Citrus Sinensis ID: 001389

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------109

MMDHKPWLWRKKSSEKTIIATDKLDLSLKGNEAEMQILLTDKAELENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQIEELSKGRKIMEPSRTSIMSYELSLTSMSDIGSDDKVNCAESRASALISESEHLRSGKQREPPFCRTVGASDISLMDDFVEMERLAIVSVNKPDGTSHVSPIRANAIVGPLETESSGHSPATIGEEIFRVPEHQADFGVLNREIKSRDILIGKFPSWLQEILELILEQNHVTNRHPYKILEDVRDALVYIDHQSTHQLVDTRESSNNLHKSNSPHFSSVTDAEISLSEKNQQFHSDLSKSIRKIAELIEKINLTSPEYGLLENLSKKDGSVISYKNTAPSGYMVRVFQWKTSELSDILQQFVHACYGVLNKEADFNKFANDLSIALEWIMNHCFSLQDVSSMKDEIKKHFDWDEVRSESEAEVGMVYQFTEADGLHLPRGQSSCLPTFAVANGHYFSHKKELPSNESEPGSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTKSGIPTDELKQDEKQIQTDWEIATASEKLAECQETILNLGKQLKALASPREAALFDKVIHTPTDTVSTAAAATTTLQKNKMINQRSSLLDQMMAEDNTDCEDLNCPRTKGNDDNYSSVFISSRAIEPSGKILALNGTKHQDDDTVDKLLAIVPSQKRGGGNLWKKLFWRKKKFNSKKMTLPFVT

cccccccccccHHHHccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHccccHHHHcccccccccHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcHHHHHHHHHHcccccccccccccHHHHcccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccHHHccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccc

cccccccccEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHccccccccccccccccccHccHccccccHHHHHHHHHHHHHHHHHHHHccccccHHccccHHHcccccccccccccccccEEEEEEEEccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHccccccccccccccHHcEEcccccHccccccccccccccccccccccccccHHHcccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccHHEEccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccEEEEcccccccccccccEEEEEccccccccHHHHHHHHHccccccccccccccc

mmdhkpwlwrkkssektiiatdkldlslkgNEAEMQILLTDKAELENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEilgrespetrrkrlnssplgsmvdsafdnppdtpskRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQIEELSKGrkimepsrtsIMSYELSLTsmsdigsddkvnCAESRASALISESehlrsgkqreppfcrtvgasdisLMDDFVEMERLAIVsvnkpdgtshvspiranaivgpletessghspatigeeifrvpehqadfgvlnreiksrdiliGKFPSWLQEILELILEQnhvtnrhpykILEDVRDALVYIdhqsthqlvdtressnnlhksnsphfssvtdaeislseknqqFHSDLSKSIRKIAELIEKInltspeygllenlskkdgsvisykntapsgyMVRVFQWKTSELSDILQQFVHACYGVLNKEADFNKFANDLSIALEWIMNHCFslqdvssmKDEIKkhfdwdevrseseAEVGMVYqfteadglhlprgqssclptfavanghyfshkkelpsnesepgsefinveagnkVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESvtksgiptdelkqdEKQIQTDWEIATASEKLAECQETILNLGKQLKAlaspreaalfdkvihtptdtvSTAAAATTTLQKNKMINQRSSLLDQMmaedntdcedlncprtkgnddnyssvfissraiepsgkilalngtkhqdddtVDKLLAIvpsqkrgggnlWKKLFWRKKkfnskkmtlpfvt

