEEeeccceEEEEeccCcceeEEEe
Confidence 1111 12223332211 0110 001111 1 112221 1 12234457777788999999988663333322
Q ss_pred ---eCC-CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCC--CceEEEEEECC-CCceEeEEEEEEEcCCCce
Q 001387 710 ---PLG-EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQ--TFEFISTYPLD-TFEYGCSILSCSFSDDSNV 782 (1088)
Q Consensus 710 ---~l~-~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~--t~~~i~~~~~~-~~E~v~si~~~~~~~~~~~ 782 (1088)
|+- .+..++.+..+.+..+++... ...+..++.. +++.+..+.=. ..+. |+.+... ...+
T Consensus 422 ~~~~~~~~~a~~i~ftid~~k~~~~s~~---------~~~le~~el~~ps~kel~~~~~~~~~~~---I~~l~~S-sdG~ 488 (691)
T KOG2048|consen 422 DDVPLALLDASAISFTIDKNKLFLVSKN---------IFSLEEFELETPSFKELKSIQSQAKCPS---ISRLVVS-SDGN 488 (691)
T ss_pred ccchhhhccceeeEEEecCceEEEEecc---------cceeEEEEecCcchhhhhccccccCCCc---ceeEEEc-CCCC
Confidence 332 245667777666665555421 2344444332 23322221111 2222 3333223 2367
Q ss_pred EEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc---cCeEEE-EECCEEEEEEee
Q 001387 783 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF---NGKLLA-AINQKIQLYKWM 849 (1088)
Q Consensus 783 ~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~---~g~Lv~-~~g~~l~v~~~~ 849 (1088)
||||-+ +.|-|++|+++..+.+.+.. ..+-+||+...- .++|++ -.+++++-|+++
T Consensus 489 yiaa~~----------t~g~I~v~nl~~~~~~~l~~-rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~ 548 (691)
T KOG2048|consen 489 YIAAIS----------TRGQIFVYNLETLESHLLKV-RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIE 548 (691)
T ss_pred EEEEEe----------ccceEEEEEcccceeecchh-ccCcceeeeeccccccCcEEEEecCCeEEEEecc
Confidence 888776 56899999988766555442 233566665533 467765 567888888764
No 47
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=95.67 E-value=0.26 Score=54.92 Aligned_cols=213 Identities=14% Similarity=0.239 Sum_probs=117.5
Q ss_pred CCeEEEEEEcCCCCeEEEEEeC-CCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceE
Q 001387 690 EGELTIGTIDDIQKLHIRSIPL-GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYG 768 (1088)
Q Consensus 690 ~~~l~i~~l~~~~~~~~~~i~l-~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v 768 (1088)
++.+.|-.+-...+. +|...- ....+.+.+.+....|.-+..+ ..|++.|..|++++.++.. ++.+
T Consensus 236 D~~vklW~vy~~~~~-lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD----------~~lKlwDtETG~~~~~f~~--~~~~ 302 (503)
T KOG0282|consen 236 DGLVKLWNVYDDRRC-LRTFKGHRKPVRDASFNNCGTSFLSASFD----------RFLKLWDTETGQVLSRFHL--DKVP 302 (503)
T ss_pred CceEEEEEEecCcce-ehhhhcchhhhhhhhccccCCeeeeeecc----------eeeeeeccccceEEEEEec--CCCc
Confidence 566666666553322 222211 1234556666666666666554 4799999999998876654 5666
Q ss_pred eEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEE-EecCceeEecccc-C-eEEEEE-CCEEE
Q 001387 769 CSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEK-ETKGAVYSLNAFN-G-KLLAAI-NQKIQ 844 (1088)
Q Consensus 769 ~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~-~~~g~v~ai~~~~-g-~Lv~~~-g~~l~ 844 (1088)
.|++ +..++.+.+++|+ ..|+|.-|++..++ ++.+. ..-|+|..|.-+. | +.+.+. .+.+.
T Consensus 303 ~cvk---f~pd~~n~fl~G~----------sd~ki~~wDiRs~k--vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~r 367 (503)
T KOG0282|consen 303 TCVK---FHPDNQNIFLVGG----------SDKKIRQWDIRSGK--VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVR 367 (503)
T ss_pred eeee---cCCCCCcEEEEec----------CCCcEEEEeccchH--HHHHHHhhhhheeeeEEccCCceEeeeccCccEE
Confidence 6654 4545578888898 45899999998666 33332 2467888888773 3 445444 46788
Q ss_pred EEEeeeccCcccccccccccccceEEEEE---------EEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEE
Q 001387 845 LYKWMLRDDGTRELQSECGHHGHILALYV---------QTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSA 915 (1088)
Q Consensus 845 v~~~~~~~~~~~~L~~~~~~~~~~~~~~l---------~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~ 915 (1088)
+++|... -..++.......+.+ .+.+ .+.+|+|++--+ ...|+....+ ....-..+-..+.
T Consensus 368 iWe~~~~--v~ik~i~~~~~hsmP-~~~~~P~~~~~~aQs~dN~i~ifs~-----~~~~r~nkkK--~feGh~vaGys~~ 437 (503)
T KOG0282|consen 368 IWENRIP--VPIKNIADPEMHTMP-CLTLHPNGKWFAAQSMDNYIAIFST-----VPPFRLNKKK--RFEGHSVAGYSCQ 437 (503)
T ss_pred EEEcCCC--ccchhhcchhhccCc-ceecCCCCCeehhhccCceEEEEec-----ccccccCHhh--hhcceeccCceee
Confidence 8887421 122222211111111 1222 334555544111 1122221111 0111112222234
Q ss_pred EEEeeCc-eEEEEccCCcEEEEeeCC
Q 001387 916 VEILDDD-IYLGAENNFNLFTVRKNS 940 (1088)
Q Consensus 916 ~~~l~~~-~~l~~D~~gnl~~l~~~~ 940 (1088)
+.|-.++ +++.+|.+|.++++..++
T Consensus 438 v~fSpDG~~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 438 VDFSPDGRTLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred EEEcCCCCeEEeecCCccEEEeechh
Confidence 5665554 466799999999999875
No 48
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.54 E-value=4.6 Score=44.00 Aligned_cols=228 Identities=18% Similarity=0.232 Sum_probs=129.8
Q ss_pred EEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEec-
Q 001387 744 HFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETK- 822 (1088)
Q Consensus 744 s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~- 822 (1088)
-.+++++-+...+|..+.|+. ++..+++. ++-++|.-. +.||+|+|++ ++++|..+..
T Consensus 68 r~Lkv~~~Kk~~~ICe~~fpt-----~IL~VrmN---r~RLvV~Le-----------e~IyIydI~~--MklLhTI~t~~ 126 (391)
T KOG2110|consen 68 RKLKVVHFKKKTTICEIFFPT-----SILAVRMN---RKRLVVCLE-----------ESIYIYDIKD--MKLLHTIETTP 126 (391)
T ss_pred ceEEEEEcccCceEEEEecCC-----ceEEEEEc---cceEEEEEc-----------ccEEEEeccc--ceeehhhhccC
Confidence 578899888888888888774 34445554 455666642 3599999965 7777765543
Q ss_pred CceeEeccc---cC--eEEEEE---CCEEEEEEeeeccCcccccccccc---cccceEEEEEEEeCCEEEEEeccccEEE
Q 001387 823 GAVYSLNAF---NG--KLLAAI---NQKIQLYKWMLRDDGTRELQSECG---HHGHILALYVQTRGDFIVVGDLMKSISL 891 (1088)
Q Consensus 823 g~v~ai~~~---~g--~Lv~~~---g~~l~v~~~~~~~~~~~~L~~~~~---~~~~~~~~~l~~~~~~I~vgD~~~Sv~~ 891 (1088)
--+..+|.+ .+ +|.+-. ...|++|+.. .|.+... +.+...++..+..|.+|..+- -||-.+
T Consensus 127 ~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~-------nl~~v~~I~aH~~~lAalafs~~G~llATAS-eKGTVI 198 (391)
T KOG2110|consen 127 PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI-------NLQPVNTINAHKGPLAALAFSPDGTLLATAS-EKGTVI 198 (391)
T ss_pred CCccceEeeccCCCCceEEecCCCCCceEEEEEcc-------cceeeeEEEecCCceeEEEECCCCCEEEEec-cCceEE
Confidence 333333333 32 565532 2467787752 2444433 333344555666677655433 333322
Q ss_pred EEEe-ccCCeEEEEeccCCCceeEEEEEeeCceEE-EEccCCcEEEEeeCCCCCC------ccc--ccceeEEEEEEcCC
Q 001387 892 LIYK-HEEGAIEERARDYNANWMSAVEILDDDIYL-GAENNFNLFTVRKNSEGAT------DEE--RGRLEVVGEYHLGE 961 (1088)
Q Consensus 892 ~~~~-~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l-~~D~~gnl~~l~~~~~~~~------~~~--~~~L~~~~~f~lg~ 961 (1088)
=.|. ++..++.++-|-..+..+.+..|=.+..+| ++-..+.+++|+......+ ... ..++...+.-+++.
T Consensus 199 RVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps 278 (391)
T KOG2110|consen 199 RVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPS 278 (391)
T ss_pred EEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcch
Confidence 2233 456788999888888888888886666665 5556899999998642211 100 01111111115666
Q ss_pred ccceEEe--eeeee-cCCCC---------CCCCccEEEEEcccccEEEEEe
Q 001387 962 FVNRFRH--GSLVM-RLPDS---------DVGQIPTVIFGTVNGVIGVIAS 1000 (1088)
Q Consensus 962 ~v~~~~~--~~l~~-~~~~~---------~~~~~~~~l~~t~~G~i~~l~~ 1000 (1088)
+|.++.- .++.. +-+.+ .....+.+..+|.||-++.+..
T Consensus 279 ~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l 329 (391)
T KOG2110|consen 279 QVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRL 329 (391)
T ss_pred hhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEc
Confidence 6655420 01110 00111 1134578889999999997653
No 49
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.53 E-value=1.2 Score=48.24 Aligned_cols=154 Identities=17% Similarity=0.231 Sum_probs=100.1
Q ss_pred ceeeeecCCCeEEEEecCcEEEEecCCcceeeeee--CCCCCcEEEEEECCCEEEEEE----CCCeEEEEEEcCcEEEEE
Q 001387 450 TLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWK--SPPGYSVNVATANASQVLLAT----GGGHLVYLEIGDGILTEV 523 (1088)
Q Consensus 450 Ti~~~~~~~~~ivQVt~~~i~l~~~~~~~~~~~~~--~~~~~~I~~a~~~~~~lvv~~----~~~~l~~~~~~~~~l~~~ 523 (1088)
.|.+-.|...++|=+-+..|.+++.+....++.+. ||......+-+.+.....++. ..|.++++...+ +...
T Consensus 89 ~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n--l~~v 166 (391)
T KOG2110|consen 89 SILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN--LQPV 166 (391)
T ss_pred ceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc--ceee
Confidence 46666777788888999999999988755554432 345455666666654334443 346787777654 3322
Q ss_pred eec-cCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeec-CceEEEEEeC
Q 001387 524 KHA-QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFE-GISYLLCALG 601 (1088)
Q Consensus 524 ~~~-~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~-~~~~L~vgl~ 601 (1088)
..+ .-+..+.|+++++ .+..++-+..+.--|++|++|+-+.+....-+ ..|.+|.-..+. +..+|-+...
T Consensus 167 ~~I~aH~~~lAalafs~------~G~llATASeKGTVIRVf~v~~G~kl~eFRRG--~~~~~IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 167 NTINAHKGPLAALAFSP------DGTLLATASEKGTVIRVFSVPEGQKLYEFRRG--TYPVSIYSLSFSPDSQFLAASSN 238 (391)
T ss_pred eEEEecCCceeEEEECC------CCCEEEEeccCceEEEEEEcCCccEeeeeeCC--ceeeEEEEEEECCCCCeEEEecC
Confidence 221 2357899999975 35677777663446799999987776544333 235444323333 4568888999
Q ss_pred CCcEEEEEEecC
Q 001387 602 DGHLLNFLLNMK 613 (1088)
Q Consensus 602 ~G~l~~y~~~~~ 613 (1088)
.+.+..|+++..
T Consensus 239 TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 239 TETVHIFKLEKV 250 (391)
T ss_pred CCeEEEEEeccc
Confidence 999999998764
No 50
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.50 E-value=2.3 Score=44.96 Aligned_cols=197 Identities=10% Similarity=0.049 Sum_probs=113.2
Q ss_pred CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCC-ceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeee
Q 001387 713 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQT-FEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYV 791 (1088)
Q Consensus 713 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t-~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~ 791 (1088)
.+...++|+|...-++.+.+ |-+.||+.+-.. +..+..-.-.-+--+++++ | .+++ ..+..|.
T Consensus 28 DsIS~l~FSP~~~~~~~A~S---------WD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~-W--sddg-skVf~g~--- 91 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGS---------WDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVC-W--SDDG-SKVFSGG--- 91 (347)
T ss_pred cchheeEeccccCceEEecc---------cCCceEEEEEecCCcccchhhhccCCCeEEEE-E--ccCC-ceEEeec---
Confidence 45667889996665655554 336777765432 3333322222223355554 3 3333 4444454
Q ss_pred CCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccccCeE--EEEEC---CEEEEEEeeeccCccccccccccccc
Q 001387 792 LPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKL--LAAIN---QKIQLYKWMLRDDGTRELQSECGHHG 866 (1088)
Q Consensus 792 ~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~g~L--v~~~g---~~l~v~~~~~~~~~~~~L~~~~~~~~ 866 (1088)
+.|.+.+|++..+....+. .+.+||.++.-+++.+ ..+.| ++|.. |+.+. -.+......
T Consensus 92 -------~Dk~~k~wDL~S~Q~~~v~--~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKf--WD~R~-----~~pv~t~~L 155 (347)
T KOG0647|consen 92 -------CDKQAKLWDLASGQVSQVA--AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKF--WDTRS-----SNPVATLQL 155 (347)
T ss_pred -------cCCceEEEEccCCCeeeee--ecccceeEEEEecCCCcceeEecccccceee--cccCC-----CCeeeeeec
Confidence 4567888998877665555 5688999988887765 45555 34544 32221 111222233
Q ss_pred ceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEe--ccCCCceeEEEEEeeCceEEEEccCCcEEEEeeCCCCC
Q 001387 867 HILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERA--RDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGA 943 (1088)
Q Consensus 867 ~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~--~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~~~~~ 943 (1088)
+--..++++...+.+|+.+-+++.++..+..+..+.... --++.|.+ +.|-+.+.++.+--+|-+.+...++..+
T Consensus 156 PeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~v--a~f~d~~~~alGsiEGrv~iq~id~~~~ 232 (347)
T KOG0647|consen 156 PERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCV--ACFQDKDGFALGSIEGRVAIQYIDDPNP 232 (347)
T ss_pred cceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEE--EEEecCCceEeeeecceEEEEecCCCCc
Confidence 323445677788999999999998877654333222211 11222332 2355666777777899999988876443
No 51
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=95.43 E-value=0.42 Score=48.79 Aligned_cols=118 Identities=17% Similarity=0.245 Sum_probs=84.2
Q ss_pred CeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCce
Q 001387 703 KLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 782 (1088)
Q Consensus 703 ~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~ 782 (1088)
..-++++.+...++.+.++++.+.+.++. .++|+|.|++++..+.+|+++-+- .+.+|.. +++
T Consensus 175 gt~v~sL~~~s~VtSlEvs~dG~ilTia~-----------gssV~Fwdaksf~~lKs~k~P~nV-----~SASL~P-~k~ 237 (334)
T KOG0278|consen 175 GTEVQSLEFNSPVTSLEVSQDGRILTIAY-----------GSSVKFWDAKSFGLLKSYKMPCNV-----ESASLHP-KKE 237 (334)
T ss_pred CcEEEEEecCCCCcceeeccCCCEEEEec-----------CceeEEeccccccceeeccCcccc-----ccccccC-CCc
Confidence 45678899999999999999888776663 478999999999999999888543 3334443 357
Q ss_pred EEEEEeeeeCCCCCCCcceEEEEEEEeCC-eEEEEEEEEecCceeEeccccCeEEEEEC---CEEEEEEe
Q 001387 783 YYCVGTAYVLPEENEPTKGRILVFIVEDG-KLQLIAEKETKGAVYSLNAFNGKLLAAIN---QKIQLYKW 848 (1088)
Q Consensus 783 ~i~VGT~~~~~~e~~~~~Gri~v~~i~~~-kl~~~~~~~~~g~v~ai~~~~g~Lv~~~g---~~l~v~~~ 848 (1088)
++|.|- |+ +.+|.|+..-+ .+.. +.+...|||.|+.--.+-.++|.| .+|+++..
T Consensus 238 ~fVaGg------ed----~~~~kfDy~TgeEi~~-~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 238 FFVAGG------ED----FKVYKFDYNTGEEIGS-YNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT 296 (334)
T ss_pred eEEecC------cc----eEEEEEeccCCceeee-cccCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence 777663 32 67777777632 2332 456789999999977666666666 45777553
No 52
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.28 E-value=0.97 Score=53.62 Aligned_cols=141 Identities=21% Similarity=0.258 Sum_probs=86.4
Q ss_pred CCeEEEEeCCeEEEEEEcCCCCeEEEEEeCCC--ccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEE
Q 001387 682 PDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE--HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIST 759 (1088)
Q Consensus 682 ~~~l~~~~~~~l~i~~l~~~~~~~~~~i~l~~--tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~ 759 (1088)
|.|..|++.+.=+.+++........-+|-.|. ....+.|||+.+..+-.+++ .++|+.|..++..+--
T Consensus 503 P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD----------~tVRlWDv~~G~~VRi 572 (707)
T KOG0263|consen 503 PRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSD----------RTVRLWDVSTGNSVRI 572 (707)
T ss_pred CCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCC----------ceEEEEEcCCCcEEEE
Confidence 34667766444444566554444444555543 56779999998877766554 3788888877776654
Q ss_pred EECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cCeEEEE
Q 001387 760 YPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAA 838 (1088)
Q Consensus 760 ~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g~Lv~~ 838 (1088)
| .+++ -.+..+.+.. ...|++-|. .-|+|.+|++.++++-.... .+.|.|+++.-- +|.++++
T Consensus 573 F---~GH~-~~V~al~~Sp-~Gr~LaSg~----------ed~~I~iWDl~~~~~v~~l~-~Ht~ti~SlsFS~dg~vLas 636 (707)
T KOG0263|consen 573 F---TGHK-GPVTALAFSP-CGRYLASGD----------EDGLIKIWDLANGSLVKQLK-GHTGTIYSLSFSRDGNVLAS 636 (707)
T ss_pred e---cCCC-CceEEEEEcC-CCceEeecc----------cCCcEEEEEcCCCcchhhhh-cccCceeEEEEecCCCEEEe
Confidence 4 2232 1222333332 356777664 45899999998766433222 228999998843 5655554
Q ss_pred --ECCEEEEEEe
Q 001387 839 --INQKIQLYKW 848 (1088)
Q Consensus 839 --~g~~l~v~~~ 848 (1088)
.++.|.+|++
T Consensus 637 gg~DnsV~lWD~ 648 (707)
T KOG0263|consen 637 GGADNSVRLWDL 648 (707)
T ss_pred cCCCCeEEEEEc
Confidence 4477888765
No 53
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=95.10 E-value=4.3 Score=45.74 Aligned_cols=38 Identities=18% Similarity=0.528 Sum_probs=26.3
Q ss_pred CceEEEEEeeeeCCCCCCCcceEEEEEEEeCCe--EEEEEEEEecCceeEec
Q 001387 780 SNVYYCVGTAYVLPEENEPTKGRILVFIVEDGK--LQLIAEKETKGAVYSLN 829 (1088)
Q Consensus 780 ~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~k--l~~~~~~~~~g~v~ai~ 829 (1088)
...|+++|+ .+|+|+.|++...| +++++.++ ..|++|+
T Consensus 261 ~G~~L~aG~----------s~G~~i~YD~R~~k~Pv~v~sah~--~sVt~va 300 (673)
T KOG4378|consen 261 CGTYLCAGN----------SKGELIAYDMRSTKAPVAVRSAHD--ASVTRVA 300 (673)
T ss_pred CceEEEeec----------CCceEEEEecccCCCCceEeeecc--cceeEEE
Confidence 356888887 67999999998443 55555443 3477765
No 54
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.09 E-value=4.1 Score=45.89 Aligned_cols=190 Identities=13% Similarity=0.091 Sum_probs=116.2
Q ss_pred cCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCc-eEeEEEEEEEcCCCceEEEEEeeeeCC
Q 001387 715 PRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFE-YGCSILSCSFSDDSNVYYCVGTAYVLP 793 (1088)
Q Consensus 715 p~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E-~v~si~~~~~~~~~~~~i~VGT~~~~~ 793 (1088)
.+.+-|+|..++.++.+++. ..+++.|..+..+ .+++..+| ++-|.... ....+.++-|.
T Consensus 113 v~~~~f~~~d~t~l~s~sDd---------~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~---~~~~hivvtGs----- 173 (487)
T KOG0310|consen 113 VHVTKFSPQDNTMLVSGSDD---------KVVKYWDLSTAYV--QAELSGHTDYVRCGDIS---PANDHIVVTGS----- 173 (487)
T ss_pred eeEEEecccCCeEEEecCCC---------ceEEEEEcCCcEE--EEEecCCcceeEeeccc---cCCCeEEEecC-----
Confidence 34456788888888887754 5677777766654 55665554 34444332 22234444343
Q ss_pred CCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccccC-e-EEEEECCEEEEEEeeeccCcccccccccccccceEEE
Q 001387 794 EENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNG-K-LLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILAL 871 (1088)
Q Consensus 794 ~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~g-~-Lv~~~g~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~ 871 (1088)
.-|.|.+|++.-.. ..+.+.++.-||-+++.+.+ . ++.|.|+.+.++++. .|.+.+.....+.- .++
T Consensus 174 -----YDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~---~G~qll~~~~~H~K--tVT 242 (487)
T KOG0310|consen 174 -----YDGKVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLT---TGGQLLTSMFNHNK--TVT 242 (487)
T ss_pred -----CCceEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEec---CCceehhhhhcccc--eEE
Confidence 44889999886433 66778888999999999954 4 556777999997762 24344433332222 345
Q ss_pred EEEE--eCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCc-eEEEEccCCcEEEEee
Q 001387 872 YVQT--RGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDD-IYLGAENNFNLFTVRK 938 (1088)
Q Consensus 872 ~l~~--~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~-~~l~~D~~gnl~~l~~ 938 (1088)
||.. .+.+++-|-+-.-|.++. ..+.+++ ..=..|-.+.++..-+++ +++++=.+|-+.+-+.
T Consensus 243 cL~l~s~~~rLlS~sLD~~VKVfd--~t~~Kvv--~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 243 CLRLASDSTRLLSGSLDRHVKVFD--TTNYKVV--HSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred EEEeecCCceEeecccccceEEEE--ccceEEE--EeeecccceeeEEecCCCceEEEecccceeeeehh
Confidence 5544 457899998888888764 3444443 333345556666665554 4444545666665533
No 55
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.09 E-value=6.5 Score=43.04 Aligned_cols=236 Identities=11% Similarity=0.198 Sum_probs=112.0
Q ss_pred EEEEEE-CCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCC
Q 001387 500 QVLLAT-GGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGG 578 (1088)
Q Consensus 500 ~lvv~~-~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~ 578 (1088)
.++++. .++.+..++...++... ..+....+.++++.+ ....++++...++.+.+|++.+.+.+......
T Consensus 44 ~l~~~~~~~~~v~~~d~~~~~~~~--~~~~~~~~~~~~~~~------~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~- 114 (300)
T TIGR03866 44 LLYVCASDSDTIQVIDLATGEVIG--TLPSGPDPELFALHP------NGKILYIANEDDNLVTVIDIETRKVLAEIPVG- 114 (300)
T ss_pred EEEEEECCCCeEEEEECCCCcEEE--eccCCCCccEEEECC------CCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-
Confidence 443332 34566665655443322 122223345566643 24566666665889999999765544332221
Q ss_pred CcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEecCC-ceE-EEe-
Q 001387 579 EIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDR-PTV-IYS- 655 (1088)
Q Consensus 579 ~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~-p~~-i~~- 655 (1088)
..|.++.+.+ +...++++..++....+ ++..++.+. .....+..|..+ .+. .+...+++.++. ..+ ++.
T Consensus 115 -~~~~~~~~~~--dg~~l~~~~~~~~~~~~-~d~~~~~~~--~~~~~~~~~~~~-~~s-~dg~~l~~~~~~~~~v~i~d~ 186 (300)
T TIGR03866 115 -VEPEGMAVSP--DGKIVVNTSETTNMAHF-IDTKTYEIV--DNVLVDQRPRFA-EFT-ADGKELWVSSEIGGTVSVIDV 186 (300)
T ss_pred -CCcceEEECC--CCCEEEEEecCCCeEEE-EeCCCCeEE--EEEEcCCCccEE-EEC-CCCCEEEEEcCCCCEEEEEEc
Confidence 2456665543 34566677766654322 343332221 112233444322 222 123345454432 222 221
Q ss_pred cCCcE-EEeecccccc--eeeeccCCCCCCCe-EEEE---eCCeEEEEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEE
Q 001387 656 SNKKL-LYSNVNLKEV--SHMCPFNSAAFPDS-LAIA---KEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFA 728 (1088)
Q Consensus 656 ~~~~~-~~~~l~~~~i--~~~~~f~~~~~~~~-l~~~---~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~ 728 (1088)
..++. .-........ ..+.+......+++ .+++ .++.+.+-.+... -..+.+..+..|..+.++|..+.++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~g~~l~ 264 (300)
T TIGR03866 187 ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY--EVLDYLLVGQRVWQLAFTPDEKYLL 264 (300)
T ss_pred CcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC--cEEEEEEeCCCcceEEECCCCCEEE
Confidence 11221 1000000000 01111100011222 2222 2456666555432 2234556677899999999888765
Q ss_pred EEEeecCCCcCcceeEEEEEEeCCCceEEEEEECC
Q 001387 729 ICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD 763 (1088)
Q Consensus 729 v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~ 763 (1088)
++... ...|.++|..+++.+.++++.
T Consensus 265 ~~~~~---------~~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 265 TTNGV---------SNDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred EEcCC---------CCeEEEEECCCCcEEEEEEcc
Confidence 54322 257999999999998888764
No 56
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=94.95 E-value=1 Score=50.48 Aligned_cols=206 Identities=13% Similarity=0.132 Sum_probs=110.2
Q ss_pred eEEEEeCCeEEEEEEcCCC-CeEEEEEeCC-CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEE
Q 001387 684 SLAIAKEGELTIGTIDDIQ-KLHIRSIPLG-EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYP 761 (1088)
Q Consensus 684 ~l~~~~~~~l~i~~l~~~~-~~~~~~i~l~-~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~ 761 (1088)
++..++++.=.+.++.+.+ ++..|++.=. .|...+.|. ....|+...+. .+.|-+...+|..--..+.
T Consensus 91 S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN-~~DeyiAsvs~---------gGdiiih~~~t~~~tt~f~ 160 (673)
T KOG4378|consen 91 SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYN-NTDEYIASVSD---------GGDIIIHGTKTKQKTTTFT 160 (673)
T ss_pred ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEec-CCcceeEEecc---------CCcEEEEecccCcccccee
Confidence 3445555444455555543 4444544321 345555555 33344433322 2445555555544434455
Q ss_pred CCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEe--ccccCeEEEEE
Q 001387 762 LDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSL--NAFNGKLLAAI 839 (1088)
Q Consensus 762 ~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai--~~~~g~Lv~~~ 839 (1088)
.+.+..+ ..+.+..- +.+++ |++ ..+|.+.+|++...+-..-..+.++.|...| ++.+..|++++
T Consensus 161 ~~sgqsv---Rll~ys~s-kr~lL-~~a--------sd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsV 227 (673)
T KOG4378|consen 161 IDSGQSV---RLLRYSPS-KRFLL-SIA--------SDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSV 227 (673)
T ss_pred cCCCCeE---EEeecccc-cceee-Eee--------ccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEe
Confidence 5555554 33334332 33333 333 2569999999975443333334455555544 45588899888
Q ss_pred C--CEEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEE
Q 001387 840 N--QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVE 917 (1088)
Q Consensus 840 g--~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~ 917 (1088)
| .+|++|+. +.+++...-.|.++...+...-+|-++.+|....-+.+|..+..+.-+..+. .+...|+++.
T Consensus 228 G~Dkki~~yD~-----~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~s--ah~~sVt~va 300 (673)
T KOG4378|consen 228 GYDKKINIYDI-----RSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRS--AHDASVTRVA 300 (673)
T ss_pred cccceEEEeec-----ccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEee--ecccceeEEE
Confidence 8 67777763 4566666556666666666666777888888888776554443332232222 2223366655
Q ss_pred Ee
Q 001387 918 IL 919 (1088)
Q Consensus 918 ~l 919 (1088)
|.
T Consensus 301 fq 302 (673)
T KOG4378|consen 301 FQ 302 (673)
T ss_pred ee
Confidence 54
No 57
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.92 E-value=6.4 Score=42.06 Aligned_cols=195 Identities=12% Similarity=0.104 Sum_probs=111.2
Q ss_pred EEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecC
Q 001387 744 HFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKG 823 (1088)
Q Consensus 744 s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g 823 (1088)
+.+.+.+.++|+.+.++.=-.+. |+.+..- ..++--|.||+- +.+-.|++.++|--.+.......
T Consensus 107 G~i~iw~~~~W~~~~slK~H~~~-Vt~lsiH---PS~KLALsVg~D-----------~~lr~WNLV~Gr~a~v~~L~~~a 171 (362)
T KOG0294|consen 107 GHIIIWRVGSWELLKSLKAHKGQ-VTDLSIH---PSGKLALSVGGD-----------QVLRTWNLVRGRVAFVLNLKNKA 171 (362)
T ss_pred CcEEEEEcCCeEEeeeecccccc-cceeEec---CCCceEEEEcCC-----------ceeeeehhhcCccceeeccCCcc
Confidence 67888999999998877655544 5554431 223445666652 45666776655433333222211
Q ss_pred ceeEeccccCeEEEEECCEEEEEEeeeccCcccccccccccccceEEEEEEE-eCCEEEEEeccccEEEEEEeccCCeEE
Q 001387 824 AVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQT-RGDFIVVGDLMKSISLLIYKHEEGAIE 902 (1088)
Q Consensus 824 ~v~ai~~~~g~Lv~~~g~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~-~~~~I~vgD~~~Sv~~~~~~~~~~~l~ 902 (1088)
-...-.+-+++.++..-++|-+|+++. .++.+..... .-+.++.. .++.++||=-..-+.+ ++.++ ...
T Consensus 172 t~v~w~~~Gd~F~v~~~~~i~i~q~d~-----A~v~~~i~~~--~r~l~~~~l~~~~L~vG~d~~~i~~--~D~ds-~~~ 241 (362)
T KOG0294|consen 172 TLVSWSPQGDHFVVSGRNKIDIYQLDN-----ASVFREIENP--KRILCATFLDGSELLVGGDNEWISL--KDTDS-DTP 241 (362)
T ss_pred eeeEEcCCCCEEEEEeccEEEEEeccc-----HhHhhhhhcc--ccceeeeecCCceEEEecCCceEEE--eccCC-Ccc
Confidence 111111224678888899999999741 2232222211 11233333 3567777655555443 45442 222
Q ss_pred EEeccCCCceeEEEEEeeC--ce-EEEEccCCcEEEEeeCCCCCCcccccceeEEEEEEcCCccceEEe
Q 001387 903 ERARDYNANWMSAVEILDD--DI-YLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRH 968 (1088)
Q Consensus 903 ~~~~D~~~~~v~~~~~l~~--~~-~l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~ 968 (1088)
+.--+.++..|-++.+..+ .. ++.+-.+|-|.+.+.+.+.. .+-...+++++|.++||++-
T Consensus 242 ~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k-----~~~~~l~e~n~~~RltCl~~ 305 (362)
T KOG0294|consen 242 LTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETK-----KRPTLLAELNTNVRLTCLRV 305 (362)
T ss_pred ceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccccc-----CCcceeEEeecCCccceeee
Confidence 2222445666777765544 23 45677899999998876432 23346789999999999863
No 58
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.91 E-value=1.3 Score=52.95 Aligned_cols=156 Identities=16% Similarity=0.154 Sum_probs=99.4
Q ss_pred CCccCeEEEecCCCEEEE-EEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeee
Q 001387 712 GEHPRRICHQEQSRTFAI-CSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAY 790 (1088)
Q Consensus 712 ~~tp~~i~y~~~~~~~~v-~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~ 790 (1088)
..-++.|+|+|--.-|.+ ++.+ ..+|+.+-...++++-++++ |.|+++|.. . ..++.+|||
T Consensus 409 ndfVTcVaFnPvDDryFiSGSLD----------~KvRiWsI~d~~Vv~W~Dl~--~lITAvcy~---P-dGk~avIGt-- 470 (712)
T KOG0283|consen 409 NDFVTCVAFNPVDDRYFISGSLD----------GKVRLWSISDKKVVDWNDLR--DLITAVCYS---P-DGKGAVIGT-- 470 (712)
T ss_pred CCeeEEEEecccCCCcEeecccc----------cceEEeecCcCeeEeehhhh--hhheeEEec---c-CCceEEEEE--
Confidence 345667888886555544 3433 56888888778888877777 788887753 2 368999999
Q ss_pred eCCCCCCCcceEEEEEEEeCCeEEEEEE------EEecC-ceeEecccc---Ce-EEEEECCEEEEEEeeeccCcccccc
Q 001387 791 VLPEENEPTKGRILVFIVEDGKLQLIAE------KETKG-AVYSLNAFN---GK-LLAAINQKIQLYKWMLRDDGTRELQ 859 (1088)
Q Consensus 791 ~~~~e~~~~~Gri~v~~i~~~kl~~~~~------~~~~g-~v~ai~~~~---g~-Lv~~~g~~l~v~~~~~~~~~~~~L~ 859 (1088)
-.|..++|...+.|+..-.. ++.++ .||.++.+. +. ||.+...+|+||+..+++ -..++.
T Consensus 471 --------~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~-lv~KfK 541 (712)
T KOG0283|consen 471 --------FNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD-LVHKFK 541 (712)
T ss_pred --------eccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchh-hhhhhc
Confidence 46899999998877654221 22223 589888773 33 455666999999963222 123343
Q ss_pred cccccccceEEEEEEEeCCEEEEEeccccEEEEEEe
Q 001387 860 SECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYK 895 (1088)
Q Consensus 860 ~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~ 895 (1088)
+......+. --++...|.+|+.|---..|.+.+++
T Consensus 542 G~~n~~SQ~-~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 542 GFRNTSSQI-SASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred ccccCCcce-eeeEccCCCEEEEeecCceEEEEeCC
Confidence 332222222 23455678899998855556555543
No 59
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=94.82 E-value=0.66 Score=51.90 Aligned_cols=219 Identities=12% Similarity=0.114 Sum_probs=131.9
Q ss_pred eEEEEe-CCeEEEEEEcCCCCeEEEEEeCCCccCeEEEecCC-CEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEE
Q 001387 684 SLAIAK-EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQS-RTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYP 761 (1088)
Q Consensus 684 ~l~~~~-~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~-~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~ 761 (1088)
.|+.+. +..+++-..+ ..-...++.++..|..+-|+|+. +.|+++.++ +.|+..|-.+.+++..|.
T Consensus 272 ~fLS~sfD~~lKlwDtE--TG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd----------~ki~~wDiRs~kvvqeYd 339 (503)
T KOG0282|consen 272 SFLSASFDRFLKLWDTE--TGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSD----------KKIRQWDIRSGKVVQEYD 339 (503)
T ss_pred eeeeeecceeeeeeccc--cceEEEEEecCCCceeeecCCCCCcEEEEecCC----------CcEEEEeccchHHHHHHH
Confidence 444444 5555543333 35678899999999999999988 888888765 478888988888765543
Q ss_pred CCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEe-CCeEEEEEEE-EecCceeEeccccCeEEE-E
Q 001387 762 LDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE-DGKLQLIAEK-ETKGAVYSLNAFNGKLLA-A 838 (1088)
Q Consensus 762 ~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~-~~kl~~~~~~-~~~g~v~ai~~~~g~Lv~-~ 838 (1088)
++.-++..++|-.+++.|+- |+ --+.+.+|+.. .-.++++... .+.-|..++.+.++.+++ +
T Consensus 340 ----~hLg~i~~i~F~~~g~rFis--sS---------Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs 404 (503)
T KOG0282|consen 340 ----RHLGAILDITFVDEGRRFIS--SS---------DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQS 404 (503)
T ss_pred ----hhhhheeeeEEccCCceEee--ec---------cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhc
Confidence 34445555666655555543 22 12378888876 3345555443 345566666666665544 6
Q ss_pred ECCEEEEEEeeeccCcccccccccccccc---eEEEEEEE--eCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCcee
Q 001387 839 INQKIQLYKWMLRDDGTRELQSECGHHGH---ILALYVQT--RGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWM 913 (1088)
Q Consensus 839 ~g~~l~v~~~~~~~~~~~~L~~~~~~~~~---~~~~~l~~--~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v 913 (1088)
+++.+.+|....+ -++.+.-.+.++ -+++.+.. .|.+++-||.--.+.++.|+.. ++.-.-+-. ...|
T Consensus 405 ~dN~i~ifs~~~~----~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~--kl~~~lkah-~~~c 477 (503)
T KOG0282|consen 405 MDNYIAIFSTVPP----FRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT--KLVSKLKAH-DQPC 477 (503)
T ss_pred cCceEEEEecccc----cccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh--hhhhccccC-Ccce
Confidence 7788888885422 223332222222 24555443 5779999999999998877653 221111111 1233
Q ss_pred EEEEEeeC--ceEEEEccCCcEEEE
Q 001387 914 SAVEILDD--DIYLGAENNFNLFTV 936 (1088)
Q Consensus 914 ~~~~~l~~--~~~l~~D~~gnl~~l 936 (1088)
+.+..-.. ..++.++-+|-|.++
T Consensus 478 i~v~wHP~e~Skvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 478 IGVDWHPVEPSKVATCGWDGLIKIW 502 (503)
T ss_pred EEEEecCCCcceeEecccCceeEec
Confidence 34433333 347778888877654
No 60
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.80 E-value=6.9 Score=41.89 Aligned_cols=255 Identities=14% Similarity=0.170 Sum_probs=140.6
Q ss_pred cCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECC-CCceEeEEEEEEEcCCCceE-EEEEeeeeC
Q 001387 715 PRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD-TFEYGCSILSCSFSDDSNVY-YCVGTAYVL 792 (1088)
Q Consensus 715 p~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~-~~E~v~si~~~~~~~~~~~~-i~VGT~~~~ 792 (1088)
+..+.+..+..+|+|++.+ -.++++-+-++.-.+-++. .+ ..+..+-+. .+| -+||.+..
T Consensus 8 ~lsvs~NQD~ScFava~~~-----------Gfriyn~~P~ke~~~r~~~~~G---~~~veMLfR---~N~laLVGGg~~- 69 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDT-----------GFRIYNCDPFKESASRQFIDGG---FKIVEMLFR---SNYLALVGGGSR- 69 (346)
T ss_pred eeEEEEccCCceEEEEecC-----------ceEEEecCchhhhhhhccccCc---hhhhhHhhh---hceEEEecCCCC-
Confidence 3347777888889888753 2444433323332222222 22 222222222 344 45664321
Q ss_pred CCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccccCeEEEEECCEEEEEEeeec----------c--Cc------
Q 001387 793 PEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLR----------D--DG------ 854 (1088)
Q Consensus 793 ~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~g~Lv~~~g~~l~v~~~~~~----------~--~~------ 854 (1088)
..-..-.+++|+ +.|=+.+.+.++.++|.+|+--.++|++..-+++++|.+... . .|
T Consensus 70 ---pky~pNkviIWD--D~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~ 144 (346)
T KOG2111|consen 70 ---PKYPPNKVIIWD--DLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCP 144 (346)
T ss_pred ---CCCCCceEEEEe--cccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecC
Confidence 223445788887 667777888899999999998899999999999999998410 0 00
Q ss_pred ---------------cccccccccccc-----------ceEEEEEEEeCCEEEEEeccccEEEEEEecc-CCeEEEEecc
Q 001387 855 ---------------TRELQSECGHHG-----------HILALYVQTRGDFIVVGDLMKSISLLIYKHE-EGAIEERARD 907 (1088)
Q Consensus 855 ---------------~~~L~~~~~~~~-----------~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~-~~~l~~~~~D 907 (1088)
+.++...+.... .+..+.|.-.|.+ ++.-..+|--+=-|+.+ ...+.++-|-
T Consensus 145 ~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~-vATaStkGTLIRIFdt~~g~~l~E~RRG 223 (346)
T KOG2111|consen 145 TSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTL-VATASTKGTLIRIFDTEDGTLLQELRRG 223 (346)
T ss_pred CCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccE-EEEeccCcEEEEEEEcCCCcEeeeeecC
Confidence 000100000000 0011223333443 34445556544457765 4567888888
Q ss_pred CCCceeEEEEEeeCceE-EEEccCCcEEEEeeCCCCCCcccc-----cc--e-------eEEEEEEcCCccceEEeeeee
Q 001387 908 YNANWMSAVEILDDDIY-LGAENNFNLFTVRKNSEGATDEER-----GR--L-------EVVGEYHLGEFVNRFRHGSLV 972 (1088)
Q Consensus 908 ~~~~~v~~~~~l~~~~~-l~~D~~gnl~~l~~~~~~~~~~~~-----~~--L-------~~~~~f~lg~~v~~~~~~~l~ 972 (1088)
..+-.+.++.|=.+..+ .++.+.|.+++|..-....+..+. .+ | -..+.|++.+.-.++.-
T Consensus 224 ~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~---- 299 (346)
T KOG2111|consen 224 VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIA---- 299 (346)
T ss_pred CchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEE----
Confidence 88888888887666665 466778999999876433221100 01 1 12334444433222110
Q ss_pred ecCCCCCCCCccEEEEEcccccEEEEEecCh
Q 001387 973 MRLPDSDVGQIPTVIFGTVNGVIGVIASLPH 1003 (1088)
Q Consensus 973 ~~~~~~~~~~~~~~l~~t~~G~i~~l~~l~~ 1003 (1088)
| ......++..+.||+.+.+.--.+
T Consensus 300 --f----g~~~nsvi~i~~Dgsy~k~~f~~~ 324 (346)
T KOG2111|consen 300 --F----GSETNTVIAICADGSYYKFKFDPK 324 (346)
T ss_pred --e----cCCCCeEEEEEeCCcEEEEEeccc
Confidence 1 112257777889999987766544
No 61
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=94.78 E-value=1.1 Score=47.42 Aligned_cols=208 Identities=16% Similarity=0.207 Sum_probs=114.8
Q ss_pred EEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cCeEEE--EECCEEEEEEeee
Q 001387 774 CSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLA--AINQKIQLYKWML 850 (1088)
Q Consensus 774 ~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g~Lv~--~~g~~l~v~~~~~ 850 (1088)
++|.. -..|+|||+ ..||+.+|+..-.++--+. ..+--||+++|=- +|+.+. +....+.++++
T Consensus 29 ~~Fs~-~G~~lAvGc----------~nG~vvI~D~~T~~iar~l-saH~~pi~sl~WS~dgr~LltsS~D~si~lwDl-- 94 (405)
T KOG1273|consen 29 CQFSR-WGDYLAVGC----------ANGRVVIYDFDTFRIARML-SAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDL-- 94 (405)
T ss_pred EEecc-Ccceeeeec----------cCCcEEEEEccccchhhhh-hccccceeEEEecCCCCEeeeecCCceeEEEec--
Confidence 45654 357999998 4599999998733311100 1233477777744 565443 44567777664
Q ss_pred ccCcccccccccccccceEEEEEEEe-CCEEEEEeccccEEEEEEeccCCeEEEEeccCCC-c-eeEEEEEeeC--ceEE
Q 001387 851 RDDGTRELQSECGHHGHILALYVQTR-GDFIVVGDLMKSISLLIYKHEEGAIEERARDYNA-N-WMSAVEILDD--DIYL 925 (1088)
Q Consensus 851 ~~~~~~~L~~~~~~~~~~~~~~l~~~-~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~-~-~v~~~~~l~~--~~~l 925 (1088)
. .|. +.....++.++...+..-. .|..++.=+.++-.++.|.. .+-..++.|... . .+-++.+.+. +.++
T Consensus 95 ~-~gs--~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~--~~h~~Lp~d~d~dln~sas~~~fdr~g~yIi 169 (405)
T KOG1273|consen 95 L-KGS--PLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD--PKHSVLPKDDDGDLNSSASHGVFDRRGKYII 169 (405)
T ss_pred c-CCC--ceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecC--CceeeccCCCccccccccccccccCCCCEEE
Confidence 2 232 3333333444433333333 56777777777777777764 445555555433 2 2222333333 2467
Q ss_pred EEccCCcEEEEeeCCCCCCcccccceeEEEEEEcCCccceEEeeeeeecCCCCCCCCccEEEEEcccccEEEE--EecCh
Q 001387 926 GAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVI--ASLPH 1003 (1088)
Q Consensus 926 ~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~~l~~t~~G~i~~l--~~l~~ 1003 (1088)
++...|-|.+|... .++.++.|.+-+ ++.++..-+. ..+..++.-|.|--|-.+ ..|..
T Consensus 170 tGtsKGkllv~~a~----------t~e~vas~rits-~~~IK~I~~s--------~~g~~liiNtsDRvIR~ye~~di~~ 230 (405)
T KOG1273|consen 170 TGTSKGKLLVYDAE----------TLECVASFRITS-VQAIKQIIVS--------RKGRFLIINTSDRVIRTYEISDIDD 230 (405)
T ss_pred EecCcceEEEEecc----------hheeeeeeeech-heeeeEEEEe--------ccCcEEEEecCCceEEEEehhhhcc
Confidence 88889999998753 467778887655 4444433222 234566777777766433 22211
Q ss_pred ----hHHHHHHHHHHHHHhc
Q 001387 1004 ----EQYLFLEKLQTNLRKV 1019 (1088)
Q Consensus 1004 ----~~~~~L~~lq~~l~~~ 1019 (1088)
.+-+..+++|..+.+.
T Consensus 231 ~~r~~e~e~~~K~qDvVNk~ 250 (405)
T KOG1273|consen 231 EGRDGEVEPEHKLQDVVNKL 250 (405)
T ss_pred cCccCCcChhHHHHHHHhhh
Confidence 1334446666655553
No 62
>PLN00181 protein SPA1-RELATED; Provisional
Probab=94.74 E-value=18 Score=46.34 Aligned_cols=218 Identities=15% Similarity=0.186 Sum_probs=111.9
Q ss_pred CCeEEEEEEcCC----C--CeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECC
Q 001387 690 EGELTIGTIDDI----Q--KLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD 763 (1088)
Q Consensus 690 ~~~l~i~~l~~~----~--~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~ 763 (1088)
++.+++-.+... . ..+...+.-......+++++..+.+++.+... +.|++.|..+++.+..++-.
T Consensus 504 D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~D---------g~v~lWd~~~~~~~~~~~~H 574 (793)
T PLN00181 504 NKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFE---------GVVQVWDVARSQLVTEMKEH 574 (793)
T ss_pred CCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCC---------CeEEEEECCCCeEEEEecCC
Confidence 566666655321 0 11222333233456677776554444444322 68999998888776655422
Q ss_pred CCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc--cCe-EEEEE-
Q 001387 764 TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF--NGK-LLAAI- 839 (1088)
Q Consensus 764 ~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~--~g~-Lv~~~- 839 (1088)
...+.++. +......+++.|. ..|.+.+|++..++. +......+.|.++.-. +|. |++|.
T Consensus 575 -~~~V~~l~---~~p~~~~~L~Sgs----------~Dg~v~iWd~~~~~~--~~~~~~~~~v~~v~~~~~~g~~latgs~ 638 (793)
T PLN00181 575 -EKRVWSID---YSSADPTLLASGS----------DDGSVKLWSINQGVS--IGTIKTKANICCVQFPSESGRSLAFGSA 638 (793)
T ss_pred -CCCEEEEE---EcCCCCCEEEEEc----------CCCEEEEEECCCCcE--EEEEecCCCeEEEEEeCCCCCEEEEEeC
Confidence 22344443 3322356777775 347899999875432 2233345677777642 354 44333
Q ss_pred CCEEEEEEeeeccCcccccccccccccceEEEEEEE-eCCEEEEEeccccEEEEEEecc-----CCeEEEEeccCCCcee
Q 001387 840 NQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQT-RGDFIVVGDLMKSISLLIYKHE-----EGAIEERARDYNANWM 913 (1088)
Q Consensus 840 g~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~-~~~~I~vgD~~~Sv~~~~~~~~-----~~~l~~~~~D~~~~~v 913 (1088)
.+.|++|++. . +...+.....+.. .+.++.. .+++++.|..-..+.++..... ...+..+.. +...+
T Consensus 639 dg~I~iwD~~--~-~~~~~~~~~~h~~--~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g--h~~~i 711 (793)
T PLN00181 639 DHKVYYYDLR--N-PKLPLCTMIGHSK--TVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG--HTNVK 711 (793)
T ss_pred CCeEEEEECC--C-CCccceEecCCCC--CEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC--CCCCe
Confidence 3577776652 1 1111211111111 2333443 4568888877777777554321 112222221 22233
Q ss_pred EEEEEeeCc-eEEEEccCCcEEEEeeC
Q 001387 914 SAVEILDDD-IYLGAENNFNLFTVRKN 939 (1088)
Q Consensus 914 ~~~~~l~~~-~~l~~D~~gnl~~l~~~ 939 (1088)
..+.+-.++ .++++..+|.+.++...
T Consensus 712 ~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 712 NFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred eEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 334443333 45667789999998754
No 63
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=2 Score=47.25 Aligned_cols=222 Identities=12% Similarity=0.146 Sum_probs=107.4
Q ss_pred EEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecCcc
Q 001387 549 IAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQ 628 (1088)
Q Consensus 549 ~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~ 628 (1088)
.+.++.- ++.|.|++++.-..+...... ..+-|.+.. .++..+++.|+.+|.+++|.+...++.+... .-.+...
T Consensus 208 Ll~~asl-~nkiki~dlet~~~vssy~a~--~~~wSC~wD-lde~h~IYaGl~nG~VlvyD~R~~~~~~~e~-~a~~t~~ 282 (463)
T KOG1645|consen 208 LLGLASL-GNKIKIMDLETSCVVSSYIAY--NQIWSCCWD-LDERHVIYAGLQNGMVLVYDMRQPEGPLMEL-VANVTIN 282 (463)
T ss_pred eeeeecc-CceEEEEecccceeeeheecc--CCceeeeec-cCCcceeEEeccCceEEEEEccCCCchHhhh-hhhhccC
Confidence 5566655 889999999864444333332 245565533 4558999999999999999987655432110 0012233
Q ss_pred ce-eEEEEEeC---CceEEEEecCCc--eEEE-ecCCcE-EEeecccccceeeeccCCCCCCCeEEEE-eC------CeE
Q 001387 629 PI-TLRTFSSK---NTTHVFAASDRP--TVIY-SSNKKL-LYSNVNLKEVSHMCPFNSAAFPDSLAIA-KE------GEL 693 (1088)
Q Consensus 629 pv-~l~~~~~~---~~~~v~~~~~~p--~~i~-~~~~~~-~~~~l~~~~i~~~~~f~~~~~~~~l~~~-~~------~~l 693 (1088)
|| ++.+..-+ ...+++++...- +|=+ .+.+.+ ...++....+ +..+...+..+.++.. .. ...
T Consensus 283 pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~--cismqy~~~snh~l~tyRs~pn~p~~r~ 360 (463)
T KOG1645|consen 283 PVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGI--CISMQYHGVSNHLLLTYRSNPNFPQSRF 360 (463)
T ss_pred cceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCCcc--eeeeeecCccceEEEEecCCCCCcccee
Confidence 43 22222111 112233322111 1100 011111 0011110000 0011111111222221 11 112
Q ss_pred EEEEEcCCCCe---EEEEEeCCC--c---cCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCC
Q 001387 694 TIGTIDDIQKL---HIRSIPLGE--H---PRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTF 765 (1088)
Q Consensus 694 ~i~~l~~~~~~---~~~~i~l~~--t---p~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~ 765 (1088)
..++++...+. ..|....|. + -+.....++.+.++|...+ ....+.+.|+.+++++.++.++
T Consensus 361 il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd--------~tn~lil~D~~s~evvQ~l~~~-- 430 (463)
T KOG1645|consen 361 ILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGD--------STNELILQDPHSFEVVQTLALS-- 430 (463)
T ss_pred eeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecC--------CcceeEEeccchhheeeecccC--
Confidence 22233333332 223222221 1 1223445555677776644 2467899999999999888777
Q ss_pred ceEeEEEEEEEcCCCceEEEEEee
Q 001387 766 EYGCSILSCSFSDDSNVYYCVGTA 789 (1088)
Q Consensus 766 E~v~si~~~~~~~~~~~~i~VGT~ 789 (1088)
|.+..++.+... +..|+++-|.
T Consensus 431 epv~Dicp~~~n--~~syLa~LTd 452 (463)
T KOG1645|consen 431 EPVLDICPNDTN--GSSYLALLTD 452 (463)
T ss_pred cceeecceeecC--Ccchhhheec
Confidence 888888876543 5778887774
No 64
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.49 E-value=8.9 Score=41.78 Aligned_cols=241 Identities=16% Similarity=0.174 Sum_probs=117.2
Q ss_pred EEEECCCEEEEEECCCeEEEEEEc-CcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCce
Q 001387 493 VATANASQVLLATGGGHLVYLEIG-DGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLI 571 (1088)
Q Consensus 493 ~a~~~~~~lvv~~~~~~l~~~~~~-~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~ 571 (1088)
+++..++.++++.++| +.+++.+ ..+..++.+. ..|+-+.+.+ + ....++ .. |+.+.+|+++.+...
T Consensus 2 c~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~---~~I~ql~vl~--~---~~~llv--Ls-d~~l~~~~L~~l~~~ 69 (275)
T PF00780_consen 2 CADSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKL---SSITQLSVLP--E---LNLLLV--LS-DGQLYVYDLDSLEPV 69 (275)
T ss_pred CcccCCCEEEEEECCC-EEEEEecCCccceeEeec---ceEEEEEEec--c---cCEEEE--Ec-CCccEEEEchhhccc
Confidence 3455678889998777 4454662 2222222111 1165555432 1 122333 34 799999999876654
Q ss_pred EEe-------------cCCCCcCceeEE-eeeecCceEEEEEeCCCcEEEEEEecCCCcc-ccceeeecCccceeEEEEE
Q 001387 572 TKE-------------HLGGEIIPRSVL-LCAFEGISYLLCALGDGHLLNFLLNMKTGEL-TDRKKVSLGTQPITLRTFS 636 (1088)
Q Consensus 572 ~~~-------------~l~~~~~p~si~-~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l-~~~~~~~lG~~pv~l~~~~ 636 (1088)
... .++...-.+... .....+...|.+..+. .+..|++....... ...+...+-..|..+.-+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk-~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~- 147 (275)
T PF00780_consen 70 STSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK-KILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL- 147 (275)
T ss_pred cccccccccccccccccccccCCeeEEeeccccccceEEEEEECC-EEEEEEEECCcccccceeEEEEcCCCcEEEEEe-
Confidence 321 111100111111 1122355678888877 88889988743344 444555666666655443
Q ss_pred eCCceEEEEecCCceEEEecC-CcEE-EeecccccceeeeccCCCCCCCeEEEEeCCeEEEEE-----EcCCCCeE--EE
Q 001387 637 SKNTTHVFAASDRPTVIYSSN-KKLL-YSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGT-----IDDIQKLH--IR 707 (1088)
Q Consensus 637 ~~~~~~v~~~~~~p~~i~~~~-~~~~-~~~l~~~~i~~~~~f~~~~~~~~l~~~~~~~l~i~~-----l~~~~~~~--~~ 707 (1088)
.+.+++...+-+.++.-+ +... +.+..... ..+..-.....+-.+.-..++.+.+|. .-+..+.+ ..
T Consensus 148 ---~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~~g~fv~~~G~~~r~~ 223 (275)
T PF00780_consen 148 ---GNKICVGTSKGFYLIDLNTGSPSELLDPSDSS-SSFKSRNSSSKPLGIFQLSDNEFLLCYDNIGVFVNKNGEPSRKS 223 (275)
T ss_pred ---CCEEEEEeCCceEEEecCCCCceEEeCccCCc-chhhhcccCCCceEEEEeCCceEEEEecceEEEEcCCCCcCccc
Confidence 234444445555444322 2221 11111111 000000000011111112222222221 11112222 34
Q ss_pred EEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCC
Q 001387 708 SIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDT 764 (1088)
Q Consensus 708 ~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~ 764 (1088)
.|.-...|+.++|... |+++..++ .|++.+..+++.+..++++.
T Consensus 224 ~i~W~~~p~~~~~~~p---yli~~~~~----------~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 224 TIQWSSAPQSVAYSSP---YLIAFSSN----------SIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred EEEcCCchhEEEEECC---EEEEECCC----------EEEEEECcCCcEEEEEECCC
Confidence 7777889999999754 66666543 58888888888877777553
No 65
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.37 E-value=9.5 Score=41.58 Aligned_cols=221 Identities=17% Similarity=0.110 Sum_probs=116.3
Q ss_pred CceEEEEEeCCCcEEEEEEecCCCccccceeeecCccce-eEEEEEeCCceEEEEecCCceEEEecC---CcE-----EE
Q 001387 592 GISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPI-TLRTFSSKNTTHVFAASDRPTVIYSSN---KKL-----LY 662 (1088)
Q Consensus 592 ~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv-~l~~~~~~~~~~v~~~~~~p~~i~~~~---~~~-----~~ 662 (1088)
.+..|++|+.+| |+.|+.....+ . +......++ ++..+ ...+.+++.+++-..++.-+ ... ..
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~---~--~~i~~~~~I~ql~vl--~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSK---P--TRILKLSSITQLSVL--PELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCcc---c--eeEeecceEEEEEEe--cccCEEEEEcCCccEEEEchhhccccccccccc
Confidence 457899999999 88888821111 1 111222222 23222 23456777777555444311 000 00
Q ss_pred -------eecc-cccceeeeccCCCCCC-CeEEEEeCCeEEEEEEcCC-CC--eEEEEEeCCCccCeEEEecCCCEEEEE
Q 001387 663 -------SNVN-LKEVSHMCPFNSAAFP-DSLAIAKEGELTIGTIDDI-QK--LHIRSIPLGEHPRRICHQEQSRTFAIC 730 (1088)
Q Consensus 663 -------~~l~-~~~i~~~~~f~~~~~~-~~l~~~~~~~l~i~~l~~~-~~--~~~~~i~l~~tp~~i~y~~~~~~~~v~ 730 (1088)
..+. .+.+..++.- ..... ..++++.+..+.+.+.... .. -..+.+.+.++|+.+.+. .+.++|+
T Consensus 78 ~~~~~~~~~~~~~~~v~~f~~~-~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 78 PKSRSLPTKLPETKGVSFFAVN-GGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVG 154 (275)
T ss_pred cccccccccccccCCeeEEeec-cccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEE
Confidence 0111 1233333300 11111 2466677889999998874 33 488999999999999998 4577777
Q ss_pred EeecCCCcCcceeEEEEEEeCCCceEEEEEECCC--------CceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceE
Q 001387 731 SLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDT--------FEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGR 802 (1088)
Q Consensus 731 ~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~--------~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gr 802 (1088)
+.+ ...++|..+.....-+.... .+....+....+.+ .+++++-... |-
T Consensus 155 ~~~-----------~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~Ll~~~~~----------g~ 211 (275)
T PF00780_consen 155 TSK-----------GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD--NEFLLCYDNI----------GV 211 (275)
T ss_pred eCC-----------ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC--ceEEEEecce----------EE
Confidence 643 24555555443322222111 12222333333432 4555542211 11
Q ss_pred EEEEEEeCCeEEEEEEEEecCceeEeccccCeEEEEECCEEEEEEee
Q 001387 803 ILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWM 849 (1088)
Q Consensus 803 i~v~~i~~~kl~~~~~~~~~g~v~ai~~~~g~Lv~~~g~~l~v~~~~ 849 (1088)
. .+. +++...-...+.++.+.+++....+|++...+.|.++.+.
T Consensus 212 f--v~~-~G~~~r~~~i~W~~~p~~~~~~~pyli~~~~~~iEV~~~~ 255 (275)
T PF00780_consen 212 F--VNK-NGEPSRKSTIQWSSAPQSVAYSSPYLIAFSSNSIEVRSLE 255 (275)
T ss_pred E--EcC-CCCcCcccEEEcCCchhEEEEECCEEEEECCCEEEEEECc
Confidence 0 011 1211113344667788888888889998888889998864
No 66
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=94.31 E-value=7.8 Score=40.36 Aligned_cols=189 Identities=14% Similarity=0.196 Sum_probs=96.5
Q ss_pred CCEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCC
Q 001387 498 ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLG 577 (1088)
Q Consensus 498 ~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~ 577 (1088)
+.++++...+..+.++...+ ...+...++..++-.++... ++.+.+.+...|.++|++.|.|+++.+ +.
T Consensus 118 g~~~~~~~kdD~it~id~r~--~~~~~~~~~~~e~ne~~w~~-------~nd~Fflt~GlG~v~ILsypsLkpv~s--i~ 186 (313)
T KOG1407|consen 118 GEYIAVGNKDDRITFIDART--YKIVNEEQFKFEVNEISWNN-------SNDLFFLTNGLGCVEILSYPSLKPVQS--IK 186 (313)
T ss_pred CCEEEEecCcccEEEEEecc--cceeehhcccceeeeeeecC-------CCCEEEEecCCceEEEEeccccccccc--cc
Confidence 34444444455566654432 22333445555665555431 455666666579999999999988642 21
Q ss_pred CCcCceeEEeeeec-CceEEEEEeCCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEecCCceEEEec
Q 001387 578 GEIIPRSVLLCAFE-GISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSS 656 (1088)
Q Consensus 578 ~~~~p~si~~~~~~-~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~i~~~ 656 (1088)
. .....++ ..+. ..-|+-+|..|-.+-.+.+++ |-..|...==.-||+-..|..
T Consensus 187 A-H~snCic-I~f~p~GryfA~GsADAlvSLWD~~E----LiC~R~isRldwpVRTlSFS~------------------- 241 (313)
T KOG1407|consen 187 A-HPSNCIC-IEFDPDGRYFATGSADALVSLWDVDE----LICERCISRLDWPVRTLSFSH------------------- 241 (313)
T ss_pred c-CCcceEE-EEECCCCceEeeccccceeeccChhH----hhhheeeccccCceEEEEecc-------------------
Confidence 0 1112222 2332 346788888876555544432 222222211133544333321
Q ss_pred CCcEEEeecccccceeeeccCCCCCCCeEEEEe-CCeEEEEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecC
Q 001387 657 NKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQ 735 (1088)
Q Consensus 657 ~~~~~~~~l~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~ 735 (1088)
++++ |+.++ +--+-|+.+++.. .+-.||-...--.++.||...+++-+|.+..
