Query 001387
Match_columns 1088
No_of_seqs 198 out of 758
Neff 9.3
Searched_HMMs 29240
Date Tue Mar 26 01:28:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001387.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001387hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ei3_A DNA damage-binding prot 100.0 7E-176 2E-180 1676.8 142.3 1080 2-1088 19-1158(1158)
2 1pgu_A Actin interacting prote 99.1 2.4E-05 8.2E-10 94.9 56.3 400 467-940 183-614 (615)
3 3sfz_A APAF-1, apoptotic pepti 98.8 0.00017 5.8E-09 95.7 51.1 592 303-999 618-1246(1249)
4 1pgu_A Actin interacting prote 98.8 0.00062 2.1E-08 82.3 52.1 461 466-999 38-611 (615)
5 1nr0_A Actin interacting prote 98.7 0.002 6.8E-08 78.2 61.7 417 467-938 170-609 (611)
6 3sfz_A APAF-1, apoptotic pepti 98.6 0.00076 2.6E-08 89.5 50.3 402 489-940 616-1074(1249)
7 3v7d_B Cell division control p 98.6 0.00062 2.1E-08 79.3 42.3 329 491-892 125-458 (464)
8 2ymu_A WD-40 repeat protein; u 98.3 0.016 5.5E-07 69.2 67.6 546 299-936 15-576 (577)
9 3gre_A Serine/threonine-protei 98.2 0.00034 1.2E-08 80.8 29.1 332 529-937 63-437 (437)
10 1nr0_A Actin interacting prote 98.2 0.015 5E-07 70.4 43.8 107 872-999 455-564 (611)
11 3mkq_A Coatomer beta'-subunit; 98.2 0.003 1E-07 79.3 37.9 268 490-788 15-291 (814)
12 2ymu_A WD-40 repeat protein; u 98.2 0.032 1.1E-06 66.6 65.0 550 344-997 11-575 (577)
13 4aez_A CDC20, WD repeat-contai 98.1 0.0031 1E-07 71.9 32.4 276 494-812 99-382 (401)
14 2ovr_B FBW7, F-BOX/WD repeat p 98.1 0.015 5.3E-07 66.9 38.8 303 490-849 121-441 (445)
15 4g56_B MGC81050 protein; prote 98.0 0.0007 2.4E-08 76.0 24.8 282 528-848 41-341 (357)
16 1got_B GT-beta; complex (GTP-b 98.0 0.005 1.7E-07 68.3 31.5 277 529-846 55-339 (340)
17 3zwl_B Eukaryotic translation 98.0 0.019 6.4E-07 63.7 36.2 286 528-849 31-345 (369)
18 1sq9_A Antiviral protein SKI8; 98.0 0.016 5.4E-07 65.4 35.7 287 489-811 17-396 (397)
19 1ri6_A Putative isomerase YBHE 98.0 0.015 5.3E-07 63.8 34.2 291 547-906 4-318 (343)
20 2ovr_B FBW7, F-BOX/WD repeat p 97.9 0.012 4.1E-07 67.9 34.4 305 532-897 122-443 (445)
21 4ery_A WD repeat-containing pr 97.9 0.0086 2.9E-07 65.2 31.5 276 529-847 23-309 (312)
22 3v7d_B Cell division control p 97.9 0.032 1.1E-06 64.5 38.0 181 721-936 277-459 (464)
23 1k8k_C P40, ARP2/3 complex 41 97.9 0.014 4.7E-07 65.1 33.5 294 489-848 9-359 (372)
24 3mmy_A MRNA export factor; mRN 97.9 0.011 3.7E-07 65.6 32.3 271 489-790 40-336 (368)
25 1sq9_A Antiviral protein SKI8; 97.9 0.016 5.6E-07 65.3 34.1 283 529-849 16-394 (397)
26 1gxr_A ESG1, transducin-like e 97.9 0.0056 1.9E-07 67.1 28.9 261 684-999 65-334 (337)
27 1r5m_A SIR4-interacting protei 97.9 0.0089 3E-07 67.9 31.5 272 530-849 46-360 (425)
28 3zwl_B Eukaryotic translation 97.8 0.062 2.1E-06 59.4 38.1 288 489-809 33-345 (369)
29 3odt_A Protein DOA1; ubiquitin 97.8 0.013 4.4E-07 63.4 30.4 272 529-849 18-295 (313)
30 4aow_A Guanine nucleotide-bind 97.8 0.016 5.4E-07 63.6 31.6 279 529-849 38-336 (340)
31 3mkq_A Coatomer beta'-subunit; 97.8 0.16 5.4E-06 63.4 52.7 135 469-611 79-216 (814)
32 2vdu_B TRNA (guanine-N(7)-)-me 97.8 0.044 1.5E-06 63.2 36.5 113 713-849 242-390 (450)
33 3odt_A Protein DOA1; ubiquitin 97.8 0.062 2.1E-06 57.9 36.9 271 489-811 19-297 (313)
34 1ri6_A Putative isomerase YBHE 97.8 0.047 1.6E-06 59.8 34.6 246 691-967 60-329 (343)
35 3scy_A Hypothetical bacterial 97.8 0.084 2.9E-06 58.6 36.5 296 593-919 13-360 (361)
36 3vl1_A 26S proteasome regulato 97.7 0.025 8.7E-07 64.3 32.4 288 497-848 108-417 (420)
37 3ei3_B DNA damage-binding prot 97.7 0.019 6.5E-07 64.5 30.8 292 529-848 73-380 (383)
38 1r5m_A SIR4-interacting protei 97.7 0.024 8.4E-07 64.2 32.0 271 490-808 110-423 (425)
39 4aez_A CDC20, WD repeat-contai 97.7 0.098 3.4E-06 59.1 36.9 260 466-758 112-385 (401)
40 3hfq_A Uncharacterized protein 97.7 0.1 3.6E-06 57.4 35.4 283 594-907 3-328 (347)
41 2pbi_B Guanine nucleotide-bind 97.7 0.063 2.1E-06 59.7 33.0 279 529-846 64-353 (354)
42 1yfq_A Cell cycle arrest prote 97.6 0.0049 1.7E-07 67.9 23.6 262 529-839 11-310 (342)
43 3i2n_A WD repeat-containing pr 97.6 0.078 2.7E-06 58.4 33.2 248 489-752 19-290 (357)
44 4gqb_B Methylosome protein 50; 97.6 0.024 8.3E-07 62.9 28.6 282 528-848 29-329 (344)
45 1gxr_A ESG1, transducin-like e 97.6 0.13 4.3E-06 56.0 36.9 280 298-611 49-336 (337)
46 3vl1_A 26S proteasome regulato 97.6 0.074 2.5E-06 60.3 32.7 310 593-939 68-418 (420)
47 1nir_A Nitrite reductase; hemo 97.6 0.13 4.3E-06 61.0 35.5 333 548-908 149-524 (543)
48 3bws_A Protein LP49; two-domai 97.5 0.19 6.7E-06 57.1 36.0 294 518-848 111-430 (433)
49 2pm9_A Protein WEB1, protein t 97.5 0.00079 2.7E-08 76.9 15.3 287 530-849 13-336 (416)
50 3iz6_a 40S ribosomal protein R 97.5 0.014 4.8E-07 65.8 25.5 282 529-848 66-373 (380)
51 3i2n_A WD repeat-containing pr 97.5 0.025 8.5E-07 62.5 27.2 224 690-940 43-291 (357)
52 3jrp_A Fusion protein of prote 97.5 0.026 8.8E-07 62.9 27.5 199 713-940 12-240 (379)
53 3k26_A Polycomb protein EED; W 97.5 0.044 1.5E-06 60.6 28.9 272 688-999 41-363 (366)
54 3dw8_B Serine/threonine-protei 97.5 0.014 4.7E-07 67.2 25.3 76 529-612 28-126 (447)
55 3mmy_A MRNA export factor; mRN 97.5 0.028 9.6E-07 62.2 27.1 194 713-941 40-248 (368)
56 2ynn_A Coatomer subunit beta'; 97.5 0.18 6.2E-06 54.4 35.0 277 529-848 13-300 (304)
57 4gga_A P55CDC, cell division c 97.5 0.052 1.8E-06 61.9 29.6 271 532-848 108-393 (420)
58 1l0q_A Surface layer protein; 97.4 0.19 6.4E-06 56.3 33.7 261 468-763 13-285 (391)
59 3k26_A Polycomb protein EED; W 97.4 0.089 3E-06 58.1 30.4 120 488-612 18-147 (366)
60 3u4y_A Uncharacterized protein 97.4 0.13 4.5E-06 56.0 31.4 282 467-825 20-319 (331)
61 3ow8_A WD repeat-containing pr 97.4 0.074 2.5E-06 58.2 28.7 280 528-848 31-319 (321)
62 4ggc_A P55CDC, cell division c 97.3 0.066 2.3E-06 57.8 27.4 272 532-848 28-313 (318)
63 2aq5_A Coronin-1A; WD40 repeat 97.3 0.012 4.2E-07 66.7 22.0 266 557-849 56-341 (402)
64 1yfq_A Cell cycle arrest prote 97.3 0.13 4.3E-06 56.3 29.8 271 488-790 11-313 (342)
65 4e54_B DNA damage-binding prot 97.3 0.0039 1.3E-07 71.9 18.0 297 528-848 118-428 (435)
66 3scy_A Hypothetical bacterial 97.3 0.31 1.1E-05 53.9 36.6 271 547-849 13-336 (361)
67 1vyh_C Platelet-activating fac 97.3 0.2 6.8E-06 56.9 31.9 276 489-808 109-409 (410)
68 3lrv_A PRE-mRNA-splicing facto 97.3 0.035 1.2E-06 61.4 24.8 162 713-902 126-298 (343)
69 1l0q_A Surface layer protein; 97.3 0.24 8.2E-06 55.4 32.3 214 690-939 11-232 (391)
70 1p22_A F-BOX/WD-repeat protein 97.3 0.087 3E-06 60.3 28.7 256 690-1001 152-413 (435)
71 3jrp_A Fusion protein of prote 97.3 0.065 2.2E-06 59.5 26.7 233 684-940 25-287 (379)
72 2oaj_A Protein SNI1; WD40 repe 97.2 0.86 2.9E-05 57.5 50.0 109 490-612 19-129 (902)
73 3gre_A Serine/threonine-protei 97.2 0.12 4E-06 59.1 29.2 222 690-940 85-359 (437)
74 3bws_A Protein LP49; two-domai 97.2 0.16 5.3E-06 57.9 30.0 222 690-939 190-431 (433)
75 1p22_A F-BOX/WD-repeat protein 97.2 0.13 4.6E-06 58.7 28.9 208 744-1000 153-363 (435)
76 1pby_B Quinohemoprotein amine 97.2 0.086 2.9E-06 57.4 26.0 141 690-848 10-161 (337)
77 2vdu_B TRNA (guanine-N(7)-)-me 97.1 0.17 5.8E-06 58.2 29.5 153 773-939 107-270 (450)
78 4h5i_A Guanine nucleotide-exch 97.1 0.21 7.2E-06 55.6 29.2 289 526-848 11-341 (365)
79 1k8k_C P40, ARP2/3 complex 41 97.1 0.088 3E-06 58.3 26.1 227 684-940 22-274 (372)
80 1vyh_C Platelet-activating fac 97.1 0.36 1.2E-05 54.6 31.1 273 529-847 108-408 (410)
81 4a11_B DNA excision repair pro 97.0 0.26 8.8E-06 55.2 29.1 116 489-612 44-175 (408)
82 4e54_B DNA damage-binding prot 97.0 0.11 3.7E-06 59.6 26.1 294 488-812 119-432 (435)
83 3f3f_A Nucleoporin SEH1; struc 97.0 0.31 1.1E-05 52.8 28.4 78 529-613 11-91 (351)
84 4gqb_B Methylosome protein 50; 97.0 0.13 4.3E-06 57.0 25.1 219 689-941 101-332 (344)
85 4ery_A WD repeat-containing pr 97.0 0.56 1.9E-05 50.5 34.4 277 489-808 24-310 (312)
86 2pm9_A Protein WEB1, protein t 97.0 0.023 7.7E-07 64.5 19.3 270 506-811 43-338 (416)
87 4gga_A P55CDC, cell division c 96.9 0.67 2.3E-05 52.5 31.2 268 498-809 116-394 (420)
88 3ei3_B DNA damage-binding prot 96.9 0.79 2.7E-05 50.9 31.8 291 489-809 74-381 (383)
89 3f3f_A Nucleoporin SEH1; struc 96.9 0.26 9E-06 53.4 26.8 201 713-940 12-249 (351)
90 4h5i_A Guanine nucleotide-exch 96.9 0.052 1.8E-06 60.7 21.1 200 715-942 136-345 (365)
91 1got_B GT-beta; complex (GTP-b 96.9 0.77 2.6E-05 50.2 32.2 262 490-788 57-331 (340)
92 3vgz_A Uncharacterized protein 96.9 0.76 2.6E-05 50.1 32.8 215 695-938 71-301 (353)
93 4a11_B DNA excision repair pro 96.8 0.26 9E-06 55.1 26.9 221 685-939 159-404 (408)
94 4g56_B MGC81050 protein; prote 96.8 0.022 7.7E-07 63.5 17.6 195 713-941 140-344 (357)
95 3jro_A Fusion protein of prote 96.8 0.11 3.7E-06 64.5 24.9 198 714-940 11-238 (753)
96 1erj_A Transcriptional repress 96.7 0.49 1.7E-05 53.2 27.9 200 711-940 63-287 (393)
97 3ow8_A WD repeat-containing pr 96.7 0.92 3.2E-05 49.2 36.5 274 490-808 34-319 (321)
98 3dm0_A Maltose-binding peripla 96.7 1.6 5.6E-05 53.1 34.1 242 529-813 382-635 (694)
99 3vu4_A KMHSV2; beta-propeller 96.6 0.44 1.5E-05 52.7 26.4 228 712-1000 19-269 (355)
100 1erj_A Transcriptional repress 96.6 1.2 4.3E-05 49.7 33.1 278 528-849 63-388 (393)
101 2aq5_A Coronin-1A; WD40 repeat 96.6 0.15 5.1E-06 57.6 22.7 199 713-939 132-341 (402)
102 3fm0_A Protein CIAO1; WDR39,SG 96.6 1.1 3.8E-05 49.1 33.3 275 690-1003 37-336 (345)
103 1q7f_A NHL, brain tumor CG1071 96.6 0.75 2.6E-05 48.7 27.1 200 714-941 78-281 (286)
104 3u4y_A Uncharacterized protein 96.5 1.2 4.2E-05 48.1 31.2 266 547-849 9-303 (331)
105 3dm0_A Maltose-binding peripla 96.5 1.4 4.8E-05 53.7 32.0 278 490-809 384-692 (694)
106 2ynn_A Coatomer subunit beta'; 96.5 1.2 4.2E-05 47.7 34.9 136 468-611 78-216 (304)
107 1qks_A Cytochrome CD1 nitrite 96.5 2.2 7.5E-05 50.4 34.7 277 547-849 166-476 (567)
108 2hes_X YDR267CP; beta-propelle 96.4 1.6 5.3E-05 47.5 33.7 115 489-612 15-138 (330)
109 1jof_A Carboxy-CIS,CIS-muconat 96.3 1.7 5.9E-05 47.9 31.2 228 710-963 80-356 (365)
110 3vgz_A Uncharacterized protein 96.3 1.6 5.5E-05 47.5 32.7 227 529-789 88-333 (353)
111 3hfq_A Uncharacterized protein 96.3 1.7 5.8E-05 47.4 30.9 226 691-941 63-318 (347)
112 2xzm_R RACK1; ribosome, transl 96.3 1.7 5.9E-05 47.4 36.1 270 499-809 40-339 (343)
113 1nir_A Nitrite reductase; hemo 96.3 2.7 9.2E-05 49.5 32.5 326 467-814 159-518 (543)
114 3vu4_A KMHSV2; beta-propeller 96.2 0.5 1.7E-05 52.2 23.5 220 684-941 33-272 (355)
115 2hes_X YDR267CP; beta-propelle 96.2 1.8 6.3E-05 46.9 33.0 219 690-939 33-279 (330)
116 3frx_A Guanine nucleotide-bind 96.2 1.8 6.1E-05 46.7 34.2 277 529-848 17-315 (319)
117 3dwl_C Actin-related protein 2 96.2 0.36 1.2E-05 53.6 22.2 183 684-894 69-279 (377)
118 3jro_A Fusion protein of prote 96.2 0.25 8.6E-06 61.2 22.5 231 684-940 23-285 (753)
119 2pm7_B Protein transport prote 96.1 0.51 1.7E-05 50.6 22.2 198 714-940 11-238 (297)
120 3no2_A Uncharacterized protein 95.9 1.9 6.5E-05 45.6 25.2 224 682-940 4-251 (276)
121 2pbi_B Guanine nucleotide-bind 95.9 2.7 9.2E-05 46.2 29.9 214 690-936 127-353 (354)
122 1jmx_B Amine dehydrogenase; ox 95.8 2.6 9E-05 45.6 27.4 63 690-764 274-336 (349)
123 2xyi_A Probable histone-bindin 95.8 0.43 1.5E-05 54.4 20.9 256 706-1000 122-408 (430)
124 3dw8_B Serine/threonine-protei 95.8 0.8 2.7E-05 52.0 23.3 197 713-940 29-315 (447)
125 3sjl_D Methylamine dehydrogena 95.8 3.1 0.00011 46.1 29.8 263 535-828 83-379 (386)
126 2xyi_A Probable histone-bindin 95.7 0.9 3.1E-05 51.7 23.3 253 520-809 119-409 (430)
127 2xzm_R RACK1; ribosome, transl 95.7 3.2 0.00011 45.2 29.3 218 690-940 48-285 (343)
128 1jmx_B Amine dehydrogenase; ox 95.6 3.2 0.00011 44.9 26.3 143 690-848 20-173 (349)
129 3lrv_A PRE-mRNA-splicing facto 95.5 2.3 7.9E-05 46.4 24.6 137 466-612 103-244 (343)
130 3frx_A Guanine nucleotide-bind 95.4 3.6 0.00012 44.3 37.2 274 490-809 19-316 (319)
131 3dsm_A Uncharacterized protein 95.4 3.9 0.00013 44.3 27.9 181 695-899 107-303 (328)
132 3fm0_A Protein CIAO1; WDR39,SG 95.3 4.3 0.00015 44.2 36.5 114 490-612 18-136 (345)
133 3bg1_A Protein SEC13 homolog; 95.2 1.1 3.8E-05 48.3 20.6 245 713-999 14-290 (316)
134 4aow_A Guanine nucleotide-bind 95.0 4.7 0.00016 43.3 40.6 283 298-612 36-337 (340)
135 3dsm_A Uncharacterized protein 95.0 4.9 0.00017 43.5 27.1 232 467-722 64-321 (328)
136 2oaj_A Protein SNI1; WD40 repe 95.0 11 0.00037 47.3 61.7 116 712-848 575-730 (902)
137 3dwl_C Actin-related protein 2 94.8 0.16 5.4E-06 56.5 12.7 226 690-939 32-280 (377)
138 4ggc_A P55CDC, cell division c 94.8 4.9 0.00017 42.6 31.8 261 685-998 39-311 (318)
139 2pm7_B Protein transport prote 94.3 6.3 0.00022 41.7 25.2 224 690-940 30-285 (297)
140 3iz6_a 40S ribosomal protein R 94.3 0.56 1.9E-05 52.3 15.7 197 716-940 161-375 (380)
141 1pby_B Quinohemoprotein amine 93.9 7.9 0.00027 41.3 30.7 262 501-812 4-312 (337)
142 2iwa_A Glutamine cyclotransfer 93.6 8 0.00027 40.4 21.6 166 705-900 11-183 (266)
143 3ei3_A DNA damage-binding prot 93.2 26 0.00089 45.0 71.9 191 724-938 844-1060(1158)
144 2hqs_A Protein TOLB; TOLB, PAL 93.1 13 0.00046 41.5 25.0 217 691-938 159-385 (415)
145 3c75_H MADH, methylamine dehyd 93.0 8.2 0.00028 43.5 22.0 196 547-760 188-409 (426)
146 3sjl_D Methylamine dehydrogena 92.5 15 0.00052 40.6 28.6 63 693-763 311-373 (386)
147 1q7f_A NHL, brain tumor CG1071 92.4 12 0.0004 39.1 26.6 194 714-937 31-235 (286)
148 3e5z_A Putative gluconolactona 92.4 12 0.00041 39.4 21.8 100 713-838 28-131 (296)
149 2ojh_A Uncharacterized protein 91.2 11 0.00036 39.1 19.5 191 684-901 55-261 (297)
150 3bg1_A Protein SEC13 homolog; 91.0 18 0.00063 38.4 27.3 118 489-612 14-136 (316)
151 2j04_A TAU60, YPL007P, hypothe 90.2 7.5 0.00026 45.3 17.8 189 713-938 86-295 (588)
152 3c75_H MADH, methylamine dehyd 90.0 28 0.00097 39.0 28.3 271 508-812 99-404 (426)
153 2qc5_A Streptogramin B lactona 89.6 21 0.00073 37.0 20.6 197 706-937 10-215 (300)
154 3q7m_A Lipoprotein YFGL, BAMB; 89.6 27 0.00091 38.1 32.7 127 466-609 248-375 (376)
155 2j04_A TAU60, YPL007P, hypothe 89.2 4.4 0.00015 47.2 14.9 109 714-848 131-252 (588)
156 2z2n_A Virginiamycin B lyase; 88.3 26 0.00088 36.3 30.8 218 685-939 70-294 (299)
157 3q7m_A Lipoprotein YFGL, BAMB; 88.2 33 0.0011 37.4 32.0 135 468-619 64-212 (376)
158 3nol_A Glutamine cyclotransfer 87.7 28 0.00096 36.0 21.2 167 705-902 33-205 (262)
159 2oiz_A Aromatic amine dehydrog 86.9 39 0.0013 36.8 28.6 65 694-771 287-353 (361)
160 2j04_B YDR362CP, TAU91; beta p 86.8 32 0.0011 39.9 20.8 223 557-808 182-426 (524)
161 3p5b_L Low density lipoprotein 86.4 45 0.0015 37.0 22.3 131 800-937 180-317 (400)
162 3e5z_A Putative gluconolactona 85.6 33 0.0011 35.8 18.7 203 713-939 69-285 (296)
163 3no2_A Uncharacterized protein 85.6 31 0.0011 35.9 18.3 169 744-940 15-193 (276)
164 3m0c_C LDL receptor, low-densi 85.4 43 0.0015 41.0 21.5 132 799-937 491-629 (791)
165 2j04_B YDR362CP, TAU91; beta p 84.5 8.5 0.00029 44.9 14.3 193 713-938 208-426 (524)
166 3nok_A Glutaminyl cyclase; bet 83.6 42 0.0014 34.7 17.2 163 705-901 45-213 (268)
167 3mbr_X Glutamine cyclotransfer 82.6 46 0.0016 34.0 22.0 165 706-901 12-182 (243)
168 2ece_A 462AA long hypothetical 81.9 50 0.0017 37.1 18.2 81 532-621 323-433 (462)
169 3g4e_A Regucalcin; six bladed 80.5 59 0.002 33.9 28.3 191 707-919 48-249 (297)
170 2vpj_A Kelch-like protein 12; 80.4 52 0.0018 34.4 17.8 165 744-927 78-260 (301)
171 1mda_H Methylamine dehydrogena 79.9 37 0.0013 37.2 16.5 61 697-766 298-359 (368)
172 2qc5_A Streptogramin B lactona 79.7 59 0.002 33.4 23.4 181 713-929 104-290 (300)
173 2oiz_A Aromatic amine dehydrog 79.7 74 0.0025 34.5 30.4 284 509-828 32-353 (361)
174 2z3z_A Dipeptidyl aminopeptida 79.6 1.1E+02 0.0038 36.5 31.4 238 684-939 134-434 (706)
175 2w18_A PALB2, fancn, partner a 79.6 74 0.0025 34.5 21.4 60 498-565 295-355 (356)
176 2mad_H Methylamine dehydrogena 79.2 78 0.0027 34.6 32.7 58 695-760 300-357 (373)
177 3hrp_A Uncharacterized protein 78.0 90 0.0031 34.6 20.4 193 685-906 144-362 (409)
178 2p4o_A Hypothetical protein; p 77.6 74 0.0025 33.4 21.4 208 694-930 54-278 (306)
179 1xip_A Nucleoporin NUP159; bet 77.4 18 0.0006 40.1 12.8 127 686-849 53-190 (388)
180 3nok_A Glutaminyl cyclase; bet 77.4 70 0.0024 33.1 16.3 158 754-940 43-208 (268)
181 3mbr_X Glutamine cyclotransfer 77.1 62 0.0021 33.0 15.8 115 813-937 9-130 (243)
182 1npe_A Nidogen, entactin; glyc 77.1 69 0.0023 32.7 24.2 191 713-937 36-235 (267)
183 1qks_A Cytochrome CD1 nitrite 76.8 1.2E+02 0.0041 35.4 30.8 103 467-573 177-281 (567)
184 1rwi_B Serine/threonine-protei 76.6 68 0.0023 32.5 19.0 192 713-938 24-220 (270)
185 1ijq_A LDL receptor, low-densi 75.6 87 0.003 33.2 25.3 221 684-939 3-235 (316)
186 1jof_A Carboxy-CIS,CIS-muconat 75.5 94 0.0032 33.5 36.2 142 691-849 167-340 (365)
187 2mad_H Methylamine dehydrogena 75.2 1E+02 0.0034 33.7 33.7 81 718-812 272-352 (373)
188 4asc_A Kelch repeat and BTB do 74.9 88 0.003 32.9 21.9 226 684-925 6-248 (315)
189 2ojh_A Uncharacterized protein 74.8 77 0.0026 32.2 31.6 105 713-830 173-279 (297)
190 2dg1_A DRP35, lactonase; beta 74.5 90 0.0031 32.9 26.2 157 714-894 46-211 (333)
191 1fwx_A Nitrous oxide reductase 72.7 1.3E+02 0.0045 35.0 18.8 134 682-829 286-450 (595)
192 3sov_A LRP-6, low-density lipo 72.2 1.1E+02 0.0036 32.6 20.0 130 800-940 100-236 (318)
193 2vpj_A Kelch-like protein 12; 70.7 1E+02 0.0036 32.0 19.3 160 743-919 127-299 (301)
194 1dul_A Signal recognition part 70.7 4.6 0.00016 32.1 4.1 29 1059-1087 34-62 (69)
195 1xip_A Nucleoporin NUP159; bet 70.6 60 0.0021 35.8 15.0 101 491-612 90-191 (388)
196 2ecf_A Dipeptidyl peptidase IV 70.6 1.8E+02 0.0063 34.7 28.7 118 714-849 288-412 (741)
197 3fvz_A Peptidyl-glycine alpha- 70.1 1.2E+02 0.004 32.2 21.7 105 714-841 144-259 (329)
198 2oit_A Nucleoporin 214KDA; NH2 70.0 26 0.00088 39.5 12.3 122 707-848 87-221 (434)
199 2oit_A Nucleoporin 214KDA; NH2 68.3 1.5E+02 0.0052 32.9 18.8 70 489-566 150-222 (434)
200 3nol_A Glutamine cyclotransfer 68.1 78 0.0027 32.6 14.1 115 813-937 31-152 (262)
201 1rwi_B Serine/threonine-protei 67.6 1.1E+02 0.0037 30.9 22.5 230 302-567 25-264 (270)
202 2xn4_A Kelch-like protein 2; s 67.4 1.1E+02 0.0037 31.9 16.1 134 781-926 62-210 (302)
203 3ii7_A Kelch-like protein 7; p 65.6 1.3E+02 0.0045 31.2 18.1 165 744-926 70-253 (306)
204 3fvz_A Peptidyl-glycine alpha- 64.1 1.5E+02 0.0051 31.3 19.1 185 713-918 24-248 (329)
205 3ii7_A Kelch-like protein 7; p 63.0 1.2E+02 0.004 31.7 15.3 163 744-926 24-206 (306)
206 4asc_A Kelch repeat and BTB do 62.8 1.5E+02 0.0052 31.0 16.8 139 781-926 46-202 (315)
207 2xn4_A Kelch-like protein 2; s 61.6 1.5E+02 0.0053 30.6 20.3 168 743-927 76-258 (302)
208 3g4e_A Regucalcin; six bladed 60.2 1.6E+02 0.0055 30.4 27.6 155 715-901 15-185 (297)
209 3s94_A LRP-6, low-density lipo 60.1 2.6E+02 0.009 32.8 20.2 221 684-938 11-241 (619)
210 3hxj_A Pyrrolo-quinoline quino 59.8 1.7E+02 0.0057 30.5 16.3 161 744-937 117-281 (330)
211 2woz_A Kelch repeat and BTB do 59.8 1.5E+02 0.0053 31.0 15.6 104 723-840 109-214 (318)
212 3v65_B Low-density lipoprotein 59.4 2E+02 0.007 31.3 23.2 130 801-939 181-315 (386)
213 3v64_C Agrin; beta propeller, 59.1 1.9E+02 0.0066 30.9 24.6 129 800-936 137-271 (349)
214 4a2l_A BT_4663, two-component 57.2 3.3E+02 0.011 33.0 47.7 137 745-905 428-578 (795)
215 2z2n_A Virginiamycin B lyase; 57.2 1.7E+02 0.0058 29.7 33.7 267 301-611 15-294 (299)
216 1zgk_A Kelch-like ECH-associat 57.0 93 0.0032 32.6 13.1 168 744-926 39-221 (308)
217 1hq1_A Signal recognition part 56.1 9.7 0.00033 33.1 3.8 29 1059-1087 68-96 (105)
218 3hrp_A Uncharacterized protein 53.4 2.6E+02 0.0089 30.7 19.7 157 714-899 132-299 (409)
219 1zgk_A Kelch-like ECH-associat 53.1 1.3E+02 0.0043 31.5 13.4 136 781-926 122-268 (308)
220 2ece_A 462AA long hypothetical 52.1 2.9E+02 0.01 30.9 22.3 171 705-885 176-400 (462)
221 4gq1_A NUP37; propeller, trans 50.0 2.8E+02 0.0095 30.0 23.1 108 501-612 104-218 (393)
222 2jqe_A SRP54, signal recogniti 49.7 13 0.00046 33.1 3.8 29 1059-1087 77-105 (119)
223 1pjx_A Dfpase, DIISOPROPYLFLUO 47.6 2.5E+02 0.0085 28.8 19.5 108 714-840 19-135 (314)
224 2ghs_A AGR_C_1268P; regucalcin 47.1 2.7E+02 0.0094 29.1 29.8 187 707-919 84-279 (326)
225 1mda_H Methylamine dehydrogena 46.6 1.3E+02 0.0045 32.7 12.3 69 694-763 47-115 (368)
226 1qb2_A SRP54, human signal rec 46.4 14 0.00049 32.3 3.4 28 1060-1087 75-102 (109)
227 1k32_A Tricorn protease; prote 46.0 5.4E+02 0.018 32.2 22.9 232 682-937 24-323 (1045)
228 4a0p_A LRP6, LRP-6, low-densit 44.3 4.5E+02 0.015 30.8 25.2 219 684-937 8-234 (628)
229 1mfq_C SRP54, signal recogniti 43.2 17 0.00059 32.8 3.5 29 1059-1087 87-115 (129)
230 2uvk_A YJHT; unknown function, 42.6 1.8E+02 0.0063 30.9 12.9 89 745-840 32-126 (357)
231 1flg_A Protein (quinoprotein e 42.4 4.6E+02 0.016 30.4 18.7 86 718-813 251-358 (582)
232 1npe_A Nidogen, entactin; glyc 42.0 2.8E+02 0.0097 27.8 21.7 159 713-901 79-241 (267)
233 3dr2_A Exported gluconolactona 42.0 3.1E+02 0.011 28.3 22.2 97 715-838 47-147 (305)
234 3m0c_C LDL receptor, low-densi 41.5 5.5E+02 0.019 31.1 27.2 90 801-896 537-630 (791)
235 3dr2_A Exported gluconolactona 40.1 3.3E+02 0.011 28.0 19.7 123 799-937 167-303 (305)
236 2ghs_A AGR_C_1268P; regucalcin 38.9 3.6E+02 0.012 28.2 18.0 140 780-939 60-209 (326)
237 2p4o_A Hypothetical protein; p 38.2 2.8E+02 0.0096 28.7 13.2 69 870-938 74-145 (306)
238 2ecf_A Dipeptidyl peptidase IV 36.9 5.9E+02 0.02 30.0 32.5 204 684-905 165-422 (741)
239 4gq1_A NUP37; propeller, trans 35.9 4.4E+02 0.015 28.3 18.5 61 877-940 156-218 (393)
240 2dg1_A DRP35, lactonase; beta 33.9 4.1E+02 0.014 27.4 26.9 201 711-931 85-301 (333)
241 2hqs_A Protein TOLB; TOLB, PAL 32.7 5.1E+02 0.018 28.1 28.6 199 530-754 179-388 (415)
242 3v9f_A Two-component system se 31.7 7.4E+02 0.025 29.6 44.1 108 822-938 362-476 (781)
243 1ijq_A LDL receptor, low-densi 31.3 4.7E+02 0.016 27.2 26.7 155 713-897 77-237 (316)
244 2iwa_A Glutamine cyclotransfer 30.9 4.5E+02 0.015 26.9 17.1 116 812-937 8-132 (266)
245 2uvk_A YJHT; unknown function, 30.0 5.1E+02 0.017 27.2 16.2 122 801-925 168-321 (357)
246 3sre_A PON1, serum paraoxonase 28.4 5.8E+02 0.02 27.4 17.5 154 782-940 61-252 (355)
247 2ad6_A Methanol dehydrogenase 27.5 7.5E+02 0.026 28.4 29.6 87 717-813 239-338 (571)
248 2woz_A Kelch repeat and BTB do 27.2 5.3E+02 0.018 26.6 22.2 167 745-926 79-259 (318)
249 2fp8_A Strictosidine synthase; 27.0 5.4E+02 0.018 26.6 21.2 134 799-939 163-312 (322)
250 2z3z_A Dipeptidyl aminopeptida 26.9 8.1E+02 0.028 28.6 34.0 67 490-567 83-150 (706)
251 3qqz_A Putative uncharacterize 26.7 5.2E+02 0.018 26.2 21.7 190 527-730 24-241 (255)
252 2qe8_A Uncharacterized protein 26.2 5.8E+02 0.02 26.7 16.2 51 878-929 259-309 (343)
253 1n7d_A LDL receptor, low-densi 25.7 48 0.0016 40.0 4.6 129 799-936 473-610 (699)
254 1sfu_A 34L protein; protein/Z- 25.4 59 0.002 26.2 3.4 30 1057-1086 23-55 (75)
255 3v65_B Low-density lipoprotein 22.9 7.3E+02 0.025 26.6 24.4 87 800-896 224-316 (386)
256 3v9f_A Two-component system se 22.7 1E+03 0.035 28.3 47.2 108 781-905 417-531 (781)
257 1xn7_A Hypothetical protein YH 20.9 60 0.0021 26.4 2.8 29 1058-1086 14-42 (78)
258 3ott_A Two-component system se 20.6 1.1E+03 0.038 27.9 23.2 103 781-904 73-180 (758)
259 1pjx_A Dfpase, DIISOPROPYLFLUO 20.4 6.7E+02 0.023 25.3 23.4 202 713-939 71-298 (314)
260 2hz6_A Endoplasmic reticulum t 20.3 1E+02 0.0036 33.4 5.7 54 781-847 9-65 (369)
No 1
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=100.00 E-value=6.6e-176 Score=1676.82 Aligned_cols=1080 Identities=56% Similarity=0.954 Sum_probs=990.5
Q ss_pred ceEEEEEEeecCCceeEEEEEEecCCCcccEEEEcCCEEEEEEeCCCCeEEEEEEEeeeeEeEEeeeccCCCCccEEEEE
Q 001387 2 SIWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIATLELFRPHGEAQDFLFIA 81 (1088)
Q Consensus 2 ~~~~y~~t~~~~tav~~av~~~f~~~~~~~Lvv~k~~~le~y~~~~~~L~~~~~~~l~~~i~~i~~~r~~~~~~d~L~v~ 81 (1088)
|+|+|++|+|+||+|+||+.|||++++.++|||||+|+||||++++++|+++.++++||+|++++++|++++.+|+|+|+
T Consensus 19 m~~~Y~~t~~~pT~V~~av~g~F~~~~~~~Lvvak~~~Lel~~~~~~~L~~v~~~~l~G~I~~l~~~r~~g~~~D~L~v~ 98 (1158)
T 3ei3_A 19 MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFIL 98 (1158)
T ss_dssp CCCEEEEEEECCCSCCEEEEECSSCSSCCEEEEEETTEEEEEEEETTEEEEEEEEECSSCEEEEEEECCTTCSSCEEEEE
T ss_pred ccEEEEEEeeCCChhhEEEEEEcCCCCccEEEEecCCEEEEEEEcccceEEEEEEEcccEEEEEEEEcCCCCCceEEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCcCeEEEEEEeCCCC--cEEEEEeeeccCCCCccCCCCCeEEECCCCCEEEEEecCCeEEEEeCCCCCccccceecccC
Q 001387 82 TERYKFCVLQWDAESS--ELITRAMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLE 159 (1088)
Q Consensus 82 ~~~~~~~il~~~~~~~--~~~t~s~~~~~~~~~r~~~~~~~l~vdp~~r~~~~~~~~~~l~i~p~~~~~~~~~~~~i~l~ 159 (1088)
|+++++++++||++.+ +++|.++++++++.+|+..+|++++|||+|||+++++|++.+.|+|+++.+....+++++++
T Consensus 99 td~~~~~il~~d~~~~~~~~~t~~~~~~~~~~~r~~~~g~~l~vDP~gR~~~l~~~e~~~~v~pl~~~~~~l~~~~~~l~ 178 (1158)
T 3ei3_A 99 TAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLE 178 (1158)
T ss_dssp ETTCEEEEEEEEC-CCCCEEEEEEEEECCCSSCCBCTTCCEEEECTTSSEEEEECBTTEEEEEECCTTCTTCCCEEEECS
T ss_pred eCCceEEEEEEcCCCCceeEEEEeccccccCccccCCCCCEEEEcCCCCEEEEEeccCEEEEEEecCCcccccccccccc
Confidence 9999999999998744 56677788889888899999999999999999999999999999999875443467889999
Q ss_pred CceeEEEEeecCCCCcEEEEEEEecCCcceEEEEEEeccCCCeeeecccccccCCCCCEEEecCCCCCceEEEeCCeEEE
Q 001387 160 ELQVLDIKFLYGCAKPTIVVLYQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVY 239 (1088)
Q Consensus 160 ~~~i~d~~fl~~~~~p~laiL~~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~lp~~~~~liplp~~~~G~lv~~~~~i~y 239 (1088)
+.+|+||+||+||++|+||+||+|.. .+++.+|+++++++...+..|+..++|+++++|||+|.|.||+||+|+|.|+|
T Consensus 179 ~~~v~d~~fL~g~~~P~~A~Ly~d~~-~~~l~~y~ldl~~~~~~~~~w~~~~l~~~a~~LipVP~~~gGvlv~g~n~i~y 257 (1158)
T 3ei3_A 179 ELHVIDVKFLYGCQAPTICFVYQDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITY 257 (1158)
T ss_dssp CCCEEEEEECSSCSSCEEEEEEEETT-EEEEEEEEEETTTTEEEECSSCCEEECTTCCEEEECCTTTCCEEEECSSCEEE
T ss_pred cceEEEEEEecCCCCcEEEEEEECCC-CCEEEEEEEEcCCCeeeecccccccCCCCCCEEEECCCCCceEEEEECCEEEE
Confidence 99999999999999999999999875 47999999999986566667988899999999999999999999999999999
Q ss_pred EcCCceeeeec---CCceeeeeeEEecCCCEEEEEcCCcCeEEEEEEecCc-----EEeeEEEEEcCccccceEEEEecC
Q 001387 240 CSANAFKAIPI---RPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKE-----KVTGLKIELLGETSIASTISYLDN 311 (1088)
Q Consensus 240 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ll~~~~G~l~~l~l~~~~~-----~v~~~~i~~~~~~~~~s~l~~l~~ 311 (1088)
+++++...++. ++..++||+.++.++.++||++++|+||+|.+..|++ .|.++++++++++++|+||+++++
T Consensus 258 ~~~~~~~~~~~p~~~~~~i~~~~~~~~~~~~~LL~~~~G~l~~l~l~~d~~~~~~~~V~~l~i~~~~~~~~~ssl~~l~~ 337 (1158)
T 3ei3_A 258 HNGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDN 337 (1158)
T ss_dssp EETTEEEEECCGGGGGSCEEEEEECSTTSSEEEEEETTCEEEEEEEEEEC-----CEEEEEEEEEEEECSCCSEEEECST
T ss_pred EcCCCceEEeccccCCceEEEEEEEecCCCEEEEEeCCCCEEEEEEEEcCCccCceeEEEEEEEEcCCccCccEEEEECC
Confidence 99887544433 2357899998887788999999999999999999875 699999999999999999999999
Q ss_pred CeEEEeeecCCeEEEEEeeCCCCCCCcEEEEeeeccCCceeeeEEeccCCCCCceEEEEeeCCCCceEEEEecCCceeEE
Q 001387 312 AVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQ 391 (1088)
Q Consensus 312 ~~lf~gS~~gds~l~~~~~~~~~~~~~~~~~~~l~n~~Pi~D~~~~~~~~~~~~~l~~~sG~g~~g~L~~lr~gi~~~~~ 391 (1088)
|+||+||++|||+|+|+...++++.+|++++|+++|||||.||++++..++++++|++|||.|++|+|+++|+|++++++
T Consensus 338 g~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi~~~~~ 417 (1158)
T 3ei3_A 338 GVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEH 417 (1158)
T ss_dssp TEEEEECSSSCEEEEEECSSCCTTSCCEEEEEEECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEEESBCEEEE
T ss_pred CEEEEEEecCCcEEEEEecCCCCccceEEeEeeecCcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEEecCCCEEEE
Confidence 99999999999999999987766678899999999999999999999877788999999999999999999999999999
Q ss_pred EeeeCCCcceEEEeecCCCCCCccEEEEEecCceEEEEecCCCceeeeeecceeccccceeeeecCCCeEEEEecCcEEE
Q 001387 392 ASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRL 471 (1088)
Q Consensus 392 ~~~~l~~v~~iw~l~~~~~~~~~~~lilS~~~~T~vl~~~~~~~~~e~~~~~f~~~~~Ti~~~~~~~~~ivQVt~~~i~l 471 (1088)
++.++||++++|+++....+++|.||++|++++|+||+++++ +++|+++++|.++++||+|++++++.+||||+++||+
T Consensus 418 ~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T~Vl~i~~e-~veev~~~gf~~~~~TL~~~~l~~~~ivQVt~~~Irl 496 (1158)
T 3ei3_A 418 ASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGE-EVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRL 496 (1158)
T ss_dssp EEECCCSCCEEEEECCCSSCSSCCEEEEEETTEEEEEEEETT-EEEEECCTTCCSSSCEEEEEEETTTEEEEEESSCEEE
T ss_pred EeecCCCccEEEEEeecCCCCCCCEEEEECCCCeEEEEEeCC-cccccccccccCCCCcEEEEEcCCCeEEEEecCEEEE
Confidence 999999999999999766677899999999999999999664 7999999999999999999999999999999999999
Q ss_pred EecCCcceeeeeeCCCCCcEEEEEECCCEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEE
Q 001387 472 VSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAA 551 (1088)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~I~~a~~~~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~ 551 (1088)
++.+....+++|.+|.|.+|++|++++.+++++. +++++||+++++++.+..+.+++.+|+|+++.+.++++..+.+++
T Consensus 497 i~~~~~~~~~~w~~p~~~~I~~As~n~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~a 575 (1158)
T 3ei3_A 497 VSQEPKALVSEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCA 575 (1158)
T ss_dssp EESSSCCEEEEECCTTCCCCCEEEECSSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEE
T ss_pred EECCCCeEEEEEECCCCCEEEEEEeCCCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEE
Confidence 9987656899999999999999999999999995 889999999988898888899999999999988877666789999
Q ss_pred EEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecCcccee
Q 001387 552 VGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPIT 631 (1088)
Q Consensus 552 vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~ 631 (1088)
||+|.|++++||++++++.++.+.++.+..|+|++++.+++.++|++|++||.+++|.++..+|++.+.|++.+|++|++
T Consensus 576 Vg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~ 655 (1158)
T 3ei3_A 576 IGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTV 655 (1158)
T ss_dssp EEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCE
T ss_pred EEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceE
Confidence 99999999999999999999999998777999999999988999999999999999999998899999999999999999
Q ss_pred EEEEEeCCceEEEEecCCceEEEecCCcEEEeecccccceeeeccCCCCCCCeEEEEeCCeEEEEEEcCCCCeEEEEEeC
Q 001387 632 LRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPL 711 (1088)
Q Consensus 632 l~~~~~~~~~~v~~~~~~p~~i~~~~~~~~~~~l~~~~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~~~~~~i~l 711 (1088)
|.++...+..+||++|++||++|.+++++.|+|++..++.++|+|++++|+++++++++++|+|+++++.++|++|+|||
T Consensus 656 L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ipL 735 (1158)
T 3ei3_A 656 LRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPL 735 (1158)
T ss_dssp EEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEEEECSSCEEEEEECCSSSEEEEEEEC
T ss_pred EEEEeeCCceeEEEECCCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcEEEEcCCceEEEEecccCCeeEEEEeC
Confidence 99998777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCeEEEecCCCEEEEEEeecC---CC------------------------------------cCcceeEEEEEEeCC
Q 001387 712 GEHPRRICHQEQSRTFAICSLKNQ---SC------------------------------------AEESEMHFVRLLDDQ 752 (1088)
Q Consensus 712 ~~tp~~i~y~~~~~~~~v~~~~~~---~~------------------------------------~~~~~~s~l~lid~~ 752 (1088)
++||||++|||++++|+|++++.+ .+ +.+.+.++++++||.
T Consensus 736 ~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~ 815 (1158)
T 3ei3_A 736 YESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQH 815 (1158)
T ss_dssp SSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETT
T ss_pred CCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCC
Confidence 999999999999999999997642 10 112478999999999
Q ss_pred CceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEecccc
Q 001387 753 TFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFN 832 (1088)
Q Consensus 753 t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~ 832 (1088)
+|+++++++|+++|.++|++.|+|.+++++|++|||++..++|+.+++|||++|++.++||+++++++++|+|+|+++++
T Consensus 816 t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~ 895 (1158)
T 3ei3_A 816 TFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFN 895 (1158)
T ss_dssp TCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEET
T ss_pred CCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeC
Confidence 99999999999999999999999988778999999999988899999999999999999999999999999999999999
Q ss_pred CeEEEEECCEEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCce
Q 001387 833 GKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANW 912 (1088)
Q Consensus 833 g~Lv~~~g~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~ 912 (1088)
|+|++|+|++|++|+|.. ++.|...+.......++++++.||+|+|||+++|+++++|++++++|+++|||+.++|
T Consensus 896 g~Lla~ig~~l~vy~l~~----~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~ 971 (1158)
T 3ei3_A 896 GKLLASINSTVRLYEWTT----EKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNW 971 (1158)
T ss_dssp TEEEEEETTEEEEEEECT----TSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBC
T ss_pred CEEEEEcCCEEEEEECCC----CceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeeccccc
Confidence 999999999999999842 1223322221122347789999999999999999999999999999999999999999
Q ss_pred eEEEEEeeCceEEEEccCCcEEEEeeCCCCCCcccccceeEEEEEEcCCccceEEeeeeeecCC-CCCCCCccEEEEEcc
Q 001387 913 MSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLP-DSDVGQIPTVIFGTV 991 (1088)
Q Consensus 913 v~~~~~l~~~~~l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~-~~~~~~~~~~l~~t~ 991 (1088)
++++++|++++++++|++|||+++++++++.++.++++|+..++||+|+.||+|+++++.+..+ +......+.++|+|.
T Consensus 972 vta~~~ld~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~ 1051 (1158)
T 3ei3_A 972 MSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTV 1051 (1158)
T ss_dssp EEEEEEEETTEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEET
T ss_pred EEEEEEEccCcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEec
Confidence 9999999999999999999999999999888888889999999999999999999998876432 222335678999999
Q ss_pred cccEEEEEecChhHHHHHHHHHHHHHhccCCCCCCCcccccccccccccCCCCceEehHHHHHHhcCCHHHHHHHHHhcC
Q 001387 992 NGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN 1071 (1088)
Q Consensus 992 ~G~i~~l~~l~~~~~~~L~~lq~~l~~~~~~~~gl~~~~~R~~~~~~~~~~~~~~iDGdll~~fl~l~~~~q~~i~~~~~ 1071 (1088)
+|+||.+.|++++.|++|..||++|++..+++||++|++||+++++.+..+++|||||||||+|++|+.++|++||++++
T Consensus 1052 ~GsIg~l~pl~~~~~~~L~~Lq~~l~~~~~~~~gl~~~~~Rs~~~~~~~~~~~~~iDGdLle~fl~L~~~~q~~ia~~l~ 1131 (1158)
T 3ei3_A 1052 NGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQ 1131 (1158)
T ss_dssp TSCEEEEEEECHHHHHHHHHHHHHHHHHSCCTTSCCHHHHHSEECSSCEECCBSEEEHHHHHGGGGSCHHHHHHHCCCC-
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHHHHhhCCCCcCCCHHHhhCeecccccCCCCccCcHHHHHHHHcCCHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999876667889999999999999999999999999997
Q ss_pred ----------CCHHHHHHHHHHHhccC
Q 001387 1072 ----------VSVEELCKRVEELTRLH 1088 (1088)
Q Consensus 1072 ----------~~~~~i~~~l~~l~~~~ 1088 (1088)
++++||.|+||+|+|||
T Consensus 1132 ~~~~~~~~~~~t~~ei~k~~e~l~r~h 1158 (1158)
T 3ei3_A 1132 YDDGSGMKREATADDLIKVVEELTRIH 1158 (1158)
T ss_dssp -----------CCHHHHHHHHHHGGGC
T ss_pred ccccccccCCCCHHHHHHHHHHHhhcC
Confidence 59999999999999999
No 2
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.07 E-value=2.4e-05 Score=94.95 Aligned_cols=400 Identities=15% Similarity=0.134 Sum_probs=222.6
Q ss_pred CcEEEEecCCcceeeeeeCCCC--CcEEEEEECC---CEEEEEECCCeEEEEEEcCcEEEEEeec---cCCceeEEEEeC
Q 001387 467 GSVRLVSSTSRELRNEWKSPPG--YSVNVATANA---SQVLLATGGGHLVYLEIGDGILTEVKHA---QLEYEISCLDIN 538 (1088)
Q Consensus 467 ~~i~l~~~~~~~~~~~~~~~~~--~~I~~a~~~~---~~lvv~~~~~~l~~~~~~~~~l~~~~~~---~l~~~is~l~~~ 538 (1088)
..|++.+....+.+..+....+ ..|.+.+.++ ..++.+..++.+..+.+..++....-.. .....|.++++.
T Consensus 183 ~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 262 (615)
T 1pgu_A 183 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL 262 (615)
T ss_dssp TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES
T ss_pred CcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc
Confidence 4567777665444544432221 1688887653 4677777788888878766543332111 445678899885
Q ss_pred CCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCCC---cCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCC
Q 001387 539 PIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGE---IIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTG 615 (1088)
Q Consensus 539 ~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~---~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~ 615 (1088)
+ ..+++.+.. ++.+.+|++.+.+.+........ ..+.++.. .+..++++|..+|.+..|.+...
T Consensus 263 ---~----~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~g~i~~~d~~~~-- 329 (615)
T 1pgu_A 263 ---D----SQKFATVGA-DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA---TGNGRIISLSLDGTLNFYELGHD-- 329 (615)
T ss_dssp ---S----SSEEEEEET-TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE---EETTEEEEEETTSCEEEEETTEE--
T ss_pred ---C----CCEEEEEcC-CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe---CCCCeEEEEECCCCEEEEECCCC--
Confidence 1 567888877 99999999987665543333211 12223322 24568999999999999875421
Q ss_pred ccccceeeecCccceeEEEEEeCCceEEEEecCCceEEEecCCcEEEeec------ccccceeeeccCCCCCCCeEEEEe
Q 001387 616 ELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNV------NLKEVSHMCPFNSAAFPDSLAIAK 689 (1088)
Q Consensus 616 ~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~i~~~~~~~~~~~l------~~~~i~~~~~f~~~~~~~~l~~~~ 689 (1088)
.. .....--..++. .+.. .. ++..+ .++.+.+..+ +...+.+++- .. .+.++...
T Consensus 330 ~~--~~~~~~~~~~v~--~~~~-~~--l~~~~--------~dg~i~~w~~~~~~~~~~~~v~~~~~-~~---~~~l~~~~ 390 (615)
T 1pgu_A 330 EV--LKTISGHNKGIT--ALTV-NP--LISGS--------YDGRIMEWSSSSMHQDHSNLIVSLDN-SK---AQEYSSIS 390 (615)
T ss_dssp EE--EEEECCCSSCEE--EEET-TT--TEEEE--------TTSCEEETTTTEEECCCCSCEEEEEC-CS---TTCCEEEE
T ss_pred cE--EEEEeCCCCCEE--EEEe-cC--cEEEC--------CCCeEEEEEchhhcCcccCceEEEEE-CC---CcEEEEEe
Confidence 11 011111111221 1111 11 22222 2333332222 1123333222 11 12233332
Q ss_pred -CCeEEEEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceE
Q 001387 690 -EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYG 768 (1088)
Q Consensus 690 -~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v 768 (1088)
++.+++-.+. .-.....|+.++++|+.+.++.. .. ..+++++..+.+.+..+.. ...+
T Consensus 391 ~d~~i~~~~~~--------~~~~~~~~~~~~~s~~~~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~--~~~~ 449 (615)
T 1pgu_A 391 WDDTLKVNGIT--------KHEFGSQPKVASANNDGFTAVLT-ND----------DDLLILQSFTGDIIKSVRL--NSPG 449 (615)
T ss_dssp TTTEEEETTEE--------EEECSSCEEEEEECSSSEEEEEE-TT----------SEEEEEETTTCCEEEEEEC--SSCE
T ss_pred CCCCEEEEEcc--------cCcccCCceEEEEcCCCCEEEEe-CC----------CceEEEeccCCceeeeccc--CCCc
Confidence 4555543332 22233377888888887655444 22 4688888878888777663 3445
Q ss_pred eEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cCeEEEEE--CCEEEE
Q 001387 769 CSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAI--NQKIQL 845 (1088)
Q Consensus 769 ~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g~Lv~~~--g~~l~v 845 (1088)
.+++. . ..++++|+. ..|.+++|++..+++.........++|++++-- +|.++++. ...|++
T Consensus 450 ~~~~~---~---~~~l~~~~~---------~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~i 514 (615)
T 1pgu_A 450 SAVSL---S---QNYVAVGLE---------EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILL 514 (615)
T ss_dssp EEEEE---C---SSEEEEEET---------TTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eEEEE---c---CCEEEEeec---------CCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEE
Confidence 55543 2 567888762 157899998876555432223457789988754 45444433 367888
Q ss_pred EEeeeccCcccccccccc-cccceEEEEEEE----------eCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeE
Q 001387 846 YKWMLRDDGTRELQSECG-HHGHILALYVQT----------RGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMS 914 (1088)
Q Consensus 846 ~~~~~~~~~~~~L~~~~~-~~~~~~~~~l~~----------~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~ 914 (1088)
|+++ .+ +.+..... +...+..+.... .++++++|+.-..+.++.++.....+..+ ..+...++
T Consensus 515 w~~~---~~-~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~h~~~v~ 588 (615)
T 1pgu_A 515 YDLQ---SR-EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL--NAHKDGVN 588 (615)
T ss_dssp EETT---TT-EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET--TSSTTCEE
T ss_pred eeCC---CC-cceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhh--hcCccceE
Confidence 7753 22 22211111 222333344444 67799999998888876544322333332 33456788
Q ss_pred EEEEeeCceEEEEccCCcEEEEeeCC
Q 001387 915 AVEILDDDIYLGAENNFNLFTVRKNS 940 (1088)
Q Consensus 915 ~~~~l~~~~~l~~D~~gnl~~l~~~~ 940 (1088)
++.|..++.++.+..+|.+.+++.+.
T Consensus 589 ~l~~s~~~~l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 589 NLLWETPSTLVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEEEETTEEEEEETTSCEEEEEEC-
T ss_pred EEEEcCCCCeEEecCCceEEEEeeec
Confidence 89998877777788899999998753
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.76 E-value=0.00017 Score=95.75 Aligned_cols=592 Identities=14% Similarity=0.136 Sum_probs=289.2
Q ss_pred ceEEEEecCC-eEEEeeecCCeEEEEEeeCCCCCCCcEEEEeeec-cCCceeeeEEeccCCCCCceEEEEeeCCCCceEE
Q 001387 303 ASTISYLDNA-VVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYV-NLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLR 380 (1088)
Q Consensus 303 ~s~l~~l~~~-~lf~gS~~gds~l~~~~~~~~~~~~~~~~~~~l~-n~~Pi~D~~~~~~~~~~~~~l~~~sG~g~~g~L~ 380 (1088)
..++..-.++ +++.|+..|.=.++.+... . .+.++. .-++|..+++.+. .+.++++| .+|.++
T Consensus 618 v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~-----~---~~~~~~~h~~~v~~~~~s~~-----~~~l~s~~--~d~~v~ 682 (1249)
T 3sfz_A 618 VYHACFSQDGQRIASCGADKTLQVFKAETG-----E---KLLDIKAHEDEVLCCAFSSD-----DSYIATCS--ADKKVK 682 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTC-----C---EEEEECCCSSCEEEEEECTT-----SSEEEEEE--TTSEEE
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCCC-----C---EEEEeccCCCCEEEEEEecC-----CCEEEEEe--CCCeEE
Confidence 3455554444 5666765554444444321 1 233333 4578888887542 33444443 457787
Q ss_pred EEecCCceeEEEeeeCCCcceEEEeecCCCCCCccEEEEEecCce-EEEEecCCCceeeeeecceeccccceeeeec-CC
Q 001387 381 IVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISET-RILAMNLEDELEETEIEGFCSQTQTLFCHDA-IY 458 (1088)
Q Consensus 381 ~lr~gi~~~~~~~~~l~~v~~iw~l~~~~~~~~~~~lilS~~~~T-~vl~~~~~~~~~e~~~~~f~~~~~Ti~~~~~-~~ 458 (1088)
+..-.-+ +.+..+.- .-..++.+..... ....+++.+..+.+ .++.+.....+... .+ ....+.+..+ .+
T Consensus 683 vwd~~~~-~~~~~~~~-~~~~v~~~~~~~~-~~~~~l~sg~~d~~v~vwd~~~~~~~~~~--~~---h~~~v~~~~~sp~ 754 (1249)
T 3sfz_A 683 IWDSATG-KLVHTYDE-HSEQVNCCHFTNK-SNHLLLATGSNDFFLKLWDLNQKECRNTM--FG---HTNSVNHCRFSPD 754 (1249)
T ss_dssp EEETTTC-CEEEEEEC-CSSCEEEEEECSS-SSCCEEEEEETTSCEEEEETTSSSEEEEE--CC---CSSCEEEEEECSS
T ss_pred EEECCCC-ceEEEEcC-CCCcEEEEEEecC-CCceEEEEEeCCCeEEEEECCCcchhhee--cC---CCCCEEEEEEecC
Confidence 7654321 22222221 1224555554321 12334554444444 45554433211111 11 0111211111 12
Q ss_pred C-eEEEEec-CcEEEEecCCcceeeeeeCC------------CCCcEEEEEEC--CCEEEEEECCCeEEEEEEcCcEEEE
Q 001387 459 N-QLVQVTS-GSVRLVSSTSRELRNEWKSP------------PGYSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTE 522 (1088)
Q Consensus 459 ~-~ivQVt~-~~i~l~~~~~~~~~~~~~~~------------~~~~I~~a~~~--~~~lvv~~~~~~l~~~~~~~~~l~~ 522 (1088)
+ .++=.+. ..|++.+..+......+..+ ....+.+++.+ +..++++. ++.+..+....+....
T Consensus 755 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~ 833 (1249)
T 3sfz_A 755 DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLA 833 (1249)
T ss_dssp TTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEE
T ss_pred CCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCcee
Confidence 2 3333332 34666665432222222210 01123444433 44555554 5677776766544332
Q ss_pred EeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCC
Q 001387 523 VKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGD 602 (1088)
Q Consensus 523 ~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~ 602 (1088)
.....-...+.++++.+ ....+++|.. ++.+.+|++.+...+.... .....+.++.+.+ +..+++.+..|
T Consensus 834 ~~~~~~~~~v~~~~~sp------~~~~l~~~~~-dg~v~vwd~~~~~~~~~~~-~h~~~v~~v~~sp--dg~~l~s~s~d 903 (1249)
T 3sfz_A 834 EIHTGHHSTIQYCDFSP------YDHLAVIALS-QYCVELWNIDSRLKVADCR-GHLSWVHGVMFSP--DGSSFLTASDD 903 (1249)
T ss_dssp EEECSSSSCCCEEEECS------STTEEEEECS-SSCEEEEETTTTEEEEEEC-CCSSCEEEEEECT--TSSEEEEEETT
T ss_pred EEcCCCCCceEEEEEcC------CCCEEEEEeC-CCeEEEEEcCCCceeeecC-CCccceEEEEECC--CCCEEEEEeCC
Confidence 22223456788898865 3567888877 9999999998654433211 1112345554443 45678999999
Q ss_pred CcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEecC-CceEEE-ecCCcEEEeecccccceeeeccCCCC
Q 001387 603 GHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASD-RPTVIY-SSNKKLLYSNVNLKEVSHMCPFNSAA 680 (1088)
Q Consensus 603 G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~-~p~~i~-~~~~~~~~~~l~~~~i~~~~~f~~~~ 680 (1088)
|.+..|+......... ... ..+.... + ......+...+. +...+. ...+...+.+ ...+.++ .|+.
T Consensus 904 g~v~vw~~~~~~~~~~----~~~-~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~-~~sp-- 971 (1249)
T 3sfz_A 904 QTIRVWETKKVCKNSA----IVL-KQEIDVV-F-QENETMVLAVDNIRGLQLIAGKTGQIDYLP--EAQVSCC-CLSP-- 971 (1249)
T ss_dssp SCEEEEEHHHHHSCCS----SSE-EEEEEEE-E-ETTEEEEEEEESSSSEEEEEESSCCEEEEC--CSCEEEE-EECT--
T ss_pred CeEEEEEccccceeee----ecc-cceeeEE-E-cCCCcEEEEecCCcceEEEecCcceEEEcc--cCcEEEE-EEcC--
Confidence 9999988653110000 000 0011110 1 112222222222 122222 1223332221 1222222 2221
Q ss_pred CCCeEEEEe-CCeEEEEEEcCCCCeEEEEEe-CCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEE
Q 001387 681 FPDSLAIAK-EGELTIGTIDDIQKLHIRSIP-LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIS 758 (1088)
Q Consensus 681 ~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~-l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~ 758 (1088)
..+.++..+ ++.+.+..+...... ..+. -...++.++++|+.+.++.++.+ +.+++.|..+.+.+.
T Consensus 972 ~g~~l~~g~~~g~i~i~d~~~~~~~--~~~~~h~~~v~~l~~s~dg~~l~s~~~d----------g~i~vwd~~~~~~~~ 1039 (1249)
T 3sfz_A 972 HLEYVAFGDEDGAIKIIELPNNRVF--SSGVGHKKAVRHIQFTADGKTLISSSED----------SVIQVWNWQTGDYVF 1039 (1249)
T ss_dssp TSSEEEEEETTSCCEEEETTTTSCE--EECCCCSSCCCCEEECSSSSCEEEECSS----------SBEEEEETTTTEEEC
T ss_pred CCCEEEEEcCCCCEEEEEcCCCcee--eecccCCCceEEEEECCCCCEEEEEcCC----------CEEEEEECCCCceEE
Confidence 123444443 678888887765422 2222 23457789999988877766433 468999988876652
Q ss_pred EEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cCe-EE
Q 001387 759 TYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGK-LL 836 (1088)
Q Consensus 759 ~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g~-Lv 836 (1088)
.....+.+.++. +.. ...++.|+ ..|.+.+|++..+++.... ....++|++++-- +|. |+
T Consensus 1040 --~~~~~~~v~~~~---~~~--~~~l~~~~----------~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~ 1101 (1249)
T 3sfz_A 1040 --LQAHQETVKDFR---LLQ--DSRLLSWS----------FDGTVKVWNVITGRIERDF-TCHQGTVLSCAISSDATKFS 1101 (1249)
T ss_dssp --CBCCSSCEEEEE---ECS--SSEEEEEE----------SSSEEEEEETTTTCCCEEE-ECCSSCCCCEEECSSSSSCE
T ss_pred --EecCCCcEEEEE---EcC--CCcEEEEE----------CCCcEEEEECCCCceeEEE-cccCCcEEEEEECCCCCEEE
Confidence 223334455443 332 33455554 3478999998765533222 2357788887754 343 44
Q ss_pred EE-ECCEEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEE-E-------ecc
Q 001387 837 AA-INQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEE-R-------ARD 907 (1088)
Q Consensus 837 ~~-~g~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~-~-------~~D 907 (1088)
++ ..+++++|+++ .+ ..+.....+...+..+..+..+.++++|+.-..+.++... ..+... + ...
T Consensus 1102 s~s~d~~v~iwd~~---~~-~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~ 1175 (1249)
T 3sfz_A 1102 STSADKTAKIWSFD---LL-SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVS--DGQLLHSCAPISVEEGTA 1175 (1249)
T ss_dssp EECCSSCCCEECSS---SS-SCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESS--SSCCCCCCCCCC------
T ss_pred EEcCCCcEEEEECC---Cc-ceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECC--CCceEEEecccccccccc
Confidence 33 33677887753 12 1121111222223334444457799999988888775443 222211 1 012
Q ss_pred CCCceeEEEEEeeCceE-EEEccCCcEEEEeeCCCCCCcccccceeEEEEEE-cCCccceEEeeeeeecCCCCCCCCccE
Q 001387 908 YNANWMSAVEILDDDIY-LGAENNFNLFTVRKNSEGATDEERGRLEVVGEYH-LGEFVNRFRHGSLVMRLPDSDVGQIPT 985 (1088)
Q Consensus 908 ~~~~~v~~~~~l~~~~~-l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~ 985 (1088)
.+..+++++.|-.++.+ +.++ |.+.+++..... .+ ..+. .+..|+++.- ..+...
T Consensus 1176 ~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~-------~~---~~~~~~~~~i~~~~~-----------s~dg~~ 1232 (1249)
T 3sfz_A 1176 THGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGD-------SS---QTFYTNGTNLKKIHV-----------SPDFRT 1232 (1249)
T ss_dssp -CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCB-------CC---CCCCCSSCCCCCCEE-----------CSSSCC
T ss_pred ccCceEEEEEECCCCCEEEECC--CeEEEEECCCCc-------ee---eeeeccCCcccEEEE-----------CCCCCE
Confidence 34556788888777654 4554 888888765321 11 1111 1334444321 123457
Q ss_pred EEEEcccccEEEEE
Q 001387 986 VIFGTVNGVIGVIA 999 (1088)
Q Consensus 986 ~l~~t~~G~i~~l~ 999 (1088)
++.++.+|.+..+.
T Consensus 1233 l~~~~~dg~v~vw~ 1246 (1249)
T 3sfz_A 1233 YVTVDNLGILYILQ 1246 (1249)
T ss_dssp EEEECTTCCEEEEC
T ss_pred EEEecCCcEEEEEe
Confidence 88899999998764
No 4
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=98.75 E-value=0.00062 Score=82.33 Aligned_cols=461 Identities=10% Similarity=0.038 Sum_probs=230.8
Q ss_pred cCcEEEEecCCc----ceeeeeeCCCCCc-EEEEEECC----CEEEEEECCCeEEEEEEcCc------EEEEEeec-cCC
Q 001387 466 SGSVRLVSSTSR----ELRNEWKSPPGYS-VNVATANA----SQVLLATGGGHLVYLEIGDG------ILTEVKHA-QLE 529 (1088)
Q Consensus 466 ~~~i~l~~~~~~----~~~~~~~~~~~~~-I~~a~~~~----~~lvv~~~~~~l~~~~~~~~------~l~~~~~~-~l~ 529 (1088)
...|++++.++. +....... .... |.+.+.++ ..++.+..++.+....+..+ +....... ...
T Consensus 38 ~~~v~v~~~~~~~~~~~~~~~~~~-h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~ 116 (615)
T 1pgu_A 38 GKSAFVRCLDDGDSKVPPVVQFTG-HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA 116 (615)
T ss_dssp TTEEEEEECCSSCCSSCSEEEECT-TTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCS
T ss_pred CCeEEEEECCCCCCccccceEEec-CCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhccc
Confidence 445666666543 34444433 3346 88888655 56777777888888777533 22222222 245
Q ss_pred ceeEEEEeCCCCCCCCCccEEEEEEecC----CEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcE
Q 001387 530 YEISCLDINPIGENPSYSQIAAVGMWTD----ISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHL 605 (1088)
Q Consensus 530 ~~is~l~~~~~~~~~~~~~~~~vg~w~~----~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l 605 (1088)
..|.++++.+ .+.+++++.. + +.+.+|+... .+... ........++.+.+ .++..++.|..||.+
T Consensus 117 ~~v~~~~~s~------~~~~l~~~~~-~~~~~~~v~~~d~~~--~~~~~-~~~~~~v~~~~~~~-~~~~~l~~~~~d~~v 185 (615)
T 1pgu_A 117 GPISDISWDF------EGRRLCVVGE-GRDNFGVFISWDSGN--SLGEV-SGHSQRINACHLKQ-SRPMRSMTVGDDGSV 185 (615)
T ss_dssp SCEEEEEECT------TSSEEEEEEC-CSSCSEEEEETTTCC--EEEEC-CSCSSCEEEEEECS-SSSCEEEEEETTTEE
T ss_pred ccEEEEEEeC------CCCEEEEecc-CCCCccEEEEEECCC--cceee-ecCCccEEEEEECC-CCCcEEEEEeCCCcE
Confidence 6789999975 2567777766 4 5777776332 22111 11112334444432 123378889999999
Q ss_pred EEEEEecCCCccccceeeecCcc---ceeEEEEEeCCceEEEEecCCc-eEEEe-cCCcEEE-e-e---cccccceeeec
Q 001387 606 LNFLLNMKTGELTDRKKVSLGTQ---PITLRTFSSKNTTHVFAASDRP-TVIYS-SNKKLLY-S-N---VNLKEVSHMCP 675 (1088)
Q Consensus 606 ~~y~~~~~~~~l~~~~~~~lG~~---pv~l~~~~~~~~~~v~~~~~~p-~~i~~-~~~~~~~-~-~---l~~~~i~~~~~ 675 (1088)
..|.... +.. .+...-... ++.-..+..++...+++.+... ..++. ..++... . . -+...+.+++
T Consensus 186 ~vwd~~~--~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~- 260 (615)
T 1pgu_A 186 VFYQGPP--FKF--SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALS- 260 (615)
T ss_dssp EEEETTT--BEE--EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEE-
T ss_pred EEEeCCC--cce--eeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEE-
Confidence 9987432 211 111111122 4432233212133444444333 33332 1233221 1 1 1223333322
Q ss_pred cCCCCCCCeEEEEe-CCeEEEEEEcCCCCeEEEEEeCC-----CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEE
Q 001387 676 FNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPLG-----EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLL 749 (1088)
Q Consensus 676 f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l~-----~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~li 749 (1088)
|+ ..+.++... ++.+++-.+.... ..+++... ..+..+.+. ..+.+++++.+ ..++++
T Consensus 261 ~~---~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~----------g~i~~~ 324 (615)
T 1pgu_A 261 WL---DSQKFATVGADATIRVWDVTTSK--CVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLD----------GTLNFY 324 (615)
T ss_dssp ES---SSSEEEEEETTSEEEEEETTTTE--EEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETT----------SCEEEE
T ss_pred Ec---CCCEEEEEcCCCcEEEEECCCCc--EEEEEcCCCCcccCceeEEEeC-CCCeEEEEECC----------CCEEEE
Confidence 22 223444444 6778887776433 34455544 334445554 55555555433 346666
Q ss_pred eCCCceEEEEEECCCCceEeEEE------------------------------EEEEcCCCceEEEEEeeeeCCCCCCCc
Q 001387 750 DDQTFEFISTYPLDTFEYGCSIL------------------------------SCSFSDDSNVYYCVGTAYVLPEENEPT 799 (1088)
Q Consensus 750 d~~t~~~i~~~~~~~~E~v~si~------------------------------~~~~~~~~~~~i~VGT~~~~~~e~~~~ 799 (1088)
|..+++.+..+.-. ...+.+++ .+.+. ...+++.|+ .
T Consensus 325 d~~~~~~~~~~~~~-~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~--~~~~l~~~~----------~ 391 (615)
T 1pgu_A 325 ELGHDEVLKTISGH-NKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNS--KAQEYSSIS----------W 391 (615)
T ss_dssp ETTEEEEEEEECCC-SSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECC--STTCCEEEE----------T
T ss_pred ECCCCcEEEEEeCC-CCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEEC--CCcEEEEEe----------C
Confidence 66555544333211 11122211 11111 122333333 1
Q ss_pred ceEEEEEEEeC------------------------Ce--------EEEEEEEEecCceeEeccccCeEEEEE--CCEEEE
Q 001387 800 KGRILVFIVED------------------------GK--------LQLIAEKETKGAVYSLNAFNGKLLAAI--NQKIQL 845 (1088)
Q Consensus 800 ~Gri~v~~i~~------------------------~k--------l~~~~~~~~~g~v~ai~~~~g~Lv~~~--g~~l~v 845 (1088)
.|.+.+|++.. +. -+.+......+++++++.-+..|+++. +..+++
T Consensus 392 d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~ 471 (615)
T 1pgu_A 392 DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQV 471 (615)
T ss_dssp TTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEE
T ss_pred CCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEE
Confidence 23333333321 01 112333457788888886655566665 578898
Q ss_pred EEeeeccCcccccc--cccccccceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEee---
Q 001387 846 YKWMLRDDGTRELQ--SECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILD--- 920 (1088)
Q Consensus 846 ~~~~~~~~~~~~L~--~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~--- 920 (1088)
|++.. .++. ........+..+..+..++++++|+.-..+.+ |+....+....-...+...++++.+-.
T Consensus 472 ~~~~~-----~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~i--w~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 544 (615)
T 1pgu_A 472 FKLSD-----LEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILL--YDLQSREVKTSRWAFRTSKINAISWKPAEK 544 (615)
T ss_dssp EETTE-----EEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEE--EETTTTEEEECCSCCCSSCEEEEEECCCC-
T ss_pred EECCC-----ccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEE--eeCCCCcceeEeecCCCCceeEEEEcCccc
Confidence 88631 1221 11112222233333336779999998888776 455555554433333667888888876
Q ss_pred -------Cc-eEEEEccCCcEEEEeeCCCCCCcccccceeEEEEEEcCCccceEEeeeeeecCCCCCCCCccEEEEEccc
Q 001387 921 -------DD-IYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVN 992 (1088)
Q Consensus 921 -------~~-~~l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~~l~~t~~ 992 (1088)
++ .++.++.+|.+.++...... ++.....-| .+.|+++.-. .... ++.++.+
T Consensus 545 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-------~~~~~~~~h-~~~v~~l~~s-----------~~~~-l~s~~~d 604 (615)
T 1pgu_A 545 GANEEEIEEDLVATGSLDTNIFIYSVKRPM-------KIIKALNAH-KDGVNNLLWE-----------TPST-LVSSGAD 604 (615)
T ss_dssp -----CCSCCEEEEEETTSCEEEEESSCTT-------CCEEETTSS-TTCEEEEEEE-----------ETTE-EEEEETT
T ss_pred cccccccCCCEEEEEcCCCcEEEEECCCCc-------eechhhhcC-ccceEEEEEc-----------CCCC-eEEecCC
Confidence 54 46778889999999976421 111111112 3456555321 1234 8888999
Q ss_pred ccEEEEE
Q 001387 993 GVIGVIA 999 (1088)
Q Consensus 993 G~i~~l~ 999 (1088)
|.|....
T Consensus 605 ~~v~iw~ 611 (615)
T 1pgu_A 605 ACIKRWN 611 (615)
T ss_dssp SCEEEEE
T ss_pred ceEEEEe
Confidence 9987653
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=98.71 E-value=0.002 Score=78.19 Aligned_cols=417 Identities=13% Similarity=0.151 Sum_probs=221.0
Q ss_pred CcEEEEecCCcceeeeeeCCCCCcEEEEEEC--CCEEEEEECCCeEEEEEEcCcEEEE-Eeec-----cCCceeEEEEeC
Q 001387 467 GSVRLVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTE-VKHA-----QLEYEISCLDIN 538 (1088)
Q Consensus 467 ~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~~~~~l~~~~~~~~~l~~-~~~~-----~l~~~is~l~~~ 538 (1088)
..|++.+....+...... .....|.+++.+ +..++.+..++.+.+..+..++... .... .....|.++++.
T Consensus 170 ~~v~lwd~~~~~~~~~l~-~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s 248 (611)
T 1nr0_A 170 NTVAIFEGPPFKFKSTFG-EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248 (611)
T ss_dssp SCEEEEETTTBEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC
T ss_pred CeEEEEECCCCeEeeeec-cccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEEC
Confidence 346666654433333332 222457777765 4466666677888877765544322 2111 234678999997
Q ss_pred CCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccc
Q 001387 539 PIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELT 618 (1088)
Q Consensus 539 ~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~ 618 (1088)
| .+.+++.|.. |+++++|++.+.+.+...............+. . +...++.+..||.+..+... .+..
T Consensus 249 p------dg~~l~s~s~-D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~l~s~s~d~~i~~~~~~--~~~~- 316 (611)
T 1nr0_A 249 P------DGTKIASASA-DKTIKIWNVATLKVEKTIPVGTRIEDQQLGII-W-TKQALVSISANGFINFVNPE--LGSI- 316 (611)
T ss_dssp T------TSSEEEEEET-TSEEEEEETTTTEEEEEEECCSSGGGCEEEEE-E-CSSCEEEEETTCCEEEEETT--TTEE-
T ss_pred C------CCCEEEEEeC-CCeEEEEeCCCCceeeeecCCCCccceeEEEE-E-cCCEEEEEeCCCcEEEEeCC--CCCc-
Confidence 5 2567777777 99999999987655433222211111111111 2 34668888899998877533 2211
Q ss_pred cceeeecCc-cceeEEEEEeCCceEEEEecCCceEEEec--CCcEEEe--ecccccceeeeccCCCCCCCeEEEEe-CCe
Q 001387 619 DRKKVSLGT-QPITLRTFSSKNTTHVFAASDRPTVIYSS--NKKLLYS--NVNLKEVSHMCPFNSAAFPDSLAIAK-EGE 692 (1088)
Q Consensus 619 ~~~~~~lG~-~pv~l~~~~~~~~~~v~~~~~~p~~i~~~--~~~~~~~--~l~~~~i~~~~~f~~~~~~~~l~~~~-~~~ 692 (1088)
.....|- .++.-..+. .+...++..+..-.+..++ .+..... ..+...+.+++ |.. ...++... ++.
T Consensus 317 --~~~~~gh~~~v~~l~~s-pdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~-~s~---~~~l~s~s~d~~ 389 (611)
T 1nr0_A 317 --DQVRYGHNKAITALSSS-ADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK-TTS---KGDLFTVSWDDH 389 (611)
T ss_dssp --EEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEE-ECT---TSCEEEEETTTE
T ss_pred --ceEEcCCCCCEEEEEEe-CCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEE-ECC---CCcEEEEEcCCc
Confidence 1111121 233222221 1222333333222222221 1111100 00111222221 211 11233333 666
Q ss_pred EEEEEEcCCC--CeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeE
Q 001387 693 LTIGTIDDIQ--KLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCS 770 (1088)
Q Consensus 693 l~i~~l~~~~--~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~s 770 (1088)
+++-.+.... ........+...|..++++|+.+.+++++. ..+++++.. + +.... ....+.|
T Consensus 390 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~-----------~~v~~~~~~--~-~~~~~--~~~~v~~ 453 (611)
T 1nr0_A 390 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY-----------KHIAIYSHG--K-LTEVP--ISYNSSC 453 (611)
T ss_dssp EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEES-----------SEEEEEETT--E-EEEEE--CSSCEEE
T ss_pred eEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeC-----------ceEEEEeCC--c-eeeee--cCCCceE
Confidence 6666554321 001112345567778888888766666532 246777632 3 33333 2333444
Q ss_pred EEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cCeEEEEE--CCEEEEEE
Q 001387 771 ILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAI--NQKIQLYK 847 (1088)
Q Consensus 771 i~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g~Lv~~~--g~~l~v~~ 847 (1088)
+ .+.. ..+++++|+ ..|.|++|++..++++.+....+.++|++++-- +|+++++. ..++++|+
T Consensus 454 v---a~sp-dg~~lasgs----------~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~ 519 (611)
T 1nr0_A 454 V---ALSN-DKQFVAVGG----------QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYS 519 (611)
T ss_dssp E---EECT-TSCEEEEEE----------TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred E---EEeC-CCCEEEEeC----------CCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEE
Confidence 4 3443 356888886 347999999998777666666788999999854 45555443 36788877
Q ss_pred eeeccCcccccccc---cccccceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCC-CceeEEEEEeeCce
Q 001387 848 WMLRDDGTRELQSE---CGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYN-ANWMSAVEILDDDI 923 (1088)
Q Consensus 848 ~~~~~~~~~~L~~~---~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~-~~~v~~~~~l~~~~ 923 (1088)
.. +.+ ++... ..+...+..++.+..+.+|+.|..-+.+.++.++.....+... ...+ ...|+++.|..++.
T Consensus 520 ~~--~~~--~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~-~~~h~~~~v~~v~fs~d~~ 594 (611)
T 1nr0_A 520 VA--NNF--ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII-KGAHAMSSVNSVIWLNETT 594 (611)
T ss_dssp GG--GTT--EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEE-TTSSTTSCEEEEEEEETTE
T ss_pred cC--CCC--ceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchh-hccCcccCeeEEEEcCCCE
Confidence 52 112 22221 1122233344444457799999998888876543322222111 2234 56788999988888
Q ss_pred EEEEccCCcEEEEee
Q 001387 924 YLGAENNFNLFTVRK 938 (1088)
Q Consensus 924 ~l~~D~~gnl~~l~~ 938 (1088)
++.+..+|.+.+.+.
T Consensus 595 l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 595 IVSAGQDSNIKFWNV 609 (611)
T ss_dssp EEEEETTSCEEEEEC
T ss_pred EEEecCCCCEEEEec
Confidence 777888999998875
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.61 E-value=0.00076 Score=89.46 Aligned_cols=402 Identities=15% Similarity=0.091 Sum_probs=217.6
Q ss_pred CcEEEEEEC--CCEEEEEECCCeEEEEEEcCcE-EEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEEC
Q 001387 489 YSVNVATAN--ASQVLLATGGGHLVYLEIGDGI-LTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL 565 (1088)
Q Consensus 489 ~~I~~a~~~--~~~lvv~~~~~~l~~~~~~~~~-l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l 565 (1088)
..|.+.+.+ +..++.+..++.+.......++ +.... .-...|+|+++.+ .+.+++.|.. |+.+.+|++
T Consensus 616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~--~h~~~v~~~~~s~------~~~~l~s~~~-d~~v~vwd~ 686 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK--AHEDEVLCCAFSS------DDSYIATCSA-DKKVKIWDS 686 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECT------TSSEEEEEET-TSEEEEEET
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEec--cCCCCEEEEEEec------CCCEEEEEeC-CCeEEEEEC
Confidence 467777765 4566666677888777776543 22222 2356799999975 2568888877 999999999
Q ss_pred CCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEEE
Q 001387 566 PDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFA 645 (1088)
Q Consensus 566 ~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~ 645 (1088)
.+.+.+....- ......++.+..-++...+..|..||.+..|.+... ... ....--..++.-..+.. +...++.
T Consensus 687 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~--~~~--~~~~~h~~~v~~~~~sp-~~~~l~s 760 (1249)
T 3sfz_A 687 ATGKLVHTYDE-HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK--ECR--NTMFGHTNSVNHCRFSP-DDELLAS 760 (1249)
T ss_dssp TTCCEEEEEEC-CSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS--SEE--EEECCCSSCEEEEEECS-STTEEEE
T ss_pred CCCceEEEEcC-CCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc--chh--heecCCCCCEEEEEEec-CCCEEEE
Confidence 87665443211 112334444443334567888999999999876532 211 11111122333223321 2223333
Q ss_pred ecCCceEEEec--CCcE-EEeeccc------------ccceeeeccCCCCCCCeEEEEeCCeEEEEEEcCCCCeEEEEEe
Q 001387 646 ASDRPTVIYSS--NKKL-LYSNVNL------------KEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIP 710 (1088)
Q Consensus 646 ~~~~p~~i~~~--~~~~-~~~~l~~------------~~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~~~~~~i~ 710 (1088)
.+..-.+..++ .++. ....... ........|+ .-.+.++...++.+.+..+............
T Consensus 761 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~ 838 (1249)
T 3sfz_A 761 CSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWS--ADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG 838 (1249)
T ss_dssp EESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBC--TTSSEEEEEETTEEEEEETTTCCEEEEEECS
T ss_pred EECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEEC--CCCCEEEEEcCCcEEEEEecCCCceeEEcCC
Confidence 33322222221 1211 1000000 0000011111 1123466677888888877665433332223
Q ss_pred CCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeee
Q 001387 711 LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAY 790 (1088)
Q Consensus 711 l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~ 790 (1088)
-...+..++++|..+.+++++.+ +.+++.|..+.+.+..+.-. ...+.++ .+..+ ..+++.|+
T Consensus 839 ~~~~v~~~~~sp~~~~l~~~~~d----------g~v~vwd~~~~~~~~~~~~h-~~~v~~v---~~spd-g~~l~s~s-- 901 (1249)
T 3sfz_A 839 HHSTIQYCDFSPYDHLAVIALSQ----------YCVELWNIDSRLKVADCRGH-LSWVHGV---MFSPD-GSSFLTAS-- 901 (1249)
T ss_dssp SSSCCCEEEECSSTTEEEEECSS----------SCEEEEETTTTEEEEEECCC-SSCEEEE---EECTT-SSEEEEEE--
T ss_pred CCCceEEEEEcCCCCEEEEEeCC----------CeEEEEEcCCCceeeecCCC-ccceEEE---EECCC-CCEEEEEe--
Confidence 34678889999998887777543 46899998888776655422 2234444 34433 44566665
Q ss_pred eCCCCCCCcceEEEEEEEeC------------------------------CeEEEEE------EEEecCceeEeccc-cC
Q 001387 791 VLPEENEPTKGRILVFIVED------------------------------GKLQLIA------EKETKGAVYSLNAF-NG 833 (1088)
Q Consensus 791 ~~~~e~~~~~Gri~v~~i~~------------------------------~kl~~~~------~~~~~g~v~ai~~~-~g 833 (1088)
..|.+.+|++.+ ..+.... .....+++++++.- +|
T Consensus 902 --------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g 973 (1249)
T 3sfz_A 902 --------DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHL 973 (1249)
T ss_dssp --------TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTS
T ss_pred --------CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCC
Confidence 235666666431 0111111 01124456666543 23
Q ss_pred -eEEEEEC-CEEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCc
Q 001387 834 -KLLAAIN-QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNAN 911 (1088)
Q Consensus 834 -~Lv~~~g-~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~ 911 (1088)
+++++.. +.+.+|++. .+ +.+.....+...+..+..+..+++++.|..-..+.+ |+...++.... .....
T Consensus 974 ~~l~~g~~~g~i~i~d~~---~~-~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~v--wd~~~~~~~~~--~~~~~ 1045 (1249)
T 3sfz_A 974 EYVAFGDEDGAIKIIELP---NN-RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQV--WNWQTGDYVFL--QAHQE 1045 (1249)
T ss_dssp SEEEEEETTSCCEEEETT---TT-SCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEE--EETTTTEEECC--BCCSS
T ss_pred CEEEEEcCCCCEEEEEcC---CC-ceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEE--EECCCCceEEE--ecCCC
Confidence 4544433 577887752 12 112111122222333444445778888888777766 45555554432 24556
Q ss_pred eeEEEEEeeCceEEEEccCCcEEEEeeCC
Q 001387 912 WMSAVEILDDDIYLGAENNFNLFTVRKNS 940 (1088)
Q Consensus 912 ~v~~~~~l~~~~~l~~D~~gnl~~l~~~~ 940 (1088)
.++++.+..++.++.+..+|.+.++....
T Consensus 1046 ~v~~~~~~~~~~l~~~~~dg~v~vwd~~~ 1074 (1249)
T 3sfz_A 1046 TVKDFRLLQDSRLLSWSFDGTVKVWNVIT 1074 (1249)
T ss_dssp CEEEEEECSSSEEEEEESSSEEEEEETTT
T ss_pred cEEEEEEcCCCcEEEEECCCcEEEEECCC
Confidence 77788888888888888999999998653
No 7
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.56 E-value=0.00062 Score=79.29 Aligned_cols=329 Identities=12% Similarity=0.113 Sum_probs=183.1
Q ss_pred EEEEEECCCEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCc
Q 001387 491 VNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNL 570 (1088)
Q Consensus 491 I~~a~~~~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~ 570 (1088)
|.+.+.++..++.+..++.+...++.+++....- ......|.|+++.+ ...++.|.. ||.+.+|++.+.+.
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~-~~h~~~V~~l~~~~-------~~~l~s~s~-dg~i~vwd~~~~~~ 195 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKYAH-------GGILVSGST-DRTVRVWDIKKGCC 195 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECS-------TTEEEEEET-TSCEEEEETTTTEE
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEE-eCCCcCEEEEEEcC-------CCEEEEEeC-CCCEEEEECCCCcE
Confidence 5555567778887777888888887665533221 12456799999853 337777877 99999999986554
Q ss_pred eEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEe-cCC
Q 001387 571 ITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAA-SDR 649 (1088)
Q Consensus 571 ~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~-~~~ 649 (1088)
+.... .......++.+....+..+++.|..||.+..|.+......... . .-...+ .++.. ...
T Consensus 196 ~~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~--~~~~~~------------~~~~~~~~~ 259 (464)
T 3v7d_B 196 THVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH-G--EEHDYP------------LVFHTPEEN 259 (464)
T ss_dssp EEEEC-CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC---------CCSS------------EEESCGGGC
T ss_pred EEEEC-CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccc-c--ccCCcc------------eEeeccCCC
Confidence 43221 1122345555554445688999999999999887643210000 0 000001 01000 111
Q ss_pred ceEEEecCCcEEEeecccccceeeeccCCCCCCCeEEEEe-CCeEEEEEEcCCCCeEEEEEeC-CCccCeEEEecCCCEE
Q 001387 650 PTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPL-GEHPRRICHQEQSRTF 727 (1088)
Q Consensus 650 p~~i~~~~~~~~~~~l~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l-~~tp~~i~y~~~~~~~ 727 (1088)
++++....+ +...+.++.+ .++.++... ++.+++-.+.... ..+.+.- ...+..++++|+.+.+
T Consensus 260 ~~~~~~~~~-------~~~~v~~~~~-----~~~~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l 325 (464)
T 3v7d_B 260 PYFVGVLRG-------HMASVRTVSG-----HGNIVVSGSYDNTLIVWDVAQMK--CLYILSGHTDRIYSTIYDHERKRC 325 (464)
T ss_dssp TTEEEEECC-------CSSCEEEEEE-----ETTEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEETTTTEE
T ss_pred eEEEEEccC-------ccceEEEEcC-----CCCEEEEEeCCCeEEEEECCCCc--EEEEecCCCCCEEEEEEcCCCCEE
Confidence 111111110 1111222211 122333333 6667776665432 2333332 3456778899988887
Q ss_pred EEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEE
Q 001387 728 AICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFI 807 (1088)
Q Consensus 728 ~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~ 807 (1088)
+.++.+ +.|++.|..+++.+..+.-. ...+.++. +. ..+++.|+ ..|.|.+|+
T Consensus 326 ~sg~~d----------g~i~vwd~~~~~~~~~~~~h-~~~v~~~~---~~---~~~l~s~s----------~dg~v~vwd 378 (464)
T 3v7d_B 326 ISASMD----------TTIRIWDLENGELMYTLQGH-TALVGLLR---LS---DKFLVSAA----------ADGSIRGWD 378 (464)
T ss_dssp EEEETT----------SCEEEEETTTTEEEEEECCC-SSCEEEEE---EC---SSEEEEEE----------TTSEEEEEE
T ss_pred EEEeCC----------CcEEEEECCCCcEEEEEeCC-CCcEEEEE---Ec---CCEEEEEe----------CCCcEEEEE
Confidence 766543 46999999888887766432 23344443 33 46777776 347899999
Q ss_pred EeCCeEEEEEEEEecCcee--EeccccCeEEEEECCEEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEEEEec
Q 001387 808 VEDGKLQLIAEKETKGAVY--SLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDL 885 (1088)
Q Consensus 808 i~~~kl~~~~~~~~~g~v~--ai~~~~g~Lv~~~g~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~ 885 (1088)
+...+..... ....++. ++..-+..|+++.++.+++|++. .+ ++...........+.++...++.++++-.
T Consensus 379 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~---~g--~~~~~~~~~~~~~v~~v~~~~~~l~~~~~ 451 (464)
T 3v7d_B 379 ANDYSRKFSY--HHTNLSAITTFYVSDNILVSGSENQFNIYNLR---SG--KLVHANILKDADQIWSVNFKGKTLVAAVE 451 (464)
T ss_dssp TTTCCEEEEE--ECTTCCCEEEEEECSSEEEEEETTEEEEEETT---TC--CEEESCTTTTCSEEEEEEEETTEEEEEEE
T ss_pred CCCCceeeee--cCCCCccEEEEEeCCCEEEEecCCeEEEEECC---CC--cEEehhhccCCCcEEEEEecCCEEEEEEE
Confidence 8765433332 2333333 33333456777778899998863 22 23221111122345666667888887777
Q ss_pred cccEEEE
Q 001387 886 MKSISLL 892 (1088)
Q Consensus 886 ~~Sv~~~ 892 (1088)
.++..++
T Consensus 452 ~~g~~~i 458 (464)
T 3v7d_B 452 KDGQSFL 458 (464)
T ss_dssp ETTEEEE
T ss_pred eCCeEEE
Confidence 7776554
No 8
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=98.31 E-value=0.016 Score=69.25 Aligned_cols=546 Identities=14% Similarity=0.143 Sum_probs=264.0
Q ss_pred ccccceEEEEecCC-eEEEeeecCCeEEEEEeeCCCCCCCcEEEEeeecc-CCceeeeEEeccCCCCCceEEEEeeCCCC
Q 001387 299 ETSIASTISYLDNA-VVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVN-LGPIVDFCVVDLERQGQGQVVTCSGAYKD 376 (1088)
Q Consensus 299 ~~~~~s~l~~l~~~-~lf~gS~~gds~l~~~~~~~~~~~~~~~~~~~l~n-~~Pi~D~~~~~~~~~~~~~l~~~sG~g~~ 376 (1088)
.....++++.-.++ +|..||. |+.+.-|... +. .+.++.. -++|..+++.+. .++++++| .+
T Consensus 15 H~~~V~~~a~spdg~~las~~~--d~~v~iWd~~----~~---~~~~l~gh~~~V~~l~fspd-----g~~las~~--~d 78 (577)
T 2ymu_A 15 HSSSVRGVAFSPDGQTIASASD--DKTVKLWNRN----GQ---LLQTLTGHSSSVWGVAFSPD-----GQTIASAS--DD 78 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEET--TSEEEEECTT----SC---EEEEEECCSSCEEEEEECTT-----SSEEEEEE--TT
T ss_pred CCCcEEEEEECCCCCEEEEEeC--CCEEEEEECC----CC---EEEEEeCCCCCEEEEEECCC-----CCEEEEEe--CC
Confidence 33445566665555 4555653 4444444422 22 2334443 478988887542 34454443 46
Q ss_pred ceEEEEecCCceeEEEeeeCCCcceEEEeecCCCCCCccEEEEEecCceEEEEecCCCceeeeeecceeccccceeeeec
Q 001387 377 GSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDA 456 (1088)
Q Consensus 377 g~L~~lr~gi~~~~~~~~~l~~v~~iw~l~~~~~~~~~~~lilS~~~~T~vl~~~~~~~~~e~~~~~f~~~~~Ti~~~~~ 456 (1088)
|.+++... .-+.+..++-. -..++.+.... ...+|+....+.+..+--......... .+. ...+.....
T Consensus 79 ~~i~vWd~--~~~~~~~~~~~-~~~v~~~~~s~---d~~~l~~~~~d~~~~~~~~~~~~~~~~--~~~---~~~v~~~~~ 147 (577)
T 2ymu_A 79 KTVKLWNR--NGQLLQTLTGH-SSSVRGVAFSP---DGQTIASASDDKTVKLWNRNGQLLQTL--TGH---SSSVWGVAF 147 (577)
T ss_dssp SCEEEEET--TSCEEEEECCC-SSCEEEEEECT---TSSEEEEEETTSCEEEEETTCCEEEEE--CCC---SSCEEEEEE
T ss_pred CEEEEEEC--CCCEEEEEECC-CCCEEEEEECC---CCCEEEEEcCCCceeecccccceeeec--cCC---CCceeeeee
Confidence 78888763 22333333211 12445554432 245666665555544322111111110 110 111111111
Q ss_pred -CCC-eEEEEecC-cEEEEecCCcceeeeeeCCCCCcEEEEEEC--CCEEEEEECCCeEEEEEEcCcEEEEEeeccCCce
Q 001387 457 -IYN-QLVQVTSG-SVRLVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYE 531 (1088)
Q Consensus 457 -~~~-~ivQVt~~-~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~ 531 (1088)
.++ .+.-.... .+++..... ........ ....|...+.. +..++.+..++.+.+.+.+...+.... .....
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~--~~~~~ 223 (577)
T 2ymu_A 148 SPDGQTIASASDDKTVKLWNRNG-QLLQTLTG-HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT--GHSSS 223 (577)
T ss_dssp CTTSSCEEEEETTSEEEEECTTS-CEEEEEEC-CSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEE--CCSSC
T ss_pred ecCCccceecccccceeccccce-eeeeeccC-CCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEe--cCCCC
Confidence 111 22222222 223332221 22222222 22356666654 445666666677666543222222222 23467
Q ss_pred eEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEe
Q 001387 532 ISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLN 611 (1088)
Q Consensus 532 is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~ 611 (1088)
|.++++.+ ....++.+.. ++.+++|+... +.+... ......+.++.+. .+...|+.+..||.+..++..
T Consensus 224 v~~~~~s~------dg~~l~~~~~-d~~i~~w~~~~-~~~~~~-~~~~~~v~~v~~~--~d~~~l~~~~~d~~i~~w~~~ 292 (577)
T 2ymu_A 224 VRGVAFSP------DGQTIASASD-DKTVKLWNRNG-QLLQTL-TGHSSSVNGVAFR--PDGQTIASASDDKTVKLWNRN 292 (577)
T ss_dssp EEEEEECT------TSSCEEEEET-TSCEEEECTTS-CEEEEE-CCCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETT
T ss_pred EEEEEECC------CCCEEEEEeC-CCEEEEEeCCC-CEEEEE-ecCCCCEEEEEEc--CCCCEEEEEeCCCEEEEEeCC
Confidence 88998865 2456777776 99999998653 222111 1111233444433 245678889999998887632
Q ss_pred cCCCccccceeeecC-ccceeEEEEEeCCceEEEEecCCceEEEec-C-CcEEEeecccccceeeeccCCCCCCCeEEEE
Q 001387 612 MKTGELTDRKKVSLG-TQPITLRTFSSKNTTHVFAASDRPTVIYSS-N-KKLLYSNVNLKEVSHMCPFNSAAFPDSLAIA 688 (1088)
Q Consensus 612 ~~~~~l~~~~~~~lG-~~pv~l~~~~~~~~~~v~~~~~~p~~i~~~-~-~~~~~~~l~~~~i~~~~~f~~~~~~~~l~~~ 688 (1088)
+.+. +. ..| ..++.=..+. .+...++..+....+-.++ . ..+....-....+.+++ |+. ....++..
T Consensus 293 ---~~~~--~~-~~~h~~~v~~~~~~-~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~-~s~--~g~~l~~~ 362 (577)
T 2ymu_A 293 ---GQLL--QT-LTGHSSSVWGVAFS-PDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVA-FSP--DGQTIASA 362 (577)
T ss_dssp ---SCEE--EE-ECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEE-ECT--TSSEEEEE
T ss_pred ---CcEE--EE-EecCCCCeEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEE-ECC--CCCEEEEE
Confidence 2111 11 112 1233212221 1222333333322222221 1 22221111112232222 211 12234444
Q ss_pred e-CCeEEEEEEcCCCCeEEEEEe-CCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCc
Q 001387 689 K-EGELTIGTIDDIQKLHIRSIP-LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFE 766 (1088)
Q Consensus 689 ~-~~~l~i~~l~~~~~~~~~~i~-l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E 766 (1088)
. ++.+++-.... + ..+.+. -...++.++++|+.+.++.++.+ ..|++.|. +.+.+..+.-. ..
T Consensus 363 ~~dg~v~~~~~~~--~-~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d----------~~v~~~~~-~~~~~~~~~~~-~~ 427 (577)
T 2ymu_A 363 SDDKTVKLWNRNG--Q-LLQTLTGHSSSVRGVAFSPDGQTIASASDD----------KTVKLWNR-NGQLLQTLTGH-SS 427 (577)
T ss_dssp ETTSEEEEEETTC--C-EEEEEECCSSCEEEEEECTTSSCEEEEETT----------SEEEEECT-TCCEEEEEECC-SS
T ss_pred eCCCEEEEEcCCC--C-EEEEecCCCCCeEEEEECCCCCEEEEEeCC----------CEEEEEeC-CCCEEEEecCC-CC
Confidence 4 56666665321 2 233333 24567889999998887776543 46888885 55666554432 23
Q ss_pred eEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cCeEEEEE--CCEE
Q 001387 767 YGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAI--NQKI 843 (1088)
Q Consensus 767 ~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g~Lv~~~--g~~l 843 (1088)
.+.++ .+.. ...+++.|. ..|.+.+|+.....++.+ ....++|++++-- +++++++. +.+|
T Consensus 428 ~v~~~---~~s~-d~~~l~~~~----------~d~~v~~w~~~~~~~~~~--~~~~~~v~~~~~spd~~~las~~~d~~i 491 (577)
T 2ymu_A 428 SVWGV---AFSP-DDQTIASAS----------DDKTVKLWNRNGQLLQTL--TGHSSSVRGVAFSPDGQTIASASDDKTV 491 (577)
T ss_dssp CEEEE---EECT-TSSEEEEEE----------TTSEEEEEETTSCEEEEE--ECCSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred CeEEE---EECC-CCCEEEEEc----------CCCEEEEEECCCCEEEEE--cCCCCCEEEEEEcCCCCEEEEEeCCCEE
Confidence 34444 3443 345777665 247889998644333322 3467889888754 45555433 3577
Q ss_pred EEEEeeeccCcccccccccccccceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCce
Q 001387 844 QLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDI 923 (1088)
Q Consensus 844 ~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~ 923 (1088)
++|+. ++ +.+.....+...+..+..+..+.+++.|+.-..|.++ +.....+..+. .+...|+++.|..++.
T Consensus 492 ~iw~~----~~-~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lw--d~~~~~~~~~~--~h~~~v~~~~fs~dg~ 562 (577)
T 2ymu_A 492 KLWNR----NG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW--NRNGQLLQTLT--GHSSSVWGVAFSPDGQ 562 (577)
T ss_dssp EEEET----TS-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEE--CTTSCEEEEEE--CCSSCEEEEEECTTSS
T ss_pred EEEcC----CC-CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEE--eCCCCEEEEEc--CCCCCEEEEEEcCCCC
Confidence 87663 22 2222222222223333333446788888888877664 54444444433 3456788888876654
Q ss_pred -EEEEccCCcEEEE
Q 001387 924 -YLGAENNFNLFTV 936 (1088)
Q Consensus 924 -~l~~D~~gnl~~l 936 (1088)
++.+..+|.+.+.
T Consensus 563 ~l~s~~~D~~i~~W 576 (577)
T 2ymu_A 563 TIASASSDKTVKLW 576 (577)
T ss_dssp CEEEEETTSCEEEE
T ss_pred EEEEEeCCCEEEEe
Confidence 5667788888765
No 9
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=98.24 E-value=0.00034 Score=80.80 Aligned_cols=332 Identities=12% Similarity=0.147 Sum_probs=171.2
Q ss_pred CceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCC------CCceEEecCCCCcCceeEEeeeecCceEEEEEeCC
Q 001387 529 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD------LNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGD 602 (1088)
Q Consensus 529 ~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~------l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~ 602 (1088)
...|+|+++.+. ...+++.|.. |+.|++|++.+ .+..... .....+.++.+.+ +..+|+.|..|
T Consensus 63 ~~~V~~~~~s~~-----~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~--~~~~l~s~s~d 132 (437)
T 3gre_A 63 PNSITSSAVSPG-----ETPYLITGSD-QGVIKIWNLKEIIVGEVYSSSLTY--DCSSTVTQITMIP--NFDAFAVSSKD 132 (437)
T ss_dssp TSCEEEEEEECS-----SSCEEEEEET-TSEEEEEEHHHHHTTCCCSCSEEE--ECSSCEEEEEECT--TSSEEEEEETT
T ss_pred CCceEEEEECCC-----CCCEEEEecC-CceEEEeECcccccCcccceeeec--cCCCCEEEEEEeC--CCCEEEEEeCC
Confidence 467899998641 1468888877 99999999854 1111111 1122345555442 45789999999
Q ss_pred CcEEEEEEecC-CCccccceeeecCccceeEEEEEeCCceEEEEecCCceEEEecCCcEEEeec-ccccceeeeccCCCC
Q 001387 603 GHLLNFLLNMK-TGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNV-NLKEVSHMCPFNSAA 680 (1088)
Q Consensus 603 G~l~~y~~~~~-~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~i~~~~~~~~~~~l-~~~~i~~~~~f~~~~ 680 (1088)
|.+..|.+... ++... ......++ ..+.. .+- ....+.++..+.++
T Consensus 133 g~i~vwd~~~~~~~~~~----~~~~~~~i--~~~~~-------------------------~~~~~~~~~~~~~~~~~~- 180 (437)
T 3gre_A 133 GQIIVLKVNHYQQESEV----KFLNCECI--RKINL-------------------------KNFGKNEYAVRMRAFVNE- 180 (437)
T ss_dssp SEEEEEEEEEEEETTEE----EEEEEEEE--EEEEG-------------------------GGGSSCCCEEEEEEEECS-
T ss_pred CEEEEEEeccccCCcee----ecccccee--EEEEc-------------------------cCcccccCceEEEEEEcC-
Confidence 99999988532 11110 00000011 11100 000 00011111111000
Q ss_pred CCCeEEEEe-CCeEEEEEEcCCCCeEEEEEeC---CCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceE
Q 001387 681 FPDSLAIAK-EGELTIGTIDDIQKLHIRSIPL---GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEF 756 (1088)
Q Consensus 681 ~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l---~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~ 756 (1088)
-...++..+ ++.+++-.+.... ..+++.. ...+..++++|..+.++.++.+ +.|++.|..+.+.
T Consensus 181 ~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d----------g~i~iwd~~~~~~ 248 (437)
T 3gre_A 181 EKSLLVALTNLSRVIIFDIRTLE--RLQIIENSPRHGAVSSICIDEECCVLILGTTR----------GIIDIWDIRFNVL 248 (437)
T ss_dssp SCEEEEEEETTSEEEEEETTTCC--EEEEEECCGGGCCEEEEEECTTSCEEEEEETT----------SCEEEEETTTTEE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCe--eeEEEccCCCCCceEEEEECCCCCEEEEEcCC----------CeEEEEEcCCccE
Confidence 011233333 5666666665433 3334433 3567789999998877766543 4799999999999
Q ss_pred EEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEE-----------------
Q 001387 757 ISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEK----------------- 819 (1088)
Q Consensus 757 i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~----------------- 819 (1088)
+..+.+.....+.+++...--.....+++.|+ ..|.|.+|++..++.......
T Consensus 249 ~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 318 (437)
T 3gre_A 249 IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGS----------SKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGL 318 (437)
T ss_dssp EEEEBCTTCEEEEEEEECTTTCTTEEEEEEES----------TTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSG
T ss_pred EEEEecCCCCceEEEEeccccCCCccEEEEEc----------CCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccc
Confidence 88888777666766654311112355777775 458999999986654333321
Q ss_pred --------EecCceeEeccccCeEEEEEC--CEEEEEEeeeccCcccccccccccccc-eEEEEEEEeCCEEEEEecccc
Q 001387 820 --------ETKGAVYSLNAFNGKLLAAIN--QKIQLYKWMLRDDGTRELQSECGHHGH-ILALYVQTRGDFIVVGDLMKS 888 (1088)
Q Consensus 820 --------~~~g~v~ai~~~~g~Lv~~~g--~~l~v~~~~~~~~~~~~L~~~~~~~~~-~~~~~l~~~~~~I~vgD~~~S 888 (1088)
...++|++++--++.++++.+ ..|++|++. .+ +.+......... ..........+..++...++.
T Consensus 319 ~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (437)
T 3gre_A 319 EELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLN---EL-SSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKR 394 (437)
T ss_dssp GGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETT---CG-GGCEEEECC--CCCEEEEEEEETTEEEEEEECC-
T ss_pred ccceecccccCCceEEEEECCceEEEecCCCCeEEEEECC---Cc-ccceEEecccccCceEEEEEeecceEEEEEeccc
Confidence 145567777766676666555 678887753 12 111111110000 011112222232221111110
Q ss_pred EEEEEEeccCCeEEEEeccCCCceeEEEEEeeC--c-eEEEEccCCcEEEEe
Q 001387 889 ISLLIYKHEEGAIEERARDYNANWMSAVEILDD--D-IYLGAENNFNLFTVR 937 (1088)
Q Consensus 889 v~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~--~-~~l~~D~~gnl~~l~ 937 (1088)
.....+.. ...+...++++.+..+ + .++.+|.+|.|.+++
T Consensus 395 -------~~~~~~~~--~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 395 -------TSTHSVDD--SLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ---------------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred -------ccccccCc--ccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 01111111 1234566778877765 3 477899999999874
No 10
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=98.20 E-value=0.015 Score=70.43 Aligned_cols=107 Identities=9% Similarity=0.116 Sum_probs=64.2
Q ss_pred EEEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCce-EEEEccCCcEEEEeeCCCCCCcccccc
Q 001387 872 YVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDI-YLGAENNFNLFTVRKNSEGATDEERGR 950 (1088)
Q Consensus 872 ~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~-~l~~D~~gnl~~l~~~~~~~~~~~~~~ 950 (1088)
.++..+.++++|..-..+.++..+ ...+..+....++..++++.|-.++. ++.++.++.+.++...... +
T Consensus 455 a~spdg~~lasgs~D~~v~lwd~~--~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~-------~ 525 (611)
T 1nr0_A 455 ALSNDKQFVAVGGQDSKVHVYKLS--GASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF-------E 525 (611)
T ss_dssp EECTTSCEEEEEETTSEEEEEEEE--TTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT-------E
T ss_pred EEeCCCCEEEEeCCCCeEEEEEcc--CCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC-------c
Confidence 333457789999888888776543 44444333334566788888876654 5678889999999865311 1
Q ss_pred eeEE--EEEEcCCccceEEeeeeeecCCCCCCCCccEEEEEcccccEEEEE
Q 001387 951 LEVV--GEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIA 999 (1088)
Q Consensus 951 L~~~--~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~~l~~t~~G~i~~l~ 999 (1088)
+... ...| ...|+++. +. .....++.|+.||.|...-
T Consensus 526 ~~~~~~~~~H-~~~V~~v~---fs--------pdg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 526 LAHTNSWTFH-TAKVACVS---WS--------PDNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp ESCCCCCCCC-SSCEEEEE---EC--------TTSSEEEEEETTSCEEEEE
T ss_pred eeeeeeeeec-ccceeEEE---EC--------CCCCEEEEEECCCcEEEEE
Confidence 1111 0112 23444433 21 1345788889999987664
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=98.16 E-value=0.003 Score=79.35 Aligned_cols=268 Identities=11% Similarity=0.053 Sum_probs=144.5
Q ss_pred cEEEEEEC--CCEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCC
Q 001387 490 SVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD 567 (1088)
Q Consensus 490 ~I~~a~~~--~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~ 567 (1088)
.|.+.+.+ +..++++..++.+..+.+..++....- ......|+|+++.+ .+.++++|.. +|.+.+|++.+
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~-~~~~~~v~~~~~s~------~~~~l~~~~~-dg~i~vw~~~~ 86 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSI-QVTETPVRAGKFIA------RKNWIIVGSD-DFRIRVFNYNT 86 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEG------GGTEEEEEET-TSEEEEEETTT
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEE-ecCCCcEEEEEEeC------CCCEEEEEeC-CCeEEEEECCC
Confidence 56666655 446666667778877776665433221 12456789999865 3578888877 99999999987
Q ss_pred CCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEec
Q 001387 568 LNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAAS 647 (1088)
Q Consensus 568 l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~ 647 (1088)
.+.+....- ....+.++.+.+ +..+|+.|..||.+..|.+.... .. .+...-...++.-..+...+...+++.+
T Consensus 87 ~~~~~~~~~-~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~-~~--~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 160 (814)
T 3mkq_A 87 GEKVVDFEA-HPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNW-AL--EQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (814)
T ss_dssp CCEEEEEEC-CSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTS-EE--EEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred CcEEEEEec-CCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCc-eE--EEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence 665433211 112344554442 45678999999999999875421 11 1111111233432333211223333333
Q ss_pred C-CceEEEec-CCc--EEEeecccccceeeeccCCCCCCCeEEEEe-CCeEEEEEEcCCCCeEEEEEeC-CCccCeEEEe
Q 001387 648 D-RPTVIYSS-NKK--LLYSNVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPL-GEHPRRICHQ 721 (1088)
Q Consensus 648 ~-~p~~i~~~-~~~--~~~~~l~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l-~~tp~~i~y~ 721 (1088)
. ....++.- .+. ..+..-....+..++ |+.......++... ++.+.+-.+... -..+.+.- ...+..++++
T Consensus 161 ~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~l~~~~~dg~i~~~d~~~~--~~~~~~~~~~~~v~~~~~~ 237 (814)
T 3mkq_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVD-YYPLPDKPYMITASDDLTIKIWDYQTK--SCVATLEGHMSNVSFAVFH 237 (814)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCCCEEE-ECCSTTCCEEEEECTTSEEEEEETTTT--EEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEECCCCcceeEEecCCCCCEEEEE-EEECCCCCEEEEEeCCCEEEEEECCCC--cEEEEEcCCCCCEEEEEEc
Confidence 3 33333321 121 222111112232222 21111122344443 667777766543 23444443 3567789999
Q ss_pred cCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCc-eEEEEEe
Q 001387 722 EQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSN-VYYCVGT 788 (1088)
Q Consensus 722 ~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~-~~i~VGT 788 (1088)
|..+.+++++.+ +.|+++|..+++.+..+.... +.+.++. +..++. .++++|.
T Consensus 238 ~~~~~l~~~~~d----------g~v~vwd~~~~~~~~~~~~~~-~~v~~~~---~~~~~~~~~~~~~~ 291 (814)
T 3mkq_A 238 PTLPIIISGSED----------GTLKIWNSSTYKVEKTLNVGL-ERSWCIA---THPTGRKNYIASGF 291 (814)
T ss_dssp SSSSEEEEEETT----------SCEEEEETTTCSEEEEECCSS-SSEEEEE---ECTTCGGGEEEEEE
T ss_pred CCCCEEEEEeCC----------CeEEEEECCCCcEEEEeecCC-CcEEEEE---EccCCCceEEEEEe
Confidence 998877666533 469999999888887766543 3444443 333333 3566665
No 12
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=98.16 E-value=0.032 Score=66.64 Aligned_cols=550 Identities=13% Similarity=0.140 Sum_probs=266.1
Q ss_pred eecc-CCceeeeEEeccCCCCCceEEEEeeCCCCceEEEEecCCceeEEEeeeCCCcceEEEeecCCCCCCccEEEEEec
Q 001387 344 RYVN-LGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFI 422 (1088)
Q Consensus 344 ~l~n-~~Pi~D~~~~~~~~~~~~~l~~~sG~g~~g~L~~lr~gi~~~~~~~~~l~~v~~iw~l~~~~~~~~~~~lilS~~ 422 (1088)
.|.. -++|..+++-+. .++++.+ +.+|.+++... .-+.+..+.-. -..++.+.... ...+|+....
T Consensus 11 ~L~GH~~~V~~~a~spd-----g~~las~--~~d~~v~iWd~--~~~~~~~l~gh-~~~V~~l~fsp---dg~~las~~~ 77 (577)
T 2ymu_A 11 RLEAHSSSVRGVAFSPD-----GQTIASA--SDDKTVKLWNR--NGQLLQTLTGH-SSSVWGVAFSP---DGQTIASASD 77 (577)
T ss_dssp EECCCSSCEEEEEECTT-----SSCEEEE--ETTSEEEEECT--TSCEEEEEECC-SSCEEEEEECT---TSSEEEEEET
T ss_pred EECCCCCcEEEEEECCC-----CCEEEEE--eCCCEEEEEEC--CCCEEEEEeCC-CCCEEEEEECC---CCCEEEEEeC
Confidence 4443 478988887542 3444443 34678888763 33334333211 23567776542 3457776666
Q ss_pred Cce-EEEEecCCCceeeeeecceeccccceeeeec-CCC-eEEEEecC-cEEEEecCCcceeeeeeCCCCCcEEEEEEC-
Q 001387 423 SET-RILAMNLEDELEETEIEGFCSQTQTLFCHDA-IYN-QLVQVTSG-SVRLVSSTSRELRNEWKSPPGYSVNVATAN- 497 (1088)
Q Consensus 423 ~~T-~vl~~~~~~~~~e~~~~~f~~~~~Ti~~~~~-~~~-~ivQVt~~-~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~- 497 (1088)
+.+ +|+..... .+..+ .+. ...+.+-.+ .++ .++=...+ .+++.+... ...... ......+......