mmdhkpwlwrkkssektiiatdkldlslkgnEAEMQILLTDKAELENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQrtqaeadsnaLMVRldstekenaslkyevrvlgkeleirneerefnrrtadeshkqhlesVKKIAKLESECQRLRVLvrkrlpgpaalakmkneveilgrespetrrkrlnssplgsmvdsafdnppdtpsKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQIEElskgrkimepsrTSIMSYELSLTSMSDIGSDDKVNCAESRASALisesehlrsgkqreppfcrTVGASDISLMDDFVEMERLAIVSvnkpdgtshvsPIRANAIVGPLETESSGHSPATIGEEIFRVPEHQADFGVLNREIKSRDILIGKFPSWLQEILELILEQNHVTNRHPYKILEDVRDALVYIDHQSTHQLVDTRESSNNLHKSNSPHFSSVTDAEISLSEKNQQFHSDLSKSIRKIAELIEKInltspeygllENLSKKDGSVISYKNTAPSGYMVRVFQWKTSELSDILQQFVHACYGVLNKEADFNKFANDLSIALEWIMNHCFSLQDVSSMKDEIKKHFDWDEVRSESEAEVGMVYQFTEADGLHLPRGQSSCLPTFAVANGHYFSHKKELPSNESEPGSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTKsgiptdelkqdekQIQTDWEIATASEKLAECQETILNLGKQLKALASPREAALFDKVIHTPTDTVSTAAAatttlqknkmiNQRSSLLDQMMAEDNTDCedlncprtkgnddnYSSVFISSRAIEPSGKILALNGTKHQDDDTVDKLLAivpsqkrgggnlwkklfwrkkkfnskkmtlpfvt

MMDHKPWLWRKKSSEKTIIATDKLDLSLKGNEAEMQILLTDKAELENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKeleirneerefnrrTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQIEELSKGRKIMEPSRTSIMSYELSLTSMSDIGSDDKVNCAESRASALISESEHLRSGKQREPPFCRTVGASDISLMDDFVEMERLAIVSVNKPDGTSHVSPIRANAIVGPLETESSGHSPATIGEEIFRVPEHQADFGVLNREIKSRDILIGKFPSWlqeilelileqNHVTNRHPYKILEDVRDALVYIDHQSTHQLVDTRESSNNLHKSNSPHFSSVTDAEISLSEKNQQFHSDLSKSIRKIAELIEKINLTSPEYGLLENLSKKDGSVISYKNTAPSGYMVRVFQWKTSELSDILQQFVHACYGVLNKEADFNKFANDLSIALEWIMNHCFSLQDVSSMKDEIKKHFDWDEVRSESEAEVGMVYQFTEADGLHLPRGQSSCLPTFAVANGHYFSHKKELPSNESEPGSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNcceeleatclelqlqleSVTKSGIPTDELKQDEKQIQTDWEIATASEKLAECQETILNLGKQLKALASPREAALFDKVIHtptdtvstaaaatttLQKNKMINQRSSLLDQMMAEDNTDCEDLNCPRTKGNDDNYSSVFISSRAIEPSGKILALNGTKHQDDDTVDKLLAIVPSQKRGGGnlwkklfwrkkkfnskkMTLPFVT

*******LW*******TIIATDKLDLSLKG**AEMQILLTDKAELENDVKNLNDKLFSALAECNAK********************************************RLIHLDAALKECMDQLHFVRE*****IH*AV******F*QSLMILEEKL*****RLAKLGVENTHLTKALLAKEKLI**********************************VRV***************************************CQRLRVLVRK*********************************************************************************************************************************************************************FCRTVGASDISLMDDFVEMERLAIVSVN*******************************IGEEIFRVPEHQADFGVLNREIKSRDILIGKFPSWLQEILELILEQNHVTNRHPYKILEDVRDALVYIDHQ***********************************************IRKIAELIEKINLTSPEYGLLENLSKKDGSVISYKNTAPSGYMVRVFQWKTSELSDILQQFVHACYGVLNKEADFNKFANDLSIALEWIMNHCFSLQDVSSMKDEIKKHFDWDEVR***EAEVGMVYQFTEADGLHLPRGQSSCLPTFAVANGHYF*****************************CLV****************************************VKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESV*****************QTDWEIATASEKLAECQETILNLGKQLKALASPREAALFDKVIHTPTDTV***************************************************VFI*********KILALNG******DTVDKLLAIVPSQKRGGGNLWKKLFWRKKKF***********

*MDHKPWLWR************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************W**L*************LP***