T Consensus 242 dg~~------------------------lASaSEDh~IDIA~vetGd--~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~ 295 (313)
T KOG1407|consen 242 DGRM------------------------LASASEDHFIDIAEVETGD--RVWEIPCEGPTFTVAWHPKRPLLAYACDDKD 295 (313)
T ss_pred Ccce------------------------eeccCccceEEeEecccCC--eEEEeeccCCceeEEecCCCceeeEEecCCC
Confidence 1121 11111 1112344444332 2345666666668999999999999998752
Q ss_pred CCcCcceeEEEEEE
Q 001387 736 SCAEESEMHFVRLL 749 (1088)
Q Consensus 736 ~~~~~~~~s~l~li 749 (1088)
. +...+.+.++++
T Consensus 296 ~-d~~reag~vKiF 308 (313)
T KOG1407|consen 296 G-DSNREAGTVKIF 308 (313)
T ss_pred C-ccccccceeEEe
Confidence 2 112244666665
No 67
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=94.14 E-value=12 Score=42.01 Aligned_cols=231 Identities=13% Similarity=0.145 Sum_probs=111.1
Q ss_pred cCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCc-EEEEEEecCCCccccceeeecCccceeEEE
Q 001387 556 TDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGH-LLNFLLNMKTGELTDRKKVSLGTQPITLRT 634 (1088)
Q Consensus 556 ~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~-l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~ 634 (1088)
.+..|.+|+..+++.+....++. -|+-.. +..+..+.-+.||. ++++++++.+ .+. .+-+...-+ +..
T Consensus 75 ~~d~V~v~D~~t~~~~~~i~~p~--~p~~~~----~~~~~~~~ls~dgk~l~V~n~~p~~-~V~---VvD~~~~kv-v~e 143 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIADIELPE--GPRFLV----GTYPWMTSLTPDNKTLLFYQFSPSP-AVG---VVDLEGKAF-VRM 143 (352)
T ss_pred CCCEEEEEECccCcEEeEEccCC--Cchhhc----cCccceEEECCCCCEEEEecCCCCC-EEE---EEECCCCcE-EEE
Confidence 57899999999988876655542 333111 12344566666664 3335544332 110 000111110 111
Q ss_pred EEeCCceEEEEecCCceEEEecCCcEEEeeccccc-c-eeeec---------cCCC--CC-CCeEEEEe-CCeEEEEEEc
Q 001387 635 FSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKE-V-SHMCP---------FNSA--AF-PDSLAIAK-EGELTIGTID 699 (1088)
Q Consensus 635 ~~~~~~~~v~~~~~~p~~i~~~~~~~~~~~l~~~~-i-~~~~~---------f~~~--~~-~~~l~~~~-~~~l~i~~l~ 699 (1088)
+...+...++.+++.-.+..+.++++....+..+. . ..-.+ |..+ .- .+..++++ ++.+.+..+.
T Consensus 144 i~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~ 223 (352)
T TIGR02658 144 MDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLS 223 (352)
T ss_pred EeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecC
Confidence 22233445555555554444434333221111000 0 00001 1111 11 23466655 6777777654
Q ss_pred CCCC---eEEEEEeCCC-----ccCe---EEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceE
Q 001387 700 DIQK---LHIRSIPLGE-----HPRR---ICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYG 768 (1088)
Q Consensus 700 ~~~~---~~~~~i~l~~-----tp~~---i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v 768 (1088)
...- -....+..++ .|-. ++++++.+.+.|+...............|.++|..+++.+.++.... .+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~--~~ 301 (352)
T TIGR02658 224 SGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH--EI 301 (352)
T ss_pred CCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC--ce
Confidence 3321 1122222211 1222 99999988888866432100000123589999999999999988754 33
Q ss_pred eEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC
Q 001387 769 CSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG 811 (1088)
Q Consensus 769 ~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~ 811 (1088)
.. +.+..++++.+.+-.. ..|.|.+++...+
T Consensus 302 ~~---iavS~Dgkp~lyvtn~---------~s~~VsViD~~t~ 332 (352)
T TIGR02658 302 DS---INVSQDAKPLLYALST---------GDKTLYIFDAETG 332 (352)
T ss_pred ee---EEECCCCCeEEEEeCC---------CCCcEEEEECcCC
Confidence 33 3456555645554331 3456888876543
No 68
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=94.06 E-value=0.97 Score=51.66 Aligned_cols=138 Identities=15% Similarity=0.149 Sum_probs=78.0
Q ss_pred EEEEEECCCeEEEEEEcCcEEEEEeeccCC-ceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEe----
Q 001387 500 QVLLATGGGHLVYLEIGDGILTEVKHAQLE-YEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKE---- 574 (1088)
Q Consensus 500 ~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~-~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~---- 574 (1088)
..+++ ++.++.-|.++.|++- .+++.+ .++.|+++++. ...+++|+. +|.++.|+-.+-+.+..-
T Consensus 148 ly~~g-sg~evYRlNLEqGrfL--~P~~~~~~~lN~v~in~~------hgLla~Gt~-~g~VEfwDpR~ksrv~~l~~~~ 217 (703)
T KOG2321|consen 148 LYLVG-SGSEVYRLNLEQGRFL--NPFETDSGELNVVSINEE------HGLLACGTE-DGVVEFWDPRDKSRVGTLDAAS 217 (703)
T ss_pred EEEee-cCcceEEEEccccccc--cccccccccceeeeecCc------cceEEeccc-CceEEEecchhhhhheeeeccc
Confidence 33433 4667777777777642 223332 55677787653 568888988 999999987653333221
Q ss_pred c---CCC-C--cCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEecC
Q 001387 575 H---LGG-E--IIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASD 648 (1088)
Q Consensus 575 ~---l~~-~--~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~ 648 (1088)
. .+. + ..|.++.+- ++...+-||+++|.++.|.+.....-+ .+...+..|+....+...++...++..+
T Consensus 218 ~v~s~pg~~~~~svTal~F~--d~gL~~aVGts~G~v~iyDLRa~~pl~---~kdh~~e~pi~~l~~~~~~~q~~v~S~D 292 (703)
T KOG2321|consen 218 SVNSHPGGDAAPSVTALKFR--DDGLHVAVGTSTGSVLIYDLRASKPLL---VKDHGYELPIKKLDWQDTDQQNKVVSMD 292 (703)
T ss_pred ccCCCccccccCcceEEEec--CCceeEEeeccCCcEEEEEcccCCcee---ecccCCccceeeecccccCCCceEEecc
Confidence 1 111 1 123344322 236789999999999999987532111 1123455676554442223344555555
Q ss_pred CceE
Q 001387 649 RPTV 652 (1088)
Q Consensus 649 ~p~~ 652 (1088)
...+
T Consensus 293 k~~~ 296 (703)
T KOG2321|consen 293 KRIL 296 (703)
T ss_pred hHHh
Confidence 5443
No 69
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=93.84 E-value=12 Score=40.90 Aligned_cols=120 Identities=18% Similarity=0.277 Sum_probs=68.0
Q ss_pred cceEEEEEEEeC--CeEEEEEE-----EEecCcee--Eeccc-cCeEEEEEC---CEEEEEEeeeccCcccccccccccc
Q 001387 799 TKGRILVFIVED--GKLQLIAE-----KETKGAVY--SLNAF-NGKLLAAIN---QKIQLYKWMLRDDGTRELQSECGHH 865 (1088)
Q Consensus 799 ~~Gri~v~~i~~--~kl~~~~~-----~~~~g~v~--ai~~~-~g~Lv~~~g---~~l~v~~~~~~~~~~~~L~~~~~~~ 865 (1088)
-.++|.+|+.++ ++++.+-. .++.|..- +|.-- +|+.+.+.+ +.|.+|.++. +.|+.++.......
T Consensus 211 L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~-~~g~L~~~~~~~te 289 (346)
T COG2706 211 LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP-DGGKLELVGITPTE 289 (346)
T ss_pred cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC-CCCEEEEEEEeccC
Confidence 356888998885 56655443 23444332 33322 566666666 4678888753 22333333322111
Q ss_pred cc-eEEEEEEEeCCEEE-EEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEe
Q 001387 866 GH-ILALYVQTRGDFIV-VGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEIL 919 (1088)
Q Consensus 866 ~~-~~~~~l~~~~~~I~-vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l 919 (1088)
+. +--..+..-+++++ ++---+.+.+++-+++.++|.++.+|...-.-+|+.|+
T Consensus 290 g~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 290 GQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 11 11123444566554 45555668888888888999999998665555555553
No 70
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.73 E-value=2.1 Score=45.41 Aligned_cols=134 Identities=12% Similarity=0.188 Sum_probs=85.6
Q ss_pred CeEEEEEeCC--CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeC------CCceEEEEEE-----CCCCceEe
Q 001387 703 KLHIRSIPLG--EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDD------QTFEFISTYP-----LDTFEYGC 769 (1088)
Q Consensus 703 ~~~~~~i~l~--~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~------~t~~~i~~~~-----~~~~E~v~ 769 (1088)
.|.-++.-.+ ....-|.|-|...-+-+++... -+.||+++. ..|.....+. ...++...
T Consensus 101 ~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~a--------DG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~ 172 (361)
T KOG2445|consen 101 RWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASA--------DGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPC 172 (361)
T ss_pred eeEEEEEeecCCcceeEEEecchhcceEEEEecc--------CcEEEEEecCCccccccchhhhhhhhccCCcccccCcc
Confidence 4655554333 3466677776554444444332 157777753 3454433222 33567767
Q ss_pred EEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeC--CeEEEEEEE-EecCceeEeccc--cC--e--EEEEEC
Q 001387 770 SILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVED--GKLQLIAEK-ETKGAVYSLNAF--NG--K--LLAAIN 840 (1088)
Q Consensus 770 si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~--~kl~~~~~~-~~~g~v~ai~~~--~g--~--Lv~~~g 840 (1088)
.+.+|.......++||||. +|+.+..+++++|+..+ +|...+.+. ++..||++|+-- -| + |.+|.+
T Consensus 173 ~CvsWn~sr~~~p~iAvgs-----~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k 247 (361)
T KOG2445|consen 173 FCVSWNPSRMHEPLIAVGS-----DEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK 247 (361)
T ss_pred eEEeeccccccCceEEEEc-----ccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence 7778876666789999998 56778999999999883 366655554 578899999843 23 2 556666
Q ss_pred CEEEEEEee
Q 001387 841 QKIQLYKWM 849 (1088)
Q Consensus 841 ~~l~v~~~~ 849 (1088)
.-|+||.+.
T Consensus 248 Dgv~I~~v~ 256 (361)
T KOG2445|consen 248 DGVRIFKVK 256 (361)
T ss_pred CcEEEEEEe
Confidence 669998864
No 71
>PTZ00420 coronin; Provisional
Probab=93.58 E-value=22 Score=42.95 Aligned_cols=217 Identities=14% Similarity=0.101 Sum_probs=104.8
Q ss_pred CccCeEEEecC-CCEEEEEEeecCCCcCcceeEEEEEEeCCCce-EEE-----EEECCCC-ceEeEEEEEEEcCCCceEE
Q 001387 713 EHPRRICHQEQ-SRTFAICSLKNQSCAEESEMHFVRLLDDQTFE-FIS-----TYPLDTF-EYGCSILSCSFSDDSNVYY 784 (1088)
Q Consensus 713 ~tp~~i~y~~~-~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~-~i~-----~~~~~~~-E~v~si~~~~~~~~~~~~i 784 (1088)
..+..+.++|. .+.++.++.+ +.|++.|..+.. ... ...+..+ ..+.++ .+...+..++
T Consensus 75 ~~V~~lafsP~~~~lLASgS~D----------gtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sV---af~P~g~~iL 141 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSED----------LTIRVWEIPHNDESVKEIKDPQCILKGHKKKISII---DWNPMNYYIM 141 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeCC----------CeEEEEECCCCCccccccccceEEeecCCCcEEEE---EECCCCCeEE
Confidence 45677889986 4454444432 467888764321 111 0112222 223333 3333333334
Q ss_pred EEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cCeEEEEE--CCEEEEEEeeeccCcccccccc
Q 001387 785 CVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAI--NQKIQLYKWMLRDDGTRELQSE 861 (1088)
Q Consensus 785 ~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g~Lv~~~--g~~l~v~~~~~~~~~~~~L~~~ 861 (1088)
+.|. ..|.|.+|++..++.. ......++|++++-- +|.++++. +++|++|+.. . + ..+...
T Consensus 142 aSgS----------~DgtIrIWDl~tg~~~--~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~R--s-g-~~i~tl 205 (568)
T PTZ00420 142 CSSG----------FDSFVNIWDIENEKRA--FQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPR--K-Q-EIASSF 205 (568)
T ss_pred EEEe----------CCCeEEEEECCCCcEE--EEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECC--C-C-cEEEEE
Confidence 4443 2378999999865432 223356788888743 56666544 5688987752 1 2 112111
Q ss_pred cccccce--EEEEE---EEeCCEEEEEecc----ccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCc-eEEEEccCC
Q 001387 862 CGHHGHI--LALYV---QTRGDFIVVGDLM----KSISLLIYKHEEGAIEERARDYNANWMSAVEILDDD-IYLGAENNF 931 (1088)
Q Consensus 862 ~~~~~~~--~~~~l---~~~~~~I~vgD~~----~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~-~~l~~D~~g 931 (1088)
..+.... ..+.+ ...+++|+.+-.- +.+.++..+.....+..+.-|..+-.++..-.-+.+ .++++-.++
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~ 285 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG 285 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence 1121111 11121 1234677764333 246665443223334333334333322222111223 356777899
Q ss_pred cEEEEeeCCCCCCcccccceeEEEEEEcCCccceE
Q 001387 932 NLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRF 966 (1088)
Q Consensus 932 nl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~ 966 (1088)
++.+|++..+ .+....+|+.++....+
T Consensus 286 tIr~~e~~~~--------~~~~l~~~~s~~p~~g~ 312 (568)
T PTZ00420 286 NCRYYQHSLG--------SIRKVNEYKSCSPFRSF 312 (568)
T ss_pred eEEEEEccCC--------cEEeecccccCCCccce
Confidence 9999998642 23344555555544443
No 72
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=93.49 E-value=11 Score=39.43 Aligned_cols=256 Identities=14% Similarity=0.164 Sum_probs=141.9
Q ss_pred CCeEEEEEEcCCCCeEEEEEeC---CCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEe--CCCceEEEEEECCC
Q 001387 690 EGELTIGTIDDIQKLHIRSIPL---GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLD--DQTFEFISTYPLDT 764 (1088)
Q Consensus 690 ~~~l~i~~l~~~~~~~~~~i~l---~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid--~~t~~~i~~~~~~~ 764 (1088)
+..++|-.......|..|.+-= .++.|+++..|..+.++.++.+. .+-+.. ...|+.++.+|=.+
T Consensus 36 Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~----------t~~Iw~k~~~efecv~~lEGHE 105 (312)
T KOG0645|consen 36 DKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA----------TVVIWKKEDGEFECVATLEGHE 105 (312)
T ss_pred CceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc----------eEEEeecCCCceeEEeeeeccc
Confidence 5667777776555677776642 36899999999999888887653 333332 24788888888777
Q ss_pred CceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEe-CCeEEEEEE-----EEecCceeEeccccCeEE-E
Q 001387 765 FEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE-DGKLQLIAE-----KETKGAVYSLNAFNGKLL-A 837 (1088)
Q Consensus 765 ~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~-~~kl~~~~~-----~~~~g~v~ai~~~~g~Lv-~ 837 (1088)
+|. +.+.+.. ...|||.++- --.+.++++. +..++.+.- .++++.+ -.+-.+-|+ +
T Consensus 106 nEV----K~Vaws~-sG~~LATCSR----------DKSVWiWe~deddEfec~aVL~~HtqDVK~V~--WHPt~dlL~S~ 168 (312)
T KOG0645|consen 106 NEV----KCVAWSA-SGNYLATCSR----------DKSVWIWEIDEDDEFECIAVLQEHTQDVKHVI--WHPTEDLLFSC 168 (312)
T ss_pred cce----eEEEEcC-CCCEEEEeeC----------CCeEEEEEecCCCcEEEEeeeccccccccEEE--EcCCcceeEEe
Confidence 775 4444443 4678886652 2368899988 345554432 2233221 111123444 2
Q ss_pred EECCEEEEEEeeeccCcccccccccccccce---EEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeE
Q 001387 838 AINQKIQLYKWMLRDDGTRELQSECGHHGHI---LALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMS 914 (1088)
Q Consensus 838 ~~g~~l~v~~~~~~~~~~~~L~~~~~~~~~~---~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~ 914 (1088)
+..++|.+|+-.+ ++.++++.. .+.+. ..+...-.|++++.++--.-+.+.++... + ...+.+.+.
T Consensus 169 SYDnTIk~~~~~~--dddW~c~~t--l~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~------~-~~~~sr~~Y 237 (312)
T KOG0645|consen 169 SYDNTIKVYRDED--DDDWECVQT--LDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD------L-SGMHSRALY 237 (312)
T ss_pred ccCCeEEEEeecC--CCCeeEEEE--ecCccceEEEEEecCCCceEEEecCCcceEeeeeccC------c-chhcccceE
Confidence 4458999988532 344555332 23332 23333444668777766666666653211 0 123334443
Q ss_pred EEEEeeCceEEEEccCCcEEEEeeCCCCCCccccccee-EEEEEEcCCccceEEeeeeeecCCCCCCCCccEEEEEcccc
Q 001387 915 AVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLE-VVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNG 993 (1088)
Q Consensus 915 ~~~~l~~~~~l~~D~~gnl~~l~~~~~~~~~~~~~~L~-~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~~l~~t~~G 993 (1088)
.+-- ..+.+..+-.++-|.+|+....... ..-.+. .+...| +..||++.-. ......++.|+-||
T Consensus 238 ~v~W-~~~~IaS~ggD~~i~lf~~s~~~d~--p~~~l~~~~~~aH-e~dVNsV~w~----------p~~~~~L~s~~DDG 303 (312)
T KOG0645|consen 238 DVPW-DNGVIASGGGDDAIRLFKESDSPDE--PSWNLLAKKEGAH-EVDVNSVQWN----------PKVSNRLASGGDDG 303 (312)
T ss_pred eeee-cccceEeccCCCEEEEEEecCCCCC--chHHHHHhhhccc-ccccceEEEc----------CCCCCceeecCCCc
Confidence 3322 2455666667888999987632111 111221 122222 3467776421 12346777788888
Q ss_pred cEEE
Q 001387 994 VIGV 997 (1088)
Q Consensus 994 ~i~~ 997 (1088)
.+-.
T Consensus 304 ~v~~ 307 (312)
T KOG0645|consen 304 IVNF 307 (312)
T ss_pred eEEE
Confidence 7754
No 73
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=93.32 E-value=0.68 Score=48.77 Aligned_cols=271 Identities=18% Similarity=0.245 Sum_probs=147.4
Q ss_pred EEEEEeCCC--ccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCC-------CceEeEEEEEE
Q 001387 705 HIRSIPLGE--HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDT-------FEYGCSILSCS 775 (1088)
Q Consensus 705 ~~~~i~l~~--tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~-------~E~v~si~~~~ 775 (1088)
..|+|..|. -|....|+|+.+.++-.+.+ +.|++.|-.+++.-....... +..+.|+.
T Consensus 204 l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvD----------GFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~--- 270 (508)
T KOG0275|consen 204 LARSIKFGQKSHVECARFSPDGQYLVSGSVD----------GFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCIS--- 270 (508)
T ss_pred hhhheecccccchhheeeCCCCceEeecccc----------ceeeeehhccchhhhhhhhhhhcceeecccceEEEe---
Confidence 346666654 46667788888876655433 466776666655433222222 12344443
Q ss_pred EcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEecccc--CeEE-EEECCEEEEEEeeecc
Q 001387 776 FSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFN--GKLL-AAINQKIQLYKWMLRD 852 (1088)
Q Consensus 776 ~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~--g~Lv-~~~g~~l~v~~~~~~~ 852 (1088)
|.+ ..++++-|. ..|.|.+|+|..+..--.+...+...|+|+.--+ ..++ ++..+.++++.+.
T Consensus 271 FSR-DsEMlAsGs----------qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK--- 336 (508)
T KOG0275|consen 271 FSR-DSEMLASGS----------QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK--- 336 (508)
T ss_pred ecc-cHHHhhccC----------cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc---
Confidence 443 356666554 4589999999855443344455666788887553 3455 4556888998863
Q ss_pred Ccccccccccccccc-eEEEE--EEEeCCEEEEEeccccEEEEEEeccC--CeEEEEeccCCCceeEEEEEeeC--ceEE
Q 001387 853 DGTRELQSECGHHGH-ILALY--VQTRGDFIVVGDLMKSISLLIYKHEE--GAIEERARDYNANWMSAVEILDD--DIYL 925 (1088)
Q Consensus 853 ~~~~~L~~~~~~~~~-~~~~~--l~~~~~~I~vgD~~~Sv~~~~~~~~~--~~l~~~~~D~~~~~v~~~~~l~~--~~~l 925 (1088)
.| +-|.. ++++ +++.. .+..|+.|+-+..--++.++.-+..+ ..+...+.|.. |.++..+.. +.++
T Consensus 337 SG-K~LKE---frGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~---vnsv~~~PKnpeh~i 409 (508)
T KOG0275|consen 337 SG-KCLKE---FRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYP---VNSVILLPKNPEHFI 409 (508)
T ss_pred cc-hhHHH---hcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCccc---ceeEEEcCCCCceEE
Confidence 22 22211 2222 12222 23467888887777777765433221 23444454443 444555544 3589
Q ss_pred EEccCCcEEEEeeCCCCCCcccccceeEEEEEEcCCccceEEeeeeeecCCCCCCCCccEEEEEcccccEEEEEecChhH
Q 001387 926 GAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQ 1005 (1088)
Q Consensus 926 ~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~~l~~t~~G~i~~l~~l~~~~ 1005 (1088)
++.+...++++....+.-.+. ..+.=.-|+.|++... ..+.=+.+.+.||-+|+|.-++-.
T Consensus 410 VCNrsntv~imn~qGQvVrsf------sSGkREgGdFi~~~lS------------pkGewiYcigED~vlYCF~~~sG~- 470 (508)
T KOG0275|consen 410 VCNRSNTVYIMNMQGQVVRSF------SSGKREGGDFINAILS------------PKGEWIYCIGEDGVLYCFSVLSGK- 470 (508)
T ss_pred EEcCCCeEEEEeccceEEeee------ccCCccCCceEEEEec------------CCCcEEEEEccCcEEEEEEeecCc-
Confidence 999999999988754321110 1111223555655421 123345555777777777776532
Q ss_pred HHHHHHHHHHHHhccCCCCCCCccccccc
Q 001387 1006 YLFLEKLQTNLRKVIKGVGGLNHEQWRSF 1034 (1088)
Q Consensus 1006 ~~~L~~lq~~l~~~~~~~~gl~~~~~R~~ 1034 (1088)
||+.|.-..+.+-|+.|--.++.
T Consensus 471 ------LE~tl~VhEkdvIGl~HHPHqNl 493 (508)
T KOG0275|consen 471 ------LERTLPVHEKDVIGLTHHPHQNL 493 (508)
T ss_pred ------eeeeeecccccccccccCcccch
Confidence 22233333334556666555543
No 74
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=93.20 E-value=21 Score=41.74 Aligned_cols=100 Identities=17% Similarity=0.230 Sum_probs=70.9
Q ss_pred CeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCce
Q 001387 703 KLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 782 (1088)
Q Consensus 703 ~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~ 782 (1088)
+..+.+||++..+...+.+|....++++|.+ ++|.++|.....+... ..+.+-....|.- ...
T Consensus 250 rvsvtsipL~s~v~~ca~sp~E~kLvlGC~D----------gSiiLyD~~~~~t~~~----ka~~~P~~iaWHp---~ga 312 (545)
T PF11768_consen 250 RVSVTSIPLPSQVICCARSPSEDKLVLGCED----------GSIILYDTTRGVTLLA----KAEFIPTLIAWHP---DGA 312 (545)
T ss_pred EEEEEEEecCCcceEEecCcccceEEEEecC----------CeEEEEEcCCCeeeee----eecccceEEEEcC---CCc
Confidence 4578899999999999999999999999976 6899999865543211 2222223445632 367
Q ss_pred EEEEEeeeeCCCCCCCcceEEEEEEEeC--CeEEEEEEEEecCceeEec
Q 001387 783 YYCVGTAYVLPEENEPTKGRILVFIVED--GKLQLIAEKETKGAVYSLN 829 (1088)
Q Consensus 783 ~i~VGT~~~~~~e~~~~~Gri~v~~i~~--~kl~~~~~~~~~g~v~ai~ 829 (1088)
+++||. .+|.+.+|++.= -+++++.+...+.++..+.
T Consensus 313 i~~V~s----------~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls 351 (545)
T PF11768_consen 313 IFVVGS----------EQGELQCFDMALSPIKMQLLSEDATPKSTLQLS 351 (545)
T ss_pred EEEEEc----------CCceEEEEEeecCccceeeccccCCCccEEeee
Confidence 899996 679999999873 3566677665666665544
No 75
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=93.12 E-value=18 Score=40.54 Aligned_cols=143 Identities=17% Similarity=0.191 Sum_probs=85.9
Q ss_pred CCCeEEEEe-CCeEEEEEEcCCCCeEEEEEe-CCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEE
Q 001387 681 FPDSLAIAK-EGELTIGTIDDIQKLHIRSIP-LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIS 758 (1088)
Q Consensus 681 ~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~-l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~ 758 (1088)
..+.|+-++ ++..-|..+.....+..-+-. -+-..+..++||+...|+..+.+ +.++++|-++...+.
T Consensus 314 tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d----------~~vkiwdlks~~~~a 383 (506)
T KOG0289|consen 314 TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPD----------GVVKIWDLKSQTNVA 383 (506)
T ss_pred CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCC----------ceEEEEEcCCccccc
Confidence 345666666 444555555554444333322 12245678999999888877643 689999988776555
Q ss_pred EEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCe-EEEEEEEEecCceeEeccc-cCeEE
Q 001387 759 TYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGK-LQLIAEKETKGAVYSLNAF-NGKLL 836 (1088)
Q Consensus 759 ~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~k-l~~~~~~~~~g~v~ai~~~-~g~Lv 836 (1088)
.|+.++.. +..+.|.. +.-|+|+++ ..|.+.+|++.+.+ ++-+...+ +.+|-+++-- .|.++
T Consensus 384 --~Fpght~~--vk~i~FsE-NGY~Lat~a----------dd~~V~lwDLRKl~n~kt~~l~~-~~~v~s~~fD~SGt~L 447 (506)
T KOG0289|consen 384 --KFPGHTGP--VKAISFSE-NGYWLATAA----------DDGSVKLWDLRKLKNFKTIQLDE-KKEVNSLSFDQSGTYL 447 (506)
T ss_pred --cCCCCCCc--eeEEEecc-CceEEEEEe----------cCCeEEEEEehhhcccceeeccc-cccceeEEEcCCCCeE
Confidence 45555543 45667764 456777776 23568999886433 22222112 2255555522 35555
Q ss_pred EEECCEEEEEEee
Q 001387 837 AAINQKIQLYKWM 849 (1088)
Q Consensus 837 ~~~g~~l~v~~~~ 849 (1088)
++.|+.|++|.+.
T Consensus 448 ~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 448 GIAGSDLQVYICK 460 (506)
T ss_pred EeecceeEEEEEe
Confidence 5559999999874
No 76
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.98 E-value=23 Score=41.52 Aligned_cols=137 Identities=13% Similarity=0.091 Sum_probs=80.0
Q ss_pred CcEEEEecCCcceeeeeeCCCCCcEEEEEECCC--EEEEEECCCeEEEEEEcCcEEEEEeecc-CCceeEEEEeCCCCCC
Q 001387 467 GSVRLVSSTSRELRNEWKSPPGYSVNVATANAS--QVLLATGGGHLVYLEIGDGILTEVKHAQ-LEYEISCLDINPIGEN 543 (1088)
Q Consensus 467 ~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~~~--~lvv~~~~~~l~~~~~~~~~l~~~~~~~-l~~~is~l~~~~~~~~ 543 (1088)
-.||+++.++..++..+..-.+ =|.+-++.|. +++-+.++-.+-+..-++ .......++ -+.-|.+++++|-.
T Consensus 77 ~~IrVfnynt~ekV~~FeAH~D-yIR~iavHPt~P~vLtsSDDm~iKlW~we~-~wa~~qtfeGH~HyVMqv~fnPkD-- 152 (794)
T KOG0276|consen 77 MQIRVFNYNTGEKVKTFEAHSD-YIRSIAVHPTLPYVLTSSDDMTIKLWDWEN-EWACEQTFEGHEHYVMQVAFNPKD-- 152 (794)
T ss_pred ceEEEEecccceeeEEeecccc-ceeeeeecCCCCeEEecCCccEEEEeeccC-ceeeeeEEcCcceEEEEEEecCCC--
Confidence 4678899888888888765443 4777777754 333333333343333332 222221122 24558899998722
Q ss_pred CCCccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEec
Q 001387 544 PSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNM 612 (1088)
Q Consensus 544 ~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~ 612 (1088)
.+..+-++- |+++.+|++..-.+.++-. ..+.-...+.+...+++|||+-|..|-.+-++....
T Consensus 153 ---~ntFaS~sL-DrTVKVWslgs~~~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt 216 (794)
T KOG0276|consen 153 ---PNTFASASL-DRTVKVWSLGSPHPNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT 216 (794)
T ss_pred ---ccceeeeec-cccEEEEEcCCCCCceeee-ccccCcceEEeccCCCcceEEecCCCceEEEeecch
Confidence 344444444 9999999996533333211 112234556555566789999998887777666543
No 77
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=92.73 E-value=18 Score=44.31 Aligned_cols=193 Identities=14% Similarity=0.167 Sum_probs=103.2
Q ss_pred cCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCC
Q 001387 715 PRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPE 794 (1088)
Q Consensus 715 p~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~ 794 (1088)
-..|+|.|..+ |++.|..+ ..++.++..+-+.....-...+|.+.|+.. ...++++||
T Consensus 16 ~t~i~~d~~ge-fi~tcgsd---------g~ir~~~~~sd~e~P~ti~~~g~~v~~ia~------~s~~f~~~s------ 73 (933)
T KOG1274|consen 16 LTLICYDPDGE-FICTCGSD---------GDIRKWKTNSDEEEPETIDISGELVSSIAC------YSNHFLTGS------ 73 (933)
T ss_pred eEEEEEcCCCC-EEEEecCC---------CceEEeecCCcccCCchhhccCceeEEEee------cccceEEee------
Confidence 35789998888 55555443 234444332221111111115677777654 245888888
Q ss_pred CCCCcceEEEEEEEeCCeEE-EEEEEEecCceeEeccccCeEEEEECCE--EEEEEeeeccCcc-cccccccccccceEE
Q 001387 795 ENEPTKGRILVFIVEDGKLQ-LIAEKETKGAVYSLNAFNGKLLAAINQK--IQLYKWMLRDDGT-RELQSECGHHGHILA 870 (1088)
Q Consensus 795 e~~~~~Gri~v~~i~~~kl~-~~~~~~~~g~v~ai~~~~g~Lv~~~g~~--l~v~~~~~~~~~~-~~L~~~~~~~~~~~~ 870 (1088)
.++-+.+|.+....-. ++..+.++--+.++.. +|..+++.+.. |.+.+. .|.+. +.+. .++.++..
T Consensus 74 ----~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~--~D~s~~~~lr---gh~apVl~ 143 (933)
T KOG1274|consen 74 ----EQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNL--DDSSQEKVLR---GHDAPVLQ 143 (933)
T ss_pred ----ccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEec--cccchheeec---ccCCceee
Confidence 3467777877654333 4555555544444432 34455555543 444443 22222 2232 24566677
Q ss_pred EEEEEeCCEEEEEeccccEEEEEEecc--CCeEEEEeccCCC---ceeEEEEEeeC-ceEEEEccCCcEEEEeeC
Q 001387 871 LYVQTRGDFIVVGDLMKSISLLIYKHE--EGAIEERARDYNA---NWMSAVEILDD-DIYLGAENNFNLFTVRKN 939 (1088)
Q Consensus 871 ~~l~~~~~~I~vgD~~~Sv~~~~~~~~--~~~l~~~~~D~~~---~~v~~~~~l~~-~~~l~~D~~gnl~~l~~~ 939 (1088)
+++...++++.+.+.--.|.++.++.. ...|.-+.+|... +.++-...=.+ +.+++.-.++.+.+|+..
T Consensus 144 l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~ 218 (933)
T KOG1274|consen 144 LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRK 218 (933)
T ss_pred eeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccC
Confidence 777888999999999999988766542 2344455554332 22222222222 345555556666666654
No 78
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=92.73 E-value=18 Score=41.36 Aligned_cols=202 Identities=16% Similarity=0.203 Sum_probs=109.3
Q ss_pred ccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecC
Q 001387 547 SQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLG 626 (1088)
Q Consensus 547 ~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG 626 (1088)
.++++|....+|++.+++....+.+..-..... .+.++.+. .+..++++..+||.+..+ |..+++ -.+++..|
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~-~h~~~~~s--~Dgr~~yv~~rdg~vsvi--D~~~~~--~v~~i~~G 77 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGA-PHAGLKFS--PDGRYLYVANRDGTVSVI--DLATGK--VVATIKVG 77 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STT-EEEEEE-T--T-SSEEEEEETTSEEEEE--ETTSSS--EEEEEE-S
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCC-ceeEEEec--CCCCEEEEEcCCCeEEEE--ECCccc--EEEEEecC
Confidence 567777777689999999888777654333221 22233322 234678888899977654 443332 34567788
Q ss_pred ccceeEEEEEeCCceEEEEecCCc-eEEEecCCc---EEEeecccccc----eeeeccCCCCCCCeEEEEe--CCeEEEE
Q 001387 627 TQPITLRTFSSKNTTHVFAASDRP-TVIYSSNKK---LLYSNVNLKEV----SHMCPFNSAAFPDSLAIAK--EGELTIG 696 (1088)
Q Consensus 627 ~~pv~l~~~~~~~~~~v~~~~~~p-~~i~~~~~~---~~~~~l~~~~i----~~~~~f~~~~~~~~l~~~~--~~~l~i~ 696 (1088)
..|..+. + ..++..+++.+..| .+...+... +...|....+. ..++.+-.......+++.- .+++.+.
T Consensus 78 ~~~~~i~-~-s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vV 155 (369)
T PF02239_consen 78 GNPRGIA-V-SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVV 155 (369)
T ss_dssp SEEEEEE-E---TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEE
T ss_pred CCcceEE-E-cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEE
Confidence 8886543 2 23445677665333 333333222 22222221100 1112221112223455543 4566555
Q ss_pred EEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCc
Q 001387 697 TIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFE 766 (1088)
Q Consensus 697 ~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E 766 (1088)
.......+..+.++.+..|+-..+.|..+.|+++.... ..+-++|.++.+.+...+.....
T Consensus 156 dy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~s---------n~i~viD~~~~k~v~~i~~g~~p 216 (369)
T PF02239_consen 156 DYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGS---------NKIAVIDTKTGKLVALIDTGKKP 216 (369)
T ss_dssp ETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGG---------TEEEEEETTTTEEEEEEE-SSSB
T ss_pred EeccccccceeeecccccccccccCcccceeeeccccc---------ceeEEEeeccceEEEEeeccccc
Confidence 55555678889999999999999999999888875432 26778888887776655544333
No 79
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=92.11 E-value=5.3 Score=42.39 Aligned_cols=214 Identities=14% Similarity=0.193 Sum_probs=108.5
Q ss_pred CCCeEEEEEEcCcEEEE-EeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCcee
Q 001387 506 GGGHLVYLEIGDGILTE-VKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRS 584 (1088)
Q Consensus 506 ~~~~l~~~~~~~~~l~~-~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~s 584 (1088)
.++.+-+|.+..-.... .+-++-...+-||++.| .+++++||+. -..+++|++...+...... +.+..-.+
T Consensus 192 rD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP------sGefllvgTd-Hp~~rlYdv~T~Qcfvsan-Pd~qht~a 263 (430)
T KOG0640|consen 192 RDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP------SGEFLLVGTD-HPTLRLYDVNTYQCFVSAN-PDDQHTGA 263 (430)
T ss_pred CCCeEEEEecccHHHHHHHHHhhccceeeeEeecC------CCceEEEecC-CCceeEEeccceeEeeecC-cccccccc
Confidence 36677777764311000 00112234577898876 3689999988 8899999998755432211 22211122
Q ss_pred EEeeeecCceEEEE-EeCCCcEEEEEEecCCCc-cccceeeecCccceeEEEEEeCCceEEEEecCCceEEEec--CCcE
Q 001387 585 VLLCAFEGISYLLC-ALGDGHLLNFLLNMKTGE-LTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSS--NKKL 660 (1088)
Q Consensus 585 i~~~~~~~~~~L~v-gl~~G~l~~y~~~~~~~~-l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~i~~~--~~~~ 660 (1088)
+.-+.....-.|++ |..||.+-.+. ..++. ++.. ..--|...|-=-.|. .++..++-.|.-..+-.+. .+|.
T Consensus 264 i~~V~Ys~t~~lYvTaSkDG~IklwD--GVS~rCv~t~-~~AH~gsevcSa~Ft-kn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASKDGAIKLWD--GVSNRCVRTI-GNAHGGSEVCSAVFT-KNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred eeEEEecCCccEEEEeccCCcEEeec--cccHHHHHHH-HhhcCCceeeeEEEc-cCCeEEeecCCcceeeeeeecCCce
Confidence 32222223334444 88999887654 21111 0000 011233332111121 2233444444333322221 2332
Q ss_pred --EEeecc---cccceeeeccCCCCCCCeEEEEeCCeEEEEEEcCCCCeEEEEEeCC--CccCeEEEecCCCEEEEEEee
Q 001387 661 --LYSNVN---LKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLG--EHPRRICHQEQSRTFAICSLK 733 (1088)
Q Consensus 661 --~~~~l~---~~~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~~~~~~i~l~--~tp~~i~y~~~~~~~~v~~~~ 733 (1088)
.|+.-. -+....-+.|+. ..+.+++.++..-.+|.-+..+.--.+..++| ..||-|.++|....|..+..+
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNh--tEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD 417 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNH--TEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDD 417 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcC--ccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeeccc
Confidence 232211 012223334442 24577888888888888776655455666776 468889999988887766543
No 80
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.05 E-value=28 Score=40.21 Aligned_cols=125 Identities=22% Similarity=0.363 Sum_probs=77.4
Q ss_pred ceeeeeeCCCCCcEEEEEE---C-CCEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCC--CCCCCccEEE
Q 001387 478 ELRNEWKSPPGYSVNVATA---N-ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIG--ENPSYSQIAA 551 (1088)
Q Consensus 478 ~~~~~~~~~~~~~I~~a~~---~-~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~--~~~~~~~~~~ 551 (1088)
....+|...-|+.|..-.+ . ...-++++....+..+. ++|.+.-.. .|+...+|+..-.++ ........++
T Consensus 228 ~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~-~~G~l~~~k--rLd~~p~~~~~Y~~~~~~~~~~~~~ll 304 (418)
T PF14727_consen 228 KLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGERSLFCLK-DNGSLRFQK--RLDYNPSCFCPYRVPWYNEPSTRLNLL 304 (418)
T ss_pred cccceeEEECCceeEEEEEEEcCCCCceEEEEecceEEEEc-CCCeEEEEE--ecCCceeeEEEEEeecccCCCCceEEE
Confidence 3567898887876655442 1 22233334345555543 347665554 456777777532221 1111233588
Q ss_pred EEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeC-CCcEEEEEE
Q 001387 552 VGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALG-DGHLLNFLL 610 (1088)
Q Consensus 552 vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~-~G~l~~y~~ 610 (1088)
|++. ++.+.||. +.+++|...++ ..|-++.+..+.+..-+++.+. +|.|-+.-+
T Consensus 305 V~t~-t~~LlVy~--d~~L~WsA~l~--~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YL 359 (418)
T PF14727_consen 305 VGTH-TGTLLVYE--DTTLVWSAQLP--HVPVALSVANFNGLKGLIVSLSDEGQLSVSYL 359 (418)
T ss_pred EEec-CCeEEEEe--CCeEEEecCCC--CCCEEEEecccCCCCceEEEEcCCCcEEEEEe
Confidence 8888 99999998 66777777775 5788888887776666777665 888876554
No 81
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=91.84 E-value=3.9 Score=41.96 Aligned_cols=145 Identities=18% Similarity=0.298 Sum_probs=90.8
Q ss_pred CceEEEEEeeeeCCCCCCCcceEEEEEEEe---------CCeEEEEEEEEecCceeEeccccCeEEEEECCEEEEEEeee
Q 001387 780 SNVYYCVGTAYVLPEENEPTKGRILVFIVE---------DGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWML 850 (1088)
Q Consensus 780 ~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~---------~~kl~~~~~~~~~g~v~ai~~~~g~Lv~~~g~~l~v~~~~~ 850 (1088)
.+.|+++|.. -|.|-+++++ .+|++++.+...+||+|.+...+..|+.|-...++=+.|.+
T Consensus 21 ~~~~l~agn~----------~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gdG~V~gw~W~E 90 (325)
T KOG0649|consen 21 SKQYLFAGNL----------FGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGDGLVYGWEWNE 90 (325)
T ss_pred cceEEEEecC----------CCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccCceEEEeeehh
Confidence 3688998864 3788899887 46899999999999999999999999888878888777753
Q ss_pred cc--Ccccccccc-ccccc-----c-eEEEEEEEeCC-EEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEee
Q 001387 851 RD--DGTRELQSE-CGHHG-----H-ILALYVQTRGD-FIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILD 920 (1088)
Q Consensus 851 ~~--~~~~~L~~~-~~~~~-----~-~~~~~l~~~~~-~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~ 920 (1088)
.. ++.|+|-.. .-++. + +.++.+.-..| .+++| -+++ ++.++-|.+++...-|--. -.+- +....
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag--GD~~-~y~~dlE~G~i~r~~rGHt-DYvH-~vv~R 165 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG--GDGV-IYQVDLEDGRIQREYRGHT-DYVH-SVVGR 165 (325)
T ss_pred hhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec--CCeE-EEEEEecCCEEEEEEcCCc-ceee-eeeec
Confidence 21 233333221 11111 0 13445553444 55555 4454 5678888888776654311 1121 11221
Q ss_pred --CceEEEEccCCcEEEEeeC
Q 001387 921 --DDIYLGAENNFNLFTVRKN 939 (1088)
Q Consensus 921 --~~~~l~~D~~gnl~~l~~~ 939 (1088)
...++.+-.+|.+.+...-
T Consensus 166 ~~~~qilsG~EDGtvRvWd~k 186 (325)
T KOG0649|consen 166 NANGQILSGAEDGTVRVWDTK 186 (325)
T ss_pred ccCcceeecCCCccEEEEecc
Confidence 1347777788888887653
No 82
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=91.75 E-value=18 Score=37.50 Aligned_cols=95 Identities=14% Similarity=0.135 Sum_probs=61.3
Q ss_pred CCeEEEEEEcCcEEEEEeeccCC-ceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeE
Q 001387 507 GGHLVYLEIGDGILTEVKHAQLE-YEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSV 585 (1088)
Q Consensus 507 ~~~l~~~~~~~~~l~~~~~~~l~-~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si 585 (1088)
...+.++++..++-..+..++.. +.|+++.|.. .+.++.-|.. ||+++||.+..+... -.+....+..++
T Consensus 60 ~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~------dgrWMyTgse-Dgt~kIWdlR~~~~q--R~~~~~spVn~v 130 (311)
T KOG0315|consen 60 NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC------DGRWMYTGSE-DGTVKIWDLRSLSCQ--RNYQHNSPVNTV 130 (311)
T ss_pred CCeeEEEEccCCCCCceeEEeccCCceEEEEEee------cCeEEEecCC-CceEEEEeccCcccc--hhccCCCCcceE
Confidence 55677777765433344444443 6688887742 3567777766 999999999764321 112222345566
Q ss_pred EeeeecCceEEEEEeCCCcEEEEEEec
Q 001387 586 LLCAFEGISYLLCALGDGHLLNFLLNM 612 (1088)
Q Consensus 586 ~~~~~~~~~~L~vgl~~G~l~~y~~~~ 612 (1088)
++.. .+..|++|..+|.+-++.+..
T Consensus 131 vlhp--nQteLis~dqsg~irvWDl~~ 155 (311)
T KOG0315|consen 131 VLHP--NQTELISGDQSGNIRVWDLGE 155 (311)
T ss_pred EecC--CcceEEeecCCCcEEEEEccC
Confidence 5553 467899999999999988754
No 83
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=91.75 E-value=26 Score=39.27 Aligned_cols=211 Identities=15% Similarity=0.137 Sum_probs=107.0
Q ss_pred CCeEEEEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEe
Q 001387 690 EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGC 769 (1088)
Q Consensus 690 ~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~ 769 (1088)
+..+++-+.+... -+.-..+..+.++.+.-||....++-+..+ ++..|-|-.+...+..+.-+..+.-
T Consensus 282 d~~i~vws~~~~s-~~~~~~~h~~~V~~ls~h~tgeYllsAs~d----------~~w~Fsd~~~g~~lt~vs~~~s~v~- 349 (506)
T KOG0289|consen 282 DEIIRVWSVPLSS-EPTSSRPHEEPVTGLSLHPTGEYLLSASND----------GTWAFSDISSGSQLTVVSDETSDVE- 349 (506)
T ss_pred cceEEeecccccc-CccccccccccceeeeeccCCcEEEEecCC----------ceEEEEEccCCcEEEEEeeccccce-
Confidence 3444444444332 222233444445555666666555444322 4556666666666555444333221
Q ss_pred EEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEE-ecCceeEeccc-cCe-EEEEECCE-EEE
Q 001387 770 SILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKE-TKGAVYSLNAF-NGK-LLAAINQK-IQL 845 (1088)
Q Consensus 770 si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~-~~g~v~ai~~~-~g~-Lv~~~g~~-l~v 845 (1088)
+.+..|.. .=++.||+. ..|-+.+|+++... -+.++. +.|||.+|.-- ||| |+.+.... |.+
T Consensus 350 -~ts~~fHp---DgLifgtgt--------~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~l 415 (506)
T KOG0289|consen 350 -YTSAAFHP---DGLIFGTGT--------PDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKL 415 (506)
T ss_pred -eEEeeEcC---CceEEeccC--------CCceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecCCeEEE
Confidence 22223332 224455542 55899999998544 333333 68899999854 676 56677765 777
Q ss_pred EEeeeccCccccccccccc--ccc--eEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEe--ccCCCceeEEEEEe
Q 001387 846 YKWMLRDDGTRELQSECGH--HGH--ILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERA--RDYNANWMSAVEIL 919 (1088)
Q Consensus 846 ~~~~~~~~~~~~L~~~~~~--~~~--~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~--~D~~~~~v~~~~~l 919 (1088)
|++ + |+...-.+ +.. ...++++-.|.++.++ -..+.++.|+....+-.++. .|.. -..+.+.|=
T Consensus 416 wDL--R-----Kl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~--g~~l~Vy~~~k~~k~W~~~~~~~~~s-g~st~v~Fg 485 (506)
T KOG0289|consen 416 WDL--R-----KLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA--GSDLQVYICKKKTKSWTEIKELADHS-GLSTGVRFG 485 (506)
T ss_pred EEe--h-----hhcccceeeccccccceeEEEcCCCCeEEee--cceeEEEEEecccccceeeehhhhcc-cccceeeec
Confidence 664 2 22211111 111 2344555567777777 67788888875433322222 1211 133445554
Q ss_pred eCceEEE-EccCCcEEEE
Q 001387 920 DDDIYLG-AENNFNLFTV 936 (1088)
Q Consensus 920 ~~~~~l~-~D~~gnl~~l 936 (1088)
+...+++ +-.+.++.++
T Consensus 486 ~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 486 EHAQYLASTSMDAILRLY 503 (506)
T ss_pred ccceEEeeccchhheEEe
Confidence 4444443 3334444444
No 84
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=91.72 E-value=5.4 Score=46.15 Aligned_cols=257 Identities=18% Similarity=0.120 Sum_probs=121.9
Q ss_pred ceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEE
Q 001387 530 YEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFL 609 (1088)
Q Consensus 530 ~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~ 609 (1088)
..+.||++.+ ...+++-|.. +|+++||.+-+...+....+. ...++++..+..+...|.+..++- ++.
T Consensus 401 g~Vr~iSvdp------~G~wlasGsd-DGtvriWEi~TgRcvr~~~~d--~~I~~vaw~P~~~~~vLAvA~~~~-~~i-- 468 (733)
T KOG0650|consen 401 GLVRSISVDP------SGEWLASGSD-DGTVRIWEIATGRCVRTVQFD--SEIRSVAWNPLSDLCVLAVAVGEC-VLI-- 468 (733)
T ss_pred CeEEEEEecC------CcceeeecCC-CCcEEEEEeecceEEEEEeec--ceeEEEEecCCCCceeEEEEecCc-eEE--
Confidence 3456777754 3578888877 999999999877666554444 355677666655666666666554 222
Q ss_pred EecCCC-ccccce-eeecCccceeEEEEEeCCceEEEEecCCceEEEecC----CcEEEeecccccceeeeccCCCCCCC
Q 001387 610 LNMKTG-ELTDRK-KVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSN----KKLLYSNVNLKEVSHMCPFNSAAFPD 683 (1088)
Q Consensus 610 ~~~~~~-~l~~~~-~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~i~~~~----~~~~~~~l~~~~i~~~~~f~~~~~~~ 683 (1088)
+++.-| .+.... ...++..|.. . ...+..+ .|.-.+. ..+...=-+.+.+..++ -..-++
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~--~----~p~~~~~-----~W~~~~~~e~~~~v~~~I~~~k~i~~vt---WHrkGD 534 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNE--S----EPDAAVV-----TWSRASLDELEKGVCIVIKHPKSIRQVT---WHRKGD 534 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCc--c----CCcccce-----eechhhhhhhccceEEEEecCCccceee---eecCCc
Confidence 222211 011000 0112222100 0 0000000 0110000 00100000001111111 001123
Q ss_pred eEEEE--e--CCeEEEEEEcCCCC-eEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEE
Q 001387 684 SLAIA--K--EGELTIGTIDDIQK-LHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIS 758 (1088)
Q Consensus 684 ~l~~~--~--~~~l~i~~l~~~~~-~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~ 758 (1088)
.|..+ + +.++.|-++..... .+.++ .+++|.++.|||....++|++- -.|+++|-...+.+.
T Consensus 535 YlatV~~~~~~~~VliHQLSK~~sQ~PF~k--skG~vq~v~FHPs~p~lfVaTq-----------~~vRiYdL~kqelvK 601 (733)
T KOG0650|consen 535 YLATVMPDSGNKSVLIHQLSKRKSQSPFRK--SKGLVQRVKFHPSKPYLFVATQ-----------RSVRIYDLSKQELVK 601 (733)
T ss_pred eEEEeccCCCcceEEEEecccccccCchhh--cCCceeEEEecCCCceEEEEec-----------cceEEEehhHHHHHH
Confidence 33322 2 35677777765421 22222 2578999999999999999874 358888864433221
Q ss_pred EEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccccCeEEEE
Q 001387 759 TYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAA 838 (1088)
Q Consensus 759 ~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~g~Lv~~ 838 (1088)
++.++-...|- +.+... ..-+++|+ .-+++.+|+++-..=-+..-.-++.+|++++....+=++|
T Consensus 602 --kL~tg~kwiS~--msihp~-GDnli~gs----------~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfa 666 (733)
T KOG0650|consen 602 --KLLTGSKWISS--MSIHPN-GDNLILGS----------YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFA 666 (733)
T ss_pred --HHhcCCeeeee--eeecCC-CCeEEEec----------CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceee
Confidence 23333332222 222322 34466676 3468999988722100001112455677777666554444
Q ss_pred EC
Q 001387 839 IN 840 (1088)
Q Consensus 839 ~g 840 (1088)
.|
T Consensus 667 s~ 668 (733)
T KOG0650|consen 667 SG 668 (733)
T ss_pred ee
Confidence 44
No 85
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=91.67 E-value=18 Score=40.75 Aligned_cols=133 Identities=20% Similarity=0.224 Sum_probs=84.2
Q ss_pred eCCeEEEEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCC---
Q 001387 689 KEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTF--- 765 (1088)
Q Consensus 689 ~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~--- 765 (1088)
.+.++++-.++...++..+ +-...+..++|..+.. |+..+ ..+.|.|.+-..++.+.++....+
T Consensus 306 rDrT~rlwKi~eesqlifr--g~~~sidcv~~In~~H-fvsGS----------dnG~IaLWs~~KKkplf~~~~AHgv~~ 372 (479)
T KOG0299|consen 306 RDRTVRLWKIPEESQLIFR--GGEGSIDCVAFINDEH-FVSGS----------DNGSIALWSLLKKKPLFTSRLAHGVIP 372 (479)
T ss_pred ccceeEEEeccccceeeee--CCCCCeeeEEEecccc-eeecc----------CCceEEEeeecccCceeEeeccccccC
Confidence 4666777777554333222 2234555666554322 22222 237889998888888876554322
Q ss_pred c--------eEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC--eEEEEEEEEecCceeEeccc-cCe
Q 001387 766 E--------YGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG--KLQLIAEKETKGAVYSLNAF-NGK 834 (1088)
Q Consensus 766 E--------~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~--kl~~~~~~~~~g~v~ai~~~-~g~ 834 (1088)
+ -++++..+. +..++|-|. ..|.|.+|.+.++ ++.++++..+.|-|.+|+-. +|+
T Consensus 373 ~~~~~~~~~Witsla~i~----~sdL~asGS----------~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk 438 (479)
T KOG0299|consen 373 ELDPVNGNFWITSLAVIP----GSDLLASGS----------WSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGK 438 (479)
T ss_pred CccccccccceeeeEecc----cCceEEecC----------CCCceEEEEecCCccccceeeecccccEEEEEEEccCCC
Confidence 1 344444331 234555443 5789999999965 89999999999999999944 555
Q ss_pred -EEEEECCEEEEEEe
Q 001387 835 -LLAAINQKIQLYKW 848 (1088)
Q Consensus 835 -Lv~~~g~~l~v~~~ 848 (1088)
|++++|+.=++=+|
T Consensus 439 ~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 439 RIVAGIGKEHRLGRW 453 (479)
T ss_pred EEEEeccccccccee
Confidence 99999987665555
No 86
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=91.65 E-value=13 Score=41.85 Aligned_cols=204 Identities=15% Similarity=0.148 Sum_probs=112.3
Q ss_pred EEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEE
Q 001387 707 RSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCV 786 (1088)
Q Consensus 707 ~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~V 786 (1088)
+++-+.+-.+.++-.|. ..|+++... ...|.+..-.|++.+..+ -.-+..++|+. |.+ +..+|+-
T Consensus 76 q~~v~Pg~v~al~s~n~-G~~l~ag~i---------~g~lYlWelssG~LL~v~-~aHYQ~ITcL~---fs~-dgs~iiT 140 (476)
T KOG0646|consen 76 QYIVLPGPVHALASSNL-GYFLLAGTI---------SGNLYLWELSSGILLNVL-SAHYQSITCLK---FSD-DGSHIIT 140 (476)
T ss_pred hhcccccceeeeecCCC-ceEEEeecc---------cCcEEEEEeccccHHHHH-HhhccceeEEE---EeC-CCcEEEe
Confidence 56666666666665544 455555421 234666655666655433 22334456554 444 3556664
Q ss_pred EeeeeCCCCCCCcceEEEEEEEe-------CCeEEEEEEE-EecCceeEecc----ccCeEE-EEECCEEEEEEeeeccC
Q 001387 787 GTAYVLPEENEPTKGRILVFIVE-------DGKLQLIAEK-ETKGAVYSLNA----FNGKLL-AAINQKIQLYKWMLRDD 853 (1088)
Q Consensus 787 GT~~~~~~e~~~~~Gri~v~~i~-------~~kl~~~~~~-~~~g~v~ai~~----~~g~Lv-~~~g~~l~v~~~~~~~~ 853 (1088)
|. .-|++++|.+. ++..+.++.. ++.=+|+.+.- .+.+|+ ++..+++++|++. .
T Consensus 141 gs----------kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS---~ 207 (476)
T KOG0646|consen 141 GS----------KDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLS---L 207 (476)
T ss_pred cC----------CCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEec---c
Confidence 43 45899999887 2234444443 34446666542 244666 5666888998874 2
Q ss_pred cccccccccccccceEEEEEEEeCCEEEEEeccccEEEEEEeccC---------------CeEEEEeccCCCceeEEEEE
Q 001387 854 GTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEE---------------GAIEERARDYNANWMSAVEI 918 (1088)
Q Consensus 854 ~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~---------------~~l~~~~~D~~~~~v~~~~~ 918 (1088)
| .|.....++..+.++.++-.+..+++|..--.+++..+..-+ .+...+-.......+|+...
T Consensus 208 g--~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLai 285 (476)
T KOG0646|consen 208 G--VLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAI 285 (476)
T ss_pred c--eeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEE
Confidence 2 233333333333444455557789999988888766543221 11111111112134555544
Q ss_pred eeCce-EEEEccCCcEEEEeeCC
Q 001387 919 LDDDI-YLGAENNFNLFTVRKNS 940 (1088)
Q Consensus 919 l~~~~-~l~~D~~gnl~~l~~~~ 940 (1088)
--+++ .+.+|.+|++.+.+...
T Consensus 286 s~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 286 STDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred ecCccEEEeeCCCCCEEEEecch
Confidence 33444 67899999999988653
No 87
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.49 E-value=16 Score=38.06 Aligned_cols=104 Identities=15% Similarity=0.178 Sum_probs=63.0
Q ss_pred EEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCC
Q 001387 718 ICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENE 797 (1088)
Q Consensus 718 i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~ 797 (1088)
++..+++++++++.++. ..+.-+|+++++.+..-.++..-+ |-..+ . ..|+++|+
T Consensus 16 LVV~~dskT~v~igSHs---------~~~~avd~~sG~~~We~ilg~RiE--~sa~v-v----gdfVV~GC--------- 70 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHS---------GIVIAVDPQSGNLIWEAILGVRIE--CSAIV-V----GDFVVLGC--------- 70 (354)
T ss_pred EEEecCCceEEEEecCC---------ceEEEecCCCCcEEeehhhCceee--eeeEE-E----CCEEEEEE---------
Confidence 34457778998887764 567888999988887666654333 22222 1 56899998
Q ss_pred CcceEEEEEEEeCCe-E-EEEEEEEecCceeEeccccCeEEEEECCEEEEEEee
Q 001387 798 PTKGRILVFIVEDGK-L-QLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWM 849 (1088)
Q Consensus 798 ~~~Gri~v~~i~~~k-l-~~~~~~~~~g~v~ai~~~~g~Lv~~~g~~l~v~~~~ 849 (1088)
.+|.+|++..+.+. + +.+...+ -.+.+.+.+.+.|+.+-...=..|.++
T Consensus 71 -y~g~lYfl~~~tGs~~w~f~~~~~--vk~~a~~d~~~glIycgshd~~~yalD 121 (354)
T KOG4649|consen 71 -YSGGLYFLCVKTGSQIWNFVILET--VKVRAQCDFDGGLIYCGSHDGNFYALD 121 (354)
T ss_pred -ccCcEEEEEecchhheeeeeehhh--hccceEEcCCCceEEEecCCCcEEEec
Confidence 57899999887542 2 1122112 234556667666665544333334443
No 88
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=91.32 E-value=7.1 Score=40.28 Aligned_cols=142 Identities=12% Similarity=0.089 Sum_probs=88.7
Q ss_pred CCeEEE-EecCcEEEEecCCcceeeeeeCCCCCcEEEEEEC--CCEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeEE
Q 001387 458 YNQLVQ-VTSGSVRLVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISC 534 (1088)
Q Consensus 458 ~~~ivQ-Vt~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~ 534 (1088)
+..|+- --.+.||+.|-.++..++....+. .+..+.+. +.++.++. ++.+.|.+.+ .|..+++.+++..|.+
T Consensus 155 D~~iLSSadd~tVRLWD~rTgt~v~sL~~~s--~VtSlEvs~dG~ilTia~-gssV~Fwdak--sf~~lKs~k~P~nV~S 229 (334)
T KOG0278|consen 155 DKCILSSADDKTVRLWDHRTGTEVQSLEFNS--PVTSLEVSQDGRILTIAY-GSSVKFWDAK--SFGLLKSYKMPCNVES 229 (334)
T ss_pred CceEEeeccCCceEEEEeccCcEEEEEecCC--CCcceeeccCCCEEEEec-CceeEEeccc--cccceeeccCcccccc
Confidence 455555 335789999887767777766544 46777754 56777765 6677776553 5667778888888888
Q ss_pred EEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecC
Q 001387 535 LDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMK 613 (1088)
Q Consensus 535 l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~ 613 (1088)
-++.| ...+++.|-. +..++-|+...-+.+....-....+.+++.+.+ +...--.|..||.+..++..+.
T Consensus 230 ASL~P------~k~~fVaGge-d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP--dGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 230 ASLHP------KKEFFVAGGE-DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP--DGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred ccccC------CCceEEecCc-ceEEEEEeccCCceeeecccCCCCceEEEEECC--CCceeeccCCCceEEEEEecCC
Confidence 77765 2345555544 777777777543332211111112445555443 2234456999999999988764
No 89
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.18 E-value=19 Score=36.88 Aligned_cols=165 Identities=13% Similarity=0.118 Sum_probs=88.9
Q ss_pred EeCCeEEEEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCce
Q 001387 688 AKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEY 767 (1088)
Q Consensus 688 ~~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~ 767 (1088)
+.+..+....+.....-..-+++.-+...+++|.+..+.++.+..++..++ ...+|.+- +|+.. ..++.
T Consensus 35 ~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~----~~fvR~Y~--NWr~~-----~~~~~ 103 (215)
T PF14761_consen 35 ASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSP----VDFVRAYF--NWRSQ-----KEENS 103 (215)
T ss_pred cCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCcc----ceEEEEEE--Ehhhh-----cccCC
Confidence 446667777776444445556666688889999999888877766542111 11566653 45432 12222
Q ss_pred EeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCcee--EeccccCeEEEEECCEEEE
Q 001387 768 GCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVY--SLNAFNGKLLAAINQKIQL 845 (1088)
Q Consensus 768 v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~--ai~~~~g~Lv~~~g~~l~v 845 (1088)
..++ -.+|.....+ -..+.+..+-+. +...+.++. |.|++.|.|++|+++++.+
T Consensus 104 ~v~v------------RiaG~~v~~~-~~~~~~~qleii-----------ElPl~~~p~ciaCC~~tG~LlVg~~~~l~l 159 (215)
T PF14761_consen 104 PVRV------------RIAGHRVTPS-FNESSKDQLEII-----------ELPLSEPPLCIACCPVTGNLLVGCGNKLVL 159 (215)
T ss_pred cEEE------------EEcccccccC-CCCccccceEEE-----------EecCCCCCCEEEecCCCCCEEEEcCCEEEE
Confidence 2332 2234221110 011111122222 234455555 4578899999999999999
Q ss_pred EEeeeccCccccc--ccc----cccccceEEEEEEEeCCEEEEEeccc
Q 001387 846 YKWMLRDDGTREL--QSE----CGHHGHILALYVQTRGDFIVVGDLMK 887 (1088)
Q Consensus 846 ~~~~~~~~~~~~L--~~~----~~~~~~~~~~~l~~~~~~I~vgD~~~ 887 (1088)
|.+....-...++ ... ........+..+...+++|.+-+-..
T Consensus 160 f~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic~~yiA~~s~~e 207 (215)
T PF14761_consen 160 FTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAICEGYIAVMSDLE 207 (215)
T ss_pred EEEEEEEEecccccEEechhhhhheecCceEEEEEEEeeEEEEecCCE
Confidence 9985321101111 111 11122235778888999887755444
No 90
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.95 E-value=22 Score=37.10 Aligned_cols=65 Identities=17% Similarity=0.264 Sum_probs=52.7
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEe-CCeEEEEEEEEecCceeEeccc---cCeEEEEEC-CEEEEEEe
Q 001387 781 NVYYCVGTAYVLPEENEPTKGRILVFIVE-DGKLQLIAEKETKGAVYSLNAF---NGKLLAAIN-QKIQLYKW 848 (1088)
Q Consensus 781 ~~~i~VGT~~~~~~e~~~~~Gri~v~~i~-~~kl~~~~~~~~~g~v~ai~~~---~g~Lv~~~g-~~l~v~~~ 848 (1088)
.++++|.|+..+ .....|||+++++. ...+.++.+.+....++.++=- .+.+++|+| ..+++|+.