T Consensus 78 d~~i~vWd~~~~-~~~~~--~~~---~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~-~~~~~~-~~~~~~v~~~~~~~ 149 (577)
T 2ymu_A 78 DKTVKLWNRNGQ-LLQTL--TGH---SSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVWGVAFSP 149 (577)
T ss_dssp TSCEEEEETTSC-EEEEE--CCC---SSCEEEEEECTTSSEEEEEETTSCEEEEETTC-CEEEEE-CCCSSCEEEEEECT
T ss_pred CCEEEEEECCCC-EEEEE--ECC---CCCEEEEEECCCCCEEEEEcCCCceeeccccc-ceeeec-cCCCCceeeeeeec
Confidence 655 45543221 12111 111 111111111 122 22222222 233333222 111111 1122345554443
Q ss_pred -CCEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecC
Q 001387 498 -ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHL 576 (1088)
Q Consensus 498 -~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l 576 (1088)
...+.....++.......+...... .......+.++.+.+ ...+++.|.. ++.+++|+... +.+....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~------~~~~l~~~~~-d~~v~~w~~~~-~~~~~~~- 218 (577)
T 2ymu_A 150 DGQTIASASDDKTVKLWNRNGQLLQT--LTGHSSSVWGVAFSP------DGQTIASASD-DKTVKLWNRNG-QLLQTLT- 218 (577)
T ss_dssp TSSCEEEEETTSEEEEECTTSCEEEE--EECCSSCEEEEEECT------TSSCEEEEET-TSEEEEECTTS-CEEEEEE-
T ss_pred CCccceecccccceeccccceeeeee--ccCCCcceeeeeecC------CCCEEEEEcC-CCEEEEEeCCC-cEEEEEe-
Confidence 2333333334433332211111211 123346678888764 2467777777 99999998643 2221111
Q ss_pred CCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEec-CCceEEEe
Q 001387 577 GGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAAS-DRPTVIYS 655 (1088)
Q Consensus 577 ~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~-~~p~~i~~ 655 (1088)
.....+.++.+.+ +..+|..|..||.+..+... ++.. +...--..++.-..+. .+...++..+ +....+..
T Consensus 219 ~~~~~v~~~~~s~--dg~~l~~~~~d~~i~~w~~~---~~~~--~~~~~~~~~v~~v~~~-~d~~~l~~~~~d~~i~~w~ 290 (577)
T 2ymu_A 219 GHSSSVRGVAFSP--DGQTIASASDDKTVKLWNRN---GQLL--QTLTGHSSSVNGVAFR-PDGQTIASASDDKTVKLWN 290 (577)
T ss_dssp CCSSCEEEEEECT--TSSCEEEEETTSCEEEECTT---SCEE--EEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEE
T ss_pred cCCCCEEEEEECC--CCCEEEEEeCCCEEEEEeCC---CCEE--EEEecCCCCEEEEEEc-CCCCEEEEEeCCCEEEEEe
Confidence 1112344554432 44678889999998887522 2111 1111112233222232 1222333333 33333332
Q ss_pred cCCcE-EEeecccccceeeeccCCCCCCCeEEEEe-CCeEEEEEEcCCCCeEEEEEeC-CCccCeEEEecCCCEEEEEEe
Q 001387 656 SNKKL-LYSNVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPL-GEHPRRICHQEQSRTFAICSL 732 (1088)
Q Consensus 656 ~~~~~-~~~~l~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l-~~tp~~i~y~~~~~~~~v~~~ 732 (1088)
..++. ...+-+...+.+++ |+. -...++... ++.+++-.++.. ..+.+.- ...+..++++|+.+.++.++.
T Consensus 291 ~~~~~~~~~~~h~~~v~~~~-~~~--~~~~l~t~~~d~~i~~w~~~~~---~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 364 (577)
T 2ymu_A 291 RNGQLLQTLTGHSSSVWGVA-FSP--DGQTIASASDDKTVKLWNRNGQ---HLQTLTGHSSSVWGVAFSPDGQTIASASD 364 (577)
T ss_dssp TTSCEEEEECCCSSCEEEEE-ECT--TSSEEEEEETTSCEEEEETTSC---EEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCcEEEEEecCCCCeEEEE-ECC--CCCEEEEEeCCCeEEEEeCCCC---eeEEEeCCCCCEEEEEECCCCCEEEEEeC
Confidence 22322 11111122333322 211 112344443 566777665432 3344433 345677899999888776653
Q ss_pred ecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCe
Q 001387 733 KNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGK 812 (1088)
Q Consensus 733 ~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~k 812 (1088)
+ ..+++.|. +.+.+..+.-. ...+.++ .+..+ ..+++.|. ..|.|.+|+.....
T Consensus 365 d----------g~v~~~~~-~~~~~~~~~~~-~~~v~~~---~~s~d-g~~l~~~~----------~d~~v~~~~~~~~~ 418 (577)
T 2ymu_A 365 D----------KTVKLWNR-NGQLLQTLTGH-SSSVRGV---AFSPD-GQTIASAS----------DDKTVKLWNRNGQL 418 (577)
T ss_dssp T----------SEEEEEET-TCCEEEEEECC-SSCEEEE---EECTT-SSCEEEEE----------TTSEEEEECTTCCE
T ss_pred C----------CEEEEEcC-CCCEEEEecCC-CCCeEEE---EECCC-CCEEEEEe----------CCCEEEEEeCCCCE
Confidence 2 46888885 55666555432 2334554 34433 45677765 23688888753333
Q ss_pred EEEEEEEEecCceeEeccc-cCe-EEEEE-CCEEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEEEEeccccE
Q 001387 813 LQLIAEKETKGAVYSLNAF-NGK-LLAAI-NQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSI 889 (1088)
Q Consensus 813 l~~~~~~~~~g~v~ai~~~-~g~-Lv~~~-g~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv 889 (1088)
++.+ ....++|++++-- +++ |+.+. +.++++|+.+ + +.+.....+...+..+..+..+.+++.|..-..+
T Consensus 419 ~~~~--~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~----~-~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i 491 (577)
T 2ymu_A 419 LQTL--TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN----G-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 491 (577)
T ss_dssp EEEE--ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT----S-CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred EEEe--cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC----C-CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEE
Confidence 3222 3467889888744 344 44443 3578887631 2 2222222222233333444456788888877777
Q ss_pred EEEEEeccCCeEEEEeccCCCceeEEEEEeeCce-EEEEccCCcEEEEeeCCCCCCcccccceeEEEEEEcCCccceEEe
Q 001387 890 SLLIYKHEEGAIEERARDYNANWMSAVEILDDDI-YLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRH 968 (1088)
Q Consensus 890 ~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~-~l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~ 968 (1088)
.+ |+.+...+..+. .+...++++.|-.++. ++.++.+|.+.+++++. ..+ ....-| .+.|+++.-
T Consensus 492 ~i--w~~~~~~~~~~~--~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~--------~~~-~~~~~h-~~~v~~~~f 557 (577)
T 2ymu_A 492 KL--WNRNGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--------QLL-QTLTGH-SSSVWGVAF 557 (577)
T ss_dssp EE--EETTSCEEEEEE--CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS--------CEE-EEEECC-SSCEEEEEE
T ss_pred EE--EcCCCCEEEEEe--CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC--------CEE-EEEcCC-CCCEEEEEE
Confidence 66 455544444443 2445688888876654 66788899999997532 122 111112 355655432
Q ss_pred eeeeecCCCCCCCCccEEEEEcccccEEE
Q 001387 969 GSLVMRLPDSDVGQIPTVIFGTVNGVIGV 997 (1088)
Q Consensus 969 ~~l~~~~~~~~~~~~~~~l~~t~~G~i~~ 997 (1088)
. .+...++.++.||.|..
T Consensus 558 ---s--------~dg~~l~s~~~D~~i~~ 575 (577)
T 2ymu_A 558 ---S--------PDGQTIASASSDKTVKL 575 (577)
T ss_dssp ---C--------TTSSCEEEEETTSCEEE
T ss_pred ---c--------CCCCEEEEEeCCCEEEE
Confidence 1 13346777888998764
No 13
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=98.08 E-value=0.0031 Score=71.86 Aligned_cols=276 Identities=7% Similarity=0.065 Sum_probs=151.6
Q ss_pred EEECCCEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEE
Q 001387 494 ATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITK 573 (1088)
Q Consensus 494 a~~~~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~ 573 (1088)
.+.++..++.+..++.+...++..++........-...|+|+++.+ .+.++++|.+ +|.+.+|++.+.+.+..
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~------~~~~l~~~~~-dg~i~iwd~~~~~~~~~ 171 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSH------DGSFLSVGLG-NGLVDIYDVESQTKLRT 171 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECT------TSSEEEEEET-TSCEEEEETTTCCEEEE
T ss_pred EeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECC------CCCEEEEECC-CCeEEEEECcCCeEEEE
Confidence 3333343444445677777777666554443333467799999975 2578899988 99999999987655433
Q ss_pred ecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEecC-CceE
Q 001387 574 EHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASD-RPTV 652 (1088)
Q Consensus 574 ~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~-~p~~ 652 (1088)
.. .......++.. . ..+++.|..||.+..|.+......+ ....-...++.-..+. .+...+++.+. ....
T Consensus 172 ~~-~~~~~v~~~~~---~-~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~v~~~~~~-~~~~~l~s~~~d~~v~ 242 (401)
T 4aez_A 172 MA-GHQARVGCLSW---N-RHVLSSGSRSGAIHHHDVRIANHQI---GTLQGHSSEVCGLAWR-SDGLQLASGGNDNVVQ 242 (401)
T ss_dssp EC-CCSSCEEEEEE---E-TTEEEEEETTSEEEEEETTSSSCEE---EEEECCSSCEEEEEEC-TTSSEEEEEETTSCEE
T ss_pred ec-CCCCceEEEEE---C-CCEEEEEcCCCCEEEEecccCccee---eEEcCCCCCeeEEEEc-CCCCEEEEEeCCCeEE
Confidence 21 11123334433 2 4688999999999998865321111 1111112233222221 12233333332 2222
Q ss_pred EEecC-CcEEEe-ecccccceeeeccCCCCCCCeEEEE----eCCeEEEEEEcCCCCeEEEEEeCCCccCeEEEecCCCE
Q 001387 653 IYSSN-KKLLYS-NVNLKEVSHMCPFNSAAFPDSLAIA----KEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRT 726 (1088)
Q Consensus 653 i~~~~-~~~~~~-~l~~~~i~~~~~f~~~~~~~~l~~~----~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~ 726 (1088)
++.-+ +..... .-+...+.+++ |+. ....++.+ .++.+.+-.+... -..+.+..+..+..++++|..+.
T Consensus 243 iwd~~~~~~~~~~~~~~~~v~~~~-~~p--~~~~ll~~~~gs~d~~i~i~d~~~~--~~~~~~~~~~~v~~~~~s~~~~~ 317 (401)
T 4aez_A 243 IWDARSSIPKFTKTNHNAAVKAVA-WCP--WQSNLLATGGGTMDKQIHFWNAATG--ARVNTVDAGSQVTSLIWSPHSKE 317 (401)
T ss_dssp EEETTCSSEEEEECCCSSCCCEEE-ECT--TSTTEEEEECCTTTCEEEEEETTTC--CEEEEEECSSCEEEEEECSSSSE
T ss_pred EccCCCCCccEEecCCcceEEEEE-ECC--CCCCEEEEecCCCCCEEEEEECCCC--CEEEEEeCCCcEEEEEECCCCCe
Confidence 33222 222111 11112222221 111 11234443 2677888777654 35566777788999999999988
Q ss_pred EEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCC-ceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEE
Q 001387 727 FAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTF-EYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILV 805 (1088)
Q Consensus 727 ~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~-E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v 805 (1088)
+++++... .+.++++|..+.+.....++..+ ..+.++. +.. ...+++.|+ ..|.|.+
T Consensus 318 l~~~~g~~--------dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~---~s~-dg~~l~s~~----------~dg~i~i 375 (401)
T 4aez_A 318 IMSTHGFP--------DNNLSIWSYSSSGLTKQVDIPAHDTRVLYSA---LSP-DGRILSTAA----------SDENLKF 375 (401)
T ss_dssp EEEEECTT--------TCEEEEEEEETTEEEEEEEEECCSSCCCEEE---ECT-TSSEEEEEC----------TTSEEEE
T ss_pred EEEEeecC--------CCcEEEEecCCccceeEEEecCCCCCEEEEE---ECC-CCCEEEEEe----------CCCcEEE
Confidence 88765321 25788998877666666555443 3345543 333 356777775 3489999
Q ss_pred EEEeCCe
Q 001387 806 FIVEDGK 812 (1088)
Q Consensus 806 ~~i~~~k 812 (1088)
|++..++
T Consensus 376 w~~~~~~ 382 (401)
T 4aez_A 376 WRVYDGD 382 (401)
T ss_dssp EECCC--
T ss_pred EECCCCc
Confidence 9998554
No 14
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.08 E-value=0.015 Score=66.94 Aligned_cols=303 Identities=9% Similarity=0.070 Sum_probs=164.6
Q ss_pred cEEEEEECCCEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCC
Q 001387 490 SVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLN 569 (1088)
Q Consensus 490 ~I~~a~~~~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~ 569 (1088)
.|.+.+.++..++.+..++.+...++..++....- ..-...|.|+++. ...++.|.. ||.+.+|++.+.+
T Consensus 121 v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~--------~~~l~s~~~-dg~i~vwd~~~~~ 190 (445)
T 2ovr_B 121 VITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMR--------DNIIISGST-DRTLKVWNAETGE 190 (445)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEC-CCCSSCEEEEEEE--------TTEEEEEET-TSCEEEEETTTTE
T ss_pred cEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEE-cCCCCCEEEEEec--------CCEEEEEeC-CCeEEEEECCcCc
Confidence 35555567788888888888888777665432211 1234568888874 467888877 9999999998765
Q ss_pred ceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEecC-
Q 001387 570 LITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASD- 648 (1088)
Q Consensus 570 ~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~- 648 (1088)
.+....- ......++.+ . ...++.|..||.+..|.+... .. .....-...++.-..+ ++ ..+++.+.
T Consensus 191 ~~~~~~~-h~~~v~~~~~---~-~~~l~s~s~dg~i~~wd~~~~--~~--~~~~~~~~~~v~~~~~--~~-~~l~~~~~d 258 (445)
T 2ovr_B 191 CIHTLYG-HTSTVRCMHL---H-EKRVVSGSRDATLRVWDIETG--QC--LHVLMGHVAAVRCVQY--DG-RRVVSGAYD 258 (445)
T ss_dssp EEEEECC-CSSCEEEEEE---E-TTEEEEEETTSEEEEEESSSC--CE--EEEEECCSSCEEEEEE--CS-SCEEEEETT
T ss_pred EEEEECC-CCCcEEEEEe---c-CCEEEEEeCCCEEEEEECCCC--cE--EEEEcCCcccEEEEEE--CC-CEEEEEcCC
Confidence 5433211 1122333332 2 356899999999999876542 11 1111112233332222 22 23333333
Q ss_pred CceEEEec-CCcEE-EeecccccceeeeccCCCCCCCeEEEEe-CCeEEEEEEcCCCCeEEEEEeCC-CccCeEEEecCC
Q 001387 649 RPTVIYSS-NKKLL-YSNVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPLG-EHPRRICHQEQS 724 (1088)
Q Consensus 649 ~p~~i~~~-~~~~~-~~~l~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l~-~tp~~i~y~~~~ 724 (1088)
....++.. .++.. ....+...+.+++. .+..++... ++.+++-.+.... ..+.+.-. ..+..+.+. .
T Consensus 259 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~-----~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~--~ 329 (445)
T 2ovr_B 259 FMVKVWDPETETCLHTLQGHTNRVYSLQF-----DGIHVVSGSLDTSIRVWDVETGN--CIHTLTGHQSLTSGMELK--D 329 (445)
T ss_dssp SCEEEEEGGGTEEEEEECCCSSCEEEEEE-----CSSEEEEEETTSCEEEEETTTCC--EEEEECCCCSCEEEEEEE--T
T ss_pred CEEEEEECCCCcEeEEecCCCCceEEEEE-----CCCEEEEEeCCCeEEEEECCCCC--EEEEEcCCcccEEEEEEe--C
Confidence 32323321 22211 11112233333332 122344443 6778887776543 23333322 223334433 3
Q ss_pred CEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECC--CCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceE
Q 001387 725 RTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD--TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGR 802 (1088)
Q Consensus 725 ~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~--~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gr 802 (1088)
+.+++++.+ +.|+++|..+++.+..+... ....+.++. +. ..+++.|+ ..|.
T Consensus 330 ~~l~~~~~d----------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~---~~---~~~l~s~~----------~dg~ 383 (445)
T 2ovr_B 330 NILVSGNAD----------STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ---FN---KNFVITSS----------DDGT 383 (445)
T ss_dssp TEEEEEETT----------SCEEEEETTTCCEEEEECSTTSCSSCEEEEE---EC---SSEEEEEE----------TTSE
T ss_pred CEEEEEeCC----------CeEEEEECCCCcEEEEEccCCCCCCCEEEEE---EC---CCEEEEEe----------CCCe
Confidence 444444322 57999999888888877653 233455554 32 46888886 3489
Q ss_pred EEEEEEeCCeE-EEEEE---EEecCceeEeccccCe-EEEEEC--C----EEEEEEee
Q 001387 803 ILVFIVEDGKL-QLIAE---KETKGAVYSLNAFNGK-LLAAIN--Q----KIQLYKWM 849 (1088)
Q Consensus 803 i~v~~i~~~kl-~~~~~---~~~~g~v~ai~~~~g~-Lv~~~g--~----~l~v~~~~ 849 (1088)
|.+|++..++. ..+.. ....++|++++--.+. ++++.+ + ++.+++|+
T Consensus 384 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 384 VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp EEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred EEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence 99999886553 33322 2457889988865443 333322 2 37777763
No 15
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=98.02 E-value=0.0007 Score=76.00 Aligned_cols=282 Identities=11% Similarity=0.094 Sum_probs=141.8
Q ss_pred CCceeEEEEeCCCCCCCCCccEEEEEE------ecCCEEEEEECCCCCceE---EecCCCCcCceeEEeeeecCceEEEE
Q 001387 528 LEYEISCLDINPIGENPSYSQIAAVGM------WTDISVRIFSLPDLNLIT---KEHLGGEIIPRSVLLCAFEGISYLLC 598 (1088)
Q Consensus 528 l~~~is~l~~~~~~~~~~~~~~~~vg~------w~~~~i~i~~l~~l~~~~---~~~l~~~~~p~si~~~~~~~~~~L~v 598 (1088)
.+..|.|++++| .+.+++.|. | |+++.+|+.++..... ...........++.+. ....+++
T Consensus 41 H~~~V~~v~fSp------DG~~las~s~d~~~~w-d~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s---~d~~~l~ 110 (357)
T 4g56_B 41 MEVQIGAVRYRR------DGALLLAASSLSSRTW-GGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWV---SEKGILV 110 (357)
T ss_dssp CCSEEEEEEECS------SSCEEEEEECSSSSSC-CEEEEEESSCC---CGGGCSEEEECSSCEEEEEEE---TTTEEEE
T ss_pred ccCCEEEEEECC------CCCEEEEEcCCCCccc-cCeEEEEECCCCCcceeEecccCCCCCCEEEEEEc---CCCCEEE
Confidence 456789999976 245666664 6 8899999987533211 0111111123344433 2346778
Q ss_pred EeCCCcEEEEEEecCCCccccceeeecC-ccceeEEEEEeCCceEEEEecCCc-eEEEecC-CcEE-Eeecccccceeee
Q 001387 599 ALGDGHLLNFLLNMKTGELTDRKKVSLG-TQPITLRTFSSKNTTHVFAASDRP-TVIYSSN-KKLL-YSNVNLKEVSHMC 674 (1088)
Q Consensus 599 gl~~G~l~~y~~~~~~~~l~~~~~~~lG-~~pv~l~~~~~~~~~~v~~~~~~p-~~i~~~~-~~~~-~~~l~~~~i~~~~ 674 (1088)
+..||.+..|.+....... ..+....| ..+|.=..+. .+...++..+..- ..++..+ ++.. ....+...+.+++
T Consensus 111 ~s~dg~v~lWd~~~~~~~~-~~~~~~~~h~~~V~~v~~s-pdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~ 188 (357)
T 4g56_B 111 ASDSGAVELWEILEKESLL-VNKFAKYEHDDIVKTLSVF-SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVA 188 (357)
T ss_dssp EETTSCEEEC--------C-CCCEEECCCSSCEEEEEEC-SSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred EECCCEEEEeeccccceeE-EEeeccCCCCCCEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 8999999888775432111 11111122 2344322332 1223333333333 3333222 2221 1111223333322
Q ss_pred ccCCCCCCCeEEEEe-CCeEEEEEEcCCCCeEEEEEe-CCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCC
Q 001387 675 PFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIP-LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQ 752 (1088)
Q Consensus 675 ~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~-l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~ 752 (1088)
|+.. -+..++... ++.+++-.+............ -...+..++++|....+++..... ..|+++|..
T Consensus 189 -~s~~-~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d---------~~i~~wd~~ 257 (357)
T 4g56_B 189 -ACPG-KDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDET---------GNVSLVNIK 257 (357)
T ss_dssp -ECTT-CSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESS---------SCEEEEESS
T ss_pred -EccC-CCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecc---------cceeEEECC
Confidence 2111 111233333 567777655443322111111 123467789998765444433322 468999988
Q ss_pred CceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEecc--
Q 001387 753 TFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNA-- 830 (1088)
Q Consensus 753 t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~-- 830 (1088)
+.+.+..+.... ..+.++ .+..++..+|+.|. ..|.|++|++..+++ +....+.++|++++-
T Consensus 258 ~~~~~~~~~~~~-~~v~~l---~~sp~~~~~lasgs----------~D~~i~iwd~~~~~~--~~~~~H~~~V~~vafsP 321 (357)
T 4g56_B 258 NPDSAQTSAVHS-QNITGL---AYSYHSSPFLASIS----------EDCTVAVLDADFSEV--FRDLSHRDFVTGVAWSP 321 (357)
T ss_dssp CGGGCEEECCCS-SCEEEE---EECSSSSCCEEEEE----------TTSCEEEECTTSCEE--EEECCCSSCEEEEEECS
T ss_pred CCcEeEEEeccc-eeEEEE---EEcCCCCCEEEEEe----------CCCEEEEEECCCCcE--eEECCCCCCEEEEEEeC
Confidence 887766655433 334554 35544567787765 237899998776543 334467899999973
Q ss_pred ccCeEEEEEC--CEEEEEEe
Q 001387 831 FNGKLLAAIN--QKIQLYKW 848 (1088)
Q Consensus 831 ~~g~Lv~~~g--~~l~v~~~ 848 (1088)
.++.++++.| .+|+++++
T Consensus 322 ~d~~~l~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 322 LDHSKFTTVGWDHKVLHHHL 341 (357)
T ss_dssp SSTTEEEEEETTSCEEEEEC
T ss_pred CCCCEEEEEcCCCeEEEEEC
Confidence 4566665444 78888776
No 16
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=98.01 E-value=0.005 Score=68.33 Aligned_cols=277 Identities=14% Similarity=0.131 Sum_probs=150.6
Q ss_pred CceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEE
Q 001387 529 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNF 608 (1088)
Q Consensus 529 ~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y 608 (1088)
...|.|+++.+ .+.+++.|.. |+.+++|++.+.+.+....... ....++.+. .+..+|..|..||.+..|
T Consensus 55 ~~~v~~~~~s~------d~~~l~s~s~-Dg~v~iWd~~~~~~~~~~~~~~-~~v~~~~~s--~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 55 LAKIYAMHWGT------DSRLLLSASQ-DGKLIIWDSYTTNKVHAIPLRS-SWVMTCAYA--PSGNYVACGGLDNICSIY 124 (340)
T ss_dssp SSCEEEEEECT------TSSEEEEEET-TTEEEEEETTTCCEEEEEECSS-SCEEEEEEC--TTSSEEEEEETTCEEEEE
T ss_pred CCceEEEEECC------CCCEEEEEeC-CCcEEEEECCCCCcceEeecCC-ccEEEEEEC--CCCCEEEEEeCCCeEEEE
Confidence 45688999864 2568888877 9999999987655543322211 122334333 245688999999999998
Q ss_pred EEecCCCccccceeeecCccceeEEEEEeCCceEEEEec-CCceEEEecC-CcEEE-eecccccceeeeccCCCCCCCeE
Q 001387 609 LLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAAS-DRPTVIYSSN-KKLLY-SNVNLKEVSHMCPFNSAAFPDSL 685 (1088)
Q Consensus 609 ~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~-~~p~~i~~~~-~~~~~-~~l~~~~i~~~~~f~~~~~~~~l 685 (1088)
.+....+.....+...--..++.-..+..++ .++..+ +....++.-. ++... ..-+...+.+++ |+. ....+
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~-~~~--~~~~l 199 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLS-LAP--DTRLF 199 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE-ECT--TSSEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEE-ECC--CCCEE
Confidence 8754332222222111112233333332222 233333 3333333222 22211 111122333322 211 11233
Q ss_pred EEEe-CCeEEEEEEcCCCCeEEEEEeC-CCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECC
Q 001387 686 AIAK-EGELTIGTIDDIQKLHIRSIPL-GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD 763 (1088)
Q Consensus 686 ~~~~-~~~l~i~~l~~~~~~~~~~i~l-~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~ 763 (1088)
+... ++.+++-.+.... ..+.+.- ...+..++++|+.+.++.++.+ ..|++.|..+.+.+..+..+
T Consensus 200 ~sg~~d~~v~~wd~~~~~--~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d----------~~v~iwd~~~~~~~~~~~~~ 267 (340)
T 1got_B 200 VSGACDASAKLWDVREGM--CRQTFTGHESDINAICFFPNGNAFATGSDD----------ATCRLFDLRADQELMTYSHD 267 (340)
T ss_dssp EEEETTSCEEEEETTTCS--EEEEECCCSSCEEEEEECTTSSEEEEEETT----------SCEEEEETTTTEEEEEECCT
T ss_pred EEEeCCCcEEEEECCCCe--eEEEEcCCcCCEEEEEEcCCCCEEEEEcCC----------CcEEEEECCCCcEEEEEccC
Confidence 3333 6778887765432 3334432 3456789999998887776543 47999999888877766543
Q ss_pred CCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cCe-EEEEE-C
Q 001387 764 TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGK-LLAAI-N 840 (1088)
Q Consensus 764 ~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g~-Lv~~~-g 840 (1088)
... ..+..+.+.. ...+++.|+ ..|.|.+|++...+.... -..+.++|++++-- +|. |+.+. .
T Consensus 268 ~~~--~~v~~~~~s~-~g~~l~~g~----------~d~~i~vwd~~~~~~~~~-~~~h~~~v~~~~~s~dg~~l~s~s~D 333 (340)
T 1got_B 268 NII--CGITSVSFSK-SGRLLLAGY----------DDFNCNVWDALKADRAGV-LAGHDNRVSCLGVTDDGMAVATGSWD 333 (340)
T ss_dssp TCC--SCEEEEEECT-TSSEEEEEE----------TTSEEEEEETTTCCEEEE-EECCSSCEEEEEECTTSSCEEEEETT
T ss_pred Ccc--cceEEEEECC-CCCEEEEEC----------CCCeEEEEEcccCcEeeE-eecCCCcEEEEEEcCCCCEEEEEcCC
Confidence 321 2233344544 356788776 348999999875443221 13467899998754 444 44333 3
Q ss_pred CEEEEE
Q 001387 841 QKIQLY 846 (1088)
Q Consensus 841 ~~l~v~ 846 (1088)
.+|+++
T Consensus 334 ~~i~iW 339 (340)
T 1got_B 334 SFLKIW 339 (340)
T ss_dssp SCEEEE
T ss_pred ccEEec
Confidence 456664
No 17
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=97.99 E-value=0.019 Score=63.73 Aligned_cols=286 Identities=12% Similarity=0.040 Sum_probs=152.4
Q ss_pred CCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEE
Q 001387 528 LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLN 607 (1088)
Q Consensus 528 l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~ 607 (1088)
-...|+|+++.+ ...+++.|.. ++.+.+|++.+.+.+....- ......++.+.. +..+|+.+..||.+..
T Consensus 31 h~~~v~~~~~s~------~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~--~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 31 HERPLTQVKYNK------EGDLLFSCSK-DSSASVWYSLNGERLGTLDG-HTGTIWSIDVDC--FTKYCVTGSADYSIKL 100 (369)
T ss_dssp CSSCEEEEEECT------TSCEEEEEES-SSCEEEEETTTCCEEEEECC-CSSCEEEEEECT--TSSEEEEEETTTEEEE
T ss_pred eeceEEEEEEcC------CCCEEEEEeC-CCEEEEEeCCCchhhhhhhh-cCCcEEEEEEcC--CCCEEEEEeCCCeEEE
Confidence 356799999975 2568888877 99999999987665433211 112334554432 4568889999999999
Q ss_pred EEEecCCCccccceeeecCccceeEEEEEeCCceEEEEecCC-----ce-EEEe-c-CC-cEEEeecccccceee-----
Q 001387 608 FLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDR-----PT-VIYS-S-NK-KLLYSNVNLKEVSHM----- 673 (1088)
Q Consensus 608 y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~-----p~-~i~~-~-~~-~~~~~~l~~~~i~~~----- 673 (1088)
|.+... ... .... ...++.-..+. .+...+++.+.. .. .++. . .. ...+.......+..+
T Consensus 101 wd~~~~--~~~--~~~~-~~~~v~~~~~~-~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (369)
T 3zwl_B 101 WDVSNG--QCV--ATWK-SPVPVKRVEFS-PCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG 174 (369)
T ss_dssp EETTTC--CEE--EEEE-CSSCEEEEEEC-TTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred EECCCC--cEE--EEee-cCCCeEEEEEc-cCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence 876532 211 1112 22333322332 223344444433 22 2221 1 11 011111111111111
Q ss_pred ------eccCCCCCCCeEEEEe-CCeEEEEEEcCCCCeEEEEEeC-CCccCeEEEecCCCEEEEEEeecCCCcCcceeEE
Q 001387 674 ------CPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPL-GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHF 745 (1088)
Q Consensus 674 ------~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l-~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~ 745 (1088)
..|+. ..+.++... ++.+.+..+.... -..+.+.. ...+..++++|+.+.+++++.+ ..
T Consensus 175 ~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------~~ 241 (369)
T 3zwl_B 175 LDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNY-EYVDSIDLHEKSISDMQFSPDLTYFITSSRD----------TN 241 (369)
T ss_dssp CCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTT-EEEEEEECCSSCEEEEEECTTSSEEEEEETT----------SE
T ss_pred ccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCc-EeEEEEecCCCceeEEEECCCCCEEEEecCC----------ce
Confidence 11111 112344444 6778877776532 33444443 4567789999988887776543 47
Q ss_pred EEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCC----CCCCCcceEEEEEEEeCCeEEEEEEEEe
Q 001387 746 VRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLP----EENEPTKGRILVFIVEDGKLQLIAEKET 821 (1088)
Q Consensus 746 l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~----~e~~~~~Gri~v~~i~~~kl~~~~~~~~ 821 (1088)
|+++|..+++.+..+. ....+.+++ +.. ...++++|+..... .........+.+|+....+..... ...
T Consensus 242 i~v~d~~~~~~~~~~~--~~~~~~~~~---~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~ 314 (369)
T 3zwl_B 242 SFLVDVSTLQVLKKYE--TDCPLNTAV---ITP-LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV-QGH 314 (369)
T ss_dssp EEEEETTTCCEEEEEE--CSSCEEEEE---ECS-SSSEEEEEECCC-------------CEEEEEETTTCCEEEEE-ECC
T ss_pred EEEEECCCCceeeeec--CCCCceeEE---ecC-CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe-ecc
Confidence 9999999998888777 333344433 333 35677777643110 011122337778877654432222 346
Q ss_pred cCceeEeccc-cCeEEEEE--CCEEEEEEee
Q 001387 822 KGAVYSLNAF-NGKLLAAI--NQKIQLYKWM 849 (1088)
Q Consensus 822 ~g~v~ai~~~-~g~Lv~~~--g~~l~v~~~~ 849 (1088)
.++|++++-- ++.++++. ...|++|+++
T Consensus 315 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 315 FGPLNTVAISPQGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEECc
Confidence 7889888754 45444433 4688998874
No 18
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=97.98 E-value=0.016 Score=65.38 Aligned_cols=287 Identities=14% Similarity=0.032 Sum_probs=157.2
Q ss_pred CcEEEEEECCCEEEEEECCCeEEEEEEcCcE-------EEEEeeccCCceeEEEEeCCCCCCCCCc---cEEEEEEecCC
Q 001387 489 YSVNVATANASQVLLATGGGHLVYLEIGDGI-------LTEVKHAQLEYEISCLDINPIGENPSYS---QIAAVGMWTDI 558 (1088)
Q Consensus 489 ~~I~~a~~~~~~lvv~~~~~~l~~~~~~~~~-------l~~~~~~~l~~~is~l~~~~~~~~~~~~---~~~~vg~w~~~ 558 (1088)
..|.+.+.++..++.+..++.+..++++.++ +.... .....|.|+++.+-. .... .+++.|.. ++
T Consensus 17 ~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~--~~~g~~~~~l~s~~~-dg 91 (397)
T 1sq9_A 17 ADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF--VHKSGLHHVDVLQAI--ERDAFELCLVATTSF-SG 91 (397)
T ss_dssp SCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE--CCTTCEEEEEEEEEE--ETTTEEEEEEEEEET-TS
T ss_pred cCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEe--cCCCcEEEEEEeccc--ccCCccccEEEEEcC-CC
Confidence 4688888888888888788888888876543 33332 335678999886410 0013 67777777 99
Q ss_pred EEEEEECCCCCc-----eEEecCCC----CcCceeEEeeee--cCceE-EEEEeCCCcEEEEEEec------CCCccccc
Q 001387 559 SVRIFSLPDLNL-----ITKEHLGG----EIIPRSVLLCAF--EGISY-LLCALGDGHLLNFLLNM------KTGELTDR 620 (1088)
Q Consensus 559 ~i~i~~l~~l~~-----~~~~~l~~----~~~p~si~~~~~--~~~~~-L~vgl~~G~l~~y~~~~------~~~~l~~~ 620 (1088)
.|.+|++.+.+. ........ ...+.++.+... .+..+ |++|..||.+..|.+.. .. .+...
T Consensus 92 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~ 170 (397)
T 1sq9_A 92 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL-TLNWS 170 (397)
T ss_dssp CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT-TTCCC
T ss_pred CEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc-eeecc
Confidence 999999875442 22211110 123445554411 23466 88999999999999876 21 12111
Q ss_pred e--eee-------cCccceeEEEEEeCCceEEEEecCCceEEEec-C-CcEE-Eeec---c---cccceeeeccCCCCCC
Q 001387 621 K--KVS-------LGTQPITLRTFSSKNTTHVFAASDRPTVIYSS-N-KKLL-YSNV---N---LKEVSHMCPFNSAAFP 682 (1088)
Q Consensus 621 ~--~~~-------lG~~pv~l~~~~~~~~~~v~~~~~~p~~i~~~-~-~~~~-~~~l---~---~~~i~~~~~f~~~~~~ 682 (1088)
. ... ....++.-..+. .+. .+++.+..-.+...+ + ++.. .... + ...+.+++ |+. ..
T Consensus 171 ~~~~~~~~~~~~~~~~~~i~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~-~~~--~~ 245 (397)
T 1sq9_A 171 PTLELQGTVESPMTPSQFATSVDIS-ERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK-FSP--QG 245 (397)
T ss_dssp CEEEEEEEECCSSSSCCCCCEEEEC-TTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE-ECS--ST
T ss_pred CcceeeeeeccccCCCCCceEEEEC-CCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEE-ECC--CC
Confidence 1 110 012233222222 122 333333333332222 2 2221 1111 1 22232222 211 12
Q ss_pred CeEEEEe-C---CeEEEEEEcCCCCeEEEEEe--------------CCCccCeEEEecCCCEEEEEEeecCCCcCcceeE
Q 001387 683 DSLAIAK-E---GELTIGTIDDIQKLHIRSIP--------------LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMH 744 (1088)
Q Consensus 683 ~~l~~~~-~---~~l~i~~l~~~~~~~~~~i~--------------l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s 744 (1088)
..++... + +.+++..+.... ..+.+. -...+..+.++|+.+.++.++.+ +
T Consensus 246 ~~l~~~~~d~~~g~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------g 313 (397)
T 1sq9_A 246 SLLAIAHDSNSFGCITLYETEFGE--RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD----------G 313 (397)
T ss_dssp TEEEEEEEETTEEEEEEEETTTCC--EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT----------S
T ss_pred CEEEEEecCCCCceEEEEECCCCc--ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCC----------C
Confidence 3344444 4 577777776543 334444 34567889999988877766533 5
Q ss_pred EEEEEeCCCceEEEEEECC-----C---------------CceEeEEEEEEEcCCCc---------eEEEEEeeeeCCCC
Q 001387 745 FVRLLDDQTFEFISTYPLD-----T---------------FEYGCSILSCSFSDDSN---------VYYCVGTAYVLPEE 795 (1088)
Q Consensus 745 ~l~lid~~t~~~i~~~~~~-----~---------------~E~v~si~~~~~~~~~~---------~~i~VGT~~~~~~e 795 (1088)
.|+++|..+++.+..+... . ...+.+++. ..+++ ++++.|+
T Consensus 314 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~---~~~g~~~~~~~~~~~~l~s~~------- 383 (397)
T 1sq9_A 314 KLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKF---LKKGWRSGMGADLNESLCCVC------- 383 (397)
T ss_dssp EEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEE---ECTTTSBSTTCTTSCEEEEEE-------
T ss_pred eEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEe---ccccccccccccccceEEEec-------
Confidence 7999999999988887732 1 344555543 33322 6788776
Q ss_pred CCCcceEEEEEEEeCC
Q 001387 796 NEPTKGRILVFIVEDG 811 (1088)
Q Consensus 796 ~~~~~Gri~v~~i~~~ 811 (1088)
..|.|.+|++..+
T Consensus 384 ---~dg~i~iw~~~~g 396 (397)
T 1sq9_A 384 ---LDRSIRWFREAGG 396 (397)
T ss_dssp ---TTTEEEEEEEEC-
T ss_pred ---CCCcEEEEEcCCC
Confidence 3489999988654
No 19
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=97.95 E-value=0.015 Score=63.75 Aligned_cols=291 Identities=11% Similarity=0.115 Sum_probs=146.4
Q ss_pred ccEEEEEEecCCEEEEEECCC-CCceEEecCCCCcCceeEEeeeecCceEEEEEeCC-CcEEEEEEecCCCccccceeee
Q 001387 547 SQIAAVGMWTDISVRIFSLPD-LNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGD-GHLLNFLLNMKTGELTDRKKVS 624 (1088)
Q Consensus 547 ~~~~~vg~w~~~~i~i~~l~~-l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~-G~l~~y~~~~~~~~l~~~~~~~ 624 (1088)
..+++++...++.+.+|++.. -+......+.....|..+.+.. +..+|+++..+ |.+..|.++..++.+.......
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 81 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP--DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA 81 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT--TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECC--CCCEEEEeecCCCeEEEEEecCCCCceeeccccc
Confidence 356666655589999999852 2211111122223566665543 34567777665 8999999875444332211111
Q ss_pred cCccceeEEEEEeCCceEEEEecCCceEEEecCCcEEEeecccccceeeeccCCCCCCCeEEEEe--CCeEEEEEEcCC-
Q 001387 625 LGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAK--EGELTIGTIDDI- 701 (1088)
Q Consensus 625 lG~~pv~l~~~~~~~~~~v~~~~~~p~~i~~~~~~~~~~~l~~~~i~~~~~f~~~~~~~~l~~~~--~~~l~i~~l~~~- 701 (1088)
.+..|..+ .+..+++. ++++. ++.+.+..++..
T Consensus 82 ~~~~~~~~--------------------~~s~dg~~------------------------l~~~~~~~~~i~~~d~~~~~ 117 (343)
T 1ri6_A 82 LPGSLTHI--------------------STDHQGQF------------------------VFVGSYNAGNVSVTRLEDGL 117 (343)
T ss_dssp CSSCCSEE--------------------EECTTSSE------------------------EEEEETTTTEEEEEEEETTE
T ss_pred cCCCCcEE--------------------EEcCCCCE------------------------EEEEecCCCeEEEEECCCCc
Confidence 11111111 01111111 11111 233444444211
Q ss_pred CCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCC-ceE--EE--EEECCCCceEeEEEEEEE
Q 001387 702 QKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQT-FEF--IS--TYPLDTFEYGCSILSCSF 776 (1088)
Q Consensus 702 ~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t-~~~--i~--~~~~~~~E~v~si~~~~~ 776 (1088)
..-..+.++.+..|..++++|+.+.++++.... ..|.++|..+ .+. +. ......+..+.++ .+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~---------~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 185 (343)
T 1ri6_A 118 PVGVVDVVEGLDGCHSANISPDNRTLWVPALKQ---------DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHM---VF 185 (343)
T ss_dssp EEEEEEEECCCTTBCCCEECTTSSEEEEEEGGG---------TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEE---EE
T ss_pred cccccccccCCCCceEEEECCCCCEEEEecCCC---------CEEEEEEecCCCceeeecccccccCCCCCcceE---EE
Confidence 112345556667788999999988776665322 4578877655 433 22 4455555555543 34
Q ss_pred cCCCceEEEEEeeeeCCCCCCCcceEEEEEEEe--CCeEEEEEEEE-ecC------ceeEeccc--cCeEEEEEC--CEE
Q 001387 777 SDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE--DGKLQLIAEKE-TKG------AVYSLNAF--NGKLLAAIN--QKI 843 (1088)
Q Consensus 777 ~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~--~~kl~~~~~~~-~~g------~v~ai~~~--~g~Lv~~~g--~~l 843 (1088)
..+++ +++++.. ..|++.+|++. .++++...... .+. .+.+++-- +.+|+++.. +.+
T Consensus 186 ~pdg~-~l~~~~~---------~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i 255 (343)
T 1ri6_A 186 HPNEQ-YAYCVNE---------LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLI 255 (343)
T ss_dssp CTTSS-EEEEEET---------TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred CCCCC-EEEEEeC---------CCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEE
Confidence 44434 4444431 34789999885 34554433322 111 23334322 335666653 688
Q ss_pred EEEEeeeccCcccccccccccccceEEEEEEEeCCEEEEEec-cccEEEEEEeccCCeEEEEec
Q 001387 844 QLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDL-MKSISLLIYKHEEGAIEERAR 906 (1088)
Q Consensus 844 ~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~-~~Sv~~~~~~~~~~~l~~~~~ 906 (1088)
.+|+++. +.+..+..........+..+.++..++++++++. ...+.++.++.+.+++..+..
T Consensus 256 ~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~ 318 (343)
T 1ri6_A 256 TVFSVSE-DGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGR 318 (343)
T ss_dssp EEEEECT-TSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEE
T ss_pred EEEEEcC-CCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccc
Confidence 8888631 1122222211111111222333445778888885 567777777776666665543
No 20
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.94 E-value=0.012 Score=67.87 Aligned_cols=305 Identities=11% Similarity=0.078 Sum_probs=158.3
Q ss_pred eEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEe
Q 001387 532 ISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLN 611 (1088)
Q Consensus 532 is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~ 611 (1088)
++|+++. +.+++.|.. ||.+.+|++.+.+.+.... .......++.+. ...++.|..||.+..|.+.
T Consensus 122 ~~~~~~~--------g~~l~sg~~-dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~----~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 122 ITCLQFC--------GNRIVSGSD-DNTLKVWSAVTGKCLRTLV-GHTGGVWSSQMR----DNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp EEEEEEE--------TTEEEEEET-TSCEEEEETTTCCEEEECC-CCSSCEEEEEEE----TTEEEEEETTSCEEEEETT
T ss_pred EEEEEEc--------CCEEEEEEC-CCcEEEEECCCCcEEEEEc-CCCCCEEEEEec----CCEEEEEeCCCeEEEEECC
Confidence 5677763 578888888 9999999998766543211 111222333322 3578899999999998764
Q ss_pred cCCCccccceeeecCccceeEEEEEeCCceEEEEecCCceEEEec--CCcE-EEeecccccceeeeccCCCCCCCeEEEE
Q 001387 612 MKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSS--NKKL-LYSNVNLKEVSHMCPFNSAAFPDSLAIA 688 (1088)
Q Consensus 612 ~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~i~~~--~~~~-~~~~l~~~~i~~~~~f~~~~~~~~l~~~ 688 (1088)
. ++. .....-...++.-..+. + ..+++.+..-.+...+ .++. ....-+...+.+++. .++.++..
T Consensus 188 ~--~~~--~~~~~~h~~~v~~~~~~--~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~-----~~~~l~~~ 255 (445)
T 2ovr_B 188 T--GEC--IHTLYGHTSTVRCMHLH--E-KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-----DGRRVVSG 255 (445)
T ss_dssp T--TEE--EEEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-----CSSCEEEE
T ss_pred c--CcE--EEEECCCCCcEEEEEec--C-CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE-----CCCEEEEE
Confidence 3 211 11111122334322222 2 2344444333333222 2222 111222233444332 12344444
Q ss_pred e-CCeEEEEEEcCCCCeEEEEEeCC-CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCc
Q 001387 689 K-EGELTIGTIDDIQKLHIRSIPLG-EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFE 766 (1088)
Q Consensus 689 ~-~~~l~i~~l~~~~~~~~~~i~l~-~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E 766 (1088)
. ++.+++-.+... -..+++.-. .....+.+ +.+.+++++.+ ..|++.|..+++.+..+.-.. .
T Consensus 256 ~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d----------~~i~i~d~~~~~~~~~~~~~~-~ 320 (445)
T 2ovr_B 256 AYDFMVKVWDPETE--TCLHTLQGHTNRVYSLQF--DGIHVVSGSLD----------TSIRVWDVETGNCIHTLTGHQ-S 320 (445)
T ss_dssp ETTSCEEEEEGGGT--EEEEEECCCSSCEEEEEE--CSSEEEEEETT----------SCEEEEETTTCCEEEEECCCC-S
T ss_pred cCCCEEEEEECCCC--cEeEEecCCCCceEEEEE--CCCEEEEEeCC----------CeEEEEECCCCCEEEEEcCCc-c
Confidence 4 677877776543 233444422 23445555 34455444432 469999998888877664322 2
Q ss_pred eEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEE--EEecCceeEeccccCeEEEEE-CCEE
Q 001387 767 YGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAE--KETKGAVYSLNAFNGKLLAAI-NQKI 843 (1088)
Q Consensus 767 ~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~--~~~~g~v~ai~~~~g~Lv~~~-g~~l 843 (1088)
.+.++. +. ..++++|+ ..|.|.+|++..++...... ....++|++++.-+++|+++. .+.|
T Consensus 321 ~v~~~~---~~---~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v 384 (445)
T 2ovr_B 321 LTSGME---LK---DNILVSGN----------ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 384 (445)
T ss_dssp CEEEEE---EE---TTEEEEEE----------TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEE
T ss_pred cEEEEE---Ee---CCEEEEEe----------CCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeE
Confidence 333332 32 35777776 34789999987554322221 126788999886445555554 4678
Q ss_pred EEEEeeeccCccccccccc---ccccceEEEEEEEe--CCEEEEEecccc----EEEEEEecc
Q 001387 844 QLYKWMLRDDGTRELQSEC---GHHGHILALYVQTR--GDFIVVGDLMKS----ISLLIYKHE 897 (1088)
Q Consensus 844 ~v~~~~~~~~~~~~L~~~~---~~~~~~~~~~l~~~--~~~I~vgD~~~S----v~~~~~~~~ 897 (1088)
++|++. .+ +.+.... .......+.++... +.++++|+.-.. +.++.|+.+
T Consensus 385 ~iwd~~---~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 385 KLWDLK---TG-EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEETT---TC-CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEECC---CC-ceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 888753 22 1121110 00111234444443 345666666554 666666544
No 21
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.94 E-value=0.0086 Score=65.24 Aligned_cols=276 Identities=15% Similarity=0.151 Sum_probs=147.5
Q ss_pred CceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEE
Q 001387 529 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNF 608 (1088)
Q Consensus 529 ~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y 608 (1088)
...|+|+++.+ .+.+++.|.. |+.+++|++.+.+...... .......++.+.+ +..+|+.|..||.+..|
T Consensus 23 ~~~v~~~~~s~------~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~--~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 23 TKAVSSVKFSP------NGEWLASSSA-DKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSS--DSNLLVSASDDKTLKIW 92 (312)
T ss_dssp SSCEEEEEECT------TSSEEEEEET-TSCEEEEETTTCCEEEEEC-CCSSCEEEEEECT--TSSEEEEEETTSEEEEE
T ss_pred CCcEEEEEECC------CCCEEEEeeC-CCeEEEEeCCCcccchhhc-cCCCceEEEEEcC--CCCEEEEECCCCEEEEE
Confidence 45789999975 2568888877 9999999987654432211 1112334444332 45788999999999998
Q ss_pred EEecCCCccccceeeecCccceeEEEEEeCCceEEEEecCCc-eEEEec-CCc-EEEeecccccceeeeccCCCCCCCeE
Q 001387 609 LLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRP-TVIYSS-NKK-LLYSNVNLKEVSHMCPFNSAAFPDSL 685 (1088)
Q Consensus 609 ~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p-~~i~~~-~~~-~~~~~l~~~~i~~~~~f~~~~~~~~l 685 (1088)
.+... .. .+...-...++.-..+. ...+.++..+... ..++.- .++ +...+.+..++.+++ |+. ....+
T Consensus 93 d~~~~--~~--~~~~~~~~~~v~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~-~~~--~~~~l 164 (312)
T 4ery_A 93 DVSSG--KC--LKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH-FNR--DGSLI 164 (312)
T ss_dssp ETTTC--CE--EEEEECCSSCEEEEEEC-SSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE-ECT--TSSEE
T ss_pred ECCCC--cE--EEEEcCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEE-EcC--CCCEE
Confidence 76532 11 11111112233222221 1222333333322 223221 222 211121222333322 221 12234
Q ss_pred EEEe-CCeEEEEEEcCCCCeEEEEEeCC--CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEEC
Q 001387 686 AIAK-EGELTIGTIDDIQKLHIRSIPLG--EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPL 762 (1088)
Q Consensus 686 ~~~~-~~~l~i~~l~~~~~~~~~~i~l~--~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~ 762 (1088)
+... ++.+++-.+.... ..+.+... .....++++|..+.+++++.+ ..|+++|..+.+.+..+.-
T Consensus 165 ~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----------~~i~iwd~~~~~~~~~~~~ 232 (312)
T 4ery_A 165 VSSSYDGLCRIWDTASGQ--CLKTLIDDDNPPVSFVKFSPNGKYILAATLD----------NTLKLWDYSKGKCLKTYTG 232 (312)
T ss_dssp EEEETTSCEEEEETTTCC--EEEEECCSSCCCEEEEEECTTSSEEEEEETT----------TEEEEEETTTTEEEEEECS
T ss_pred EEEeCCCcEEEEECCCCc--eeeEEeccCCCceEEEEECCCCCEEEEEcCC----------CeEEEEECCCCcEEEEEEe
Confidence 4443 6778877766533 23333322 234568899988877776543 4799999988888877765
Q ss_pred CCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cCe-EEEEE-
Q 001387 763 DTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGK-LLAAI- 839 (1088)
Q Consensus 763 ~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g~-Lv~~~- 839 (1088)
..++....... +...+..+++.|+ ..|.|++|++..+++.... ....++|.+++-- ++. |+.+.
T Consensus 233 ~~~~~~~~~~~--~~~~~~~~l~sg~----------~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~~~ 299 (312)
T 4ery_A 233 HKNEKYCIFAN--FSVTGGKWIVSGS----------EDNLVYIWNLQTKEIVQKL-QGHTDVVISTACHPTENIIASAAL 299 (312)
T ss_dssp SCCSSSCCCEE--EECSSSCEEEECC----------TTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECSSSSEEEEEEC
T ss_pred cCCceEEEEEE--EEeCCCcEEEEEC----------CCCEEEEEECCCchhhhhh-hccCCcEEEEeecCcCCceEEEEc
Confidence 44443211112 2222456777665 3478999998765542211 2356788887654 344 44443
Q ss_pred --CCEEEEEE
Q 001387 840 --NQKIQLYK 847 (1088)
Q Consensus 840 --g~~l~v~~ 847 (1088)
...|++++
T Consensus 300 ~~d~~i~~W~ 309 (312)
T 4ery_A 300 ENDKTIKLWK 309 (312)
T ss_dssp TTTCCEEEEE
T ss_pred cCCccEEEec
Confidence 46677765
No 22
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.93 E-value=0.032 Score=64.50 Aligned_cols=181 Identities=13% Similarity=0.113 Sum_probs=104.8
Q ss_pred ecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcc
Q 001387 721 QEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTK 800 (1088)
Q Consensus 721 ~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~ 800 (1088)
.+..+.+++++.+ +.|++.|..+.+.+..+.-. ...+.+++ +.. ..+++++|+ ..
T Consensus 277 ~~~~~~l~~~~~d----------~~i~vwd~~~~~~~~~~~~~-~~~v~~~~---~~~-~~~~l~sg~----------~d 331 (464)
T 3v7d_B 277 SGHGNIVVSGSYD----------NTLIVWDVAQMKCLYILSGH-TDRIYSTI---YDH-ERKRCISAS----------MD 331 (464)
T ss_dssp EEETTEEEEEETT----------SCEEEEETTTTEEEEEECCC-SSCEEEEE---EET-TTTEEEEEE----------TT
T ss_pred cCCCCEEEEEeCC----------CeEEEEECCCCcEEEEecCC-CCCEEEEE---EcC-CCCEEEEEe----------CC
Confidence 3445566555433 46999999888887765432 23455544 332 345777776 34
Q ss_pred eEEEEEEEeCCeEEEEEEEEecCceeEeccccCeEEEEEC-CEEEEEEeeeccCcccccccccccccceEEEEEEEeCCE
Q 001387 801 GRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAIN-QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDF 879 (1088)
Q Consensus 801 Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~g~Lv~~~g-~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~ 879 (1088)
|.|++|++..++..... ....++|++++.-+++|+.+.. +.|++|++. .+...... ........+.+...+++
T Consensus 332 g~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~---~~~~~~~~--~~~~~~~~~~~~~~~~~ 405 (464)
T 3v7d_B 332 TTIRIWDLENGELMYTL-QGHTALVGLLRLSDKFLVSAAADGSIRGWDAN---DYSRKFSY--HHTNLSAITTFYVSDNI 405 (464)
T ss_dssp SCEEEEETTTTEEEEEE-CCCSSCEEEEEECSSEEEEEETTSEEEEEETT---TCCEEEEE--ECTTCCCEEEEEECSSE
T ss_pred CcEEEEECCCCcEEEEE-eCCCCcEEEEEEcCCEEEEEeCCCcEEEEECC---CCceeeee--cCCCCccEEEEEeCCCE
Confidence 78999998766533222 2467889988865556665543 678887753 22221111 11222344566667888
Q ss_pred EEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCce-EEEEccCCcEEEE
Q 001387 880 IVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDI-YLGAENNFNLFTV 936 (1088)
Q Consensus 880 I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~-~l~~D~~gnl~~l 936 (1088)
+++|. ...+. -|+.+.+++...-.-.....+.++.+- ++. +++++.+|..++.
T Consensus 406 l~~~~-dg~i~--iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 406 LVSGS-ENQFN--IYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp EEEEE-TTEEE--EEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred EEEec-CCeEE--EEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence 88888 44444 467666666542223345667777774 444 4555666655443
No 23
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.92 E-value=0.014 Score=65.09 Aligned_cols=294 Identities=12% Similarity=0.076 Sum_probs=158.8
Q ss_pred CcEEEEEEC--CCEEEEEECCCeEEEEEEcCcEEEEEeec-cCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEEC
Q 001387 489 YSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHA-QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL 565 (1088)
Q Consensus 489 ~~I~~a~~~--~~~lvv~~~~~~l~~~~~~~~~l~~~~~~-~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l 565 (1088)
..|.+.+.+ +..++.+..++.+..+.++.+++.....+ .....|.++++.+ ...+++.|.. ++.+.+|++
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~------~~~~l~~~~~-dg~i~vwd~ 81 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP------DSNRIVTCGT-DRNAYVWTL 81 (372)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET------TTTEEEEEET-TSCEEEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeC------CCCEEEEEcC-CCeEEEEEC
Confidence 356666654 44666665678888888877654333322 2456799999865 2568888877 999999999
Q ss_pred CCCCceEEecC-CCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecC-ccceeEEEEEeCCceEE
Q 001387 566 PDLNLITKEHL-GGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLG-TQPITLRTFSSKNTTHV 643 (1088)
Q Consensus 566 ~~l~~~~~~~l-~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG-~~pv~l~~~~~~~~~~v 643 (1088)
.+.+......+ .....+.++.+.. +..+|++|..||.+..|.++.... ....+....+ ..++.-..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~-~~~~~~~~~~~~~~i~~~~~~------- 151 (372)
T 1k8k_C 82 KGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQEND-WWVCKHIKKPIRSTVLSLDWH------- 151 (372)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTT-EEEEEEECTTCCSCEEEEEEC-------
T ss_pred CCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCc-ceeeeeeecccCCCeeEEEEc-------
Confidence 76543322222 1122344554432 457899999999999998875421 0001111111 1122111111
Q ss_pred EEecCCceEEEe-cCCcEEEeeccccccee---eeccCCCCCCCeEEEEeCCeEEEEEEcCCCCeEEEEEe-CCCccCeE
Q 001387 644 FAASDRPTVIYS-SNKKLLYSNVNLKEVSH---MCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIP-LGEHPRRI 718 (1088)
Q Consensus 644 ~~~~~~p~~i~~-~~~~~~~~~l~~~~i~~---~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~~~~~~i~-l~~tp~~i 718 (1088)
.+..+++.. .++.+.+..+....... ..++.. .. ...-..+.+. -...+..+
T Consensus 152 ---~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-~~-------------------~~~~~~~~~~~~~~~v~~~ 208 (372)
T 1k8k_C 152 ---PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGS-KM-------------------PFGELMFESSSSCGWVHGV 208 (372)
T ss_dssp ---TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBS-CC-------------------CTTCEEEECCCCSSCEEEE
T ss_pred ---CCCCEEEEEcCCCCEEEEEccccccccccccccccc-cc-------------------chhhheEecCCCCCeEEEE
Confidence 111222222 13333333322111000 000000 00 0011222222 23356678
Q ss_pred EEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCC
Q 001387 719 CHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEP 798 (1088)
Q Consensus 719 ~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~ 798 (1088)
+++|+.+.+++++.+ ..|+++|..+++.+..+.... ..+.+++. .. ...+++.|.
T Consensus 209 ~~~~~~~~l~~~~~d----------~~i~i~d~~~~~~~~~~~~~~-~~v~~~~~---~~-~~~~l~~~~---------- 263 (372)
T 1k8k_C 209 CFSANGSRVAWVSHD----------STVCLADADKKMAVATLASET-LPLLAVTF---IT-ESSLVAAGH---------- 263 (372)
T ss_dssp EECSSSSEEEEEETT----------TEEEEEEGGGTTEEEEEECSS-CCEEEEEE---EE-TTEEEEEET----------
T ss_pred EECCCCCEEEEEeCC----------CEEEEEECCCCceeEEEccCC-CCeEEEEE---ec-CCCEEEEEe----------
Confidence 899888877766533 479999998888887776443 34455443 22 245777662
Q ss_pred cceEEEEEEEeC--CeEEEEEE--------------------------------------EEecCceeEeccc--cC---
Q 001387 799 TKGRILVFIVED--GKLQLIAE--------------------------------------KETKGAVYSLNAF--NG--- 833 (1088)
Q Consensus 799 ~~Gri~v~~i~~--~kl~~~~~--------------------------------------~~~~g~v~ai~~~--~g--- 833 (1088)
.|.+++|++.. ++++++.. ..+.++|++++-+ +|
T Consensus 264 -d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~ 342 (372)
T 1k8k_C 264 -DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKC 342 (372)
T ss_dssp -TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSC
T ss_pred -CCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcce
Confidence 36788999987 65544321 1456799999744 33
Q ss_pred eEEEEEC--CEEEEEEe
Q 001387 834 KLLAAIN--QKIQLYKW 848 (1088)
Q Consensus 834 ~Lv~~~g--~~l~v~~~ 848 (1088)
.++++.+ ..|++|++
T Consensus 343 ~~l~s~~~Dg~i~~W~~ 359 (372)
T 1k8k_C 343 SQFCTTGMDGGMSIWDV 359 (372)
T ss_dssp SEEEEEETTSEEEEEEH
T ss_pred eeEEEecCCCceEEEEe
Confidence 4544433 67888776
No 24
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=97.91 E-value=0.011 Score=65.65 Aligned_cols=271 Identities=11% Similarity=0.079 Sum_probs=148.8
Q ss_pred CcEEEEEECC-----CEEEEEECCCeEEEEEEcC-cEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEE
Q 001387 489 YSVNVATANA-----SQVLLATGGGHLVYLEIGD-GILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRI 562 (1088)
Q Consensus 489 ~~I~~a~~~~-----~~lvv~~~~~~l~~~~~~~-~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i 562 (1088)
..|.+.+.++ ..++.+..++.+.++.++. +.............|.++++.+ ...+++.|.. |+.+.+
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~------~~~~l~s~~~-dg~v~i 112 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD------DGSKVFTASC-DKTAKM 112 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT------TSSEEEEEET-TSEEEE
T ss_pred CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc------CCCEEEEEcC-CCcEEE
Confidence 4688888764 3556666678888888875 3322121123456799999975 2568888877 999999
Q ss_pred EECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceE
Q 001387 563 FSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTH 642 (1088)
Q Consensus 563 ~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~ 642 (1088)
|++.+.+.+..... .....++.+....+..+|+.|..||.+..|.+... .. ............+.. .....
T Consensus 113 wd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~--~~~~~~~~~~~~~~~---~~~~~ 183 (368)
T 3mmy_A 113 WDLSSNQAIQIAQH--DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS--NP--MMVLQLPERCYCADV---IYPMA 183 (368)
T ss_dssp EETTTTEEEEEEEC--SSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS--SC--SEEEECSSCEEEEEE---ETTEE
T ss_pred EEcCCCCceeeccc--cCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC--cE--EEEEecCCCceEEEe---cCCee
Confidence 99987555432221 23445665533345578999999999998876532 11 111111211111211 12233
Q ss_pred EEEecCCceEEEecC-CcEEEeecc---cccceeeeccCCCC-CCCeEEEEe-CCeEEEEEEcCCCC-eEEEEEeCCC--
Q 001387 643 VFAASDRPTVIYSSN-KKLLYSNVN---LKEVSHMCPFNSAA-FPDSLAIAK-EGELTIGTIDDIQK-LHIRSIPLGE-- 713 (1088)
Q Consensus 643 v~~~~~~p~~i~~~~-~~~~~~~l~---~~~i~~~~~f~~~~-~~~~l~~~~-~~~l~i~~l~~~~~-~~~~~i~l~~-- 713 (1088)
+.+.++....++..+ +...+..+. .......+-+.... .+++++... ++.+.+..+..... .....+....
T Consensus 184 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 263 (368)
T 3mmy_A 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263 (368)
T ss_dssp EEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC
T ss_pred EEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecc
Confidence 334444444444322 111111111 11122222222211 233455544 78888888876532 1222222221
Q ss_pred -----------ccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCce
Q 001387 714 -----------HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 782 (1088)
Q Consensus 714 -----------tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~ 782 (1088)
.+..++++|+.+.++.++.+ +.|++.|..+++.+..+.- ....+.++ .+.. ...
T Consensus 264 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~-~~~~v~~~---~~s~-~g~ 328 (368)
T 3mmy_A 264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSD----------GRFSFWDKDARTKLKTSEQ-LDQPISAC---CFNH-NGN 328 (368)
T ss_dssp ----CCCEEECCEEEEEECTTTCCEEEEETT----------SCEEEEETTTTEEEEECCC-CSSCEEEE---EECT-TSS
T ss_pred cccccccccccceEEEEEecCCCEEEEEccC----------CeEEEEECCCCcEEEEecC-CCCCceEE---EECC-CCC
Confidence 47789999988877766543 4699999998888765442 23344444 3443 356
Q ss_pred EEEEEeee
Q 001387 783 YYCVGTAY 790 (1088)
Q Consensus 783 ~i~VGT~~ 790 (1088)
++++|+..
T Consensus 329 ~l~~~s~d 336 (368)
T 3mmy_A 329 IFAYASSY 336 (368)
T ss_dssp CEEEEECC
T ss_pred eEEEEecc
Confidence 78877753
No 25
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=97.91 E-value=0.016 Score=65.26 Aligned_cols=283 Identities=13% Similarity=0.133 Sum_probs=153.7
Q ss_pred CceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCC------ceEEecCCCCcCceeEEeeee--cCc---eEEE
Q 001387 529 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLN------LITKEHLGGEIIPRSVLLCAF--EGI---SYLL 597 (1088)
Q Consensus 529 ~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~------~~~~~~l~~~~~p~si~~~~~--~~~---~~L~ 597 (1088)
...|.|+++.+ .+++.|.. ||.|.+|++...+ .+.... .......++.+..- .+. .+|+
T Consensus 16 ~~~i~~~~~~~--------~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 16 DADIFSVSACN--------SFTVSCSG-DGYLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp SSCEEEEEECS--------SEEEEEET-TSEEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hcCeEEEEecC--------CeEEEEcC-CCEEEEEECCCcccccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEE
Confidence 56799999853 57788877 9999999997654 332211 11123455555432 013 6788
Q ss_pred EEeCCCcEEEEEEecCCCcccc-ceeeecC-----ccceeEEEEEe---CCceE-EEEecC-CceEEEecCC--------
Q 001387 598 CALGDGHLLNFLLNMKTGELTD-RKKVSLG-----TQPITLRTFSS---KNTTH-VFAASD-RPTVIYSSNK-------- 658 (1088)
Q Consensus 598 vgl~~G~l~~y~~~~~~~~l~~-~~~~~lG-----~~pv~l~~~~~---~~~~~-v~~~~~-~p~~i~~~~~-------- 658 (1088)
.|..||.+..|.+......... .+..... ..++.-..+.. .+... +++.+. ....++.-..
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 165 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 165 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence 8999999999998754210000 1111111 13332222220 12233 333332 2222221111
Q ss_pred cEEEee---c---------ccccceeeeccCCCCCCCeEEE-Ee-CCeEEEEEEcCCCCeEEEEEeC-------CCccCe
Q 001387 659 KLLYSN---V---------NLKEVSHMCPFNSAAFPDSLAI-AK-EGELTIGTIDDIQKLHIRSIPL-------GEHPRR 717 (1088)
Q Consensus 659 ~~~~~~---l---------~~~~i~~~~~f~~~~~~~~l~~-~~-~~~l~i~~l~~~~~~~~~~i~l-------~~tp~~ 717 (1088)
.+.+.+ + ....+.++ .| .++++++ .. ++.+.+..+... -..+++.. ...+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~----~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~h~~~~~~i~~ 238 (397)
T 1sq9_A 166 TLNWSPTLELQGTVESPMTPSQFATSV-DI----SERGLIATGFNNGTVQISELSTL--RPLYNFESQHSMINNSNSIRS 238 (397)
T ss_dssp TTCCCCEEEEEEEECCSSSSCCCCCEE-EE----CTTSEEEEECTTSEEEEEETTTT--EEEEEEECCC---CCCCCEEE
T ss_pred eeeccCcceeeeeeccccCCCCCceEE-EE----CCCceEEEEeCCCcEEEEECCCC--ceeEEEeccccccccCCccce
Confidence 111000 0 01111111 11 1233222 22 577777777643 35566665 667889
Q ss_pred EEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECC------------CCceEeEEEEEEEcCCCceEEE
Q 001387 718 ICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD------------TFEYGCSILSCSFSDDSNVYYC 785 (1088)
Q Consensus 718 i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~------------~~E~v~si~~~~~~~~~~~~i~ 785 (1088)
++++|..+.+++++.+. ..+.|+++|..+.+.+..+.-. ....+.+++ +.. ...+++
T Consensus 239 i~~~~~~~~l~~~~~d~-------~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~-~~~~l~ 307 (397)
T 1sq9_A 239 VKFSPQGSLLAIAHDSN-------SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS---FND-SGETLC 307 (397)
T ss_dssp EEECSSTTEEEEEEEET-------TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEE---ECS-SSSEEE
T ss_pred EEECCCCCEEEEEecCC-------CCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEE---ECC-CCCEEE
Confidence 99999988888776431 1268999999888887776542 234455543 333 345777
Q ss_pred EEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEE-----Ee---------------cCceeEeccccC-----------e
Q 001387 786 VGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEK-----ET---------------KGAVYSLNAFNG-----------K 834 (1088)
Q Consensus 786 VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~-----~~---------------~g~v~ai~~~~g-----------~ 834 (1088)
.|+ ..|.|.+|++...+....... .. .++|++++-..+ .
T Consensus 308 ~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~ 377 (397)
T 1sq9_A 308 SAG----------WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNE 377 (397)
T ss_dssp EEE----------TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSC
T ss_pred EEe----------CCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccc
Confidence 775 348999999876654333321 23 788999886643 3
Q ss_pred EEEEE--CCEEEEEEee
Q 001387 835 LLAAI--NQKIQLYKWM 849 (1088)
Q Consensus 835 Lv~~~--g~~l~v~~~~ 849 (1088)
++++. ...|.+|+++
T Consensus 378 ~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 378 SLCCVCLDRSIRWFREA 394 (397)
T ss_dssp EEEEEETTTEEEEEEEE
T ss_pred eEEEecCCCcEEEEEcC
Confidence 44433 4678887753
No 26
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.88 E-value=0.0056 Score=67.12 Aligned_cols=261 Identities=10% Similarity=0.059 Sum_probs=151.5
Q ss_pred eEEEEeCCeEEEEEEcCCCC-eEEEEE---eCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEE
Q 001387 684 SLAIAKEGELTIGTIDDIQK-LHIRSI---PLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIST 759 (1088)
Q Consensus 684 ~l~~~~~~~l~i~~l~~~~~-~~~~~i---~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~ 759 (1088)
.++...++.+++-.++.... .....+ .-...+..+.++|+.+.+++++.+ +.++++|..+.+....
T Consensus 65 ~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------~~i~~~d~~~~~~~~~ 134 (337)
T 1gxr_A 65 HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA----------STLSIWDLAAPTPRIK 134 (337)
T ss_dssp EEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS----------SEEEEEECCCC--EEE
T ss_pred EEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCC----------CcEEEEECCCCCccee
Confidence 34445577888887765431 122222 234567788999988877776543 4789999877663333
Q ss_pred EECCC-CceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cC-eEE
Q 001387 760 YPLDT-FEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NG-KLL 836 (1088)
Q Consensus 760 ~~~~~-~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g-~Lv 836 (1088)
..+.. ...+.+++ +.. ...++++|+ ..|.+++|++..++..... ....+++++++-- ++ .|+
T Consensus 135 ~~~~~~~~~i~~~~---~~~-~~~~l~~~~----------~dg~v~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~ 199 (337)
T 1gxr_A 135 AELTSSAPACYALA---ISP-DSKVCFSCC----------SDGNIAVWDLHNQTLVRQF-QGHTDGASCIDISNDGTKLW 199 (337)
T ss_dssp EEEECSSSCEEEEE---ECT-TSSEEEEEE----------TTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEE
T ss_pred eecccCCCceEEEE---ECC-CCCEEEEEe----------CCCcEEEEeCCCCceeeee-ecccCceEEEEECCCCCEEE
Confidence 33332 23344443 332 356777776 3478999998765533222 2357788888755 34 444
Q ss_pred EEE-CCEEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEE
Q 001387 837 AAI-NQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSA 915 (1088)
Q Consensus 837 ~~~-g~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~ 915 (1088)
++. ...+++|++. .+ +.............+.....++++++|.....+.++ +....+...+ ......+++
T Consensus 200 ~~~~dg~i~~~d~~---~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~--~~~~~~~~~~--~~~~~~v~~ 270 (337)
T 1gxr_A 200 TGGLDNTVRSWDLR---EG--RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVL--HVNKPDKYQL--HLHESCVLS 270 (337)
T ss_dssp EEETTSEEEEEETT---TT--EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEE--ETTSSCEEEE--CCCSSCEEE
T ss_pred EEecCCcEEEEECC---CC--ceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEE--ECCCCCeEEE--cCCccceeE
Confidence 443 4678887752 11 122111122223333333457799999888887765 5444444333 234556777
Q ss_pred EEEeeCc-eEEEEccCCcEEEEeeCCCCCCcccccceeEEEEEEcCCccceEEeeeeeecCCCCCCCCccEEEEEccccc
Q 001387 916 VEILDDD-IYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGV 994 (1088)
Q Consensus 916 ~~~l~~~-~~l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~~l~~t~~G~ 994 (1088)
+.+-.++ .++.+..+|.+.+++..... .+ .....+..++++.- ......++.++.+|.
T Consensus 271 ~~~~~~~~~l~~~~~dg~i~~~~~~~~~-------~~---~~~~~~~~v~~~~~-----------s~~~~~l~~~~~dg~ 329 (337)
T 1gxr_A 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGA-------SI---FQSKESSSVLSCDI-----------SVDDKYIVTGSGDKK 329 (337)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCC-------EE---EEEECSSCEEEEEE-----------CTTSCEEEEEETTSC
T ss_pred EEECCCCCEEEEecCCCcEEEEECCCCe-------EE---EEecCCCcEEEEEE-----------CCCCCEEEEecCCCe
Confidence 8777655 46677889999999865321 12 22334555655432 113457888899999
Q ss_pred EEEEE
Q 001387 995 IGVIA 999 (1088)
Q Consensus 995 i~~l~ 999 (1088)
|...-
T Consensus 330 i~iw~ 334 (337)
T 1gxr_A 330 ATVYE 334 (337)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 97654
No 27
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.88 E-value=0.0089 Score=67.94 Aligned_cols=272 Identities=13% Similarity=0.149 Sum_probs=141.1
Q ss_pred ceeEEEEeCCCCCCCCCcc-EEEEEEecCCEEEEEEC----CCCCc------eEE--ecCCC-------CcCceeEEeee
Q 001387 530 YEISCLDINPIGENPSYSQ-IAAVGMWTDISVRIFSL----PDLNL------ITK--EHLGG-------EIIPRSVLLCA 589 (1088)
Q Consensus 530 ~~is~l~~~~~~~~~~~~~-~~~vg~w~~~~i~i~~l----~~l~~------~~~--~~l~~-------~~~p~si~~~~ 589 (1088)
..|+|+++.| ... +++.|.. ++.+.+|++ .+.+. ... ..+.. .....++.+.+
T Consensus 46 ~~v~~~~~s~------~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 118 (425)
T 1r5m_A 46 DNIVSSTWNP------LDESILAYGEK-NSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH 118 (425)
T ss_dssp SCCSEEEECS------SCTTEEEEEET-BTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT
T ss_pred CceEEEEECC------CCCcEEEEecC-CceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC
Confidence 5688999975 234 8888887 999999999 65442 111 11110 11233443332
Q ss_pred ecCceEEEEEeCCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEecCCc-eEEEec-CCcEE-Eeecc
Q 001387 590 FEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRP-TVIYSS-NKKLL-YSNVN 666 (1088)
Q Consensus 590 ~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p-~~i~~~-~~~~~-~~~l~ 666 (1088)
+..+|++|..||.+..|. .++... ....-...++.-..+. .+...+++.+... ..++.- .++.. .....
T Consensus 119 --~~~~l~~~~~dg~i~i~~---~~~~~~--~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 190 (425)
T 1r5m_A 119 --DGNSIVTGVENGELRLWN---KTGALL--NVLNFHRAPIVSVKWN-KDGTHIISMDVENVTILWNVISGTVMQHFELK 190 (425)
T ss_dssp --TSSEEEEEETTSCEEEEE---TTSCEE--EEECCCCSCEEEEEEC-TTSSEEEEEETTCCEEEEETTTTEEEEEECCC
T ss_pred --CCCEEEEEeCCCeEEEEe---CCCCee--eeccCCCccEEEEEEC-CCCCEEEEEecCCeEEEEECCCCcEEEEeecc
Confidence 457899999999999987 222211 1111122343322332 2233444444333 333322 22221 11111
Q ss_pred ccc---------------ceeeeccCCCCCCCeEEE-EeCCeEEEEEEcCCCCeEEEEEe-CCCccCeEEEecCCCEEEE
Q 001387 667 LKE---------------VSHMCPFNSAAFPDSLAI-AKEGELTIGTIDDIQKLHIRSIP-LGEHPRRICHQEQSRTFAI 729 (1088)
Q Consensus 667 ~~~---------------i~~~~~f~~~~~~~~l~~-~~~~~l~i~~l~~~~~~~~~~i~-l~~tp~~i~y~~~~~~~~v 729 (1088)
... +.+++ |.. .+.++. ..++.+.+..+...... +.+. -...+..++++|..+.+++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~g~i~~~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 191 ETGGSSINAENHSGDGSLGVDVE-WVD---DDKFVIPGPKGAIFVYQITEKTPT--GKLIGHHGPISVLEFNDTNKLLLS 264 (425)
T ss_dssp ---------------CCCBSCCE-EEE---TTEEEEECGGGCEEEEETTCSSCS--EEECCCSSCEEEEEEETTTTEEEE
T ss_pred ccCccceeeccccCCcceeeEEE-EcC---CCEEEEEcCCCeEEEEEcCCCcee--eeeccCCCceEEEEECCCCCEEEE
Confidence 111 11111 111 122333 33677777777654322 2232 2345678899998887766
Q ss_pred EEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEe
Q 001387 730 CSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE 809 (1088)
Q Consensus 730 ~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~ 809 (1088)
++.+ ..|+++|..+.+.+..+.- ....+.+++ +..++ +++.|+ ..|.|.+|++.
T Consensus 265 ~~~d----------~~i~i~d~~~~~~~~~~~~-~~~~i~~~~---~~~~~--~l~~~~----------~d~~i~i~d~~ 318 (425)
T 1r5m_A 265 ASDD----------GTLRIWHGGNGNSQNCFYG-HSQSIVSAS---WVGDD--KVISCS----------MDGSVRLWSLK 318 (425)
T ss_dssp EETT----------SCEEEECSSSBSCSEEECC-CSSCEEEEE---EETTT--EEEEEE----------TTSEEEEEETT
T ss_pred EcCC----------CEEEEEECCCCccceEecC-CCccEEEEE---ECCCC--EEEEEe----------CCCcEEEEECC
Confidence 6533 4688998877766555532 233445443 33333 777665 34799999987
Q ss_pred CCeEEEEEEEEecCceeEeccc-cC-eEEEEE-CCEEEEEEee
Q 001387 810 DGKLQLIAEKETKGAVYSLNAF-NG-KLLAAI-NQKIQLYKWM 849 (1088)
Q Consensus 810 ~~kl~~~~~~~~~g~v~ai~~~-~g-~Lv~~~-g~~l~v~~~~ 849 (1088)
.++..... ....++|++++-- ++ .|+++. +..|++|++.
T Consensus 319 ~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 319 QNTLLALS-IVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp TTEEEEEE-ECTTCCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred CCcEeEec-ccCCccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 66543222 2346788888754 34 444444 3678998864
No 28
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.062 Score=59.39 Aligned_cols=288 Identities=11% Similarity=0.110 Sum_probs=157.7
Q ss_pred CcEEEEEEC--CCEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECC
Q 001387 489 YSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLP 566 (1088)
Q Consensus 489 ~~I~~a~~~--~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~ 566 (1088)
..|.+.+.+ +..++.+..++.+....+.+++....- ......|.++++.+ ...+++.+.. |+.+.+|++.
T Consensus 33 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~------~~~~l~s~~~-dg~i~iwd~~ 104 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL-DGHTGTIWSIDVDC------FTKYCVTGSA-DYSIKLWDVS 104 (369)
T ss_dssp SCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEE-CCCSSCEEEEEECT------TSSEEEEEET-TTEEEEEETT
T ss_pred ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhh-hhcCCcEEEEEEcC------CCCEEEEEeC-CCeEEEEECC
Confidence 356666654 446666666777777776654432211 12356789999865 2567888877 9999999998
Q ss_pred CCCceEEecCCCCcCceeEEeeeecCceEEEEEeCC-----CcEEEEEEecCCCccccc-------eeee--cCccceeE
Q 001387 567 DLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGD-----GHLLNFLLNMKTGELTDR-------KKVS--LGTQPITL 632 (1088)
Q Consensus 567 ~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~-----G~l~~y~~~~~~~~l~~~-------~~~~--lG~~pv~l 632 (1088)
+.+.+...... ..+.++.+.. +..+++++..+ |.+..|.+.......... .... -+..++.-
T Consensus 105 ~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (369)
T 3zwl_B 105 NGQCVATWKSP--VPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV 180 (369)
T ss_dssp TCCEEEEEECS--SCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred CCcEEEEeecC--CCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence 76665433322 3444554442 45788889888 999999987543211000 0000 01112222
Q ss_pred EEEEeCCceEEEEecCCceE-EEecC--CcEE-EeecccccceeeeccCCCCCCCeEEEEe-CCeEEEEEEcCCCCeEEE
Q 001387 633 RTFSSKNTTHVFAASDRPTV-IYSSN--KKLL-YSNVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIR 707 (1088)
Q Consensus 633 ~~~~~~~~~~v~~~~~~p~~-i~~~~--~~~~-~~~l~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~ 707 (1088)
..+. .+...+++.+..-.+ ++.-+ ++.. ........+.+++ |+. ....++..+ ++.+.+-.+.... ..+
T Consensus 181 ~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~-~~~--~~~~l~~~~~d~~i~v~d~~~~~--~~~ 254 (369)
T 3zwl_B 181 AGWS-TKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQ-FSP--DLTYFITSSRDTNSFLVDVSTLQ--VLK 254 (369)
T ss_dssp EEEC-GGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEE-ECT--TSSEEEEEETTSEEEEEETTTCC--EEE
T ss_pred EEEc-CCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEE-ECC--CCCEEEEecCCceEEEEECCCCc--eee
Confidence 2221 122233333333322 22222 1211 1111222333322 221 122344444 6778887776533 455
Q ss_pred EEeCCCccCeEEEecCCCEEEEEEeecC----CCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceE
Q 001387 708 SIPLGEHPRRICHQEQSRTFAICSLKNQ----SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVY 783 (1088)
Q Consensus 708 ~i~l~~tp~~i~y~~~~~~~~v~~~~~~----~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~ 783 (1088)
.+.....+..++++|..+.+++++.+.. ..........++++|..+.+.+..+.-. ...+.++. +.. ...+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~v~~~~---~s~-~~~~ 329 (369)
T 3zwl_B 255 KYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH-FGPLNTVA---ISP-QGTS 329 (369)
T ss_dssp EEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECC-SSCEEEEE---ECT-TSSE
T ss_pred eecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecc-cCcEEEEE---ECC-CCCE
Confidence 5666777888999999998888875431 0111123347899999888887766433 23444443 333 3467
Q ss_pred EEEEeeeeCCCCCCCcceEEEEEEEe
Q 001387 784 YCVGTAYVLPEENEPTKGRILVFIVE 809 (1088)
Q Consensus 784 i~VGT~~~~~~e~~~~~Gri~v~~i~ 809 (1088)
++.|+ ..|.|.+|++.
T Consensus 330 l~s~~----------~dg~v~iw~~~ 345 (369)
T 3zwl_B 330 YASGG----------EDGFIRLHHFE 345 (369)
T ss_dssp EEEEE----------TTSEEEEEEEC
T ss_pred EEEEc----------CCCeEEEEECc
Confidence 77775 34899999987
No 29
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=97.83 E-value=0.013 Score=63.45 Aligned_cols=272 Identities=15% Similarity=0.142 Sum_probs=150.3
Q ss_pred CceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEE
Q 001387 529 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNF 608 (1088)
Q Consensus 529 ~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y 608 (1088)
...|+|+++ + ...+++.|.. ||.+.+|++.+.+........ .....++.+.+ +..+|++|..||.+..|
T Consensus 18 ~~~v~~~~~-~------~~~~l~s~~~-dg~v~vw~~~~~~~~~~~~~~-~~~v~~~~~~~--~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 18 DQDVRDVVA-V------DDSKVASVSR-DGTVRLWSKDDQWLGTVVYTG-QGFLNSVCYDS--EKELLLFGGKDTMINGV 86 (313)
T ss_dssp SSCEEEEEE-E------ETTEEEEEET-TSEEEEEEESSSEEEEEEEEC-SSCEEEEEEET--TTTEEEEEETTSCEEEE
T ss_pred CCCcEEEEe-c------CCCEEEEEEc-CCcEEEEECCCCEEEEEeecC-CccEEEEEECC--CCCEEEEecCCCeEEEE
Confidence 467889988 3 2567888877 999999999765443221111 12344554443 45789999999999988
Q ss_pred EEecCCCccccceeeecCccceeEEEEEeCCceEEEEecCCceEEEecCCcEE-EeecccccceeeeccCCCCCCCeEEE
Q 001387 609 LLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLL-YSNVNLKEVSHMCPFNSAAFPDSLAI 687 (1088)
Q Consensus 609 ~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~i~~~~~~~~-~~~l~~~~i~~~~~f~~~~~~~~l~~ 687 (1088)
.+...... .......-...++.-..+ + ...+++.+....+...+.++.. ....+...+..++-... .++.++.
T Consensus 87 ~~~~~~~~-~~~~~~~~~~~~i~~~~~--~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~ 160 (313)
T 3odt_A 87 PLFATSGE-DPLYTLIGHQGNVCSLSF--Q-DGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSF--SENKFLT 160 (313)
T ss_dssp ETTCCTTS-CC-CEECCCSSCEEEEEE--E-TTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEET--TTTEEEE
T ss_pred EeeecCCC-CcccchhhcccCEEEEEe--c-CCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccC--CCCEEEE
Confidence 87543210 111111112233322222 1 2344444444444333333322 11222233433332211 1234444
Q ss_pred Ee-CCeEEEEEEcCCCCeEEEEEe--CCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCC
Q 001387 688 AK-EGELTIGTIDDIQKLHIRSIP--LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDT 764 (1088)
Q Consensus 688 ~~-~~~l~i~~l~~~~~~~~~~i~--l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~ 764 (1088)
.. ++.+.+.. ..-..+.+. ....+..++++|..+ +++++.+ +.++++|..+++.+..+.-..
T Consensus 161 ~~~d~~i~i~d----~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d----------g~i~i~d~~~~~~~~~~~~~~ 225 (313)
T 3odt_A 161 ASADKTIKLWQ----NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSND----------GLIKLVDMHTGDVLRTYEGHE 225 (313)
T ss_dssp EETTSCEEEEE----TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETT----------SEEEEEETTTCCEEEEEECCS
T ss_pred EECCCCEEEEe----cCceEEEEeccCcccEEEEEEcCCCe-EEEccCC----------CeEEEEECCchhhhhhhhcCC
Confidence 44 67777766 122333333 445677888988877 4444322 579999999888887776433
Q ss_pred CceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cCeEEE-EECCE
Q 001387 765 FEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLA-AINQK 842 (1088)
Q Consensus 765 ~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g~Lv~-~~g~~ 842 (1088)
..+.+++ +..++ .++.|+ ..|.|.+|++..++..... ....++|++++-. ++++++ +..+.
T Consensus 226 -~~i~~~~---~~~~~--~l~~~~----------~dg~v~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~dg~ 288 (313)
T 3odt_A 226 -SFVYCIK---LLPNG--DIVSCG----------EDRTVRIWSKENGSLKQVI-TLPAISIWSVDCMSNGDIIVGSSDNL 288 (313)
T ss_dssp -SCEEEEE---ECTTS--CEEEEE----------TTSEEEEECTTTCCEEEEE-ECSSSCEEEEEECTTSCEEEEETTSC
T ss_pred -ceEEEEE---EecCC--CEEEEe----------cCCEEEEEECCCCceeEEE-eccCceEEEEEEccCCCEEEEeCCCc
Confidence 3344443 44433 366665 3589999998766543332 2346688888855 455554 44478
Q ss_pred EEEEEee
Q 001387 843 IQLYKWM 849 (1088)
Q Consensus 843 l~v~~~~ 849 (1088)
|++|+++
T Consensus 289 i~iw~~~ 295 (313)
T 3odt_A 289 VRIFSQE 295 (313)
T ss_dssp EEEEESC
T ss_pred EEEEeCC
Confidence 8998863
No 30
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=97.83 E-value=0.016 Score=63.63 Aligned_cols=279 Identities=13% Similarity=0.121 Sum_probs=141.4
Q ss_pred CceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCce---EEecCCC-CcCceeEEeeeecCceEEEEEeCCCc
Q 001387 529 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLI---TKEHLGG-EIIPRSVLLCAFEGISYLLCALGDGH 604 (1088)
Q Consensus 529 ~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~---~~~~l~~-~~~p~si~~~~~~~~~~L~vgl~~G~ 604 (1088)
...|+|+++.|- .+.+++-|.. |++|+||++...+.. ....+.. ...+.++.+. .+..+|+.|..||.
T Consensus 38 ~~~V~~v~~sp~-----~~~~l~S~s~-D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s--~dg~~l~s~~~d~~ 109 (340)
T 4aow_A 38 NGWVTQIATTPQ-----FPDMILSASR-DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS--SDGQFALSGSWDGT 109 (340)
T ss_dssp SSCEEEEEECTT-----CTTEEEEEET-TSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSE
T ss_pred cCCEEEEEEeCC-----CCCEEEEEcC-CCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEEC--CCCCEEEEEccccc
Confidence 467999999752 2467777777 999999998753321 1122221 1233444443 24578899999999
Q ss_pred EEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEec-CCceEEEecCCcEEEe-ecc-cccceeeeccCCCCC
Q 001387 605 LLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAAS-DRPTVIYSSNKKLLYS-NVN-LKEVSHMCPFNSAAF 681 (1088)
Q Consensus 605 l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~-~~p~~i~~~~~~~~~~-~l~-~~~i~~~~~f~~~~~ 681 (1088)
+..+...... . .........++....+ ......++..+ +....++...+..... ... .........|.....
T Consensus 110 i~~~~~~~~~--~--~~~~~~~~~~~~~~~~-~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 184 (340)
T 4aow_A 110 LRLWDLTTGT--T--TRRFVGHTKDVLSVAF-SSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS 184 (340)
T ss_dssp EEEEETTTTE--E--EEEEECCSSCEEEEEE-CTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS
T ss_pred ceEEeecccc--e--eeeecCCCCceeEEEE-eecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC
Confidence 8877644321 1 1111111122222222 11222233333 3333333222221111 111 111112222322211
Q ss_pred CCeEEEEe-CCeEEEEEEcCCCCeEEEEEe-CCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEE
Q 001387 682 PDSLAIAK-EGELTIGTIDDIQKLHIRSIP-LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIST 759 (1088)
Q Consensus 682 ~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~-l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~ 759 (1088)
...++... ++.+++-.+.... ..+.+. -...+..++++|+.+.++.++.+ ..+++.|..+++.+..
T Consensus 185 ~~~~~s~~~d~~i~i~d~~~~~--~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D----------g~i~iwd~~~~~~~~~ 252 (340)
T 4aow_A 185 NPIIVSCGWDKLVKVWNLANCK--LKTNHIGHTGYLNTVTVSPDGSLCASGGKD----------GQAMLWDLNEGKHLYT 252 (340)
T ss_dssp SCEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECTTSSEEEEEETT----------CEEEEEETTTTEEEEE
T ss_pred CcEEEEEcCCCEEEEEECCCCc--eeeEecCCCCcEEEEEECCCCCEEEEEeCC----------CeEEEEEeccCceeee
Confidence 22233333 5667776665432 223332 23456788999998877766543 5799999999888776
Q ss_pred EECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEE--------EEEEEecCceeEeccc
Q 001387 760 YPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQL--------IAEKETKGAVYSLNAF 831 (1088)
Q Consensus 760 ~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~--------~~~~~~~g~v~ai~~~ 831 (1088)
+.- .+.+.+++ +.. +. +++.|. ..|.|.+|++..+.+.. .......++|++++--
T Consensus 253 ~~~--~~~v~~~~---~~~-~~-~~~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 315 (340)
T 4aow_A 253 LDG--GDIINALC---FSP-NR-YWLCAA----------TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWS 315 (340)
T ss_dssp EEC--SSCEEEEE---ECS-SS-SEEEEE----------ETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEEC
T ss_pred ecC--CceEEeee---cCC-CC-ceeecc----------CCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEEC
Confidence 654 34454443 332 23 344443 23678888876543221 1123457789888744
Q ss_pred -cCe-EEEEE-CCEEEEEEee
Q 001387 832 -NGK-LLAAI-NQKIQLYKWM 849 (1088)
Q Consensus 832 -~g~-Lv~~~-g~~l~v~~~~ 849 (1088)
+|. |+.|. .+.|++|+++
T Consensus 316 ~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 316 ADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp TTSSEEEEEETTSCEEEEEEE
T ss_pred CCCCEEEEEeCCCEEEEEeCC
Confidence 444 44433 2678887763
No 31
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.83 E-value=0.16 Score=63.44 Aligned_cols=135 Identities=16% Similarity=0.143 Sum_probs=80.6
Q ss_pred EEEEecCCcceeeeeeCCCCCcEEEEEEC--CCEEEEEECCCeEEEEEEcCc-EEEEEeeccCCceeEEEEeCCCCCCCC
Q 001387 469 VRLVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLATGGGHLVYLEIGDG-ILTEVKHAQLEYEISCLDINPIGENPS 545 (1088)
Q Consensus 469 i~l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~~~~~l~~~~~~~~-~l~~~~~~~l~~~is~l~~~~~~~~~~ 545 (1088)
|++.+..+++.+..+.. ....|.+.+.+ +..++.+..++.+....++.+ ..... .......|.|+++.|.
T Consensus 79 i~vw~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~~~v~~~~~~p~----- 151 (814)
T 3mkq_A 79 IRVFNYNTGEKVVDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-FEGHEHFVMCVAFNPK----- 151 (814)
T ss_dssp EEEEETTTCCEEEEEEC-CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE-EECCSSCEEEEEEETT-----
T ss_pred EEEEECCCCcEEEEEec-CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE-EcCCCCcEEEEEEEcC-----
Confidence 44455444334444332 22357776654 446676767788888777654 33222 1223467889988641
Q ss_pred CccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEe
Q 001387 546 YSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLN 611 (1088)
Q Consensus 546 ~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~ 611 (1088)
....++.|.. ++.+.+|++.+.+...............+.+....+..+|++|..||.+..|...
T Consensus 152 ~~~~l~~~~~-dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 216 (814)
T 3mkq_A 152 DPSTFASGCL-DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216 (814)
T ss_dssp EEEEEEEEET-TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT
T ss_pred CCCEEEEEeC-CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 2457777777 9999999997644433222221123345544443356789999999999888654
No 32
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=97.82 E-value=0.044 Score=63.24 Aligned_cols=113 Identities=16% Similarity=0.120 Sum_probs=76.8
Q ss_pred CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCC------------------------CceE
Q 001387 713 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDT------------------------FEYG 768 (1088)
Q Consensus 713 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~------------------------~E~v 768 (1088)
..+..++++ +.+.++.++.+ ..|++.|..+++.+..+.... ...+
T Consensus 242 ~~v~~~~~s-d~~~l~s~~~d----------~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 310 (450)
T 2vdu_B 242 HFVSSICCG-KDYLLLSAGGD----------DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAV 310 (450)
T ss_dssp SCEEEEEEC-STTEEEEEESS----------SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCE
T ss_pred CceEEEEEC-CCCEEEEEeCC----------CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEE
Confidence 345677888 66666655532 479999998888887776421 1223
Q ss_pred eEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEE--e-CCeEEEEEEEEecCceeEeccccCeEEEEECCE---
Q 001387 769 CSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIV--E-DGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK--- 842 (1088)
Q Consensus 769 ~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i--~-~~kl~~~~~~~~~g~v~ai~~~~g~Lv~~~g~~--- 842 (1088)
.++ .+.. ...++++|+. ..|.|++|++ . +++++.+......++|.+++-..+.++++.++.
T Consensus 311 ~~i---~~~~-~~~~l~~~~~---------~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~ 377 (450)
T 2vdu_B 311 SKI---IKSK-NLPFVAFFVE---------ATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESS 377 (450)
T ss_dssp EEE---EECS-SSSEEEEEET---------TCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECCTTCC
T ss_pred EEE---EEeC-CCCEEEEEEC---------CCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEecccCC
Confidence 333 2332 3567777762 3479999999 3 467888887777799999987777787777542
Q ss_pred ------EEEEEee
Q 001387 843 ------IQLYKWM 849 (1088)
Q Consensus 843 ------l~v~~~~ 849 (1088)
|.+|.++
T Consensus 378 ~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 378 GVQKNFAKFIEYN 390 (450)
T ss_dssp SSCCCSEEEEEEE
T ss_pred CCCCcceEEEEEE
Confidence 6777774
No 33
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.062 Score=57.86 Aligned_cols=271 Identities=14% Similarity=0.099 Sum_probs=147.1
Q ss_pred CcEEEEEE-CCCEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCC
Q 001387 489 YSVNVATA-NASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD 567 (1088)
Q Consensus 489 ~~I~~a~~-~~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~ 567 (1088)
..|.+.+. ++..++.+..++.+.+..+..++..... ......|.++++.+ ...++++|.. ++.+.+|++.+
T Consensus 19 ~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~~v~~~~~~~------~~~~l~~~~~-dg~i~~~~~~~ 90 (313)
T 3odt_A 19 QDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVV-YTGQGFLNSVCYDS------EKELLLFGGK-DTMINGVPLFA 90 (313)
T ss_dssp SCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEE-EECSSCEEEEEEET------TTTEEEEEET-TSCEEEEETTC
T ss_pred CCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEe-ecCCccEEEEEECC------CCCEEEEecC-CCeEEEEEeee
Confidence 35666553 4667777777888888888765433321 12356789999865 2578888887 99999999865
Q ss_pred CC---ceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEE
Q 001387 568 LN---LITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVF 644 (1088)
Q Consensus 568 l~---~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~ 644 (1088)
.. .+... ........++.. +..+++.|..||.+..|. . +.. .........++.-..+...+.+.++
T Consensus 91 ~~~~~~~~~~-~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d--~--~~~--~~~~~~~~~~v~~~~~~~~~~~~l~ 159 (313)
T 3odt_A 91 TSGEDPLYTL-IGHQGNVCSLSF----QDGVVISGSWDKTAKVWK--E--GSL--VYNLQAHNASVWDAKVVSFSENKFL 159 (313)
T ss_dssp CTTSCC-CEE-CCCSSCEEEEEE----ETTEEEEEETTSEEEEEE--T--TEE--EEEEECCSSCEEEEEEEETTTTEEE
T ss_pred cCCCCcccch-hhcccCEEEEEe----cCCEEEEEeCCCCEEEEc--C--CcE--EEecccCCCceeEEEEccCCCCEEE
Confidence 32 22111 111122334433 245889999999999987 1 111 1111222333322222121233444
Q ss_pred EecCCceEEEecCCc-EE-EeecccccceeeeccCCCCCCCeEEEE-eCCeEEEEEEcCCCCeEEEEEe-CCCccCeEEE
Q 001387 645 AASDRPTVIYSSNKK-LL-YSNVNLKEVSHMCPFNSAAFPDSLAIA-KEGELTIGTIDDIQKLHIRSIP-LGEHPRRICH 720 (1088)
Q Consensus 645 ~~~~~p~~i~~~~~~-~~-~~~l~~~~i~~~~~f~~~~~~~~l~~~-~~~~l~i~~l~~~~~~~~~~i~-l~~tp~~i~y 720 (1088)
+.+....+...+.++ .. +.......+.+++ |+.. ..++.. .++.+.+..+.... ..+++. -...+..+++
T Consensus 160 ~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~-~~~~---~~~~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~ 233 (313)
T 3odt_A 160 TASADKTIKLWQNDKVIKTFSGIHNDVVRHLA-VVDD---GHFISCSNDGLIKLVDMHTGD--VLRTYEGHESFVYCIKL 233 (313)
T ss_dssp EEETTSCEEEEETTEEEEEECSSCSSCEEEEE-EEET---TEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEE
T ss_pred EEECCCCEEEEecCceEEEEeccCcccEEEEE-EcCC---CeEEEccCCCeEEEEECCchh--hhhhhhcCCceEEEEEE
Confidence 444333333222222 11 1111222232222 2211 124433 36778887776543 334444 3456778999
Q ss_pred ecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcc
Q 001387 721 QEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTK 800 (1088)
Q Consensus 721 ~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~ 800 (1088)
+|... ++.++.+ +.|+++|..+.+.+..+..... .+.++. +..+++ +++|+ ..
T Consensus 234 ~~~~~-l~~~~~d----------g~v~iwd~~~~~~~~~~~~~~~-~i~~~~---~~~~~~--~~~~~----------~d 286 (313)
T 3odt_A 234 LPNGD-IVSCGED----------RTVRIWSKENGSLKQVITLPAI-SIWSVD---CMSNGD--IIVGS----------SD 286 (313)
T ss_dssp CTTSC-EEEEETT----------SEEEEECTTTCCEEEEEECSSS-CEEEEE---ECTTSC--EEEEE----------TT
T ss_pred ecCCC-EEEEecC----------CEEEEEECCCCceeEEEeccCc-eEEEEE---EccCCC--EEEEe----------CC
Confidence 98874 4333322 5799999999888887766543 444443 443333 44454 35
Q ss_pred eEEEEEEEeCC
Q 001387 801 GRILVFIVEDG 811 (1088)
Q Consensus 801 Gri~v~~i~~~ 811 (1088)
|.|.+|++.++
T Consensus 287 g~i~iw~~~~~ 297 (313)
T 3odt_A 287 NLVRIFSQEKS 297 (313)
T ss_dssp SCEEEEESCGG
T ss_pred CcEEEEeCCCC
Confidence 78999998744
No 34
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=97.79 E-value=0.047 Score=59.78 Aligned_cols=246 Identities=14% Similarity=0.067 Sum_probs=134.6
Q ss_pred CeEEEEEEcCC--CCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeC---CCceEEEEEECCCC
Q 001387 691 GELTIGTIDDI--QKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDD---QTFEFISTYPLDTF 765 (1088)
Q Consensus 691 ~~l~i~~l~~~--~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~---~t~~~i~~~~~~~~ 765 (1088)
+.+.+..++.. ..-....++.+..|..++++|+.+.++++.... ..+.++|. .+.+.+..+. ..
T Consensus 60 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~---------~~i~~~d~~~~~~~~~~~~~~--~~ 128 (343)
T 1ri6_A 60 FRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNA---------GNVSVTRLEDGLPVGVVDVVE--GL 128 (343)
T ss_dssp TEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTT---------TEEEEEEEETTEEEEEEEEEC--CC
T ss_pred CeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCC---------CeEEEEECCCCcccccccccc--CC
Confidence 45566566522 222455677777899999999998776665422 45777776 3334444333 33
Q ss_pred ceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeC-CeEEEEE--EEEe--cCceeEeccc-cC-eEEEE
Q 001387 766 EYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVED-GKLQLIA--EKET--KGAVYSLNAF-NG-KLLAA 838 (1088)
Q Consensus 766 E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~-~kl~~~~--~~~~--~g~v~ai~~~-~g-~Lv~~ 838 (1088)
..+.++. +..++ .+++++.. ..|+|++|++.. ++++.+. .... ...+.+++-- +| +|+++
T Consensus 129 ~~~~~~~---~s~dg-~~l~~~~~---------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~ 195 (343)
T 1ri6_A 129 DGCHSAN---ISPDN-RTLWVPAL---------KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV 195 (343)
T ss_dssp TTBCCCE---ECTTS-SEEEEEEG---------GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEE
T ss_pred CCceEEE---ECCCC-CEEEEecC---------CCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEE
Confidence 3344443 33333 45555541 347899999986 7776654 3333 2355555433 34 46665
Q ss_pred E--CCEEEEEEeeeccCccccccc-ccccc----cceEEEEEEE--eCCEEEEEeccc-cEEEEEEeccCCeEEEEeccC
Q 001387 839 I--NQKIQLYKWMLRDDGTRELQS-ECGHH----GHILALYVQT--RGDFIVVGDLMK-SISLLIYKHEEGAIEERARDY 908 (1088)
Q Consensus 839 ~--g~~l~v~~~~~~~~~~~~L~~-~~~~~----~~~~~~~l~~--~~~~I~vgD~~~-Sv~~~~~~~~~~~l~~~~~D~ 908 (1088)
. ++.+.+|+++.. .+..+... ..... ....+..+.. .++++++++..+ .+.++..+.+..++..+..-.
T Consensus 196 ~~~~~~i~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~ 274 (343)
T 1ri6_A 196 NELNSSVDVWELKDP-HGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP 274 (343)
T ss_dssp ETTTTEEEEEESSCT-TSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE
T ss_pred eCCCCEEEEEEecCC-CCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec
Confidence 4 478888886421 22211111 11011 1112333444 466888877544 466655543344454443322
Q ss_pred CCceeEEEEEeeCc-eEEEEc-cCCcEEEEeeCCCCCCcccccceeEEEEEEcCCccceEE
Q 001387 909 NANWMSAVEILDDD-IYLGAE-NNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFR 967 (1088)
Q Consensus 909 ~~~~v~~~~~l~~~-~~l~~D-~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~ 967 (1088)
....+.++.+-.++ .+++++ .++.+.+++.+++. .++.....+..|..+..+.
T Consensus 275 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~------g~~~~~~~~~~g~~p~~i~ 329 (343)
T 1ri6_A 275 TETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQ------GLLHEKGRYAVGQGPMWVV 329 (343)
T ss_dssp CSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTT------TEEEEEEEEECSSSCCEEE
T ss_pred CCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCC------ceeeEccccccCCCCeeEE
Confidence 22224445554444 356666 57889999887532 3566777888888777664
No 35
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=97.77 E-value=0.084 Score=58.61 Aligned_cols=296 Identities=13% Similarity=0.128 Sum_probs=157.1
Q ss_pred ceEEEEEeC----CCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEecCC-----ceEEEe-c-C-CcE
Q 001387 593 ISYLLCALG----DGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDR-----PTVIYS-S-N-KKL 660 (1088)
Q Consensus 593 ~~~L~vgl~----~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~-----p~~i~~-~-~-~~~ 660 (1088)
..++++|+- ++.+..|.++..++.+...... -+..|..+. + ..+...+++.+.. ...++. + + +.+
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~-~-spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~ 89 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLI-P-SADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL 89 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEE-E-CTTSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEE-E-CCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence 467888864 5689999999887776554433 344453332 2 2234556666652 222222 2 2 444
Q ss_pred EEe-ec--ccccceeeeccCCCCCCCeEEEEe--CCeEEEEEEcCCCCe--EEEEEe-CCCc----------cCeEEEec
Q 001387 661 LYS-NV--NLKEVSHMCPFNSAAFPDSLAIAK--EGELTIGTIDDIQKL--HIRSIP-LGEH----------PRRICHQE 722 (1088)
Q Consensus 661 ~~~-~l--~~~~i~~~~~f~~~~~~~~l~~~~--~~~l~i~~l~~~~~~--~~~~i~-l~~t----------p~~i~y~~ 722 (1088)
... .. .......++. -.+.++.+. ++.+.+..+.....+ ....+. .+.. |+.++++|
T Consensus 90 ~~~~~~~~~~~~p~~~~~-----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp 164 (361)
T 3scy_A 90 HLLNTQKTMGADPCYLTT-----NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP 164 (361)
T ss_dssp EEEEEEECSSSCEEEEEE-----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT
T ss_pred EEeeEeccCCCCcEEEEE-----CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC
Confidence 321 11 1112222222 122344443 567888888654321 111111 1212 35689999
Q ss_pred CCCEEEEEEeecCCCcCcceeEEEEEEe--CCCc-------eEE---EEEECCCCceEeEEEEEEEcCCCceEEEEEeee
Q 001387 723 QSRTFAICSLKNQSCAEESEMHFVRLLD--DQTF-------EFI---STYPLDTFEYGCSILSCSFSDDSNVYYCVGTAY 790 (1088)
Q Consensus 723 ~~~~~~v~~~~~~~~~~~~~~s~l~lid--~~t~-------~~i---~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~ 790 (1088)
+.+.++++.... ..+.+++ ..+. ... ....+..+..+.++ .+..+++ +++++..
T Consensus 165 dg~~l~~~~~~~---------~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~spdg~-~l~v~~~- 230 (361)
T 3scy_A 165 DGKYLLADDLGT---------DQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHL---IFNSDGK-FAYLINE- 230 (361)
T ss_dssp TSSEEEEEETTT---------TEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEE---EECTTSS-EEEEEET-
T ss_pred CCCEEEEEeCCC---------CEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEE---EEcCCCC-EEEEEcC-
Confidence 998766654322 3456654 3332 221 34566666666543 4554444 4444431
Q ss_pred eCCCCCCCcceEEEEEEEeCCeEEEEEEEEec----CceeEeccc-cC-eEEEEE-C--CEEEEEEeeeccCcccccccc
Q 001387 791 VLPEENEPTKGRILVFIVEDGKLQLIAEKETK----GAVYSLNAF-NG-KLLAAI-N--QKIQLYKWMLRDDGTRELQSE 861 (1088)
Q Consensus 791 ~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~----g~v~ai~~~-~g-~Lv~~~-g--~~l~v~~~~~~~~~~~~L~~~ 861 (1088)
..|+|.+|++..++++.+...... ..+.+++-- +| +|+++. + +.+.+|+++.. .+..+....
T Consensus 231 --------~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~-~g~~~~~~~ 301 (361)
T 3scy_A 231 --------IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDET-NGTLTKVGY 301 (361)
T ss_dssp --------TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTT-TCCEEEEEE
T ss_pred --------CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCC-CCcEEEeeE
Confidence 357899999998888776654432 123455422 45 465554 3 57999887421 233222221
Q ss_pred cccccceEEEEEEEeCCEEEEEec-cccEEEEEEeccCCeEEEEeccCCCceeEEEEEe
Q 001387 862 CGHHGHILALYVQTRGDFIVVGDL-MKSISLLIYKHEEGAIEERARDYNANWMSAVEIL 919 (1088)
Q Consensus 862 ~~~~~~~~~~~l~~~~~~I~vgD~-~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l 919 (1088)
......+..+.++-.++++++++. ...+.+++++.+.+++..+......-.++|+.|+
T Consensus 302 ~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 302 QLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred ecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 111112223344445778999884 4678888888888888888755444456677665
No 36
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.74 E-value=0.025 Score=64.27 Aligned_cols=288 Identities=11% Similarity=0.097 Sum_probs=154.0
Q ss_pred CCCEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecC
Q 001387 497 NASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHL 576 (1088)
Q Consensus 497 ~~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l 576 (1088)
++..++.+..++.+.++.+..++.... .......|+|+++.+ ...+++.|.. |+.+.+|++.+.+.+....
T Consensus 108 ~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~~------~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~- 178 (420)
T 3vl1_A 108 QMRRFILGTTEGDIKVLDSNFNLQREI-DQAHVSEITKLKFFP------SGEALISSSQ-DMQLKIWSVKDGSNPRTLI- 178 (420)
T ss_dssp SSCEEEEEETTSCEEEECTTSCEEEEE-TTSSSSCEEEEEECT------TSSEEEEEET-TSEEEEEETTTCCCCEEEE-
T ss_pred CCCEEEEEECCCCEEEEeCCCcceeee-cccccCccEEEEECC------CCCEEEEEeC-CCeEEEEeCCCCcCceEEc-
Confidence 356777777778887777655544332 123457799999975 2568888877 9999999998655432211
Q ss_pred CCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecC---ccceeEEEEEeCCceEEEEecCCceEE
Q 001387 577 GGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLG---TQPITLRTFSSKNTTHVFAASDRPTVI 653 (1088)
Q Consensus 577 ~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG---~~pv~l~~~~~~~~~~v~~~~~~p~~i 653 (1088)
.......++.+.+ +..+|+.|..||.+..|.+... +.. +..... ..++.-. .+..+.
T Consensus 179 ~h~~~v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~--~~~--~~~~~~~~~~~~v~~~---------~~~~~~----- 238 (420)
T 3vl1_A 179 GHRATVTDIAIID--RGRNVLSASLDGTIRLWECGTG--TTI--HTFNRKENPHDGVNSI---------ALFVGT----- 238 (420)
T ss_dssp CCSSCEEEEEEET--TTTEEEEEETTSCEEEEETTTT--EEE--EEECBTTBTTCCEEEE---------EEEECC-----
T ss_pred CCCCcEEEEEEcC--CCCEEEEEcCCCcEEEeECCCC--cee--EEeecCCCCCCCccEE---------EEecCC-----
Confidence 1112344554443 4567889999999998865431 110 011000 0011000 000010
Q ss_pred EecCCcEEEeecccccceeeeccCCCCCCCeEEEEe-CCeEEEEEEcCCCCeEEEEEeC--CCccCeEEEecCCC-EEEE
Q 001387 654 YSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPL--GEHPRRICHQEQSR-TFAI 729 (1088)
Q Consensus 654 ~~~~~~~~~~~l~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l--~~tp~~i~y~~~~~-~~~v 729 (1088)
.+. ........+.+ ..|+ ...+.++..+ ++.+++..+.... ...++.. ...+..++++|..+ .++.
T Consensus 239 ----~~~-~~~~~~~~v~~-~~~s--~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 308 (420)
T 3vl1_A 239 ----DRQ-LHEISTSKKNN-LEFG--TYGKYVIAGHVSGVITVHNVFSKE--QTIQLPSKFTCSCNSLTVDGNNANYIYA 308 (420)
T ss_dssp ----CSS-CGGGCCCCCCT-TCSS--CTTEEEEEEETTSCEEEEETTTCC--EEEEECCTTSSCEEEEEECSSCTTEEEE
T ss_pred ----cce-eeecccCcccc-eEEc--CCCCEEEEEcCCCeEEEEECCCCc--eeEEcccccCCCceeEEEeCCCCCEEEE
Confidence 000 00000011111 1111 1112343333 6778888776543 2333332 35678899999888 5555
Q ss_pred EEeecCCCcCcceeEEEEEEeCCCce-EEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEE
Q 001387 730 CSLKNQSCAEESEMHFVRLLDDQTFE-FISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIV 808 (1088)
Q Consensus 730 ~~~~~~~~~~~~~~s~l~lid~~t~~-~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i 808 (1088)
++.+ +.|++.|..+.+ .+..+.......+.++. + .+ ..+++.|+ ..|.+.+|++
T Consensus 309 g~~d----------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~-~--~~--~~~l~s~~----------~d~~v~iw~~ 363 (420)
T 3vl1_A 309 GYEN----------GMLAQWDLRSPECPVGEFLINEGTPINNVY-F--AA--GALFVSSG----------FDTSIKLDII 363 (420)
T ss_dssp EETT----------SEEEEEETTCTTSCSEEEEESTTSCEEEEE-E--ET--TEEEEEET----------TTEEEEEEEE
T ss_pred EeCC----------CeEEEEEcCCCcCchhhhhccCCCCceEEE-e--CC--CCEEEEec----------CCccEEEEec
Confidence 5432 579999987764 35555554556666653 2 22 45777664 4589999998
Q ss_pred eCC-e---EE----EEEEEEecCceeEeccc-cC----eEE-EEECCEEEEEEe
Q 001387 809 EDG-K---LQ----LIAEKETKGAVYSLNAF-NG----KLL-AAINQKIQLYKW 848 (1088)
Q Consensus 809 ~~~-k---l~----~~~~~~~~g~v~ai~~~-~g----~Lv-~~~g~~l~v~~~ 848 (1088)
.+. + +. ........+.|.+++-. ++ +|+ ++.+..+.+|++
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~ 417 (420)
T 3vl1_A 364 SDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNL 417 (420)
T ss_dssp CCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEES
T ss_pred cCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEec
Confidence 742 1 11 01122456778777733 23 344 334456667664
No 37
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=97.74 E-value=0.019 Score=64.53 Aligned_cols=292 Identities=10% Similarity=0.037 Sum_probs=150.1
Q ss_pred CceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecC-CCCcCceeEEeeeecCceEEEEEeCCCcEEE
Q 001387 529 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHL-GGEIIPRSVLLCAFEGISYLLCALGDGHLLN 607 (1088)
Q Consensus 529 ~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l-~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~ 607 (1088)
...|.|+++.+- ...+++.|.. |+.+.+|++.+.+....... .......++.+.+ .+..+|+.+..||.+..
T Consensus 73 ~~~v~~~~~~~~-----~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~i 145 (383)
T 3ei3_B 73 DRRVTSLEWHPT-----HPTTVAVGSK-GGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQ-FNTNQLFVSSIRGATTL 145 (383)
T ss_dssp SSCEEEEEECSS-----CTTEEEEEEB-TSCEEEEETTSTTCEEEECCCSTTCBEEEEEEET-TEEEEEEEEETTTEEEE
T ss_pred CCCEEEEEECCC-----CCCEEEEEcC-CCeEEEEeCCCcccceeeecCCcCCceeEEEeCC-CCCCEEEEEeCCCEEEE
Confidence 467899998751 1268888888 99999999986554433222 1222344554432 13467889999999998
Q ss_pred EEEecCCCccccceeeecCccceeEEEEEeCCceEEEEecCCceEE-EecCCcE-EEeecccccceeeeccCCCCCCC-e
Q 001387 608 FLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI-YSSNKKL-LYSNVNLKEVSHMCPFNSAAFPD-S 684 (1088)
Q Consensus 608 y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~i-~~~~~~~-~~~~l~~~~i~~~~~f~~~~~~~-~ 684 (1088)
|.+.. ..+.......-...++.-..+.. +...+++.+....+. +.-+++. ....-+...+.+++ |+. ... .