MMDHKPWLWRKKSSEKTIIATDKLDLSLKGNEAEMQILLTDKAELENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAIT***********LKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREF**************SVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQIEELSKGRKIMEPSRTSIMSYELSLTSMSDIGSDDKVNCAESRASALI************EPPFCRTVGASDISLMDDFVEMERLAIVSVNKPDGTSHVSPIRANAIVGPLETESSGHSPATIGEEIFRVPEHQADFGVLNREIKSRDILIGKFPSWLQEILELILEQNHVTNRHPYKILEDVRDALVYIDHQSTHQLVDTRESSNNLHKSNSPHFSSVTDAEISLSEKNQQFHSDLSKSIRKIAELIEKINLTSPEYGLLENLSKKDGSVISYKNTAPSGYMVRVFQWKTSELSDILQQFVHACYGVLNKEADFNKFANDLSIALEWIMNHCFSLQDVSSMKDEIKKHFDWDEVRSESEAEVGMVYQFTEADGLHLPRGQSSCLPTFAVANGHYFSHK************EFINVEAGNKVRQECLVSAIDKSNS*************NSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTKSGIPTDELKQDEKQIQTDWEIATASEKLAECQETILNLGKQLKALASPREAALFDKVIHTPTDTVSTAAAATTTLQKNKMINQRSSLLDQMMAEDNTDCEDLNCPRTKGNDDNYSSVFISSRAIEPSGKILALNGTKHQDDDTVDKLLAIVPSQKRGGGNLWKKLFWRKKKFNSKKMTLPFVT

*****P*******************************LLTDKAELENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEV*I********************************PSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQIEELS*********************************************SEHLRSGKQ************DISLMDDFVEMERLAIVS****************************************************REIKSRDILIGKFPSWLQEILELILEQNHVTNRHPYKILEDVRDALVYIDHQSTHQLV*********************DA****SEKNQQFHSDLSKSIRKIAELIEKINLTSP*YG*********GSVISYKNTAPSGYMVRVFQWKTSELSDILQQFVHACYGVLNKEADFNKFANDLSIALEWIMNHCFSLQDVSSMKDEIKKHFDWDEVRSESEAEVGM*YQFTEADGLHLPRGQSSCLPTFAVANGHYFSHKKELPSNESEPGSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTKS************QIQTDWEIATASEKLAECQETILNLGKQLKALASPREAALFDKVIHT*******************************************************SVFISSRAIEPSGKILALNGTKHQDDDTVDKLLAIVPSQKRGGGNLWKKLFWRK**************

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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MMDHKPWLWRKKSSEKTIIATDKLDLSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCNAKDDLVKKHAKMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSxxxxxxxxxxxxxxxxxxxxxNTHLTKALLAKEKLIEDLGKQxxxxxxxxxxxxxxxxxxxxxNASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPSKRxxxxxxxxxxxxxxxxxxxxxxxxxxxxLQFSRTMxxxxxxxxxxxxxxxxxxxxxRKIMEPSRTSIMSYELSLTSMSDIGSDDKVNCAESRASALISESEHLRSGKQREPPFCRTVGASDISLMDDFVEMERLAIVSVNKPDGTSHVSPIRANAIVGPLETESSGHSPATIGEEIFRVPEHQADFGVLNREIKSRDILIGKFPSWLQEILELILEQNHVTNRHPYKILEDVRDALVYIDHQSTHQLVDTRESSNNLHKSNSPHFSSVTDAEISLSEKNQQFHSDLSKSIRKIAELIEKINLTSPEYGLLENLSKKDGSVISYKNTAPSGYMVRVFQWKTSELSDILQQFVHACYGVLNKEADFNKFANDLSIALEWIMNHCFSLQDVSSMKDEIKKHFDWDEVRSESEAEVGMVYQFTEADGLHLPRGQSSCLPTFAVANGHYFSHKKELPSNESEPGSEFINVEAGNKVRQECLVSAIDKSNSLMSQxxxxxxxxxxxxxxxxxxxxxxxxxxxxVKLQKMINEDLDTQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGIPTDELKQDEKQIQTDWEIATASEKLAECQETILNLGKQLKALASPREAALFDKVIHTPTDTVSTAAAATTTLQKNKMINQRSSLLDQMMAEDNTDCEDLNCPRTKGNDDNYSSVFISSRAIEPSGKILALNGTKHQDDDTVDKLLAIVPSQKRGGGNLWKKLFWRKKKFNSKKMTLPFVT