T Consensus 21 ~nrLavAt~q~y---Gl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 21 ENRLAVATAQHY---GLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred cchhheeehhhc---ccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 567899998877 35688999999996 6679999999999999988733 345778888 78899885
No 91
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=90.73 E-value=25 Score=40.26 Aligned_cols=240 Identities=16% Similarity=0.199 Sum_probs=122.7
Q ss_pred cCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEE-------C--CCCce--EeEEEEEEEcCCCceE
Q 001387 715 PRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYP-------L--DTFEY--GCSILSCSFSDDSNVY 783 (1088)
Q Consensus 715 p~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~-------~--~~~E~--v~si~~~~~~~~~~~~ 783 (1088)
.+.+.|++..+.++|++.. +..+++|...++.+.... + -.+.. ++|.| |.- ..+.+|
T Consensus 217 i~sl~ys~Tg~~iLvvsg~----------aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~-whP-~~k~~F 284 (641)
T KOG0772|consen 217 INSLQYSVTGDQILVVSGS----------AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGC-WHP-DNKEEF 284 (641)
T ss_pred cceeeecCCCCeEEEEecC----------cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccc-ccc-Ccccce
Confidence 4567899999999988765 467888887666553211 1 11221 12211 211 111232
Q ss_pred EEEEeeeeCCCCCCCcceEEEEEEEeCCe--EEEEEEEEecC---ceeEeccc--cCeEE-EE-ECCEEEEEEeeeccCc
Q 001387 784 YCVGTAYVLPEENEPTKGRILVFIVEDGK--LQLIAEKETKG---AVYSLNAF--NGKLL-AA-INQKIQLYKWMLRDDG 854 (1088)
Q Consensus 784 i~VGT~~~~~~e~~~~~Gri~v~~i~~~k--l~~~~~~~~~g---~v~ai~~~--~g~Lv-~~-~g~~l~v~~~~~~~~~ 854 (1088)
+- + ..-|.+.+|++.+.| ++++......| +|+++ .| +|.++ +| ....|.+++. +
T Consensus 285 lT--~---------s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC-~~nrdg~~iAagc~DGSIQ~W~~-----~ 347 (641)
T KOG0772|consen 285 LT--C---------SYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSC-AWNRDGKLIAAGCLDGSIQIWDK-----G 347 (641)
T ss_pred EE--e---------cCCCcEEEEecCCchhheeEEeeccCCCcccCceee-ecCCCcchhhhcccCCceeeeec-----C
Confidence 22 1 234889999998643 55554443333 56554 45 35554 33 3467777553 2
Q ss_pred ccccc-----cccccccc-eEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCceEEE--
Q 001387 855 TRELQ-----SECGHHGH-ILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLG-- 926 (1088)
Q Consensus 855 ~~~L~-----~~~~~~~~-~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l~-- 926 (1088)
.+-.. +.|-.... +..++.+..||+++-=-.-+++.++..+.-...|...-.=+.+...+.|+|-.++.+|.
T Consensus 348 ~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TG 427 (641)
T KOG0772|consen 348 SRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTG 427 (641)
T ss_pred CcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEec
Confidence 22111 11211111 12233344577766555555666544433222233222224455567777776665443
Q ss_pred -----EccCCcEEEEeeCCCCCCcccccceeEEEEEEcCCccceEEeeeeeecCCCCCCCCccEEEEEcccccEEEEEec
Q 001387 927 -----AENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASL 1001 (1088)
Q Consensus 927 -----~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~~l~~t~~G~i~~l~~l 1001 (1088)
.+..|+|++|.. ..|+.+....+. -.+..+.. | ...-++|+.|+.+|.+.++..=
T Consensus 428 tS~~~~~~~g~L~f~d~----------~t~d~v~ki~i~--~aSvv~~~----W----hpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 428 TSAPNGMTAGTLFFFDR----------MTLDTVYKIDIS--TASVVRCL----W----HPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred ccccCCCCCceEEEEec----------cceeeEEEecCC--CceEEEEe----e----cchhhheeeecCCCceEEEECc
Confidence 345788888864 345555444433 11111111 1 1134689999999999887765
Q ss_pred Ch
Q 001387 1002 PH 1003 (1088)
Q Consensus 1002 ~~ 1003 (1088)
++
T Consensus 488 ~~ 489 (641)
T KOG0772|consen 488 NE 489 (641)
T ss_pred cc
Confidence 44
No 92
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=90.70 E-value=34 Score=38.69 Aligned_cols=104 Identities=19% Similarity=0.294 Sum_probs=61.9
Q ss_pred CCCCcEEEEE-ECCCEEEEEECCCeEEEEEEcCcE-E-EE-Eee--------ccCCceeEEEEeCCCCCCCCCccEEEEE
Q 001387 486 PPGYSVNVAT-ANASQVLLATGGGHLVYLEIGDGI-L-TE-VKH--------AQLEYEISCLDINPIGENPSYSQIAAVG 553 (1088)
Q Consensus 486 ~~~~~I~~a~-~~~~~lvv~~~~~~l~~~~~~~~~-l-~~-~~~--------~~l~~~is~l~~~~~~~~~~~~~~~~vg 553 (1088)
+.+.+|.+++ +++..++...++|.+.+-.+-..+ + .. +.+ ..-...|++++..+ +++.++-|
T Consensus 325 g~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~------~sdL~asG 398 (479)
T KOG0299|consen 325 GGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIP------GSDLLASG 398 (479)
T ss_pred CCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecc------cCceEEec
Confidence 3344788888 777888877778887665543211 1 11 111 11124789998754 57899999
Q ss_pred EecCCEEEEEECCC----CCceEEecCCCCcCceeEEeeeecCceEEEEEe
Q 001387 554 MWTDISVRIFSLPD----LNLITKEHLGGEIIPRSVLLCAFEGISYLLCAL 600 (1088)
Q Consensus 554 ~w~~~~i~i~~l~~----l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl 600 (1088)
.| +|.+++|.+.+ ++++..-++. ....++.+.. +...+++|.
T Consensus 399 S~-~G~vrLW~i~~g~r~i~~l~~ls~~--GfVNsl~f~~--sgk~ivagi 444 (479)
T KOG0299|consen 399 SW-SGCVRLWKIEDGLRAINLLYSLSLV--GFVNSLAFSN--SGKRIVAGI 444 (479)
T ss_pred CC-CCceEEEEecCCccccceeeecccc--cEEEEEEEcc--CCCEEEEec
Confidence 99 99999999864 3333332222 2345555443 223566664
No 93
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.67 E-value=42 Score=39.71 Aligned_cols=180 Identities=17% Similarity=0.136 Sum_probs=98.3
Q ss_pred ceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cCeEEEEEC--CEEEEEEeeeccCccccccc-ccccccceEEEEEEE
Q 001387 800 KGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAIN--QKIQLYKWMLRDDGTRELQS-ECGHHGHILALYVQT 875 (1088)
Q Consensus 800 ~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g~Lv~~~g--~~l~v~~~~~~~~~~~~L~~-~~~~~~~~~~~~l~~ 875 (1088)
.+.+.+|++..+.-.+..-..+...|++++-. +|.++++.+ .+|++++.. . + +..+ ...+...+..++...
T Consensus 224 D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~--~-~--~~~~~l~~hs~~is~~~f~~ 298 (456)
T KOG0266|consen 224 DKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR--T-G--ECVRKLKGHSDGISGLAFSP 298 (456)
T ss_pred CceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEecc--C-C--eEEEeeeccCCceEEEEECC
Confidence 46889999953322222233788899998855 455555444 667776642 1 2 2222 223333344455556
Q ss_pred eCCEEEEEeccccEEEEEEeccCCe---EEEEeccCCCceeEEEEEeeCce-EEEEccCCcEEEEeeCCCCCCcccccce
Q 001387 876 RGDFIVVGDLMKSISLLIYKHEEGA---IEERARDYNANWMSAVEILDDDI-YLGAENNFNLFTVRKNSEGATDEERGRL 951 (1088)
Q Consensus 876 ~~~~I~vgD~~~Sv~~~~~~~~~~~---l~~~~~D~~~~~v~~~~~l~~~~-~l~~D~~gnl~~l~~~~~~~~~~~~~~L 951 (1088)
.+++++.++. ++.. ..|+....+ +..+..+..+..++.+.|=.+.. ++.+-.++.+.++.+.... .+
T Consensus 299 d~~~l~s~s~-d~~i-~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~-------~~ 369 (456)
T KOG0266|consen 299 DGNLLVSASY-DGTI-RVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK-------SV 369 (456)
T ss_pred CCCEEEEcCC-CccE-EEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCc-------ce
Confidence 6889999966 5542 336766655 34455554444677777755544 4555456677776665321 11
Q ss_pred eEEEEEEcCCccceEEeeeeeecCCCCCCCCccEEEEEcccccEEEEEecCh
Q 001387 952 EVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPH 1003 (1088)
Q Consensus 952 ~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~~l~~t~~G~i~~l~~l~~ 1003 (1088)
......+.+ +.++..... .....-++-|..+|.|...-+-+.
T Consensus 370 ~~~~~~~~~--~~~~~~~~~--------~~~~~~i~sg~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 370 GTYTGHSNL--VRCIFSPTL--------STGGKLIYSGSEDGSVYVWDSSSG 411 (456)
T ss_pred eeecccCCc--ceeEecccc--------cCCCCeEEEEeCCceEEEEeCCcc
Confidence 111111111 233322111 234567788899999997766553
No 94
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=90.19 E-value=41 Score=38.84 Aligned_cols=146 Identities=16% Similarity=0.236 Sum_probs=94.9
Q ss_pred ccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCC------------
Q 001387 547 SQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKT------------ 614 (1088)
Q Consensus 547 ~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~------------ 614 (1088)
.++++|-.- ||.+.+|.=+. ..+...++.-..|.-+.++. ....+++...+..|.+|+.....
T Consensus 145 ~~~IcVQS~-DG~L~~feqe~--~~f~~~lp~~llPgPl~Y~~--~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~ 219 (418)
T PF14727_consen 145 RDFICVQSM-DGSLSFFEQES--FAFSRFLPDFLLPGPLCYCP--RTDSFVTASSSWTLECYKYQDLASASEASSRQSGT 219 (418)
T ss_pred ceEEEEEec-CceEEEEeCCc--EEEEEEcCCCCCCcCeEEee--cCCEEEEecCceeEEEecHHHhhhccccccccccc
Confidence 567787766 99999988443 22344454434566666553 34567777778899999863210
Q ss_pred -------CccccceeeecCccceeEEEEEe-CCceEEEEecCCceEEEecCCcEEEeecccccceeeeccCCCC--CCC-
Q 001387 615 -------GELTDRKKVSLGTQPITLRTFSS-KNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAA--FPD- 683 (1088)
Q Consensus 615 -------~~l~~~~~~~lG~~pv~l~~~~~-~~~~~v~~~~~~p~~i~~~~~~~~~~~l~~~~i~~~~~f~~~~--~~~- 683 (1088)
..+....+..+|...+.+..++. ...+.|++.|++..++..++|.++|..--.-...++++|.... .++
T Consensus 220 ~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~ 299 (418)
T PF14727_consen 220 EQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGERSLFCLKDNGSLRFQKRLDYNPSCFCPYRVPWYNEPST 299 (418)
T ss_pred cccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEecceEEEEcCCCeEEEEEecCCceeeEEEEEeecccCCCC
Confidence 11233345678998888877653 3567899999999999999998877543333456778886632 222
Q ss_pred --eEEE-EeCCeEEEEE
Q 001387 684 --SLAI-AKEGELTIGT 697 (1088)
Q Consensus 684 --~l~~-~~~~~l~i~~ 697 (1088)
.++. .+++.|.|.+
T Consensus 300 ~~~llV~t~t~~LlVy~ 316 (418)
T PF14727_consen 300 RLNLLVGTHTGTLLVYE 316 (418)
T ss_pred ceEEEEEecCCeEEEEe
Confidence 2444 4577777766
No 95
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.03 E-value=25 Score=36.17 Aligned_cols=242 Identities=19% Similarity=0.228 Sum_probs=129.7
Q ss_pred cCcEEEEecCCcceeeeeeCCCCCcEEEEEECC--CEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCC
Q 001387 466 SGSVRLVSSTSRELRNEWKSPPGYSVNVATANA--SQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGEN 543 (1088)
Q Consensus 466 ~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~~--~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~ 543 (1088)
.+.||+.++..+..+.+.. ..|.+|..|+... ..+.-+-.+..+.+..+..|+....- .--..+|.++.++.
T Consensus 38 drtvrLWNp~rg~liktYs-ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~-rgH~aqVNtV~fNe---- 111 (307)
T KOG0316|consen 38 DRTVRLWNPLRGALIKTYS-GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRF-RGHLAQVNTVRFNE---- 111 (307)
T ss_pred CceEEeecccccceeeeec-CCCceeeeccccccccccccCCCCceEEEEEcccCeeeeec-ccccceeeEEEecC----
Confidence 4667888877666666643 4667888887542 23332222345666777766543211 12356788888863
Q ss_pred CCCccEEEEEEecCCEEEEEECC--CCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccce
Q 001387 544 PSYSQIAAVGMWTDISVRIFSLP--DLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRK 621 (1088)
Q Consensus 544 ~~~~~~~~vg~w~~~~i~i~~l~--~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~ 621 (1088)
.+..++-|.. |.++++|+-. ..+++-.-.-..+ ...|+.+. ...++.|.-||.+-.|.+...+ +..
T Consensus 112 --esSVv~Sgsf-D~s~r~wDCRS~s~ePiQildea~D-~V~Si~v~----~heIvaGS~DGtvRtydiR~G~--l~s-- 179 (307)
T KOG0316|consen 112 --ESSVVASGSF-DSSVRLWDCRSRSFEPIQILDEAKD-GVSSIDVA----EHEIVAGSVDGTVRTYDIRKGT--LSS-- 179 (307)
T ss_pred --cceEEEeccc-cceeEEEEcccCCCCccchhhhhcC-ceeEEEec----ccEEEeeccCCcEEEEEeecce--eeh--
Confidence 2556666766 9999999864 3455421111111 23455444 4678889999999999987642 211
Q ss_pred eeecCccceeEEEEEeCCceEEEEecCCce--EEEecCCcEE--EeecccccceeeeccCCCCCCCe-EEEEe-CCeEEE
Q 001387 622 KVSLGTQPITLRTFSSKNTTHVFAASDRPT--VIYSSNKKLL--YSNVNLKEVSHMCPFNSAAFPDS-LAIAK-EGELTI 695 (1088)
Q Consensus 622 ~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~--~i~~~~~~~~--~~~l~~~~i~~~~~f~~~~~~~~-l~~~~-~~~l~i 695 (1088)
-.+| .|+.=..| .++.+++++.+=... ++-.+.|++. |-.....+..-=|.++.. +. ++-.+ ++.+.+
T Consensus 180 -Dy~g-~pit~vs~-s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qs---dthV~sgSEDG~Vy~ 253 (307)
T KOG0316|consen 180 -DYFG-HPITSVSF-SKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQS---DTHVFSGSEDGKVYF 253 (307)
T ss_pred -hhcC-CcceeEEe-cCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeeccc---ceeEEeccCCceEEE
Confidence 1122 35543444 235577777653333 3333334431 111111111111222211 11 22222 333444
Q ss_pred EEEcCCCCeEEEEEeCCCcc--CeEEEecCCCEEEEEEee
Q 001387 696 GTIDDIQKLHIRSIPLGEHP--RRICHQEQSRTFAICSLK 733 (1088)
Q Consensus 696 ~~l~~~~~~~~~~i~l~~tp--~~i~y~~~~~~~~v~~~~ 733 (1088)
-.+.+ .-.+.+++...+| ..+.|||....|.+++.+
T Consensus 254 wdLvd--~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~ 291 (307)
T KOG0316|consen 254 WDLVD--ETQISKLSVVSTVIVTDLSCHPTMDDFITATGH 291 (307)
T ss_pred EEecc--ceeeeeeccCCceeEEeeecccCccceeEecCC
Confidence 44433 2345566666655 568899999988888765
No 96
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=89.78 E-value=44 Score=38.62 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=59.6
Q ss_pred ECCCEEEEEECCCeEEEEEEcCcEEEEEeeccCCcee---E-----EEEeCCCCCCCCCccEEEEEEecCCEEEEEECCC
Q 001387 496 ANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEI---S-----CLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD 567 (1088)
Q Consensus 496 ~~~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~i---s-----~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~ 567 (1088)
+.++.+++...++.+..++.++|+..=. .++..+. + -++-.+. .....+.++.. ++.+.-++..+
T Consensus 67 v~~~~vy~~~~~g~l~ald~~tG~~~W~--~~~~~~~~~~~~~~~~~~~~~~~----v~~~~v~v~~~-~g~l~ald~~t 139 (394)
T PRK11138 67 VAYNKVYAADRAGLVKALDADTGKEIWS--VDLSEKDGWFSKNKSALLSGGVT----VAGGKVYIGSE-KGQVYALNAED 139 (394)
T ss_pred EECCEEEEECCCCeEEEEECCCCcEeeE--EcCCCcccccccccccccccccE----EECCEEEEEcC-CCEEEEEECCC
Confidence 4566777766667777777666543211 1111100 0 0000000 01456778877 88888888877
Q ss_pred CCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCcccc
Q 001387 568 LNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTD 619 (1088)
Q Consensus 568 l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~ 619 (1088)
-+++++..++.... .+..+. ...++++..+|.++.++ ..+|++..
T Consensus 140 G~~~W~~~~~~~~~-ssP~v~----~~~v~v~~~~g~l~ald--~~tG~~~W 184 (394)
T PRK11138 140 GEVAWQTKVAGEAL-SRPVVS----DGLVLVHTSNGMLQALN--ESDGAVKW 184 (394)
T ss_pred CCCcccccCCCcee-cCCEEE----CCEEEEECCCCEEEEEE--ccCCCEee
Confidence 77777665543211 111222 24688899999776655 44565543
No 97
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=89.56 E-value=6.6 Score=45.47 Aligned_cols=183 Identities=15% Similarity=0.226 Sum_probs=101.3
Q ss_pred CCeEEEEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCc---------eEEEEE
Q 001387 690 EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTF---------EFISTY 760 (1088)
Q Consensus 690 ~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~---------~~i~~~ 760 (1088)
++.++|-.+-+ .-.+|++.+++..++|++.|..+.-+++..-. .++-++++.=+ +.+.+.
T Consensus 421 DGtvriWEi~T--gRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~---------~~~~ivnp~~G~~~e~~~t~ell~~~ 489 (733)
T KOG0650|consen 421 DGTVRIWEIAT--GRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVG---------ECVLIVNPIFGDRLEVGPTKELLASA 489 (733)
T ss_pred CCcEEEEEeec--ceEEEEEeecceeEEEEecCCCCceeEEEEec---------CceEEeCccccchhhhcchhhhhhcC
Confidence 56777777765 34789999999999999998777655544321 12334443211 111111
Q ss_pred ----------------ECCCCceEeEEEEEEEcC-------CCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEE
Q 001387 761 ----------------PLDTFEYGCSILSCSFSD-------DSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIA 817 (1088)
Q Consensus 761 ----------------~~~~~E~v~si~~~~~~~-------~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~ 817 (1088)
..++.|.-.|+.....+. .+..||++-..- ...-++++.++.+++-+ ..
T Consensus 490 ~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~-------~~~~~VliHQLSK~~sQ-~P 561 (733)
T KOG0650|consen 490 PNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPD-------SGNKSVLIHQLSKRKSQ-SP 561 (733)
T ss_pred CCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccC-------CCcceEEEEeccccccc-Cc
Confidence 111222222222222211 124566643321 12347778877654433 22
Q ss_pred EEEecCceeEec--cccCeEEEEECCEEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEEEEeccccEEEEEEe
Q 001387 818 EKETKGAVYSLN--AFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYK 895 (1088)
Q Consensus 818 ~~~~~g~v~ai~--~~~g~Lv~~~g~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~ 895 (1088)
-..-+|-|.++. +...+|++|.-..|++|++.-+ .-.|+|..-|.+. ..+++...|+-+++|..-+-+..+-.+
T Consensus 562 F~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq-elvKkL~tg~kwi---S~msihp~GDnli~gs~d~k~~WfDld 637 (733)
T KOG0650|consen 562 FRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ-ELVKKLLTGSKWI---SSMSIHPNGDNLILGSYDKKMCWFDLD 637 (733)
T ss_pred hhhcCCceeEEEecCCCceEEEEeccceEEEehhHH-HHHHHHhcCCeee---eeeeecCCCCeEEEecCCCeeEEEEcc
Confidence 234577777765 3356899999999999998422 2234454444332 234455567888888877776544433
No 98
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=89.27 E-value=21 Score=40.27 Aligned_cols=203 Identities=13% Similarity=0.116 Sum_probs=104.2
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cCeEEEEECCEEEEEEeeecc----Ccc
Q 001387 781 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAINQKIQLYKWMLRD----DGT 855 (1088)
Q Consensus 781 ~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g~Lv~~~g~~l~v~~~~~~~----~~~ 855 (1088)
..|++.|| -+|.||+|++..++|-.+. ..+=.+|+++..- +|..++..|+.=.|+-|...+ +..
T Consensus 93 G~~l~ag~----------i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~ 161 (476)
T KOG0646|consen 93 GYFLLAGT----------ISGNLYLWELSSGILLNVL-SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADND 161 (476)
T ss_pred ceEEEeec----------ccCcEEEEEeccccHHHHH-HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccC
Confidence 45666666 4689999999866543222 3344578888765 567777777665555554221 111
Q ss_pred cccccccccccce-EEEEEEEe----CCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeC-c-eEEEEc
Q 001387 856 RELQSECGHHGHI-LALYVQTR----GDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDD-D-IYLGAE 928 (1088)
Q Consensus 856 ~~L~~~~~~~~~~-~~~~l~~~----~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~-~-~~l~~D 928 (1088)
....+.+.+..+. .++++.+- +.+++..-.-+-+.++ +-..+.|..-. ..|...+|+. +|. + .+.++-
T Consensus 162 ~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~w--dlS~g~LLlti--~fp~si~av~-lDpae~~~yiGt 236 (476)
T KOG0646|consen 162 HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLW--DLSLGVLLLTI--TFPSSIKAVA-LDPAERVVYIGT 236 (476)
T ss_pred CCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEE--EeccceeeEEE--ecCCcceeEE-EcccccEEEecC
Confidence 1122233333332 34455432 2356555555555443 32333332222 2344444432 333 2 456667
Q ss_pred cCCcEEEEeeCCCCCCccc----ccce--eE--EEEEEcC-CccceEEeeeeeecCCCCCCCCccEEEEEcccccEEEEE
Q 001387 929 NNFNLFTVRKNSEGATDEE----RGRL--EV--VGEYHLG-EFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIA 999 (1088)
Q Consensus 929 ~~gnl~~l~~~~~~~~~~~----~~~L--~~--~~~f~lg-~~v~~~~~~~l~~~~~~~~~~~~~~~l~~t~~G~i~~l~ 999 (1088)
.+|++++..+..-...+.+ +... .. ...=|-+ +.|+|+.- ..++.-++-|..||.+-.--
T Consensus 237 ~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLai-----------s~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 237 EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAI-----------STDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEE-----------ecCccEEEeeCCCCCEEEEe
Confidence 9999999887654432210 0000 00 1111222 34555432 13556788888999888666
Q ss_pred ecChhHHHHHH
Q 001387 1000 SLPHEQYLFLE 1010 (1088)
Q Consensus 1000 ~l~~~~~~~L~ 1010 (1088)
+-+.+-.|.|.
T Consensus 306 i~S~Q~iRtl~ 316 (476)
T KOG0646|consen 306 IYSKQCIRTLQ 316 (476)
T ss_pred cchHHHHHHHh
Confidence 66665555444
No 99
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.13 E-value=2.4 Score=46.37 Aligned_cols=91 Identities=23% Similarity=0.317 Sum_probs=66.0
Q ss_pred eEEEEEEeCCCc-eEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEe
Q 001387 743 MHFVRLLDDQTF-EFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKET 821 (1088)
Q Consensus 743 ~s~l~lid~~t~-~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~ 821 (1088)
.+.++++|+... +.+.++.|. |.+.+. +.+. .+.++|.+|. ++|.+-.|++..+++--+.-..+
T Consensus 225 ~hqvR~YDt~~qRRPV~~fd~~--E~~is~--~~l~-p~gn~Iy~gn----------~~g~l~~FD~r~~kl~g~~~kg~ 289 (412)
T KOG3881|consen 225 YHQVRLYDTRHQRRPVAQFDFL--ENPISS--TGLT-PSGNFIYTGN----------TKGQLAKFDLRGGKLLGCGLKGI 289 (412)
T ss_pred ceeEEEecCcccCcceeEeccc--cCccee--eeec-CCCcEEEEec----------ccchhheecccCceeeccccCCc
Confidence 478999999765 477777776 554332 2222 2367788886 56888899988777777777889
Q ss_pred cCceeEeccccC-eEEEEEC--CEEEEEEe
Q 001387 822 KGAVYSLNAFNG-KLLAAIN--QKIQLYKW 848 (1088)
Q Consensus 822 ~g~v~ai~~~~g-~Lv~~~g--~~l~v~~~ 848 (1088)
.|.+.+|....+ .+++++| .-|+||+.
T Consensus 290 tGsirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 290 TGSIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred cCCcceEEEcCCCceEEeeccceeEEEeec
Confidence 999999988855 6777777 56677775
No 100
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=88.95 E-value=31 Score=40.11 Aligned_cols=206 Identities=15% Similarity=0.145 Sum_probs=112.0
Q ss_pred ceEEE-EEeCCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEecCCceEEEecCCcEEEe---ecccc
Q 001387 593 ISYLL-CALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYS---NVNLK 668 (1088)
Q Consensus 593 ~~~L~-vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~i~~~~~~~~~~---~l~~~ 668 (1088)
..|++ .|+--=.+-+|.+... +|++ .+.+-..+|.+.++..+-...||..+||..=+....| ..|. |-...
T Consensus 63 GqY~lAtG~YKP~ikvydlanL--SLKF--ERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G-~hy~~RIP~~GR 137 (703)
T KOG2321|consen 63 GQYLLATGTYKPQIKVYDLANL--SLKF--ERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG-RHYRTRIPKFGR 137 (703)
T ss_pred CcEEEEecccCCceEEEEcccc--eeee--eecccccceeEEEeccchhhheEeecCceeeehhhcC-eeeeeecCcCCc
Confidence 34444 4766667777877542 2443 3456677888888754445678888887654433222 2221 11111
Q ss_pred cceeeeccCCCCCCCeEEEEeCCeEEEEEEcCCCCeEEEEEeCCCc-cCeEEEecCCCEEEEEEeecCCCcCcceeEEEE
Q 001387 669 EVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEH-PRRICHQEQSRTFAICSLKNQSCAEESEMHFVR 747 (1088)
Q Consensus 669 ~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~~~~~~i~l~~t-p~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~ 747 (1088)
.+ .++.+.|. +++-+.+..+.+++-.++-..+.+.+... ...+--.+...++++++. .+.++
T Consensus 138 Dm----~y~~~scD---ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~----------~g~VE 200 (703)
T KOG2321|consen 138 DM----KYHKPSCD---LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTE----------DGVVE 200 (703)
T ss_pred cc----cccCCCcc---EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEeccc----------CceEE
Confidence 11 12333332 33333334445555444333333333322 223334455555555542 37899
Q ss_pred EEeCCCceEEEEEECCCC-------ceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEE
Q 001387 748 LLDDQTFEFISTYPLDTF-------EYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKE 820 (1088)
Q Consensus 748 lid~~t~~~i~~~~~~~~-------E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~ 820 (1088)
++||.+.+.+.+++...+ ...-++..+.|.++ .-.++||| +.|.+|+|++.-.+--++..+.
T Consensus 201 fwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~-gL~~aVGt----------s~G~v~iyDLRa~~pl~~kdh~ 269 (703)
T KOG2321|consen 201 FWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDD-GLHVAVGT----------STGSVLIYDLRASKPLLVKDHG 269 (703)
T ss_pred EecchhhhhheeeecccccCCCccccccCcceEEEecCC-ceeEEeec----------cCCcEEEEEcccCCceeecccC
Confidence 999987776666655433 11123445566653 55689998 5699999999855555555555
Q ss_pred ecCceeEeccc
Q 001387 821 TKGAVYSLNAF 831 (1088)
Q Consensus 821 ~~g~v~ai~~~ 831 (1088)
..-|+-.+.-.
T Consensus 270 ~e~pi~~l~~~ 280 (703)
T KOG2321|consen 270 YELPIKKLDWQ 280 (703)
T ss_pred Cccceeeeccc
Confidence 56666666543
No 101
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.95 E-value=21 Score=36.69 Aligned_cols=146 Identities=19% Similarity=0.259 Sum_probs=79.6
Q ss_pred eeccccceeeeecCCCeEEEEecCcEEEEecCCcceeeeeeCCCCCcEEEEEEC--CCEEEEEECCCeEEEEEEcCcEEE
Q 001387 444 FCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLATGGGHLVYLEIGDGILT 521 (1088)
Q Consensus 444 f~~~~~Ti~~~~~~~~~ivQVt~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~~~~~l~~~~~~~~~l~ 521 (1088)
.+.++.-|.+|.+ + -.+|.++...++...+. .|.+|.+.+.. ++..++..=++.+.++.-+.|++-
T Consensus 151 i~v~~heIvaGS~-D--------GtvRtydiR~G~l~sDy---~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL 218 (307)
T KOG0316|consen 151 IDVAEHEIVAGSV-D--------GTVRTYDIRKGTLSSDY---FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLL 218 (307)
T ss_pred EEecccEEEeecc-C--------CcEEEEEeecceeehhh---cCCcceeEEecCCCCEEEEeeccceeeecccchhHHH
Confidence 3444455555554 2 23455554433344332 45678888864 445555554777777654445543
Q ss_pred E--EeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEE
Q 001387 522 E--VKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCA 599 (1088)
Q Consensus 522 ~--~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vg 599 (1088)
. ..+...+...-|- +. .+...+++...||.+.+|+|-+-.++.........+..++...+ ..+.+++.
T Consensus 219 ~sYkGhkn~eykldc~-l~-------qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp--~~~~f~~A 288 (307)
T KOG0316|consen 219 KSYKGHKNMEYKLDCC-LN-------QSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHP--TMDDFITA 288 (307)
T ss_pred HHhcccccceeeeeee-ec-------ccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeeccc--CccceeEe
Confidence 2 2344555555332 11 13344444455999999999876655443332222234443332 34568888
Q ss_pred eCCCcEEEEEEe
Q 001387 600 LGDGHLLNFLLN 611 (1088)
Q Consensus 600 l~~G~l~~y~~~ 611 (1088)
+..|.+..|+-+
T Consensus 289 ~~~~~~~~~~~~ 300 (307)
T KOG0316|consen 289 TGHGDLFWYQEN 300 (307)
T ss_pred cCCceeceeehh
Confidence 888888777643
No 102
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=88.89 E-value=37 Score=36.56 Aligned_cols=114 Identities=14% Similarity=0.063 Sum_probs=66.0
Q ss_pred CcEEEEEECCCEEEEEECCCeEEEEEEcC-cEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCC
Q 001387 489 YSVNVATANASQVLLATGGGHLVYLEIGD-GILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD 567 (1088)
Q Consensus 489 ~~I~~a~~~~~~lvv~~~~~~l~~~~~~~-~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~ 567 (1088)
.+|++.++++.+++-..++-.|..+.+.. .++..+ ..-...|+|+.+.+= ....+++-|.. ||.|.+|+..+
T Consensus 44 ~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~l--l~HagsitaL~F~~~----~S~shLlS~sd-DG~i~iw~~~~ 116 (362)
T KOG0294|consen 44 GSITALAVSGPYVASGSSDETIHIYDMRKRKQLGIL--LSHAGSITALKFYPP----LSKSHLLSGSD-DGHIIIWRVGS 116 (362)
T ss_pred cceeEEEecceeEeccCCCCcEEEEeccchhhhcce--eccccceEEEEecCC----cchhheeeecC-CCcEEEEEcCC
Confidence 37999999988887666666777777654 112111 112567889887531 11236666666 99999999988
Q ss_pred CCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEec
Q 001387 568 LNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNM 612 (1088)
Q Consensus 568 l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~ 612 (1088)
++++....-.. .....+.+.+- ++..|-|| +|+.+-.+++..
T Consensus 117 W~~~~slK~H~-~~Vt~lsiHPS-~KLALsVg-~D~~lr~WNLV~ 158 (362)
T KOG0294|consen 117 WELLKSLKAHK-GQVTDLSIHPS-GKLALSVG-GDQVLRTWNLVR 158 (362)
T ss_pred eEEeeeecccc-cccceeEecCC-CceEEEEc-CCceeeeehhhc
Confidence 76654321111 11233333331 23444444 477777766543
No 103
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=88.80 E-value=50 Score=37.88 Aligned_cols=104 Identities=20% Similarity=0.223 Sum_probs=60.6
Q ss_pred ECCCEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeE-EEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEe
Q 001387 496 ANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIS-CLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKE 574 (1088)
Q Consensus 496 ~~~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is-~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~ 574 (1088)
+.++.+++...++.+..++..+|+..= +.++...+. ...+ ....+++++. ++.+..++..+-++++..
T Consensus 63 v~~~~v~v~~~~g~v~a~d~~tG~~~W--~~~~~~~~~~~p~v--------~~~~v~v~~~-~g~l~ald~~tG~~~W~~ 131 (377)
T TIGR03300 63 VAGGKVYAADADGTVVALDAETGKRLW--RVDLDERLSGGVGA--------DGGLVFVGTE-KGEVIALDAEDGKELWRA 131 (377)
T ss_pred EECCEEEEECCCCeEEEEEccCCcEee--eecCCCCcccceEE--------cCCEEEEEcC-CCEEEEEECCCCcEeeee
Confidence 446677777667777777665555321 122333321 1222 1467788887 899999998777777765
Q ss_pred cCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCcc
Q 001387 575 HLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGEL 617 (1088)
Q Consensus 575 ~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l 617 (1088)
.+..... .+..+ ....++++..+|.|+.+.. .+|+.
T Consensus 132 ~~~~~~~-~~p~v----~~~~v~v~~~~g~l~a~d~--~tG~~ 167 (377)
T TIGR03300 132 KLSSEVL-SPPLV----ANGLVVVRTNDGRLTALDA--ATGER 167 (377)
T ss_pred ccCceee-cCCEE----ECCEEEEECCCCeEEEEEc--CCCce
Confidence 5543211 11111 1346888899998877654 34544
No 104
>PTZ00421 coronin; Provisional
Probab=88.77 E-value=59 Score=38.74 Aligned_cols=77 Identities=18% Similarity=0.088 Sum_probs=47.0
Q ss_pred CceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceE-----EecCC-CCcCceeEEeeeecCceEEEEEeCC
Q 001387 529 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLIT-----KEHLG-GEIIPRSVLLCAFEGISYLLCALGD 602 (1088)
Q Consensus 529 ~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~-----~~~l~-~~~~p~si~~~~~~~~~~L~vgl~~ 602 (1088)
...|.++++.|.. ...++.|.+ |++|.+|++++-.... ...+. ......++.+.+ .+..+|+.|..|
T Consensus 75 ~~~V~~v~fsP~d-----~~~LaSgS~-DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P-~~~~iLaSgs~D 147 (493)
T PTZ00421 75 EGPIIDVAFNPFD-----PQKLFTASE-DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHP-SAMNVLASAGAD 147 (493)
T ss_pred CCCEEEEEEcCCC-----CCEEEEEeC-CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCc-CCCCEEEEEeCC
Confidence 4578999987632 457888888 9999999997522100 01111 111222333322 123578889999
Q ss_pred CcEEEEEEec
Q 001387 603 GHLLNFLLNM 612 (1088)
Q Consensus 603 G~l~~y~~~~ 612 (1088)
|.+..|.+..
T Consensus 148 gtVrIWDl~t 157 (493)
T PTZ00421 148 MVVNVWDVER 157 (493)
T ss_pred CEEEEEECCC
Confidence 9999988754
No 105
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=88.65 E-value=42 Score=40.24 Aligned_cols=80 Identities=18% Similarity=0.250 Sum_probs=47.9
Q ss_pred cCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCc--eEE-ecCCCC-cCceeEEe-eeecCceEEEEEeC
Q 001387 527 QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNL--ITK-EHLGGE-IIPRSVLL-CAFEGISYLLCALG 601 (1088)
Q Consensus 527 ~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~--~~~-~~l~~~-~~p~si~~-~~~~~~~~L~vgl~ 601 (1088)
.-..+|+|+.+.+.. ...++.|++ +|.+.+|.+....- ... ...... ..|....+ +.......++.+..
T Consensus 240 ~~~s~v~~~~f~p~~-----p~ll~gG~y-~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ss 313 (555)
T KOG1587|consen 240 ESPSEVTCLKFCPFD-----PNLLAGGCY-NGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSS 313 (555)
T ss_pred ecCCceeEEEeccCC-----cceEEeecc-CceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEec
Confidence 345678999998743 678888999 99999999864222 111 111100 11111111 11122245777888
Q ss_pred CCcEEEEEEec
Q 001387 602 DGHLLNFLLNM 612 (1088)
Q Consensus 602 ~G~l~~y~~~~ 612 (1088)
||.+..++.+.
T Consensus 314 DG~i~~W~~~~ 324 (555)
T KOG1587|consen 314 DGSICSWDTDM 324 (555)
T ss_pred CCcEeeeeccc
Confidence 99999998764
No 106
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=88.63 E-value=39 Score=36.47 Aligned_cols=120 Identities=23% Similarity=0.354 Sum_probs=70.0
Q ss_pred CCcEEEEEEC-CC-EEEEEECCCe-EEEEEEcCc-EEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEE
Q 001387 488 GYSVNVATAN-AS-QVLLATGGGH-LVYLEIGDG-ILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 563 (1088)
Q Consensus 488 ~~~I~~a~~~-~~-~lvv~~~~~~-l~~~~~~~~-~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~ 563 (1088)
+..|.+.+.+ +. .+.-+...|. +..|...+| .+.|..+=.-..+|-|++++| .+.+++|+.. .|+++||
T Consensus 181 ~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp------~~s~LavsSd-KgTlHiF 253 (346)
T KOG2111|consen 181 DSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP------NSSWLAVSSD-KGTLHIF 253 (346)
T ss_pred cCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC------CccEEEEEcC-CCeEEEE
Confidence 3468888876 33 3333333444 445554444 466665434456789999976 4778998877 8999999
Q ss_pred ECCCCCceEE--ecCC--CCcCce----------------eEEeeeecCc-eEEEEEeCCCcEEEEEEecCC
Q 001387 564 SLPDLNLITK--EHLG--GEIIPR----------------SVLLCAFEGI-SYLLCALGDGHLLNFLLNMKT 614 (1088)
Q Consensus 564 ~l~~l~~~~~--~~l~--~~~~p~----------------si~~~~~~~~-~~L~vgl~~G~l~~y~~~~~~ 614 (1088)
++.+-+.-.. ..++ .-..|+ +.+++.++.+ +.+++-..||....|.+++.+
T Consensus 254 ~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~~ 325 (346)
T KOG2111|consen 254 SLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFDPKN 325 (346)
T ss_pred EeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEecccc
Confidence 9964221000 1111 001111 2233445544 566666668999999998864
No 107
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=87.99 E-value=70 Score=38.64 Aligned_cols=118 Identities=17% Similarity=0.221 Sum_probs=74.6
Q ss_pred EEEEEE--EEecCceeEeccc-cCe-EEEE-ECCEEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEEEEeccc
Q 001387 813 LQLIAE--KETKGAVYSLNAF-NGK-LLAA-INQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMK 887 (1088)
Q Consensus 813 l~~~~~--~~~~g~v~ai~~~-~g~-Lv~~-~g~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~ 887 (1088)
|++.+. .+++.-|.|+..- +|+ |+++ .++++.+|-++ .-+-.+..-.+..++..+.++...+.|+.|-+-+
T Consensus 497 lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflD----tlKFflsLYGHkLPV~smDIS~DSklivTgSADK 572 (888)
T KOG0306|consen 497 LSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLD----TLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADK 572 (888)
T ss_pred eeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEec----ceeeeeeecccccceeEEeccCCcCeEEeccCCC
Confidence 555554 4567888888755 455 4444 56899999874 2122222223333444455566678999999999
Q ss_pred cEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCce-EEEEccCCcEEEEe
Q 001387 888 SISLLIYKHEEGAIEERARDYNANWMSAVEILDDDI-YLGAENNFNLFTVR 937 (1088)
Q Consensus 888 Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~-~l~~D~~gnl~~l~ 937 (1088)
.|.++..+..+=.-..+|.| -.|+++.|+.++. ++.+-++|-+--++
T Consensus 573 nVKiWGLdFGDCHKS~fAHd---DSvm~V~F~P~~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 573 NVKIWGLDFGDCHKSFFAHD---DSVMSVQFLPKTHLFFTCGKDGKVKQWD 620 (888)
T ss_pred ceEEeccccchhhhhhhccc---CceeEEEEcccceeEEEecCcceEEeec
Confidence 99987665433222233322 4678899998764 67788888877553
No 108
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=87.97 E-value=38 Score=35.60 Aligned_cols=171 Identities=12% Similarity=0.082 Sum_probs=92.1
Q ss_pred EEEEEEeCCCceEEEEEECCCC-ceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEec
Q 001387 744 HFVRLLDDQTFEFISTYPLDTF-EYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETK 822 (1088)
Q Consensus 744 s~l~lid~~t~~~i~~~~~~~~-E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~ 822 (1088)
+.|..+|+.+++.+.++.+++. ....+.. +. ...++++++ ..|.|+.|++..+++ +.+.+.+
T Consensus 3 g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~---~~--~~~~v~~~~----------~~~~l~~~d~~tG~~--~W~~~~~ 65 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLGPGIGGPVATA---VP--DGGRVYVAS----------GDGNLYALDAKTGKV--LWRFDLP 65 (238)
T ss_dssp SEEEEEETTTTEEEEEEECSSSCSSEEETE---EE--ETTEEEEEE----------TTSEEEEEETTTSEE--EEEEECS
T ss_pred CEEEEEECCCCCEEEEEECCCCCCCccceE---EE--eCCEEEEEc----------CCCEEEEEECCCCCE--EEEeecc
Confidence 5688899999999999998652 2222111 11 134455554 457999998876654 4555555
Q ss_pred CceeEe-ccccCeEEEEEC-CEEEEEEeeeccCcccccc-ccccc--ccceEEEEEEEeCCEEEEEeccccEEEEEEecc
Q 001387 823 GAVYSL-NAFNGKLLAAIN-QKIQLYKWMLRDDGTRELQ-SECGH--HGHILALYVQTRGDFIVVGDLMKSISLLIYKHE 897 (1088)
Q Consensus 823 g~v~ai-~~~~g~Lv~~~g-~~l~v~~~~~~~~~~~~L~-~~~~~--~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~ 897 (1088)
+++... ...++.++++.. +.++ .++. .+|+.... ..... ..........+.++++++++....+ +.++.+
T Consensus 66 ~~~~~~~~~~~~~v~v~~~~~~l~--~~d~-~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l--~~~d~~ 140 (238)
T PF13360_consen 66 GPISGAPVVDGGRVYVGTSDGSLY--ALDA-KTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKL--VALDPK 140 (238)
T ss_dssp SCGGSGEEEETTEEEEEETTSEEE--EEET-TTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEE--EEEETT
T ss_pred ccccceeeecccccccccceeeeE--eccc-CCcceeeeeccccccccccccccCceEecCEEEEEeccCcE--EEEecC
Confidence 554433 334678877764 4454 4432 34544433 11110 0111223344458888888885555 456766
Q ss_pred CCeEEEEeccCCCce---------eEEEEEeeCceEEEEccCCcEEEE
Q 001387 898 EGAIEERARDYNANW---------MSAVEILDDDIYLGAENNFNLFTV 936 (1088)
Q Consensus 898 ~~~l~~~~~D~~~~~---------v~~~~~l~~~~~l~~D~~gnl~~l 936 (1088)
.+++.--..-..+.. ..+.-.+.++.+++++.+|.+..+
T Consensus 141 tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~ 188 (238)
T PF13360_consen 141 TGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV 188 (238)
T ss_dssp TTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE
T ss_pred CCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE
Confidence 666532221122111 122333445677788888875544
No 109
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=87.72 E-value=4.8 Score=44.49 Aligned_cols=104 Identities=23% Similarity=0.388 Sum_probs=68.9
Q ss_pred EEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEE
Q 001387 705 HIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYY 784 (1088)
Q Consensus 705 ~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i 784 (1088)
..+.+|+++-...+-..++..-+ ..|++. -.++++|..+.++...|.-+.+-.....--+.|.. +..|+
T Consensus 334 ~~~sv~~gg~vtSl~ls~~g~~l-LsssRD---------dtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp-d~~Yv 402 (459)
T KOG0288|consen 334 KTRSVPLGGRVTSLDLSMDGLEL-LSSSRD---------DTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP-DGSYV 402 (459)
T ss_pred eeeEeecCcceeeEeeccCCeEE-eeecCC---------CceeeeecccccEEEEeeccccccccccceeEECC-CCcee
Confidence 45777887766666665554443 333332 36888998888888776543332222222234553 57899
Q ss_pred EEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecC-ceeEec
Q 001387 785 CVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKG-AVYSLN 829 (1088)
Q Consensus 785 ~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g-~v~ai~ 829 (1088)
+.|. +.|+||+|++..+|++.+-+..... +++++.
T Consensus 403 aAGS----------~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~ 438 (459)
T KOG0288|consen 403 AAGS----------ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLS 438 (459)
T ss_pred eecc----------CCCcEEEEEccCceEEEEeccCCCCcceEEEE
Confidence 9886 5699999999999999888777665 677665
No 110
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=87.71 E-value=66 Score=38.04 Aligned_cols=242 Identities=19% Similarity=0.233 Sum_probs=127.2
Q ss_pred ceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecC-CCCcCceeEEeeeecCceEEEEEeCCCcEEEE
Q 001387 530 YEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHL-GGEIIPRSVLLCAFEGISYLLCALGDGHLLNF 608 (1088)
Q Consensus 530 ~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l-~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y 608 (1088)
..++|+++.+ .+..++-+.+ ++.+.+|.....+......+ .......++.+.. +..+++-+..|+.+-.+
T Consensus 160 ~sv~~~~fs~------~g~~l~~~~~-~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~--d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 160 PSVTCVDFSP------DGRALAAASS-DGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSP--DGSYLLSGSDDKTLRIW 230 (456)
T ss_pred CceEEEEEcC------CCCeEEEccC-CCcEEEeecccccchhhccccccccceeeeEECC--CCcEEEEecCCceEEEe
Confidence 4578888865 2456666656 99999998854331001111 1122344554442 33478889999999888
Q ss_pred EEecCCCccccceeeecCcc-ceeEEEEEeCCceEEEEe-cCCceEEEecC-Cc-EEEeecccccceeeeccCCCCCCCe
Q 001387 609 LLNMKTGELTDRKKVSLGTQ-PITLRTFSSKNTTHVFAA-SDRPTVIYSSN-KK-LLYSNVNLKEVSHMCPFNSAAFPDS 684 (1088)
Q Consensus 609 ~~~~~~~~l~~~~~~~lG~~-pv~l~~~~~~~~~~v~~~-~~~p~~i~~~~-~~-~~~~~l~~~~i~~~~~f~~~~~~~~ 684 (1088)
.+. ..+ +..++.. |-. +|.=..|...+ +-++-. .|...-+..-+ +. ....+.+.+.+.+ +.|+. ....
T Consensus 231 d~~-~~~--~~~~~l~-gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~-~~f~~--d~~~ 302 (456)
T KOG0266|consen 231 DLK-DDG--RNLKTLK-GHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISG-LAFSP--DGNL 302 (456)
T ss_pred ecc-CCC--eEEEEec-CCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEE-EEECC--CCCE
Confidence 872 111 1112221 322 23212222222 222222 23332222211 12 1112222223322 22322 1122
Q ss_pred EEEEe-CCeEEEEEEcCCCCeEEEEEeCCCcc---CeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEE
Q 001387 685 LAIAK-EGELTIGTIDDIQKLHIRSIPLGEHP---RRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTY 760 (1088)
Q Consensus 685 l~~~~-~~~l~i~~l~~~~~~~~~~i~l~~tp---~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~ 760 (1088)
++..+ ++.+++-.+........+.+.-.+.+ +.+.++|+.+.+++++.+ ..+++.|....+.+..+
T Consensus 303 l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d----------~~~~~w~l~~~~~~~~~ 372 (456)
T KOG0266|consen 303 LVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD----------RTLKLWDLRSGKSVGTY 372 (456)
T ss_pred EEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCC----------CeEEEEEccCCcceeee
Confidence 33333 66677777665543334455555556 778889988888877654 47899888877777777
Q ss_pred ECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeC
Q 001387 761 PLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVED 810 (1088)
Q Consensus 761 ~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~ 810 (1088)
.-..++ ..|+..... .....+++.|. .-+.|++|.+..
T Consensus 373 ~~~~~~-~~~~~~~~~-~~~~~~i~sg~----------~d~~v~~~~~~s 410 (456)
T KOG0266|consen 373 TGHSNL-VRCIFSPTL-STGGKLIYSGS----------EDGSVYVWDSSS 410 (456)
T ss_pred cccCCc-ceeEecccc-cCCCCeEEEEe----------CCceEEEEeCCc
Confidence 666665 355544433 23567888776 347889998874
No 111
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=87.28 E-value=52 Score=36.38 Aligned_cols=67 Identities=21% Similarity=0.156 Sum_probs=42.1
Q ss_pred ccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecC-ceEEEEEeCCCcEEEEEEecCCCc
Q 001387 547 SQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEG-ISYLLCALGDGHLLNFLLNMKTGE 616 (1088)
Q Consensus 547 ~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~-~~~L~vgl~~G~l~~y~~~~~~~~ 616 (1088)
+.+++-|++ ||.+++|+...-...... .......++.-...+. ...++.+..|-.+..|.++.....
T Consensus 115 ~~~IltgsY-Dg~~riWd~~Gk~~~~~~--Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~ 182 (423)
T KOG0313|consen 115 SKWILTGSY-DGTSRIWDLKGKSIKTIV--GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK 182 (423)
T ss_pred CceEEEeec-CCeeEEEecCCceEEEEe--cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh
Confidence 789999999 999999998753322111 1112334443333332 234666778889999999876543
No 112
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=87.07 E-value=61 Score=36.91 Aligned_cols=244 Identities=19% Similarity=0.263 Sum_probs=126.8
Q ss_pred CceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCC-CCceEEecCCCCcCceeEEeeeec-CceEEEEEeCCCcEE
Q 001387 529 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD-LNLITKEHLGGEIIPRSVLLCAFE-GISYLLCALGDGHLL 606 (1088)
Q Consensus 529 ~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~-l~~~~~~~l~~~~~p~si~~~~~~-~~~~L~vgl~~G~l~ 606 (1088)
...|+|++-+. .+..++.|.. +|.++||+.+. +.....++-. +.-++ +.+ ...||+-|.-||..+
T Consensus 235 nkdVT~L~Wn~------~G~~LatG~~-~G~~riw~~~G~l~~tl~~Hkg---PI~sl---KWnk~G~yilS~~vD~tti 301 (524)
T KOG0273|consen 235 NKDVTSLDWNN------DGTLLATGSE-DGEARIWNKDGNLISTLGQHKG---PIFSL---KWNKKGTYILSGGVDGTTI 301 (524)
T ss_pred cCCcceEEecC------CCCeEEEeec-CcEEEEEecCchhhhhhhccCC---ceEEE---EEcCCCCEEEeccCCccEE
Confidence 46789999864 3679999999 99999999875 2222122221 11232 232 458999999999999
Q ss_pred EEEEecCCCccccceeeecCccc-eeEEEEEeCCceEEEEecCCc--eEEEe-cC--CcEEEeecccccceeeeccCCCC
Q 001387 607 NFLLNMKTGELTDRKKVSLGTQP-ITLRTFSSKNTTHVFAASDRP--TVIYS-SN--KKLLYSNVNLKEVSHMCPFNSAA 680 (1088)
Q Consensus 607 ~y~~~~~~~~l~~~~~~~lG~~p-v~l~~~~~~~~~~v~~~~~~p--~~i~~-~~--~~~~~~~l~~~~i~~~~~f~~~~ 680 (1088)
.+..... ....+ ..+-..| +.+. . .+ +.-|++++.- ..++. .. +.-.+.. +..++.+ -.|
T Consensus 302 lwd~~~g--~~~q~--f~~~s~~~lDVd-W-~~--~~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~a-lk~---- 367 (524)
T KOG0273|consen 302 LWDAHTG--TVKQQ--FEFHSAPALDVD-W-QS--NDEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNA-LKW---- 367 (524)
T ss_pred EEeccCc--eEEEe--eeeccCCccceE-E-ec--CceEeecCCCceEEEEEecCCCcceeeec-ccCceEE-EEE----
Confidence 8775432 21111 1111222 1110 0 00 1223333222 11221 11 1111111 1122211 111
Q ss_pred CCCe-EEE--EeCCeEEEEEEcCCCC-----------eEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEE
Q 001387 681 FPDS-LAI--AKEGELTIGTIDDIQK-----------LHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFV 746 (1088)
Q Consensus 681 ~~~~-l~~--~~~~~l~i~~l~~~~~-----------~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l 746 (1088)
.|.+ |+. .+++.|+|=++..... +.++-.|.|. +.-.|..+...+.++.. +.|
T Consensus 368 n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~----v~~n~~~~~~l~sas~d---------stV 434 (524)
T KOG0273|consen 368 NPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGP----VTSNPNMNLMLASASFD---------STV 434 (524)
T ss_pred CCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCC----ccCCCcCCceEEEeecC---------CeE
Confidence 1222 333 2378888877665431 2334444432 23345666666655544 789
Q ss_pred EEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCcee
Q 001387 747 RLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVY 826 (1088)
Q Consensus 747 ~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ 826 (1088)
++.|......+..+ ++-.|-|++++. . .+..|++-|. ..|++.+|.+.-++ ++++..-.|.|.
T Consensus 435 ~lwdv~~gv~i~~f-~kH~~pVysvaf---S-~~g~ylAsGs----------~dg~V~iws~~~~~--l~~s~~~~~~If 497 (524)
T KOG0273|consen 435 KLWDVESGVPIHTL-MKHQEPVYSVAF---S-PNGRYLASGS----------LDGCVHIWSTKTGK--LVKSYQGTGGIF 497 (524)
T ss_pred EEEEccCCceeEee-ccCCCceEEEEe---c-CCCcEEEecC----------CCCeeEeccccchh--eeEeecCCCeEE
Confidence 99999888777653 144566666653 3 3467888775 56899999775333 334334445555
Q ss_pred Eec
Q 001387 827 SLN 829 (1088)
Q Consensus 827 ai~ 829 (1088)
.+|
T Consensus 498 el~ 500 (524)
T KOG0273|consen 498 ELC 500 (524)
T ss_pred EEE
Confidence 555
No 113
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.04 E-value=63 Score=37.84 Aligned_cols=170 Identities=15% Similarity=0.135 Sum_probs=79.8
Q ss_pred ceeEEEEEeCCceEEEEecCCceEEEecCCcEEEeecccccceeeeccCCCCCCCeEEEEe-CCeEEEEEEcCCCCeEEE
Q 001387 629 PITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIR 707 (1088)
Q Consensus 629 pv~l~~~~~~~~~~v~~~~~~p~~i~~~~~~~~~~~l~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~ 707 (1088)
|..|.. ...+..|.++|+..|.+|+..+--.-. . +.-..+ .|.. .+.++..+ ++.+.|. .+...-..+
T Consensus 35 p~~ls~--npngr~v~V~g~geY~iyt~~~~r~k~--~-G~g~~~-vw~~---~n~yAv~~~~~~I~I~--kn~~~~~~k 103 (443)
T PF04053_consen 35 PQSLSH--NPNGRFVLVCGDGEYEIYTALAWRNKA--F-GSGLSF-VWSS---RNRYAVLESSSTIKIY--KNFKNEVVK 103 (443)
T ss_dssp -SEEEE---TTSSEEEEEETTEEEEEETTTTEEEE--E-EE-SEE-EE-T---SSEEEEE-TTS-EEEE--ETTEE-TT-
T ss_pred CeeEEE--CCCCCEEEEEcCCEEEEEEccCCcccc--c-CceeEE-EEec---CccEEEEECCCeEEEE--EcCccccce
Confidence 444432 335678888999999999853221100 0 001111 1111 23455554 5666664 222223356
Q ss_pred EEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEE
Q 001387 708 SIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVG 787 (1088)
Q Consensus 708 ~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VG 787 (1088)
+++++.++.+|.+ ..++++.+. ..|.|+|-.+.+.+.+++..+ +..+ .| ++..+++++-
T Consensus 104 ~i~~~~~~~~If~---G~LL~~~~~-----------~~i~~yDw~~~~~i~~i~v~~---vk~V-~W---s~~g~~val~ 162 (443)
T PF04053_consen 104 SIKLPFSVEKIFG---GNLLGVKSS-----------DFICFYDWETGKLIRRIDVSA---VKYV-IW---SDDGELVALV 162 (443)
T ss_dssp ----SS-EEEEE----SSSEEEEET-----------TEEEEE-TTT--EEEEESS-E----EEE-EE----TTSSEEEEE
T ss_pred EEcCCcccceEEc---CcEEEEECC-----------CCEEEEEhhHcceeeEEecCC---CcEE-EE---ECCCCEEEEE
Confidence 8888888888887 455555432 369999999999999998774 2222 23 2346777777
Q ss_pred eeeeCCCCCCCcceEEEEEEEeCC------------eEEEEEEEEecCceeEeccccCeEEEEECCEE
Q 001387 788 TAYVLPEENEPTKGRILVFIVEDG------------KLQLIAEKETKGAVYSLNAFNGKLLAAINQKI 843 (1088)
Q Consensus 788 T~~~~~~e~~~~~Gri~v~~i~~~------------kl~~~~~~~~~g~v~ai~~~~g~Lv~~~g~~l 843 (1088)
|.. .+++++.... .++.+++ +...|.+.+=.++-++....+.|
T Consensus 163 t~~-----------~i~il~~~~~~~~~~~~~g~e~~f~~~~E--~~~~IkSg~W~~d~fiYtT~~~l 217 (443)
T PF04053_consen 163 TKD-----------SIYILKYNLEAVAAIPEEGVEDAFELIHE--ISERIKSGCWVEDCFIYTTSNHL 217 (443)
T ss_dssp -S------------SEEEEEE-HHHHHHBTTTB-GGGEEEEEE--E-S--SEEEEETTEEEEE-TTEE
T ss_pred eCC-----------eEEEEEecchhcccccccCchhceEEEEE--ecceeEEEEEEcCEEEEEcCCeE
Confidence 632 4667766533 5666654 34455555544444555555544
No 114
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=86.82 E-value=13 Score=41.20 Aligned_cols=250 Identities=16% Similarity=0.190 Sum_probs=130.1
Q ss_pred ceEEEEEeCCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEecCCceEEEecCCc-EEEeecccccce
Q 001387 593 ISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKK-LLYSNVNLKEVS 671 (1088)
Q Consensus 593 ~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~i~~~~~~-~~~~~l~~~~i~ 671 (1088)
.-.|++|+.+|.+..++-.. +.+.-..+.=..||+- +-...+..|++..+++. +.|...+...+.
T Consensus 108 GRRLltgs~SGEFtLWNg~~----fnFEtilQaHDs~Vr~----------m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk 173 (464)
T KOG0284|consen 108 GRRLLTGSQSGEFTLWNGTS----FNFETILQAHDSPVRT----------MKWSHNGTWMISGDKGGMIKYWQPNMNNVK 173 (464)
T ss_pred CceeEeecccccEEEecCce----eeHHHHhhhhccccee----------EEEccCCCEEEEcCCCceEEecccchhhhH
Confidence 36799999999988766321 1111111222345432 22334555667766544 556555443332
Q ss_pred eeeccCCCC-----C--CC--eEEEEeCCeEEEEEEcCCCCeEEEEEe-CCCccCeEEEecCCCEEEEEEeecCCCcCcc
Q 001387 672 HMCPFNSAA-----F--PD--SLAIAKEGELTIGTIDDIQKLHIRSIP-LGEHPRRICHQEQSRTFAICSLKNQSCAEES 741 (1088)
Q Consensus 672 ~~~~f~~~~-----~--~~--~l~~~~~~~l~i~~l~~~~~~~~~~i~-l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~ 741 (1088)
.+-.-+.++ + .| ++-+.+++.++|=..-... ..+.+. =|..|+.+..||....++.+.-++
T Consensus 174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k--ee~vL~GHgwdVksvdWHP~kgLiasgskDn------- 244 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK--EERVLRGHGWDVKSVDWHPTKGLIASGSKDN------- 244 (464)
T ss_pred HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCc--hhheeccCCCCcceeccCCccceeEEccCCc-------
Confidence 221111111 1 12 2334456777764433211 122221 145788899999988777765432
Q ss_pred eeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEE-EEE
Q 001387 742 EMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIA-EKE 820 (1088)
Q Consensus 742 ~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~-~~~ 820 (1088)
-|+|.||++.+.+.+.- ++=.++..+.|..++ ++++-|.. |. .+.+|+|. .++.+. ...