T Consensus 146 wd~~~--~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~-~~~--~~~~~ 219 (383)
T 3ei3_B 146 RDFSG--SVIQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAE-FNP--RCDWL 219 (383)
T ss_dssp EETTS--CEEEEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEE-ECS--SCTTE
T ss_pred EECCC--CceEEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEE-ECC--CCCCE
Confidence 87652 11111000000112232223322 223333333333222 2222221 11111122333322 221 112 3
Q ss_pred EEEEe-CCeEEEEEEcCCC--CeEEEEEeCCCccCeEEEec-CCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEE
Q 001387 685 LAIAK-EGELTIGTIDDIQ--KLHIRSIPLGEHPRRICHQE-QSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTY 760 (1088)
Q Consensus 685 l~~~~-~~~l~i~~l~~~~--~~~~~~i~l~~tp~~i~y~~-~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~ 760 (1088)
++... ++.+++..+.... .-..+.+.-...+..+.++| +.+.+++++.+ ..|+++|..+++.+..+
T Consensus 220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d----------~~i~iwd~~~~~~~~~~ 289 (383)
T 3ei3_B 220 MATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQR----------NEIRVYSSYDWSKPDQI 289 (383)
T ss_dssp EEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESS----------SEEEEEETTBTTSCSEE
T ss_pred EEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCC----------CcEEEEECCCCcccccc
Confidence 44333 6789998887643 33455556677888999999 77777666543 47999998776644333
Q ss_pred ECCC-----CceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEE-EEecCceeEeccc-c-
Q 001387 761 PLDT-----FEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAE-KETKGAVYSLNAF-N- 832 (1088)
Q Consensus 761 ~~~~-----~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~-~~~~g~v~ai~~~-~- 832 (1088)
.-.+ +.....+ . +.. ...+++++......- .....|.|.+|++..+++..... ....+.+.+++-- +
T Consensus 290 ~~~~~~~~~~~~~~~~-~--~~p-~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g 364 (383)
T 3ei3_B 290 IIHPHRQFQHLTPIKA-T--WHP-MYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTG 364 (383)
T ss_dssp EECCBCCCTTSCCCCC-E--ECS-SSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTS
T ss_pred ccccccccccccceEE-e--ccC-CCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCc
Confidence 3111 1111111 1 111 234455443221101 22356899999987655422221 1234555553422 3
Q ss_pred CeEEEEECCEEEEEEe
Q 001387 833 GKLLAAINQKIQLYKW 848 (1088)
Q Consensus 833 g~Lv~~~g~~l~v~~~ 848 (1088)
..|+.+.+..|++|++
T Consensus 365 ~~l~s~sd~~i~iw~~ 380 (383)
T 3ei3_B 365 DVLASGMGFNILIWNR 380 (383)
T ss_dssp SEEEEEETTEEEEEEC
T ss_pred cEEEEecCCcEEEEec
Confidence 3566676778998875
No 38
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.024 Score=64.19 Aligned_cols=271 Identities=11% Similarity=0.088 Sum_probs=145.6
Q ss_pred cEEEEEEC--CCEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCC
Q 001387 490 SVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD 567 (1088)
Q Consensus 490 ~I~~a~~~--~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~ 567 (1088)
.|.+.+.+ +..++.+..++.+..+..+...+.... .....|.++++.+ ...+++.+.. ++.+.+|++.+
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~--~~~~~v~~~~~~~------~~~~l~~~~~-d~~i~iwd~~~ 180 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLN--FHRAPIVSVKWNK------DGTHIISMDV-ENVTILWNVIS 180 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEEC--CCCSCEEEEEECT------TSSEEEEEET-TCCEEEEETTT
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeecc--CCCccEEEEEECC------CCCEEEEEec-CCeEEEEECCC
Confidence 68887765 457777777788877762222232222 2356789999865 2567777777 99999999987
Q ss_pred CCceEEecCCCCc--------------CceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecCccceeEE
Q 001387 568 LNLITKEHLGGEI--------------IPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLR 633 (1088)
Q Consensus 568 l~~~~~~~l~~~~--------------~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~ 633 (1088)
.+.+......... .+.++.+.. ...++++..+|.+..|.+... .. .........++.-.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~i~~~d~~~~--~~--~~~~~~~~~~i~~~ 253 (425)
T 1r5m_A 181 GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD---DDKFVIPGPKGAIFVYQITEK--TP--TGKLIGHHGPISVL 253 (425)
T ss_dssp TEEEEEECCC---------------CCCBSCCEEEE---TTEEEEECGGGCEEEEETTCS--SC--SEEECCCSSCEEEE
T ss_pred CcEEEEeeccccCccceeeccccCCcceeeEEEEcC---CCEEEEEcCCCeEEEEEcCCC--ce--eeeeccCCCceEEE
Confidence 5554332221100 023333332 356889999999999876542 11 11111122343322
Q ss_pred EEEeCCceEEEEecCCceE-EEecC-Cc-EEEeecccccceeeeccCCCCCCC-eEEEEe-CCeEEEEEEcCCCCeEEEE
Q 001387 634 TFSSKNTTHVFAASDRPTV-IYSSN-KK-LLYSNVNLKEVSHMCPFNSAAFPD-SLAIAK-EGELTIGTIDDIQKLHIRS 708 (1088)
Q Consensus 634 ~~~~~~~~~v~~~~~~p~~-i~~~~-~~-~~~~~l~~~~i~~~~~f~~~~~~~-~l~~~~-~~~l~i~~l~~~~~~~~~~ 708 (1088)
.+.. +...+++.+....+ ++.-+ ++ .....-....+.+++ |+ ++ .++... ++.+.+..+.... ....
T Consensus 254 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~-~~----~~~~l~~~~~d~~i~i~d~~~~~--~~~~ 325 (425)
T 1r5m_A 254 EFND-TNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSAS-WV----GDDKVISCSMDGSVRLWSLKQNT--LLAL 325 (425)
T ss_dssp EEET-TTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEE-EE----TTTEEEEEETTSEEEEEETTTTE--EEEE
T ss_pred EECC-CCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEE-EC----CCCEEEEEeCCCcEEEEECCCCc--EeEe
Confidence 3322 22334444433222 22211 11 111111112222222 21 22 333333 6778877775432 3444
Q ss_pred EeC-CCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCce--------------------EEEEEECCCCc-
Q 001387 709 IPL-GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFE--------------------FISTYPLDTFE- 766 (1088)
Q Consensus 709 i~l-~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~--------------------~i~~~~~~~~E- 766 (1088)
+.. ...+..+.++|+.+.+++++.+ +.|+++|..+.+ .+..+......
T Consensus 326 ~~~~~~~i~~~~~s~~~~~l~~~~~d----------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (425)
T 1r5m_A 326 SIVDGVPIFAGRISQDGQKYAVAFMD----------GQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDND 395 (425)
T ss_dssp EECTTCCEEEEEECTTSSEEEEEETT----------SCEEEEECHHHHC--------------CEECCEEEEECCTTCCC
T ss_pred cccCCccEEEEEEcCCCCEEEEEECC----------CeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCC
Confidence 444 4567889999998888777643 357777766555 55555544333
Q ss_pred eEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEE
Q 001387 767 YGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIV 808 (1088)
Q Consensus 767 ~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i 808 (1088)
.+.++. +.. ...++++|+ ..|.|++|++
T Consensus 396 ~v~~~~---~s~-~~~~l~~~~----------~dg~i~iw~~ 423 (425)
T 1r5m_A 396 YIFDLS---WNC-AGNKISVAY----------SLQEGSVVAI 423 (425)
T ss_dssp CEEEEE---ECT-TSSEEEEEE----------SSSCCEEEEC
T ss_pred ceEEEE---ccC-CCceEEEEe----------cCceEEEEee
Confidence 555554 333 345788776 3377888875
No 39
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.73 E-value=0.098 Score=59.15 Aligned_cols=260 Identities=8% Similarity=0.060 Sum_probs=142.3
Q ss_pred cCcEEEEecCCcceeeeeeCCCCCcEEEEEEC--CCEEEEEECCCeEEEEEEcCcEE-EEEeeccCCceeEEEEeCCCCC
Q 001387 466 SGSVRLVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLATGGGHLVYLEIGDGIL-TEVKHAQLEYEISCLDINPIGE 542 (1088)
Q Consensus 466 ~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~~~~~l~~~~~~~~~l-~~~~~~~l~~~is~l~~~~~~~ 542 (1088)
...|++.+.++++....+..+.+..|.+.+.+ +..++++..++.+..+++..++. .... .....|.|+++.
T Consensus 112 d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~---- 185 (401)
T 4aez_A 112 ERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA--GHQARVGCLSWN---- 185 (401)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEEE----
T ss_pred CCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec--CCCCceEEEEEC----
Confidence 44577777766555555554445568888865 55777777788888877765442 2222 345678899883
Q ss_pred CCCCccEEEEEEecCCEEEEEECCC-CCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccce
Q 001387 543 NPSYSQIAAVGMWTDISVRIFSLPD-LNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRK 621 (1088)
Q Consensus 543 ~~~~~~~~~vg~w~~~~i~i~~l~~-l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~ 621 (1088)
...++.|.. ++.+.+|++.. ...+.... .....+.++.+.. +..+|++|..||.+..|.+... .. ..
T Consensus 186 ----~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~--~~--~~ 253 (401)
T 4aez_A 186 ----RHVLSSGSR-SGAIHHHDVRIANHQIGTLQ-GHSSEVCGLAWRS--DGLQLASGGNDNVVQIWDARSS--IP--KF 253 (401)
T ss_dssp ----TTEEEEEET-TSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTCS--SE--EE
T ss_pred ----CCEEEEEcC-CCCEEEEecccCcceeeEEc-CCCCCeeEEEEcC--CCCEEEEEeCCCeEEEccCCCC--Cc--cE
Confidence 467888877 99999999973 23222111 1112344454433 4578999999999999876532 11 11
Q ss_pred eeecCccceeEEEEEeCCceEEEEec----CCceEEEec-CCcEE-EeecccccceeeeccCCCCCCCeEEEEe---CCe
Q 001387 622 KVSLGTQPITLRTFSSKNTTHVFAAS----DRPTVIYSS-NKKLL-YSNVNLKEVSHMCPFNSAAFPDSLAIAK---EGE 692 (1088)
Q Consensus 622 ~~~lG~~pv~l~~~~~~~~~~v~~~~----~~p~~i~~~-~~~~~-~~~l~~~~i~~~~~f~~~~~~~~l~~~~---~~~ 692 (1088)
...-...++.-..+. .....++++| +....++.- .++.. ... ....+.++ .|+. ....++.+. ++.
T Consensus 254 ~~~~~~~~v~~~~~~-p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~-~~s~--~~~~l~~~~g~~dg~ 328 (401)
T 4aez_A 254 TKTNHNAAVKAVAWC-PWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSL-IWSP--HSKEIMSTHGFPDNN 328 (401)
T ss_dssp EECCCSSCCCEEEEC-TTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEE-EECS--SSSEEEEEECTTTCE
T ss_pred EecCCcceEEEEEEC-CCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEE-EECC--CCCeEEEEeecCCCc
Confidence 111122333222232 2233455543 233333322 22221 111 11222222 2221 122345443 788
Q ss_pred EEEEEEcCCCCeEEEEEeC-CCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEE
Q 001387 693 LTIGTIDDIQKLHIRSIPL-GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIS 758 (1088)
Q Consensus 693 l~i~~l~~~~~~~~~~i~l-~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~ 758 (1088)
+.+..+..........++- ...+..++++|+.+.++.++.+ +.|++.|..+.+.+.
T Consensus 329 i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~d----------g~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 329 LSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASD----------ENLKFWRVYDGDHVK 385 (401)
T ss_dssp EEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTT----------SEEEEEECCC-----
T ss_pred EEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCC----------CcEEEEECCCCcccc
Confidence 9999888654333333332 3567889999988877766533 478888887766554
No 40
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=97.68 E-value=0.1 Score=57.42 Aligned_cols=283 Identities=13% Similarity=0.119 Sum_probs=147.1
Q ss_pred eEEEEEeC----CCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEecCC----ceEEE-ecCCcEEEe-
Q 001387 594 SYLLCALG----DGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDR----PTVIY-SSNKKLLYS- 663 (1088)
Q Consensus 594 ~~L~vgl~----~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~----p~~i~-~~~~~~~~~- 663 (1088)
.++++|+- ++.+..|.++..++.+.......-+..|.-+. +. .+.. +++.+.. -..++ ...+.+...
T Consensus 3 ~~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a-~s-pdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~ 79 (347)
T 3hfq_A 3 ERILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLA-LS-AKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLN 79 (347)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEE-EC-TTCE-EEEEEEETTEEEEEEEEEETTEEEEEE
T ss_pred cEEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEE-Ec-cCCe-EEEEEecCCCceEEEEEecCCcEEEee
Confidence 46788853 45688999998777665433333344454332 22 2333 6665531 22222 223333211
Q ss_pred ec--ccccceeeeccCCCCCCCeEEEEe--CCeEEEEEEcCCCCe-EEEEEeCCC----------ccCeEEEecCCCEEE
Q 001387 664 NV--NLKEVSHMCPFNSAAFPDSLAIAK--EGELTIGTIDDIQKL-HIRSIPLGE----------HPRRICHQEQSRTFA 728 (1088)
Q Consensus 664 ~l--~~~~i~~~~~f~~~~~~~~l~~~~--~~~l~i~~l~~~~~~-~~~~i~l~~----------tp~~i~y~~~~~~~~ 728 (1088)
.+ .......++ |+. -.+.++.+. ++.+.+..++....+ ....++... .|+.++++|+.+ ++
T Consensus 80 ~~~~~~~~p~~~a-~sp--dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~ 155 (347)
T 3hfq_A 80 TVVAPGTPPAYVA-VDE--ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LA 155 (347)
T ss_dssp EEEEESCCCSEEE-EET--TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EE
T ss_pred eeecCCCCCEEEE-ECC--CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EE
Confidence 10 111111111 111 112344444 467888888643332 334444422 256799999988 44
Q ss_pred EEEeecCCCcCcceeEEEEEEeCC-Cc--eEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEE
Q 001387 729 ICSLKNQSCAEESEMHFVRLLDDQ-TF--EFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILV 805 (1088)
Q Consensus 729 v~~~~~~~~~~~~~~s~l~lid~~-t~--~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v 805 (1088)
++.... ..+.+++.. +. ..+..+....+..+..+ .+..+++ ++++... ..|++.+
T Consensus 156 v~~~~~---------~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~---~~spdg~-~l~v~~~---------~~~~v~v 213 (347)
T 3hfq_A 156 VIDLGS---------DKVYVYNVSDAGQLSEQSVLTMEAGFGPRHL---VFSPDGQ-YAFLAGE---------LSSQIAS 213 (347)
T ss_dssp EEETTT---------TEEEEEEECTTSCEEEEEEEECCTTCCEEEE---EECTTSS-EEEEEET---------TTTEEEE
T ss_pred EEeCCC---------CEEEEEEECCCCcEEEeeeEEcCCCCCCceE---EECCCCC-EEEEEeC---------CCCEEEE
Confidence 433221 357777765 33 33455566666666553 3554444 4444321 3478899
Q ss_pred EEEeC--CeEEEEEEEEe-c------CceeEeccc-cC-eEEEEE--CCEEEEEEeeeccCccccccccccc-ccceEEE
Q 001387 806 FIVED--GKLQLIAEKET-K------GAVYSLNAF-NG-KLLAAI--NQKIQLYKWMLRDDGTRELQSECGH-HGHILAL 871 (1088)
Q Consensus 806 ~~i~~--~kl~~~~~~~~-~------g~v~ai~~~-~g-~Lv~~~--g~~l~v~~~~~~~~~~~~L~~~~~~-~~~~~~~ 871 (1088)
|++.. ++++.+..... . ..+.+++-- +| +|+++. ++.|.+|+++ .++..+....... ...+..+
T Consensus 214 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~--~~g~~~~~~~~~~~~~~~~~~ 291 (347)
T 3hfq_A 214 LKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT--ADGHLTLIQQISTEGDFPRDF 291 (347)
T ss_dssp EEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC--GGGCEEEEEEEECSSSCCCEE
T ss_pred EEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC--CCCcEEEeEEEecCCCCcCeE
Confidence 99883 67766655432 2 235555533 45 465544 4789998874 1232222211111 1112234
Q ss_pred EEEEeCCEEEEEecc-ccEEEEEEeccCCeEEEEecc
Q 001387 872 YVQTRGDFIVVGDLM-KSISLLIYKHEEGAIEERARD 907 (1088)
Q Consensus 872 ~l~~~~~~I~vgD~~-~Sv~~~~~~~~~~~l~~~~~D 907 (1088)
.++..++++++++.. ..+.+++++.+..++..+...
T Consensus 292 ~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~~~~ 328 (347)
T 3hfq_A 292 DLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLLQKD 328 (347)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred EECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEecccc
Confidence 444457789998876 668888778777888877643
No 41
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=97.65 E-value=0.063 Score=59.69 Aligned_cols=279 Identities=14% Similarity=0.137 Sum_probs=148.8
Q ss_pred CceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEE
Q 001387 529 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNF 608 (1088)
Q Consensus 529 ~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y 608 (1088)
...|.|+++.+ ...+++.|.. |+.+.+|+....+......... ....++.+.+ +..++..|..||.+..|
T Consensus 64 ~~~V~~~~~s~------d~~~l~s~s~-Dg~v~vWd~~~~~~~~~~~~~~-~~v~~~~~sp--~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 64 GNKVLCMDWCK------DKRRIVSSSQ-DGKVIVWDSFTTNKEHAVTMPC-TWVMACAYAP--SGCAIACGGLDNKCSVY 133 (354)
T ss_dssp SSCEEEEEECT------TSSEEEEEET-TSEEEEEETTTCCEEEEEECSS-SCCCEEEECT--TSSEEEEESTTSEEEEE
T ss_pred CCeEEEEEECC------CCCEEEEEeC-CCeEEEEECCCCCcceEEecCC-CCEEEEEECC--CCCEEEEeeCCCCEEEE
Confidence 45689999965 2567888877 9999999987654433322221 1233444332 45788999999999999
Q ss_pred EEecCCCc--cccceeeecCccceeEEEEEeCCceEEEEecCCceEEEec--CCcEE-EeecccccceeeeccCCCCCCC
Q 001387 609 LLNMKTGE--LTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSS--NKKLL-YSNVNLKEVSHMCPFNSAAFPD 683 (1088)
Q Consensus 609 ~~~~~~~~--l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~i~~~--~~~~~-~~~l~~~~i~~~~~f~~~~~~~ 683 (1088)
.+...... ....+....-..++.-..+. .+...++..+..-.+..++ .++.. ...-+...+.++ .|......+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~-~~~~~~~g~ 211 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFT-NSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCL-DLAPSETGN 211 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE-EECCCSSCC
T ss_pred EEeccccccccccceeeeccCCcEEEEEEe-CCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEE-EEEeCCCCC
Confidence 87543211 11111111112233323332 1222333333333332222 22221 111111223222 121111123
Q ss_pred eEEEEe-CCeEEEEEEcCCCCeEEEEEeC-CCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEE
Q 001387 684 SLAIAK-EGELTIGTIDDIQKLHIRSIPL-GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYP 761 (1088)
Q Consensus 684 ~l~~~~-~~~l~i~~l~~~~~~~~~~i~l-~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~ 761 (1088)
.++... ++.+++-.+.... ..+.+.. ...+..++++|..+.++.++.+ ..+++.|..+.+.+..+.
T Consensus 212 ~l~sgs~Dg~v~~wd~~~~~--~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D----------~~v~lwd~~~~~~~~~~~ 279 (354)
T 2pbi_B 212 TFVSGGCDKKAMVWDMRSGQ--CVQAFETHESDVNSVRYYPSGDAFASGSDD----------ATCRLYDLRADREVAIYS 279 (354)
T ss_dssp EEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSEEEEEETT----------SCEEEEETTTTEEEEEEC
T ss_pred EEEEEeCCCeEEEEECCCCc--EEEEecCCCCCeEEEEEeCCCCEEEEEeCC----------CeEEEEECCCCcEEEEEc
Confidence 344443 6778877776543 3444443 3456788999998887776643 468999988777666554
Q ss_pred CCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCe-EEEEEEEEecCceeEeccc-cCe-EEEE
Q 001387 762 LDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGK-LQLIAEKETKGAVYSLNAF-NGK-LLAA 838 (1088)
Q Consensus 762 ~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~k-l~~~~~~~~~g~v~ai~~~-~g~-Lv~~ 838 (1088)
.... ...+..+.+.. ...++++|. ..|.|.+|++.+++ +..+ ..+.++|++++-- +|. |+.+
T Consensus 280 ~~~~--~~~~~~~~~s~-~g~~l~~g~----------~d~~i~vwd~~~~~~~~~l--~~h~~~v~~l~~spdg~~l~sg 344 (354)
T 2pbi_B 280 KESI--IFGASSVDFSL-SGRLLFAGY----------NDYTINVWDVLKGSRVSIL--FGHENRVSTLRVSPDGTAFCSG 344 (354)
T ss_dssp CTTC--CSCEEEEEECT-TSSEEEEEE----------TTSCEEEEETTTCSEEEEE--CCCSSCEEEEEECTTSSCEEEE
T ss_pred CCCc--ccceeEEEEeC-CCCEEEEEE----------CCCcEEEEECCCCceEEEE--ECCCCcEEEEEECCCCCEEEEE
Confidence 3322 12223334443 356788776 34789999886543 3222 3467899988754 344 4444
Q ss_pred E-CCEEEEE
Q 001387 839 I-NQKIQLY 846 (1088)
Q Consensus 839 ~-g~~l~v~ 846 (1088)
. .++|++|
T Consensus 345 s~D~~v~vW 353 (354)
T 2pbi_B 345 SWDHTLRVW 353 (354)
T ss_dssp ETTSEEEEE
T ss_pred cCCCCEEec
Confidence 3 3566664
No 42
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=97.65 E-value=0.0049 Score=67.94 Aligned_cols=262 Identities=13% Similarity=0.052 Sum_probs=141.4
Q ss_pred CceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCC----ceEEecCCCCcCceeEEeeeecCce-EEEEEeCCC
Q 001387 529 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLN----LITKEHLGGEIIPRSVLLCAFEGIS-YLLCALGDG 603 (1088)
Q Consensus 529 ~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~----~~~~~~l~~~~~p~si~~~~~~~~~-~L~vgl~~G 603 (1088)
...|+|+++.+ ...++++|.. ++.+.+|++...+ ..... .....+.++.+.+ +.. +|+.|..||
T Consensus 11 ~~~v~~~~~s~------~~~~l~~~~~-d~~v~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~--~~~~~l~~~~~dg 79 (342)
T 1yfq_A 11 KDYISDIKIIP------SKSLLLITSW-DGSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFID--NTDLQIYVGTVQG 79 (342)
T ss_dssp SSCEEEEEEEG------GGTEEEEEET-TSEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEEE--SSSEEEEEEETTS
T ss_pred CCcEEEEEEcC------CCCEEEEEcC-CCeEEEEEeCCCCccccceeee--ecCCceEEEEECC--CCCcEEEEEcCCC
Confidence 45689999865 2578888877 9999999987544 22111 1122445555443 345 899999999
Q ss_pred cEEEEEE-ecCCCccccceeeec--CccceeEEEEEeCCceEEEEecCCceEEEec-CC----cEE--Eeec----cccc
Q 001387 604 HLLNFLL-NMKTGELTDRKKVSL--GTQPITLRTFSSKNTTHVFAASDRPTVIYSS-NK----KLL--YSNV----NLKE 669 (1088)
Q Consensus 604 ~l~~y~~-~~~~~~l~~~~~~~l--G~~pv~l~~~~~~~~~~v~~~~~~p~~i~~~-~~----~~~--~~~l----~~~~ 669 (1088)
.+..|.+ ... .. +...- ...++.-..+. . ...++..+..-.+..++ +. ... ..++ ....
T Consensus 80 ~i~~wd~~~~~--~~---~~~~~~~~~~~v~~l~~~-~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 152 (342)
T 1yfq_A 80 EILKVDLIGSP--SF---QALTNNEANLGICRICKY-G-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNK 152 (342)
T ss_dssp CEEEECSSSSS--SE---EECBSCCCCSCEEEEEEE-T-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCC
T ss_pred eEEEEEeccCC--ce---EeccccCCCCceEEEEeC-C-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCc
Confidence 9999876 432 22 11111 12233222222 1 22333333322222221 10 000 0000 0112
Q ss_pred ceeeeccCCCCCCCeEEEEe-CCeEEEEEEcC-CCC-eEEEEEeCCCccCeEEEec-CCCEEEEEEeecCCCcCcceeEE
Q 001387 670 VSHMCPFNSAAFPDSLAIAK-EGELTIGTIDD-IQK-LHIRSIPLGEHPRRICHQE-QSRTFAICSLKNQSCAEESEMHF 745 (1088)
Q Consensus 670 i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~-~~~-~~~~~i~l~~tp~~i~y~~-~~~~~~v~~~~~~~~~~~~~~s~ 745 (1088)
+.+++ | .+++++..+ ++.+.+..+.. ... ......+....++.+.++| ..+.+++++.+ ..
T Consensus 153 v~~~~-~----~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d----------g~ 217 (342)
T 1yfq_A 153 IFTMD-T----NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID----------GR 217 (342)
T ss_dssp EEEEE-E----CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETT----------SE
T ss_pred eEEEE-e----cCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecC----------Cc
Confidence 22211 2 244555544 67899988876 432 4445556667888999999 88877776643 46
Q ss_pred EEEEeCCCc------eEEEEEECCCC--------ceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC
Q 001387 746 VRLLDDQTF------EFISTYPLDTF--------EYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG 811 (1088)
Q Consensus 746 l~lid~~t~------~~i~~~~~~~~--------E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~ 811 (1088)
+++.+-.+. +.+..+.-... ..+.++ .+.. ...+++.|+ ..|.|++|++..+
T Consensus 218 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~s~-~~~~l~~~~----------~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 218 VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSI---EFSP-RHKFLYTAG----------SDGIISCWNLQTR 283 (342)
T ss_dssp EEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEE---EECT-TTCCEEEEE----------TTSCEEEEETTTT
T ss_pred EEEEEEcCCCcccccccceeeecccccccccccceeEEEE---EEcC-CCCEEEEec----------CCceEEEEcCccH
Confidence 777655433 33333332221 134444 3443 345677776 3478999998766
Q ss_pred eEEEEEEEEe-cCceeEeccccCeEEEEE
Q 001387 812 KLQLIAEKET-KGAVYSLNAFNGKLLAAI 839 (1088)
Q Consensus 812 kl~~~~~~~~-~g~v~ai~~~~g~Lv~~~ 839 (1088)
+..... ... .++|++++ -+|.++++.
T Consensus 284 ~~~~~~-~~~h~~~v~~~~-~~~~~l~s~ 310 (342)
T 1yfq_A 284 KKIKNF-AKFNEDSVVKIA-CSDNILCLA 310 (342)
T ss_dssp EEEEEC-CCCSSSEEEEEE-ECSSEEEEE
T ss_pred hHhhhh-hcccCCCceEec-CCCCeEEEE
Confidence 543222 234 78899999 655544443
No 43
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=97.62 E-value=0.078 Score=58.35 Aligned_cols=248 Identities=15% Similarity=0.141 Sum_probs=123.0
Q ss_pred CcEEEEEECC--CEEEEEEC----CCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEE
Q 001387 489 YSVNVATANA--SQVLLATG----GGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRI 562 (1088)
Q Consensus 489 ~~I~~a~~~~--~~lvv~~~----~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i 562 (1088)
..|.+.+.++ ..++++.+ ++.+..++++.++........-...|.|+++.+-.. ...+++.|.. ++.+.+
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~l~~~~~-dg~i~i 94 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSL---QQRYLATGDF-GGNLHI 94 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCT---TTCCEEEEET-TSCEEE
T ss_pred CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCC---CCceEEEecC-CCeEEE
Confidence 4577777653 24444432 567777787765554433334466799999975210 1467888877 999999
Q ss_pred EECCCCC-ceEEecCCCCcCceeEEeee---e-cCceEEEEEeCCCcEEEEEEecCCCccccceeeecC--ccceeEEEE
Q 001387 563 FSLPDLN-LITKEHLGGEIIPRSVLLCA---F-EGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLG--TQPITLRTF 635 (1088)
Q Consensus 563 ~~l~~l~-~~~~~~l~~~~~p~si~~~~---~-~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG--~~pv~l~~~ 635 (1088)
|++.+.+ .+.... .......++.... + .+..+|+.|..||.+..|.+......+... ...-| ..++.-..+
T Consensus 95 wd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~v~~~~~ 172 (357)
T 3i2n_A 95 WNLEAPEMPVYSVK-GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANM-EPVQGENKRDCWTVAF 172 (357)
T ss_dssp ECTTSCSSCSEEEC-CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEE-CCCTTSCCCCEEEEEE
T ss_pred EeCCCCCccEEEEE-ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceec-cccCCCCCCceEEEEE
Confidence 9997644 332211 1112333443321 1 234688999999999988765432111110 00112 112221111
Q ss_pred E---eCCceEEEEecCCceEEEec--CCcEEEeecccccceeeeccCCCC-CCCeEEEEe-CCeEEEEEEcCCC---CeE
Q 001387 636 S---SKNTTHVFAASDRPTVIYSS--NKKLLYSNVNLKEVSHMCPFNSAA-FPDSLAIAK-EGELTIGTIDDIQ---KLH 705 (1088)
Q Consensus 636 ~---~~~~~~v~~~~~~p~~i~~~--~~~~~~~~l~~~~i~~~~~f~~~~-~~~~l~~~~-~~~l~i~~l~~~~---~~~ 705 (1088)
. ..+...+++.++...+...+ .++.....-....+.+++ |+... ..+.++... ++.+.+..+.... .+.
T Consensus 173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 251 (357)
T 3i2n_A 173 GNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLE-FDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFA 251 (357)
T ss_dssp ECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEE-ESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEE
T ss_pred EeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEE-cCCCCCCCCEEEEECCCCeEEEEeCcCCCccccee
Confidence 0 11223344444333333222 233322221223333322 22110 223444444 7888888776542 222
Q ss_pred EEEE-eCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCC
Q 001387 706 IRSI-PLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQ 752 (1088)
Q Consensus 706 ~~~i-~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~ 752 (1088)
.... .-...+..+.++|..+.+++.+... +.|++.|..
T Consensus 252 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~ 290 (357)
T 3i2n_A 252 SVSEKAHKSTVWQVRHLPQNRELFLTAGGA---------GGLHLWKYE 290 (357)
T ss_dssp EEEEECCSSCEEEEEEETTEEEEEEEEETT---------SEEEEEEEE
T ss_pred eeccCCCcCCEEEEEECCCCCcEEEEEeCC---------CcEEEeecC
Confidence 2222 2345677889999877444444332 467776653
No 44
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=97.61 E-value=0.024 Score=62.88 Aligned_cols=282 Identities=12% Similarity=0.099 Sum_probs=139.6
Q ss_pred CCceeEEEEeCCCCCCCCCccEEEEEE------ecCCEEEEEECCCCCc---eEEecCCCCcCceeEEeeeecCceEEEE
Q 001387 528 LEYEISCLDINPIGENPSYSQIAAVGM------WTDISVRIFSLPDLNL---ITKEHLGGEIIPRSVLLCAFEGISYLLC 598 (1088)
Q Consensus 528 l~~~is~l~~~~~~~~~~~~~~~~vg~------w~~~~i~i~~l~~l~~---~~~~~l~~~~~p~si~~~~~~~~~~L~v 598 (1088)
++..|.++++++ + +.+++.+. | ++.+.+|.-+.... ........+....++.+. ....|+.
T Consensus 29 ~~~~v~~~~fs~--d----G~~l~~~sd~~~r~W-d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~d~~l~~ 98 (344)
T 4gqb_B 29 MERQLEAARYRS--D----GALLLGASSLSGRCW-AGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWV---GERGILV 98 (344)
T ss_dssp CCSEEEEEEECT--T----SCEEEEEECCSSSCC-CEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEE---TTTEEEE
T ss_pred ccCCEEEEEECC--C----CCEEEEEeCCceEEe-eceeeeeccccccCCcceeeeeeccCCCEEEEEEe---CCCeEEE
Confidence 456688888865 2 34555443 5 55565555321100 000000001123344433 3457889
Q ss_pred EeCCCcEEEEEEecCCCccccceeeecC-ccceeEEEEEeCCceEEEEecCCceEEEec--CCcEEEe-ecccccceeee
Q 001387 599 ALGDGHLLNFLLNMKTGELTDRKKVSLG-TQPITLRTFSSKNTTHVFAASDRPTVIYSS--NKKLLYS-NVNLKEVSHMC 674 (1088)
Q Consensus 599 gl~~G~l~~y~~~~~~~~l~~~~~~~lG-~~pv~l~~~~~~~~~~v~~~~~~p~~i~~~--~~~~~~~-~l~~~~i~~~~ 674 (1088)
|..||.+..|.+..... +...+....| ..+|.=..|. .+.+.++..+..-.+..++ .++.... .-+...+.++
T Consensus 99 ~s~dg~v~lWd~~~~~~-~~~~~~~~~~H~~~V~~v~~s-pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~- 175 (344)
T 4gqb_B 99 ASDSGAVELWELDENET-LIVSKFCKYEHDDIVSTVSVL-SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCV- 175 (344)
T ss_dssp EETTSEEEEEEECTTSS-CEEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE-
T ss_pred EECCCEEEEEeccCCCc-eeEeeccccCCCCCEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEE-
Confidence 99999999998865321 1111111122 2244322332 1223333333332222222 2322111 1112233322
Q ss_pred ccCCCCCCCeEEEEe-CCeEEEEEEcCCCCeEEEEEe-CCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCC
Q 001387 675 PFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIP-LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQ 752 (1088)
Q Consensus 675 ~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~-l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~ 752 (1088)
.|+.. -...++... ++.+++-.+...+....-... -+..+..++++|....+++..+.. ..|++.|..
T Consensus 176 ~~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d---------g~v~~wd~~ 245 (344)
T 4gqb_B 176 AASPH-KDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN---------GTVSLVDTK 245 (344)
T ss_dssp EECSS-CTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT---------SEEEEEESC
T ss_pred EecCC-CCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccC---------CcEEEEECC
Confidence 22211 111233333 677888777654432211111 133567788888655444443332 579999998
Q ss_pred CceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-
Q 001387 753 TFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF- 831 (1088)
Q Consensus 753 t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~- 831 (1088)
+.+.+.++.-.. ..+.++ .|..++..+|+.|. .-|.|.+|++..+++ +....+.++|++++--
T Consensus 246 ~~~~~~~~~~h~-~~v~~v---~fsp~g~~~lasgs----------~D~~i~vwd~~~~~~--~~~~~H~~~V~~v~~sp 309 (344)
T 4gqb_B 246 STSCVLSSAVHS-QCVTGL---VFSPHSVPFLASLS----------EDCSLAVLDSSLSEL--FRSQAHRDFVRDATWSP 309 (344)
T ss_dssp C--CCEEEECCS-SCEEEE---EECSSSSCCEEEEE----------TTSCEEEECTTCCEE--EEECCCSSCEEEEEECS
T ss_pred CCcEEEEEcCCC-CCEEEE---EEccCCCeEEEEEe----------CCCeEEEEECCCCcE--EEEcCCCCCEEEEEEeC
Confidence 888776665332 334444 45555567787765 237889998766554 3335678899998743
Q ss_pred -cCeEEEEEC--CEEEEEEe
Q 001387 832 -NGKLLAAIN--QKIQLYKW 848 (1088)
Q Consensus 832 -~g~Lv~~~g--~~l~v~~~ 848 (1088)
+.+|+++.| .+|+++.+
T Consensus 310 ~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 310 LNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp SSTTEEEEEETTSCEEEEEC
T ss_pred CCCeEEEEEcCCCeEEEEEC
Confidence 456776554 78888775
No 45
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.61 E-value=0.13 Score=56.02 Aligned_cols=280 Identities=11% Similarity=0.046 Sum_probs=146.6
Q ss_pred CccccceEEEEecCCe-EEEeeecCCeEEEEEeeCCCCCCCcEEEEeeeccCCceeeeEEeccCCCCCceEEEEeeCCCC
Q 001387 298 GETSIASTISYLDNAV-VYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKD 376 (1088)
Q Consensus 298 ~~~~~~s~l~~l~~~~-lf~gS~~gds~l~~~~~~~~~~~~~~~~~~~l~n~~Pi~D~~~~~~~~~~~~~l~~~sG~g~~ 376 (1088)
+......++..-.++- ++.|+ |+.+.-+..+.......+..+.....-++|..++..+. .+.+++++ .+
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~--~d 118 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYTGG---KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD-----GCTLIVGG--EA 118 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC---BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT-----SSEEEEEE--SS
T ss_pred cCCCceEEEEEecCCcEEEEcC---CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCC-----CCEEEEEc--CC
Confidence 4444556677666554 55554 44444444322111111333333355678888887652 33444433 45
Q ss_pred ceEEEEecCCcee-EEEeeeCCCcceEEEeecCCCCCCccEEEEEecCce-EEEEecCCCceeeeeecceeccccceeee
Q 001387 377 GSLRIVRNGIGIN-EQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISET-RILAMNLEDELEETEIEGFCSQTQTLFCH 454 (1088)
Q Consensus 377 g~L~~lr~gi~~~-~~~~~~l~~v~~iw~l~~~~~~~~~~~lilS~~~~T-~vl~~~~~~~~~e~~~~~f~~~~~Ti~~~ 454 (1088)
|.+++..-.-.-. ......- ....++.+.... ...+++....+.+ .++.+.....+.... + ....+.+-
T Consensus 119 ~~i~~~d~~~~~~~~~~~~~~-~~~~i~~~~~~~---~~~~l~~~~~dg~v~~~d~~~~~~~~~~~--~---~~~~i~~~ 189 (337)
T 1gxr_A 119 STLSIWDLAAPTPRIKAELTS-SAPACYALAISP---DSKVCFSCCSDGNIAVWDLHNQTLVRQFQ--G---HTDGASCI 189 (337)
T ss_dssp SEEEEEECCCC--EEEEEEEC-SSSCEEEEEECT---TSSEEEEEETTSCEEEEETTTTEEEEEEC--C---CSSCEEEE
T ss_pred CcEEEEECCCCCcceeeeccc-CCCceEEEEECC---CCCEEEEEeCCCcEEEEeCCCCceeeeee--c---ccCceEEE
Confidence 6777765432211 1122211 122344444331 2345665554443 455443321111111 1 11112211
Q ss_pred ec-CCC-eEEEEe-cCcEEEEecCCcceeeeeeCCCCCcEEEEEEC--CCEEEEEECCCeEEEEEEcCcEEEEEeeccCC
Q 001387 455 DA-IYN-QLVQVT-SGSVRLVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQLE 529 (1088)
Q Consensus 455 ~~-~~~-~ivQVt-~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~ 529 (1088)
.+ .++ .++=.+ ...|++++..+.+.+..... ...|.+.+.+ +..++++..++.+..+++..++.... ....
T Consensus 190 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~--~~~~ 265 (337)
T 1gxr_A 190 DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF--TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL--HLHE 265 (337)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE--CCCS
T ss_pred EECCCCCEEEEEecCCcEEEEECCCCceEeeecC--CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEE--cCCc
Confidence 11 122 333222 34567777665444444432 2357777764 55777777788888877766544332 2345
Q ss_pred ceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEE
Q 001387 530 YEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFL 609 (1088)
Q Consensus 530 ~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~ 609 (1088)
..|.++++.+ ...+++.+.. +|.+.+|++++.+.+..... ...+.++.+.+ +..+|+++..||.+..|+
T Consensus 266 ~~v~~~~~~~------~~~~l~~~~~-dg~i~~~~~~~~~~~~~~~~--~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 266 SCVLSLKFAY------CGKWFVSTGK-DNLLNAWRTPYGASIFQSKE--SSSVLSCDISV--DDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp SCEEEEEECT------TSSEEEEEET-TSEEEEEETTTCCEEEEEEC--SSCEEEEEECT--TSCEEEEEETTSCEEEEE
T ss_pred cceeEEEECC------CCCEEEEecC-CCcEEEEECCCCeEEEEecC--CCcEEEEEECC--CCCEEEEecCCCeEEEEE
Confidence 6788998865 2567888877 99999999987665533221 12344554432 456889999999999988
Q ss_pred Ee
Q 001387 610 LN 611 (1088)
Q Consensus 610 ~~ 611 (1088)
+.
T Consensus 335 ~~ 336 (337)
T 1gxr_A 335 VI 336 (337)
T ss_dssp EE
T ss_pred Ee
Confidence 63
No 46
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.56 E-value=0.074 Score=60.34 Aligned_cols=310 Identities=17% Similarity=0.097 Sum_probs=162.3
Q ss_pred ceEEEEEeCCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEecCCc-eEEEecC-CcEE-Eeeccccc
Q 001387 593 ISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRP-TVIYSSN-KKLL-YSNVNLKE 669 (1088)
Q Consensus 593 ~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p-~~i~~~~-~~~~-~~~l~~~~ 669 (1088)
..+|+.|..||.+..|....... . +.. -+...+.+..+.. +...+++.+..- ..++.-. ++.. ...-+...
T Consensus 68 g~~l~~~~~d~~v~i~d~~~~~~--~--~~~-~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~ 141 (420)
T 3vl1_A 68 GSHLYKARLDGHDFLFNTIIRDG--S--KML-KRADYTAVDTAKL-QMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSE 141 (420)
T ss_dssp ETTEEEEEETTEEEEEECCSEET--T--TTS-CSCCEEEEEEECS-SSCEEEEEETTSCEEEECTTSCEEEEETTSSSSC
T ss_pred CCeEEEEEcCCcEEEEEecccce--e--eEE-ecCCceEEEEEec-CCCEEEEEECCCCEEEEeCCCcceeeecccccCc
Confidence 35688899999999988653211 1 000 1111222222222 222333333333 3333222 2221 11112233
Q ss_pred ceeeeccCCCCCCCeEEEEe-CCeEEEEEEcCCCCeEEEEEe-CCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEE
Q 001387 670 VSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIP-LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVR 747 (1088)
Q Consensus 670 i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~-l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~ 747 (1088)
+.+++ |+. ..+.++... ++.+++-.+...... +.+. -...+..++++|+.+.++.++.+ ..++
T Consensus 142 v~~~~-~~~--~~~~l~s~s~d~~i~iwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~d----------~~v~ 206 (420)
T 3vl1_A 142 ITKLK-FFP--SGEALISSSQDMQLKIWSVKDGSNP--RTLIGHRATVTDIAIIDRGRNVLSASLD----------GTIR 206 (420)
T ss_dssp EEEEE-ECT--TSSEEEEEETTSEEEEEETTTCCCC--EEEECCSSCEEEEEEETTTTEEEEEETT----------SCEE
T ss_pred cEEEE-ECC--CCCEEEEEeCCCeEEEEeCCCCcCc--eEEcCCCCcEEEEEEcCCCCEEEEEcCC----------CcEE
Confidence 33322 221 122344444 677888888765432 3333 24567789999998887766543 4699
Q ss_pred EEeCCCceEEEEEECC--CCceEeEEEEEEEc-----------------CCCceEEEEEeeeeCCCCCCCcceEEEEEEE
Q 001387 748 LLDDQTFEFISTYPLD--TFEYGCSILSCSFS-----------------DDSNVYYCVGTAYVLPEENEPTKGRILVFIV 808 (1088)
Q Consensus 748 lid~~t~~~i~~~~~~--~~E~v~si~~~~~~-----------------~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i 808 (1088)
+.|..+.+.+..+... ....+.++....-. +....++++|+ ..|.|.+|++
T Consensus 207 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~i~d~ 276 (420)
T 3vl1_A 207 LWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH----------VSGVITVHNV 276 (420)
T ss_dssp EEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE----------TTSCEEEEET
T ss_pred EeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc----------CCCeEEEEEC
Confidence 9999999888877653 33445555442110 01356788776 3578999998
Q ss_pred eCCeEEEEEEEEecCceeEecccc-C--eEEEEEC-CEEEEEEeeeccCcccccccccccccceEEEEEEEe-CCEEEEE
Q 001387 809 EDGKLQLIAEKETKGAVYSLNAFN-G--KLLAAIN-QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTR-GDFIVVG 883 (1088)
Q Consensus 809 ~~~kl~~~~~~~~~g~v~ai~~~~-g--~Lv~~~g-~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~-~~~I~vg 883 (1088)
..++..........++|++++--. + .|+++.. ..|++|++. .+...+........ ..+..+.+. +++++.|
T Consensus 277 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~---~~~~~~~~~~~~~~-~~v~~~~~~~~~~l~s~ 352 (420)
T 3vl1_A 277 FSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLR---SPECPVGEFLINEG-TPINNVYFAAGALFVSS 352 (420)
T ss_dssp TTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETT---CTTSCSEEEEESTT-SCEEEEEEETTEEEEEE
T ss_pred CCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcC---CCcCchhhhhccCC-CCceEEEeCCCCEEEEe
Confidence 765543333344678899988653 3 4554443 678887753 22121211111111 122333333 5577778
Q ss_pred eccccEEEEEEecc--CCeE------EEEeccCCCceeEEEEEeeCce----EEEEccCCcEEEEeeC
Q 001387 884 DLMKSISLLIYKHE--EGAI------EERARDYNANWMSAVEILDDDI----YLGAENNFNLFTVRKN 939 (1088)
Q Consensus 884 D~~~Sv~~~~~~~~--~~~l------~~~~~D~~~~~v~~~~~l~~~~----~l~~D~~gnl~~l~~~ 939 (1088)
..-..+.++..... +..+ ..+. .....+.++.+..++. ++++..+|.+.++...
T Consensus 353 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 353 GFDTSIKLDIISDPESERPAIEFETPTFLV--SNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp TTTEEEEEEEECCTTCCSCEECTTSCEEEC--CSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred cCCccEEEEeccCCCCCccceeccCccEEc--cCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 77777777665431 1111 1111 1223455666665544 7777778888777653
No 47
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=97.56 E-value=0.13 Score=61.03 Aligned_cols=333 Identities=12% Similarity=0.101 Sum_probs=178.8
Q ss_pred cEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecCc
Q 001387 548 QIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGT 627 (1088)
Q Consensus 548 ~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~ 627 (1088)
..++|+.+.++++.+|+....+++...... ..|+++.+.. +..+|+++..+|.+..|.++..++ +..+++..|.
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g--~~~~~v~~sp--dg~~l~v~~~d~~V~v~D~~~~t~--~~~~~i~~g~ 222 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDSKKIVKVIDTG--YAVHISRMSA--SGRYLLVIGRDARIDMIDLWAKEP--TKVAEIKIGI 222 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTTCCEEEEEECS--TTEEEEEECT--TSCEEEEEETTSEEEEEETTSSSC--EEEEEEECCS
T ss_pred CEEEEEEcCCCeEEEEECCCceEEEEEecC--cccceEEECC--CCCEEEEECCCCeEEEEECcCCCC--cEEEEEecCC
Confidence 456666666899999998877765443333 2367665553 457899999999999887742333 2234455677
Q ss_pred cceeEEEEEe--C-CceEEEEecC-CceEEEec--CCc-EEEeecccccce--------eeeccCCCCCCCeEEEEe--C
Q 001387 628 QPITLRTFSS--K-NTTHVFAASD-RPTVIYSS--NKK-LLYSNVNLKEVS--------HMCPFNSAAFPDSLAIAK--E 690 (1088)
Q Consensus 628 ~pv~l~~~~~--~-~~~~v~~~~~-~p~~i~~~--~~~-~~~~~l~~~~i~--------~~~~f~~~~~~~~l~~~~--~ 690 (1088)
.|..+. |.- + +...+++.+. .+.+...+ ..+ +...+.....+. .+..+........+++.. .
T Consensus 223 ~p~~va-~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~ 301 (543)
T 1nir_A 223 EARSVE-SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 301 (543)
T ss_dssp EEEEEE-ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CcceEE-eCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence 665442 321 0 3445666552 23332222 222 222222110000 001110001112233322 5
Q ss_pred CeEEEEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeE
Q 001387 691 GELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCS 770 (1088)
Q Consensus 691 ~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~s 770 (1088)
+.+.+........+.+..++.+..|+.+.++|+.+.++++.... ..|.++|..+++.+..++....-+.-.
T Consensus 302 g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~---------~~v~v~D~~tg~l~~~i~~g~~ph~g~ 372 (543)
T 1nir_A 302 GKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNS---------NKVAVIDSKDRRLSALVDVGKTPHPGR 372 (543)
T ss_dssp TEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGG---------TEEEEEETTTTEEEEEEECSSSBCCTT
T ss_pred CeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCC---------CeEEEEECCCCeEEEeeccCCCCCCCC
Confidence 67777777665556677888899999999999999777765432 478999999999988877543222111
Q ss_pred EEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeC-----CeEEEEEEEEec-CceeEeccc-cC-eEEEEE---
Q 001387 771 ILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVED-----GKLQLIAEKETK-GAVYSLNAF-NG-KLLAAI--- 839 (1088)
Q Consensus 771 i~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~-----~kl~~~~~~~~~-g~v~ai~~~-~g-~Lv~~~--- 839 (1088)
...+. ..+...+++.+.. ..+.|.+|++.. ..++.+...+.. +.+..|..- +| +|+++.
T Consensus 373 g~~~~-~p~~g~~~~s~~~---------~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~ 442 (543)
T 1nir_A 373 GANFV-HPKYGPVWSTSHL---------GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFN 442 (543)
T ss_dssp CEEEE-ETTTEEEEEEEBS---------SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTC
T ss_pred CcccC-CCCCccEEEeccC---------CCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCC
Confidence 11222 2223455543321 236889998874 126666666654 355555533 34 566665
Q ss_pred -----CCEEEEEEeeeccCccccccccccc----ccceEEEEEEE--eCCEEEEEec----cccEEEEEEeccCCeEEEE
Q 001387 840 -----NQKIQLYKWMLRDDGTRELQSECGH----HGHILALYVQT--RGDFIVVGDL----MKSISLLIYKHEEGAIEER 904 (1088)
Q Consensus 840 -----g~~l~v~~~~~~~~~~~~L~~~~~~----~~~~~~~~l~~--~~~~I~vgD~----~~Sv~~~~~~~~~~~l~~~ 904 (1088)
.++|.+|+.+..+ ...+..+++.+ ...-.++++.. .|+.++++-- .++- +..|+....++...
T Consensus 443 ~~~~~~~~v~v~d~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~-i~v~D~~t~~~~~~ 520 (543)
T 1nir_A 443 PDARISQSVAVFDLKNLD-AKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSA-LVVVDDKTLKLKAV 520 (543)
T ss_dssp SSHHHHTCEEEEETTCTT-SCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCE-EEEEETTTTEEEEE
T ss_pred CCcccCceEEEEECCCCC-CCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCe-EEEEECCCceEEEe
Confidence 5699998864211 11122222211 11123444433 4667776632 2232 22367666666555
Q ss_pred eccC
Q 001387 905 ARDY 908 (1088)
Q Consensus 905 ~~D~ 908 (1088)
-+|.
T Consensus 521 i~~~ 524 (543)
T 1nir_A 521 VKDP 524 (543)
T ss_dssp ECCT
T ss_pred ecCC
Confidence 5553
No 48
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.54 E-value=0.19 Score=57.07 Aligned_cols=294 Identities=12% Similarity=0.106 Sum_probs=152.1
Q ss_pred cEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecC----CCCcCceeEEeeeecCc
Q 001387 518 GILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHL----GGEIIPRSVLLCAFEGI 593 (1088)
Q Consensus 518 ~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l----~~~~~p~si~~~~~~~~ 593 (1088)
+.+......+....+.++++.+ ...++++...++.+.+|++.+.+....... .....+.++.+. .+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~s~-------~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 181 (433)
T 3bws_A 111 ITHRFISRFKTGFQPKSVRFID-------NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIP--EHN 181 (433)
T ss_dssp CSEEEEEEEECSSCBCCCEESS-------SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEG--GGT
T ss_pred CcceEEEEEcCCCCceEEEEeC-------CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEc--CCC
Confidence 4455555555666677888864 234455545488999999987655432111 011122334332 234
Q ss_pred eEEEEEeCCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEec-C-CceEEEec-CCcEEEeeccc-cc
Q 001387 594 SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAAS-D-RPTVIYSS-NKKLLYSNVNL-KE 669 (1088)
Q Consensus 594 ~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~-~-~p~~i~~~-~~~~~~~~l~~-~~ 669 (1088)
..++.+..+|.+..|.+.. +... +.......++.-..+. .+...+++.+ . ....++.. .++.. ..+.. ..
T Consensus 182 ~~~~s~~~d~~v~~~d~~~--~~~~--~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~ 255 (433)
T 3bws_A 182 ELWVSQMQANAVHVFDLKT--LAYK--ATVDLTGKWSKILLYD-PIRDLVYCSNWISEDISVIDRKTKLEI-RKTDKIGL 255 (433)
T ss_dssp EEEEEEGGGTEEEEEETTT--CCEE--EEEECSSSSEEEEEEE-TTTTEEEEEETTTTEEEEEETTTTEEE-EECCCCSE
T ss_pred EEEEEECCCCEEEEEECCC--ceEE--EEEcCCCCCeeEEEEc-CCCCEEEEEecCCCcEEEEECCCCcEE-EEecCCCC
Confidence 5677788899988877543 2211 1122112222222332 2334565554 2 22222322 23321 11111 11
Q ss_pred ceeeeccCCCCCCCeEEEEe---------CCeEEEEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCc
Q 001387 670 VSHMCPFNSAAFPDSLAIAK---------EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEE 740 (1088)
Q Consensus 670 i~~~~~f~~~~~~~~l~~~~---------~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~ 740 (1088)
+.++ .|+. ..+.++... ++.+.+..+... -..+.+.....|+.++++|+.+.+++.+...
T Consensus 256 ~~~~-~~~~--~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~------ 324 (433)
T 3bws_A 256 PRGL-LLSK--DGKELYIAQFSASNQESGGGRLGIYSMDKE--KLIDTIGPPGNKRHIVSGNTENKIYVSDMCC------ 324 (433)
T ss_dssp EEEE-EECT--TSSEEEEEEEESCTTCSCCEEEEEEETTTT--EEEEEEEEEECEEEEEECSSTTEEEEEETTT------
T ss_pred ceEE-EEcC--CCCEEEEEECCCCccccCCCeEEEEECCCC--cEEeeccCCCCcceEEECCCCCEEEEEecCC------
Confidence 1111 1211 112344333 345556555433 2344455556788899999988766665432
Q ss_pred ceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCC-----CCCCcceEEEEEEEeCCeEEE
Q 001387 741 SEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPE-----ENEPTKGRILVFIVEDGKLQL 815 (1088)
Q Consensus 741 ~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~-----e~~~~~Gri~v~~i~~~kl~~ 815 (1088)
..++++|..+++.+..+.. ...+.+++ +..+ ..+++++....... -.....|+|++|+...+++..
T Consensus 325 ---~~v~v~d~~~~~~~~~~~~--~~~~~~~~---~s~d-g~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~ 395 (433)
T 3bws_A 325 ---SKIEVYDLKEKKVQKSIPV--FDKPNTIA---LSPD-GKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE 395 (433)
T ss_dssp ---TEEEEEETTTTEEEEEEEC--SSSEEEEE---ECTT-SSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE
T ss_pred ---CEEEEEECCCCcEEEEecC--CCCCCeEE---EcCC-CCEEEEEecCCCccccccccccccceEEEEEECCCCcEEE
Confidence 5799999999988877663 34444443 4433 45677766421100 011235899999987665443
Q ss_pred EEEEEecCceeEeccc-cC-eEEEEE--CCEEEEEEe
Q 001387 816 IAEKETKGAVYSLNAF-NG-KLLAAI--NQKIQLYKW 848 (1088)
Q Consensus 816 ~~~~~~~g~v~ai~~~-~g-~Lv~~~--g~~l~v~~~ 848 (1088)
. ....+.+.+++-- +| +|+++. .+.+++|++
T Consensus 396 ~--~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~ 430 (433)
T 3bws_A 396 F--WEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRR 430 (433)
T ss_dssp E--EECSSSEEEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred E--ecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEe
Confidence 3 3345677777644 34 455554 578888775
No 49
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.00079 Score=76.86 Aligned_cols=287 Identities=10% Similarity=0.070 Sum_probs=141.9
Q ss_pred ceeEEEEeCCCCCCCCCccEEEEE----------EecCCEEEEEECCCCCce-EEecCCCCcCceeEEeeeecCceEEEE
Q 001387 530 YEISCLDINPIGENPSYSQIAAVG----------MWTDISVRIFSLPDLNLI-TKEHLGGEIIPRSVLLCAFEGISYLLC 598 (1088)
Q Consensus 530 ~~is~l~~~~~~~~~~~~~~~~vg----------~w~~~~i~i~~l~~l~~~-~~~~l~~~~~p~si~~~~~~~~~~L~v 598 (1088)
..++|+++.|- ...+++.| .. ++.+++|++...+.. ....+.......++.+.. +..+|+.
T Consensus 13 ~~v~~~~~sp~-----g~~~l~~g~~~g~~~~~~~~-d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~ 84 (416)
T 2pm9_A 13 SRTATFAWSHD-----KIPLLVSGTVSGTVDANFST-DSSLELWSLLAADSEKPIASLQVDSKFNDLDWSH--NNKIIAG 84 (416)
T ss_dssp EESCBCCBCSS-----SSCEEEEBCBSSCCCSSCCC-CCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECS--SSSCEEE
T ss_pred hhcceEeeCCC-----CCCEEEEEecCcccccccCC-CCeEEEEEccCCCCCcEEEEEecCCceEEEEECC--CCCeEEE
Confidence 35778888652 13478887 45 889999999754321 011111122334454432 4567889
Q ss_pred EeCCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEecCCceEEEec--CCc------EEEee----cc
Q 001387 599 ALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSS--NKK------LLYSN----VN 666 (1088)
Q Consensus 599 gl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~i~~~--~~~------~~~~~----l~ 666 (1088)
|..||.+..|.+..............-...++.-..+...+...++..+..-.+...+ .++ ..+.. -+
T Consensus 85 ~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 164 (416)
T 2pm9_A 85 ALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSS 164 (416)
T ss_dssp EESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCS
T ss_pred EccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCC
Confidence 9999999999876521111111111111233332233211122333333322222221 111 00000 01
Q ss_pred cccceeeeccCCCCCCCeEEEE-eCCeEEEEEEcCCCCeEEEEEeC-------CCccCeEEEecCCC-EEEEEEeecCCC
Q 001387 667 LKEVSHMCPFNSAAFPDSLAIA-KEGELTIGTIDDIQKLHIRSIPL-------GEHPRRICHQEQSR-TFAICSLKNQSC 737 (1088)
Q Consensus 667 ~~~i~~~~~f~~~~~~~~l~~~-~~~~l~i~~l~~~~~~~~~~i~l-------~~tp~~i~y~~~~~-~~~v~~~~~~~~ 737 (1088)
...+.+++ |+. .-+..++.. .++.+++-.+.... ....+.. ...+..++++|..+ .+++++.+.
T Consensus 165 ~~~v~~~~-~~~-~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--- 237 (416)
T 2pm9_A 165 VDEVISLA-WNQ-SLAHVFASAGSSNFASIWDLKAKK--EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD--- 237 (416)
T ss_dssp SCCCCEEE-ECS-SCTTEEEEESSSSCEEEEETTTTE--EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCS---
T ss_pred CCCeeEEE-eCC-CCCcEEEEEcCCCCEEEEECCCCC--cceEEeccccccccCCceEEEEECCCCCCEEEEEECCC---
Confidence 11222211 111 001223333 36778887776543 3444444 45678899999865 444443221
Q ss_pred cCcceeEEEEEEeCCCc-eEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEE
Q 001387 738 AEESEMHFVRLLDDQTF-EFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLI 816 (1088)
Q Consensus 738 ~~~~~~s~l~lid~~t~-~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~ 816 (1088)
....|+++|..+. +.+..+.......+.+++ +......+++.|+ ..|.|.+|++..++....
T Consensus 238 ----~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~---~s~~~~~~l~s~~----------~dg~v~~wd~~~~~~~~~ 300 (416)
T 2pm9_A 238 ----NDPSILIWDLRNANTPLQTLNQGHQKGILSLD---WCHQDEHLLLSSG----------RDNTVLLWNPESAEQLSQ 300 (416)
T ss_dssp ----SSCCCCEEETTSTTSCSBCCCSCCSSCEEEEE---ECSSCSSCEEEEE----------SSSEEEEECSSSCCEEEE
T ss_pred ----CCceEEEEeCCCCCCCcEEeecCccCceeEEE---eCCCCCCeEEEEe----------CCCCEEEeeCCCCcccee
Confidence 1136888887664 333222212233444443 4432456777776 347899998875543221
Q ss_pred EEEEecCceeEecccc-C-eEEEEEC--CEEEEEEee
Q 001387 817 AEKETKGAVYSLNAFN-G-KLLAAIN--QKIQLYKWM 849 (1088)
Q Consensus 817 ~~~~~~g~v~ai~~~~-g-~Lv~~~g--~~l~v~~~~ 849 (1088)
. ....++|++++--. + .++++.+ +.|++|++.
T Consensus 301 ~-~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 301 F-PARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ 336 (416)
T ss_dssp E-ECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred e-cCCCCceEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence 1 24577888887553 3 4555443 678888864
No 50
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=97.52 E-value=0.014 Score=65.78 Aligned_cols=282 Identities=13% Similarity=0.129 Sum_probs=147.9
Q ss_pred CceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEE
Q 001387 529 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNF 608 (1088)
Q Consensus 529 ~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y 608 (1088)
...|.|+++.| ...+++.|.+ |++++||++.+.+......... ....++.+. .+..+|..|..||.+..|
T Consensus 66 ~~~V~~~~~sp------~~~~l~s~s~-D~~v~iWd~~~~~~~~~~~~h~-~~v~~~~~s--~~g~~las~~~d~~v~iw 135 (380)
T 3iz6_a 66 SGKVYSLDWTP------EKNWIVSASQ-DGRLIVWNALTSQKTHAIKLHC-PWVMECAFA--PNGQSVACGGLDSACSIF 135 (380)
T ss_dssp SSCEEEEEECT------TSSCEEEEET-TSEEEEEETTTTEEEEEEECCC-TTCCCCEEC--TTSSEEEECCSSSCCEEE
T ss_pred ccEEEEEEEcC------CCCEEEEEeC-CCeEEEEECCCCccceEEecCC-CCEEEEEEC--CCCCEEEEeeCCCcEEEE
Confidence 46789999976 2567888888 9999999987654433222211 122333333 245678899999999999
Q ss_pred EEecCC---CccccceeeecCcc-ceeEEEEEeCCceEEEEecCCceEEEec--CCc-EEEee-----cccccceeeecc
Q 001387 609 LLNMKT---GELTDRKKVSLGTQ-PITLRTFSSKNTTHVFAASDRPTVIYSS--NKK-LLYSN-----VNLKEVSHMCPF 676 (1088)
Q Consensus 609 ~~~~~~---~~l~~~~~~~lG~~-pv~l~~~~~~~~~~v~~~~~~p~~i~~~--~~~-~~~~~-----l~~~~i~~~~~f 676 (1088)
.+.... +.....+ ...|.. ++.-..+...+...++..+..-.+..++ .++ +.... -+...+.+++ +
T Consensus 136 ~~~~~~~~~~~~~~~~-~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~-~ 213 (380)
T 3iz6_a 136 NLSSQADRDGNMPVSR-VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS-I 213 (380)
T ss_dssp ECCCCSSCCCSSTTCC-BCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEE-E
T ss_pred ECCCCccccCCcccee-eccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEE-e
Confidence 875421 1111111 111111 1110011011112233332222222222 121 11110 0111222222 1
Q ss_pred CCCCCCCeEEEEe-CCeEEEEEEcCCCCeEEEEEe-CCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCc
Q 001387 677 NSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIP-LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTF 754 (1088)
Q Consensus 677 ~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~-l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~ 754 (1088)
+. ..++.++... ++.+++-.+..... ..+.+. -...+..++++|+.+.++.++.+ ..+++.|..+.
T Consensus 214 ~~-~~~~~l~sgs~D~~v~~wd~~~~~~-~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D----------~~i~lwd~~~~ 281 (380)
T 3iz6_a 214 NS-LNANMFISGSCDTTVRLWDLRITSR-AVRTYHGHEGDINSVKFFPDGQRFGTGSDD----------GTCRLFDMRTG 281 (380)
T ss_dssp CS-SSCCEEEEEETTSCEEEEETTTTCC-CCEEECCCSSCCCEEEECTTSSEEEEECSS----------SCEEEEETTTT
T ss_pred ec-CCCCEEEEEECCCeEEEEECCCCCc-ceEEECCcCCCeEEEEEecCCCeEEEEcCC----------CeEEEEECCCC
Confidence 11 0122344333 67788777653221 223332 23467889999998877666543 47999999998
Q ss_pred eEEEEEECCCCc------eEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEE-E--EEecCce
Q 001387 755 EFISTYPLDTFE------YGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIA-E--KETKGAV 825 (1088)
Q Consensus 755 ~~i~~~~~~~~E------~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~-~--~~~~g~v 825 (1088)
+.+..+...+.. .+.++ .+.. ...+++.|+ ..|.|++|+....+..... . ..+.++|
T Consensus 282 ~~~~~~~~~~~~~~~~~~~v~~~---~~s~-~g~~l~~g~----------~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v 347 (380)
T 3iz6_a 282 HQLQVYNREPDRNDNELPIVTSV---AFSI-SGRLLFAGY----------SNGDCYVWDTLLAEMVLNLGTLQNSHEGRI 347 (380)
T ss_dssp EEEEEECCCCSSSCCSSCSCSEE---EECS-SSSEEEEEC----------TTSCEEEEETTTCCEEEEECCSCSSCCCCC
T ss_pred cEEEEecccccccccccCceEEE---EECC-CCCEEEEEE----------CCCCEEEEECCCCceEEEEecccCCCCCce
Confidence 888777654321 13443 3443 356788775 3588999987654433221 1 2467889
Q ss_pred eEeccc-cCeEEEEEC--CEEEEEEe
Q 001387 826 YSLNAF-NGKLLAAIN--QKIQLYKW 848 (1088)
Q Consensus 826 ~ai~~~-~g~Lv~~~g--~~l~v~~~ 848 (1088)
++++-- +|..+++.+ ++|+++++
T Consensus 348 ~~l~~s~dg~~l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 348 SCLGLSSDGSALCTGSWDKNLKIWAF 373 (380)
T ss_dssp CEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred EEEEECCCCCEEEEeeCCCCEEEEec
Confidence 988754 455555443 67888776
No 51
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=97.52 E-value=0.025 Score=62.46 Aligned_cols=224 Identities=13% Similarity=0.103 Sum_probs=129.7
Q ss_pred CCeEEEEEEcCCCCeEEEEEeCCCccCeEEEecCC---CEEEEEEeecCCCcCcceeEEEEEEeCCCce-EEEEEECCCC
Q 001387 690 EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQS---RTFAICSLKNQSCAEESEMHFVRLLDDQTFE-FISTYPLDTF 765 (1088)
Q Consensus 690 ~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~---~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~-~i~~~~~~~~ 765 (1088)
++.+++-.+............-...+..+.++|.. +.++.++.+ +.+++.|..+.+ .+..+. ...
T Consensus 43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~-~~~ 111 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG----------GNLHIWNLEAPEMPVYSVK-GHK 111 (357)
T ss_dssp CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT----------SCEEEECTTSCSSCSEEEC-CCS
T ss_pred CcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC----------CeEEEEeCCCCCccEEEEE-ecc
Confidence 56788888876554444444555677889999884 666555433 468888887665 444433 233
Q ss_pred ceEeEEEEEE---EcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCe--EEEEEEE--EecCceeEecc---c--cC
Q 001387 766 EYGCSILSCS---FSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGK--LQLIAEK--ETKGAVYSLNA---F--NG 833 (1088)
Q Consensus 766 E~v~si~~~~---~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~k--l~~~~~~--~~~g~v~ai~~---~--~g 833 (1088)
..+.++.... +. ...++++.|. ..|.|.+|++...+ +..+... ....++++++. + ++
T Consensus 112 ~~v~~~~~~~~~~~s-~~~~~l~~~~----------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 180 (357)
T 3i2n_A 112 EIINAIDGIGGLGIG-EGAPEIVTGS----------RDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEE 180 (357)
T ss_dssp SCEEEEEEESGGGCC--CCCEEEEEE----------TTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CC
T ss_pred cceEEEeeccccccC-CCccEEEEEe----------CCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCC
Confidence 4466664431 22 2345777765 34789999887543 2222111 11337888762 2 34
Q ss_pred -eEEEEEC-CEEEEEEeeeccCcccccccccccccceEEEEEEE---eCCEEEEEeccccEEEEEEecc--CCeEEEEec
Q 001387 834 -KLLAAIN-QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQT---RGDFIVVGDLMKSISLLIYKHE--EGAIEERAR 906 (1088)
Q Consensus 834 -~Lv~~~g-~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~---~~~~I~vgD~~~Sv~~~~~~~~--~~~l~~~~~ 906 (1088)
.|+++.. ..|++|++. .+ +.............+.... .++++++|..-..+.++..+.. ...+.....
T Consensus 181 ~~l~~~~~d~~i~i~d~~---~~--~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 255 (357)
T 3i2n_A 181 RVVCAGYDNGDIKLFDLR---NM--ALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSE 255 (357)
T ss_dssp CEEEEEETTSEEEEEETT---TT--EEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEE
T ss_pred CEEEEEccCCeEEEEECc---cC--ceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeecc
Confidence 4444444 688887752 12 1221111222222333333 5689999988888888765542 122322222
Q ss_pred cCCCceeEEEEEeeCce--EEEEccCCcEEEEeeCC
Q 001387 907 DYNANWMSAVEILDDDI--YLGAENNFNLFTVRKNS 940 (1088)
Q Consensus 907 D~~~~~v~~~~~l~~~~--~l~~D~~gnl~~l~~~~ 940 (1088)
..+...++++.+-.++. ++.+..+|.+.+++...
T Consensus 256 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 256 KAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred CCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence 24556788888776654 67788899999999864
No 52
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.026 Score=62.90 Aligned_cols=199 Identities=15% Similarity=0.180 Sum_probs=119.3
Q ss_pred CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCC--CceEEEEEECCCC-ceEeEEEEEEEcC-CCceEEEEEe
Q 001387 713 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQ--TFEFISTYPLDTF-EYGCSILSCSFSD-DSNVYYCVGT 788 (1088)
Q Consensus 713 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~--t~~~i~~~~~~~~-E~v~si~~~~~~~-~~~~~i~VGT 788 (1088)
..+..++++|+.+.++.++.+ +.|++.|.. +++.+.. +..+ ..+.+++ +.. ....+++.|.
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d----------g~i~iw~~~~~~~~~~~~--~~~h~~~v~~~~---~~~~~~~~~l~s~~ 76 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCSSD----------KTIKIFEVEGETHKLIDT--LTGHEGPVWRVD---WAHPKFGTILASCS 76 (379)
T ss_dssp CCEEEEEECSSSSEEEEEETT----------SCEEEEEEETTEEEEEEE--ECCCSSCEEEEE---ECCGGGCSEEEEEE
T ss_pred ccEEEEEEcCCCCEEEEEECC----------CcEEEEecCCCcceeeeE--ecCCCCcEEEEE---eCCCCCCCEEEEec
Confidence 346678899988877766543 357777765 4444433 3332 3345543 322 1256787776
Q ss_pred eeeCCCCCCCcceEEEEEEEeCCeEEEEEEEE-ecCceeEecccc---Ce-EEEE-ECCEEEEEEeeeccCccccccccc
Q 001387 789 AYVLPEENEPTKGRILVFIVEDGKLQLIAEKE-TKGAVYSLNAFN---GK-LLAA-INQKIQLYKWMLRDDGTRELQSEC 862 (1088)
Q Consensus 789 ~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~-~~g~v~ai~~~~---g~-Lv~~-~g~~l~v~~~~~~~~~~~~L~~~~ 862 (1088)
..|.|.+|++..++.+.+.... ..++|++++-.. +. |+++ .+..|++|++.. ..........
T Consensus 77 ----------~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~--~~~~~~~~~~ 144 (379)
T 3jrp_A 77 ----------YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE--NGTTSPIIID 144 (379)
T ss_dssp ----------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCT--TSCCCEEEEE
T ss_pred ----------cCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCC--CCceeeEEec
Confidence 3488999999988765555443 678999988653 43 4443 346788888631 1111111111
Q ss_pred ccccceEEEEEEE---------------eCCEEEEEeccccEEEEEEeccCCeEEEEe-ccCCCceeEEEEEeeC---c-
Q 001387 863 GHHGHILALYVQT---------------RGDFIVVGDLMKSISLLIYKHEEGAIEERA-RDYNANWMSAVEILDD---D- 922 (1088)
Q Consensus 863 ~~~~~~~~~~l~~---------------~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~-~D~~~~~v~~~~~l~~---~- 922 (1088)
.... .+.++.. .++++++|..-..+.++..+.......... -..+...++++.+-.+ +
T Consensus 145 ~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~ 222 (379)
T 3jrp_A 145 AHAI--GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 222 (379)
T ss_dssp CCTT--CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred CCCC--ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCC
Confidence 1111 2233333 367899999988888876654443333332 1234556778877765 4
Q ss_pred eEEEEccCCcEEEEeeCC
Q 001387 923 IYLGAENNFNLFTVRKNS 940 (1088)
Q Consensus 923 ~~l~~D~~gnl~~l~~~~ 940 (1088)
.++.++.+|.+.++....
T Consensus 223 ~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 223 YLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp EEEEEETTSCEEEEEESS
T ss_pred eEEEEeCCCEEEEEeCCC
Confidence 467788999999998864
No 53
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=97.49 E-value=0.044 Score=60.58 Aligned_cols=272 Identities=12% Similarity=0.065 Sum_probs=149.8
Q ss_pred EeCCeEEEEEEcCCCCe-EEEEEe---CCCccCeEEEecCCC----EEEEEEeecCCCcCcceeEEEEEEeCCCceEEEE
Q 001387 688 AKEGELTIGTIDDIQKL-HIRSIP---LGEHPRRICHQEQSR----TFAICSLKNQSCAEESEMHFVRLLDDQTFEFIST 759 (1088)
Q Consensus 688 ~~~~~l~i~~l~~~~~~-~~~~i~---l~~tp~~i~y~~~~~----~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~ 759 (1088)
..++.+.+-.+...... ..+... -...+..++++|..+ .+++++.+ +.|+++|..+.+.+..
T Consensus 41 ~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d----------g~i~v~d~~~~~~~~~ 110 (366)
T 3k26_A 41 VGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR----------GIIRIINPITMQCIKH 110 (366)
T ss_dssp EETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETT----------CEEEEECTTTCCEEEE
T ss_pred CCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCC----------CEEEEEEchhceEeee
Confidence 44778888888765432 222222 335677888988843 44444422 5899999988888877
Q ss_pred EECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEE--EEecCceeEeccc-cC-eE
Q 001387 760 YPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAE--KETKGAVYSLNAF-NG-KL 835 (1088)
Q Consensus 760 ~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~--~~~~g~v~ai~~~-~g-~L 835 (1088)
+.- ....+.+++ +......+++.|+ ..|.|.+|++..++...... ....++|++++-- ++ +|
T Consensus 111 ~~~-~~~~i~~~~---~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 176 (366)
T 3k26_A 111 YVG-HGNAINELK---FHPRDPNLLLSVS----------KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKI 176 (366)
T ss_dssp EES-CCSCEEEEE---ECSSCTTEEEEEE----------TTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEE
T ss_pred ecC-CCCcEEEEE---ECCCCCCEEEEEe----------CCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEE
Confidence 652 234455554 3432456788776 35789999987665443332 3568899998854 34 45
Q ss_pred EEEE-CCEEEEEEeeeccCccccccccc----------------------ccc-cceEEEEEEEeCCEEEEEeccccEEE
Q 001387 836 LAAI-NQKIQLYKWMLRDDGTRELQSEC----------------------GHH-GHILALYVQTRGDFIVVGDLMKSISL 891 (1088)
Q Consensus 836 v~~~-g~~l~v~~~~~~~~~~~~L~~~~----------------------~~~-~~~~~~~l~~~~~~I~vgD~~~Sv~~ 891 (1088)
+++. ++.|++|++.... ....+.... ... ....+.++...++++++|..-..+.+
T Consensus 177 ~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~ 255 (366)
T 3k26_A 177 MSCGMDHSLKLWRINSKR-MMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVC 255 (366)
T ss_dssp EEEETTSCEEEEESCSHH-HHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEE
T ss_pred EEecCCCCEEEEECCCCc-cccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEE
Confidence 4443 4688888763110 000010000 000 11123345555899999999888877
Q ss_pred EEEeccCC----------eEEEEe-ccCCCceeEEEEEeeC--c-eEEEEccCCcEEEEeeCCCCCCcccccceeEEEEE
Q 001387 892 LIYKHEEG----------AIEERA-RDYNANWMSAVEILDD--D-IYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEY 957 (1088)
Q Consensus 892 ~~~~~~~~----------~l~~~~-~D~~~~~v~~~~~l~~--~-~~l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f 957 (1088)
+....... ....+. -......++++.+-.+ + .++++..+|.+.+++....... ......-..
T Consensus 256 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~ 331 (366)
T 3k26_A 256 WKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH----KAKCTTLTH 331 (366)
T ss_dssp EEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG----GCEEEEECC
T ss_pred EeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc----cccceEEcc
Confidence 65543211 111111 1112223334444434 3 4667889999999987643211 111111111
Q ss_pred Ec-CCccceEEeeeeeecCCCCCCCCccEEEEEcccccEEEEE
Q 001387 958 HL-GEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIA 999 (1088)
Q Consensus 958 ~l-g~~v~~~~~~~l~~~~~~~~~~~~~~~l~~t~~G~i~~l~ 999 (1088)
|- ...|+++.- . .....++.++.+|.|...-
T Consensus 332 ~~~~~~v~~~~~---s--------~~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 332 HKCGAAIRQTSF---S--------RDSSILIAVCDDASIWRWD 363 (366)
T ss_dssp TTCCSCEEEEEE---C--------TTSSEEEEEETTSEEEEEE
T ss_pred cccCCceEEEEe---C--------CCCCeEEEEeCCCEEEEEE
Confidence 21 345555432 1 1345788889999987653
No 54
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=97.49 E-value=0.014 Score=67.17 Aligned_cols=76 Identities=16% Similarity=0.080 Sum_probs=49.8
Q ss_pred CceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCc-----------eEEecCCCC------------cCceeE
Q 001387 529 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNL-----------ITKEHLGGE------------IIPRSV 585 (1088)
Q Consensus 529 ~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~-----------~~~~~l~~~------------~~p~si 585 (1088)
...|+|+++.+ .+.+++.|.. ||.|.||++.+.+. ..... ... ....++
T Consensus 28 ~~~V~~v~~s~------~g~~la~g~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~V~~l 99 (447)
T 3dw8_B 28 ADIISTVEFNH------SGELLATGDK-GGRVVIFQQEQENKIQSHSRGEYNVYSTFQ-SHEPEFDYLKSLEIEEKINKI 99 (447)
T ss_dssp GGSEEEEEECS------SSSEEEEEET-TSEEEEEEECC-----CCCCCCEEEEEEEE-CCCCEEEGGGTEEECCCCCEE
T ss_pred cCcEEEEEECC------CCCEEEEEcC-CCeEEEEEecCCCCCCcccccceeEecccc-cccccccccccccccCceEEE
Confidence 46799999975 3578898888 99999999875431 11100 111 223455
Q ss_pred EeeeecCceEEEEEeCCCcEEEEEEec
Q 001387 586 LLCAFEGISYLLCALGDGHLLNFLLNM 612 (1088)
Q Consensus 586 ~~~~~~~~~~L~vgl~~G~l~~y~~~~ 612 (1088)
.+..-++...|+.+..||.+..|.+..
T Consensus 100 ~~~~~~~~~~l~s~s~d~~i~iw~~~~ 126 (447)
T 3dw8_B 100 RWLPQKNAAQFLLSTNDKTIKLWKISE 126 (447)
T ss_dssp EECCCCSSSEEEEEECSSCEEEEEEEE
T ss_pred EEcCCCCcceEEEeCCCCeEEEEeccc
Confidence 444322226899999999999999864
No 55
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=97.48 E-value=0.028 Score=62.19 Aligned_cols=194 Identities=8% Similarity=-0.031 Sum_probs=116.6
Q ss_pred CccCeEEEecCC---CEEEEEEeecCCCcCcceeEEEEEEeCCC-ceEE-EEEECCCCceEeEEEEEEEcCCCceEEEEE
Q 001387 713 EHPRRICHQEQS---RTFAICSLKNQSCAEESEMHFVRLLDDQT-FEFI-STYPLDTFEYGCSILSCSFSDDSNVYYCVG 787 (1088)
Q Consensus 713 ~tp~~i~y~~~~---~~~~v~~~~~~~~~~~~~~s~l~lid~~t-~~~i-~~~~~~~~E~v~si~~~~~~~~~~~~i~VG 787 (1088)
.....++++|.. +.++.++.+ +.|++.|..+ .+.+ ..+. .....+.+++ +.. ..++++.|
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~d----------g~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~---~~~-~~~~l~s~ 104 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWA----------NDVRCWEVQDSGQTIPKAQQ-MHTGPVLDVC---WSD-DGSKVFTA 104 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETT----------SEEEEEEECTTSCEEEEEEE-ECSSCEEEEE---ECT-TSSEEEEE
T ss_pred CceEEEEEcCCCCCceEEEEECCC----------CcEEEEEcCCCCceeEEEec-cccCCEEEEE---ECc-CCCEEEEE
Confidence 456778899885 554444432 5788988765 4444 2222 2334455554 333 35677777
Q ss_pred eeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEecc---ccCeEEEEE--CCEEEEEEeeeccCccccccccc
Q 001387 788 TAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNA---FNGKLLAAI--NQKIQLYKWMLRDDGTRELQSEC 862 (1088)
Q Consensus 788 T~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~---~~g~Lv~~~--g~~l~v~~~~~~~~~~~~L~~~~ 862 (1088)
+ ..|.|.+|++..++... .....++|++++- -++.++++. .+.|++|++. .+ +....
T Consensus 105 ~----------~dg~v~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~---~~--~~~~~- 166 (368)
T 3mmy_A 105 S----------CDKTAKMWDLSSNQAIQ--IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR---SS--NPMMV- 166 (368)
T ss_dssp E----------TTSEEEEEETTTTEEEE--EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSS---CS--SCSEE-
T ss_pred c----------CCCcEEEEEcCCCCcee--eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECC---CC--cEEEE-
Confidence 5 34899999988766543 4567899999985 355544433 3678887753 11 12111
Q ss_pred ccccceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeC-c----eEEEEccCCcEEEEe
Q 001387 863 GHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDD-D----IYLGAENNFNLFTVR 937 (1088)
Q Consensus 863 ~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~-~----~~l~~D~~gnl~~l~ 937 (1088)
+.....+.++....+.++++.....+.++..+.....+..+. ........+..+... . .++.+..+|.+.++.
T Consensus 167 -~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~ 244 (368)
T 3mmy_A 167 -LQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIE-SPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY 244 (368)
T ss_dssp -EECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECC-CSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEE
T ss_pred -EecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhcc-ccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEe
Confidence 122224566677788999999999988776554333333332 233334444444432 1 278888999999998
Q ss_pred eCCC
Q 001387 938 KNSE 941 (1088)
Q Consensus 938 ~~~~ 941 (1088)
.+..
T Consensus 245 ~~~~ 248 (368)
T 3mmy_A 245 INPP 248 (368)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8653
No 56
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=97.47 E-value=0.18 Score=54.43 Aligned_cols=277 Identities=12% Similarity=0.087 Sum_probs=142.2
Q ss_pred CceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEE
Q 001387 529 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNF 608 (1088)
Q Consensus 529 ~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y 608 (1088)
...|.|+++.| .+.+++.|.+ ||.+++|++.+.+.+...... .....++.+. .+..+|+.|..||.+..|
T Consensus 13 ~~~V~~~~fsp------~~~~l~s~~~-dg~v~lWd~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 13 SDRVKGIDFHP------TEPWVLTTLY-SGRVELWNYETQVEVRSIQVT-ETPVRAGKFI--ARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CSCEEEEEECS------SSSEEEEEET-TSEEEEEETTTTEEEEEEECC-SSCEEEEEEE--GGGTEEEEEETTSEEEEE
T ss_pred CCceEEEEECC------CCCEEEEEcC-CCcEEEEECCCCceeEEeecc-CCcEEEEEEe--CCCCEEEEECCCCEEEEE
Confidence 35799999976 3578888888 999999999765443322111 1233444433 245789999999999988
Q ss_pred EEecCCCccccceeeecCccceeEEEEEeCCceEEEEecCCceE-EEec-CC-cEE-EeecccccceeeeccCCCCCCCe
Q 001387 609 LLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTV-IYSS-NK-KLL-YSNVNLKEVSHMCPFNSAAFPDS 684 (1088)
Q Consensus 609 ~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~-i~~~-~~-~~~-~~~l~~~~i~~~~~f~~~~~~~~ 684 (1088)
.+... +. .....--..+|.-..+. .+...++..+..-.+ ++.- .+ .+. ...-+...+.++ .|+. ..+..
T Consensus 83 d~~~~--~~--~~~~~~h~~~v~~~~~~-~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v-~~~p-~~~~~ 155 (304)
T 2ynn_A 83 NYNTG--EK--VVDFEAHPDYIRSIAVH-PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV-AFNP-KDPST 155 (304)
T ss_dssp ETTTC--CE--EEEEECCSSCEEEEEEC-SSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEE-EECT-TCTTE
T ss_pred ECCCC--cE--EEEEeCCCCcEEEEEEc-CCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEE-EECC-CCCCE
Confidence 75432 11 01111112233222221 112223222322222 2211 11 111 111111222222 2221 11123
Q ss_pred EEEEe-CCeEEEEEEcCCCCeEEEEEeCCCccCeEEEec--CCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEE
Q 001387 685 LAIAK-EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQE--QSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYP 761 (1088)
Q Consensus 685 l~~~~-~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~--~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~ 761 (1088)
++... ++.+++-.+..........-.-......+.+.| +.+.++.++.+ ..|++.|..+.+.+..++
T Consensus 156 l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D----------~~i~iWd~~~~~~~~~~~ 225 (304)
T 2ynn_A 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD----------LTIKIWDYQTKSCVATLE 225 (304)
T ss_dssp EEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETT----------SEEEEEETTTTEEEEEEE
T ss_pred EEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCC----------CeEEEEeCCCCccceeeC
Confidence 44333 677888777544322111111123344566665 33344444322 579999999988877665
Q ss_pred CCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cC---eEEE
Q 001387 762 LDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NG---KLLA 837 (1088)
Q Consensus 762 ~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g---~Lv~ 837 (1088)
-.. ..+.++ .+.. ..++++.|. ..|.|.+|+....++.... ....+.+.+++.. .| +++.
T Consensus 226 ~h~-~~v~~~---~~~p-~~~~l~s~s----------~Dg~i~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~as 289 (304)
T 2ynn_A 226 GHM-SNVSFA---VFHP-TLPIIISGS----------EDGTLKIWNSSTYKVEKTL-NVGLERSWCIATHPTGRKNYIAS 289 (304)
T ss_dssp CCS-SCEEEE---EECS-SSSEEEEEE----------TTSCEEEEETTTCCEEEEE-CCSSSSEEEEEECTTCGGGCEEE
T ss_pred CCC-CCEEEE---EECC-CCCEEEEEc----------CCCeEEEEECCCCceeeec-cCCCccEEEEEECCCCCceEEEE
Confidence 332 233333 3443 345677665 3478999998765543222 1235678888744 23 3677
Q ss_pred EECCEEEEEEe
Q 001387 838 AINQKIQLYKW 848 (1088)
Q Consensus 838 ~~g~~l~v~~~ 848 (1088)
+..+.+.++.+
T Consensus 290 g~~~g~~~~~~ 300 (304)
T 2ynn_A 290 GFDNGFTVLSL 300 (304)
T ss_dssp EETTEEEEEEC
T ss_pred ecCCceEEEEe
Confidence 77788887775
No 57
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=97.46 E-value=0.052 Score=61.94 Aligned_cols=271 Identities=12% Similarity=0.132 Sum_probs=140.5
Q ss_pred eEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCC-CcCceeEEeeeecCceEEEEEeCCCcEEEEEE
Q 001387 532 ISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGG-EIIPRSVLLCAFEGISYLLCALGDGHLLNFLL 610 (1088)
Q Consensus 532 is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~-~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~ 610 (1088)
..+|+.++ .+.|+||+ |++|+||+..+.+......+.. .....++.+.+ +..+|.+|..||.+..|.+
T Consensus 108 ~~~l~wS~-------~n~lAvgl--d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fsp--dg~~lasgs~Dg~v~iWd~ 176 (420)
T 4gga_A 108 LNLVDWSS-------GNVLAVAL--DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK--EGNYLAVGTSSAEVQLWDV 176 (420)
T ss_dssp CBCEEECT-------TSEEEEEE--TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT--TSSEEEEEETTSCEEEEET
T ss_pred ceeEEECC-------CCEEEEEe--CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECC--CCCEEEEEECCCeEEEEEc
Confidence 45566642 56889985 7999999998766543333321 12345665543 4578999999999999876
Q ss_pred ecCCCccccceeeecCccceeEEEEEeCCceEEEEec-CCceEEEec-C-Cc--EEEeecccccceeeeccCCCCCCCeE
Q 001387 611 NMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAAS-DRPTVIYSS-N-KK--LLYSNVNLKEVSHMCPFNSAAFPDSL 685 (1088)
Q Consensus 611 ~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~-~~p~~i~~~-~-~~--~~~~~l~~~~i~~~~~f~~~~~~~~l 685 (1088)
.. +.. .+...-...++ ..+..++ .+++.| ....+...+ . .. +....-+...+..+ .+. .....+
T Consensus 177 ~~--~~~--~~~~~~h~~~v--~~~s~~~--~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~-~~~--~~g~~l 245 (420)
T 4gga_A 177 QQ--QKR--LRNMTSHSARV--GSLSWNS--YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGL-RWA--PDGRHL 245 (420)
T ss_dssp TT--TEE--EEEECCCSSCE--EEEEEET--TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEE-EEC--TTSSEE
T ss_pred CC--CcE--EEEEeCCCCce--EEEeeCC--CEEEEEeCCCceeEeeecccceeeEEecccccceeee-eec--CCCCee
Confidence 43 211 11111111121 2221111 233333 222222221 1 11 11111111222111 111 112234
Q ss_pred EEE-eCCeEEEEEEcCCCC--eEEEEE-eCCCccCeEEEecCCCEEE-EEEeecCCCcCcceeEEEEEEeCCCceEEEEE
Q 001387 686 AIA-KEGELTIGTIDDIQK--LHIRSI-PLGEHPRRICHQEQSRTFA-ICSLKNQSCAEESEMHFVRLLDDQTFEFISTY 760 (1088)
Q Consensus 686 ~~~-~~~~l~i~~l~~~~~--~~~~~i-~l~~tp~~i~y~~~~~~~~-v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~ 760 (1088)
+.. .++.+.+........ ...+.. .-......++++|....++ +++... -..|++.|..+++.+..+
T Consensus 246 ~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~--------D~~I~iwd~~t~~~~~~~ 317 (420)
T 4gga_A 246 ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS--------DRHIRIWNVCSGACLSAV 317 (420)
T ss_dssp EEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTT--------TCEEEEEETTTTEEEEEE
T ss_pred eeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecC--------CCEEEEEeCCccccceee
Confidence 333 367777777655431 122222 2234556778888655444 333221 157999999999888776
Q ss_pred ECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEE-EecCceeEeccc-cCe-EEE
Q 001387 761 PLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEK-ETKGAVYSLNAF-NGK-LLA 837 (1088)
Q Consensus 761 ~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~-~~~g~v~ai~~~-~g~-Lv~ 837 (1088)
... ..+.++.. .. ....+++|++. ..|.|++|++...+. +... .+.++|++++-- +|. |+.
T Consensus 318 ~~~--~~v~~~~~---~~-~~~~lv~~sg~--------~d~~I~iwd~~~~~~--v~~l~gH~~~V~~l~~spdg~~l~S 381 (420)
T 4gga_A 318 DAH--SQVCSILW---SP-HYKELISGHGF--------AQNQLVIWKYPTMAK--VAELKGHTSRVLSLTMSPDGATVAS 381 (420)
T ss_dssp ECS--SCEEEEEE---ET-TTTEEEEEECT--------TTCCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSCEEE
T ss_pred ccc--cceeeeee---cC-CCCeEEEEEec--------CCCEEEEEECCCCcE--EEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 543 34444432 22 24556666642 347899998865432 2322 367899999854 454 444
Q ss_pred EEC-CEEEEEEe
Q 001387 838 AIN-QKIQLYKW 848 (1088)
Q Consensus 838 ~~g-~~l~v~~~ 848 (1088)
|.. .+|+++++
T Consensus 382 ~s~D~tvriWdv 393 (420)
T 4gga_A 382 AAADETLRLWRC 393 (420)
T ss_dssp EETTTEEEEECC
T ss_pred EecCCeEEEEEC
Confidence 433 68888775
No 58
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.45 E-value=0.19 Score=56.30 Aligned_cols=261 Identities=13% Similarity=0.164 Sum_probs=142.1
Q ss_pred cEEEEecCCcceeeeeeCCCCCcEEEEEEC--CCEEEEEE-CCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCC
Q 001387 468 SVRLVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLAT-GGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENP 544 (1088)
Q Consensus 468 ~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~-~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~ 544 (1088)
.|++++.++++.+..+.. +..+.+.+.+ +..++++. .++.+..++...+++... ......+.++++.+
T Consensus 13 ~v~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~--~~~~~~v~~~~~sp----- 83 (391)
T 1l0q_A 13 NISVIDVTSNKVTATIPV--GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT--VPAGSSPQGVAVSP----- 83 (391)
T ss_dssp EEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE--EECSSSEEEEEECT-----
T ss_pred EEEEEECCCCeEEEEeec--CCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE--EECCCCccceEECC-----
Confidence 455666554444444332 2346666654 44565554 467777777665554332 33445788999865
Q ss_pred CCccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEE-EEEeCCCcEEEEEEecCCCccccceee
Q 001387 545 SYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYL-LCALGDGHLLNFLLNMKTGELTDRKKV 623 (1088)
Q Consensus 545 ~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L-~vgl~~G~l~~y~~~~~~~~l~~~~~~ 623 (1088)
....++++...++.|.+|++.+.+.+...... ..+.++.+.. +..+| +.+..+|.+..|.+. +++. .+..
T Consensus 84 -dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~--dg~~l~~~~~~~~~v~~~d~~--~~~~--~~~~ 154 (391)
T 1l0q_A 84 -DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG--KSPLGLALSP--DGKKLYVTNNGDKTVSVINTV--TKAV--INTV 154 (391)
T ss_dssp -TSSEEEEEETTTTEEEEEETTTTEEEEEEECS--SSEEEEEECT--TSSEEEEEETTTTEEEEEETT--TTEE--EEEE
T ss_pred -CCCEEEEEECCCCEEEEEECCCCeEEEEEeCC--CCcceEEECC--CCCEEEEEeCCCCEEEEEECC--CCcE--EEEE
Confidence 25677777665799999999875554332222 2455655443 23445 567778988877543 2322 1223
Q ss_pred ecCccceeEEEEEeCCceEEEEecCC-ceE-EEec-CCcEE-EeecccccceeeeccCCCCCCCeEEEEe----CCeEEE
Q 001387 624 SLGTQPITLRTFSSKNTTHVFAASDR-PTV-IYSS-NKKLL-YSNVNLKEVSHMCPFNSAAFPDSLAIAK----EGELTI 695 (1088)
Q Consensus 624 ~lG~~pv~l~~~~~~~~~~v~~~~~~-p~~-i~~~-~~~~~-~~~l~~~~i~~~~~f~~~~~~~~l~~~~----~~~l~i 695 (1088)
..+..|..+ .+. .+...+++.+.. -.+ ++.- .++.. ..+.. ..+.++ .|+. ..+.++... ++.+.+
T Consensus 155 ~~~~~~~~~-~~~-~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~-~~~~--~g~~l~~~~~~~~~~~v~~ 228 (391)
T 1l0q_A 155 SVGRSPKGI-AVT-PDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGI-AVNP--EGTKAYVTNVDKYFNTVSM 228 (391)
T ss_dssp ECCSSEEEE-EEC-TTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEE-EECT--TSSEEEEEEECSSCCEEEE
T ss_pred ecCCCcceE-EEC-CCCCEEEEEeCCCCEEEEEECCCCeEEEEEecC-CCccce-EECC--CCCEEEEEecCcCCCcEEE
Confidence 334444222 232 233455554322 222 2221 22221 11111 111111 1211 122344443 456666
Q ss_pred EEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECC
Q 001387 696 GTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD 763 (1088)
Q Consensus 696 ~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~ 763 (1088)
..+.. .-..+.++.+..|..++++|+.+.+++.+... ..++++|..+++.+..+...
T Consensus 229 ~d~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d---------~~v~v~d~~~~~~~~~~~~~ 285 (391)
T 1l0q_A 229 IDTGT--NKITARIPVGPDPAGIAVTPDGKKVYVALSFX---------NTVSVIDTATNTITATMAVG 285 (391)
T ss_dssp EETTT--TEEEEEEECCSSEEEEEECTTSSEEEEEETTT---------TEEEEEETTTTEEEEEEECS
T ss_pred EECCC--CeEEEEEecCCCccEEEEccCCCEEEEEcCCC---------CEEEEEECCCCcEEEEEECC
Confidence 55543 34567788888899999999988776665432 57999999998887776644
No 59
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=97.43 E-value=0.089 Score=58.06 Aligned_cols=120 Identities=11% Similarity=-0.007 Sum_probs=74.2
Q ss_pred CCcEEEEEECC------CEEEEEECCCeEEEEEEcCc-EEEEEeec---cCCceeEEEEeCCCCCCCCCccEEEEEEecC
Q 001387 488 GYSVNVATANA------SQVLLATGGGHLVYLEIGDG-ILTEVKHA---QLEYEISCLDINPIGENPSYSQIAAVGMWTD 557 (1088)
Q Consensus 488 ~~~I~~a~~~~------~~lvv~~~~~~l~~~~~~~~-~l~~~~~~---~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~ 557 (1088)
...|.+.+.++ ..++.+.+++.+.++.+..+ .+..+... .....|.|+++.+-.. ....++++|.. +
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~l~~~~~-d 94 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSN--TSHPLLAVAGS-R 94 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTT--TCCEEEEEEET-T
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCC--CCCCEEEEecC-C
Confidence 34677777663 34555555667777777653 33333222 2446789998865221 12467888877 9
Q ss_pred CEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEec
Q 001387 558 ISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNM 612 (1088)
Q Consensus 558 ~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~ 612 (1088)
|.|.+|++.+.+.+....- ......++.+.+ .+..+|+.|..||.+..|.+..
T Consensus 95 g~i~v~d~~~~~~~~~~~~-~~~~i~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~ 147 (366)
T 3k26_A 95 GIIRIINPITMQCIKHYVG-HGNAINELKFHP-RDPNLLLSVSKDHALRLWNIQT 147 (366)
T ss_dssp CEEEEECTTTCCEEEEEES-CCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTT
T ss_pred CEEEEEEchhceEeeeecC-CCCcEEEEEECC-CCCCEEEEEeCCCeEEEEEeec
Confidence 9999999987665443221 112344554432 1356789999999999987653
No 60
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=97.43 E-value=0.13 Score=55.98 Aligned_cols=282 Identities=13% Similarity=0.124 Sum_probs=143.0
Q ss_pred CcEEEEecCCcceeeeeeCCCCCcEEEEEEC--CCEEEEEEC-CCeEEEEEEcCcEE-EEEeeccCCceeEE-EEeCCCC
Q 001387 467 GSVRLVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLATG-GGHLVYLEIGDGIL-TEVKHAQLEYEISC-LDINPIG 541 (1088)
Q Consensus 467 ~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~~-~~~l~~~~~~~~~l-~~~~~~~l~~~is~-l~~~~~~ 541 (1088)
..|++++.++++....+..+. ... ..+.+ +..++++.. ++.+..+....+++ ... ......+.. +++.+
T Consensus 20 ~~v~~~d~~~~~~~~~~~~~~-~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~s~-- 93 (331)
T 3u4y_A 20 RRISFFSTDTLEILNQITLGY-DFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVA--IQEGQSSMADVDITP-- 93 (331)
T ss_dssp TEEEEEETTTCCEEEEEECCC-CEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEE--EEECSSCCCCEEECT--
T ss_pred CeEEEEeCcccceeeeEEccC-Ccc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEe--cccCCCCccceEECC--
Confidence 345566655544444444332 234 44443 445666654 55676666655543 211 112223334 77754
Q ss_pred CCCCCccEEEEEEecCC--EEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEE-EeCCCc-EEEEEEecCCCcc
Q 001387 542 ENPSYSQIAAVGMWTDI--SVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLC-ALGDGH-LLNFLLNMKTGEL 617 (1088)
Q Consensus 542 ~~~~~~~~~~vg~w~~~--~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~v-gl~~G~-l~~y~~~~~~~~l 617 (1088)
...+++++.+.++ .+.+|++.+.+.+...... ..|+++.+.+ +..+|++ +..++. +..|.++.. +.+
T Consensus 94 ----dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~sp--dg~~l~~~~~~~~~~i~~~~~~~~-g~~ 164 (331)
T 3u4y_A 94 ----DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP--YDAVGIAISP--NGNGLILIDRSSANTVRRFKIDAD-GVL 164 (331)
T ss_dssp ----TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC--TTEEEEEECT--TSSCEEEEEETTTTEEEEEEECTT-CCE
T ss_pred ----CCCEEEEecCCCCcccEEEEECCCCCeEEEEECC--CCccceEECC--CCCEEEEEecCCCceEEEEEECCC-CcE
Confidence 2456666656334 9999999876654433232 3566776554 2234554 456688 889988742 222
Q ss_pred ccceeeecCccceeEEEEEeCCceEEEEecCCceEE-EecCCcEEEeecccccceeeeccCCCCCCCeEEEEe--CCeEE
Q 001387 618 TDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI-YSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAK--EGELT 694 (1088)
Q Consensus 618 ~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~i-~~~~~~~~~~~l~~~~i~~~~~f~~~~~~~~l~~~~--~~~l~ 694 (1088)
...... .+-.+..|.-+ +..+++ .++++. ++.+.
T Consensus 165 ~~~~~~-------------------~~~~~~~~~~~~~spdg~------------------------~l~v~~~~~~~v~ 201 (331)
T 3u4y_A 165 FDTGQE-------------------FISGGTRPFNITFTPDGN------------------------FAFVANLIGNSIG 201 (331)
T ss_dssp EEEEEE-------------------EECSSSSEEEEEECTTSS------------------------EEEEEETTTTEEE
T ss_pred eecCCc-------------------cccCCCCccceEECCCCC------------------------EEEEEeCCCCeEE
Confidence 111000 00001111111 111111 112221 34455
Q ss_pred EEEEcCCCC-eEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceE--EEEEECC--CCce-E
Q 001387 695 IGTIDDIQK-LHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEF--ISTYPLD--TFEY-G 768 (1088)
Q Consensus 695 i~~l~~~~~-~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~--i~~~~~~--~~E~-v 768 (1088)
+..+..... -..+.++.+..|..++++|+.+.++++... ...|.++|..+++. +..+.-. .... .
T Consensus 202 v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~---------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
T 3u4y_A 202 ILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTES---------TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPL 272 (331)
T ss_dssp EEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSS---------EEEEEEEETTTTEEEEEEEEECCCCCCCGGG
T ss_pred EEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcC---------CCEEEEEECCCCceeeecccccccccCCCCc
Confidence 555443322 236778888899999999999976666432 25688999988876 4444321 1111 1
Q ss_pred eEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCce
Q 001387 769 CSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAV 825 (1088)
Q Consensus 769 ~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v 825 (1088)
.....+.+..++ .+++++.. ..|.+.+|++....+..+...+..|.+
T Consensus 273 ~~~~~~~~spdg-~~l~v~~~---------~~~~v~v~d~~~~~~~~~~~~~~~g~~ 319 (331)
T 3u4y_A 273 FGANQMALNKTE-TKLFISAN---------ISRELKVFTISGKVVGYVAGIEANGGI 319 (331)
T ss_dssp TTCCCEEECTTS-SEEEEEET---------TTTEEEEEETTSCEEEECTTCCCBSCE
T ss_pred ccccceEECCCC-CEEEEecC---------CCCcEEEEEecCCcccceecccccCCe
Confidence 111112344433 45555542 357899999877665555443444433
No 61
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.40 E-value=0.074 Score=58.19 Aligned_cols=280 Identities=16% Similarity=0.173 Sum_probs=144.2
Q ss_pred CCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCC-CcCceeEEeeeecCceEEEEEeCCCcEE
Q 001387 528 LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGG-EIIPRSVLLCAFEGISYLLCALGDGHLL 606 (1088)
Q Consensus 528 l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~-~~~p~si~~~~~~~~~~L~vgl~~G~l~ 606 (1088)
-...|.|+++.+-. ...+..++.|.+ |+.+++|++.+-+......+.. .....++.+. .+...+..|..||.+.
T Consensus 31 H~~~V~~v~~~~~~--~~~~~~l~tgs~-D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~--~~~~~l~s~s~D~~i~ 105 (321)
T 3ow8_A 31 HDDAIWSVAWGTNK--KENSETVVTGSL-DDLVKVWKWRDERLDLQWSLEGHQLGVVSVDIS--HTLPIAASSSLDAHIR 105 (321)
T ss_dssp SSSCEEEEEEC---------CEEEEEET-TSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC--SSSSEEEEEETTSEEE
T ss_pred CCCcEEEEEEecCC--CCCCCEEEEEcC-CCCEEEEECCCCCeeeeeeeccCCCCEEEEEEC--CCCCEEEEEeCCCcEE
Confidence 45789999986521 112567888877 9999999986533222222221 1223344333 2346788899999999
Q ss_pred EEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEecCCc-eEEEec-CCcEEEe-ecccccceeeeccCCCCCCC
Q 001387 607 NFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRP-TVIYSS-NKKLLYS-NVNLKEVSHMCPFNSAAFPD 683 (1088)
Q Consensus 607 ~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p-~~i~~~-~~~~~~~-~l~~~~i~~~~~f~~~~~~~ 683 (1088)
.+.+.. +.. .+....+..++.-..+. .+...+++.+..- ..++.- .++..+. ......+.++ .|+. ...
T Consensus 106 lWd~~~--~~~--~~~~~~~~~~~~~~~~s-pdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~-~~sp--dg~ 177 (321)
T 3ow8_A 106 LWDLEN--GKQ--IKSIDAGPVDAWTLAFS-PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSI-AYSP--DGK 177 (321)
T ss_dssp EEETTT--TEE--EEEEECCTTCCCCEEEC-TTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEE-EECT--TSS
T ss_pred EEECCC--CCE--EEEEeCCCccEEEEEEC-CCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEE-EECC--CCC
Confidence 887543 211 11222222222212221 1222333322222 222221 2222111 1111222222 2221 122
Q ss_pred eEEEEe-CCeEEEEEEcCCCCeEEEEEeC-CCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEE
Q 001387 684 SLAIAK-EGELTIGTIDDIQKLHIRSIPL-GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYP 761 (1088)
Q Consensus 684 ~l~~~~-~~~l~i~~l~~~~~~~~~~i~l-~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~ 761 (1088)
.++... ++.+++-.+.... ..+.+.- ...++.++++|+.+.++.++.+ ..|++.|..+.+.+..+.
T Consensus 178 ~lasg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~spd~~~l~s~s~d----------g~i~iwd~~~~~~~~~~~ 245 (321)
T 3ow8_A 178 YLASGAIDGIINIFDIATGK--LLHTLEGHAMPIRSLTFSPDSQLLVTASDD----------GYIKIYDVQHANLAGTLS 245 (321)
T ss_dssp EEEEEETTSCEEEEETTTTE--EEEEECCCSSCCCEEEECTTSCEEEEECTT----------SCEEEEETTTCCEEEEEC
T ss_pred EEEEEcCCCeEEEEECCCCc--EEEEEcccCCceeEEEEcCCCCEEEEEcCC----------CeEEEEECCCcceeEEEc
Confidence 344443 6777777765432 3344443 3456889999998877666533 469999988877765543
Q ss_pred CCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cCeEEEEEC
Q 001387 762 LDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAIN 840 (1088)
Q Consensus 762 ~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g~Lv~~~g 840 (1088)
-. ...+.+++ +.. ...+++.|. ..|.|.+|++..++..... ....++|++++-- +|..+++.|
T Consensus 246 ~h-~~~v~~~~---~sp-~~~~l~s~s----------~D~~v~iwd~~~~~~~~~~-~~h~~~v~~v~~s~~g~~l~s~~ 309 (321)
T 3ow8_A 246 GH-ASWVLNVA---FCP-DDTHFVSSS----------SDKSVKVWDVGTRTCVHTF-FDHQDQVWGVKYNGNGSKIVSVG 309 (321)
T ss_dssp CC-SSCEEEEE---ECT-TSSEEEEEE----------TTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEE
T ss_pred CC-CCceEEEE---ECC-CCCEEEEEe----------CCCcEEEEeCCCCEEEEEE-cCCCCcEEEEEECCCCCEEEEEe
Confidence 22 23344443 443 245677665 3478999998765543222 3467899998855 344444433
Q ss_pred --CEEEEEEe
Q 001387 841 --QKIQLYKW 848 (1088)
Q Consensus 841 --~~l~v~~~ 848 (1088)
++|++|+.
T Consensus 310 ~d~~i~vwd~ 319 (321)
T 3ow8_A 310 DDQEIHIYDC 319 (321)
T ss_dssp TTCCEEEEEC
T ss_pred CCCeEEEEeC
Confidence 56777663
No 62
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=97.35 E-value=0.066 Score=57.85 Aligned_cols=272 Identities=12% Similarity=0.119 Sum_probs=133.6
Q ss_pred eEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCC-CcCceeEEeeeecCceEEEEEeCCCcEEEEEE
Q 001387 532 ISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGG-EIIPRSVLLCAFEGISYLLCALGDGHLLNFLL 610 (1088)
Q Consensus 532 is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~-~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~ 610 (1088)
.+||+.++ .+.|++|+ |++|+||++.+.+.+....+.. .....++.+.+ +..+|+.|..||.+..|.+
T Consensus 28 ~~~l~WS~-------~~~lAvg~--D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~--~~~~l~sgs~Dg~v~iw~~ 96 (318)
T 4ggc_A 28 LNLVDWSS-------GNVLAVAL--DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK--EGNYLAVGTSSAEVQLWDV 96 (318)
T ss_dssp CBCEEECT-------TSEEEEEE--TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT--TSSEEEEEETTSEEEEEET
T ss_pred ceEEEECC-------CCEEEEEe--CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECC--CCCEEEEEECCCcEEEeec
Confidence 35777753 45888884 8999999998766544333321 12334554432 4578999999999988875
Q ss_pred ecCCCccccceeeecCccceeEEEEEeCCceEEEEe-cCCceEEE-ecC-Cc--EEEeecccccceeeeccCCCCCCCeE
Q 001387 611 NMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAA-SDRPTVIY-SSN-KK--LLYSNVNLKEVSHMCPFNSAAFPDSL 685 (1088)
Q Consensus 611 ~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~-~~~p~~i~-~~~-~~--~~~~~l~~~~i~~~~~f~~~~~~~~l 685 (1088)
.. ++. .+...-...++ ..+...+ .+++. +....+.. ... +. .....-+...+.... +. .....+
T Consensus 97 ~~--~~~--~~~~~~h~~~~--~~~~~~~--~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~l 165 (318)
T 4ggc_A 97 QQ--QKR--LRNMTSHSARV--GSLSWNS--YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR-WA--PDGRHL 165 (318)
T ss_dssp TT--TEE--EEEEECCSSCE--EEEEEET--TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE-EC--TTSSEE
T ss_pred CC--cee--EEEecCccceE--EEeecCC--CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEE-Ec--CCCCEE
Confidence 43 221 11111111111 1121111 22332 22222222 111 11 111111111222211 11 112234
Q ss_pred EEEe-CCeEEEEEEcCCCC---eEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEE
Q 001387 686 AIAK-EGELTIGTIDDIQK---LHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYP 761 (1088)
Q Consensus 686 ~~~~-~~~l~i~~l~~~~~---~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~ 761 (1088)
+... ++.+++-.+...+. ..............+.+.+..+.++...... ....+++.|..+........
T Consensus 166 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-------~~~~i~lwd~~~~~~~~~~~ 238 (318)
T 4ggc_A 166 ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT-------SDRHIRIWNVCSGACLSAVD 238 (318)
T ss_dssp EEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECT-------TTCEEEEEETTTCCEEEEEE
T ss_pred EEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecC-------CCCEEEEEeccccccccccc
Confidence 4433 67788777655331 1122222233445566666555444332221 12578899987776655444
Q ss_pred CCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEE-EecCceeEeccc-cCeEEEEE
Q 001387 762 LDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEK-ETKGAVYSLNAF-NGKLLAAI 839 (1088)
Q Consensus 762 ~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~-~~~g~v~ai~~~-~g~Lv~~~ 839 (1088)
.. ..+.++. +.. ....++++++. ..|.|++|++..++. +... .+.++|++++-- +|.++++.
T Consensus 239 ~~--~~v~~~~---~~~-~~~~~~~~sg~--------~d~~i~iwd~~~~~~--~~~l~gH~~~V~~l~~spdg~~l~S~ 302 (318)
T 4ggc_A 239 AH--SQVCSIL---WSP-HYKELISGHGF--------AQNQLVIWKYPTMAK--VAELKGHTSRVLSLTMSPDGATVASA 302 (318)
T ss_dssp CS--SCEEEEE---EET-TTTEEEEEECT--------TTCCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred ce--eeeeeee---ecc-cccceEEEEEc--------CCCEEEEEECCCCcE--EEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 32 2233332 222 24455555532 357899999875543 2222 367899998854 45444433
Q ss_pred --CCEEEEEEe
Q 001387 840 --NQKIQLYKW 848 (1088)
Q Consensus 840 --g~~l~v~~~ 848 (1088)
.++|+++++
T Consensus 303 s~D~~v~iWd~ 313 (318)
T 4ggc_A 303 AADETLRLWRC 313 (318)
T ss_dssp ETTTEEEEECC
T ss_pred ecCCeEEEEEC
Confidence 367888764
No 63
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=97.33 E-value=0.012 Score=66.75 Aligned_cols=266 Identities=11% Similarity=0.084 Sum_probs=140.7
Q ss_pred CCEEEEEECCCCCceE--EecCC-CCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCc--c-ccceeeecCccce
Q 001387 557 DISVRIFSLPDLNLIT--KEHLG-GEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGE--L-TDRKKVSLGTQPI 630 (1088)
Q Consensus 557 ~~~i~i~~l~~l~~~~--~~~l~-~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~--l-~~~~~~~lG~~pv 630 (1088)
+|.+.+|++....... ...+. ......++.+.+. +..+|+.|..||.+..|.+...... + .......--..++
T Consensus 56 ~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~-~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v 134 (402)
T 2aq5_A 56 GGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPH-NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV 134 (402)
T ss_dssp SCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTT-CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCE
T ss_pred CCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCC-CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeE
Confidence 8999999986421110 00111 1123344544321 3568899999999999987653210 0 1111111112344
Q ss_pred eEEEEEeCCceEEEEecCCc-eEEEec-CCcEEEeec----ccccceeeeccCCCCCCCeEEEEe-CCeEEEEEEcCCCC
Q 001387 631 TLRTFSSKNTTHVFAASDRP-TVIYSS-NKKLLYSNV----NLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQK 703 (1088)
Q Consensus 631 ~l~~~~~~~~~~v~~~~~~p-~~i~~~-~~~~~~~~l----~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~ 703 (1088)
.-..+...+...++..+..- ..++.- .++.. ..+ +...+.+++ |+. ..+.++... ++.+++..+....
T Consensus 135 ~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~-~~~--~~~~l~~~~~d~~i~iwd~~~~~- 209 (402)
T 2aq5_A 135 GIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAV-LTLGPDVHPDTIYSVD-WSR--DGALICTSCRDKRVRVIEPRKGT- 209 (402)
T ss_dssp EEEEECSSBTTEEEEEETTSCEEEEETTTTEEE-EEECTTTCCSCEEEEE-ECT--TSSCEEEEETTSEEEEEETTTTE-
T ss_pred EEEEECcCCCCEEEEEcCCCEEEEEECCCCCcc-EEEecCCCCCceEEEE-ECC--CCCEEEEEecCCcEEEEeCCCCc-
Confidence 33333212212333333322 223221 22221 111 122333222 221 122354444 6788888776533
Q ss_pred eEEEEE-eC--CCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceE-EEEEECCCCceEeEEEEEEEcCC
Q 001387 704 LHIRSI-PL--GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEF-ISTYPLDTFEYGCSILSCSFSDD 779 (1088)
Q Consensus 704 ~~~~~i-~l--~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~-i~~~~~~~~E~v~si~~~~~~~~ 779 (1088)
..+.+ .- +..+..++++|+.+.++++.... ....|+++|..+++. +....++....+.++ .+..+
T Consensus 210 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~---~~s~~ 278 (402)
T 2aq5_A 210 -VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM-------SERQVALWDTKHLEEPLSLQELDTSSGVLLP---FFDPD 278 (402)
T ss_dssp -EEEEEECSSCSSSCCEEEECSTTEEEEEEECTT-------CCEEEEEEETTBCSSCSEEEECCCCSSCEEE---EEETT
T ss_pred -eeeeeccCCCCCcceEEEEcCCCcEEEEeccCC-------CCceEEEEcCccccCCceEEeccCCCceeEE---EEcCC
Confidence 34444 22 23378999999877666553211 136899999877653 444555555555554 33443
Q ss_pred CceEEEEEeeeeCCCCCCCcceEEEEEEEeCCe--EEEEEEEEecCceeEeccc-cCeEEEEECCEEEEEEee
Q 001387 780 SNVYYCVGTAYVLPEENEPTKGRILVFIVEDGK--LQLIAEKETKGAVYSLNAF-NGKLLAAINQKIQLYKWM 849 (1088)
Q Consensus 780 ~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~k--l~~~~~~~~~g~v~ai~~~-~g~Lv~~~g~~l~v~~~~ 849 (1088)
++.+++.|. ..|.|.+|++..++ +..+......++|.+++-. ++.++++.+..+++|++.
T Consensus 279 ~~~l~~~g~----------~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~ 341 (402)
T 2aq5_A 279 TNIVYLCGK----------GDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIARFYKLH 341 (402)
T ss_dssp TTEEEEEET----------TCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGTEEEEEEEEE
T ss_pred CCEEEEEEc----------CCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceecceeEEEEEcC
Confidence 444444453 34799999999766 7777777778999999866 345555555677887764
No 64
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=97.33 E-value=0.13 Score=56.32 Aligned_cols=271 Identities=10% Similarity=0.042 Sum_probs=144.2
Q ss_pred CCcEEEEEEC--CCEEEEEECCCeEEEEEEcCcE--EEEEeeccCCceeEEEEeCCCCCCCCCcc-EEEEEEecCCEEEE
Q 001387 488 GYSVNVATAN--ASQVLLATGGGHLVYLEIGDGI--LTEVKHAQLEYEISCLDINPIGENPSYSQ-IAAVGMWTDISVRI 562 (1088)
Q Consensus 488 ~~~I~~a~~~--~~~lvv~~~~~~l~~~~~~~~~--l~~~~~~~l~~~is~l~~~~~~~~~~~~~-~~~vg~w~~~~i~i 562 (1088)
...|.+.+.+ +..++.+..++.+..++++.++ ............|.|+++.+ ... +++.|.. +|.+.+
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~l~~~~~-dg~i~~ 83 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID------NTDLQIYVGTV-QGEILK 83 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE------SSSEEEEEEET-TSCEEE
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECC------CCCcEEEEEcC-CCeEEE
Confidence 3467777754 5577777778888888887633 11222234567799998864 256 7888887 999999
Q ss_pred EEC-CCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCc-----cccceeeecCccceeEEEEE
Q 001387 563 FSL-PDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGE-----LTDRKKVSLGTQPITLRTFS 636 (1088)
Q Consensus 563 ~~l-~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~-----l~~~~~~~lG~~pv~l~~~~ 636 (1088)
|++ ...+..............++.+.+ ..+++.+..||.+..|.+....+. -...+.... ..++ ..+.
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~v--~~~~ 157 (342)
T 1yfq_A 84 VDLIGSPSFQALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKV-KNKI--FTMD 157 (342)
T ss_dssp ECSSSSSSEEECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSS-CCCE--EEEE
T ss_pred EEeccCCceEeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEee-CCce--EEEE
Confidence 999 765442111100122345555554 467889999999998876531000 000011111 1222 2222
Q ss_pred eCCceEEEEecCCc-eEEEecCC--c--EEEeec-ccccceeeeccCCCCCCCeEEEEe-CCeEEEEEEcCC------CC
Q 001387 637 SKNTTHVFAASDRP-TVIYSSNK--K--LLYSNV-NLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDI------QK 703 (1088)
Q Consensus 637 ~~~~~~v~~~~~~p-~~i~~~~~--~--~~~~~l-~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~------~~ 703 (1088)
.... .+++.+... ..++.-+. . ...... ....+.+++ |+. ...+.++... ++.+.+-.++.. ..