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1088	2.2.26 [Sep-21-2011]
Q9SLN1		898	Filament-like plant prote	yes	no	0.814	0.986	0.400	1e-175
Q0WSY2		982	Filament-like plant prote	no	no	0.422	0.468	0.4	4e-78
Q9C698		1054	Filament-like plant prote	no	no	0.386	0.399	0.395	3e-68
O65649		996	Filament-like plant prote	no	no	0.424	0.463	0.361	3e-64
Q9CAP9		779	Filament-like plant prote	no	no	0.181	0.254	0.403	5e-35
Q9MA92		615	Filament-like plant prote	no	no	0.225	0.398	0.356	3e-33
Q8LLE5		582	Filament-like plant prote	N/A	no	0.170	0.319	0.448	2e-32
Q9SFF4		629	Filament-like plant prote	no	no	0.153	0.265	0.368	2e-22

>sp\|Q9SLN1\|FPP7_ARATH Filament-like plant protein 7 OS=Arabidopsis thaliana GN=FPP7 PE=3 SV=2	Back alignment and function desciption

 Score =  617 bits (1591), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 439/1097 (40%), Positives = 614/1097 (55%), Gaps = 211/1097 (19%)

Query: 2    MDHKPWLWRKKSSEKTIIATDKLDLSLKGNEAEMQILLTDKAELENDVKNLNDKLFSALA 61
            MDHK W W+KKS EKT++ ++       G       ++ DK ELE+ VK+LNDKL S  A
Sbjct: 1    MDHKAWPWKKKSMEKTVVESN-------GE------VVADKIELEHRVKSLNDKLNSVEA 47

Query: 62   ECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKE 121
            E N       KH   AQEAI G EK +AEV SLK++LD AL ++   EER  H DA LKE
Sbjct: 48   ESN-------KHETEAQEAIVGWEKTKAEVASLKKKLDEALNEKHRSEERSSHTDAGLKE 100

Query: 122  CMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALL 181
            C+ QL FVREEQE+R+HDA+ KAS E+E+ L++++ +LA + KRLA+   EN  L+KALL
Sbjct: 101  CVQQLRFVREEQERRMHDALTKASQEYERRLIVIKTELAGSGKRLAEAEGENAQLSKALL 160

Query: 182  AKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRR 241
            AK K +EDL ++R + E D N+L+  L+S EKEN SL+YEVRVL KELE+RNEEREF+RR
Sbjct: 161  AKNKTVEDLNRERDRIEVDFNSLVSSLESKEKENVSLRYEVRVLEKELELRNEEREFSRR 220

Query: 242  TADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRESPETRRK 301
            TA+ SHK HLE+VKK+AKLESECQRLRVLVRKRLPGPAAL+KM NEVE+LGR       +
Sbjct: 221  TAEASHKLHLENVKKVAKLESECQRLRVLVRKRLPGPAALSKMSNEVEMLGR-------R 273

Query: 302  RLNSSPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTM 361
            R+N SP   M+DS          ++IN LTEQL  +EEEN +L+E L+KK +ELQFSR M
Sbjct: 274  RVNGSPHSPMIDS----------EKINNLTEQLCLLEEENKTLREALNKKVSELQFSRNM 323

Query: 362  YARAASKLSEVESQIEELSKGRKIMEPSRTSIMSYELSLTSMSDIGSDDKVNCAESRASA 421
            Y+R AS+L E ES +EE S+G  I EPSR+S +S+E+SL S+++  +DDKV+CA+S ASA
Sbjct: 324  YSRTASRLLEFESHLEESSRGTNI-EPSRSSNVSHEVSLASVTEFDNDDKVSCADSWASA 382

Query: 422  LISESEHLRSGKQREPPFCRTVGASDISLMDDFVEMERLAIVSV---NKPDGTSHVSPIR 478
            L+SE ++ ++ K+       T  A+++ LMDDF EME+LA+V+    N+P G+S +    
Sbjct: 383  LLSELDNFKNKKEMGTSLVGTPKAAEMKLMDDFAEMEKLAMVASTIDNRP-GSSPICSSD 441