T Consensus 245 ---lVKlWDprSg~cl~tlh----~HKntVl~~~f~~n~-N~Llt~sk------D~----~~kv~DiR--~mkEl~~~r~ 304 (464)
T KOG0284|consen 245 ---LVKLWDPRSGSCLATLH----GHKNTVLAVKFNPNG-NWLLTGSK------DQ----SCKVFDIR--TMKELFTYRG 304 (464)
T ss_pred ---eeEeecCCCcchhhhhh----hccceEEEEEEcCCC-CeeEEccC------Cc----eEEEEehh--HhHHHHHhhc
Confidence 79999999998876532 122455556676544 88886642 21 56677775 233222 223
Q ss_pred ecCceeEe--ccccCeEEEEEC--CEEEEEEeeeccCcccccccc-cccccceEEEEEEE--eCCEEEEEeccccEEE
Q 001387 821 TKGAVYSL--NAFNGKLLAAIN--QKIQLYKWMLRDDGTRELQSE-CGHHGHILALYVQT--RGDFIVVGDLMKSISL 891 (1088)
Q Consensus 821 ~~g~v~ai--~~~~g~Lv~~~g--~~l~v~~~~~~~~~~~~L~~~-~~~~~~~~~~~l~~--~~~~I~vgD~~~Sv~~ 891 (1088)
.+.-|+++ .+++..|+...| ..|+.+.+.. .+.+... -.++. .+-+|.. .|-.+.-|+--+.+-|
T Consensus 305 Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~----~~p~~~i~~AHd~--~iwsl~~hPlGhil~tgsnd~t~rf 376 (464)
T KOG0284|consen 305 HKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGL----EEPLGEIPPAHDG--EIWSLAYHPLGHILATGSNDRTVRF 376 (464)
T ss_pred chhhheeeccccccccceeeccCCCceEEEeccc----cccccCCCccccc--ceeeeeccccceeEeecCCCcceee
Confidence 55566677 566777776655 4566555531 1112111 11222 2334443 4666666777777654
No 115
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=86.31 E-value=53 Score=35.45 Aligned_cols=52 Identities=25% Similarity=0.333 Sum_probs=35.5
Q ss_pred CeEEECCCCCEEEEEecCCeEEEEe--CCCCCcccccee-cccCC--ceeEEEEeec
Q 001387 119 QIGIIDPDCRLIGLHLYDGLFKVIP--FDNKGQLKEAFN-IRLEE--LQVLDIKFLY 170 (1088)
Q Consensus 119 ~~l~vdp~~r~~~~~~~~~~l~i~p--~~~~~~~~~~~~-i~l~~--~~i~d~~fl~ 170 (1088)
...+|.|.||+++.+.+.--++|+. |...+.+++... ..|.. ..|..+||-+
T Consensus 232 ~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn 288 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN 288 (420)
T ss_pred cceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC
Confidence 5779999999999999988888875 444555554321 12333 3578888853
No 116
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=85.36 E-value=78 Score=36.57 Aligned_cols=126 Identities=14% Similarity=0.174 Sum_probs=71.8
Q ss_pred CcEEEEecCCcceeeeeeCCCCCcEEEEEECCCEEEEEECCCeEEEEEEcCcEEEEEeeccCCc-eeEEEEeCCCCCCCC
Q 001387 467 GSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEY-EISCLDINPIGENPS 545 (1088)
Q Consensus 467 ~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~-~is~l~~~~~~~~~~ 545 (1088)
..+..++..+++ ..|..+.+.. ....+.++.+++...++.+..++..+|+..=.. ..+.. ..++..+
T Consensus 266 g~l~ald~~tG~--~~W~~~~~~~-~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~-~~~~~~~~~sp~v-------- 333 (394)
T PRK11138 266 GNLVALDLRSGQ--IVWKREYGSV-NDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQ-SDLLHRLLTAPVL-------- 333 (394)
T ss_pred CeEEEEECCCCC--EEEeecCCCc-cCcEEECCEEEEEcCCCeEEEEECCCCcEEEcc-cccCCCcccCCEE--------
Confidence 456666666543 3476544321 122345666666666788888877665432111 11111 1111112
Q ss_pred CccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEE
Q 001387 546 YSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFL 609 (1088)
Q Consensus 546 ~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~ 609 (1088)
....+.++.- +|.+..++..+-+.++...+.......+.++. ...|++++.+|.|+.++
T Consensus 334 ~~g~l~v~~~-~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~----~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 334 YNGYLVVGDS-EGYLHWINREDGRFVAQQKVDSSGFLSEPVVA----DDKLLIQARDGTVYAIT 392 (394)
T ss_pred ECCEEEEEeC-CCEEEEEECCCCCEEEEEEcCCCcceeCCEEE----CCEEEEEeCCceEEEEe
Confidence 1456777766 89999999888788776665422222232222 24799999999998765
No 117
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=85.25 E-value=55 Score=34.73 Aligned_cols=135 Identities=17% Similarity=0.198 Sum_probs=73.1
Q ss_pred cEEEEecCCcceeeeeeCCCCCcEEEEEEC--CCEEEEEECCCeEEEEEEcCc-EEEEEeeccC-CceeEEEEeCCCCCC
Q 001387 468 SVRLVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLATGGGHLVYLEIGDG-ILTEVKHAQL-EYEISCLDINPIGEN 543 (1088)
Q Consensus 468 ~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~~~~~l~~~~~~~~-~l~~~~~~~l-~~~is~l~~~~~~~~ 543 (1088)
.+|+-|..+++....... ...-+...+++ +.+++-...++.+.+.....+ ++. +. -.. ...|+|+.+.|-.
T Consensus 86 ~lrlWDl~~g~~t~~f~G-H~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t-~~-~~~~~~WVscvrfsP~~-- 160 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVG-HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYT-IH-EDSHREWVSCVRFSPNE-- 160 (315)
T ss_pred eEEEEEecCCcEEEEEEe-cCCceEEEEecCCCceeecCCCcceeeeeeecccEEEE-Ee-cCCCcCcEEEEEEcCCC--
Confidence 456666665444443322 22346666655 446655545566655443221 121 11 122 5679999998733
Q ss_pred CCCccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecC
Q 001387 544 PSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMK 613 (1088)
Q Consensus 544 ~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~ 613 (1088)
.+.+++=+.| |+++.+|++.+++.... .+........+.+.+ +...+.-|-+||.++.+.++..
T Consensus 161 --~~p~Ivs~s~-DktvKvWnl~~~~l~~~-~~gh~~~v~t~~vSp--DGslcasGgkdg~~~LwdL~~~ 224 (315)
T KOG0279|consen 161 --SNPIIVSASW-DKTVKVWNLRNCQLRTT-FIGHSGYVNTVTVSP--DGSLCASGGKDGEAMLWDLNEG 224 (315)
T ss_pred --CCcEEEEccC-CceEEEEccCCcchhhc-cccccccEEEEEECC--CCCEEecCCCCceEEEEEccCC
Confidence 2556777778 99999999998765321 111111112222221 2233444778888888777653
No 118
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=84.97 E-value=1.2e+02 Score=38.22 Aligned_cols=369 Identities=13% Similarity=0.111 Sum_probs=172.6
Q ss_pred eeeeecCCC-eEEEEecCcEEEEecCCcceeeeeeCCCCCcEEEEEEC--CCEEEEEECCCeEEEEEEcC--cEEEEEee
Q 001387 451 LFCHDAIYN-QLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLATGGGHLVYLEIGD--GILTEVKH 525 (1088)
Q Consensus 451 i~~~~~~~~-~ivQVt~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~~~~~l~~~~~~~--~~l~~~~~ 525 (1088)
+++|...+. .++-..|+.+.+..... .... -.++|....+. ..++++++.+|.+.+|.++. |.+.+.++
T Consensus 551 ~aVG~Ws~~~~~l~~~pd~~~~~~~~l--~~~~----iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk 624 (1096)
T KOG1897|consen 551 LAVGLWSDISMILTFLPDLILITHEQL--SGEI----IPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKK 624 (1096)
T ss_pred EEEEeecceEEEEEECCCcceeeeecc--CCCc----cchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccc
Confidence 445555332 44555566555543221 0110 12467777754 46889999999999988876 56666666
Q ss_pred ccCCceeEEE-EeCCCCCCCCCccEEEEEEecCCEEEEEECCC--------CCce-EEecCCCCcCceeEEeeeecCceE
Q 001387 526 AQLEYEISCL-DINPIGENPSYSQIAAVGMWTDISVRIFSLPD--------LNLI-TKEHLGGEIIPRSVLLCAFEGISY 595 (1088)
Q Consensus 526 ~~l~~~is~l-~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~--------l~~~-~~~~l~~~~~p~si~~~~~~~~~~ 595 (1088)
..+...+..+ .+.. .+...++++- |.--.+|+-.+ ++.+ ...++..+..|.+++.+
T Consensus 625 ~~lGt~P~~Lr~f~s------k~~t~vfa~s-drP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~------- 690 (1096)
T KOG1897|consen 625 VTLGTQPISLRTFSS------KSRTAVFALS-DRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASA------- 690 (1096)
T ss_pred cccCCCCcEEEEEee------CCceEEEEeC-CCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEe-------
Confidence 6776655555 3322 1222233333 44445555432 1111 11223333455555444
Q ss_pred EEEEeCCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEecCCceEEEecCCcEEEeecccccceeeec
Q 001387 596 LLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCP 675 (1088)
Q Consensus 596 L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~i~~~~~~~~~~~l~~~~i~~~~~ 675 (1088)
.+|.|....+|+. .++.. +++.+|..|.++.. + .....+++++.|- ..... .
T Consensus 691 -----~~~~l~i~tid~i-qkl~i-rtvpl~~~prrI~~-q-~~sl~~~v~s~r~--------e~~~~-----------~ 742 (1096)
T KOG1897|consen 691 -----NGGALTIGTIDEI-QKLHI-RTVPLGESPRRICY-Q-ESSLTFGVLSNRI--------ESSAE-----------Y 742 (1096)
T ss_pred -----cCCceEEEEecch-hhcce-eeecCCCChhheEe-c-ccceEEEEEeccc--------ccchh-----------h
Confidence 2455566666654 23433 34788888876542 1 1122233333321 11000 0
Q ss_pred cCCCCCCCeEEEEeCCeEEEEEEcCCCCeEEEEEeCCCccCeEE---EecC-CCEEEEEEeecCCCcCcceeEEEEEE--
Q 001387 676 FNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRIC---HQEQ-SRTFAICSLKNQSCAEESEMHFVRLL-- 749 (1088)
Q Consensus 676 f~~~~~~~~l~~~~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~---y~~~-~~~~~v~~~~~~~~~~~~~~s~l~li-- 749 (1088)
+..+..-.++...+++++..........+ ++..+++ ++.+ ...|+|++.-..|+..+-..+.|-++
T Consensus 743 ~~ee~~~s~l~vlD~nTf~vl~~hef~~~--------E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~ 814 (1096)
T KOG1897|consen 743 YGEEYEVSFLRVLDQNTFEVLSSHEFERN--------ETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEF 814 (1096)
T ss_pred cCCcceEEEEEEecCCceeEEeecccccc--------ceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEE
Confidence 11111112344556666666555544332 2222222 3344 34556777665554444445555444
Q ss_pred -eCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC-eEEEEEEEEecCceeE
Q 001387 750 -DDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG-KLQLIAEKETKGAVYS 827 (1088)
Q Consensus 750 -d~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~-kl~~~~~~~~~g~v~a 827 (1088)
+.++.+.++..+.+- .++++ +.| +..+++|-+ -.+-+|+.... .|...+.....-.+..
T Consensus 815 ~e~~~L~~v~e~~v~G--av~aL--~~f----ngkllA~In-----------~~vrLye~t~~~eLr~e~~~~~~~~aL~ 875 (1096)
T KOG1897|consen 815 EELNSLELVAETVVKG--AVYAL--VEF----NGKLLAGIN-----------QSVRLYEWTTERELRIECNISNPIIALD 875 (1096)
T ss_pred ecCCceeeeeeeeecc--ceeeh--hhh----CCeEEEecC-----------cEEEEEEccccceehhhhcccCCeEEEE
Confidence 223344444333322 12222 222 233444442 14455666543 3444443333333344
Q ss_pred eccccCeEEEEEC-CEEEEEEeeeccCcccccccccccccceEEEEEEE-eCCEEEEEeccccEEEEEEecc
Q 001387 828 LNAFNGKLLAAIN-QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQT-RGDFIVVGDLMKSISLLIYKHE 897 (1088)
Q Consensus 828 i~~~~g~Lv~~~g-~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~-~~~~I~vgD~~~Sv~~~~~~~~ 897 (1088)
+...++.+++|-= ..+.+..+.. ++|. +.-+|....+-..++... .++..+.+|..--+.+++++.+
T Consensus 876 l~v~gdeI~VgDlm~Sitll~y~~-~eg~--f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~~ 944 (1096)
T KOG1897|consen 876 LQVKGDEIAVGDLMRSITLLQYKG-DEGN--FEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDSD 944 (1096)
T ss_pred EEecCcEEEEeeccceEEEEEEec-cCCc--eEEeehhhCccceeeEEEecCceEEeecccccEEEEEecCC
Confidence 4555778877643 3455555532 2221 332332222222333333 3556677788888888888753
No 119
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=84.41 E-value=91 Score=36.55 Aligned_cols=252 Identities=17% Similarity=0.193 Sum_probs=127.0
Q ss_pred CCEEEEEECCCeEEEE-EEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecC
Q 001387 498 ASQVLLATGGGHLVYL-EIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHL 576 (1088)
Q Consensus 498 ~~~lvv~~~~~~l~~~-~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l 576 (1088)
.+.+.|++ +.-+|+ ....+.+.++..+. +..|+++...+ ...+|+||+- +|.+.||+..+.+.+..-..
T Consensus 188 ~n~laVal--g~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~------~G~~LavG~~-~g~v~iwD~~~~k~~~~~~~ 257 (484)
T KOG0305|consen 188 ANVLAVAL--GQSVYLWSASSGSVTELCSFG-EELVTSVKWSP------DGSHLAVGTS-DGTVQIWDVKEQKKTRTLRG 257 (484)
T ss_pred CCeEEEEe--cceEEEEecCCCceEEeEecC-CCceEEEEECC------CCCEEEEeec-CCeEEEEehhhccccccccC
Confidence 45666666 333443 22335555554444 77899998754 3689999999 99999999865443221111
Q ss_pred CCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccc---cceeeecCcc-ceeEEEEEeCC-ceEEEEecCCce
Q 001387 577 GGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELT---DRKKVSLGTQ-PITLRTFSSKN-TTHVFAASDRPT 651 (1088)
Q Consensus 577 ~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~---~~~~~~lG~~-pv~l~~~~~~~-~~~v~~~~~~p~ 651 (1088)
. ..++-.++ ... ...+..|.++|.++.+.+........ ..+....|-+ ......+..+| .+.+++.-.
T Consensus 258 ~--h~~rvg~l-aW~-~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~--- 330 (484)
T KOG0305|consen 258 S--HASRVGSL-AWN-SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDG--- 330 (484)
T ss_pred C--cCceeEEE-ecc-CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccC---
Confidence 0 12221221 222 46688899999999998864321111 0000111100 00001111111 223333211
Q ss_pred EEEecCCcEEEeeccc-ccceeeeccCCCCCCCeEEEEe----CCeEEEEEEcCCCCeEEEEEeCCCccCeEEEecCCCE
Q 001387 652 VIYSSNKKLLYSNVNL-KEVSHMCPFNSAAFPDSLAIAK----EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRT 726 (1088)
Q Consensus 652 ~i~~~~~~~~~~~l~~-~~i~~~~~f~~~~~~~~l~~~~----~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~ 726 (1088)
....+.+.+..... --+.+.||+.. +++.+- +..++|-... ..-.++.+..+..+..+++++..+-
T Consensus 331 --~~~~p~~~~~~H~aAVKA~awcP~q~-----~lLAsGGGs~D~~i~fwn~~--~g~~i~~vdtgsQVcsL~Wsk~~kE 401 (484)
T KOG0305|consen 331 --LSPEPKFTFTEHTAAVKALAWCPWQS-----GLLATGGGSADRCIKFWNTN--TGARIDSVDTGSQVCSLIWSKKYKE 401 (484)
T ss_pred --CCccccEEEeccceeeeEeeeCCCcc-----CceEEcCCCcccEEEEEEcC--CCcEecccccCCceeeEEEcCCCCE
Confidence 01123333433221 01234556643 444332 3344544443 4567888888999999999999887
Q ss_pred EEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCC-CceEeEEEEEEEcCCCceEEEEEee
Q 001387 727 FAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDT-FEYGCSILSCSFSDDSNVYYCVGTA 789 (1088)
Q Consensus 727 ~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~-~E~v~si~~~~~~~~~~~~i~VGT~ 789 (1088)
++..-... ...|.+.+-.+++.+. ++.. ..+++.+.. . ...+++++|.+
T Consensus 402 i~sthG~s--------~n~i~lw~~ps~~~~~--~l~gH~~RVl~la~---S-Pdg~~i~t~a~ 451 (484)
T KOG0305|consen 402 LLSTHGYS--------ENQITLWKYPSMKLVA--ELLGHTSRVLYLAL---S-PDGETIVTGAA 451 (484)
T ss_pred EEEecCCC--------CCcEEEEeccccceee--eecCCcceeEEEEE---C-CCCCEEEEecc
Confidence 76543221 1246666554544332 2222 234444432 2 23567888875
No 120
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=84.02 E-value=15 Score=39.08 Aligned_cols=178 Identities=17% Similarity=0.238 Sum_probs=92.6
Q ss_pred CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeC
Q 001387 713 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVL 792 (1088)
Q Consensus 713 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~ 792 (1088)
+..|.|.+||....++|++.++ .++|+|-.|++..-+-. ++..+--++..+.+... ...++-|.
T Consensus 217 ~~vrsiSfHPsGefllvgTdHp----------~~rlYdv~T~Qcfvsan-Pd~qht~ai~~V~Ys~t-~~lYvTaS---- 280 (430)
T KOG0640|consen 217 EPVRSISFHPSGEFLLVGTDHP----------TLRLYDVNTYQCFVSAN-PDDQHTGAITQVRYSST-GSLYVTAS---- 280 (430)
T ss_pred ceeeeEeecCCCceEEEecCCC----------ceeEEeccceeEeeecC-cccccccceeEEEecCC-ccEEEEec----
Confidence 3456788999999988888664 78999998887654433 33333344555555543 33444332
Q ss_pred CCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc--cCeEEEEECCEEEEEEeeeccCcccccccc--ccccc-c
Q 001387 793 PEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF--NGKLLAAINQKIQLYKWMLRDDGTRELQSE--CGHHG-H 867 (1088)
Q Consensus 793 ~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~--~g~Lv~~~g~~l~v~~~~~~~~~~~~L~~~--~~~~~-~ 867 (1088)
.-|.|.+|+=..++.---....+.|+--+-+.| +|+.+.+.|..-.++=|+... | +-|+.- +.... .
T Consensus 281 ------kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t-~-R~l~~YtGAg~tgrq 352 (430)
T KOG0640|consen 281 ------KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIST-G-RMLKEYTGAGTTGRQ 352 (430)
T ss_pred ------cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecC-C-ceEEEEecCCcccch
Confidence 558888886543332222223344443333444 677777777544444443221 1 111100 00000 0
Q ss_pred eEEEE--EEEeCCEEEEEeccccEEEEEEecc---CCeEEEEeccCCCceeEE
Q 001387 868 ILALY--VQTRGDFIVVGDLMKSISLLIYKHE---EGAIEERARDYNANWMSA 915 (1088)
Q Consensus 868 ~~~~~--l~~~~~~I~vgD~~~Sv~~~~~~~~---~~~l~~~~~D~~~~~v~~ 915 (1088)
...+. ..-..++++.-|-. |.++..|+.. ...|..++.....||+..
T Consensus 353 ~~rtqAvFNhtEdyVl~pDEa-s~slcsWdaRtadr~~l~slgHn~a~R~i~H 404 (430)
T KOG0640|consen 353 KHRTQAVFNHTEDYVLFPDEA-SNSLCSWDARTADRVALLSLGHNGAVRWIVH 404 (430)
T ss_pred hhhhhhhhcCccceEEccccc-cCceeeccccchhhhhhcccCCCCCceEEEe
Confidence 00011 11235677776653 3345667652 234555566667777654
No 121
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=83.79 E-value=3.1 Score=31.42 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=31.7
Q ss_pred EEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECC
Q 001387 521 TEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLP 566 (1088)
Q Consensus 521 ~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~ 566 (1088)
..+....+..+|++++.+| .-+.+++|+. +|.+.+|.+.
T Consensus 3 ~~~~~k~l~~~v~~~~w~P------~mdLiA~~t~-~g~v~v~Rl~ 41 (47)
T PF12894_consen 3 RQLGEKNLPSRVSCMSWCP------TMDLIALGTE-DGEVLVYRLN 41 (47)
T ss_pred ceecccCCCCcEEEEEECC------CCCEEEEEEC-CCeEEEEECC
Confidence 3455567788899999987 3679999998 9999999983
No 122
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=82.40 E-value=51 Score=35.64 Aligned_cols=223 Identities=20% Similarity=0.192 Sum_probs=115.3
Q ss_pred EEeCCeEEEEEEcCCC------------CeEEEEEeCCCccCe-EEE------ecCCCEEEEEEeecCCCcCcceeEEEE
Q 001387 687 IAKEGELTIGTIDDIQ------------KLHIRSIPLGEHPRR-ICH------QEQSRTFAICSLKNQSCAEESEMHFVR 747 (1088)
Q Consensus 687 ~~~~~~l~i~~l~~~~------------~~~~~~i~l~~tp~~-i~y------~~~~~~~~v~~~~~~~~~~~~~~s~l~ 747 (1088)
.+.++.|.+-+++... .-..-+.+-|+|.-- .-| .|+++++++..-+ .-|+
T Consensus 67 ~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~----------~PIh 136 (406)
T KOG2919|consen 67 LSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD----------QPIH 136 (406)
T ss_pred ecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc----------Ccee
Confidence 3457888888887641 112334455555422 223 4666666554433 2589
Q ss_pred EEeCCCceEEEEEE-CCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeC--CeEEEE---E--EE
Q 001387 748 LLDDQTFEFISTYP-LDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVED--GKLQLI---A--EK 819 (1088)
Q Consensus 748 lid~~t~~~i~~~~-~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~--~kl~~~---~--~~ 819 (1088)
++|..|++.-.+|. .+.-++++...++.|..++...+ .|- +-.|.+|++.+ ++.... . +.
T Consensus 137 ~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlf-aGy-----------krcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 137 LWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF-AGY-----------KRCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred eeeccccccccchhhhhhHHhhhhheeEEecCCCCeEe-ecc-----------cceEEEeeccCCCCCCcchhhhhcccc
Confidence 99999988887775 34456667777788887655444 342 23678888852 222211 1 23
Q ss_pred EecCceeEec--cccCe-EE-EEECCEEEEEEeeeccCcccccccccccccceEEEEEEEe--CCEEEEEeccccEEEEE
Q 001387 820 ETKGAVYSLN--AFNGK-LL-AAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTR--GDFIVVGDLMKSISLLI 893 (1088)
Q Consensus 820 ~~~g~v~ai~--~~~g~-Lv-~~~g~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~--~~~I~vgD~~~Sv~~~~ 893 (1088)
..+|.+.+++ +.+.. +. -+.|+.+-+|.++ +..-|.-.-.... -+++|... ||++++| ++++-.++.
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~----~~~pl~llggh~g--GvThL~~~edGn~lfsG-aRk~dkIl~ 277 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD----GRRPLQLLGGHGG--GVTHLQWCEDGNKLFSG-ARKDDKILC 277 (406)
T ss_pred cccceeeeeeccCCCCcceeeecccceeeeEecC----CCCceeeecccCC--CeeeEEeccCcCeeccc-ccCCCeEEE
Confidence 3455544443 33443 33 3567889999874 2111111111111 24555543 5554444 334444444
Q ss_pred EeccC-----CeEEEEeccCCCceeEEEEEeeCceEE-EEccCCcEEEEeeCC
Q 001387 894 YKHEE-----GAIEERARDYNANWMSAVEILDDDIYL-GAENNFNLFTVRKNS 940 (1088)
Q Consensus 894 ~~~~~-----~~l~~~~~D~~~~~v~~~~~l~~~~~l-~~D~~gnl~~l~~~~ 940 (1088)
|+... .+|...-.|.+.|-....+ ..+.+| .+|.+|-+.+++...
T Consensus 278 WDiR~~~~pv~~L~rhv~~TNQRI~FDld--~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 278 WDIRYSRDPVYALERHVGDTNQRILFDLD--PKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred EeehhccchhhhhhhhccCccceEEEecC--CCCceeeccCCCccEEEEecCC
Confidence 44321 1222222334554322211 123454 577899999988653
No 123
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=82.35 E-value=28 Score=31.68 Aligned_cols=66 Identities=23% Similarity=0.272 Sum_probs=49.4
Q ss_pred EeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEecccc-CeEEE-EECCEEEE
Q 001387 768 GCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFN-GKLLA-AINQKIQL 845 (1088)
Q Consensus 768 v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~-g~Lv~-~~g~~l~v 845 (1088)
+.+|+.+-+..++++-|+|||.- .-|.+|+ .=+++++....+.|++++.+. +++.+ -.+.+|-+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D----------~~IRvf~----~~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGv 67 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDD----------FEIRVFK----GDEIVAEITETDKVTSLCSLGGGRFAYALANGTVGV 67 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCC----------cEEEEEe----CCcEEEEEecccceEEEEEcCCCEEEEEecCCEEEE
Confidence 57888888888888999999842 3556663 236788888899999999995 45544 45678889
Q ss_pred EE
Q 001387 846 YK 847 (1088)
Q Consensus 846 ~~ 847 (1088)
|+
T Consensus 68 Y~ 69 (111)
T PF14783_consen 68 YD 69 (111)
T ss_pred Ee
Confidence 87
No 124
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.16 E-value=1.5e+02 Score=37.52 Aligned_cols=224 Identities=11% Similarity=0.114 Sum_probs=132.8
Q ss_pred ccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEEC--CCCceEeEEEEEEEcCCCceEEEEEeeee
Q 001387 714 HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPL--DTFEYGCSILSCSFSDDSNVYYCVGTAYV 791 (1088)
Q Consensus 714 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~--~~~E~v~si~~~~~~~~~~~~i~VGT~~~ 791 (1088)
.|+.+.+||-....+++-. +..+++.|-...+.+..|.. .+.-.|+.++.+ ......++++|+
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~----------r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~li--Ne~D~aLlLtas--- 1130 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADD----------RERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELI--NEQDDALLLTAS--- 1130 (1387)
T ss_pred CCceeeecCCCceeEEcCC----------cceEEEEecccCceeccccCCCCCCCccceeeee--cccchhheeeec---
Confidence 5888889999888877732 35688888766677776653 345667777654 333478888887
Q ss_pred CCCCCCCcceEEEEEEEe-C--CeEEEEEEEE----------ecCceeEeccccCeEEEEECCEEEEEEeeeccCccccc
Q 001387 792 LPEENEPTKGRILVFIVE-D--GKLQLIAEKE----------TKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTREL 858 (1088)
Q Consensus 792 ~~~e~~~~~Gri~v~~i~-~--~kl~~~~~~~----------~~g~v~ai~~~~g~Lv~~~g~~l~v~~~~~~~~~~~~L 858 (1088)
+.|-|.+|+=- + +|-|++.... -.|.|+.=.+-.|+|+++-+ .-.|.-|+.. .++..
T Consensus 1131 -------~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~--~E~~~ 1200 (1387)
T KOG1517|consen 1131 -------SDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD-VRSIRIWDAH--KEQVV 1200 (1387)
T ss_pred -------cCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC-eeEEEEEecc--cceeE
Confidence 45788887543 2 5677776532 12355555566788877755 2233345321 11112
Q ss_pred ccccccccceEEEEEEE---eCCEEEEEeccccEEEEEEec-cCCeEEEEeccCCCc-eeEEEEEeeC--ceEEEEccCC
Q 001387 859 QSECGHHGHILALYVQT---RGDFIVVGDLMKSISLLIYKH-EEGAIEERARDYNAN-WMSAVEILDD--DIYLGAENNF 931 (1088)
Q Consensus 859 ~~~~~~~~~~~~~~l~~---~~~~I~vgD~~~Sv~~~~~~~-~~~~l~~~~~D~~~~-~v~~~~~l~~--~~~l~~D~~g 931 (1088)
... -+.+...+++++. .||.|++|=.-.|+-++.-+. .++.++..-|..... .+..+.+-.. +.++.+-.+|
T Consensus 1201 ~di-P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G 1279 (1387)
T KOG1517|consen 1201 ADI-PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDG 1279 (1387)
T ss_pred eec-ccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCC
Confidence 111 1122334555543 479999999999988764443 234555555443322 1555555443 3467777899
Q ss_pred cEEEEeeCCCCCCcccccceeEEEEEEcCCccceEE
Q 001387 932 NLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFR 967 (1088)
Q Consensus 932 nl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~ 967 (1088)
.+.+++.--.. ...-+....+..-|+-.|+|.
T Consensus 1280 ~I~~~DlR~~~----~e~~~~iv~~~~yGs~lTal~ 1311 (1387)
T KOG1517|consen 1280 DIQLLDLRMSS----KETFLTIVAHWEYGSALTALT 1311 (1387)
T ss_pred eEEEEecccCc----ccccceeeeccccCccceeee
Confidence 99998865321 112455566666677666664
No 125
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=82.07 E-value=42 Score=36.84 Aligned_cols=70 Identities=19% Similarity=0.272 Sum_probs=42.2
Q ss_pred ceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCc--e-EEecCCCCcCceeEEeeeecCceEEEEEeCCCcEE
Q 001387 530 YEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNL--I-TKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLL 606 (1088)
Q Consensus 530 ~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~--~-~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~ 606 (1088)
+-|..++++|. +.-++-|.+ |.+|+||...+..- + ++..+. +-+++.--.+..|++.|..||.+-
T Consensus 273 sAV~dVdfspt------G~Efvsgsy-DksIRIf~~~~~~SRdiYhtkRMq-----~V~~Vk~S~Dskyi~SGSdd~nvR 340 (433)
T KOG0268|consen 273 SAVMDVDFSPT------GQEFVSGSY-DKSIRIFPVNHGHSRDIYHTKRMQ-----HVFCVKYSMDSKYIISGSDDGNVR 340 (433)
T ss_pred eeEEEeccCCC------cchhccccc-cceEEEeecCCCcchhhhhHhhhh-----eeeEEEEeccccEEEecCCCccee
Confidence 34556677763 344566778 99999999875321 1 111111 111222223568999999999998
Q ss_pred EEEEe
Q 001387 607 NFLLN 611 (1088)
Q Consensus 607 ~y~~~ 611 (1088)
.+.-.
T Consensus 341 lWka~ 345 (433)
T KOG0268|consen 341 LWKAK 345 (433)
T ss_pred eeecc
Confidence 87754
No 126
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=82.06 E-value=89 Score=34.68 Aligned_cols=102 Identities=17% Similarity=0.218 Sum_probs=61.1
Q ss_pred ccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCC
Q 001387 714 HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLP 793 (1088)
Q Consensus 714 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~ 793 (1088)
-+..+.|+|+.+..+-++.+. +++|.|..+++-+.++.=- --.++-++ | . ...-++|..+.
T Consensus 369 lVn~V~fSPd~r~IASaSFDk----------SVkLW~g~tGk~lasfRGH-v~~VYqva-w--s--aDsRLlVS~Sk--- 429 (480)
T KOG0271|consen 369 LVNHVSFSPDGRYIASASFDK----------SVKLWDGRTGKFLASFRGH-VAAVYQVA-W--S--ADSRLLVSGSK--- 429 (480)
T ss_pred heeeEEECCCccEEEEeeccc----------ceeeeeCCCcchhhhhhhc-cceeEEEE-e--c--cCccEEEEcCC---
Confidence 467889999999888887764 8999999999877765310 00122222 2 1 12334454432
Q ss_pred CCCCCcceEEEEEEEeCCeEEEEEEEE-ecCceeEeccc-cCeEEEEECCE
Q 001387 794 EENEPTKGRILVFIVEDGKLQLIAEKE-TKGAVYSLNAF-NGKLLAAINQK 842 (1088)
Q Consensus 794 ~e~~~~~Gri~v~~i~~~kl~~~~~~~-~~g~v~ai~~~-~g~Lv~~~g~~ 842 (1088)
--.|.+|++..+|++. ... +...|+++.-- +|..+++-|+.
T Consensus 430 ------DsTLKvw~V~tkKl~~--DLpGh~DEVf~vDwspDG~rV~sggkd 472 (480)
T KOG0271|consen 430 ------DSTLKVWDVRTKKLKQ--DLPGHADEVFAVDWSPDGQRVASGGKD 472 (480)
T ss_pred ------CceEEEEEeeeeeecc--cCCCCCceEEEEEecCCCceeecCCCc
Confidence 2478999998766652 111 23467776643 56666665543
No 127
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=81.85 E-value=1.3e+02 Score=36.26 Aligned_cols=324 Identities=12% Similarity=0.134 Sum_probs=149.2
Q ss_pred CEEEEEECCCeEEEEEEcC--cEE-EEE--eeccCCc-------eeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECC
Q 001387 499 SQVLLATGGGHLVYLEIGD--GIL-TEV--KHAQLEY-------EISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLP 566 (1088)
Q Consensus 499 ~~lvv~~~~~~l~~~~~~~--~~l-~~~--~~~~l~~-------~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~ 566 (1088)
+.++|+.+.+.+.+++++. ..+ .+. ...++.. .-.-+++.| .+..++++.+ ++.+.||.+.
T Consensus 1 D~L~v~tdsg~l~~l~~~~~~~~~~~~~v~~~~~~~~~~~r~~~~G~~l~vDP------~~R~i~v~a~-e~~~~v~~l~ 73 (504)
T PF10433_consen 1 DSLVVTTDSGKLSILEYDPSTHGFFKEFVHQWEPLSKSGSRLSQPGQYLAVDP------SGRCIAVSAY-EGNFLVYPLN 73 (504)
T ss_dssp -EEEEEETTTEEEEEEEEEETTEE-E-EEEEEEE---SSSEB-TT--EEEE-T------TSSEEEEEEB-TTEEEEEE-S
T ss_pred CEEEEEECCCCEEEEEEECCCCccceeeEEEeEecCCCCCChhcCCcEEEECC------cCCEEEEEec-CCeEEEEEec
Confidence 3578888888988888764 222 211 0111111 112344444 3678899999 9999999986
Q ss_pred C-----C--CceEEecCCCCcCceeEEeee--ec-CceEE--EEEeCCC--cEEEEEEecCCCccccceeee----c---
Q 001387 567 D-----L--NLITKEHLGGEIIPRSVLLCA--FE-GISYL--LCALGDG--HLLNFLLNMKTGELTDRKKVS----L--- 625 (1088)
Q Consensus 567 ~-----l--~~~~~~~l~~~~~p~si~~~~--~~-~~~~L--~vgl~~G--~l~~y~~~~~~~~l~~~~~~~----l--- 625 (1088)
. . ......++..+....++++.. .+ ..+.+ +.-..++ .+..|+++...+-....++.. +
T Consensus 74 ~~~~~~~~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~ 153 (504)
T PF10433_consen 74 RSLDSDIAFSPHINSPIKSEGNILDMCFLHPSVGYDNPTLAILYVDSQRRTHLVTYEWSLDDGLNHVISKSTLPIRLPNE 153 (504)
T ss_dssp S----T-TT---EEEE--S-SEEEEEEEES---S-SS-EEEEEEEETT-EEEEEEEE--------EETTTTEEEE--EEE
T ss_pred ccccccccccccccccccCCceEEEEEEEecccCCCCceEEEEEEEecccceeEEEeeecccccceeeeecccccccccc
Confidence 5 0 011112221112333444443 11 22322 2222333 245566543322111111111 1
Q ss_pred CccceeEEEEEeCCceEEEEecCCceEEEecC---CcEEEeeccc-----cccee--eeccC---CCCCCCeEEEEe-CC
Q 001387 626 GTQPITLRTFSSKNTTHVFAASDRPTVIYSSN---KKLLYSNVNL-----KEVSH--MCPFN---SAAFPDSLAIAK-EG 691 (1088)
Q Consensus 626 G~~pv~l~~~~~~~~~~v~~~~~~p~~i~~~~---~~~~~~~l~~-----~~i~~--~~~f~---~~~~~~~l~~~~-~~ 691 (1088)
-..|..|.|+.. ...+++++++.-.+..... +...+.++.. ..+.. ..|.. ...-.+.+++.+ .|
T Consensus 154 ~~~p~~LIPlp~-~~ggllV~~~~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G 232 (504)
T PF10433_consen 154 DELPSFLIPLPN-PPGGLLVGGENIIIYKNHLIGSGDYSFLSIPSPPSSSSSLWTSWARPERNISYDKDGDRILLQDEDG 232 (504)
T ss_dssp E-TTEEEEEE-T-TT-SEEEEESSEEEEEE------TTEEEEE--H-HHHTS-EEEEEE------SSTTSSEEEEEETTS
T ss_pred CCCccEEEEcCC-CCcEEEEECCEEEEEecccccccccccccccCCccCCCceEEEEEeccccceecCCCCEEEEEeCCC
Confidence 123677888753 3457887777665554321 2222222221 12211 12221 111233455555 67
Q ss_pred eEEEEEEcCCCC-eEEEEEeC-CCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEE-CCCCceE
Q 001387 692 ELTIGTIDDIQK-LHIRSIPL-GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYP-LDTFEYG 768 (1088)
Q Consensus 692 ~l~i~~l~~~~~-~~~~~i~l-~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~-~~~~E~v 768 (1088)
.|....+..... +.++.+-- ...+..++|....+.++++.++. + -+.+.-+.....+.++++. ..| +
T Consensus 233 ~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~---g----ds~l~~~~~~~l~~~~~~~N~~P---i 302 (504)
T PF10433_consen 233 DLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEF---G----DSQLLQISLSNLEVLDSLPNWGP---I 302 (504)
T ss_dssp EEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESS---S-----EEEEEEESESEEEEEEE----S---E
T ss_pred eEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEec---C----CcEEEEEeCCCcEEEEeccCcCC---c
Confidence 888888876553 34444332 33567788887653344444443 1 1445445555666666553 333 4
Q ss_pred eEEEEEEEcCCCce------EEEEEeeeeCCCCCCCcceEEEEEEEeCCeEE--EEEEEEecCceeEeccc------cCe
Q 001387 769 CSILSCSFSDDSNV------YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQ--LIAEKETKGAVYSLNAF------NGK 834 (1088)
Q Consensus 769 ~si~~~~~~~~~~~------~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~--~~~~~~~~g~v~ai~~~------~g~ 834 (1088)
..++.......+.. -++.+++. ..+|.|.+++-. -+.+ .+...+.+| |+.+=.+ ..+
T Consensus 303 ~D~~v~~~~~~~~~~~~~~~~lv~~sG~-------g~~gsL~~lr~G-i~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~ 373 (504)
T PF10433_consen 303 VDFCVVDSSNSGQPSNPSSDQLVACSGA-------GKRGSLRILRNG-IGIEGLELASSELPG-VTGIWTLKLSSSDHSY 373 (504)
T ss_dssp EEEEEE-TSSSSS-------EEEEEESS-------GGG-EEEEEEES-BEEE--EEEEEEEST-EEEEEEE-SSSSSBSE
T ss_pred cceEEeccccCCCCcccccceEEEEECc-------CCCCcEEEEecc-CCceeeeeeccCCCC-ceEEEEeeecCCCceE
Confidence 55555433322222 55555542 267999888542 2455 666777777 6665444 347
Q ss_pred EEEEECCEEEEEEee
Q 001387 835 LLAAINQKIQLYKWM 849 (1088)
Q Consensus 835 Lv~~~g~~l~v~~~~ 849 (1088)
|+++.-..-+++.+.
T Consensus 374 lv~S~~~~T~vl~~~ 388 (504)
T PF10433_consen 374 LVLSFPNETRVLQIS 388 (504)
T ss_dssp EEEEESSEEEEEEES
T ss_pred EEEEcCCceEEEEEe
Confidence 889988888888874
No 128
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=81.55 E-value=19 Score=38.91 Aligned_cols=111 Identities=19% Similarity=0.281 Sum_probs=67.5
Q ss_pred EEEEEcCC-CceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccccCe--EEEEEC--CEEEEE
Q 001387 772 LSCSFSDD-SNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGK--LLAAIN--QKIQLY 846 (1088)
Q Consensus 772 ~~~~~~~~-~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~g~--Lv~~~g--~~l~v~ 846 (1088)
+.|.++.. +.+|+|+|. .+|-|+|+++..+++.-- -..+-+++.+|.....+ |+++.. +.|+++
T Consensus 95 csw~yd~~~~~p~la~~G----------~~GvIrVid~~~~~~~~~-~~ghG~sINeik~~p~~~qlvls~SkD~svRlw 163 (385)
T KOG1034|consen 95 CSWSYDSNTGNPFLAAGG----------YLGVIRVIDVVSGQCSKN-YRGHGGSINEIKFHPDRPQLVLSASKDHSVRLW 163 (385)
T ss_pred EEEEecCCCCCeeEEeec----------ceeEEEEEecchhhhccc-eeccCccchhhhcCCCCCcEEEEecCCceEEEE
Confidence 45666654 589999885 579999999876554321 12455677777666433 655444 667776
Q ss_pred EeeeccCcccc-cccccccccceEEEEEEEeCCEEEEEeccccEEEEEEe
Q 001387 847 KWMLRDDGTRE-LQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYK 895 (1088)
Q Consensus 847 ~~~~~~~~~~~-L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~ 895 (1088)
.+ +++.=.- +-+...++-.++.+..+..+++|+-+-+-.|+.+.+.+
T Consensus 164 nI--~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 164 NI--QTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred ec--cCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecC
Confidence 64 3221000 00111223334555556678899999999999988766
No 129
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=81.40 E-value=1.2e+02 Score=35.67 Aligned_cols=210 Identities=12% Similarity=0.050 Sum_probs=108.2
Q ss_pred CCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEE---EcCC---------
Q 001387 712 GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCS---FSDD--------- 779 (1088)
Q Consensus 712 ~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~---~~~~--------- 779 (1088)
.+.+..+.|.++.+.++|++.. +.+++.|..+.+.+..+......++-|+. |. +..+
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~----------g~v~iwD~~~~k~~~~~~~~h~~rvg~la-W~~~~lssGsr~~~I~~~ 285 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSD----------GTVQIWDVKEQKKTRTLRGSHASRVGSLA-WNSSVLSSGSRDGKILNH 285 (484)
T ss_pred CCceEEEEECCCCCEEEEeecC----------CeEEEEehhhccccccccCCcCceeEEEe-ccCceEEEecCCCcEEEE
Confidence 5778889999999999999865 45666666554444433332233333332 21 0000
Q ss_pred -------------CceEEEEEeeeeCCCCCCC---cceEEEEEEEeCCeEEEEEEEEecCceeEe--ccccCeEEE-EEC
Q 001387 780 -------------SNVYYCVGTAYVLPEENEP---TKGRILVFIVEDGKLQLIAEKETKGAVYSL--NAFNGKLLA-AIN 840 (1088)
Q Consensus 780 -------------~~~~i~VGT~~~~~~e~~~---~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai--~~~~g~Lv~-~~g 840 (1088)
.+.--+-|-.....+...+ ...++.+|+... .--..+-.++.++|.|+ |+++..|+| |-|
T Consensus 286 dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~-~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG 364 (484)
T KOG0305|consen 286 DVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS-PEPKFTFTEHTAAVKALAWCPWQSGLLATGGG 364 (484)
T ss_pred EEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCC-ccccEEEeccceeeeEeeeCCCccCceEEcCC
Confidence 0011111222211111111 224677776621 22234446778888877 566665555 444
Q ss_pred CEEE-EEEeeeccCcccccccccccccceEEEEEEEeCCE--EE--EEeccccEEEEEEeccCCeEEEEeccCCCceeEE
Q 001387 841 QKIQ-LYKWMLRDDGTRELQSECGHHGHILALYVQTRGDF--IV--VGDLMKSISLLIYKHEEGAIEERARDYNANWMSA 915 (1088)
Q Consensus 841 ~~l~-v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~--I~--vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~ 915 (1088)
..-+ +.-|+. .+...+... ++...+.+|.+.+.. |+ .|....-+.+++|-. -+.+..+.... ..|..
T Consensus 365 s~D~~i~fwn~--~~g~~i~~v---dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps-~~~~~~l~gH~--~RVl~ 436 (484)
T KOG0305|consen 365 SADRCIKFWNT--NTGARIDSV---DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS-MKLVAELLGHT--SRVLY 436 (484)
T ss_pred CcccEEEEEEc--CCCcEeccc---ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc-cceeeeecCCc--ceeEE
Confidence 4333 222332 122333222 344456677766543 43 488888888888754 22333332222 22433
Q ss_pred EEEeeC-ceEEEEccCCcEEEEeeCCC
Q 001387 916 VEILDD-DIYLGAENNFNLFTVRKNSE 941 (1088)
Q Consensus 916 ~~~l~~-~~~l~~D~~gnl~~l~~~~~ 941 (1088)
...=.+ ++++.+..+.+|.++..-+.
T Consensus 437 la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 437 LALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEECCCCCEEEEecccCcEEeccccCC
Confidence 333233 46788889999999987553
No 130
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=81.35 E-value=47 Score=36.68 Aligned_cols=136 Identities=10% Similarity=0.108 Sum_probs=82.4
Q ss_pred CeEEEEEEcCCCCeEEEEEeCCC---ccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCce
Q 001387 691 GELTIGTIDDIQKLHIRSIPLGE---HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEY 767 (1088)
Q Consensus 691 ~~l~i~~l~~~~~~~~~~i~l~~---tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~ 767 (1088)
+++++.+..+ ..|.+.+.|+-. .+.-++++|..+.....|+-. .+|++.|-.+..--...-.+.++.
T Consensus 234 ~~I~lw~~~~-g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~D---------gsIrIWDiRs~~~~~~~~~kAh~s 303 (440)
T KOG0302|consen 234 KGIHLWEPST-GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCD---------GSIRIWDIRSGPKKAAVSTKAHNS 303 (440)
T ss_pred cceEeeeecc-CceeecCccccccccchhhhccCCccCceEEeeecC---------ceEEEEEecCCCccceeEeeccCC
Confidence 3445555555 678888887753 455567777666555555432 688888876552222222244444
Q ss_pred EeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEE-EEEEEE-ecCceeEeccc--cCeEEEEEC--C
Q 001387 768 GCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQ-LIAEKE-TKGAVYSLNAF--NGKLLAAIN--Q 841 (1088)
Q Consensus 768 v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~-~~~~~~-~~g~v~ai~~~--~g~Lv~~~g--~ 841 (1088)
=.-+.+|. ...++|+-|. -.|.+.++++..-|.. .++..+ +++|||+|.=- ....+++.| +
T Consensus 304 DVNVISWn---r~~~lLasG~----------DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~ 370 (440)
T KOG0302|consen 304 DVNVISWN---RREPLLASGG----------DDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDN 370 (440)
T ss_pred ceeeEEcc---CCcceeeecC----------CCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCC
Confidence 33344552 2345777664 4589999999854443 455554 69999999733 355665555 7
Q ss_pred EEEEEEee
Q 001387 842 KIQLYKWM 849 (1088)
Q Consensus 842 ~l~v~~~~ 849 (1088)
++.++++.
T Consensus 371 QitiWDls 378 (440)
T KOG0302|consen 371 QITIWDLS 378 (440)
T ss_pred cEEEEEee
Confidence 88887775
No 131
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=80.53 E-value=38 Score=36.03 Aligned_cols=154 Identities=14% Similarity=0.100 Sum_probs=95.8
Q ss_pred EEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC--eEEEEEEEEecCceeEecccc------CeEEEEECCEEEE
Q 001387 774 CSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG--KLQLIAEKETKGAVYSLNAFN------GKLLAAINQKIQL 845 (1088)
Q Consensus 774 ~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~--kl~~~~~~~~~g~v~ai~~~~------g~Lv~~~g~~l~v 845 (1088)
|....+.+..++||+-.. ...-+|.+...+.. .+.....++++-|++.+--+. -.|++..|..+++
T Consensus 52 Ws~~~~~~~rla~gS~~E------e~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRl 125 (364)
T KOG0290|consen 52 WSVRPDKKFRLAVGSFIE------EYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRL 125 (364)
T ss_pred cccCCCcceeEEEeeecc------ccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccCeEEE
Confidence 444455788999998652 24567777777744 444444568899999887552 2499999999999
Q ss_pred EEeeeccCcccccccc------cccccceEEEEEEEe---CCEEEEEeccccEEEEEEecc-C--CeEEEEeccCCCcee
Q 001387 846 YKWMLRDDGTRELQSE------CGHHGHILALYVQTR---GDFIVVGDLMKSISLLIYKHE-E--GAIEERARDYNANWM 913 (1088)
Q Consensus 846 ~~~~~~~~~~~~L~~~------~~~~~~~~~~~l~~~---~~~I~vgD~~~Sv~~~~~~~~-~--~~l~~~~~D~~~~~v 913 (1088)
++.... +...++... ..+.. ..+|..+. -++|.+.-+-.-.++...... . -+-.++|.| ..|
T Consensus 126 Wri~~e-e~~~~~~~~L~~~kns~~~a--PlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHD---KEV 199 (364)
T KOG0290|consen 126 WRIGDE-ESRVELQSVLNNNKNSEFCA--PLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHD---KEV 199 (364)
T ss_pred EeccCc-CCceehhhhhccCcccccCC--cccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecC---cce
Confidence 887532 222222111 11111 22444433 467777777777766544332 1 145677766 456
Q ss_pred EEEEEeeC--ceEEEEccCCcEEEEeeC
Q 001387 914 SAVEILDD--DIYLGAENNFNLFTVRKN 939 (1088)
Q Consensus 914 ~~~~~l~~--~~~l~~D~~gnl~~l~~~ 939 (1088)
..+.|+.. +.|...-.+|.+.+|+.-
T Consensus 200 ~DIaf~~~s~~~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 200 YDIAFLKGSRDVFASVGADGSVRMFDLR 227 (364)
T ss_pred eEEEeccCccceEEEecCCCcEEEEEec
Confidence 77888874 346666679999998864
No 132
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=80.20 E-value=47 Score=40.42 Aligned_cols=182 Identities=14% Similarity=0.133 Sum_probs=101.7
Q ss_pred CEEEEEEeecCCCcCcceeEEEEEEeCC--CceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceE
Q 001387 725 RTFAICSLKNQSCAEESEMHFVRLLDDQ--TFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGR 802 (1088)
Q Consensus 725 ~~~~v~~~~~~~~~~~~~~s~l~lid~~--t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gr 802 (1088)
..|+++..+. .....+++..+||. +|..+....-.... .+++. + +...+|||.... ...-..
T Consensus 334 ~lYv~GG~~~----~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~--~~v~~--l---~g~iYavGG~dg-----~~~l~s 397 (571)
T KOG4441|consen 334 KLYVVGGYDS----GSDRLSSVERYDPRTNQWTPVAPMNTKRSD--FGVAV--L---DGKLYAVGGFDG-----EKSLNS 397 (571)
T ss_pred EEEEEccccC----CCcccceEEEecCCCCceeccCCccCcccc--ceeEE--E---CCEEEEEecccc-----cccccc
Confidence 5666664431 11245788888884 45544322211111 12222 2 367788886431 112224
Q ss_pred EEEEEEeCCeEEEEEEEEecCceeEeccccCeEEEEEC--------CEEEEEEeeeccCcccccccccccccceEEEEEE
Q 001387 803 ILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAIN--------QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQ 874 (1088)
Q Consensus 803 i~v~~i~~~kl~~~~~~~~~g~v~ai~~~~g~Lv~~~g--------~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~ 874 (1088)
+-.|+...++.+.+......-.=.+++.++|+|++.-| +.+..|+ .. ..+|+.. +.+...-....+.
T Consensus 398 vE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YD--P~-t~~W~~~--~~M~~~R~~~g~a 472 (571)
T KOG4441|consen 398 VECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYD--PE-TNTWTLI--APMNTRRSGFGVA 472 (571)
T ss_pred EEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEc--CC-CCceeec--CCcccccccceEE
Confidence 55666666788888876665555677788999988877 3444544 22 2334443 2222221223356
Q ss_pred EeCCEEEE-Eecccc---EEEEEEeccCCeEEEEeccCCCceeEEEEEeeCceEEEE
Q 001387 875 TRGDFIVV-GDLMKS---ISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGA 927 (1088)
Q Consensus 875 ~~~~~I~v-gD~~~S---v~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l~~ 927 (1088)
+.+++|++ |..... -++-+|+++.++-..++.-..++....+..++...++++
T Consensus 473 ~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vG 529 (571)
T KOG4441|consen 473 VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVG 529 (571)
T ss_pred EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEe
Confidence 77887765 543221 114578999899888877777777766666666555543
No 133
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=80.06 E-value=1.4e+02 Score=35.71 Aligned_cols=106 Identities=14% Similarity=0.218 Sum_probs=59.8
Q ss_pred cCceeEecccc-------CeE-EEEECCEEEEEEeeeccCcccccccccccccceEEEEEE--EeCCEEEEEeccccEEE
Q 001387 822 KGAVYSLNAFN-------GKL-LAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQ--TRGDFIVVGDLMKSISL 891 (1088)
Q Consensus 822 ~g~v~ai~~~~-------g~L-v~~~g~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~--~~~~~I~vgD~~~Sv~~ 891 (1088)
..||.+|+--. +-+ ++-=|+++-.|.++ |+ ...+.. ....-|.+++ ..|.++++|-.-+.+.+
T Consensus 176 Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls----G~--~Igk~r-~L~FdP~CisYf~NGEy~LiGGsdk~L~~ 248 (1081)
T KOG1538|consen 176 NSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS----GK--QIGKDR-ALNFDPCCISYFTNGEYILLGGSDKQLSL 248 (1081)
T ss_pred CCCceEEEecCCCCCCccceEEEEeccceeEEEEec----ce--eecccc-cCCCCchhheeccCCcEEEEccCCCceEE
Confidence 45777776431 122 33456788888874 21 211110 1111234444 45789999999999987
Q ss_pred EEEeccCCeEEEEeccCCCceeEEEEEeeC-ceEEEEccCCcEEEEee
Q 001387 892 LIYKHEEGAIEERARDYNANWMSAVEILDD-DIYLGAENNFNLFTVRK 938 (1088)
Q Consensus 892 ~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~-~~~l~~D~~gnl~~l~~ 938 (1088)
+ ..++-+|--++. ...|+-++..=.. .++.++=.+|.|..|..
T Consensus 249 f--TR~GvrLGTvg~--~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 249 F--TRDGVRLGTVGE--QDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred E--eecCeEEeeccc--cceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 5 556667777765 4455544443322 24544447888887764
No 134
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.98 E-value=25 Score=38.93 Aligned_cols=130 Identities=10% Similarity=0.153 Sum_probs=69.8
Q ss_pred cCceeEeccccCeEEEEEC-CEEEEEEeeeccCcccccccccccccceEEEEEEE-eCCEEEEEecc--ccEEEEEEecc
Q 001387 822 KGAVYSLNAFNGKLLAAIN-QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQT-RGDFIVVGDLM--KSISLLIYKHE 897 (1088)
Q Consensus 822 ~g~v~ai~~~~g~Lv~~~g-~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~-~~~~I~vgD~~--~Sv~~~~~~~~ 897 (1088)
.+++-.+...+|.|+.|++ +.+.++.....+....+|...+... ..+.+.-.. ..+++..|-.. +-+-+ |+.+
T Consensus 105 ~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~-g~~~~r~~~~~p~Iva~GGke~~n~lki--wdle 181 (412)
T KOG3881|consen 105 TKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGP-GLYDVRQTDTDPYIVATGGKENINELKI--WDLE 181 (412)
T ss_pred cccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecCC-ceeeeccCCCCCceEecCchhcccceee--eecc
Confidence 5677777888888888877 4566655432222233444333221 111121111 12333334444 22222 3333
Q ss_pred CCeEEEEecc--------CCCceeEEEEEeeC--c-eEEEEccCCcEEEEeeCCCCCCcccccceeEEEEEEcCCcc
Q 001387 898 EGAIEERARD--------YNANWMSAVEILDD--D-IYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFV 963 (1088)
Q Consensus 898 ~~~l~~~~~D--------~~~~~v~~~~~l~~--~-~~l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v 963 (1088)
..+-+.-|+. ..|.|.+++.|++. . .++.+-+.+.+.+|....+ =.++++|-..+.+
T Consensus 182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q---------RRPV~~fd~~E~~ 249 (412)
T KOG3881|consen 182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ---------RRPVAQFDFLENP 249 (412)
T ss_pred cceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCccc---------CcceeEeccccCc
Confidence 3333333433 36789999999977 3 4778889999999975432 1255666666554
No 135
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=79.22 E-value=34 Score=41.49 Aligned_cols=118 Identities=10% Similarity=0.127 Sum_probs=75.5
Q ss_pred EEeCC-CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEE
Q 001387 708 SIPLG-EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCV 786 (1088)
Q Consensus 708 ~i~l~-~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~V 786 (1088)
++..+ ..|..+.-+. .+.++++-. .++.+.+.|...........|+.++.+..+. |....++...++|
T Consensus 24 ~~~T~i~~~~li~gss-~~k~a~V~~---------~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLD-Wtst~d~qsiLaV 92 (631)
T PF12234_consen 24 TFETGISNPSLISGSS-IKKIAVVDS---------SRSELTIWDTRSGVLEYEESFSEDDPIRDLD-WTSTPDGQSILAV 92 (631)
T ss_pred EEecCCCCcceEeecc-cCcEEEEEC---------CCCEEEEEEcCCcEEEEeeeecCCCceeece-eeecCCCCEEEEE
Confidence 44444 3566666555 444444422 2478899998777766777788888888876 5555567889999
Q ss_pred EeeeeCCCCCCCcceEEEEEEEe-----CC-----eEEEEEEEEe-cCceeEeccc-cCeEEEEECCEEEEEE
Q 001387 787 GTAYVLPEENEPTKGRILVFIVE-----DG-----KLQLIAEKET-KGAVYSLNAF-NGKLLAAINQKIQLYK 847 (1088)
Q Consensus 787 GT~~~~~~e~~~~~Gri~v~~i~-----~~-----kl~~~~~~~~-~g~v~ai~~~-~g~Lv~~~g~~l~v~~ 847 (1088)
|-.. +|.+|.-- +. .++.+.-.++ +.|+.+.+=. +|.|++|.|+++++|+
T Consensus 93 Gf~~-----------~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~d 154 (631)
T PF12234_consen 93 GFPH-----------HVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFD 154 (631)
T ss_pred EcCc-----------EEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEEC
Confidence 9642 44444322 11 2333333333 4677766644 6899999999999986
No 136
>PHA02713 hypothetical protein; Provisional
Probab=78.95 E-value=54 Score=39.91 Aligned_cols=150 Identities=12% Similarity=0.105 Sum_probs=81.6
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccccCeEEEEECC-------------------
Q 001387 781 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQ------------------- 841 (1088)
Q Consensus 781 ~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~g~Lv~~~g~------------------- 841 (1088)
...+++|... +. .....+..|+...++.+.+.....+-.-.+++.++|+|++.-|.
T Consensus 352 g~IYviGG~~---~~--~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 352 DTIYAIGGQN---GT--NVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred CEEEEECCcC---CC--CCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccc
Confidence 5677887632 11 12335777877766777655433322223445568888776553
Q ss_pred ------EEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEEE-Eecc---ccE-EEEEEeccC-CeEEEEeccCC
Q 001387 842 ------KIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVV-GDLM---KSI-SLLIYKHEE-GAIEERARDYN 909 (1088)
Q Consensus 842 ------~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~v-gD~~---~Sv-~~~~~~~~~-~~l~~~~~D~~ 909 (1088)
.+..|+ ... .++ ...+.+...-...++.+.++.|+| |... ... .+.+|+++. ++-..++.=+.
T Consensus 427 ~~~~~~~ve~YD--P~t-d~W--~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~ 501 (557)
T PHA02713 427 DTHSSNKVIRYD--TVN-NIW--ETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES 501 (557)
T ss_pred cccccceEEEEC--CCC-CeE--eecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc
Confidence 233333 322 223 333322222122345677887765 5332 111 256899987 78888887677
Q ss_pred CceeEEEEEeeCceEEEEccCCcEEEEeeCC
Q 001387 910 ANWMSAVEILDDDIYLGAENNFNLFTVRKNS 940 (1088)
Q Consensus 910 ~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~~ 940 (1088)
+|...++..+++.-++++..+|.-.+-.||+
T Consensus 502 ~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 502 RLSALHTILHDNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred ccccceeEEECCEEEEEeeecceeehhhcCc
Confidence 7777667777665555554555434445554
No 137
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=78.62 E-value=82 Score=34.74 Aligned_cols=161 Identities=12% Similarity=0.167 Sum_probs=84.3
Q ss_pred EEEEEecCceeEeccc-cCeEEEEECCE--EEEEEeeeccCcccccccccccccceEEEEEEEeCCEEEEEeccccEEEE
Q 001387 816 IAEKETKGAVYSLNAF-NGKLLAAINQK--IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLL 892 (1088)
Q Consensus 816 ~~~~~~~g~v~ai~~~-~g~Lv~~~g~~--l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~ 892 (1088)
+.-..++++|+|+.-- +..|++.-|.. -++++.. .|. .+-....+.-.+..++.+..+.++..||+.-=|.++
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~---~ge-~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDIS---TGE-FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEcc---CCc-ceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 3335678899988755 55666655533 3454432 232 222223333334444555668899999988877766
Q ss_pred EEeccCCeEEEEeccCCCceeEEEEEeeCceEEEEccCCcEEEEeeCCCCCCcccccceeEEEEEEcCCccceEEeeeee
Q 001387 893 IYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLV 972 (1088)
Q Consensus 893 ~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~ 972 (1088)
+.+....+-.....=..--|+.=. . .-..+++++.+|+++.++.+.+... ++ ..-.+..+++ |.+.
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WH-p-~a~illAG~~DGsvWmw~ip~~~~~-----kv----~~Gh~~~ct~---G~f~ 199 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWH-P-RAHILLAGSTDGSVWMWQIPSQALC-----KV----MSGHNSPCTC---GEFI 199 (399)
T ss_pred EcccCceEEEeecccCceEEEEec-c-cccEEEeecCCCcEEEEECCCccee-----eE----ecCCCCCccc---cccc
Confidence 544322221111000011232111 1 1124678899999999998864210 11 0112223332 3332
Q ss_pred ecCCCCCCCCccEEEEEcccccEEEEEecC
Q 001387 973 MRLPDSDVGQIPTVIFGTVNGVIGVIASLP 1002 (1088)
Q Consensus 973 ~~~~~~~~~~~~~~l~~t~~G~i~~l~~l~ 1002 (1088)
+ .+..++.+-.+|+|-..-|-+
T Consensus 200 p--------dGKr~~tgy~dgti~~Wn~kt 221 (399)
T KOG0296|consen 200 P--------DGKRILTGYDDGTIIVWNPKT 221 (399)
T ss_pred C--------CCceEEEEecCceEEEEecCC
Confidence 1 256777777788887776654
No 138
>PTZ00421 coronin; Provisional
Probab=78.35 E-value=1.6e+02 Score=35.25 Aligned_cols=113 Identities=14% Similarity=0.064 Sum_probs=66.9
Q ss_pred cEEEEEECC---CEEEEEECCCeEEEEEEcCcEEE-----EEeec-cCCceeEEEEeCCCCCCCCCccEEEEEEecCCEE
Q 001387 490 SVNVATANA---SQVLLATGGGHLVYLEIGDGILT-----EVKHA-QLEYEISCLDINPIGENPSYSQIAAVGMWTDISV 560 (1088)
Q Consensus 490 ~I~~a~~~~---~~lvv~~~~~~l~~~~~~~~~l~-----~~~~~-~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i 560 (1088)
.|.+.+.++ ..++.+..++.+...++..+.+. .+..+ .-...|.++++.|. ...+++.|.+ |+.+
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~-----~~~iLaSgs~-DgtV 150 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPS-----AMNVLASAGA-DMVV 150 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcC-----CCCEEEEEeC-CCEE
Confidence 466666543 35555556777777776542211 11111 12456889998752 1457888888 9999
Q ss_pred EEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEe
Q 001387 561 RIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLN 611 (1088)
Q Consensus 561 ~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~ 611 (1088)
.||++...+.+....- ......++.+.. +...|..|..||.+..|...
T Consensus 151 rIWDl~tg~~~~~l~~-h~~~V~sla~sp--dG~lLatgs~Dg~IrIwD~r 198 (493)
T PTZ00421 151 NVWDVERGKAVEVIKC-HSDQITSLEWNL--DGSLLCTTSKDKKLNIIDPR 198 (493)
T ss_pred EEEECCCCeEEEEEcC-CCCceEEEEEEC--CCCEEEEecCCCEEEEEECC
Confidence 9999976444322111 112234454432 34678889999999887754
No 139
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=77.95 E-value=76 Score=38.66 Aligned_cols=174 Identities=17% Similarity=0.144 Sum_probs=97.9
Q ss_pred eeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEe
Q 001387 742 EMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKET 821 (1088)
Q Consensus 742 ~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~ 821 (1088)
....++.+||.+.+-...-+++..-.-.+++.+ +...+++|.-.. ....--.+..|+...++...+.+...