T Consensus 158 ~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~-~~~-~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~ 234 (342)
T 1yfq_A 158 TNSS-RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVA-LLP-KEQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234 (342)
T ss_dssp ECSS-EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEE-ECS-GGGCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred ecCC-cEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEE-ECC-CCCCEEEEEecCCcEEEEEEcCCCccccccc
Confidence 2222 244444333 33332222 1 111111 112232222 211 0123344444 677888777654 22
Q ss_pred eEEEEEeC--------CCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEE
Q 001387 704 LHIRSIPL--------GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCS 775 (1088)
Q Consensus 704 ~~~~~i~l--------~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~ 775 (1088)
...-+..- ...+..++++|..+.++.++.+ +.|+++|..+++.+..+.-.....+.+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----------g~i~vwd~~~~~~~~~~~~~h~~~v~~~~--- 301 (342)
T 1yfq_A 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD----------GIISCWNLQTRKKIKNFAKFNEDSVVKIA--- 301 (342)
T ss_dssp CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT----------SCEEEEETTTTEEEEECCCCSSSEEEEEE---
T ss_pred ceeeecccccccccccceeEEEEEEcCCCCEEEEecCC----------ceEEEEcCccHhHhhhhhcccCCCceEec---
Confidence 11111111 1267788999988877766533 46999999999887654322134566665
Q ss_pred EcCCCceEEEEEeee
Q 001387 776 FSDDSNVYYCVGTAY 790 (1088)
Q Consensus 776 ~~~~~~~~i~VGT~~ 790 (1088)
. ...+++.|+..
T Consensus 302 -~--~~~~l~s~s~D 313 (342)
T 1yfq_A 302 -C--SDNILCLATSD 313 (342)
T ss_dssp -E--CSSEEEEEEEC
T ss_pred -C--CCCeEEEEecC
Confidence 2 35678877753
No 65
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=97.33 E-value=0.0039 Score=71.92 Aligned_cols=297 Identities=15% Similarity=0.100 Sum_probs=144.9
Q ss_pred CCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEec-CCCCcCceeEEeeeecCceEEEEEeCCCcEE
Q 001387 528 LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEH-LGGEIIPRSVLLCAFEGISYLLCALGDGHLL 606 (1088)
Q Consensus 528 l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~-l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~ 606 (1088)
.+..|+||++.|.. ..++++|.. ||.|.||++..-+...... ........++.+.+. +..+|+.|..||.+.
T Consensus 118 ~~~~V~~l~~~P~~-----~~~lasGs~-dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~-~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 118 FDRRATSLAWHPTH-----PSTVAVGSK-GGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL-NTNQFYASSMEGTTR 190 (435)
T ss_dssp CSSCEEEEEECSSC-----TTCEEEEET-TSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS-CTTEEEEECSSSCEE
T ss_pred CCCCEEEEEEeCCC-----CCEEEEEeC-CCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC-CCCEEEEEeCCCEEE
Confidence 34569999997632 468899988 9999999986533222111 122234456655432 345788899999999
Q ss_pred EEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEecCCceEEEec-CCc-EEEeecccccceeeeccCCCCCCCe
Q 001387 607 NFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSS-NKK-LLYSNVNLKEVSHMCPFNSAAFPDS 684 (1088)
Q Consensus 607 ~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~i~~~-~~~-~~~~~l~~~~i~~~~~f~~~~~~~~ 684 (1088)
.|.+.. +.+.......-...++.-..+. .+...+++.+....+...+ +++ +.-...+...+.+++ |+. ..+..
T Consensus 191 iwd~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~-~~p-~~~~~ 265 (435)
T 4e54_B 191 LQDFKG--NILRVFASSDTINIWFCSLDVS-ASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVA-LNP-CCDWF 265 (435)
T ss_dssp EEETTS--CEEEEEECCSSCSCCCCCEEEE-TTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEE-ECT-TCSSE
T ss_pred EeeccC--CceeEEeccCCCCccEEEEEEC-CCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeee-ecC-CCceE
Confidence 886532 1111000000001111111121 1222233333222222222 222 110111112333322 221 11122
Q ss_pred EEEEe-CCeEEEEEEcCCCCe--EEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEE
Q 001387 685 LAIAK-EGELTIGTIDDIQKL--HIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYP 761 (1088)
Q Consensus 685 l~~~~-~~~l~i~~l~~~~~~--~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~ 761 (1088)
++... ++.+++-.+...... ......-...+..++++|+.+.++.++.+ ..|++.|..+++......
T Consensus 266 ~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D----------~~i~iwd~~~~~~~~~~~ 335 (435)
T 4e54_B 266 LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQK----------SEIRVYSASQWDCPLGLI 335 (435)
T ss_dssp EEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESS----------SCEEEEESSSSSSEEEEC
T ss_pred EEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCC----------CEEEEEECCCCccceEEe
Confidence 33333 577777776543211 00111112345677888888877766543 468999988887665443
Q ss_pred CCCCc---eEeEEEEEEEcCCCceEEEEEeeeeCCC--CCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc--cC-
Q 001387 762 LDTFE---YGCSILSCSFSDDSNVYYCVGTAYVLPE--ENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF--NG- 833 (1088)
Q Consensus 762 ~~~~E---~v~si~~~~~~~~~~~~i~VGT~~~~~~--e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~--~g- 833 (1088)
-.++. ....+.. .+. ....++++|....... -.....+.|.+|++..+++.........++|.+++.| +|
T Consensus 336 ~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~ 413 (435)
T 4e54_B 336 PHPHRHFQHLTPIKA-AWH-PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGD 413 (435)
T ss_dssp CCCCCCCSSSCCCBC-EEC-SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSS
T ss_pred cccccccccceeEEE-EEc-CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCC
Confidence 22221 1111111 111 2345677765421100 0111234688898776655433333456778887766 34
Q ss_pred eEEEEECCEEEEEEe
Q 001387 834 KLLAAINQKIQLYKW 848 (1088)
Q Consensus 834 ~Lv~~~g~~l~v~~~ 848 (1088)
.|+.|.+.+|+++++
T Consensus 414 ~lasg~d~~i~iW~~ 428 (435)
T 4e54_B 414 TLASAMGYHILIWSQ 428 (435)
T ss_dssp CEEEECSSEEEECCC
T ss_pred EEEEEcCCcEEEEEC
Confidence 466677788887554
No 66
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=97.32 E-value=0.31 Score=53.88 Aligned_cols=271 Identities=17% Similarity=0.188 Sum_probs=147.6
Q ss_pred ccEEEEEEecC---CEEEEEECCC--CCceEEecCCCCcCceeEEeeeecCceEEEEEeCC----CcEEEEEEecCCCcc
Q 001387 547 SQIAAVGMWTD---ISVRIFSLPD--LNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGD----GHLLNFLLNMKTGEL 617 (1088)
Q Consensus 547 ~~~~~vg~w~~---~~i~i~~l~~--l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~----G~l~~y~~~~~~~~l 617 (1088)
..++.||++.. +.+.+|.++. -++...... ....|..+.+.+ +..+|+++..+ |.+..|.++..++.+
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~sp--dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~ 89 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSA--DGKFVYSVNEFSKDQAAVSAFAFDKEKGTL 89 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECT--TSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECC--CCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence 45788998853 5899998742 222111111 223566665553 34567776664 899999999866665
Q ss_pred ccceeee-cCccceeEEEEEeCCceEEEEec--CCceEEEec--CCcEE----Eeeccc-ccc------e--eeeccCCC
Q 001387 618 TDRKKVS-LGTQPITLRTFSSKNTTHVFAAS--DRPTVIYSS--NKKLL----YSNVNL-KEV------S--HMCPFNSA 679 (1088)
Q Consensus 618 ~~~~~~~-lG~~pv~l~~~~~~~~~~v~~~~--~~p~~i~~~--~~~~~----~~~l~~-~~i------~--~~~~f~~~ 679 (1088)
....... .|..|..+.. +...+++.+ +....++.- .+.+. ...... .+. . ....|
T Consensus 90 ~~~~~~~~~~~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--- 162 (361)
T 3scy_A 90 HLLNTQKTMGADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRI--- 162 (361)
T ss_dssp EEEEEEECSSSCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEE---
T ss_pred EEeeEeccCCCCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEE---
Confidence 4433333 3456665542 234455553 222222221 12111 000000 000 0 00111
Q ss_pred CCCCe--EEEEe--CCeEEEEEEcCCCC------e------EEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCccee
Q 001387 680 AFPDS--LAIAK--EGELTIGTIDDIQK------L------HIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEM 743 (1088)
Q Consensus 680 ~~~~~--l~~~~--~~~l~i~~l~~~~~------~------~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~ 743 (1088)
.|++ +++++ ++.+.+..++.... + .....+.+..|+.++++|+.+.++++....
T Consensus 163 -spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~--------- 232 (361)
T 3scy_A 163 -TPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIG--------- 232 (361)
T ss_dssp -CTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT---------
T ss_pred -CCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCC---------
Confidence 1333 44444 57888888886543 3 233455677899999999998776665322
Q ss_pred EEEEEEeCCCce--EEEEEECCCC--ceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEe--CCeEEEEE
Q 001387 744 HFVRLLDDQTFE--FISTYPLDTF--EYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE--DGKLQLIA 817 (1088)
Q Consensus 744 s~l~lid~~t~~--~i~~~~~~~~--E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~--~~kl~~~~ 817 (1088)
..|.++|..+.+ .+..+...+. ..+. .+.+..+++ +++++... ..+++.+|++. .++++.+.
T Consensus 233 ~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~---~i~~spdg~-~l~v~~~~--------~~~~i~v~~~~~~~g~~~~~~ 300 (361)
T 3scy_A 233 GTVIAFRYADGMLDEIQTVAADTVNAQGSG---DIHLSPDGK-YLYASNRL--------KADGVAIFKVDETNGTLTKVG 300 (361)
T ss_dssp CEEEEEEEETTEEEEEEEEESCSSCCCCEE---EEEECTTSS-EEEEEECS--------SSCEEEEEEECTTTCCEEEEE
T ss_pred CeEEEEEecCCceEEeEEEecCCCCCCCcc---cEEECCCCC-EEEEECCC--------CCCEEEEEEEcCCCCcEEEee
Confidence 457777765443 3444443222 2232 334554444 55554320 14789999996 56787777
Q ss_pred EEEecCceeEeccc-cC-eEEEEE--CCEEEEEEee
Q 001387 818 EKETKGAVYSLNAF-NG-KLLAAI--NQKIQLYKWM 849 (1088)
Q Consensus 818 ~~~~~g~v~ai~~~-~g-~Lv~~~--g~~l~v~~~~ 849 (1088)
.......+.+++-- +| +|+++. ++.+.+|.++
T Consensus 301 ~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 301 YQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred EecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 66654566666533 34 577665 4789999885
No 67
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=97.31 E-value=0.2 Score=56.87 Aligned_cols=276 Identities=11% Similarity=0.116 Sum_probs=145.6
Q ss_pred CcEEEEEEC--CCEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECC
Q 001387 489 YSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLP 566 (1088)
Q Consensus 489 ~~I~~a~~~--~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~ 566 (1088)
..|.+.+.+ +..++.+..++.+...++..+++...- ......|.|+++.+ .+.+++.|.+ |+++++|++.
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l-~~h~~~V~~v~~~~------~~~~l~sgs~-D~~i~iwd~~ 180 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDH------SGKLLASCSA-DMTIKLWDFQ 180 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECT------TSSEEEEEET-TSCCCEEETT
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEE-eccCCcEEEEEEcC------CCCEEEEEeC-CCeEEEEeCC
Confidence 357777765 346666666788877777665432211 12345789999865 2568888888 9999999998
Q ss_pred CCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEe
Q 001387 567 DLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAA 646 (1088)
Q Consensus 567 ~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~ 646 (1088)
+.+.+.... .......++.+.+ +..+|+.|..||.+..|.+... .. .+...-...++....+. .+...++..
T Consensus 181 ~~~~~~~~~-~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~--~~--~~~~~~h~~~v~~~~~~-~~g~~l~s~ 252 (410)
T 1vyh_C 181 GFECIRTMH-GHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTG--YC--VKTFTGHREWVRMVRPN-QDGTLIASC 252 (410)
T ss_dssp SSCEEECCC-CCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTC--CE--EEEEECCSSCEEEEEEC-TTSSEEEEE
T ss_pred CCceeEEEc-CCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCC--cE--EEEEeCCCccEEEEEEC-CCCCEEEEE
Confidence 765542211 1112334554443 3468899999999998876432 11 11111112234333332 222333333
Q ss_pred c-CCceEEEec-CCcEEE-eecccccceeeeccCCCC-----------------C-CCeEEEEe-CCeEEEEEEcCCCCe
Q 001387 647 S-DRPTVIYSS-NKKLLY-SNVNLKEVSHMCPFNSAA-----------------F-PDSLAIAK-EGELTIGTIDDIQKL 704 (1088)
Q Consensus 647 ~-~~p~~i~~~-~~~~~~-~~l~~~~i~~~~~f~~~~-----------------~-~~~l~~~~-~~~l~i~~l~~~~~~ 704 (1088)
+ +....++.- .++... ..-+...+.+++ |+... . ...++... ++.+++-.+... .
T Consensus 253 s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~--~ 329 (410)
T 1vyh_C 253 SNDQTVRVWVVATKECKAELREHRHVVECIS-WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG--M 329 (410)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEE-ECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT--E
T ss_pred cCCCeEEEEECCCCceeeEecCCCceEEEEE-EcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC--c
Confidence 3 333333321 122111 011112222211 11100 0 12233333 677887776543 2
Q ss_pred EEEEEeC-CCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceE
Q 001387 705 HIRSIPL-GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVY 783 (1088)
Q Consensus 705 ~~~~i~l-~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~ 783 (1088)
..+.+.- ...++.++++|..+.++.++.+ ..|++.|..+++.+..+.-. ...+.++. +.. ..++
T Consensus 330 ~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D----------~~i~vwd~~~~~~~~~~~~h-~~~v~~l~---~~~-~~~~ 394 (410)
T 1vyh_C 330 CLMTLVGHDNWVRGVLFHSGGKFILSCADD----------KTLRVWDYKNKRCMKTLNAH-EHFVTSLD---FHK-TAPY 394 (410)
T ss_dssp EEEEEECCSSCEEEEEECSSSSCEEEEETT----------TEEEEECCTTSCCCEEEECC-SSCEEEEE---ECS-SSSC
T ss_pred eEEEEECCCCcEEEEEEcCCCCEEEEEeCC----------CeEEEEECCCCceEEEEcCC-CCcEEEEE---EcC-CCCE
Confidence 3344432 3346788999988877665533 47999998888776665432 23455554 332 3456
Q ss_pred EEEEeeeeCCCCCCCcceEEEEEEE
Q 001387 784 YCVGTAYVLPEENEPTKGRILVFIV 808 (1088)
Q Consensus 784 i~VGT~~~~~~e~~~~~Gri~v~~i 808 (1088)
++.|. .-|.|.+|++
T Consensus 395 l~sgs----------~D~~i~vW~~ 409 (410)
T 1vyh_C 395 VVTGS----------VDQTVKVWEC 409 (410)
T ss_dssp EEEEE----------TTSEEEEEC-
T ss_pred EEEEe----------CCCcEEEEeC
Confidence 77665 3478888864
No 68
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=97.30 E-value=0.035 Score=61.37 Aligned_cols=162 Identities=6% Similarity=0.009 Sum_probs=96.5
Q ss_pred CccCeEEEec--CCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeee
Q 001387 713 EHPRRICHQE--QSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAY 790 (1088)
Q Consensus 713 ~tp~~i~y~~--~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~ 790 (1088)
+.+..+.++| ..+.++.++.+ +.+++.|..+.+.+..........+.|++ +.. ...+++.|+
T Consensus 126 ~~v~~~~~~~~~~~~~l~s~s~d----------g~i~~wd~~~~~~~~~~~~~~~~~i~~~~---~~p-dg~~lasg~-- 189 (343)
T 3lrv_A 126 NEIIYMYGHNEVNTEYFIWADNR----------GTIGFQSYEDDSQYIVHSAKSDVEYSSGV---LHK-DSLLLALYS-- 189 (343)
T ss_dssp SCEEEEECCC---CCEEEEEETT----------CCEEEEESSSSCEEEEECCCSSCCCCEEE---ECT-TSCEEEEEC--
T ss_pred CCEEEEEcCCCCCCCEEEEEeCC----------CcEEEEECCCCcEEEEEecCCCCceEEEE---ECC-CCCEEEEEc--
Confidence 3466788888 76766655533 47999999888876555455454566654 333 356888886
Q ss_pred eCCCCCCCcceEEEEEEEeCCeEE-EEEEEEecCceeEeccc-cC-eEEEEECCEEEEEEeeeccCcccccccccccc--
Q 001387 791 VLPEENEPTKGRILVFIVEDGKLQ-LIAEKETKGAVYSLNAF-NG-KLLAAINQKIQLYKWMLRDDGTRELQSECGHH-- 865 (1088)
Q Consensus 791 ~~~~e~~~~~Gri~v~~i~~~kl~-~~~~~~~~g~v~ai~~~-~g-~Lv~~~g~~l~v~~~~~~~~~~~~L~~~~~~~-- 865 (1088)
..|.|.+|++..++.. ......+.++|++++-- +| +|+++....|++|++. . + +.+.....+.
T Consensus 190 --------~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~--~-~-~~~~~~~~~~~~ 257 (343)
T 3lrv_A 190 --------PDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLR--K-D-VGTLAYPTYTIP 257 (343)
T ss_dssp --------TTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETT--S-S-TTCBSSCCCBC-
T ss_pred --------CCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcC--C-C-Ccceeecccccc
Confidence 3489999999855432 22222357899999854 34 4666666778887652 1 1 1111111110
Q ss_pred -cce--EEEEEEEeCCEEEEEec-cccEEEEEEeccCCeEE
Q 001387 866 -GHI--LALYVQTRGDFIVVGDL-MKSISLLIYKHEEGAIE 902 (1088)
Q Consensus 866 -~~~--~~~~l~~~~~~I~vgD~-~~Sv~~~~~~~~~~~l~ 902 (1088)
... ..++....+.++++|.. -..+.++.|+.......
T Consensus 258 ~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~ 298 (343)
T 3lrv_A 258 EFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWT 298 (343)
T ss_dssp ----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEE
T ss_pred cccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceE
Confidence 111 12334445779999777 77888888865544443
No 69
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.30 E-value=0.24 Score=55.39 Aligned_cols=214 Identities=11% Similarity=0.122 Sum_probs=124.0
Q ss_pred CCeEEEEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEe
Q 001387 690 EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGC 769 (1088)
Q Consensus 690 ~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~ 769 (1088)
++.+.+-.+.. .-..+.++.+..|..++++|+.+.+++..... ..|+++|..+++.+..+.... .+.
T Consensus 11 d~~v~v~d~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d---------~~i~v~d~~~~~~~~~~~~~~--~v~ 77 (391)
T 1l0q_A 11 SDNISVIDVTS--NKVTATIPVGSNPMGAVISPDGTKVYVANAHS---------NDVSIIDTATNNVIATVPAGS--SPQ 77 (391)
T ss_dssp TTEEEEEETTT--TEEEEEEECSSSEEEEEECTTSSEEEEEEGGG---------TEEEEEETTTTEEEEEEECSS--SEE
T ss_pred CCEEEEEECCC--CeEEEEeecCCCcceEEECCCCCEEEEECCCC---------CeEEEEECCCCeEEEEEECCC--Ccc
Confidence 46677666554 33556677778899999999988776665432 579999999999888776654 555
Q ss_pred EEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cC-eEEEEEC--CEEEE
Q 001387 770 SILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NG-KLLAAIN--QKIQL 845 (1088)
Q Consensus 770 si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g-~Lv~~~g--~~l~v 845 (1088)
+++ +..+ .++++++.. ..|.|++|++..++... .....+.+.+++-- +| +|+++.+ +.|++
T Consensus 78 ~~~---~spd-g~~l~~~~~---------~~~~v~v~d~~~~~~~~--~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~ 142 (391)
T 1l0q_A 78 GVA---VSPD-GKQVYVTNM---------ASSTLSVIDTTSNTVAG--TVKTGKSPLGLALSPDGKKLYVTNNGDKTVSV 142 (391)
T ss_dssp EEE---ECTT-SSEEEEEET---------TTTEEEEEETTTTEEEE--EEECSSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred ceE---ECCC-CCEEEEEEC---------CCCEEEEEECCCCeEEE--EEeCCCCcceEEECCCCCEEEEEeCCCCEEEE
Confidence 443 4443 345555431 34789999987665433 23345667777644 34 4645543 67777
Q ss_pred EEeeeccCcccccccccccccceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCc-eE
Q 001387 846 YKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDD-IY 924 (1088)
Q Consensus 846 ~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~-~~ 924 (1088)
++.. .+ +.............+.....+++++++...++- +..|+....+....... ...+.++.+-.++ .+
T Consensus 143 ~d~~---~~--~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~-v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l 214 (391)
T 1l0q_A 143 INTV---TK--AVINTVSVGRSPKGIAVTPDGTKVYVANFDSMS-ISVIDTVTNSVIDTVKV--EAAPSGIAVNPEGTKA 214 (391)
T ss_dssp EETT---TT--EEEEEEECCSSEEEEEECTTSSEEEEEETTTTE-EEEEETTTTEEEEEEEC--SSEEEEEEECTTSSEE
T ss_pred EECC---CC--cEEEEEecCCCcceEEECCCCCEEEEEeCCCCE-EEEEECCCCeEEEEEec--CCCccceEECCCCCEE
Confidence 6642 12 222211111122223333346677666555443 33467665554433322 3355566665454 45
Q ss_pred EEEc---cCCcEEEEeeC
Q 001387 925 LGAE---NNFNLFTVRKN 939 (1088)
Q Consensus 925 l~~D---~~gnl~~l~~~ 939 (1088)
++++ .++.+.++...
T Consensus 215 ~~~~~~~~~~~v~~~d~~ 232 (391)
T 1l0q_A 215 YVTNVDKYFNTVSMIDTG 232 (391)
T ss_dssp EEEEECSSCCEEEEEETT
T ss_pred EEEecCcCCCcEEEEECC
Confidence 5555 67888888754
No 70
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.28 E-value=0.087 Score=60.35 Aligned_cols=256 Identities=14% Similarity=0.084 Sum_probs=143.3
Q ss_pred CCeEEEEEEcCCCCeEEEEEeC-CCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceE
Q 001387 690 EGELTIGTIDDIQKLHIRSIPL-GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYG 768 (1088)
Q Consensus 690 ~~~l~i~~l~~~~~~~~~~i~l-~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v 768 (1088)
++.+++-.+.... ..+.+.- ...+..+.+ +.+.++.++.+ +.|++.|..+.+.+..+.- ..+.+
T Consensus 152 dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~--~~~~l~sg~~d----------g~i~vwd~~~~~~~~~~~~-h~~~v 216 (435)
T 1p22_A 152 DNTIKIWDKNTLE--CKRILTGHTGSVLCLQY--DERVIITGSSD----------STVRVWDVNTGEMLNTLIH-HCEAV 216 (435)
T ss_dssp SSCEEEEESSSCC--EEEEECCCSSCEEEEEC--CSSEEEEEETT----------SCEEEEESSSCCEEEEECC-CCSCE
T ss_pred CCeEEEEeCCCCe--EEEEEcCCCCcEEEEEE--CCCEEEEEcCC----------CeEEEEECCCCcEEEEEcC-CCCcE
Confidence 5667776665432 2223322 223445555 34455555432 5799999988888776653 23445
Q ss_pred eEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCe-EEEE-EEEEecCceeEeccccCeEEEEEC-CEEEE
Q 001387 769 CSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGK-LQLI-AEKETKGAVYSLNAFNGKLLAAIN-QKIQL 845 (1088)
Q Consensus 769 ~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~k-l~~~-~~~~~~g~v~ai~~~~g~Lv~~~g-~~l~v 845 (1088)
.++. +. ..+++.|+ ..|.|.+|++...+ +... ......++|++++.-+++|+++.. +.|++
T Consensus 217 ~~l~---~~---~~~l~s~s----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~v 280 (435)
T 1p22_A 217 LHLR---FN---NGMMVTCS----------KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKV 280 (435)
T ss_dssp EEEE---CC---TTEEEEEE----------TTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEE
T ss_pred EEEE---Ec---CCEEEEee----------CCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEE
Confidence 5554 33 34777776 34789999987543 2222 223467899998874445555543 67888
Q ss_pred EEeeeccCcccccccccccccceEEEEEEEeCCEEEEEeccccEEEEEEeccCCe-EEEEeccCCCceeEEEEEeeCceE
Q 001387 846 YKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGA-IEERARDYNANWMSAVEILDDDIY 924 (1088)
Q Consensus 846 ~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~-l~~~~~D~~~~~v~~~~~l~~~~~ 924 (1088)
|++. .+ +.+....... ..+.++...++++++|..-..+.++ +....+ +..+. .+...++++.+ +.+.+
T Consensus 281 wd~~---~~-~~~~~~~~~~--~~v~~~~~~~~~l~~g~~dg~i~iw--d~~~~~~~~~~~--~h~~~v~~~~~-~~~~l 349 (435)
T 1p22_A 281 WNTS---TC-EFVRTLNGHK--RGIACLQYRDRLVVSGSSDNTIRLW--DIECGACLRVLE--GHEELVRCIRF-DNKRI 349 (435)
T ss_dssp EETT---TC-CEEEEEECCS--SCEEEEEEETTEEEEEETTSCEEEE--ETTTCCEEEEEC--CCSSCEEEEEC-CSSEE
T ss_pred EECC---cC-cEEEEEcCCC--CcEEEEEeCCCEEEEEeCCCeEEEE--ECCCCCEEEEEe--CCcCcEEEEEe-cCCEE
Confidence 7752 12 1121111111 2345566678999999988888764 544333 33332 24456777776 66678
Q ss_pred EEEccCCcEEEEeeCCCCCC-cccccceeEEEEEEcCCccceEEeeeeeecCCCCCCCCccEEEEEcccccEEEEEec
Q 001387 925 LGAENNFNLFTVRKNSEGAT-DEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASL 1001 (1088)
Q Consensus 925 l~~D~~gnl~~l~~~~~~~~-~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~~l~~t~~G~i~~l~~l 1001 (1088)
+.+..+|.+.+++....... ...+........-| ...|+++.. ....++.|+.||.|...-.-
T Consensus 350 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~-------------~~~~l~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 350 VSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH-SGRVFRLQF-------------DEFQIVSSSHDDTILIWDFL 413 (435)
T ss_dssp EEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC-SSCCCCEEE-------------CSSCEEECCSSSEEEEEC--
T ss_pred EEEeCCCcEEEEECCCCCCccccccchheeeccCC-CCCeEEEEe-------------CCCEEEEEeCCCEEEEEECC
Confidence 88889999999987532110 00011111111112 234544432 23458888899999866443
No 71
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.065 Score=59.52 Aligned_cols=233 Identities=11% Similarity=0.061 Sum_probs=132.9
Q ss_pred eEEEEe-CCeEEEEEEcCCCCeEEEEEeC-CCccCeEEEecC--CCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEE
Q 001387 684 SLAIAK-EGELTIGTIDDIQKLHIRSIPL-GEHPRRICHQEQ--SRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIST 759 (1088)
Q Consensus 684 ~l~~~~-~~~l~i~~l~~~~~~~~~~i~l-~~tp~~i~y~~~--~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~ 759 (1088)
.++... ++.+++-.+.....-..+.+.- ...+..+.+.+. .+.++.++.+ ..|++.|..+.+....
T Consensus 25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----------g~v~iwd~~~~~~~~~ 94 (379)
T 3jrp_A 25 RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD----------GKVLIWKEENGRWSQI 94 (379)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT----------SCEEEEEEETTEEEEE
T ss_pred EEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC----------CEEEEEEcCCCceeEe
Confidence 344443 6678888876433333344432 345667888765 5665555432 4688888776653333
Q ss_pred EECC-CCceEeEEEEEEEcCCC-ceEEEEEeeeeCCCCCCCcceEEEEEEEeCCe-EEEEEEEEecCceeEecccc----
Q 001387 760 YPLD-TFEYGCSILSCSFSDDS-NVYYCVGTAYVLPEENEPTKGRILVFIVEDGK-LQLIAEKETKGAVYSLNAFN---- 832 (1088)
Q Consensus 760 ~~~~-~~E~v~si~~~~~~~~~-~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~k-l~~~~~~~~~g~v~ai~~~~---- 832 (1088)
..+. ....+.+++ +..+. ..++++|+ ..|.|.+|++...+ ..........++|++++-..
T Consensus 95 ~~~~~~~~~v~~~~---~~~~~~~~~l~~~~----------~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 95 AVHAVHSASVNSVQ---WAPHEYGPLLLVAS----------SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EEECCCSSCEEEEE---ECCGGGCSEEEEEE----------TTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred eeecCCCcceEEEE---eCCCCCCCEEEEec----------CCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 3333 234455543 33321 46788776 35899999998542 23333345678898887553
Q ss_pred ----------CeEE-EEE-CCEEEEEEeeeccCccccccc-ccccccceEEEEEEEe---CCEEEEEeccccEEEEEEec
Q 001387 833 ----------GKLL-AAI-NQKIQLYKWMLRDDGTRELQS-ECGHHGHILALYVQTR---GDFIVVGDLMKSISLLIYKH 896 (1088)
Q Consensus 833 ----------g~Lv-~~~-g~~l~v~~~~~~~~~~~~L~~-~~~~~~~~~~~~l~~~---~~~I~vgD~~~Sv~~~~~~~ 896 (1088)
+.++ ++. ...|++|++... .....+.. ...+...+..+..... ++++++|+.-..+.++..+.
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSD-AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETT-TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCC-CcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 4444 433 367888876411 11111111 1111222223333334 66888999888888876654
Q ss_pred cCC--eEEEEeccCCCceeEEEEEeeCce-EEEEccCCcEEEEeeCC
Q 001387 897 EEG--AIEERARDYNANWMSAVEILDDDI-YLGAENNFNLFTVRKNS 940 (1088)
Q Consensus 897 ~~~--~l~~~~~D~~~~~v~~~~~l~~~~-~l~~D~~gnl~~l~~~~ 940 (1088)
... .............++++.+-.++. ++.+..+|.+.+++.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 241 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 321 333444444566788888866654 66677899999999874
No 72
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.86 Score=57.50 Aligned_cols=109 Identities=13% Similarity=0.060 Sum_probs=70.0
Q ss_pred cEEEEEEC--CCEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCC
Q 001387 490 SVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD 567 (1088)
Q Consensus 490 ~I~~a~~~--~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~ 567 (1088)
.|.+.+.+ +..++.+..++.+.++.....+... ...-...|.++++.+ ..+++.+.. |+++++|++.+
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~--~~~~~~~V~~l~fsp-------g~~L~S~s~-D~~v~lWd~~~ 88 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI--KLEDRSAIKEMRFVK-------GIYLVVINA-KDTVYVLSLYS 88 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE--ECSSCCCEEEEEEET-------TTEEEEEET-TCEEEEEETTT
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE--EcCCCCCEEEEEEcC-------CCEEEEEEC-cCeEEEEECCC
Confidence 46666654 4566777777887776654433221 122346799999875 346777776 99999999986
Q ss_pred CCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEec
Q 001387 568 LNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNM 612 (1088)
Q Consensus 568 l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~ 612 (1088)
.+.+...... ....++.+. .+..+|++|..||.+..|.+..
T Consensus 89 ~~~~~~~~~~--~~V~~v~~s--p~g~~l~sgs~dg~V~lwd~~~ 129 (902)
T 2oaj_A 89 QKVLTTVFVP--GKITSIDTD--ASLDWMLIGLQNGSMIVYDIDR 129 (902)
T ss_dssp CSEEEEEECS--SCEEEEECC--TTCSEEEEEETTSCEEEEETTT
T ss_pred CcEEEEEcCC--CCEEEEEEC--CCCCEEEEEcCCCcEEEEECCC
Confidence 5554332211 223344333 2457899999999999887653
No 73
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.12 Score=59.09 Aligned_cols=222 Identities=16% Similarity=0.155 Sum_probs=123.7
Q ss_pred CCeEEEEEEcC---CCCe-EEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCC---Cc--------
Q 001387 690 EGELTIGTIDD---IQKL-HIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQ---TF-------- 754 (1088)
Q Consensus 690 ~~~l~i~~l~~---~~~~-~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~---t~-------- 754 (1088)
++.+++-.+.. ...+ ......-...+..++++|..+.++.++.+ ..|++.|.. +.
T Consensus 85 dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d----------g~i~vwd~~~~~~~~~~~~~~~ 154 (437)
T 3gre_A 85 QGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKD----------GQIIVLKVNHYQQESEVKFLNC 154 (437)
T ss_dssp TSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETT----------SEEEEEEEEEEEETTEEEEEEE
T ss_pred CceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCC----------CEEEEEEeccccCCceeecccc
Confidence 56677777654 2111 12233445677889999988877776543 356666542 22
Q ss_pred eEEEEEECCC---CceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEE-ecCceeEecc
Q 001387 755 EFISTYPLDT---FEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKE-TKGAVYSLNA 830 (1088)
Q Consensus 755 ~~i~~~~~~~---~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~-~~g~v~ai~~ 830 (1088)
..+..+.+.+ .+.+.++... ......+++.|+ ..|.|.+|++...+........ ..++|++++-
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~ 222 (437)
T 3gre_A 155 ECIRKINLKNFGKNEYAVRMRAF--VNEEKSLLVALT----------NLSRVIIFDIRTLERLQIIENSPRHGAVSSICI 222 (437)
T ss_dssp EEEEEEEGGGGSSCCCEEEEEEE--ECSSCEEEEEEE----------TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEE
T ss_pred ceeEEEEccCcccccCceEEEEE--EcCCCCEEEEEe----------CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEE
Confidence 2344555653 4556655433 223467888886 3589999998765543333322 6789999985
Q ss_pred c-cCe-EEEEEC-CEEEEEEeeeccCcccccccccccccceEEEEEEEe------CCEEEEEeccccEEEEEEeccCCeE
Q 001387 831 F-NGK-LLAAIN-QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTR------GDFIVVGDLMKSISLLIYKHEEGAI 901 (1088)
Q Consensus 831 ~-~g~-Lv~~~g-~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~------~~~I~vgD~~~Sv~~~~~~~~~~~l 901 (1088)
- ++. |+++.. ..|++|++. . .+............+.++... +.+++.|..-..+.+ |+....+.
T Consensus 223 s~~~~~l~s~~~dg~i~iwd~~--~---~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~i--wd~~~~~~ 295 (437)
T 3gre_A 223 DEECCVLILGTTRGIIDIWDIR--F---NVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTI--WNFVKGHC 295 (437)
T ss_dssp CTTSCEEEEEETTSCEEEEETT--T---TEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEE--EETTTTEE
T ss_pred CCCCCEEEEEcCCCeEEEEEcC--C---ccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEE--EEcCCCcE
Confidence 4 344 444433 568887752 1 122221111122233444332 226666766666655 44443332
Q ss_pred EEEec-------------------------cCCCceeEEEEEeeCceEEEEccCCcEEEEeeCC
Q 001387 902 EERAR-------------------------DYNANWMSAVEILDDDIYLGAENNFNLFTVRKNS 940 (1088)
Q Consensus 902 ~~~~~-------------------------D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~~ 940 (1088)
...-. +.+...++++.+-+...++.+..+|.+.+++...
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~ 359 (437)
T 3gre_A 296 QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNE 359 (437)
T ss_dssp EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTC
T ss_pred EEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCC
Confidence 21111 1134456777777444577888899999998753
No 74
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.22 E-value=0.16 Score=57.90 Aligned_cols=222 Identities=11% Similarity=0.123 Sum_probs=126.4
Q ss_pred CCeEEEEEEcCCCCeEEEEEeC-CCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceE
Q 001387 690 EGELTIGTIDDIQKLHIRSIPL-GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYG 768 (1088)
Q Consensus 690 ~~~l~i~~l~~~~~~~~~~i~l-~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v 768 (1088)
++.+.+-.+.... ..++++. +..|..++++|+.+.++++.... ..|+++|..+.+.+..+.. ...+
T Consensus 190 d~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~i~~~d~~~~~~~~~~~~--~~~~ 256 (433)
T 3bws_A 190 ANAVHVFDLKTLA--YKATVDLTGKWSKILLYDPIRDLVYCSNWIS---------EDISVIDRKTKLEIRKTDK--IGLP 256 (433)
T ss_dssp GTEEEEEETTTCC--EEEEEECSSSSEEEEEEETTTTEEEEEETTT---------TEEEEEETTTTEEEEECCC--CSEE
T ss_pred CCEEEEEECCCce--EEEEEcCCCCCeeEEEEcCCCCEEEEEecCC---------CcEEEEECCCCcEEEEecC--CCCc
Confidence 5677776665432 3344543 55788999999988776665432 4799999988887765543 3344
Q ss_pred eEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cC-eEEEEE--CCEEE
Q 001387 769 CSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NG-KLLAAI--NQKIQ 844 (1088)
Q Consensus 769 ~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g-~Lv~~~--g~~l~ 844 (1088)
.++ .+..+ ..++++++.... .-....|.|++|++..+++... ....+.+.+++-- +| +++++. +++++
T Consensus 257 ~~~---~~~~~-g~~l~~~~~~~~--~~~~~dg~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~ 328 (433)
T 3bws_A 257 RGL---LLSKD-GKELYIAQFSAS--NQESGGGRLGIYSMDKEKLIDT--IGPPGNKRHIVSGNTENKIYVSDMCCSKIE 328 (433)
T ss_dssp EEE---EECTT-SSEEEEEEEESC--TTCSCCEEEEEEETTTTEEEEE--EEEEECEEEEEECSSTTEEEEEETTTTEEE
T ss_pred eEE---EEcCC-CCEEEEEECCCC--ccccCCCeEEEEECCCCcEEee--ccCCCCcceEEECCCCCEEEEEecCCCEEE
Confidence 443 34433 346666654211 1112579999999876654332 3445566666543 34 566653 36788
Q ss_pred EEEeeeccCcccccccccccccceEEEEEEEeCCEEEEEeccccE-------------EEEEEeccCCeEEEEeccCCCc
Q 001387 845 LYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSI-------------SLLIYKHEEGAIEERARDYNAN 911 (1088)
Q Consensus 845 v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv-------------~~~~~~~~~~~l~~~~~D~~~~ 911 (1088)
+|+++ .+ ++.........+..+.....++++++++....- .+..|+....+....-.. ..
T Consensus 329 v~d~~---~~--~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~--~~ 401 (433)
T 3bws_A 329 VYDLK---EK--KVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA--GN 401 (433)
T ss_dssp EEETT---TT--EEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC--SS
T ss_pred EEECC---CC--cEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC--CC
Confidence 87752 12 222211111222223333346688888765421 345577665554433322 33
Q ss_pred eeEEEEEeeCce-EEEEc-cCCcEEEEeeC
Q 001387 912 WMSAVEILDDDI-YLGAE-NNFNLFTVRKN 939 (1088)
Q Consensus 912 ~v~~~~~l~~~~-~l~~D-~~gnl~~l~~~ 939 (1088)
.+.++.+-.++. +++++ .+|.+.+++.+
T Consensus 402 ~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 402 QPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp SEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred CCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 566666655554 45565 48999998865
No 75
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.18 E-value=0.13 Score=58.73 Aligned_cols=208 Identities=13% Similarity=0.144 Sum_probs=125.1
Q ss_pred EEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecC
Q 001387 744 HFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKG 823 (1088)
Q Consensus 744 s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g 823 (1088)
+.|++.|..+++.+..+.-. ...+.|+. + ...++++|+ ..|.|.+|++..++..... ....+
T Consensus 153 g~i~iwd~~~~~~~~~~~~h-~~~v~~l~---~---~~~~l~sg~----------~dg~i~vwd~~~~~~~~~~-~~h~~ 214 (435)
T 1p22_A 153 NTIKIWDKNTLECKRILTGH-TGSVLCLQ---Y---DERVIITGS----------SDSTVRVWDVNTGEMLNTL-IHHCE 214 (435)
T ss_dssp SCEEEEESSSCCEEEEECCC-SSCEEEEE---C---CSSEEEEEE----------TTSCEEEEESSSCCEEEEE-CCCCS
T ss_pred CeEEEEeCCCCeEEEEEcCC-CCcEEEEE---E---CCCEEEEEc----------CCCeEEEEECCCCcEEEEE-cCCCC
Confidence 47999999888877665432 33455554 3 256888886 3488999998865542221 24678
Q ss_pred ceeEeccccCeEEEEEC-CEEEEEEeeeccCccccccccccccc-ceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeE
Q 001387 824 AVYSLNAFNGKLLAAIN-QKIQLYKWMLRDDGTRELQSECGHHG-HILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAI 901 (1088)
Q Consensus 824 ~v~ai~~~~g~Lv~~~g-~~l~v~~~~~~~~~~~~L~~~~~~~~-~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l 901 (1088)
+|++++.-++.++++.. +.|++|++.. + ..+........ ...+.++...++++++|..-..+.+ |+....+.
T Consensus 215 ~v~~l~~~~~~l~s~s~dg~i~vwd~~~---~-~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~v--wd~~~~~~ 288 (435)
T 1p22_A 215 AVLHLRFNNGMMVTCSKDRSIAVWDMAS---P-TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKV--WNTSTCEF 288 (435)
T ss_dssp CEEEEECCTTEEEEEETTSCEEEEECSS---S-SCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEE--EETTTCCE
T ss_pred cEEEEEEcCCEEEEeeCCCcEEEEeCCC---C-CCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEE--EECCcCcE
Confidence 89999866666665543 6788887631 1 11110011111 1234566668999999998888766 45444433
Q ss_pred EEEeccCCCceeEEEEEeeCceEEEEccCCcEEEEeeCCCCCCcccccceeEEEEEE-cCCccceEEeeeeeecCCCCCC
Q 001387 902 EERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYH-LGEFVNRFRHGSLVMRLPDSDV 980 (1088)
Q Consensus 902 ~~~~~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~ 980 (1088)
...-. .+...++++.+ +.+.++++..+|.+.+++.... +. ...+. ....|+++..
T Consensus 289 ~~~~~-~~~~~v~~~~~-~~~~l~~g~~dg~i~iwd~~~~--------~~--~~~~~~h~~~v~~~~~------------ 344 (435)
T 1p22_A 289 VRTLN-GHKRGIACLQY-RDRLVVSGSSDNTIRLWDIECG--------AC--LRVLEGHEELVRCIRF------------ 344 (435)
T ss_dssp EEEEE-CCSSCEEEEEE-ETTEEEEEETTSCEEEEETTTC--------CE--EEEECCCSSCEEEEEC------------
T ss_pred EEEEc-CCCCcEEEEEe-CCCEEEEEeCCCeEEEEECCCC--------CE--EEEEeCCcCcEEEEEe------------
Confidence 22221 23455666665 6667888889999999987531 11 12221 1233444321
Q ss_pred CCccEEEEEcccccEEEEEe
Q 001387 981 GQIPTVIFGTVNGVIGVIAS 1000 (1088)
Q Consensus 981 ~~~~~~l~~t~~G~i~~l~~ 1000 (1088)
....++.|+.+|.|...-.
T Consensus 345 -~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 345 -DNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp -CSSEEEEEETTSCEEEEEH
T ss_pred -cCCEEEEEeCCCcEEEEEC
Confidence 3456888899999987653
No 76
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=97.17 E-value=0.086 Score=57.42 Aligned_cols=141 Identities=15% Similarity=0.061 Sum_probs=85.3
Q ss_pred CCeEEEEEEcCCCCeEEEEEeCCC---ccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCC-
Q 001387 690 EGELTIGTIDDIQKLHIRSIPLGE---HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTF- 765 (1088)
Q Consensus 690 ~~~l~i~~l~~~~~~~~~~i~l~~---tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~- 765 (1088)
++.+.+-.+. ..-..++++++. .|+.++++|+.+.++++.... ..|.++|..+.+.+..+.+...
T Consensus 10 ~~~v~~~d~~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~---------~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 10 PDKLVVIDTE--KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKS---------ESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp TTEEEEEETT--TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTT---------TEEEEEETTTCCEEEEEECCBTT
T ss_pred CCeEEEEECC--CCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCC---------CeEEEEECCCCCeEeeEEcCCcc
Confidence 5666665443 334567888888 799999999988776665432 4689999999998888877541
Q ss_pred ---ceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCC--cceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cC-eEEEE
Q 001387 766 ---EYGCSILSCSFSDDSNVYYCVGTAYVLPEENEP--TKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NG-KLLAA 838 (1088)
Q Consensus 766 ---E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~--~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g-~Lv~~ 838 (1088)
+.+.++ .+..+++ +++++......+.+.. ..|+|++|++..++.. ........+.+++-- +| +|+++
T Consensus 79 ~~~~~~~~~---~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~s~dg~~l~~~ 152 (337)
T 1pby_B 79 ERVKSLFGA---ALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLSRR--KAFEAPRQITMLAWARDGSKLYGL 152 (337)
T ss_dssp EEEECTTCE---EECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE--EEEECCSSCCCEEECTTSSCEEEE
T ss_pred cccccccce---EECCCCC-EEEEEecccccccccccccCceEEEEECCCCcEE--EEEeCCCCcceeEECCCCCEEEEe
Confidence 123333 3444333 4555542110011111 3589999988765543 233344556666522 34 46666
Q ss_pred ECCEEEEEEe
Q 001387 839 INQKIQLYKW 848 (1088)
Q Consensus 839 ~g~~l~v~~~ 848 (1088)
++.+++++.
T Consensus 153 -~~~i~~~d~ 161 (337)
T 1pby_B 153 -GRDLHVMDP 161 (337)
T ss_dssp -SSSEEEEET
T ss_pred -CCeEEEEEC
Confidence 778888775
No 77
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.17 Score=58.17 Aligned_cols=153 Identities=14% Similarity=0.139 Sum_probs=86.1
Q ss_pred EEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEe--CC-eEEEEEEEEecCceeEeccc-cCe-EEEEEC-CEEEEE
Q 001387 773 SCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE--DG-KLQLIAEKETKGAVYSLNAF-NGK-LLAAIN-QKIQLY 846 (1088)
Q Consensus 773 ~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~--~~-kl~~~~~~~~~g~v~ai~~~-~g~-Lv~~~g-~~l~v~ 846 (1088)
.+.+..+++.++++|. ..|.|.+|++. .+ .++.+......++|++++-- +|. |+++.. ..++++
T Consensus 107 ~~~~s~d~~~l~~~~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~ 176 (450)
T 2vdu_B 107 NLRLTSDESRLIACAD----------SDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSI 176 (450)
T ss_dssp EEEECTTSSEEEEEEG----------GGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEEcCCCCEEEEEEC----------CCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence 3345544444446664 34899999998 44 45555556778899998755 344 444433 456655
Q ss_pred EeeeccCcccc-cc-cccccccceEEEEEEEe---CCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeC
Q 001387 847 KWMLRDDGTRE-LQ-SECGHHGHILALYVQTR---GDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDD 921 (1088)
Q Consensus 847 ~~~~~~~~~~~-L~-~~~~~~~~~~~~~l~~~---~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~ 921 (1088)
++ .+....+ .. ........+..+..... +++++.|+.-..+.++.++ ..+....-...+..+++++.|-+.
T Consensus 177 ~~--~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~--~~~~~~~~~~~h~~~v~~~~~sd~ 252 (450)
T 2vdu_B 177 DI--NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYP--QCFIVDKWLFGHKHFVSSICCGKD 252 (450)
T ss_dssp ET--TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEES--CTTCEEEECCCCSSCEEEEEECST
T ss_pred ec--CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECC--CCceeeeeecCCCCceEEEEECCC
Confidence 53 2211110 00 11111222333344444 5589999988888776553 333222212234466777777733
Q ss_pred ceEEEEccCCcEEEEeeC
Q 001387 922 DIYLGAENNFNLFTVRKN 939 (1088)
Q Consensus 922 ~~~l~~D~~gnl~~l~~~ 939 (1088)
..++.+..+|.+.++...
T Consensus 253 ~~l~s~~~d~~v~vwd~~ 270 (450)
T 2vdu_B 253 YLLLSAGGDDKIFAWDWK 270 (450)
T ss_dssp TEEEEEESSSEEEEEETT
T ss_pred CEEEEEeCCCeEEEEECC
Confidence 456677789999999865
No 78
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=97.14 E-value=0.21 Score=55.65 Aligned_cols=289 Identities=12% Similarity=0.094 Sum_probs=148.3
Q ss_pred ccCCceeEEEEeCCCCCCCCCccEEEEEEe------cCCEEEEEECCCCC--c------eEEecCCC-CcCceeEEeeee
Q 001387 526 AQLEYEISCLDINPIGENPSYSQIAAVGMW------TDISVRIFSLPDLN--L------ITKEHLGG-EIIPRSVLLCAF 590 (1088)
Q Consensus 526 ~~l~~~is~l~~~~~~~~~~~~~~~~vg~w------~~~~i~i~~l~~l~--~------~~~~~l~~-~~~p~si~~~~~ 590 (1088)
..+...|.|+++.| .+.+++-|-. .++.|++|+++.-. . .....|+. +..+.++...
T Consensus 11 ~~~g~PV~sv~fs~------dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~-- 82 (365)
T 4h5i_A 11 YNVGYPAYGAKFLN------NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS-- 82 (365)
T ss_dssp EECSSCEEEEEEEE------TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--
T ss_pred cCCCCCEEEEEEeC------CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--
Confidence 45667899999864 2456665532 13479999985311 1 11122332 1223333211
Q ss_pred cCceEEEEEe-----------CCCcEEEEEEecCCCccccceeeec---C--ccceeEEEEEeCCceEEEEecCCceEE-
Q 001387 591 EGISYLLCAL-----------GDGHLLNFLLNMKTGELTDRKKVSL---G--TQPITLRTFSSKNTTHVFAASDRPTVI- 653 (1088)
Q Consensus 591 ~~~~~L~vgl-----------~~G~l~~y~~~~~~~~l~~~~~~~l---G--~~pv~l~~~~~~~~~~v~~~~~~p~~i- 653 (1088)
...+++|. .|+.+-.|.+....+.+...+.... + ...++...|.-++...+++.|+..-.+
T Consensus 83 --~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~ 160 (365)
T 4h5i_A 83 --KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMR 160 (365)
T ss_dssp --TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEE
T ss_pred --CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEE
Confidence 23445543 4667778887765544433222211 1 112455555434443445566543222
Q ss_pred Eec--CCcEEEeecccccceeeeccCCCCCCCeEEEEeCCeEEEEEEcCCCCeEEEEEeC--CCccCeEEEecCCCEEEE
Q 001387 654 YSS--NKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPL--GEHPRRICHQEQSRTFAI 729 (1088)
Q Consensus 654 ~~~--~~~~~~~~l~~~~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~~~~~~i~l--~~tp~~i~y~~~~~~~~v 729 (1088)
.++ .++..+..-...++.+++ |+. ....++..+++.+.+-...... ...+.... +..++.++|+|+.+.++.
T Consensus 161 iwd~~~~~~~~~~~~~~~V~~v~-fsp--dg~~l~s~s~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~v~fspdg~~l~~ 236 (365)
T 4h5i_A 161 IIDPSDLTEKFEIETRGEVKDLH-FST--DGKVVAYITGSSLEVISTVTGS-CIARKTDFDKNWSLSKINFIADDTVLIA 236 (365)
T ss_dssp EEETTTTEEEEEEECSSCCCEEE-ECT--TSSEEEEECSSCEEEEETTTCC-EEEEECCCCTTEEEEEEEEEETTEEEEE
T ss_pred EeECCCCcEEEEeCCCCceEEEE-Ecc--CCceEEeccceeEEEEEeccCc-ceeeeecCCCCCCEEEEEEcCCCCEEEE
Confidence 222 233322221223343332 321 1223555667776655544332 22222222 235678999999888877
Q ss_pred EEeecCCCcCcceeEEEEEEeCCCce--EEEEEECCCC-ceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEE
Q 001387 730 CSLKNQSCAEESEMHFVRLLDDQTFE--FISTYPLDTF-EYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVF 806 (1088)
Q Consensus 730 ~~~~~~~~~~~~~~s~l~lid~~t~~--~i~~~~~~~~-E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~ 806 (1088)
++.+. .....++..+...+. ......+..+ ..++|++ +.. ...+||.|+. .|.|.+|
T Consensus 237 ~s~d~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~---~Sp-dg~~lasgs~----------D~~V~iw 296 (365)
T 4h5i_A 237 ASLKK------GKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMD---VDM-KGELAVLASN----------DNSIALV 296 (365)
T ss_dssp EEESS------SCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEE---ECT-TSCEEEEEET----------TSCEEEE
T ss_pred EecCC------cceeEEeecccccceecceeeeeecCCCCCeEeEE---ECC-CCCceEEEcC----------CCEEEEE
Confidence 76543 123456666654443 2233344333 3355543 443 3578888872 3789999
Q ss_pred EEeCCeEEEEEEEEecCceeEeccc-cCeEEEE--ECCEEEEEEe
Q 001387 807 IVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAA--INQKIQLYKW 848 (1088)
Q Consensus 807 ~i~~~kl~~~~~~~~~g~v~ai~~~-~g~Lv~~--~g~~l~v~~~ 848 (1088)
++..++........+.++|++++-- +|+++++ ..++|+|+++
T Consensus 297 d~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 297 KLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp ETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred ECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 9876654322223468899999854 5655543 3488999886
No 79
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.13 E-value=0.088 Score=58.35 Aligned_cols=227 Identities=13% Similarity=0.117 Sum_probs=134.4
Q ss_pred eEEEE-eCCeEEEEEEcCCCCeEEEEEe-CCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEE
Q 001387 684 SLAIA-KEGELTIGTIDDIQKLHIRSIP-LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYP 761 (1088)
Q Consensus 684 ~l~~~-~~~~l~i~~l~~~~~~~~~~i~-l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~ 761 (1088)
.++.. .++.+++..++....-..+.+. -...+..+.++|+.+.++.++.+ +.+++.|..+.+....+.
T Consensus 22 ~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d----------g~i~vwd~~~~~~~~~~~ 91 (372)
T 1k8k_C 22 QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD----------RNAYVWTLKGRTWKPTLV 91 (372)
T ss_dssp EEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT----------SCEEEEEEETTEEEEEEE
T ss_pred EEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCC----------CeEEEEECCCCeeeeeEE
Confidence 34444 4777888887764312344444 34567889999988887776533 468888887777666666
Q ss_pred CCCC-ceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCe-EEEEEE--EEecCceeEeccc-cCe-E
Q 001387 762 LDTF-EYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGK-LQLIAE--KETKGAVYSLNAF-NGK-L 835 (1088)
Q Consensus 762 ~~~~-E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~k-l~~~~~--~~~~g~v~ai~~~-~g~-L 835 (1088)
+... ..+.+++ +.. ...++++|+ ..|.+.+|++...+ ...... ....++|++++-. ++. |
T Consensus 92 ~~~~~~~v~~~~---~~~-~~~~l~~~~----------~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 157 (372)
T 1k8k_C 92 ILRINRAARCVR---WAP-NEKKFAVGS----------GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 157 (372)
T ss_dssp CCCCSSCEEEEE---ECT-TSSEEEEEE----------TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEE
T ss_pred eecCCCceeEEE---ECC-CCCEEEEEe----------CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEE
Confidence 5443 4455543 333 356788886 24789999998543 222222 3357889988855 344 4
Q ss_pred EEEE-CCEEEEEEeeeccC--------------cccccccccccccceEEEEEEE--eCCEEEEEeccccEEEEEEeccC
Q 001387 836 LAAI-NQKIQLYKWMLRDD--------------GTRELQSECGHHGHILALYVQT--RGDFIVVGDLMKSISLLIYKHEE 898 (1088)
Q Consensus 836 v~~~-g~~l~v~~~~~~~~--------------~~~~L~~~~~~~~~~~~~~l~~--~~~~I~vgD~~~Sv~~~~~~~~~ 898 (1088)
+++. ...+++|++..... ..+.+........ .+.++.. .++++++|.....+.++ +...
T Consensus 158 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~i~--d~~~ 233 (372)
T 1k8k_C 158 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG--WVHGVCFSANGSRVAWVSHDSTVCLA--DADK 233 (372)
T ss_dssp EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS--CEEEEEECSSSSEEEEEETTTEEEEE--EGGG
T ss_pred EEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCC--eEEEEEECCCCCEEEEEeCCCEEEEE--ECCC
Confidence 4443 46888887531100 0011111111111 2344444 56799999887777664 5433
Q ss_pred C-eEEEEeccCCCceeEEEEEeeCceEEEEccCCcEEEEeeCC
Q 001387 899 G-AIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNS 940 (1088)
Q Consensus 899 ~-~l~~~~~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~~ 940 (1088)
. .+..+. .....++++.+-.++.++++-.+|.+.++....
T Consensus 234 ~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 234 KMAVATLA--SETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp TTEEEEEE--CSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred CceeEEEc--cCCCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence 3 333333 234467778887777766555899999998865
No 80
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=97.09 E-value=0.36 Score=54.64 Aligned_cols=273 Identities=9% Similarity=0.052 Sum_probs=140.4
Q ss_pred CceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEE
Q 001387 529 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNF 608 (1088)
Q Consensus 529 ~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y 608 (1088)
...|+|+++.| ...+++.|.. |++|.+|++.+.+......- ......++.+.. +..+|+.|..||.+..|
T Consensus 108 ~~~V~~~~~~p------~~~~l~s~s~-Dg~i~vwd~~~~~~~~~l~~-h~~~V~~v~~~~--~~~~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 108 RSPVTRVIFHP------VFSVMVSASE-DATIKVWDYETGDFERTLKG-HTDSVQDISFDH--SGKLLASCSADMTIKLW 177 (410)
T ss_dssp SSCEEEEEECS------SSSEEEEEES-SSCEEEEETTTCCCCEEECC-CSSCEEEEEECT--TSSEEEEEETTSCCCEE
T ss_pred CCcEEEEEEcC------CCCEEEEEeC-CCeEEEEECCCCcEEEEEec-cCCcEEEEEEcC--CCCEEEEEeCCCeEEEE
Confidence 35688999875 2467888877 99999999976544322111 112334554432 44688899999999988
Q ss_pred EEecCCCccccceeeecCccceeEEEEEeCCceEEEEecCCceEEEec--CCc-EEEeecccccceeeeccCCCCCCCeE
Q 001387 609 LLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSS--NKK-LLYSNVNLKEVSHMCPFNSAAFPDSL 685 (1088)
Q Consensus 609 ~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~i~~~--~~~-~~~~~l~~~~i~~~~~f~~~~~~~~l 685 (1088)
.+... .. .+...--..+|.-..+. .+...++..|....+..++ .+. +....-+...+..+. ++. .+..+
T Consensus 178 d~~~~--~~--~~~~~~h~~~V~~v~~~-p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~-~~~--~g~~l 249 (410)
T 1vyh_C 178 DFQGF--EC--IRTMHGHDHNVSSVSIM-PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR-PNQ--DGTLI 249 (410)
T ss_dssp ETTSS--CE--EECCCCCSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE-ECT--TSSEE
T ss_pred eCCCC--ce--eEEEcCCCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEE-ECC--CCCEE
Confidence 76432 11 11111112233222232 1223344444333333332 122 111111112233322 211 11233
Q ss_pred EEEe-CCeEEEEEEcCCCCeEEEEEeC-CCccCeEEEecCCC-------------------EEEEEEeecCCCcCcceeE
Q 001387 686 AIAK-EGELTIGTIDDIQKLHIRSIPL-GEHPRRICHQEQSR-------------------TFAICSLKNQSCAEESEMH 744 (1088)
Q Consensus 686 ~~~~-~~~l~i~~l~~~~~~~~~~i~l-~~tp~~i~y~~~~~-------------------~~~v~~~~~~~~~~~~~~s 744 (1088)
+... ++.+++-.+.... ....+.- ...+..+.++|... .+++.++.. +
T Consensus 250 ~s~s~D~~v~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D---------~ 318 (410)
T 1vyh_C 250 ASCSNDQTVRVWVVATKE--CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD---------K 318 (410)
T ss_dssp EEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT---------S
T ss_pred EEEcCCCeEEEEECCCCc--eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCC---------C
Confidence 3333 6777777665432 1222221 23455667776421 233333322 5
Q ss_pred EEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeE-EEEEEEEecC
Q 001387 745 FVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKL-QLIAEKETKG 823 (1088)
Q Consensus 745 ~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl-~~~~~~~~~g 823 (1088)
.|++.|..+.+.+..+.-. ...+.++ .+.. ...+++.|. ..|.|.+|++..++. ..+ ..+.+
T Consensus 319 ~i~iwd~~~~~~~~~~~~h-~~~v~~v---~~~~-~g~~l~s~s----------~D~~i~vwd~~~~~~~~~~--~~h~~ 381 (410)
T 1vyh_C 319 TIKMWDVSTGMCLMTLVGH-DNWVRGV---LFHS-GGKFILSCA----------DDKTLRVWDYKNKRCMKTL--NAHEH 381 (410)
T ss_dssp EEEEEETTTTEEEEEEECC-SSCEEEE---EECS-SSSCEEEEE----------TTTEEEEECCTTSCCCEEE--ECCSS
T ss_pred eEEEEECCCCceEEEEECC-CCcEEEE---EEcC-CCCEEEEEe----------CCCeEEEEECCCCceEEEE--cCCCC
Confidence 7999999888877666432 2334454 3443 345666665 347999998875442 222 24678
Q ss_pred ceeEecccc-C-eEEEEE-CCEEEEEE
Q 001387 824 AVYSLNAFN-G-KLLAAI-NQKIQLYK 847 (1088)
Q Consensus 824 ~v~ai~~~~-g-~Lv~~~-g~~l~v~~ 847 (1088)
+|++++--. + +|+.+. .++|++|+
T Consensus 382 ~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 382 FVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp CEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 899888553 3 455433 36777754
No 81
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=97.04 E-value=0.26 Score=55.19 Aligned_cols=116 Identities=10% Similarity=0.092 Sum_probs=72.4
Q ss_pred CcEEEEEECC---CEEEEEECCCeEEEEEEcCcE----EEE--Eee------ccCCceeEEEEeCCCCCCCCCccEEEEE
Q 001387 489 YSVNVATANA---SQVLLATGGGHLVYLEIGDGI----LTE--VKH------AQLEYEISCLDINPIGENPSYSQIAAVG 553 (1088)
Q Consensus 489 ~~I~~a~~~~---~~lvv~~~~~~l~~~~~~~~~----l~~--~~~------~~l~~~is~l~~~~~~~~~~~~~~~~vg 553 (1088)
..|.+.+.++ ..++.+..++.+.+++++.++ +.. ... ......|.++++.+- ...+++.+
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~s~ 118 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH-----DTGMFTSS 118 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT-----CTTCEEEE
T ss_pred CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC-----CCcEEEEE
Confidence 4577777643 566666667888777776421 111 100 014567899998652 24577777
Q ss_pred EecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeec-CceEEEEEeCCCcEEEEEEec
Q 001387 554 MWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFE-GISYLLCALGDGHLLNFLLNM 612 (1088)
Q Consensus 554 ~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~-~~~~L~vgl~~G~l~~y~~~~ 612 (1088)
.. ++.+.+|++.+.+.+...... ....++.+.... +..++++|..+|.+..|.+..
T Consensus 119 ~~-d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 175 (408)
T 4a11_B 119 SF-DKTLKVWDTNTLQTADVFNFE--ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175 (408)
T ss_dssp ET-TSEEEEEETTTTEEEEEEECS--SCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred eC-CCeEEEeeCCCCccceeccCC--CceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence 77 999999999876554433332 233344444332 345789999999999988753
No 82
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=97.04 E-value=0.11 Score=59.62 Aligned_cols=294 Identities=12% Similarity=0.085 Sum_probs=147.2
Q ss_pred CCcEEEEEEC---CCEEEEEECCCeEEEEEEcCcEEEE-EeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEE
Q 001387 488 GYSVNVATAN---ASQVLLATGGGHLVYLEIGDGILTE-VKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 563 (1088)
Q Consensus 488 ~~~I~~a~~~---~~~lvv~~~~~~l~~~~~~~~~l~~-~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~ 563 (1088)
+..|++.+.+ +..++....++.+.+..++.++... .....-...|+|+++.|.. ..+++.|.+ |++|++|
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~-----~~~l~s~s~-D~~v~iw 192 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLN-----TNQFYASSM-EGTTRLQ 192 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSC-----TTEEEEECS-SSCEEEE
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCC-----CCEEEEEeC-CCEEEEe
Confidence 3467777765 3456666667887776665432111 2112235679999997522 467777777 9999999
Q ss_pred ECCCCCceEEecC-CCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceE
Q 001387 564 SLPDLNLITKEHL-GGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTH 642 (1088)
Q Consensus 564 ~l~~l~~~~~~~l-~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~ 642 (1088)
++..-........ .......++.+. .+..+|+.|..||.+..|.+... .+. ....-..+|.=..|. .....
T Consensus 193 d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~g~~dg~i~~wd~~~~--~~~---~~~~h~~~v~~v~~~-p~~~~ 264 (435)
T 4e54_B 193 DFKGNILRVFASSDTINIWFCSLDVS--ASSRMVVTGDNVGNVILLNMDGK--ELW---NLRMHKKKVTHVALN-PCCDW 264 (435)
T ss_dssp ETTSCEEEEEECCSSCSCCCCCEEEE--TTTTEEEEECSSSBEEEEESSSC--BCC---CSBCCSSCEEEEEEC-TTCSS
T ss_pred eccCCceeEEeccCCCCccEEEEEEC--CCCCEEEEEeCCCcEeeeccCcc--eeE---EEecccceEEeeeec-CCCce
Confidence 9865322111111 111122344333 24568899999999998875421 111 111112344222231 12233
Q ss_pred EEEec--CCceEEEec-CCc----EEEeecccccceeeeccCCCCCCCeEEEEe-CCeEEEEEEcCCCCeEEEE-----E
Q 001387 643 VFAAS--DRPTVIYSS-NKK----LLYSNVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRS-----I 709 (1088)
Q Consensus 643 v~~~~--~~p~~i~~~-~~~----~~~~~l~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~-----i 709 (1088)
++++| +....++.- ..+ +....-+...+.++ .|+. ....|+... ++.+++-.+.......... .
T Consensus 265 ~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~-~~sp--dg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~ 341 (435)
T 4e54_B 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAA-CFSP--DGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRH 341 (435)
T ss_dssp EEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEEC-CBCT--TSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCC
T ss_pred EEEEecCcceeeEEecccccccceEEEeeeccccccce-eECC--CCCeeEEEcCCCEEEEEECCCCccceEEecccccc
Confidence 44433 222222211 111 10001111222221 2221 112344433 6788888877643222111 1
Q ss_pred eCCCccCeEEEecCCCEEEEEEeecCC--CcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEE
Q 001387 710 PLGEHPRRICHQEQSRTFAICSLKNQS--CAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVG 787 (1088)
Q Consensus 710 ~l~~tp~~i~y~~~~~~~~v~~~~~~~--~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VG 787 (1088)
.-..++.+..+++..+.++++...... --.......|+++|..+++.+..+.-.....+.++..+ .. ...+|+-|
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~f--sp-dg~~lasg 418 (435)
T 4e54_B 342 FQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEF--NP-MGDTLASA 418 (435)
T ss_dssp CSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEE--CT-TSSCEEEE
T ss_pred cccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEE--CC-CCCEEEEE
Confidence 112345667888888888777654310 00001224689999989888876654445556665433 33 23566644
Q ss_pred eeeeCCCCCCCcceEEEEEEEeCCe
Q 001387 788 TAYVLPEENEPTKGRILVFIVEDGK 812 (1088)
Q Consensus 788 T~~~~~~e~~~~~Gri~v~~i~~~k 812 (1088)
. .|.|++|++.++|
T Consensus 419 ~-----------d~~i~iW~~~~gk 432 (435)
T 4e54_B 419 M-----------GYHILIWSQQEAR 432 (435)
T ss_dssp C-----------SSEEEECCCC---
T ss_pred c-----------CCcEEEEECCcCe
Confidence 2 2578888876544
No 83
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=96.99 E-value=0.31 Score=52.85 Aligned_cols=78 Identities=10% Similarity=-0.029 Sum_probs=51.6
Q ss_pred CceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCce--EEecC-CCCcCceeEEeeeecCceEEEEEeCCCcE
Q 001387 529 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLI--TKEHL-GGEIIPRSVLLCAFEGISYLLCALGDGHL 605 (1088)
Q Consensus 529 ~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~--~~~~l-~~~~~p~si~~~~~~~~~~L~vgl~~G~l 605 (1088)
...|+|+++.+ ...+++.|.. ||.+++|++...... ....+ .....+.++.+....+..+|+.|..||.+
T Consensus 11 ~~~v~~~~~~~------~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 11 DDLVHDVVYDF------YGRHVATCSS-DQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp SSCEEEEEECS------SSSEEEEEET-TSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ccceeEEEEcC------CCCEEEEeeC-CCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 46799999975 2568888877 999999999753211 11111 11223445554432235789999999999
Q ss_pred EEEEEecC
Q 001387 606 LNFLLNMK 613 (1088)
Q Consensus 606 ~~y~~~~~ 613 (1088)
..|.+...
T Consensus 84 ~vwd~~~~ 91 (351)
T 3f3f_A 84 KLWEEDPD 91 (351)
T ss_dssp EEEEECTT
T ss_pred EEEecCCC
Confidence 99998764
No 84
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=96.98 E-value=0.13 Score=56.97 Aligned_cols=219 Identities=11% Similarity=0.041 Sum_probs=128.4
Q ss_pred eCCeEEEEEEcCCCCeEEEEEeC---CCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCC
Q 001387 689 KEGELTIGTIDDIQKLHIRSIPL---GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTF 765 (1088)
Q Consensus 689 ~~~~l~i~~l~~~~~~~~~~i~l---~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~ 765 (1088)
.++.+++-.+...+.....+..+ ....+.++++|+.+.++.++.+ ..|++.|..+.+.+..+.-- .
T Consensus 101 ~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d----------~~i~iwd~~~~~~~~~~~~h-~ 169 (344)
T 4gqb_B 101 DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD----------ICIKVWDLAQQVVLSSYRAH-A 169 (344)
T ss_dssp TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT----------SCEEEEETTTTEEEEEECCC-S
T ss_pred CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC----------CeEEEEECCCCcEEEEEcCc-C
Confidence 36677777777665444444333 2457789999998877766543 46999999998887765422 2
Q ss_pred ceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCe-EEEEEEEEecCceeEeccc--cCeEEEE-E-C
Q 001387 766 EYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGK-LQLIAEKETKGAVYSLNAF--NGKLLAA-I-N 840 (1088)
Q Consensus 766 E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~k-l~~~~~~~~~g~v~ai~~~--~g~Lv~~-~-g 840 (1088)
..+.++ .+..++..+++.|. .-|.|.+|++..++ +..+........+++++-. +++++++ . .
T Consensus 170 ~~V~~~---~~~~~~~~~l~s~s----------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d 236 (344)
T 4gqb_B 170 AQVTCV---AASPHKDSVFLSCS----------EDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN 236 (344)
T ss_dssp SCEEEE---EECSSCTTEEEEEE----------TTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT
T ss_pred CceEEE---EecCCCCCceeeec----------cccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccC
Confidence 334444 34444556666554 23789999887544 3333333445567777654 4555543 3 4
Q ss_pred CEEEEEEeeeccCcccccccccccccceEEEEEEE--eC-CEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEE
Q 001387 841 QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQT--RG-DFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVE 917 (1088)
Q Consensus 841 ~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~--~~-~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~ 917 (1088)
..|++|++. .+ +.+.....+.. .+.++.. .+ ++|+.|..-..|.+ |+...+++..+ ..+...|+++.
T Consensus 237 g~v~~wd~~---~~-~~~~~~~~h~~--~v~~v~fsp~g~~~lasgs~D~~i~v--wd~~~~~~~~~--~~H~~~V~~v~ 306 (344)
T 4gqb_B 237 GTVSLVDTK---ST-SCVLSSAVHSQ--CVTGLVFSPHSVPFLASLSEDCSLAV--LDSSLSELFRS--QAHRDFVRDAT 306 (344)
T ss_dssp SEEEEEESC---C---CCEEEECCSS--CEEEEEECSSSSCCEEEEETTSCEEE--ECTTCCEEEEE--CCCSSCEEEEE
T ss_pred CcEEEEECC---CC-cEEEEEcCCCC--CEEEEEEccCCCeEEEEEeCCCeEEE--EECCCCcEEEE--cCCCCCEEEEE
Confidence 678887753 12 21211111222 2344444 34 35667777777766 56666665543 34556788888
Q ss_pred EeeCc-eEE-EEccCCcEEEEeeCCC
Q 001387 918 ILDDD-IYL-GAENNFNLFTVRKNSE 941 (1088)
Q Consensus 918 ~l~~~-~~l-~~D~~gnl~~l~~~~~ 941 (1088)
|-.++ .++ .+-.+|.+.+...+.+
T Consensus 307 ~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 307 WSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp ECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred EeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 75443 444 5667999999887653
No 85
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=96.98 E-value=0.56 Score=50.46 Aligned_cols=277 Identities=9% Similarity=0.051 Sum_probs=137.3
Q ss_pred CcEEEEEEC--CCEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECC
Q 001387 489 YSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLP 566 (1088)
Q Consensus 489 ~~I~~a~~~--~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~ 566 (1088)
..|.+.+.+ +..++.+..++.+.+.....+++...- ......|.++++.+ ...+++.|.. |+.+.+|++.
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~------~~~~l~s~~~-d~~i~vwd~~ 95 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSS------DSNLLVSASD-DKTLKIWDVS 95 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECT------TSSEEEEEET-TSEEEEEETT
T ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhh-ccCCCceEEEEEcC------CCCEEEEECC-CCEEEEEECC
Confidence 357777655 446666666777777666555443321 12345688999865 2578888877 9999999998
Q ss_pred CCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEe
Q 001387 567 DLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAA 646 (1088)
Q Consensus 567 ~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~ 646 (1088)
+.+.+....-. .....++.+.+ +..+|+.|..||.+..|.+... .. .+.......|+.-..+. .+...++..
T Consensus 96 ~~~~~~~~~~~-~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~--~~--~~~~~~~~~~v~~~~~~-~~~~~l~~~ 167 (312)
T 4ery_A 96 SGKCLKTLKGH-SNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTG--KC--LKTLPAHSDPVSAVHFN-RDGSLIVSS 167 (312)
T ss_dssp TCCEEEEEECC-SSCEEEEEECS--SSSEEEEEETTSCEEEEETTTC--CE--EEEECCCSSCEEEEEEC-TTSSEEEEE
T ss_pred CCcEEEEEcCC-CCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCC--EE--EEEecCCCCcEEEEEEc-CCCCEEEEE
Confidence 75554321111 11223333332 4467889999999998876432 11 11122223344333332 122333333
Q ss_pred cCCc-eEEEecC-CcEE--EeecccccceeeeccCCCCCCCeEEEEe-CCeEEEEEEcCCCCeEEEEEeCCC---ccCeE
Q 001387 647 SDRP-TVIYSSN-KKLL--YSNVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPLGE---HPRRI 718 (1088)
Q Consensus 647 ~~~p-~~i~~~~-~~~~--~~~l~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l~~---tp~~i 718 (1088)
+..- ..++.-. ++.. +..-....+. ...|+. ..+.++..+ ++.+++-.+.... ..+.+.-.. .....
T Consensus 168 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~ 242 (312)
T 4ery_A 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVS-FVKFSP--NGKYILAATLDNTLKLWDYSKGK--CLKTYTGHKNEKYCIFA 242 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEECCSSCCCEE-EEEECT--TSSEEEEEETTTEEEEEETTTTE--EEEEECSSCCSSSCCCE
T ss_pred eCCCcEEEEECCCCceeeEEeccCCCceE-EEEECC--CCCEEEEEcCCCeEEEEECCCCc--EEEEEEecCCceEEEEE
Confidence 3322 2233222 2211 1110111121 122221 122344444 6778887766432 233332211 11222
Q ss_pred EEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCC
Q 001387 719 CHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEP 798 (1088)
Q Consensus 719 ~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~ 798 (1088)
.+.+....+++.++.. ..|++.|..+.+.+..+.-. .+.+.++. +.. ..++++.|+. .
T Consensus 243 ~~~~~~~~~l~sg~~d---------g~i~vwd~~~~~~~~~~~~h-~~~v~~~~---~~p-~~~~l~s~~~--------~ 300 (312)
T 4ery_A 243 NFSVTGGKWIVSGSED---------NLVYIWNLQTKEIVQKLQGH-TDVVISTA---CHP-TENIIASAAL--------E 300 (312)
T ss_dssp EEECSSSCEEEECCTT---------SCEEEEETTTCCEEEEECCC-SSCEEEEE---ECS-SSSEEEEEEC--------T
T ss_pred EEEeCCCcEEEEECCC---------CEEEEEECCCchhhhhhhcc-CCcEEEEe---ecC-cCCceEEEEc--------c
Confidence 3333333344433322 56999999888877655422 23344443 332 3566776652 1
Q ss_pred cceEEEEEEE
Q 001387 799 TKGRILVFIV 808 (1088)
Q Consensus 799 ~~Gri~v~~i 808 (1088)
..|.|.+|+.
T Consensus 301 ~d~~i~~W~~ 310 (312)
T 4ery_A 301 NDKTIKLWKS 310 (312)
T ss_dssp TTCCEEEEEC
T ss_pred CCccEEEecC
Confidence 3467777764
No 86
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.023 Score=64.52 Aligned_cols=270 Identities=11% Similarity=0.116 Sum_probs=137.3
Q ss_pred CCCeEEEEEEcCcEE-EEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCC----CCceEEecCCCCc
Q 001387 506 GGGHLVYLEIGDGIL-TEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD----LNLITKEHLGGEI 580 (1088)
Q Consensus 506 ~~~~l~~~~~~~~~l-~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~----l~~~~~~~l~~~~ 580 (1088)
.++.+..+++..++. ...........|.|+++.+ ...+++.|.. ++.+++|++.. .+.+... .....
T Consensus 43 ~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~-~~h~~ 114 (416)
T 2pm9_A 43 TDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSH------NNKIIAGALD-NGSLELYSTNEANNAINSMARF-SNHSS 114 (416)
T ss_dssp CCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECS------SSSCEEEEES-SSCEEEECCSSTTSCCCEEEEC-CCSSS
T ss_pred CCCeEEEEEccCCCCCcEEEEEecCCceEEEEECC------CCCeEEEEcc-CCeEEEeecccccccccchhhc-cCCcc
Confidence 355666666654321 1122233456799999965 2567888877 99999999975 2222211 11122
Q ss_pred CceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeec-----CccceeEEEEEeCCceEEEEecCCceE-EE
Q 001387 581 IPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSL-----GTQPITLRTFSSKNTTHVFAASDRPTV-IY 654 (1088)
Q Consensus 581 ~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~l-----G~~pv~l~~~~~~~~~~v~~~~~~p~~-i~ 654 (1088)
...++.+.+- +..+|+.|..||.+..|.+..............+ ...++.-..+..++...++..+..-.+ ++
T Consensus 115 ~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw 193 (416)
T 2pm9_A 115 SVKTVKFNAK-QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIW 193 (416)
T ss_dssp CCCEEEECSS-STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEE
T ss_pred ceEEEEEcCC-CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEE
Confidence 3455554432 2467889999999998877543211100000111 112332222321212233333333323 22
Q ss_pred ecC-CcEE-Eeecc------cccceeeeccCCCCCCCeEEEEeC-C---eEEEEEEcCCCCeEEEEEe--CCCccCeEEE
Q 001387 655 SSN-KKLL-YSNVN------LKEVSHMCPFNSAAFPDSLAIAKE-G---ELTIGTIDDIQKLHIRSIP--LGEHPRRICH 720 (1088)
Q Consensus 655 ~~~-~~~~-~~~l~------~~~i~~~~~f~~~~~~~~l~~~~~-~---~l~i~~l~~~~~~~~~~i~--l~~tp~~i~y 720 (1088)
.-+ ++.. ..... ...+.++ .|+.. -+..++.... + .+++..+..... ..+.+. -...+..+++
T Consensus 194 d~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~-~~~~l~~~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~~ 270 (416)
T 2pm9_A 194 DLKAKKEVIHLSYTSPNSGIKQQLSVV-EWHPK-NSTRVATATGSDNDPSILIWDLRNANT-PLQTLNQGHQKGILSLDW 270 (416)
T ss_dssp ETTTTEEEEEECCCCCSSCCCCCEEEE-EECSS-CTTEEEEEECCSSSCCCCEEETTSTTS-CSBCCCSCCSSCEEEEEE
T ss_pred ECCCCCcceEEeccccccccCCceEEE-EECCC-CCCEEEEEECCCCCceEEEEeCCCCCC-CcEEeecCccCceeEEEe
Confidence 222 2221 11111 1122221 12211 1123444443 3 788877765321 222222 2356778899
Q ss_pred ec-CCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCc
Q 001387 721 QE-QSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPT 799 (1088)
Q Consensus 721 ~~-~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~ 799 (1088)
+| ..+.++.++.+ ..|++.|..+++.+..+.-.. ..+.+++ +..++..+++.|. .
T Consensus 271 s~~~~~~l~s~~~d----------g~v~~wd~~~~~~~~~~~~~~-~~v~~~~---~s~~~~~~l~s~~----------~ 326 (416)
T 2pm9_A 271 CHQDEHLLLSSGRD----------NTVLLWNPESAEQLSQFPARG-NWCFKTK---FAPEAPDLFACAS----------F 326 (416)
T ss_dssp CSSCSSCEEEEESS----------SEEEEECSSSCCEEEEEECSS-SCCCCEE---ECTTCTTEEEECC----------S
T ss_pred CCCCCCeEEEEeCC----------CCEEEeeCCCCccceeecCCC-CceEEEE---ECCCCCCEEEEEe----------c
Confidence 98 66666655433 579999998888887766433 3344443 4444446777775 3
Q ss_pred ceEEEEEEEeCC
Q 001387 800 KGRILVFIVEDG 811 (1088)
Q Consensus 800 ~Gri~v~~i~~~ 811 (1088)
.|+|.+|++.+.
T Consensus 327 d~~i~iw~~~~~ 338 (416)
T 2pm9_A 327 DNKIEVQTLQNL 338 (416)
T ss_dssp SSEEEEEESCCC
T ss_pred CCcEEEEEccCC
Confidence 488999988743
No 87
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=96.90 E-value=0.67 Score=52.50 Aligned_cols=268 Identities=10% Similarity=0.062 Sum_probs=142.6
Q ss_pred CCEEEEEECCCeEEEEEEcCcEEEEEeec-cCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecC
Q 001387 498 ASQVLLATGGGHLVYLEIGDGILTEVKHA-QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHL 576 (1088)
Q Consensus 498 ~~~lvv~~~~~~l~~~~~~~~~l~~~~~~-~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l 576 (1088)
++.|.+++ ++.+.+-....|+....-.. .-...|+|+++.+ .+.++++|.. |+.|.||++.+.+.+....-
T Consensus 116 ~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fsp------dg~~lasgs~-Dg~v~iWd~~~~~~~~~~~~ 187 (420)
T 4gga_A 116 GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK------EGNYLAVGTS-SAEVQLWDVQQQKRLRNMTS 187 (420)
T ss_dssp TSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT------TSSEEEEEET-TSCEEEEETTTTEEEEEECC
T ss_pred CCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECC------CCCEEEEEEC-CCeEEEEEcCCCcEEEEEeC
Confidence 45666666 56666666666655443222 2345699999975 3678999988 99999999987665433211
Q ss_pred CCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEec-CCceEEEe
Q 001387 577 GGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAAS-DRPTVIYS 655 (1088)
Q Consensus 577 ~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~-~~p~~i~~ 655 (1088)
......++ . . +...|..|..||.+..+........+ ....--..++....+. .....+...+ +....+..
T Consensus 188 -h~~~v~~~--s-~-~~~~l~sgs~d~~i~~~d~~~~~~~~---~~~~~h~~~~~~~~~~-~~g~~l~s~~~D~~v~i~~ 258 (420)
T 4gga_A 188 -HSARVGSL--S-W-NSYILSSGSRSGHIHHHDVRVAEHHV---ATLSGHSQEVCGLRWA-PDGRHLASGGNDNLVNVWP 258 (420)
T ss_dssp -CSSCEEEE--E-E-ETTEEEEEETTSEEEEEETTSSSCEE---EEEECCSSCEEEEEEC-TTSSEEEEEETTSCEEEEE
T ss_pred -CCCceEEE--e-e-CCCEEEEEeCCCceeEeeecccceee---EEecccccceeeeeec-CCCCeeeeeeccccceEEe
Confidence 11122222 1 2 23578889999998877644321111 1111111222222221 1122232222 33333322
Q ss_pred c-CCc-----EEEeecccccceeeeccCCCCCCCeEEEEe---CCeEEEEEEcCCCCeEEEEEeCCCccCeEEEecCCCE
Q 001387 656 S-NKK-----LLYSNVNLKEVSHMCPFNSAAFPDSLAIAK---EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRT 726 (1088)
Q Consensus 656 ~-~~~-----~~~~~l~~~~i~~~~~f~~~~~~~~l~~~~---~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~ 726 (1088)
. .++ +....-....+.+++ |+. .-++.++... ++.+++-.+.. .-....+.....+..+++.+..+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~V~~~~-~~p-~~~~~la~~~gs~D~~I~iwd~~t--~~~~~~~~~~~~v~~~~~~~~~~~ 334 (420)
T 4gga_A 259 SAPGEGGWVPLQTFTQHQGAVKAVA-WCP-WQSNVLATGGGTSDRHIRIWNVCS--GACLSAVDAHSQVCSILWSPHYKE 334 (420)
T ss_dssp SSCCSSCSCCSEEECCCSSCEEEEE-ECT-TCTTEEEEEECTTTCEEEEEETTT--TEEEEEEECSSCEEEEEEETTTTE
T ss_pred eccccccceeeeeecccCCceeeee-eCC-CcccEEEEEeecCCCEEEEEeCCc--cccceeeccccceeeeeecCCCCe
Confidence 1 111 111111112222211 111 1112333332 46777766654 345667777788888999999998
Q ss_pred EEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEE
Q 001387 727 FAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVF 806 (1088)
Q Consensus 727 ~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~ 806 (1088)
+++++... ...|++.|..+++.+..+.- ....|++++ +..+ ..+|+.|. .-|.|.+|
T Consensus 335 lv~~sg~~--------d~~I~iwd~~~~~~v~~l~g-H~~~V~~l~---~spd-g~~l~S~s----------~D~tvriW 391 (420)
T 4gga_A 335 LISGHGFA--------QNQLVIWKYPTMAKVAELKG-HTSRVLSLT---MSPD-GATVASAA----------ADETLRLW 391 (420)
T ss_dssp EEEEECTT--------TCCEEEEETTTCCEEEEECC-CSSCEEEEE---ECTT-SSCEEEEE----------TTTEEEEE
T ss_pred EEEEEecC--------CCEEEEEECCCCcEEEEEcC-CCCCEEEEE---EcCC-CCEEEEEe----------cCCeEEEE
Confidence 88776321 15699999999988876542 123455554 4433 45666554 23789999
Q ss_pred EEe
Q 001387 807 IVE 809 (1088)
Q Consensus 807 ~i~ 809 (1088)
++.
T Consensus 392 dv~ 394 (420)
T 4gga_A 392 RCF 394 (420)
T ss_dssp CCS
T ss_pred ECC
Confidence 875
No 88
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=96.90 E-value=0.79 Score=50.95 Aligned_cols=291 Identities=13% Similarity=0.064 Sum_probs=149.5
Q ss_pred CcEEEEEECC---CEEEEEECCCeEEEEEEcCcEEEE-EeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEE
Q 001387 489 YSVNVATANA---SQVLLATGGGHLVYLEIGDGILTE-VKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFS 564 (1088)
Q Consensus 489 ~~I~~a~~~~---~~lvv~~~~~~l~~~~~~~~~l~~-~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~ 564 (1088)
..|.+.+.++ ..++.+..++.+...++..++... .........|.|+++.+. ...+++.|.. |+.+.+|+
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~~l~s~~~-d~~i~iwd 147 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF-----NTNQLFVSSI-RGATTLRD 147 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT-----EEEEEEEEET-TTEEEEEE
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC-----CCCEEEEEeC-CCEEEEEE
Confidence 3577766552 456666667788777776543322 221235678999998641 2467777777 99999999
Q ss_pred CCCCCceEEecC-CCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEE
Q 001387 565 LPDLNLITKEHL-GGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHV 643 (1088)
Q Consensus 565 l~~l~~~~~~~l-~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v 643 (1088)
+.+-........ .....+.++.+.. +..+|+.|..||.+..|.+. +.. .....--..++.-..+...+...+
T Consensus 148 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~---~~~--~~~~~~h~~~v~~~~~~~~~~~~l 220 (383)
T 3ei3_B 148 FSGSVIQVFAKTDSWDYWYCCVDVSV--SRQMLATGDSTGRLLLLGLD---GHE--IFKEKLHKAKVTHAEFNPRCDWLM 220 (383)
T ss_dssp TTSCEEEEEECCCCSSCCEEEEEEET--TTTEEEEEETTSEEEEEETT---SCE--EEEEECSSSCEEEEEECSSCTTEE
T ss_pred CCCCceEEEeccCCCCCCeEEEEECC--CCCEEEEECCCCCEEEEECC---CCE--EEEeccCCCcEEEEEECCCCCCEE
Confidence 985222111111 1112344554442 45689999999999998862 111 111111123333222321121123
Q ss_pred EEecCCceE-EEecC-----CcEEEeecccccceeeeccCCCCCCCeEEEEe-CCeEEEEEEcCCCCeEEEE-----EeC
Q 001387 644 FAASDRPTV-IYSSN-----KKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRS-----IPL 711 (1088)
Q Consensus 644 ~~~~~~p~~-i~~~~-----~~~~~~~l~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~-----i~l 711 (1088)
+..+..-.+ ++.-+ +.+....-....+.+++ |+. ..+..++... ++.+++-.+........-. ..-
T Consensus 221 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~s~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 298 (383)
T 3ei3_B 221 ATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAY-FNP-TDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQ 298 (383)
T ss_dssp EEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEE-ECT-TTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCT
T ss_pred EEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEE-EcC-CCCCEEEEEcCCCcEEEEECCCCccccccccccccccc
Confidence 333332222 22211 22211111112232222 211 0123344443 6888888887654321111 111
Q ss_pred CCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeee
Q 001387 712 GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYV 791 (1088)
Q Consensus 712 ~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~ 791 (1088)
...+-+..++|.....+++.+..... -......|+++|..+.+.+..+.-...+.+.++.. +.. ...+|+.|.
T Consensus 299 ~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~--~s~-~g~~l~s~s--- 371 (383)
T 3ei3_B 299 HLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNK--FSP-TGDVLASGM--- 371 (383)
T ss_dssp TSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEE--ECT-TSSEEEEEE---
T ss_pred cccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEE--Eec-CccEEEEec---
Confidence 13444567888888777665432111 11134679999999998888776554444444323 333 345777663
Q ss_pred CCCCCCCcceEEEEEEEe
Q 001387 792 LPEENEPTKGRILVFIVE 809 (1088)
Q Consensus 792 ~~~e~~~~~Gri~v~~i~ 809 (1088)
.|.|.+|++.
T Consensus 372 --------d~~i~iw~~~ 381 (383)
T 3ei3_B 372 --------GFNILIWNRE 381 (383)
T ss_dssp --------TTEEEEEECC
T ss_pred --------CCcEEEEecC
Confidence 1689999864
No 89
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=96.89 E-value=0.26 Score=53.42 Aligned_cols=201 Identities=10% Similarity=0.102 Sum_probs=114.3
Q ss_pred CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCc----eEEEEEECCCCceEeEEEEEEEcCC-CceEEEEE
Q 001387 713 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTF----EFISTYPLDTFEYGCSILSCSFSDD-SNVYYCVG 787 (1088)
Q Consensus 713 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~----~~i~~~~~~~~E~v~si~~~~~~~~-~~~~i~VG 787 (1088)
..++.+.++|+.+.++.++.+ +.|++.|..+. +.+..+. .....+.+++. ... ...+++.|
T Consensus 12 ~~v~~~~~~~~~~~l~~~~~d----------g~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~---~~~~d~~~l~s~ 77 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVATCSSD----------QHIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDW---ASPEYGRIIASA 77 (351)
T ss_dssp SCEEEEEECSSSSEEEEEETT----------SEEEEEEECSSSCCEEEEEEEE-CCSSCEEEEEE---CCGGGCSEEEEE
T ss_pred cceeEEEEcCCCCEEEEeeCC----------CeEEEEECCCCCCcceecceec-cCCCcEEEEEE---cCCCCCCEEEEE
Confidence 356788899988877766543 47888886544 3333333 22344555543 321 25678877
Q ss_pred eeeeCCCCCCCcceEEEEEEEeCC-------eEEEEEEE-EecCceeEecccc---Ce-EEEEE-CCEEEEEEeeeccCc
Q 001387 788 TAYVLPEENEPTKGRILVFIVEDG-------KLQLIAEK-ETKGAVYSLNAFN---GK-LLAAI-NQKIQLYKWMLRDDG 854 (1088)
Q Consensus 788 T~~~~~~e~~~~~Gri~v~~i~~~-------kl~~~~~~-~~~g~v~ai~~~~---g~-Lv~~~-g~~l~v~~~~~~~~~ 854 (1088)
+ ..|.|.+|++..+ +.+.+... ...++|++++-.. +. |+++. +..|++|++.....
T Consensus 78 ~----------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~- 146 (351)
T 3f3f_A 78 S----------YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSD- 146 (351)
T ss_dssp E----------TTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTC-
T ss_pred c----------CCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHH-
Confidence 6 3478999999843 22444433 4688999988653 54 44433 36788877631110
Q ss_pred cccccc------cccc--ccceEEEEEEE--e---CCEEEEEeccccEEEEEEeccCCeEEEEe-ccCCCceeEEEEEee
Q 001387 855 TRELQS------ECGH--HGHILALYVQT--R---GDFIVVGDLMKSISLLIYKHEEGAIEERA-RDYNANWMSAVEILD 920 (1088)
Q Consensus 855 ~~~L~~------~~~~--~~~~~~~~l~~--~---~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~-~D~~~~~v~~~~~l~ 920 (1088)
...+.. .... .....+.++.. . ++++++|.....+ ++ +.....++..+. -..+...++++.+-.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~h~~~i~~~~~~p 224 (351)
T 3f3f_A 147 LRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAI-IY-QRGKDGKLHVAAKLPGHKSLIRSISWAP 224 (351)
T ss_dssp TTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEE-EE-EECTTSCEEEEEECCCCCSCEEEEEECC
T ss_pred hccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcE-EE-EccCCCceeeeeecCCCCcceeEEEECC
Confidence 000100 0000 00111223332 2 6788888888776 33 333344443222 233556788888877
Q ss_pred Cc-----eEEEEccCCcEEEEeeCC
Q 001387 921 DD-----IYLGAENNFNLFTVRKNS 940 (1088)
Q Consensus 921 ~~-----~~l~~D~~gnl~~l~~~~ 940 (1088)
++ .++.+..+|.+.+++...
T Consensus 225 ~~~~~~~~l~s~~~dg~i~iwd~~~ 249 (351)
T 3f3f_A 225 SIGRWYQLIATGCKDGRIRIFKITE 249 (351)
T ss_dssp CSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred CCCCcceEEEEEcCCCeEEEEeCCC
Confidence 64 467888999999998764
No 90
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=96.89 E-value=0.052 Score=60.71 Aligned_cols=200 Identities=16% Similarity=0.144 Sum_probs=119.0
Q ss_pred cCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCC
Q 001387 715 PRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPE 794 (1088)
Q Consensus 715 p~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~ 794 (1088)
++.++++|+.+.+++++... -..|++.|..+++.+..++- ...+.+++ |..+ ..+++.|+.
T Consensus 136 ~~~v~fSpDg~~la~as~~~--------d~~i~iwd~~~~~~~~~~~~--~~~V~~v~---fspd-g~~l~s~s~----- 196 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASSKV--------PAIMRIIDPSDLTEKFEIET--RGEVKDLH---FSTD-GKVVAYITG----- 196 (365)
T ss_dssp EEEEEECTTSSCEEEEESCS--------SCEEEEEETTTTEEEEEEEC--SSCCCEEE---ECTT-SSEEEEECS-----
T ss_pred EEEEEEcCCCCEEEEEECCC--------CCEEEEeECCCCcEEEEeCC--CCceEEEE---EccC-CceEEeccc-----
Confidence 56689999999998887643 26899999999998877653 23355553 4443 457776652
Q ss_pred CCCCcceEEEEEEEeCCeE-EEEEEEEecCceeEeccc-cCe-EEEEE-C--CEEEEEEeeeccCcccccccc---cccc
Q 001387 795 ENEPTKGRILVFIVEDGKL-QLIAEKETKGAVYSLNAF-NGK-LLAAI-N--QKIQLYKWMLRDDGTRELQSE---CGHH 865 (1088)
Q Consensus 795 e~~~~~Gri~v~~i~~~kl-~~~~~~~~~g~v~ai~~~-~g~-Lv~~~-g--~~l~v~~~~~~~~~~~~L~~~---~~~~ 865 (1088)
+.+.++....++. .........+.|.+++-. +|. ++++. . ..+.++.|+... ........ ....
T Consensus 197 ------~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~ 269 (365)
T 4h5i_A 197 ------SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKS-GNTSVLRSKQVTNRF 269 (365)
T ss_dssp ------SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEET-TEEEEEEEEEEESSC
T ss_pred ------eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccc-ceecceeeeeecCCC
Confidence 2344554443332 222223345567777644 444 44333 2 234555564332 11111111 1111
Q ss_pred cceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCce-EEEEccCCcEEEEeeCCCC
Q 001387 866 GHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDI-YLGAENNFNLFTVRKNSEG 942 (1088)
Q Consensus 866 ~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~-~l~~D~~gnl~~l~~~~~~ 942 (1088)
..+..+..+..+.+|++|..-.+|.+ |+.+..+....-...+..+|+++.|-.++. ++.+-.++.+.+++.++..
T Consensus 270 ~~V~~~~~Spdg~~lasgs~D~~V~i--wd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 270 KGITSMDVDMKGELAVLASNDNSIAL--VKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp SCEEEEEECTTSCEEEEEETTSCEEE--EETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred CCeEeEEECCCCCceEEEcCCCEEEE--EECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 12233333445779999999888877 566555554433455677899999987765 4567789999999987543
No 91
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.86 E-value=0.77 Score=50.24 Aligned_cols=262 Identities=10% Similarity=0.064 Sum_probs=133.2
Q ss_pred cEEEEEEC--CCEEEEEECCCeEEEEEEcCcE-EEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECC
Q 001387 490 SVNVATAN--ASQVLLATGGGHLVYLEIGDGI-LTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLP 566 (1088)
Q Consensus 490 ~I~~a~~~--~~~lvv~~~~~~l~~~~~~~~~-l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~ 566 (1088)
.|.+.+.+ +..++.+..++.+...+...++ +.... .-...|.++++.| ...+++.|.. |+.+.+|++.
T Consensus 57 ~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~--~~~~~v~~~~~s~------~~~~l~s~~~-d~~v~iw~~~ 127 (340)
T 1got_B 57 KIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP--LRSSWVMTCAYAP------SGNYVACGGL-DNICSIYNLK 127 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE--CSSSCEEEEEECT------TSSEEEEEET-TCEEEEEETT
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEee--cCCccEEEEEECC------CCCEEEEEeC-CCeEEEEECc
Confidence 56666654 3466666667887777765533 22221 2245688888865 2578888888 9999999986
Q ss_pred CCCc--eEEecCC-CCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEE
Q 001387 567 DLNL--ITKEHLG-GEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHV 643 (1088)
Q Consensus 567 ~l~~--~~~~~l~-~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v 643 (1088)
..+. .....+. ......++.+. ....++.|..||.+..|.+.. +... ....--..++.-..+. .+...+
T Consensus 128 ~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~l~s~s~d~~i~~wd~~~--~~~~--~~~~~h~~~v~~~~~~-~~~~~l 199 (340)
T 1got_B 128 TREGNVRVSRELAGHTGYLSCCRFL---DDNQIVTSSGDTTCALWDIET--GQQT--TTFTGHTGDVMSLSLA-PDTRLF 199 (340)
T ss_dssp TCSBSCEEEEEEECCSSCEEEEEEE---ETTEEEEEETTSCEEEEETTT--TEEE--EEECCCSSCEEEEEEC-TTSSEE
T ss_pred cCCCcceeEEEecCCCccEEEEEEC---CCCcEEEEECCCcEEEEECCC--CcEE--EEEcCCCCceEEEEEC-CCCCEE
Confidence 5321 1111111 11122233322 233588899999999887543 2111 1111112233222221 122222
Q ss_pred EEec-CCceEEEec-CCcEE-EeecccccceeeeccCCCCCCCeEEEEe-CCeEEEEEEcCCCCeEEEEEeCC---CccC
Q 001387 644 FAAS-DRPTVIYSS-NKKLL-YSNVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPLG---EHPR 716 (1088)
Q Consensus 644 ~~~~-~~p~~i~~~-~~~~~-~~~l~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l~---~tp~ 716 (1088)
+..+ +....++.- .+... ...-+...+.+++ |+. ..+.++... ++.+++-.+..... ...+... ....
T Consensus 200 ~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~-~~p--~~~~l~s~s~d~~v~iwd~~~~~~--~~~~~~~~~~~~v~ 274 (340)
T 1got_B 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAIC-FFP--NGNAFATGSDDATCRLFDLRADQE--LMTYSHDNIICGIT 274 (340)
T ss_dssp EEEETTSCEEEEETTTCSEEEEECCCSSCEEEEE-ECT--TSSEEEEEETTSCEEEEETTTTEE--EEEECCTTCCSCEE
T ss_pred EEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEE-EcC--CCCEEEEEcCCCcEEEEECCCCcE--EEEEccCCcccceE
Confidence 2222 232222221 22211 1111122333322 221 122344443 67788887765432 2333322 2467
Q ss_pred eEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEe
Q 001387 717 RICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGT 788 (1088)
Q Consensus 717 ~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT 788 (1088)
.+.++|..+.++.++.+ +.+++.|..+.+.+..+.-- ...+.|+. +.. ...+++.|.
T Consensus 275 ~~~~s~~g~~l~~g~~d----------~~i~vwd~~~~~~~~~~~~h-~~~v~~~~---~s~-dg~~l~s~s 331 (340)
T 1got_B 275 SVSFSKSGRLLLAGYDD----------FNCNVWDALKADRAGVLAGH-DNRVSCLG---VTD-DGMAVATGS 331 (340)
T ss_dssp EEEECTTSSEEEEEETT----------SEEEEEETTTCCEEEEEECC-SSCEEEEE---ECT-TSSCEEEEE
T ss_pred EEEECCCCCEEEEECCC----------CeEEEEEcccCcEeeEeecC-CCcEEEEE---EcC-CCCEEEEEc
Confidence 78999998887777643 57999998888777655422 23445543 443 345666665
No 92
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.85 E-value=0.76 Score=50.13 Aligned_cols=215 Identities=13% Similarity=0.037 Sum_probs=118.5
Q ss_pred EEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCce-----Ee
Q 001387 695 IGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEY-----GC 769 (1088)
Q Consensus 695 i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~-----v~ 769 (1088)
+..++....-..+.++.+..|..++++|+.+.++++.... ..|.++|..+.+.+..+....... ..
T Consensus 71 v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~---------~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 141 (353)
T 3vgz_A 71 VYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVN---------SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPL 141 (353)
T ss_dssp EEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTT---------TEEEEEETTTCCEEEEEESCCCCCCSSCCCC
T ss_pred EEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCC---------CEEEEEeCCCCeeEEEEecCCCccccccCCC
Confidence 3344444444677888888899999999998766665432 479999999999998888765332 11
Q ss_pred EEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEE-ecCceeEeccc--cCeEEEEEC-CEEEE
Q 001387 770 SILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKE-TKGAVYSLNAF--NGKLLAAIN-QKIQL 845 (1088)
Q Consensus 770 si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~-~~g~v~ai~~~--~g~Lv~~~g-~~l~v 845 (1088)
....+.+..+++ +++++... ..|+|++|+...++... ... ....+.+++-- +++|+++.. +.+++
T Consensus 142 ~~~~~~~s~dg~-~l~~~~~~--------~~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~ 210 (353)
T 3vgz_A 142 QPRELVADDATN-TVYISGIG--------KESVIWVVDGGNIKLKT--AIQNTGKMSTGLALDSEGKRLYTTNADGELIT 210 (353)
T ss_dssp EEEEEEEETTTT-EEEEEEES--------SSCEEEEEETTTTEEEE--EECCCCTTCCCCEEETTTTEEEEECTTSEEEE
T ss_pred CCceEEECCCCC-EEEEEecC--------CCceEEEEcCCCCceEE--EecCCCCccceEEECCCCCEEEEEcCCCeEEE
Confidence 122233444444 45554421 25789999877655432 223 22235554432 345665544 56776
Q ss_pred EEeeeccCccccccccccc-----ccceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEee
Q 001387 846 YKWMLRDDGTRELQSECGH-----HGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILD 920 (1088)
Q Consensus 846 ~~~~~~~~~~~~L~~~~~~-----~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~ 920 (1088)
++.. .+ ++...... ......+.++..++++++++...+- +..|+....++...-.-..+. ++.+-.
T Consensus 211 ~d~~---~~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-v~~~d~~~~~~~~~~~~~~~~---~~~~s~ 281 (353)
T 3vgz_A 211 IDTA---DN--KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAE-VLVVDTRNGNILAKVAAPESL---AVLFNP 281 (353)
T ss_dssp EETT---TT--EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSE-EEEEETTTCCEEEEEECSSCC---CEEEET
T ss_pred EECC---CC--eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCE-EEEEECCCCcEEEEEEcCCCc---eEEECC
Confidence 5532 22 12111111 1112223444457889999876443 345676655543322222232 344444
Q ss_pred Cc-eEEEEc-cCCcEEEEee
Q 001387 921 DD-IYLGAE-NNFNLFTVRK 938 (1088)
Q Consensus 921 ~~-~~l~~D-~~gnl~~l~~ 938 (1088)
++ .+++++ .++.+.++..
T Consensus 282 dg~~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 282 ARNEAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp TTTEEEEEETTTTEEEEEET
T ss_pred CCCEEEEEECCCCeEEEEEC
Confidence 44 355555 5788888764
No 93
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=96.85 E-value=0.26 Score=55.13 Aligned_cols=221 Identities=11% Similarity=0.085 Sum_probs=95.7
Q ss_pred EEEE-eCCeEEEEEEcCCCCeEEEEEe-CCCccCeEEEecCCCE-EEEEEeecCCCcCcceeEEEEEEeCCCce-EEEEE
Q 001387 685 LAIA-KEGELTIGTIDDIQKLHIRSIP-LGEHPRRICHQEQSRT-FAICSLKNQSCAEESEMHFVRLLDDQTFE-FISTY 760 (1088)
Q Consensus 685 l~~~-~~~~l~i~~l~~~~~~~~~~i~-l~~tp~~i~y~~~~~~-~~v~~~~~~~~~~~~~~s~l~lid~~t~~-~i~~~ 760 (1088)
++.. .++.+.+..+..... .+.+. -...+..++++|..+. ++.++.+ +.|+++|..+.+ .+..+
T Consensus 159 ~~~~~~~~~v~~~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~ll~~~~~d----------g~i~i~d~~~~~~~~~~~ 226 (408)
T 4a11_B 159 VAVGTRGPKVQLCDLKSGSC--SHILQGHRQEILAVSWSPRYDYILATASAD----------SRVKLWDVRRASGCLITL 226 (408)
T ss_dssp EEEEESSSSEEEEESSSSCC--CEEECCCCSCEEEEEECSSCTTEEEEEETT----------SCEEEEETTCSSCCSEEC
T ss_pred EEEEcCCCeEEEEeCCCcce--eeeecCCCCcEEEEEECCCCCcEEEEEcCC----------CcEEEEECCCCCcccccc
Confidence 4443 377888888875432 23333 2356778999998884 4444432 468888875543 22222
Q ss_pred EC--------------CCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEE-----EEe
Q 001387 761 PL--------------DTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAE-----KET 821 (1088)
Q Consensus 761 ~~--------------~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~-----~~~ 821 (1088)
+- .....+.++ .+.. ...++++|+ ..|.+.+|++..++...... ...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~-~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 292 (408)
T 4a11_B 227 DQHNGKKSQAVESANTAHNGKVNGL---CFTS-DGLHLLTVG----------TDNRMRLWNSSNGENTLVNYGKVCNNSK 292 (408)
T ss_dssp CTTTTCSCCCTTTSSCSCSSCEEEE---EECT-TSSEEEEEE----------TTSCEEEEETTTCCBCCCCCCCCCCCCS
T ss_pred cccccccceeeccccccccCceeEE---EEcC-CCCEEEEec----------CCCeEEEEECCCCccceecccccccccc
Confidence 11 112234443 3443 356777776 34789999987543221111 111
Q ss_pred cCceeEec-cc-cCeEEEEECCEEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEEEEeccccEEEEEEeccCC
Q 001387 822 KGAVYSLN-AF-NGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEG 899 (1088)
Q Consensus 822 ~g~v~ai~-~~-~g~Lv~~~g~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~ 899 (1088)
.+...... .. ...++++.++.+++|++. .+ +.+.....+...+..+.....+++++.|+.-..+.++..+ ..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~---~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~--~~ 366 (408)
T 4a11_B 293 KGLKFTVSCGCSSEFVFVPYGSTIAVYTVY---SG-EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPS--LY 366 (408)
T ss_dssp SCCCCEECCSSSSCEEEEEETTEEEEEETT---TC-CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEEC--C-
T ss_pred ccceeEEecCCCceEEEEecCCEEEEEECc---CC-cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCC--CC
Confidence 11111111 11 234667788999998863 12 2222112222233334444456789999988888776544 32
Q ss_pred eEEEEeccCCCceeEEEEEeeCceEEEEccCCcEEEEeeC
Q 001387 900 AIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKN 939 (1088)
Q Consensus 900 ~l~~~~~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~ 939 (1088)
+...- ..............+..+..++.++.+.++..+
T Consensus 367 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 367 EPVPD--DDETTTKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ----------------------------------------
T ss_pred CccCC--CCceEeccccccccceeecccCccCceeecCCc
Confidence 22221 111111122222233344555666777666543
No 94
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=96.84 E-value=0.022 Score=63.51 Aligned_cols=195 Identities=10% Similarity=0.063 Sum_probs=114.3
Q ss_pred CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeC
Q 001387 713 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVL 792 (1088)
Q Consensus 713 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~ 792 (1088)
..++.++++|+.+.++.++.+ ..|++.|..+.+.+..++-.. ..+.++ .+..++..+++.|.
T Consensus 140 ~~V~~v~~spdg~~l~sgs~d----------g~v~iwd~~~~~~~~~~~~h~-~~v~~v---~~s~~~~~~~~s~~---- 201 (357)
T 4g56_B 140 DIVKTLSVFSDGTQAVSGGKD----------FSVKVWDLSQKAVLKSYNAHS-SEVNCV---AACPGKDTIFLSCG---- 201 (357)
T ss_dssp SCEEEEEECSSSSEEEEEETT----------SCEEEEETTTTEEEEEECCCS-SCEEEE---EECTTCSSCEEEEE----
T ss_pred CCEEEEEECCCCCEEEEEeCC----------CeEEEEECCCCcEEEEEcCCC-CCEEEE---EEccCCCceeeeec----
Confidence 456778999988877766543 469999999998887765433 234444 34444455666554
Q ss_pred CCCCCCcceEEEEEEEeCCeE-EEEEEEEecCceeEeccc--cCeEEEEE--CCEEEEEEeeeccCcccccccccccccc
Q 001387 793 PEENEPTKGRILVFIVEDGKL-QLIAEKETKGAVYSLNAF--NGKLLAAI--NQKIQLYKWMLRDDGTRELQSECGHHGH 867 (1088)
Q Consensus 793 ~~e~~~~~Gri~v~~i~~~kl-~~~~~~~~~g~v~ai~~~--~g~Lv~~~--g~~l~v~~~~~~~~~~~~L~~~~~~~~~ 867 (1088)
..|.|.+|++...+. ..+......+++++++-. +++++++. ...|++|++. .+ +.+........
T Consensus 202 ------~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~---~~-~~~~~~~~~~~- 270 (357)
T 4g56_B 202 ------EDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK---NP-DSAQTSAVHSQ- 270 (357)
T ss_dssp ------TTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS---CG-GGCEEECCCSS-
T ss_pred ------cCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECC---CC-cEeEEEeccce-
Confidence 247888888764432 222223346678887744 45555433 3678887753 12 11211111222
Q ss_pred eEEEEEEE--eC-CEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEe--eCceEEEEccCCcEEEEeeCCC
Q 001387 868 ILALYVQT--RG-DFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEIL--DDDIYLGAENNFNLFTVRKNSE 941 (1088)
Q Consensus 868 ~~~~~l~~--~~-~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l--~~~~~l~~D~~gnl~~l~~~~~ 941 (1088)
.+.++.. .+ ++|+.|..-..|.+ |+.+..++...- .+...|+++.|- +...++.+..+|.+.++..+.+
T Consensus 271 -~v~~l~~sp~~~~~lasgs~D~~i~i--wd~~~~~~~~~~--~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 271 -NITGLAYSYHSSPFLASISEDCTVAV--LDADFSEVFRDL--SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp -CEEEEEECSSSSCCEEEEETTSCEEE--ECTTSCEEEEEC--CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred -eEEEEEEcCCCCCEEEEEeCCCEEEE--EECCCCcEeEEC--CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 2334443 34 35666766666665 566555544332 355678888874 3345667788999999998654
No 95
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.11 Score=64.45 Aligned_cols=198 Identities=14% Similarity=0.168 Sum_probs=118.9
Q ss_pred ccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCC--CceEEEEEECCCC-ceEeEEEEEEEcCC-CceEEEEEee
Q 001387 714 HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQ--TFEFISTYPLDTF-EYGCSILSCSFSDD-SNVYYCVGTA 789 (1088)
Q Consensus 714 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~--t~~~i~~~~~~~~-E~v~si~~~~~~~~-~~~~i~VGT~ 789 (1088)
.++.++++|+.+.++.++.+ +.|++.|.. +++.+.. +..+ ..+.+++ +..+ ...+++.|+
T Consensus 11 ~V~~l~~s~dg~~latg~~d----------g~I~vwd~~~~~~~~~~~--l~~h~~~V~~l~---~s~~~~~~~l~s~s- 74 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSD----------KTIKIFEVEGETHKLIDT--LTGHEGPVWRVD---WAHPKFGTILASCS- 74 (753)
T ss_dssp CEEEECCCSSSCCEEEEETT----------TEEEEEEEETTEEEEEEE--ECCCSSCEEEEE---ECCTTSCSEEEEEE-
T ss_pred eeEEEEECCCCCeEEEEECC----------CcEEEEecCCCCCcccee--ccCCcCceEEEE---ecCCCCCCEEEEEe-
Confidence 45677888888877666533 468888765 4444433 3333 3344443 3322 256788776
Q ss_pred eeCCCCCCCcceEEEEEEEeCCeEEEEEEE-EecCceeEecccc---Ce-EEEEEC-CEEEEEEeeeccCcccccccccc
Q 001387 790 YVLPEENEPTKGRILVFIVEDGKLQLIAEK-ETKGAVYSLNAFN---GK-LLAAIN-QKIQLYKWMLRDDGTRELQSECG 863 (1088)
Q Consensus 790 ~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~-~~~g~v~ai~~~~---g~-Lv~~~g-~~l~v~~~~~~~~~~~~L~~~~~ 863 (1088)
..|.|++|++..++.+.+... ...++|++++--. +. ++++.. +.|++|++.. ...........
T Consensus 75 ---------~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~--~~~~~~~~~~~ 143 (753)
T 3jro_A 75 ---------YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE--NGTTSPIIIDA 143 (753)
T ss_dssp ---------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCS--SSCCCCEEEEC
T ss_pred ---------CCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeec--CCCcceeEeec
Confidence 348999999998876555544 4688999988552 44 444433 6788888631 11111111111
Q ss_pred cccceEEEEEEE---------------eCCEEEEEeccccEEEEEEeccCCeEEEEe-ccCCCceeEEEEEeeC---c-e
Q 001387 864 HHGHILALYVQT---------------RGDFIVVGDLMKSISLLIYKHEEGAIEERA-RDYNANWMSAVEILDD---D-I 923 (1088)
Q Consensus 864 ~~~~~~~~~l~~---------------~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~-~D~~~~~v~~~~~l~~---~-~ 923 (1088)
... .+.++.. .++++++|.....+.++..+.......... -..+...++++.+-.+ + .
T Consensus 144 ~~~--~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~ 221 (753)
T 3jro_A 144 HAI--GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY 221 (753)
T ss_dssp CSS--CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEE
T ss_pred CCC--ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCE
Confidence 111 2333333 257889999888888876665433322222 1234567888887765 4 4
Q ss_pred EEEEccCCcEEEEeeCC
Q 001387 924 YLGAENNFNLFTVRKNS 940 (1088)
Q Consensus 924 ~l~~D~~gnl~~l~~~~ 940 (1088)
++.++.+|.+.++....
T Consensus 222 l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 222 LASVSQDRTCIIWTQDN 238 (753)
T ss_dssp EEEEESSSCEEEEEESS
T ss_pred EEEEecCCEEEEecCCC
Confidence 67788999999998865
No 96
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=96.73 E-value=0.49 Score=53.18 Aligned_cols=200 Identities=14% Similarity=0.205 Sum_probs=113.8
Q ss_pred CCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCc--------------eEeEEEEEEE
Q 001387 711 LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFE--------------YGCSILSCSF 776 (1088)
Q Consensus 711 l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E--------------~v~si~~~~~ 776 (1088)
-...+..+.|+|+.+.++.++. ..+++++..+++.+..+.-.... .-..+..+.+
T Consensus 63 h~~~V~~v~fspdg~~la~g~~-----------~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 131 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGCN-----------KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF 131 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEECB-----------SCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEcC-----------CcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEE
Confidence 3456788999999988776542 24677777777666544321110 0001333445
Q ss_pred cCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cC-eEEEEEC-CEEEEEEeeeccC
Q 001387 777 SDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NG-KLLAAIN-QKIQLYKWMLRDD 853 (1088)
Q Consensus 777 ~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g-~Lv~~~g-~~l~v~~~~~~~~ 853 (1088)
.. ...+++.|. ..|.|.+|++..++..... ..+.++|++++-. ++ +|+.+.. .++++|++. .