Query: 479  ANAIVGPLETESSGHSPATIGEEIFRVPEHQADFGVLNREIKSRD-ILIGKFPSWLQEIL 537
            + +  GP+E ES+ +S            +       LN +   +D I     P  L  +L
Sbjct: 442  SISATGPVENESNENSSEAT--------KTSGTVYSLNPDASPKDDIKSDSLPQSLHIVL 493

Query: 538  ELILEQNHVTNRHPYKILEDVRDALVYIDHQSTHQLVDTRESSNNLHKSNSPHFSSVTDA 597
            + ++E  H+T R+  ++LED+R AL  ++H S          S N  ++ +       D 
Sbjct: 494  KAVMEHKHITQRNTDEVLEDIRKALSSVNHSSF---------STNHQETKTLTVEDRLDM 544

Query: 598  EISLSEKNQQFHSDLSKSIRKIAELIEKINLTSPEYGLLENLSKKDGSVISYKNTAPSGY 657
            E            ++SKSI +I ++IE ++L            K +  V + ++   SGY
Sbjct: 545  EC-----------NISKSIHRIIDVIEGVSL------------KDERHVSNRESERLSGY 581

Query: 658  MVRVFQWKTSELSDILQQFVHACYGVLNKEADFNKFANDLSIALEWIMNHCFSLQDVSSM 717
              RV QWKT+ELS +LQ+F+ ACY +L+++AD  KFA +LS  LEW++NHCFSLQDVS+M
Sbjct: 582  TARVLQWKTTELSSVLQRFLQACYDLLDRKADMKKFAQELSSVLEWMVNHCFSLQDVSTM 641

Query: 718  KDEIKKHFDWDEVRSESEAEVGMVYQFTEADGLHLPRGQSSCLPTFAVANGHYFSHKKEL 777
            +         DE+                                           KK+ 
Sbjct: 642  R---------DEI-------------------------------------------KKQF 649

Query: 778  PSNESEPGSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSK 837
              +ES  GSE   V+ G                 +  Q+ E++K+ +    ++  L    
Sbjct: 650  EWDESRSGSE---VDIG-----------------IFRQVSEAEKLRTE---DVSFLACKD 686

Query: 838  EVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQ 897
            ++IED     K  N++L    K    + N+     S  E++LE+K N             
Sbjct: 687  QLIED-----KPGNQNLSR--KTVEEEANDKTASASENELKLEEKQNM------------ 727

Query: 898  LQLESVTKSGIPTDELKQDEKQIQTDWEIATASEKLAECQETILNLGKQLKALASPREAA 957
                                   +T+ EIA ASEKLAECQETILNLGKQLKAL + +E A
Sbjct: 728  -----------------------RTELEIAAASEKLAECQETILNLGKQLKALTNSKETA 764

Query: 958  LF-DKVIHTPTDTVSTAAAAT----TTLQKNKMINQRSSLLDQMMAED-NTDCEDLNCPR 1011
            L  + +++  TD  +    A     TT  + ++ +QRSSLLDQM AED NT       P+
Sbjct: 765  LLSETLMYDVTDKSNNLPDAQPSHETTKPEKRLTSQRSSLLDQMKAEDHNTGESKDQKPQ 824

Query: 1012 TKGNDDNYSSVFISSRAIEPSGKILALNGTKHQDDDTVDKLLAIVPSQKRGG-GNLWKKL 1070
                +    +  + +  IE   +IL  + +K  D +      AIVP +K GG  +LW+KL
Sbjct: 825  AADKNGKGGNSSVYNETIEALEQILLSDKSKGSDSNC----FAIVPQKKTGGVKSLWRKL 880

Query: 1071 FWRKKKFNSKKMTLPFV 1087
              R KK  SKK+  PF 
Sbjct: 881  LGRNKKGKSKKVPNPFA 897

Arabidopsis thaliana (taxid: 3702)

>sp\|Q0WSY2\|FPP4_ARATH Filament-like plant protein 4 OS=Arabidopsis thaliana GN=FPP4 PE=2 SV=1	Back alignment and function description

>sp\|Q9C698\|FPP6_ARATH Filament-like plant protein 6 OS=Arabidopsis thaliana GN=FPP6 PE=2 SV=1	Back alignment and function description