T Consensus 299 ~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-----~~~lYv~GG~~~----~~~~l~~ve~YD~~~~~W~~~a~M~~ 369 (571)
T KOG4441|consen 299 SLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-----NGKLYVVGGYDS----GSDRLSSVERYDPRTNQWTPVAPMNT 369 (571)
T ss_pred ccceeEEecCCcCcEeecCCCCcccccccEEEE-----CCEEEEEccccC----CCcccceEEEecCCCCceeccCCccC
Confidence 346788888865422222223222222333333 246777775321 12344567777777666666555555
Q ss_pred cCceeEeccccCeEEEEECC-------EEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEEE-Ee------ccc
Q 001387 822 KGAVYSLNAFNGKLLAAINQ-------KIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVV-GD------LMK 887 (1088)
Q Consensus 822 ~g~v~ai~~~~g~Lv~~~g~-------~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~v-gD------~~~ 887 (1088)
.-.=.+++.++|.|++.-|. ++..|+ .. ..++..++.+...-......+.+.+|++ |= ..+
T Consensus 370 ~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YD--p~---~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~ 444 (571)
T KOG4441|consen 370 KRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYD--PV---TNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLN 444 (571)
T ss_pred ccccceeEEECCEEEEEeccccccccccEEEec--CC---CCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccc
Confidence 44444555555655554443 244444 22 2234444444433345556677776665 22 334
Q ss_pred cEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCceEEEEccCC
Q 001387 888 SISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNF 931 (1088)
Q Consensus 888 Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l~~D~~g 931 (1088)
| +-.|++..++=..++.=..+|....+..+++..++++..+|
T Consensus 445 s--ve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~ 486 (571)
T KOG4441|consen 445 S--VECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDG 486 (571)
T ss_pred e--EEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccC
Confidence 4 45789999988888887888887778888777666655555
No 140
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=77.24 E-value=38 Score=41.47 Aligned_cols=153 Identities=15% Similarity=0.125 Sum_probs=81.5
Q ss_pred cccEEEEcCCEEEEEEeCCC-C-------eE-------------EEEEEEeeeeEeEEeeeccCCCCccEEEEEeCcCeE
Q 001387 29 ELNLIIAKCTRIEIHLLTPQ-G-------LQ-------------PMLDVPIYGRIATLELFRPHGEAQDFLFIATERYKF 87 (1088)
Q Consensus 29 ~~~Lvv~k~~~le~y~~~~~-~-------L~-------------~~~~~~l~~~i~~i~~~r~~~~~~d~L~v~~~~~~~ 87 (1088)
...|++|.++.|+||+.+.- . +. .+...|..-+|-.|..-.. ...+.|++++|+|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~l--g~~EVLl~c~DdG~V 126 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDL--GGEEVLLLCTDDGDV 126 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEeccc--CCeeEEEEEecCCeE
Confidence 56789999999999997631 0 00 1111121222333322122 367999999999999
Q ss_pred EEEEEeCCCCcEEEEEeeeccCCCCc----c----C--CCCCeEEEC--CCCCEEEEEecCCeEEEEeCCCC-Cccccce
Q 001387 88 CVLQWDAESSELITRAMGDVSDRIGR----P----T--DNGQIGIID--PDCRLIGLHLYDGLFKVIPFDNK-GQLKEAF 154 (1088)
Q Consensus 88 ~il~~~~~~~~~~t~s~~~~~~~~~r----~----~--~~~~~l~vd--p~~r~~~~~~~~~~l~i~p~~~~-~~~~~~~ 154 (1088)
.+.+-+.-...+... .........| | . .+-=-++++ ...|.+|++.-...+.|+-|... +.. +
T Consensus 127 ~~Yyt~~I~~~i~~~-~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~---~ 202 (717)
T PF08728_consen 127 LAYYTETIIEAIERF-SEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERF---Y 202 (717)
T ss_pred EEEEHHHHHHHHHhh-ccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccc---c
Confidence 887553200000000 0000000001 1 0 010135666 88899999998888888877542 111 1
Q ss_pred ecc--cCCceeEEEEeecCCCCcE--EEEEEEecCCc
Q 001387 155 NIR--LEELQVLDIKFLYGCAKPT--IVVLYQDNKDA 187 (1088)
Q Consensus 155 ~i~--l~~~~i~d~~fl~~~~~p~--laiL~~~~~~~ 187 (1088)
..+ -..+||=.++|++...++. .-+.+.+..+.
T Consensus 203 ~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~ 239 (717)
T PF08728_consen 203 HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGE 239 (717)
T ss_pred cccccccccCCCeeEeecCCCCCccceEEEEEeccCc
Confidence 111 1336888899997654443 45556666543
No 141
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=76.80 E-value=1.4e+02 Score=34.06 Aligned_cols=271 Identities=19% Similarity=0.262 Sum_probs=131.9
Q ss_pred CCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCC-CCc-----eEEe--cCCCCcCc--eeEEeeeec-CceEE
Q 001387 528 LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD-LNL-----ITKE--HLGGEIIP--RSVLLCAFE-GISYL 596 (1088)
Q Consensus 528 l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~-l~~-----~~~~--~l~~~~~p--~si~~~~~~-~~~~L 596 (1088)
-+.||.|-+-+|+. ...++.|.- +...++|++.. -.. +... .......| +++--+..+ +...|
T Consensus 177 ~~~~V~~~~WnP~~-----~~llasg~~-~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~L 250 (524)
T KOG0273|consen 177 HESEVFICAWNPLR-----DGLLASGSG-DSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLL 250 (524)
T ss_pred CCCceEEEecCchh-----hhhhhccCC-ccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeE
Confidence 45677777777643 235666655 66788888863 111 1111 11111122 233222333 45678
Q ss_pred EEEeCCCcEEEEEEecCCCccccceeeecC--ccceeEEEEE-eCCceEEEEecCCceEEEecCCcEEEeecccccceee
Q 001387 597 LCALGDGHLLNFLLNMKTGELTDRKKVSLG--TQPITLRTFS-SKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHM 673 (1088)
Q Consensus 597 ~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG--~~pv~l~~~~-~~~~~~v~~~~~~p~~i~~~~~~~~~~~l~~~~i~~~ 673 (1088)
..|..||.+-.|..+. .+. ..+| ..|+ ..++ .+.++.++..|---..+.++. ..+.+...
T Consensus 251 atG~~~G~~riw~~~G---~l~----~tl~~HkgPI--~slKWnk~G~yilS~~vD~ttilwd~--------~~g~~~q~ 313 (524)
T KOG0273|consen 251 ATGSEDGEARIWNKDG---NLI----STLGQHKGPI--FSLKWNKKGTYILSGGVDGTTILWDA--------HTGTVKQQ 313 (524)
T ss_pred EEeecCcEEEEEecCc---hhh----hhhhccCCce--EEEEEcCCCCEEEeccCCccEEEEec--------cCceEEEe
Confidence 8899999999988753 221 1222 2354 2222 223344555543333333322 11111111
Q ss_pred eccCCCC-C------CCeEEE-EeCCeEEEEEEcCCCCeEEEEEe-CCCccCeEEEecCCCEEEEEEeecCCCcCcceeE
Q 001387 674 CPFNSAA-F------PDSLAI-AKEGELTIGTIDDIQKLHIRSIP-LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMH 744 (1088)
Q Consensus 674 ~~f~~~~-~------~~~l~~-~~~~~l~i~~l~~~~~~~~~~i~-l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s 744 (1088)
-+|++.. . .+-|+. .+++.+.+|+++... |++++. =......+-|.|..++++-++.+ .
T Consensus 314 f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~--P~~t~~GH~g~V~alk~n~tg~LLaS~SdD----------~ 381 (524)
T KOG0273|consen 314 FEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDR--PVKTFIGHHGEVNALKWNPTGSLLASCSDD----------G 381 (524)
T ss_pred eeeccCCccceEEecCceEeecCCCceEEEEEecCCC--cceeeecccCceEEEEECCCCceEEEecCC----------C
Confidence 2222211 1 123444 448889999998754 222221 12345567788776665554433 5
Q ss_pred EEEEEeCCCceEEEEEECCCCc-eEeEEEEEEEcC----C-CceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEE
Q 001387 745 FVRLLDDQTFEFISTYPLDTFE-YGCSILSCSFSD----D-SNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAE 818 (1088)
Q Consensus 745 ~l~lid~~t~~~i~~~~~~~~E-~v~si~~~~~~~----~-~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~ 818 (1088)
.+++.+-+... ....|..++ .+.++. |.-.. . .....+... ...+.+.+|+++.+ ..+|.
T Consensus 382 TlkiWs~~~~~--~~~~l~~Hskei~t~~-wsp~g~v~~n~~~~~~l~sa---------s~dstV~lwdv~~g--v~i~~ 447 (524)
T KOG0273|consen 382 TLKIWSMGQSN--SVHDLQAHSKEIYTIK-WSPTGPVTSNPNMNLMLASA---------SFDSTVKLWDVESG--VPIHT 447 (524)
T ss_pred eeEeeecCCCc--chhhhhhhccceeeEe-ecCCCCccCCCcCCceEEEe---------ecCCeEEEEEccCC--ceeEe
Confidence 78887643222 222343333 234443 32111 0 111112122 24568889988754 34454
Q ss_pred E-EecCceeEeccc-cCeEEEE--ECCEEEEEE
Q 001387 819 K-ETKGAVYSLNAF-NGKLLAA--INQKIQLYK 847 (1088)
Q Consensus 819 ~-~~~g~v~ai~~~-~g~Lv~~--~g~~l~v~~ 847 (1088)
. ++..|||+++.- +|+.++. .+..|+++.
T Consensus 448 f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 448 LMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred eccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence 4 788999999977 3444432 224555543
No 142
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=76.33 E-value=19 Score=38.17 Aligned_cols=77 Identities=12% Similarity=0.222 Sum_probs=51.8
Q ss_pred CceeEEEEeC-CCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEee-eec-CceEEEEEeCCCcE
Q 001387 529 EYEISCLDIN-PIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLC-AFE-GISYLLCALGDGHL 605 (1088)
Q Consensus 529 ~~~is~l~~~-~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~-~~~-~~~~L~vgl~~G~l 605 (1088)
...|+|++.- ....+......+++||. +|.+.|++-..+.+..+-.++ .+|..+... .+. ..-.++|.+|||.+
T Consensus 176 ~t~ITcm~tikk~~~d~~a~scLViGTE-~~~i~iLd~~af~il~~~~lp--svPv~i~~~G~~devdyRI~Va~Rdg~i 252 (257)
T PF14779_consen 176 QTVITCMATIKKSSADEDAVSCLVIGTE-SGEIYILDPQAFTILKQVQLP--SVPVFISVSGQYDEVDYRIVVACRDGKI 252 (257)
T ss_pred CceeEEeeeecccccCCCCcceEEEEec-CCeEEEECchhheeEEEEecC--CCceEEEEEeeeeccceEEEEEeCCCEE
Confidence 3567888531 11112224568899999 999999987778777776776 466666443 232 45669999999988
Q ss_pred EEE
Q 001387 606 LNF 608 (1088)
Q Consensus 606 ~~y 608 (1088)
+..
T Consensus 253 y~i 255 (257)
T PF14779_consen 253 YTI 255 (257)
T ss_pred EEE
Confidence 753
No 143
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=76.30 E-value=1.3e+02 Score=33.40 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=69.9
Q ss_pred eEEEEe-CCeEEEEEEcCCCCeEEEEEeCCCc-----------cCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeC
Q 001387 684 SLAIAK-EGELTIGTIDDIQKLHIRSIPLGEH-----------PRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDD 751 (1088)
Q Consensus 684 ~l~~~~-~~~l~i~~l~~~~~~~~~~i~l~~t-----------p~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~ 751 (1088)
.+++.+ ++.+.-..+....--..++.++-.. -.-++||+..+.+.|+..+.....-......|-.+|.
T Consensus 197 ~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~ 276 (342)
T PF06433_consen 197 RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDL 276 (342)
T ss_dssp EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEET
T ss_pred eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEEC
Confidence 577777 7888877777665444455655311 2448999888777676653321111234678999999
Q ss_pred CCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCe
Q 001387 752 QTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGK 812 (1088)
Q Consensus 752 ~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~k 812 (1088)
++.+.+.+++++. .+.|| .+..+.++.|..-+. ..|-|++|+...+|
T Consensus 277 ~t~krv~Ri~l~~--~~~Si---~Vsqd~~P~L~~~~~---------~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 277 KTHKRVARIPLEH--PIDSI---AVSQDDKPLLYALSA---------GDGTLDVYDAATGK 323 (342)
T ss_dssp TTTEEEEEEEEEE--EESEE---EEESSSS-EEEEEET---------TTTEEEEEETTT--
T ss_pred CCCeEEEEEeCCC--ccceE---EEccCCCcEEEEEcC---------CCCeEEEEeCcCCc
Confidence 9999999999863 23444 445556776653331 34788899876553
No 144
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=75.26 E-value=1.7e+02 Score=34.00 Aligned_cols=91 Identities=11% Similarity=0.118 Sum_probs=55.9
Q ss_pred CCeEEEEEEcCCCC-eEEEE-EeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCce
Q 001387 690 EGELTIGTIDDIQK-LHIRS-IPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEY 767 (1088)
Q Consensus 690 ~~~l~i~~l~~~~~-~~~~~-i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~ 767 (1088)
++.|++=.|...++ ++++. ++....-.-.+|+|.-++++..++-.. ......|.|+|+.|++.+..+.+.....
T Consensus 385 D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~----~~~~g~L~f~d~~t~d~v~ki~i~~aSv 460 (641)
T KOG0772|consen 385 DDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPN----GMTAGTLFFFDRMTLDTVYKIDISTASV 460 (641)
T ss_pred CCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccC----CCCCceEEEEeccceeeEEEecCCCceE
Confidence 57777777766543 23221 222233345688999888877776431 1133579999999999999998884332
Q ss_pred EeEEEEEEEcCCCceEEEEEee
Q 001387 768 GCSILSCSFSDDSNVYYCVGTA 789 (1088)
Q Consensus 768 v~si~~~~~~~~~~~~i~VGT~ 789 (1088)
+ -+.|.- +-+-|.+|++
T Consensus 461 v--~~~Whp---kLNQi~~gsg 477 (641)
T KOG0772|consen 461 V--RCLWHP---KLNQIFAGSG 477 (641)
T ss_pred E--EEeecc---hhhheeeecC
Confidence 2 233532 2345777875
No 145
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=75.22 E-value=2.4e+02 Score=35.90 Aligned_cols=142 Identities=18% Similarity=0.197 Sum_probs=80.9
Q ss_pred eEEEEeCCeEEEEEEcCC-CCeEEEEEeCCC--ccCeE-EEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCc---eE
Q 001387 684 SLAIAKEGELTIGTIDDI-QKLHIRSIPLGE--HPRRI-CHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTF---EF 756 (1088)
Q Consensus 684 ~l~~~~~~~l~i~~l~~~-~~~~~~~i~l~~--tp~~i-~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~---~~ 756 (1088)
|.++++++ .++-++.+. .....+.||.+. .++.+ ++..+.+.+++++.+ ++|+++|...- ..
T Consensus 1178 G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaD----------GsvRvyD~R~a~~ds~ 1246 (1387)
T KOG1517|consen 1178 GHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFAD----------GSVRVYDRRMAPPDSL 1246 (1387)
T ss_pred CeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecC----------CceEEeecccCCcccc
Confidence 55666665 555566543 456777788763 23433 245566777777765 57888886321 11
Q ss_pred EEEE-ECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeC-Ce---EEEEEEEEecCceeEeccc
Q 001387 757 ISTY-PLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVED-GK---LQLIAEKETKGAVYSLNAF 831 (1088)
Q Consensus 757 i~~~-~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~-~k---l~~~~~~~~~g~v~ai~~~ 831 (1088)
+..+ +....|.+ -.+++..++-.-++-| ...|+|+++++.- .+ +..+...+..+..+++...
T Consensus 1247 v~~~R~h~~~~~I---v~~slq~~G~~elvSg----------s~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH 1313 (1387)
T KOG1517|consen 1247 VCVYREHNDVEPI---VHLSLQRQGLGELVSG----------SQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVH 1313 (1387)
T ss_pred ceeecccCCcccc---eeEEeecCCCcceeee----------ccCCeEEEEecccCcccccceeeeccccCccceeeeec
Confidence 2222 23333332 2233443332233333 3679999999974 22 4455555666679999877
Q ss_pred cC-eEEEE-ECCEEEEEEee
Q 001387 832 NG-KLLAA-INQKIQLYKWM 849 (1088)
Q Consensus 832 ~g-~Lv~~-~g~~l~v~~~~ 849 (1088)
.. .++++ .++.+.+|+..
T Consensus 1314 ~hapiiAsGs~q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1314 EHAPIIASGSAQLIKIYSLS 1333 (1387)
T ss_pred cCCCeeeecCcceEEEEecC
Confidence 54 35444 33788998863
No 146
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=75.20 E-value=1.6e+02 Score=33.89 Aligned_cols=107 Identities=20% Similarity=0.264 Sum_probs=61.2
Q ss_pred cCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECC-------CCceEeEEEEEE--EcCCC--ceEEEEEeee
Q 001387 722 EQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD-------TFEYGCSILSCS--FSDDS--NVYYCVGTAY 790 (1088)
Q Consensus 722 ~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~-------~~E~v~si~~~~--~~~~~--~~~i~VGT~~ 790 (1088)
.+-...+|++. .++|-++|-..=.+|..-.+. ..+.+++++... +..++ ...+.|||
T Consensus 95 S~iGFvaigy~----------~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT-- 162 (395)
T PF08596_consen 95 SDIGFVAIGYE----------SGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT-- 162 (395)
T ss_dssp -BTSEEEEEET----------TSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE--
T ss_pred CCCcEEEEEec----------CCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe--
Confidence 35566666652 257888888766777664433 356677766543 33332 47899999
Q ss_pred eCCCCCCCcceEEEEEEEe---CC--eEEEEEEE-EecCceeEecccc------------------------CeEEEEEC
Q 001387 791 VLPEENEPTKGRILVFIVE---DG--KLQLIAEK-ETKGAVYSLNAFN------------------------GKLLAAIN 840 (1088)
Q Consensus 791 ~~~~e~~~~~Gri~v~~i~---~~--kl~~~~~~-~~~g~v~ai~~~~------------------------g~Lv~~~g 840 (1088)
..|.+++|.+. ++ ..+..... ..+++|.+|+.++ |+++++..
T Consensus 163 --------n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe 234 (395)
T PF08596_consen 163 --------NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE 234 (395)
T ss_dssp --------TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred --------CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence 45999999998 23 34445554 4678888887662 24666777
Q ss_pred CEEEEEEe
Q 001387 841 QKIQLYKW 848 (1088)
Q Consensus 841 ~~l~v~~~ 848 (1088)
+.++++..
T Consensus 235 ~~irv~~~ 242 (395)
T PF08596_consen 235 SDIRVFKP 242 (395)
T ss_dssp SEEEEE-T
T ss_pred cceEEEeC
Confidence 77887774
No 147
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=74.99 E-value=1.6e+02 Score=33.54 Aligned_cols=40 Identities=13% Similarity=0.108 Sum_probs=26.1
Q ss_pred EECCCCceEeEEEEEEEcC---CCceEEEEEeeeeCCCCCCCcceEEEEEEEe
Q 001387 760 YPLDTFEYGCSILSCSFSD---DSNVYYCVGTAYVLPEENEPTKGRILVFIVE 809 (1088)
Q Consensus 760 ~~~~~~E~v~si~~~~~~~---~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~ 809 (1088)
+.|--.+.++|++.+.... +..+|+||||=. --|-||+++
T Consensus 168 HD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmd----------p~IeIWDLD 210 (463)
T KOG0270|consen 168 HDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMD----------PEIEIWDLD 210 (463)
T ss_pred cceeccCcchhhhhhhcCCCCCCCcceEEEeccC----------ceeEEeccc
Confidence 3444456778888776632 236899999932 167778776
No 148
>PHA03098 kelch-like protein; Provisional
Probab=74.70 E-value=85 Score=38.00 Aligned_cols=134 Identities=11% Similarity=0.041 Sum_probs=68.5
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccccCeEEEEEC--------CEEEEEEeeecc
Q 001387 781 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAIN--------QKIQLYKWMLRD 852 (1088)
Q Consensus 781 ~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~g~Lv~~~g--------~~l~v~~~~~~~ 852 (1088)
...+++|... .......+..|+...++.+.+......-.-.+.+.++|+|++.-| +.+..|+. .+
T Consensus 343 ~~lyv~GG~~-----~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~--~t 415 (534)
T PHA03098 343 NRIYVIGGIY-----NSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSL--NT 415 (534)
T ss_pred CEEEEEeCCC-----CCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeC--CC
Confidence 5677777532 112345677787776666655443332222344556888877655 23555553 22
Q ss_pred CcccccccccccccceEEEEEEEeCCEEEE-Eeccc------cEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCceE
Q 001387 853 DGTRELQSECGHHGHILALYVQTRGDFIVV-GDLMK------SISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIY 924 (1088)
Q Consensus 853 ~~~~~L~~~~~~~~~~~~~~l~~~~~~I~v-gD~~~------Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~ 924 (1088)
.+++ ..+.........+..+.++.|++ |-... --.+..|+++.++-..++.-+.+++-.++..+++..+
T Consensus 416 -~~W~--~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iy 491 (534)
T PHA03098 416 -NKWS--KGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIY 491 (534)
T ss_pred -Ceee--ecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEE
Confidence 2232 22222111122234456776654 32110 0126778888887777765556666555555544333
No 149
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.64 E-value=2.3e+02 Score=35.24 Aligned_cols=211 Identities=18% Similarity=0.219 Sum_probs=102.2
Q ss_pred cEEEEEECCCEEEEEECCCeEEEEEEcCcEEEEEeecc-CCc-eeEEEEeCCCCCCCCCccEEEEEEecC--C-EEEEEE
Q 001387 490 SVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQ-LEY-EISCLDINPIGENPSYSQIAAVGMWTD--I-SVRIFS 564 (1088)
Q Consensus 490 ~I~~a~~~~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~-l~~-~is~l~~~~~~~~~~~~~~~~vg~w~~--~-~i~i~~ 564 (1088)
.|++++.+...+++....|.++.+.- ++.....++ .+. .+.-+-+. .+.+-.+.||-... . .+.||+
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~---s~~~~~~fqa~~~siv~~L~~~-----~~~~~L~sv~Ed~~~np~llkiw~ 98 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNS---SFQLIRGFQAYEQSIVQFLYIL-----NKQNFLFSVGEDEQGNPVLLKIWD 98 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecc---cceeeehheecchhhhhHhhcc-----cCceEEEEEeecCCCCceEEEEec
Confidence 57777777777777776777776531 222211111 011 12222211 01234455554422 1 678898
Q ss_pred CCCC---C-ceEE-------ecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecCccceeEE
Q 001387 565 LPDL---N-LITK-------EHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLR 633 (1088)
Q Consensus 565 l~~l---~-~~~~-------~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~ 633 (1088)
++.. + +.+. -..+.+..|-+.+.+. ++-..+.||..||.++.|+=|.....-...+-..-|..|+.=-
T Consensus 99 lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs-~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL 177 (933)
T KOG2114|consen 99 LEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVS-EDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGL 177 (933)
T ss_pred ccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEE-ccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceee
Confidence 8532 2 2111 1222234455554332 2356788999999999998664321111112223466776433
Q ss_pred EEEeCCceEEEEecCCceEEEecCCc---EEEeecccccceeeeccCCCCCCCeEEEEeCCeEEEEEEcCCCCeEEEEEe
Q 001387 634 TFSSKNTTHVFAASDRPTVIYSSNKK---LLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIP 710 (1088)
Q Consensus 634 ~~~~~~~~~v~~~~~~p~~i~~~~~~---~~~~~l~~~~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~~~~~~i~ 710 (1088)
.+...+...+|+....-...|.-.++ .....-+.-++.+ ..|+. .. ..|+++..+.|.+...+... +.-.++
T Consensus 178 ~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnC-ss~~~-~t-~qfIca~~e~l~fY~sd~~~--~cfaf~ 252 (933)
T KOG2114|consen 178 ALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNC-SSFSD-GT-YQFICAGSEFLYFYDSDGRG--PCFAFE 252 (933)
T ss_pred EEecCCceeEEEEecceeEEEEecCCCcceeeeccCCcccee-eecCC-CC-ccEEEecCceEEEEcCCCcc--eeeeec
Confidence 34444444477776665444432222 2211111111211 11211 11 14888888999988877532 333445
Q ss_pred CCCc
Q 001387 711 LGEH 714 (1088)
Q Consensus 711 l~~t 714 (1088)
+|+.
T Consensus 253 ~g~k 256 (933)
T KOG2114|consen 253 VGEK 256 (933)
T ss_pred CCCe
Confidence 5544
No 150
>PHA02713 hypothetical protein; Provisional
Probab=74.47 E-value=1.1e+02 Score=37.14 Aligned_cols=153 Identities=16% Similarity=0.168 Sum_probs=77.7
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccccCeEEEEECC-------EEEEEEeeeccC
Q 001387 781 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQ-------KIQLYKWMLRDD 853 (1088)
Q Consensus 781 ~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~g~Lv~~~g~-------~l~v~~~~~~~~ 853 (1088)
...+++|.... .......++.|+...++...+......-.=.+++.++|+|++.-|. .+..|+. ..
T Consensus 304 ~~IYviGG~~~----~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp--~~- 376 (557)
T PHA02713 304 NEIIIAGGYNF----NNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTM--GD- 376 (557)
T ss_pred CEEEEEcCCCC----CCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEEC--CC-
Confidence 56777775311 1112356788887766665554433222223455667777665442 2455553 22
Q ss_pred cccccccccccccceEEEEEEEeCCEEEE-Eeccc---------------------cEEEEEEeccCCeEEEEeccCCCc
Q 001387 854 GTRELQSECGHHGHILALYVQTRGDFIVV-GDLMK---------------------SISLLIYKHEEGAIEERARDYNAN 911 (1088)
Q Consensus 854 ~~~~L~~~~~~~~~~~~~~l~~~~~~I~v-gD~~~---------------------Sv~~~~~~~~~~~l~~~~~D~~~~ 911 (1088)
.. +...+.+.......++.+.+++|++ |-... .-.+..|+++.++-..++.=+.+|
T Consensus 377 ~~--W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r 454 (557)
T PHA02713 377 DK--WKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT 454 (557)
T ss_pred Ce--EEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccc
Confidence 22 3333322222222234456777765 43211 123677999888888777655566
Q ss_pred eeEEEEEeeCceEEEEccCC--cE--EEEeeCCCC
Q 001387 912 WMSAVEILDDDIYLGAENNF--NL--FTVRKNSEG 942 (1088)
Q Consensus 912 ~v~~~~~l~~~~~l~~D~~g--nl--~~l~~~~~~ 942 (1088)
.-.++..+++.-++++..++ .. .+..|+|+.
T Consensus 455 ~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 455 IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCC
Confidence 55455566655444433221 11 245666643
No 151
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=74.31 E-value=74 Score=34.77 Aligned_cols=144 Identities=22% Similarity=0.264 Sum_probs=81.5
Q ss_pred EEEecCcEEEEecCCcceeeeeeCCCCC--cEEEEEE-CCCEEEEEECCCeEEEEEEcC-cEEEEEeeccC-CceeEEEE
Q 001387 462 VQVTSGSVRLVSSTSRELRNEWKSPPGY--SVNVATA-NASQVLLATGGGHLVYLEIGD-GILTEVKHAQL-EYEISCLD 536 (1088)
Q Consensus 462 vQVt~~~i~l~~~~~~~~~~~~~~~~~~--~I~~a~~-~~~~lvv~~~~~~l~~~~~~~-~~l~~~~~~~l-~~~is~l~ 536 (1088)
+-....+||+++..+++.+.+++.+.+. .+..++. .+..++.+.++|.+..+.+.. ++...+....- +..-+|++
T Consensus 45 v~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld 124 (376)
T KOG1188|consen 45 VSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLD 124 (376)
T ss_pred EEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEee
Confidence 3445778999999887777777644332 2444444 466777777888988877643 11111111111 23446887
Q ss_pred eCCCCCCCCCccEEEEEEec---CCEEEEEECCCCCc-eEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEec
Q 001387 537 INPIGENPSYSQIAAVGMWT---DISVRIFSLPDLNL-ITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNM 612 (1088)
Q Consensus 537 ~~~~~~~~~~~~~~~vg~w~---~~~i~i~~l~~l~~-~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~ 612 (1088)
.+- ....++.|+-. +-.+.+|++..-+. +..-.-+..--..++.+.+. +.+.|+-|.-||.+-.|....
T Consensus 125 ~nc------k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~-~pnlLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 125 LNC------KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS-DPNLLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred ccC------cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC-CCCeEEeecccceEEeeecCC
Confidence 742 25677777643 34677888754222 11100000011224444432 345688899999999998754
No 152
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=74.29 E-value=1.2e+02 Score=31.73 Aligned_cols=48 Identities=17% Similarity=0.349 Sum_probs=32.8
Q ss_pred CCeEEEeeecCCeEEEEEeeCCC---CCCCcEEEEeeeccCCceeeeEEec
Q 001387 311 NAVVYIGSSYGDSQLIKLNLQPD---AKGSYVEVLERYVNLGPIVDFCVVD 358 (1088)
Q Consensus 311 ~~~lf~gS~~gds~l~~~~~~~~---~~~~~~~~~~~l~n~~Pi~D~~~~~ 358 (1088)
..+||+|+-+|+=.++.+..-.. +++....++-.-..=|||.++...+
T Consensus 22 ~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d 72 (325)
T KOG0649|consen 22 KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD 72 (325)
T ss_pred ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh
Confidence 34799999999999998885321 1122234454556779999998864
No 153
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=74.26 E-value=1.7e+02 Score=33.52 Aligned_cols=133 Identities=15% Similarity=0.155 Sum_probs=71.2
Q ss_pred cEEEEecCCcceeeeeeCCCCCcEEE-EEECCCEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeEEE-EeCCCCCCCC
Q 001387 468 SVRLVSSTSRELRNEWKSPPGYSVNV-ATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCL-DINPIGENPS 545 (1088)
Q Consensus 468 ~i~l~~~~~~~~~~~~~~~~~~~I~~-a~~~~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l-~~~~~~~~~~ 545 (1088)
.+..++..+++. .|....+..+.. .++++..+++...++.+..|..++|++.-. ..+..++.+- .+
T Consensus 76 ~v~a~d~~tG~~--~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~--~~~~~~~~~~p~v-------- 143 (377)
T TIGR03300 76 TVVALDAETGKR--LWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWR--AKLSSEVLSPPLV-------- 143 (377)
T ss_pred eEEEEEccCCcE--eeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeee--eccCceeecCCEE--------
Confidence 355566554333 344332223322 235577777777678888877666654322 2233333221 11
Q ss_pred CccEEEEEEecCCEEEEEECCCCCceEEecCCCCcC----ceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCcccc
Q 001387 546 YSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEII----PRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTD 619 (1088)
Q Consensus 546 ~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~----p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~ 619 (1088)
....+++++. ++.+..++..+-+.++......... ..+..+. + ..++++..+|.+..+. ..+|++..
T Consensus 144 ~~~~v~v~~~-~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~--~~v~~~~~~g~v~ald--~~tG~~~W 214 (377)
T TIGR03300 144 ANGLVVVRTN-DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D--GGVLVGFAGGKLVALD--LQTGQPLW 214 (377)
T ss_pred ECCEEEEECC-CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C--CEEEEECCCCEEEEEE--ccCCCEee
Confidence 1346677766 8899999988777766544332100 0111222 2 3678899999876554 44555443
No 154
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=73.90 E-value=1.3e+02 Score=32.01 Aligned_cols=207 Identities=16% Similarity=0.136 Sum_probs=101.5
Q ss_pred eEEEEeCCeEEEEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECC
Q 001387 684 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD 763 (1088)
Q Consensus 684 ~l~~~~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~ 763 (1088)
.|++++-..=.|.+++.... ..+.+.+.. |.-++.+...+.++++... .+.++|+.+.+...-.+..
T Consensus 13 ~l~~~D~~~~~i~~~~~~~~-~~~~~~~~~-~~G~~~~~~~g~l~v~~~~-----------~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 13 RLYWVDIPGGRIYRVDPDTG-EVEVIDLPG-PNGMAFDRPDGRLYVADSG-----------GIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEEETTTTEEEEEETTTT-EEEEEESSS-EEEEEEECTTSEEEEEETT-----------CEEEEETTTTEEEEEEEEE
T ss_pred EEEEEEcCCCEEEEEECCCC-eEEEEecCC-CceEEEEccCCEEEEEEcC-----------ceEEEecCCCcEEEEeecc
Confidence 34444422223344443322 233466666 7778887334666665432 3466688877655444432
Q ss_pred ----CCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cC-eEEE
Q 001387 764 ----TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NG-KLLA 837 (1088)
Q Consensus 764 ----~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g-~Lv~ 837 (1088)
+...++.++ +..+++ +.+++..... ......|+++.++-. ++.+.+... + ..+..|+-- ++ .|++
T Consensus 80 ~~~~~~~~~ND~~---vd~~G~--ly~t~~~~~~-~~~~~~g~v~~~~~~-~~~~~~~~~-~-~~pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 80 DGGVPFNRPNDVA---VDPDGN--LYVTDSGGGG-ASGIDPGSVYRIDPD-GKVTVVADG-L-GFPNGIAFSPDGKTLYV 150 (246)
T ss_dssp TTCSCTEEEEEEE---E-TTS---EEEEEECCBC-TTCGGSEEEEEEETT-SEEEEEEEE-E-SSEEEEEEETTSSEEEE
T ss_pred CCCcccCCCceEE---EcCCCC--EEEEecCCCc-cccccccceEEECCC-CeEEEEecC-c-ccccceEECCcchheee
Confidence 334444443 343333 5556554321 111112999888776 677666543 2 233444432 33 5665
Q ss_pred EE--CCEEEEEEeeeccCcccccccc---ccccc---ceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCC
Q 001387 838 AI--NQKIQLYKWMLRDDGTRELQSE---CGHHG---HILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYN 909 (1088)
Q Consensus 838 ~~--g~~l~v~~~~~~~~~~~~L~~~---~~~~~---~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~ 909 (1088)
+- +++|+.|.++. .+ .++... ..... .+-.+.+...| .|+|++...+- +.+|+++...+..+. -+.
T Consensus 151 ~ds~~~~i~~~~~~~--~~-~~~~~~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~-I~~~~p~G~~~~~i~-~p~ 224 (246)
T PF08450_consen 151 ADSFNGRIWRFDLDA--DG-GELSNRRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGR-IVVFDPDGKLLREIE-LPV 224 (246)
T ss_dssp EETTTTEEEEEEEET--TT-CCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTE-EEEEETTSCEEEEEE--SS
T ss_pred cccccceeEEEeccc--cc-cceeeeeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCE-EEEECCCccEEEEEc-CCC
Confidence 53 46676666641 22 112111 11111 12233444444 57888876664 567898854444443 333
Q ss_pred CceeEEEEEe
Q 001387 910 ANWMSAVEIL 919 (1088)
Q Consensus 910 ~~~v~~~~~l 919 (1088)
+ .++++.|-
T Consensus 225 ~-~~t~~~fg 233 (246)
T PF08450_consen 225 P-RPTNCAFG 233 (246)
T ss_dssp S-SEEEEEEE
T ss_pred C-CEEEEEEE
Confidence 3 67777774
No 155
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=73.59 E-value=1.6e+02 Score=33.16 Aligned_cols=82 Identities=12% Similarity=0.110 Sum_probs=49.5
Q ss_pred CCCeEEEEeCCeEEEEEEcCCCC-eEEEEEeCC-CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEE
Q 001387 681 FPDSLAIAKEGELTIGTIDDIQK-LHIRSIPLG-EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIS 758 (1088)
Q Consensus 681 ~~~~l~~~~~~~l~i~~l~~~~~-~~~~~i~l~-~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~ 758 (1088)
.|+|+-++++++=..|++.+.+. -..-.||=- .-+.++.|.|..+.|++-++-. .++++.++.+|..+.
T Consensus 354 sPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD---------~t~kiWs~~~~~~~k 424 (459)
T KOG0272|consen 354 SPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD---------NTVKIWSTRTWSPLK 424 (459)
T ss_pred CCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccC---------cceeeecCCCcccch
Confidence 46787777754444445544321 123344432 2467899999778887766532 589999999998876
Q ss_pred EEECCCCceEeEEE
Q 001387 759 TYPLDTFEYGCSIL 772 (1088)
Q Consensus 759 ~~~~~~~E~v~si~ 772 (1088)
+..=-++ .|.|+.
T Consensus 425 sLaGHe~-kV~s~D 437 (459)
T KOG0272|consen 425 SLAGHEG-KVISLD 437 (459)
T ss_pred hhcCCcc-ceEEEE
Confidence 5432222 344443
No 156
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=72.17 E-value=1.4e+02 Score=31.82 Aligned_cols=134 Identities=16% Similarity=0.151 Sum_probs=77.5
Q ss_pred CcEEEEecCCcceeeeeeCCCCCcEEEEEECCCEEEEEE--CCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCC
Q 001387 467 GSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLAT--GGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENP 544 (1088)
Q Consensus 467 ~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~~~~lvv~~--~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~ 544 (1088)
+.+++-+..+.+..+. .+.....+..++++++=-+++. .++++.+-.+++++- +..++-...|-++++.|
T Consensus 172 ktvKvWnl~~~~l~~~-~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~--lysl~a~~~v~sl~fsp----- 243 (315)
T KOG0279|consen 172 KTVKVWNLRNCQLRTT-FIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN--LYSLEAFDIVNSLCFSP----- 243 (315)
T ss_pred ceEEEEccCCcchhhc-cccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce--eEeccCCCeEeeEEecC-----
Confidence 4556666654222222 2223334666667644323332 346677767766432 22233445688888875
Q ss_pred CCccEEEEEEecCCEEEEEECCCCCceEEecC---C---CCcCceeEEeeeecCceEEEEEeCCCcEEEEEEe
Q 001387 545 SYSQIAAVGMWTDISVRIFSLPDLNLITKEHL---G---GEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLN 611 (1088)
Q Consensus 545 ~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l---~---~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~ 611 (1088)
....++.++ +.+|.||++..-..+..-.+ + ....|+++.++-..+..+||.|..||.+..+++.
T Consensus 244 -nrywL~~at--~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 244 -NRYWLCAAT--ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred -CceeEeecc--CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 245555554 45699999975333322111 1 1135777776766677899999999999888764
No 157
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=72.10 E-value=1.2e+02 Score=32.65 Aligned_cols=156 Identities=19% Similarity=0.219 Sum_probs=83.0
Q ss_pred ceEEEEEeeeeCCCCCCC--cceEEEEEEEeCCeEE---EEEEEEecCc---eeEeccccCe---EEEEECCEEEEEEee
Q 001387 781 NVYYCVGTAYVLPEENEP--TKGRILVFIVEDGKLQ---LIAEKETKGA---VYSLNAFNGK---LLAAINQKIQLYKWM 849 (1088)
Q Consensus 781 ~~~i~VGT~~~~~~e~~~--~~Gri~v~~i~~~kl~---~~~~~~~~g~---v~ai~~~~g~---Lv~~~g~~l~v~~~~ 849 (1088)
.+.+++||-....+...+ ..|++++|.+.+.++. .+-.+++.+. --++.+.+|. +.+-+-..|.+|+.+
T Consensus 24 ~~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~ 103 (339)
T KOG0280|consen 24 RNVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRND 103 (339)
T ss_pred cceEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeec
Confidence 469999998765442222 5799999999865433 2333333221 1233333443 333344567777764
Q ss_pred eccCcccccccccccccce---EEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEe---ccCCCceeEEEEEeeCce
Q 001387 850 LRDDGTRELQSECGHHGHI---LALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERA---RDYNANWMSAVEILDDDI 923 (1088)
Q Consensus 850 ~~~~~~~~L~~~~~~~~~~---~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~---~D~~~~~v~~~~~l~~~~ 923 (1088)
..+ ....|.+........ ..+.++..+..|+++|..-++..+... ...+.-++ -...+.|+.+......+.
T Consensus 104 ~~~-ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t--~~~le~vq~wk~He~E~Wta~f~~~~pnl 180 (339)
T KOG0280|consen 104 EDE-SSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYET--EMVLEKVQTWKVHEFEAWTAKFSDKEPNL 180 (339)
T ss_pred cce-eeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecc--eeeeeecccccccceeeeeeecccCCCce
Confidence 321 122233332222222 233445567889999999999855332 22222211 122346765544444455
Q ss_pred EEEEccCCcEEEEeeC
Q 001387 924 YLGAENNFNLFTVRKN 939 (1088)
Q Consensus 924 ~l~~D~~gnl~~l~~~ 939 (1088)
+..+-.+|.|..++.-
T Consensus 181 vytGgDD~~l~~~D~R 196 (339)
T KOG0280|consen 181 VYTGGDDGSLSCWDIR 196 (339)
T ss_pred EEecCCCceEEEEEec
Confidence 5566678888887754
No 158
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.91 E-value=1.4e+02 Score=31.51 Aligned_cols=77 Identities=19% Similarity=0.319 Sum_probs=42.9
Q ss_pred cCCeEEEEEeeCCCCCCCcEEEEeeeccCCceeeeEEeccCCCCCceEEEEeeCCCCceEEEEecCCceeEEEeeeCCCc
Q 001387 320 YGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI 399 (1088)
Q Consensus 320 ~gds~l~~~~~~~~~~~~~~~~~~~l~n~~Pi~D~~~~~~~~~~~~~l~~~sG~g~~g~L~~lr~gi~~~~~~~~~l~~v 399 (1088)
.|++.|+-++..+ + .. +..+.++.----+.|++--+. .+.++++|+| .|+|+++--+.+...+..++ +..
T Consensus 35 ~G~G~L~ile~~~-~-~g-i~e~~s~d~~D~LfdV~Wse~---~e~~~~~a~G---DGSLrl~d~~~~s~Pi~~~k-EH~ 104 (311)
T KOG0277|consen 35 AGNGRLFILEVTD-P-KG-IQECQSYDTEDGLFDVAWSEN---HENQVIAASG---DGSLRLFDLTMPSKPIHKFK-EHK 104 (311)
T ss_pred ccCceEEEEecCC-C-CC-eEEEEeeecccceeEeeecCC---CcceEEEEec---CceEEEeccCCCCcchhHHH-hhh
Confidence 3455555555421 1 11 556666665555667665443 4578999998 47788887655554443321 122
Q ss_pred ceEEEee
Q 001387 400 KGMWSLR 406 (1088)
Q Consensus 400 ~~iw~l~ 406 (1088)
+.++++.
T Consensus 105 ~EV~Svd 111 (311)
T KOG0277|consen 105 REVYSVD 111 (311)
T ss_pred hheEEec
Confidence 3455553
No 159
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=71.78 E-value=1e+02 Score=34.26 Aligned_cols=154 Identities=18% Similarity=0.171 Sum_probs=82.7
Q ss_pred ecCceeEeccc--cCeEEEEEC-CEEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEEEEeccccEEEEEEecc
Q 001387 821 TKGAVYSLNAF--NGKLLAAIN-QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHE 897 (1088)
Q Consensus 821 ~~g~v~ai~~~--~g~Lv~~~g-~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~ 897 (1088)
+.++|.++..- ..+|+.+.| +++++++++.+ .-+.....+..-+..++.+-.+..|.-|-...++-+ |++.
T Consensus 114 H~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te----Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~l--wdpk 187 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE----TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRL--WDPK 187 (480)
T ss_pred CCCcEEEEEecCCCceEEecCCCceEEeeccCCC----CcceeecCCccEEEEEEECCCcchhhccccCCeEEE--ecCC
Confidence 45677776522 236888887 56778665311 112111112222333444445667777777777655 6765
Q ss_pred CCeEEEEeccCCCceeEEEEEe----eCc--eEEEEccCCcEEEEeeCCCCCCcccccceeEEEEEEcCCccceEEeeee
Q 001387 898 EGAIEERARDYNANWMSAVEIL----DDD--IYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSL 971 (1088)
Q Consensus 898 ~~~l~~~~~D~~~~~v~~~~~l----~~~--~~l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l 971 (1088)
.++..--+=--+..|+++..+- +.+ .+..+.++|++.+...... +.+. ...-.-..|++++-|
T Consensus 188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~--------~~~~-~lsgHT~~VTCvrwG-- 256 (480)
T KOG0271|consen 188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG--------TCVR-TLSGHTASVTCVRWG-- 256 (480)
T ss_pred CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc--------eEEE-EeccCccceEEEEEc--
Confidence 5443322223466788876542 222 3566778999999986531 1211 122222456776542
Q ss_pred eecCCCCCCCCccEEEE-EcccccEEEEEecC
Q 001387 972 VMRLPDSDVGQIPTVIF-GTVNGVIGVIASLP 1002 (1088)
Q Consensus 972 ~~~~~~~~~~~~~~~l~-~t~~G~i~~l~~l~ 1002 (1088)
+..+|| |+-|+.|-+....+
T Consensus 257 -----------G~gliySgS~DrtIkvw~a~d 277 (480)
T KOG0271|consen 257 -----------GEGLIYSGSQDRTIKVWRALD 277 (480)
T ss_pred -----------CCceEEecCCCceEEEEEccc
Confidence 233444 57788887766654
No 160
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=71.21 E-value=3.2e+02 Score=35.47 Aligned_cols=93 Identities=19% Similarity=0.204 Sum_probs=67.3
Q ss_pred EEEEEEEe-CCeEEEEEEEEecCceeEeccccCeEEEE-ECCEEEEEEeeeccCccccc--ccccccccceEEEEEEEeC
Q 001387 802 RILVFIVE-DGKLQLIAEKETKGAVYSLNAFNGKLLAA-INQKIQLYKWMLRDDGTREL--QSECGHHGHILALYVQTRG 877 (1088)
Q Consensus 802 ri~v~~i~-~~kl~~~~~~~~~g~v~ai~~~~g~Lv~~-~g~~l~v~~~~~~~~~~~~L--~~~~~~~~~~~~~~l~~~~ 877 (1088)
.|+++.++ +..|.=++-.+.+-=|+++..+++.|++| +=+.+.+..|+.+ ..+| ..+.+-....+++..-+.|
T Consensus 1117 KI~v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqee---p~rlsL~srd~~~l~v~s~EFLVdg 1193 (1366)
T KOG1896|consen 1117 KIIVRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEE---PYRLSLLSRDFEPLNVYSTEFLVDG 1193 (1366)
T ss_pred EEEEEEeccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccC---ceEEEEeecCCchhhceeeeeEEcC
Confidence 78899994 55677677778888888999999998877 4477888888522 2333 3333323334566666777
Q ss_pred C--EEEEEeccccEEEEEEecc
Q 001387 878 D--FIVVGDLMKSISLLIYKHE 897 (1088)
Q Consensus 878 ~--~I~vgD~~~Sv~~~~~~~~ 897 (1088)
+ ..+|.|+.+-+.++.|.++
T Consensus 1194 ~~L~flvsDa~rNi~vy~Y~Pe 1215 (1366)
T KOG1896|consen 1194 SNLSFLVSDADRNIHVYMYAPE 1215 (1366)
T ss_pred CeeEEEEEcCCCcEEEEEeCCC
Confidence 6 6789999999999999986
No 161
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=71.19 E-value=1.5e+02 Score=36.05 Aligned_cols=109 Identities=17% Similarity=0.201 Sum_probs=64.7
Q ss_pred eeeeecCCCeEEEEecCcEEEEecCCcceeeeeeCCCC----------CcEEEEEEC--CCEEEEEECCCeEEEEEEcCc
Q 001387 451 LFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPG----------YSVNVATAN--ASQVLLATGGGHLVYLEIGDG 518 (1088)
Q Consensus 451 i~~~~~~~~~ivQVt~~~i~l~~~~~~~~~~~~~~~~~----------~~I~~a~~~--~~~lvv~~~~~~l~~~~~~~~ 518 (1088)
|++|-..+-.-++++|++-.+.++..-+.+.-|+.-.| .+|++.+.+ +.+++-...++.+.+-.+..+
T Consensus 530 ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~ 609 (707)
T KOG0263|consen 530 IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG 609 (707)
T ss_pred hhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC
Confidence 55555555566667776666665543334445553222 245555544 556665555677777677665
Q ss_pred EEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCC
Q 001387 519 ILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD 567 (1088)
Q Consensus 519 ~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~ 567 (1088)
++...- +.-...|.+++++. .+.++++|.- |+++++|++..
T Consensus 610 ~~v~~l-~~Ht~ti~SlsFS~------dg~vLasgg~-DnsV~lWD~~~ 650 (707)
T KOG0263|consen 610 SLVKQL-KGHTGTIYSLSFSR------DGNVLASGGA-DNSVRLWDLTK 650 (707)
T ss_pred cchhhh-hcccCceeEEEEec------CCCEEEecCC-CCeEEEEEchh
Confidence 432211 11156678888853 3678888876 99999998753
No 162
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=70.98 E-value=75 Score=37.75 Aligned_cols=177 Identities=13% Similarity=0.192 Sum_probs=88.8
Q ss_pred EEEEEEeCCCceEEEEEEC-CCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEE-----
Q 001387 744 HFVRLLDDQTFEFISTYPL-DTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIA----- 817 (1088)
Q Consensus 744 s~l~lid~~t~~~i~~~~~-~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~----- 817 (1088)
++|++.++......+.-.+ .-..++.|+... .++..+++..+. -++|++|++.-+--++++
T Consensus 95 tTVK~W~~~~~~~~c~stir~H~DYVkcla~~----ak~~~lvaSgGL---------D~~IflWDin~~~~~l~~s~n~~ 161 (735)
T KOG0308|consen 95 TTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYI----AKNNELVASGGL---------DRKIFLWDINTGTATLVASFNNV 161 (735)
T ss_pred ceEEEeecccCcchhHhhhhcccchheeeeec----ccCceeEEecCC---------CccEEEEEccCcchhhhhhcccc
Confidence 5777777643211110011 123456666553 234445544433 358999999732111222
Q ss_pred -EE----EecCceeEecccc-CeEEEEEC--CEEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEEEEeccccE
Q 001387 818 -EK----ETKGAVYSLNAFN-GKLLAAIN--QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSI 889 (1088)
Q Consensus 818 -~~----~~~g~v~ai~~~~-g~Lv~~~g--~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv 889 (1088)
.. ..+.+||+++.-+ |.++++-| +.|++|+ .+. .+|+++...+...+-++-+.-.|++++-|-.---+
T Consensus 162 t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wD--prt--~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtI 237 (735)
T KOG0308|consen 162 TVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWD--PRT--CKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTI 237 (735)
T ss_pred ccccCCCCCccceeeeecCCcceEEEecCcccceEEec--ccc--ccceeeeeccccceEEEEEcCCCCeEeecCCCceE
Confidence 11 2345888888664 56777666 3456655 332 24444433343344444445567777766555545
Q ss_pred EEEEEeccCCeEEEEeccCCCceeEEEEEeeCceEEEEccCCcEEEEeeC
Q 001387 890 SLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKN 939 (1088)
Q Consensus 890 ~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~ 939 (1088)
-+.....+.-.....+ .....|...+. -+-..+..+|++||+..-...
T Consensus 238 rlWdLgqQrCl~T~~v-H~e~VWaL~~~-~sf~~vYsG~rd~~i~~Tdl~ 285 (735)
T KOG0308|consen 238 RLWDLGQQRCLATYIV-HKEGVWALQSS-PSFTHVYSGGRDGNIYRTDLR 285 (735)
T ss_pred EeeeccccceeeeEEe-ccCceEEEeeC-CCcceEEecCCCCcEEecccC
Confidence 5543322211122222 22236654443 111347889999999876543
No 163
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=70.53 E-value=1.3e+02 Score=30.73 Aligned_cols=95 Identities=18% Similarity=0.126 Sum_probs=58.6
Q ss_pred eEEEEEeCCC--ccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCc
Q 001387 704 LHIRSIPLGE--HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSN 781 (1088)
Q Consensus 704 ~~~~~i~l~~--tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~ 781 (1088)
-++..+.+.. ..+.++.+|..+.|+|+.... ...+.|+|.+ .+.+.. |+. ....++. | .. ..
T Consensus 49 ~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~--------~~~v~lyd~~-~~~i~~--~~~-~~~n~i~-w--sP-~G 112 (194)
T PF08662_consen 49 IPVESIELKKEGPIHDVAWSPNGNEFAVIYGSM--------PAKVTLYDVK-GKKIFS--FGT-QPRNTIS-W--SP-DG 112 (194)
T ss_pred CccceeeccCCCceEEEEECcCCCEEEEEEccC--------CcccEEEcCc-ccEeEe--ecC-CCceEEE-E--CC-CC
Confidence 3556666643 478899999999999886432 2478999885 444443 333 2333332 3 32 35
Q ss_pred eEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecC
Q 001387 782 VYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKG 823 (1088)
Q Consensus 782 ~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g 823 (1088)
+++++|..- ...|.+.+|++. +.+.+...+...
T Consensus 113 ~~l~~~g~~-------n~~G~l~~wd~~--~~~~i~~~~~~~ 145 (194)
T PF08662_consen 113 RFLVLAGFG-------NLNGDLEFWDVR--KKKKISTFEHSD 145 (194)
T ss_pred CEEEEEEcc-------CCCcEEEEEECC--CCEEeeccccCc
Confidence 677776531 245999999986 445555555544
No 164
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.95 E-value=70 Score=35.85 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=35.0
Q ss_pred eccCCCCCCCeEEEEe-CCeEEEEEEcCCCC-eEEEEEeCCCccCeEEEecCCCEEEEE
Q 001387 674 CPFNSAAFPDSLAIAK-EGELTIGTIDDIQK-LHIRSIPLGEHPRRICHQEQSRTFAIC 730 (1088)
Q Consensus 674 ~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~-~~~~~i~l~~tp~~i~y~~~~~~~~v~ 730 (1088)
+.+.-......+++.+ ++.+.|......+. ..+++..++ ....+.|.|+++..+=.
T Consensus 285 Ssl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~-~VT~ltF~Pdsr~~~sv 342 (398)
T KOG0771|consen 285 SSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLG-FVTGLTFSPDSRYLASV 342 (398)
T ss_pred eeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhhee-eeeeEEEcCCcCccccc
Confidence 3333444455566655 77888888777654 355666655 77778888877655443
No 165
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=69.72 E-value=1.5e+02 Score=35.64 Aligned_cols=97 Identities=13% Similarity=0.153 Sum_probs=63.3
Q ss_pred EEEeCCeEEEEEEcCCCCeEEEEEe----CCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEE
Q 001387 686 AIAKEGELTIGTIDDIQKLHIRSIP----LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYP 761 (1088)
Q Consensus 686 ~~~~~~~l~i~~l~~~~~~~~~~i~----l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~ 761 (1088)
..+.+..++|..+..... .|.++ =.+++-|+..+|....++..|++. .|.++|-.+++.+.+ -
T Consensus 613 t~cQDrnirif~i~sgKq--~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdk----------tl~~~Df~sgEcvA~-m 679 (1080)
T KOG1408|consen 613 TVCQDRNIRIFDIESGKQ--VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDK----------TLCFVDFVSGECVAQ-M 679 (1080)
T ss_pred EEecccceEEEeccccce--eeeecccccCCCceEEEEECCCccEEEEeecCC----------ceEEEEeccchhhhh-h
Confidence 335578899988886532 22222 135788888888766666666653 688888878877654 3
Q ss_pred CCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEe
Q 001387 762 LDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE 809 (1088)
Q Consensus 762 ~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~ 809 (1088)
+...|.++.++ |..+=++.|-|. .-|.|+||++-
T Consensus 680 ~GHsE~VTG~k---F~nDCkHlISvs-----------gDgCIFvW~lp 713 (1080)
T KOG1408|consen 680 TGHSEAVTGVK---FLNDCKHLISVS-----------GDGCIFVWKLP 713 (1080)
T ss_pred cCcchheeeee---ecccchhheeec-----------CCceEEEEECc
Confidence 56678877765 344445555443 34899999886
No 166
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=69.30 E-value=78 Score=34.69 Aligned_cols=116 Identities=19% Similarity=0.177 Sum_probs=79.2
Q ss_pred EeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEe
Q 001387 709 IPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGT 788 (1088)
Q Consensus 709 i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT 788 (1088)
+||..-.+-++.+|.....++..-+. ...+.++|+.+.+....+.-+++.+.+-=.. |..+++-+++ |
T Consensus 1 ~~lP~RgH~~a~~p~~~~avafaRRP--------G~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~--fs~dG~~Lyt--T 68 (305)
T PF07433_consen 1 IPLPARGHGVAAHPTRPEAVAFARRP--------GTFALVFDCRTGQLLQRLWAPPGRHFYGHGV--FSPDGRLLYT--T 68 (305)
T ss_pred CCCCccccceeeCCCCCeEEEEEeCC--------CcEEEEEEcCCCceeeEEcCCCCCEEecCEE--EcCCCCEEEE--e
Confidence 35666677888899777666655543 3577888999999888877777777554322 3444443333 3
Q ss_pred eeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecC-ceeEeccc-cC-eEEEEECC
Q 001387 789 AYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKG-AVYSLNAF-NG-KLLAAINQ 841 (1088)
Q Consensus 789 ~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g-~v~ai~~~-~g-~Lv~~~g~ 841 (1088)
. ++.+..+|+|=||+.. ..++.+.+...-| .++.+.-. +| .|++|.|.
T Consensus 69 E----nd~~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGG 119 (305)
T PF07433_consen 69 E----NDYETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGG 119 (305)
T ss_pred c----cccCCCcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCC
Confidence 3 3456799999999997 5788888887765 45555544 44 68888885
No 167
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=68.76 E-value=1.1e+02 Score=36.46 Aligned_cols=203 Identities=14% Similarity=0.076 Sum_probs=99.8
Q ss_pred CceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEE-----EEEEEEecCceeEeccccC--eEEEEEC-CEEEEEEeeec
Q 001387 780 SNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQ-----LIAEKETKGAVYSLNAFNG--KLLAAIN-QKIQLYKWMLR 851 (1088)
Q Consensus 780 ~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~-----~~~~~~~~g~v~ai~~~~g--~Lv~~~g-~~l~v~~~~~~ 851 (1088)
+++.|+|+- ..|.|.+|+....+.+ +..-.-+.++|..+....| .||-+.| +++++|+.+..
T Consensus 63 ~eHiLavad----------E~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 63 KEHILAVAD----------EDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccceEEEec----------CCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 467788774 2478888887744333 2333456788999888865 4676666 77888775321
Q ss_pred cC-cc-------cccccccccccceEEEEEEEeCCEEEEEeccccE--EEEE--------EeccCCeEEEEec-------
Q 001387 852 DD-GT-------RELQSECGHHGHILALYVQTRGDFIVVGDLMKSI--SLLI--------YKHEEGAIEERAR------- 906 (1088)
Q Consensus 852 ~~-~~-------~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv--~~~~--------~~~~~~~l~~~~~------- 906 (1088)
.. |. ..+...|+......+...--.++-|++-|++-.. .+.+ ++..+....++.+
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 10 10 0111223333322222222234556777766554 1111 1111111111111
Q ss_pred --cCCCceeEEEEEeeCceEEEEcc-CCcEEEEeeCCCCCCcccccceeEEEEEEcCCccc-eEEeeeeeecCCCCCCCC
Q 001387 907 --DYNANWMSAVEILDDDIYLGAEN-NFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVN-RFRHGSLVMRLPDSDVGQ 982 (1088)
Q Consensus 907 --D~~~~~v~~~~~l~~~~~l~~D~-~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~-~~~~~~l~~~~~~~~~~~ 982 (1088)
....-.||.+.|.|+++++.+-. +|.|-+++.-..... .+.++...-.+...-. +.-..+|.. ...
T Consensus 213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~----~r~ep~~~~~~~t~skrs~G~~nL~l------Dss 282 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA----YRQEPRGSDKYPTHSKRSVGQVNLIL------DSS 282 (720)
T ss_pred ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc----cccCCCcccCccCcccceeeeEEEEe------cCC
Confidence 11112467788889988775544 899988876543221 1222211111111111 111112221 123
Q ss_pred ccEEEEEcccccEEEEEecC
Q 001387 983 IPTVIFGTVNGVIGVIASLP 1002 (1088)
Q Consensus 983 ~~~~l~~t~~G~i~~l~~l~ 1002 (1088)
+..++..+.|++|+++--.+
T Consensus 283 Gt~L~AsCtD~sIy~ynm~s 302 (720)
T KOG0321|consen 283 GTYLFASCTDNSIYFYNMRS 302 (720)
T ss_pred CCeEEEEecCCcEEEEeccc
Confidence 45667778899999776654
No 168
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=68.59 E-value=2.6e+02 Score=33.47 Aligned_cols=243 Identities=11% Similarity=0.112 Sum_probs=126.4
Q ss_pred EEEEEEecCCCcccEEEEcCCEEEEEEeCCCC-eEEEEEEEeeeeEeEEeeec----cCCCCccEEEEEeCcCeEEEEEE
Q 001387 18 HSCVGNFTSPQELNLIIAKCTRIEIHLLTPQG-LQPMLDVPIYGRIATLELFR----PHGEAQDFLFIATERYKFCVLQW 92 (1088)
Q Consensus 18 ~av~~~f~~~~~~~Lvv~k~~~le~y~~~~~~-L~~~~~~~l~~~i~~i~~~r----~~~~~~d~L~v~~~~~~~~il~~ 92 (1088)
||+.--=+.|+..+|++|-+++|-+|..++.+ |+.+..+. .+|-.++--+ +...+-|-++|+-...-=-+|+|
T Consensus 13 hci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHK--DtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkY 90 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHK--DTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKY 90 (1081)
T ss_pred cchheeEECCCCceEEEecCCEEEEEeCCCccccccccccc--ceEEEEEEccCCceeccCCCceeEEEecccccceeee
Confidence 34443334577899999999999999998765 33333221 2333333322 22234455555554444455566
Q ss_pred eCCCCcEEEEEee------------ec--cCCCCc------cCCCCCeEEECCCCCEEEEEecCCeEEEEeCCCCCcccc
Q 001387 93 DAESSELITRAMG------------DV--SDRIGR------PTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKE 152 (1088)
Q Consensus 93 ~~~~~~~~t~s~~------------~~--~~~~~r------~~~~~~~l~vdp~~r~~~~~~~~~~l~i~p~~~~~~~~~ 152 (1088)
... ..+.+.+-. .| +.+... -...-.-++=.-+|.+.++...+|.+.+-.-..+.