T Consensus 132 s~-dg~~l~s~~----------~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~---~ 196 (393)
T 1erj_A 132 SP-DGKFLATGA----------EDRLIRIWDIENRKIVMIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR---T 196 (393)
T ss_dssp CT-TSSEEEEEE----------TTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT---T
T ss_pred CC-CCCEEEEEc----------CCCeEEEEECCCCcEEEEE-ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECC---C
Confidence 44 345777775 3478999998766543322 3467889998855 33 4554443 678887652 2
Q ss_pred cccccccccccccceEEEEEEE-eCCEEEEEeccccEEEEEEeccCCeEE-EEec-----cCCCceeEEEEEeeCc-eEE
Q 001387 854 GTRELQSECGHHGHILALYVQT-RGDFIVVGDLMKSISLLIYKHEEGAIE-ERAR-----DYNANWMSAVEILDDD-IYL 925 (1088)
Q Consensus 854 ~~~~L~~~~~~~~~~~~~~l~~-~~~~I~vgD~~~Sv~~~~~~~~~~~l~-~~~~-----D~~~~~v~~~~~l~~~-~~l 925 (1088)
++ .............+.... .++++++|..-..+.+ |+....++. .+.. ..+...++++.|-.++ .++
T Consensus 197 ~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~i--wd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~ 272 (393)
T 1erj_A 197 GQ--CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV--WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 272 (393)
T ss_dssp TE--EEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEE--EETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE
T ss_pred Ce--eEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEE--EECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEE
Confidence 21 111111111222233332 4568888988888766 455444332 2211 2244578888887665 467
Q ss_pred EEccCCcEEEEeeCC
Q 001387 926 GAENNFNLFTVRKNS 940 (1088)
Q Consensus 926 ~~D~~gnl~~l~~~~ 940 (1088)
.+..+|.+.+++...
T Consensus 273 s~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 273 SGSLDRSVKLWNLQN 287 (393)
T ss_dssp EEETTSEEEEEEC--
T ss_pred EEeCCCEEEEEECCC
Confidence 788899999998754
No 97
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.72 E-value=0.92 Score=49.23 Aligned_cols=274 Identities=14% Similarity=0.116 Sum_probs=141.2
Q ss_pred cEEEEEEC------CCEEEEEECCCeEEEEEEcCcEEEEEee-ccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEE
Q 001387 490 SVNVATAN------ASQVLLATGGGHLVYLEIGDGILTEVKH-AQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRI 562 (1088)
Q Consensus 490 ~I~~a~~~------~~~lvv~~~~~~l~~~~~~~~~l~~~~~-~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i 562 (1088)
.|.+.+.. +..++-+..++.+...+...++...... ..-...|.|+++.+ ....++.|.+ |+.+++
T Consensus 34 ~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~------~~~~l~s~s~-D~~i~l 106 (321)
T 3ow8_A 34 AIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH------TLPIAASSSL-DAHIRL 106 (321)
T ss_dssp CEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECS------SSSEEEEEET-TSEEEE
T ss_pred cEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECC------CCCEEEEEeC-CCcEEE
Confidence 46665543 2355555567777776766544332211 12245688998864 2457777777 999999
Q ss_pred EECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceE
Q 001387 563 FSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTH 642 (1088)
Q Consensus 563 ~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~ 642 (1088)
|++.+.+.+...... .....++.+. .+..+|+.|..+|.+..|.+.... .. ........++.-..+. .+...
T Consensus 107 Wd~~~~~~~~~~~~~-~~~~~~~~~s--pdg~~l~~g~~dg~v~i~~~~~~~--~~--~~~~~~~~~v~~~~~s-pdg~~ 178 (321)
T 3ow8_A 107 WDLENGKQIKSIDAG-PVDAWTLAFS--PDSQYLATGTHVGKVNIFGVESGK--KE--YSLDTRGKFILSIAYS-PDGKY 178 (321)
T ss_dssp EETTTTEEEEEEECC-TTCCCCEEEC--TTSSEEEEECTTSEEEEEETTTCS--EE--EEEECSSSCEEEEEEC-TTSSE
T ss_pred EECCCCCEEEEEeCC-CccEEEEEEC--CCCCEEEEEcCCCcEEEEEcCCCc--ee--EEecCCCceEEEEEEC-CCCCE
Confidence 999875544322111 1122334333 245688999999999988765321 10 1111112222212221 12233
Q ss_pred EEEec-CCceEEEec-CCcEEE-eecccccceeeeccCCCCCCCeEEEEe-CCeEEEEEEcCCCCeEEEEEeC-CCccCe
Q 001387 643 VFAAS-DRPTVIYSS-NKKLLY-SNVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPL-GEHPRR 717 (1088)
Q Consensus 643 v~~~~-~~p~~i~~~-~~~~~~-~~l~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l-~~tp~~ 717 (1088)
+...+ +....++.- .++... ..-+..++.+++ |+. ....|+... ++.+++-.+.... ..+.+.- ...+..
T Consensus 179 lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~-~sp--d~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~h~~~v~~ 253 (321)
T 3ow8_A 179 LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT-FSP--DSQLLVTASDDGYIKIYDVQHAN--LAGTLSGHASWVLN 253 (321)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEE-ECT--TSCEEEEECTTSCEEEEETTTCC--EEEEECCCSSCEEE
T ss_pred EEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEE-EcC--CCCEEEEEcCCCeEEEEECCCcc--eeEEEcCCCCceEE
Confidence 33333 222223322 222211 111112232221 221 112344433 5678887776533 2233332 234677
Q ss_pred EEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCC
Q 001387 718 ICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENE 797 (1088)
Q Consensus 718 i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~ 797 (1088)
++++|+.+.++.++.+ ..|++.|..+.+.+..+. .....+.+++ +..+ ..+|+.|.
T Consensus 254 ~~~sp~~~~l~s~s~D----------~~v~iwd~~~~~~~~~~~-~h~~~v~~v~---~s~~-g~~l~s~~--------- 309 (321)
T 3ow8_A 254 VAFCPDDTHFVSSSSD----------KSVKVWDVGTRTCVHTFF-DHQDQVWGVK---YNGN-GSKIVSVG--------- 309 (321)
T ss_dssp EEECTTSSEEEEEETT----------SCEEEEETTTTEEEEEEC-CCSSCEEEEE---ECTT-SSEEEEEE---------
T ss_pred EEECCCCCEEEEEeCC----------CcEEEEeCCCCEEEEEEc-CCCCcEEEEE---ECCC-CCEEEEEe---------
Confidence 8999988877666543 469999999888877653 2234455543 4433 44566554
Q ss_pred CcceEEEEEEE
Q 001387 798 PTKGRILVFIV 808 (1088)
Q Consensus 798 ~~~Gri~v~~i 808 (1088)
..|.|.+|+.
T Consensus 310 -~d~~i~vwd~ 319 (321)
T 3ow8_A 310 -DDQEIHIYDC 319 (321)
T ss_dssp -TTCCEEEEEC
T ss_pred -CCCeEEEEeC
Confidence 2367777763
No 98
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=96.66 E-value=1.6 Score=53.10 Aligned_cols=242 Identities=13% Similarity=0.155 Sum_probs=124.5
Q ss_pred CceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCc---eEEecCC-CCcCceeEEeeeecCceEEEEEeCCCc
Q 001387 529 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNL---ITKEHLG-GEIIPRSVLLCAFEGISYLLCALGDGH 604 (1088)
Q Consensus 529 ~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~---~~~~~l~-~~~~p~si~~~~~~~~~~L~vgl~~G~ 604 (1088)
...|+|+++.+- .+.+++.|.. |++|++|++..... .....+. ......++.+.. +..+|+.|..||.
T Consensus 382 ~~~V~~v~~~~~-----~~~~l~s~s~-D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~--~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 382 TDMVTAIATPID-----NADIIVSASR-DKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS--DGQFALSGSWDGE 453 (694)
T ss_dssp SSCEEEEECCTT-----CCSEEEEEET-TSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT--TSSEEEEEETTSE
T ss_pred CceeEEEEecCC-----CCCEEEEEeC-CCcEEEEEccCCCcccccccceecCCCCcEEEEEECC--CCCEEEEEeCCCc
Confidence 467899988541 2467777777 99999999864221 1111121 112334554432 4578889999999
Q ss_pred EEEEEEecCCCccccceeeecC-ccceeEEEEEeCCceEEEEecC-CceEEEecCCcEEEeecc----cccceeeeccCC
Q 001387 605 LLNFLLNMKTGELTDRKKVSLG-TQPITLRTFSSKNTTHVFAASD-RPTVIYSSNKKLLYSNVN----LKEVSHMCPFNS 678 (1088)
Q Consensus 605 l~~y~~~~~~~~l~~~~~~~lG-~~pv~l~~~~~~~~~~v~~~~~-~p~~i~~~~~~~~~~~l~----~~~i~~~~~f~~ 678 (1088)
+..|.+... .. .+ ...| ..+|.=..+. .+...++..|. +...+....+...+.... .........|+.
T Consensus 454 v~vwd~~~~--~~--~~-~~~~h~~~v~~~~~s-~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 527 (694)
T 3dm0_A 454 LRLWDLAAG--VS--TR-RFVGHTKDVLSVAFS-LDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP 527 (694)
T ss_dssp EEEEETTTT--EE--EE-EEECCSSCEEEEEEC-TTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS
T ss_pred EEEEECCCC--cc--ee-EEeCCCCCEEEEEEe-CCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC
Confidence 999876432 11 11 1112 2233222222 12223333333 232222222221111100 011112223332
Q ss_pred CCCCCeEEEEe-CCeEEEEEEcCCCCeEEEEEeC-CCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceE
Q 001387 679 AAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPL-GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEF 756 (1088)
Q Consensus 679 ~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l-~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~ 756 (1088)
......++..+ ++.+++-.+.... ..+.+.- ...+..++++|+.+.++.++.+ +.|++.|..+.+.
T Consensus 528 ~~~~~~l~s~s~d~~v~vwd~~~~~--~~~~~~~h~~~v~~v~~spdg~~l~sg~~D----------g~i~iwd~~~~~~ 595 (694)
T 3dm0_A 528 NTLQPTIVSASWDKTVKVWNLSNCK--LRSTLAGHTGYVSTVAVSPDGSLCASGGKD----------GVVLLWDLAEGKK 595 (694)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSEEEEEETT----------SBCEEEETTTTEE
T ss_pred CCCcceEEEEeCCCeEEEEECCCCc--EEEEEcCCCCCEEEEEEeCCCCEEEEEeCC----------CeEEEEECCCCce
Confidence 22222344433 7778887776432 2233322 3456788999988877766543 4689999988887
Q ss_pred EEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeE
Q 001387 757 ISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKL 813 (1088)
Q Consensus 757 i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl 813 (1088)
+..+ ..+..+.+++ +.. ...+++.|+ .+.|.+|++..+++
T Consensus 596 ~~~~--~~~~~v~~~~---~sp-~~~~l~~~~-----------~~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 596 LYSL--EANSVIHALC---FSP-NRYWLCAAT-----------EHGIKIWDLESKSI 635 (694)
T ss_dssp EECC--BCSSCEEEEE---ECS-SSSEEEEEE-----------TTEEEEEETTTTEE
T ss_pred EEEe--cCCCcEEEEE---EcC-CCcEEEEEc-----------CCCEEEEECCCCCC
Confidence 6544 3444555543 443 345565554 13488888875543
No 99
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=96.65 E-value=0.44 Score=52.68 Aligned_cols=228 Identities=8% Similarity=0.028 Sum_probs=132.1
Q ss_pred CCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEE-EEEeee
Q 001387 712 GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYY-CVGTAY 790 (1088)
Q Consensus 712 ~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i-~VGT~~ 790 (1088)
....+.++++|+.+.+++++.+ .++++|..+.+.+....+.. +.++ .+... .+++ ++|.
T Consensus 19 ~~~V~~v~fs~dg~~la~g~~~-----------~~~iw~~~~~~~~~~~~~~~---~~~~---~~~~~-~~~~~~~~~-- 78 (355)
T 3vu4_A 19 SNPVTDYEFNQDQSCLILSTLK-----------SFEIYNVHPVAHIMSQEMRH---LSKV---RMLHR-TNYVAFVTG-- 78 (355)
T ss_dssp CCCCCEEEECTTSSEEEEECSS-----------EEEEEEETTEEEEEEEECSC---CCEE---EECTT-SSEEEEECS--
T ss_pred CCceEEEEECCCCCEEEEEcCC-----------EEEEEecCCcceeeeeecCC---eEEE---EEcCC-CCEEEEEEC--
Confidence 3567889999999877766421 36788877777666555542 2222 22222 3444 4443
Q ss_pred eCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccccCeEEEEECCEEEEEEeeeccCcccccccccccccceEE
Q 001387 791 VLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILA 870 (1088)
Q Consensus 791 ~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~g~Lv~~~g~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~ 870 (1088)
..|.|.+|+...++. +...+..++|.+++.-.+.++++.++++++|++. .+.+.+... ......
T Consensus 79 --------~d~~v~iWd~~~~~~--~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~---~~~~~~~~~---~~~~~~ 142 (355)
T 3vu4_A 79 --------VKEVVHIWDDVKKQD--VSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFG---NPWKRITDD---IRFGGV 142 (355)
T ss_dssp --------STTEEEEEETTTTEE--EEEEECSSCEEEEEECSSEEEEEETTEEEEEESS---TTCCBSSCC---EEEEEE
T ss_pred --------CccEEEEEECCCCcE--EEEEECCCceEEEEEcCCEEEEEEcCEEEEEECC---CCceeeEEe---ccCCce
Confidence 225899998876654 3345678899999977888999999999998863 121222221 111122
Q ss_pred EEEEEeCCEEEE--EeccccEEEEEEeccC------C-----e----EEEEeccCCCceeEEEEEeeCce-EEEEccCCc
Q 001387 871 LYVQTRGDFIVV--GDLMKSISLLIYKHEE------G-----A----IEERARDYNANWMSAVEILDDDI-YLGAENNFN 932 (1088)
Q Consensus 871 ~~l~~~~~~I~v--gD~~~Sv~~~~~~~~~------~-----~----l~~~~~D~~~~~v~~~~~l~~~~-~l~~D~~gn 932 (1088)
..+.. +++++ |+....+.++..+... . . +..+ ..+...++++.+-.++. ++.+..+|.
T Consensus 143 ~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~--~~h~~~v~~~~~s~~g~~l~s~s~d~~ 218 (355)
T 3vu4_A 143 CEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI--KAHTNPIKMVRLNRKSDMVATCSQDGT 218 (355)
T ss_dssp EEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEE--CCCSSCEEEEEECTTSSEEEEEETTCS
T ss_pred EEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEE--EccCCceEEEEECCCCCEEEEEeCCCC
Confidence 22322 66665 4666666665433211 0 0 1222 23455677887766654 567788998
Q ss_pred -EEEEeeCCCCCCcccccceeEEEEEE---cCCccceEEeeeeeecCCCCCCCCccEEEEEcccccEEEEEe
Q 001387 933 -LFTVRKNSEGATDEERGRLEVVGEYH---LGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIAS 1000 (1088)
Q Consensus 933 -l~~l~~~~~~~~~~~~~~L~~~~~f~---lg~~v~~~~~~~l~~~~~~~~~~~~~~~l~~t~~G~i~~l~~ 1000 (1088)
+.++..... .....+. ....|+++.- . .....++.++.+|.|...-.
T Consensus 219 ~v~iwd~~~~----------~~~~~~~~g~h~~~v~~~~~---s--------~~~~~l~s~s~d~~v~iw~~ 269 (355)
T 3vu4_A 219 IIRVFKTEDG----------VLVREFRRGLDRADVVDMKW---S--------TDGSKLAVVSDKWTLHVFEI 269 (355)
T ss_dssp EEEEEETTTC----------CEEEEEECTTCCSCEEEEEE---C--------TTSCEEEEEETTCEEEEEES
T ss_pred EEEEEECCCC----------cEEEEEEcCCCCCcEEEEEE---C--------CCCCEEEEEECCCEEEEEEc
Confidence 988876421 1223343 3345555432 1 13456788889999886643
No 100
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=96.64 E-value=1.2 Score=49.73 Aligned_cols=278 Identities=13% Similarity=0.135 Sum_probs=136.3
Q ss_pred CCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCC-----------------CCcCceeEEeeee
Q 001387 528 LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLG-----------------GEIIPRSVLLCAF 590 (1088)
Q Consensus 528 l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~-----------------~~~~p~si~~~~~ 590 (1088)
-...|.|++++| .+.+++.|. ++.+.+|++.+.+.+....-. .+....++.+.
T Consensus 63 h~~~V~~v~fsp------dg~~la~g~--~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-- 132 (393)
T 1erj_A 63 HTSVVCCVKFSN------DGEYLATGC--NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS-- 132 (393)
T ss_dssp CSSCCCEEEECT------TSSEEEEEC--BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC--
T ss_pred CCCEEEEEEECC------CCCEEEEEc--CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEEC--
Confidence 456789999976 256777764 678999998765543321100 00112344333
Q ss_pred cCceEEEEEeCCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEecCCceEEEec--CCcEEEeecccc
Q 001387 591 EGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSS--NKKLLYSNVNLK 668 (1088)
Q Consensus 591 ~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~i~~~--~~~~~~~~l~~~ 668 (1088)
.+..+|+.|..||.+..|.+.. ++.. +...--..+|.=..+. .+...++..+..-.+..++ .++....--...
T Consensus 133 ~dg~~l~s~~~d~~i~iwd~~~--~~~~--~~~~~h~~~v~~~~~~-p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~ 207 (393)
T 1erj_A 133 PDGKFLATGAEDRLIRIWDIEN--RKIV--MILQGHEQDIYSLDYF-PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED 207 (393)
T ss_dssp TTSSEEEEEETTSCEEEEETTT--TEEE--EEECCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred CCCCEEEEEcCCCeEEEEECCC--CcEE--EEEccCCCCEEEEEEc-CCCCEEEEecCCCcEEEEECCCCeeEEEEEcCC
Confidence 2456888999999999887543 2111 1111112233222221 1223333333333332222 222211100112
Q ss_pred cceeeeccCCCCCCCeEEEEe-CCeEEEEEEcCCCCeEEEEEe--------CCCccCeEEEecCCCEEEEEEeecCCCcC
Q 001387 669 EVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIP--------LGEHPRRICHQEQSRTFAICSLKNQSCAE 739 (1088)
Q Consensus 669 ~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~--------l~~tp~~i~y~~~~~~~~v~~~~~~~~~~ 739 (1088)
.+..++ ++. .-+..++... ++.+++-.+.... ..+++. -...+..++++|+.+.++.++.+
T Consensus 208 ~v~~~~-~~~-~~~~~l~~~s~d~~v~iwd~~~~~--~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d------ 277 (393)
T 1erj_A 208 GVTTVA-VSP-GDGKYIAAGSLDRAVRVWDSETGF--LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD------ 277 (393)
T ss_dssp CEEEEE-ECS-TTCCEEEEEETTSCEEEEETTTCC--EEEEEC------CCCSSCEEEEEECTTSSEEEEEETT------
T ss_pred CcEEEE-EEC-CCCCEEEEEcCCCcEEEEECCCCc--EEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC------
Confidence 222222 211 1122344433 6777777665432 233331 12356778999988877766543
Q ss_pred cceeEEEEEEeCCCceEEE----------EEECC-CCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEE
Q 001387 740 ESEMHFVRLLDDQTFEFIS----------TYPLD-TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIV 808 (1088)
Q Consensus 740 ~~~~s~l~lid~~t~~~i~----------~~~~~-~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i 808 (1088)
..|++.|..+..... ...+. ....+.+++ +.. ...+++.|+ ..|.|++|++
T Consensus 278 ----~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~---~~~-~~~~l~sgs----------~D~~v~iwd~ 339 (393)
T 1erj_A 278 ----RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA---TTQ-NDEYILSGS----------KDRGVLFWDK 339 (393)
T ss_dssp ----SEEEEEEC---------------CEEEEEECCSSCEEEEE---ECG-GGCEEEEEE----------TTSEEEEEET
T ss_pred ----CEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEE---ECC-CCCEEEEEe----------CCCeEEEEEC
Confidence 467887765432211 01111 122344433 222 346777665 3478999988
Q ss_pred eCCeEEEEEEEEecCceeEecccc-------CeEEEEEC--CEEEEEEee
Q 001387 809 EDGKLQLIAEKETKGAVYSLNAFN-------GKLLAAIN--QKIQLYKWM 849 (1088)
Q Consensus 809 ~~~kl~~~~~~~~~g~v~ai~~~~-------g~Lv~~~g--~~l~v~~~~ 849 (1088)
..++.... -..+.++|++++... +.++++.+ .+|+++++.
T Consensus 340 ~~~~~~~~-l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 340 KSGNPLLM-LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp TTCCEEEE-EECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CCCeEEEE-ECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 76553222 234678899887543 44444433 678887763
No 101
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=96.63 E-value=0.15 Score=57.59 Aligned_cols=199 Identities=10% Similarity=0.041 Sum_probs=112.7
Q ss_pred CccCeEEEecCC-CEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEE-CCCCceEeEEEEEEEcCCCceEEEEEeee
Q 001387 713 EHPRRICHQEQS-RTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYP-LDTFEYGCSILSCSFSDDSNVYYCVGTAY 790 (1088)
Q Consensus 713 ~tp~~i~y~~~~-~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~-~~~~E~v~si~~~~~~~~~~~~i~VGT~~ 790 (1088)
..+..+.++|.. +.++.++.+ +.|++.|..+.+.+..+. -.....+.+++ +.. ...++++|+
T Consensus 132 ~~v~~~~~~p~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~---~~~-~~~~l~~~~-- 195 (402)
T 2aq5_A 132 KRVGIVAWHPTAQNVLLSAGCD----------NVILVWDVGTGAAVLTLGPDVHPDTIYSVD---WSR-DGALICTSC-- 195 (402)
T ss_dssp SCEEEEEECSSBTTEEEEEETT----------SCEEEEETTTTEEEEEECTTTCCSCEEEEE---ECT-TSSCEEEEE--
T ss_pred CeEEEEEECcCCCCEEEEEcCC----------CEEEEEECCCCCccEEEecCCCCCceEEEE---ECC-CCCEEEEEe--
Confidence 456778899887 455555432 469999998888877764 23344555554 333 345677665
Q ss_pred eCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCc-eeEeccc-cCeEEEEE-----CCEEEEEEeeeccCcccccccc-c
Q 001387 791 VLPEENEPTKGRILVFIVEDGKLQLIAEKETKGA-VYSLNAF-NGKLLAAI-----NQKIQLYKWMLRDDGTRELQSE-C 862 (1088)
Q Consensus 791 ~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~-v~ai~~~-~g~Lv~~~-----g~~l~v~~~~~~~~~~~~L~~~-~ 862 (1088)
..|.|.+|++..++..........++ +.+++-. +|+++++. +..|++|++. . +...+... .
T Consensus 196 --------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~--~-~~~~~~~~~~ 264 (402)
T 2aq5_A 196 --------RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTK--H-LEEPLSLQEL 264 (402)
T ss_dssp --------TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETT--B-CSSCSEEEEC
T ss_pred --------cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCc--c-ccCCceEEec
Confidence 34899999987666443332334444 6666544 46655543 4677777652 1 11111111 1
Q ss_pred ccccceEEEEEEEeCCEEE-EEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCceEEEEccCCcEEEEeeC
Q 001387 863 GHHGHILALYVQTRGDFIV-VGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKN 939 (1088)
Q Consensus 863 ~~~~~~~~~~l~~~~~~I~-vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~ 939 (1088)
........+.....+++++ +|..-..+.++.+......+..+..-.....+.++.+..++.++++ .++.+.+++..
T Consensus 265 ~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s-~~~~~~~~~l~ 341 (402)
T 2aq5_A 265 DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN-KCEIARFYKLH 341 (402)
T ss_dssp CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG-GTEEEEEEEEE
T ss_pred cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee-cceeEEEEEcC
Confidence 1112223333444567775 4555667777666543322555544334566777878777665554 34567777665
No 102
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=96.63 E-value=1.1 Score=49.05 Aligned_cols=275 Identities=9% Similarity=0.073 Sum_probs=146.0
Q ss_pred CCeEEEEEEcCCCCeEEEEEeC--CCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCc-
Q 001387 690 EGELTIGTIDDIQKLHIRSIPL--GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFE- 766 (1088)
Q Consensus 690 ~~~l~i~~l~~~~~~~~~~i~l--~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E- 766 (1088)
++.++|-.+..........+.- ....+.++++|+.+.++.++.+ ..+++.|..+.+......+..++
T Consensus 37 D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D----------~~v~iw~~~~~~~~~~~~~~~h~~ 106 (345)
T 3fm0_A 37 DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD----------ATTCIWKKNQDDFECVTTLEGHEN 106 (345)
T ss_dssp TSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT----------SCEEEEEECCC-EEEEEEECCCSS
T ss_pred CCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC----------CcEEEEEccCCCeEEEEEccCCCC
Confidence 5667777665432111122222 2457789999998887776543 35677765444322223344333
Q ss_pred eEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC-eEEEEEEE-EecCceeEeccc-cC-eEEEEE-CC
Q 001387 767 YGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG-KLQLIAEK-ETKGAVYSLNAF-NG-KLLAAI-NQ 841 (1088)
Q Consensus 767 ~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~-kl~~~~~~-~~~g~v~ai~~~-~g-~Lv~~~-g~ 841 (1088)
.+.+++ +.. ...+++.|. ..|.|.+|++... ..+.+... ...++|++++-- ++ .|+.+. ..
T Consensus 107 ~v~~v~---~sp-~~~~l~s~s----------~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~ 172 (345)
T 3fm0_A 107 EVKSVA---WAP-SGNLLATCS----------RDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDD 172 (345)
T ss_dssp CEEEEE---ECT-TSSEEEEEE----------TTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTS
T ss_pred CceEEE---EeC-CCCEEEEEE----------CCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCC
Confidence 344443 433 356777775 3478999999743 34444332 456788888744 34 454443 46
Q ss_pred EEEEEEeeeccCccccc-ccccccccceEEEEEEEeCCEEEEEeccccEEEEEEeccCC-------------eEEEEecc
Q 001387 842 KIQLYKWMLRDDGTREL-QSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEG-------------AIEERARD 907 (1088)
Q Consensus 842 ~l~v~~~~~~~~~~~~L-~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~-------------~l~~~~~D 907 (1088)
.+.+|+.. .+.... .....+...+..+.....+++++.|..-..+.++....... +.......
T Consensus 173 ~i~~w~~~---~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (345)
T 3fm0_A 173 TVKLYREE---EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG 249 (345)
T ss_dssp CEEEEEEE---TTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECS
T ss_pred cEEEEEec---CCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecC
Confidence 78888753 111111 11111222233333334577999999888888865432111 11111122
Q ss_pred CCCceeEEEEEeeCc-eEEEEccCCcEEEEeeCCCCCCcccccceeEEEEEE--cCCccceEEeeeeeecCCCCCCCCcc
Q 001387 908 YNANWMSAVEILDDD-IYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYH--LGEFVNRFRHGSLVMRLPDSDVGQIP 984 (1088)
Q Consensus 908 ~~~~~v~~~~~l~~~-~~l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~--lg~~v~~~~~~~l~~~~~~~~~~~~~ 984 (1088)
.+...+.++.+-.++ .++.+..++.+.++..++..... ...+......+ ....|+++.- . | ....
T Consensus 250 ~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~--~~~~~~~~~~~~~h~~~V~~v~~---~---p----~~~~ 317 (345)
T 3fm0_A 250 FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQ--QPTFSLTAHLHQAHSQDVNCVAW---N---P----KEPG 317 (345)
T ss_dssp SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTT--SCCEEEEEEETTSSSSCEEEEEE---C---S----SSTT
T ss_pred CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcc--eeeEEEEeeecccccCcEeEeEE---e---C----CCce
Confidence 355667777766544 46777789999999876533211 11122222221 1244555432 1 1 1223
Q ss_pred EEEEEcccccEEEEEecCh
Q 001387 985 TVIFGTVNGVIGVIASLPH 1003 (1088)
Q Consensus 985 ~~l~~t~~G~i~~l~~l~~ 1003 (1088)
.+..|+.||.|..-..-+.
T Consensus 318 ~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 318 LLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp EEEEEETTSCEEEEEECC-
T ss_pred EEEEcCCCCcEEEEEecCC
Confidence 5777889999987766543
No 103
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=96.61 E-value=0.75 Score=48.72 Aligned_cols=200 Identities=12% Similarity=0.173 Sum_probs=106.8
Q ss_pred ccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCC
Q 001387 714 HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLP 793 (1088)
Q Consensus 714 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~ 793 (1088)
.|..+++.+..+.+.|+... ....|..+|+ +.+.+..+.......+.++. +..++ .+++ +..
T Consensus 78 ~p~~i~~~~~~g~l~v~~~~--------~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~---~~~~g-~l~v-~~~---- 139 (286)
T 1q7f_A 78 YPNRVAVVRNSGDIIVTERS--------PTHQIQIYNQ-YGQFVRKFGATILQHPRGVT---VDNKG-RIIV-VEC---- 139 (286)
T ss_dssp SEEEEEEETTTTEEEEEECG--------GGCEEEEECT-TSCEEEEECTTTCSCEEEEE---ECTTS-CEEE-EET----
T ss_pred CceEEEEEcCCCeEEEEcCC--------CCCEEEEECC-CCcEEEEecCccCCCceEEE---EeCCC-CEEE-EEC----
Confidence 57788885444444444321 0246888885 56666666555445565553 34333 3443 321
Q ss_pred CCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cCeEEEEE--CCEEEEEEeeeccCcccccccccccccceEE
Q 001387 794 EENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAI--NQKIQLYKWMLRDDGTRELQSECGHHGHILA 870 (1088)
Q Consensus 794 ~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g~Lv~~~--g~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~ 870 (1088)
..++|++|+.....+..+........+.+|+.- +|+|+++. ++.|++|+. ++ +.+...........+
T Consensus 140 -----~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~----~g-~~~~~~~~~g~~~~p 209 (286)
T 1q7f_A 140 -----KVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY----EG-QYLRQIGGEGITNYP 209 (286)
T ss_dssp -----TTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET----TC-CEEEEESCTTTSCSE
T ss_pred -----CCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC----CC-CEEEEEccCCccCCC
Confidence 246888887433333322211112346666644 57888775 567887763 22 112111111001234
Q ss_pred EEEEEe-CCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCceEEEEccCCcEEEEeeCCC
Q 001387 871 LYVQTR-GDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSE 941 (1088)
Q Consensus 871 ~~l~~~-~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~~~ 941 (1088)
..+... ++.++++|....=.+..|+.+...+..+..........++.+-.++.++++|.++.+.++++...
T Consensus 210 ~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 210 IGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSCC
T ss_pred cEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEcccc
Confidence 444443 33688888765312345677666666555443333445555555667777788889999988654
No 104
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=96.52 E-value=1.2 Score=48.06 Aligned_cols=266 Identities=14% Similarity=0.132 Sum_probs=142.5
Q ss_pred ccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEe-CCCcEEEEEEecCCCccccceeeec
Q 001387 547 SQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCAL-GDGHLLNFLLNMKTGELTDRKKVSL 625 (1088)
Q Consensus 547 ~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl-~~G~l~~y~~~~~~~~l~~~~~~~l 625 (1088)
+..+.+....++.|.+|++.+.+......... ..| .+.+.+ +..+|++.. .+|.+..+.. .++.+. .+....
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~-~~~~s~--dg~~l~~~~~~~~~i~~~d~--~~~~~~-~~~~~~ 81 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGY-DFV-DTAITS--DCSNVVVTSDFCQTLVQIET--QLEPPK-VVAIQE 81 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEEEECCC-CEE-EEEECS--SSCEEEEEESTTCEEEEEEC--SSSSCE-EEEEEE
T ss_pred CCEEEEEecCCCeEEEEeCcccceeeeEEccC-Ccc-eEEEcC--CCCEEEEEeCCCCeEEEEEC--CCCcee-EEeccc
Confidence 45666666668999999998766654333331 234 554443 334566654 4777766554 344431 233445
Q ss_pred Ccccee-EEEEEeCCceEEEEecCC----ceEEEec-CCcE-EEeecccccceeeeccCCCCCCCeEEEEe--CCe-EEE
Q 001387 626 GTQPIT-LRTFSSKNTTHVFAASDR----PTVIYSS-NKKL-LYSNVNLKEVSHMCPFNSAAFPDSLAIAK--EGE-LTI 695 (1088)
Q Consensus 626 G~~pv~-l~~~~~~~~~~v~~~~~~----p~~i~~~-~~~~-~~~~l~~~~i~~~~~f~~~~~~~~l~~~~--~~~-l~i 695 (1088)
+..|.. +. +. .+...+++.... ...++.. .++. ...+.. .... ...|+. -.+.++.++ ++. +.+
T Consensus 82 ~~~~~~~~~-~s-~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~-~~~~sp--dg~~l~~~~~~~~~~i~~ 155 (331)
T 3u4y_A 82 GQSSMADVD-IT-PDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAV-GIAISP--NGNGLILIDRSSANTVRR 155 (331)
T ss_dssp CSSCCCCEE-EC-TTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEE-EEEECT--TSSCEEEEEETTTTEEEE
T ss_pred CCCCccceE-EC-CCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCcc-ceEECC--CCCEEEEEecCCCceEEE
Confidence 556655 42 22 233445544333 2222222 2322 111211 1111 111221 112344443 366 888
Q ss_pred EEEcCCCCe---EEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceE---EEEEECCCCceEe
Q 001387 696 GTIDDIQKL---HIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEF---ISTYPLDTFEYGC 769 (1088)
Q Consensus 696 ~~l~~~~~~---~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~---i~~~~~~~~E~v~ 769 (1088)
..++....+ ..+.++.+..|+.++++|+.+.+++++... ..+.++|..+++. +..+.. +..+.
T Consensus 156 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~---------~~v~v~d~~~~~~~~~~~~~~~--~~~~~ 224 (331)
T 3u4y_A 156 FKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIG---------NSIGILETQNPENITLLNAVGT--NNLPG 224 (331)
T ss_dssp EEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTT---------TEEEEEECSSTTSCEEEEEEEC--SSCCC
T ss_pred EEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCC---------CeEEEEECCCCcccceeeeccC--CCCCc
Confidence 888764332 245567788899999999998766665432 4789999888776 655553 34444
Q ss_pred EEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEec-----Ccee-----EeccccCeEEEEE
Q 001387 770 SILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETK-----GAVY-----SLNAFNGKLLAAI 839 (1088)
Q Consensus 770 si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~-----g~v~-----ai~~~~g~Lv~~~ 839 (1088)
++. +..++ .+++++.. ..+.|.+|+...++++.+...... .+.. ++.+-+.+|+++.
T Consensus 225 ~~~---~spdg-~~l~v~~~---------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~ 291 (331)
T 3u4y_A 225 TIV---VSRDG-STVYVLTE---------STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISA 291 (331)
T ss_dssp CEE---ECTTS-SEEEEECS---------SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEE
T ss_pred eEE---ECCCC-CEEEEEEc---------CCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEec
Confidence 433 44333 45555432 346788988877888766644322 2222 3333344566665
Q ss_pred C--CEEEEEEee
Q 001387 840 N--QKIQLYKWM 849 (1088)
Q Consensus 840 g--~~l~v~~~~ 849 (1088)
+ +.+.+|+++
T Consensus 292 ~~~~~v~v~d~~ 303 (331)
T 3u4y_A 292 NISRELKVFTIS 303 (331)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCcEEEEEec
Confidence 3 578887763
No 105
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=96.51 E-value=1.4 Score=53.69 Aligned_cols=278 Identities=15% Similarity=0.138 Sum_probs=140.6
Q ss_pred cEEEEEEC---CCEEEEEECCCeEEEEEEcCc----EEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEE
Q 001387 490 SVNVATAN---ASQVLLATGGGHLVYLEIGDG----ILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRI 562 (1088)
Q Consensus 490 ~I~~a~~~---~~~lvv~~~~~~l~~~~~~~~----~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i 562 (1088)
.|.+.+.+ +..++-+..++.+.+.++..+ .............|.|+++.+ ...+++.|.+ |+.|++
T Consensus 384 ~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~------~g~~l~sgs~-Dg~v~v 456 (694)
T 3dm0_A 384 MVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS------DGQFALSGSW-DGELRL 456 (694)
T ss_dssp CEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT------TSSEEEEEET-TSEEEE
T ss_pred eeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC------CCCEEEEEeC-CCcEEE
Confidence 46665543 235555556777777776531 111111112346789999865 2578888888 999999
Q ss_pred EECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeee---cC-ccceeEEEEEeC
Q 001387 563 FSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVS---LG-TQPITLRTFSSK 638 (1088)
Q Consensus 563 ~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~---lG-~~pv~l~~~~~~ 638 (1088)
|++.+...+... ........++.+.. +..+|+.|..||.+..|..... . ..... -| ..++.-..+..+
T Consensus 457 wd~~~~~~~~~~-~~h~~~v~~~~~s~--~~~~l~s~s~D~~i~iwd~~~~---~--~~~~~~~~~~h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 457 WDLAAGVSTRRF-VGHTKDVLSVAFSL--DNRQIVSASRDRTIKLWNTLGE---C--KYTISEGGEGHRDWVSCVRFSPN 528 (694)
T ss_dssp EETTTTEEEEEE-ECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSC---E--EEEECSSTTSCSSCEEEEEECSC
T ss_pred EECCCCcceeEE-eCCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEECCCC---c--ceeeccCCCCCCCcEEEEEEeCC
Confidence 999764433211 11112334454432 4567889999999998864211 0 00010 01 112322223212
Q ss_pred Cc-eEEEEec-CCceEEEec-CCcEEE-eecccccceeeeccCCCCCCCeEEEEe-CCeEEEEEEcCCCCeEEEEEeCCC
Q 001387 639 NT-THVFAAS-DRPTVIYSS-NKKLLY-SNVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPLGE 713 (1088)
Q Consensus 639 ~~-~~v~~~~-~~p~~i~~~-~~~~~~-~~l~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l~~ 713 (1088)
+. ..++..+ +....++.- .+++.. ..-+...+.+++ |+. ....++... ++.+++-.+.... ....+....
T Consensus 529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~-~sp--dg~~l~sg~~Dg~i~iwd~~~~~--~~~~~~~~~ 603 (694)
T 3dm0_A 529 TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVA-VSP--DGSLCASGGKDGVVLLWDLAEGK--KLYSLEANS 603 (694)
T ss_dssp SSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE-ECT--TSSEEEEEETTSBCEEEETTTTE--EEECCBCSS
T ss_pred CCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEE-EeC--CCCEEEEEeCCCeEEEEECCCCc--eEEEecCCC
Confidence 21 2233333 222222221 222211 111112232222 221 122344433 6778887776543 334445556
Q ss_pred ccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCce---------------EeEEEEEEEcC
Q 001387 714 HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEY---------------GCSILSCSFSD 778 (1088)
Q Consensus 714 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~---------------v~si~~~~~~~ 778 (1088)
..+.++++|+...++.+. + ..|++.|..+.+.+..+....... +..+..+.+..
T Consensus 604 ~v~~~~~sp~~~~l~~~~-~----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp 672 (694)
T 3dm0_A 604 VIHALCFSPNRYWLCAAT-E----------HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA 672 (694)
T ss_dssp CEEEEEECSSSSEEEEEE-T----------TEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECT
T ss_pred cEEEEEEcCCCcEEEEEc-C----------CCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcC
Confidence 677889998876555442 2 248999998888887665432111 11122333443
Q ss_pred CCceEEEEEeeeeCCCCCCCcceEEEEEEEe
Q 001387 779 DSNVYYCVGTAYVLPEENEPTKGRILVFIVE 809 (1088)
Q Consensus 779 ~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~ 809 (1088)
...+|+.|. ..|.|.+|++.
T Consensus 673 -dg~~l~sgs----------~Dg~i~iW~i~ 692 (694)
T 3dm0_A 673 -DGSTLFSGY----------TDGVIRVWGIG 692 (694)
T ss_dssp -TSSEEEEEE----------TTSEEEEEEC-
T ss_pred -CCCEEEEEc----------CCCeEEEEecc
Confidence 345777665 34789998764
No 106
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=96.48 E-value=1.2 Score=47.67 Aligned_cols=136 Identities=15% Similarity=0.141 Sum_probs=80.1
Q ss_pred cEEEEecCCcceeeeeeCCCCCcEEEEEEC--CCEEEEEECCCeEEEEEEcCc-EEEEEeeccCCceeEEEEeCCCCCCC
Q 001387 468 SVRLVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLATGGGHLVYLEIGDG-ILTEVKHAQLEYEISCLDINPIGENP 544 (1088)
Q Consensus 468 ~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~~~~~l~~~~~~~~-~l~~~~~~~l~~~is~l~~~~~~~~~ 544 (1088)
.|++.+.++++.+..+.. ....|.+.+.+ +..++.+..++.+.+..+..+ .+... ...-...|.|+++.|.
T Consensus 78 ~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~-~~~h~~~v~~v~~~p~---- 151 (304)
T 2ynn_A 78 RIRVFNYNTGEKVVDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-FEGHEHFVMCVAFNPK---- 151 (304)
T ss_dssp EEEEEETTTCCEEEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEE-ECCCCSCEEEEEECTT----
T ss_pred EEEEEECCCCcEEEEEeC-CCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhh-hcccCCcEEEEEECCC----
Confidence 345555544444444432 22357666655 346666666788877777653 33222 1123466899999752
Q ss_pred CCccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEe
Q 001387 545 SYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLN 611 (1088)
Q Consensus 545 ~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~ 611 (1088)
....++.|.. |+.+++|++...................+.+....+..+|+.|..||.+..|.+.
T Consensus 152 -~~~~l~sgs~-D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~ 216 (304)
T 2ynn_A 152 -DPSTFASGCL-DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216 (304)
T ss_dssp -CTTEEEEEET-TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETT
T ss_pred -CCCEEEEEeC-CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCC
Confidence 2467888888 9999999997544332211111112233333333456789999999999988754
No 107
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=96.46 E-value=2.2 Score=50.38 Aligned_cols=277 Identities=10% Similarity=0.086 Sum_probs=156.0
Q ss_pred ccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecC
Q 001387 547 SQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLG 626 (1088)
Q Consensus 547 ~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG 626 (1088)
...++|....++++.+++..+.+++..-... ..|+.+.+.. +..+++++.++|.+..|.+...++ +..+++..|
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g--~~p~~v~~Sp--DGr~lyv~~~dg~V~viD~~~~t~--~~v~~i~~G 239 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG--YAVHISRLSA--SGRYLFVIGRDGKVNMIDLWMKEP--TTVAEIKIG 239 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECS--SCEEEEEECT--TSCEEEEEETTSEEEEEETTSSSC--CEEEEEECC
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeCC--CCccceEECC--CCCEEEEEcCCCeEEEEECCCCCC--cEeEEEecC
Confidence 4577777777899999999877776544433 4577766553 456889999999877766531232 333456678
Q ss_pred ccceeEEEEEe---CCceEEEEecCCc-eEEEecC--Cc-EEEeecccccce--------eeeccCCCCCCCeEEEEe--
Q 001387 627 TQPITLRTFSS---KNTTHVFAASDRP-TVIYSSN--KK-LLYSNVNLKEVS--------HMCPFNSAAFPDSLAIAK-- 689 (1088)
Q Consensus 627 ~~pv~l~~~~~---~~~~~v~~~~~~p-~~i~~~~--~~-~~~~~l~~~~i~--------~~~~f~~~~~~~~l~~~~-- 689 (1088)
..|..+. +.- .+...+++.+..+ .+...+. .+ +...++....+. .++.+........+++..
T Consensus 240 ~~P~~ia-~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~ 318 (567)
T 1qks_A 240 SEARSIE-TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 318 (567)
T ss_dssp SEEEEEE-ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCceeE-EccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence 8786543 321 1345666665433 2222221 11 222222211000 111111111111233322
Q ss_pred CCeEEEEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEEC-CCCceE
Q 001387 690 EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPL-DTFEYG 768 (1088)
Q Consensus 690 ~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~-~~~E~v 768 (1088)
.+.+.+........+.+..++.+..|+-+.++|+.+.+.|++... ..|.++|.++++.+..++. ...-++
T Consensus 319 ~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~s---------n~V~ViD~~t~kl~~~i~vgg~~Php 389 (567)
T 1qks_A 319 TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANAR---------NKLVVIDTKEGKLVAIEDTGGQTPHP 389 (567)
T ss_dssp TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGG---------TEEEEEETTTTEEEEEEECSSSSBCC
T ss_pred CCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCC---------CeEEEEECCCCcEEEEEeccCcCCCC
Confidence 466666655555567788999999999999999999888876432 4688899999998888776 332221
Q ss_pred eEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC-----eEEEEEEEEecCce-eEeccc-c-CeEEEEE-
Q 001387 769 CSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG-----KLQLIAEKETKGAV-YSLNAF-N-GKLLAAI- 839 (1088)
Q Consensus 769 ~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~-----kl~~~~~~~~~g~v-~ai~~~-~-g~Lv~~~- 839 (1088)
-.-..+ +..+..++++.+. -..|.|.+++.... .++.+...+..|.- ..|..- + .+|++..
T Consensus 390 g~g~~~-~~p~~g~v~~t~~---------~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~ 459 (567)
T 1qks_A 390 GRGANF-VHPTFGPVWATSH---------MGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDAT 459 (567)
T ss_dssp TTCEEE-EETTTEEEEEEEB---------SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECT
T ss_pred ccceee-ECCCCCcEEEeCC---------CCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecC
Confidence 111122 2222344444331 12357888877642 26666666665422 223222 3 3677766
Q ss_pred -------CCEEEEEEee
Q 001387 840 -------NQKIQLYKWM 849 (1088)
Q Consensus 840 -------g~~l~v~~~~ 849 (1088)
.+.|.+|+.+
T Consensus 460 ~~~~~~~~~~v~v~d~~ 476 (567)
T 1qks_A 460 LNPEAEISGSVAVFDIK 476 (567)
T ss_dssp TCSSHHHHTCEEEEEGG
T ss_pred CCCCcccCceEEEEECC
Confidence 3589998864
No 108
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=96.35 E-value=1.6 Score=47.52 Aligned_cols=115 Identities=11% Similarity=0.074 Sum_probs=69.7
Q ss_pred CcEEEEEECCCEEEEEECCCeEEEEEEcCcEEEEEeec--c-CCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEEC
Q 001387 489 YSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHA--Q-LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL 565 (1088)
Q Consensus 489 ~~I~~a~~~~~~lvv~~~~~~l~~~~~~~~~l~~~~~~--~-l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l 565 (1088)
..|.+.+.+++.++.+..++.+.+..+..+........ . -...|.|+++.| ...+++.|.+ |+.+++|++
T Consensus 15 ~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp------~~~~las~s~-D~~v~iw~~ 87 (330)
T 2hes_X 15 EKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP------HTSLLAAGSF-DSTVSIWAK 87 (330)
T ss_dssp SCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECT------TSSEEEEEET-TSCEEEEEC
T ss_pred CceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECC------CCCEEEEEeC-CCcEEEEEc
Confidence 35777777777666666678887777765322222212 1 345799999976 2568888888 999999998
Q ss_pred CCC-----CceEEecCC-CCcCceeEEeeeecCceEEEEEeCCCcEEEEEEec
Q 001387 566 PDL-----NLITKEHLG-GEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNM 612 (1088)
Q Consensus 566 ~~l-----~~~~~~~l~-~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~ 612 (1088)
... .......+. ......++.+.+ +..+|..|..||.+..|.+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--~g~~las~s~D~~v~iwd~~~ 138 (330)
T 2hes_X 88 EESADRTFEMDLLAIIEGHENEVKGVAWSN--DGYYLATCSRDKSVWIWETDE 138 (330)
T ss_dssp -------CCCEEEEEEC----CEEEEEECT--TSCEEEEEETTSCEEEEECCT
T ss_pred ccCcCccccceeEEEEcCCCCcEEEEEECC--CCCEEEEEeCCCEEEEEeccC
Confidence 421 111111111 112233443332 456888999999999998753
No 109
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=96.34 E-value=1.7 Score=47.94 Aligned_cols=228 Identities=14% Similarity=0.119 Sum_probs=115.6
Q ss_pred eCCCccCeEEEecCCCE-EEEEEeecCCCcCcc----eeEEEEEEeCC-CceEEE---EEECCCCceEeEEEEEEEcCCC
Q 001387 710 PLGEHPRRICHQEQSRT-FAICSLKNQSCAEES----EMHFVRLLDDQ-TFEFIS---TYPLDTFEYGCSILSCSFSDDS 780 (1088)
Q Consensus 710 ~l~~tp~~i~y~~~~~~-~~v~~~~~~~~~~~~----~~s~l~lid~~-t~~~i~---~~~~~~~E~v~si~~~~~~~~~ 780 (1088)
+.+..|..++++|+.+. +++.+.......... ....+.+++.. +++... .+..+....+.++ .+..++
T Consensus 80 ~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~spdG 156 (365)
T 1jof_A 80 PIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGM---VFDPTE 156 (365)
T ss_dssp ECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEE---EECTTS
T ss_pred ecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEE---EECCCC
Confidence 33345777888888775 333322000000000 12356666653 344332 2223344455444 345444
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEe-CCeEEEEEEEEe---cCceeEeccc-cC-eEEEEE--CCEEEEEEeeecc
Q 001387 781 NVYYCVGTAYVLPEENEPTKGRILVFIVE-DGKLQLIAEKET---KGAVYSLNAF-NG-KLLAAI--NQKIQLYKWMLRD 852 (1088)
Q Consensus 781 ~~~i~VGT~~~~~~e~~~~~Gri~v~~i~-~~kl~~~~~~~~---~g~v~ai~~~-~g-~Lv~~~--g~~l~v~~~~~~~ 852 (1088)
+ +++++.. ..++|++|++. .++++.+..... ...+.+++-- +| +|+++. ++++.+|.++. +
T Consensus 157 ~-~l~~~~~---------~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~-~ 225 (365)
T 1jof_A 157 T-YLYSADL---------TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP-A 225 (365)
T ss_dssp S-EEEEEET---------TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT-T
T ss_pred C-EEEEEcC---------CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeC-C
Confidence 4 4555431 23689999998 678876665543 2346665533 45 565554 46899988742 1
Q ss_pred Cccccc--cccccc----cc---------ceEEEE-EEEeCCEEEEEeccc------cEEEEEEeccCCeEEE----Ee-
Q 001387 853 DGTREL--QSECGH----HG---------HILALY-VQTRGDFIVVGDLMK------SISLLIYKHEEGAIEE----RA- 905 (1088)
Q Consensus 853 ~~~~~L--~~~~~~----~~---------~~~~~~-l~~~~~~I~vgD~~~------Sv~~~~~~~~~~~l~~----~~- 905 (1088)
.++... ...... .. ....+. ++..|.++++++... ++.++..+. .+++.. +.
T Consensus 226 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~-~g~~~~~~~~~~~ 304 (365)
T 1jof_A 226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD-CGSIEKQLFLSPT 304 (365)
T ss_dssp TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT-TSCEEEEEEEEEC
T ss_pred CCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECC-CCCEEEeeeeeec
Confidence 232211 011111 11 122233 334567899888654 687776653 345553 21
Q ss_pred ccCCCceeEEEEEe----eCceEEEEcc-CCcEEEEeeCCCCCCcccccceeEEEEEEcCCcc
Q 001387 906 RDYNANWMSAVEIL----DDDIYLGAEN-NFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFV 963 (1088)
Q Consensus 906 ~D~~~~~v~~~~~l----~~~~~l~~D~-~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v 963 (1088)
....++++ .+- +.+.+++++. .+.+.+++.+.+ .|...+.+.+++.+
T Consensus 305 ~~~~~~~~---a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~--------~l~~~~~~~~~~p~ 356 (365)
T 1jof_A 305 PTSGGHSN---AVSPCPWSDEWMAITDDQEGWLEIYRWKDE--------FLHRVARVRIPEPG 356 (365)
T ss_dssp SSCCTTCC---CEEECTTCTTEEEEECSSSCEEEEEEEETT--------EEEEEEEEECCSTT
T ss_pred CCCCcccc---eecCCCcCCCEEEEEEcCCCeEEEEEEchh--------hCceeeEEEcCCCc
Confidence 12233432 222 3345666665 488999988652 45555677777654
No 110
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.33 E-value=1.6 Score=47.46 Aligned_cols=227 Identities=11% Similarity=0.110 Sum_probs=115.0
Q ss_pred CceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCCC--------cCceeEEeeeecCceEEEEEe
Q 001387 529 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGE--------IIPRSVLLCAFEGISYLLCAL 600 (1088)
Q Consensus 529 ~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~--------~~p~si~~~~~~~~~~L~vgl 600 (1088)
...+.++++.+ ....++++.+.++.+.+|++.+.+.+........ ..|+++.+.. +..+++++.
T Consensus 88 ~~~~~~~~~s~------dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~ 159 (353)
T 3vgz_A 88 DLKPFGATINN------TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD--ATNTVYISG 159 (353)
T ss_dssp SSCCCSEEEET------TTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET--TTTEEEEEE
T ss_pred CCCcceEEECC------CCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC--CCCEEEEEe
Confidence 34455666643 2466777777789999999987666554333211 1256665543 234566655
Q ss_pred --CCCcEEEEEEecCCCccccceeee-cCccceeEEEEEeCCceEEEEecCCceEEEec--CCcEE-Eeecccc-cceee
Q 001387 601 --GDGHLLNFLLNMKTGELTDRKKVS-LGTQPITLRTFSSKNTTHVFAASDRPTVIYSS--NKKLL-YSNVNLK-EVSHM 673 (1088)
Q Consensus 601 --~~G~l~~y~~~~~~~~l~~~~~~~-lG~~pv~l~~~~~~~~~~v~~~~~~p~~i~~~--~~~~~-~~~l~~~-~i~~~ 673 (1088)
.+|.+..+. ..+++.. +... .|..|..+. +. .+...+++.+....+...+ .++.. ..+.... +-...
T Consensus 160 ~~~~~~i~~~d--~~~~~~~--~~~~~~~~~~~~~~-~s-~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 233 (353)
T 3vgz_A 160 IGKESVIWVVD--GGNIKLK--TAIQNTGKMSTGLA-LD-SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFF 233 (353)
T ss_dssp ESSSCEEEEEE--TTTTEEE--EEECCCCTTCCCCE-EE-TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCE
T ss_pred cCCCceEEEEc--CCCCceE--EEecCCCCccceEE-EC-CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCccc
Confidence 367666654 3333221 2222 343343222 22 2234455554333222222 23321 1111100 00000
Q ss_pred --eccCCCCCCCeEEEEeC--CeEEEEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEE
Q 001387 674 --CPFNSAAFPDSLAIAKE--GELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLL 749 (1088)
Q Consensus 674 --~~f~~~~~~~~l~~~~~--~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~li 749 (1088)
..|+. -.+.++.+.. +.+.+..+. ..-..+.++++. |..++++|+.+.+.+..... ..|.++
T Consensus 234 ~~~~~s~--dg~~l~~~~~~~~~v~~~d~~--~~~~~~~~~~~~-~~~~~~s~dg~~l~v~~~~~---------~~v~~~ 299 (353)
T 3vgz_A 234 INISLDT--ARQRAFITDSKAAEVLVVDTR--NGNILAKVAAPE-SLAVLFNPARNEAYVTHRQA---------GKVSVI 299 (353)
T ss_dssp EEEEEET--TTTEEEEEESSSSEEEEEETT--TCCEEEEEECSS-CCCEEEETTTTEEEEEETTT---------TEEEEE
T ss_pred ceEEECC--CCCEEEEEeCCCCEEEEEECC--CCcEEEEEEcCC-CceEEECCCCCEEEEEECCC---------CeEEEE
Confidence 11111 1123444442 455554443 334567777765 67799999998766654322 479999
Q ss_pred eCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEee
Q 001387 750 DDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTA 789 (1088)
Q Consensus 750 d~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~ 789 (1088)
|..+++.+..+... +.+.++ .+..+++ ++.|+..
T Consensus 300 d~~~~~~~~~~~~~--~~~~~~---~~s~dg~-~l~v~~~ 333 (353)
T 3vgz_A 300 DAKSYKVVKTFDTP--THPNSL---ALSADGK-TLYVSVK 333 (353)
T ss_dssp ETTTTEEEEEEECC--SEEEEE---EECTTSC-EEEEEEE
T ss_pred ECCCCeEEEEEecC--CCCCeE---EEcCCCC-EEEEEEc
Confidence 99999998887764 344444 3444344 4555443
No 111
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=96.31 E-value=1.7 Score=47.42 Aligned_cols=226 Identities=12% Similarity=0.134 Sum_probs=121.6
Q ss_pred CeEEEEEEcCCCCeEEEE-EeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCC---CceEEEEEECCCC-
Q 001387 691 GELTIGTIDDIQKLHIRS-IPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQ---TFEFISTYPLDTF- 765 (1088)
Q Consensus 691 ~~l~i~~l~~~~~~~~~~-i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~---t~~~i~~~~~~~~- 765 (1088)
+.+.+..++....-.... ...+..|..++++|+.+.++++.... ..+++++.. +.+.+..+.....
T Consensus 63 ~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~---------~~v~v~~~~~~g~~~~~~~~~~~~~~ 133 (347)
T 3hfq_A 63 GGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHK---------GTAEVMKIAADGALTLTDTVQHSGHG 133 (347)
T ss_dssp EEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTT---------TEEEEEEECTTSCEEEEEEEECCCCC
T ss_pred ceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCC---------CEEEEEEeCCCCCeeecceeecCCCC
Confidence 567777775432112333 33467899999999999877775322 457777653 3445555543221
Q ss_pred -------ceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEe-CCeEEEEEEEEe-cC-ceeEeccc-cCe
Q 001387 766 -------EYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE-DGKLQLIAEKET-KG-AVYSLNAF-NGK 834 (1088)
Q Consensus 766 -------E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~-~~kl~~~~~~~~-~g-~v~ai~~~-~g~ 834 (1088)
..+.+ +.+..+++ +++.+. ..+++.+|++. +++++.+..... .| .+..++-- +|+
T Consensus 134 p~~~~~~~~~~~---~~~spdg~-l~v~~~----------~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~ 199 (347)
T 3hfq_A 134 PRPEQDGSHIHY---TDLTPDNR-LAVIDL----------GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQ 199 (347)
T ss_dssp SSTTCSSCCEEE---EEECTTSC-EEEEET----------TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred CCccccCCCceE---EEECCCCc-EEEEeC----------CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCC
Confidence 12333 34555555 444322 34689999998 677776655443 22 44444422 454
Q ss_pred -EEEEE--CCEEEEEEeeeccCcccccccc-ccccc----ceEE--EEEEEeCCEEEEEec-cccEEEEEEeccCCeEEE
Q 001387 835 -LLAAI--NQKIQLYKWMLRDDGTRELQSE-CGHHG----HILA--LYVQTRGDFIVVGDL-MKSISLLIYKHEEGAIEE 903 (1088)
Q Consensus 835 -Lv~~~--g~~l~v~~~~~~~~~~~~L~~~-~~~~~----~~~~--~~l~~~~~~I~vgD~-~~Sv~~~~~~~~~~~l~~ 903 (1088)
|+++. ++.+.+|+++. +.+..+.... ..... ...+ +.++..|.++++++. ...+.++.++.. ..+..
T Consensus 200 ~l~v~~~~~~~v~v~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~-g~~~~ 277 (347)
T 3hfq_A 200 YAFLAGELSSQIASLKYDT-QTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD-GHLTL 277 (347)
T ss_dssp EEEEEETTTTEEEEEEEET-TTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG-GCEEE
T ss_pred EEEEEeCCCCEEEEEEecC-CCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC-CcEEE
Confidence 66653 46888888752 1232222111 11110 1123 333445678877776 456777666543 24444
Q ss_pred EeccCC-CceeEEEEEeeCce-EEEEcc-CCcEEEEeeCCC
Q 001387 904 RARDYN-ANWMSAVEILDDDI-YLGAEN-NFNLFTVRKNSE 941 (1088)
Q Consensus 904 ~~~D~~-~~~v~~~~~l~~~~-~l~~D~-~gnl~~l~~~~~ 941 (1088)
+..-.. ..++.++.+-.++. +++++. .+.+.+++.+.+
T Consensus 278 ~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~ 318 (347)
T 3hfq_A 278 IQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLT 318 (347)
T ss_dssp EEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred eEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCC
Confidence 443222 23344555544544 566665 488899988753
No 112
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=96.30 E-value=1.7 Score=47.43 Aligned_cols=270 Identities=13% Similarity=0.119 Sum_probs=132.2
Q ss_pred CEEEEEECCCeEEEEEEcCcE----E-EEEee-ccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceE
Q 001387 499 SQVLLATGGGHLVYLEIGDGI----L-TEVKH-AQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLIT 572 (1088)
Q Consensus 499 ~~lvv~~~~~~l~~~~~~~~~----l-~~~~~-~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~ 572 (1088)
..++-+..++.+.+.++..++ . ..... ..-...|.++++.+ ...+++.|.+ |+.+++|++.+.+.+.
T Consensus 40 ~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~------~~~~l~s~s~-D~~v~lwd~~~~~~~~ 112 (343)
T 2xzm_R 40 PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ------ENCFAISSSW-DKTLRLWDLRTGTTYK 112 (343)
T ss_dssp CEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS------STTEEEEEET-TSEEEEEETTSSCEEE
T ss_pred CEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECC------CCCEEEEEcC-CCcEEEEECCCCcEEE
Confidence 345555556777766664311 1 11111 12345689999865 2567788877 9999999998655443
Q ss_pred EecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCc---------eEE
Q 001387 573 KEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNT---------THV 643 (1088)
Q Consensus 573 ~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~---------~~v 643 (1088)
... .......++.+.+ +..+|+.|..||.+..|.+... .........--..++.-..+...+. ..+
T Consensus 113 ~~~-~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l 187 (343)
T 2xzm_R 113 RFV-GHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILGE--CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYF 187 (343)
T ss_dssp EEE-CCCSCEEEEEECS--STTEEEEEETTSCEEEEESSSC--EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEE
T ss_pred EEc-CCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccCC--ceeeeecccCCCceeeeeeeccccccccccCCCCCEE
Confidence 211 1112344554443 3467889999999999876421 0000000000011222222211110 122
Q ss_pred EEecCCceE-EEecCCcEEE-eecccccceeeeccCCCCCCCeEEEEe-CCeEEEEEEcCCCCeEEEEEeCCCccCeEEE
Q 001387 644 FAASDRPTV-IYSSNKKLLY-SNVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPLGEHPRRICH 720 (1088)
Q Consensus 644 ~~~~~~p~~-i~~~~~~~~~-~~l~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y 720 (1088)
...+..-.+ ++..+.+... ..-+...+.++ .|+. ....|+... ++.+++-.+.... ...+.+..+..+..+++
T Consensus 188 ~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~-~~s~--~g~~l~sgs~dg~v~iwd~~~~~-~~~~~~~~~~~v~~v~~ 263 (343)
T 2xzm_R 188 ASVGWDGRLKVWNTNFQIRYTFKAHESNVNHL-SISP--NGKYIATGGKDKKLLIWDILNLT-YPQREFDAGSTINQIAF 263 (343)
T ss_dssp EEEETTSEEEEEETTTEEEEEEECCSSCEEEE-EECT--TSSEEEEEETTCEEEEEESSCCS-SCSEEEECSSCEEEEEE
T ss_pred EEEcCCCEEEEEcCCCceeEEEcCccccceEE-EECC--CCCEEEEEcCCCeEEEEECCCCc-ccceeecCCCcEEEEEE
Confidence 222222222 2221222211 11111223222 2221 122344444 6778888774322 22344455677889999
Q ss_pred ecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCC------------CceEeEEEEEEEcCCCceEEEEEe
Q 001387 721 QEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDT------------FEYGCSILSCSFSDDSNVYYCVGT 788 (1088)
Q Consensus 721 ~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~------------~E~v~si~~~~~~~~~~~~i~VGT 788 (1088)
+|..+.++++. + ..+++.|..+.+......++. ...+.++ .+.. ..++++.|+
T Consensus 264 sp~~~~la~~~-d----------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~sp-~g~~l~sg~ 328 (343)
T 2xzm_R 264 NPKLQWVAVGT-D----------QGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSL---AWNA-LGKKLFAGF 328 (343)
T ss_dssp CSSSCEEEEEE-S----------SCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEE---EECS-SSCCEEEEE
T ss_pred CCCCCEEEEEC-C----------CCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEE---EECC-CCCeEEEec
Confidence 99877655442 2 248888876655433222321 1223333 3443 245677776
Q ss_pred eeeCCCCCCCcceEEEEEEEe
Q 001387 789 AYVLPEENEPTKGRILVFIVE 809 (1088)
Q Consensus 789 ~~~~~~e~~~~~Gri~v~~i~ 809 (1088)
..|.|.+|++.
T Consensus 329 ----------~Dg~v~~w~~~ 339 (343)
T 2xzm_R 329 ----------TDGVIRTFSFE 339 (343)
T ss_dssp ----------TTSEEEEEEEE
T ss_pred ----------CCceEEEEEEE
Confidence 34788888764
No 113
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=96.28 E-value=2.7 Score=49.46 Aligned_cols=326 Identities=13% Similarity=0.142 Sum_probs=168.5
Q ss_pred CcEEEEecCCcceeeeeeCCCCCcEEEEEEC--CCEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCC
Q 001387 467 GSVRLVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENP 544 (1088)
Q Consensus 467 ~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~ 544 (1088)
..|++++..+++.+..+.. |..+..++.+ +..++++..++.+..+.++..+...+...+....+..+++++...
T Consensus 159 ~~V~v~D~~t~~~~~~i~~--g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~-- 234 (543)
T 1nir_A 159 GQIALVDGDSKKIVKVIDT--GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKG-- 234 (543)
T ss_dssp TEEEEEETTTCCEEEEEEC--STTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTT--
T ss_pred CeEEEEECCCceEEEEEec--CcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcC--
Confidence 4577788776666666543 3334444454 568888877788888887311222333344556678888864210
Q ss_pred CCccEEEEEEecCCEEEEEECCCCCceEEecCCC----------CcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCC
Q 001387 545 SYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGG----------EIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKT 614 (1088)
Q Consensus 545 ~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~----------~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~ 614 (1088)
....+++++.+.++++.+|+..+++++..-.... +.-+.++.+.. .+...++....+|.+..+......
T Consensus 235 ~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~-~~~~~~vs~~~~g~i~vvd~~~~~ 313 (543)
T 1nir_A 235 YEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH-EHPEFIVNVKETGKVLLVNYKDID 313 (543)
T ss_dssp CTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS-SSSEEEEEETTTTEEEEEECTTSS
T ss_pred CCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECC-CCCEEEEEECCCCeEEEEEecCCC
Confidence 0156777877559999999988877765432211 01223443332 123344456678888877654321
Q ss_pred CccccceeeecCccceeEEEEEeCCceEEEEecC--Cce-EEEecCCcEEE-eeccccc-ceeeeccCCCCCCC-eEEEE
Q 001387 615 GELTDRKKVSLGTQPITLRTFSSKNTTHVFAASD--RPT-VIYSSNKKLLY-SNVNLKE-VSHMCPFNSAAFPD-SLAIA 688 (1088)
Q Consensus 615 ~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~--~p~-~i~~~~~~~~~-~~l~~~~-i~~~~~f~~~~~~~-~l~~~ 688 (1088)
.+. ...+..|..|..+ .|. .+...+++++. ... ++-...+++.. .++...+ ......|. .++ +-+++
T Consensus 314 -~l~-~~~i~~~~~~~~~-~~s-pdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~---~p~~g~~~~ 386 (543)
T 1nir_A 314 -NLT-VTSIGAAPFLHDG-GWD-SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFV---HPKYGPVWS 386 (543)
T ss_dssp -SCE-EEEEECCSSCCCE-EEC-TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEE---ETTTEEEEE
T ss_pred -cce-eEEeccCcCccCc-eEC-CCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccC---CCCCccEEE
Confidence 111 1123334444332 222 23344555432 222 22222344321 1211000 00001111 122 43343
Q ss_pred e----CCeEEEEEEcCCC----Ce-EEEEEeCC-CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEE-
Q 001387 689 K----EGELTIGTIDDIQ----KL-HIRSIPLG-EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFI- 757 (1088)
Q Consensus 689 ~----~~~l~i~~l~~~~----~~-~~~~i~l~-~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i- 757 (1088)
+ ++.+.+-.+++.. .| .+++++.. ..+..|.++|+.+.+.+...-+ .+.+....|.++|..+.+..
T Consensus 387 s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~---~~~~~~~~v~v~d~~~~~~~~ 463 (543)
T 1nir_A 387 TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFN---PDARISQSVAVFDLKNLDAKY 463 (543)
T ss_dssp EEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTC---SSHHHHTCEEEEETTCTTSCC
T ss_pred eccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCC---CCcccCceEEEEECCCCCCCe
Confidence 3 3677777776622 13 67888875 4668899999999888765211 11112357999999888765
Q ss_pred EEEECCC----CceEeEEEEEEEcCCCceEEE-EEeeeeCCCCCCCcceEEEEEEEeCCeEE
Q 001387 758 STYPLDT----FEYGCSILSCSFSDDSNVYYC-VGTAYVLPEENEPTKGRILVFIVEDGKLQ 814 (1088)
Q Consensus 758 ~~~~~~~----~E~v~si~~~~~~~~~~~~i~-VGT~~~~~~e~~~~~Gri~v~~i~~~kl~ 814 (1088)
..+.... .|..-.+....|..+++..++ ++.+. ...|.|.+|+...++++
T Consensus 464 ~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~-------~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 464 QVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGK-------NDSSALVVVDDKTLKLK 518 (543)
T ss_dssp EEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCT-------TSCCEEEEEETTTTEEE
T ss_pred EEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCC-------CCCCeEEEEECCCceEE
Confidence 3332210 121223334467665554332 22321 13579999876555544
No 114
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=96.23 E-value=0.5 Score=52.22 Aligned_cols=220 Identities=15% Similarity=0.178 Sum_probs=124.1
Q ss_pred eEEEEeCCeEEEEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECC
Q 001387 684 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD 763 (1088)
Q Consensus 684 ~l~~~~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~ 763 (1088)
.++...++++++..++.......+. .+ ....+.+.+..+.++++.... ..|++.|..+.+.+..+++.
T Consensus 33 ~la~g~~~~~~iw~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~d---------~~v~iWd~~~~~~~~~~~~~ 100 (355)
T 3vu4_A 33 CLILSTLKSFEIYNVHPVAHIMSQE--MR-HLSKVRMLHRTNYVAFVTGVK---------EVVHIWDDVKKQDVSRIKVD 100 (355)
T ss_dssp EEEEECSSEEEEEEETTEEEEEEEE--CS-CCCEEEECTTSSEEEEECSST---------TEEEEEETTTTEEEEEEECS
T ss_pred EEEEEcCCEEEEEecCCcceeeeee--cC-CeEEEEEcCCCCEEEEEECCc---------cEEEEEECCCCcEEEEEECC
Confidence 3555567777777766543222222 22 345566777777776654432 38999999999998888764
Q ss_pred CCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC-e-EEEEEEEEecCceeEeccccCeEEEEEC-
Q 001387 764 TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG-K-LQLIAEKETKGAVYSLNAFNGKLLAAIN- 840 (1088)
Q Consensus 764 ~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~-k-l~~~~~~~~~g~v~ai~~~~g~Lv~~~g- 840 (1088)
. .+.++. +. ...+++++ .|++++|++.+. + +..+.. +..+.++.. +.++++.|
T Consensus 101 ~--~v~~v~---~~---~~~~~~~~-----------~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~ 156 (355)
T 3vu4_A 101 A--PVKDLF---LS---REFIVVSY-----------GDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEF 156 (355)
T ss_dssp S--CEEEEE---EC---SSEEEEEE-----------TTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESS
T ss_pred C--ceEEEE---Ec---CCEEEEEE-----------cCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCC
Confidence 3 455543 33 33455543 257999998754 2 222211 233444443 56666523
Q ss_pred --CEEEEEEeeeccC---c-----ccc----cccccccccceEEEEEEEeCCEEEEEecccc-EEEEEEeccCCe-EEEE
Q 001387 841 --QKIQLYKWMLRDD---G-----TRE----LQSECGHHGHILALYVQTRGDFIVVGDLMKS-ISLLIYKHEEGA-IEER 904 (1088)
Q Consensus 841 --~~l~v~~~~~~~~---~-----~~~----L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~S-v~~~~~~~~~~~-l~~~ 904 (1088)
..|++|++..... . ... +.....+...+..+..+..+++++.|..-.. +.+ |+....+ +..+
T Consensus 157 ~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~i--wd~~~~~~~~~~ 234 (355)
T 3vu4_A 157 NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRV--FKTEDGVLVREF 234 (355)
T ss_dssp CTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEE--EETTTCCEEEEE
T ss_pred cCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEE--EECCCCcEEEEE
Confidence 5788877631100 0 000 1111112222333344445678888888877 766 5554443 3344
Q ss_pred eccCCCceeEEEEEeeCce-EEEEccCCcEEEEeeCCC
Q 001387 905 ARDYNANWMSAVEILDDDI-YLGAENNFNLFTVRKNSE 941 (1088)
Q Consensus 905 ~~D~~~~~v~~~~~l~~~~-~l~~D~~gnl~~l~~~~~ 941 (1088)
.+..+...+.++.|-.++. ++.+..+|.+.+++....
T Consensus 235 ~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 235 RRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp ECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 3233567788888876654 566778899999987643
No 115
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=96.22 E-value=1.8 Score=46.94 Aligned_cols=219 Identities=11% Similarity=0.136 Sum_probs=121.1
Q ss_pred CCeEEEEEEcCCCCeEEEEEeC---CCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCC-------ceEEEE
Q 001387 690 EGELTIGTIDDIQKLHIRSIPL---GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQT-------FEFIST 759 (1088)
Q Consensus 690 ~~~l~i~~l~~~~~~~~~~i~l---~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t-------~~~i~~ 759 (1088)
++.+++-.+.....-..+.+.. ....+.++++|+.+.++.++.+ ..|++.|..+ ++.+..
T Consensus 33 D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D----------~~v~iw~~~~~~~~~~~~~~~~~ 102 (330)
T 2hes_X 33 DRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD----------STVSIWAKEESADRTFEMDLLAI 102 (330)
T ss_dssp SSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT----------SCEEEEEC-------CCCEEEEE
T ss_pred CCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC----------CcEEEEEcccCcCccccceeEEE
Confidence 5667777665432222333322 2356789999998877766543 3577777632 233322
Q ss_pred EECCCC-ceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeC--CeEEEEEE-EEecCceeEeccc-cCe
Q 001387 760 YPLDTF-EYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVED--GKLQLIAE-KETKGAVYSLNAF-NGK 834 (1088)
Q Consensus 760 ~~~~~~-E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~--~kl~~~~~-~~~~g~v~ai~~~-~g~ 834 (1088)
+..+ ..+.++ .+.. ...+|+.|. ..|.|.+|++.. ...+.+.. ..+.++|++++-- ++.
T Consensus 103 --~~~h~~~V~~v---~~sp-~g~~las~s----------~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 166 (330)
T 2hes_X 103 --IEGHENEVKGV---AWSN-DGYYLATCS----------RDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA 166 (330)
T ss_dssp --EC----CEEEE---EECT-TSCEEEEEE----------TTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS
T ss_pred --EcCCCCcEEEE---EECC-CCCEEEEEe----------CCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC
Confidence 2222 224443 3443 345777765 347899999852 22333333 2467889988744 344
Q ss_pred EEEEE--CCEEEEEEeeeccCccccccc-ccccccceEEEEEEEe----CCEEEEEeccccEEEEEEeccCC------eE
Q 001387 835 LLAAI--NQKIQLYKWMLRDDGTRELQS-ECGHHGHILALYVQTR----GDFIVVGDLMKSISLLIYKHEEG------AI 901 (1088)
Q Consensus 835 Lv~~~--g~~l~v~~~~~~~~~~~~L~~-~~~~~~~~~~~~l~~~----~~~I~vgD~~~Sv~~~~~~~~~~------~l 901 (1088)
++++. ..+|++++.. . +..+... ...+... +.++... +.+++.|..-..+.++.+..... ..
T Consensus 167 ~l~s~s~D~~i~iW~~~--~-~~~~~~~~~~~h~~~--v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 241 (330)
T 2hes_X 167 LLASSSYDDTVRIWKDY--D-DDWECVAVLNGHEGT--VWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVC 241 (330)
T ss_dssp EEEEEETTSCEEEEEEE--T-TEEEEEEEECCCSSC--EEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEE
T ss_pred EEEEEcCCCeEEEEECC--C-CCeeEEEEccCCCCc--EEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEE
Confidence 44433 3678887753 1 1111111 1112222 3334333 34778888888888876654211 11
Q ss_pred EEEeccCCCceeEEEEEeeCceEEEEccCCcEEEEeeC
Q 001387 902 EERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKN 939 (1088)
Q Consensus 902 ~~~~~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~ 939 (1088)
...-...+..++.++.+-+++.++.+..+|.+.+++..
T Consensus 242 ~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~ 279 (330)
T 2hes_X 242 EAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEV 279 (330)
T ss_dssp EEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEE
T ss_pred eeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcC
Confidence 12222335667888888766677888889999999864
No 116
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=96.21 E-value=1.8 Score=46.74 Aligned_cols=277 Identities=14% Similarity=0.104 Sum_probs=139.3
Q ss_pred CceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceE---EecCC-CCcCceeEEeeeecCceEEEEEeCCCc
Q 001387 529 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLIT---KEHLG-GEIIPRSVLLCAFEGISYLLCALGDGH 604 (1088)
Q Consensus 529 ~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~---~~~l~-~~~~p~si~~~~~~~~~~L~vgl~~G~ 604 (1088)
...|.++++.+- ...+++.|.+ |+.+++|++....... ...+. ......++.+. .+..+|+.|..||.
T Consensus 17 ~~~V~~l~~~~~-----~~~~l~s~s~-D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s--~dg~~l~s~s~D~~ 88 (319)
T 3frx_A 17 NGWVTSLATSAG-----QPNLLLSASR-DKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLT--ADGAYALSASWDKT 88 (319)
T ss_dssp SSCEEEEEECSS-----CTTEEEEEET-TSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEEC--TTSSEEEEEETTSE
T ss_pred cceEEEEEccCC-----CccEEEEecC-CccEEEecCCCCCccccccceEEeCCcccEEEEEEC--CCCCEEEEEeCCCE
Confidence 467899998641 2467888877 9999999985321111 11111 11233344333 24578899999999
Q ss_pred EEEEEEecCCCccccceeeecC-ccceeEEEEEeCCceEEEEec-CCceEEEecCCc-EEEeecccccceeeeccCCCC-
Q 001387 605 LLNFLLNMKTGELTDRKKVSLG-TQPITLRTFSSKNTTHVFAAS-DRPTVIYSSNKK-LLYSNVNLKEVSHMCPFNSAA- 680 (1088)
Q Consensus 605 l~~y~~~~~~~~l~~~~~~~lG-~~pv~l~~~~~~~~~~v~~~~-~~p~~i~~~~~~-~~~~~l~~~~i~~~~~f~~~~- 680 (1088)
+..|.+.. ++. .+. ..| ..+|.=..+. .+...++..+ |....++.-+++ +....-+...+..+.-.....
T Consensus 89 v~~wd~~~--~~~--~~~-~~~h~~~v~~~~~~-~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 89 LRLWDVAT--GET--YQR-FVGHKSDVMSVDID-KKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162 (319)
T ss_dssp EEEEETTT--TEE--EEE-EECCSSCEEEEEEC-TTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC---
T ss_pred EEEEECCC--CCe--eEE-EccCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCC
Confidence 99887643 211 111 112 2233222221 1122222222 223333322222 111111112233322211111
Q ss_pred CCC--eEEEEe-CCeEEEEEEcCCCCeEEEEE-eCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceE
Q 001387 681 FPD--SLAIAK-EGELTIGTIDDIQKLHIRSI-PLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEF 756 (1088)
Q Consensus 681 ~~~--~l~~~~-~~~l~i~~l~~~~~~~~~~i-~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~ 756 (1088)
.++ .++... ++.+++-.+.... ....+ .-......++++|+.+.++.++.+ ..|++.|..+.+.
T Consensus 163 ~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d----------g~i~iwd~~~~~~ 230 (319)
T 3frx_A 163 DDDSVTIISAGNDKMVKAWNLNQFQ--IEADFIGHNSNINTLTASPDGTLIASAGKD----------GEIMLWNLAAKKA 230 (319)
T ss_dssp ---CCEEEEEETTSCEEEEETTTTE--EEEEECCCCSCEEEEEECTTSSEEEEEETT----------CEEEEEETTTTEE
T ss_pred CCCccEEEEEeCCCEEEEEECCcch--hheeecCCCCcEEEEEEcCCCCEEEEEeCC----------CeEEEEECCCCcE
Confidence 112 233333 6777777765432 12222 223456788999988877766543 5799999999888
Q ss_pred EEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEE-------EecCceeEec
Q 001387 757 ISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEK-------ETKGAVYSLN 829 (1088)
Q Consensus 757 i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~-------~~~g~v~ai~ 829 (1088)
+..+.. .+.+.++ .+.. ...+++.|+. +.+.+|.+....+...... ..++.+.+++
T Consensus 231 ~~~~~~--~~~v~~~---~~sp-~~~~la~~~~-----------~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 293 (319)
T 3frx_A 231 MYTLSA--QDEVFSL---AFSP-NRYWLAAATA-----------TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLA 293 (319)
T ss_dssp EEEEEC--CSCEEEE---EECS-SSSEEEEEET-----------TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEE
T ss_pred EEEecC--CCcEEEE---EEcC-CCCEEEEEcC-----------CCcEEEEeCcCeeeeccCccccccccCcCcceeEEE
Confidence 877664 3445554 3443 3466776652 2377887765433221111 1245666766
Q ss_pred cc-cCe-EEEEE-CCEEEEEEe
Q 001387 830 AF-NGK-LLAAI-NQKIQLYKW 848 (1088)
Q Consensus 830 ~~-~g~-Lv~~~-g~~l~v~~~ 848 (1088)
-- +|+ |+++. .+.|++|++
T Consensus 294 ~spdg~~l~sg~~Dg~i~vWd~ 315 (319)
T 3frx_A 294 WSADGQTLFAGYTDNVIRVWQV 315 (319)
T ss_dssp ECTTSSEEEEEETTSCEEEEEE
T ss_pred ECCCCCEEEEeecCceEEEEEE
Confidence 33 444 44443 367888775
No 117
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=96.18 E-value=0.36 Score=53.55 Aligned_cols=183 Identities=12% Similarity=-0.001 Sum_probs=92.5
Q ss_pred eEEEEe-CCeEEEEEEcCCCCe-EEEE-EeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCce---EE
Q 001387 684 SLAIAK-EGELTIGTIDDIQKL-HIRS-IPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFE---FI 757 (1088)
Q Consensus 684 ~l~~~~-~~~l~i~~l~~~~~~-~~~~-i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~---~i 757 (1088)
.++... ++.+++-.+.....+ .... ..-...+..+.++|+.+.++.++.+ ..|++.|..+.+ .+
T Consensus 69 ~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------~~i~iwd~~~~~~~~~~ 138 (377)
T 3dwl_C 69 RIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGA----------RVISVCYFEQENDWWVS 138 (377)
T ss_dssp CEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESS----------SCEEECCC-----CCCC
T ss_pred EEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecC----------CeEEEEEECCcccceee
Confidence 455544 677888777664411 1122 2234567788999988877776543 357777765544 23
Q ss_pred EEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC----------------eEEEEEEEEe
Q 001387 758 STYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG----------------KLQLIAEKET 821 (1088)
Q Consensus 758 ~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~----------------kl~~~~~~~~ 821 (1088)
..+.-.....+.+++ +.. ...+++.|+ ..|.|.+|++... .-+.+.....
T Consensus 139 ~~~~~~h~~~v~~~~---~~~-~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (377)
T 3dwl_C 139 KHLKRPLRSTILSLD---WHP-NNVLLAAGC----------ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPS 204 (377)
T ss_dssp EEECSSCCSCEEEEE---ECT-TSSEEEEEE----------SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCC
T ss_pred eEeecccCCCeEEEE---EcC-CCCEEEEEe----------CCCEEEEEEEEecccCCCccccccccccchhhhhhcccC
Confidence 333322344555554 333 346788776 2378999998511 1333444467
Q ss_pred cCceeEeccc-cC-eEEEEE-CCEEEEEEeeeccCccc--c-cccccccccceEEEEEEEeCCEEEEEeccccEEEEEE
Q 001387 822 KGAVYSLNAF-NG-KLLAAI-NQKIQLYKWMLRDDGTR--E-LQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIY 894 (1088)
Q Consensus 822 ~g~v~ai~~~-~g-~Lv~~~-g~~l~v~~~~~~~~~~~--~-L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~ 894 (1088)
.++|++++-- +| +|+.+. .+.|++|++. .+.. + +.........+..+.....+.+++.|. .+++.++..
T Consensus 205 ~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~~~~~ 279 (377)
T 3dwl_C 205 GGWVHAVGFSPSGNALAYAGHDSSVTIAYPS---APEQPPRALITVKLSQLPLRSLLWANESAIVAAGY-NYSPILLQG 279 (377)
T ss_dssp SSSEEEEEECTTSSCEEEEETTTEEC-CEEC---STTSCEEECCCEECSSSCEEEEEEEETTEEEEEES-SSSEEEECC
T ss_pred CceEEEEEECCCCCEEEEEeCCCcEEEEECC---CCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEc-CCcEEEEEe
Confidence 8889988754 34 455443 3688887763 2211 0 211122222233333344455666664 555555443
No 118
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.25 Score=61.15 Aligned_cols=231 Identities=12% Similarity=0.073 Sum_probs=131.2
Q ss_pred eEEEEe-CCeEEEEEEcCCCCeEEEEEeC-CCccCeEEEecC--CCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEE
Q 001387 684 SLAIAK-EGELTIGTIDDIQKLHIRSIPL-GEHPRRICHQEQ--SRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIST 759 (1088)
Q Consensus 684 ~l~~~~-~~~l~i~~l~~~~~~~~~~i~l-~~tp~~i~y~~~--~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~ 759 (1088)
.++... ++.+++-.+.....-..+.+.- ...+..+.+++. .+.++.++.+ +.|++.|..+.+....
T Consensus 23 ~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D----------g~I~vwd~~~~~~~~~ 92 (753)
T 3jro_A 23 RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD----------GKVLIWKEENGRWSQI 92 (753)
T ss_dssp CEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT----------SCEEEEEEETTEEEEE
T ss_pred eEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC----------CeEEEEECCCCccccc
Confidence 344443 6778888877443333444432 345677888776 5666655533 4688888766653322
Q ss_pred EECC-CCceEeEEEEEEEcCCC-ceEEEEEeeeeCCCCCCCcceEEEEEEEeCCe-EEEEEEEEecCceeEecccc----
Q 001387 760 YPLD-TFEYGCSILSCSFSDDS-NVYYCVGTAYVLPEENEPTKGRILVFIVEDGK-LQLIAEKETKGAVYSLNAFN---- 832 (1088)
Q Consensus 760 ~~~~-~~E~v~si~~~~~~~~~-~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~k-l~~~~~~~~~g~v~ai~~~~---- 832 (1088)
..+. ....+.++. +..+. ..++++|+ ..|.|.+|++...+ ..........++|++++-..
T Consensus 93 ~~~~~h~~~V~~v~---~sp~~~~~~l~sgs----------~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 93 AVHAVHSASVNSVQ---WAPHEYGPLLLVAS----------SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 159 (753)
T ss_dssp EEECCCSSCEEEEE---ECCGGGCSEEEEEE----------TTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--
T ss_pred ccccCCCCCeEEEE---ECCCCCCCEEEEEe----------CCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccc
Confidence 3333 233455543 33321 56788776 35899999998542 22233345678888887543
Q ss_pred ----------C-eEEEEE-CCEEEEEEeeeccCccccccc-ccccccceEEEEEEE--e---CCEEEEEeccccEEEEEE
Q 001387 833 ----------G-KLLAAI-NQKIQLYKWMLRDDGTRELQS-ECGHHGHILALYVQT--R---GDFIVVGDLMKSISLLIY 894 (1088)
Q Consensus 833 ----------g-~Lv~~~-g~~l~v~~~~~~~~~~~~L~~-~~~~~~~~~~~~l~~--~---~~~I~vgD~~~Sv~~~~~ 894 (1088)
+ .++++. .+.|++|++.... ...++.. ...+.. .+.++.. . +++++.|+.-..+.++..
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~~~~h~~--~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~ 236 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDA-QTYVLESTLEGHSD--WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 236 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTT-TEEEEEEEECCCSS--CEEEEEECCCCSSSEEEEEEESSSCEEEEEE
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCc-ccceeeeeecCCCC--cEEEEEeccCCCCCCEEEEEecCCEEEEecC
Confidence 3 455444 3678888764111 1111111 111122 2344444 3 668888988888887665
Q ss_pred eccCCe--EEEEeccCCCceeEEEEEeeCc-eEEEEccCCcEEEEeeCC
Q 001387 895 KHEEGA--IEERARDYNANWMSAVEILDDD-IYLGAENNFNLFTVRKNS 940 (1088)
Q Consensus 895 ~~~~~~--l~~~~~D~~~~~v~~~~~l~~~-~~l~~D~~gnl~~l~~~~ 940 (1088)
+..... ............++++.+-.++ .++.+..+|.+.+++...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 543211 1122223345566777776554 467778899999998774
No 119
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=96.12 E-value=0.51 Score=50.56 Aligned_cols=198 Identities=13% Similarity=0.170 Sum_probs=112.5
Q ss_pred ccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCC--ceEEEEEECCCC-ceEeEEEEEEEcCC-CceEEEEEee
Q 001387 714 HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQT--FEFISTYPLDTF-EYGCSILSCSFSDD-SNVYYCVGTA 789 (1088)
Q Consensus 714 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t--~~~i~~~~~~~~-E~v~si~~~~~~~~-~~~~i~VGT~ 789 (1088)
..+.++++|+.+.++.++.+ ..|++.|..+ .+.+..+ ..+ ..+.+++ +... ...+++.|.
T Consensus 11 ~V~~~~~s~~g~~las~s~D----------~~v~iw~~~~~~~~~~~~l--~gH~~~V~~v~---~s~~~~g~~l~s~s- 74 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCSSD----------KTIKIFEVEGETHKLIDTL--TGHEGPVWRVD---WAHPKFGTILASCS- 74 (297)
T ss_dssp CEEEEEECTTSSEEEEEETT----------SCEEEEEBCSSCBCCCEEE--CCCSSCEEEEE---ECCGGGCSEEEEEE-
T ss_pred ceEEEEECCCCCEEEEEeCC----------CEEEEEecCCCCcEEEEEE--ccccCCeEEEE---ecCCCcCCEEEEEc-
Confidence 45678889888877766543 4688888643 3333333 332 2344443 3321 245777665
Q ss_pred eeCCCCCCCcceEEEEEEEeCCeEEEEEEE-EecCceeEecccc---Ce-EEEE-ECCEEEEEEeeeccCcccccccccc
Q 001387 790 YVLPEENEPTKGRILVFIVEDGKLQLIAEK-ETKGAVYSLNAFN---GK-LLAA-INQKIQLYKWMLRDDGTRELQSECG 863 (1088)
Q Consensus 790 ~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~-~~~g~v~ai~~~~---g~-Lv~~-~g~~l~v~~~~~~~~~~~~L~~~~~ 863 (1088)
.-|.|.+|++..++.+.+... ...++|.+++-.. |. |+++ ..++++++++. +...........
T Consensus 75 ---------~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~--~~~~~~~~~~~~ 143 (297)
T 2pm7_B 75 ---------YDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFK--ENGTTSPIIIDA 143 (297)
T ss_dssp ---------TTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBC--SSSCBCCEEEEC
T ss_pred ---------CCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEec--CCCceeeeeeec
Confidence 347899999876544333332 3577898887542 44 4433 34788888763 111111111111
Q ss_pred cccceEEEEEEEe---------------CCEEEEEeccccEEEEEEeccCCeEEEEe-ccCCCceeEEEEEeeC----ce
Q 001387 864 HHGHILALYVQTR---------------GDFIVVGDLMKSISLLIYKHEEGAIEERA-RDYNANWMSAVEILDD----DI 923 (1088)
Q Consensus 864 ~~~~~~~~~l~~~---------------~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~-~D~~~~~v~~~~~l~~----~~ 923 (1088)
+... +.++... +++++.|..-..+.++.++.......... -..+..+|.++.|-.+ ..
T Consensus 144 h~~~--v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~ 221 (297)
T 2pm7_B 144 HAIG--VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY 221 (297)
T ss_dssp CSSC--EEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEE
T ss_pred ccCc--cceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceE
Confidence 1111 2223222 35888898888898877665433222221 1235567888887654 34
Q ss_pred EEEEccCCcEEEEeeCC
Q 001387 924 YLGAENNFNLFTVRKNS 940 (1088)
Q Consensus 924 ~l~~D~~gnl~~l~~~~ 940 (1088)
++.+..+|.+.++..+.
T Consensus 222 las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 222 MASVSQDRTCIIWTQDN 238 (297)
T ss_dssp EEEEETTSCEEEEEESS
T ss_pred EEEEECCCcEEEEEeCC
Confidence 66788899999998764
No 120
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=95.92 E-value=1.9 Score=45.62 Aligned_cols=224 Identities=13% Similarity=0.056 Sum_probs=116.4
Q ss_pred CCeEEEEeCCeEEEEEEcCCCCeEEEEEeCCC--ccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEE
Q 001387 682 PDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE--HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIST 759 (1088)
Q Consensus 682 ~~~l~~~~~~~l~i~~l~~~~~~~~~~i~l~~--tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~ 759 (1088)
|+.++++..+.=.+.-++....-...+++.+. .++.+...|+.+.++ +.. ..+..+|+ +++.+.+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~----------~~V~~~d~-~G~~~W~ 70 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYS----------KGAKMITR-DGRELWN 70 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECB----------SEEEEECT-TSCEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCC----------CCEEEECC-CCCEEEE
Confidence 55666665333333344554444566777764 688899999988776 322 35899999 8999999
Q ss_pred EECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEE--ecC---ceeEeccc-cC
Q 001387 760 YPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKE--TKG---AVYSLNAF-NG 833 (1088)
Q Consensus 760 ~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~--~~g---~v~ai~~~-~g 833 (1088)
++......+.++ .+..+ ..+++.... ..++++.++. ++++.-..... ..+ ++..+... +|
T Consensus 71 ~~~~~~~~~~~~---~~~~d-G~~lv~~~~---------~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G 136 (276)
T 3no2_A 71 IAAPAGCEMQTA---RILPD-GNALVAWCG---------HPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKG 136 (276)
T ss_dssp EECCTTCEEEEE---EECTT-SCEEEEEES---------TTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTS
T ss_pred EcCCCCcccccc---EECCC-CCEEEEecC---------CCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCC
Confidence 887643344333 23332 344554432 1468877754 33322111111 112 22222222 56
Q ss_pred eEEEEEC--CEEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEEEEeccccEEEEEEeccCCe-EEEEec-cCC
Q 001387 834 KLLAAIN--QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGA-IEERAR-DYN 909 (1088)
Q Consensus 834 ~Lv~~~g--~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~-l~~~~~-D~~ 909 (1088)
.++++.. .+|+.++. +|+....-.. ...++.+.....++. ++++...+ .++.|+++.++ +-.+.+ +..
T Consensus 137 ~~lv~~~~~~~v~~~d~----~G~~~w~~~~--~~~~~~~~~~~~g~~-~v~~~~~~-~v~~~d~~tG~~~w~~~~~~~~ 208 (276)
T 3no2_A 137 NYLVPLFATSEVREIAP----NGQLLNSVKL--SGTPFSSAFLDNGDC-LVACGDAH-CFVQLNLESNRIVRRVNANDIE 208 (276)
T ss_dssp CEEEEETTTTEEEEECT----TSCEEEEEEC--SSCCCEEEECTTSCE-EEECBTTS-EEEEECTTTCCEEEEEEGGGSB
T ss_pred CEEEEecCCCEEEEECC----CCCEEEEEEC--CCCccceeEcCCCCE-EEEeCCCC-eEEEEeCcCCcEEEEecCCCCC
Confidence 6665543 55655442 2433221111 112222322233454 45555444 35678887444 444443 211
Q ss_pred ---CceeEEEEEeeCceEEEEccCC---------cEEEEeeCC
Q 001387 910 ---ANWMSAVEILDDDIYLGAENNF---------NLFTVRKNS 940 (1088)
Q Consensus 910 ---~~~v~~~~~l~~~~~l~~D~~g---------nl~~l~~~~ 940 (1088)
-.+++++..+.++.+++++..| +..+++.++
T Consensus 209 ~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~ 251 (276)
T 3no2_A 209 GVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDS 251 (276)
T ss_dssp SCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECT
T ss_pred CccccccccceEcCCCCEEEEeccCccccccccCCceEEEECC
Confidence 2456777777777777777544 335666654
No 121
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=95.90 E-value=2.7 Score=46.16 Aligned_cols=214 Identities=10% Similarity=0.113 Sum_probs=121.3
Q ss_pred CCeEEEEEEcCCCC----eEEEEEeC-CCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCC
Q 001387 690 EGELTIGTIDDIQK----LHIRSIPL-GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDT 764 (1088)
Q Consensus 690 ~~~l~i~~l~~~~~----~~~~~i~l-~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~ 764 (1088)
++.+.+..+..... -..+.+.. ......+.++|..+.++.++.+ ..+++.|..+.+.+..+.-..
T Consensus 127 d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D----------~~v~lwd~~~~~~~~~~~~h~ 196 (354)
T 2pbi_B 127 DNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGD----------GTCALWDVESGQLLQSFHGHG 196 (354)
T ss_dssp TSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETT----------SEEEEEETTTCCEEEEEECCS
T ss_pred CCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCC----------CcEEEEeCCCCeEEEEEcCCC
Confidence 66777777653310 11122221 2345567788877766655433 579999999888877665332
Q ss_pred CceEeEEEEEEEcC-CCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cCe-EEEEE-C
Q 001387 765 FEYGCSILSCSFSD-DSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGK-LLAAI-N 840 (1088)
Q Consensus 765 ~E~v~si~~~~~~~-~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g~-Lv~~~-g 840 (1088)
..+.++. +.. ....+++.|+ ..|.+.+|++..++..... ....++|++++-. ++. |+.+. .
T Consensus 197 -~~v~~~~---~~~~~~g~~l~sgs----------~Dg~v~~wd~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D 261 (354)
T 2pbi_B 197 -ADVLCLD---LAPSETGNTFVSGG----------CDKKAMVWDMRSGQCVQAF-ETHESDVNSVRYYPSGDAFASGSDD 261 (354)
T ss_dssp -SCEEEEE---ECCCSSCCEEEEEE----------TTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred -CCeEEEE---EEeCCCCCEEEEEe----------CCCeEEEEECCCCcEEEEe-cCCCCCeEEEEEeCCCCEEEEEeCC
Confidence 2344443 222 2346777775 3478999998765532221 2457889988855 344 44333 3
Q ss_pred CEEEEEEeeeccCcccccccccccc--cceEEEEEEEeCCEEEEEeccccEEEEEEeccCC-eEEEEeccCCCceeEEEE
Q 001387 841 QKIQLYKWMLRDDGTRELQSECGHH--GHILALYVQTRGDFIVVGDLMKSISLLIYKHEEG-AIEERARDYNANWMSAVE 917 (1088)
Q Consensus 841 ~~l~v~~~~~~~~~~~~L~~~~~~~--~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~-~l~~~~~D~~~~~v~~~~ 917 (1088)
.++++|++. . + +.+....... .....+.....+.++++|..-..+.++ +.... .+..+. .+..+++++.
T Consensus 262 ~~v~lwd~~--~-~-~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vw--d~~~~~~~~~l~--~h~~~v~~l~ 333 (354)
T 2pbi_B 262 ATCRLYDLR--A-D-REVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVW--DVLKGSRVSILF--GHENRVSTLR 333 (354)
T ss_dssp SCEEEEETT--T-T-EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEE--ETTTCSEEEEEC--CCSSCEEEEE
T ss_pred CeEEEEECC--C-C-cEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEE--ECCCCceEEEEE--CCCCcEEEEE
Confidence 678887752 1 1 1111111001 111223333457789999888887764 54333 333332 3456788888
Q ss_pred EeeCc-eEEEEccCCcEEEE
Q 001387 918 ILDDD-IYLGAENNFNLFTV 936 (1088)
Q Consensus 918 ~l~~~-~~l~~D~~gnl~~l 936 (1088)
+-.++ .++.++.+|.+.++
T Consensus 334 ~spdg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 334 VSPDGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp ECTTSSCEEEEETTSEEEEE
T ss_pred ECCCCCEEEEEcCCCCEEec
Confidence 76665 46778889988875
No 122
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=95.85 E-value=2.6 Score=45.56 Aligned_cols=63 Identities=10% Similarity=0.140 Sum_probs=45.6
Q ss_pred CCeEEEEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCC
Q 001387 690 EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDT 764 (1088)
Q Consensus 690 ~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~ 764 (1088)
.+.+.+..+.. .-..+.++.+..|..++++|+.+.+++.. . ...|.++|..+++.+..++++.
T Consensus 274 ~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~---------~~~v~v~d~~~~~~~~~~~~~~ 336 (349)
T 1jmx_B 274 LNRLAKYDLKQ--RKLIKAANLDHTYYCVAFDKKGDKLYLGG-T---------FNDLAVFNPDTLEKVKNIKLPG 336 (349)
T ss_dssp ESEEEEEETTT--TEEEEEEECSSCCCEEEECSSSSCEEEES-B---------SSEEEEEETTTTEEEEEEECSS
T ss_pred cCeEEEEECcc--CeEEEEEcCCCCccceEECCCCCEEEEec-C---------CCeEEEEeccccceeeeeecCC
Confidence 55555544433 34567788888999999999887766642 1 2579999999999988888763
No 123
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=95.82 E-value=0.43 Score=54.41 Aligned_cols=256 Identities=11% Similarity=0.075 Sum_probs=136.7
Q ss_pred EEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCC----------ceEEEEEECCCCceEeEEEEEE
Q 001387 706 IRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQT----------FEFISTYPLDTFEYGCSILSCS 775 (1088)
Q Consensus 706 ~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t----------~~~i~~~~~~~~E~v~si~~~~ 775 (1088)
.+.++-...+.++.++|....+++..... +.|+++|..+ .+.+..+.-.. ..+.+++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~d---------g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~--- 188 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPS---------SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQ-KEGYGLS--- 188 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSS---------SCEEEEEGGGSCSSCCTTCCCCCSEEEECCS-SCCCCEE---
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCC---------CcEEEEECCCcccccCccccCCCcEEecCCC-CCeEEEE---
Confidence 45566678899999999744343333322 4578887644 34444443222 2344443
Q ss_pred EcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC-----eEEEEEE-EEecCceeEeccc--cCeEEEEE--CCEEEE
Q 001387 776 FSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG-----KLQLIAE-KETKGAVYSLNAF--NGKLLAAI--NQKIQL 845 (1088)
Q Consensus 776 ~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~-----kl~~~~~-~~~~g~v~ai~~~--~g~Lv~~~--g~~l~v 845 (1088)
+...+..+++.|. ..|.|.+|++... .+..... ....++|.+++-. ++.++++. ..+|++
T Consensus 189 ~~~~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i 258 (430)
T 2xyi_A 189 WNPNLNGYLLSAS----------DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMI 258 (430)
T ss_dssp ECTTSTTEEEEEC----------TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred eCCCCCCeEEEEe----------CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEE
Confidence 3333344787775 4588999998742 1222222 2467789888754 34555443 478888
Q ss_pred EEeeeccCcc-cccccccccccceEEEEEEEe--CC-EEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeC
Q 001387 846 YKWMLRDDGT-RELQSECGHHGHILALYVQTR--GD-FIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDD 921 (1088)
Q Consensus 846 ~~~~~~~~~~-~~L~~~~~~~~~~~~~~l~~~--~~-~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~ 921 (1088)
|++. .... +.+........ .+.++... +. ++++|..-..|.++.++.....+..+. .+...++++.+-.+
T Consensus 259 ~d~~--~~~~~~~~~~~~~~~~--~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~--~h~~~v~~i~~sp~ 332 (430)
T 2xyi_A 259 WDTR--NNNTSKPSHTVDAHTA--EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE--SHKDEIFQVQWSPH 332 (430)
T ss_dssp EETT--CSCSSSCSEEEECCSS--CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE--CCSSCEEEEEECSS
T ss_pred EECC--CCCCCcceeEeecCCC--CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee--cCCCCEEEEEECCC
Confidence 7753 1110 11111111122 23444443 44 677888888887765543222233332 24557788887765
Q ss_pred c-e-EEEEccCCcEEEEeeCCCCCCc--c--cccceeEEEEEE-cCCccceEEeeeeeecCCCCCCCCccEEEEEccccc
Q 001387 922 D-I-YLGAENNFNLFTVRKNSEGATD--E--ERGRLEVVGEYH-LGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGV 994 (1088)
Q Consensus 922 ~-~-~l~~D~~gnl~~l~~~~~~~~~--~--~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~~l~~t~~G~ 994 (1088)
+ . ++.+..+|.+.++......... . ..........+. .+..|+.+.- . | .....++.++.+|.
T Consensus 333 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~---~---p----~~~~~l~s~s~dg~ 402 (430)
T 2xyi_A 333 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW---N---P----NEPWIICSVSEDNI 402 (430)
T ss_dssp CTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEE---C---S----SSTTEEEEEETTSE
T ss_pred CCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEE---C---C----CCCCEEEEEECCCC
Confidence 5 3 6677789999999986522110 0 000011222221 1234555432 1 1 12236777888998
Q ss_pred EEEEEe
Q 001387 995 IGVIAS 1000 (1088)
Q Consensus 995 i~~l~~ 1000 (1088)
|..+..
T Consensus 403 i~iw~~ 408 (430)
T 2xyi_A 403 MQVWQM 408 (430)
T ss_dssp EEEEEE
T ss_pred EEEeEc
Confidence 886655
No 124
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=95.81 E-value=0.8 Score=52.00 Aligned_cols=197 Identities=11% Similarity=0.058 Sum_probs=109.1
Q ss_pred CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCce-----------EEEEEECCC-----------CceEeE
Q 001387 713 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFE-----------FISTYPLDT-----------FEYGCS 770 (1088)
Q Consensus 713 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~-----------~i~~~~~~~-----------~E~v~s 770 (1088)
+.+..+.++|+.+.++.++.+ +.|++.|..+.+ .+..+.-.. .+.+.+
T Consensus 29 ~~V~~v~~s~~g~~la~g~~d----------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~ 98 (447)
T 3dw8_B 29 DIISTVEFNHSGELLATGDKG----------GRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINK 98 (447)
T ss_dssp GSEEEEEECSSSSEEEEEETT----------SEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCE
T ss_pred CcEEEEEECCCCCEEEEEcCC----------CeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEE
Confidence 456788899988887776543 467888765544 333333111 144555
Q ss_pred EEEEEEcCCC-ceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEE-----------------------------------
Q 001387 771 ILSCSFSDDS-NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQ----------------------------------- 814 (1088)
Q Consensus 771 i~~~~~~~~~-~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~----------------------------------- 814 (1088)
++. ..++ ..+++.|+ ..|.|.+|++..++.+
T Consensus 99 l~~---~~~~~~~~l~s~s----------~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 165 (447)
T 3dw8_B 99 IRW---LPQKNAAQFLLST----------NDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVE 165 (447)
T ss_dssp EEE---CCCCSSSEEEEEE----------CSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEE
T ss_pred EEE---cCCCCcceEEEeC----------CCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeee
Confidence 543 3322 26777775 2468888888643221
Q ss_pred ----EEEEEEecCceeEeccc-cC-eEEEEECCEEEEEEeeeccCcccccc-------cccccccceEEEEEEE--eC-C
Q 001387 815 ----LIAEKETKGAVYSLNAF-NG-KLLAAINQKIQLYKWMLRDDGTRELQ-------SECGHHGHILALYVQT--RG-D 878 (1088)
Q Consensus 815 ----~~~~~~~~g~v~ai~~~-~g-~Lv~~~g~~l~v~~~~~~~~~~~~L~-------~~~~~~~~~~~~~l~~--~~-~ 878 (1088)
......+.++|++++-- ++ .|+.+....|++|++.. +.+.+. ....+.. .+.++.. .+ +
T Consensus 166 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~ 240 (447)
T 3dw8_B 166 ASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEI---TDRSFNIVDIKPANMEELTE--VITAAEFHPNSCN 240 (447)
T ss_dssp EEEEEEECSCCSSCCCEEEECTTSSEEEEECSSEEEEEETTE---EEEEEEEEECCCSSGGGCCC--CEEEEEECSSCTT
T ss_pred ccceEEeccCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCC---CCceeeeeecccccccccCc--ceEEEEECCCCCc
Confidence 01122467788888754 33 56666667888887631 111111 0111112 2344443 45 7
Q ss_pred EEEEEeccccEEEEEEeccCCe-----EEEEeccCCC----------ceeEEEEEeeCce-EEEEccCCcEEEEeeCC
Q 001387 879 FIVVGDLMKSISLLIYKHEEGA-----IEERARDYNA----------NWMSAVEILDDDI-YLGAENNFNLFTVRKNS 940 (1088)
Q Consensus 879 ~I~vgD~~~Sv~~~~~~~~~~~-----l~~~~~D~~~----------~~v~~~~~l~~~~-~l~~D~~gnl~~l~~~~ 940 (1088)
+++.|..-..+.++ +....+ +..+.....+ ..++++.+-.++. +++++. |.+.+++...
T Consensus 241 ~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~ 315 (447)
T 3dw8_B 241 TFVYSSSKGTIRLC--DMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM 315 (447)
T ss_dssp EEEEEETTSCEEEE--ETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC
T ss_pred EEEEEeCCCeEEEE--ECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC
Confidence 89999988888765 433322 2222222111 1677888776655 455556 9999998753
No 125
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=95.80 E-value=3.1 Score=46.12 Aligned_cols=263 Identities=11% Similarity=0.058 Sum_probs=132.1
Q ss_pred EEeCCCCCCCCCccEEEEEEe---------cCCEEEEEECCCCCceEEecCCC------CcCceeEEeeeecCceEEEEE
Q 001387 535 LDINPIGENPSYSQIAAVGMW---------TDISVRIFSLPDLNLITKEHLGG------EIIPRSVLLCAFEGISYLLCA 599 (1088)
Q Consensus 535 l~~~~~~~~~~~~~~~~vg~w---------~~~~i~i~~l~~l~~~~~~~l~~------~~~p~si~~~~~~~~~~L~vg 599 (1088)
++++| ...++.|+.| .++.+.+|+..+++.+..-.++. ..-|+.+.+.. +..+|++.
T Consensus 83 va~sp------DG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp--DGk~lyVa 154 (386)
T 3sjl_D 83 PVVAD------DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP--DGKTLLFY 154 (386)
T ss_dssp EEECT------TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT--TSSEEEEE
T ss_pred EEECC------CCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC--CCCEEEEE
Confidence 77765 2456666653 25789999998888766544431 12577776654 34567776
Q ss_pred eC--CCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEecCCceEEEec--CCcEEEeecccccceeeec
Q 001387 600 LG--DGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSS--NKKLLYSNVNLKEVSHMCP 675 (1088)
Q Consensus 600 l~--~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~i~~~--~~~~~~~~l~~~~i~~~~~ 675 (1088)
-. ++.+.+ +|..++++ .+++.++.. ..+.+ .+....+-++.+..++.... .+++.-..........-.-
T Consensus 155 n~~~~~~VsV--ID~~t~~v--v~tI~v~g~-~~~~P--~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~ 227 (386)
T 3sjl_D 155 QFSPAPAVGV--VDLEGKAF--KRMLDVPDC-YHIFP--TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL 227 (386)
T ss_dssp ECSSSCEEEE--EETTTTEE--EEEEECCSE-EEEEE--EETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCB
T ss_pred EcCCCCeEEE--EECCCCcE--EEEEECCCc-ceeec--CCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccc
Confidence 53 455554 45444322 222333221 11112 11112223333333333221 1232110000000000000
Q ss_pred cCCCCC--CCe-EEEEe-CCeEEEEEEcCCCCeEEEEEeC--------CCcc---CeEEEecCCCEEEEEEeecCCCcCc
Q 001387 676 FNSAAF--PDS-LAIAK-EGELTIGTIDDIQKLHIRSIPL--------GEHP---RRICHQEQSRTFAICSLKNQSCAEE 740 (1088)
Q Consensus 676 f~~~~~--~~~-l~~~~-~~~l~i~~l~~~~~~~~~~i~l--------~~tp---~~i~y~~~~~~~~v~~~~~~~~~~~ 740 (1088)
|.+..+ +++ +++++ ++.+.+..+.....-..+++.+ +-.| .-+++++..+.+.|+..........
T Consensus 228 ~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk 307 (386)
T 3sjl_D 228 INHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHK 307 (386)
T ss_dssp CSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTT
T ss_pred cccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccC
Confidence 111111 344 66655 5666666665443334444442 1112 3377788888777775432111111
Q ss_pred ceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEE
Q 001387 741 SEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKE 820 (1088)
Q Consensus 741 ~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~ 820 (1088)
.....|-++|.+|++++.++.+.. .+.+ +.+..++++.+.+... ..|.|.+++... .+++.+.+
T Consensus 308 ~~~~~V~viD~~t~kv~~~i~vg~--~~~~---lavs~D~~~~ly~tn~---------~~~~VsViD~~t--~k~~~~i~ 371 (386)
T 3sjl_D 308 TASRFVVVLDAKTGERLAKFEMGH--EIDS---INVSQDEKPLLYALST---------GDKTLYIHDAES--GEELRSVN 371 (386)
T ss_dssp SCEEEEEEEETTTCCEEEEEEEEE--EECE---EEECSSSSCEEEEEET---------TTTEEEEEETTT--CCEEEEEC
T ss_pred CCCCEEEEEECCCCeEEEEEECCC--Ccce---EEECCCCCeEEEEEcC---------CCCeEEEEECCC--CcEEEEec
Confidence 234789999999999999988764 3333 4456666666665542 357888887654 34566666
Q ss_pred ecCceeEe
Q 001387 821 TKGAVYSL 828 (1088)
Q Consensus 821 ~~g~v~ai 828 (1088)
..|.+..+
T Consensus 372 ~~~~p~~l 379 (386)
T 3sjl_D 372 QLGHGPQV 379 (386)
T ss_dssp CCCSSCCE
T ss_pred CCCCCcee
Confidence 66655444
No 126
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=95.75 E-value=0.9 Score=51.66 Aligned_cols=253 Identities=13% Similarity=0.139 Sum_probs=121.8
Q ss_pred EEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCC----------CCceEEecCCCCcCceeEEeee
Q 001387 520 LTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD----------LNLITKEHLGGEIIPRSVLLCA 589 (1088)
Q Consensus 520 l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~----------l~~~~~~~l~~~~~p~si~~~~ 589 (1088)
+...........|+++++.+- ...+++.|.. +|.|.+|++.. ........ .....+.++.+..
T Consensus 119 ~~~~~~~~h~~~v~~l~~~p~-----~~~~lat~~~-dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 119 IEIEIKINHEGEVNRARYMPQ-----NACVIATKTP-SSDVLVFDYTKHPSKPEPSGECQPDLRLR-GHQKEGYGLSWNP 191 (430)
T ss_dssp EEEEEEEEESSCCSEEEEETT-----EEEEEEEECS-SSCEEEEEGGGSCSSCCTTCCCCCSEEEE-CCSSCCCCEEECT
T ss_pred eEEEEEEcCCCcEEEEEECCC-----CCcEEEEECC-CCcEEEEECCCcccccCccccCCCcEEec-CCCCCeEEEEeCC
Confidence 333333444677899988651 1456777766 99999999864 22222111 1112234444332
Q ss_pred ecCceEEEEEeCCCcEEEEEEecCCCc---cccceeeecCccceeEEEEEeCCceEEEEe-c-CCceEEEecC-C---c-
Q 001387 590 FEGISYLLCALGDGHLLNFLLNMKTGE---LTDRKKVSLGTQPITLRTFSSKNTTHVFAA-S-DRPTVIYSSN-K---K- 659 (1088)
Q Consensus 590 ~~~~~~L~vgl~~G~l~~y~~~~~~~~---l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~-~-~~p~~i~~~~-~---~- 659 (1088)
. +..+|+.|..||.+..|.+...... +...+...--..++.-..+... ...+|++ + +....++.-+ + +
T Consensus 192 ~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~ 269 (430)
T 2xyi_A 192 N-LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKP 269 (430)
T ss_dssp T-STTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSC
T ss_pred C-CCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcc
Confidence 1 2338899999999999987642111 1111111111223322223211 2234433 3 3333333221 1 1
Q ss_pred EEEeecccccceeeeccCCCCCCCe-EEEEe-CCeEEEEEEcCCCCeEEEEEe-CCCccCeEEEecCCCEEEEEEeecCC
Q 001387 660 LLYSNVNLKEVSHMCPFNSAAFPDS-LAIAK-EGELTIGTIDDIQKLHIRSIP-LGEHPRRICHQEQSRTFAICSLKNQS 736 (1088)
Q Consensus 660 ~~~~~l~~~~i~~~~~f~~~~~~~~-l~~~~-~~~l~i~~l~~~~~~~~~~i~-l~~tp~~i~y~~~~~~~~v~~~~~~~ 736 (1088)
......+...+.+++ |+. .... ++... ++.+++..+..... ....+. -...+..+.++|..+.+++.+...
T Consensus 270 ~~~~~~~~~~v~~i~-~~p--~~~~~l~tg~~dg~v~vwd~~~~~~-~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d-- 343 (430)
T 2xyi_A 270 SHTVDAHTAEVNCLS-FNP--YSEFILATGSADKTVALWDLRNLKL-KLHSFESHKDEIFQVQWSPHNETILASSGTD-- 343 (430)
T ss_dssp SEEEECCSSCEEEEE-ECS--SCTTEEEEEETTSEEEEEETTCTTS-CSEEEECCSSCEEEEEECSSCTTEEEEEETT--
T ss_pred eeEeecCCCCeEEEE-eCC--CCCCEEEEEeCCCeEEEEeCCCCCC-CeEEeecCCCCEEEEEECCCCCCEEEEEeCC--
Confidence 111111222333322 221 1122 33333 68888888876432 223333 345678899999886544444322
Q ss_pred CcCcceeEEEEEEeCCCc--------------eEEEEEECCCC-ceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcce
Q 001387 737 CAEESEMHFVRLLDDQTF--------------EFISTYPLDTF-EYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKG 801 (1088)
Q Consensus 737 ~~~~~~~s~l~lid~~t~--------------~~i~~~~~~~~-E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~G 801 (1088)
..|+++|..+. +.+ +.+..+ ..+.++. +..+++.+++.|. ..|
T Consensus 344 -------~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~~~---~~p~~~~~l~s~s----------~dg 401 (430)
T 2xyi_A 344 -------RRLHVWDLSKIGEEQSTEDAEDGPPELL--FIHGGHTAKISDFS---WNPNEPWIICSVS----------EDN 401 (430)
T ss_dssp -------SCCEEEEGGGTTCCCCHHHHHHCCTTEE--EECCCCSSCEEEEE---ECSSSTTEEEEEE----------TTS
T ss_pred -------CcEEEEeCCCCccccCccccccCCcceE--EEcCCCCCCceEEE---ECCCCCCEEEEEE----------CCC
Confidence 35777765431 222 223322 2345443 3333333555554 348
Q ss_pred EEEEEEEe
Q 001387 802 RILVFIVE 809 (1088)
Q Consensus 802 ri~v~~i~ 809 (1088)
.|.+|++.