T Consensus 91 SH~-D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEe---- 165 (1081)
T KOG1538|consen 91 SHN-DAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEE---- 165 (1081)
T ss_pred ccC-CeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCc----
Confidence 432 223333221 11 111000 00000123335567777888888887775222111
Q ss_pred ceeccc---CCceeEEEEeecCC---CCcEEEEEEEecCCc-ceEEEEEEeccCCCeeeecccccccCCCCCEEEecCCC
Q 001387 153 AFNIRL---EELQVLDIKFLYGC---AKPTIVVLYQDNKDA-RHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPP 225 (1088)
Q Consensus 153 ~~~i~l---~~~~i~d~~fl~~~---~~p~laiL~~~~~~~-~~l~~y~~~~~~~~~~~~~~~~~~lp~~~~~liplp~~ 225 (1088)
.-.|.- +..+|..+||-+.. .+.++|+. +| ..+.+|.++-. +.. ...+|..|+..|--+|
T Consensus 166 k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~-----DW~qTLSFy~LsG~---~Ig---k~r~L~FdP~CisYf~-- 232 (1081)
T KOG1538|consen 166 KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVA-----DWGQTLSFYQLSGK---QIG---KDRALNFDPCCISYFT-- 232 (1081)
T ss_pred ceEEeCCCCCCCCceEEEecCCCCCCccceEEEE-----eccceeEEEEecce---eec---ccccCCCCchhheecc--
Confidence 112221 23578899997532 34456663 23 35778887642 221 2256788888777777
Q ss_pred CCceEEEeCC--eEEEEcCCceeee---ecCCceeeeeeEEecCCCEEEEEcCCcCeEEEEE
Q 001387 226 LCGVLIIGEE--TIVYCSANAFKAI---PIRPSITKAYGRVDADGSRYLLGDHAGLLHLLVI 282 (1088)
Q Consensus 226 ~~G~lv~~~~--~i~y~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ll~~~~G~l~~l~l 282 (1088)
+|-++++|.. .+.++...+..-- ....++|+-. ..+++..+.++-.||.+.-..+
T Consensus 233 NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~--~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 233 NGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQ--AKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred CCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEE--EccCCceEEEEEccCeeehhhh
Confidence 3556666544 4455555552211 1344555542 3345566778888887754443
No 169
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=67.62 E-value=1.8e+02 Score=31.27 Aligned_cols=250 Identities=19% Similarity=0.229 Sum_probs=0.0
Q ss_pred eeeecCCceeeeeeEEecCCCEEEEEcCCcCeEEEEEE-ecCcEEeeEEEEEcCccccceEEEEecCCeEEEeeecCCeE
Q 001387 246 KAIPIRPSITKAYGRVDADGSRYLLGDHAGLLHLLVIT-HEKEKVTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQ 324 (1088)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~G~l~~l~l~-~~~~~v~~~~i~~~~~~~~~s~l~~l~~~~lf~gS~~gds~ 324 (1088)
..+|+|.. |...|...+++..+.-+--+-..-...+. .|.+....++=+..+....-||..+++++++.-||--.-.-
T Consensus 91 haipl~s~-WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCa 169 (343)
T KOG0286|consen 91 HAIPLPSS-WVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCA 169 (343)
T ss_pred eEEecCce-eEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEE
Q ss_pred EEEEeeCCCCCCCcEEEEeeeccCCceeeeEEeccCCCCCceEEEEeeCCCCceEEEEecCCceeEEEeeeCCCcceEEE
Q 001387 325 LIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWS 404 (1088)
Q Consensus 325 l~~~~~~~~~~~~~~~~~~~l~n~~Pi~D~~~~~~~~~~~~~l~~~sG~g~~g~L~~lr~gi~~~~~~~~~l~~v~~iw~ 404 (1088)
|+-++.. ..+...---.|-|..+.+.++. ...++.+|--+...|.-+|.| .......-.-..|..+-.
T Consensus 170 lWDie~g-------~~~~~f~GH~gDV~slsl~p~~----~ntFvSg~cD~~aklWD~R~~-~c~qtF~ghesDINsv~f 237 (343)
T KOG0286|consen 170 LWDIETG-------QQTQVFHGHTGDVMSLSLSPSD----GNTFVSGGCDKSAKLWDVRSG-QCVQTFEGHESDINSVRF 237 (343)
T ss_pred EEEcccc-------eEEEEecCCcccEEEEecCCCC----CCeEEecccccceeeeeccCc-ceeEeecccccccceEEE
Q ss_pred eecCCCCCCccEEEEEecCceEEEEecCCCceeeeeecceeccccceeeeecCCCeEEEEecCcEEEEecCCcceeeeee
Q 001387 405 LRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWK 484 (1088)
Q Consensus 405 l~~~~~~~~~~~lilS~~~~T~vl~~~~~~~~~e~~~~~f~~~~~Ti~~~~~~~~~ivQVt~~~i~l~~~~~~~~~~~~~ 484 (1088)
.+.. ..|.--|.....++|.+..+.++...+..........+++..-+
T Consensus 238 fP~G-----~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SG--------------------------- 285 (343)
T KOG0286|consen 238 FPSG-----DAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSG--------------------------- 285 (343)
T ss_pred ccCC-----CeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccc---------------------------
Q ss_pred CCCCCcEEEEEECCCEEEE--EECCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEE
Q 001387 485 SPPGYSVNVATANASQVLL--ATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRI 562 (1088)
Q Consensus 485 ~~~~~~I~~a~~~~~~lvv--~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i 562 (1088)
++..|-.+++.+-| ++.+..+-.|. --+..|||+.+.| .+..++-|.| |..++|
T Consensus 286 -----RlLfagy~d~~c~vWDtlk~e~vg~L~------------GHeNRvScl~~s~------DG~av~TgSW-Ds~lri 341 (343)
T KOG0286|consen 286 -----RLLFAGYDDFTCNVWDTLKGERVGVLA------------GHENRVSCLGVSP------DGMAVATGSW-DSTLRI 341 (343)
T ss_pred -----cEEEeeecCCceeEeeccccceEEEee------------ccCCeeEEEEECC------CCcEEEecch-hHheee
Q ss_pred EE
Q 001387 563 FS 564 (1088)
Q Consensus 563 ~~ 564 (1088)
|+
T Consensus 342 W~ 343 (343)
T KOG0286|consen 342 WA 343 (343)
T ss_pred cC
No 170
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.83 E-value=27 Score=38.88 Aligned_cols=110 Identities=18% Similarity=0.214 Sum_probs=65.9
Q ss_pred ccCeEEEecCCC-EEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeC
Q 001387 714 HPRRICHQEQSR-TFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVL 792 (1088)
Q Consensus 714 tp~~i~y~~~~~-~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~ 792 (1088)
..|-++++|..+ ++.++... ..|+++|-.+-.++.+|.... .+-|+ .|-+ +..++|--|-
T Consensus 195 ~IrdlafSp~~~GLl~~asl~----------nkiki~dlet~~~vssy~a~~--~~wSC-~wDl--de~h~IYaGl---- 255 (463)
T KOG1645|consen 195 FIRDLAFSPFNEGLLGLASLG----------NKIKIMDLETSCVVSSYIAYN--QIWSC-CWDL--DERHVIYAGL---- 255 (463)
T ss_pred hhhhhccCccccceeeeeccC----------ceEEEEecccceeeeheeccC--Cceee-eecc--CCcceeEEec----
Confidence 456678888777 44444443 378999988888888777652 22232 2433 3478888775
Q ss_pred CCCCCCcceEEEEEEEeCC--eEEEEEEEEecCceeEeccccC-------eEEEEECCEEEEEEe
Q 001387 793 PEENEPTKGRILVFIVEDG--KLQLIAEKETKGAVYSLNAFNG-------KLLAAINQKIQLYKW 848 (1088)
Q Consensus 793 ~~e~~~~~Gri~v~~i~~~--kl~~~~~~~~~g~v~ai~~~~g-------~Lv~~~g~~l~v~~~ 848 (1088)
.+|-+|+|++... -+-.........||..|+.+.+ .++++.-.-+..|++
T Consensus 256 ------~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei 314 (463)
T KOG1645|consen 256 ------QNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEI 314 (463)
T ss_pred ------cCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhh
Confidence 5799999999832 1222222344567777766643 345554444444443
No 171
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.07 E-value=57 Score=36.55 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=54.2
Q ss_pred ECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEecccc--CeEE-E
Q 001387 761 PLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFN--GKLL-A 837 (1088)
Q Consensus 761 ~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~--g~Lv-~ 837 (1088)
....+|.+.|+.. ++..+|+++|| ..|.+.+|+...-+.-+..++.+.+-||+++-.. .++. +
T Consensus 277 ~~~~~~siSsl~V----S~dGkf~AlGT----------~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~sv 342 (398)
T KOG0771|consen 277 KIKRFKSISSLAV----SDDGKFLALGT----------MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASV 342 (398)
T ss_pred hhhccCcceeEEE----cCCCcEEEEec----------cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccc
Confidence 3455778887764 34689999999 3589999998765666666778889999988553 2333 5
Q ss_pred EECCEEEEEEee
Q 001387 838 AINQKIQLYKWM 849 (1088)
Q Consensus 838 ~~g~~l~v~~~~ 849 (1088)
+.+++..+..+.
T Consensus 343 Ss~~~~~v~~l~ 354 (398)
T KOG0771|consen 343 SSDNEAAVTKLA 354 (398)
T ss_pred ccCCceeEEEEe
Confidence 677777777764
No 172
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=65.92 E-value=2.1e+02 Score=31.44 Aligned_cols=189 Identities=16% Similarity=0.166 Sum_probs=93.8
Q ss_pred ccEEEEEecCceE-EEEecCCCceeeeeecceeccccceeeee-cCCCeEEEEec-CcEEEEecCCcce--eeeeeCCCC
Q 001387 414 DTFLVVSFISETR-ILAMNLEDELEETEIEGFCSQTQTLFCHD-AIYNQLVQVTS-GSVRLVSSTSREL--RNEWKSPPG 488 (1088)
Q Consensus 414 ~~~lilS~~~~T~-vl~~~~~~~~~e~~~~~f~~~~~Ti~~~~-~~~~~ivQVt~-~~i~l~~~~~~~~--~~~~~~~~~ 488 (1088)
.+.++++..+.+. +|.....+-+++..-+.-.+|. +=+++. -+. .++-.+. -.||+.+...++. ...|....+
T Consensus 40 e~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~-vrf~~~ds~h-~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~ 117 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNG-VRFISCDSPH-GVISCSSDGTVRLWDIRSQAESARISWTQQSG 117 (376)
T ss_pred ceeEEEEecCCeEEEEeccchhhhheecCCCCcccc-eEEecCCCCC-eeEEeccCCeEEEEEeecchhhhheeccCCCC
Confidence 3558888888764 5544443345544322211221 111111 112 2333333 4789988765332 233443233
Q ss_pred CcEEEEEE--CCCEEEEEE----CCCeEEEEEEcC-cE-EEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEE
Q 001387 489 YSVNVATA--NASQVLLAT----GGGHLVYLEIGD-GI-LTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISV 560 (1088)
Q Consensus 489 ~~I~~a~~--~~~~lvv~~----~~~~l~~~~~~~-~~-l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i 560 (1088)
..-.+-+. +..++.... ++..++++.+.+ .+ +.... -.-...|+++.|.|. ..+.++-|.- ||-+
T Consensus 118 ~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~-eSH~DDVT~lrFHP~-----~pnlLlSGSv-DGLv 190 (376)
T KOG1188|consen 118 TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN-ESHNDDVTQLRFHPS-----DPNLLLSGSV-DGLV 190 (376)
T ss_pred CcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh-hhccCcceeEEecCC-----CCCeEEeecc-cceE
Confidence 33333333 333333221 233455555533 11 11111 012467999999763 3677777877 9999
Q ss_pred EEEECCC-CCceEEecCCCC-cCceeEEeeeecCce--EEEEEeCCCcEEEEEEecCC
Q 001387 561 RIFSLPD-LNLITKEHLGGE-IIPRSVLLCAFEGIS--YLLCALGDGHLLNFLLNMKT 614 (1088)
Q Consensus 561 ~i~~l~~-l~~~~~~~l~~~-~~p~si~~~~~~~~~--~L~vgl~~G~l~~y~~~~~~ 614 (1088)
.+|++.. -+. ++|-.- -...||..+.+-++- .+++-+..+.+..|++...+
T Consensus 191 nlfD~~~d~Ee---DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 191 NLFDTKKDNEE---DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred EeeecCCCcch---hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 9999852 111 111000 012344434333333 58899999999999997654
No 173
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=65.23 E-value=93 Score=34.92 Aligned_cols=96 Identities=18% Similarity=0.169 Sum_probs=53.6
Q ss_pred cCcEEEEecCCcceeeeeeCCCCCcEEEEEEC--CCEEEEEECCCeEEEEEEcCcEEEEE---eeccCCceeEEEEeCCC
Q 001387 466 SGSVRLVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEV---KHAQLEYEISCLDINPI 540 (1088)
Q Consensus 466 ~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~~~~~l~~~~~~~~~l~~~---~~~~l~~~is~l~~~~~ 540 (1088)
.+.||+++..+..+..+ .|.|..|++.+.+ +..++.+..+..+-.+......+... .-+......+..-|+|
T Consensus 321 DkkvRfwD~Rs~~~~~s--v~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp- 397 (459)
T KOG0288|consen 321 DKKVRFWDIRSADKTRS--VPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP- 397 (459)
T ss_pred ccceEEEeccCCceeeE--eecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC-
Confidence 34578887554334443 3456678888765 33444443444444444322222221 1122334455555654
Q ss_pred CCCCCCccEEEEEEecCCEEEEEECCCCCc
Q 001387 541 GENPSYSQIAAVGMWTDISVRIFSLPDLNL 570 (1088)
Q Consensus 541 ~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~ 570 (1088)
.+.|++.|.- ||+++||++..-++
T Consensus 398 -----d~~YvaAGS~-dgsv~iW~v~tgKl 421 (459)
T KOG0288|consen 398 -----DGSYVAAGSA-DGSVYIWSVFTGKL 421 (459)
T ss_pred -----CCceeeeccC-CCcEEEEEccCceE
Confidence 3689999988 99999999975444
No 174
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=64.82 E-value=1.4e+02 Score=31.57 Aligned_cols=143 Identities=15% Similarity=0.220 Sum_probs=88.2
Q ss_pred cCeEEEec-CCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCC
Q 001387 715 PRRICHQE-QSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLP 793 (1088)
Q Consensus 715 p~~i~y~~-~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~ 793 (1088)
...++.+| +.+.+++++.+ ..+++.|..+.+.+..++..-.+.. ..|. ...+|++||...
T Consensus 67 vdql~w~~~~~d~~atas~d----------k~ir~wd~r~~k~~~~i~~~~eni~---i~ws---p~g~~~~~~~kd--- 127 (313)
T KOG1407|consen 67 VDQLCWDPKHPDLFATASGD----------KTIRIWDIRSGKCTARIETKGENIN---ITWS---PDGEYIAVGNKD--- 127 (313)
T ss_pred hhhheeCCCCCcceEEecCC----------ceEEEEEeccCcEEEEeeccCcceE---EEEc---CCCCEEEEecCc---
Confidence 44555544 45566666554 3689999988888888887655543 2332 236788888632
Q ss_pred CCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc--cCeEEEEEC-CEEEEEEeeeccCcccccccccccccce--
Q 001387 794 EENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF--NGKLLAAIN-QKIQLYKWMLRDDGTRELQSECGHHGHI-- 868 (1088)
Q Consensus 794 ~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~--~g~Lv~~~g-~~l~v~~~~~~~~~~~~L~~~~~~~~~~-- 868 (1088)
-+|-.+++. +.+.+.+++++--+..++-- ++..+...| .++.+.+|. .|.++.....++
T Consensus 128 -------D~it~id~r--~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp-------sLkpv~si~AH~sn 191 (313)
T KOG1407|consen 128 -------DRITFIDAR--TYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP-------SLKPVQSIKAHPSN 191 (313)
T ss_pred -------ccEEEEEec--ccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecc-------ccccccccccCCcc
Confidence 256666654 44555566666556555543 345566677 788888873 244443333333
Q ss_pred -EEEEEEEeCCEEEEEeccccEEEE
Q 001387 869 -LALYVQTRGDFIVVGDLMKSISLL 892 (1088)
Q Consensus 869 -~~~~l~~~~~~I~vgD~~~Sv~~~ 892 (1088)
+.+.+.-.|.+..+|-+--.+++.
T Consensus 192 CicI~f~p~GryfA~GsADAlvSLW 216 (313)
T KOG1407|consen 192 CICIEFDPDGRYFATGSADALVSLW 216 (313)
T ss_pred eEEEEECCCCceEeeccccceeecc
Confidence 345555568899998877777764
No 175
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=64.57 E-value=1.6e+02 Score=34.58 Aligned_cols=235 Identities=19% Similarity=0.164 Sum_probs=105.9
Q ss_pred CCeEEEeeecCCeEEEEEeeCCCCCCCcEEEEeeecc-CCceeeeEEeccCCCCCceEEEEeeCCCCceEEEEecC----
Q 001387 311 NAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVN-LGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNG---- 385 (1088)
Q Consensus 311 ~~~lf~gS~~gds~l~~~~~~~~~~~~~~~~~~~l~n-~~Pi~D~~~~~~~~~~~~~l~~~sG~g~~g~L~~lr~g---- 385 (1088)
...|+.+|+.|-=.+|.+....+..+.-++.+-++-+ -|||+..++.... . .+-+| |-.|+++-..--
T Consensus 306 ep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~----~--~~ysg-g~Dg~I~~w~~p~n~d 378 (577)
T KOG0642|consen 306 EPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNG----E--HCYSG-GIDGTIRCWNLPPNQD 378 (577)
T ss_pred CCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCc----e--EEEee-ccCceeeeeccCCCCC
Confidence 4578888888877777774322111222555666655 4999988876532 2 23344 566777765211
Q ss_pred ----CceeEEEeeeCCCc-ceEEEeecCCCCCCccEEEEEecCceEEEEecCCCc--eeeeeecc------eecccccee
Q 001387 386 ----IGINEQASVELQGI-KGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDE--LEETEIEG------FCSQTQTLF 452 (1088)
Q Consensus 386 ----i~~~~~~~~~l~~v-~~iw~l~~~~~~~~~~~lilS~~~~T~vl~~~~~~~--~~e~~~~~------f~~~~~Ti~ 452 (1088)
..+..+.. .+-|- ..+|.+-.+. ..+..+.+|+...-+.+...+... +.+..+.+ |....+-+.
T Consensus 379 p~ds~dp~vl~~-~l~Ghtdavw~l~~s~--~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~ 455 (577)
T KOG0642|consen 379 PDDSYDPSVLSG-TLLGHTDAVWLLALSS--TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHS 455 (577)
T ss_pred cccccCcchhcc-ceeccccceeeeeecc--cccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhh
Confidence 11111111 22333 3788886642 223333333333223332222111 11111111 111111111
Q ss_pred eeec--CC-CeEEEEecCcEEEEecCCcceeeeeeCCCCCcEEEEE-ECCCEEEEEECCCeEEEEEEcCcEEEEEeeccC
Q 001387 453 CHDA--IY-NQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVAT-ANASQVLLATGGGHLVYLEIGDGILTEVKHAQL 528 (1088)
Q Consensus 453 ~~~~--~~-~~ivQVt~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~-~~~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l 528 (1088)
.+.. +. ...=|.+.+.++++.......... ....+...+ -+....+.+..+..+.+|+...+++..-.....
T Consensus 456 ~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~----~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~ 531 (577)
T KOG0642|consen 456 LASFRFGYTSIDDMEVVSDLLIFESSASPGPRR----YPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHK 531 (577)
T ss_pred hhhcccccccchhhhhhhheeeccccCCCcccc----cCccceEEecCCCCeeEecccCCceecccccccccchheeecc
Confidence 1111 00 111222333333332221000000 001111222 224455555566667776654444332211222
Q ss_pred CceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCC
Q 001387 529 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD 567 (1088)
Q Consensus 529 ~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~ 567 (1088)
.-++++++.+ ...+++-|.. |+++.+|++..
T Consensus 532 -~svtslai~~------ng~~l~s~s~-d~sv~l~kld~ 562 (577)
T KOG0642|consen 532 -DSVTSLAIDP------NGPYLMSGSH-DGSVRLWKLDV 562 (577)
T ss_pred -ceecceeecC------CCceEEeecC-Cceeehhhccc
Confidence 2377888865 3678888877 99999999854
No 176
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=62.91 E-value=2.3e+02 Score=30.82 Aligned_cols=261 Identities=13% Similarity=0.142 Sum_probs=124.7
Q ss_pred CcEEEEE--ECCCEEEEEECCCeEEEEEEcCcEEEEEe------eccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEE
Q 001387 489 YSVNVAT--ANASQVLLATGGGHLVYLEIGDGILTEVK------HAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISV 560 (1088)
Q Consensus 489 ~~I~~a~--~~~~~lvv~~~~~~l~~~~~~~~~l~~~~------~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i 560 (1088)
..|+..+ .++..++-+..++.+..+.+++ +...+ ..+.+ ..+.+.+.| .-.-++|.+-..+++
T Consensus 87 ~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~D--F~~~eHr~~R~nve~d-hpT~V~Fap------Dc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 87 KEVTDVAFSSDGKKLATISGDRSIRLWDVRD--FENKEHRCIRQNVEYD-HPTRVVFAP------DCKSVVVSVKRGNKL 157 (420)
T ss_pred CceeeeEEcCCCceeEEEeCCceEEEEecch--hhhhhhhHhhccccCC-CceEEEECC------CcceEEEEEccCCEE
Confidence 4566665 3466776666788888877754 22211 12333 467777765 133455655667899
Q ss_pred EEEECCCCCc-------eEEecCCCCcCceeEEeeeec---CceEEEEEeCCCcEEEEEEecCCCccccceeeecCccce
Q 001387 561 RIFSLPDLNL-------ITKEHLGGEIIPRSVLLCAFE---GISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPI 630 (1088)
Q Consensus 561 ~i~~l~~l~~-------~~~~~l~~~~~p~si~~~~~~---~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv 630 (1088)
++|.+..-+- +..+++.. .--+++.+..++ +..++.-...|-.++.|.+..+ .|....+.++...-.
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f-~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq--~L~~idtnq~~n~~a 234 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEF-ERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQ--LLQSIDTNQSSNYDA 234 (420)
T ss_pred EEEEeeecccCCCCccccccccccc-chhcccceEEEeecCCceEEEEecCCCcEEEEecCCc--eeeeeccccccccce
Confidence 9998742111 11111110 001233222221 2223333333444444443311 011111111111111
Q ss_pred eEEEEEeCCceEEEEecCCceE-----EEecCCcEE----Eeeccc-ccceeeeccCCCCCCCeEEEE-eCCeEEEEEEc
Q 001387 631 TLRTFSSKNTTHVFAASDRPTV-----IYSSNKKLL----YSNVNL-KEVSHMCPFNSAAFPDSLAIA-KEGELTIGTID 699 (1088)
Q Consensus 631 ~l~~~~~~~~~~v~~~~~~p~~-----i~~~~~~~~----~~~l~~-~~i~~~~~f~~~~~~~~l~~~-~~~~l~i~~l~ 699 (1088)
.+.| ++..+.++|=.|=+ +|..+|.++ ...+.. +.......|++. ....+-+ .++..+|-..+
T Consensus 235 avSP----~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~--S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 235 AVSP----DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS--STRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred eeCC----CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC--cceeEEEecCCcEEEeecc
Confidence 2222 23445555655532 344444442 122221 222223344432 1234443 37777776655
Q ss_pred CC------CC-eEEEEEeC---CCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEe
Q 001387 700 DI------QK-LHIRSIPL---GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGC 769 (1088)
Q Consensus 700 ~~------~~-~~~~~i~l---~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~ 769 (1088)
-. .+ +-.-.+|+ |..|.|+..+|+.+.+++.. .+.|+++...+++..++++=--.+.+.
T Consensus 309 VrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-----------gs~l~~~~se~g~~~~~~e~~h~~~Is 377 (420)
T KOG2096|consen 309 VRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-----------GSDLKVFASEDGKDYPELEDIHSTTIS 377 (420)
T ss_pred ceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-----------CCceEEEEcccCccchhHHHhhcCcee
Confidence 32 11 12223455 56799999999999998875 367999988877766655443344444
Q ss_pred EEEEEEEcCCCc
Q 001387 770 SILSCSFSDDSN 781 (1088)
Q Consensus 770 si~~~~~~~~~~ 781 (1088)
| +.+..+++
T Consensus 378 ~---is~~~~g~ 386 (420)
T KOG2096|consen 378 S---ISYSSDGK 386 (420)
T ss_pred e---EEecCCCc
Confidence 4 34444443
No 177
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=60.97 E-value=2.9e+02 Score=31.25 Aligned_cols=194 Identities=17% Similarity=0.227 Sum_probs=103.0
Q ss_pred CCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeee
Q 001387 712 GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYV 791 (1088)
Q Consensus 712 ~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~ 791 (1088)
..++..|.++|+.+ |+++|.-. -++.+.|..|++....|+=.-+-.+.|++ | +++ +.. +++|.
T Consensus 269 ~~~V~yi~wSPDdr-yLlaCg~~---------e~~~lwDv~tgd~~~~y~~~~~~S~~sc~-W-~pD-g~~-~V~Gs--- 331 (519)
T KOG0293|consen 269 SQPVSYIMWSPDDR-YLLACGFD---------EVLSLWDVDTGDLRHLYPSGLGFSVSSCA-W-CPD-GFR-FVTGS--- 331 (519)
T ss_pred cCceEEEEECCCCC-eEEecCch---------HheeeccCCcchhhhhcccCcCCCcceeE-E-ccC-Cce-eEecC---
Confidence 35667788898866 45555432 24888888888766555433334455544 3 232 233 66665
Q ss_pred CCCCCCCcceEEEEEEEeCC---eEEEEEEEEecCceeEecc-ccCe--EEEEECCEEEEEEeeeccCcccccccccccc
Q 001387 792 LPEENEPTKGRILVFIVEDG---KLQLIAEKETKGAVYSLNA-FNGK--LLAAINQKIQLYKWMLRDDGTRELQSECGHH 865 (1088)
Q Consensus 792 ~~~e~~~~~Gri~v~~i~~~---kl~~~~~~~~~g~v~ai~~-~~g~--Lv~~~g~~l~v~~~~~~~~~~~~L~~~~~~~ 865 (1088)
..+.++.++.+.+ +.+-+- .-.|+.++. .+|+ ++++..+++.+|..+.+.+ +.+.. ..
T Consensus 332 -------~dr~i~~wdlDgn~~~~W~gvr----~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d--r~lis---e~ 395 (519)
T KOG0293|consen 332 -------PDRTIIMWDLDGNILGNWEGVR----DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD--RGLIS---EE 395 (519)
T ss_pred -------CCCcEEEecCCcchhhcccccc----cceeEEEEEcCCCcEEEEEecccceeeechhhhhh--hcccc---cc
Confidence 2256777777632 111111 123444542 2454 4567778899988643211 11211 12
Q ss_pred cceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEE-eccCCCceeEEEEEeeCc--eEEEEccCCcEEEEeeCC
Q 001387 866 GHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEER-ARDYNANWMSAVEILDDD--IYLGAENNFNLFTVRKNS 940 (1088)
Q Consensus 866 ~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~-~~D~~~~~v~~~~~l~~~--~~l~~D~~gnl~~l~~~~ 940 (1088)
.++...+++-.+.+++|-=.-+.+.+..+. +++++.- -.....+.+...+|=..+ .++.+..++.+++...-.
T Consensus 396 ~~its~~iS~d~k~~LvnL~~qei~LWDl~--e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s 471 (519)
T KOG0293|consen 396 QPITSFSISKDGKLALVNLQDQEIHLWDLE--ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS 471 (519)
T ss_pred CceeEEEEcCCCcEEEEEcccCeeEEeecc--hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccC
Confidence 223333444445588888778888775554 4444321 112233444444454333 345566689999887653
No 178
>PTZ00420 coronin; Provisional
Probab=59.99 E-value=3.9e+02 Score=32.48 Aligned_cols=75 Identities=8% Similarity=0.045 Sum_probs=47.4
Q ss_pred CcEEEEEECC--CEEEE-EECCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEEC
Q 001387 489 YSVNVATANA--SQVLL-ATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL 565 (1088)
Q Consensus 489 ~~I~~a~~~~--~~lvv-~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l 565 (1088)
..|.+.+.++ ..+++ +..++.+.+..+..++... .......|+++++.+ .+..++.++. ++.++||++
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~--~i~~~~~V~Slswsp------dG~lLat~s~-D~~IrIwD~ 196 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF--QINMPKKLSSLKWNI------KGNLLSGTCV-GKHMHIIDP 196 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEE--EEecCCcEEEEEECC------CCCEEEEEec-CCEEEEEEC
Confidence 3566766653 33433 3456778777776543221 122346789999865 2457777766 999999999
Q ss_pred CCCCceE
Q 001387 566 PDLNLIT 572 (1088)
Q Consensus 566 ~~l~~~~ 572 (1088)
...+.+.
T Consensus 197 Rsg~~i~ 203 (568)
T PTZ00420 197 RKQEIAS 203 (568)
T ss_pred CCCcEEE
Confidence 8765543
No 179
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=59.98 E-value=3.8e+02 Score=34.89 Aligned_cols=120 Identities=16% Similarity=0.111 Sum_probs=67.8
Q ss_pred CCCcEEEEE--ECCCEEEEEECCCeEEEEEEcC--cE---EEEEeeccCC--c-eeEEEEeCCCCCCCCCccEEEEEEec
Q 001387 487 PGYSVNVAT--ANASQVLLATGGGHLVYLEIGD--GI---LTEVKHAQLE--Y-EISCLDINPIGENPSYSQIAAVGMWT 556 (1088)
Q Consensus 487 ~~~~I~~a~--~~~~~lvv~~~~~~l~~~~~~~--~~---l~~~~~~~l~--~-~is~l~~~~~~~~~~~~~~~~vg~w~ 556 (1088)
.+.++.+.. -++++++++.++|.+..+.++. .+ ........+. . -+++-+... ...+..+++++-
T Consensus 1097 ~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~----~~~S~~lvy~T~- 1171 (1431)
T KOG1240|consen 1097 EGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTA----IVQSHVLVYATD- 1171 (1431)
T ss_pred cCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccc----cccceeEEEEEe-
Confidence 445555544 3478999998899998888764 11 1111122222 2 223333321 112445555554
Q ss_pred CCEEEEEECCCCCceEEecCC-CCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecC
Q 001387 557 DISVRIFSLPDLNLITKEHLG-GEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMK 613 (1088)
Q Consensus 557 ~~~i~i~~l~~l~~~~~~~l~-~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~ 613 (1088)
.+.+..|+.....-.+....+ ......|+++.+ ...++++|+..|.+..|.+...
T Consensus 1172 ~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp--~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1172 LSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP--WCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred ccceEEecchhhhhHHhhhcCccccceeEEEecC--CceEEEEecCCceEEEEEeecC
Confidence 567888887544333322111 113455666553 3469999999999999988653
No 180
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=59.72 E-value=3.5e+02 Score=31.78 Aligned_cols=89 Identities=22% Similarity=0.413 Sum_probs=57.0
Q ss_pred cCceeEeccc-cCeEEEEEC--CEEEEEEeeeccCcccccccc-cccccceEEEEEEEeCCEEEEEeccccEEEEEEecc
Q 001387 822 KGAVYSLNAF-NGKLLAAIN--QKIQLYKWMLRDDGTRELQSE-CGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHE 897 (1088)
Q Consensus 822 ~g~v~ai~~~-~g~Lv~~~g--~~l~v~~~~~~~~~~~~L~~~-~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~ 897 (1088)
+|++...+.. +|+.+++++ ..|+||.++ ..+|+.. -+|-+-.+.++-+-.|.+|++|---+=|+++.|.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fd-----t~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~-- 362 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFD-----TQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE-- 362 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeecc-----HHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEec--
Confidence 4455555544 566665555 678898884 3456553 2344444555555678899999999988887664
Q ss_pred CCeEEEEecc-CCCceeEEEEEe
Q 001387 898 EGAIEERARD-YNANWMSAVEIL 919 (1088)
Q Consensus 898 ~~~l~~~~~D-~~~~~v~~~~~l 919 (1088)
+.++ +||- -+.-||+.+.|=
T Consensus 363 erRV--VARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 363 ERRV--VARGQGHKSWVSVVAFD 383 (636)
T ss_pred cceE--EEeccccccceeeEeec
Confidence 3444 5554 455699888774
No 181
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=59.55 E-value=3.7e+02 Score=32.00 Aligned_cols=186 Identities=14% Similarity=0.121 Sum_probs=111.1
Q ss_pred ccCeEEEecCCCEEEEEEeec--C-----CCcCcceeEEEEEEeC--CCceEEEEEECCCCceEeEEEEEEEcC-CCceE
Q 001387 714 HPRRICHQEQSRTFAICSLKN--Q-----SCAEESEMHFVRLLDD--QTFEFISTYPLDTFEYGCSILSCSFSD-DSNVY 783 (1088)
Q Consensus 714 tp~~i~y~~~~~~~~v~~~~~--~-----~~~~~~~~s~l~lid~--~t~~~i~~~~~~~~E~v~si~~~~~~~-~~~~~ 783 (1088)
..|++.-.+..++++|=-... + |-..|.++.-+.++.- ...+++..+.-+-+. . .+.|.. +.+..
T Consensus 147 ~~r~l~~N~~qDl~ivWW~~~~~e~~PWsP~~~e~draNl~L~~~~~~klEvL~yirTE~dP--l---~~~Fs~~~~~qi 221 (545)
T PF11768_consen 147 LERHLSVNSSQDLVIVWWPSAQDEVWPWSPISSEKDRANLHLLSCSGGKLEVLSYIRTENDP--L---DVEFSLNQPYQI 221 (545)
T ss_pred cceeEeeccCCCEEEEEecCCCCCcCCCCCccccchhccEEEEEecCCcEEEEEEEEecCCc--E---EEEccCCCCcEE
Confidence 456677666666665543221 1 2223445555666543 345677665544333 2 233443 35677
Q ss_pred EEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEE--EecCceeEeccc--cCeEE-EEECCEEEEEEeeeccCccccc
Q 001387 784 YCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEK--ETKGAVYSLNAF--NGKLL-AAINQKIQLYKWMLRDDGTREL 858 (1088)
Q Consensus 784 i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~--~~~g~v~ai~~~--~g~Lv-~~~g~~l~v~~~~~~~~~~~~L 858 (1088)
..|.-.....+| ..=.--+|++.++|++-+... ..+.+|.+.+-- ..+|+ .|..+.|.+|+-. -+..++
T Consensus 222 ~tVE~s~s~~g~---~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~---~~~t~~ 295 (545)
T PF11768_consen 222 HTVEQSISVKGE---PSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTT---RGVTLL 295 (545)
T ss_pred EEEEEecCCCCC---ceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcC---CCeeee
Confidence 788777655443 333445788888888876654 456777766533 35665 4666899998842 111112
Q ss_pred ccccccccceEEEEEEEe--CCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEE
Q 001387 859 QSECGHHGHILALYVQTR--GDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSA 915 (1088)
Q Consensus 859 ~~~~~~~~~~~~~~l~~~--~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~ 915 (1088)
. .....|+.+.+. |..++||.-+-=+..+..--.+-++..++.|..|..+..
T Consensus 296 ~-----ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~ 349 (545)
T PF11768_consen 296 A-----KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQ 349 (545)
T ss_pred e-----eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceeeccccCCCccEEe
Confidence 1 223346666764 559999999888887654456778888999998887643
No 182
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=58.10 E-value=3e+02 Score=30.59 Aligned_cols=248 Identities=13% Similarity=0.145 Sum_probs=127.5
Q ss_pred CCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCC-CceEEecCCCCcCcee
Q 001387 506 GGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDL-NLITKEHLGGEIIPRS 584 (1088)
Q Consensus 506 ~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l-~~~~~~~l~~~~~p~s 584 (1088)
.++.+..+...+|++..- ..--...+-.+++.. +...++.+-.|-++.+|++... +.+ ...+..+....+
T Consensus 128 ~d~tikv~D~~tg~~e~~-LrGHt~sv~di~~~a-------~Gk~l~tcSsDl~~~LWd~~~~~~c~-ks~~gh~h~vS~ 198 (406)
T KOG0295|consen 128 EDATIKVFDTETGELERS-LRGHTDSVFDISFDA-------SGKYLATCSSDLSAKLWDFDTFFRCI-KSLIGHEHGVSS 198 (406)
T ss_pred CCceEEEEEccchhhhhh-hhccccceeEEEEec-------CccEEEecCCccchhheeHHHHHHHH-HHhcCcccceee
Confidence 467787777766666221 011112254555532 3355666666767888887642 211 112333456678
Q ss_pred EEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecCcc-ceeEEEEEeCCceEEEEecCCce----EEEecC--
Q 001387 585 VLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQ-PITLRTFSSKNTTHVFAASDRPT----VIYSSN-- 657 (1088)
Q Consensus 585 i~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~-pv~l~~~~~~~~~~v~~~~~~p~----~i~~~~-- 657 (1088)
+.+.+.+ .+++-..+|-.+..++++..- ....+-|.. =|++.+ .++.-.+++.|+.-- |....+
T Consensus 199 V~f~P~g--d~ilS~srD~tik~We~~tg~-----cv~t~~~h~ewvr~v~--v~~DGti~As~s~dqtl~vW~~~t~~~ 269 (406)
T KOG0295|consen 199 VFFLPLG--DHILSCSRDNTIKAWECDTGY-----CVKTFPGHSEWVRMVR--VNQDGTIIASCSNDQTLRVWVVATKQC 269 (406)
T ss_pred EEEEecC--CeeeecccccceeEEecccce-----eEEeccCchHhEEEEE--ecCCeeEEEecCCCceEEEEEeccchh
Confidence 8777765 788888899988887776531 111122221 244444 333446777665432 222222
Q ss_pred -CcEEEeecccccceeeeccCC-----CCCC-----CeEEE-EeCCeEEEEEEcCCCCeEEEEEeCCCccCeEEEecCCC
Q 001387 658 -KKLLYSNVNLKEVSHMCPFNS-----AAFP-----DSLAI-AKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSR 725 (1088)
Q Consensus 658 -~~~~~~~l~~~~i~~~~~f~~-----~~~~-----~~l~~-~~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~ 725 (1088)
..++-+... -...+.+|+.. ++-+ ..+.. ..++.++|=.++.. .....-.-.+.=++-++++|..+
T Consensus 270 k~~lR~hEh~-vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-~cL~tL~ghdnwVr~~af~p~Gk 347 (406)
T KOG0295|consen 270 KAELREHEHP-VECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-MCLFTLVGHDNWVRGVAFSPGGK 347 (406)
T ss_pred hhhhhccccc-eEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-eEEEEEecccceeeeeEEcCCCe
Confidence 111111100 11223333322 1111 12222 33677777777653 22222333445678889998765
Q ss_pred EEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEe
Q 001387 726 TFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGT 788 (1088)
Q Consensus 726 ~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT 788 (1088)
|++.|.++ .+|++.|-++.+.+...+ ++|+.... .-|.. ..+|++-|.
T Consensus 348 -yi~ScaDD---------ktlrvwdl~~~~cmk~~~--ah~hfvt~--lDfh~-~~p~VvTGs 395 (406)
T KOG0295|consen 348 -YILSCADD---------KTLRVWDLKNLQCMKTLE--AHEHFVTS--LDFHK-TAPYVVTGS 395 (406)
T ss_pred -EEEEEecC---------CcEEEEEeccceeeeccC--CCcceeEE--EecCC-CCceEEecc
Confidence 56666654 689999988887766554 66664322 22332 345665553
No 183
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=57.61 E-value=2.8e+02 Score=30.12 Aligned_cols=132 Identities=11% Similarity=-0.006 Sum_probs=83.4
Q ss_pred EEEEEeCC----eEEEEEEEEecCceeEeccccCeEEEEEC-CEEEEEEeeeccCcccccccccccccceEEEEEEEeCC
Q 001387 804 LVFIVEDG----KLQLIAEKETKGAVYSLNAFNGKLLAAIN-QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGD 878 (1088)
Q Consensus 804 ~v~~i~~~----kl~~~~~~~~~g~v~ai~~~~g~Lv~~~g-~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~ 878 (1088)
.++++.+- ...++.....++-+..+..-.++.++|-+ +-|++++++..+ +-.+ ..++++.-++-...+-||
T Consensus 64 ~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~--sP~~--~~~lnt~gyaygv~vsGn 139 (370)
T COG5276 64 AILDITNVSLQTHDVLLSVINARDLFADVRVSEEYVYVADWSSGLRIVDISTPD--SPTL--IGFLNTDGYAYGVYVSGN 139 (370)
T ss_pred eeccccCcccccCcceEEEEehhhhhheeEecccEEEEEcCCCceEEEeccCCC--Ccce--eccccCCceEEEEEecCC
Confidence 35555532 23344445555555555544567666665 457887765322 1122 344554345555667899
Q ss_pred EEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCceEEEEccCCcEEEEeeCC
Q 001387 879 FIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNS 940 (1088)
Q Consensus 879 ~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~~ 940 (1088)
+.+|+|.-+++-++... ++.+=.+.+|-..+-|-+.-..++.++-.+++.++.|.++....
T Consensus 140 ~aYVadlddgfLivdvs-dpssP~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSn 200 (370)
T COG5276 140 YAYVADLDDGFLIVDVS-DPSSPQLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSN 200 (370)
T ss_pred EEEEeeccCcEEEEECC-CCCCceeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccC
Confidence 99999999997554332 35555667777666665555567777888999999999999864
No 184
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=57.20 E-value=30 Score=36.79 Aligned_cols=70 Identities=14% Similarity=0.203 Sum_probs=51.2
Q ss_pred eEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc--cC------eEEEEEC
Q 001387 769 CSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF--NG------KLLAAIN 840 (1088)
Q Consensus 769 ~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~--~g------~Lv~~~g 840 (1088)
.||...-+..++..-++||..-. ....=+|.||+ -..+.++....+.+.+|+.| +. -|.+|.|
T Consensus 18 sC~~l~Dl~gDGd~kLvvaD~g~-----~~~~~kLKVyk----Gt~l~~E~~L~d~P~ai~sFy~d~~ep~~P~iAVA~G 88 (257)
T PF14779_consen 18 SCMALADLQGDGDYKLVVADLGT-----GDQNMKLKVYK----GTSLISEITLPDLPSAIVSFYMDEHEPRTPAIAVAAG 88 (257)
T ss_pred ceeEeeecCCCCeEEEEEEecCC-----cCCCceEEEEc----CCChhhcccccCCCeEEEEEeccCCCCCCCeEEEEeC
Confidence 46666666667788888887421 11223888883 46677888899999999998 11 3899999
Q ss_pred CEEEEEE
Q 001387 841 QKIQLYK 847 (1088)
Q Consensus 841 ~~l~v~~ 847 (1088)
+.|++|+
T Consensus 89 ~~vyiYk 95 (257)
T PF14779_consen 89 PSVYIYK 95 (257)
T ss_pred CEEEEEe
Confidence 9999986
No 185
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=57.02 E-value=22 Score=24.93 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=23.9
Q ss_pred CCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEE
Q 001387 528 LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFS 564 (1088)
Q Consensus 528 l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~ 564 (1088)
-...|.|+++.+ ...+++.|.. |+.+++|+
T Consensus 10 h~~~i~~i~~~~------~~~~~~s~~~-D~~i~vwd 39 (39)
T PF00400_consen 10 HSSSINSIAWSP------DGNFLASGSS-DGTIRVWD 39 (39)
T ss_dssp SSSSEEEEEEET------TSSEEEEEET-TSEEEEEE
T ss_pred CCCcEEEEEEec------ccccceeeCC-CCEEEEEC
Confidence 356789999875 2578888887 99999985
No 186
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=56.96 E-value=3.3e+02 Score=32.14 Aligned_cols=106 Identities=12% Similarity=0.160 Sum_probs=68.5
Q ss_pred CceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEE-EEecCceeEecccc-CeEEEEECCEEEEEEeeeccCcccc
Q 001387 780 SNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAE-KETKGAVYSLNAFN-GKLLAAINQKIQLYKWMLRDDGTRE 857 (1088)
Q Consensus 780 ~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~-~~~~g~v~ai~~~~-g~Lv~~~g~~l~v~~~~~~~~~~~~ 857 (1088)
+..++|.|| .+|.+.+|.+..++++...+ -.+.|+|.++..-+ -..+.++|...++..|++++ ++
T Consensus 69 ~t~~lvlgt----------~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~---~~ 135 (541)
T KOG4547|consen 69 DTSMLVLGT----------PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE---KV 135 (541)
T ss_pred CceEEEeec----------CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc---ce
Confidence 468899998 56999999999888887666 56899999988543 35778888888887886443 22
Q ss_pred cccccccccc-eEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEE
Q 001387 858 LQSECGHHGH-ILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 902 (1088)
Q Consensus 858 L~~~~~~~~~-~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~ 902 (1088)
+ .|.+... ..+.++....+-=+.+.+.+.+.++ +.+..++.
T Consensus 136 ~--~~~~~~~~~~~~sl~is~D~~~l~~as~~ik~~--~~~~kevv 177 (541)
T KOG4547|consen 136 I--IRIWKEQKPLVSSLCISPDGKILLTASRQIKVL--DIETKEVV 177 (541)
T ss_pred e--eeeeccCCCccceEEEcCCCCEEEeccceEEEE--EccCceEE
Confidence 3 2333322 2344454444422445566776664 54544443
No 187
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=56.77 E-value=16 Score=25.09 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=20.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHhc
Q 001387 1062 RMDEISKTMNVSVEELCKRVEELTR 1086 (1088)
Q Consensus 1062 ~q~~i~~~~~~~~~~i~~~l~~l~~ 1086 (1088)
.+++||+-+|.++|.+.+.+..|++
T Consensus 4 tr~diA~~lG~t~ETVSR~l~~l~~ 28 (32)
T PF00325_consen 4 TRQDIADYLGLTRETVSRILKKLER 28 (32)
T ss_dssp -HHHHHHHHTS-HHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 3689999999999999999988875
No 188
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=56.66 E-value=2.5e+02 Score=29.22 Aligned_cols=171 Identities=12% Similarity=0.059 Sum_probs=91.0
Q ss_pred EEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEE-EEEEec
Q 001387 744 HFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLI-AEKETK 822 (1088)
Q Consensus 744 s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~-~~~~~~ 822 (1088)
..|..+|..+++.+.++++ +.+..... . .. ...++|++ ..|+++.++...+++.-. .....+
T Consensus 46 ~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~--~~---~~~v~v~~----------~~~~l~~~d~~tG~~~W~~~~~~~~ 108 (238)
T PF13360_consen 46 GNLYALDAKTGKVLWRFDL-PGPISGAP-V--VD---GGRVYVGT----------SDGSLYALDAKTGKVLWSIYLTSSP 108 (238)
T ss_dssp SEEEEEETTTSEEEEEEEC-SSCGGSGE-E--EE---TTEEEEEE----------TTSEEEEEETTTSCEEEEEEE-SSC
T ss_pred CEEEEEECCCCCEEEEeec-ccccccee-e--ec---cccccccc----------ceeeeEecccCCcceeeeecccccc
Confidence 5789999999999999998 33322221 1 11 33445555 235888888766665443 222211
Q ss_pred --C--ceeEeccccCeEEEEE-CCEEEEEEeeeccCccccccccccccc---c-----eEEEEEEEeCCEEEEEeccccE
Q 001387 823 --G--AVYSLNAFNGKLLAAI-NQKIQLYKWMLRDDGTRELQSECGHHG---H-----ILALYVQTRGDFIVVGDLMKSI 889 (1088)
Q Consensus 823 --g--~v~ai~~~~g~Lv~~~-g~~l~v~~~~~~~~~~~~L~~~~~~~~---~-----~~~~~l~~~~~~I~vgD~~~Sv 889 (1088)
+ ...+....++.++++. +..|+.++. ++|+........... . .....+...++.|++++....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~---~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~- 184 (238)
T PF13360_consen 109 PAGVRSSSSPAVDGDRLYVGTSSGKLVALDP---KTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR- 184 (238)
T ss_dssp TCSTB--SEEEEETTEEEEEETCSEEEEEET---TTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS-
T ss_pred ccccccccCceEecCEEEEEeccCcEEEEec---CCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe-
Confidence 1 1112222267788777 678877664 245432222111100 0 011233334568888777665
Q ss_pred EEEEEeccCCeEEEEeccCCCceeEEEEEeeCceEEEEccCCcEEEEeeC
Q 001387 890 SLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKN 939 (1088)
Q Consensus 890 ~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~ 939 (1088)
++.++...++..- .++... ..+.-..+++.+++.+.+|+++.++..
T Consensus 185 -~~~~d~~tg~~~w-~~~~~~--~~~~~~~~~~~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 185 -VVAVDLATGEKLW-SKPISG--IYSLPSVDGGTLYVTSSDGRLYALDLK 230 (238)
T ss_dssp -EEEEETTTTEEEE-EECSS---ECECEECCCTEEEEEETTTEEEEEETT
T ss_pred -EEEEECCCCCEEE-EecCCC--ccCCceeeCCEEEEEeCCCEEEEEECC
Confidence 3445666555333 333222 222234556677777789999999864
No 189
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=56.20 E-value=4.4e+02 Score=31.87 Aligned_cols=156 Identities=10% Similarity=-0.004 Sum_probs=80.5
Q ss_pred eEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC--eE----EEE-EEEEecCceeEecc--ccCeEEE
Q 001387 767 YGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG--KL----QLI-AEKETKGAVYSLNA--FNGKLLA 837 (1088)
Q Consensus 767 ~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~--kl----~~~-~~~~~~g~v~ai~~--~~g~Lv~ 837 (1088)
...+...+.|.......++|||- .|.|+.-.-.+. .. +.+ +-.-..|+|+++.. |...++.
T Consensus 346 ~~~~~t~~~F~~~~p~~FiVGTe----------~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fl 415 (555)
T KOG1587|consen 346 KAVGATSLKFEPTDPNHFIVGTE----------EGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFL 415 (555)
T ss_pred cccceeeEeeccCCCceEEEEcC----------CcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceee
Confidence 34555566677666778999993 366665322211 12 222 22345789999873 3344444
Q ss_pred EEC-CEEEEEEeeeccCcccccccccccccc-eEEEEEEEe--C-CEEEEEeccccEEEEEEeccCCeEEEEeccCCCce
Q 001387 838 AIN-QKIQLYKWMLRDDGTRELQSECGHHGH-ILALYVQTR--G-DFIVVGDLMKSISLLIYKHEEGAIEERARDYNANW 912 (1088)
Q Consensus 838 ~~g-~~l~v~~~~~~~~~~~~L~~~~~~~~~-~~~~~l~~~--~-~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~ 912 (1088)
++| -.++++. ..- .-.+.-.+... .+..++.+. . -.++++|.+.-+.+. +-..+...++++....-.
T Consensus 416 s~gDW~vriWs--~~~----~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iW--DLl~~~~~Pv~s~~~~~~ 487 (555)
T KOG1587|consen 416 SVGDWTVRIWS--EDV----IASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIW--DLLQDDEEPVLSQKVCSP 487 (555)
T ss_pred eeccceeEecc--ccC----CCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehh--hhhccccCCccccccccc
Confidence 444 5666644 210 11111111111 123444443 2 245667777766554 333333344444433333
Q ss_pred eEEEEEeeC-c-eEEEEccCCcEEEEeeCC
Q 001387 913 MSAVEILDD-D-IYLGAENNFNLFTVRKNS 940 (1088)
Q Consensus 913 v~~~~~l~~-~-~~l~~D~~gnl~~l~~~~ 940 (1088)
+....+-.. + .+.++|..|++++++.++
T Consensus 488 ~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 488 ALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 333334444 3 367899999999999864
No 190
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=55.62 E-value=3e+02 Score=32.84 Aligned_cols=71 Identities=17% Similarity=0.148 Sum_probs=45.8
Q ss_pred CceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc--cCeEEEEECCEEEEEEeeeccCcccc
Q 001387 780 SNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF--NGKLLAAINQKIQLYKWMLRDDGTRE 857 (1088)
Q Consensus 780 ~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~--~g~Lv~~~g~~l~v~~~~~~~~~~~~ 857 (1088)
++..++|=|+.. --.++.+.-..-++....+..|-|+|-|=- +.+|++|+|+.++-|-|+ +.+|.
T Consensus 123 k~~iL~VLT~~d----------vSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd---~~qKt 189 (671)
T PF15390_consen 123 KKAILTVLTARD----------VSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWD---SAQKT 189 (671)
T ss_pred CCceEEEEecCc----------eeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEec---Cchhh
Confidence 478888888642 113344442233334445778888887744 348999999999999996 34455
Q ss_pred cccccc
Q 001387 858 LQSECG 863 (1088)
Q Consensus 858 L~~~~~ 863 (1088)
|.+..+
T Consensus 190 L~~Csf 195 (671)
T PF15390_consen 190 LHRCSF 195 (671)
T ss_pred hhhCCc
Confidence 655433
No 191
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=54.82 E-value=46 Score=40.22 Aligned_cols=114 Identities=13% Similarity=0.114 Sum_probs=70.2
Q ss_pred CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeC
Q 001387 713 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVL 792 (1088)
Q Consensus 713 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~ 792 (1088)
++.+++.+|+....+++..++. ++++++|-...+-..++ +...|.+-. |.|......+++-+-
T Consensus 134 Rs~~~ldfh~tep~iliSGSQD---------g~vK~~DlR~~~S~~t~-~~nSESiRD---V~fsp~~~~~F~s~~---- 196 (839)
T KOG0269|consen 134 RSANKLDFHSTEPNILISGSQD---------GTVKCWDLRSKKSKSTF-RSNSESIRD---VKFSPGYGNKFASIH---- 196 (839)
T ss_pred cceeeeeeccCCccEEEecCCC---------ceEEEEeeecccccccc-cccchhhhc---eeeccCCCceEEEec----
Confidence 4677899998877777766654 78999987554433332 335565444 444433333444221
Q ss_pred CCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccccCe-EEEEEC--CEEEEEEee
Q 001387 793 PEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGK-LLAAIN--QKIQLYKWM 849 (1088)
Q Consensus 793 ~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~g~-Lv~~~g--~~l~v~~~~ 849 (1088)
-+|.|..|++...+.-......+.|||+++.--.++ +++..| +++.|+++.
T Consensus 197 ------dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t 250 (839)
T KOG0269|consen 197 ------DSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMT 250 (839)
T ss_pred ------CCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEecc
Confidence 469999999975443333345689999998755444 444444 467777763
No 192
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=54.24 E-value=5.5e+02 Score=32.45 Aligned_cols=96 Identities=18% Similarity=0.260 Sum_probs=63.2
Q ss_pred CeEEE--EecCcEEEEecCCcceeeeeeCCCCCcEEEEE-------ECCCEEEEEECCCeEEEEEEcC---c-EEEEEe-
Q 001387 459 NQLVQ--VTSGSVRLVSSTSRELRNEWKSPPGYSVNVAT-------ANASQVLLATGGGHLVYLEIGD---G-ILTEVK- 524 (1088)
Q Consensus 459 ~~ivQ--Vt~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~-------~~~~~lvv~~~~~~l~~~~~~~---~-~l~~~~- 524 (1088)
+.++| ..++.+.-+|.+.++.+.+|+...+..|..-+ ..+.+.++..+++.+.. +|+ + ++....
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfr--iDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFR--IDPRLSGNKLVDSQS 571 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEE--eccCCCCCceeeccc
Confidence 35666 35788888999888999999986654443332 23567788887777644 444 2 222211
Q ss_pred -eccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEE
Q 001387 525 -HAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFS 564 (1088)
Q Consensus 525 -~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~ 564 (1088)
...-....+|++-. ...+++||.- +|.|++|+
T Consensus 572 k~Y~~~~~Fs~~aTt-------~~G~iavgs~-~G~IRLyd 604 (794)
T PF08553_consen 572 KQYSSKNNFSCFATT-------EDGYIAVGSN-KGDIRLYD 604 (794)
T ss_pred cccccCCCceEEEec-------CCceEEEEeC-CCcEEeec
Confidence 12223456788653 2679999988 99999998
No 193
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=52.05 E-value=2.4e+02 Score=31.73 Aligned_cols=155 Identities=17% Similarity=0.199 Sum_probs=88.9
Q ss_pred eEEEEEE-EcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEe-CC-eEEEEEEEEecCceeEecccc--CeEEEEEC-CE
Q 001387 769 CSILSCS-FSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE-DG-KLQLIAEKETKGAVYSLNAFN--GKLLAAIN-QK 842 (1088)
Q Consensus 769 ~si~~~~-~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~-~~-kl~~~~~~~~~g~v~ai~~~~--g~Lv~~~g-~~ 842 (1088)
.|...+. +..++..+++|+++- + +.++|... +. ..+++....++-..+++.... -+.+++.+ +.
T Consensus 61 ~~~a~~~~~~s~~~~llAv~~~~---------K-~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD 130 (390)
T KOG3914|consen 61 LSLAPALVLTSDSGRLVAVATSS---------K-QRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGD 130 (390)
T ss_pred hhccccccccCCCceEEEEEeCC---------C-ceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCC
Confidence 4444332 334568899999852 2 44555555 22 378888888887777777663 34444333 34
Q ss_pred EEEEE-eeeccCcccccccccccccceEEEEEEEeCCEEEEEeccccEEEEEEecc--CCeEEEEeccCCCceeEEEEEe
Q 001387 843 IQLYK-WMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHE--EGAIEERARDYNANWMSAVEIL 919 (1088)
Q Consensus 843 l~v~~-~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~--~~~l~~~~~D~~~~~v~~~~~l 919 (1088)
++-++ |+.. .+ +......+-...+-+.++-.+.+|+.+|-..=|.+.+|... -.++.+=.++ .|+.....
T Consensus 131 ~~~~di~s~~-~~--~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~e----FVS~isl~ 203 (390)
T KOG3914|consen 131 VYSFDILSAD-SG--RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKE----FVSTISLT 203 (390)
T ss_pred ceeeeeeccc-cc--CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHh----heeeeeec
Confidence 44333 3211 12 22222222223344455556679999999999999887532 1222222333 44455556
Q ss_pred eCceEEEEccCCcEEEEeeCC
Q 001387 920 DDDIYLGAENNFNLFTVRKNS 940 (1088)
Q Consensus 920 ~~~~~l~~D~~gnl~~l~~~~ 940 (1088)
++..++.+--+++|++..+-.
T Consensus 204 ~~~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 204 DNYLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred cCceeeecCCCCcEEEEeccc
Confidence 666677777899999998753
No 194
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=49.95 E-value=4.3e+02 Score=29.94 Aligned_cols=197 Identities=13% Similarity=0.112 Sum_probs=95.3
Q ss_pred cceEEEeecCCCCCCccEEEEEecCceEE-EEecCCCceeeeeecceeccccceeeeecCCCeEEEEe-c-CcEEEEecC
Q 001387 399 IKGMWSLRSSTDDPFDTFLVVSFISETRI-LAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVT-S-GSVRLVSST 475 (1088)
Q Consensus 399 v~~iw~l~~~~~~~~~~~lilS~~~~T~v-l~~~~~~~~~e~~~~~f~~~~~Ti~~~~~~~~~ivQVt-~-~~i~l~~~~ 475 (1088)
...+|.+..+ .+..||.-+..+.|.+ +.+..+..++-. ..-.-...+-++..--++.+.+--+ . ..+++-+..
T Consensus 224 tdEVWfl~FS---~nGkyLAsaSkD~Taiiw~v~~d~~~kl~-~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~ 299 (519)
T KOG0293|consen 224 TDEVWFLQFS---HNGKYLASASKDSTAIIWIVVYDVHFKLK-KTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVD 299 (519)
T ss_pred CCcEEEEEEc---CCCeeEeeccCCceEEEEEEecCcceeee-eeeecccCceEEEEECCCCCeEEecCchHheeeccCC
Confidence 4588999875 3568999888888875 445444333221 0000011122222222333222222 2 234444444
Q ss_pred CcceeeeeeCCCCCcEEEEEEC--CCEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEE
Q 001387 476 SRELRNEWKSPPGYSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVG 553 (1088)
Q Consensus 476 ~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg 553 (1088)
++..........|.+..+|+-. +.-++....++.++....|...+..-+-.. ...|.++++.+ + +++++..
T Consensus 300 tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr-~~~v~dlait~--D----gk~vl~v 372 (519)
T KOG0293|consen 300 TGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVR-DPKVHDLAITY--D----GKYVLLV 372 (519)
T ss_pred cchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccc-cceeEEEEEcC--C----CcEEEEE
Confidence 4333333221123455566643 233444444566666555531111100001 13477888854 2 3444444
Q ss_pred EecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEe
Q 001387 554 MWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLN 611 (1088)
Q Consensus 554 ~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~ 611 (1088)
+- |..+.+|+..+..... -.+.+....|..+. ++..+.++.+.+-.+..+.+.
T Consensus 373 ~~-d~~i~l~~~e~~~dr~--lise~~~its~~iS--~d~k~~LvnL~~qei~LWDl~ 425 (519)
T KOG0293|consen 373 TV-DKKIRLYNREARVDRG--LISEEQPITSFSIS--KDGKLALVNLQDQEIHLWDLE 425 (519)
T ss_pred ec-ccceeeechhhhhhhc--cccccCceeEEEEc--CCCcEEEEEcccCeeEEeecc
Confidence 44 8899999986522211 01111233444433 345678888888888777665
No 195
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=48.44 E-value=1.7e+02 Score=33.92 Aligned_cols=40 Identities=23% Similarity=0.210 Sum_probs=31.1
Q ss_pred EECCCCceEeEEEEEEEcCCC-------ceEEEEEeeeeCCCCCCCcceEEEEEEEe
Q 001387 760 YPLDTFEYGCSILSCSFSDDS-------NVYYCVGTAYVLPEENEPTKGRILVFIVE 809 (1088)
Q Consensus 760 ~~~~~~E~v~si~~~~~~~~~-------~~~i~VGT~~~~~~e~~~~~Gri~v~~i~ 809 (1088)
.+.+++|.++|++.+.+...+ ..+|+||+ +.|.|.+|.-.
T Consensus 51 l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG~----------ssG~vrfyte~ 97 (415)
T PF14655_consen 51 LDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVGT----------SSGYVRFYTEN 97 (415)
T ss_pred ccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEEe----------cccEEEEEecc
Confidence 455667999999998884332 68999998 57999999764
No 196
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=48.05 E-value=51 Score=40.22 Aligned_cols=119 Identities=18% Similarity=0.136 Sum_probs=71.1
Q ss_pred EEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCce--eEeccccCeEE
Q 001387 759 TYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAV--YSLNAFNGKLL 836 (1088)
Q Consensus 759 ~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v--~ai~~~~g~Lv 836 (1088)
.++|.+...+.++.+|.- ..++++|..-- ....|.+-+|-=.. . ..+++.-|| +++|=...+++
T Consensus 8 kIE~~Dsdavsti~SWHP---sePlfAVA~fS------~er~GSVtIfadtG-E----Pqr~Vt~P~hatSLCWHpe~~v 73 (1416)
T KOG3617|consen 8 KIEFLDSDAVSTISSWHP---SEPLFAVASFS------PERGGSVTIFADTG-E----PQRDVTYPVHATSLCWHPEEFV 73 (1416)
T ss_pred eeecccccccccccccCC---CCceeEEEEec------CCCCceEEEEecCC-C----CCcccccceehhhhccChHHHH
Confidence 356777777778888853 37899998632 23567887773221 1 223344444 45665566777
Q ss_pred EEECCE---EEEEEeeeccCcccccccc-cccccceEEEEEEEeCCEEEEEeccccEEEEEEec
Q 001387 837 AAINQK---IQLYKWMLRDDGTRELQSE-CGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKH 896 (1088)
Q Consensus 837 ~~~g~~---l~v~~~~~~~~~~~~L~~~-~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~ 896 (1088)
.++|-. +.++. .+.++...+ ..+......+.-+-.|+.++.+|.+.++.+++|+.
T Consensus 74 La~gwe~g~~~v~~-----~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 74 LAQGWEMGVSDVQK-----TNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred HhhccccceeEEEe-----cCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 777733 23322 122333332 22333334445555799999999999999999983
No 197
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=47.85 E-value=3.1e+02 Score=31.24 Aligned_cols=97 Identities=12% Similarity=0.090 Sum_probs=57.1
Q ss_pred CCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEE
Q 001387 507 GGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVL 586 (1088)
Q Consensus 507 ~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~ 586 (1088)
++.+++-.++.|+-...- ....++|.|+++.+. .+.+++-|++ |+++.++...+...... ....+.-.+.++
T Consensus 265 D~TV~lWD~~~g~p~~s~-~~~~k~Vq~l~wh~~-----~p~~LLsGs~-D~~V~l~D~R~~~~s~~-~wk~~g~VEkv~ 336 (463)
T KOG0270|consen 265 DKTVKLWDVDTGKPKSSI-THHGKKVQTLEWHPY-----EPSVLLSGSY-DGTVALKDCRDPSNSGK-EWKFDGEVEKVA 336 (463)
T ss_pred CceEEEEEcCCCCcceeh-hhcCCceeEEEecCC-----CceEEEeccc-cceEEeeeccCccccCc-eEEeccceEEEE
Confidence 455555566655433221 134678999998763 2678888988 99999998764111000 000011222332
Q ss_pred eeeecCceEEEEEeCCCcEEEEEEec
Q 001387 587 LCAFEGISYLLCALGDGHLLNFLLNM 612 (1088)
Q Consensus 587 ~~~~~~~~~L~vgl~~G~l~~y~~~~ 612 (1088)
.. .....+.++|+.||.|..|.+..