T Consensus 402 ~i~iw~~~ 409 (430)
T 2xyi_A 402 IMQVWQMA 409 (430)
T ss_dssp EEEEEEEC
T ss_pred CEEEeEcc
Confidence 99999987
No 127
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=95.66 E-value=3.2 Score=45.19 Aligned_cols=218 Identities=10% Similarity=0.042 Sum_probs=117.1
Q ss_pred CCeEEEEEEcCCC-----CeEEEEEeC-CCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECC
Q 001387 690 EGELTIGTIDDIQ-----KLHIRSIPL-GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD 763 (1088)
Q Consensus 690 ~~~l~i~~l~~~~-----~~~~~~i~l-~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~ 763 (1088)
++.+++-.+.... ..+.+.+.- ......++++|+.+.++.++.+ ..|++.|..+.+.+..+.-.
T Consensus 48 D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D----------~~v~lwd~~~~~~~~~~~~h 117 (343)
T 2xzm_R 48 DKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD----------KTLRLWDLRTGTTYKRFVGH 117 (343)
T ss_dssp TSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETT----------SEEEEEETTSSCEEEEEECC
T ss_pred CCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCC----------CcEEEEECCCCcEEEEEcCC
Confidence 5667776665432 122233221 2345678888887766655433 57999999888877766533
Q ss_pred CCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEE-EEEecCceeEecccc----------
Q 001387 764 TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIA-EKETKGAVYSLNAFN---------- 832 (1088)
Q Consensus 764 ~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~-~~~~~g~v~ai~~~~---------- 832 (1088)
. ..+.++ .+..+ ..+++.|. ..|.|.+|++......... .....+.|.+++--.
T Consensus 118 ~-~~v~~v---~~sp~-~~~l~s~~----------~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 182 (343)
T 2xzm_R 118 Q-SEVYSV---AFSPD-NRQILSAG----------AEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQP 182 (343)
T ss_dssp C-SCEEEE---EECSS-TTEEEEEE----------TTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCS
T ss_pred C-CcEEEE---EECCC-CCEEEEEc----------CCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCC
Confidence 3 234444 34433 45666665 3478899987633221111 012445666665321
Q ss_pred --CeEEEE-ECCEEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCC
Q 001387 833 --GKLLAA-INQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYN 909 (1088)
Q Consensus 833 --g~Lv~~-~g~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~ 909 (1088)
.+++.+ .+..|++|+. .+ ........+...+..++....+++++.|..-..+.++...........+. .
T Consensus 183 ~~~~l~s~~~d~~i~iwd~----~~-~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~---~ 254 (343)
T 2xzm_R 183 FAPYFASVGWDGRLKVWNT----NF-QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD---A 254 (343)
T ss_dssp SCCEEEEEETTSEEEEEET----TT-EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE---C
T ss_pred CCCEEEEEcCCCEEEEEcC----CC-ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec---C
Confidence 334433 3467887662 11 11111111222233333344577999999888887754422222222221 1
Q ss_pred CceeEEEEEeeCceEEEEccCCcEEEEeeCC
Q 001387 910 ANWMSAVEILDDDIYLGAENNFNLFTVRKNS 940 (1088)
Q Consensus 910 ~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~~ 940 (1088)
...+.++.|-.++.++++-.++.+.++....
T Consensus 255 ~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~ 285 (343)
T 2xzm_R 255 GSTINQIAFNPKLQWVAVGTDQGVKIFNLMT 285 (343)
T ss_dssp SSCEEEEEECSSSCEEEEEESSCEEEEESSS
T ss_pred CCcEEEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 2346777776666666666678899888653
No 128
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=95.58 E-value=3.2 Score=44.86 Aligned_cols=143 Identities=16% Similarity=0.099 Sum_probs=84.0
Q ss_pred CCeEEEEEEcCCCCeEEEEEeCCC--ccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCC--
Q 001387 690 EGELTIGTIDDIQKLHIRSIPLGE--HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTF-- 765 (1088)
Q Consensus 690 ~~~l~i~~l~~~~~~~~~~i~l~~--tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~-- 765 (1088)
++.+.+-.+. ..-..++++++. .|..++++|+.+.++++.... ..|.++|..+.+.+..+++...
T Consensus 20 ~~~v~~~d~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~---------~~i~~~d~~t~~~~~~~~~~~~~~ 88 (349)
T 1jmx_B 20 PNNLHVVDVA--SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY---------GDIYGIDLDTCKNTFHANLSSVPG 88 (349)
T ss_dssp TTEEEEEETT--TTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTT---------TEEEEEETTTTEEEEEEESCCSTT
T ss_pred CCeEEEEECC--CCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCC---------CcEEEEeCCCCcEEEEEEcccccc
Confidence 5666655443 344667888887 799999999988666654322 4789999999998888876542
Q ss_pred ---ceEeEEEEEEEcCCCceEEEEEeee--eCCCCCCCcceEEEEEEEeCCe-EEEEEEEEecCceeEeccc-cCeEEEE
Q 001387 766 ---EYGCSILSCSFSDDSNVYYCVGTAY--VLPEENEPTKGRILVFIVEDGK-LQLIAEKETKGAVYSLNAF-NGKLLAA 838 (1088)
Q Consensus 766 ---E~v~si~~~~~~~~~~~~i~VGT~~--~~~~e~~~~~Gri~v~~i~~~k-l~~~~~~~~~g~v~ai~~~-~g~Lv~~ 838 (1088)
..+.++ .+..++ .+++++... ....+.....+.|++|++..++ .+.+........+.+++-- +|++++
T Consensus 89 ~~~~~~~~~---~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~~- 163 (349)
T 1jmx_B 89 EVGRSMYSF---AISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV- 163 (349)
T ss_dssp EEEECSSCE---EECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE-
T ss_pred cccccccce---EECCCC-CEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCcEEE-
Confidence 222332 344433 456665532 1101111124789999887432 2223333444456665532 567555
Q ss_pred ECCEEEEEEe
Q 001387 839 INQKIQLYKW 848 (1088)
Q Consensus 839 ~g~~l~v~~~ 848 (1088)
.+..+++++.
T Consensus 164 ~~~~i~~~d~ 173 (349)
T 1jmx_B 164 AGPDIYKMDV 173 (349)
T ss_dssp ESSSEEEECT
T ss_pred ccCcEEEEeC
Confidence 5666766553
No 129
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=95.46 E-value=2.3 Score=46.35 Aligned_cols=137 Identities=13% Similarity=0.125 Sum_probs=83.5
Q ss_pred cCcEEEEecCCcceeeeeeCCCCCcEEEEEECC----CEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCC
Q 001387 466 SGSVRLVSSTSRELRNEWKSPPGYSVNVATANA----SQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIG 541 (1088)
Q Consensus 466 ~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~~----~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~ 541 (1088)
...+.+++..+.+.+.....+....|.+.+.++ ..++.+..++.+.+.++..++............++|+++.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-- 180 (343)
T 3lrv_A 103 GNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-- 180 (343)
T ss_dssp TTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT--
T ss_pred cCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC--
Confidence 334555555544434444433434688777644 46666667888888888766553333233445689999975
Q ss_pred CCCCCccEEEEEEecCCEEEEEECCCCCce-EEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEec
Q 001387 542 ENPSYSQIAAVGMWTDISVRIFSLPDLNLI-TKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNM 612 (1088)
Q Consensus 542 ~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~-~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~ 612 (1088)
.+.+++.|.. |+.|++|++.+.+.+ ............++.+.+ +..+|+.|. +|.+..|.+..
T Consensus 181 ----dg~~lasg~~-dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~--~g~~l~s~~-~~~v~iwd~~~ 244 (343)
T 3lrv_A 181 ----DSLLLALYSP-DGILDVYNLSSPDQASSRFPVDEEAKIKEVKFAD--NGYWMVVEC-DQTVVCFDLRK 244 (343)
T ss_dssp ----TSCEEEEECT-TSCEEEEESSCTTSCCEECCCCTTSCEEEEEECT--TSSEEEEEE-SSBEEEEETTS
T ss_pred ----CCCEEEEEcC-CCEEEEEECCCCCCCccEEeccCCCCEEEEEEeC--CCCEEEEEe-CCeEEEEEcCC
Confidence 2578888877 999999999875544 222221223445555443 346777777 66777776543
No 130
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=95.44 E-value=3.6 Score=44.30 Aligned_cols=274 Identities=12% Similarity=0.104 Sum_probs=141.2
Q ss_pred cEEEEEECC---CEEEEEECCCeEEEEEEcC--cEEE-EEeec-cCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEE
Q 001387 490 SVNVATANA---SQVLLATGGGHLVYLEIGD--GILT-EVKHA-QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRI 562 (1088)
Q Consensus 490 ~I~~a~~~~---~~lvv~~~~~~l~~~~~~~--~~l~-~~~~~-~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i 562 (1088)
.|.+.+..+ ..++-+..++.+...++.. .+.. .+..+ .-...|.++++.+ ...+++.|.+ |+++++
T Consensus 19 ~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~------dg~~l~s~s~-D~~v~~ 91 (319)
T 3frx_A 19 WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA------DGAYALSASW-DKTLRL 91 (319)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECT------TSSEEEEEET-TSEEEE
T ss_pred eEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECC------CCCEEEEEeC-CCEEEE
Confidence 566666542 4555565677777666542 1111 11111 2345688888864 2578888888 999999
Q ss_pred EECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecCc-cceeEEEEEeC---
Q 001387 563 FSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGT-QPITLRTFSSK--- 638 (1088)
Q Consensus 563 ~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~-~pv~l~~~~~~--- 638 (1088)
|++.+.+.+.... .......++.+. .+..+|+.|..||.+..|.+... .+ ....|. .++.-..+...
T Consensus 92 wd~~~~~~~~~~~-~h~~~v~~~~~~--~~~~~l~s~s~D~~i~vwd~~~~--~~----~~~~~h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 92 WDVATGETYQRFV-GHKSDVMSVDID--KKASMIISGSRDKTIKVWTIKGQ--CL----ATLLGHNDWVSQVRVVPNEKA 162 (319)
T ss_dssp EETTTTEEEEEEE-CCSSCEEEEEEC--TTSCEEEEEETTSCEEEEETTSC--EE----EEECCCSSCEEEEEECCC---
T ss_pred EECCCCCeeEEEc-cCCCcEEEEEEc--CCCCEEEEEeCCCeEEEEECCCC--eE----EEEeccCCcEEEEEEccCCCC
Confidence 9998755432211 111233444433 24567889999999999875321 11 111121 12211111100
Q ss_pred --CceEEEEecCCceEEEec-C-CcEEEe-ecccccceeeeccCCCCCCCeEEEEe-CCeEEEEEEcCCCCeEEEEEeCC
Q 001387 639 --NTTHVFAASDRPTVIYSS-N-KKLLYS-NVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPLG 712 (1088)
Q Consensus 639 --~~~~v~~~~~~p~~i~~~-~-~~~~~~-~l~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l~ 712 (1088)
+...++..+..-.+-.++ + .+.... .-+...+.+++ |+. ....++... ++.+++-.+... -..+.+...
T Consensus 163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~-~sp--~g~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~ 237 (319)
T 3frx_A 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-ASP--DGTLIASAGKDGEIMLWNLAAK--KAMYTLSAQ 237 (319)
T ss_dssp ---CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEE-ECT--TSSEEEEEETTCEEEEEETTTT--EEEEEEECC
T ss_pred CCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEE-EcC--CCCEEEEEeCCCeEEEEECCCC--cEEEEecCC
Confidence 111233333332222222 1 121110 01112333322 211 122344443 677888777653 345566666
Q ss_pred CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECC-------CCceEeEEEEEEEcCCCceEEE
Q 001387 713 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD-------TFEYGCSILSCSFSDDSNVYYC 785 (1088)
Q Consensus 713 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~-------~~E~v~si~~~~~~~~~~~~i~ 785 (1088)
..+..++++|+...++.++. ..+++++..+...+..+.-. ....+.++ .+.. ...+|+
T Consensus 238 ~~v~~~~~sp~~~~la~~~~-----------~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~sp-dg~~l~ 302 (319)
T 3frx_A 238 DEVFSLAFSPNRYWLAAATA-----------TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSL---AWSA-DGQTLF 302 (319)
T ss_dssp SCEEEEEECSSSSEEEEEET-----------TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEE---EECT-TSSEEE
T ss_pred CcEEEEEEcCCCCEEEEEcC-----------CCcEEEEeCcCeeeeccCccccccccCcCcceeEE---EECC-CCCEEE
Confidence 77888999999887766542 23777776666655544311 11233443 3443 356777
Q ss_pred EEeeeeCCCCCCCcceEEEEEEEe
Q 001387 786 VGTAYVLPEENEPTKGRILVFIVE 809 (1088)
Q Consensus 786 VGT~~~~~~e~~~~~Gri~v~~i~ 809 (1088)
.|. ..|.|.+|++.
T Consensus 303 sg~----------~Dg~i~vWd~~ 316 (319)
T 3frx_A 303 AGY----------TDNVIRVWQVM 316 (319)
T ss_dssp EEE----------TTSCEEEEEEE
T ss_pred Eee----------cCceEEEEEEe
Confidence 775 34789999874
No 131
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=95.38 E-value=3.9 Score=44.34 Aligned_cols=181 Identities=7% Similarity=-0.055 Sum_probs=95.6
Q ss_pred EEEEcCCCCeEEEEEeCCC------ccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceE
Q 001387 695 IGTIDDIQKLHIRSIPLGE------HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYG 768 (1088)
Q Consensus 695 i~~l~~~~~~~~~~i~l~~------tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v 768 (1088)
+..++....-..++++++. .|..+++ ...+.| |+... ....|.++|+.+++.+..+.... .+
T Consensus 107 v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~ly-v~~~~--------~~~~v~viD~~t~~~~~~i~~g~--~p 174 (328)
T 3dsm_A 107 IFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVY-VNCWS--------YQNRILKIDTETDKVVDELTIGI--QP 174 (328)
T ss_dssp EEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEE-EEECT--------TCCEEEEEETTTTEEEEEEECSS--CB
T ss_pred EEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEE-EEcCC--------CCCEEEEEECCCCeEEEEEEcCC--Cc
Confidence 3344544455677899998 9999998 444444 44321 12579999999999888877643 33
Q ss_pred eEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEec--CceeEeccc--cCeEEEEECCEEE
Q 001387 769 CSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETK--GAVYSLNAF--NGKLLAAINQKIQ 844 (1088)
Q Consensus 769 ~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~--g~v~ai~~~--~g~Lv~~~g~~l~ 844 (1088)
..+. +..++ .++++..............++|++++...+++.. ...++ ..+..++-- +++|+++. .+++
T Consensus 175 ~~i~---~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~~~~g~~p~~la~~~d~~~lyv~~-~~v~ 247 (328)
T 3dsm_A 175 TSLV---MDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFKFKLGDWPSEVQLNGTRDTLYWIN-NDIW 247 (328)
T ss_dssp CCCE---ECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEECCTTCCCEEEEECTTSCEEEEES-SSEE
T ss_pred cceE---EcCCC-CEEEEECCCccCCccccCCceEEEEECCCCeEEE--EEecCCCCCceeEEEecCCCEEEEEc-cEEE
Confidence 3332 33333 3444433211100001125889888876666543 33332 357777755 34555554 4666
Q ss_pred EEEeeeccCccccccccccccc-ceEEEEEEE--eCCEEEEEec---cccEEEEEEeccCC
Q 001387 845 LYKWMLRDDGTRELQSECGHHG-HILALYVQT--RGDFIVVGDL---MKSISLLIYKHEEG 899 (1088)
Q Consensus 845 v~~~~~~~~~~~~L~~~~~~~~-~~~~~~l~~--~~~~I~vgD~---~~Sv~~~~~~~~~~ 899 (1088)
+++. . .+ ++........ ...+..+.+ .+++|+|+|. ..+=.+..|+.+..
T Consensus 248 ~~d~--~-t~--~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~ 303 (328)
T 3dsm_A 248 RMPV--E-AD--RVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGK 303 (328)
T ss_dssp EEET--T-CS--SCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCC
T ss_pred EEEC--C-CC--ceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCC
Confidence 5553 2 12 2222111111 123444444 4678999982 22334566777643
No 132
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=95.26 E-value=4.3 Score=44.20 Aligned_cols=114 Identities=11% Similarity=0.028 Sum_probs=70.0
Q ss_pred cEEEEEEC--CCEEEEEECCCeEEEEEEcCcEEEEEe--eccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEEC
Q 001387 490 SVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVK--HAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL 565 (1088)
Q Consensus 490 ~I~~a~~~--~~~lvv~~~~~~l~~~~~~~~~l~~~~--~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l 565 (1088)
.|.+.+.+ +..++.+..++.+.+..+..++..... ...-...|.|+++.| .+.+++.|.+ |+.+.+|++
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp------~g~~l~s~s~-D~~v~iw~~ 90 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP------CGNYLASASF-DATTCIWKK 90 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT------TSSEEEEEET-TSCEEEEEE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC------CCCEEEEEEC-CCcEEEEEc
Confidence 45555544 345555555677777776654432211 122356799999975 2578888888 999999998
Q ss_pred CCCCceEEecCC-CCcCceeEEeeeecCceEEEEEeCCCcEEEEEEec
Q 001387 566 PDLNLITKEHLG-GEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNM 612 (1088)
Q Consensus 566 ~~l~~~~~~~l~-~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~ 612 (1088)
..-.......+. ......++.+.+ +..+|..|..||.+..|.+..
T Consensus 91 ~~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~s~D~~v~iwd~~~ 136 (345)
T 3fm0_A 91 NQDDFECVTTLEGHENEVKSVAWAP--SGNLLATCSRDKSVWVWEVDE 136 (345)
T ss_dssp CCC-EEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEEECT
T ss_pred cCCCeEEEEEccCCCCCceEEEEeC--CCCEEEEEECCCeEEEEECCC
Confidence 643221111222 112344554443 456888999999999999865
No 133
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=95.18 E-value=1.1 Score=48.33 Aligned_cols=245 Identities=12% Similarity=0.110 Sum_probs=127.1
Q ss_pred CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCC-ceEeEEEEEEEcCC-CceEEEEEeee
Q 001387 713 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTF-EYGCSILSCSFSDD-SNVYYCVGTAY 790 (1088)
Q Consensus 713 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~-E~v~si~~~~~~~~-~~~~i~VGT~~ 790 (1088)
...+.++++|+.+.++.++.+ ..+++.|..+.+......|..+ ..+.+++ +... ...+++.|.
T Consensus 14 ~~V~~v~~s~~g~~lasgs~D----------~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~---~~~~~~~~~l~s~s-- 78 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRLATCSSD----------RSVKIFDVRNGGQILIADLRGHEGPVWQVA---WAHPMYGNILASCS-- 78 (316)
T ss_dssp CCEEEEEECGGGCEEEEEETT----------TEEEEEEEETTEEEEEEEEECCSSCEEEEE---ECCGGGSSCEEEEE--
T ss_pred CeEEEeeEcCCCCEEEEEeCC----------CeEEEEEecCCCcEEEEEEcCCCccEEEEE---eCCCCCCCEEEEEE--
Confidence 345678888888877666543 4788888766543222334333 3344443 3221 235677665
Q ss_pred eCCCCCCCcceEEEEEEEeCCeEEEEEE-EEecCceeEecccc---CeEEEEE--CCEEEEEEeeeccCcccccccc-cc
Q 001387 791 VLPEENEPTKGRILVFIVEDGKLQLIAE-KETKGAVYSLNAFN---GKLLAAI--NQKIQLYKWMLRDDGTRELQSE-CG 863 (1088)
Q Consensus 791 ~~~~e~~~~~Gri~v~~i~~~kl~~~~~-~~~~g~v~ai~~~~---g~Lv~~~--g~~l~v~~~~~~~~~~~~L~~~-~~ 863 (1088)
..|.+.+|++..++.+.+.. ..+.++|.+++--. |.++++. .+.++++++. ..+..++... ..
T Consensus 79 --------~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~--~~~~~~~~~~~~~ 148 (316)
T 3bg1_A 79 --------YDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYT--GEGQWEVKKINNA 148 (316)
T ss_dssp --------TTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEEC--SSSCEEECCBTTS
T ss_pred --------CCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecC--CCCCcceeeeecc
Confidence 23788999887654433333 24678899987542 4444443 3678887763 1111111111 11
Q ss_pred cccceEEEEEEE-----------------eCCEEEEEeccccEEEEEEeccCCeEEEEe-ccCCCceeEEEEEeeC----
Q 001387 864 HHGHILALYVQT-----------------RGDFIVVGDLMKSISLLIYKHEEGAIEERA-RDYNANWMSAVEILDD---- 921 (1088)
Q Consensus 864 ~~~~~~~~~l~~-----------------~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~-~D~~~~~v~~~~~l~~---- 921 (1088)
+......+.... .+.+++.|..-..+.++..+. ......+. -..+..+|.++.+-.+
T Consensus 149 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~-~~~~~~~~~l~~h~~~V~~v~~sp~~~~~ 227 (316)
T 3bg1_A 149 HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEE-DGQWKEEQKLEAHSDWVRDVAWAPSIGLP 227 (316)
T ss_dssp SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECT-TSCEEEEECCBCCSSCEEEEECCCCSSCS
T ss_pred ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCC-CCccceeeecccCCCceEEEEecCCCCCC
Confidence 111111111110 135677787777777765532 22222221 1234567888877544
Q ss_pred -ceEEEEccCCcEEEEeeCCCCCCcccccceeEEEEEEcCCccceEEeeeeeecCCCCCCCCccEEEEEcccccEEEEE
Q 001387 922 -DIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIA 999 (1088)
Q Consensus 922 -~~~l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~~l~~t~~G~i~~l~ 999 (1088)
..++.+..+|.+.++......... ....... ...+.|.++. +. | ....++.++.||.|....
T Consensus 228 ~~~las~s~D~~v~iw~~~~~~~~~---~~~~~~~--~~~~~v~~v~---~s---p-----~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 228 TSTIASCSQDGRVFIWTCDDASSNT---WSPKLLH--KFNDVVWHVS---WS---I-----TANILAVSGGDNKVTLWK 290 (316)
T ss_dssp CCEEEEEETTCEEEEEECSSTTCCC---CBCCEEE--ECSSCEEEEE---EC---T-----TTCCEEEEESSSCEEEEE
T ss_pred CceEEEEcCCCeEEEEEccCccccc---hhhhhhh--cCCCcEEEEE---Ec---C-----CCCEEEEEcCCCeEEEEE
Confidence 346778889999999865421110 0111111 1234454432 11 1 235677778888887654
No 134
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=95.02 E-value=4.7 Score=43.28 Aligned_cols=283 Identities=13% Similarity=0.067 Sum_probs=141.3
Q ss_pred CccccceEEEEec--CCeEEEeeecCCeEEEEEeeCCCCCCCcEEEEeeec-cCCceeeeEEeccCCCCCceEEEEeeCC
Q 001387 298 GETSIASTISYLD--NAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYV-NLGPIVDFCVVDLERQGQGQVVTCSGAY 374 (1088)
Q Consensus 298 ~~~~~~s~l~~l~--~~~lf~gS~~gds~l~~~~~~~~~~~~~~~~~~~l~-n~~Pi~D~~~~~~~~~~~~~l~~~sG~g 374 (1088)
|-....+++..-. +.+|+.||.-|.=.++.+..... ..-.....+. .-++|.++++.+. .++++++|
T Consensus 36 GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~---~~~~~~~~l~~h~~~V~~~~~s~d-----g~~l~s~~-- 105 (340)
T 4aow_A 36 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET---NYGIPQRALRGHSHFVSDVVISSD-----GQFALSGS-- 105 (340)
T ss_dssp CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS---CSEEEEEEECCCSSCEEEEEECTT-----SSEEEEEE--
T ss_pred CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc---ccceeeEEEeCCCCCEEEEEECCC-----CCEEEEEc--
Confidence 4444556666553 34777788666556666654321 1112233343 2478888887542 33444333
Q ss_pred CCceEEEEecCCceeEEEeeeCCCcceEEEeecCCCCCCccEEEEEecCce-EEEEecCCCceeeeeecceeccccceee
Q 001387 375 KDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISET-RILAMNLEDELEETEIEGFCSQTQTLFC 453 (1088)
Q Consensus 375 ~~g~L~~lr~gi~~~~~~~~~l~~v~~iw~l~~~~~~~~~~~lilS~~~~T-~vl~~~~~~~~~e~~~~~f~~~~~Ti~~ 453 (1088)
..|.++.....-.................... ....+++....+.+ .++.+... ........+- ...+.+
T Consensus 106 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~s~s~d~~~~~~d~~~~-~~~~~~~~~~---~~~v~~ 176 (340)
T 4aow_A 106 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS-----SDNRQIVSGSRDKTIKLWNTLGV-CKYTVQDESH---SEWVSC 176 (340)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEEC-----TTSSCEEEEETTSCEEEECTTSC-EEEEECSSSC---SSCEEE
T ss_pred ccccceEEeecccceeeeecCCCCceeEEEEe-----ecCccceeecCCCeEEEEEeCCC-ceEEEEeccc---cCcccc
Confidence 45777776655544333322222222111111 12334444444333 33322211 0000000000 111111
Q ss_pred eec---CCC-eEEEEe-cCcEEEEecCCcceeeeeeCCCCCcEEEEEEC--CCEEEEEECCCeEEEEEEcCcEEEEEeec
Q 001387 454 HDA---IYN-QLVQVT-SGSVRLVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHA 526 (1088)
Q Consensus 454 ~~~---~~~-~ivQVt-~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~~~~~l~~~~~~~~~l~~~~~~ 526 (1088)
..+ ..+ .++-.. ...|++.+....+....+.. ....|.+.+.+ +..++.+..++.+.+.++...+.. ...
T Consensus 177 ~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~--~~~ 253 (340)
T 4aow_A 177 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG-HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL--YTL 253 (340)
T ss_dssp EEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE--EEE
T ss_pred eEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecC-CCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCcee--eee
Confidence 111 111 222222 24577777765444444433 23468877765 457777777888888777654322 222
Q ss_pred cCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCC--------CCcCceeEEeeeecCceEEEE
Q 001387 527 QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLG--------GEIIPRSVLLCAFEGISYLLC 598 (1088)
Q Consensus 527 ~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~--------~~~~p~si~~~~~~~~~~L~v 598 (1088)
.....+.++.+.+ ...++++.. ++.+.+|+++....+....-. ......++.+. .+..+|+.
T Consensus 254 ~~~~~v~~~~~~~-------~~~~~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s--~dg~~l~s 323 (340)
T 4aow_A 254 DGGDIINALCFSP-------NRYWLCAAT-GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWS--ADGQTLFA 323 (340)
T ss_dssp ECSSCEEEEEECS-------SSSEEEEEE-TTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEEC--TTSSEEEE
T ss_pred cCCceEEeeecCC-------CCceeeccC-CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEEC--CCCCEEEE
Confidence 3445688888864 334555666 899999999864443321110 01122334333 24568999
Q ss_pred EeCCCcEEEEEEec
Q 001387 599 ALGDGHLLNFLLNM 612 (1088)
Q Consensus 599 gl~~G~l~~y~~~~ 612 (1088)
|..||.+..|++..
T Consensus 324 gs~Dg~v~iW~~~t 337 (340)
T 4aow_A 324 GYTDNLVRVWQVTI 337 (340)
T ss_dssp EETTSCEEEEEEEC
T ss_pred EeCCCEEEEEeCCC
Confidence 99999999998764
No 135
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=95.02 E-value=4.9 Score=43.51 Aligned_cols=232 Identities=7% Similarity=0.036 Sum_probs=113.0
Q ss_pred CcEEEEecCCcceeeeeeCCCCCcEEEEEE-CCCEEEEEE-CCCeEEEEEEcCcEEEEEeeccCCc------eeEEEEeC
Q 001387 467 GSVRLVSSTSRELRNEWKSPPGYSVNVATA-NASQVLLAT-GGGHLVYLEIGDGILTEVKHAQLEY------EISCLDIN 538 (1088)
Q Consensus 467 ~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~-~~~~lvv~~-~~~~l~~~~~~~~~l~~~~~~~l~~------~is~l~~~ 538 (1088)
..|.+++.++.+.+.++. .+......+. .+..+.++. .++.+..+....+++.. ..+... .+..+++.
T Consensus 64 ~~v~viD~~t~~~~~~i~--~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~--~i~~g~~~~~~~~p~~i~~~ 139 (328)
T 3dsm_A 64 HVIFAIDINTFKEVGRIT--GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITG--YIECPDMDMESGSTEQMVQY 139 (328)
T ss_dssp TEEEEEETTTCCEEEEEE--CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEE--EEECTTCCTTTCBCCCEEEE
T ss_pred CEEEEEECcccEEEEEcC--CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEE--EEEcCCccccCCCcceEEEE
Confidence 467777777655555553 2233334333 344777776 46677666655455432 223333 45556552
Q ss_pred CCCCCCCCccEEEEEEe-cCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCC-----------CcEE
Q 001387 539 PIGENPSYSQIAAVGMW-TDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGD-----------GHLL 606 (1088)
Q Consensus 539 ~~~~~~~~~~~~~vg~w-~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~-----------G~l~ 606 (1088)
...+.|+.| .++.|.++++.+.+.+...... ..|..+.+.. .-.++++... +.+
T Consensus 140 --------~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g--~~p~~i~~~~---dG~l~v~~~~~~~~~~~~~~~~~v- 205 (328)
T 3dsm_A 140 --------GKYVYVNCWSYQNRILKIDTETDKVVDELTIG--IQPTSLVMDK---YNKMWTITDGGYEGSPYGYEAPSL- 205 (328)
T ss_dssp --------TTEEEEEECTTCCEEEEEETTTTEEEEEEECS--SCBCCCEECT---TSEEEEEBCCBCTTCSSCBCCCEE-
T ss_pred --------CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC--CCccceEEcC---CCCEEEEECCCccCCccccCCceE-
Confidence 467788888 4889999998876654433332 3566665543 1235555432 444
Q ss_pred EEEEecCCCccccceeeec--CccceeEEEEEeCCceEEEEecCCceEEEecCCcEEEeecccccceeeeccCCCCCCCe
Q 001387 607 NFLLNMKTGELTDRKKVSL--GTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDS 684 (1088)
Q Consensus 607 ~y~~~~~~~~l~~~~~~~l--G~~pv~l~~~~~~~~~~v~~~~~~p~~i~~~~~~~~~~~l~~~~i~~~~~f~~~~~~~~ 684 (1088)
|.++..++++.. ...+ |..|..+. + ..+...++++...-+.+-...+++.-.+...........+.-......
T Consensus 206 -~~id~~t~~v~~--~~~~~~g~~p~~la-~-~~d~~~lyv~~~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~ 280 (328)
T 3dsm_A 206 -YRIDAETFTVEK--QFKFKLGDWPSEVQ-L-NGTRDTLYWINNDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGE 280 (328)
T ss_dssp -EEEETTTTEEEE--EEECCTTCCCEEEE-E-CTTSCEEEEESSSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCC
T ss_pred -EEEECCCCeEEE--EEecCCCCCceeEE-E-ecCCCEEEEEccEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCe
Confidence 455665554332 2333 55565443 2 223455666555222222222332100000000000000000001112
Q ss_pred EEEEe----CCeEEEEEEcCCCCeEEEEEeCCCccCeEEEec
Q 001387 685 LAIAK----EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQE 722 (1088)
Q Consensus 685 l~~~~----~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~ 722 (1088)
++.++ ...=.+..++.. .-..+++++|..|..+++-.
T Consensus 281 lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~~~ 321 (328)
T 3dsm_A 281 VYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCWKL 321 (328)
T ss_dssp EEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEEEC
T ss_pred EEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEEec
Confidence 33333 223344445444 44678889999999888743
No 136
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=94.98 E-value=11 Score=47.34 Aligned_cols=116 Identities=18% Similarity=0.259 Sum_probs=76.3
Q ss_pred CCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEEC-----CCCceEeEEEEEEE--cCCC--ce
Q 001387 712 GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPL-----DTFEYGCSILSCSF--SDDS--NV 782 (1088)
Q Consensus 712 ~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~-----~~~E~v~si~~~~~--~~~~--~~ 782 (1088)
...+..++|+|+. .+++++.+ ..|+++|..+..++....+ ...+.|.|++.-.. ..++ ..
T Consensus 575 ~~~V~svafSpdG-~lAsgs~D----------~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~ 643 (902)
T 2oaj_A 575 KGKTSAINNSNIG-FVGIAYAA----------GSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSI 643 (902)
T ss_dssp SCSEEEEEECBTS-EEEEEETT----------SEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEE
T ss_pred CCcEEEEEecCCc-EEEEEeCC----------CcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcce
Confidence 3467889999988 66666543 5799999888877754443 23344777654211 1333 47
Q ss_pred EEEEEeeeeCCCCCCCcceEEEEEEE---eCCeEEE--EEEEEe--cCceeEeccc------------------------
Q 001387 783 YYCVGTAYVLPEENEPTKGRILVFIV---EDGKLQL--IAEKET--KGAVYSLNAF------------------------ 831 (1088)
Q Consensus 783 ~i~VGT~~~~~~e~~~~~Gri~v~~i---~~~kl~~--~~~~~~--~g~v~ai~~~------------------------ 831 (1088)
+++.|+ ..|.|.+|++ ..++... ....+. +++|.+++.+
T Consensus 644 ~l~sgs----------~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~ 713 (902)
T 2oaj_A 644 LMVCGT----------DMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCI 713 (902)
T ss_dssp EEEEEE----------TTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCC
T ss_pred EEEEEe----------cCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCC
Confidence 888887 3489999999 3444332 222222 6888888754
Q ss_pred cCeEEEEECCEEEEEEe
Q 001387 832 NGKLLAAINQKIQLYKW 848 (1088)
Q Consensus 832 ~g~Lv~~~g~~l~v~~~ 848 (1088)
+++++++....+++|++
T Consensus 714 ~~~~l~~~~~~ir~~~~ 730 (902)
T 2oaj_A 714 PGIVLITGFDDIRLITL 730 (902)
T ss_dssp CEEEEEECSSEEEEECT
T ss_pred CeEEEEEeccceEEEeC
Confidence 45688888899999886
No 137
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=94.83 E-value=0.16 Score=56.54 Aligned_cols=226 Identities=14% Similarity=0.115 Sum_probs=114.8
Q ss_pred CCeEEEEEEcCCCCeEEEEEeC-CCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCce-EEEEEECCC-Cc
Q 001387 690 EGELTIGTIDDIQKLHIRSIPL-GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFE-FISTYPLDT-FE 766 (1088)
Q Consensus 690 ~~~l~i~~l~~~~~~~~~~i~l-~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~-~i~~~~~~~-~E 766 (1088)
++.+++-.+.....-..+.+.- ...+..++++|+.+.++.++.+ ..|++.|..+.+ ......+.. ..
T Consensus 32 d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d----------~~v~vwd~~~~~~~~~~~~~~~~~~ 101 (377)
T 3dwl_C 32 TNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD----------RNAYVYEKRPDGTWKQTLVLLRLNR 101 (377)
T ss_dssp SSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETT----------SSEEEC------CCCCEEECCCCSS
T ss_pred CCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC----------CeEEEEEcCCCCceeeeeEecccCC
Confidence 6667777776431012222221 3456778899988877666543 357887776544 111223333 23
Q ss_pred eEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCe-EEEEEEE-E-ecCceeEeccc-cCe-EEEEE-C
Q 001387 767 YGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGK-LQLIAEK-E-TKGAVYSLNAF-NGK-LLAAI-N 840 (1088)
Q Consensus 767 ~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~k-l~~~~~~-~-~~g~v~ai~~~-~g~-Lv~~~-g 840 (1088)
.+.+++ +.. ...+++.|+ ..|.|.+|++..++ ....... . ..++|++++-- ++. |+.+. .
T Consensus 102 ~v~~~~---~~~-~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 167 (377)
T 3dwl_C 102 AATFVR---WSP-NEDKFAVGS----------GARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD 167 (377)
T ss_dssp CEEEEE---CCT-TSSCCEEEE----------SSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS
T ss_pred ceEEEE---ECC-CCCEEEEEe----------cCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC
Confidence 344443 333 345677776 24678888877443 1122222 2 67899998855 344 44433 3
Q ss_pred CEEEEEEeeeccCc-------------ccccccccccccceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEE-ec
Q 001387 841 QKIQLYKWMLRDDG-------------TRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEER-AR 906 (1088)
Q Consensus 841 ~~l~v~~~~~~~~~-------------~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~-~~ 906 (1088)
..+++|++...+.. ..++.....+...+..+.....+++++.|..-..+.++...........+ .-
T Consensus 168 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 247 (377)
T 3dwl_C 168 RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITV 247 (377)
T ss_dssp SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCE
T ss_pred CEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEee
Confidence 67888886311100 01111111111122233333356789999888888776655432211111 11
Q ss_pred cCCCceeEEEEEeeCceEEEEccCCcEEEEeeC
Q 001387 907 DYNANWMSAVEILDDDIYLGAENNFNLFTVRKN 939 (1088)
Q Consensus 907 D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~ 939 (1088)
..+...++++.+-.++.++++-.++++.+++..
T Consensus 248 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 248 KLSQLPLRSLLWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp ECSSSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred cCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence 234456788888888777766677788888765
No 138
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=94.83 E-value=4.9 Score=42.59 Aligned_cols=261 Identities=13% Similarity=0.090 Sum_probs=132.7
Q ss_pred EEEEeCCeEEEEEEcCCCCeEEEEEeCC---CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEE
Q 001387 685 LAIAKEGELTIGTIDDIQKLHIRSIPLG---EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYP 761 (1088)
Q Consensus 685 l~~~~~~~l~i~~l~~~~~~~~~~i~l~---~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~ 761 (1088)
|+...++.++|-.+.+.+ ..+.+.+. .....++++|..+.++.++.+ ..|++.|..+++.+..+.
T Consensus 39 lAvg~D~tV~iWd~~tg~--~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~D----------g~v~iw~~~~~~~~~~~~ 106 (318)
T 4ggc_A 39 LAVALDNSVYLWSASSGD--ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS----------AEVQLWDVQQQKRLRNMT 106 (318)
T ss_dssp EEEEETTEEEEEETTTCC--EEEEEECCSTTCCEEEEEECTTSSEEEEEETT----------SEEEEEETTTTEEEEEEE
T ss_pred EEEEeCCEEEEEECCCCC--EEEEEEecCCCCeEEEEEECCCCCEEEEEECC----------CcEEEeecCCceeEEEec
Confidence 344457888887766543 33444443 346788999999988777644 479999999999887766
Q ss_pred CCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cCe-EEEEE
Q 001387 762 LDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGK-LLAAI 839 (1088)
Q Consensus 762 ~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g~-Lv~~~ 839 (1088)
-.... +.++. .. ..+++.|. ..|.+.++................+.+.++... ++. |+.+.
T Consensus 107 ~h~~~-~~~~~---~~---~~~l~s~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 169 (318)
T 4ggc_A 107 SHSAR-VGSLS---WN---SYILSSGS----------RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG 169 (318)
T ss_dssp CCSSC-EEEEE---EE---TTEEEEEE----------TTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred Cccce-EEEee---cC---CCEEEEEe----------cCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEe
Confidence 44332 23322 22 34666665 235565555443333333334456677766644 344 44443
Q ss_pred C-CEEEEEEeeeccCcccccccccccccceEEEEEEEe-CCEEEE--EeccccEEEEEEeccCCeEEEEeccCCCceeEE
Q 001387 840 N-QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTR-GDFIVV--GDLMKSISLLIYKHEEGAIEERARDYNANWMSA 915 (1088)
Q Consensus 840 g-~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~-~~~I~v--gD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~ 915 (1088)
. +.+++|+....+.....+.................. ++.+.+ |+....+.+ |+........... ....+..
T Consensus 170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l--wd~~~~~~~~~~~--~~~~v~~ 245 (318)
T 4ggc_A 170 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI--WNVCSGACLSAVD--AHSQVCS 245 (318)
T ss_dssp TTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEE--EETTTCCEEEEEE--CSSCEEE
T ss_pred cCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEE--Eeccccccccccc--ceeeeee
Confidence 3 678887753111000011111111111222221112 334433 333334433 5554444333322 3334555
Q ss_pred EEEeeCc-eE-EE-EccCCcEEEEeeCCCCCCcccccceeEEEEEEcCCccceEEeeeeeecCCCCCCCCccEEEEEccc
Q 001387 916 VEILDDD-IY-LG-AENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVN 992 (1088)
Q Consensus 916 ~~~l~~~-~~-l~-~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~~l~~t~~ 992 (1088)
+.+...+ .+ ++ +..+|.+.+++.... ++...-.-| .+.|+++.- . .....++.|+.|
T Consensus 246 ~~~~~~~~~~~~~sg~~d~~i~iwd~~~~--------~~~~~l~gH-~~~V~~l~~---s--------pdg~~l~S~s~D 305 (318)
T 4ggc_A 246 ILWSPHYKELISGHGFAQNQLVIWKYPTM--------AKVAELKGH-TSRVLSLTM---S--------PDGATVASAAAD 305 (318)
T ss_dssp EEEETTTTEEEEEECTTTCCEEEEETTTC--------CEEEEECCC-SSCEEEEEE---C--------TTSSCEEEEETT
T ss_pred eeecccccceEEEEEcCCCEEEEEECCCC--------cEEEEEcCC-CCCEEEEEE---c--------CCCCEEEEEecC
Confidence 5555544 33 33 457899999986431 122222223 245655532 1 134567888999
Q ss_pred ccEEEE
Q 001387 993 GVIGVI 998 (1088)
Q Consensus 993 G~i~~l 998 (1088)
|.|-.-
T Consensus 306 ~~v~iW 311 (318)
T 4ggc_A 306 ETLRLW 311 (318)
T ss_dssp TEEEEE
T ss_pred CeEEEE
Confidence 998653
No 139
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=94.35 E-value=6.3 Score=41.74 Aligned_cols=224 Identities=11% Similarity=0.075 Sum_probs=117.8
Q ss_pred CCeEEEEEEcCCCCeEEEEEeC-CCccCeEEEecC--CCEEEEEEeecCCCcCcceeEEEEEEeCCCce--EEEEEECCC
Q 001387 690 EGELTIGTIDDIQKLHIRSIPL-GEHPRRICHQEQ--SRTFAICSLKNQSCAEESEMHFVRLLDDQTFE--FISTYPLDT 764 (1088)
Q Consensus 690 ~~~l~i~~l~~~~~~~~~~i~l-~~tp~~i~y~~~--~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~--~i~~~~~~~ 764 (1088)
++.+++-.++....-..+.+.- ......+.+.+. .+.++.++.+ ..|++.|..+.+ .+..+.. .
T Consensus 30 D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D----------~~v~iWd~~~~~~~~~~~~~~-h 98 (297)
T 2pm7_B 30 DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD----------GKVMIWKEENGRWSQIAVHAV-H 98 (297)
T ss_dssp TSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT----------TEEEEEEBSSSCBCCCEEECC-C
T ss_pred CCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC----------CEEEEEEcCCCceEEEEEeec-C
Confidence 6778887776432112233321 234566777543 3444444332 478888876543 2222221 1
Q ss_pred CceEeEEEEEEEcCC-CceEEEEEeeeeCCCCCCCcceEEEEEEEeCC-eEEEEEEEEecCceeEecccc----------
Q 001387 765 FEYGCSILSCSFSDD-SNVYYCVGTAYVLPEENEPTKGRILVFIVEDG-KLQLIAEKETKGAVYSLNAFN---------- 832 (1088)
Q Consensus 765 ~E~v~si~~~~~~~~-~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~-kl~~~~~~~~~g~v~ai~~~~---------- 832 (1088)
...+.++ .+..+ ...+++.|+ ..|.+.+|++... ..+........++|++++--.
T Consensus 99 ~~~v~~v---~~~p~~~g~~l~s~s----------~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~ 165 (297)
T 2pm7_B 99 SASVNSV---QWAPHEYGPMLLVAS----------SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN 165 (297)
T ss_dssp SSCEEEE---EECCGGGCSEEEEEE----------TTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC--------
T ss_pred CCceeEE---EeCcCCCCcEEEEEE----------CCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCC
Confidence 2334444 34332 246788776 3478999988743 222222234567777775332
Q ss_pred ----C-eEEEEE-CCEEEEEEeeeccCcccccccccccccce-EEEEEEEe-----CCEEEEEeccccEEEEEEeccCC-
Q 001387 833 ----G-KLLAAI-NQKIQLYKWMLRDDGTRELQSECGHHGHI-LALYVQTR-----GDFIVVGDLMKSISLLIYKHEEG- 899 (1088)
Q Consensus 833 ----g-~Lv~~~-g~~l~v~~~~~~~~~~~~L~~~~~~~~~~-~~~~l~~~-----~~~I~vgD~~~Sv~~~~~~~~~~- 899 (1088)
+ +|+.|. .++|++|++.. +.........+..+. .+.++... +++++.|..-..+.++..+....
T Consensus 166 ~~~~~~~l~sgs~D~~v~lwd~~~---~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 166 GTKESRKFVTGGADNLVKIWKYNS---DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp ----CCEEEEEETTSCEEEEEEET---TTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred CCCCcceEEEEcCCCcEEEEEEcC---CCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence 2 344433 46899988641 211111111112221 23444433 25778888888888765543221
Q ss_pred -eEEEEeccCCCceeEEEEEeeCc-eEEEEccCCcEEEEeeCC
Q 001387 900 -AIEERARDYNANWMSAVEILDDD-IYLGAENNFNLFTVRKNS 940 (1088)
Q Consensus 900 -~l~~~~~D~~~~~v~~~~~l~~~-~~l~~D~~gnl~~l~~~~ 940 (1088)
....+.....+.++.++.+-.++ .++.+..+|.+.+++.+.
T Consensus 243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 22233223345677778776554 466777899999998764
No 140
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=94.31 E-value=0.56 Score=52.35 Aligned_cols=197 Identities=12% Similarity=0.087 Sum_probs=111.3
Q ss_pred CeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEE--CCCC--ceEeEEEEEEEcCCCceEEEEEeeee
Q 001387 716 RRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYP--LDTF--EYGCSILSCSFSDDSNVYYCVGTAYV 791 (1088)
Q Consensus 716 ~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~--~~~~--E~v~si~~~~~~~~~~~~i~VGT~~~ 791 (1088)
..+.+.|..+..++.++.. ..+++.|..+.+.+..+. +..+ ..+.++ .+...+..+++.|.
T Consensus 161 ~~~~~~~~~~~~l~s~s~D---------~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~---~~~~~~~~~l~sgs--- 225 (380)
T 3iz6_a 161 SSCQYVPDQETRLITGSGD---------QTCVLWDVTTGQRISIFGSEFPSGHTADVLSL---SINSLNANMFISGS--- 225 (380)
T ss_dssp CCCBCCSSSSSCEEEECTT---------SCEEEECTTTCCEEEEECCCSSSSCCSCEEEE---EECSSSCCEEEEEE---
T ss_pred EEEEEecCCCCEEEEECCC---------CcEEEEEcCCCcEEEEeecccCCCCccCeEEE---EeecCCCCEEEEEE---
Confidence 3455666544434444332 579999998888777663 2222 223433 34333456777775
Q ss_pred CCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cCeEEEEEC--CEEEEEEeeeccCcccccccccc---c-
Q 001387 792 LPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAIN--QKIQLYKWMLRDDGTRELQSECG---H- 864 (1088)
Q Consensus 792 ~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g~Lv~~~g--~~l~v~~~~~~~~~~~~L~~~~~---~- 864 (1088)
..|.|.+|++....-.+..-..+.++|++++-. +|..+++.+ .++++|++. .+ ..+..... .
T Consensus 226 -------~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~---~~-~~~~~~~~~~~~~ 294 (380)
T 3iz6_a 226 -------CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR---TG-HQLQVYNREPDRN 294 (380)
T ss_dssp -------TTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETT---TT-EEEEEECCCCSSS
T ss_pred -------CCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECC---CC-cEEEEeccccccc
Confidence 347899998862211111123467899998865 455554444 678887752 11 11111000 0
Q ss_pred c---cceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeE-EEEec--cCCCceeEEEEEeeCce-EEEEccCCcEEEEe
Q 001387 865 H---GHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAI-EERAR--DYNANWMSAVEILDDDI-YLGAENNFNLFTVR 937 (1088)
Q Consensus 865 ~---~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l-~~~~~--D~~~~~v~~~~~l~~~~-~l~~D~~gnl~~l~ 937 (1088)
. .....+.....++++++|..-..+.+ |+....+. ..+.. ..+...++++.+-.++. ++.+..+|.+.++.
T Consensus 295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~v--wd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~ 372 (380)
T 3iz6_a 295 DNELPIVTSVAFSISGRLLFAGYSNGDCYV--WDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWA 372 (380)
T ss_dssp CCSSCSCSEEEECSSSSEEEEECTTSCEEE--EETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred ccccCceEEEEECCCCCEEEEEECCCCEEE--EECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence 0 01223444456889999988887766 55443333 23322 33455677777766654 56788899999998
Q ss_pred eCC
Q 001387 938 KNS 940 (1088)
Q Consensus 938 ~~~ 940 (1088)
...
T Consensus 373 ~~~ 375 (380)
T 3iz6_a 373 FSG 375 (380)
T ss_dssp CCS
T ss_pred cCC
Confidence 753
No 141
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=93.91 E-value=7.9 Score=41.27 Aligned_cols=262 Identities=12% Similarity=0.024 Sum_probs=131.8
Q ss_pred EEEEECCCeEEEEEEcCcEEEEEeeccCCc---eeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCC
Q 001387 501 VLLATGGGHLVYLEIGDGILTEVKHAQLEY---EISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLG 577 (1088)
Q Consensus 501 lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~---~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~ 577 (1088)
++....++.+..+....++... ...+.. .+.++++.+ ....++++...++.|.+|++.+.+.+.....+
T Consensus 4 ~v~~~~~~~v~~~d~~~~~~~~--~~~~~~~~~~~~~~~~s~------dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~ 75 (337)
T 1pby_B 4 ILAPARPDKLVVIDTEKMAVDK--VITIADAGPTPMVPMVAP------GGRIAYATVNKSESLVKIDLVTGETLGRIDLS 75 (337)
T ss_dssp EEEEETTTEEEEEETTTTEEEE--EEECTTCTTCCCCEEECT------TSSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred EEEcCCCCeEEEEECCCCcEEE--EEEcCCCCCCccceEEcC------CCCEEEEEeCCCCeEEEEECCCCCeEeeEEcC
Confidence 3444456677776665554332 233444 467777764 24567776666789999999876665433332
Q ss_pred C----CcCceeEEeeeecCceEEEEEe------------CCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCce
Q 001387 578 G----EIIPRSVLLCAFEGISYLLCAL------------GDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTT 641 (1088)
Q Consensus 578 ~----~~~p~si~~~~~~~~~~L~vgl------------~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~ 641 (1088)
. ...|.++.+.+ +..+|+++. .+|.+..|... +++. .+....|..|..+. +. .+..
T Consensus 76 ~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~--~~~~--~~~~~~~~~~~~~~-~s-~dg~ 147 (337)
T 1pby_B 76 TPEERVKSLFGAALSP--DGKTLAIYESPVRLELTHFEVQPTRVALYDAE--TLSR--RKAFEAPRQITMLA-WA-RDGS 147 (337)
T ss_dssp BTTEEEECTTCEEECT--TSSEEEEEEEEEEECSSCEEECCCEEEEEETT--TTEE--EEEEECCSSCCCEE-EC-TTSS
T ss_pred CcccccccccceEECC--CCCEEEEEecccccccccccccCceEEEEECC--CCcE--EEEEeCCCCcceeE-EC-CCCC
Confidence 1 01455665443 334677765 46877776643 2222 12233454444332 32 2334
Q ss_pred EEEEecCCceEEEecCCcEE-Eeeccc--ccceeeeccCCCCCCCeEEEEe--CC-----------------------eE
Q 001387 642 HVFAASDRPTVIYSSNKKLL-YSNVNL--KEVSHMCPFNSAAFPDSLAIAK--EG-----------------------EL 693 (1088)
Q Consensus 642 ~v~~~~~~p~~i~~~~~~~~-~~~l~~--~~i~~~~~f~~~~~~~~l~~~~--~~-----------------------~l 693 (1088)
.+++.+...+++-...++.. ..+... .++ .+.|= ...++... ++ .+
T Consensus 148 ~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~-~~s~d-----g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 221 (337)
T 1pby_B 148 KLYGLGRDLHVMDPEAGTLVEDKPIQSWEAET-YAQPD-----VLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL 221 (337)
T ss_dssp CEEEESSSEEEEETTTTEEEEEECSTTTTTTT-BCCCB-----CCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEE
T ss_pred EEEEeCCeEEEEECCCCcEeeeeeccccCCCc-eeCCC-----ccEEeeeccCCCceeeeeeccccccccccccccccce
Confidence 45555433333333333332 111111 111 11110 00111111 01 23
Q ss_pred EEEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEE
Q 001387 694 TIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILS 773 (1088)
Q Consensus 694 ~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~ 773 (1088)
.+..+..........-+....|..++++|+.+.++++ . ..|.++|..+++.+..+... ..+.++
T Consensus 222 ~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~----------~~v~~~d~~~~~~~~~~~~~--~~~~~~-- 285 (337)
T 1pby_B 222 LTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--Y----------NVLESFDLEKNASIKRVPLP--HSYYSV-- 285 (337)
T ss_dssp EEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--E----------SEEEEEETTTTEEEEEEECS--SCCCEE--
T ss_pred EEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--C----------CeEEEEECCCCcCcceecCC--CceeeE--
Confidence 3333332221111111223456778999988877666 1 47899999999988877754 334444
Q ss_pred EEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCe
Q 001387 774 CSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGK 812 (1088)
Q Consensus 774 ~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~k 812 (1088)
.+..++ ++++++. ..|.|.+|++..++
T Consensus 286 -~~s~dg-~~l~~~~----------~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 286 -NVSTDG-STVWLGG----------ALGDLAAYDAETLE 312 (337)
T ss_dssp -EECTTS-CEEEEES----------BSSEEEEEETTTCC
T ss_pred -EECCCC-CEEEEEc----------CCCcEEEEECcCCc
Confidence 344333 4566653 23789999876544
No 142
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=93.63 E-value=8 Score=40.39 Aligned_cols=166 Identities=10% Similarity=-0.019 Sum_probs=96.9
Q ss_pred EEEEEeCCCc--cCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCce
Q 001387 705 HIRSIPLGEH--PRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 782 (1088)
Q Consensus 705 ~~~~i~l~~t--p~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~ 782 (1088)
.++++|.+.. |+-++|+++ +.+.+++... ..+.|..+|+.|++++.++.++++.....+... ++
T Consensus 11 vv~~~p~~~~~f~~Gl~~~~d-g~Lyvstg~~-------~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~-----g~- 76 (266)
T 2iwa_A 11 VLNEFPHDPYAFTQGLVYAEN-DTLFESTGLY-------GRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL-----NE- 76 (266)
T ss_dssp EEEEEECCTTCCEEEEEECST-TEEEEEECST-------TTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-----TT-
T ss_pred EEEEEECCCCCCcccEEEeCC-CeEEEECCCC-------CCCEEEEEECCCCCEEEEEecCCCcceEEEEEe-----CC-
Confidence 5788999864 689999987 4555554321 247899999999999999999887666554432 23
Q ss_pred EEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEec-CceeEeccccCeEEEEEC-CEEEEEEeeeccCccccccc
Q 001387 783 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETK-GAVYSLNAFNGKLLAAIN-QKIQLYKWMLRDDGTRELQS 860 (1088)
Q Consensus 783 ~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~-g~v~ai~~~~g~Lv~~~g-~~l~v~~~~~~~~~~~~L~~ 860 (1088)
.+.+++- ..|++.+++.. .++++....+. +.-..++.-+++|+++.| ++|.+ ++... .+.+..
T Consensus 77 ~lyv~t~---------~~~~v~viD~~--t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~v--iD~~t--~~v~~~ 141 (266)
T 2iwa_A 77 KLYQVVW---------LKNIGFIYDRR--TLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYE--IDPHT--FKLIKK 141 (266)
T ss_dssp EEEEEET---------TCSEEEEEETT--TTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEE--ECTTT--CCEEEE
T ss_pred EEEEEEe---------cCCEEEEEECC--CCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEE--EECCC--CcEEEE
Confidence 4555542 45788887754 34555555554 444567765667888877 44544 43221 111111
Q ss_pred ccc-cccce--EEEEEEEeCCEEEEEeccccEEEEEEeccCCe
Q 001387 861 ECG-HHGHI--LALYVQTRGDFIVVGDLMKSISLLIYKHEEGA 900 (1088)
Q Consensus 861 ~~~-~~~~~--~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~ 900 (1088)
..- ..... .+-.+...+.++++...... .+...+....+
T Consensus 142 I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~-~V~vID~~tg~ 183 (266)
T 2iwa_A 142 HNVKYNGHRVIRLNELEYINGEVWANIWQTD-CIARISAKDGT 183 (266)
T ss_dssp EECEETTEECCCEEEEEEETTEEEEEETTSS-EEEEEETTTCC
T ss_pred EEECCCCcccccceeEEEECCEEEEecCCCC-eEEEEECCCCc
Confidence 110 00011 12344444668887775433 34456765554
No 143
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=93.18 E-value=26 Score=44.97 Aligned_cols=191 Identities=8% Similarity=-0.021 Sum_probs=112.2
Q ss_pred CCEEEEEEeecCCCcCcceeEEEEEEeC--CCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcce
Q 001387 724 SRTFAICSLKNQSCAEESEMHFVRLLDD--QTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKG 801 (1088)
Q Consensus 724 ~~~~~v~~~~~~~~~~~~~~s~l~lid~--~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~G 801 (1088)
...++|+|....+.+++..++.|.+++- ...+.+...+. ...+++++.+ . .++++|-+ .
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v--~g~v~al~~~--~----g~Lla~ig-----------~ 904 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEV--KGAVYSMVEF--N----GKLLASIN-----------S 904 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEE--SSCEEEEEEE--T----TEEEEEET-----------T
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEc--CCcCEEEeee--C----CEEEEEcC-----------C
Confidence 3577788876543344446788887764 34455555555 4567887765 2 37887764 3
Q ss_pred EEEEEEEeCCe-EEEEEEEEecCc--eeEeccccCeEEEEEC-CEEEEEEeeeccCcccccccccccccceEEEEEEE-e
Q 001387 802 RILVFIVEDGK-LQLIAEKETKGA--VYSLNAFNGKLLAAIN-QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQT-R 876 (1088)
Q Consensus 802 ri~v~~i~~~k-l~~~~~~~~~g~--v~ai~~~~g~Lv~~~g-~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~-~ 876 (1088)
.+++|++.+++ |+ .+...-.. +..+...++++++|-- +.+.++.|+.. ..+|...+.-..+..++++.. .
T Consensus 905 ~l~vy~l~~~~~L~--~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~---~~~L~~~a~D~~~~~vta~~~ld 979 (1158)
T 3ei3_A 905 TVRLYEWTTEKELR--TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPM---EGNFEEIARDFNPNWMSAVEILD 979 (1158)
T ss_dssp EEEEEEECTTSCEE--EEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETT---TTEEEEEEECCSCBCEEEEEEEE
T ss_pred EEEEEECCCCceEE--EEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcC---CCeEEEEEeecccccEEEEEEEc
Confidence 78899998554 55 22222222 3366677888888755 45777777532 234544432112223344333 4
Q ss_pred CCEEEEEeccccEEEEEEeccC------CeEEEEeccCCCceeEEEEE--ee-----------CceEEEEccCCcEEEEe
Q 001387 877 GDFIVVGDLMKSISLLIYKHEE------GAIEERARDYNANWMSAVEI--LD-----------DDIYLGAENNFNLFTVR 937 (1088)
Q Consensus 877 ~~~I~vgD~~~Sv~~~~~~~~~------~~l~~~~~D~~~~~v~~~~~--l~-----------~~~~l~~D~~gnl~~l~ 937 (1088)
.+.++++|....+++++|+++. .+|...|.=...-.+++... +. ...++.+-.+|.|..+-
T Consensus 980 ~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~ 1059 (1158)
T 3ei3_A 980 DDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVT 1059 (1158)
T ss_dssp TTEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEE
T ss_pred cCcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEE
Confidence 6799999999999999998742 45666553322333333321 11 12356666788887775
Q ss_pred e
Q 001387 938 K 938 (1088)
Q Consensus 938 ~ 938 (1088)
.
T Consensus 1060 p 1060 (1158)
T 3ei3_A 1060 S 1060 (1158)
T ss_dssp E
T ss_pred E
Confidence 4
No 144
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=93.14 E-value=13 Score=41.54 Aligned_cols=217 Identities=11% Similarity=0.084 Sum_probs=111.9
Q ss_pred CeEEEEEEcCCCCeEEEEEe-CCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEe
Q 001387 691 GELTIGTIDDIQKLHIRSIP-LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGC 769 (1088)
Q Consensus 691 ~~l~i~~l~~~~~~~~~~i~-l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~ 769 (1088)
+.+.+..++... .+.+. -...+..++++|+.+.++.++.+. ....|+++|..+.+...-...+ ..+.
T Consensus 159 ~~i~i~d~~g~~---~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-------~~~~i~~~d~~tg~~~~l~~~~--~~~~ 226 (415)
T 2hqs_A 159 YELRVSDYDGYN---QFVVHRSPQPLMSPAWSPDGSKLAYVTFES-------GRSALVIQTLANGAVRQVASFP--RHNG 226 (415)
T ss_dssp EEEEEEETTSCS---CEEEEEESSCEEEEEECTTSSEEEEEECTT-------SSCEEEEEETTTCCEEEEECCS--SCEE
T ss_pred ceEEEEcCCCCC---CEEEeCCCCcceeeEEcCCCCEEEEEEecC-------CCcEEEEEECCCCcEEEeecCC--Cccc
Confidence 356665554322 12221 234566788999988877776432 2368999999887764322222 2333
Q ss_pred EEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cC-eEEEEEC--CEEEE
Q 001387 770 SILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NG-KLLAAIN--QKIQL 845 (1088)
Q Consensus 770 si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g-~Lv~~~g--~~l~v 845 (1088)
+ +.+..+++.+++.+.. .....|+++++..++++.+. ...+.+.+++-- +| +|+++.+ ....+
T Consensus 227 ~---~~~spdg~~la~~~~~--------~g~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~spdg~~l~~~s~~~g~~~i 293 (415)
T 2hqs_A 227 A---PAFSPDGSKLAFALSK--------TGSLNLYVMDLASGQIRQVT--DGRSNNTEPTWFPDSQNLAFTSDQAGRPQV 293 (415)
T ss_dssp E---EEECTTSSEEEEEECT--------TSSCEEEEEETTTCCEEECC--CCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred C---EEEcCCCCEEEEEEec--------CCCceEEEEECCCCCEEeCc--CCCCcccceEECCCCCEEEEEECCCCCcEE
Confidence 3 3445444443334431 12457999988766654332 345667776533 44 4666654 32334
Q ss_pred EEeeeccCcccccccccccccceEEEEEEEeCCEEEEEecccc-EEEEEEeccCCeEEEEeccCCCceeEEEEEeeCce-
Q 001387 846 YKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKS-ISLLIYKHEEGAIEERARDYNANWMSAVEILDDDI- 923 (1088)
Q Consensus 846 ~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~S-v~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~- 923 (1088)
|.|+.. .++ ................+..|++|+++....+ ..+..|+.+..+...+.... .+.+..+-.++.
T Consensus 294 ~~~d~~-~~~--~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~---~~~~~~~spdg~~ 367 (415)
T 2hqs_A 294 YKVNIN-GGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF---LDETPSLAPNGTM 367 (415)
T ss_dssp EEEETT-SSC--CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS---SCEEEEECTTSSE
T ss_pred EEEECC-CCC--EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC---CcCCeEEcCCCCE
Confidence 444322 222 2221111112222333345778887766533 45666787766666554432 566666665554
Q ss_pred EE-EEccCC--cEEEEee
Q 001387 924 YL-GAENNF--NLFTVRK 938 (1088)
Q Consensus 924 ~l-~~D~~g--nl~~l~~ 938 (1088)
++ +++..+ .|+++..
T Consensus 368 l~~~s~~~~~~~l~~~d~ 385 (415)
T 2hqs_A 368 VIYSSSQGMGSVLNLVST 385 (415)
T ss_dssp EEEEEEETTEEEEEEEET
T ss_pred EEEEEcCCCccEEEEEEC
Confidence 33 343344 4555543
No 145
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=93.00 E-value=8.2 Score=43.49 Aligned_cols=196 Identities=11% Similarity=0.046 Sum_probs=100.1
Q ss_pred ccEEEEEEec-CCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccc--eee
Q 001387 547 SQIAAVGMWT-DISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDR--KKV 623 (1088)
Q Consensus 547 ~~~~~vg~w~-~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~--~~~ 623 (1088)
..++.|+.+. ++++.++++.+.+.+..-.++ ....+..-+ ...++....||.++.... . ++.+... ...
T Consensus 188 Gk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~-----g~~~~~p~g-~~~~v~~~~dG~~~~V~~-~-~~~v~~~~~~~~ 259 (426)
T 3c75_H 188 NKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP-----DCYHIFPAS-PTVFYMNCRDGSLARVDF-A-DGETKVTNTEVF 259 (426)
T ss_dssp SSEEEEEECSSSCEEEEEETTTTEEEEEEECC-----SEEEEEEEE-TTEEEEEETTSSEEEEEC-C-TTCCEEEECCCC
T ss_pred CCEEEEEecCCCCeEEEEECCCCeEEEEEEcC-----CceeeccCC-CcEEEEEcCCCCEEEEEC-C-CCcEEEEeeeee
Confidence 6788888774 689999999887776544333 122222222 234445667888877666 2 2332211 123
Q ss_pred ecCccceeEEE-EEeCCceEEEEecCCce--EEEecCCcEEEe-eccc---ccc-eeeeccCC--CC-CCC-eEEEEe-C
Q 001387 624 SLGTQPITLRT-FSSKNTTHVFAASDRPT--VIYSSNKKLLYS-NVNL---KEV-SHMCPFNS--AA-FPD-SLAIAK-E 690 (1088)
Q Consensus 624 ~lG~~pv~l~~-~~~~~~~~v~~~~~~p~--~i~~~~~~~~~~-~l~~---~~i-~~~~~f~~--~~-~~~-~l~~~~-~ 690 (1088)
..+..|+.... +. .+...++....... ++....+...+. +... ..+ ....|... -. .++ .-+|+. .
T Consensus 260 ~v~~~p~~~~~~~~-~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~ 338 (426)
T 3c75_H 260 HTEDELLINHPAFS-LRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVD 338 (426)
T ss_dssp SCTTSCBCSCCEEC-TTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEE
T ss_pred ccCCCceeeEeeec-CCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEec
Confidence 34555543211 21 12223333332222 222212222111 0000 000 00111100 00 011 122222 1
Q ss_pred ---------CeEEEEEEcCCCCeEEEEEeCCCccCeEEEecCCC-EEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEE
Q 001387 691 ---------GELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSR-TFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTY 760 (1088)
Q Consensus 691 ---------~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~-~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~ 760 (1088)
..=.+.-+|....-.+++|+++..|..+++.|+.+ .+++..... ..|.+||..+++++.++
T Consensus 339 ~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s---------~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 339 QRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGT---------QTLHIYDAATGEELRSV 409 (426)
T ss_dssp ECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTT---------TEEEEEETTTCCEEEEE
T ss_pred ccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCC---------CeEEEEECCCCCEEEEe
Confidence 12235556665566889999999999999999998 666554322 57999999999999886
No 146
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=92.53 E-value=15 Score=40.58 Aligned_cols=63 Identities=8% Similarity=0.028 Sum_probs=47.7
Q ss_pred EEEEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECC
Q 001387 693 LTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD 763 (1088)
Q Consensus 693 l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~ 763 (1088)
=.+.-++....-.+++|+++..|..++++++.+..++.+... ...|.++|..+.+.+.+++..
T Consensus 311 ~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~--------~~~VsViD~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 311 RFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTG--------DKTLYIHDAESGEELRSVNQL 373 (386)
T ss_dssp EEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETT--------TTEEEEEETTTCCEEEEECCC
T ss_pred CEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCC--------CCeEEEEECCCCcEEEEecCC
Confidence 456666666666889999999999999999987333333321 257889999999999988765
No 147
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=92.45 E-value=12 Score=39.10 Aligned_cols=194 Identities=12% Similarity=0.112 Sum_probs=97.6
Q ss_pred ccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCC-----CceEeEEEEEEEcCCCceEEEEEe
Q 001387 714 HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDT-----FEYGCSILSCSFSDDSNVYYCVGT 788 (1088)
Q Consensus 714 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~-----~E~v~si~~~~~~~~~~~~i~VGT 788 (1088)
.|..++++++.+.|+.... ...|..+|+. .+.+..+.... ...+.++ .+...+..+++.+.
T Consensus 31 ~p~~v~~~~~g~l~v~~~~----------~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i---~~~~~~g~l~v~~~ 96 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVADTN----------NHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRV---AVVRNSGDIIVTER 96 (286)
T ss_dssp CEEEEEECTTCCEEEEEGG----------GTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEE---EEETTTTEEEEEEC
T ss_pred CCceEEECCCCCEEEEECC----------CCEEEEECCC-CcEEEEecccCCCcccccCceEE---EEEcCCCeEEEEcC
Confidence 5778888887775554322 2468888876 55555543211 1234443 34222334443332
Q ss_pred eeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cCeEEEEE--CCEEEEEEeeeccCcccccccccccc
Q 001387 789 AYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAI--NQKIQLYKWMLRDDGTRELQSECGHH 865 (1088)
Q Consensus 789 ~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g~Lv~~~--g~~l~v~~~~~~~~~~~~L~~~~~~~ 865 (1088)
. ..++|++|+ .++++...........+.+|+.- +|+|+++. ++.|++|+. ++. .+.......
T Consensus 97 ~---------~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~----~g~-~~~~~~~~~ 161 (286)
T 1q7f_A 97 S---------PTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ----NGN-VLHKFGCSK 161 (286)
T ss_dssp G---------GGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT----TSC-EEEEEECTT
T ss_pred C---------CCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC----CCC-EEEEeCCCC
Confidence 1 246888887 33332211111112345666543 57788775 356776552 221 121111001
Q ss_pred cceEEEEEEEe-CCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCceEEEEccCC--cEEEEe
Q 001387 866 GHILALYVQTR-GDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNF--NLFTVR 937 (1088)
Q Consensus 866 ~~~~~~~l~~~-~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l~~D~~g--nl~~l~ 937 (1088)
....+..+... ++.++++|...+- +..|+.+...+..+..+.......++.+-.++.++++|... .|.++.
T Consensus 162 ~~~~p~~i~~~~~g~l~v~~~~~~~-i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~ 235 (286)
T 1q7f_A 162 HLEFPNGVVVNDKQEIFISDNRAHC-VKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT 235 (286)
T ss_dssp TCSSEEEEEECSSSEEEEEEGGGTE-EEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred ccCCcEEEEECCCCCEEEEECCCCE-EEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEEC
Confidence 11234455544 3468899876543 34577766666666544222344555544456777777643 577765
No 148
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=92.36 E-value=12 Score=39.36 Aligned_cols=100 Identities=8% Similarity=-0.028 Sum_probs=54.4
Q ss_pred CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeC
Q 001387 713 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVL 792 (1088)
Q Consensus 713 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~ 792 (1088)
..|..++++|+.+.++++... ...|..+|+.+. ...+... ...+.++. +..+++ +.|++.
T Consensus 28 ~~~eg~~~d~~g~~l~~~~~~---------~~~i~~~~~~~~--~~~~~~~-~~~~~~l~---~~~dg~--l~v~~~--- 87 (296)
T 3e5z_A 28 TWTEGPVYVPARSAVIFSDVR---------QNRTWAWSDDGQ--LSPEMHP-SHHQNGHC---LNKQGH--LIACSH--- 87 (296)
T ss_dssp SSEEEEEEEGGGTEEEEEEGG---------GTEEEEEETTSC--EEEEESS-CSSEEEEE---ECTTCC--EEEEET---
T ss_pred ccccCCeEeCCCCEEEEEeCC---------CCEEEEEECCCC--eEEEECC-CCCcceee---ECCCCc--EEEEec---
Confidence 357788999998844444332 246888898775 4444443 23344443 443333 444542
Q ss_pred CCCCCCcceEEEEEEEeCCeEEEEEEEEe---cCceeEeccc-cCeEEEE
Q 001387 793 PEENEPTKGRILVFIVEDGKLQLIAEKET---KGAVYSLNAF-NGKLLAA 838 (1088)
Q Consensus 793 ~~e~~~~~Gri~v~~i~~~kl~~~~~~~~---~g~v~ai~~~-~g~Lv~~ 838 (1088)
..++|++|+...++++.+..... ...+..++.- +|+|+++
T Consensus 88 ------~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vt 131 (296)
T 3e5z_A 88 ------GLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFS 131 (296)
T ss_dssp ------TTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEE
T ss_pred ------CCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEE
Confidence 23578888776666665432211 1123334332 6788875
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=91.15 E-value=11 Score=39.09 Aligned_cols=191 Identities=10% Similarity=0.031 Sum_probs=91.6
Q ss_pred eEEEEeCCeEEEEEEcC-CCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEEC
Q 001387 684 SLAIAKEGELTIGTIDD-IQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPL 762 (1088)
Q Consensus 684 ~l~~~~~~~l~i~~l~~-~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~ 762 (1088)
.+++..++.+.+..+.. ........-+-...+..+.++|+.+.++++.... .....|..++..+.+. ..+
T Consensus 55 ~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~------~~~~~l~~~~~~~~~~---~~~ 125 (297)
T 2ojh_A 55 YLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVE------FGKSAIYLLPSTGGTP---RLM 125 (297)
T ss_dssp EEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTT------TSSCEEEEEETTCCCC---EEC
T ss_pred EEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCC------CCcceEEEEECCCCce---EEe
Confidence 35555566777766655 3221111111113456788999988777765321 1235677777655442 233
Q ss_pred CCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEe--CCeEEEEEEEEecCceeEeccc-cC-eEEEE
Q 001387 763 DTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE--DGKLQLIAEKETKGAVYSLNAF-NG-KLLAA 838 (1088)
Q Consensus 763 ~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~--~~kl~~~~~~~~~g~v~ai~~~-~g-~Lv~~ 838 (1088)
...+.+.++ .+..+++.+++.+.. .|.+.+|.+. .++.+.+ ....+.+.+++-- +| +|+++
T Consensus 126 ~~~~~~~~~---~~spdg~~l~~~~~~----------~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~~~ 190 (297)
T 2ojh_A 126 TKNLPSYWH---GWSPDGKSFTYCGIR----------DQVFDIYSMDIDSGVETRL--THGEGRNDGPDYSPDGRWIYFN 190 (297)
T ss_dssp CSSSSEEEE---EECTTSSEEEEEEEE----------TTEEEEEEEETTTCCEEEC--CCSSSCEEEEEECTTSSEEEEE
T ss_pred ecCCCccce---EECCCCCEEEEEECC----------CCceEEEEEECCCCcceEc--ccCCCccccceECCCCCEEEEE
Confidence 334444433 344444444334432 2445666654 3444322 2334566666533 34 45555
Q ss_pred E--CCEEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEEEEecc---------ccEEEEEEeccCCeE
Q 001387 839 I--NQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLM---------KSISLLIYKHEEGAI 901 (1088)
Q Consensus 839 ~--g~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~---------~Sv~~~~~~~~~~~l 901 (1088)
. +..+.+|.++... .++............+..+..+++++++... ..-.++.|+.+..+.
T Consensus 191 ~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 191 SSRTGQMQIWRVRVDG---SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp ECTTSSCEEEEEETTS---SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred ecCCCCccEEEECCCC---CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 4 4567777764221 1222221111112222333346677776654 224455666655443
No 150
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=91.01 E-value=18 Score=38.44 Aligned_cols=118 Identities=14% Similarity=0.093 Sum_probs=73.4
Q ss_pred CcEEEEEEC--CCEEEEEECCCeEEEEEEcCcEEEEEee-ccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEEC
Q 001387 489 YSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKH-AQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL 565 (1088)
Q Consensus 489 ~~I~~a~~~--~~~lvv~~~~~~l~~~~~~~~~l~~~~~-~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l 565 (1088)
..|.+.+.+ +..++.+..++.+.+.++..++...+.. ..-...|.++++.+-. ...+++.|.+ |+.+++|++
T Consensus 14 ~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~----~~~~l~s~s~-D~~v~iWd~ 88 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM----YGNILASCSY-DRKVIIWRE 88 (316)
T ss_dssp CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGG----GSSCEEEEET-TSCEEEECC
T ss_pred CeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCC----CCCEEEEEEC-CCEEEEEEC
Confidence 457777765 4566666677888887876643222211 1235679999985310 1457777777 999999998
Q ss_pred CCCC--ceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEec
Q 001387 566 PDLN--LITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNM 612 (1088)
Q Consensus 566 ~~l~--~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~ 612 (1088)
.+.+ ..... ........++.+.+-+...+|..|..||.+..|.+..
T Consensus 89 ~~~~~~~~~~~-~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~ 136 (316)
T 3bg1_A 89 ENGTWEKSHEH-AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTG 136 (316)
T ss_dssp SSSCCCEEEEE-CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECS
T ss_pred CCCcceEEEEc-cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCC
Confidence 7532 22211 1112344566555422246788999999999998764
No 151
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=90.18 E-value=7.5 Score=45.33 Aligned_cols=189 Identities=12% Similarity=0.097 Sum_probs=106.6
Q ss_pred CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceE---eEEEEEEEcCCCceEEEEEee
Q 001387 713 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYG---CSILSCSFSDDSNVYYCVGTA 789 (1088)
Q Consensus 713 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v---~si~~~~~~~~~~~~i~VGT~ 789 (1088)
..+..++++|+.+.+++++.+ +.+++.|.++ .+.. ++ ++.. .++..+.+.. ...+|++|+
T Consensus 86 ~~V~~vawSPdG~~LAs~s~d----------g~V~iwd~~~--~l~~--l~-~~~~~~~~sv~svafSP-DG~~LAsgs- 148 (588)
T 2j04_A 86 CYPRVCKPSPIDDWMAVLSNN----------GNVSVFKDNK--MLTN--LD-SKGNLSSRTYHCFEWNP-IESSIVVGN- 148 (588)
T ss_dssp CCEEEEEECSSSSCEEEEETT----------SCEEEEETTE--EEEE--CC-CSSCSTTTCEEEEEECS-SSSCEEEEE-
T ss_pred CcEEEEEECCCCCEEEEEeCC----------CcEEEEeCCc--eeee--cc-CCCccccccEEEEEEcC-CCCEEEEEc-
Confidence 456678899999988888754 3578887544 3333 33 3310 1223344544 467889887
Q ss_pred eeCCCCCCCcceEEEEEEEeCCeE---E--EEEEE-----EecCceeEeccccCeEEE-EECCEEEEEEeeeccCcccc-
Q 001387 790 YVLPEENEPTKGRILVFIVEDGKL---Q--LIAEK-----ETKGAVYSLNAFNGKLLA-AINQKIQLYKWMLRDDGTRE- 857 (1088)
Q Consensus 790 ~~~~~e~~~~~Gri~v~~i~~~kl---~--~~~~~-----~~~g~v~ai~~~~g~Lv~-~~g~~l~v~~~~~~~~~~~~- 857 (1088)
..|.|.+|++..+++ + .+... .+.+.|++++-..+.|++ +.++.+++++++ +....+
T Consensus 149 ---------~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~--~~~~~~~ 217 (588)
T 2j04_A 149 ---------EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVS--ASSHQPV 217 (588)
T ss_dssp ---------TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCC--SSSSCCC
T ss_pred ---------CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEEEECC--CCccccc
Confidence 358999999986643 1 22322 234689999766444544 344778887653 111111
Q ss_pred ---cccccccccceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEE--eeCc-eEEEEccCC
Q 001387 858 ---LQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEI--LDDD-IYLGAENNF 931 (1088)
Q Consensus 858 ---L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~--l~~~-~~l~~D~~g 931 (1088)
|.. .....+ .++...|++|+.+- .+.+.+ |+..++++...-.. +...+..+.+ -.+. .++.++.+|
T Consensus 218 ~~tL~~--~h~~~V--~svaFsg~~LASa~-~~tIkL--Wd~~~~~~~~~~~g-h~~~V~~va~~~s~d~~~La~a~edG 289 (588)
T 2j04_A 218 SRMIQN--ASRRKI--TDLKIVDYKVVLTC-PGYVHK--IDLKNYSISSLKTG-SLENFHIIPLNHEKESTILLMSNKTS 289 (588)
T ss_dssp EEEEEC--CCSSCC--CCEEEETTEEEEEC-SSEEEE--EETTTTEEEEEECS-CCSCCCEEEETTCSSCEEEEECSSCE
T ss_pred eeeecc--cccCcE--EEEEEECCEEEEEe-CCeEEE--EECCCCeEEEEEcC-CCceEEEEEeeeCCCCCEEEEEcCCC
Confidence 211 112222 23333377777663 466655 67667777444322 4555666666 3333 367788888
Q ss_pred cEEEEee
Q 001387 932 NLFTVRK 938 (1088)
Q Consensus 932 nl~~l~~ 938 (1088)
. .++..
T Consensus 290 ~-klw~~ 295 (588)
T 2j04_A 290 Y-KVLLE 295 (588)
T ss_dssp E-EEEES
T ss_pred C-EEEee
Confidence 8 55554
No 152
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=90.02 E-value=28 Score=39.02 Aligned_cols=271 Identities=11% Similarity=0.025 Sum_probs=128.6
Q ss_pred CeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEe---------cCCEEEEEECCCCCceEEecCCC
Q 001387 508 GHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMW---------TDISVRIFSLPDLNLITKEHLGG 578 (1088)
Q Consensus 508 ~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w---------~~~~i~i~~l~~l~~~~~~~l~~ 578 (1088)
+.+..+....++ .+.+++..... .+.+++ ....+.|+.+ .++.|.+++..+++.+..-.++.
T Consensus 99 ~~VsVID~~t~~--vv~~I~vG~~P-gia~Sp------Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g 169 (426)
T 3c75_H 99 TQQFVIDGSTGR--ILGMTDGGFLP-HPVAAE------DGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPD 169 (426)
T ss_dssp EEEEEEETTTTE--EEEEEEECSSC-EEEECT------TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT
T ss_pred CeEEEEECCCCE--EEEEEECCCCC-ceEECC------CCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCC
Confidence 355554443333 23334444445 677764 2456667654 36789999988888765544430
Q ss_pred ------CcCceeEEeeeecCceEEEEEeC--CCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEecCCc
Q 001387 579 ------EIIPRSVLLCAFEGISYLLCALG--DGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRP 650 (1088)
Q Consensus 579 ------~~~p~si~~~~~~~~~~L~vgl~--~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p 650 (1088)
...|+.+.+.. +..+|++... ++.+.++ |..++++ .+++.++.. ..+.+- +....+-.+++..
T Consensus 170 ~~r~~~g~~P~~~~~sp--DGk~lyV~n~~~~~~VsVI--D~~t~kv--v~~I~v~g~-~~~~p~--g~~~~v~~~~dG~ 240 (426)
T 3c75_H 170 APRFLVGTYQWMNALTP--DNKNLLFYQFSPAPAVGVV--DLEGKTF--DRMLDVPDC-YHIFPA--SPTVFYMNCRDGS 240 (426)
T ss_dssp CCCCCBSCCGGGSEECT--TSSEEEEEECSSSCEEEEE--ETTTTEE--EEEEECCSE-EEEEEE--ETTEEEEEETTSS
T ss_pred ccccccCCCcceEEEcC--CCCEEEEEecCCCCeEEEE--ECCCCeE--EEEEEcCCc-eeeccC--CCcEEEEEcCCCC
Confidence 12466665553 4467777653 4555554 4443322 223333322 112111 1111122223333
Q ss_pred eEEEe-cCCcEEEe-----ecccccceeeeccCCCCCCCeEEEEe-CCeEEEEEEcCCCCeEEEEEe--------CCCcc
Q 001387 651 TVIYS-SNKKLLYS-----NVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIP--------LGEHP 715 (1088)
Q Consensus 651 ~~i~~-~~~~~~~~-----~l~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~--------l~~tp 715 (1088)
++... ..++.... .+...++....+| ..-++.+++.+ .+.+.+..+.........+++ .+..|
T Consensus 241 ~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~--~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p 318 (426)
T 3c75_H 241 LARVDFADGETKVTNTEVFHTEDELLINHPAF--SLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRP 318 (426)
T ss_dssp EEEEECCTTCCEEEECCCCSCTTSCBCSCCEE--CTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEE
T ss_pred EEEEECCCCcEEEEeeeeeccCCCceeeEeee--cCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccccc
Confidence 22211 12222100 0000000000001 11234566655 455555555433212222222 22334
Q ss_pred Ce---EEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeC
Q 001387 716 RR---ICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVL 792 (1088)
Q Consensus 716 ~~---i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~ 792 (1088)
.. ++++++.+.+.|................|.+||..+++++.++.... .+.++ .+..+++.++++...
T Consensus 319 ~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~--~P~gi---a~spDg~~~lyv~n~--- 390 (426)
T 3c75_H 319 GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH--EIDSI---NVSQDAEPLLYALSA--- 390 (426)
T ss_dssp CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEE---EECCSSSCEEEEEET---
T ss_pred CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC--CcCeE---EEccCCCEEEEEEcC---
Confidence 33 78888877665554321000000124689999999999999887654 34444 345555545555431
Q ss_pred CCCCCCcceEEEEEEEeCCe
Q 001387 793 PEENEPTKGRILVFIVEDGK 812 (1088)
Q Consensus 793 ~~e~~~~~Gri~v~~i~~~k 812 (1088)
..|.|.+++...+|
T Consensus 391 ------~s~~VsVID~~t~k 404 (426)
T 3c75_H 391 ------GTQTLHIYDAATGE 404 (426)
T ss_dssp ------TTTEEEEEETTTCC
T ss_pred ------CCCeEEEEECCCCC
Confidence 35789999876544
No 153
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=89.63 E-value=21 Score=37.04 Aligned_cols=197 Identities=12% Similarity=0.063 Sum_probs=97.0
Q ss_pred EEEEeC---CCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCC-ceEeEEEEEEEcCCCc
Q 001387 706 IRSIPL---GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTF-EYGCSILSCSFSDDSN 781 (1088)
Q Consensus 706 ~~~i~l---~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~-E~v~si~~~~~~~~~~ 781 (1088)
.+.+++ ...|+.++..++.+.++.... ...|..+|+. .+. ..+.++.. ..+.++. +..++
T Consensus 10 ~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~----------~~~v~~~~~~-~~~-~~~~~~~~~~~~~~i~---~~~~g- 73 (300)
T 2qc5_A 10 LEEFNLSIPDSGPYGITSSEDGKVWFTQHK----------ANKISSLDQS-GRI-KEFEVPTPDAKVMCLI---VSSLG- 73 (300)
T ss_dssp EEEEECSSTTCCEEEEEECTTSCEEEEETT----------TTEEEEECTT-SCE-EEEECSSTTCCEEEEE---ECTTS-
T ss_pred EEEEecCCCCCCcceeeECCCCCEEEEcCC----------CCeEEEECCC-Cce-EEEECCCCCCcceeEE---ECCCC-
Confidence 444555 357889999988776664321 1467788876 443 33444432 3344443 33322
Q ss_pred eEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cCeEEEEE--CCEEEEEEeeeccCccccc
Q 001387 782 VYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAI--NQKIQLYKWMLRDDGTREL 858 (1088)
Q Consensus 782 ~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g~Lv~~~--g~~l~v~~~~~~~~~~~~L 858 (1088)
. +.|++. ..|+|+.|+.. ++++..........+.+++.- +|+|+++. ++.|+.++. ++..+.
T Consensus 74 ~-l~v~~~---------~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~----~g~~~~ 138 (300)
T 2qc5_A 74 D-IWFTEN---------GANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTA----DGTIYE 138 (300)
T ss_dssp C-EEEEET---------TTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT----TSCEEE
T ss_pred C-EEEEec---------CCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECC----CCCEEE
Confidence 3 344431 24677777654 444322111112456666644 57888876 456665542 122211
Q ss_pred ccccccccceEEEEEEEe-CCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCceEEEEccC-CcEEEE
Q 001387 859 QSECGHHGHILALYVQTR-GDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENN-FNLFTV 936 (1088)
Q Consensus 859 ~~~~~~~~~~~~~~l~~~-~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l~~D~~-gnl~~l 936 (1088)
.... .....+..+... ++.++++|...+- +++|+. ..++..+..........++.+-.++.+.+++.. +.+..+
T Consensus 139 ~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 214 (300)
T 2qc5_A 139 YDLP--NKGSYPAFITLGSDNALWFTENQNNS-IGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRI 214 (300)
T ss_dssp EECS--STTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred ccCC--CCCCCceeEEECCCCCEEEEecCCCe-EEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEE
Confidence 1111 011234444443 2348888875442 456776 445554432222233444433334556666654 345555
Q ss_pred e
Q 001387 937 R 937 (1088)
Q Consensus 937 ~ 937 (1088)
.
T Consensus 215 ~ 215 (300)
T 2qc5_A 215 T 215 (300)
T ss_dssp C
T ss_pred c
Confidence 4
No 154
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=89.62 E-value=27 Score=38.15 Aligned_cols=127 Identities=17% Similarity=0.238 Sum_probs=75.2
Q ss_pred cCcEEEEecCCcceeeeeeCCCCCcEEEEEECCCEEEEEECCCeEEEEEEcCcEEEEEeeccCCc-eeEEEEeCCCCCCC
Q 001387 466 SGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEY-EISCLDINPIGENP 544 (1088)
Q Consensus 466 ~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~-~is~l~~~~~~~~~ 544 (1088)
...+..++.++++. .|..+.+ ........+..+.+...++.+..+....|+..-... .+.. ..+...+
T Consensus 248 ~g~l~~~d~~tG~~--~w~~~~~-~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~------- 316 (376)
T 3q7m_A 248 NGNLTALDLRSGQI--MWKRELG-SVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQS-DLLHRLLTSPVL------- 316 (376)
T ss_dssp TSCEEEEETTTCCE--EEEECCC-CEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEEC-TTTTSCCCCCEE-------
T ss_pred CcEEEEEECCCCcE--EeeccCC-CCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeec-ccCCCcccCCEE-------
Confidence 34677787765443 3654443 244445567778777777788877766665432211 1211 1222222
Q ss_pred CCccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEE
Q 001387 545 SYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFL 609 (1088)
Q Consensus 545 ~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~ 609 (1088)
....+.+++. +|.+..++..+-+.++...+.......+..+. ...|++++.+|.|+.|+
T Consensus 317 -~~~~l~v~~~-~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~----~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 317 -YNGNLVVGDS-EGYLHWINVEDGRFVAQQKVDSSGFQTEPVAA----DGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp -ETTEEEEECT-TSEEEEEETTTCCEEEEEECCTTCBCSCCEEE----TTEEEEEBTTSCEEEEE
T ss_pred -ECCEEEEEeC-CCeEEEEECCCCcEEEEEecCCCcceeCCEEE----CCEEEEEeCCCEEEEEe
Confidence 1457778877 89999999888777776555321121122222 35799999999998874
No 155
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=89.16 E-value=4.4 Score=47.20 Aligned_cols=109 Identities=8% Similarity=0.089 Sum_probs=71.0
Q ss_pred ccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCce-------EEEEEECCCC---ceEeEEEEEEEcCCCceE
Q 001387 714 HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFE-------FISTYPLDTF---EYGCSILSCSFSDDSNVY 783 (1088)
Q Consensus 714 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~-------~i~~~~~~~~---E~v~si~~~~~~~~~~~~ 783 (1088)
+.+.++|+|+.+.+++++.+ +.|++.|..+.+ .+.+++.... ..+.++ .+..++
T Consensus 131 sv~svafSPDG~~LAsgs~D----------GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sV---awSPdg--- 194 (588)
T 2j04_A 131 TYHCFEWNPIESSIVVGNED----------GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHI---VWYEDV--- 194 (588)
T ss_dssp CEEEEEECSSSSCEEEEETT----------SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEE---EEETTE---
T ss_pred cEEEEEEcCCCCEEEEEcCC----------CEEEEEECCCCccccccceeeeeeecccccccccEEEE---EEcCCc---
Confidence 46789999999999888754 579999987764 3555543221 234444 344433
Q ss_pred EEEEeeeeCCCCCCCcceEEEEEEEeCCeEE-EEEEE--EecCceeEeccccCeEEEEECCEEEEEEe
Q 001387 784 YCVGTAYVLPEENEPTKGRILVFIVEDGKLQ-LIAEK--ETKGAVYSLNAFNGKLLAAINQKIQLYKW 848 (1088)
Q Consensus 784 i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~-~~~~~--~~~g~v~ai~~~~g~Lv~~~g~~l~v~~~ 848 (1088)
++.|.. .+.+++|++.++++. ..... ..+..|.+++-.++.|+++.+++|++|+.
T Consensus 195 Laass~----------D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~~~tIkLWd~ 252 (588)
T 2j04_A 195 LVAALS----------NNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTCPGYVHKIDL 252 (588)
T ss_dssp EEEEET----------TCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEECSSEEEEEET
T ss_pred EEEEeC----------CCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEeCCeEEEEEC
Confidence 555542 367899998866643 22222 34577888775556777787888999875
No 156
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=88.34 E-value=26 Score=36.34 Aligned_cols=218 Identities=11% Similarity=0.022 Sum_probs=109.3
Q ss_pred EEEEeCCeEEEEEEcCCCCeEEEEEe-CCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECC
Q 001387 685 LAIAKEGELTIGTIDDIQKLHIRSIP-LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD 763 (1088)
Q Consensus 685 l~~~~~~~l~i~~l~~~~~~~~~~i~-l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~ 763 (1088)
+.+++.+.=.+..++...++..-.++ -+..|..++++++.+.++.... ...|..+|+ +.+.. .+.+.
T Consensus 70 l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----------~~~i~~~d~-~g~~~-~~~~~ 137 (299)
T 2z2n_A 70 VWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMN----------GNRIGRITD-DGKIR-EYELP 137 (299)
T ss_dssp EEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETT----------TTEEEEECT-TCCEE-EEECS
T ss_pred EEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecC----------CceEEEECC-CCCEE-EecCC
Confidence 44444322233444443333222233 2457888999887776654321 135777787 44432 33332
Q ss_pred -CCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cCeEEEEE--
Q 001387 764 -TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAI-- 839 (1088)
Q Consensus 764 -~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g~Lv~~~-- 839 (1088)
....+.+++ +..++ . +.+++. ..|.|+.|+. +++++..........+.+++.- +|.|+++.
T Consensus 138 ~~~~~~~~i~---~~~~g-~-l~v~~~---------~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~ 202 (299)
T 2z2n_A 138 NKGSYPSFIT---LGSDN-A-LWFTEN---------QNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII 202 (299)
T ss_dssp STTCCEEEEE---ECTTS-C-EEEEET---------TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT
T ss_pred CCCCCCceEE---EcCCC-C-EEEEeC---------CCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC
Confidence 233444443 33322 3 333431 2357777766 5555433111112345666644 57888887
Q ss_pred CCEEEEEEeeeccCcccccccccccccceEEEEEEEe-CCEEEEEecc-ccEEEEEEeccCCeEEEEeccCCCceeEEEE
Q 001387 840 NQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTR-GDFIVVGDLM-KSISLLIYKHEEGAIEERARDYNANWMSAVE 917 (1088)
Q Consensus 840 g~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~-~~~I~vgD~~-~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~ 917 (1088)
++.|..++. ++. +.....-.....+..+... ++.+++++.. .++ .+|+. ..++..+.-......+.++.
T Consensus 203 ~~~i~~~~~----~g~--~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i--~~~d~-~g~~~~~~~~~~~~~~~~i~ 273 (299)
T 2z2n_A 203 GNKIGRITT----SGE--ITEFKIPTPNARPHAITAGAGIDLWFTEWGANKI--GRLTS-NNIIEEYPIQIKSAEPHGIC 273 (299)
T ss_dssp TTEEEEECT----TCC--EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEE--EEEET-TTEEEEEECSSSSCCEEEEE
T ss_pred CceEEEECC----CCc--EEEEECCCCCCCceeEEECCCCCEEEeccCCceE--EEECC-CCceEEEeCCCCCCccceEE
Confidence 467766552 222 2111000111234455443 3368899855 455 45676 35665553222234556666
Q ss_pred EeeCceEEEEccCCcEEEEeeC
Q 001387 918 ILDDDIYLGAENNFNLFTVRKN 939 (1088)
Q Consensus 918 ~l~~~~~l~~D~~gnl~~l~~~ 939 (1088)
+ .++.+.+++..+.+..+...
T Consensus 274 ~-~~g~l~v~~~~~~l~~~~~~ 294 (299)
T 2z2n_A 274 F-DGETIWFAMECDKIGKLTLI 294 (299)
T ss_dssp E-CSSCEEEEETTTEEEEEEEC
T ss_pred e-cCCCEEEEecCCcEEEEEcC
Confidence 6 77777777667778777653
No 157
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=88.17 E-value=33 Score=37.37 Aligned_cols=135 Identities=10% Similarity=0.050 Sum_probs=73.1
Q ss_pred cEEEEecCCcceeeeeeCCC--------CCcEEEE-EECCCEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeE-EEEe
Q 001387 468 SVRLVSSTSRELRNEWKSPP--------GYSVNVA-TANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIS-CLDI 537 (1088)
Q Consensus 468 ~i~l~~~~~~~~~~~~~~~~--------~~~I~~a-~~~~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is-~l~~ 537 (1088)
.+..++.++++.+-+...+. +..+... .+.+..+++...++.+..+...+|+..-. .++..++. ...+
T Consensus 64 ~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~--~~~~~~~~~~p~~ 141 (376)
T 3q7m_A 64 LVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQ--TKVAGEALSRPVV 141 (376)
T ss_dssp EEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEE--EECSSCCCSCCEE
T ss_pred eEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEE--EeCCCceEcCCEE
Confidence 56667766544332222211 2234332 35577888887778888877666654322 12222221 1111
Q ss_pred CCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCCCcC----ceeEEeeeecCceEEEEEeCCCcEEEEEEecC
Q 001387 538 NPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEII----PRSVLLCAFEGISYLLCALGDGHLLNFLLNMK 613 (1088)
Q Consensus 538 ~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~----p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~ 613 (1088)
....+++++. ++.+..++..+-+.++......... ..+..+. ...+++|+.+|.+..+. ..
T Consensus 142 --------~~~~v~v~~~-~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~----~~~v~~g~~~g~l~~~d--~~ 206 (376)
T 3q7m_A 142 --------SDGLVLIHTS-NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA----FGAAVVGGDNGRVSAVL--ME 206 (376)
T ss_dssp --------ETTEEEEECT-TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE----TTEEEECCTTTEEEEEE--TT
T ss_pred --------ECCEEEEEcC-CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE----CCEEEEEcCCCEEEEEE--CC
Confidence 1357778877 8899999987777776544432110 0111212 24688899999877655 44
Q ss_pred CCcccc
Q 001387 614 TGELTD 619 (1088)
Q Consensus 614 ~~~l~~ 619 (1088)
+|++..
T Consensus 207 tG~~~w 212 (376)
T 3q7m_A 207 QGQMIW 212 (376)
T ss_dssp TCCEEE
T ss_pred CCcEEE
Confidence 555433
No 158
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=87.70 E-value=28 Score=35.99 Aligned_cols=167 Identities=13% Similarity=0.081 Sum_probs=97.9
Q ss_pred EEEEEeCCCcc--CeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCce
Q 001387 705 HIRSIPLGEHP--RRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 782 (1088)
Q Consensus 705 ~~~~i~l~~tp--~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~ 782 (1088)
.++.+|-+..| +-+.|+. +.+.+++... ..|.|+.+|++|++++.+..+++.-....+... ++
T Consensus 33 vv~~~phd~~~ftqGL~~~~--~~LyestG~~-------g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~-----g~- 97 (262)
T 3nol_A 33 IVHSYPHDTKAFTEGFFYRN--GYFYESTGLN-------GRSSIRKVDIESGKTLQQIELGKRYFGEGISDW-----KD- 97 (262)
T ss_dssp EEEEEECCTTCEEEEEEEET--TEEEEEEEET-------TEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE-----TT-
T ss_pred EEEEecCCCCcccceEEEEC--CEEEEECCCC-------CCceEEEEECCCCcEEEEEecCCccceeEEEEe-----CC-
Confidence 45777887777 7788883 4555555432 358999999999999999999875444434332 23
Q ss_pred EEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccccCeEEEEEC-CEEEEEEeeeccCcccccccc
Q 001387 783 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAIN-QKIQLYKWMLRDDGTRELQSE 861 (1088)
Q Consensus 783 ~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~g~Lv~~~g-~~l~v~~~~~~~~~~~~L~~~ 861 (1088)
.+.+.|- ..+++++|+.. .++++.+....+--.+++.-+++|+++.| ++|.+++ ..+ . +.+...
T Consensus 98 ~ly~ltw---------~~~~v~v~D~~--t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iD--p~T-~-~v~~~I 162 (262)
T 3nol_A 98 KIVGLTW---------KNGLGFVWNIR--NLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLD--PES-L-TPVRTI 162 (262)
T ss_dssp EEEEEES---------SSSEEEEEETT--TCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEEC--TTT-C-SEEEEE
T ss_pred EEEEEEe---------eCCEEEEEECc--cCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEc--CCC-C-eEEEEE
Confidence 3344442 34688888754 45566666665544577766678888886 3455433 221 1 112111
Q ss_pred cc-cccce--EEEEEEEeCCEEEEEeccccEEEEEEeccCCeEE
Q 001387 862 CG-HHGHI--LALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 902 (1088)
Q Consensus 862 ~~-~~~~~--~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~ 902 (1088)
.- ..... .+-.+.+.+.+|++..-... .+.+.++...+..
T Consensus 163 ~V~~~g~~~~~lNELe~~~G~lyan~w~~~-~I~vIDp~tG~V~ 205 (262)
T 3nol_A 163 TVTAHGEELPELNELEWVDGEIFANVWQTN-KIVRIDPETGKVT 205 (262)
T ss_dssp ECEETTEECCCEEEEEEETTEEEEEETTSS-EEEEECTTTCBEE
T ss_pred EeccCCccccccceeEEECCEEEEEEccCC-eEEEEECCCCcEE
Confidence 11 01111 12235556778888876554 3556677665543
No 159
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=86.88 E-value=39 Score=36.79 Aligned_cols=65 Identities=15% Similarity=0.115 Sum_probs=46.0
Q ss_pred EEEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCc--eEEEEEECCCCceEeEE
Q 001387 694 TIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTF--EFISTYPLDTFEYGCSI 771 (1088)
Q Consensus 694 ~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~--~~i~~~~~~~~E~v~si 771 (1088)
.+.-++....-.+++++++. |..++++|+.+.++++.. ..|.++|..++ +.+.++. .-++.+..+
T Consensus 287 ~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-----------~~v~v~D~~t~~l~~~~~i~-~~G~~P~~~ 353 (361)
T 2oiz_A 287 EIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-----------GNVNVYDISQPEPKLLRTIE-GAAEASLQV 353 (361)
T ss_dssp EEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-----------SCEEEEECSSSSCEEEEEET-TSCSSEEEE
T ss_pred eEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-----------CeEEEEECCCCcceeeEEec-cCCCCcEEE
Confidence 44455555556788999999 999999999996655431 46899999999 8887652 234444433
No 160
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=86.84 E-value=32 Score=39.87 Aligned_cols=223 Identities=12% Similarity=0.052 Sum_probs=103.6
Q ss_pred CCEEEEEECCCCCceE--EecCCC-CcCceeEEeeee----cCceEEEEEeCCCcEEEEEEecCCCc------cccc-ee
Q 001387 557 DISVRIFSLPDLNLIT--KEHLGG-EIIPRSVLLCAF----EGISYLLCALGDGHLLNFLLNMKTGE------LTDR-KK 622 (1088)
Q Consensus 557 ~~~i~i~~l~~l~~~~--~~~l~~-~~~p~si~~~~~----~~~~~L~vgl~~G~l~~y~~~~~~~~------l~~~-~~ 622 (1088)
|++|+||++..-+... ...+.. ...+.++...+. ++..+|..|..||.+..|.+...... +... ..
T Consensus 182 D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~ 261 (524)
T 2j04_B 182 SSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLT 261 (524)
T ss_dssp CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEE
T ss_pred CceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEE
Confidence 6789999985433211 111111 112345544432 11346778999999999987643210 0000 01
Q ss_pred eecCccceeEEEEEeCCceEEEEecCCceEEEec-C-Cc--EEEeecccccceeee-ccCCCCCC-CeEEEEe-CCeEEE
Q 001387 623 VSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSS-N-KK--LLYSNVNLKEVSHMC-PFNSAAFP-DSLAIAK-EGELTI 695 (1088)
Q Consensus 623 ~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~i~~~-~-~~--~~~~~l~~~~i~~~~-~f~~~~~~-~~l~~~~-~~~l~i 695 (1088)
......++.=..+. .+ ..+...+..-.+-.++ + +. ....+.+...+.+++ .|+. .+ ..|+-++ ++.+++
T Consensus 262 l~~h~~~v~sv~~s-~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~--~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 262 LSLADSLITTFDFL-SP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD--FEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp ECCTTTCEEEEEES-SS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT--TSCCEEEEEETTSEEEE
T ss_pred EEcCCCCEEEEEec-CC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC--CCCeEEEEeccCCeEEE
Confidence 11112233222221 11 2222222222322222 1 11 111223334565553 3322 12 2334333 678888
Q ss_pred EEEcCCCCeEEEEEeCC-CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEE
Q 001387 696 GTIDDIQKLHIRSIPLG-EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSC 774 (1088)
Q Consensus 696 ~~l~~~~~~~~~~i~l~-~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~ 774 (1088)
-.+........-.-... .....++|+|..+.++.+..+ ..+++.|..+...+..+. .....+.+++
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d----------~tv~lwd~~~~~~~~~l~-gH~~~V~sva-- 404 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGA----------SSLRAVPSRAAFAVHPLV-SRETTITAIG-- 404 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSS----------SEEEEEETTCTTCCEEEE-ECSSCEEEEE--
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCC----------CcEEEEECcccccceeee-cCCCceEEEE--
Confidence 77754321111111112 235789999988876554322 368999987765543332 1223455543
Q ss_pred EEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEE
Q 001387 775 SFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIV 808 (1088)
Q Consensus 775 ~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i 808 (1088)
+.. ..++++.|. .-|.+.+|+.
T Consensus 405 -~Sp-~g~~l~Sgs----------~Dgtv~lwd~ 426 (524)
T 2j04_B 405 -VSR-LHPMVLAGS----------ADGSLIITNA 426 (524)
T ss_dssp -CCS-SCCBCEEEE----------TTTEEECCBS
T ss_pred -eCC-CCCeEEEEE----------CCCEEEEEec
Confidence 443 245677665 2367777764
No 161
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=86.43 E-value=45 Score=37.03 Aligned_cols=131 Identities=9% Similarity=-0.026 Sum_probs=64.5
Q ss_pred ceEEEEEEEeCCeEEEEEEEEecCceeEec--cccCeEEEEE-C--CEEEEEEeeeccCcccccccccccccceEEEEEE
Q 001387 800 KGRILVFIVEDGKLQLIAEKETKGAVYSLN--AFNGKLLAAI-N--QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQ 874 (1088)
Q Consensus 800 ~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~--~~~g~Lv~~~-g--~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~ 874 (1088)
.++|.+++.+....+.+....... +.+|+ +.+|+|+++. | .+|+...+ +|..+..-...--..+..+.++
T Consensus 180 ~~~I~~~~~~g~~~~~l~~~~~~~-P~~iavdp~~g~ly~td~~~~~~I~~~~~----dG~~~~~~~~~~l~~P~glavd 254 (400)
T 3p5b_L 180 LGTVSVADTKGVKRKTLFRENGSK-PRAIVVDPVHGFMYWTDWGTPAKIKKGGL----NGVDIYSLVTENIQWPNGITLD 254 (400)
T ss_dssp TTEEEEECTTTCSEEEEEECSSCC-EEEEEEETTTTEEEEEECSSSCCEEEEET----TSCSCEEEECSSCSCEEEEEEE
T ss_pred CCeEEEEeCCCCceEEEEeCCCCC-cceEEEecccCeEEEEeCCCCCEEEEEeC----CCCccEEEEECCCCceEEEEEE
Confidence 356666655544444444333322 44443 4578888876 3 45665554 2322111111101122344444
Q ss_pred EeCCEEEEEeccccEEEEEEeccCCeEEEEecc-CCCceeEEEEEeeCceEEEEccC-CcEEEEe
Q 001387 875 TRGDFIVVGDLMKSISLLIYKHEEGAIEERARD-YNANWMSAVEILDDDIYLGAENN-FNLFTVR 937 (1088)
Q Consensus 875 ~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D-~~~~~v~~~~~l~~~~~l~~D~~-gnl~~l~ 937 (1088)
..+++|+++|....- +.+++.+......+... ..-.+..++.+ +++.++.+|.. +.|..+.
T Consensus 255 ~~~~~lY~aD~~~~~-I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~ 317 (400)
T 3p5b_L 255 LLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSAN 317 (400)
T ss_dssp TTTTEEEEEETTTTE-EEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEE
T ss_pred eCCCEEEEEECCCCE-EEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEE
Confidence 457899999987653 44566554433333332 11223334443 66777777754 4444443
No 162
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=85.61 E-value=33 Score=35.83 Aligned_cols=203 Identities=13% Similarity=0.082 Sum_probs=92.4
Q ss_pred CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEE----Ee
Q 001387 713 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCV----GT 788 (1088)
Q Consensus 713 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~V----GT 788 (1088)
..|..++++++.++++.. .. ...|..+|+.+.+..................+.+..++ .+++. ||
T Consensus 69 ~~~~~l~~~~dg~l~v~~-~~---------~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~ 137 (296)
T 3e5z_A 69 HHQNGHCLNKQGHLIACS-HG---------LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGI 137 (296)
T ss_dssp SSEEEEEECTTCCEEEEE-TT---------TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTS-CEEEEECSHHH
T ss_pred CCcceeeECCCCcEEEEe-cC---------CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCC-CEEEECCcccc
Confidence 467888999888765432 21 14688888866654322111111111111112233333 34443 44
Q ss_pred eeeC---CCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cCeEEEEEC--CEEEEEEeeeccCccc-ccccc
Q 001387 789 AYVL---PEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAIN--QKIQLYKWMLRDDGTR-ELQSE 861 (1088)
Q Consensus 789 ~~~~---~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g~Lv~~~g--~~l~v~~~~~~~~~~~-~L~~~ 861 (1088)
.... ..+.....|+|+.++.. ++++.+. .....+..++-- +|+++++.. ++|++|+++ .++.. .-...
T Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~--~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~--~~g~~~~~~~~ 212 (296)
T 3e5z_A 138 DKPEEGYGGEMELPGRWVFRLAPD-GTLSAPI--RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLN--ARGETEYQGVH 212 (296)
T ss_dssp HCGGGSSCCCCCSSSCEEEEECTT-SCEEEEE--CCCSSEEEEEECTTSCEEEEETTTTEEEEEEEC--SSSCEEEEEEE
T ss_pred ccccccccccccCCCcEEEEECCC-CCEEEee--cCCCCCccEEECCCCCEEEEeCCCCeEEEEEEC--CCCcCcCCCeE
Confidence 2100 01122345787777544 4554432 223345555533 455445443 578777763 22321 00111
Q ss_pred c-ccccceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEee-Cc-eEEEEccCCcEEEEee
Q 001387 862 C-GHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILD-DD-IYLGAENNFNLFTVRK 938 (1088)
Q Consensus 862 ~-~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~-~~-~~l~~D~~gnl~~l~~ 938 (1088)
. .....+..+.+...| .+++++ ..+| .+|+++...+..+... .. ++++.|-. ++ .+.++.. +.|+-++.
T Consensus 213 ~~~~~~~p~~i~~d~~G-~l~v~~-~~~v--~~~~~~g~~~~~~~~~-~~--~~~~~f~~~d~~~L~v~t~-~~l~~~~~ 284 (296)
T 3e5z_A 213 FTVEPGKTDGLRVDAGG-LIWASA-GDGV--HVLTPDGDELGRVLTP-QT--TSNLCFGGPEGRTLYMTVS-TEFWSIET 284 (296)
T ss_dssp ECCSSSCCCSEEEBTTS-CEEEEE-TTEE--EEECTTSCEEEEEECS-SC--CCEEEEESTTSCEEEEEET-TEEEEEEC
T ss_pred eeCCCCCCCeEEECCCC-CEEEEc-CCeE--EEECCCCCEEEEEECC-CC--ceeEEEECCCCCEEEEEcC-CeEEEEEc
Confidence 0 001111223333334 578888 5554 5678775555444322 22 55666643 32 3444433 45665554
Q ss_pred C
Q 001387 939 N 939 (1088)
Q Consensus 939 ~ 939 (1088)
.
T Consensus 285 ~ 285 (296)
T 3e5z_A 285 N 285 (296)
T ss_dssp S
T ss_pred c
Confidence 3
No 163
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=85.59 E-value=31 Score=35.93 Aligned_cols=169 Identities=14% Similarity=0.129 Sum_probs=84.4
Q ss_pred EEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEec-
Q 001387 744 HFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETK- 822 (1088)
Q Consensus 744 s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~- 822 (1088)
..|.++|+++++.+.++.....+.+.++. +..++ ++++ +. .++++.|+. +++ ++.+.+..
T Consensus 15 ~~v~~~d~~tG~~~w~~~~~~~~~~~~~~---~~pdG-~ilv--s~----------~~~V~~~d~-~G~--~~W~~~~~~ 75 (276)
T 3no2_A 15 NKIAIINKDTKEIVWEYPLEKGWECNSVA---ATKAG-EILF--SY----------SKGAKMITR-DGR--ELWNIAAPA 75 (276)
T ss_dssp SEEEEEETTTTEEEEEEECCTTCCCCEEE---ECTTS-CEEE--EC----------BSEEEEECT-TSC--EEEEEECCT
T ss_pred CEEEEEECCCCeEEEEeCCCccCCCcCeE---ECCCC-CEEE--eC----------CCCEEEECC-CCC--EEEEEcCCC
Confidence 67899999999999999886544445443 22233 4444 21 135666654 333 23333332
Q ss_pred -CceeEeccc-cCeEEEEECC-EEEEEEeeeccCccccccccc---c---cccceEEEEEEEeCCEEEEEeccccEEEEE
Q 001387 823 -GAVYSLNAF-NGKLLAAINQ-KIQLYKWMLRDDGTRELQSEC---G---HHGHILALYVQTRGDFIVVGDLMKSISLLI 893 (1088)
Q Consensus 823 -g~v~ai~~~-~g~Lv~~~g~-~l~v~~~~~~~~~~~~L~~~~---~---~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~ 893 (1088)
..++++... +|.++++... .-.++.++. +|+. +.... . ....+..+.....|+++ +.+..++. ++.
T Consensus 76 ~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~--~Gk~-l~~~~~~~~~~~~~~~~~~v~~~~~G~~l-v~~~~~~~-v~~ 150 (276)
T 3no2_A 76 GCEMQTARILPDGNALVAWCGHPSTILEVNM--KGEV-LSKTEFETGIERPHAQFRQINKNKKGNYL-VPLFATSE-VRE 150 (276)
T ss_dssp TCEEEEEEECTTSCEEEEEESTTEEEEEECT--TSCE-EEEEEECCSCSSGGGSCSCCEECTTSCEE-EEETTTTE-EEE
T ss_pred CccccccEECCCCCEEEEecCCCCEEEEEeC--CCCE-EEEEeccCCCCcccccccCceECCCCCEE-EEecCCCE-EEE
Confidence 345555544 5666655433 445556542 3421 11110 0 00011112233345654 55655553 456
Q ss_pred EeccCCeEEEEeccCCCceeEEEEEeeCceEEEEccCCcEEEEeeCC
Q 001387 894 YKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNS 940 (1088)
Q Consensus 894 ~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~~ 940 (1088)
|+.+.+.+-....... ..++.++.++.+++++..++ .++.+++
T Consensus 151 ~d~~G~~~w~~~~~~~---~~~~~~~~~g~~~v~~~~~~-~v~~~d~ 193 (276)
T 3no2_A 151 IAPNGQLLNSVKLSGT---PFSSAFLDNGDCLVACGDAH-CFVQLNL 193 (276)
T ss_dssp ECTTSCEEEEEECSSC---CCEEEECTTSCEEEECBTTS-EEEEECT
T ss_pred ECCCCCEEEEEECCCC---ccceeEcCCCCEEEEeCCCC-eEEEEeC
Confidence 8887444444443322 33455566666666666554 2444444
No 164
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=85.36 E-value=43 Score=40.96 Aligned_cols=132 Identities=9% Similarity=-0.024 Sum_probs=67.6
Q ss_pred cceEEEEEEEeCCeEEEEEEEEecCceeEec--cccCeEEEEE-C--CEEEEEEeeeccCcccccccccccccceEEEEE
Q 001387 799 TKGRILVFIVEDGKLQLIAEKETKGAVYSLN--AFNGKLLAAI-N--QKIQLYKWMLRDDGTRELQSECGHHGHILALYV 873 (1088)
Q Consensus 799 ~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~--~~~g~Lv~~~-g--~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l 873 (1088)
..++|.+++.+....+.+...... .+.+|+ ..+|+|+++- | .+|....+ +|..+..-...--..+..+.+
T Consensus 491 ~~~~I~v~~ldG~~~~~l~~~~l~-~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~----dG~~~~~lv~~~l~~P~GLav 565 (791)
T 3m0c_C 491 VLGTVSVADTKGVKRKTLFRENGS-KPRAIVVDPVHGFMYWTDWGTPAKIKKGGL----NGVDIYSLVTENIQWPNGITL 565 (791)
T ss_dssp TTTEEEEEETTSSSEEEEEECTTC-CEEEEEEETTTTEEEEEECSSSCEEEEEET----TSCCEEEEECSSCSCEEEEEE
T ss_pred CCCeEEEEeCCCCeEEEEEeCCCC-CcceEEEecCCCCEEEecCCCCCeEEEEec----CCCceEEEEeCCCCCceEEEE
Confidence 346777777665444444433332 344544 4578888876 3 46666554 343221111110112334445
Q ss_pred EEeCCEEEEEeccccEEEEEEeccCCeEEEEecc-CCCceeEEEEEeeCceEEEEccC-CcEEEEe
Q 001387 874 QTRGDFIVVGDLMKSISLLIYKHEEGAIEERARD-YNANWMSAVEILDDDIYLGAENN-FNLFTVR 937 (1088)
Q Consensus 874 ~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D-~~~~~v~~~~~l~~~~~l~~D~~-gnl~~l~ 937 (1088)
...+++|+++|....- +.+++.+......+... ..-.+..++.+ .++.+..+|.. +.|+.+.
T Consensus 566 D~~~~~LYwaD~~~~~-I~~~d~dG~~~~~v~~~~~~l~~P~glav-~~~~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 566 DLLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSAN 629 (791)
T ss_dssp ETTTTEEEEEETTTTE-EEEEETTSCSCEEEEECTTTTSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred ecCCCeEEEEeCCCCc-EEEEecCCCceEEEecCCCccCCCCEEEE-eCCEEEEEECCCCEEEEEe
Confidence 5558899999987652 44566554433333332 22223334443 56677788864 4444443
No 165
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=84.48 E-value=8.5 Score=44.85 Aligned_cols=193 Identities=9% Similarity=0.097 Sum_probs=102.4
Q ss_pred CccCeEEEecC------CCEEEEEEeecCCCcCcceeEEEEEEeCCCceEE---------EEEECCCC-ceEeEEEEEEE
Q 001387 713 EHPRRICHQEQ------SRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFI---------STYPLDTF-EYGCSILSCSF 776 (1088)
Q Consensus 713 ~tp~~i~y~~~------~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i---------~~~~~~~~-E~v~si~~~~~ 776 (1088)
..+..++++|. .+.++.++.+ +.|++.|..+.+.. ....+..+ ..+.|+ .+
T Consensus 208 ~~V~~v~wsp~~~~~~~~~~LAs~s~D----------gtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv---~~ 274 (524)
T 2j04_B 208 GEVWDLKWHEGCHAPHLVGCLSFVSQE----------GTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTF---DF 274 (524)
T ss_dssp CSEEEEEECSSCCCSSSSCEEEEEETT----------SCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEE---EE
T ss_pred CcEEEEEECCCCCCCCCCceEEEEecC----------CeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEE---Ee
Confidence 45677888885 3455444432 46888876543211 01123222 234443 33
Q ss_pred cCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEec-cc--cC-eEEEEE--CCEEEEEEeee
Q 001387 777 SDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLN-AF--NG-KLLAAI--NQKIQLYKWML 850 (1088)
Q Consensus 777 ~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~-~~--~g-~Lv~~~--g~~l~v~~~~~ 850 (1088)
.. ...|+.|+ ..|.|.+|++..++.....-..+.++|++|+ .+ +| +++++. ..+++++++.
T Consensus 275 s~--~~~lasgs----------~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~- 341 (524)
T 2j04_B 275 LS--PTTVVCGF----------KNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPK- 341 (524)
T ss_dssp SS--SSEEEEEE----------TTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGG-
T ss_pred cC--CCeEEEEe----------CCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECC-
Confidence 33 24688776 3489999998743221111234678999994 34 34 665544 3678887652
Q ss_pred ccCcccccccccc-cc-cceEEEEEEEeCCEEEEEeccccEEEEEEeccCC-eEEEEeccCCCceeEEEEEeeCc-eEEE
Q 001387 851 RDDGTRELQSECG-HH-GHILALYVQTRGDFIVVGDLMKSISLLIYKHEEG-AIEERARDYNANWMSAVEILDDD-IYLG 926 (1088)
Q Consensus 851 ~~~~~~~L~~~~~-~~-~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~-~l~~~~~D~~~~~v~~~~~l~~~-~~l~ 926 (1088)
+ + +.+..... .. ..+..+.....+..++.|+..+.+.++ +.... .+..+.. +...|+++.|-.++ .++.
T Consensus 342 -~-~-~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lw--d~~~~~~~~~l~g--H~~~V~sva~Sp~g~~l~S 414 (524)
T 2j04_B 342 -D-I-ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAV--PSRAAFAVHPLVS--RETTITAIGVSRLHPMVLA 414 (524)
T ss_dssp -G-H-HHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEE--ETTCTTCCEEEEE--CSSCEEEEECCSSCCBCEE
T ss_pred -C-C-CcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEE--ECcccccceeeec--CCCceEEEEeCCCCCeEEE
Confidence 1 1 11111100 01 012223333345677888877777664 43322 2222222 44567777775444 4567
Q ss_pred EccCCcEEEEee
Q 001387 927 AENNFNLFTVRK 938 (1088)
Q Consensus 927 ~D~~gnl~~l~~ 938 (1088)
+..+|.+.++..
T Consensus 415 gs~Dgtv~lwd~ 426 (524)
T 2j04_B 415 GSADGSLIITNA 426 (524)
T ss_dssp EETTTEEECCBS
T ss_pred EECCCEEEEEec
Confidence 778898888764
No 166
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=83.64 E-value=42 Score=34.74 Aligned_cols=163 Identities=14% Similarity=0.073 Sum_probs=92.3
Q ss_pred EEEEEeCCCcc--CeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCce
Q 001387 705 HIRSIPLGEHP--RRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 782 (1088)
Q Consensus 705 ~~~~i~l~~tp--~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~ 782 (1088)
.++.+|.+..+ +-+.|+. +.+.+++... ..|+.+|++|++++.+. +++.-....+.. . ++.
T Consensus 45 Vv~~~phd~~~ftqGL~~~~--~~Ly~stG~~---------g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~---~--g~~ 107 (268)
T 3nok_A 45 IIREYPHATNAFTQGLVFHQ--GHFFESTGHQ---------GTLRQLSLESAQPVWME-RLGNIFAEGLAS---D--GER 107 (268)
T ss_dssp EEEEEECCTTCCEEEEEEET--TEEEEEETTT---------TEEEECCSSCSSCSEEE-ECTTCCEEEEEE---C--SSC
T ss_pred EEEEEcCCCccccceEEEEC--CEEEEEcCCC---------CEEEEEECCCCcEEeEE-CCCCcceeEEEE---e--CCE
Confidence 45677777666 6677774 4555555432 23999999999999888 776533333332 1 233
Q ss_pred EEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccccCeEEEEEC-CEEEEEEeeeccCcccccccc
Q 001387 783 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAIN-QKIQLYKWMLRDDGTRELQSE 861 (1088)
Q Consensus 783 ~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~g~Lv~~~g-~~l~v~~~~~~~~~~~~L~~~ 861 (1088)
. .+.|- ..+++++|+.. .++++.+....+.-.+++.-+++|+++.| ++|.+++ ..+ . +.+.+.
T Consensus 108 L-y~ltw---------~~~~v~V~D~~--Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iD--p~T-~-~v~~~I 171 (268)
T 3nok_A 108 L-YQLTW---------TEGLLFTWSGM--PPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHE--PDG-F-ALVGAV 171 (268)
T ss_dssp E-EEEES---------SSCEEEEEETT--TTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEEC--TTT-C-CEEEEE
T ss_pred E-EEEEc---------cCCEEEEEECC--cCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEc--CCC-C-eEEEEE
Confidence 3 33342 34688888754 45666666666655777766778888886 4555433 221 1 112111
Q ss_pred cc-cccc--eEEEEEEEeCCEEEEEeccccEEEEEEeccCCeE
Q 001387 862 CG-HHGH--ILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAI 901 (1088)
Q Consensus 862 ~~-~~~~--~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l 901 (1088)
.- .... .....|.+.+.+|++..-... .+.+.+++..+.
T Consensus 172 ~V~~~g~~v~~lNeLe~~dG~lyanvw~s~-~I~vIDp~TG~V 213 (268)
T 3nok_A 172 QVKLRGQPVELINELECANGVIYANIWHSS-DVLEIDPATGTV 213 (268)
T ss_dssp ECEETTEECCCEEEEEEETTEEEEEETTCS-EEEEECTTTCBE
T ss_pred EeCCCCcccccccccEEeCCEEEEEECCCC-eEEEEeCCCCcE
Confidence 10 0111 123345566778888775444 345566655543
No 167
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=82.58 E-value=46 Score=33.98 Aligned_cols=165 Identities=12% Similarity=0.038 Sum_probs=95.3
Q ss_pred EEEEeCCCc--cCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceE
Q 001387 706 IRSIPLGEH--PRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVY 783 (1088)
Q Consensus 706 ~~~i~l~~t--p~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~ 783 (1088)
++.+|-... ..-+.|++ +.+.+.+... ..|+|+.+|+.|++++.++.+++.-....+..+ ++.
T Consensus 12 ~~~~phd~~~ftqGL~~~~--~~LyestG~~-------g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-----~~~- 76 (243)
T 3mbr_X 12 VKRYPHDTTAFTEGLFYLR--GHLYESTGET-------GRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-----RDR- 76 (243)
T ss_dssp EEEEECCTTCCEEEEEEET--TEEEEEECCT-------TSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-----TTE-
T ss_pred EEEcCCCCccccccEEEEC--CEEEEECCCC-------CCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-----CCE-
Confidence 444555432 23466665 3444444332 248999999999999999999876544444432 233
Q ss_pred EEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccccCeEEEEEC-CEEEEEEeeeccCccccccccc
Q 001387 784 YCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAIN-QKIQLYKWMLRDDGTRELQSEC 862 (1088)
Q Consensus 784 i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~g~Lv~~~g-~~l~v~~~~~~~~~~~~L~~~~ 862 (1088)
+.+.|- ..|++++|+.. .++++.+....+.-.+++.-+++|+++-| ++|++ ++..+ -+.+.+..
T Consensus 77 ly~ltw---------~~~~v~v~D~~--tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~--iDp~t--~~~~~~I~ 141 (243)
T 3mbr_X 77 LIQLTW---------RNHEGFVYDLA--TLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRK--LDPDT--LQQVGSIK 141 (243)
T ss_dssp EEEEES---------SSSEEEEEETT--TTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEE--ECTTT--CCEEEEEE
T ss_pred EEEEEe---------eCCEEEEEECC--cCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEE--EeCCC--CeEEEEEE
Confidence 444452 35788888753 46667777776766788877788999887 44554 43221 11121111
Q ss_pred cc-ccc--eEEEEEEEeCCEEEEEeccccEEEEEEeccCCeE
Q 001387 863 GH-HGH--ILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAI 901 (1088)
Q Consensus 863 ~~-~~~--~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l 901 (1088)
-. ... .....|.+.+.+|++..-... .+.+.++...+.
T Consensus 142 V~~~g~~~~~lNeLe~~~G~lyanvw~s~-~I~vIDp~tG~V 182 (243)
T 3mbr_X 142 VTAGGRPLDNLNELEWVNGELLANVWLTS-RIARIDPASGKV 182 (243)
T ss_dssp CEETTEECCCEEEEEEETTEEEEEETTTT-EEEEECTTTCBE
T ss_pred EccCCcccccceeeEEeCCEEEEEECCCC-eEEEEECCCCCE
Confidence 10 111 123445666888888775444 345567665554
No 168
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=81.91 E-value=50 Score=37.08 Aligned_cols=81 Identities=20% Similarity=0.255 Sum_probs=52.0
Q ss_pred eEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCC---CCceEEecCCCC-------------cCceeEEeeeecCceE
Q 001387 532 ISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD---LNLITKEHLGGE-------------IIPRSVLLCAFEGISY 595 (1088)
Q Consensus 532 is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~---l~~~~~~~l~~~-------------~~p~si~~~~~~~~~~ 595 (1088)
++.|.+++ ...++.|+.|..++|.+|++.+ ++++........ .-|+.+.+.. +..+
T Consensus 323 pa~I~lS~------DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp--DGk~ 394 (462)
T 2ece_A 323 VTDIDISL------DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR--DGRR 394 (462)
T ss_dssp CCCEEECT------TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT--TSSE
T ss_pred eeEEEECC------CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC--CCCE
Confidence 44556643 3689999999999999999853 344433333211 1488887654 3467
Q ss_pred EEEEe--------------CCCcEEEEEEecCCCccccce
Q 001387 596 LLCAL--------------GDGHLLNFLLNMKTGELTDRK 621 (1088)
Q Consensus 596 L~vgl--------------~~G~l~~y~~~~~~~~l~~~~ 621 (1088)
|++.. .++.++..++++.+| |+..+
T Consensus 395 LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd~~~G-L~~~~ 433 (462)
T 2ece_A 395 VYVTNSLYSTWDNQFYPEGLKGWMVKLNANPSGG-LEIDK 433 (462)
T ss_dssp EEEECCCCHHHHHHHSTTCCCCEEEEEEECTTSC-EEEEE
T ss_pred EEEEcCCcccccccccCCCCceEEEEEEecCCCC-ceeCC
Confidence 78877 355666667788877 76443
No 169
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=80.52 E-value=59 Score=33.95 Aligned_cols=191 Identities=7% Similarity=0.007 Sum_probs=94.5
Q ss_pred EEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEE
Q 001387 707 RSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCV 786 (1088)
Q Consensus 707 ~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~V 786 (1088)
+.+..+..|..++.+++.+ ++++. . ..|..+|+.+.+...-.....+........+.+..+++ +.+
T Consensus 48 ~~~~~~~~~~~i~~~~dG~-l~v~~-~----------~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~--l~~ 113 (297)
T 3g4e_A 48 QRVTMDAPVSSVALRQSGG-YVATI-G----------TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGR--YFA 113 (297)
T ss_dssp EEEECSSCEEEEEEBTTSS-EEEEE-T----------TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSC--EEE
T ss_pred EEEeCCCceEEEEECCCCC-EEEEE-C----------CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCC--EEE
Confidence 4456677888999998888 44443 2 35788898776543222332221112223333444343 556
Q ss_pred EeeeeCC--CCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cC-eEEEEE--CCEEEEEEeeeccCccccccc
Q 001387 787 GTAYVLP--EENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NG-KLLAAI--NQKIQLYKWMLRDDGTRELQS 860 (1088)
Q Consensus 787 GT~~~~~--~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g-~Lv~~~--g~~l~v~~~~~~~~~~~~L~~ 860 (1088)
|+..... .......|+||.++. ++++..+... -..+..++-- +| .|+++- .++|++|+++. ++|. +..
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~~~~~--~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~-~~G~--~~~ 187 (297)
T 3g4e_A 114 GTMAEETAPAVLERHQGALYSLFP-DHHVKKYFDQ--VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDL-QTGQ--ISN 187 (297)
T ss_dssp EEEECCSBTTBCCTTCEEEEEECT-TSCEEEEEEE--ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECT-TTCC--EEE
T ss_pred ecCCcccccccccCCCcEEEEEEC-CCCEEEEeec--cccccceEEcCCCCEEEEecCCCCcEEEEeccC-CCCc--ccC
Confidence 6643210 011235677776654 3455443321 1223444433 34 566654 46788877631 2232 211
Q ss_pred ---ccccc-cceEEEEEEEe-CCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEe
Q 001387 861 ---ECGHH-GHILALYVQTR-GDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEIL 919 (1088)
Q Consensus 861 ---~~~~~-~~~~~~~l~~~-~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l 919 (1088)
...+. ....+-.+.+. +..+++++...+- +.+|+++..++...-.-+ ..+++++.|-
T Consensus 188 ~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~-v~~~d~~tG~~~~~i~~p-~~~~t~~~f~ 249 (297)
T 3g4e_A 188 RRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGR-VIRLDPVTGKRLQTVKLP-VDKTTSCCFG 249 (297)
T ss_dssp EEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTE-EEEECTTTCCEEEEEECS-SSBEEEEEEE
T ss_pred cEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCE-EEEEcCCCceEEEEEECC-CCCceEEEEe
Confidence 11111 11234444443 2368888876653 567888745543322222 2467777775
No 170
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=80.42 E-value=52 Score=34.38 Aligned_cols=165 Identities=12% Similarity=0.080 Sum_probs=85.3
Q ss_pred EEEEEEeCCC-----ceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEE
Q 001387 744 HFVRLLDDQT-----FEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAE 818 (1088)
Q Consensus 744 s~l~lid~~t-----~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~ 818 (1088)
..+..+|+.+ |+.+.........+ ++.. + +...+++|-... ......+++|+...++.+.+..
T Consensus 78 ~~~~~~d~~~~~~~~W~~~~~~p~~r~~~--~~~~--~---~~~lyv~GG~~~-----~~~~~~~~~~d~~~~~W~~~~~ 145 (301)
T 2vpj_A 78 SSVECLDYTADEDGVWYSVAPMNVRRGLA--GATT--L---GDMIYVSGGFDG-----SRRHTSMERYDPNIDQWSMLGD 145 (301)
T ss_dssp CCEEEEETTCCTTCCCEEECCCSSCCBSC--EEEE--E---TTEEEEECCBCS-----SCBCCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEECCCCCCCeeEECCCCCCCccce--eEEE--E---CCEEEEEcccCC-----CcccceEEEEcCCCCeEEECCC
Confidence 4566777643 77664433322222 2222 2 245667665321 1234578888888778877764
Q ss_pred EEecCceeEeccccCeEEEEEC-------CEEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEEE-Eec-----
Q 001387 819 KETKGAVYSLNAFNGKLLAAIN-------QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVV-GDL----- 885 (1088)
Q Consensus 819 ~~~~g~v~ai~~~~g~Lv~~~g-------~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~v-gD~----- 885 (1088)
....-.-.+.+.++++|++.-| +.+..|+. . ...++. .......-...++.+.++.|++ |-.
T Consensus 146 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~--~-~~~W~~--~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~ 220 (301)
T 2vpj_A 146 MQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDP--H-TGHWTN--VTPMATKRSGAGVALLNDHIYVVGGFDGTAH 220 (301)
T ss_dssp CSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEET--T-TTEEEE--ECCCSSCCBSCEEEEETTEEEEECCBCSSSB
T ss_pred CCCCcccceEEEECCEEEEECCCCCCcccceEEEEeC--C-CCcEEe--CCCCCcccccceEEEECCEEEEEeCCCCCcc
Confidence 4332223344556788776544 34555553 2 122222 2211111111223345665554 433
Q ss_pred cccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCceEEEE
Q 001387 886 MKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGA 927 (1088)
Q Consensus 886 ~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l~~ 927 (1088)
.+. +..|+.+.++-..++.-+.+|...++..+++..++.+
T Consensus 221 ~~~--v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G 260 (301)
T 2vpj_A 221 LSS--VEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIA 260 (301)
T ss_dssp CCC--EEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred cce--EEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEc
Confidence 233 4568888888888887777776555555554444443
No 171
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=79.87 E-value=37 Score=37.19 Aligned_cols=61 Identities=11% Similarity=0.054 Sum_probs=46.7
Q ss_pred EEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEe-ecCCCcCcceeEEEEEEeCCCceEEEEEECCCCc
Q 001387 697 TIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSL-KNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFE 766 (1088)
Q Consensus 697 ~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~-~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E 766 (1088)
-++....-.+++|+++..|..|++.++.+.+.+++. .. ..|.++|..+++++.+++....-
T Consensus 298 ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~---------~~VsVID~~t~kvv~~I~vg~~P 359 (368)
T 1mda_H 298 SVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGT---------EVLDIYDAASDQDQSSVELDKGP 359 (368)
T ss_dssp EEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTT---------TEEEEEESSSCEEEEECCCCSCC
T ss_pred EEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCC---------CeEEEEECCCCcEEEEEECCCCC
Confidence 555555557899999999999999999886555554 22 47999999999999887755443
No 172
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=79.69 E-value=59 Score=33.45 Aligned_cols=181 Identities=13% Similarity=0.018 Sum_probs=86.9
Q ss_pred CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECC-CCceEeEEEEEEEcCCCceEEEEEeeee
Q 001387 713 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD-TFEYGCSILSCSFSDDSNVYYCVGTAYV 791 (1088)
Q Consensus 713 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~-~~E~v~si~~~~~~~~~~~~i~VGT~~~ 791 (1088)
..|..+++.++.+.|+... . ...|..+|+. .+.. .+.+. ....+.++. +..+++ +.|++.
T Consensus 104 ~~~~~i~~~~~g~l~v~~~-~---------~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~---~d~~g~--l~v~~~-- 164 (300)
T 2qc5_A 104 SGPYGITEGLNGDIWFTQL-N---------GDRIGKLTAD-GTIY-EYDLPNKGSYPAFIT---LGSDNA--LWFTEN-- 164 (300)
T ss_dssp CCEEEEEECSTTCEEEEET-T---------TTEEEEECTT-SCEE-EEECSSTTCCEEEEE---ECTTSS--EEEEET--
T ss_pred CCCccceECCCCCEEEEcc-C---------CCeEEEECCC-CCEE-EccCCCCCCCceeEE---ECCCCC--EEEEec--
Confidence 5678888887777665432 1 1357777876 4433 34444 334454443 333333 444442
Q ss_pred CCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cCeEEEEEC--CEEEEEEeeeccCcccccccccccccce
Q 001387 792 LPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAIN--QKIQLYKWMLRDDGTRELQSECGHHGHI 868 (1088)
Q Consensus 792 ~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g~Lv~~~g--~~l~v~~~~~~~~~~~~L~~~~~~~~~~ 868 (1088)
..++|+.|+. ++++...........+.+++.- +|.|+++.. +.|..++. ++. +.....-....
T Consensus 165 -------~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~----~g~--~~~~~~~~~~~ 230 (300)
T 2qc5_A 165 -------QNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT----TGE--ISEYDIPTPNA 230 (300)
T ss_dssp -------TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT----TCC--EEEEECSSTTC
T ss_pred -------CCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC----CCc--EEEEECCCCCC
Confidence 2457777765 4454432111112345666544 578888763 56766553 222 11111001112
Q ss_pred EEEEEEEe-CCEEEEEecc-ccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCceEEEEcc
Q 001387 869 LALYVQTR-GDFIVVGDLM-KSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAEN 929 (1088)
Q Consensus 869 ~~~~l~~~-~~~I~vgD~~-~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l~~D~ 929 (1088)
.+..+... ++.++++|.. .++ .+|+.+ .++....-......+.++.+-.++.+.+++.
T Consensus 231 ~~~~i~~d~~g~l~v~~~~~~~i--~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 231 RPHAITAGKNSEIWFTEWGANQI--GRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFALK 290 (300)
T ss_dssp CEEEEEECSTTCEEEEETTTTEE--EEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEECS
T ss_pred CceEEEECCCCCEEEeccCCCeE--EEECCC-CcEEEEECCccCCccceeEeCCCCCEEEEcc
Confidence 34455543 3358999876 444 456763 4444332221112233333323445555555
No 173
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=79.66 E-value=74 Score=34.51 Aligned_cols=284 Identities=8% Similarity=0.023 Sum_probs=137.1
Q ss_pred eEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEe---------cCCEEEEEECCCCCceEEecCCC-
Q 001387 509 HLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMW---------TDISVRIFSLPDLNLITKEHLGG- 578 (1088)
Q Consensus 509 ~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w---------~~~~i~i~~l~~l~~~~~~~l~~- 578 (1088)
.+..++...+++. ...+..... .+++++ ...++.++.+ .++.|.+|++..++.+..-.+..
T Consensus 32 ~v~v~D~~t~~~~--~~i~~g~~p-~i~~sp------dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~ 102 (361)
T 2oiz_A 32 RVHVYDYTNGKFL--GMVPTAFNG-HVQVSN------DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPK 102 (361)
T ss_dssp EEEEEETTTCCEE--EEEECCEEE-EEEECT------TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTT
T ss_pred eEEEEECCCCeEE--EEecCCCCC-ceEECC------CCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcc
Confidence 4444443334432 223334445 777765 2567777764 25679999988777765433321
Q ss_pred ----CcCceeEEeeeecCceEEEEEeC--CCcEEEEEEecCCCcccccee-eecCcc-ceeEEEEEeCCceEEEEecCCc
Q 001387 579 ----EIIPRSVLLCAFEGISYLLCALG--DGHLLNFLLNMKTGELTDRKK-VSLGTQ-PITLRTFSSKNTTHVFAASDRP 650 (1088)
Q Consensus 579 ----~~~p~si~~~~~~~~~~L~vgl~--~G~l~~y~~~~~~~~l~~~~~-~~lG~~-pv~l~~~~~~~~~~v~~~~~~p 650 (1088)
...|..+.+.+ +..+|+++-. ++.+.++... ++++ .+. +..+.. ++.+.+ .+....+-++++..
T Consensus 103 ~~~~g~~p~~i~~sp--dg~~l~v~n~~~~~~v~v~d~~--~~~~--~~~~i~~~~~~~v~~~p--~~~~~~~~~~~dg~ 174 (361)
T 2oiz_A 103 RVQGLNYDGLFRQTT--DGKFIVLQNASPATSIGIVDVA--KGDY--VEDVTAAAGCWSVIPQP--NRPRSFMTICGDGG 174 (361)
T ss_dssp BCCBCCCGGGEEECT--TSSEEEEEEESSSEEEEEEETT--TTEE--EEEEGGGTTEEEEEECT--TSSSEEEEEETTSS
T ss_pred ccccCCCcceEEECC--CCCEEEEECCCCCCeEEEEECC--CCcE--EEEEecCCCcceeEEcC--CCCeeEEEECCCCc
Confidence 13577776653 3457787653 5677776543 2221 122 222221 111111 11111122223333
Q ss_pred eEEEe--cCCcEEEeecccccceee--eccCCC--CCCCeEEEEe-CCeEEEEEEcCCCCeEEEEEeCC--------Cc-
Q 001387 651 TVIYS--SNKKLLYSNVNLKEVSHM--CPFNSA--AFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPLG--------EH- 714 (1088)
Q Consensus 651 ~~i~~--~~~~~~~~~l~~~~i~~~--~~f~~~--~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l~--------~t- 714 (1088)
++... ..++..-.. ....+... .|.... ..++.+++.+ ++.+.+..+........+.+++. ..
T Consensus 175 ~~~v~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p 253 (361)
T 2oiz_A 175 LLTINLGEDGKVASQS-RSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVP 253 (361)
T ss_dssp EEEEEECTTSSEEEEE-ECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEE
T ss_pred EEEEEECCCCcEeeec-cccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccccccc
Confidence 22222 123322000 00000000 000000 0122445544 45555555543332333443332 12
Q ss_pred --cCeEEEecCCCEEEEEEeecCCCc-CcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeee
Q 001387 715 --PRRICHQEQSRTFAICSLKNQSCA-EESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYV 791 (1088)
Q Consensus 715 --p~~i~y~~~~~~~~v~~~~~~~~~-~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~ 791 (1088)
++.++++|+.+.+.|+...+...+ .......|.++|..+.+.+.++.... +.++ .+..+++ +++++.
T Consensus 254 ~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~---p~~i---a~spdg~-~l~v~n--- 323 (361)
T 2oiz_A 254 GGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD---ALSM---TIDQQRN-LMLTLD--- 323 (361)
T ss_dssp CCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT---CCEE---EEETTTT-EEEEEC---
T ss_pred CCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC---eeEE---EECCCCC-EEEEeC---
Confidence 334889998777666654221000 01123579999999999999988765 5554 3455555 555442
Q ss_pred CCCCCCCcceEEEEEEEeCCeEEEEEEE-EecCceeEe
Q 001387 792 LPEENEPTKGRILVFIVEDGKLQLIAEK-ETKGAVYSL 828 (1088)
Q Consensus 792 ~~~e~~~~~Gri~v~~i~~~kl~~~~~~-~~~g~v~ai 828 (1088)
. |.|.+|+...++|+++... .+-..+..+
T Consensus 324 -------~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~ 353 (361)
T 2oiz_A 324 -------G-GNVNVYDISQPEPKLLRTIEGAAEASLQV 353 (361)
T ss_dssp -------S-SCEEEEECSSSSCEEEEEETTSCSSEEEE
T ss_pred -------C-CeEEEEECCCCcceeeEEeccCCCCcEEE
Confidence 1 7899998887767777764 343344443
No 174
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=79.59 E-value=1.1e+02 Score=36.49 Aligned_cols=238 Identities=11% Similarity=0.088 Sum_probs=121.8
Q ss_pred eEEEEeCCeEEEEEEcC-----CCCeEEEEEeCC-Cc---------------cCeEEEecCCCEEEEEEeecC-------
Q 001387 684 SLAIAKEGELTIGTIDD-----IQKLHIRSIPLG-EH---------------PRRICHQEQSRTFAICSLKNQ------- 735 (1088)
Q Consensus 684 ~l~~~~~~~l~i~~l~~-----~~~~~~~~i~l~-~t---------------p~~i~y~~~~~~~~v~~~~~~------- 735 (1088)
.++++.++.+.+-.+.. ... +++... .. ++.+.++|+.+.++.+..+..
T Consensus 134 ~la~~~~~~i~v~~~~~~~~~~g~~---~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~ 210 (706)
T 2z3z_A 134 RVAYVRNHNLYIARGGKLGEGMSRA---IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPI 210 (706)
T ss_dssp EEEEEETTEEEEEECBCTTSCCCCC---EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEE
T ss_pred EEEEEECCeEEEEecCcccccCCCc---EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEe
Confidence 47778889999888876 321 222222 22 478999999998888764320
Q ss_pred ----------------CCcCcceeEEEEEEeCCCceEEEEEECCCC-ceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCC
Q 001387 736 ----------------SCAEESEMHFVRLLDDQTFEFISTYPLDTF-EYGCSILSCSFSDDSNVYYCVGTAYVLPEENEP 798 (1088)
Q Consensus 736 ----------------~~~~~~~~s~l~lid~~t~~~i~~~~~~~~-E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~ 798 (1088)
..++......|.++|..+.+.......... ..+.+ +.+..++ .+++++... ...
T Consensus 211 ~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~---~~~spdg-~~l~~~~~~-----~~~ 281 (706)
T 2z3z_A 211 VDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTN---LSWSPDE-NILYVAEVN-----RAQ 281 (706)
T ss_dssp EECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEE---EEECTTS-SEEEEEEEC-----TTS
T ss_pred eccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEee---EEEECCC-CEEEEEEeC-----CCC
Confidence 001122357789999888765432221122 23333 3344433 456655432 123
Q ss_pred cceEEEEEEEeCC-eEEEEEEEEecC---ceeEeccc---cCeEEEEEC--CEEEEEEeeeccCcccccccccccccceE
Q 001387 799 TKGRILVFIVEDG-KLQLIAEKETKG---AVYSLNAF---NGKLLAAIN--QKIQLYKWMLRDDGTRELQSECGHHGHIL 869 (1088)
Q Consensus 799 ~~Gri~v~~i~~~-kl~~~~~~~~~g---~v~ai~~~---~g~Lv~~~g--~~l~v~~~~~~~~~~~~L~~~~~~~~~~~ 869 (1088)
..+.|+++++..+ +++.+......+ ++.+++-. +|+++++.+ ..+.+|.++. ++ ..+...........
T Consensus 282 ~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~--~~-~~~~~l~~~~~~v~ 358 (706)
T 2z3z_A 282 NECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDT--TG-RLIRQVTKGEWEVT 358 (706)
T ss_dssp CEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEET--TS-CEEEECCCSSSCEE
T ss_pred CeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEEC--CC-CEEEecCCCCeEEE
Confidence 5678888888776 666665443332 22333221 566665543 3466666642 12 22222211111111
Q ss_pred -EEEEEEeCCEEEEEecccc---EEEEEEeccCCeEEEEeccCCCceeEEEEEeeCce-EEE--EccC--CcEEEEeeC
Q 001387 870 -ALYVQTRGDFIVVGDLMKS---ISLLIYKHEEGAIEERARDYNANWMSAVEILDDDI-YLG--AENN--FNLFTVRKN 939 (1088)
Q Consensus 870 -~~~l~~~~~~I~vgD~~~S---v~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~-~l~--~D~~--gnl~~l~~~ 939 (1088)
++..+..+++|+++-..++ ..++.++.+..++..+.. ...+.++.+-.++. ++. ++.. +.+++++..
T Consensus 359 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 359 NFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLTP---ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIG 434 (706)
T ss_dssp EEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESCC---SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESS
T ss_pred eeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceeccC---CCceEEEEECCCCCEEEEEecCCCCCcEEEEEECC
Confidence 1233334667776655543 567778766555555542 22344555544443 322 2222 446666543
No 175
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=79.57 E-value=74 Score=34.45 Aligned_cols=60 Identities=10% Similarity=0.032 Sum_probs=36.4
Q ss_pred CCEEEEEECCCeEEEEEEcCcEEEE-EeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEEC
Q 001387 498 ASQVLLATGGGHLVYLEIGDGILTE-VKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL 565 (1088)
Q Consensus 498 ~~~lvv~~~~~~l~~~~~~~~~l~~-~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l 565 (1088)
+..++-...++.+.+-++..++... +.. ..+.-+++++++| .+.+++-|.+ |++|+||++
T Consensus 295 g~~lASgS~DgTIkIWDl~tGk~l~tL~g-H~~~vvs~vafSP------DG~~LaSGS~-D~TIklWd~ 355 (356)
T 2w18_A 295 DHCAAAILTSGTIAIWDLLLGQCTALLPP-VSDQHWSFVKWSG------TDSHLLAGQK-DGNIFVYHY 355 (356)
T ss_dssp TTEEEEEETTSCEEEEETTTCSEEEEECC-C--CCCCEEEECS------SSSEEEEECT-TSCEEEEEE
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEecC-CCCCeEEEEEECC------CCCEEEEEEC-CCcEEEecC
Confidence 3344444457777777776665433 221 1112245678865 2578888888 999999974
No 176
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=79.25 E-value=78 Score=34.58 Aligned_cols=58 Identities=9% Similarity=0.061 Sum_probs=43.2
Q ss_pred EEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEE
Q 001387 695 IGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTY 760 (1088)
Q Consensus 695 i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~ 760 (1088)
+.-++....-.+++|+++..|..++++|+.+..++++... ...|.++|..+++++.++
T Consensus 300 V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~--------~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 300 VTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAG--------TEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCC--------CCeEEEEECCCCCEEeee
Confidence 4445555556779999999999999999999444444321 257999999999988773
No 177
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=77.96 E-value=90 Score=34.57 Aligned_cols=193 Identities=10% Similarity=-0.001 Sum_probs=91.4
Q ss_pred EEEEeCCeEEEEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEE-ECC
Q 001387 685 LAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTY-PLD 763 (1088)
Q Consensus 685 l~~~~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~-~~~ 763 (1088)
+++++...-.|..++............+..|+ ++++++.+.++++.... ...|..+++.+....... .+.
T Consensus 144 lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~--------~~~I~~~d~~~~~~~~~~g~~~ 214 (409)
T 3hrp_A 144 VLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEG--------THTVYVYMKASGWAPTRIGQLG 214 (409)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSST--------TCEEEEEEGGGTTCEEEEEECC
T ss_pred EEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCC--------CceEEEEEcCCCceeEEeeecc
Confidence 44444322233444443333334445566777 99999888666654321 126777777543222222 111
Q ss_pred --CCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecC----cee-Eec--cccCe
Q 001387 764 --TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKG----AVY-SLN--AFNGK 834 (1088)
Q Consensus 764 --~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g----~v~-ai~--~~~g~ 834 (1088)
....+.++. +..++. .|.+ +. ..|+|+.|+...+..+++......+ .+. .++ +-+++
T Consensus 215 ~~~~~~p~~ia---v~p~~g-~lyv-~d---------~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ 280 (409)
T 3hrp_A 215 STFSGKIGAVA---LDETEE-WLYF-VD---------SNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSN 280 (409)
T ss_dssp TTSCSCCCBCE---ECTTSS-EEEE-EC---------TTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTE
T ss_pred chhcCCcEEEE---EeCCCC-eEEE-EE---------CCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCE
Confidence 223344432 232223 3333 21 2468888877666655553322221 122 444 33578
Q ss_pred EEEEEC--CEEEEEEeeeccCcccc-ccccc---cc-c------cceEEEEEEEe--CCEEEEEec-cccEEEEEEeccC
Q 001387 835 LLAAIN--QKIQLYKWMLRDDGTRE-LQSEC---GH-H------GHILALYVQTR--GDFIVVGDL-MKSISLLIYKHEE 898 (1088)
Q Consensus 835 Lv~~~g--~~l~v~~~~~~~~~~~~-L~~~~---~~-~------~~~~~~~l~~~--~~~I~vgD~-~~Sv~~~~~~~~~ 898 (1088)
|+++-. ++|+.++. ++... +.... .+ + ....|..+.+. |+ ++++|. ...- +.+|+...
T Consensus 281 lyv~d~~~~~I~~~~~----~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~-I~~~~~~~ 354 (409)
T 3hrp_A 281 FYMSDQNLSSVYKITP----DGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYC-LRKLDILD 354 (409)
T ss_dssp EEEEETTTTEEEEECT----TCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCE-EEEEETTT
T ss_pred EEEEeCCCCEEEEEec----CCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCE-EEEEECCC
Confidence 887754 45555443 22211 11100 00 0 01124444443 44 999998 5443 56677445
Q ss_pred CeEEEEec
Q 001387 899 GAIEERAR 906 (1088)
Q Consensus 899 ~~l~~~~~ 906 (1088)
..+..++.
T Consensus 355 G~v~~~~g 362 (409)
T 3hrp_A 355 GYVSTVAG 362 (409)
T ss_dssp TEEEEEEE
T ss_pred CEEEEEeC
Confidence 66665554
No 178
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=77.59 E-value=74 Score=33.40 Aligned_cols=208 Identities=11% Similarity=-0.021 Sum_probs=98.0
Q ss_pred EEEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEE
Q 001387 694 TIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILS 773 (1088)
Q Consensus 694 ~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~ 773 (1088)
+|..++...+. .+.+..+..|.-+++.++.+.|+.-.... ...+..+|+.+.+......+........++.
T Consensus 54 ~I~~~d~~g~~-~~~~~~~~~p~gia~~~dG~l~vad~~~~--------~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~ 124 (306)
T 2p4o_A 54 EIVSITPDGNQ-QIHATVEGKVSGLAFTSNGDLVATGWNAD--------SIPVVSLVKSDGTVETLLTLPDAIFLNGITP 124 (306)
T ss_dssp EEEEECTTCCE-EEEEECSSEEEEEEECTTSCEEEEEECTT--------SCEEEEEECTTSCEEEEEECTTCSCEEEEEE
T ss_pred eEEEECCCCce-EEEEeCCCCceeEEEcCCCcEEEEeccCC--------cceEEEEcCCCCeEEEEEeCCCccccCcccc
Confidence 34555544332 34566778899999998888654332111 1235556666665433334443333333332
Q ss_pred EEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEE------ec---CceeEeccccCeEEEEE--CCE
Q 001387 774 CSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKE------TK---GAVYSLNAFNGKLLAAI--NQK 842 (1088)
Q Consensus 774 ~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~------~~---g~v~ai~~~~g~Lv~~~--g~~ 842 (1088)
+ . +.. +.|.. ...|+||.++...++.++..... .. ..+..|..-+++|+++. +++
T Consensus 125 ~---~-~~~-~~v~d---------~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~ 190 (306)
T 2p4o_A 125 L---S-DTQ-YLTAD---------SYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKML 190 (306)
T ss_dssp S---S-SSE-EEEEE---------TTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTE
T ss_pred c---C-CCc-EEEEE---------CCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCE
Confidence 1 1 222 23321 14578888876544433321110 00 12334522234677765 467
Q ss_pred EEEEEeeeccCccccccc-ccccccceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCC-ceeEEEEEe-
Q 001387 843 IQLYKWMLRDDGTRELQS-ECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNA-NWMSAVEIL- 919 (1088)
Q Consensus 843 l~v~~~~~~~~~~~~L~~-~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~-~~v~~~~~l- 919 (1088)
|+.|+++. ++...... .... ..+..+.+...| .++|+|...+- +.+|+++ .++..+++-..+ .+.+++.|-
T Consensus 191 I~~~~~~~--~g~~~~~~~~~~~-~~P~gi~vd~dG-~l~va~~~~~~-V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g 264 (306)
T 2p4o_A 191 LLRIPVDS--TDKPGEPEIFVEQ-TNIDDFAFDVEG-NLYGATHIYNS-VVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQ 264 (306)
T ss_dssp EEEEEBCT--TSCBCCCEEEEES-CCCSSEEEBTTC-CEEEECBTTCC-EEEECTT-CCEEEEECGGGTCTTEEEEEECC
T ss_pred EEEEEeCC--CCCCCccEEEecc-CCCCCeEECCCC-CEEEEeCCCCe-EEEECCC-CCEEEEeecccccCCceEEEEec
Confidence 77777631 12111000 0101 111223333345 57888875442 4557765 555544332223 556666664
Q ss_pred --eC-ceEEEEccC
Q 001387 920 --DD-DIYLGAENN 930 (1088)
Q Consensus 920 --~~-~~~l~~D~~ 930 (1088)
.+ +.+.+++..
T Consensus 265 ~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 265 TEGDCTAIYVVTNG 278 (306)
T ss_dssp STTTTTEEEEEECT
T ss_pred ccCCCCEEEEECCC
Confidence 23 455555554
No 179
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=77.45 E-value=18 Score=40.14 Aligned_cols=127 Identities=9% Similarity=0.127 Sum_probs=77.2
Q ss_pred EEEeCCeEEEEEEcCCCC--------e-EEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceE
Q 001387 686 AIAKEGELTIGTIDDIQK--------L-HIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEF 756 (1088)
Q Consensus 686 ~~~~~~~l~i~~l~~~~~--------~-~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~ 756 (1088)
+.+..+++.+..+...++ + +...+++.. +..+++ +.+.++|+ . .+.|+++|..+...
T Consensus 53 ~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~--~---------~~~l~v~dv~sl~~ 118 (388)
T 1xip_A 53 VAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS--T---------RNALYSLDLEELSE 118 (388)
T ss_dssp EEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE--E---------SSEEEEEESSSTTC
T ss_pred EEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE--c---------CCcEEEEEchhhhc
Confidence 334567777776654331 1 225677877 999999 55666666 2 25799999766553
Q ss_pred EEEE-ECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cCe
Q 001387 757 ISTY-PLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGK 834 (1088)
Q Consensus 757 i~~~-~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g~ 834 (1088)
.... .++. .+.++. ... .+ +++++ ..|.|++|++.+++++. ....|+|+|=- +|.
T Consensus 119 ~~~~~~~~~--~v~~i~---~~~--p~-~av~~----------~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSpkG~ 175 (388)
T 1xip_A 119 FRTVTSFEK--PVFQLK---NVN--NT-LVILN----------SVNDLSALDLRTKSTKQ-----LAQNVTSFDVTNSQL 175 (388)
T ss_dssp EEEEEECSS--CEEEEE---ECS--SE-EEEEE----------TTSEEEEEETTTCCEEE-----EEESEEEEEECSSEE
T ss_pred cCccceeec--ceeeEE---ecC--CC-EEEEE----------CCCCEEEEEccCCcccc-----ccCCceEEEEcCCce
Confidence 3322 2322 233333 221 22 66666 45899999998766643 34478888855 454
Q ss_pred EEEEECCEEEEEEee
Q 001387 835 LLAAINQKIQLYKWM 849 (1088)
Q Consensus 835 Lv~~~g~~l~v~~~~ 849 (1088)
.+.+.++++.+|..+
T Consensus 176 ~vg~~dg~i~~~~~~ 190 (388)
T 1xip_A 176 AVLLKDRSFQSFAWR 190 (388)
T ss_dssp EEEETTSCEEEEEEE
T ss_pred EEEEcCCcEEEEcCC
Confidence 445555889998764
No 180
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=77.38 E-value=70 Score=33.08 Aligned_cols=158 Identities=10% Similarity=0.065 Sum_probs=86.9
Q ss_pred ceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeE--eccc
Q 001387 754 FEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYS--LNAF 831 (1088)
Q Consensus 754 ~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~a--i~~~ 831 (1088)
.+++.+|.+++......+.. . ...+.++|+. .|+|.+++...+++.. +. +.....+ ++..
T Consensus 43 ~~Vv~~~phd~~~ftqGL~~---~---~~~Ly~stG~---------~g~v~~iD~~Tgkv~~--~~-l~~~~FgeGit~~ 104 (268)
T 3nok_A 43 AHIIREYPHATNAFTQGLVF---H---QGHFFESTGH---------QGTLRQLSLESAQPVW--ME-RLGNIFAEGLASD 104 (268)
T ss_dssp EEEEEEEECCTTCCEEEEEE---E---TTEEEEEETT---------TTEEEECCSSCSSCSE--EE-ECTTCCEEEEEEC
T ss_pred eEEEEEEcCCCccccceEEE---E---CCEEEEEcCC---------CCEEEEEECCCCcEEe--EE-CCCCcceeEEEEe
Confidence 36777788877765555532 2 2467777752 3567777766555432 22 4455444 6767
Q ss_pred cCeEEEEE--CCEEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeE---EEEec
Q 001387 832 NGKLLAAI--NQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAI---EERAR 906 (1088)
Q Consensus 832 ~g~Lv~~~--g~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l---~~~~~ 906 (1088)
+++|+++. ++.+.+|+.+ ..++++...+.. .+..+...+.+++++|--..+ ..++++..+. +.+..
T Consensus 105 g~~Ly~ltw~~~~v~V~D~~-----Tl~~~~ti~~~~--eGwGLt~Dg~~L~vSdGs~~l--~~iDp~T~~v~~~I~V~~ 175 (268)
T 3nok_A 105 GERLYQLTWTEGLLFTWSGM-----PPQRERTTRYSG--EGWGLCYWNGKLVRSDGGTML--TFHEPDGFALVGAVQVKL 175 (268)
T ss_dssp SSCEEEEESSSCEEEEEETT-----TTEEEEEEECSS--CCCCEEEETTEEEEECSSSEE--EEECTTTCCEEEEEECEE
T ss_pred CCEEEEEEccCCEEEEEECC-----cCcEEEEEeCCC--ceeEEecCCCEEEEECCCCEE--EEEcCCCCeEEEEEEeCC
Confidence 88998888 6778777742 123333222222 234455678999999964444 4457655432 23333
Q ss_pred cCCCc-eeEEEEEeeCceEEEEccCCcEEEEeeCC
Q 001387 907 DYNAN-WMSAVEILDDDIYLGAENNFNLFTVRKNS 940 (1088)
Q Consensus 907 D~~~~-~v~~~~~l~~~~~l~~D~~gnl~~l~~~~ 940 (1088)
+..+. .....++. ++.+.+..-..| .+...++
T Consensus 176 ~g~~v~~lNeLe~~-dG~lyanvw~s~-~I~vIDp 208 (268)
T 3nok_A 176 RGQPVELINELECA-NGVIYANIWHSS-DVLEIDP 208 (268)
T ss_dssp TTEECCCEEEEEEE-TTEEEEEETTCS-EEEEECT
T ss_pred CCcccccccccEEe-CCEEEEEECCCC-eEEEEeC
Confidence 33332 33344544 445555554444 4445554
No 181
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=77.11 E-value=62 Score=33.00 Aligned_cols=115 Identities=8% Similarity=0.071 Sum_probs=70.0
Q ss_pred EEEEEEEEecCc--eeEeccccCeEEEEECC----EEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEEEEecc
Q 001387 813 LQLIAEKETKGA--VYSLNAFNGKLLAAINQ----KIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLM 886 (1088)
Q Consensus 813 l~~~~~~~~~g~--v~ai~~~~g~Lv~~~g~----~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~ 886 (1088)
.+++.+..++.. ...+.-.+++|+.+.|. .|+.++++ .+ ++.+........++..+...++++++.+-.
T Consensus 9 ~~v~~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~---tg--kv~~~~~l~~~~fgeGi~~~~~~ly~ltw~ 83 (243)
T 3mbr_X 9 YRVVKRYPHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLE---TG--RILQRAEVPPPYFGAGIVAWRDRLIQLTWR 83 (243)
T ss_dssp EEEEEEEECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETT---TC--CEEEEEECCTTCCEEEEEEETTEEEEEESS
T ss_pred eEEEEEcCCCCccccccEEEECCEEEEECCCCCCceEEEEECC---CC--CEEEEEeCCCCcceeEEEEeCCEEEEEEee
Confidence 455555555433 33565457899999997 68777752 22 333333333444566677789999999988
Q ss_pred ccEEEEEEeccCCeE-EEEeccCCCceeEEEEEeeCceEEEEccCCcEEEEe
Q 001387 887 KSISLLIYKHEEGAI-EERARDYNANWMSAVEILDDDIYLGAENNFNLFTVR 937 (1088)
Q Consensus 887 ~Sv~~~~~~~~~~~l-~~~~~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~ 937 (1088)
.+.. +.|+.+..++ ..+.-...+ |..+ -+.+.++++|..+.|+++.
T Consensus 84 ~~~v-~v~D~~tl~~~~ti~~~~~G-wglt---~dg~~L~vSdgs~~l~~iD 130 (243)
T 3mbr_X 84 NHEG-FVYDLATLTPRARFRYPGEG-WALT---SDDSHLYMSDGTAVIRKLD 130 (243)
T ss_dssp SSEE-EEEETTTTEEEEEEECSSCC-CEEE---ECSSCEEEECSSSEEEEEC
T ss_pred CCEE-EEEECCcCcEEEEEeCCCCc-eEEe---eCCCEEEEECCCCeEEEEe
Confidence 8864 4688765443 233332222 4322 2456788999888877775
No 182
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=77.06 E-value=69 Score=32.73 Aligned_cols=191 Identities=9% Similarity=-0.058 Sum_probs=92.3
Q ss_pred CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeC
Q 001387 713 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVL 792 (1088)
Q Consensus 713 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~ 792 (1088)
..|+.+++++..+.+.++.... ..|..+++.+.... .+.-.....+..+. +...+.. +.|..
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~---------~~I~~~~~~g~~~~-~~~~~~~~~p~~ia---~d~~~~~-lyv~d---- 97 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISE---------PSIGRASLHGGEPT-TIIRQDLGSPEGIA---LDHLGRT-IFWTD---- 97 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTT---------TEEEEEESSSCCCE-EEECTTCCCEEEEE---EETTTTE-EEEEE----
T ss_pred CcEEEEEEecCCCEEEEEECCC---------CEEEEEecCCCCcE-EEEECCCCCccEEE---EEecCCe-EEEEE----
Confidence 4578899998776665554322 46777777543321 11111123444443 2222222 33322
Q ss_pred CCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEecc--ccCeEEEEEC----CEEEEEEeeeccCccc-ccccccccc
Q 001387 793 PEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNA--FNGKLLAAIN----QKIQLYKWMLRDDGTR-ELQSECGHH 865 (1088)
Q Consensus 793 ~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~--~~g~Lv~~~g----~~l~v~~~~~~~~~~~-~L~~~~~~~ 865 (1088)
...++|.+++.+....+.+..... ..+..++- -+|+|+++.. ++|+.+.++ +.. +.......
T Consensus 98 -----~~~~~I~~~~~~g~~~~~~~~~~~-~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d----g~~~~~~~~~~~- 166 (267)
T 1npe_A 98 -----SQLDRIEVAKMDGTQRRVLFDTGL-VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD----GTNRRILAQDNL- 166 (267)
T ss_dssp -----TTTTEEEEEETTSCSCEEEECSSC-SSEEEEEEETTTTEEEEEECCSSSCEEEEEETT----SCCCEEEECTTC-
T ss_pred -----CCCCEEEEEEcCCCCEEEEEECCC-CCccEEEEeeCCCEEEEEECCCCCcEEEEEecC----CCCcEEEEECCC-
Confidence 134678777765433333322222 23444443 3678887763 467666642 321 11110111
Q ss_pred cceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEecc-CCCceeEEEEEeeCceEEEEccC-CcEEEEe
Q 001387 866 GHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARD-YNANWMSAVEILDDDIYLGAENN-FNLFTVR 937 (1088)
Q Consensus 866 ~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D-~~~~~v~~~~~l~~~~~l~~D~~-gnl~~l~ 937 (1088)
..+..+.+...+++++++|....- +.+|+.+......+... ..|. ++. ++++.+.++|.. +.+..+.
T Consensus 167 ~~P~gia~d~~~~~lyv~d~~~~~-I~~~~~~g~~~~~~~~~~~~P~---gi~-~d~~~lyva~~~~~~v~~~d 235 (267)
T 1npe_A 167 GLPNGLTFDAFSSQLCWVDAGTHR-AECLNPAQPGRRKVLEGLQYPF---AVT-SYGKNLYYTDWKTNSVIAMD 235 (267)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTE-EEEEETTEEEEEEEEECCCSEE---EEE-EETTEEEEEETTTTEEEEEE
T ss_pred CCCcEEEEcCCCCEEEEEECCCCE-EEEEecCCCceEEEecCCCCce---EEE-EeCCEEEEEECCCCeEEEEe
Confidence 122233344447899999987653 44566654333333322 2232 332 356777778865 4554444
No 183
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=76.76 E-value=1.2e+02 Score=35.36 Aligned_cols=103 Identities=14% Similarity=0.214 Sum_probs=62.2
Q ss_pred CcEEEEecCCcceeeeeeCCCCCcEEEEEE--CCCEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCC
Q 001387 467 GSVRLVSSTSRELRNEWKSPPGYSVNVATA--NASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENP 544 (1088)
Q Consensus 467 ~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~--~~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~ 544 (1088)
..|.++|.++++.+..+. .|........ ++..+.++..++.+..+....++...+.+......+..+++++.+.
T Consensus 177 ~~V~viD~~t~~v~~~i~--~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~-- 252 (567)
T 1qks_A 177 GQIALIDGSTYEIKTVLD--TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEG-- 252 (567)
T ss_dssp TEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTT--
T ss_pred CeEEEEECCCCeEEEEEe--CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccC--
Confidence 467778877655565554 3333444444 3567777776777777776411222333344455566777752110
Q ss_pred CCccEEEEEEecCCEEEEEECCCCCceEE
Q 001387 545 SYSQIAAVGMWTDISVRIFSLPDLNLITK 573 (1088)
Q Consensus 545 ~~~~~~~vg~w~~~~i~i~~l~~l~~~~~ 573 (1088)
....+++|+.+.++++.+++..+++++..
T Consensus 253 pDGk~l~v~n~~~~~v~ViD~~t~~~~~~ 281 (567)
T 1qks_A 253 WEDKYAIAGAYWPPQYVIMDGETLEPKKI 281 (567)
T ss_dssp CTTTEEEEEEEETTEEEEEETTTCCEEEE
T ss_pred CCCCEEEEEEccCCeEEEEECCCCcEEEE
Confidence 02567777776589999999888777654
No 184
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=76.60 E-value=68 Score=32.47 Aligned_cols=192 Identities=9% Similarity=0.021 Sum_probs=89.5
Q ss_pred CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeC
Q 001387 713 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVL 792 (1088)
Q Consensus 713 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~ 792 (1088)
..|..++++++.+.|+++... ...|..+|+.+... ..+.......+.++. +..+++ +.|+..
T Consensus 24 ~~p~~i~~~~~g~l~v~~~~~---------~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~---~~~~g~--l~v~~~--- 85 (270)
T 1rwi_B 24 LSPSGVAVDSAGNVYVTSEGM---------YGRVVKLATGSTGT-TVLPFNGLYQPQGLA---VDGAGT--VYVTDF--- 85 (270)
T ss_dssp CCEEEEEECTTCCEEEEECSS---------SCEEEEECC------EECCCCSCCSCCCEE---ECTTCC--EEEEET---
T ss_pred CCccceEECCCCCEEEEccCC---------CCcEEEecCCCccc-ceEeeCCcCCcceeE---ECCCCC--EEEEcC---
Confidence 378899999888866534222 24677777755432 112222223444443 333333 444431
Q ss_pred CCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cCeEEEEE--CCEEEEEEeeeccCcccccccccccccceE
Q 001387 793 PEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAI--NQKIQLYKWMLRDDGTRELQSECGHHGHIL 869 (1088)
Q Consensus 793 ~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g~Lv~~~--g~~l~v~~~~~~~~~~~~L~~~~~~~~~~~ 869 (1088)
.|+|+.|+.....+..... .....+.+++.- +|+|+++. +..|+++. .+..+.... .......
T Consensus 86 -------~~~i~~~d~~~~~~~~~~~-~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~-----~~~~~~~~~-~~~~~~~ 151 (270)
T 1rwi_B 86 -------NNRVVTLAAGSNNQTVLPF-DGLNYPEGLAVDTQGAVYVADRGNNRVVKLA-----AGSKTQTVL-PFTGLND 151 (270)
T ss_dssp -------TTEEEEECTTCSCCEECCC-CSCSSEEEEEECTTCCEEEEEGGGTEEEEEC-----TTCCSCEEC-CCCSCCS
T ss_pred -------CCEEEEEeCCCceEeeeec-CCcCCCcceEECCCCCEEEEECCCCEEEEEE-----CCCceeEee-ccccCCC
Confidence 3577777654433332211 111345666544 67888875 35666553 121111111 0111112
Q ss_pred EEEEEEe-CCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCceEEEEcc-CCcEEEEee
Q 001387 870 ALYVQTR-GDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAEN-NFNLFTVRK 938 (1088)
Q Consensus 870 ~~~l~~~-~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l~~D~-~gnl~~l~~ 938 (1088)
+..+... ++.++++|...+- +..|+.+........... .....++.+-.++.+.++|. .+.+..+..
T Consensus 152 p~~i~~~~~g~l~v~~~~~~~-i~~~~~~~~~~~~~~~~~-~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~ 220 (270)
T 1rwi_B 152 PDGVAVDNSGNVYVTDTDNNR-VVKLEAESNNQVVLPFTD-ITAPWGIAVDEAGTVYVTEHNTNQVVKLLA 220 (270)
T ss_dssp CCCEEECTTCCEEEEEGGGTE-EEEECTTTCCEEECCCSS-CCSEEEEEECTTCCEEEEETTTSCEEEECT
T ss_pred ceeEEEeCCCCEEEEECCCCE-EEEEecCCCceEeecccC-CCCceEEEECCCCCEEEEECCCCcEEEEcC
Confidence 2333333 3358898876542 456776655543322111 13333443333346666665 556666653
No 185
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=75.57 E-value=87 Score=33.17 Aligned_cols=221 Identities=11% Similarity=-0.011 Sum_probs=102.9
Q ss_pred eEEEEeCCeEEEEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCc---eEEEEE
Q 001387 684 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTF---EFISTY 760 (1088)
Q Consensus 684 ~l~~~~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~---~~i~~~ 760 (1088)
.|++++.+.++...++... ....++-...|..++|++..+.+.++-.. ...|.-+++.+. ......
T Consensus 3 ~ll~~~~~~I~~i~~~~~~--~~~~~~~~~~p~g~~~d~~~~~ly~~D~~---------~~~I~~~~~~g~~~~~~~~~~ 71 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSE--YTSLIPNLRNVVALDTEVASNRIYWSDLS---------QRMICSTQLDRAHGVSSYDTV 71 (316)
T ss_dssp EEEEECBSSEEEEETTSCC--CEEEECSCSSEEEEEEETTTTEEEEEETT---------TTEEEEEEC--------CEEE
T ss_pred EEEEECCCeEEEEECCCcc--eEehhcCCCceEEEEEEeCCCEEEEEECC---------CCcEEEEECCCCCCCcccEEE
Confidence 3566677776655544432 23345666778889999876655555322 235666665431 111111
Q ss_pred ECC-CCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEecc--ccCeEEE
Q 001387 761 PLD-TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNA--FNGKLLA 837 (1088)
Q Consensus 761 ~~~-~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~--~~g~Lv~ 837 (1088)
++ ....+..++. ...+...++.- ...++|.+++......+.+..... ..+.+|+. -+|+|++
T Consensus 72 -~~~~~~~p~glav---d~~~~~ly~~d----------~~~~~I~~~~~~g~~~~~~~~~~~-~~P~~iavdp~~g~ly~ 136 (316)
T 1ijq_A 72 -ISRDIQAPDGLAV---DWIHSNIYWTD----------SVLGTVSVADTKGVKRKTLFRENG-SKPRAIVVDPVHGFMYW 136 (316)
T ss_dssp -ECSSCSCCCEEEE---ETTTTEEEEEE----------TTTTEEEEEETTSSSEEEEEECTT-CCEEEEEEETTTTEEEE
T ss_pred -EeCCCCCcCEEEE---eecCCeEEEEE----------CCCCEEEEEeCCCCceEEEEECCC-CCcceEEeCCCCCEEEE
Confidence 11 1122223221 11112222211 134677777665444444433222 23455543 4677776
Q ss_pred EE-C--CEEEEEEeeeccCcccc--cccccccccceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEecc-CCCc
Q 001387 838 AI-N--QKIQLYKWMLRDDGTRE--LQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARD-YNAN 911 (1088)
Q Consensus 838 ~~-g--~~l~v~~~~~~~~~~~~--L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D-~~~~ 911 (1088)
+- | .+|+.+.. +|..+ +... .. ..+..+.++..+++|++.|....- +.+++.+......+... ....
T Consensus 137 ~d~~~~~~I~~~~~----dG~~~~~~~~~-~~-~~P~gla~d~~~~~lY~~D~~~~~-I~~~d~dg~~~~~~~~~~~~~~ 209 (316)
T 1ijq_A 137 TDWGTPAKIKKGGL----NGVDIYSLVTE-NI-QWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLA 209 (316)
T ss_dssp EECSSSCEEEEEET----TSCCEEEEECS-SC-SCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSCEEEEECTTTTS
T ss_pred EccCCCCeEEEEcC----CCCCeEEEEEC-CC-CCceEEEEeccCCEEEEEECCCCe-EEEEecCCCceEEEeecCCccC
Confidence 65 3 46665554 23221 2111 01 112233344347899999987653 34566554433344332 1222
Q ss_pred eeEEEEEeeCceEEEEccCCcEEEEeeC
Q 001387 912 WMSAVEILDDDIYLGAENNFNLFTVRKN 939 (1088)
Q Consensus 912 ~v~~~~~l~~~~~l~~D~~gnl~~l~~~ 939 (1088)
+..++.+ +++.+..+|..++ .+.+++
T Consensus 210 ~P~giav-~~~~ly~~d~~~~-~V~~~~ 235 (316)
T 1ijq_A 210 HPFSLAV-FEDKVFWTDIINE-AIFSAN 235 (316)
T ss_dssp SEEEEEE-ETTEEEEEETTTT-EEEEEE
T ss_pred CcEEEEE-ECCEEEEEECCCC-eEEEEe
Confidence 3334433 5677778886433 334444
No 186
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=75.45 E-value=94 Score=33.50 Aligned_cols=142 Identities=13% Similarity=0.161 Sum_probs=74.8
Q ss_pred CeEEEEEEcCCCCe-EEEEEe--C-CCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEE--eCCCceEE---EEEE
Q 001387 691 GELTIGTIDDIQKL-HIRSIP--L-GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLL--DDQTFEFI---STYP 761 (1088)
Q Consensus 691 ~~l~i~~l~~~~~~-~~~~i~--l-~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~li--d~~t~~~i---~~~~ 761 (1088)
+.+.+..++...++ ....++ . +..|+.++++|+.+.++++.... ..+.++ |+.+++.. ..+.
T Consensus 167 ~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~---------~~v~v~~~~~~~g~~~~~~~~~~ 237 (365)
T 1jof_A 167 NKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAG---------NRICEYVIDPATHMPVYTHHSFP 237 (365)
T ss_dssp TEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTT---------TEEEEEEECTTTCCEEEEEEEEE
T ss_pred CEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCC---------CeEEEEEEeCCCCcEEEccceEE
Confidence 45555555521122 233444 3 56799999999998776664321 345665 44455432 2333
Q ss_pred -CCCC----c-------eEeEEEEEE-EcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEe-CCeEEEEEE-EEe-cCce
Q 001387 762 -LDTF----E-------YGCSILSCS-FSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE-DGKLQLIAE-KET-KGAV 825 (1088)
Q Consensus 762 -~~~~----E-------~v~si~~~~-~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~-~~kl~~~~~-~~~-~g~v 825 (1088)
++.+ . .+.+ +. +..+++ +++++.... +....|+|.+|++. .++++.+.. ... ...+
T Consensus 238 ~~~~~~~g~~~~~~~~~~~~~---i~~~spdG~-~l~v~~~~~----~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~ 309 (365)
T 1jof_A 238 LIPPGIPDRDPETGKGLYRAD---VCALTFSGK-YMFASSRAN----KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGG 309 (365)
T ss_dssp SSCTTCCCBCTTTSSBSEEEE---EEEECTTSS-EEEEEEEES----STTSCCEEEEEEECTTSCEEEEEEEEECSSCCT
T ss_pred cCCCCcCCccccccccccccc---EEEECCCCC-EEEEECCCC----CCCCCCeEEEEEECCCCCEEEeeeeeecCCCCc
Confidence 3222 1 2333 34 454444 555554321 12345799999997 567765432 222 2234
Q ss_pred eEec--cc--cC-eEEEEEC--CEEEEEEee
Q 001387 826 YSLN--AF--NG-KLLAAIN--QKIQLYKWM 849 (1088)
Q Consensus 826 ~ai~--~~--~g-~Lv~~~g--~~l~v~~~~ 849 (1088)
.+++ +- +| +|+++.. ++|.+|+++
T Consensus 310 ~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 310 HSNAVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp TCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred ccceecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence 4433 32 34 5655542 689999875
No 187
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=75.21 E-value=1e+02 Score=33.70 Aligned_cols=81 Identities=11% Similarity=0.024 Sum_probs=49.4
Q ss_pred EEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCC
Q 001387 718 ICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENE 797 (1088)
Q Consensus 718 i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~ 797 (1088)
+.++++.+.+.|+...............|.+||..+++++.++.+.. .+.++ .+..+++..++++..
T Consensus 272 ~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~--~p~~i---~~s~Dg~~~l~v~~~-------- 338 (373)
T 2mad_H 272 VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH--DVDAI---SVAQDGGPDLYALSA-------- 338 (373)
T ss_pred EEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC--CcCeE---EECCCCCeEEEEEcC--------
Confidence 67788777666654321000001123579999999999999997765 33333 345556645655431
Q ss_pred CcceEEEEEEEeCCe
Q 001387 798 PTKGRILVFIVEDGK 812 (1088)
Q Consensus 798 ~~~Gri~v~~i~~~k 812 (1088)
..|.|.+++...++
T Consensus 339 -~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 339 -GTEVLHIYDAGAGD 352 (373)
T ss_pred -CCCeEEEEECCCCC
Confidence 23789999876544
No 188
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=74.85 E-value=88 Score=32.91 Aligned_cols=226 Identities=9% Similarity=-0.011 Sum_probs=110.6
Q ss_pred eEEEEeCCeEEEEEEcCCCCeEEEEEeC--CCccCeEEEecCCCEEEEEEeecC-CCcCcceeEEEEEEeCCC--ceEEE
Q 001387 684 SLAIAKEGELTIGTIDDIQKLHIRSIPL--GEHPRRICHQEQSRTFAICSLKNQ-SCAEESEMHFVRLLDDQT--FEFIS 758 (1088)
Q Consensus 684 ~l~~~~~~~l~i~~l~~~~~~~~~~i~l--~~tp~~i~y~~~~~~~~v~~~~~~-~~~~~~~~s~l~lid~~t--~~~i~ 758 (1088)
.+++.-++.+.+..... .+|.....|. .+.-..++. ...+.|++...... ..........+..+|+.+ |+.+.
T Consensus 6 ~l~~~GG~~~~~yd~~~-~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 6 LIFMISEEGAVAYDPAA-NECYCASLSSQVPKNHVSLVT-KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEEETTEEEEEETTT-TEEEEEECCCCSCSSEEEEEC-TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEEcCCceEEECCCC-CeEecCCCCCCCCccceEEEE-ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 34444555555544433 3576533322 223333333 35567777664221 111122345588889865 54443
Q ss_pred EEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccccCeEEEE
Q 001387 759 TYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAA 838 (1088)
Q Consensus 759 ~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~g~Lv~~ 838 (1088)
. ++..-.-.++.. + +...+++|..... +.......++.|+...++.+.+......-.-.+.+.++++|++.
T Consensus 84 ~--~p~~r~~~~~~~--~---~~~lyv~GG~~~~--~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 154 (315)
T 4asc_A 84 P--LPSPRCLFGLGE--A---LNSIYVVGGREIK--DGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVI 154 (315)
T ss_dssp C--BSSCEESCEEEE--E---TTEEEEECCEESS--TTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEE
T ss_pred C--CCcchhceeEEE--E---CCEEEEEeCCcCC--CCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEE
Confidence 2 221111112222 2 3566777754321 12235567888888877777665432222223445567887766
Q ss_pred ECC--------EEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEE-EEeccc---cEEEEEEeccCCeEEEEec
Q 001387 839 INQ--------KIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIV-VGDLMK---SISLLIYKHEEGAIEERAR 906 (1088)
Q Consensus 839 ~g~--------~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~-vgD~~~---Sv~~~~~~~~~~~l~~~~~ 906 (1088)
-|. .+.+|+. .. .+++ ........-...++.+.++.|+ +|-... .-.+..|+.+.++-..++.
T Consensus 155 GG~~~~~~~~~~~~~yd~--~~-~~W~--~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 229 (315)
T 4asc_A 155 GGKGSDRKCLNKMCVYDP--KK-FEWK--ELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA 229 (315)
T ss_dssp CCBCTTSCBCCCEEEEET--TT-TEEE--ECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC
T ss_pred eCCCCCCcccceEEEEeC--CC-CeEE--ECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCC
Confidence 553 4555553 21 2222 2222211111122334566554 454322 1235678888888888887
Q ss_pred cCCCceeEEEEEeeCceEE
Q 001387 907 DYNANWMSAVEILDDDIYL 925 (1088)
Q Consensus 907 D~~~~~v~~~~~l~~~~~l 925 (1088)
-+.+|.-.++..+++..++
T Consensus 230 ~p~~r~~~~~~~~~~~l~v 248 (315)
T 4asc_A 230 FPQERSSLSLVSLVGTLYA 248 (315)
T ss_dssp CSSCCBSCEEEEETTEEEE
T ss_pred CCCcccceeEEEECCEEEE
Confidence 6777766555555554443
No 189
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=74.83 E-value=77 Score=32.19 Aligned_cols=105 Identities=9% Similarity=-0.064 Sum_probs=54.0
Q ss_pred CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeC
Q 001387 713 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVL 792 (1088)
Q Consensus 713 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~ 792 (1088)
..+..+.++|+.+.+++.+... ....+..++..+.+. . .+...+. .+..+.+..+ ..++++++....
T Consensus 173 ~~~~~~~~s~dg~~l~~~~~~~-------~~~~i~~~~~~~~~~-~--~~~~~~~--~~~~~~~s~d-g~~l~~~~~~~~ 239 (297)
T 2ojh_A 173 GRNDGPDYSPDGRWIYFNSSRT-------GQMQIWRVRVDGSSV-E--RITDSAY--GDWFPHPSPS-GDKVVFVSYDAD 239 (297)
T ss_dssp SCEEEEEECTTSSEEEEEECTT-------SSCEEEEEETTSSCE-E--ECCCCSE--EEEEEEECTT-SSEEEEEEEETT
T ss_pred CccccceECCCCCEEEEEecCC-------CCccEEEECCCCCCc-E--EEecCCc--ccCCeEECCC-CCEEEEEEcCCC
Confidence 3456778888888776665422 123455555443332 1 2333332 2223344443 456666654321
Q ss_pred CC-CCCCcceEEEEEEEeCCeEEEEEEE-EecCceeEecc
Q 001387 793 PE-ENEPTKGRILVFIVEDGKLQLIAEK-ETKGAVYSLNA 830 (1088)
Q Consensus 793 ~~-e~~~~~Gri~v~~i~~~kl~~~~~~-~~~g~v~ai~~ 830 (1088)
.. ......++|++|++..++.+.+... ...+.+.+++-
T Consensus 240 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 279 (297)
T 2ojh_A 240 VFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNW 279 (297)
T ss_dssp CCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCB
T ss_pred CCcccccCceEEEEEecCCCCceeeeccCCCCcccccceE
Confidence 00 0111457899998877666555543 45667776653
No 190
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=74.53 E-value=90 Score=32.86 Aligned_cols=157 Identities=12% Similarity=0.024 Sum_probs=77.7
Q ss_pred ccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCC
Q 001387 714 HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLP 793 (1088)
Q Consensus 714 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~ 793 (1088)
.|..++++++.+++++... ...|..+|+.+.+..... ......+.++. +..++ . +.|++...
T Consensus 46 ~~~~~~~~~~g~l~~~~~~----------~~~i~~~d~~~~~~~~~~-~~~~~~~~~i~---~~~dg-~-l~v~~~~~-- 107 (333)
T 2dg1_A 46 QLEGLNFDRQGQLFLLDVF----------EGNIFKINPETKEIKRPF-VSHKANPAAIK---IHKDG-R-LFVCYLGD-- 107 (333)
T ss_dssp CEEEEEECTTSCEEEEETT----------TCEEEEECTTTCCEEEEE-ECSSSSEEEEE---ECTTS-C-EEEEECTT--
T ss_pred cccCcEECCCCCEEEEECC----------CCEEEEEeCCCCcEEEEe-eCCCCCcceEE---ECCCC-c-EEEEeCCC--
Confidence 5677888888876554432 247888898776654322 23345555554 33333 3 44444211
Q ss_pred CCCCCcceEEEEEEEeCCeEEEEEE-EEecCceeEeccc-cCeEEEEECC------EEEEEEeeeccCcccccccccccc
Q 001387 794 EENEPTKGRILVFIVEDGKLQLIAE-KETKGAVYSLNAF-NGKLLAAINQ------KIQLYKWMLRDDGTRELQSECGHH 865 (1088)
Q Consensus 794 ~e~~~~~Gri~v~~i~~~kl~~~~~-~~~~g~v~ai~~~-~g~Lv~~~g~------~l~v~~~~~~~~~~~~L~~~~~~~ 865 (1088)
....+.|++|+...++++.+.. ......+.+++.- +|+++++... .-.+|.++.. + .++.......
T Consensus 108 ---~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~~~~ 181 (333)
T 2dg1_A 108 ---FKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD--F-RTVTPIIQNI 181 (333)
T ss_dssp ---SSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT--S-CCEEEEEEEE
T ss_pred ---CCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCC--C-CEEEEeecCC
Confidence 1123678888766555552221 1122346665543 5778877652 3455565321 1 1222111100
Q ss_pred cceEEEEEEEeCCEEEEEeccc-cEEEEEE
Q 001387 866 GHILALYVQTRGDFIVVGDLMK-SISLLIY 894 (1088)
Q Consensus 866 ~~~~~~~l~~~~~~I~vgD~~~-Sv~~~~~ 894 (1088)
.....+.+...+++++++|..+ .+..+..
T Consensus 182 ~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~ 211 (333)
T 2dg1_A 182 SVANGIALSTDEKVLWVTETTANRLHRIAL 211 (333)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred CcccceEECCCCCEEEEEeCCCCeEEEEEe
Confidence 1112222233456788888654 4544433
No 191
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=72.65 E-value=1.3e+02 Score=34.98 Aligned_cols=134 Identities=10% Similarity=0.060 Sum_probs=74.9
Q ss_pred CCe-EEEEe---CCeEEEEEEcCCC----------CeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEE
Q 001387 682 PDS-LAIAK---EGELTIGTIDDIQ----------KLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVR 747 (1088)
Q Consensus 682 ~~~-l~~~~---~~~l~i~~l~~~~----------~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~ 747 (1088)
||+ .++++ .+.+.+..+.... .-....+++|.-|+.++|++..+.|+.+..+ +.+.
T Consensus 286 PDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ld----------sqV~ 355 (595)
T 1fwx_A 286 PDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLD----------SQVV 355 (595)
T ss_dssp TTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTT----------TEEE
T ss_pred CCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecC----------CcEE
Confidence 443 44444 4667776666431 2367789999999999999988555554333 3455
Q ss_pred EEeCCC----------ceEEEEEECC--CCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcce-----EEEEEEEeC
Q 001387 748 LLDDQT----------FEFISTYPLD--TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKG-----RILVFIVED 810 (1088)
Q Consensus 748 lid~~t----------~~~i~~~~~~--~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~G-----ri~v~~i~~ 810 (1088)
.+|-.+ ++++++.+.. ++....++. ..++ ....++++...+.. +.. ..-| .-.+|+|..
T Consensus 356 kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g-~t~~-~DGk~l~~~Nk~sk-dr~-~~~gp~~~~~~ql~dis~ 431 (595)
T 1fwx_A 356 KWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMG-ETLD-ATNDWLVCLSKFSK-DRF-LNVGPLKPENDQLIDISG 431 (595)
T ss_dssp EEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTT-TSTT-CCSSEEEEEESCCT-TSS-CCCCSSCCEEEEEEECSS
T ss_pred EEEhhHhhhhhcccccceeEEEeecccccccceeccc-eEeC-CCCCEEEEcCCCCc-ccc-ccCCCCCCCcceEEEcCC
Confidence 555433 5677776643 222111110 0111 12456766655421 110 0011 117789988
Q ss_pred CeEEEEEEEEecCceeEec
Q 001387 811 GKLQLIAEKETKGAVYSLN 829 (1088)
Q Consensus 811 ~kl~~~~~~~~~g~v~ai~ 829 (1088)
+++++++....-+-+....
T Consensus 432 ~~m~lv~d~p~~~ePh~~~ 450 (595)
T 1fwx_A 432 DKMVLVHDGPTFAEPHDAI 450 (595)
T ss_dssp SSCEEEEEEEESSCCCCEE
T ss_pred CcEEEEEEEcCCCCCCceE
Confidence 8999999887754444433
No 192
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=72.15 E-value=1.1e+02 Score=32.63 Aligned_cols=130 Identities=12% Similarity=0.015 Sum_probs=63.2
Q ss_pred ceEEEEEEEeCCeEEEEEEEEecCceeEe--ccccCeEEEEE-C--CEEEEEEeeeccCccc--ccccccccccceEEEE
Q 001387 800 KGRILVFIVEDGKLQLIAEKETKGAVYSL--NAFNGKLLAAI-N--QKIQLYKWMLRDDGTR--ELQSECGHHGHILALY 872 (1088)
Q Consensus 800 ~Gri~v~~i~~~kl~~~~~~~~~g~v~ai--~~~~g~Lv~~~-g--~~l~v~~~~~~~~~~~--~L~~~~~~~~~~~~~~ 872 (1088)
.++|.+++.+....+.+...... .+..| .+.+|+|+++. | .+|+.+.. +|.. .+... .. ..+..+.
T Consensus 100 ~~~I~~~~~dG~~~~~l~~~~~~-~P~giavdp~~g~ly~td~~~~~~I~r~~~----dG~~~~~~~~~-~l-~~Pngla 172 (318)
T 3sov_A 100 TNRIEVSNLDGSLRKVLFWQELD-QPRAIALDPSSGFMYWTDWGEVPKIERAGM----DGSSRFIIINS-EI-YWPNGLT 172 (318)
T ss_dssp TTEEEEEETTSCSCEEEECSSCS-SEEEEEEEGGGTEEEEEECSSSCEEEEEET----TSCSCEEEECS-SC-SCEEEEE
T ss_pred CCEEEEEECCCCcEEEEEeCCCC-CccEEEEeCCCCEEEEEecCCCCEEEEEEc----CCCCeEEEEEC-CC-CCccEEE
Confidence 45666666543333333322222 23443 34568888877 3 56665553 2322 12111 11 1123344
Q ss_pred EEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCceEEEEccCCcEEEEeeCC
Q 001387 873 VQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNS 940 (1088)
Q Consensus 873 l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~~ 940 (1088)
++..+++|+++|....- +.+++.+......+..... .+..++.+ +++.++.+|..++ .+.++++
T Consensus 173 vd~~~~~lY~aD~~~~~-I~~~d~dG~~~~~~~~~~~-~~P~glav-~~~~lywtd~~~~-~V~~~~~ 236 (318)
T 3sov_A 173 LDYEEQKLYWADAKLNF-IHKSNLDGTNRQAVVKGSL-PHPFALTL-FEDILYWTDWSTH-SILACNK 236 (318)
T ss_dssp EETTTTEEEEEETTTTE-EEEEETTSCSCEEEECSCC-SCEEEEEE-ETTEEEEEETTTT-EEEEEET
T ss_pred EeccCCEEEEEECCCCE-EEEEcCCCCceEEEecCCC-CCceEEEE-eCCEEEEEecCCC-eEEEEEC
Confidence 44457899999987763 4556655433333333221 22223333 5667777776443 3334443
No 193
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=70.72 E-value=1e+02 Score=31.95 Aligned_cols=160 Identities=11% Similarity=0.051 Sum_probs=80.2
Q ss_pred eEEEEEEeCCC--ceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEE
Q 001387 743 MHFVRLLDDQT--FEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKE 820 (1088)
Q Consensus 743 ~s~l~lid~~t--~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~ 820 (1088)
...+..+|+.+ |+.+......... .++.. + +..++++|-... ......++.|+...++.+.+....
T Consensus 127 ~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~--~---~~~iyv~GG~~~-----~~~~~~~~~~d~~~~~W~~~~~~p 194 (301)
T 2vpj_A 127 HTSMERYDPNIDQWSMLGDMQTAREG--AGLVV--A---SGVIYCLGGYDG-----LNILNSVEKYDPHTGHWTNVTPMA 194 (301)
T ss_dssp CCEEEEEETTTTEEEEEEECSSCCBS--CEEEE--E---TTEEEEECCBCS-----SCBCCCEEEEETTTTEEEEECCCS
T ss_pred cceEEEEcCCCCeEEECCCCCCCccc--ceEEE--E---CCEEEEECCCCC-----CcccceEEEEeCCCCcEEeCCCCC
Confidence 45688888754 6666543222222 22222 2 245777775321 124567888888877887775333
Q ss_pred ecCceeEeccccCeEEEEEC-------CEEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEE-EEeccc---cE
Q 001387 821 TKGAVYSLNAFNGKLLAAIN-------QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIV-VGDLMK---SI 889 (1088)
Q Consensus 821 ~~g~v~ai~~~~g~Lv~~~g-------~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~-vgD~~~---Sv 889 (1088)
..-.-.+++.++++|++.-| +.+.+|+. . ..+++. .......-...++.+.++.|+ +|-... .-
T Consensus 195 ~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~--~-~~~W~~--~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~ 269 (301)
T 2vpj_A 195 TKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNI--R-TDSWTT--VTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLS 269 (301)
T ss_dssp SCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEET--T-TTEEEE--ECCCSSCCBSCEEEEETTEEEEECCBCSSSBEE
T ss_pred cccccceEEEECCEEEEEeCCCCCcccceEEEEeC--C-CCcEEE--CCCCCCcccceeEEEECCEEEEEcCcCCCcccc
Confidence 22223355556788776654 24566553 2 122222 211111111122334566554 453321 13
Q ss_pred EEEEEeccCCeEEEEeccCCCceeEEEEEe
Q 001387 890 SLLIYKHEEGAIEERARDYNANWMSAVEIL 919 (1088)
Q Consensus 890 ~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l 919 (1088)
.+..|+.+.++-..+..-+.+|.-.++..+
T Consensus 270 ~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 299 (301)
T 2vpj_A 270 SIECYDPIIDSWEVVTSMGTQRCDAGVCVL 299 (301)
T ss_dssp EEEEEETTTTEEEEEEEEEEEEESCEEEEE
T ss_pred cEEEEcCCCCeEEEcCCCCcccccceEEEe
Confidence 456788887777777655555544344333
No 194
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=70.70 E-value=4.6 Score=32.13 Aligned_cols=29 Identities=10% Similarity=0.299 Sum_probs=25.3
Q ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Q 001387 1059 SRTRMDEISKTMNVSVEELCKRVEELTRL 1087 (1088)
Q Consensus 1059 ~~~~q~~i~~~~~~~~~~i~~~l~~l~~~ 1087 (1088)
....+.+||++.|++++|+.++|.....|
T Consensus 34 ~~SR~~RIA~GSG~~v~eVn~Llkqf~~m 62 (69)
T 1dul_A 34 KGSRKRRIAAGSGMQVQDVNRLLKQFDDM 62 (69)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999887654
No 195
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=70.62 E-value=60 Score=35.79 Aligned_cols=101 Identities=16% Similarity=0.081 Sum_probs=61.2
Q ss_pred EEEEEECCCEEEEEECCCeEEEEEEcC-cEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCC
Q 001387 491 VNVATANASQVLLATGGGHLVYLEIGD-GILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLN 569 (1088)
Q Consensus 491 I~~a~~~~~~lvv~~~~~~l~~~~~~~-~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~ 569 (1088)
|.+.+.++.+++++ .++.+.++++.+ .+-.... .+...+.++...+ .. +++++- +|.+.+|++.+..
T Consensus 90 V~~l~fd~~~L~v~-~~~~l~v~dv~sl~~~~~~~--~~~~~v~~i~~~~-------p~-~av~~~-dG~L~v~dl~~~~ 157 (388)
T 1xip_A 90 VIFVCFHGDQVLVS-TRNALYSLDLEELSEFRTVT--SFEKPVFQLKNVN-------NT-LVILNS-VNDLSALDLRTKS 157 (388)
T ss_dssp EEEEEEETTEEEEE-ESSEEEEEESSSTTCEEEEE--ECSSCEEEEEECS-------SE-EEEEET-TSEEEEEETTTCC
T ss_pred eeEEEECCCEEEEE-cCCcEEEEEchhhhccCccc--eeecceeeEEecC-------CC-EEEEEC-CCCEEEEEccCCc
Confidence 77666677888888 567787877754 1111122 2233355544321 22 666655 9999999998654
Q ss_pred ceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEec
Q 001387 570 LITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNM 612 (1088)
Q Consensus 570 ~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~ 612 (1088)
... +. ...++++..+.+ +.+|..||.+..|..+.
T Consensus 158 ~~~---~~--~~Vs~v~WSpkG----~~vg~~dg~i~~~~~~~ 191 (388)
T 1xip_A 158 TKQ---LA--QNVTSFDVTNSQ----LAVLLKDRSFQSFAWRN 191 (388)
T ss_dssp EEE---EE--ESEEEEEECSSE----EEEEETTSCEEEEEEET
T ss_pred ccc---cc--CCceEEEEcCCc----eEEEEcCCcEEEEcCCC
Confidence 321 11 133455444322 78899999999996653
No 196
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=70.60 E-value=1.8e+02 Score=34.72 Aligned_cols=118 Identities=9% Similarity=-0.054 Sum_probs=59.9
Q ss_pred ccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCC
Q 001387 714 HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLP 793 (1088)
Q Consensus 714 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~ 793 (1088)
.+..+.+ |+.+.+++.+.... .....|.++|..+++....+.-.....+..+..+.+..+++ +++.+..
T Consensus 288 ~~~~~~~-pDg~~l~~~~~~~~-----~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~---- 356 (741)
T 2ecf_A 288 YLARVNW-RDPQHLSFQRQSRD-----QKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSER---- 356 (741)
T ss_dssp EEEEEEE-EETTEEEEEEEETT-----SSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC-EEEEECT----
T ss_pred EEEEEEe-CCCCEEEEEEeccc-----CCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe-EEEEecC----
Confidence 4566788 88888877765321 13478999999887765444322211110111223444445 5555421
Q ss_pred CCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc--cC-eEEEEECC----EEEEEEee
Q 001387 794 EENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF--NG-KLLAAINQ----KIQLYKWM 849 (1088)
Q Consensus 794 ~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~--~g-~Lv~~~g~----~l~v~~~~ 849 (1088)
+ ...+|+.++... +.+.+. .....|.++..+ +| +|+++.+. .+.+|.++
T Consensus 357 --~--g~~~l~~~~~~~-~~~~l~--~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 357 --T--GFQHLYRIDSKG-KAAALT--HGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp --T--SSCEEEEECSSS-CEEESC--CSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred --C--CccEEEEEcCCC-Ceeeee--ecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 1 123555554333 333222 234556655434 34 56554432 67788874
No 197
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=70.05 E-value=1.2e+02 Score=32.20 Aligned_cols=105 Identities=12% Similarity=0.190 Sum_probs=54.9
Q ss_pred ccCeEEEec-CCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCC-C--------ceEeEEEEEEEcCCCceE
Q 001387 714 HPRRICHQE-QSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDT-F--------EYGCSILSCSFSDDSNVY 783 (1088)
Q Consensus 714 tp~~i~y~~-~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~-~--------E~v~si~~~~~~~~~~~~ 783 (1088)
.|..|+++| ..++|+.-+.. ...|+.+|+ +.+.+..+.-.. . ..+.++ .+..++..+
T Consensus 144 ~P~~ia~~~~~g~lyv~d~~~---------~~~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gi---a~d~~~g~l 210 (329)
T 3fvz_A 144 QPTDVAVEPSTGAVFVSDGYC---------NSRIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSL---ALVPHLDQL 210 (329)
T ss_dssp SEEEEEECTTTCCEEEEECSS---------CCEEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEE---EEETTTTEE
T ss_pred CCcEEEEeCCCCeEEEEeCCC---------CCeEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEE---EEECCCCEE
Confidence 588999998 56665544212 257888885 455554442111 1 123333 333332444
Q ss_pred EEEEeeeeCCCCCCCcceEEEEEEEeCCeE-EEEEEEEecCceeEeccccCeEEEEECC
Q 001387 784 YCVGTAYVLPEENEPTKGRILVFIVEDGKL-QLIAEKETKGAVYSLNAFNGKLLAAINQ 841 (1088)
Q Consensus 784 i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl-~~~~~~~~~g~v~ai~~~~g~Lv~~~g~ 841 (1088)
++... ..++|.+|+...+++ +.+......+.+++++.-.|.++.+.|+
T Consensus 211 ~v~d~----------~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~ 259 (329)
T 3fvz_A 211 CVADR----------ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGK 259 (329)
T ss_dssp EEEET----------TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECC
T ss_pred EEEEC----------CCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCC
Confidence 44332 346888888763443 3222222344566665445666666554
No 198
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=70.04 E-value=26 Score=39.51 Aligned_cols=122 Identities=16% Similarity=0.127 Sum_probs=74.7
Q ss_pred EEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCc--------eEEEEEEC-CC-CceEeEEEEEEE
Q 001387 707 RSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTF--------EFISTYPL-DT-FEYGCSILSCSF 776 (1088)
Q Consensus 707 ~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~--------~~i~~~~~-~~-~E~v~si~~~~~ 776 (1088)
.+++++..+..++++|+.+.++|++... ..-..|+++|..+. +.+..+.. .. ...+.+++ +
T Consensus 87 ~~~~~~~~v~~l~~spdg~~lav~~~sg------s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~---~ 157 (434)
T 2oit_A 87 LLVPMKFPIHHLALSCDNLTLSACMMSS------EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMK---W 157 (434)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEEEET------TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEE---E
T ss_pred ccccCCCcccEEEEcCCCCEEEEEEecc------CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEE---E
Confidence 4577778899999999999888753211 01367888886443 23333333 22 33455543 4
Q ss_pred cCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cC-eEEEEEC-CEEEEEEe
Q 001387 777 SDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NG-KLLAAIN-QKIQLYKW 848 (1088)
Q Consensus 777 ~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g-~Lv~~~g-~~l~v~~~ 848 (1088)
......+++.|+ ..|.|.+|++..++. ........+.|++++-- +| +|+++.. ++|++|+.
T Consensus 158 ~p~~~~~las~s----------~Dg~v~iwD~~~~~~-~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~ 221 (434)
T 2oit_A 158 NPTVPSMVAVCL----------ADGSIAVLQVTETVK-VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLP 221 (434)
T ss_dssp CSSCTTEEEEEE----------TTSCEEEEEESSSEE-EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred CCCCCCEEEEEE----------CCCeEEEEEcCCCcc-eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEcc
Confidence 443466788776 347899999986633 23333457789888743 34 5655544 57888764
No 199
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=68.25 E-value=1.5e+02 Score=32.92 Aligned_cols=70 Identities=16% Similarity=0.120 Sum_probs=48.4
Q ss_pred CcEEEEEECC---CEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEEC
Q 001387 489 YSVNVATANA---SQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL 565 (1088)
Q Consensus 489 ~~I~~a~~~~---~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l 565 (1088)
..|.+.+.++ ..++.+..++.+.+.++..+... .........|.|+++.+ .+.++++|.. ||.+.+|++
T Consensus 150 ~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~-~~~~~~~~~v~~v~wsp------dg~~lasgs~-dg~v~iwd~ 221 (434)
T 2oit_A 150 GMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV-CATLPSTVAVTSVCWSP------KGKQLAVGKQ-NGTVVQYLP 221 (434)
T ss_dssp GSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE-EEEECGGGCEEEEEECT------TSSCEEEEET-TSCEEEECT
T ss_pred CceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce-eeccCCCCceeEEEEcC------CCCEEEEEcC-CCcEEEEcc
Confidence 4577777653 35666667888888787664321 12222356799999975 2578888887 999999998
Q ss_pred C
Q 001387 566 P 566 (1088)
Q Consensus 566 ~ 566 (1088)
.
T Consensus 222 ~ 222 (434)
T 2oit_A 222 T 222 (434)
T ss_dssp T
T ss_pred C
Confidence 7
No 200
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=68.11 E-value=78 Score=32.62 Aligned_cols=115 Identities=10% Similarity=0.051 Sum_probs=67.8
Q ss_pred EEEEEEEEecCce--eEeccccCeEEEEECC----EEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEEEEecc
Q 001387 813 LQLIAEKETKGAV--YSLNAFNGKLLAAINQ----KIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLM 886 (1088)
Q Consensus 813 l~~~~~~~~~g~v--~ai~~~~g~Lv~~~g~----~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~ 886 (1088)
.+++.+..+.... ..+..-++.|+.+.|. .|..++++ .+ ++.+........++..+...+++|++.+-.
T Consensus 31 ~~vv~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~---Tg--kv~~~~~l~~~~FgeGit~~g~~ly~ltw~ 105 (262)
T 3nol_A 31 YQIVHSYPHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIE---SG--KTLQQIELGKRYFGEGISDWKDKIVGLTWK 105 (262)
T ss_dssp EEEEEEEECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTT---TC--CEEEEEECCTTCCEEEEEEETTEEEEEESS
T ss_pred eEEEEEecCCCCcccceEEEECCEEEEECCCCCCceEEEEECC---CC--cEEEEEecCCccceeEEEEeCCEEEEEEee
Confidence 4555555554433 4555447889999886 67665542 22 333332333344566677789999999988
Q ss_pred ccEEEEEEeccCCeE-EEEeccCCCceeEEEEEeeCceEEEEccCCcEEEEe
Q 001387 887 KSISLLIYKHEEGAI-EERARDYNANWMSAVEILDDDIYLGAENNFNLFTVR 937 (1088)
Q Consensus 887 ~Sv~~~~~~~~~~~l-~~~~~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~ 937 (1088)
.+.. +.|+.+..++ ..+.-.... |..+ -+.+.++++|..+.|++++
T Consensus 106 ~~~v-~v~D~~t~~~~~ti~~~~eG-~glt---~dg~~L~~SdGs~~i~~iD 152 (262)
T 3nol_A 106 NGLG-FVWNIRNLRQVRSFNYDGEG-WGLT---HNDQYLIMSDGTPVLRFLD 152 (262)
T ss_dssp SSEE-EEEETTTCCEEEEEECSSCC-CCEE---ECSSCEEECCSSSEEEEEC
T ss_pred CCEE-EEEECccCcEEEEEECCCCc-eEEe---cCCCEEEEECCCCeEEEEc
Confidence 8864 5688765443 333333322 3322 2445788888777677664
No 201
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=67.61 E-value=1.1e+02 Score=30.90 Aligned_cols=230 Identities=13% Similarity=0.098 Sum_probs=105.6
Q ss_pred cceEEEEecCCeEEEeeecCCeEEEEEeeCCCCCCCcEEEEeeeccCCceeeeEEeccCCCCCceEEEEeeCCCCceEEE
Q 001387 302 IASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRI 381 (1088)
Q Consensus 302 ~~s~l~~l~~~~lf~gS~~gds~l~~~~~~~~~~~~~~~~~~~l~n~~Pi~D~~~~~~~~~~~~~l~~~sG~g~~g~L~~ 381 (1088)
.|..++.-.++.+|+.+..+++.++.+..+.. . .... .......+.++++.. ...|+++.+ .+.+..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~---~-~~~~-~~~~~~~p~~i~~~~-----~g~l~v~~~---~~~i~~ 91 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGST---G-TTVL-PFNGLYQPQGLAVDG-----AGTVYVTDF---NNRVVT 91 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC---------EEC-CCCSCCSCCCEEECT-----TCCEEEEET---TTEEEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCc---c-cceE-eeCCcCCcceeEECC-----CCCEEEEcC---CCEEEE
Confidence 67788877777888844456677888865321 1 1111 122223345565532 245887765 567777
Q ss_pred EecCCceeEEEeeeCCCcceEEEeecCCCCCCccEEEEEecCceEEEEecCCCceeee-ee------cceecc-ccceee
Q 001387 382 VRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEET-EI------EGFCSQ-TQTLFC 453 (1088)
Q Consensus 382 lr~gi~~~~~~~~~l~~v~~iw~l~~~~~~~~~~~lilS~~~~T~vl~~~~~~~~~e~-~~------~~f~~~-~~Ti~~ 453 (1088)
+...=... ......+....+.+.... ... ++++......|+.++.+...... .. .++..+ ...+++
T Consensus 92 ~d~~~~~~--~~~~~~~~~~p~~i~~~~---~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v 165 (270)
T 1rwi_B 92 LAAGSNNQ--TVLPFDGLNYPEGLAVDT---QGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYV 165 (270)
T ss_dssp ECTTCSCC--EECCCCSCSSEEEEEECT---TCC-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEE
T ss_pred EeCCCceE--eeeecCCcCCCcceEECC---CCC-EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEE
Confidence 65322211 112222323444443321 122 55554444455555443111111 11 111111 112333
Q ss_pred eecCCCeEEEEecCcEEEEecCCcceeeeeeCCCCCcEEEEEECC-CEEEEEEC-CCeEEEEEEcCcEEEEEeeccCCce
Q 001387 454 HDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANA-SQVLLATG-GGHLVYLEIGDGILTEVKHAQLEYE 531 (1088)
Q Consensus 454 ~~~~~~~ivQVt~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~~-~~lvv~~~-~~~l~~~~~~~~~l~~~~~~~l~~~ 531 (1088)
+... ...|..++.+.... ..........+...++++ ..+.++.. ++.+..+..+...........+ ..
T Consensus 166 ~~~~--------~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~-~~ 235 (270)
T 1rwi_B 166 TDTD--------NNRVVKLEAESNNQ-VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGL-NT 235 (270)
T ss_dssp EEGG--------GTEEEEECTTTCCE-EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSC-SC
T ss_pred EECC--------CCEEEEEecCCCce-EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCC-CC
Confidence 3322 23556665543211 111111113455555553 36666654 4556555433222111111111 34
Q ss_pred eEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCC
Q 001387 532 ISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD 567 (1088)
Q Consensus 532 is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~ 567 (1088)
+.++++.+ .. .+.|+.+.++.|.+|+++.
T Consensus 236 p~~i~~~~------~g-~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 236 PLAVAVDS------DR-TVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp EEEEEECT------TC-CEEEEEGGGTEEEEECCCG
T ss_pred ceeEEECC------CC-CEEEEECCCCEEEEEcCCC
Confidence 67787753 13 3777777789999999864
No 202
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=67.37 E-value=1.1e+02 Score=31.88 Aligned_cols=134 Identities=12% Similarity=0.117 Sum_probs=69.9
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccccCeEEEEEC-------CEEEEEEeeeccC
Q 001387 781 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAIN-------QKIQLYKWMLRDD 853 (1088)
Q Consensus 781 ~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~g~Lv~~~g-------~~l~v~~~~~~~~ 853 (1088)
...+++|.... ......++.|+...++.+.+......-.-.+.+.++++|++.-| +.+.+|+. ..
T Consensus 62 ~~lyv~GG~~~-----~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~--~~- 133 (302)
T 2xn4_A 62 GLVFAVGGFNG-----SLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNI--KS- 133 (302)
T ss_dssp TEEEEESCBCS-----SSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEET--TT-
T ss_pred CEEEEEeCcCC-----CccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeC--CC-
Confidence 56777775321 12335678888877777776543332223345556788776544 23444443 21
Q ss_pred cccccccccccccceEEEEEEEeCCEEEE-Ee-------ccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCceEE
Q 001387 854 GTRELQSECGHHGHILALYVQTRGDFIVV-GD-------LMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYL 925 (1088)
Q Consensus 854 ~~~~L~~~~~~~~~~~~~~l~~~~~~I~v-gD-------~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l 925 (1088)
.+++ ........-...++.+.++.|++ |- .... +..|+.+.++-..++.-+.+|.-.++..+++..++
T Consensus 134 ~~W~--~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~--~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv 209 (302)
T 2xn4_A 134 NEWF--HVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLST--VECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYA 209 (302)
T ss_dssp TEEE--EECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCC--EEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEE
T ss_pred CeEe--ecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccE--EEEEeCCCCcEEECCCCccccccccEEEECCEEEE
Confidence 2222 22212111111223445676655 32 2344 45688888888888766667765555555544444
Q ss_pred E
Q 001387 926 G 926 (1088)
Q Consensus 926 ~ 926 (1088)
.
T Consensus 210 ~ 210 (302)
T 2xn4_A 210 V 210 (302)
T ss_dssp E
T ss_pred E
Confidence 3
No 203
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=65.60 E-value=1.3e+02 Score=31.23 Aligned_cols=165 Identities=8% Similarity=-0.035 Sum_probs=83.4
Q ss_pred EEEEEEeCCC--ceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEe
Q 001387 744 HFVRLLDDQT--FEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKET 821 (1088)
Q Consensus 744 s~l~lid~~t--~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~ 821 (1088)
..+..+|+.+ |+.+.....+...+ ++.. + +..++++|-.. ........+++|+...++.+.+.....
T Consensus 70 ~~~~~~d~~~~~W~~~~~~p~~r~~~--~~~~--~---~~~iyv~GG~~----~~~~~~~~~~~~d~~~~~W~~~~~~p~ 138 (306)
T 3ii7_A 70 KRMDCYNVVKDSWYSKLGPPTPRDSL--AACA--A---EGKIYTSGGSE----VGNSALYLFECYDTRTESWHTKPSMLT 138 (306)
T ss_dssp CEEEEEETTTTEEEEEECCSSCCBSC--EEEE--E---TTEEEEECCBB----TTBSCCCCEEEEETTTTEEEEECCCSS
T ss_pred ceEEEEeCCCCeEEECCCCCccccce--eEEE--E---CCEEEEECCCC----CCCcEeeeEEEEeCCCCceEeCCCCcC
Confidence 4566677754 55554332222222 2222 2 24567777532 122344578888888777777644332
Q ss_pred cCceeEeccccCeEEEEEC-----------CEEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEEE-Eec----
Q 001387 822 KGAVYSLNAFNGKLLAAIN-----------QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVV-GDL---- 885 (1088)
Q Consensus 822 ~g~v~ai~~~~g~Lv~~~g-----------~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~v-gD~---- 885 (1088)
.-.-.+++.++++|++.-| +.+.+|+. .. .+++ ........-...++.+.+++|++ |-.
T Consensus 139 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~--~~-~~W~--~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~ 213 (306)
T 3ii7_A 139 QRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDP--AT-ETWT--ELCPMIEARKNHGLVFVKDKIFAVGGQNGLG 213 (306)
T ss_dssp CCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEET--TT-TEEE--EECCCSSCCBSCEEEEETTEEEEECCEETTE
T ss_pred CcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCC--CC-CeEE--ECCCccchhhcceEEEECCEEEEEeCCCCCC
Confidence 2222344556777776544 22445443 21 2222 22211111111223345665554 432
Q ss_pred -cccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCceEEE
Q 001387 886 -MKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLG 926 (1088)
Q Consensus 886 -~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l~ 926 (1088)
... +..|+.+.++-..++.-+.+|.-.++..+++..++.
T Consensus 214 ~~~~--~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~ 253 (306)
T 3ii7_A 214 GLDN--VEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVL 253 (306)
T ss_dssp EBCC--EEEEETTTTEEEECCCCSCCBSCCEEEEETTEEEEE
T ss_pred CCce--EEEeeCCCCcEEECCCCCCCccceeEEEECCEEEEE
Confidence 233 456888888888887667777665565565544443
No 204
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=64.13 E-value=1.5e+02 Score=31.29 Aligned_cols=185 Identities=10% Similarity=0.112 Sum_probs=90.9
Q ss_pred CccCeEEEecCCCEEEEEEeecCC---CcCc-----------ceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcC
Q 001387 713 EHPRRICHQEQSRTFAICSLKNQS---CAEE-----------SEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSD 778 (1088)
Q Consensus 713 ~tp~~i~y~~~~~~~~v~~~~~~~---~~~~-----------~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~ 778 (1088)
..|..++++++.+.|+........ ..+. .....|.++|+.+.+.+..+.-.....+..++ +..
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia---~d~ 100 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLS---IDT 100 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEE---ECT
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEE---ECC
Confidence 346678888877776544322110 0000 01246899999888876544322223444443 343
Q ss_pred CCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC--eEEEEEEE-------EecCceeEeccc--cCeEEEEEC---CEEE
Q 001387 779 DSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG--KLQLIAEK-------ETKGAVYSLNAF--NGKLLAAIN---QKIQ 844 (1088)
Q Consensus 779 ~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~--kl~~~~~~-------~~~g~v~ai~~~--~g~Lv~~~g---~~l~ 844 (1088)
+++ +++..+ ..++|+.|+.... .+..+... ..-..+..|+.- +|.|+++-+ ++|+
T Consensus 101 ~g~-l~v~d~----------~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~ 169 (329)
T 3fvz_A 101 DGN-YWVTDV----------ALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV 169 (329)
T ss_dssp TSC-EEEEET----------TTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred CCC-EEEEEC----------CCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence 333 444333 2467877765432 22222211 111145566644 578888763 5565
Q ss_pred EEEeeeccCccccccccccc---------ccceEEEEEEEe--CCEEEEEeccccEEEEEEeccCCe-EEEEeccCCCce
Q 001387 845 LYKWMLRDDGTRELQSECGH---------HGHILALYVQTR--GDFIVVGDLMKSISLLIYKHEEGA-IEERARDYNANW 912 (1088)
Q Consensus 845 v~~~~~~~~~~~~L~~~~~~---------~~~~~~~~l~~~--~~~I~vgD~~~Sv~~~~~~~~~~~-l~~~~~D~~~~~ 912 (1088)
+|+. +|. +...... .....|..+.+. ++.++|+|...+- +..|+.+..+ +..+........
T Consensus 170 ~~~~----~g~--~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~-I~~~~~~~G~~~~~~~~~~~~~~ 242 (329)
T 3fvz_A 170 QFSP----SGK--FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGR-IQCFKTDTKEFVREIKHASFGRN 242 (329)
T ss_dssp EECT----TSC--EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTE-EEEEETTTCCEEEEECCTTTTTC
T ss_pred EEcC----CCC--EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCE-EEEEECCCCcEEEEEeccccCCC
Confidence 5442 232 1111100 011124555554 4799999988774 4567876344 444433333334
Q ss_pred eEEEEE
Q 001387 913 MSAVEI 918 (1088)
Q Consensus 913 v~~~~~ 918 (1088)
+.++.+
T Consensus 243 ~~~~~~ 248 (329)
T 3fvz_A 243 VFAISY 248 (329)
T ss_dssp EEEEEE
T ss_pred cceeee
Confidence 444444
No 205
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=63.00 E-value=1.2e+02 Score=31.68 Aligned_cols=163 Identities=14% Similarity=0.101 Sum_probs=82.9
Q ss_pred EEEEEEeCCC--ceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEe
Q 001387 744 HFVRLLDDQT--FEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKET 821 (1088)
Q Consensus 744 s~l~lid~~t--~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~ 821 (1088)
..+..+|+.+ |+.+.....+... .++.. + +..++++|... ......++.|+...++.+.+.....
T Consensus 24 ~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~--~---~~~lyv~GG~~------~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 24 QSCRYFNPKDYSWTDIRCPFEKRRD--AACVF--W---DNVVYILGGSQ------LFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp TSEEEEETTTTEEEECCCCSCCCBS--CEEEE--E---TTEEEEECCBS------SSBCCEEEEEETTTTEEEEEECCSS
T ss_pred ceEEEecCCCCCEecCCCCCcccce--eEEEE--E---CCEEEEEeCCC------CCCcceEEEEeCCCCeEEECCCCCc
Confidence 3467788865 5555432222222 12222 2 24577777532 2345678888888778777654333
Q ss_pred cCceeEeccccCeEEEEECC--------EEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEEE-Eec-------
Q 001387 822 KGAVYSLNAFNGKLLAAINQ--------KIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVV-GDL------- 885 (1088)
Q Consensus 822 ~g~v~ai~~~~g~Lv~~~g~--------~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~v-gD~------- 885 (1088)
.-.-.+.+.++++|++.-|. .+.+|+. .. .+++ ........-...++.+.++.|++ |-.
T Consensus 91 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~--~~-~~W~--~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 165 (306)
T 3ii7_A 91 PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDT--RT-ESWH--TKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSG 165 (306)
T ss_dssp CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEET--TT-TEEE--EECCCSSCCBSCEEEEETTEEEEECCEESCTTTC
T ss_pred cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeC--CC-CceE--eCCCCcCCcceeEEEEECCEEEEECCCCCCCCcc
Confidence 22233455567887776553 2555553 21 2222 22212111111122345665554 422
Q ss_pred --cccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCceEEE
Q 001387 886 --MKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLG 926 (1088)
Q Consensus 886 --~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l~ 926 (1088)
... +..|+.+.++-..++.-+.+|.-.++..+++..++.
T Consensus 166 ~~~~~--~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~ 206 (306)
T 3ii7_A 166 RVLNS--CEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAV 206 (306)
T ss_dssp EECCC--EEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEE
T ss_pred cccce--EEEeCCCCCeEEECCCccchhhcceEEEECCEEEEE
Confidence 333 456888888888887666666555555554433443
No 206
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=62.77 E-value=1.5e+02 Score=30.96 Aligned_cols=139 Identities=13% Similarity=0.134 Sum_probs=71.2
Q ss_pred ceEEEEEeeeeC-CCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccccCeEEEEECC----------EEEEEEee
Q 001387 781 NVYYCVGTAYVL-PEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQ----------KIQLYKWM 849 (1088)
Q Consensus 781 ~~~i~VGT~~~~-~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~g~Lv~~~g~----------~l~v~~~~ 849 (1088)
...+++|..... .+........++.|+...++.+.+......-.-.+++.++++|++.-|. .+.+|+.
T Consensus 46 ~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~- 124 (315)
T 4asc_A 46 NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDR- 124 (315)
T ss_dssp CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEET-
T ss_pred CEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECC-
Confidence 556677764321 1122334455888887777776654322211123455567887776662 2455543
Q ss_pred eccCcccccccccccccceEEEEEEEeCCEEEE-Eec------cccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCc
Q 001387 850 LRDDGTRELQSECGHHGHILALYVQTRGDFIVV-GDL------MKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDD 922 (1088)
Q Consensus 850 ~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~v-gD~------~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~ 922 (1088)
.. .+++ ........-...++.+.++.|++ |-. .+. +..|+...++-..++.-+.+|...++..+++.
T Consensus 125 -~~-~~W~--~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~--~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~ 198 (315)
T 4asc_A 125 -LS-FKWG--ESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNK--MCVYDPKKFEWKELAPMQTARSLFGATVHDGR 198 (315)
T ss_dssp -TT-TEEE--ECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCC--EEEEETTTTEEEECCCCSSCCBSCEEEEETTE
T ss_pred -CC-CcEe--ECCCCCCcccceeEEEECCEEEEEeCCCCCCcccce--EEEEeCCCCeEEECCCCCCchhceEEEEECCE
Confidence 21 2222 22222111111223346665554 433 233 45688888888888766777766555555554
Q ss_pred eEEE
Q 001387 923 IYLG 926 (1088)
Q Consensus 923 ~~l~ 926 (1088)
.++.
T Consensus 199 iyv~ 202 (315)
T 4asc_A 199 IIVA 202 (315)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 207
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=61.61 E-value=1.5e+02 Score=30.62 Aligned_cols=168 Identities=12% Similarity=0.097 Sum_probs=83.3
Q ss_pred eEEEEEEeCCC--ceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEE
Q 001387 743 MHFVRLLDDQT--FEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKE 820 (1088)
Q Consensus 743 ~s~l~lid~~t--~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~ 820 (1088)
...+..+|+.+ |+.+.....+...+ ++.. + +...+++|-... ......+.+|+...++.+.+....
T Consensus 76 ~~~~~~~d~~~~~W~~~~~~p~~r~~~--~~~~--~---~~~iyv~GG~~~-----~~~~~~~~~~d~~~~~W~~~~~~p 143 (302)
T 2xn4_A 76 VRTVDSYDPVKDQWTSVANMRDRRSTL--GAAV--L---NGLLYAVGGFDG-----STGLSSVEAYNIKSNEWFHVAPMN 143 (302)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSC--EEEE--E---TTEEEEEEEECS-----SCEEEEEEEEETTTTEEEEECCCS
T ss_pred ccceEEECCCCCceeeCCCCCccccce--EEEE--E---CCEEEEEcCCCC-----CccCceEEEEeCCCCeEeecCCCC
Confidence 34577788754 55554322222222 2222 2 246667775321 123457788887777777765433
Q ss_pred ecCceeEeccccCeEEEEEC---------CEEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEE-EEeccc---
Q 001387 821 TKGAVYSLNAFNGKLLAAIN---------QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIV-VGDLMK--- 887 (1088)
Q Consensus 821 ~~g~v~ai~~~~g~Lv~~~g---------~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~-vgD~~~--- 887 (1088)
..-.-.+++.++++|++.-| +.+..|+. .+ ..++. .......-...++.+.++.|+ +|-...
T Consensus 144 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~--~~-~~W~~--~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 218 (302)
T 2xn4_A 144 TRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNA--TT-NEWTY--IAEMSTRRSGAGVGVLNNLLYAVGGHDGPLV 218 (302)
T ss_dssp SCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEET--TT-TEEEE--ECCCSSCCBSCEEEEETTEEEEECCBSSSSB
T ss_pred CcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeC--CC-CcEEE--CCCCccccccccEEEECCEEEEECCCCCCcc
Confidence 32223345556788776544 23445543 21 22222 211111111123334566555 443211
Q ss_pred cEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCceEEEE
Q 001387 888 SISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGA 927 (1088)
Q Consensus 888 Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l~~ 927 (1088)
.-.+..|+.+.++-..++.-+.+|.-.++..+++..++.+
T Consensus 219 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~G 258 (302)
T 2xn4_A 219 RKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVG 258 (302)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred cceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEEC
Confidence 1125668888888888876666665545555544444443
No 208
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=60.22 E-value=1.6e+02 Score=30.42 Aligned_cols=155 Identities=13% Similarity=0.116 Sum_probs=80.3
Q ss_pred cCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCC
Q 001387 715 PRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPE 794 (1088)
Q Consensus 715 p~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~ 794 (1088)
+.-.++++..+.+.++-.. ...|..+|+.+.+. ..+.++ ..+.++. +..+++ ++|++
T Consensus 15 ~Egp~w~~~~~~l~~~d~~---------~~~i~~~d~~~~~~-~~~~~~--~~~~~i~---~~~dG~--l~v~~------ 71 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIP---------AKKVCRWDSFTKQV-QRVTMD--APVSSVA---LRQSGG--YVATI------ 71 (297)
T ss_dssp EEEEEEETTTTEEEEEETT---------TTEEEEEETTTCCE-EEEECS--SCEEEEE---EBTTSS--EEEEE------
T ss_pred ccCCeEECCCCEEEEEECC---------CCEEEEEECCCCcE-EEEeCC--CceEEEE---ECCCCC--EEEEE------
Confidence 4456778866655554332 24678888877654 334433 4455543 344344 56664
Q ss_pred CCCCcceEEEEEEEeCCeEEEEEEEEec---CceeEeccc-cCeEEEEE-C----------CEEEEEEeeeccCcccccc
Q 001387 795 ENEPTKGRILVFIVEDGKLQLIAEKETK---GAVYSLNAF-NGKLLAAI-N----------QKIQLYKWMLRDDGTRELQ 859 (1088)
Q Consensus 795 e~~~~~Gri~v~~i~~~kl~~~~~~~~~---g~v~ai~~~-~g~Lv~~~-g----------~~l~v~~~~~~~~~~~~L~ 859 (1088)
.++|+.|+...++++.+...... ..+..++.- +|+++++. + ..-.+|.++. ++. +.
T Consensus 72 -----~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~--~g~--~~ 142 (297)
T 3g4e_A 72 -----GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP--DHH--VK 142 (297)
T ss_dssp -----TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT--TSC--EE
T ss_pred -----CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC--CCC--EE
Confidence 13688887767788776653221 124444322 67888764 2 2345666642 222 21
Q ss_pred cccccccceEEEEEEEeCCEEEEEeccc-cEEEEEEeccCCeE
Q 001387 860 SECGHHGHILALYVQTRGDFIVVGDLMK-SISLLIYKHEEGAI 901 (1088)
Q Consensus 860 ~~~~~~~~~~~~~l~~~~~~I~vgD~~~-Sv~~~~~~~~~~~l 901 (1088)
........+..+.++..++.+++.|... .|..+.++.+...+
T Consensus 143 ~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~ 185 (297)
T 3g4e_A 143 KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQI 185 (297)
T ss_dssp EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCE
T ss_pred EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcc
Confidence 1111111122233333466888888765 46665555344443
No 209
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=60.12 E-value=2.6e+02 Score=32.81 Aligned_cols=221 Identities=10% Similarity=-0.008 Sum_probs=98.4
Q ss_pred eEEEEeCCeEEEEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECC
Q 001387 684 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD 763 (1088)
Q Consensus 684 ~l~~~~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~ 763 (1088)
.++++..+.++...++....-....++-...|..+.|++..+.+.++-..+ ..|.-++.........+--.
T Consensus 11 ~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~---------~~I~r~~~~g~~~~~~v~~~ 81 (619)
T 3s94_A 11 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSE---------EAIKRTEFNKTESVQNVVVS 81 (619)
T ss_dssp CEEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTT---------TEEEEEEC-----CEEEECS
T ss_pred eEEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCC---------CeEEEEEccCCCceEEEEeC
Confidence 466677777776665532111111223345688888988777665553221 23444444322110011111
Q ss_pred CCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEec--cccCeEEEEE-C
Q 001387 764 TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLN--AFNGKLLAAI-N 840 (1088)
Q Consensus 764 ~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~--~~~g~Lv~~~-g 840 (1088)
.-..+..++ +...+...++.- ...|+|.+++.+....+.+....... +.+|+ +.+|+|+++- |
T Consensus 82 ~~~~P~GlA---vD~~~~~ly~~d----------~~~~~I~v~~~dG~~~~~l~~~~l~~-P~~Iavdp~~g~ly~tD~g 147 (619)
T 3s94_A 82 GLLSPDGLA---CDWLGEKLYWTD----------SETNRIEVSNLDGSLRKVLFWQELDQ-PRAIALDPSSGFMYWTDWG 147 (619)
T ss_dssp SCSCEEEEE---EETTTTEEEEEE----------TTTTEEEEEETTSCSCEEEECSSCSC-CCCEEEETTTTEEEEEECS
T ss_pred CCCCcCeEE---EEecCCEEEEEe----------CCCCEEEEEECCCCCEEEEEeCCCCC-CceEEEecCCCeEEEeccC
Confidence 112333333 222122332221 23567777776544444444333333 33443 4578888876 3
Q ss_pred --CEEEEEEeeeccCcccc--cccccccccceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEec--cCCCceeE
Q 001387 841 --QKIQLYKWMLRDDGTRE--LQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERAR--DYNANWMS 914 (1088)
Q Consensus 841 --~~l~v~~~~~~~~~~~~--L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~--D~~~~~v~ 914 (1088)
.+|....+ +|..+ +.... -..+..+.+...+++|++.|....- +.+++.+......+.. -..|..