T Consensus 337 w~-~~se~~f~~~tddG~v~~~D~R~ 361 (463)
T KOG0270|consen 337 WD-PHSENSFFVSTDDGTVYYFDIRN 361 (463)
T ss_pred ec-CCCceeEEEecCCceEEeeecCC
Confidence 22 23457899999999988877653
No 198
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=47.12 E-value=1.6e+02 Score=28.00 Aligned_cols=95 Identities=9% Similarity=0.118 Sum_probs=0.0
Q ss_pred EEEEEECCCeEEEEEEcCc------EEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEE
Q 001387 500 QVLLATGGGHLVYLEIGDG------ILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITK 573 (1088)
Q Consensus 500 ~lvv~~~~~~l~~~~~~~~------~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~ 573 (1088)
.++.+...+++....-... .-.++....+..+|+||+-.++.. ....+.|++|+- .++..|++.+..-++.
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~-~~~~D~LliGt~--t~llaYDV~~N~d~Fy 88 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKP-DDGRDCLLIGTQ--TSLLAYDVENNSDLFY 88 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCC-CCCcCEEEEecc--ceEEEEEcccCchhhh
Q ss_pred ecCCCCcCceeEEeeeecC--ceEEEEE
Q 001387 574 EHLGGEIIPRSVLLCAFEG--ISYLLCA 599 (1088)
Q Consensus 574 ~~l~~~~~p~si~~~~~~~--~~~L~vg 599 (1088)
..++ --.+++++-.+++ .+.++||
T Consensus 89 ke~~--DGvn~i~~g~~~~~~~~l~ivG 114 (136)
T PF14781_consen 89 KEVP--DGVNAIVIGKLGDIPSPLVIVG 114 (136)
T ss_pred hhCc--cceeEEEEEecCCCCCcEEEEC
No 199
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=46.54 E-value=4.2e+02 Score=28.86 Aligned_cols=258 Identities=11% Similarity=0.092 Sum_probs=126.6
Q ss_pred CCCCCcEEEEEEC--CCEEEEEECCCeEEEEEEcCcE-EEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEe-cCCEE
Q 001387 485 SPPGYSVNVATAN--ASQVLLATGGGHLVYLEIGDGI-LTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMW-TDISV 560 (1088)
Q Consensus 485 ~~~~~~I~~a~~~--~~~lvv~~~~~~l~~~~~~~~~-l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w-~~~~i 560 (1088)
.+.+.+|.+-..+ +..++.+..+..+.++...+++ ...+.+++-.-+..|+.-. +..++-+.. .|.+|
T Consensus 11 ~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~--------~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 11 RETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHH--------SNTVIHSSTKEDDTI 82 (311)
T ss_pred ccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecC--------CceEEEccCCCCCce
Confidence 3345567777643 4455555556677777776644 3344444443444444221 222332221 27799
Q ss_pred EEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCc
Q 001387 561 RIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNT 640 (1088)
Q Consensus 561 ~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~ 640 (1088)
+.+++.+.+-+-.. -+......++.+.+.+ ...+-+..|..+..+.+...+ .+-...+..+|+ ..++ ..
T Consensus 83 ryLsl~dNkylRYF-~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~----cqg~l~~~~~pi--~AfD--p~ 151 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYF-PGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKK----CQGLLNLSGRPI--AAFD--PE 151 (311)
T ss_pred EEEEeecCceEEEc-CCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCC----CceEEecCCCcc--eeEC--CC
Confidence 99999775554221 0111234456555544 455667778888887776322 222334555554 3443 23
Q ss_pred eEEEEecCCc-e-EEEe----cCCcEEEeecccccceeeeccCCCCCCCeEEEEeCCeEEEEEEcCCCCeEEEEEeCC--
Q 001387 641 THVFAASDRP-T-VIYS----SNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLG-- 712 (1088)
Q Consensus 641 ~~v~~~~~~p-~-~i~~----~~~~~~~~~l~~~~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~~~~~~i~l~-- 712 (1088)
.-+|+.+... . -+|- +++-+....++...-...+.+.-..++..+++.++++ .+.-++...+....++...
T Consensus 152 GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s-~~~~lDAf~G~~~~tfs~~~~ 230 (311)
T KOG1446|consen 152 GLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS-FIYLLDAFDGTVKSTFSGYPN 230 (311)
T ss_pred CcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC-cEEEEEccCCcEeeeEeeccC
Confidence 3466654433 2 2232 1233443334322221222222223344566665443 1223333333333333222
Q ss_pred --CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEE
Q 001387 713 --EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSIL 772 (1088)
Q Consensus 713 --~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~ 772 (1088)
..|---+|.|+++.+... +.. +.|.+.+..++..+....=+..-.+.|+.
T Consensus 231 ~~~~~~~a~ftPds~Fvl~g-s~d---------g~i~vw~~~tg~~v~~~~~~~~~~~~~~~ 282 (311)
T KOG1446|consen 231 AGNLPLSATFTPDSKFVLSG-SDD---------GTIHVWNLETGKKVAVLRGPNGGPVSCVR 282 (311)
T ss_pred CCCcceeEEECCCCcEEEEe-cCC---------CcEEEEEcCCCcEeeEecCCCCCCccccc
Confidence 245566788887755444 322 57888888888777665543333334443
No 200
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=45.99 E-value=45 Score=39.91 Aligned_cols=104 Identities=12% Similarity=0.205 Sum_probs=57.9
Q ss_pred CceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc--cCeEEEEEC--CEEEEEEeeeccCcc
Q 001387 780 SNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF--NGKLLAAIN--QKIQLYKWMLRDDGT 855 (1088)
Q Consensus 780 ~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~--~g~Lv~~~g--~~l~v~~~~~~~~~~ 855 (1088)
..+|+++|+ +.|.+|+|.-..++...+...- ....++.+.+ .++++++.+ ..|.+|.++. .+.
T Consensus 44 t~~~l~~Gs----------S~G~lyl~~R~~~~~~~~~~~~-~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~--~~p 110 (726)
T KOG3621|consen 44 TEEYLAMGS----------SAGSVYLYNRHTGEMRKLKNEG-ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK--ELP 110 (726)
T ss_pred CCceEEEec----------ccceEEEEecCchhhhcccccC-ccceEEEEEecchhHhhhhhcCCceEEeehhhc--cCC
Confidence 478999998 5799999976544433333222 2333333333 456665543 5566776542 122
Q ss_pred ccccccccccc--ceEEEEEEEeCC--EEEEEeccccEEEEEEec
Q 001387 856 RELQSECGHHG--HILALYVQTRGD--FIVVGDLMKSISLLIYKH 896 (1088)
Q Consensus 856 ~~L~~~~~~~~--~~~~~~l~~~~~--~I~vgD~~~Sv~~~~~~~ 896 (1088)
..+.-....+. ...++++.+..| +++.||..-=|.+.+.+.
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 22222211121 234566666654 889999887777665543
No 201
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=45.54 E-value=6.3e+02 Score=30.54 Aligned_cols=171 Identities=15% Similarity=0.151 Sum_probs=97.1
Q ss_pred EEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecC
Q 001387 744 HFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKG 823 (1088)
Q Consensus 744 s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g 823 (1088)
..|++.|..+...+.+ .|.-++- ++..+.+.. +..+++-|+. ...+.+|+...+...-+.. -+.+
T Consensus 228 ~tl~~~~~~~~~~i~~-~l~GH~g--~V~~l~~~~-~~~~lvsgS~----------D~t~rvWd~~sg~C~~~l~-gh~s 292 (537)
T KOG0274|consen 228 STLHLWDLNNGYLILT-RLVGHFG--GVWGLAFPS-GGDKLVSGST----------DKTERVWDCSTGECTHSLQ-GHTS 292 (537)
T ss_pred ceeEEeecccceEEEe-eccCCCC--CceeEEEec-CCCEEEEEec----------CCcEEeEecCCCcEEEEec-CCCc
Confidence 4566777666555433 1222221 223333333 4667777763 3477888876555443332 4567
Q ss_pred ceeEeccccCeEEE-EECCEEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEEEEeccccEEEEEEeccCCe-E
Q 001387 824 AVYSLNAFNGKLLA-AINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGA-I 901 (1088)
Q Consensus 824 ~v~ai~~~~g~Lv~-~~g~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~-l 901 (1088)
.|.++...+.+++. +..++|++++++ ++ ..|.-...+... +.++...+++++.|....+|.+. +....+ |
T Consensus 293 tv~~~~~~~~~~~sgs~D~tVkVW~v~---n~-~~l~l~~~h~~~--V~~v~~~~~~lvsgs~d~~v~VW--~~~~~~cl 364 (537)
T KOG0274|consen 293 SVRCLTIDPFLLVSGSRDNTVKVWDVT---NG-ACLNLLRGHTGP--VNCVQLDEPLLVSGSYDGTVKVW--DPRTGKCL 364 (537)
T ss_pred eEEEEEccCceEeeccCCceEEEEecc---Cc-ceEEEecccccc--EEEEEecCCEEEEEecCceEEEE--Ehhhceee
Confidence 78887766666655 356888998864 22 222221112222 34455568999999888877665 443333 3
Q ss_pred EEEeccCCCceeEEEEEeeC-ceEEEEccCCcEEEEeeCC
Q 001387 902 EERARDYNANWMSAVEILDD-DIYLGAENNFNLFTVRKNS 940 (1088)
Q Consensus 902 ~~~~~D~~~~~v~~~~~l~~-~~~l~~D~~gnl~~l~~~~ 940 (1088)
.-+.. +..+|++. +++. +.++-+-.++.+.+..+..
T Consensus 365 ~sl~g--H~~~V~sl-~~~~~~~~~Sgs~D~~IkvWdl~~ 401 (537)
T KOG0274|consen 365 KSLSG--HTGRVYSL-IVDSENRLLSGSLDTTIKVWDLRT 401 (537)
T ss_pred eeecC--CcceEEEE-EecCcceEEeeeeccceEeecCCc
Confidence 33333 67788887 4444 5666666678788777654
No 202
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=45.10 E-value=62 Score=38.28 Aligned_cols=123 Identities=15% Similarity=0.161 Sum_probs=66.4
Q ss_pred eeeCCCCCcEEEEEECCCEEEEEECCCeEEEEEEcCcEEEEEeec----cCCceeEEEEeCCCCCCCCCccEEEEEEecC
Q 001387 482 EWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHA----QLEYEISCLDINPIGENPSYSQIAAVGMWTD 557 (1088)
Q Consensus 482 ~~~~~~~~~I~~a~~~~~~lvv~~~~~~l~~~~~~~~~l~~~~~~----~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~ 557 (1088)
.|.+|.+.+-..|.-....+.++..+|.+.++....-.+. .++. .+.+.-.-+++..++ .+..+|.--.|
T Consensus 48 ~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr-~ee~~lk~~~aH~nAifDl~wap-----ge~~lVsasGD 121 (720)
T KOG0321|consen 48 LPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR-LEERQLKKPLAHKNAIFDLKWAP-----GESLLVSASGD 121 (720)
T ss_pred CCCCCccccccCCCCccceEEEecCCCceeeecchhhhcc-hhhhhhcccccccceeEeeccCC-----CceeEEEccCC
Confidence 3555543222222223556677777777766654321121 1111 122222234554443 34555555558
Q ss_pred CEEEEEECCCCCceEE-ecCCCCcCceeEEeeeecCceEEEE-EeCCCcEEEEEEec
Q 001387 558 ISVRIFSLPDLNLITK-EHLGGEIIPRSVLLCAFEGISYLLC-ALGDGHLLNFLLNM 612 (1088)
Q Consensus 558 ~~i~i~~l~~l~~~~~-~~l~~~~~p~si~~~~~~~~~~L~v-gl~~G~l~~y~~~~ 612 (1088)
.+++.|++..-+++.. ..+......+|+++...+ +.+|| |-+||.++.+.+..
T Consensus 122 sT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n--~~vF~tGgRDg~illWD~R~ 176 (720)
T KOG0321|consen 122 STIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTN--PAVFCTGGRDGEILLWDCRC 176 (720)
T ss_pred ceeeeeeeccceeecceeecccccccchhhhccCC--CcceeeccCCCcEEEEEEec
Confidence 8999999976444322 223333455677777644 44454 99999999988764
No 203
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=45.01 E-value=7.3e+02 Score=31.18 Aligned_cols=137 Identities=17% Similarity=0.339 Sum_probs=76.1
Q ss_pred EEEEEeeeeEeEEeeeccCC---CCccEEEEEeCcCeEEEEEEeCCCCcEEEEEeeeccCCC-C----c-----c----C
Q 001387 53 MLDVPIYGRIATLELFRPHG---EAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRI-G----R-----P----T 115 (1088)
Q Consensus 53 ~~~~~l~~~i~~i~~~r~~~---~~~d~L~v~~~~~~~~il~~~~~~~~~~t~s~~~~~~~~-~----r-----~----~ 115 (1088)
+.++++|..++.=.....++ ...-.|+... ++.++ -||+....|.++......... + + + .
T Consensus 8 L~~h~lF~~l~~~l~~~~~~~~~~~~rNLl~~~-d~~L~--vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~ 84 (717)
T PF10168_consen 8 LPNHPLFKRLREGLSSSSKGSSERHTRNLLACR-DGDLF--VWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPL 84 (717)
T ss_pred CCCChhHHHhhccCCCCCcccccccceeeEEEe-CCEEE--EEECCCCEEEEEeeccccccccCccccCcceeecCCCCc
Confidence 34556666665533222211 1224444444 45554 489888888887665543211 1 0 1 1
Q ss_pred CCCCeEEECCCCCEEEEEecCCeEEE-EeCC--CCCccccc---e---ecccC--------CceeEEEEeecC-CCCcEE
Q 001387 116 DNGQIGIIDPDCRLIGLHLYDGLFKV-IPFD--NKGQLKEA---F---NIRLE--------ELQVLDIKFLYG-CAKPTI 177 (1088)
Q Consensus 116 ~~~~~l~vdp~~r~~~~~~~~~~l~i-~p~~--~~~~~~~~---~---~i~l~--------~~~i~d~~fl~~-~~~p~l 177 (1088)
..-..+.+.|.|+.+|+....+...+ +|-. ..+.++.. . .+++. ...|..+.+.+. ..++++
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 12246788999999999887764332 3321 12222210 0 11111 246778888754 478999
Q ss_pred EEEEEecCCcceEEEEEEe
Q 001387 178 VVLYQDNKDARHVKTYEVA 196 (1088)
Q Consensus 178 aiL~~~~~~~~~l~~y~~~ 196 (1088)
++|..|+ .++.|.+.
T Consensus 165 ~vLtsdn----~lR~y~~~ 179 (717)
T PF10168_consen 165 VVLTSDN----TLRLYDIS 179 (717)
T ss_pred EEEecCC----EEEEEecC
Confidence 9999987 67888775
No 204
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=44.59 E-value=75 Score=39.76 Aligned_cols=86 Identities=17% Similarity=0.193 Sum_probs=57.9
Q ss_pred CCEEEEEcCCcCeEEEEEEecCcEEeeEEEEEcCccccceEEEEecCCeEEEeeecCCeEEEEEeeCCCCCCCcEEEEee
Q 001387 265 GSRYLLGDHAGLLHLLVITHEKEKVTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLER 344 (1088)
Q Consensus 265 ~~~~ll~~~~G~l~~l~l~~~~~~v~~~~i~~~~~~~~~s~l~~l~~~~lf~gS~~gds~l~~~~~~~~~~~~~~~~~~~ 344 (1088)
+..-+++..+-.||++.-...+..+..-......+.+.-+|++.-.+|++.+||.-|+=.||-=. + .+-.-.
T Consensus 542 ~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~------g--~~AKT~ 613 (794)
T PF08553_consen 542 NEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL------G--KRAKTA 613 (794)
T ss_pred CCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeeccc------c--hhhhhc
Confidence 34578888888888887776664332111222234456789999999999999999998888411 1 122334
Q ss_pred eccC-CceeeeEEec
Q 001387 345 YVNL-GPIVDFCVVD 358 (1088)
Q Consensus 345 l~n~-~Pi~D~~~~~ 358 (1088)
||++ .||+.+.+..
T Consensus 614 lp~lG~pI~~iDvt~ 628 (794)
T PF08553_consen 614 LPGLGDPIIGIDVTA 628 (794)
T ss_pred CCCCCCCeeEEEecC
Confidence 6776 4999998865
No 205
>PHA03098 kelch-like protein; Provisional
Probab=44.32 E-value=2.4e+02 Score=34.03 Aligned_cols=136 Identities=13% Similarity=0.125 Sum_probs=66.7
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccccCeEEEEECC-------EEEEEEeeeccC
Q 001387 781 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQ-------KIQLYKWMLRDD 853 (1088)
Q Consensus 781 ~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~g~Lv~~~g~-------~l~v~~~~~~~~ 853 (1088)
...+++|.... .......++.|+...++.+.+.....+-.-.+++.++|+|++.-|. .+..|+ ..+
T Consensus 295 ~~lyv~GG~~~----~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd--~~~- 367 (534)
T PHA03098 295 NVIYFIGGMNK----NNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWK--PGE- 367 (534)
T ss_pred CEEEEECCCcC----CCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEc--CCC-
Confidence 56677774321 1123346788888777765544332222223455567887766553 233333 222
Q ss_pred cccccccccccccceEEEEEEEeCCEEEE-Eeccc----cEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCceEE
Q 001387 854 GTRELQSECGHHGHILALYVQTRGDFIVV-GDLMK----SISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYL 925 (1088)
Q Consensus 854 ~~~~L~~~~~~~~~~~~~~l~~~~~~I~v-gD~~~----Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l 925 (1088)
.+++ ..+....+-...+..+.++.|++ |-..+ .=.+..|++..++-..++.-+.++...++...++..++
T Consensus 368 ~~W~--~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv 442 (534)
T PHA03098 368 SKWR--EEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYV 442 (534)
T ss_pred Ccee--eCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEE
Confidence 2232 22222222122233456776665 32211 12356788877777776655556654444444443333
No 206
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=44.23 E-value=3.5e+02 Score=29.65 Aligned_cols=110 Identities=20% Similarity=0.307 Sum_probs=65.2
Q ss_pred EEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC-eEEEEEEEEecCceeEec--cccCeEEEEECCEEEEEEeee
Q 001387 774 CSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG-KLQLIAEKETKGAVYSLN--AFNGKLLAAINQKIQLYKWML 850 (1088)
Q Consensus 774 ~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~-kl~~~~~~~~~g~v~ai~--~~~g~Lv~~~g~~l~v~~~~~ 850 (1088)
..|.......++||+-.. |+=+|.-.+. -|.+++ ..+|.||.++ +..++|+++.-..=+|..|+.
T Consensus 213 ~a~sP~~~~~~a~gsY~q----------~~giy~~~~~~pl~llg--gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDi 280 (406)
T KOG2919|consen 213 FAFSPMDSKTLAVGSYGQ----------RVGIYNDDGRRPLQLLG--GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDI 280 (406)
T ss_pred eeccCCCCcceeeecccc----------eeeeEecCCCCceeeec--ccCCCeeeEEeccCcCeecccccCCCeEEEEee
Confidence 345544567899998422 3334444332 355555 7889999875 446789998876666666764
Q ss_pred ccCc--ccccccccccccc-eEEEEEEEeCCEEEEEeccccEEEEEEec
Q 001387 851 RDDG--TRELQSECGHHGH-ILALYVQTRGDFIVVGDLMKSISLLIYKH 896 (1088)
Q Consensus 851 ~~~~--~~~L~~~~~~~~~-~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~ 896 (1088)
+.-. ..+|.+... ++. -.-..+...++.+.-||-.-+|.++..+.
T Consensus 281 R~~~~pv~~L~rhv~-~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 281 RYSRDPVYALERHVG-DTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred hhccchhhhhhhhcc-CccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 4321 122333211 111 11234566788888899999988765554
No 207
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.99 E-value=3.9e+02 Score=28.16 Aligned_cols=110 Identities=17% Similarity=0.161 Sum_probs=63.2
Q ss_pred CCEEEEEECCCeEEEEEEcC-cEEEEEeec-cCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCC--CceEE
Q 001387 498 ASQVLLATGGGHLVYLEIGD-GILTEVKHA-QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDL--NLITK 573 (1088)
Q Consensus 498 ~~~lvv~~~~~~l~~~~~~~-~~l~~~~~~-~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l--~~~~~ 573 (1088)
+..++-+.+++.+..|++.+ +....+... --...+.-++... +....+|+=+.+ ||.+.||.-.+- +..+
T Consensus 23 gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wah----Pk~G~iLAScsY-DgkVIiWke~~g~w~k~~- 96 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAH----PKFGTILASCSY-DGKVIIWKEENGRWTKAY- 96 (299)
T ss_pred cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecc----cccCcEeeEeec-CceEEEEecCCCchhhhh-
Confidence 33444455677777777755 322222111 1234555555532 124667777777 999999996542 1111
Q ss_pred ecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecC
Q 001387 574 EHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMK 613 (1088)
Q Consensus 574 ~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~ 613 (1088)
+.-..+....|+....-+....|.++..||.+-+++++..
T Consensus 97 e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~ 136 (299)
T KOG1332|consen 97 EHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS 136 (299)
T ss_pred hhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC
Confidence 1111123344555555455688999999999999888764
No 208
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=41.40 E-value=4.7e+02 Score=27.95 Aligned_cols=264 Identities=18% Similarity=0.178 Sum_probs=140.6
Q ss_pred CeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCC
Q 001387 716 RRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEE 795 (1088)
Q Consensus 716 ~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e 795 (1088)
..|-|.-+..++.-+ .+. +..-+.-..+++.+.+|+=-.+-..+|-..| ...+++-|.+-+
T Consensus 14 TqiKyN~eGDLlFsc-aKD---------~~~~vw~s~nGerlGty~GHtGavW~~Did~-----~s~~liTGSAD~---- 74 (327)
T KOG0643|consen 14 TQIKYNREGDLLFSC-AKD---------STPTVWYSLNGERLGTYDGHTGAVWCCDIDW-----DSKHLITGSADQ---- 74 (327)
T ss_pred ceEEecCCCcEEEEe-cCC---------CCceEEEecCCceeeeecCCCceEEEEEecC-----Ccceeeeccccc----
Confidence 456677666655433 322 1122222236677777764444333222222 356777777532
Q ss_pred CCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cCeE-EEE----ECCE--EEEEEeeeccCc----ccc-ccccc
Q 001387 796 NEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKL-LAA----INQK--IQLYKWMLRDDG----TRE-LQSEC 862 (1088)
Q Consensus 796 ~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g~L-v~~----~g~~--l~v~~~~~~~~~----~~~-L~~~~ 862 (1088)
.+.+|++..+| .++..+++.||-.+.-. +|.+ +++ +|+. |.+|++ +++. .++ +.+..
T Consensus 75 ------t~kLWDv~tGk--~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi--~~~~~~~~s~ep~~kI~ 144 (327)
T KOG0643|consen 75 ------TAKLWDVETGK--QLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDI--RDDSSDIDSEEPYLKIP 144 (327)
T ss_pred ------eeEEEEcCCCc--EEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEc--cCChhhhcccCceEEec
Confidence 56788887654 46667788888877643 4544 444 3443 345554 3221 111 11111
Q ss_pred ccccceEEEEE--EEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCce-EEEEccCCcEEEEeeC
Q 001387 863 GHHGHILALYV--QTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDI-YLGAENNFNLFTVRKN 939 (1088)
Q Consensus 863 ~~~~~~~~~~l--~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~-~l~~D~~gnl~~l~~~ 939 (1088)
... .-+++. ...+.+|+.|+-.-++.. |+...++...-..+.+...++..++-.+.+ ++.+-++.+-.+++..
T Consensus 145 t~~--skit~a~Wg~l~~~ii~Ghe~G~is~--~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~ 220 (327)
T KOG0643|consen 145 TPD--SKITSALWGPLGETIIAGHEDGSISI--YDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVR 220 (327)
T ss_pred CCc--cceeeeeecccCCEEEEecCCCcEEE--EEcccCceeeechhhhccccccccccCCcceEEecccCccceeeecc
Confidence 001 112222 345889999999999875 566554333333344555777777766655 5667677777776643
Q ss_pred CCCCCcccccceeEEEEEEcCCccceEEeeeeeecCCCCCCCCccEEEEEcccccEEEEEe--cChhHHHHHH-HHHHHH
Q 001387 940 SEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIAS--LPHEQYLFLE-KLQTNL 1016 (1088)
Q Consensus 940 ~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~~l~~t~~G~i~~l~~--l~~~~~~~L~-~lq~~l 1016 (1088)
.|+..-.|..-..||+-.... ...+.++.|+.+-.=-.-+. ..+=+.|++. .+|..+
T Consensus 221 ----------tl~v~Kty~te~PvN~aaisP----------~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEi 280 (327)
T KOG0643|consen 221 ----------TLEVLKTYTTERPVNTAAISP----------LLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEI 280 (327)
T ss_pred ----------ceeeEEEeeecccccceeccc----------ccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHh
Confidence 567777777777777643211 12233333332211111111 1122334443 467778
Q ss_pred HhccCCCCCCCccccc
Q 001387 1017 RKVIKGVGGLNHEQWR 1032 (1088)
Q Consensus 1017 ~~~~~~~~gl~~~~~R 1032 (1088)
.+.--|+|-+|..+|.
T Consensus 281 grvkGHFGPINsvAfh 296 (327)
T KOG0643|consen 281 GRVKGHFGPINSVAFH 296 (327)
T ss_pred ccccccccCcceeEEC
Confidence 8887888888877654
No 209
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=41.12 E-value=6.5e+02 Score=31.06 Aligned_cols=164 Identities=16% Similarity=0.129 Sum_probs=79.4
Q ss_pred CccEEEEEEecCCEEEEEECCC---CCc--eEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccc
Q 001387 546 YSQIAAVGMWTDISVRIFSLPD---LNL--ITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDR 620 (1088)
Q Consensus 546 ~~~~~~vg~w~~~~i~i~~l~~---l~~--~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~ 620 (1088)
.+++++.+.. +|.|.+|+|.. ... ++.++-. ..+.+-+...+ ..+|+-|..||.+-.|.+......-.
T Consensus 99 ~~NlIAT~s~-nG~i~vWdlnk~~rnk~l~~f~EH~R---s~~~ldfh~te-p~iliSGSQDg~vK~~DlR~~~S~~t-- 171 (839)
T KOG0269|consen 99 YSNLIATCST-NGVISVWDLNKSIRNKLLTVFNEHER---SANKLDFHSTE-PNILISGSQDGTVKCWDLRSKKSKST-- 171 (839)
T ss_pred hhhhheeecC-CCcEEEEecCccccchhhhHhhhhcc---ceeeeeeccCC-ccEEEecCCCceEEEEeeeccccccc--
Confidence 4566666655 99999999864 122 2222221 23333333322 34567799999999999875432111
Q ss_pred eeeecCc-cceeEEEEEeCCceEEEEec-CCceEEEec--CCcEEEeec--ccccceeeeccCCCCCCCeEEEEe---CC
Q 001387 621 KKVSLGT-QPITLRTFSSKNTTHVFAAS-DRPTVIYSS--NKKLLYSNV--NLKEVSHMCPFNSAAFPDSLAIAK---EG 691 (1088)
Q Consensus 621 ~~~~lG~-~pv~l~~~~~~~~~~v~~~~-~~p~~i~~~--~~~~~~~~l--~~~~i~~~~~f~~~~~~~~l~~~~---~~ 691 (1088)
+.|. ..++=..|. .+....|+.+ |.-++..++ +++.-+..+ +.+++ ..+.++ |+.-.+++ ++
T Consensus 172 ---~~~nSESiRDV~fs-p~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV-~c~nwh----Pnr~~lATGGRDK 242 (839)
T KOG0269|consen 172 ---FRSNSESIRDVKFS-PGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPV-LCLNWH----PNREWLATGGRDK 242 (839)
T ss_pred ---ccccchhhhceeec-cCCCceEEEecCCceEEEeeccCchhHHHHhhcccCce-EEEeec----CCCceeeecCCCc
Confidence 1111 112211221 1223344433 333433332 111110111 11222 223332 34444455 45
Q ss_pred eEEEEEEcCCCCeEEEEEeCCCccCeEEEecCCC
Q 001387 692 ELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSR 725 (1088)
Q Consensus 692 ~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~ 725 (1088)
.++|=.+........-.|.......|+.+-|+..
T Consensus 243 ~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~ 276 (839)
T KOG0269|consen 243 MVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARS 276 (839)
T ss_pred cEEEEeccCCCccceeEEeecceeeeeeeccCcc
Confidence 5666666554555566666677777888777655
No 210
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.68 E-value=7.3e+02 Score=29.90 Aligned_cols=112 Identities=18% Similarity=0.281 Sum_probs=61.6
Q ss_pred ccceEEEEecCC---eEEEeeecCCeEEEEEe-eCCCCCCCcEEEEeeeccCCceeeeEEeccCCCCCceEEEEeeCCCC
Q 001387 301 SIASTISYLDNA---VVYIGSSYGDSQLIKLN-LQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKD 376 (1088)
Q Consensus 301 ~~~s~l~~l~~~---~lf~gS~~gds~l~~~~-~~~~~~~~~~~~~~~l~n~~Pi~D~~~~~~~~~~~~~l~~~sG~g~~ 376 (1088)
.-..|+.+...| +|.-|++ -.++|+= -+. -..+++|+...-=+.++...+ .-.|+ .+| +..
T Consensus 184 kGVN~Vdyy~~gdkpylIsgaD---D~tiKvWDyQt------k~CV~TLeGHt~Nvs~v~fhp----~lpii-isg-sED 248 (794)
T KOG0276|consen 184 KGVNCVDYYTGGDKPYLISGAD---DLTIKVWDYQT------KSCVQTLEGHTNNVSFVFFHP----ELPII-ISG-SED 248 (794)
T ss_pred cCcceEEeccCCCcceEEecCC---CceEEEeecch------HHHHHHhhcccccceEEEecC----CCcEE-EEe-cCC
Confidence 344677777766 7776653 3333322 111 123445554443334444332 23444 344 467
Q ss_pred ceEEEEecCCceeEEEeeeCC-CcceEEEeecCCCCCCccEEEEEecCceEEEEecCC
Q 001387 377 GSLRIVRNGIGINEQASVELQ-GIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLE 433 (1088)
Q Consensus 377 g~L~~lr~gi~~~~~~~~~l~-~v~~iw~l~~~~~~~~~~~lilS~~~~T~vl~~~~~ 433 (1088)
|++++.+..- .+.. -.+. |..++|++.... .+.-+.+.+.+.+.+++++.+
T Consensus 249 GTvriWhs~T-y~lE--~tLn~gleRvW~I~~~k---~~~~i~vG~Deg~i~v~lgre 300 (794)
T KOG0276|consen 249 GTVRIWNSKT-YKLE--KTLNYGLERVWCIAAHK---GDGKIAVGFDEGSVTVKLGRE 300 (794)
T ss_pred ccEEEecCcc-eehh--hhhhcCCceEEEEeecC---CCCeEEEeccCCcEEEEccCC
Confidence 8999887642 1111 1233 566999997542 234488889888888888765
No 211
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=40.51 E-value=9.6e+02 Score=31.28 Aligned_cols=89 Identities=15% Similarity=0.291 Sum_probs=58.7
Q ss_pred eeeeeeCC----CCCcEEEEE--ECCCEEEEEECCCeEEEEEEc----CcEEEEEeeccCCceeEEEEeCCCCCCCCCcc
Q 001387 479 LRNEWKSP----PGYSVNVAT--ANASQVLLATGGGHLVYLEIG----DGILTEVKHAQLEYEISCLDINPIGENPSYSQ 548 (1088)
Q Consensus 479 ~~~~~~~~----~~~~I~~a~--~~~~~lvv~~~~~~l~~~~~~----~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~ 548 (1088)
.+.+|..+ .+..|+... .+...+++++.+|.++.+..+ ...++.++ .++..|.|++.+| ...
T Consensus 62 ~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG--~vd~GI~a~~WSP------D~E 133 (928)
T PF04762_consen 62 VLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVG--SVDSGILAASWSP------DEE 133 (928)
T ss_pred EEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEE--EEcCcEEEEEECC------CcC
Confidence 45666532 334576666 346678888889998887433 24555565 4567899999876 256
Q ss_pred EEEEEEecCCEEEEEECCCCCceEEecCC
Q 001387 549 IAAVGMWTDISVRIFSLPDLNLITKEHLG 577 (1088)
Q Consensus 549 ~~~vg~w~~~~i~i~~l~~l~~~~~~~l~ 577 (1088)
.+++.+- ++.+.+.+ .+++++...++.
T Consensus 134 lla~vT~-~~~l~~mt-~~fd~i~E~~l~ 160 (928)
T PF04762_consen 134 LLALVTG-EGNLLLMT-RDFDPISEVPLD 160 (928)
T ss_pred EEEEEeC-CCEEEEEe-ccceEEEEeecC
Confidence 7788776 77777765 567777665554
No 212
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.94 E-value=1.5e+02 Score=36.27 Aligned_cols=166 Identities=14% Similarity=0.110 Sum_probs=0.0
Q ss_pred eEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeec--CceEEEEEeCCCcEEEEE
Q 001387 532 ISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFE--GISYLLCALGDGHLLNFL 609 (1088)
Q Consensus 532 is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~--~~~~L~vgl~~G~l~~y~ 609 (1088)
+||.++. ..+++.|+. .|.++++..+. .|+....+.-. +..|+..+..||.+++..
T Consensus 42 is~~av~--------~~~~~~GtH-~g~v~~~~~~~-------------~~~~~~~~s~~~~~Gey~asCS~DGkv~I~s 99 (846)
T KOG2066|consen 42 ISCCAVH--------DKFFALGTH-RGAVYLTTCQG-------------NPKTNFDHSSSILEGEYVASCSDDGKVVIGS 99 (846)
T ss_pred HHHHHhh--------cceeeeccc-cceEEEEecCC-------------cccccccccccccCCceEEEecCCCcEEEee
Q ss_pred EecCCCcc-----ccceeeecCcc--ceeEEEEEeCCceEEEEecCCceEEEecCCcEEEeecccccceeeeccCCCCCC
Q 001387 610 LNMKTGEL-----TDRKKVSLGTQ--PITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFP 682 (1088)
Q Consensus 610 ~~~~~~~l-----~~~~~~~lG~~--pv~l~~~~~~~~~~v~~~~~~p~~i~~~~~~~~~~~l~~~~i~~~~~f~~~~~~ 682 (1088)
+......- +..+.+.+-.- --.-.+|-.+|..+ ++..+|-|+-....- ...-..++|.+++--.+
T Consensus 100 l~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v---~l~~~eG~I~~i~W~g~---- 171 (846)
T KOG2066|consen 100 LFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV---VLSEGEGPIHSIKWRGN---- 171 (846)
T ss_pred ccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce---eeecCccceEEEEecCc----
Q ss_pred CeEEEEeCCeEEEEEEcCCC-----CeEEEEEeCCCccCeEEEecCCCEEE
Q 001387 683 DSLAIAKEGELTIGTIDDIQ-----KLHIRSIPLGEHPRRICHQEQSRTFA 728 (1088)
Q Consensus 683 ~~l~~~~~~~l~i~~l~~~~-----~~~~~~i~l~~tp~~i~y~~~~~~~~ 728 (1088)
.++.+++.+++++..+..+ .++.++......|-++.+.++.++.+
T Consensus 172 -lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI 221 (846)
T KOG2066|consen 172 -LIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI 221 (846)
T ss_pred -EEEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE
No 213
>PF02978 SRP_SPB: Signal peptide binding domain; InterPro: IPR004125 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the M domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle; PDB: 2FFH_B 3NDB_B 2V3C_C 1QZW_G 1QZX_B 3KL4_A 2JQE_A 1HQ1_A 1RY1_W 1MFQ_C ....
Probab=39.79 E-value=42 Score=30.39 Aligned_cols=29 Identities=14% Similarity=0.368 Sum_probs=24.2
Q ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Q 001387 1059 SRTRMDEISKTMNVSVEELCKRVEELTRL 1087 (1088)
Q Consensus 1059 ~~~~q~~i~~~~~~~~~~i~~~l~~l~~~ 1087 (1088)
...++.+||++.|++++|+.++|.+...+
T Consensus 72 ~~sR~~RIA~GSG~~~~eV~~ll~~f~~~ 100 (104)
T PF02978_consen 72 NESRRRRIARGSGTTVQEVNELLKQFKQM 100 (104)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34889999999999999999999887654
No 214
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=39.41 E-value=3.8e+02 Score=32.02 Aligned_cols=75 Identities=16% Similarity=0.179 Sum_probs=55.6
Q ss_pred eEEEEEeCCC--ccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEe--CCCceEEEEEECCCCceEeEEEEEEEcCC
Q 001387 704 LHIRSIPLGE--HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLD--DQTFEFISTYPLDTFEYGCSILSCSFSDD 779 (1088)
Q Consensus 704 ~~~~~i~l~~--tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid--~~t~~~i~~~~~~~~E~v~si~~~~~~~~ 779 (1088)
...||+.+.+ .|.-|+|++..+..+|++..- ..|.+++ +.++-.+..+.|+.+|++-.+|.. .+
T Consensus 328 T~trKV~IPGILvPDliAfn~kaq~VAVASNTc---------n~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFl---td 395 (671)
T PF15390_consen 328 TTTRKVSIPGILVPDLIAFNPKAQVVAVASNTC---------NIILVYSVTPSSMPNIQQIQLESNERPKGICFL---TD 395 (671)
T ss_pred EEeeeeccccccccceeeeCCcCCEEEEEecCC---------cEEEEEEeccccCCCeeEEEcccCCCCceeeEc---cC
Confidence 3578888876 799999999999999997542 2344443 466778899999999999888764 23
Q ss_pred CceEEEEEeee
Q 001387 780 SNVYYCVGTAY 790 (1088)
Q Consensus 780 ~~~~i~VGT~~ 790 (1088)
+--.|.||--+
T Consensus 396 klLLilVGkqK 406 (671)
T PF15390_consen 396 KLLLILVGKQK 406 (671)
T ss_pred CeEEEEecccc
Confidence 45566777544
No 215
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=38.44 E-value=7.3e+02 Score=29.26 Aligned_cols=161 Identities=17% Similarity=0.263 Sum_probs=77.4
Q ss_pred CceEEEEecCCCceeeeeecce-----eccccceeeeecCC--CeEEEEecCcEEEEecCCcceeeeeeCCCCCcEEEEE
Q 001387 423 SETRILAMNLEDELEETEIEGF-----CSQTQTLFCHDAIY--NQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVAT 495 (1088)
Q Consensus 423 ~~T~vl~~~~~~~~~e~~~~~f-----~~~~~Ti~~~~~~~--~~ivQVt~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~ 495 (1088)
+.|-++..++++.+.-.+-+|. .-++..++|...+. +.++-.--..+.+=...-..++..|+.-+| -|.+++
T Consensus 115 dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDG-iiL~~~ 193 (737)
T KOG1524|consen 115 DGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDG-LVLSLS 193 (737)
T ss_pred CCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCc-EEEEee
Confidence 3455555555443333333332 22455666666532 233333333333222222346778987665 466666
Q ss_pred ECCCEEEEEECCCeEEEEEE-cC-cEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEE
Q 001387 496 ANASQVLLATGGGHLVYLEI-GD-GILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITK 573 (1088)
Q Consensus 496 ~~~~~lvv~~~~~~l~~~~~-~~-~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~ 573 (1088)
-+...=+|+. +|+=.-|.+ |. |.. ...+..-+..|++++++| ....++|.+ +.+++ +-|+-
T Consensus 194 W~~~s~lI~s-gGED~kfKvWD~~G~~-Lf~S~~~ey~ITSva~np-------d~~~~v~S~--nt~R~-~~p~~----- 256 (737)
T KOG1524|consen 194 WSTQSNIIAS-GGEDFRFKIWDAQGAN-LFTSAAEEYAITSVAFNP-------EKDYLLWSY--NTARF-SSPRV----- 256 (737)
T ss_pred cCccccceee-cCCceeEEeecccCcc-cccCChhccceeeeeecc-------ccceeeeee--eeeee-cCCCc-----
Confidence 6633223333 444333344 32 321 122334467789999976 355566544 34441 11111
Q ss_pred ecCCCCcCceeEEeeee-cCceEEEEEeCCCcEEEEEE
Q 001387 574 EHLGGEIIPRSVLLCAF-EGISYLLCALGDGHLLNFLL 610 (1088)
Q Consensus 574 ~~l~~~~~p~si~~~~~-~~~~~L~vgl~~G~l~~y~~ 610 (1088)
-|+.-... .+...+-+|+++|.++.-..
T Consensus 257 ---------GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 257 ---------GSIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred ---------cceEEEEEcCCCceeeccccCceEEEeee
Confidence 12211111 24577889999999876443
No 216
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=36.91 E-value=94 Score=38.24 Aligned_cols=63 Identities=13% Similarity=0.234 Sum_probs=48.9
Q ss_pred CCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCc-------eEEEEccCCcEEEEeeC
Q 001387 877 GDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDD-------IYLGAENNFNLFTVRKN 939 (1088)
Q Consensus 877 ~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~-------~~l~~D~~gnl~~l~~~ 939 (1088)
-++|+||+=..+|+++.|...+.+............+=++.|++++ .++++|-.|++++++..
T Consensus 177 ~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 177 SRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred ceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 4689999999999999998765555444333466677789999764 46789999999999883
No 217
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=36.87 E-value=6.8e+02 Score=28.45 Aligned_cols=69 Identities=16% Similarity=0.154 Sum_probs=40.7
Q ss_pred EEEEEEC--CCEEEEEECCCeEEEEEEcCcEEEEEeecc-CCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCC
Q 001387 491 VNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQ-LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD 567 (1088)
Q Consensus 491 I~~a~~~--~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~-l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~ 567 (1088)
|.++..+ +++++-...+..+..|++. .+.++.... -.+++.++.-.|+. ...+..|.| ||++..|.++-
T Consensus 267 Vl~~~f~~n~N~Llt~skD~~~kv~DiR--~mkEl~~~r~Hkkdv~~~~WhP~~-----~~lftsgg~-Dgsvvh~~v~~ 338 (464)
T KOG0284|consen 267 VLAVKFNPNGNWLLTGSKDQSCKVFDIR--TMKELFTYRGHKKDVTSLTWHPLN-----ESLFTSGGS-DGSVVHWVVGL 338 (464)
T ss_pred EEEEEEcCCCCeeEEccCCceEEEEehh--HhHHHHHhhcchhhheeecccccc-----ccceeeccC-CCceEEEeccc
Confidence 4444444 4344433345555555543 122222111 35678888776654 568888889 99999999874
No 218
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=36.87 E-value=6.4e+02 Score=28.20 Aligned_cols=31 Identities=6% Similarity=0.174 Sum_probs=24.3
Q ss_pred ceeEEEEEeeCceEEEEccCCcEEEEeeCCC
Q 001387 911 NWMSAVEILDDDIYLGAENNFNLFTVRKNSE 941 (1088)
Q Consensus 911 ~~v~~~~~l~~~~~l~~D~~gnl~~l~~~~~ 941 (1088)
.-+.+++|+++-.++.+..+-||++++.+-.
T Consensus 294 ~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 294 KTIKSMTFIDDYTVATGSDHWGIHIWKLPRA 324 (609)
T ss_pred eeeeeeeeecceeeeccCcccceEEEecCCC
Confidence 3445788998878887778899999998743
No 219
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=35.68 E-value=45 Score=28.40 Aligned_cols=27 Identities=11% Similarity=0.294 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhc
Q 001387 1060 RTRMDEISKTMNVSVEELCKRVEELTR 1086 (1088)
Q Consensus 1060 ~~~q~~i~~~~~~~~~~i~~~l~~l~~ 1086 (1088)
..-.++|++.+|.++..|++.|+.||.
T Consensus 19 ~~SGe~La~~LgiSRtaVwK~Iq~Lr~ 45 (79)
T COG1654 19 FVSGEKLAEELGISRTAVWKHIQQLRE 45 (79)
T ss_pred cccHHHHHHHHCccHHHHHHHHHHHHH
Confidence 356689999999999999999999984
No 220
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=35.56 E-value=6.7e+02 Score=28.03 Aligned_cols=72 Identities=17% Similarity=0.255 Sum_probs=43.9
Q ss_pred EEEEEEC--CCEEEE-EECCCeEEEEEEcCcE-EEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECC
Q 001387 491 VNVATAN--ASQVLL-ATGGGHLVYLEIGDGI-LTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLP 566 (1088)
Q Consensus 491 I~~a~~~--~~~lvv-~~~~~~l~~~~~~~~~-l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~ 566 (1088)
|..|.-+ +.+++. ...++.+.+.++..+. +.++ .-.+..|..++|.| .+.|++=+.. |+++++|++.
T Consensus 294 i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL--~ghdnwVr~~af~p------~Gkyi~ScaD-Dktlrvwdl~ 364 (406)
T KOG0295|consen 294 ISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL--VGHDNWVRGVAFSP------GGKYILSCAD-DKTLRVWDLK 364 (406)
T ss_pred hhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE--ecccceeeeeEEcC------CCeEEEEEec-CCcEEEEEec
Confidence 4444432 334444 3346777776766553 2222 23567888888865 3566665544 9999999998
Q ss_pred CCCce
Q 001387 567 DLNLI 571 (1088)
Q Consensus 567 ~l~~~ 571 (1088)
+....
T Consensus 365 ~~~cm 369 (406)
T KOG0295|consen 365 NLQCM 369 (406)
T ss_pred cceee
Confidence 76543
No 221
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=35.02 E-value=6.3e+02 Score=27.51 Aligned_cols=72 Identities=17% Similarity=0.263 Sum_probs=42.0
Q ss_pred eEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCc------eEEecCC-CCcCceeEEeeeec-CceEEEEEeCCC
Q 001387 532 ISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNL------ITKEHLG-GEIIPRSVLLCAFE-GISYLLCALGDG 603 (1088)
Q Consensus 532 is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~------~~~~~l~-~~~~p~si~~~~~~-~~~~L~vgl~~G 603 (1088)
+-|-.++| .+.+++-|.- ||-|++|+.-+-++ ...+.+. .+. .++...+. +...|--|..||
T Consensus 216 ~EcA~FSP------DgqyLvsgSv-DGFiEVWny~~GKlrKDLkYQAqd~fMMmd~---aVlci~FSRDsEMlAsGsqDG 285 (508)
T KOG0275|consen 216 VECARFSP------DGQYLVSGSV-DGFIEVWNYTTGKLRKDLKYQAQDNFMMMDD---AVLCISFSRDSEMLASGSQDG 285 (508)
T ss_pred hhheeeCC------CCceEeeccc-cceeeeehhccchhhhhhhhhhhcceeeccc---ceEEEeecccHHHhhccCcCC
Confidence 44656654 3678888877 99999999754222 1111111 111 12222332 334566689999
Q ss_pred cEEEEEEecC
Q 001387 604 HLLNFLLNMK 613 (1088)
Q Consensus 604 ~l~~y~~~~~ 613 (1088)
.+-++++...
T Consensus 286 kIKvWri~tG 295 (508)
T KOG0275|consen 286 KIKVWRIETG 295 (508)
T ss_pred cEEEEEEecc
Confidence 9999988753
No 222
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=34.89 E-value=8.9e+02 Score=29.26 Aligned_cols=234 Identities=12% Similarity=0.093 Sum_probs=125.5
Q ss_pred ccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCC
Q 001387 714 HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLP 793 (1088)
Q Consensus 714 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~ 793 (1088)
....+.|....+.++-++.+ .++++-|-.+++....+. ...+.+.|+... ++..++.+.
T Consensus 251 ~V~~l~~~~~~~~lvsgS~D----------~t~rvWd~~sg~C~~~l~-gh~stv~~~~~~-------~~~~~sgs~--- 309 (537)
T KOG0274|consen 251 GVWGLAFPSGGDKLVSGSTD----------KTERVWDCSTGECTHSLQ-GHTSSVRCLTID-------PFLLVSGSR--- 309 (537)
T ss_pred CceeEEEecCCCEEEEEecC----------CcEEeEecCCCcEEEEec-CCCceEEEEEcc-------CceEeeccC---
Confidence 35566666544555555444 368888988888887777 344666776553 334444221
Q ss_pred CCCCCcceEEEEEEEeCCe-EEEEEEEEecCceeEeccccCeEEEEEC-CEEEEEEeeeccCcccccccccccccce-EE
Q 001387 794 EENEPTKGRILVFIVEDGK-LQLIAEKETKGAVYSLNAFNGKLLAAIN-QKIQLYKWMLRDDGTRELQSECGHHGHI-LA 870 (1088)
Q Consensus 794 ~e~~~~~Gri~v~~i~~~k-l~~~~~~~~~g~v~ai~~~~g~Lv~~~g-~~l~v~~~~~~~~~~~~L~~~~~~~~~~-~~ 870 (1088)
---|++|++.+++ +.++.. +.++|.++..-.+.++++.- ..|.+|+.. . -+.+. ...++. .+
T Consensus 310 ------D~tVkVW~v~n~~~l~l~~~--h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~---~--~~cl~--sl~gH~~~V 374 (537)
T KOG0274|consen 310 ------DNTVKVWDVTNGACLNLLRG--HTGPVNCVQLDEPLLVSGSYDGTVKVWDPR---T--GKCLK--SLSGHTGRV 374 (537)
T ss_pred ------CceEEEEeccCcceEEEecc--ccccEEEEEecCCEEEEEecCceEEEEEhh---h--ceeee--eecCCcceE
Confidence 1267888888655 344333 89999999988778877654 456776642 1 11211 122232 34
Q ss_pred EEEEEeC-CEEEEEeccccEEEEEEeccCC-eEEEEeccCCCceeEEEEEeeCceEEEEccCCcEEEEeeCCCCCCcccc
Q 001387 871 LYVQTRG-DFIVVGDLMKSISLLIYKHEEG-AIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEER 948 (1088)
Q Consensus 871 ~~l~~~~-~~I~vgD~~~Sv~~~~~~~~~~-~l~~~~~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~~~~~~~~~~ 948 (1088)
.++...+ ++++-|-..+++.+. +.+.. +.... =..+..++..-.+.++.++.+-.+|-+.+.+...... .
T Consensus 375 ~sl~~~~~~~~~Sgs~D~~IkvW--dl~~~~~c~~t--l~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~----~ 446 (537)
T KOG0274|consen 375 YSLIVDSENRLLSGSLDTTIKVW--DLRTKRKCIHT--LQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGEC----L 446 (537)
T ss_pred EEEEecCcceEEeeeeccceEee--cCCchhhhhhh--hcCCcccccccccccceeEeccccccEEEeecccCce----e
Confidence 4555556 788878777777664 44333 11111 1122223322223334455666688888875442211 0
Q ss_pred cceeEEEEEEcCCccceEEeeeeeecCCCCCCCCccEEEEEcccccEEEEEec-ChhHHHHH
Q 001387 949 GRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASL-PHEQYLFL 1009 (1088)
Q Consensus 949 ~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~~l~~t~~G~i~~l~~l-~~~~~~~L 1009 (1088)
+.+... |.+ .|+.+. ...+.++.++.+|++... .+ +....+.+
T Consensus 447 ~~~~~~---~~~-~v~~l~-------------~~~~~il~s~~~~~~~l~-dl~~~~~~~~l 490 (537)
T KOG0274|consen 447 RTLEGR---HVG-GVSALA-------------LGKEEILCSSDDGSVKLW-DLRSGTLIRTL 490 (537)
T ss_pred eeeccC---Ccc-cEEEee-------------cCcceEEEEecCCeeEEE-ecccCchhhhh
Confidence 111111 111 121211 124678899999999966 45 33334433
No 223
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=34.84 E-value=8.1e+02 Score=28.77 Aligned_cols=138 Identities=15% Similarity=0.147 Sum_probs=66.0
Q ss_pred CCCeEEECCCCCEEEEEecCCeEEEEeCCCCCccccceecccCCceeEEEEeecCCCCcEEEEEEEecCCcceEEEEEEe
Q 001387 117 NGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLYQDNKDARHVKTYEVA 196 (1088)
Q Consensus 117 ~~~~l~vdp~~r~~~~~~~~~~l~i~p~~~~~~~~~~~~i~l~~~~i~d~~fl~~~~~p~laiL~~~~~~~~~l~~y~~~ 196 (1088)
.+..+..+|+||++++ +.+|...|+.-.. ..+ -..+.-.+++|.. .-.+|++.... .+..|
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~---~r~-----k~~G~g~~~vw~~---~n~yAv~~~~~----~I~I~--- 94 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALA---WRN-----KAFGSGLSFVWSS---RNRYAVLESSS----TIKIY--- 94 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTT---TEE-----EEEEE-SEEEE-T---SSEEEEE-TTS-----EEEE---
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccC---Ccc-----cccCceeEEEEec---CccEEEEECCC----eEEEE---
Confidence 3568899999999999 6667677765211 000 0124556778874 44588877622 34443
Q ss_pred ccCCCeeeecccccccCCCCCEEEecCCCCCceEEEeCC-eEEEEcCCc---eeeeecCCceeeeeeEEecCCCEEEEEc
Q 001387 197 LKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEE-TIVYCSANA---FKAIPIRPSITKAYGRVDADGSRYLLGD 272 (1088)
Q Consensus 197 ~~~~~~~~~~~~~~~lp~~~~~liplp~~~~G~lv~~~~-~i~y~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 272 (1088)
+++.........+|..+..|.+ |-+|.+..+ .|+++|... ...+.+++-.-..| ..+++.+.+..
T Consensus 95 ---kn~~~~~~k~i~~~~~~~~If~-----G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~vk~V~W---s~~g~~val~t 163 (443)
T PF04053_consen 95 ---KNFKNEVVKSIKLPFSVEKIFG-----GNLLGVKSSDFICFYDWETGKLIRRIDVSAVKYVIW---SDDGELVALVT 163 (443)
T ss_dssp ---ETTEE-TT-----SS-EEEEE------SSSEEEEETTEEEEE-TTT--EEEEESS-E-EEEEE----TTSSEEEEE-
T ss_pred ---EcCccccceEEcCCcccceEEc-----CcEEEEECCCCEEEEEhhHcceeeEEecCCCcEEEE---ECCCCEEEEEe
Confidence 1222211111345656777776 445555555 599999875 34555554111223 22445555555
Q ss_pred CCcCeEEEEEEec
Q 001387 273 HAGLLHLLVITHE 285 (1088)
Q Consensus 273 ~~G~l~~l~l~~~ 285 (1088)
+ -.+|.+..+.+
T Consensus 164 ~-~~i~il~~~~~ 175 (443)
T PF04053_consen 164 K-DSIYILKYNLE 175 (443)
T ss_dssp S--SEEEEEE-HH
T ss_pred C-CeEEEEEecch
Confidence 4 36777777654
No 224
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=34.62 E-value=4.5e+02 Score=29.01 Aligned_cols=252 Identities=18% Similarity=0.294 Sum_probs=117.5
Q ss_pred EEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecCcc
Q 001387 549 IAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQ 628 (1088)
Q Consensus 549 ~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~ 628 (1088)
.++-|.- |++|.||+..+++.... |.. -.-|++..+...+ .++-|..|..+.++.+.. |+.- + .-++-.
T Consensus 209 kiVSGlr-DnTikiWD~n~~~c~~~--L~G--HtGSVLCLqyd~r-viisGSSDsTvrvWDv~t--ge~l--~-tlihHc 277 (499)
T KOG0281|consen 209 KIVSGLR-DNTIKIWDKNSLECLKI--LTG--HTGSVLCLQYDER-VIVSGSSDSTVRVWDVNT--GEPL--N-TLIHHC 277 (499)
T ss_pred hhhcccc-cCceEEeccccHHHHHh--hhc--CCCcEEeeeccce-EEEecCCCceEEEEeccC--Cchh--h-HHhhhc
Confidence 4444555 99999999887655321 211 1125554554433 566699999998887764 3211 1 112322
Q ss_pred ceeEE-EEEeCCceEEEEecCCceEE-EecCCcEEEeeccccc--ceeeeccCCCCCCCeE-EEEe-CCeEEEEEEcCCC
Q 001387 629 PITLR-TFSSKNTTHVFAASDRPTVI-YSSNKKLLYSNVNLKE--VSHMCPFNSAAFPDSL-AIAK-EGELTIGTIDDIQ 702 (1088)
Q Consensus 629 pv~l~-~~~~~~~~~v~~~~~~p~~i-~~~~~~~~~~~l~~~~--i~~~~~f~~~~~~~~l-~~~~-~~~l~i~~l~~~~ 702 (1088)
...|. .| .++.+++|++-.-+ .++-... +.+.... +-.-+..+...+.+-+ +-++ +..++.=.+.+..
T Consensus 278 eaVLhlrf----~ng~mvtcSkDrsiaVWdm~sp--s~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~e 351 (499)
T KOG0281|consen 278 EAVLHLRF----SNGYMVTCSKDRSIAVWDMASP--TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCE 351 (499)
T ss_pred ceeEEEEE----eCCEEEEecCCceeEEEeccCc--hHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEecccee
Confidence 11121 22 13455555432211 1110000 0000000 0112233333443433 3344 3344443333221
Q ss_pred CeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCce
Q 001387 703 KLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 782 (1088)
Q Consensus 703 ~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~ 782 (1088)
.+|.+ .+--|-|+-.....-++|..+.. -+|++.|...+..+- .++-+|.. +..+.|. .+
T Consensus 352 --fvRtl--~gHkRGIAClQYr~rlvVSGSSD---------ntIRlwdi~~G~cLR--vLeGHEeL--vRciRFd---~k 411 (499)
T KOG0281|consen 352 --FVRTL--NGHKRGIACLQYRDRLVVSGSSD---------NTIRLWDIECGACLR--VLEGHEEL--VRCIRFD---NK 411 (499)
T ss_pred --eehhh--hcccccceehhccCeEEEecCCC---------ceEEEEeccccHHHH--HHhchHHh--hhheeec---Cc
Confidence 22222 23334456555666677765432 478888887765442 23344442 2233454 34
Q ss_pred EEEEEeeeeCCCCCCCcceEEEEEEEeC--------CeEEEEEEEEecCceeEeccccCe-EEEEE-CCEEEEEEe
Q 001387 783 YYCVGTAYVLPEENEPTKGRILVFIVED--------GKLQLIAEKETKGAVYSLNAFNGK-LLAAI-NQKIQLYKW 848 (1088)
Q Consensus 783 ~i~VGT~~~~~~e~~~~~Gri~v~~i~~--------~kl~~~~~~~~~g~v~ai~~~~g~-Lv~~~-g~~l~v~~~ 848 (1088)
-|+-|. .-|.|.+|++.- +.+-+.+--+..|.|..+. |+.+ |+++. ..+|-++++
T Consensus 412 rIVSGa----------YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQ-FD~fqIvsssHddtILiWdF 476 (499)
T KOG0281|consen 412 RIVSGA----------YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQ-FDEFQIISSSHDDTILIWDF 476 (499)
T ss_pred eeeecc----------ccceEEEEecccccCCcccccchHHHhhhhccceeEEEe-ecceEEEeccCCCeEEEEEc
Confidence 455443 458899998761 1334444445666666665 4443 33332 245555554
No 225
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=34.53 E-value=3.2e+02 Score=32.58 Aligned_cols=189 Identities=23% Similarity=0.249 Sum_probs=96.1
Q ss_pred CcccEEEEc-CCEEEEEEeCCCCeEEEEEEE---eeeeEeEEeeeccCCCCccEEEEEeCcCeEEEEEEeCCCCcEEE-E
Q 001387 28 QELNLIIAK-CTRIEIHLLTPQGLQPMLDVP---IYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELIT-R 102 (1088)
Q Consensus 28 ~~~~Lvv~k-~~~le~y~~~~~~L~~~~~~~---l~~~i~~i~~~r~~~~~~d~L~v~~~~~~~~il~~~~~~~~~~t-~ 102 (1088)
+.+.|.||. ...|.+|++..++|.-..-.| +-+--..|..+|.-...-|.|++.. +.+.|--||-.+..... +
T Consensus 639 D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as--yd~Ti~lWDl~~~~~~~~l 716 (1012)
T KOG1445|consen 639 DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVAS--YDSTIELWDLANAKLYSRL 716 (1012)
T ss_pred ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhh--ccceeeeeehhhhhhhhee
Confidence 467898986 459999999988765332211 1122223444454334457666655 44555556654332221 1
Q ss_pred EeeeccCCCCccCCCCCeEEECCCCCEEEEEecCCeEEEEeCCCC-CccccceecccCCceeEEEEeecCCCCcEEEEEE
Q 001387 103 AMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNK-GQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181 (1088)
Q Consensus 103 s~~~~~~~~~r~~~~~~~l~vdp~~r~~~~~~~~~~l~i~p~~~~-~~~~~~~~i~l~~~~i~d~~fl~~~~~p~laiL~ 181 (1088)
+. ..+...-++=.|.||.+|--+.+|.+.|+.-.+. ..+.+-- =+.. ..=--+.|. .+.-.+.+.-
T Consensus 717 ~g---------HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~-gpvg-tRgARi~wa--cdgr~viv~G 783 (1012)
T KOG1445|consen 717 VG---------HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGK-GPVG-TRGARILWA--CDGRIVIVVG 783 (1012)
T ss_pred cc---------CcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCC-CCcc-CcceeEEEE--ecCcEEEEec
Confidence 11 1223345678999999999999999999854332 2111100 0011 011111221 0223444444
Q ss_pred EecCCcceEEEEEEeccCCCeeeecccccccCCCCCEEEecCCCCCceEEEeCC
Q 001387 182 QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEE 235 (1088)
Q Consensus 182 ~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~lp~~~~~liplp~~~~G~lv~~~~ 235 (1088)
-|....|++..|+-..-+ + +......|+-.++-|+|--.+-.++|.++..