T Consensus 148 ~~~~I~r~~~----dG~~~~~l~~~~--~~~P~Glald~~~~~LY~aD~~~~~-I~~~~~dG~~~~~~~~~~~~~P~g-- 218 (619)
T 3s94_A 148 EVPKIERAGM----DGSSRFIIINSE--IYWPNGLTLDYEEQKLYWADAKLNF-IHKSNLDGTNRQAVVKGSLPHPFA-- 218 (619)
T ss_dssp SSCEEEEEET----TSCSCEEEECSS--CSSEEEEEEETTTTEEEEEETTTCC-EEEESSSCCEEC---------CCC--
T ss_pred CCCEEEEEEC----CCCceEEEEeCC--CCCCcEEEEEccCCEEEEEeCCCCe-EEEecCCCCccEEEEeCCCCCceE--
Confidence 45655443 34322 21111 1122344444457899999987653 4455554433322222 122322
Q ss_pred EEEEeeCceEEEEcc-CCcEEEEee
Q 001387 915 AVEILDDDIYLGAEN-NFNLFTVRK 938 (1088)
Q Consensus 915 ~~~~l~~~~~l~~D~-~gnl~~l~~ 938 (1088)
+. ++++.+..+|. .+.+..+..
T Consensus 219 -i~-~~~~~ly~td~~~~~V~~~d~ 241 (619)
T 3s94_A 219 -LT-LFEDILYWTDWSTHSILACNK 241 (619)
T ss_dssp -EE-ESSSEEEEECTTTCSEEEEES
T ss_pred -EE-EeCCEEEEecCCCCEEEEEEC
Confidence 22 24556667775 345555554
No 210
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=59.84 E-value=1.7e+02 Score=30.47 Aligned_cols=161 Identities=10% Similarity=0.035 Sum_probs=80.1
Q ss_pred EEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEec-
Q 001387 744 HFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETK- 822 (1088)
Q Consensus 744 s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~- 822 (1088)
..|..+|+. .+.+..+.... ..+.++. .. ....+.|||. .|.|+.|+.. ++... .....
T Consensus 117 ~~l~~~d~~-g~~~~~~~~~~-~~~~~~~---~~--~~g~l~vgt~----------~~~l~~~d~~-g~~~~--~~~~~~ 176 (330)
T 3hxj_A 117 GHLYAINTD-GTEKWRFKTKK-AIYATPI---VS--EDGTIYVGSN----------DNYLYAINPD-GTEKW--RFKTND 176 (330)
T ss_dssp SEEEEECTT-SCEEEEEECSS-CCCSCCE---EC--TTSCEEEECT----------TSEEEEECTT-SCEEE--EEECSS
T ss_pred CEEEEEcCC-CCEEEEEcCCC-ceeeeeE---Ec--CCCEEEEEcC----------CCEEEEECCC-CCEeE--EEecCC
Confidence 356667776 66665555432 2222221 12 2334667762 3677777654 33322 22232
Q ss_pred CceeEecc-ccCeEEEEECCEEEEEEeeeccCcccccccccccccceEEEEEEEe-CCEEEEEeccccEEEEEEeccCCe
Q 001387 823 GAVYSLNA-FNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTR-GDFIVVGDLMKSISLLIYKHEEGA 900 (1088)
Q Consensus 823 g~v~ai~~-~~g~Lv~~~g~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~-~~~I~vgD~~~Sv~~~~~~~~~~~ 900 (1088)
..+.++.. -+|.|+++. ..|+.++ . ++........ . ...+.++... ++.|++|+...++. .|+++...
T Consensus 177 ~~~~~~~~d~~g~l~v~t-~~l~~~d---~-~g~~~~~~~~--~-~~~~~~~~~~~~g~l~v~t~~~gl~--~~~~~g~~ 246 (330)
T 3hxj_A 177 AITSAASIGKDGTIYFGS-DKVYAIN---P-DGTEKWNFYA--G-YWTVTRPAISEDGTIYVTSLDGHLY--AINPDGTE 246 (330)
T ss_dssp CCCSCCEECTTCCEEEES-SSEEEEC---T-TSCEEEEECC--S-SCCCSCCEECTTSCEEEEETTTEEE--EECTTSCE
T ss_pred CceeeeEEcCCCEEEEEe-CEEEEEC---C-CCcEEEEEcc--C-CcceeceEECCCCeEEEEcCCCeEE--EECCCCCE
Confidence 34445544 267888888 6666544 1 3322221111 0 0112223334 34889998877764 45665555
Q ss_pred EEEEeccCCCceeEEEEEee-CceEEEEccCCcEEEEe
Q 001387 901 IEERARDYNANWMSAVEILD-DDIYLGAENNFNLFTVR 937 (1088)
Q Consensus 901 l~~~~~D~~~~~v~~~~~l~-~~~~l~~D~~gnl~~l~ 937 (1088)
+......... ..+. .++ ++.+.++..+|.|+.+.
T Consensus 247 ~~~~~~~~~~--~~~~-~~~~~g~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 247 KWRFKTGKRI--ESSP-VIGNTDTIYFGSYDGHLYAIN 281 (330)
T ss_dssp EEEEECSSCC--CSCC-EECTTSCEEEECTTCEEEEEC
T ss_pred eEEeeCCCCc--cccc-eEcCCCeEEEecCCCCEEEEC
Confidence 5444322211 1111 234 56677777788888775
No 211
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=59.81 E-value=1.5e+02 Score=30.97 Aligned_cols=104 Identities=16% Similarity=0.358 Sum_probs=54.8
Q ss_pred CCCEEEEEEeecCCCcCcceeEEEEEEeCCC--ceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcc
Q 001387 723 QSRTFAICSLKNQSCAEESEMHFVRLLDDQT--FEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTK 800 (1088)
Q Consensus 723 ~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t--~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~ 800 (1088)
..++|++..... ........+..+|+.+ |+.+.. ++..-.-.++.. . +...+++|-... .....
T Consensus 109 ~~~iyv~GG~~~---~~~~~~~~~~~yd~~~~~W~~~~~--~p~~r~~~~~~~--~---~~~iyv~GG~~~----~~~~~ 174 (318)
T 2woz_A 109 DDKIYVVAGKDL---QTEASLDSVLCYDPVAAKWSEVKN--LPIKVYGHNVIS--H---NGMIYCLGGKTD----DKKCT 174 (318)
T ss_dssp TTEEEEEEEEBT---TTCCEEEEEEEEETTTTEEEEECC--CSSCEESCEEEE--E---TTEEEEECCEES----SSCBC
T ss_pred CCEEEEEcCccC---CCCcccceEEEEeCCCCCEeECCC--CCCcccccEEEE--E---CCEEEEEcCCCC----CCCcc
Confidence 345666654431 1123456788888854 655542 222111112222 2 356677775321 12244
Q ss_pred eEEEEEEEeCCeEEEEEEEEecCceeEeccccCeEEEEEC
Q 001387 801 GRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAIN 840 (1088)
Q Consensus 801 Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~g~Lv~~~g 840 (1088)
..+++|+...++.+.+......-.-.+++.++++|++.-|
T Consensus 175 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 214 (318)
T 2woz_A 175 NRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGG 214 (318)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEE
T ss_pred ceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcC
Confidence 5688898888788777543332233455566888776544
No 212
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=59.37 E-value=2e+02 Score=31.29 Aligned_cols=130 Identities=11% Similarity=0.003 Sum_probs=60.3
Q ss_pred eEEEEEEEeCCeEEEEEEEEecCceeEec--cccCeEEEEEC---CEEEEEEeeeccCcccccccccccccceEEEEEEE
Q 001387 801 GRILVFIVEDGKLQLIAEKETKGAVYSLN--AFNGKLLAAIN---QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQT 875 (1088)
Q Consensus 801 Gri~v~~i~~~kl~~~~~~~~~g~v~ai~--~~~g~Lv~~~g---~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~ 875 (1088)
++|.+++.+....+.+...... .+.+|+ +.+|+|+++-. .+|+.+.. +|..+..-...--..+..+.++.
T Consensus 181 ~~I~~~~~dg~~~~~l~~~~l~-~P~giavdp~~g~ly~td~~~~~~I~r~~~----dG~~~~~~~~~~~~~PnGlavd~ 255 (386)
T 3v65_B 181 SRIEVANLDGAHRKVLLWQSLE-KPRAIALHPMEGTIYWTDWGNTPRIEASSM----DGSGRRIIADTHLFWPNGLTIDY 255 (386)
T ss_dssp TEEEECBTTSCSCEEEECSSCS-CEEEEEEETTTTEEEEEECSSSCEEEEEET----TSCSCEEEECSSCSCEEEEEEEG
T ss_pred CeEEEEeCCCCceEEeecCCCC-CCcEEEEEcCCCeEEEeccCCCCEEEEEeC----CCCCcEEEEECCCCCeeeEEEeC
Confidence 4555554443222333222222 234433 34678877753 34555443 23211110100011123344444
Q ss_pred eCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCceEEEEccCCcEEEEeeC
Q 001387 876 RGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKN 939 (1088)
Q Consensus 876 ~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~ 939 (1088)
.+++|+++|....- +.+++.+......+..... .+..++.+ +++.+..+|..++ .+.+++
T Consensus 256 ~~~~lY~aD~~~~~-I~~~d~dG~~~~~~~~~~~-~~P~giav-~~~~ly~td~~~~-~V~~~~ 315 (386)
T 3v65_B 256 AGRRMYWVDAKHHV-IERANLDGSHRKAVISQGL-PHPFAITV-FEDSLYWTDWHTK-SINSAN 315 (386)
T ss_dssp GGTEEEEEETTTTE-EEEECTTSCSCEEEECSSC-SSEEEEEE-ETTEEEEEETTTT-EEEEEE
T ss_pred CCCEEEEEECCCCE-EEEEeCCCCeeEEEEECCC-CCceEEEE-ECCEEEEeeCCCC-eEEEEE
Confidence 58899999998773 4566655433222222221 22334444 6777778886444 334443
No 213
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=59.10 E-value=1.9e+02 Score=30.94 Aligned_cols=129 Identities=10% Similarity=0.007 Sum_probs=61.2
Q ss_pred ceEEEEEEEeCCeEEEEEEEEecCceeEec--cccCeEEEEEC---CEEEEEEeeeccCcccccccccccccceEEEEEE
Q 001387 800 KGRILVFIVEDGKLQLIAEKETKGAVYSLN--AFNGKLLAAIN---QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQ 874 (1088)
Q Consensus 800 ~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~--~~~g~Lv~~~g---~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~ 874 (1088)
.++|.+++.+....+.+...... .+.+|+ +.+|+|+++-. .+|+.+.. +|..+..-...-...+..+.++
T Consensus 137 ~~~I~~~~~dG~~~~~l~~~~l~-~P~~iavdp~~g~ly~td~~~~~~I~r~~~----dG~~~~~~~~~~~~~PnGla~d 211 (349)
T 3v64_C 137 TSRIEVANLDGAHRKVLLWQSLE-KPRAIALHPMEGTIYWTDWGNTPRIEASSM----DGSGRRIIADTHLFWPNGLTID 211 (349)
T ss_dssp TTEEEEEETTSCSCEEEECTTCS-CEEEEEEETTTTEEEEEECSSSCEEEEEET----TSCSCEESCCSSCSCEEEEEEE
T ss_pred CCeEEEEcCCCCceEEEEeCCCC-CcceEEEecCcCeEEEeccCCCCEEEEEeC----CCCCcEEEEECCCCCcceEEEe
Confidence 35666666553333333222222 234443 34678877753 45555543 2321111010001112334444
Q ss_pred EeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCceEEEEccCCc-EEEE
Q 001387 875 TRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFN-LFTV 936 (1088)
Q Consensus 875 ~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l~~D~~gn-l~~l 936 (1088)
..+++++++|.... .+.+++.+......+.... ..+..++.+ +++.+..+|...+ +..+
T Consensus 212 ~~~~~lY~aD~~~~-~I~~~~~dG~~~~~~~~~~-~~~P~giav-~~~~ly~td~~~~~V~~~ 271 (349)
T 3v64_C 212 YAGRRMYWVDAKHH-VIERANLDGSHRKAVISQG-LPHPFAITV-FEDSLYWTDWHTKSINSA 271 (349)
T ss_dssp TTTTEEEEEETTTT-EEEEEETTSCSCEEEECSS-CSSEEEEEE-ETTEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEECCCC-EEEEEeCCCCceEEEEeCC-CCCceEEEE-ECCEEEEecCCCCeEEEE
Confidence 45789999999876 3456665543322222222 123334444 6777777876443 4433
No 214
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=57.22 E-value=3.3e+02 Score=32.99 Aligned_cols=137 Identities=13% Similarity=0.143 Sum_probs=73.3
Q ss_pred EEEEEeCCCceEEEEEECC----CCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEE-
Q 001387 745 FVRLLDDQTFEFISTYPLD----TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEK- 819 (1088)
Q Consensus 745 ~l~lid~~t~~~i~~~~~~----~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~- 819 (1088)
.|..+|+.+.+. ..+... ++..+.++.. +.+.-+-|||. . .|+.|+...++++.....
T Consensus 428 Gl~~~d~~~~~~-~~~~~~~~~l~~~~v~~i~~-----d~~g~lwigt~----------~-Gl~~~~~~~~~~~~~~~~~ 490 (795)
T 4a2l_A 428 GLSILHRNSGQV-ENFNQRNSQLVNENVYAILP-----DGEGNLWLGTL----------S-ALVRFNPEQRSFTTIEKEK 490 (795)
T ss_dssp EEEEEETTTCCE-EEECTTTSCCSCSCEEEEEE-----CSSSCEEEEES----------S-CEEEEETTTTEEEECCBCT
T ss_pred ceeEEeCCCCcE-EEeecCCCCcCCCeeEEEEE-----CCCCCEEEEec----------C-ceeEEeCCCCeEEEccccc
Confidence 577888876543 233221 2334454432 23445778883 1 266666555555543321
Q ss_pred ---Ee-cCceeEeccc-cCeEEEEECCEEEEEEeeeccCccccccc---ccccccceEEEEEEEe-CCEEEEEeccccEE
Q 001387 820 ---ET-KGAVYSLNAF-NGKLLAAINQKIQLYKWMLRDDGTRELQS---ECGHHGHILALYVQTR-GDFIVVGDLMKSIS 890 (1088)
Q Consensus 820 ---~~-~g~v~ai~~~-~g~Lv~~~g~~l~v~~~~~~~~~~~~L~~---~~~~~~~~~~~~l~~~-~~~I~vgD~~~Sv~ 890 (1088)
.. ...|+++..- +|.|.+|...-|+.++.+ . +..++.. .... ....+.++... ++.|++|+.. |+
T Consensus 491 ~~~~~~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~--~-~~~~~~~~~~~~~l-~~~~i~~i~~d~~g~lWigT~~-Gl- 564 (795)
T 4a2l_A 491 DGTPVVSKQITTLFRDSHKRLWIGGEEGLSVFKQE--G-LDIQKASILPVSNV-TKLFTNCIYEASNGIIWVGTRE-GF- 564 (795)
T ss_dssp TCCBCCCCCEEEEEECTTCCEEEEESSCEEEEEEE--T-TEEEECCCSCSCGG-GGSCEEEEEECTTSCEEEEESS-CE-
T ss_pred cccccCCceEEEEEECCCCCEEEEeCCceEEEeCC--C-CeEEEecCCCCCCC-CCCeeEEEEECCCCCEEEEeCC-Cc-
Confidence 11 3567787655 678999887777776642 1 1111110 0001 11134455443 4578899875 65
Q ss_pred EEEEeccCCeEEEEe
Q 001387 891 LLIYKHEEGAIEERA 905 (1088)
Q Consensus 891 ~~~~~~~~~~l~~~~ 905 (1088)
++|++..+++....
T Consensus 565 -~~~d~~~~~~~~~~ 578 (795)
T 4a2l_A 565 -YCFNEKDKQIKRYN 578 (795)
T ss_dssp -EEEETTTTEEEEEC
T ss_pred -eeECCCCCcEEEeC
Confidence 67888777776654
No 215
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=57.21 E-value=1.7e+02 Score=29.72 Aligned_cols=267 Identities=11% Similarity=0.098 Sum_probs=127.0
Q ss_pred ccceEEEEecCCeEEEeeecCCeEEEEEeeCCCCCCCcEEEEeeeccCCceeeeEEeccCCCCCceEEEEeeCCCCceEE
Q 001387 301 SIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLR 380 (1088)
Q Consensus 301 ~~~s~l~~l~~~~lf~gS~~gds~l~~~~~~~~~~~~~~~~~~~l~n~~Pi~D~~~~~~~~~~~~~l~~~sG~g~~g~L~ 380 (1088)
..|.++..-.++.++++.. ++..++++..+. . +.....-.....+.++++.+ ...+++++. ..|.|.
T Consensus 15 ~~~~~i~~d~~g~l~v~~~-~~~~v~~~d~~~----~-~~~~~~~~~~~~~~~i~~~~-----~g~l~v~~~--~~~~i~ 81 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQH-KANMISCINLDG----K-ITEYPLPTPDAKVMCLTISS-----DGEVWFTEN--AANKIG 81 (299)
T ss_dssp CCEEEEEECTTSCEEEEET-TTTEEEEECTTC----C-EEEEECSSTTCCEEEEEECT-----TSCEEEEET--TTTEEE
T ss_pred CCccceEECCCCCEEEEec-CCCcEEEEcCCC----C-eEEecCCcccCceeeEEECC-----CCCEEEeCC--CCCeEE
Confidence 4677888878888998864 456777776541 2 22221111223455555432 245776643 235666
Q ss_pred EEecCCceeEEEeeeCC-CcceEEEeecCCCCCCccEEEEEecCceEEEEecCCCceeeeeec-------ceecc-ccce
Q 001387 381 IVRNGIGINEQASVELQ-GIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIE-------GFCSQ-TQTL 451 (1088)
Q Consensus 381 ~lr~gi~~~~~~~~~l~-~v~~iw~l~~~~~~~~~~~lilS~~~~T~vl~~~~~~~~~e~~~~-------~f~~~-~~Ti 451 (1088)
.+...=. .....++ .....+.+... . +..++++......++.++.++.+...... ++..+ ..++
T Consensus 82 ~~~~~g~---~~~~~~~~~~~~~~~i~~~---~-~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l 154 (299)
T 2z2n_A 82 RITKKGI---IKEYTLPNPDSAPYGITEG---P-NGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNAL 154 (299)
T ss_dssp EECTTSC---EEEEECSSTTCCEEEEEEC---T-TSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCE
T ss_pred EECCCCc---EEEEeCCCcCCCceeeEEC---C-CCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCCE
Confidence 6654311 1222233 12233444332 1 12345554444455556543333332111 11111 1133
Q ss_pred eeeecCCCeEEEEecCcEEEEecCCcceeeeeeCC-CCCcEEEEEEC-CCEEEEEEC-CCeEEEEEEcCcEEEEEeeccC
Q 001387 452 FCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSP-PGYSVNVATAN-ASQVLLATG-GGHLVYLEIGDGILTEVKHAQL 528 (1088)
Q Consensus 452 ~~~~~~~~~ivQVt~~~i~l~~~~~~~~~~~~~~~-~~~~I~~a~~~-~~~lvv~~~-~~~l~~~~~~~~~l~~~~~~~l 528 (1088)
+++... ...|..++.+ + .+..+..+ ....+...+.+ +..+.++.. ++.+..+.. .+++.......-
T Consensus 155 ~v~~~~--------~~~i~~~~~~-g-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~ 223 (299)
T 2z2n_A 155 WFTENQ--------NNAIGRITES-G-DITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTP 223 (299)
T ss_dssp EEEETT--------TTEEEEECTT-C-CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSST
T ss_pred EEEeCC--------CCEEEEEcCC-C-cEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCC
Confidence 332221 2345555552 1 22223222 22345555554 334555553 455655544 345443321111
Q ss_pred CceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCC-CcCceeEEeeeecCceEEEEEeCCCcEEE
Q 001387 529 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGG-EIIPRSVLLCAFEGISYLLCALGDGHLLN 607 (1088)
Q Consensus 529 ~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~-~~~p~si~~~~~~~~~~L~vgl~~G~l~~ 607 (1088)
...+.++++.+ ...+.++.+.++.|..|+... +. ....++. ...|.++.+ ....|+++..+|.+.+
T Consensus 224 ~~~~~~i~~~~-------~g~l~v~~~~~~~i~~~d~~g-~~-~~~~~~~~~~~~~~i~~----~~g~l~v~~~~~~l~~ 290 (299)
T 2z2n_A 224 NARPHAITAGA-------GIDLWFTEWGANKIGRLTSNN-II-EEYPIQIKSAEPHGICF----DGETIWFAMECDKIGK 290 (299)
T ss_dssp TCCEEEEEECS-------TTCEEEEETTTTEEEEEETTT-EE-EEEECSSSSCCEEEEEE----CSSCEEEEETTTEEEE
T ss_pred CCCceeEEECC-------CCCEEEeccCCceEEEECCCC-ce-EEEeCCCCCCccceEEe----cCCCEEEEecCCcEEE
Confidence 24567777753 224777877678899998742 22 1111221 235777765 2345778877787887
Q ss_pred EEEe
Q 001387 608 FLLN 611 (1088)
Q Consensus 608 y~~~ 611 (1088)
|...
T Consensus 291 ~~~~ 294 (299)
T 2z2n_A 291 LTLI 294 (299)
T ss_dssp EEEC
T ss_pred EEcC
Confidence 7654
No 216
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=56.96 E-value=93 Score=32.62 Aligned_cols=168 Identities=11% Similarity=0.118 Sum_probs=81.1
Q ss_pred EEEEEEeCCC--ceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEe
Q 001387 744 HFVRLLDDQT--FEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKET 821 (1088)
Q Consensus 744 s~l~lid~~t--~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~ 821 (1088)
..+..+|+.+ |+.+.....+... .++.. + +..++++|-....+ ........+++|+...++.+.+.....
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~--~---~~~lyv~GG~~~~~-~~~~~~~~~~~~d~~~~~W~~~~~~p~ 110 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSG--LAGCV--V---GGLLYAVGGRNNSP-DGNTDSSALDCYNPMTNQWSPCAPMSV 110 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBS--CEEEE--E---TTEEEEECCEEEET-TEEEECCCEEEEETTTTEEEECCCCSS
T ss_pred ceEEEEcCCCCeEeECCCCCccccc--ceEEE--E---CCEEEEECCCcCCC-CCCeecceEEEECCCCCeEeECCCCCc
Confidence 4567777754 5444322222222 12222 2 35677777542110 111233567888877777776653322
Q ss_pred cCceeEeccccCeEEEEEC-------CEEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEEE-Eec-----ccc
Q 001387 822 KGAVYSLNAFNGKLLAAIN-------QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVV-GDL-----MKS 888 (1088)
Q Consensus 822 ~g~v~ai~~~~g~Lv~~~g-------~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~v-gD~-----~~S 888 (1088)
.-.-.+++.++++|++.-| +.+..|+. .. .+++. .......-...+..+.++.|++ |-. .+.
T Consensus 111 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~--~~-~~W~~--~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 185 (308)
T 1zgk_A 111 PRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEP--ER-DEWHL--VAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNS 185 (308)
T ss_dssp CCBTCEEEEETTEEEEECCEETTEECCCEEEEET--TT-TEEEE--CCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCC
T ss_pred CccccEEEEECCEEEEEcCCCCCcccccEEEECC--CC-CeEeE--CCCCCccccceEEEEECCEEEEEeCCCCCCcCce
Confidence 2222344556777776644 34555553 21 22222 2111111111223344666654 432 233
Q ss_pred EEEEEEeccCCeEEEEeccCCCceeEEEEEeeCceEEE
Q 001387 889 ISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLG 926 (1088)
Q Consensus 889 v~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l~ 926 (1088)
+..|+...++-..++.-+.+|.-.++..+++..++.
T Consensus 186 --~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 221 (308)
T 1zgk_A 186 --AECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAA 221 (308)
T ss_dssp --EEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEE
T ss_pred --EEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEE
Confidence 456888888888777656666555555554433443
No 217
>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A
Probab=56.10 E-value=9.7 Score=33.12 Aligned_cols=29 Identities=10% Similarity=0.299 Sum_probs=25.3
Q ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Q 001387 1059 SRTRMDEISKTMNVSVEELCKRVEELTRL 1087 (1088)
Q Consensus 1059 ~~~~q~~i~~~~~~~~~~i~~~l~~l~~~ 1087 (1088)
...++++||++.|++++|+.++|.....+
T Consensus 68 ~~SR~~RIA~GSG~~v~eVn~LLkqf~~m 96 (105)
T 1hq1_A 68 KGSRKRRIAAGSGMQVQDVNRLLKQFDDM 96 (105)
T ss_dssp CHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999887653
No 218
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=53.36 E-value=2.6e+02 Score=30.69 Aligned_cols=157 Identities=11% Similarity=-0.003 Sum_probs=76.1
Q ss_pred ccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCC
Q 001387 714 HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLP 793 (1088)
Q Consensus 714 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~ 793 (1088)
.|..++++++.++|++-. . ...|+.+|+.+.+....... .+.+. +.+..++ .+++++..
T Consensus 132 ~P~~la~d~~g~lyv~d~-~---------~~~I~~id~~~g~~~~~~~~--~~~~~----ia~~~~g-~~l~~~d~---- 190 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQR-D---------DPRVRLISVDDNKVTTVHPG--FKGGK----PAVTKDK-QRVYSIGW---- 190 (409)
T ss_dssp CEEEEEECSTTEEEEEET-T---------TTEEEEEETTTTEEEEEEET--CCBCB----CEECTTS-SEEEEEBS----
T ss_pred CceEEEEeCCCCEEEEec-C---------CCcEEEEECCCCEEEEeecc--CCCCc----eeEecCC-CcEEEEec----
Confidence 477888888777555432 1 24788999877665433322 22222 2233333 34444431
Q ss_pred CCCCCcceEEEEEEEeCC-eEEEEEEEE--ecCceeEec--cccCeEEEEECC-EEEEEEeeeccCcccccc----cccc
Q 001387 794 EENEPTKGRILVFIVEDG-KLQLIAEKE--TKGAVYSLN--AFNGKLLAAINQ-KIQLYKWMLRDDGTRELQ----SECG 863 (1088)
Q Consensus 794 ~e~~~~~Gri~v~~i~~~-kl~~~~~~~--~~g~v~ai~--~~~g~Lv~~~g~-~l~v~~~~~~~~~~~~L~----~~~~ 863 (1088)
...++|+.|+.... ..+.+.... ....+.+++ +-+|+|+++..+ +|+.++. . .+...+. ....
T Consensus 191 ----~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~--~-~~~~~~~~~~~~~g~ 263 (409)
T 3hrp_A 191 ----EGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNV--K-TQEVTLIKQLELSGS 263 (409)
T ss_dssp ----STTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEET--T-TCCEEEEEECCCCSC
T ss_pred ----CCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEEC--C-CCCEEEEecccccCC
Confidence 11227777766532 233332211 122334333 336788886653 4555443 2 2222222 0000
Q ss_pred cccceE-EEEEEEeCCEEEEEeccccEEEEEEeccCC
Q 001387 864 HHGHIL-ALYVQTRGDFIVVGDLMKSISLLIYKHEEG 899 (1088)
Q Consensus 864 ~~~~~~-~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~ 899 (1088)
....+. .+.+...++.++++|...+- +.+|+.+..
T Consensus 264 ~~~~P~~~ia~~p~~g~lyv~d~~~~~-I~~~~~~g~ 299 (409)
T 3hrp_A 264 LGTNPGPYLIYYFVDSNFYMSDQNLSS-VYKITPDGE 299 (409)
T ss_dssp CCCSSCCEEEEETTTTEEEEEETTTTE-EEEECTTCC
T ss_pred CCCCccccEEEeCCCCEEEEEeCCCCE-EEEEecCCC
Confidence 000111 33333336799999988774 567776554
No 219
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=53.13 E-value=1.3e+02 Score=31.51 Aligned_cols=136 Identities=15% Similarity=0.036 Sum_probs=68.0
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccccCeEEEEEC-------CEEEEEEeeeccC
Q 001387 781 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAIN-------QKIQLYKWMLRDD 853 (1088)
Q Consensus 781 ~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~g~Lv~~~g-------~~l~v~~~~~~~~ 853 (1088)
...+++|-... ......++.|+...++.+.+......-.-.+.+.++++|++.-| +.+..|+. . .
T Consensus 122 ~~iyv~GG~~~-----~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~--~-~ 193 (308)
T 1zgk_A 122 GHIYAVGGSHG-----CIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYP--E-R 193 (308)
T ss_dssp TEEEEECCEET-----TEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEET--T-T
T ss_pred CEEEEEcCCCC-----CcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeC--C-C
Confidence 46677765321 11234677888777777766533222222344455777776544 34555553 2 1
Q ss_pred cccccccccccccceEEEEEEEeCCEEEE-Eeccc---cEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCceEEE
Q 001387 854 GTRELQSECGHHGHILALYVQTRGDFIVV-GDLMK---SISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLG 926 (1088)
Q Consensus 854 ~~~~L~~~~~~~~~~~~~~l~~~~~~I~v-gD~~~---Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l~ 926 (1088)
.+++. .......-...++.+.++.|++ |-... .-.+..|+.+.++-..+..-+.+|.-.++..+++..++.
T Consensus 194 ~~W~~--~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~ 268 (308)
T 1zgk_A 194 NEWRM--ITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVL 268 (308)
T ss_dssp TEEEE--CCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEE
T ss_pred CeEee--CCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEECCEEEEE
Confidence 22222 2111111111223345666554 43211 122466888888888887666666655555554444443
No 220
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=52.14 E-value=2.9e+02 Score=30.91 Aligned_cols=171 Identities=11% Similarity=0.061 Sum_probs=91.3
Q ss_pred EEEEEeCCCccCe----EEEecCCCEEEEEEeec----C--CCcCc---ceeEEEEEEeCCCceEEEEEECCCC-ceEeE
Q 001387 705 HIRSIPLGEHPRR----ICHQEQSRTFAICSLKN----Q--SCAEE---SEMHFVRLLDDQTFEFISTYPLDTF-EYGCS 770 (1088)
Q Consensus 705 ~~~~i~l~~tp~~----i~y~~~~~~~~v~~~~~----~--~~~~~---~~~s~l~lid~~t~~~i~~~~~~~~-E~v~s 770 (1088)
.+++++.+..|.. +-|+|..+.+++..--. + ...++ .....|.++|..+++.+.++.+... ..+.-
T Consensus 176 v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~ 255 (462)
T 2ece_A 176 PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALE 255 (462)
T ss_dssp EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEE
T ss_pred EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccce
Confidence 4556666655543 45589989665553110 0 01111 3467899999999999999998632 22322
Q ss_pred EEEEEE--cCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEe-----c--------------CceeEec
Q 001387 771 ILSCSF--SDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKET-----K--------------GAVYSLN 829 (1088)
Q Consensus 771 i~~~~~--~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~-----~--------------g~v~ai~ 829 (1088)
+.| ..+ ..+..|++.... ..-.+.|.+|..++++++.+...++ . +.+.+|.
T Consensus 256 ---i~f~~~Pd-g~~aYV~~e~~~----~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~ 327 (462)
T 2ece_A 256 ---LRPLHDPT-KLMGFINMVVSL----KDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID 327 (462)
T ss_dssp ---EEECSSTT-CCEEEEEEEEET----TTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred ---eEeeECCC-CCEEEEEEeeec----cCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence 334 333 445555554221 1245788888888776655443221 1 2233333
Q ss_pred cc-cC-eEEEEEC--CEEEEEEeeeccCcccccccccccc---------------cceEEEEEEEeCCEEEEEec
Q 001387 830 AF-NG-KLLAAIN--QKIQLYKWMLRDDGTRELQSECGHH---------------GHILALYVQTRGDFIVVGDL 885 (1088)
Q Consensus 830 ~~-~g-~Lv~~~g--~~l~v~~~~~~~~~~~~L~~~~~~~---------------~~~~~~~l~~~~~~I~vgD~ 885 (1088)
-- +| +|+++.- +.|.+|+++ +.+..+++.....- ..+.-+.++-.|.+++|+..
T Consensus 328 lS~DGrfLYVSnrg~d~VavfdV~--d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaNs 400 (462)
T 2ece_A 328 ISLDDKFLYLSLWGIGEVRQYDIS--NPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTNS 400 (462)
T ss_dssp ECTTSCEEEEEETTTTEEEEEECS--STTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEECC
T ss_pred ECCCCCEEEEEeCCCCEEEEEEec--CCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEcC
Confidence 22 44 4666543 688998874 22333443321111 01222444556789999884
No 221
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=50.01 E-value=2.8e+02 Score=30.01 Aligned_cols=108 Identities=15% Similarity=0.065 Sum_probs=61.1
Q ss_pred EEEEECCCeEEEEEEcCcEEEEEee-ccC---CceeEEEEeCCCCC--CCCCccEEEEEEecCCEEEEEECCCCCceE-E
Q 001387 501 VLLATGGGHLVYLEIGDGILTEVKH-AQL---EYEISCLDINPIGE--NPSYSQIAAVGMWTDISVRIFSLPDLNLIT-K 573 (1088)
Q Consensus 501 lvv~~~~~~l~~~~~~~~~l~~~~~-~~l---~~~is~l~~~~~~~--~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~-~ 573 (1088)
++-+..++.+.+...+.++...... ..+ ...|.++++.|... ....+.+++-|.+ |++++||++.+-..+. .
T Consensus 104 las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~-D~tv~~Wd~~~~~~~~~~ 182 (393)
T 4gq1_A 104 LACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD-DCTLIIWRLTDEGPILAG 182 (393)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET-TSEEEEEEEETTEEEEEE
T ss_pred EEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC-CCeEEEEECCCCceeeee
Confidence 3334456667666666544332211 122 46789998865321 0112456666666 9999999986533322 2
Q ss_pred ecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEec
Q 001387 574 EHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNM 612 (1088)
Q Consensus 574 ~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~ 612 (1088)
.... ..+.++.+.+ .+..+|..|..||.+..|.+..
T Consensus 183 ~~~~--~~v~~v~~~p-~~~~~l~~~~~d~~v~~wd~~t 218 (393)
T 4gq1_A 183 YPLS--SPGISVQFRP-SNPNQLIVGERNGNIRIFDWTL 218 (393)
T ss_dssp EECS--SCEEEEEEET-TEEEEEEEEETTSEEEEEETTC
T ss_pred cCCC--CCcEEEEECC-CCCceEEecCCCCEEEEEECCC
Confidence 2222 2344554442 1235688899999999987643
No 222
>2jqe_A SRP54, signal recognition 54 kDa protein; AF54, structure, solution, signaling protein; NMR {Archaeoglobus fulgidus}
Probab=49.69 E-value=13 Score=33.05 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=25.4
Q ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Q 001387 1059 SRTRMDEISKTMNVSVEELCKRVEELTRL 1087 (1088)
Q Consensus 1059 ~~~~q~~i~~~~~~~~~~i~~~l~~l~~~ 1087 (1088)
...++++||++.|++++|+.++|.+...+
T Consensus 77 ~~SR~~RIA~GSG~~v~eVn~LLkqf~~m 105 (119)
T 2jqe_A 77 DSSRIRRIAIGSGTSPQEVKELLNYYKTM 105 (119)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 47899999999999999999999887653
No 223
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=47.64 E-value=2.5e+02 Score=28.79 Aligned_cols=108 Identities=9% Similarity=-0.008 Sum_probs=52.6
Q ss_pred ccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECC----CCceEeEEEEEEEcCCCceEEEEEee
Q 001387 714 HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD----TFEYGCSILSCSFSDDSNVYYCVGTA 789 (1088)
Q Consensus 714 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~----~~E~v~si~~~~~~~~~~~~i~VGT~ 789 (1088)
.|..++++++.+.|+.. ... ...+.....|..+|+.+.+.. .+..+ ....+.++ .+..++ ..+.|++.
T Consensus 19 ~~~~~~~~~~g~l~~~~-~~~--~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i---~~~~~~-g~l~v~~~ 90 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVA-PEV--EVNGKPAGEILRIDLKTGKKT-VICKPEVNGYGGIPAGC---QCDRDA-NQLFVADM 90 (314)
T ss_dssp TCEEEEECTTSCEEEEE-TTC--EETTEECCEEEEECTTTCCEE-EEECCEETTEECCEEEE---EECSSS-SEEEEEET
T ss_pred CccCceECCCCCEEEEE-ecc--ccCCCCCCEEEEEeCCCCcEE-EEEecccCCCCCCCceE---EEecCC-CcEEEEEC
Confidence 57888888777776651 000 000112356888887666543 22221 11233333 233321 33445542
Q ss_pred eeCCCCCCCcceEEEEEEEeCCeEEEE-EEEE--e-cCceeEeccc-cCeEEEEEC
Q 001387 790 YVLPEENEPTKGRILVFIVEDGKLQLI-AEKE--T-KGAVYSLNAF-NGKLLAAIN 840 (1088)
Q Consensus 790 ~~~~~e~~~~~Gri~v~~i~~~kl~~~-~~~~--~-~g~v~ai~~~-~g~Lv~~~g 840 (1088)
.++|+.|+.. ++++.+ .... . ...+.+++.- +|+|+++..
T Consensus 91 ----------~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~ 135 (314)
T 1pjx_A 91 ----------RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAP 135 (314)
T ss_dssp ----------TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEEC
T ss_pred ----------CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEec
Confidence 1267777765 555543 2111 0 1235566543 577887764
No 224
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=47.14 E-value=2.7e+02 Score=29.15 Aligned_cols=187 Identities=11% Similarity=-0.042 Sum_probs=90.8
Q ss_pred EEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEE
Q 001387 707 RSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCV 786 (1088)
Q Consensus 707 ~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~V 786 (1088)
+.+.++..|..+++.++.+.++ ++ . ..|..+|+.+.+...-...+.......+..+.+..+++ +.+
T Consensus 84 ~~~~~~~~v~~i~~~~dg~l~v-~~-~----------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~v 149 (326)
T 2ghs_A 84 TVHALPFMGSALAKISDSKQLI-AS-D----------DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA--LWI 149 (326)
T ss_dssp EEEECSSCEEEEEEEETTEEEE-EE-T----------TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC--EEE
T ss_pred EEEECCCcceEEEEeCCCeEEE-EE-C----------CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCC--EEE
Confidence 3455567788888888766544 33 1 13788888776643222332211111222333444333 456
Q ss_pred EeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cC-eEEEEE--CCEEEEEEeeeccCccccccc--
Q 001387 787 GTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NG-KLLAAI--NQKIQLYKWMLRDDGTRELQS-- 860 (1088)
Q Consensus 787 GT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g-~Lv~~~--g~~l~v~~~~~~~~~~~~L~~-- 860 (1088)
|+.... .....|+|+.++ +++++.+... .+.+..++-- +| .|+++. ++.|++|+++. +.| .++..
T Consensus 150 ~~~~~~---~~~~~~~l~~~~--~g~~~~~~~~--~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~-~~G-l~~~~~~ 220 (326)
T 2ghs_A 150 GTMGRK---AETGAGSIYHVA--KGKVTKLFAD--ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDA-RTG-LPTGKAE 220 (326)
T ss_dssp EEEETT---CCTTCEEEEEEE--TTEEEEEEEE--ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCT-TTC-CBSSCCE
T ss_pred EeCCCc---CCCCceEEEEEe--CCcEEEeeCC--CcccCCeEEcCCCCEEEEEECCCCEEEEEEccc-ccC-CcccCce
Confidence 664321 124568888888 5676654321 1234444432 34 566664 35788777531 122 01111
Q ss_pred -ccccc-cceEEEEEEEe-CCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEe
Q 001387 861 -ECGHH-GHILALYVQTR-GDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEIL 919 (1088)
Q Consensus 861 -~~~~~-~~~~~~~l~~~-~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l 919 (1088)
...+. ....+-.+... +..+++++...+ .+.+|+++...+..+. - ....++++.|-
T Consensus 221 ~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~-~v~~~d~~g~~~~~i~-~-~~~~~~~~af~ 279 (326)
T 2ghs_A 221 VFIDSTGIKGGMDGSVCDAEGHIWNARWGEG-AVDRYDTDGNHIARYE-V-PGKQTTCPAFI 279 (326)
T ss_dssp EEEECTTSSSEEEEEEECTTSCEEEEEETTT-EEEEECTTCCEEEEEE-C-SCSBEEEEEEE
T ss_pred EEEECCCCCCCCCeeEECCCCCEEEEEeCCC-EEEEECCCCCEEEEEE-C-CCCCcEEEEEe
Confidence 01111 11223344443 235777776533 2466777544444443 1 22356666664
No 225
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=46.61 E-value=1.3e+02 Score=32.74 Aligned_cols=69 Identities=14% Similarity=0.023 Sum_probs=51.7
Q ss_pred EEEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECC
Q 001387 694 TIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD 763 (1088)
Q Consensus 694 ~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~ 763 (1088)
.+.-++....-.+.+|++|..| .++++|+.+.+.|+....+-....+....|.++|+.|++++.++++.
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~ 115 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELP 115 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEET
T ss_pred eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECC
Confidence 5556776666778999999999 89999999988887642100001113478999999999999999875
No 226
>1qb2_A SRP54, human signal recognition particle 54 KD protein; alpha-helix, helix-turn-helix, signaling protein; 2.10A {Homo sapiens} SCOP: a.36.1.1 PDB: 1ry1_W* 2go5_W
Probab=46.42 E-value=14 Score=32.32 Aligned_cols=28 Identities=14% Similarity=0.347 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhcc
Q 001387 1060 RTRMDEISKTMNVSVEELCKRVEELTRL 1087 (1088)
Q Consensus 1060 ~~~q~~i~~~~~~~~~~i~~~l~~l~~~ 1087 (1088)
..++++||++.|++++|+.++|.....+
T Consensus 75 ~SR~~RIA~GSG~~v~eVn~LLkqf~~m 102 (109)
T 1qb2_A 75 PGRIQRVARGSGVSTRDVQELLTQYTKF 102 (109)
T ss_dssp THHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999887654
No 227
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=45.95 E-value=5.4e+02 Score=32.22 Aligned_cols=232 Identities=13% Similarity=0.010 Sum_probs=0.0
Q ss_pred CCeEEEEeCCeEEEEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEee---cCCCcCcceeEEEEEEeCCCceEEE
Q 001387 682 PDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLK---NQSCAEESEMHFVRLLDDQTFEFIS 758 (1088)
Q Consensus 682 ~~~l~~~~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~---~~~~~~~~~~s~l~lid~~t~~~i~ 758 (1088)
++.++++..+.+.+..++... ..+-..-......++++|+.+.++.++.+ . ....|.++|..+.+
T Consensus 24 ~~~iaf~~~~~l~~~~~~gg~--~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~-------~~~~i~~~d~~~g~--- 91 (1045)
T 1k32_A 24 GDRIIFVCCDDLWEHDLKSGS--TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSL-------NTADLYFYNGENGE--- 91 (1045)
T ss_dssp TTEEEEEETTEEEEEETTTCC--EEEEECSSSEEEEEEECTTSSEEEEEEEESTTC-------CEEEEEEEETTTTE---
T ss_pred CCEEEEEECCcEEEEECCCCc--EEEeeeCCCcccCeEECCCCCEEEEEEeeccCC-------CCCeEEEEECCCCC---
Q ss_pred EEECCCCceEe-----EEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEE--------------
Q 001387 759 TYPLDTFEYGC-----SILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEK-------------- 819 (1088)
Q Consensus 759 ~~~~~~~E~v~-----si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~-------------- 819 (1088)
...+..+.... ++..+.+..+++ +++.+.. +.......+|+.+++..++.+.+...
T Consensus 92 ~~~lt~~~~~~~~~~~~~~~~~~SpDg~-ll~~~~~----~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~ 166 (1045)
T 1k32_A 92 IKRITYFSGKSTGRRMFTDVAGFDPDGN-LIISTDA----MQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVI 166 (1045)
T ss_dssp EEECCCCCEEEETTEECSEEEEECTTCC-EEEEECT----TSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEE
T ss_pred eEEcccCCCcccccccccccccCCCCCE-EEEEECC----cCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEE
Q ss_pred ----------------------------------EecCceeEeccccCeEEEEEC--CEEEEEEeeeccCcccccccccc
Q 001387 820 ----------------------------------ETKGAVYSLNAFNGKLLAAIN--QKIQLYKWMLRDDGTRELQSECG 863 (1088)
Q Consensus 820 ----------------------------------~~~g~v~ai~~~~g~Lv~~~g--~~l~v~~~~~~~~~~~~L~~~~~ 863 (1088)
.+.+.+.++.--.+++++..+ ....+|.++......+.+....
T Consensus 167 ~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~- 245 (1045)
T 1k32_A 167 GRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT- 245 (1045)
T ss_dssp EESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC-
T ss_pred eccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCC-
Q ss_pred cccceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccC---------CCceeEEEEEe-eCceEEEEccCCcE
Q 001387 864 HHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDY---------NANWMSAVEIL-DDDIYLGAENNFNL 933 (1088)
Q Consensus 864 ~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~---------~~~~v~~~~~l-~~~~~l~~D~~gnl 933 (1088)
......++..|.+|+.+ ..-.++.|+.+..++..+..+. ....+.++.+- .++..++.-..+++
T Consensus 246 ---~~~~~~~SpDG~~la~~---~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i 319 (1045)
T 1k32_A 246 ---DYYPRHLNTDGRRILFS---KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQA 319 (1045)
T ss_dssp ---SSCEEEEEESSSCEEEE---ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEE
T ss_pred ---CcceeeEcCCCCEEEEE---eCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEE
Q ss_pred EEEe
Q 001387 934 FTVR 937 (1088)
Q Consensus 934 ~~l~ 937 (1088)
+++.
T Consensus 320 ~~~~ 323 (1045)
T 1k32_A 320 FIQD 323 (1045)
T ss_dssp EEEC
T ss_pred EEEc
No 228
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=44.28 E-value=4.5e+02 Score=30.82 Aligned_cols=219 Identities=11% Similarity=0.027 Sum_probs=106.9
Q ss_pred eEEEEeCCeEEEEEEcCCCCeEEEEEeCCC--ccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEE
Q 001387 684 SLAIAKEGELTIGTIDDIQKLHIRSIPLGE--HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYP 761 (1088)
Q Consensus 684 ~l~~~~~~~l~i~~l~~~~~~~~~~i~l~~--tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~ 761 (1088)
.|+++..+.++...++... ....+|+.. .|..|.|++..+.+.++-... ..|.-++.........+.
T Consensus 8 ~Ll~s~~~~I~~i~l~~~~--~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~---------~~I~r~~~~g~~~~~v~~ 76 (628)
T 4a0p_A 8 FLLFSRRADIRRISLETNN--NNVAIPLTGVKEASALDFDVTDNRIYWTDISL---------KTISRAFMNGSALEHVVE 76 (628)
T ss_dssp EEEEEETTEEEEEESSCTT--CEEECCCCSCSCEEEEEEETTTTEEEEEETTT---------TEEEEEETTSCSCEEEEC
T ss_pred EEEEEeCCcEEEEECCCCC--cceEEEcCCCCceEEEEEECCCCEEEEEECCC---------CeEEEEECCCCCcEEEEe
Confidence 5667778888777776432 234566654 688899998777665553321 344445543211111111
Q ss_pred CCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEec--cccCeEEEEE
Q 001387 762 LDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLN--AFNGKLLAAI 839 (1088)
Q Consensus 762 ~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~--~~~g~Lv~~~ 839 (1088)
..-..+..++. .-.+...++.- ...++|.+++.+....+.+....... +.+|+ +-+|+|+++-
T Consensus 77 -~g~~~P~GlAv---D~~~~~LY~tD----------~~~~~I~v~~~dG~~~~~l~~~~l~~-P~~iavdp~~G~lY~tD 141 (628)
T 4a0p_A 77 -FGLDYPEGMAV---DWLGKNLYWAD----------TGTNRIEVSKLDGQHRQVLVWKDLDS-PRALALDPAEGFMYWTE 141 (628)
T ss_dssp -SSCSCCCEEEE---ETTTTEEEEEE----------TTTTEEEEEETTSTTCEEEECSSCCC-EEEEEEETTTTEEEEEE
T ss_pred -CCCCCcceEEE---EeCCCEEEEEE----------CCCCEEEEEecCCCcEEEEEeCCCCC-cccEEEccCCCeEEEeC
Confidence 01122333321 11122222211 13467777776543334443333333 34444 3478888887
Q ss_pred -C--CEEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEE
Q 001387 840 -N--QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAV 916 (1088)
Q Consensus 840 -g--~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~ 916 (1088)
| .+|+...+ +|.... ....--..+..+.++..+++++++|..... +.+++.+......++.... ...++
T Consensus 142 ~g~~~~I~r~~~----dG~~~~-~l~~~~~~P~GlalD~~~~~LY~aD~~~~~-I~~~d~dG~~~~v~~~~l~--~P~gl 213 (628)
T 4a0p_A 142 WGGKPKIDRAAM----DGSERT-TLVPNVGRANGLTIDYAKRRLYWTDLDTNL-IESSNMLGLNREVIADDLP--HPFGL 213 (628)
T ss_dssp CSSSCEEEEEET----TSCSCE-EEECSCSSEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSCEEEEECCS--CEEEE
T ss_pred CCCCCEEEEEeC----CCCceE-EEECCCCCcceEEEccccCEEEEEECCCCE-EEEEcCCCCceEEeeccCC--CceEE
Confidence 3 56655543 232211 111111122344455557899999998763 3456654433344443322 12233
Q ss_pred EEeeCceEEEEcc-CCcEEEEe
Q 001387 917 EILDDDIYLGAEN-NFNLFTVR 937 (1088)
Q Consensus 917 ~~l~~~~~l~~D~-~gnl~~l~ 937 (1088)
.+ +++.+..+|. .+.+..+.
T Consensus 214 av-~~~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 214 TQ-YQDYIYWTDWSRRSIERAN 234 (628)
T ss_dssp EE-ETTEEEEEETTTTEEEEEE
T ss_pred EE-ECCEEEEecCCCCEEEEEE
Confidence 32 4567777776 44444444
No 229
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=43.20 E-value=17 Score=32.79 Aligned_cols=29 Identities=14% Similarity=0.337 Sum_probs=25.3
Q ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Q 001387 1059 SRTRMDEISKTMNVSVEELCKRVEELTRL 1087 (1088)
Q Consensus 1059 ~~~~q~~i~~~~~~~~~~i~~~l~~l~~~ 1087 (1088)
+..++++||++.|++++|+.++|.+...+
T Consensus 87 ~~SRk~RIA~GSG~~v~eVn~LLkqf~qm 115 (129)
T 1mfq_C 87 QPGRIQRVARGSGVSTRDVQELLTQYTKF 115 (129)
T ss_dssp CTHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999887653
No 230
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=42.57 E-value=1.8e+02 Score=30.91 Aligned_cols=89 Identities=11% Similarity=0.007 Sum_probs=44.5
Q ss_pred EEEEEeC----CCceEEEEEE-CCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEE
Q 001387 745 FVRLLDD----QTFEFISTYP-LDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEK 819 (1088)
Q Consensus 745 ~l~lid~----~t~~~i~~~~-~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~ 819 (1088)
.+..+|+ .+|+.+.... .+...+ ++.. + +..++++|-....+.........+++|+...++.+.+...
T Consensus 32 ~~~~~d~~~~~~~W~~~~~~p~~~R~~~--~~~~--~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 104 (357)
T 2uvk_A 32 AWYKLDTQAKDKKWTALAAFPGGPRDQA--TSAF--I---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSH 104 (357)
T ss_dssp CEEEEETTSSSCCEEECCCCTTCCCBSC--EEEE--E---TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCC
T ss_pred eEEEEccccCCCCeeECCCCCCCcCccc--eEEE--E---CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCC
Confidence 3566776 4577665433 111222 2222 2 2467777754221111122345688888877777766543
Q ss_pred E-ecCceeEeccccCeEEEEEC
Q 001387 820 E-TKGAVYSLNAFNGKLLAAIN 840 (1088)
Q Consensus 820 ~-~~g~v~ai~~~~g~Lv~~~g 840 (1088)
. ..-.-.+++.++++|++.-|
T Consensus 105 ~p~~r~~~~~~~~~~~iyv~GG 126 (357)
T 2uvk_A 105 APMGMAGHVTFVHNGKAYVTGG 126 (357)
T ss_dssp CSSCCSSEEEEEETTEEEEEEC
T ss_pred CCcccccceEEEECCEEEEEeC
Confidence 3 11111223447888877666
No 231
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=42.36 E-value=4.6e+02 Score=30.37 Aligned_cols=86 Identities=12% Similarity=0.047 Sum_probs=51.7
Q ss_pred EEEecCCCEEEEEEeecCC--------Cc------CcceeEEEEEEeCCCceEEEEEECCCCce-----EeEEEEEEEc-
Q 001387 718 ICHQEQSRTFAICSLKNQS--------CA------EESEMHFVRLLDDQTFEFISTYPLDTFEY-----GCSILSCSFS- 777 (1088)
Q Consensus 718 i~y~~~~~~~~v~~~~~~~--------~~------~~~~~s~l~lid~~t~~~i~~~~~~~~E~-----v~si~~~~~~- 777 (1088)
.+|+|+.+++.+.+....+ .+ +.....+|.-+|+.|++.+-++++.+++. +.+.......
T Consensus 251 ~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~ 330 (582)
T 1flg_A 251 ASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKA 330 (582)
T ss_dssp CEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEEC
T ss_pred ceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeec
Confidence 5677777777776643210 11 22344688999999999999998876532 1222222221
Q ss_pred CCCc--eEEEEEeeeeCCCCCCCcceEEEEEEEeCCeE
Q 001387 778 DDSN--VYYCVGTAYVLPEENEPTKGRILVFIVEDGKL 813 (1088)
Q Consensus 778 ~~~~--~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl 813 (1088)
.+++ .++++|+ ..|.+|+++...+++
T Consensus 331 ~~G~~~~~v~~~~----------~~G~l~~lD~~tG~~ 358 (582)
T 1flg_A 331 KDGKIVKATAHAD----------RNGFFYVVDRSNGKL 358 (582)
T ss_dssp SSSCEEEEEEEEC----------TTSEEEEEETTTCCE
T ss_pred CCCCEEEEEEEEC----------CCceEEEEECCCCCE
Confidence 1232 4566664 568999998776654
No 232
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=42.01 E-value=2.8e+02 Score=27.83 Aligned_cols=159 Identities=11% Similarity=0.051 Sum_probs=78.7
Q ss_pred CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeC
Q 001387 713 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVL 792 (1088)
Q Consensus 713 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~ 792 (1088)
..|+.+++++..+.+.++... ...|..++...... ..+.-.....+..++ +..++..+++....
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~---------~~~I~~~~~~g~~~-~~~~~~~~~~P~~i~---vd~~~g~lyv~~~~--- 142 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQ---------LDRIEVAKMDGTQR-RVLFDTGLVNPRGIV---TDPVRGNLYWTDWN--- 142 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETT---------TTEEEEEETTSCSC-EEEECSSCSSEEEEE---EETTTTEEEEEECC---
T ss_pred CCccEEEEEecCCeEEEEECC---------CCEEEEEEcCCCCE-EEEEECCCCCccEEE---EeeCCCEEEEEECC---
Confidence 579999999876655555332 13566666643211 111101113344332 33322333332210
Q ss_pred CCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEec--cccCeEEEEEC--CEEEEEEeeeccCcccccccccccccce
Q 001387 793 PEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLN--AFNGKLLAAIN--QKIQLYKWMLRDDGTRELQSECGHHGHI 868 (1088)
Q Consensus 793 ~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~--~~~g~Lv~~~g--~~l~v~~~~~~~~~~~~L~~~~~~~~~~ 868 (1088)
...++|+.+.++....+.+..... +.+..++ .-+++|+++.. ++|.+++++ +.. ..... ....
T Consensus 143 -----~~~~~I~~~~~dg~~~~~~~~~~~-~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~----g~~-~~~~~--~~~~ 209 (267)
T 1npe_A 143 -----RDNPKIETSHMDGTNRRILAQDNL-GLPNGLTFDAFSSQLCWVDAGTHRAECLNPA----QPG-RRKVL--EGLQ 209 (267)
T ss_dssp -----SSSCEEEEEETTSCCCEEEECTTC-SCEEEEEEETTTTEEEEEETTTTEEEEEETT----EEE-EEEEE--ECCC
T ss_pred -----CCCcEEEEEecCCCCcEEEEECCC-CCCcEEEEcCCCCEEEEEECCCCEEEEEecC----CCc-eEEEe--cCCC
Confidence 124688877765433333322222 2344444 23567877764 567776642 211 11111 1122
Q ss_pred EEEEEEEeCCEEEEEeccccEEEEEEeccCCeE
Q 001387 869 LALYVQTRGDFIVVGDLMKSISLLIYKHEEGAI 901 (1088)
Q Consensus 869 ~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l 901 (1088)
.|..+...++.++++|...+- +.+++.+.++.
T Consensus 210 ~P~gi~~d~~~lyva~~~~~~-v~~~d~~~g~~ 241 (267)
T 1npe_A 210 YPFAVTSYGKNLYYTDWKTNS-VIAMDLAISKE 241 (267)
T ss_dssp SEEEEEEETTEEEEEETTTTE-EEEEETTTTEE
T ss_pred CceEEEEeCCEEEEEECCCCe-EEEEeCCCCCc
Confidence 345566678999999987553 46677765543
No 233
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=41.99 E-value=3.1e+02 Score=28.26 Aligned_cols=97 Identities=10% Similarity=0.033 Sum_probs=46.2
Q ss_pred cCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCC
Q 001387 715 PRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPE 794 (1088)
Q Consensus 715 p~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~ 794 (1088)
+.-.+++++.+.+++..... ..|..+++ +.+ +..+... ...+.++ .+..+++ ++|++.
T Consensus 47 ~egp~~~~~g~~l~~~d~~~---------~~i~~~~~-~g~-~~~~~~~-~~~~~gl---~~d~dG~--l~v~~~----- 104 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVG---------RRVLGWRE-DGT-VDVLLDA-TAFTNGN---AVDAQQR--LVHCEH----- 104 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTT---------TEEEEEET-TSC-EEEEEES-CSCEEEE---EECTTSC--EEEEET-----
T ss_pred ccCCeEeCCCCEEEEEECCC---------CEEEEEeC-CCC-EEEEeCC-CCcccee---eECCCCC--EEEEEC-----
Confidence 45677888887554443322 35666677 333 2233322 2333333 2343333 445542
Q ss_pred CCCCcceEEEEEEEeCCeEEEEEEEEec---CceeEeccc-cCeEEEE
Q 001387 795 ENEPTKGRILVFIVEDGKLQLIAEKETK---GAVYSLNAF-NGKLLAA 838 (1088)
Q Consensus 795 e~~~~~Gri~v~~i~~~kl~~~~~~~~~---g~v~ai~~~-~g~Lv~~ 838 (1088)
..++|+.|+.. ++++.+...... ..+..++.- +|.|+++
T Consensus 105 ----~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~t 147 (305)
T 3dr2_A 105 ----GRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFT 147 (305)
T ss_dssp ----TTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEE
T ss_pred ----CCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEe
Confidence 23577777653 555544322111 123334322 6788874
No 234
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=41.46 E-value=5.5e+02 Score=31.06 Aligned_cols=90 Identities=8% Similarity=0.046 Sum_probs=47.8
Q ss_pred eEEEEEEEeCCeEEEEEEEEecCceeEe--ccccCeEEEEEC--CEEEEEEeeeccCcccccccccccccceEEEEEEEe
Q 001387 801 GRILVFIVEDGKLQLIAEKETKGAVYSL--NAFNGKLLAAIN--QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTR 876 (1088)
Q Consensus 801 Gri~v~~i~~~kl~~~~~~~~~g~v~ai--~~~~g~Lv~~~g--~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~ 876 (1088)
++|..+.++....+.+....+. -+.+| ...+++|+++-. ++|..+.+ +|..+..-.........+..|.+.
T Consensus 537 ~~I~~~~~dG~~~~~lv~~~l~-~P~GLavD~~~~~LYwaD~~~~~I~~~d~----dG~~~~~v~~~~~~l~~P~glav~ 611 (791)
T 3m0c_C 537 AKIKKGGLNGVDIYSLVTENIQ-WPNGITLDLLSGRLYWVDSKLHSISSIDV----NGGNRKTILEDEKRLAHPFSLAVF 611 (791)
T ss_dssp CEEEEEETTSCCEEEEECSSCS-CEEEEEEETTTTEEEEEETTTTEEEEEET----TSCSCEEEEECTTTTSSEEEEEEE
T ss_pred CeEEEEecCCCceEEEEeCCCC-CceEEEEecCCCeEEEEeCCCCcEEEEec----CCCceEEEecCCCccCCCCEEEEe
Confidence 5666666654444444333332 34444 456788988864 45666554 232211111110112245677778
Q ss_pred CCEEEEEeccccEEEEEEec
Q 001387 877 GDFIVVGDLMKSISLLIYKH 896 (1088)
Q Consensus 877 ~~~I~vgD~~~Sv~~~~~~~ 896 (1088)
+++|++.|....- +.+++.
T Consensus 612 ~~~lYwtD~~~~~-I~~~dk 630 (791)
T 3m0c_C 612 EDKVFWTDIINEA-IFSANR 630 (791)
T ss_dssp TTEEEEEETTTTE-EEEEET
T ss_pred CCEEEEEECCCCE-EEEEeC
Confidence 9999999977653 344553
No 235
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=40.12 E-value=3.3e+02 Score=28.04 Aligned_cols=123 Identities=11% Similarity=0.100 Sum_probs=58.9
Q ss_pred cceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cC-eEEEEEC-------CEEEEEEeeeccCcccccccc-ccc---c
Q 001387 799 TKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NG-KLLAAIN-------QKIQLYKWMLRDDGTRELQSE-CGH---H 865 (1088)
Q Consensus 799 ~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g-~Lv~~~g-------~~l~v~~~~~~~~~~~~L~~~-~~~---~ 865 (1088)
..+.|+.|+...++++.+. ... .+..++-- +| .|+++.. +.|++|+++ ..+ +... ... .
T Consensus 167 ~~~~v~~~d~~~g~~~~~~--~~~-~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~--~~~---l~~~~~~~~~~~ 238 (305)
T 3dr2_A 167 AHHSVYRLPPDGSPLQRMA--DLD-HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWR--DGA---LHDRRHFASVPD 238 (305)
T ss_dssp SCEEEEEECSSSCCCEEEE--EES-SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEE--TTE---EEEEEEEECCSS
T ss_pred CCCeEEEEcCCCCcEEEEe--cCC-CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEec--CCC---ccCCeEEEECCC
Confidence 3577777766556666554 332 23344422 34 4666543 467777763 111 2111 000 1
Q ss_pred cceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCc-eEEEEccCCcEEEEe
Q 001387 866 GHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDD-IYLGAENNFNLFTVR 937 (1088)
Q Consensus 866 ~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~-~~l~~D~~gnl~~l~ 937 (1088)
..+..+.+...|+ |++++ ..+ +..|+++...+..+.... .++++.|-.++ .+.++. .+.|+.+.
T Consensus 239 ~~pdgi~~d~~G~-lwv~~-~~g--v~~~~~~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~-~~~l~~~~ 303 (305)
T 3dr2_A 239 GLPDGFCVDRGGW-LWSSS-GTG--VCVFDSDGQLLGHIPTPG---TASNCTFDQAQQRLFITG-GPCLWMLP 303 (305)
T ss_dssp SCCCSEEECTTSC-EEECC-SSE--EEEECTTSCEEEEEECSS---CCCEEEECTTSCEEEEEE-TTEEEEEE
T ss_pred CCCCeEEECCCCC-EEEec-CCc--EEEECCCCCEEEEEECCC---ceeEEEEeCCCCEEEEEc-CCeEEEEE
Confidence 1112233344455 88888 556 456788666555554322 34455554333 333332 24455443
No 236
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=38.90 E-value=3.6e+02 Score=28.17 Aligned_cols=140 Identities=11% Similarity=0.025 Sum_probs=73.7
Q ss_pred CceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cCeEEEEECCEEEEEEeeeccCcccc-
Q 001387 780 SNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAINQKIQLYKWMLRDDGTRE- 857 (1088)
Q Consensus 780 ~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g~Lv~~~g~~l~v~~~~~~~~~~~~- 857 (1088)
+..++++++ ..|+|+.|+...++.+.. ...+.|.++..- +|+++++....|++++.+ .++.+
T Consensus 60 ~~~l~~~d~----------~~~~i~~~d~~~~~~~~~---~~~~~v~~i~~~~dg~l~v~~~~gl~~~d~~---~g~~~~ 123 (326)
T 2ghs_A 60 SGTAWWFNI----------LERELHELHLASGRKTVH---ALPFMGSALAKISDSKQLIASDDGLFLRDTA---TGVLTL 123 (326)
T ss_dssp TTEEEEEEG----------GGTEEEEEETTTTEEEEE---ECSSCEEEEEEEETTEEEEEETTEEEEEETT---TCCEEE
T ss_pred CCEEEEEEC----------CCCEEEEEECCCCcEEEE---ECCCcceEEEEeCCCeEEEEECCCEEEEECC---CCcEEE
Confidence 456666665 246788887766665432 345678888754 678888888887766542 23221
Q ss_pred cccccccccceEEEEEEEe-CCEEEEEeccc-----cEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCc-eEEEEcc-
Q 001387 858 LQSECGHHGHILALYVQTR-GDFIVVGDLMK-----SISLLIYKHEEGAIEERARDYNANWMSAVEILDDD-IYLGAEN- 929 (1088)
Q Consensus 858 L~~~~~~~~~~~~~~l~~~-~~~I~vgD~~~-----Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~-~~l~~D~- 929 (1088)
+.....-.....+..+.+. +..+++++... .-.+++++ ..++..+..+.. ....+.+-.++ .+.++|.
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~--~~~~i~~s~dg~~lyv~~~~ 199 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADIS--IPNSICFSPDGTTGYFVDTK 199 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEES--SEEEEEECTTSCEEEEEETT
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCc--ccCCeEEcCCCCEEEEEECC
Confidence 2111000011223444443 33578887632 34566776 355555432211 12233333344 3445554
Q ss_pred CCcEEEEeeC
Q 001387 930 NFNLFTVRKN 939 (1088)
Q Consensus 930 ~gnl~~l~~~ 939 (1088)
.+.|+.+..+
T Consensus 200 ~~~I~~~d~~ 209 (326)
T 2ghs_A 200 VNRLMRVPLD 209 (326)
T ss_dssp TCEEEEEEBC
T ss_pred CCEEEEEEcc
Confidence 5778888765
No 237
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=38.24 E-value=2.8e+02 Score=28.70 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=39.1
Q ss_pred EEEEEEe-CCEEEEEecc-ccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCceEEEEcc-CCcEEEEee
Q 001387 870 ALYVQTR-GDFIVVGDLM-KSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAEN-NFNLFTVRK 938 (1088)
Q Consensus 870 ~~~l~~~-~~~I~vgD~~-~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l~~D~-~gnl~~l~~ 938 (1088)
+..+... ++.++|+|.. ++..+++|+....++..++.-...+..........+.++++|. .|.++.+..
T Consensus 74 p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~ 145 (306)
T 2p4o_A 74 VSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDV 145 (306)
T ss_dssp EEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEET
T ss_pred ceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeC
Confidence 4444443 3357888864 3455677876667776665433333322333334445677775 777776664
No 238
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=36.85 E-value=5.9e+02 Score=30.04 Aligned_cols=204 Identities=8% Similarity=0.069 Sum_probs=102.5
Q ss_pred eEEEEeCCeEEEEEEcCCCCeEEEEEeCCCc------------------cCeEEEecCCCEEEEEEeecC----------
Q 001387 684 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEH------------------PRRICHQEQSRTFAICSLKNQ---------- 735 (1088)
Q Consensus 684 ~l~~~~~~~l~i~~l~~~~~~~~~~i~l~~t------------------p~~i~y~~~~~~~~v~~~~~~---------- 735 (1088)
.+++++++.+.+..+.... .+++..... +..+.++|+.+.++++..+..
T Consensus 165 ~la~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~ 241 (741)
T 2ecf_A 165 FVSFIRGRNLWVIDLASGR---QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEV 241 (741)
T ss_dssp EEEEEETTEEEEEETTTTE---EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEE
T ss_pred EEEEEeCCcEEEEecCCCC---EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCC
Confidence 4777888888777765431 223322221 477899999998888765421
Q ss_pred -------------CCcCcceeEEEEEEeCCC-ceEEEEEECC--CCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCc
Q 001387 736 -------------SCAEESEMHFVRLLDDQT-FEFISTYPLD--TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPT 799 (1088)
Q Consensus 736 -------------~~~~~~~~s~l~lid~~t-~~~i~~~~~~--~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~ 799 (1088)
..++......|.++|..+ .+... .... ....+.++ .+ .++ ++|+++.... ...
T Consensus 242 ~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~-~~~~~~~~~~~~~~---~~-pDg-~~l~~~~~~~-----~~~ 310 (741)
T 2ecf_A 242 YADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQW-IDLGKEQDIYLARV---NW-RDP-QHLSFQRQSR-----DQK 310 (741)
T ss_dssp CSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEE-ECCCSCSSEEEEEE---EE-EET-TEEEEEEEET-----TSS
T ss_pred CCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEE-ecCCCCcceEEEEE---Ee-CCC-CEEEEEEecc-----cCC
Confidence 001112334788888877 65432 2222 22333333 33 333 4555554321 135
Q ss_pred ceEEEEEEEeCCeEEEEEEEEecC---ceeEeccc-cCeEEEEEC--CEEEEEEeeeccCcccccccccccccceEE-EE
Q 001387 800 KGRILVFIVEDGKLQLIAEKETKG---AVYSLNAF-NGKLLAAIN--QKIQLYKWMLRDDGTRELQSECGHHGHILA-LY 872 (1088)
Q Consensus 800 ~Gri~v~~i~~~kl~~~~~~~~~g---~v~ai~~~-~g~Lv~~~g--~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~-~~ 872 (1088)
.+.|+++++..++.+.+......+ .+.++.-- +|+++++.+ ....+|.++.. +. +............ ..
T Consensus 311 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~--~~--~~~l~~~~~~v~~~~~ 386 (741)
T 2ecf_A 311 KLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSK--GK--AAALTHGNWSVDELLA 386 (741)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSS--SC--EEESCCSSSCEEEEEE
T ss_pred eEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCC--CC--eeeeeecceEEEeEeE
Confidence 688999988877777666554433 22333322 566655544 33566666421 22 2222111111211 22
Q ss_pred EEEeCCEEEEEeccc---cEEEEEEeccCCeEEEEe
Q 001387 873 VQTRGDFIVVGDLMK---SISLLIYKHEEGAIEERA 905 (1088)
Q Consensus 873 l~~~~~~I~vgD~~~---Sv~~~~~~~~~~~l~~~~ 905 (1088)
.+..+++|++.-..+ .+.++..+........+.
T Consensus 387 ~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~ 422 (741)
T 2ecf_A 387 VDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS 422 (741)
T ss_dssp EETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC
T ss_pred EeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc
Confidence 344566776544333 455666654443344443
No 239
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=35.91 E-value=4.4e+02 Score=28.30 Aligned_cols=61 Identities=10% Similarity=-0.083 Sum_probs=36.2
Q ss_pred CCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCc--eEEEEccCCcEEEEeeCC
Q 001387 877 GDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDD--IYLGAENNFNLFTVRKNS 940 (1088)
Q Consensus 877 ~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~--~~l~~D~~gnl~~l~~~~ 940 (1088)
+.+|+-|-.-+.+.+............. .....++++.|-.++ .++.+..+|.+.+++...
T Consensus 156 ~~~las~s~D~tv~~Wd~~~~~~~~~~~---~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t 218 (393)
T 4gq1_A 156 EQVIASVGDDCTLIIWRLTDEGPILAGY---PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTL 218 (393)
T ss_dssp EEEEEEEETTSEEEEEEEETTEEEEEEE---ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC
T ss_pred CCEEEEEECCCeEEEEECCCCceeeeec---CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCC
Confidence 4566666666666664433222122222 234567788887554 467888999999998653
No 240
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=33.89 E-value=4.1e+02 Score=27.39 Aligned_cols=201 Identities=10% Similarity=0.032 Sum_probs=94.9
Q ss_pred CCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEE-CCCCceEeEEEEEEEcCCCceEEEEEee
Q 001387 711 LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYP-LDTFEYGCSILSCSFSDDSNVYYCVGTA 789 (1088)
Q Consensus 711 l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~-~~~~E~v~si~~~~~~~~~~~~i~VGT~ 789 (1088)
.+..|..++++++.+.++...... .....|..+|+.+.+....+. ..+...+.++ .+..++ . +.+++.
T Consensus 85 ~~~~~~~i~~~~dg~l~v~~~~~~------~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i---~~d~~g-~-l~v~~~ 153 (333)
T 2dg1_A 85 HKANPAAIKIHKDGRLFVCYLGDF------KSTGGIFAATENGDNLQDIIEDLSTAYCIDDM---VFDSKG-G-FYFTDF 153 (333)
T ss_dssp SSSSEEEEEECTTSCEEEEECTTS------SSCCEEEEECTTSCSCEEEECSSSSCCCEEEE---EECTTS-C-EEEEEC
T ss_pred CCCCcceEEECCCCcEEEEeCCCC------CCCceEEEEeCCCCEEEEEEccCccCCcccce---EECCCC-C-EEEEec
Confidence 456788899998887665442210 012468888887655332221 1223344443 344333 3 445553
Q ss_pred eeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cC-eEEEEE--CCEEEEEEeeeccCcccccc---ccc
Q 001387 790 YVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NG-KLLAAI--NQKIQLYKWMLRDDGTRELQ---SEC 862 (1088)
Q Consensus 790 ~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g-~Lv~~~--g~~l~v~~~~~~~~~~~~L~---~~~ 862 (1088)
.. ......|+|+.++...++++.+.. ....+.+++-- +| .|+++. ++.|++|+.+ .++. .+. +..
T Consensus 154 ~~---~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~--~~g~-~~~~~~~~~ 225 (333)
T 2dg1_A 154 RG---YSTNPLGGVYYVSPDFRTVTPIIQ--NISVANGIALSTDEKVLWVTETTANRLHRIALE--DDGV-TIQPFGATI 225 (333)
T ss_dssp CC---BTTBCCEEEEEECTTSCCEEEEEE--EESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC--TTSS-SEEEEEEEE
T ss_pred cc---cccCCCceEEEEeCCCCEEEEeec--CCCcccceEECCCCCEEEEEeCCCCeEEEEEec--CCCc-CcccccceE
Confidence 21 112345777777654445654432 12335555432 34 476665 3678777752 1221 111 000
Q ss_pred --ccccceEEEEEEEe-CCEEEEEeccccEEEEEEeccCCeEEEEeccCC----CceeEEEEEeeC-ceEEEEccCC
Q 001387 863 --GHHGHILALYVQTR-GDFIVVGDLMKSISLLIYKHEEGAIEERARDYN----ANWMSAVEILDD-DIYLGAENNF 931 (1088)
Q Consensus 863 --~~~~~~~~~~l~~~-~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~----~~~v~~~~~l~~-~~~l~~D~~g 931 (1088)
.......+..+... +..+++++...+ .+..|+.+...+..+..... ...+.++.+-.+ +.+.+++..|
T Consensus 226 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~-~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 226 PYYFTGHEGPDSCCIDSDDNLYVAMYGQG-RVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEECCSSSEEEEEEEBTTCCEEEEEETTT-EEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred EEecCCCCCCCceEECCCCCEEEEEcCCC-EEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 01111134444443 235788876544 23456775555554432211 013455555333 2444444443
No 241
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=32.72 E-value=5.1e+02 Score=28.11 Aligned_cols=199 Identities=10% Similarity=0.066 Sum_probs=92.2
Q ss_pred ceeEEEEeCCCCCCCCCccEEEEEEecC--CEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEE
Q 001387 530 YEISCLDINPIGENPSYSQIAAVGMWTD--ISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLN 607 (1088)
Q Consensus 530 ~~is~l~~~~~~~~~~~~~~~~vg~w~~--~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~ 607 (1088)
..+.+++++| .+..++.+.+.+ ..|.+|++.+-+........ ..+.++.+.+ .++..++.+..+|..-.
T Consensus 179 ~~v~~~~~Sp------dg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~--~~~~~~~~sp-dg~~la~~~~~~g~~~i 249 (415)
T 2hqs_A 179 QPLMSPAWSP------DGSKLAYVTFESGRSALVIQTLANGAVRQVASFP--RHNGAPAFSP-DGSKLAFALSKTGSLNL 249 (415)
T ss_dssp SCEEEEEECT------TSSEEEEEECTTSSCEEEEEETTTCCEEEEECCS--SCEEEEEECT-TSSEEEEEECTTSSCEE
T ss_pred CcceeeEEcC------CCCEEEEEEecCCCcEEEEEECCCCcEEEeecCC--CcccCEEEcC-CCCEEEEEEecCCCceE
Confidence 4688888875 256777777722 49999999764443211111 1233443332 12333446777777556
Q ss_pred EEEecCCCccccceeeecCccceeEEEEEeCCceEEEEecCC---ceE-EEe-cCCcEEEeecccccceeeeccCCCCCC
Q 001387 608 FLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDR---PTV-IYS-SNKKLLYSNVNLKEVSHMCPFNSAAFP 682 (1088)
Q Consensus 608 y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~---p~~-i~~-~~~~~~~~~l~~~~i~~~~~f~~~~~~ 682 (1088)
|.++..++.+. ...-....+.-..+. .+...++..+++ +.+ ++. ..+...........+. ...|+. -.
T Consensus 250 ~~~d~~~~~~~---~l~~~~~~~~~~~~s-pdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~-~~~~sp--dG 322 (415)
T 2hqs_A 250 YVMDLASGQIR---QVTDGRSNNTEPTWF-PDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQ-DADVSS--DG 322 (415)
T ss_dssp EEEETTTCCEE---ECCCCSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEE-EEEECT--TS
T ss_pred EEEECCCCCEE---eCcCCCCcccceEEC-CCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCccc-CeEECC--CC
Confidence 66665444321 111111122212232 223334433322 122 222 1222211000111111 111211 12
Q ss_pred CeEEEEeC--C--eEEEEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCc
Q 001387 683 DSLAIAKE--G--ELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTF 754 (1088)
Q Consensus 683 ~~l~~~~~--~--~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~ 754 (1088)
+.+++... + .+.+..+.... .+.+.-...+..+.++|+.+.++.++.+. ....|.++|..+.
T Consensus 323 ~~l~~~~~~~g~~~i~~~d~~~~~---~~~l~~~~~~~~~~~spdg~~l~~~s~~~-------~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 323 KFMVMVSSNGGQQHIAKQDLATGG---VQVLSSTFLDETPSLAPNGTMVIYSSSQG-------MGSVLNLVSTDGR 388 (415)
T ss_dssp SEEEEEEECSSCEEEEEEETTTCC---EEECCCSSSCEEEEECTTSSEEEEEEEET-------TEEEEEEEETTSC
T ss_pred CEEEEEECcCCceEEEEEECCCCC---EEEecCCCCcCCeEEcCCCCEEEEEEcCC-------CccEEEEEECCCC
Confidence 24555542 2 34444443321 23444444677789999999887776543 2457888887543
No 242
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=31.71 E-value=7.4e+02 Score=29.63 Aligned_cols=108 Identities=11% Similarity=-0.007 Sum_probs=58.8
Q ss_pred cCceeEeccc-cCeEEEEE-CCEEEEEEeeeccCcccccccc---cccccceEEEEEEEe-CCEEEEEeccccEEEEEEe
Q 001387 822 KGAVYSLNAF-NGKLLAAI-NQKIQLYKWMLRDDGTRELQSE---CGHHGHILALYVQTR-GDFIVVGDLMKSISLLIYK 895 (1088)
Q Consensus 822 ~g~v~ai~~~-~g~Lv~~~-g~~l~v~~~~~~~~~~~~L~~~---~~~~~~~~~~~l~~~-~~~I~vgD~~~Sv~~~~~~ 895 (1088)
...|.+++.- +|.|.+|. ++-|..++.. ..++... ... ....+.++... ++.|++|+...++ ++|+
T Consensus 362 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~-----~~~~~~~~~~~~~-~~~~v~~i~~d~~g~lWigt~~~Gl--~~~~ 433 (781)
T 3v9f_A 362 NKVVSSVCDDGQGKLWIGTDGGGINVFENG-----KRVAIYNKENREL-LSNSVLCSLKDSEGNLWFGTYLGNI--SYYN 433 (781)
T ss_dssp SSCEEEEEECTTSCEEEEEBSSCEEEEETT-----EEEEECC-----C-CCSBEEEEEECTTSCEEEEETTEEE--EEEC
T ss_pred CcceEEEEEcCCCCEEEEeCCCcEEEEECC-----CCeEEEccCCCCC-CCcceEEEEECCCCCEEEEeccCCE--EEEc
Confidence 3568888876 48899988 6778776531 1112111 000 01124445444 5679999887886 4567
Q ss_pred ccCCeEEEEecc-CCCceeEEEEEeeCceEEEEccCCcEEEEee
Q 001387 896 HEEGAIEERARD-YNANWMSAVEILDDDIYLGAENNFNLFTVRK 938 (1088)
Q Consensus 896 ~~~~~l~~~~~D-~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~ 938 (1088)
...+++.....+ .....+.++..-.++.+.++.. +.|..+..
T Consensus 434 ~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~ 476 (781)
T 3v9f_A 434 TRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDL 476 (781)
T ss_dssp SSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEES
T ss_pred CCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeC
Confidence 766777666432 2234455443323345433333 56666653
No 243
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=31.26 E-value=4.7e+02 Score=27.21 Aligned_cols=155 Identities=9% Similarity=0.056 Sum_probs=74.7
Q ss_pred CccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeC
Q 001387 713 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVL 792 (1088)
Q Consensus 713 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~ 792 (1088)
..|.-+++++..+.+.++-.. ...|..+++.......-.. .....+..++ +...+...++...
T Consensus 77 ~~p~glavd~~~~~ly~~d~~---------~~~I~~~~~~g~~~~~~~~-~~~~~P~~ia---vdp~~g~ly~~d~---- 139 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDSV---------LGTVSVADTKGVKRKTLFR-ENGSKPRAIV---VDPVHGFMYWTDW---- 139 (316)
T ss_dssp SCCCEEEEETTTTEEEEEETT---------TTEEEEEETTSSSEEEEEE-CTTCCEEEEE---EETTTTEEEEEEC----
T ss_pred CCcCEEEEeecCCeEEEEECC---------CCEEEEEeCCCCceEEEEE-CCCCCcceEE---eCCCCCEEEEEcc----
Confidence 578889988654443333221 2456777764322111111 1223444443 2221233333221
Q ss_pred CCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEec--cccCeEEEEEC--CEEEEEEeeeccCcc-c-cccccccccc
Q 001387 793 PEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLN--AFNGKLLAAIN--QKIQLYKWMLRDDGT-R-ELQSECGHHG 866 (1088)
Q Consensus 793 ~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~--~~~g~Lv~~~g--~~l~v~~~~~~~~~~-~-~L~~~~~~~~ 866 (1088)
+ ..++|+.+..+....+.+....+. -+..|+ .-+++|+++-. ++|..++++ |. . .+.... ..
T Consensus 140 -~----~~~~I~~~~~dG~~~~~~~~~~~~-~P~gla~d~~~~~lY~~D~~~~~I~~~d~d----g~~~~~~~~~~--~~ 207 (316)
T 1ijq_A 140 -G----TPAKIKKGGLNGVDIYSLVTENIQ-WPNGITLDLLSGRLYWVDSKLHSISSIDVN----GGNRKTILEDE--KR 207 (316)
T ss_dssp -S----SSCEEEEEETTSCCEEEEECSSCS-CEEEEEEETTTTEEEEEETTTTEEEEEETT----SCSCEEEEECT--TT
T ss_pred -C----CCCeEEEEcCCCCCeEEEEECCCC-CceEEEEeccCCEEEEEECCCCeEEEEecC----CCceEEEeecC--Cc
Confidence 1 246787776654334433322222 233443 34678887764 467766652 32 1 121110 11
Q ss_pred ceEEEEEEEeCCEEEEEeccccEEEEEEecc
Q 001387 867 HILALYVQTRGDFIVVGDLMKSISLLIYKHE 897 (1088)
Q Consensus 867 ~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~ 897 (1088)
...|..+.+.++.+++.|...+ .+.++++.
T Consensus 208 ~~~P~giav~~~~ly~~d~~~~-~V~~~~~~ 237 (316)
T 1ijq_A 208 LAHPFSLAVFEDKVFWTDIINE-AIFSANRL 237 (316)
T ss_dssp TSSEEEEEEETTEEEEEETTTT-EEEEEETT
T ss_pred cCCcEEEEEECCEEEEEECCCC-eEEEEeCC
Confidence 1235556667899999996655 35667653
No 244
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=30.88 E-value=4.5e+02 Score=26.89 Aligned_cols=116 Identities=12% Similarity=0.167 Sum_probs=66.6
Q ss_pred eEEEEEEEEecCc--eeEecccc-CeEEEEEC----CEEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEEEEe
Q 001387 812 KLQLIAEKETKGA--VYSLNAFN-GKLLAAIN----QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGD 884 (1088)
Q Consensus 812 kl~~~~~~~~~g~--v~ai~~~~-g~Lv~~~g----~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD 884 (1088)
..+++.+..+.+. +..+.--. |+|+++.| ++|.+++.. .+ ++.+.........+..+...++++++++
T Consensus 8 ~~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~---tg--~v~~~i~l~~~~fgeGi~~~g~~lyv~t 82 (266)
T 2iwa_A 8 IVEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQ---TG--KVENIHKMDDSYFGEGLTLLNEKLYQVV 82 (266)
T ss_dssp EEEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETT---TC--CEEEEEECCTTCCEEEEEEETTEEEEEE
T ss_pred CceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECC---CC--CEEEEEecCCCcceEEEEEeCCEEEEEE
Confidence 3456666666654 34565444 78999986 578777642 12 2333222222334445566799999999
Q ss_pred ccccEEEEEEeccCCeE-EEEecc-CCCceeEEEEEeeCceEEEEccCCcEEEEe
Q 001387 885 LMKSISLLIYKHEEGAI-EERARD-YNANWMSAVEILDDDIYLGAENNFNLFTVR 937 (1088)
Q Consensus 885 ~~~Sv~~~~~~~~~~~l-~~~~~D-~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~ 937 (1088)
-..+.. +.|+.+..+. ..+.-. +. -|..+ . |.+.++++|..+.++++.
T Consensus 83 ~~~~~v-~viD~~t~~v~~~i~~g~~~-g~glt--~-Dg~~l~vs~gs~~l~viD 132 (266)
T 2iwa_A 83 WLKNIG-FIYDRRTLSNIKNFTHQMKD-GWGLA--T-DGKILYGSDGTSILYEID 132 (266)
T ss_dssp TTCSEE-EEEETTTTEEEEEEECCSSS-CCEEE--E-CSSSEEEECSSSEEEEEC
T ss_pred ecCCEE-EEEECCCCcEEEEEECCCCC-eEEEE--E-CCCEEEEECCCCeEEEEE
Confidence 888764 4588765443 233222 22 23222 1 455677888777776665
No 245
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=29.95 E-value=5.1e+02 Score=27.23 Aligned_cols=122 Identities=9% Similarity=0.008 Sum_probs=61.0
Q ss_pred eEEEEEEEeCCeEEEEEEEEecCce-eEeccccCeEEEEEC--------CEEEEEEeeeccCcccccccccccccc--eE
Q 001387 801 GRILVFIVEDGKLQLIAEKETKGAV-YSLNAFNGKLLAAIN--------QKIQLYKWMLRDDGTRELQSECGHHGH--IL 869 (1088)
Q Consensus 801 Gri~v~~i~~~kl~~~~~~~~~g~v-~ai~~~~g~Lv~~~g--------~~l~v~~~~~~~~~~~~L~~~~~~~~~--~~ 869 (1088)
..+++|+...++.+.+........- .+++.++++|++.-| +.+..|+++.. ...++. ......+ ..
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~-~~~W~~--~~~~~~~~~~~ 244 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGN-NLKWNK--LAPVSSPDGVA 244 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC----CEEEE--CCCSSTTTCCB
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCC-CCcEEe--cCCCCCCcccc
Confidence 5788998888888887654332222 566667888776644 23455554212 122222 2111111 11
Q ss_pred EEEEEEeCCEEEE-Eecc----------------c----cEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCceEE
Q 001387 870 ALYVQTRGDFIVV-GDLM----------------K----SISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYL 925 (1088)
Q Consensus 870 ~~~l~~~~~~I~v-gD~~----------------~----Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l 925 (1088)
..++.+.++.|++ |-.. . .-.+..|+.+.++-..++.-+.+|.-.++..+++..++
T Consensus 245 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v 321 (357)
T 2uvk_A 245 GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLI 321 (357)
T ss_dssp SCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEE
T ss_pred cceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEE
Confidence 1223455665554 4321 0 02345678877777777766777765444445444433
No 246
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=28.39 E-value=5.8e+02 Score=27.35 Aligned_cols=154 Identities=10% Similarity=0.094 Sum_probs=78.3
Q ss_pred eEEEEEeeeeCCCC---CCCcceEEEEEEEe--CCeEEEEEEEE-----ecCceeEecccc---C--eEEEE----ECCE
Q 001387 782 VYYCVGTAYVLPEE---NEPTKGRILVFIVE--DGKLQLIAEKE-----TKGAVYSLNAFN---G--KLLAA----INQK 842 (1088)
Q Consensus 782 ~~i~VGT~~~~~~e---~~~~~Gri~v~~i~--~~kl~~~~~~~-----~~g~v~ai~~~~---g--~Lv~~----~g~~ 842 (1088)
..+.++++..+|+- +....|+|++++.+ +.+.+.+.-.. ...-++.|..+. | +|+++ .+..
T Consensus 61 G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ 140 (355)
T 3sre_A 61 GLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSST 140 (355)
T ss_dssp SEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCE
T ss_pred CeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCe
Confidence 34555664443321 12368999999887 34555444332 234677777653 3 46666 3578
Q ss_pred EEEEEeeeccCcccccccccccccceEEEEEEEe-CCEEEEEecc----------------ccEEEEEEeccCCeEEEEe
Q 001387 843 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTR-GDFIVVGDLM----------------KSISLLIYKHEEGAIEERA 905 (1088)
Q Consensus 843 l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~-~~~I~vgD~~----------------~Sv~~~~~~~~~~~l~~~~ 905 (1088)
+.+|+++.. .+...+.....-.....+-.+.+. +..+++++.. ..=.+++|++ ++...++
T Consensus 141 ielf~~d~~-~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~ 217 (355)
T 3sre_A 141 VEVFKFQEE-EKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVA 217 (355)
T ss_dssp EEEEEEETT-TTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEE
T ss_pred EEEEEEECC-CCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEee
Confidence 889888532 122233222111111234444443 3466676641 2235677765 3555555
Q ss_pred ccCCCceeEEEEEeeCc-eEEEEcc-CCcEEEEeeCC
Q 001387 906 RDYNANWMSAVEILDDD-IYLGAEN-NFNLFTVRKNS 940 (1088)
Q Consensus 906 ~D~~~~~v~~~~~l~~~-~~l~~D~-~gnl~~l~~~~ 940 (1088)
.+...- ..+.+-.++ ++.++|. .+.++.|++++
T Consensus 218 ~~l~~p--NGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 218 EGFDFA--NGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EEESSE--EEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cCCccc--CcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 553221 123333333 5677886 67888888864
No 247
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=27.48 E-value=7.5e+02 Score=28.38 Aligned_cols=87 Identities=10% Similarity=-0.053 Sum_probs=51.0
Q ss_pred eEEEecCCCEEEEEEeecCC------CcCcceeEEEEEEeCCCceEEEEEECCCCce-----EeEEEEEEEcCCCc--eE
Q 001387 717 RICHQEQSRTFAICSLKNQS------CAEESEMHFVRLLDDQTFEFISTYPLDTFEY-----GCSILSCSFSDDSN--VY 783 (1088)
Q Consensus 717 ~i~y~~~~~~~~v~~~~~~~------~~~~~~~s~l~lid~~t~~~i~~~~~~~~E~-----v~si~~~~~~~~~~--~~ 783 (1088)
.++|+++.+.+.+.+....+ .++.....+|.-+|+.|++.+.+++..+++. +.+........+++ .+
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~ 318 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPL 318 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEE
Confidence 36788888877776543210 1222233578999999999999998875432 12222221111233 34
Q ss_pred EEEEeeeeCCCCCCCcceEEEEEEEeCCeE
Q 001387 784 YCVGTAYVLPEENEPTKGRILVFIVEDGKL 813 (1088)
Q Consensus 784 i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl 813 (1088)
+++++ ..|.+++++...+++
T Consensus 319 v~~~~----------~~G~l~~lD~~tG~~ 338 (571)
T 2ad6_A 319 LSHID----------RNGILYTLNRENGNL 338 (571)
T ss_dssp EEEEC----------TTSEEEEEETTTCCE
T ss_pred EEEeC----------CCcEEEEEECCCCCE
Confidence 55554 458888888776654
No 248
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=27.25 E-value=5.3e+02 Score=26.57 Aligned_cols=167 Identities=13% Similarity=0.092 Sum_probs=81.1
Q ss_pred EEEEEeCCC--ceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEec
Q 001387 745 FVRLLDDQT--FEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETK 822 (1088)
Q Consensus 745 ~l~lid~~t--~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~ 822 (1088)
.+..+|+.+ |+.+.....+... .++.. + +...+++|..... .......+++|+...++.+.+......
T Consensus 79 ~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~--~---~~~iyv~GG~~~~---~~~~~~~~~~yd~~~~~W~~~~~~p~~ 148 (318)
T 2woz_A 79 YFFQLDNVSSEWVGLPPLPSARCL--FGLGE--V---DDKIYVVAGKDLQ---TEASLDSVLCYDPVAAKWSEVKNLPIK 148 (318)
T ss_dssp EEEEEETTTTEEEECSCBSSCBCS--CEEEE--E---TTEEEEEEEEBTT---TCCEEEEEEEEETTTTEEEEECCCSSC
T ss_pred cEEEEeCCCCcEEECCCCCccccc--cceEE--E---CCEEEEEcCccCC---CCcccceEEEEeCCCCCEeECCCCCCc
Confidence 477788754 5444322222122 22222 2 2466777754311 223456788888877777766532211
Q ss_pred CceeEeccccCeEEEEECC--------EEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEE-EEecccc---EE
Q 001387 823 GAVYSLNAFNGKLLAAINQ--------KIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIV-VGDLMKS---IS 890 (1088)
Q Consensus 823 g~v~ai~~~~g~Lv~~~g~--------~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~-vgD~~~S---v~ 890 (1088)
-.-.+++.++++|++.-|. .+.+|+. .+ .+++. .......-...++.+.++.|+ +|-.... -.
T Consensus 149 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~--~~-~~W~~--~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 223 (318)
T 2woz_A 149 VYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNP--KK-GDWKD--LAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSAS 223 (318)
T ss_dssp EESCEEEEETTEEEEECCEESSSCBCCCEEEEET--TT-TEEEE--ECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEE
T ss_pred ccccEEEEECCEEEEEcCCCCCCCccceEEEEcC--CC-CEEEE--CCCCCCCcccceEEEECCEEEEEcCcCCCCccce
Confidence 1112334467877665442 3555553 21 22222 211111111122334566554 4432211 23
Q ss_pred EEEEeccCCeEEEEeccCCCceeEEEEEeeCceEEE
Q 001387 891 LLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLG 926 (1088)
Q Consensus 891 ~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l~ 926 (1088)
+..|+.+.++-..++.-+.+|.-.++..+++..++.
T Consensus 224 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~ 259 (318)
T 2woz_A 224 VEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAI 259 (318)
T ss_dssp EEEEETTTCCEEECCCCSSCCBSCEEEEETTEEEEE
T ss_pred EEEEECCCCeEEECCCCCCcccceEEEEECCEEEEE
Confidence 456888888888887666677654555555443443
No 249
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=27.00 E-value=5.4e+02 Score=26.55 Aligned_cols=134 Identities=11% Similarity=0.028 Sum_probs=66.8
Q ss_pred cceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cC-eEEEEE--CCEEEEEEeeeccCcccccccccccccceEEEEEE
Q 001387 799 TKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NG-KLLAAI--NQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQ 874 (1088)
Q Consensus 799 ~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g-~Lv~~~--g~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~ 874 (1088)
..|+|+.|+...++++.+.. .... +..|+-- +| .|+++- +++|+.|.++....+..+. ...... +..+.+.
T Consensus 163 ~~g~v~~~d~~~~~~~~~~~-~~~~-p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~--~~~~~g-P~gi~~d 237 (322)
T 2fp8_A 163 KTGRLIKYDPSTKETTLLLK-ELHV-PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEV--LVKIPN-PGNIKRN 237 (322)
T ss_dssp CCEEEEEEETTTTEEEEEEE-EESC-CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEE--EEECSS-EEEEEEC
T ss_pred CCceEEEEeCCCCEEEEecc-CCcc-CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccce--EEeCCC-CCCeEEC
Confidence 35899888766566665432 2222 2333322 33 577764 3678877753111111111 111122 2223333
Q ss_pred EeCCEEEEEeccc---------cEEEEEEeccCCeEEEEeccC-C-CceeEEEEEeeCceEEEEcc-CCcEEEEeeC
Q 001387 875 TRGDFIVVGDLMK---------SISLLIYKHEEGAIEERARDY-N-ANWMSAVEILDDDIYLGAEN-NFNLFTVRKN 939 (1088)
Q Consensus 875 ~~~~~I~vgD~~~---------Sv~~~~~~~~~~~l~~~~~D~-~-~~~v~~~~~l~~~~~l~~D~-~gnl~~l~~~ 939 (1088)
..| .|+|++... .-.+++|+++...+..+.... . ..+++++.+ .++.+.+++. .+.|..++..
T Consensus 238 ~~G-~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 238 ADG-HFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp TTS-CEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred CCC-CEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 334 488888762 345678888655555444221 1 234555544 5566666664 4556666543
No 250
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=26.91 E-value=8.1e+02 Score=28.57 Aligned_cols=67 Identities=19% Similarity=0.100 Sum_probs=41.2
Q ss_pred cEEEEEECC-CEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCC
Q 001387 490 SVNVATANA-SQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD 567 (1088)
Q Consensus 490 ~I~~a~~~~-~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~ 567 (1088)
.|...+.++ ..++++. ++.+..+++..++...+.. ....+.+++++| .+..++.+ . ++.|.+|++.+
T Consensus 83 ~v~~~~~spd~~~~~~~-~~~i~~~d~~~~~~~~l~~--~~~~~~~~~~Sp------dG~~la~~-~-~~~i~v~~~~~ 150 (706)
T 2z3z_A 83 PSFRTLDAGRGLVVLFT-QGGLVGFDMLARKVTYLFD--TNEETASLDFSP------VGDRVAYV-R-NHNLYIARGGK 150 (706)
T ss_dssp CCEEEEETTTTEEEEEE-TTEEEEEETTTTEEEEEEC--CTTCCTTCEECT------TSSEEEEE-E-TTEEEEEECBC
T ss_pred CceeEEECCCCeEEEEE-CCEEEEEECCCCceEEccC--CcccccCCcCCC------CCCEEEEE-E-CCeEEEEecCc
Confidence 466666654 4555554 5777776776666544422 234466666754 24566664 4 79999999875
No 251
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=26.67 E-value=5.2e+02 Score=26.22 Aligned_cols=190 Identities=14% Similarity=0.180 Sum_probs=94.7
Q ss_pred cCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEE
Q 001387 527 QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLL 606 (1088)
Q Consensus 527 ~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~ 606 (1088)
.+..++|.+++.+ ....+.+..+.++.|..++.. -+++....+....-++.+.+. ++..++++.=+++.++
T Consensus 24 g~~~~lSGla~~~------~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~--~~g~~~vs~E~~~~l~ 94 (255)
T 3qqz_A 24 GITNNISSLTWSA------QSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYI--GDNQFVISDERDYAIY 94 (255)
T ss_dssp TCCSCEEEEEEET------TTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEEC--STTEEEEEETTTTEEE
T ss_pred CcccCcceeEEeC------CCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEe--CCCEEEEEECCCCcEE
Confidence 3456799998864 134555555667888877876 444444444432345666544 3444445555778888
Q ss_pred EEEEecCCCccccceeeec--Ccccee--EEEE-EeCCceEEEEecCC-ceEEEecCC-----cEEEee-------cccc
Q 001387 607 NFLLNMKTGELTDRKKVSL--GTQPIT--LRTF-SSKNTTHVFAASDR-PTVIYSSNK-----KLLYSN-------VNLK 668 (1088)
Q Consensus 607 ~y~~~~~~~~l~~~~~~~l--G~~pv~--l~~~-~~~~~~~v~~~~~~-p~~i~~~~~-----~~~~~~-------l~~~ 668 (1088)
.|.++... .+.......+ +..|-. +.-+ -....+.++++.++ |.-++.-++ .+.... +...
T Consensus 95 ~~~v~~~~-~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~ 173 (255)
T 3qqz_A 95 VISLTPNS-EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLD 173 (255)
T ss_dssp EEEECTTC-CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSS
T ss_pred EEEcCCCC-eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccC
Confidence 88887643 2222222222 222210 0111 01122345555544 423332221 122110 0001
Q ss_pred cceeeeccCCCCCCCeEEEEeCCeEEEEEEcCCCCeEEEEEeCCC----------ccCeEEEecCCCEEEEE
Q 001387 669 EVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE----------HPRRICHQEQSRTFAIC 730 (1088)
Q Consensus 669 ~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~~~~~~i~l~~----------tp~~i~y~~~~~~~~v~ 730 (1088)
.+++++ |+ .-.+.+++.++.+=.+..++...+ ..+..+|.. .|.-|+++++.++|++.
T Consensus 174 d~S~l~-~d--p~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs 241 (255)
T 3qqz_A 174 DVSGAE-FN--QQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS 241 (255)
T ss_dssp CCCEEE-EE--TTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE
T ss_pred CceeEE-Ec--CCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc
Confidence 111111 11 112345555544445556665544 667777763 78889999999988874
No 252
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=26.19 E-value=5.8e+02 Score=26.67 Aligned_cols=51 Identities=22% Similarity=0.234 Sum_probs=32.3
Q ss_pred CEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCceEEEEcc
Q 001387 878 DFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAEN 929 (1088)
Q Consensus 878 ~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l~~D~ 929 (1088)
..++++|...+- +.+|+++.+++..+..++...+.+++.+-.++.+++++.
T Consensus 259 G~l~va~~~~~~-V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 259 HNIYVGDLAHSA-IGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp CCEEEEEGGGTE-EEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred CCEEEEccCCCe-EEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence 468899987763 567887456677777776556676666544444444333
No 253
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=25.67 E-value=48 Score=39.97 Aligned_cols=129 Identities=11% Similarity=0.004 Sum_probs=59.2
Q ss_pred cceEEEEEEEeCCeEEEEEEEEecCceeEec--cccCeEEEEE-C--CEEEEEEeeeccCcccc--cccccccccceEEE
Q 001387 799 TKGRILVFIVEDGKLQLIAEKETKGAVYSLN--AFNGKLLAAI-N--QKIQLYKWMLRDDGTRE--LQSECGHHGHILAL 871 (1088)
Q Consensus 799 ~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~--~~~g~Lv~~~-g--~~l~v~~~~~~~~~~~~--L~~~~~~~~~~~~~ 871 (1088)
..++|.+++......+.+...... .+..|+ +.+|+|+++. | .+|+.+.+ +|..+ +... .. ..+..+
T Consensus 473 ~~~~I~v~d~dg~~~~~l~~~~~~-~P~giavDp~~g~ly~td~~~~~~I~~~~~----dG~~~~~l~~~-~l-~~PnGl 545 (699)
T 1n7d_A 473 VLGTVSVADTKGVKRKTLFREQGS-KPRAIVVDPVHGFMYWTDWGTPAKIKKGGL----NGVDIYSLVTE-NI-QWPNGI 545 (699)
T ss_dssp TTSCEEEEBSSSCCEEEECCCSSC-CCCCEECCSSSSCCEECCCSSSCCEEBCCS----SSCCCCEESCS-SC-SSCCCE
T ss_pred cCCeEEEEecCCCceEEEEeCCCC-CcceEEEccCCCcEEEcccCCCCeEEEEeC----CCCCeeEEEeC-CC-CCccEE
Confidence 356777776654444444322222 233333 3467777664 2 45655443 23211 1111 11 112234
Q ss_pred EEEEeCCEEEEEeccccEEEEEEeccCCeEEEEecc-CCCceeEEEEEeeCceEEEEccC-CcEEEE
Q 001387 872 YVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARD-YNANWMSAVEILDDDIYLGAENN-FNLFTV 936 (1088)
Q Consensus 872 ~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D-~~~~~v~~~~~l~~~~~l~~D~~-gnl~~l 936 (1088)
.+...+++|+++|..... +.+++.+......+... ....+..++. ++.+.++.+|.. +.|..+
T Consensus 546 avd~~~~~LY~aD~~~~~-I~~~d~dG~~~~~~~~~~~~~~~P~gla-vd~~~lywtd~~~~~V~~~ 610 (699)
T 1n7d_A 546 TLDLLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLAHPFSLA-VFEDKVFWTDIINEAIFSA 610 (699)
T ss_dssp EECTTTCCEEEEETTTTE-EEEECSSSSCCEEECCCSSSCSSCCCCE-EETTEEEEECSTTTCEEEE
T ss_pred EEeccCCEEEEEecCCCe-EEEEccCCCceEEEEecCCcCCCceEeE-EECCEEEEEeCCCCeEEEE
Confidence 444457899999987653 34555544333333322 1111111222 245677777754 344444
No 254
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=25.35 E-value=59 Score=26.21 Aligned_cols=30 Identities=10% Similarity=0.290 Sum_probs=24.7
Q ss_pred cCCHHH---HHHHHHhcCCCHHHHHHHHHHHhc
Q 001387 1057 DLSRTR---MDEISKTMNVSVEELCKRVEELTR 1086 (1088)
Q Consensus 1057 ~l~~~~---q~~i~~~~~~~~~~i~~~l~~l~~ 1086 (1088)
.|++.+ ..+||+++|++..+|.+.|-.|++
T Consensus 23 ~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~k 55 (75)
T 1sfu_A 23 SLNTNDYTTAISLSNRLKINKKKINQQLYKLQK 55 (75)
T ss_dssp TSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455544 689999999999999999988864
No 255
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=22.94 E-value=7.3e+02 Score=26.65 Aligned_cols=87 Identities=15% Similarity=0.082 Sum_probs=46.0
Q ss_pred ceEEEEEEEeCCeEEEEEEEEecCceeEec--cccCeEEEEEC--CEEEEEEeeeccCccc--ccccccccccceEEEEE
Q 001387 800 KGRILVFIVEDGKLQLIAEKETKGAVYSLN--AFNGKLLAAIN--QKIQLYKWMLRDDGTR--ELQSECGHHGHILALYV 873 (1088)
Q Consensus 800 ~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~--~~~g~Lv~~~g--~~l~v~~~~~~~~~~~--~L~~~~~~~~~~~~~~l 873 (1088)
.++|+.+..+....+.+....+. -+..|+ .-+++|+++-. ++|..+++ +|.. .+.. .....|..+
T Consensus 224 ~~~I~r~~~dG~~~~~~~~~~~~-~PnGlavd~~~~~lY~aD~~~~~I~~~d~----dG~~~~~~~~----~~~~~P~gi 294 (386)
T 3v65_B 224 TPRIEASSMDGSGRRIIADTHLF-WPNGLTIDYAGRRMYWVDAKHHVIERANL----DGSHRKAVIS----QGLPHPFAI 294 (386)
T ss_dssp SCEEEEEETTSCSCEEEECSSCS-CEEEEEEEGGGTEEEEEETTTTEEEEECT----TSCSCEEEEC----SSCSSEEEE
T ss_pred CCEEEEEeCCCCCcEEEEECCCC-CeeeEEEeCCCCEEEEEECCCCEEEEEeC----CCCeeEEEEE----CCCCCceEE
Confidence 46777766654333333322222 233443 35778887754 45555553 2321 1211 112235566
Q ss_pred EEeCCEEEEEeccccEEEEEEec
Q 001387 874 QTRGDFIVVGDLMKSISLLIYKH 896 (1088)
Q Consensus 874 ~~~~~~I~vgD~~~Sv~~~~~~~ 896 (1088)
.+.++.+++.|...+ .+.+++.
T Consensus 295 av~~~~ly~td~~~~-~V~~~~~ 316 (386)
T 3v65_B 295 TVFEDSLYWTDWHTK-SINSANK 316 (386)
T ss_dssp EEETTEEEEEETTTT-EEEEEET
T ss_pred EEECCEEEEeeCCCC-eEEEEEC
Confidence 668899999997665 3566763
No 256
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=22.70 E-value=1e+03 Score=28.30 Aligned_cols=108 Identities=12% Similarity=0.069 Sum_probs=60.6
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEE-EecCceeEeccc-cCeEEEEECCEEEEEEeeeccCccccc
Q 001387 781 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEK-ETKGAVYSLNAF-NGKLLAAINQKIQLYKWMLRDDGTREL 858 (1088)
Q Consensus 781 ~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~-~~~g~v~ai~~~-~g~Lv~~~g~~l~v~~~~~~~~~~~~L 858 (1088)
...+-|||. .|.|+.|+...++++..... .....|+++..- +|.|.++...-|+.|+.. .+ ++
T Consensus 417 ~g~lWigt~----------~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~---~~--~~ 481 (781)
T 3v9f_A 417 EGNLWFGTY----------LGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTHAGVFVIDLA---SK--KV 481 (781)
T ss_dssp TSCEEEEET----------TEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEETTEEEEEESS---SS--SC
T ss_pred CCCEEEEec----------cCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEECCceEEEeCC---CC--eE
Confidence 344667872 24566665444555433211 123568888766 688999988888776632 11 22
Q ss_pred ccccccc---c-ceEEEEEEEe-CCEEEEEeccccEEEEEEeccCCeEEEEe
Q 001387 859 QSECGHH---G-HILALYVQTR-GDFIVVGDLMKSISLLIYKHEEGAIEERA 905 (1088)
Q Consensus 859 ~~~~~~~---~-~~~~~~l~~~-~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~ 905 (1088)
....... . ...+.++... ++.|.+|+..+|+ ++|+++.+++....
T Consensus 482 ~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl--~~~~~~~~~~~~~~ 531 (781)
T 3v9f_A 482 IHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGV--GIYTPDMQLVRKFN 531 (781)
T ss_dssp CEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCE--EEECTTCCEEEEEC
T ss_pred EecccCcccccccceeEEEEEcCCCCEEEEEcCCCE--EEEeCCCCeEEEcc
Confidence 1111000 0 1234454443 4579999988886 56787767776654
No 257
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=20.88 E-value=60 Score=26.42 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHhcCCCHHHHHHHHHHHhc
Q 001387 1058 LSRTRMDEISKTMNVSVEELCKRVEELTR 1086 (1088)
Q Consensus 1058 l~~~~q~~i~~~~~~~~~~i~~~l~~l~~ 1086 (1088)
-..-.-.++|+.++++...|.++|++|.+
T Consensus 14 ~g~vsv~eLa~~l~VS~~TIRrdL~~Le~ 42 (78)
T 1xn7_A 14 RGRMEAAQISQTLNTPQPMINAMLQQLES 42 (78)
T ss_dssp SCSBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44555678999999999999999999864
No 258
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=20.57 E-value=1.1e+03 Score=27.87 Aligned_cols=103 Identities=21% Similarity=0.282 Sum_probs=55.7
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccccCeEEEEECCEEEEEEeeeccCccccccc
Q 001387 781 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQS 860 (1088)
Q Consensus 781 ~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~g~Lv~~~g~~l~v~~~~~~~~~~~~L~~ 860 (1088)
...|-|||. .| ++.|+....+++.. .......|.+++.-+|.|.++..+.|+.|+. +. .++..
T Consensus 73 ~g~lWigT~----------~G-l~~yd~~~~~f~~~-~~~~~~~i~~i~~~~g~lWigt~~Gl~~~~~--~~---~~~~~ 135 (758)
T 3ott_A 73 NTYLYMGTD----------NG-ILVYNYRADRYEQP-ETDFPTDVRTMALQGDTLWLGALNGLYTYQL--QS---RKLTS 135 (758)
T ss_dssp TTEEEEEET----------TE-EEEEETTTTEECCC-SCCCCSCEEEEEEETTEEEEEETTEEEEEET--TT---CCEEE
T ss_pred CCcEEEEeC----------CC-eEEEeCCCCEEECc-ccCCCceEEEEEecCCcEEEEcCCcceeEeC--CC---CeEEE
Confidence 567888982 24 56665544444320 0112334666665578999998887766653 21 12221
Q ss_pred c----cccccceEEEEEEEe-CCEEEEEeccccEEEEEEeccCCeEEEE
Q 001387 861 E----CGHHGHILALYVQTR-GDFIVVGDLMKSISLLIYKHEEGAIEER 904 (1088)
Q Consensus 861 ~----~~~~~~~~~~~l~~~-~~~I~vgD~~~Sv~~~~~~~~~~~l~~~ 904 (1088)
. .... ...+.++... ++.|++|+. +|+ ++|+...+++...
T Consensus 136 ~~~~~~~l~-~~~i~~i~~d~~g~lWigt~-~Gl--~~~~~~~~~~~~~ 180 (758)
T 3ott_A 136 FDTRRNGLP-NNTIYSIIRTKDNQIYVGTY-NGL--CRYIPSNGKFEGI 180 (758)
T ss_dssp ECHHHHCCS-CSCEEEEEECTTCCEEEEET-TEE--EEEETTTTEEEEE
T ss_pred eccCCCCcC-CCeEEEEEEcCCCCEEEEeC-CCH--hhCccCCCceEEe
Confidence 1 0000 1123444443 567889985 564 5678777776554
No 259
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=20.43 E-value=6.7e+02 Score=25.26 Aligned_cols=202 Identities=10% Similarity=0.014 Sum_probs=93.2
Q ss_pred CccCeEEEecC-CCEEEEEEeecCCCcCcceeEEEEEEeCCCceEEEE-EECCCC---ceEeEEEEEEEcCCCceEEEEE
Q 001387 713 EHPRRICHQEQ-SRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIST-YPLDTF---EYGCSILSCSFSDDSNVYYCVG 787 (1088)
Q Consensus 713 ~tp~~i~y~~~-~~~~~v~~~~~~~~~~~~~~s~l~lid~~t~~~i~~-~~~~~~---E~v~si~~~~~~~~~~~~i~VG 787 (1088)
..|..++++++ .++++ ++.. ..|..+|+. .+.... ...... ..+.++. +..++ . +.|+
T Consensus 71 ~~~~~i~~~~~~g~l~v-~~~~----------~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~---~d~~g-~-l~v~ 133 (314)
T 1pjx_A 71 GIPAGCQCDRDANQLFV-ADMR----------LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCA---FDYEG-N-LWIT 133 (314)
T ss_dssp CCEEEEEECSSSSEEEE-EETT----------TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEE---ECTTS-C-EEEE
T ss_pred CCCceEEEecCCCcEEE-EECC----------CCEEEEeCC-CCEEEEEeccCCCccccCCcCEE---ECCCC-C-EEEE
Confidence 45778888877 44443 3321 257778876 544322 111111 2234433 33333 3 4455
Q ss_pred eeeeC------CCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-----cC-eEEEEE--CCEEEEEEeeeccC
Q 001387 788 TAYVL------PEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-----NG-KLLAAI--NQKIQLYKWMLRDD 853 (1088)
Q Consensus 788 T~~~~------~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-----~g-~Lv~~~--g~~l~v~~~~~~~~ 853 (1088)
+.... ........|+|+.++.. ++++.+.. ..+.+..++-. +| .|+++. ++.|++|+++. +
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~--~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~--~ 208 (314)
T 1pjx_A 134 APAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT--AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG--P 208 (314)
T ss_dssp ECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE--EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE--T
T ss_pred ecCcccccccccccccCCCCeEEEECCC-CCEEEecc--CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCC--C
Confidence 53210 00122345788777654 45544322 12233444433 23 566664 46788877531 2
Q ss_pred cccccc-cccccccc--eEEEEEEEe-CCEEEEEeccccEEEEEEeccCCe-EEEEeccCCCceeEEEEEeeCce-EEEE
Q 001387 854 GTRELQ-SECGHHGH--ILALYVQTR-GDFIVVGDLMKSISLLIYKHEEGA-IEERARDYNANWMSAVEILDDDI-YLGA 927 (1088)
Q Consensus 854 ~~~~L~-~~~~~~~~--~~~~~l~~~-~~~I~vgD~~~Sv~~~~~~~~~~~-l~~~~~D~~~~~v~~~~~l~~~~-~l~~ 927 (1088)
+...-. ....+... ..+..+... +..+++++...+ .+.+|+++..+ +..+. . ...++.++.+-.++. +.++
T Consensus 209 g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~-~i~~~d~~~g~~~~~~~-~-~~~~~~~i~~~~dg~~l~v~ 285 (314)
T 1pjx_A 209 AKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS-HIEVFGPDGGQPKMRIR-C-PFEKPSNLHFKPQTKTIFVT 285 (314)
T ss_dssp TEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT-EEEEECTTCBSCSEEEE-C-SSSCEEEEEECTTSSEEEEE
T ss_pred CccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC-EEEEEcCCCCcEeEEEe-C-CCCCceeEEECCCCCEEEEE
Confidence 211000 01111111 234444443 346788876544 24567766233 22222 1 225566666633343 4444
Q ss_pred -ccCCcEEEEeeC
Q 001387 928 -ENNFNLFTVRKN 939 (1088)
Q Consensus 928 -D~~gnl~~l~~~ 939 (1088)
..++.|..++.+
T Consensus 286 ~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 286 EHENNAVWKFEWQ 298 (314)
T ss_dssp ETTTTEEEEEECS
T ss_pred eCCCCeEEEEeCC
Confidence 456788887754
No 260
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=20.31 E-value=1e+02 Score=33.41 Aligned_cols=54 Identities=9% Similarity=0.135 Sum_probs=28.3
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc-cCeEEEE--ECCEEEEEE
Q 001387 781 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAA--INQKIQLYK 847 (1088)
Q Consensus 781 ~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~-~g~Lv~~--~g~~l~v~~ 847 (1088)
...+++|+ ..|.|+.|+...+++.-.. +. +++.+...+ +|.++++ .+..|+.++
T Consensus 9 ~~~v~~gs----------~dg~v~a~d~~tG~~~W~~--~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d 65 (369)
T 2hz6_A 9 ETLLFVST----------LDGSLHAVSKRTGSIKWTL--KE-DPVLQVPTHVEEPAFLPDPNDGSLYTLG 65 (369)
T ss_dssp TTEEEEEE----------TTSEEEEEETTTCCEEEEE--EC-CCSCCCC-----CCEEECTTTCCEEEC-
T ss_pred CCEEEEEc----------CCCEEEEEECCCCCEEEEe--cC-CCceecceEcCCCEEEEeCCCCEEEEEE
Confidence 35677776 2478888887766544322 33 555554434 5555554 345666544
Done!