T Consensus 784 fdk~SeRQv~~Y~Aq~l~--~--~pl~t~~lDvaps~LvP~YD~Ds~~lfltGK 833 (1012)
T KOG1445|consen 784 FDKSSERQVQMYDAQTLD--L--RPLYTQVLDVAPSPLVPHYDYDSNVLFLTGK 833 (1012)
T ss_pred ccccchhhhhhhhhhhcc--C--CcceeeeecccCccccccccCCCceEEEecC
Confidence 445555667766432111 1 1122234566666777765555566655443
No 226
>KOG3679 consensus Predicted coiled-coil protein [General function prediction only]
Probab=33.76 E-value=1.6e+02 Score=32.26 Aligned_cols=75 Identities=17% Similarity=0.240 Sum_probs=49.3
Q ss_pred eecCccceeE--EEEEeCCceEEEEecCCceEEEecCCcEEEeecccccceeeeccCCCC--CCCeEEEEeCCeEEEEEE
Q 001387 623 VSLGTQPITL--RTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAA--FPDSLAIAKEGELTIGTI 698 (1088)
Q Consensus 623 ~~lG~~pv~l--~~~~~~~~~~v~~~~~~p~~i~~~~~~~~~~~l~~~~i~~~~~f~~~~--~~~~l~~~~~~~l~i~~l 698 (1088)
..+|.+...+ ..| ....+.||+.|+|-++...+++.++|..--...-+++.|+++.. .-+.++--.++.|.|.+=
T Consensus 194 lnigeqaldicivsf-nqsassvfvlgernffclkdngqirfmkrldwspscflpycsvsegtintlignhnnmlhiyqd 272 (802)
T KOG3679|consen 194 LNIGEQALDICIVSF-NQSASSVFVLGERNFFCLKDNGQIRFMKRLDWSPSCFLPYCSVSEGTINTLIGNHNNMLHIYQD 272 (802)
T ss_pred eccChhhheEEEEEe-ccccceEEEEeccceEEEccCCEEEEeeccCCCcccccccccccccchhhhhcCCCceEEeeee
Confidence 3466655433 334 23457899999999999999998887654434456777776533 223455566777877763
No 227
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=33.48 E-value=6.2e+02 Score=27.03 Aligned_cols=190 Identities=20% Similarity=0.275 Sum_probs=83.2
Q ss_pred cCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEE
Q 001387 527 QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLL 606 (1088)
Q Consensus 527 ~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~ 606 (1088)
.+..++|.|+..+- .....+|. -..+.|..+++. -+++..-++....-++.|.++ ++..+++..=++|.|+
T Consensus 19 g~~~e~SGLTy~pd-----~~tLfaV~-d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~--g~~~~vl~~Er~~~L~ 89 (248)
T PF06977_consen 19 GILDELSGLTYNPD-----TGTLFAVQ-DEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYL--GNGRYVLSEERDQRLY 89 (248)
T ss_dssp T--S-EEEEEEETT-----TTEEEEEE-TTTTEEEEEETT---EEEEEE-SS-SSEEEEEE---STTEEEEEETTTTEEE
T ss_pred CccCCccccEEcCC-----CCeEEEEE-CCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEE--CCCEEEEEEcCCCcEE
Confidence 44567999998651 13344443 446777777764 345444445433456777654 5556666665799999
Q ss_pred EEEEecCCCccccc--eeeecCcccee---E--EEEEeCCceEEEEe-cCCceEEEecCC-----cEEEee---cc----
Q 001387 607 NFLLNMKTGELTDR--KKVSLGTQPIT---L--RTFSSKNTTHVFAA-SDRPTVIYSSNK-----KLLYSN---VN---- 666 (1088)
Q Consensus 607 ~y~~~~~~~~l~~~--~~~~lG~~pv~---l--~~~~~~~~~~v~~~-~~~p~~i~~~~~-----~~~~~~---l~---- 666 (1088)
.++++..+..+... +...+|..... + ...+ ...+..|+. -..|..++.-++ .+.... +.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D-~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYD-PKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL 168 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EEEEEE-TTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEEEEEc-CCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccc
Confidence 99997654433222 22333322100 1 1111 122344444 445655554322 111110 00
Q ss_pred -cccceeeeccCCCCCCCeEEEEeCCeEEEEEEcCCCCeEEEEEeCCC----------ccCeEEEecCCCEEEEE
Q 001387 667 -LKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE----------HPRRICHQEQSRTFAIC 730 (1088)
Q Consensus 667 -~~~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~~~~~~i~l~~----------tp~~i~y~~~~~~~~v~ 730 (1088)
...+++++ |+ + -.+.+++.++.+=++..++.. .-+.+.++|.. .|.-|++.++.++|+|.
T Consensus 169 ~~~d~S~l~-~~-p-~t~~lliLS~es~~l~~~d~~-G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 169 FVRDLSGLS-YD-P-RTGHLLILSDESRLLLELDRQ-GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp -SS---EEE-EE-T-TTTEEEEEETTTTEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred eeccccceE-Ec-C-CCCeEEEEECCCCeEEEECCC-CCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 01111111 22 1 123455555444455666633 33556666654 68889999999888876
No 228
>PHA02790 Kelch-like protein; Provisional
Probab=32.73 E-value=6.4e+02 Score=29.97 Aligned_cols=137 Identities=13% Similarity=0.063 Sum_probs=67.5
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccccCeEEEEECC----EEEEEEeeeccCccc
Q 001387 781 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQ----KIQLYKWMLRDDGTR 856 (1088)
Q Consensus 781 ~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~g~Lv~~~g~----~l~v~~~~~~~~~~~ 856 (1088)
...+++|.... ... .-.+..|+...++...+.....+-.-.+.+.++|+|++.-|. .+..|+ ... +
T Consensus 272 ~~lyviGG~~~----~~~-~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~yd--p~~-n-- 341 (480)
T PHA02790 272 EVVYLIGGWMN----NEI-HNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWF--HGD-A-- 341 (480)
T ss_pred CEEEEEcCCCC----CCc-CCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEE--CCC-C--
Confidence 46677775321 111 123555666555655554433222223445567887766552 333333 222 1
Q ss_pred ccccccccccceEEEEEEEeCCEEEE-Eecccc-EEEEEEeccCCeEEEEeccCCCceeEEEEEeeCceEEEE
Q 001387 857 ELQSECGHHGHILALYVQTRGDFIVV-GDLMKS-ISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGA 927 (1088)
Q Consensus 857 ~L~~~~~~~~~~~~~~l~~~~~~I~v-gD~~~S-v~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l~~ 927 (1088)
++...+.+...-......+.+++|+| |-...+ -.+-.|+++.++-..++.-+.++.-.++..+++.-++.+
T Consensus 342 ~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G 414 (480)
T PHA02790 342 AWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG 414 (480)
T ss_pred eEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC
Confidence 23333332222222334567787765 332211 234568888888777776666666555545554444433
No 229
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=32.66 E-value=5.5e+02 Score=26.13 Aligned_cols=131 Identities=15% Similarity=0.199 Sum_probs=64.1
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEeC--CeEEEEEEEEecCceeEec--cccCeEEEEEC---CEEEEEEeeeccC
Q 001387 781 NVYYCVGTAYVLPEENEPTKGRILVFIVED--GKLQLIAEKETKGAVYSLN--AFNGKLLAAIN---QKIQLYKWMLRDD 853 (1088)
Q Consensus 781 ~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~--~kl~~~~~~~~~g~v~ai~--~~~g~Lv~~~g---~~l~v~~~~~~~~ 853 (1088)
..+++|=+...........-|..-+|.+.. ...+.+ +.+-+|+|.+++ +-+.++++..| +++.+|+.+
T Consensus 17 G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i-~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~---- 91 (194)
T PF08662_consen 17 GDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESI-ELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK---- 91 (194)
T ss_pred CCEEEEEEEEeeccCcceEEeeEEEEEEecCCCcccee-eccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc----
Confidence 456666555221111223446666776652 222222 233467888886 22456766655 468888853
Q ss_pred cccccccccccccceEEEEEEEeCCEEEEEecccc---EEEEEEeccCCeEEEEeccCCCceeEEEEEeeCceE
Q 001387 854 GTRELQSECGHHGHILALYVQTRGDFIVVGDLMKS---ISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIY 924 (1088)
Q Consensus 854 ~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~S---v~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~ 924 (1088)
+ +.+... .......+.-+..|+++++|..-.. +.+ |+.++ ...++....+ .++.++.-.++.+
T Consensus 92 ~-~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~--wd~~~--~~~i~~~~~~-~~t~~~WsPdGr~ 157 (194)
T PF08662_consen 92 G-KKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEF--WDVRK--KKKISTFEHS-DATDVEWSPDGRY 157 (194)
T ss_pred c-cEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEE--EECCC--CEEeeccccC-cEEEEEEcCCCCE
Confidence 1 111111 1112223444456889988765432 555 45443 3334443333 2455555555543
No 230
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=31.98 E-value=2.2e+02 Score=34.51 Aligned_cols=109 Identities=12% Similarity=0.109 Sum_probs=63.0
Q ss_pred eccccCeEEEEEC-CEEEEEEeeeccCccccccccccc-ccceEEEEEEEeCCEEEEEeccccEEEEEEecc-CCeEEEE
Q 001387 828 LNAFNGKLLAAIN-QKIQLYKWMLRDDGTRELQSECGH-HGHILALYVQTRGDFIVVGDLMKSISLLIYKHE-EGAIEER 904 (1088)
Q Consensus 828 i~~~~g~Lv~~~g-~~l~v~~~~~~~~~~~~L~~~~~~-~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~-~~~l~~~ 904 (1088)
+..-..+|.+|.. +.||+|.- .+.+-+....+. .....+.+++..+.++.+|...-=|.++..+.. +..+..+
T Consensus 41 ~dst~~~l~~GsS~G~lyl~~R----~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~ 116 (726)
T KOG3621|consen 41 VDATEEYLAMGSSAGSVYLYNR----HTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYV 116 (726)
T ss_pred eecCCceEEEecccceEEEEec----CchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceee
Confidence 3333456665554 45677762 121111112222 223345556666677777887777777766553 3444444
Q ss_pred ec-c-CCCceeEEEEEeeCc-eEEEEccCCcEEEEeeCC
Q 001387 905 AR-D-YNANWMSAVEILDDD-IYLGAENNFNLFTVRKNS 940 (1088)
Q Consensus 905 ~~-D-~~~~~v~~~~~l~~~-~~l~~D~~gnl~~l~~~~ 940 (1088)
.. | .+++.|||++---+. .+..+|..|.++.-+.+.
T Consensus 117 t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 117 TPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 42 3 247888887654333 588999999999887765
No 231
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=31.95 E-value=1e+02 Score=23.30 Aligned_cols=40 Identities=15% Similarity=0.302 Sum_probs=30.0
Q ss_pred eEEEEEEEeeeeEeEEeeeccCCCCccEEEEEeCcCeEEEEEEe
Q 001387 50 LQPMLDVPIYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWD 93 (1088)
Q Consensus 50 L~~~~~~~l~~~i~~i~~~r~~~~~~d~L~v~~~~~~~~il~~~ 93 (1088)
++.+.+..+...|..+.- -| ..|.|.+.+++|++.+-+.+
T Consensus 2 f~~~~~k~l~~~v~~~~w-~P---~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 2 FRQLGEKNLPSRVSCMSW-CP---TMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred cceecccCCCCcEEEEEE-CC---CCCEEEEEECCCeEEEEECC
Confidence 456677777777775443 22 46999999999999998885
No 232
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=31.39 E-value=1.3e+02 Score=32.06 Aligned_cols=60 Identities=20% Similarity=0.334 Sum_probs=33.7
Q ss_pred CCEEEEEcCCcCeEEEEEEecCcEEeeEEEEEc-----CccccceEEEEecCCeEEEeeecCCeEEEEE
Q 001387 265 GSRYLLGDHAGLLHLLVITHEKEKVTGLKIELL-----GETSIASTISYLDNAVVYIGSSYGDSQLIKL 328 (1088)
Q Consensus 265 ~~~~ll~~~~G~l~~l~l~~~~~~v~~~~i~~~-----~~~~~~s~l~~l~~~~lf~gS~~gds~l~~~ 328 (1088)
++.++|++++..| +.++.+|+.++.+.+..- ...+.|.-++.-.+|.||+.|+ ...+|++
T Consensus 183 ~~lliLS~es~~l--~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE--pNlfy~f 247 (248)
T PF06977_consen 183 GHLLILSDESRLL--LELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE--PNLFYRF 247 (248)
T ss_dssp TEEEEEETTTTEE--EEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET--TTEEEEE
T ss_pred CeEEEEECCCCeE--EEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC--CceEEEe
Confidence 4455666666666 455566765555655431 1246788999999999999998 5577766
No 233
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=30.70 E-value=1.8e+02 Score=20.51 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=21.9
Q ss_pred CCeEEEEEEcCCCCeEEEEEeCCCccCeEEEe
Q 001387 690 EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQ 721 (1088)
Q Consensus 690 ~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~ 721 (1088)
.+.+.+ ++....-..+++++++.|+.++++
T Consensus 13 ~~~v~~--id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 13 SNTVSV--IDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCEEEE--EECCCCeEEEEEECCCCCceEEeC
Confidence 345544 555556788899999999998863
No 234
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=30.19 E-value=5.8e+02 Score=31.28 Aligned_cols=107 Identities=16% Similarity=0.139 Sum_probs=57.4
Q ss_pred CCCEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEEC---------CC
Q 001387 497 NASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL---------PD 567 (1088)
Q Consensus 497 ~~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l---------~~ 567 (1088)
.+...+|-.++.++...+...+.++.-+.++-...|-.+|....++ .+..++||+- +.+.+|.- |.
T Consensus 40 ~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d---~qsiLaVGf~--~~v~l~~Q~R~dy~~~~p~ 114 (631)
T PF12234_consen 40 IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPD---GQSILAVGFP--HHVLLYTQLRYDYTNKGPS 114 (631)
T ss_pred cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCC---CCEEEEEEcC--cEEEEEEccchhhhcCCcc
Confidence 3455555545556666555555554444455567788888765554 3678889865 67888762 11
Q ss_pred CCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEE
Q 001387 568 LNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFL 609 (1088)
Q Consensus 568 l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~ 609 (1088)
...+..-.+. +..|+.|-=....+.-+|+||++|...+..+
T Consensus 115 w~~i~~i~i~-~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 115 WAPIRKIDIS-SHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK 155 (631)
T ss_pred cceeEEEEee-cCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence 1222111121 1233322101122456789999887655433
No 235
>KOG4328 consensus WD40 protein [Function unknown]
Probab=29.58 E-value=9.3e+02 Score=27.83 Aligned_cols=286 Identities=16% Similarity=0.149 Sum_probs=0.0
Q ss_pred CceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEEC----CCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCc
Q 001387 529 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL----PDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGH 604 (1088)
Q Consensus 529 ~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l----~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~ 604 (1088)
...|+|+++.|..+ ...+++|-- .|.|-+|++ ++..-+....-. ..|-+-+...-.+...++...-||.
T Consensus 186 ~~Rit~l~fHPt~~----~~lva~GdK-~G~VG~Wn~~~~~~d~d~v~~f~~h--s~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 186 DRRITSLAFHPTEN----RKLVAVGDK-GGQVGLWNFGTQEKDKDGVYLFTPH--SGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred ccceEEEEecccCc----ceEEEEccC-CCcEEEEecCCCCCccCceEEeccC--CccccceEecCCChhheeeeccCce
Q ss_pred EEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEecC-----CceEEEecCCcEEEeecccccceeeeccCCC
Q 001387 605 LLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASD-----RPTVIYSSNKKLLYSNVNLKEVSHMCPFNSA 679 (1088)
Q Consensus 605 l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~-----~p~~i~~~~~~~~~~~l~~~~i~~~~~f~~~ 679 (1088)
+-.-.+.... +.-...+-+.-.-+..++....+....+++ ..|-.-..+..+.-.-++.+.|.+++ .++
T Consensus 259 iR~~D~~~~i----~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~--~NP 332 (498)
T KOG4328|consen 259 IRLQDFEGNI----SEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVA--LNP 332 (498)
T ss_pred eeeeeecchh----hHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceee--cCC
Q ss_pred CCCCeEEEEe-CCeEEEEEEcCCCCeE---EEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeC----
Q 001387 680 AFPDSLAIAK-EGELTIGTIDDIQKLH---IRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDD---- 751 (1088)
Q Consensus 680 ~~~~~l~~~~-~~~l~i~~l~~~~~~~---~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~---- 751 (1088)
.+|..++-+. ++.++|-.+-..++=. ...++=...+....|+|....++.-|.++ .|+++|.
T Consensus 333 ~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~----------~IRv~dss~~s 402 (498)
T KOG4328|consen 333 VCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDN----------EIRVFDSSCIS 402 (498)
T ss_pred CCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCC----------ceEEeeccccc
Q ss_pred CCceEEEEEECCCCc-eEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCe--EEEEEEEE-ecCceeE
Q 001387 752 QTFEFISTYPLDTFE-YGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGK--LQLIAEKE-TKGAVYS 827 (1088)
Q Consensus 752 ~t~~~i~~~~~~~~E-~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~k--l~~~~~~~-~~g~v~a 827 (1088)
...+....+.-...- +.++.--....- ...+|+||- ..-+|=+|+-.+++ +++-.... .--+|.+
T Consensus 403 a~~~p~~~I~Hn~~t~RwlT~fKA~W~P-~~~li~vg~----------~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~ 471 (498)
T KOG4328|consen 403 AKDEPLGTIPHNNRTGRWLTPFKAAWDP-DYNLIVVGR----------YPRPIDVFDGNGGQMVCELHDPESSTIPSVNE 471 (498)
T ss_pred ccCCccceeeccCcccccccchhheeCC-CccEEEEec----------cCcceeEEcCCCCEEeeeccCcccccccccee
Q ss_pred eccccCeEEEEECCEEEEEEe
Q 001387 828 LNAFNGKLLAAINQKIQLYKW 848 (1088)
Q Consensus 828 i~~~~g~Lv~~~g~~l~v~~~ 848 (1088)
+.+.++-+++|.+..-.+|-|
T Consensus 472 ~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 472 FHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred ecccccceeccCCccceEEEE
No 236
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=29.34 E-value=1.4e+02 Score=30.83 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=42.8
Q ss_pred ccE-EEEcCCEEEEEEeCCCCeEEEEEEEeeeeEeEEeeeccCCCCccEEEEEeCcCeEE
Q 001387 30 LNL-IIAKCTRIEIHLLTPQGLQPMLDVPIYGRIATLELFRPHGEAQDFLFIATERYKFC 88 (1088)
Q Consensus 30 ~~L-vv~k~~~le~y~~~~~~L~~~~~~~l~~~i~~i~~~r~~~~~~d~L~v~~~~~~~~ 88 (1088)
.-| |++.+..+|+|.+..++-.+++.|+.-|.|..|.--+. .|+|+-+=++.+-.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~----GDYlvTlE~k~~~~ 84 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEA----GDYLVTLEEKNKRS 84 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccc----cceEEEEEeecCCc
Confidence 344 55789999999999889999999999899998875442 48887776655543
No 237
>PHA02790 Kelch-like protein; Provisional
Probab=29.24 E-value=1e+03 Score=28.23 Aligned_cols=129 Identities=10% Similarity=0.031 Sum_probs=65.4
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccccCeEEEEEC-----CEEEEEEeeeccCcc
Q 001387 781 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAIN-----QKIQLYKWMLRDDGT 855 (1088)
Q Consensus 781 ~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~g~Lv~~~g-----~~l~v~~~~~~~~~~ 855 (1088)
...+++|.... . ..+..|+...++.+.+......=.-.+.+.++|+|++.-| +.+..|+ .++ ..
T Consensus 319 ~~iYviGG~~~------~--~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~yd--p~~-~~ 387 (480)
T PHA02790 319 NKLYVVGGLPN------P--TSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLL--PNH-DQ 387 (480)
T ss_pred CEEEEECCcCC------C--CceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEe--CCC-CE
Confidence 56777775311 1 2345555545556554433221112244556777776555 2344444 222 22
Q ss_pred cccccccccccceEEEEEEEeCCEEEE-EeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCceEEEE
Q 001387 856 RELQSECGHHGHILALYVQTRGDFIVV-GDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGA 927 (1088)
Q Consensus 856 ~~L~~~~~~~~~~~~~~l~~~~~~I~v-gD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l~~ 927 (1088)
+.. .+....+-.-.++.+.++.|+| |- . .-.|+++.++=..++.=+.+|.-.++..+++.-++++
T Consensus 388 W~~--~~~m~~~r~~~~~~~~~~~IYv~GG---~--~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviG 453 (480)
T PHA02790 388 WQF--GPSTYYPHYKSCALVFGRRLFLVGR---N--AEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIG 453 (480)
T ss_pred EEe--CCCCCCccccceEEEECCEEEEECC---c--eEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEEC
Confidence 332 2222222222344567887766 42 1 2457888788877776566676666666666544433
No 238
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=28.95 E-value=5.1e+02 Score=31.43 Aligned_cols=114 Identities=15% Similarity=0.196 Sum_probs=62.3
Q ss_pred ecCceeEeccccC-eEEEEECCEEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEEEEeccccEEEEEEeccCC
Q 001387 821 TKGAVYSLNAFNG-KLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEG 899 (1088)
Q Consensus 821 ~~g~v~ai~~~~g-~Lv~~~g~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~ 899 (1088)
+...|.+++.+.+ .++.|.+.- .+..|+. +| ..|...-.+..++|.+++ ..++.++|..--++- +-.|+.+
T Consensus 178 HtD~VRgL~vl~~~~flScsNDg-~Ir~w~~--~g-e~l~~~~ghtn~vYsis~-~~~~~~Ivs~gEDrt-lriW~~~-- 249 (745)
T KOG0301|consen 178 HTDCVRGLAVLDDSHFLSCSNDG-SIRLWDL--DG-EVLLEMHGHTNFVYSISM-ALSDGLIVSTGEDRT-LRIWKKD-- 249 (745)
T ss_pred chhheeeeEEecCCCeEeecCCc-eEEEEec--cC-ceeeeeeccceEEEEEEe-cCCCCeEEEecCCce-EEEeecC--
Confidence 6778888998876 555554432 2334543 22 234333333334444442 345555565555553 1224433
Q ss_pred eEEEEeccCCCceeEEEEEeeCceEEEEccCCcEEEEeeCCCCC
Q 001387 900 AIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGA 943 (1088)
Q Consensus 900 ~l~~~~~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~~~~~ 943 (1088)
.+...-.-|. ..+-++.+|..+.++++-.+|-+++|...++..
T Consensus 250 e~~q~I~lPt-tsiWsa~~L~NgDIvvg~SDG~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 250 ECVQVITLPT-TSIWSAKVLLNGDIVVGGSDGRVRVFTVDKDRK 292 (745)
T ss_pred ceEEEEecCc-cceEEEEEeeCCCEEEeccCceEEEEEeccccc
Confidence 1111111121 134468889888888888999999999876543
No 239
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=28.66 E-value=56 Score=23.98 Aligned_cols=39 Identities=18% Similarity=0.379 Sum_probs=27.3
Q ss_pred EehHHHHHHhcCCHHHHHHHHHhcCCCHHHHHHHHHHHh
Q 001387 1047 LDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELT 1085 (1088)
Q Consensus 1047 iDGdll~~fl~l~~~~q~~i~~~~~~~~~~i~~~l~~l~ 1085 (1088)
+|-.+|..+..=+..--.+||+.+|+|...+.+-+..|+
T Consensus 4 ~D~~Il~~Lq~d~r~s~~~la~~lglS~~~v~~Ri~rL~ 42 (42)
T PF13404_consen 4 LDRKILRLLQEDGRRSYAELAEELGLSESTVRRRIRRLE 42 (42)
T ss_dssp HHHHHHHHHHH-TTS-HHHHHHHHTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHCcCHHHHHHHHHHhC
Confidence 355566665555666678999999999999998887764
No 240
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=28.04 E-value=8e+02 Score=30.25 Aligned_cols=112 Identities=20% Similarity=0.219 Sum_probs=69.7
Q ss_pred EecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCc
Q 001387 720 HQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPT 799 (1088)
Q Consensus 720 y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~ 799 (1088)
..|.++.+-++-++- .-+-.++.| |=+.+.+|.+++-..|.||..+.... +.+++++|..-. .
T Consensus 35 ~s~~sn~IdiGIS~S--------~ISsYIi~P-TPKLiwsypi~pt~iV~~~dV~~~~~-~~~~~~~glt~r-------K 97 (670)
T PF10395_consen 35 FSPDSNQIDIGISGS--------AISSYIIKP-TPKLIWSYPISPTTIVECCDVLEKSD-GKKLYCVGLTER-------K 97 (670)
T ss_pred cCCCCceEEEEeccc--------hhhheecCC-CcceeEeeccCcCceEEEEEeEecCC-CcEEEEEEEeeC-------C
Confidence 345666666655432 011134566 55788999999999999999987664 578999997532 2
Q ss_pred ceEEEEEEEe---------CCeEEEEEEEEecCceeEeccc-cCe-E-EEEECCEEEEEEe
Q 001387 800 KGRILVFIVE---------DGKLQLIAEKETKGAVYSLNAF-NGK-L-LAAINQKIQLYKW 848 (1088)
Q Consensus 800 ~Gri~v~~i~---------~~kl~~~~~~~~~g~v~ai~~~-~g~-L-v~~~g~~l~v~~~ 848 (1088)
+-++...+.. +..-.-..+...++.|-+|.-. ++. + ++-.++.+.+|++
T Consensus 98 k~~ll~i~~~~~~~~~~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~ 158 (670)
T PF10395_consen 98 KFKLLLIERKVGSTEDGTVNSETTNEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDF 158 (670)
T ss_pred eeEEEEEEccCccccccccCccccceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEec
Confidence 3355555444 1112223344578888888877 443 3 3445567888887
No 241
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=27.84 E-value=5.1e+02 Score=31.05 Aligned_cols=66 Identities=18% Similarity=0.357 Sum_probs=43.1
Q ss_pred CCEEEEEECCCeEEEEEEcCcEEEEEee-----cc-CCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCC
Q 001387 498 ASQVLLATGGGHLVYLEIGDGILTEVKH-----AQ-LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLN 569 (1088)
Q Consensus 498 ~~~lvv~~~~~~l~~~~~~~~~l~~~~~-----~~-l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~ 569 (1088)
+..+.|+.+++.+-+-++..+.+.+... .+ -...|+.|.+.|+. ++.++++.+ |.+|++|++.+..
T Consensus 640 ~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLA-----advLa~asy-d~Ti~lWDl~~~~ 711 (1012)
T KOG1445|consen 640 DERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLA-----ADVLAVASY-DSTIELWDLANAK 711 (1012)
T ss_pred hHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchh-----hhHhhhhhc-cceeeeeehhhhh
Confidence 4567777778877666665433333211 11 13457788887653 678899988 9999999987543
No 242
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=27.81 E-value=8.6e+02 Score=26.88 Aligned_cols=216 Identities=13% Similarity=0.098 Sum_probs=107.4
Q ss_pred CeEEEEeCCeEEEEEEcCCC-CeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEE-
Q 001387 683 DSLAIAKEGELTIGTIDDIQ-KLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTY- 760 (1088)
Q Consensus 683 ~~l~~~~~~~l~i~~l~~~~-~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~- 760 (1088)
+-++.+.+-.=.|--++... .+.-+-+.-|....-|-++|...-+++.+++. .+||+.+-.+...+.-+
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD---------~svRlwnI~~~~Cv~VfG 175 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKD---------HSVRLWNIQTDVCVAVFG 175 (385)
T ss_pred CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCC---------ceEEEEeccCCeEEEEec
Confidence 44555544222223333332 34444455677777888899888888888765 57899888887766543
Q ss_pred --ECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEe----CCeEEEE------------------
Q 001387 761 --PLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE----DGKLQLI------------------ 816 (1088)
Q Consensus 761 --~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~----~~kl~~~------------------ 816 (1088)
+=-.+ +++|+. +.-++ .+|+- ++.. =.|.+|++. ..+|+..
T Consensus 176 G~egHrd-eVLSvD---~~~~g-d~i~S-cGmD---------hslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~ 240 (385)
T KOG1034|consen 176 GVEGHRD-EVLSVD---FSLDG-DRIAS-CGMD---------HSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTH 240 (385)
T ss_pred ccccccC-cEEEEE---EcCCC-Ceeec-cCCc---------ceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccc
Confidence 22222 344443 22222 24432 2221 257777776 1223222
Q ss_pred -----EEEEecCceeEeccccCeEEE-EECCEEEEEEe-eeccCccccccc-c-c-----ccccce----E-EEEEEEeC
Q 001387 817 -----AEKETKGAVYSLNAFNGKLLA-AINQKIQLYKW-MLRDDGTRELQS-E-C-----GHHGHI----L-ALYVQTRG 877 (1088)
Q Consensus 817 -----~~~~~~g~v~ai~~~~g~Lv~-~~g~~l~v~~~-~~~~~~~~~L~~-~-~-----~~~~~~----~-~~~l~~~~ 877 (1088)
....++.+|-|+.-+.++++. ++++.|..++. +..+.- .+..+ . + .++-+. + --+.....
T Consensus 241 fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~-~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~ 319 (385)
T KOG1034|consen 241 FPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESI-HNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ 319 (385)
T ss_pred cccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhh-hccCCCccceeeeeEeccCccceEEEEEeecHHH
Confidence 112346677777777777774 67787777654 111110 01111 1 1 011111 0 01223345
Q ss_pred CEEEEEeccccEEEEEEecc-CCeEEEEeccCCCceeEEEEEeeCce
Q 001387 878 DFIVVGDLMKSISLLIYKHE-EGAIEERARDYNANWMSAVEILDDDI 923 (1088)
Q Consensus 878 ~~I~vgD~~~Sv~~~~~~~~-~~~l~~~~~D~~~~~v~~~~~l~~~~ 923 (1088)
..+++|-....+.++..+.. +.+..-+......+-|....|-.++.
T Consensus 320 ~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs 366 (385)
T KOG1034|consen 320 KMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS 366 (385)
T ss_pred HHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc
Confidence 67777888888777665543 22333333333333333344444444
No 243
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.64 E-value=3.6e+02 Score=28.38 Aligned_cols=105 Identities=15% Similarity=0.239 Sum_probs=59.2
Q ss_pred ccCeEEE-EECCEEEEEEeeeccCcccccccccccccceEE-EEEEE----eCCEEEEEeccccEEEEEEeccCCeEEEE
Q 001387 831 FNGKLLA-AINQKIQLYKWMLRDDGTRELQSECGHHGHILA-LYVQT----RGDFIVVGDLMKSISLLIYKHEEGAIEER 904 (1088)
Q Consensus 831 ~~g~Lv~-~~g~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~-~~l~~----~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~ 904 (1088)
++.+|+- +....|++|.. +.+++.++ .+.+.++.-| -.+.. +|+ |++.-.+++= ++-|++++++....
T Consensus 22 ygkrlATcsSD~tVkIf~v--~~n~~s~l--l~~L~Gh~GPVwqv~wahPk~G~-iLAScsYDgk-VIiWke~~g~w~k~ 95 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEV--RNNGQSKL--LAELTGHSGPVWKVAWAHPKFGT-ILASCSYDGK-VIIWKEENGRWTKA 95 (299)
T ss_pred hcceeeeecCCccEEEEEE--cCCCCcee--eeEecCCCCCeeEEeecccccCc-EeeEeecCce-EEEEecCCCchhhh
Confidence 3556663 44577888885 34454223 2333333322 22322 344 5666666664 34478777655443
Q ss_pred e-ccCCCceeEEEEEeeCc--e-EEEEccCCcEEEEeeCCC
Q 001387 905 A-RDYNANWMSAVEILDDD--I-YLGAENNFNLFTVRKNSE 941 (1088)
Q Consensus 905 ~-~D~~~~~v~~~~~l~~~--~-~l~~D~~gnl~~l~~~~~ 941 (1088)
. .-.+.-.|.++.+-..+ . ++++-.+|++.+|+++.+
T Consensus 96 ~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~ 136 (299)
T KOG1332|consen 96 YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS 136 (299)
T ss_pred hhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC
Confidence 3 12334456666665444 2 567888999999999876
No 244
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=27.27 E-value=9.4e+02 Score=28.44 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=39.7
Q ss_pred ccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCc-eEeEEEEEEEcCCCceEEEEEe
Q 001387 714 HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFE-YGCSILSCSFSDDSNVYYCVGT 788 (1088)
Q Consensus 714 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E-~v~si~~~~~~~~~~~~i~VGT 788 (1088)
.+..++++|+.+.+++++-+ .+||++|-.+++.++.. +.+- -.+|+ .|.- ...|||+|.
T Consensus 292 ~in~f~FS~DG~~LA~VSqD----------GfLRvF~fdt~eLlg~m--kSYFGGLLCv-cWSP---DGKyIvtGG 351 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQD----------GFLRIFDFDTQELLGVM--KSYFGGLLCV-CWSP---DGKYIVTGG 351 (636)
T ss_pred cccceeEcCCCceEEEEecC----------ceEEEeeccHHHHHHHH--HhhccceEEE-EEcC---CccEEEecC
Confidence 67788999999888877643 79999998887766422 1111 12444 3542 367999885
No 245
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=27.04 E-value=8.2e+02 Score=26.37 Aligned_cols=89 Identities=17% Similarity=0.143 Sum_probs=58.9
Q ss_pred eeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEe
Q 001387 742 EMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKET 821 (1088)
Q Consensus 742 ~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~ 821 (1088)
.+|+|+-+|+.|++++.+.+|++.-....+..+ ...|..=| -..|..++|+.. .++.+.+...
T Consensus 66 G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~------~d~l~qLT---------Wk~~~~f~yd~~--tl~~~~~~~y 128 (264)
T PF05096_consen 66 GQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL------GDKLYQLT---------WKEGTGFVYDPN--TLKKIGTFPY 128 (264)
T ss_dssp TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE------TTEEEEEE---------SSSSEEEEEETT--TTEEEEEEE-
T ss_pred CcEEEEEEECCCCcEEEEEECCccccceeEEEE------CCEEEEEE---------ecCCeEEEEccc--cceEEEEEec
Confidence 369999999999999999999998777777665 23344444 255677777653 4777777777
Q ss_pred cCceeEeccccCeEEEEEC-CEEEEEE
Q 001387 822 KGAVYSLNAFNGKLLAAIN-QKIQLYK 847 (1088)
Q Consensus 822 ~g~v~ai~~~~g~Lv~~~g-~~l~v~~ 847 (1088)
+|-==.+|.-+..|+.+-| ++|+.++
T Consensus 129 ~~EGWGLt~dg~~Li~SDGS~~L~~~d 155 (264)
T PF05096_consen 129 PGEGWGLTSDGKRLIMSDGSSRLYFLD 155 (264)
T ss_dssp SSS--EEEECSSCEEEE-SSSEEEEE-
T ss_pred CCcceEEEcCCCEEEEECCccceEEEC
Confidence 7766667766778999999 5666544
No 246
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.03 E-value=1.9e+02 Score=30.24 Aligned_cols=78 Identities=10% Similarity=0.142 Sum_probs=41.8
Q ss_pred ccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEe-cCCC---------CcCceeEEeeeecCceE
Q 001387 526 AQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKE-HLGG---------EIIPRSVLLCAFEGISY 595 (1088)
Q Consensus 526 ~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~-~l~~---------~~~p~si~~~~~~~~~~ 595 (1088)
..++..++.+... +.++++-+- +|.+++|+++..+.+... ++.. ......+.-+.+.+.-.
T Consensus 9 i~Lgs~~~~l~~~--------~~~Ll~iT~-~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~ 79 (219)
T PF07569_consen 9 IVLGSPVSFLECN--------GSYLLAITS-SGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV 79 (219)
T ss_pred EecCCceEEEEeC--------CCEEEEEeC-CCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC
Confidence 3455666666542 466666666 999999999876554321 1110 00111222222322333
Q ss_pred EEEEeCCCcEEEEEEec
Q 001387 596 LLCALGDGHLLNFLLNM 612 (1088)
Q Consensus 596 L~vgl~~G~l~~y~~~~ 612 (1088)
.+|.+.||..+.|..+.
T Consensus 80 PiV~lsng~~y~y~~~L 96 (219)
T PF07569_consen 80 PIVTLSNGDSYSYSPDL 96 (219)
T ss_pred EEEEEeCCCEEEecccc
Confidence 45667778777666553
No 247
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=26.52 E-value=1.2e+03 Score=28.24 Aligned_cols=155 Identities=19% Similarity=0.132 Sum_probs=83.5
Q ss_pred EecCceeEecc-cc-CeEEEEEC--CEEEEEEeeeccCccccccc------ccccc-cc-eEEEEEEEeCC--EEEEEec
Q 001387 820 ETKGAVYSLNA-FN-GKLLAAIN--QKIQLYKWMLRDDGTRELQS------ECGHH-GH-ILALYVQTRGD--FIVVGDL 885 (1088)
Q Consensus 820 ~~~g~v~ai~~-~~-g~Lv~~~g--~~l~v~~~~~~~~~~~~L~~------~~~~~-~~-~~~~~l~~~~~--~I~vgD~ 885 (1088)
+++.-|.|++. .+ ..++++.| .+|.+|+++ .+..+++. .+... ++ ..+.++....+ .|+-|+.
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin---~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt 191 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDIN---TGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT 191 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEcc---CcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc
Confidence 56677778877 33 45666544 788887764 22222221 11111 11 12334444433 7777888
Q ss_pred cccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCc-eEEEEccCCcEEEEeeCCCCCCcccccceeEEEEEEcCCccc
Q 001387 886 MKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDD-IYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVN 964 (1088)
Q Consensus 886 ~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~-~~l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~ 964 (1088)
.+-+.++.-+.....+.+.+ +.-.|.++-..+++ +++.+-.+|.|.+..... +|. .+.|++.+..
T Consensus 192 ek~lr~wDprt~~kimkLrG---HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq--------QrC--l~T~~vH~e~- 257 (735)
T KOG0308|consen 192 EKDLRLWDPRTCKKIMKLRG---HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ--------QRC--LATYIVHKEG- 257 (735)
T ss_pred ccceEEeccccccceeeeec---cccceEEEEEcCCCCeEeecCCCceEEeeeccc--------cce--eeeEEeccCc-
Confidence 88877643222233333332 33445555555665 588888999999988764 232 2335555433
Q ss_pred eEEeeeeeecCCCCCCCCccEEEEEcccccEEEEEec
Q 001387 965 RFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASL 1001 (1088)
Q Consensus 965 ~~~~~~l~~~~~~~~~~~~~~~l~~t~~G~i~~l~~l 1001 (1088)
.+++... ..-..+++|..+|-|+ .++|
T Consensus 258 ---VWaL~~~------~sf~~vYsG~rd~~i~-~Tdl 284 (735)
T KOG0308|consen 258 ---VWALQSS------PSFTHVYSGGRDGNIY-RTDL 284 (735)
T ss_pred ---eEEEeeC------CCcceEEecCCCCcEE-eccc
Confidence 1233210 1223566677888776 4555
No 248
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=26.51 E-value=76 Score=23.76 Aligned_cols=38 Identities=11% Similarity=0.284 Sum_probs=28.7
Q ss_pred hHHHHHHhcCCHHHHHHHHHhcCCCHHHHHHHHHHHhc
Q 001387 1049 GDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELTR 1086 (1088)
Q Consensus 1049 Gdll~~fl~l~~~~q~~i~~~~~~~~~~i~~~l~~l~~ 1086 (1088)
-.+|....+-+.-.+.+||+.+|.+...+.+.|.+|..
T Consensus 6 ~~Il~~l~~~~~~t~~ela~~~~is~~tv~~~l~~L~~ 43 (48)
T PF13412_consen 6 RKILNYLRENPRITQKELAEKLGISRSTVNRYLKKLEE 43 (48)
T ss_dssp HHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34566666677788999999999999999888887753
No 249
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.36 E-value=1.2e+03 Score=30.00 Aligned_cols=23 Identities=22% Similarity=0.327 Sum_probs=19.4
Q ss_pred cCCeEEEeeecCCeEEEEEeeCC
Q 001387 310 DNAVVYIGSSYGDSQLIKLNLQP 332 (1088)
Q Consensus 310 ~~~~lf~gS~~gds~l~~~~~~~ 332 (1088)
.++++|+|++.|+=.+|.+.++.
T Consensus 25 ~~~~l~vGt~~G~L~lY~i~~~~ 47 (877)
T KOG2063|consen 25 YGNHLYVGTRDGDLYLYSIYERG 47 (877)
T ss_pred hCCEEEEEcCCCcEEEEeccccc
Confidence 47799999999998888888653
No 250
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=25.57 E-value=1.9e+02 Score=19.12 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=18.4
Q ss_pred CCcEEEEEECCCEEEEEECCCeEEE
Q 001387 488 GYSVNVATANASQVLLATGGGHLVY 512 (1088)
Q Consensus 488 ~~~I~~a~~~~~~lvv~~~~~~l~~ 512 (1088)
|+.|.+.+..+.++.++.+.+-+..
T Consensus 1 gE~i~aia~g~~~vavaTS~~~lRi 25 (27)
T PF12341_consen 1 GEEIEAIAAGDSWVAVATSAGYLRI 25 (27)
T ss_pred CceEEEEEccCCEEEEEeCCCeEEe
Confidence 3568888888889988887665543
No 251
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=24.72 E-value=1.1e+03 Score=28.73 Aligned_cols=136 Identities=16% Similarity=0.166 Sum_probs=0.0
Q ss_pred cEEEEecCCcceeeeeeCCCCCcEEEEEEC--CCEEEEEECCCeEEEEEEcCcEEEEEe---eccCCceeEEEEeCCCCC
Q 001387 468 SVRLVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVK---HAQLEYEISCLDINPIGE 542 (1088)
Q Consensus 468 ~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~~~~~l~~~~~~~~~l~~~~---~~~l~~~is~l~~~~~~~ 542 (1088)
.|++.+-.+-...++... ..-.|+.-+.+ +.+++-+..+....+++..++...+.. ...-.--|-.-+..|
T Consensus 553 vI~lw~t~~W~~~~~L~~-HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p--- 628 (764)
T KOG1063|consen 553 VIRLWNTANWLQVQELEG-HSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP--- 628 (764)
T ss_pred EEEEEeccchhhhheecc-cceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCc---
Q ss_pred CCCCccEEEEEEecCCEEEEEECCCC--CceEE-ecCCCCcCceeEEeeee---cCceEEEEEeCCCcEEEEEEe
Q 001387 543 NPSYSQIAAVGMWTDISVRIFSLPDL--NLITK-EHLGGEIIPRSVLLCAF---EGISYLLCALGDGHLLNFLLN 611 (1088)
Q Consensus 543 ~~~~~~~~~vg~w~~~~i~i~~l~~l--~~~~~-~~l~~~~~p~si~~~~~---~~~~~L~vgl~~G~l~~y~~~ 611 (1088)
.+.+++-+.. |.++.+|..++. +.+.. ..+..+.....+.++.. +....+-+|+..|.++.|+..
T Consensus 629 ---de~~FaTaSR-DK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 629 ---DEKYFATASR-DKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred ---ccceeEEecC-CceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
No 252
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=24.62 E-value=8.9e+02 Score=25.96 Aligned_cols=156 Identities=13% Similarity=0.219 Sum_probs=84.0
Q ss_pred eEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC-e-E------EEEE-EEEecCceeEeccc---cCe
Q 001387 767 YGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG-K-L------QLIA-EKETKGAVYSLNAF---NGK 834 (1088)
Q Consensus 767 ~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~-k-l------~~~~-~~~~~g~v~ai~~~---~g~ 834 (1088)
.++|.. |.+..+...++++|- ..|.+.+|++..+ + + +.+. ...+++||.++..- +..
T Consensus 152 svmc~~-~~~~c~s~~lllaGy----------Esghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rG 220 (323)
T KOG0322|consen 152 SVMCQD-KDHACGSTFLLLAGY----------ESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRG 220 (323)
T ss_pred ceeeee-ccccccceEEEEEec----------cCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCC
Confidence 345554 555544556666663 3588999988732 1 2 2222 23578899988633 445
Q ss_pred EEEEECCEEEEEEeeeccCcccccccccccccc-eEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCcee
Q 001387 835 LLAAINQKIQLYKWMLRDDGTRELQSECGHHGH-ILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWM 913 (1088)
Q Consensus 835 Lv~~~g~~l~v~~~~~~~~~~~~L~~~~~~~~~-~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v 913 (1088)
+.=+.+.++..|.++.+ .++..+...-....+ ...+.|...+.....+-=-.-+-++.|+.- +-|-.+. ++.--|
T Consensus 221 isgga~dkl~~~Sl~~s-~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl-~pLAVLk--yHsagv 296 (323)
T KOG0322|consen 221 ISGGADDKLVMYSLNHS-TGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL-NPLAVLK--YHSAGV 296 (323)
T ss_pred cCCCccccceeeeeccc-cCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC-Cchhhhh--hhhcce
Confidence 77778888888887532 243333222111111 223455544443333444445667777642 2333333 233445
Q ss_pred EEEEEeeC-ceEEEEccCCcEEEEe
Q 001387 914 SAVEILDD-DIYLGAENNFNLFTVR 937 (1088)
Q Consensus 914 ~~~~~l~~-~~~l~~D~~gnl~~l~ 937 (1088)
.++.|-.+ +.+..+-+++.|....
T Consensus 297 n~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 297 NAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred eEEEeCCCCchhhhccCCceEEeee
Confidence 56666655 4455677777776654
No 253
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=23.96 E-value=84 Score=26.17 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=22.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHhc
Q 001387 1062 RMDEISKTMNVSVEELCKRVEELTR 1086 (1088)
Q Consensus 1062 ~q~~i~~~~~~~~~~i~~~l~~l~~ 1086 (1088)
.|++||+.+|++++.+.+.|.+|++
T Consensus 30 t~~~iA~~~g~sr~tv~r~l~~l~~ 54 (76)
T PF13545_consen 30 TQEEIADMLGVSRETVSRILKRLKD 54 (76)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999875
No 254
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=23.76 E-value=1e+03 Score=26.31 Aligned_cols=200 Identities=14% Similarity=0.211 Sum_probs=88.3
Q ss_pred CCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeC-CCceEEEEEECCCCceEeEEEEEEEcCCC
Q 001387 702 QKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDD-QTFEFISTYPLDTFEYGCSILSCSFSDDS 780 (1088)
Q Consensus 702 ~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~-~t~~~i~~~~~~~~E~v~si~~~~~~~~~ 780 (1088)
..|...++|.......|.+..+.+-++|.... .-++=-|. +||+.... ..+ ++.-..+..+.+..
T Consensus 6 ~~W~~v~l~t~~~l~dV~F~d~~~G~~VG~~g----------~il~T~DGG~tW~~~~~-~~~-~~~~~~l~~I~f~~-- 71 (302)
T PF14870_consen 6 NSWQQVSLPTDKPLLDVAFVDPNHGWAVGAYG----------TILKTTDGGKTWQPVSL-DLD-NPFDYHLNSISFDG-- 71 (302)
T ss_dssp --EEEEE-S-SS-EEEEEESSSS-EEEEETTT----------EEEEESSTTSS-EE------S------EEEEEEEET--
T ss_pred CCcEEeecCCCCceEEEEEecCCEEEEEecCC----------EEEEECCCCcccccccc-CCC-ccceeeEEEEEecC--
Confidence 46888888989999999999888888886421 11222232 56776542 111 11112333444543
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEeC--CeEEEEE-EEEecCceeEeccccCe-EE-EEECCEEEEEEeeeccCcc
Q 001387 781 NVYYCVGTAYVLPEENEPTKGRILVFIVED--GKLQLIA-EKETKGAVYSLNAFNGK-LL-AAINQKIQLYKWMLRDDGT 855 (1088)
Q Consensus 781 ~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~--~kl~~~~-~~~~~g~v~ai~~~~g~-Lv-~~~g~~l~v~~~~~~~~~~ 855 (1088)
.+-++||.. | +++.-.+ ...+.+. ....+|..+.+..+++. .+ ++.... +|. .+|+.
T Consensus 72 ~~g~ivG~~-----------g--~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~--iy~---T~DgG 133 (302)
T PF14870_consen 72 NEGWIVGEP-----------G--LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGA--IYR---TTDGG 133 (302)
T ss_dssp TEEEEEEET-----------T--EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT----EEE---ESSTT
T ss_pred CceEEEcCC-----------c--eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCc--EEE---eCCCC
Confidence 456677742 2 2344432 2455554 33567777777777543 33 232233 333 22444
Q ss_pred cccccccccccceEEEEEE--EeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCceEEEEccCCcE
Q 001387 856 RELQSECGHHGHILALYVQ--TRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNL 933 (1088)
Q Consensus 856 ~~L~~~~~~~~~~~~~~l~--~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l~~D~~gnl 933 (1088)
+....... .+......+. ..|.+++|+ .+|-.+..+++......+..|. .++.+.++.|-.++.+....+-|.|
T Consensus 134 ~tW~~~~~-~~~gs~~~~~r~~dG~~vavs--~~G~~~~s~~~G~~~w~~~~r~-~~~riq~~gf~~~~~lw~~~~Gg~~ 209 (302)
T PF14870_consen 134 KTWQAVVS-ETSGSINDITRSSDGRYVAVS--SRGNFYSSWDPGQTTWQPHNRN-SSRRIQSMGFSPDGNLWMLARGGQI 209 (302)
T ss_dssp SSEEEEE--S----EEEEEE-TTS-EEEEE--TTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEETTTEE
T ss_pred CCeeEccc-CCcceeEeEEECCCCcEEEEE--CcccEEEEecCCCccceEEccC-ccceehhceecCCCCEEEEeCCcEE
Confidence 44433211 1111122222 234455565 5555556666655557777766 3467778888777666555566666
Q ss_pred EEEe
Q 001387 934 FTVR 937 (1088)
Q Consensus 934 ~~l~ 937 (1088)
+.-.
T Consensus 210 ~~s~ 213 (302)
T PF14870_consen 210 QFSD 213 (302)
T ss_dssp EEEE
T ss_pred EEcc
Confidence 6555
No 255
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=23.47 E-value=2.7e+02 Score=19.59 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=26.2
Q ss_pred ccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEE
Q 001387 547 SQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVL 586 (1088)
Q Consensus 547 ~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~ 586 (1088)
...+.|+.|.++++.+++..+.+.+...... .-|+.+.
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg--~~P~~i~ 40 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKVIATIPVG--GYPFGVA 40 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEEEEEECC--CCCceEE
Confidence 4678888888899999998776665544343 3455554
No 256
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=23.43 E-value=7.9e+02 Score=24.91 Aligned_cols=92 Identities=20% Similarity=0.198 Sum_probs=56.4
Q ss_pred CCcCcceeEEEEEEeCCCceEEEEEECCCCce---EeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCe
Q 001387 736 SCAEESEMHFVRLLDDQTFEFISTYPLDTFEY---GCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGK 812 (1088)
Q Consensus 736 ~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~---v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~k 812 (1088)
++.+++..+.|-+.|..+.+. .++.+++.+. +--+ .| +. +..=.+++|-++ ...+..|-||+|.+..+.
T Consensus 80 ~~a~eEgiGkIYIkn~~~~~~-~~L~i~~~~~k~sPK~i-~W-iD-D~~L~vIIG~a~----GTvS~GGnLy~~nl~tg~ 151 (200)
T PF15525_consen 80 PEAEEEGIGKIYIKNLNNNNW-WSLQIDQNEEKYSPKYI-EW-ID-DNNLAVIIGYAH----GTVSKGGNLYKYNLNTGN 151 (200)
T ss_pred CccccccceeEEEEecCCCce-EEEEecCcccccCCcee-EE-ec-CCcEEEEEcccc----ceEccCCeEEEEEccCCc
Confidence 344556678888888655444 3344444431 2212 23 22 223345555543 256788999999999889
Q ss_pred EEEEEEE-EecCceeEeccccCeE
Q 001387 813 LQLIAEK-ETKGAVYSLNAFNGKL 835 (1088)
Q Consensus 813 l~~~~~~-~~~g~v~ai~~~~g~L 835 (1088)
++.+... +-+-.|.++...++.|
T Consensus 152 ~~~ly~~~dkkqQVis~e~~gd~L 175 (200)
T PF15525_consen 152 LTELYEWKDKKQQVISAEKNGDNL 175 (200)
T ss_pred eeEeeeccccceeEEEEEEeCCEE
Confidence 9988875 4577777777666665
No 257
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=23.27 E-value=98 Score=23.90 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=22.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhc
Q 001387 1061 TRMDEISKTMNVSVEELCKRVEELTR 1086 (1088)
Q Consensus 1061 ~~q~~i~~~~~~~~~~i~~~l~~l~~ 1086 (1088)
-...++|+.+|+|...|.+.|++|+.
T Consensus 16 it~~eLa~~l~vS~rTi~~~i~~L~~ 41 (55)
T PF08279_consen 16 ITAKELAEELGVSRRTIRRDIKELRE 41 (55)
T ss_dssp BEHHHHHHHCTS-HHHHHHHHHHHHH
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 46689999999999999999999875
No 258
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=23.09 E-value=1.9e+03 Score=29.16 Aligned_cols=76 Identities=12% Similarity=0.096 Sum_probs=46.3
Q ss_pred ceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecC--ceEEEEEe-CCCcEE
Q 001387 530 YEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEG--ISYLLCAL-GDGHLL 606 (1088)
Q Consensus 530 ~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~--~~~L~vgl-~~G~l~ 606 (1088)
+-||++++.+ ...++++|+. .|.+.+|++.=-.++.+-..+....++-+.+..... ...+..|. .++.+-
T Consensus 1196 G~vTSi~idp------~~~WlviGts-~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1196 GLVTSIVIDP------WCNWLVIGTS-RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred cceeEEEecC------CceEEEEecC-CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence 4578887765 3569999998 899999998643333332233334555666655543 23344455 566666
Q ss_pred EEEEec
Q 001387 607 NFLLNM 612 (1088)
Q Consensus 607 ~y~~~~ 612 (1088)
.|++..
T Consensus 1269 ~wn~~~ 1274 (1431)
T KOG1240|consen 1269 TWNMET 1274 (1431)
T ss_pred eeeccc
Confidence 666543
No 259
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=22.29 E-value=3.1e+02 Score=22.15 Aligned_cols=40 Identities=8% Similarity=0.190 Sum_probs=27.4
Q ss_pred eEEEEEeeCceEEEEccCCcEEEEeeCCCCCCcccccceeEEEEEE
Q 001387 913 MSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYH 958 (1088)
Q Consensus 913 v~~~~~l~~~~~l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~ 958 (1088)
...+..|.+++|.+-|.+|.+.+|+|+++. ..+..+-+|.
T Consensus 21 ts~m~ql~~N~Fav~~e~~~iKIfkyd~~t------Nei~L~KE~~ 60 (63)
T PF14157_consen 21 TSNMTQLEHNHFAVVDEDGQIKIFKYDEDT------NEITLKKEFY 60 (63)
T ss_dssp -EEEEE-STTEEEEE-ETTEEEEEEEETTT------TEEEEEEEEE
T ss_pred cCceEEecCCEEEEEecCCeEEEEEeCCCC------CeEEEEEeee
Confidence 345667888898888999999999999854 3455555554
No 260
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=21.97 E-value=1.4e+03 Score=27.41 Aligned_cols=107 Identities=16% Similarity=0.192 Sum_probs=74.7
Q ss_pred ecCCCEEEEEEeecC--CCcCcceeEEEEEEeCCCceEEEEEE-CCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCC
Q 001387 721 QEQSRTFAICSLKNQ--SCAEESEMHFVRLLDDQTFEFISTYP-LDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENE 797 (1088)
Q Consensus 721 ~~~~~~~~v~~~~~~--~~~~~~~~s~l~lid~~t~~~i~~~~-~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~ 797 (1088)
++....+-|++.... ...+......|-++| .+++.+.+.+ +.++|++.|+..+ +...++|-=-...
T Consensus 279 dE~~G~LRvaTT~~~~~~~~~~~s~N~lyVLD-~~L~~vG~l~~la~gE~IysvRF~-----Gd~~Y~VTFrqvD----- 347 (521)
T PF09826_consen 279 DEYDGYLRVATTSGNWWWDSEDTSSNNLYVLD-EDLKIVGSLEGLAPGERIYSVRFM-----GDRAYLVTFRQVD----- 347 (521)
T ss_pred eccCCEEEEEEecCcccccCCCCceEEEEEEC-CCCcEeEEccccCCCceEEEEEEe-----CCeEEEEEEeecC-----
Confidence 445556666665431 223445678888888 6899998875 8999999988765 3444444333333
Q ss_pred CcceEEEEEEEeC-CeEEEEEEEEecCceeEeccccCeEEEEECCE
Q 001387 798 PTKGRILVFIVED-GKLQLIAEKETKGAVYSLNAFNGKLLAAINQK 842 (1088)
Q Consensus 798 ~~~Gri~v~~i~~-~kl~~~~~~~~~g~v~ai~~~~g~Lv~~~g~~ 842 (1088)
=++++++.+ .+-+++.+.+++|==.-+.++++..++++|..
T Consensus 348 ----PLfviDLsdP~~P~vlGeLKIPGfS~YLHP~~e~~LlGiG~~ 389 (521)
T PF09826_consen 348 ----PLFVIDLSDPANPKVLGELKIPGFSDYLHPYDENHLLGIGKD 389 (521)
T ss_pred ----ceEEEECCCCCCCceeeEEECccchhceeECCCCeEEEEccc
Confidence 367777765 46889999999998888888888888888854
No 261
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=21.81 E-value=8.3e+02 Score=31.25 Aligned_cols=120 Identities=15% Similarity=0.080 Sum_probs=66.5
Q ss_pred eEEEEEEecCCCcccEEEEcCC-EEEEEEeCCC----------CeEEEEEEEeeeeEeE--EeeeccCCCCccEEEEEeC
Q 001387 17 THSCVGNFTSPQELNLIIAKCT-RIEIHLLTPQ----------GLQPMLDVPIYGRIAT--LELFRPHGEAQDFLFIATE 83 (1088)
Q Consensus 17 ~~av~~~f~~~~~~~Lvv~k~~-~le~y~~~~~----------~L~~~~~~~l~~~i~~--i~~~r~~~~~~d~L~v~~~ 83 (1088)
..++.|-+.+++..+|...-.. .+.+|+-.+. +...+.......+.++ -.......+.-|.+++ +.
T Consensus 69 ~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lv-S~ 147 (942)
T KOG0973|consen 69 DGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLV-SV 147 (942)
T ss_pred cCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEE-Ee
Confidence 3467777667888899988755 6788876631 1222222222111111 0000001122244444 44
Q ss_pred cCeEEEEEEeCCCCcEEEEEeeeccCCCCccCCCCCeEEECCCCCEEEEEecCCeEEEEeCC
Q 001387 84 RYKFCVLQWDAESSELITRAMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFD 145 (1088)
Q Consensus 84 ~~~~~il~~~~~~~~~~t~s~~~~~~~~~r~~~~~~~l~vdp~~r~~~~~~~~~~l~i~p~~ 145 (1088)
+..-+++-||..+.+..++- ..- .....=+..||-|+++|....++.++|+...
T Consensus 148 s~DnsViiwn~~tF~~~~vl----~~H----~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~ 201 (942)
T KOG0973|consen 148 SLDNSVIIWNAKTFELLKVL----RGH----QSLVKGVSWDPIGKYFASQSDDRTLKVWRTS 201 (942)
T ss_pred cccceEEEEccccceeeeee----ecc----cccccceEECCccCeeeeecCCceEEEEEcc
Confidence 66667777887654443331 111 1112246889999999999999999999743
No 262
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=21.49 E-value=1.1e+03 Score=25.78 Aligned_cols=100 Identities=15% Similarity=0.081 Sum_probs=52.3
Q ss_pred EEEEECCCeEEEEEEcC----cEEEEEeeccCCc-eeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEec
Q 001387 501 VLLATGGGHLVYLEIGD----GILTEVKHAQLEY-EISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEH 575 (1088)
Q Consensus 501 lvv~~~~~~l~~~~~~~----~~l~~~~~~~l~~-~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~ 575 (1088)
++.+...|.+.+++.+. ..|..+....+.. +.-|+++.+. +.-++++.. +|++.+.+.....+...+.
T Consensus 88 l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~------~~~i~vs~s-~G~~~~v~~t~~~le~vq~ 160 (339)
T KOG0280|consen 88 LLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTS------GTKIFVSDS-RGSISGVYETEMVLEKVQT 160 (339)
T ss_pred eeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeecc------CceEEEEcC-CCcEEEEecceeeeeeccc
Confidence 34444567777777654 2244443333332 2446677553 344777766 7777755543211111111
Q ss_pred CCCCcCceeEEe--eeec--CceEEEEEeCCCcEEEEEEe
Q 001387 576 LGGEIIPRSVLL--CAFE--GISYLLCALGDGHLLNFLLN 611 (1088)
Q Consensus 576 l~~~~~p~si~~--~~~~--~~~~L~vgl~~G~l~~y~~~ 611 (1088)
..++.... +.++ ..+.++-|..||.+..+.+.
T Consensus 161 ----wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R 196 (339)
T KOG0280|consen 161 ----WKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIR 196 (339)
T ss_pred ----ccccceeeeeeecccCCCceEEecCCCceEEEEEec
Confidence 12222211 1222 23567889999999999887
No 263
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=20.87 E-value=1.6e+02 Score=21.72 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=20.5
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCHHHHHHHHH
Q 001387 1051 LIESFLDLSRTRMDEISKTMNVSVEELCKRVE 1082 (1088)
Q Consensus 1051 ll~~fl~l~~~~q~~i~~~~~~~~~~i~~~l~ 1082 (1088)
.|+.+++.. ..+.+||+.+|+++..|.+.|.
T Consensus 12 ~I~~l~~~G-~s~~~IA~~lg~s~sTV~relk 42 (44)
T PF13936_consen 12 QIEALLEQG-MSIREIAKRLGRSRSTVSRELK 42 (44)
T ss_dssp HHHHHHCS----HHHHHHHTT--HHHHHHHHH
T ss_pred HHHHHHHcC-CCHHHHHHHHCcCcHHHHHHHh
Confidence 466666655 5667899999999999988764
No 264
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=20.85 E-value=4.1e+02 Score=30.36 Aligned_cols=74 Identities=24% Similarity=0.296 Sum_probs=45.1
Q ss_pred CceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceE-E-ecCCCCcCceeEEeeee--cCceEEEEEeCCCc
Q 001387 529 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLIT-K-EHLGGEIIPRSVLLCAF--EGISYLLCALGDGH 604 (1088)
Q Consensus 529 ~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~-~-~~l~~~~~p~si~~~~~--~~~~~L~vgl~~G~ 604 (1088)
+.++.|++++|.. +..++-|.- |+++.+|++.+|.... + +.-. ..+.-+.+ +....|-.+..||.
T Consensus 272 ~~~vn~~~fnp~~-----~~ilAT~S~-D~tV~LwDlRnL~~~lh~~e~H~-----dev~~V~WSPh~etvLASSg~D~r 340 (422)
T KOG0264|consen 272 SAEVNCVAFNPFN-----EFILATGSA-DKTVALWDLRNLNKPLHTFEGHE-----DEVFQVEWSPHNETVLASSGTDRR 340 (422)
T ss_pred CCceeEEEeCCCC-----CceEEeccC-CCcEEEeechhcccCceeccCCC-----cceEEEEeCCCCCceeEecccCCc
Confidence 5789999998853 445555544 9999999999875421 1 1111 11111222 12334445668999
Q ss_pred EEEEEEecC
Q 001387 605 LLNFLLNMK 613 (1088)
Q Consensus 605 l~~y~~~~~ 613 (1088)
|.++.+...
T Consensus 341 l~vWDls~i 349 (422)
T KOG0264|consen 341 LNVWDLSRI 349 (422)
T ss_pred EEEEecccc
Confidence 999988654
No 265
>PRK12784 hypothetical protein; Provisional
Probab=20.29 E-value=4.6e+02 Score=22.15 Aligned_cols=52 Identities=8% Similarity=0.181 Sum_probs=38.2
Q ss_pred EEEEEcCCcCeEEEEEEecCcEEeeEEEEEcCccccceEEEEecCCeEEEeee
Q 001387 267 RYLLGDHAGLLHLLVITHEKEKVTGLKIELLGETSIASTISYLDNAVVYIGSS 319 (1088)
Q Consensus 267 ~~ll~~~~G~l~~l~l~~~~~~v~~~~i~~~~~~~~~s~l~~l~~~~lf~gS~ 319 (1088)
.+++-+.+|.+-.+.+-..| .++.+.++.=.....-..|.++.++++.-|++
T Consensus 33 L~~I~~~dg~le~v~vGiSG-~I~~v~Ve~Gq~i~~dtlL~~~edDllitG~~ 84 (84)
T PRK12784 33 LMMIRKNNGELEKVAVGISG-NIRLVNVVVGQQIHTDTLLVRLEDDLLITGCE 84 (84)
T ss_pred eeEEeecCCcEEEEEEeeee-eEEEEEeecCceecCCcEEEEEeeceEeecCC
Confidence 46788889999998887655 46666665534455556889999999988763
No 266
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=20.24 E-value=1.7e+02 Score=21.29 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=22.4
Q ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHHhc
Q 001387 1059 SRTRMDEISKTMNVSVEELCKRVEELTR 1086 (1088)
Q Consensus 1059 ~~~~q~~i~~~~~~~~~~i~~~l~~l~~ 1086 (1088)
+.+++.++|+..|.+..+|....-+-||
T Consensus 12 s~~ek~~L~~~tgls~~Qi~~WF~NaRr 39 (40)
T PF05920_consen 12 SKEEKEELAKQTGLSRKQISNWFINARR 39 (40)
T ss_dssp -HHHHHHHHHHHTS-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHhHc
Confidence 5788899999999999999988777664
Done!