>sp\|O65649\|FPP5_ARATH Filament-like plant protein 5 OS=Arabidopsis thaliana GN=FPP5 PE=2 SV=2	Back alignment and function description

>sp\|Q9CAP9\|FPP1_ARATH Filament-like plant protein 1 OS=Arabidopsis thaliana GN=FPP1 PE=2 SV=1	Back alignment and function description

>sp\|Q9MA92\|FPP3_ARATH Filament-like plant protein 3 OS=Arabidopsis thaliana GN=FPP3 PE=2 SV=2	Back alignment and function description

>sp\|Q8LLE5\|FPP_SOLLC Filament-like plant protein (Fragment) OS=Solanum lycopersicum GN=FPP PE=1 SV=1	Back alignment and function description

>sp\|Q9SFF4\|FPP2_ARATH Filament-like plant protein 2 OS=Arabidopsis thaliana GN=FPP2 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1088
147791289		1124	hypothetical protein VITISV_042269 [Viti	0.993	0.961	0.598	0.0
359480795		1111	PREDICTED: filament-like plant protein 7	0.981	0.961	0.594	0.0
255565282		1132	Myosin-9, putative [Ricinus communis] gi	0.978	0.940	0.577	0.0
224084366		947	predicted protein [Populus trichocarpa]	0.842	0.968	0.575	0.0
356563606		1096	PREDICTED: filament-like plant protein 7	0.969	0.962	0.534	0.0
356514210		1097	PREDICTED: filament-like plant protein 7	0.978	0.970	0.524	0.0
356540668		1075	PREDICTED: filament-like plant protein 7	0.958	0.970	0.518	0.0
356496915		1078	PREDICTED: filament-like plant protein 7	0.964	0.973	0.510	0.0
449463945		1088	PREDICTED: filament-like plant protein 7	0.970	0.970	0.517	0.0
449508275		1088	PREDICTED: filament-like plant protein 7	0.970	0.970	0.517	0.0

>gi\|147791289\|emb\|CAN65607.1\| hypothetical protein VITISV_042269 [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1221 bits (3159), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 671/1122 (59%), Positives = 818/1122 (72%), Gaps = 41/1122 (3%)

Query: 2    MDHKPWLWRKKSSEKTIIATDKLDLSLKGNEAEMQILLTDKAELENDVKNLNDKLFSALA 61
            MD K WLWRKKS+EK I+A DK+++ LKGNE E+Q LL DKAELE D+K+LNDKL SA++
Sbjct: 1    MDQKTWLWRKKSTEKNIVAADKVNVPLKGNEEEIQTLLADKAELERDLKSLNDKLSSAVS 60

Query: 62   ECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKE 121
            E N KDDLVKKHAK AQEAITG E+A+AEVV+LKQELD AL+QR  GEERL HLDAALKE
Sbjct: 61   EHNVKDDLVKKHAKTAQEAITGWERAKAEVVTLKQELDEALRQRVAGEERLTHLDAALKE 120

Query: 122  CMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALL 181
            CM QL FVREEQEQRIHDAVMK + EFE++ M+LEEKLAETSKRLAKLG ENTHL+KALL
Sbjct: 121  CMQQLRFVREEQEQRIHDAVMKTAREFEKTQMVLEEKLAETSKRLAKLGAENTHLSKALL 180

Query: 182  AKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRR 241
            AKEKLI DL   R Q EAD NALM RLDSTEK++ASLKYEVRVL KELEIRNEEREFNRR
Sbjct: 181  AKEKLIGDLSDHRKQTEADFNALMTRLDSTEKDHASLKYEVRVLEKELEIRNEEREFNRR 240

Query: 242  TADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRESPETRRK 301
            TAD SHKQHLESVKKIAKLESECQRLR+LVRKRLPGPAALAKMKNEVE+LGR+  E RR+
Sbjct: 241  TADASHKQHLESVKKIAKLESECQRLRLLVRKRLPGPAALAKMKNEVEMLGRDPSEMRRR 300

Query: 302  RLNSSPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTM 361
            + +SSP G MVDS   N  DTPSK  NFLTEQL +MEEEN +LKE L KKTNELQFSR M
Sbjct: 301  KSSSSPTGLMVDSVAYNSLDTPSKSTNFLTEQLCSMEEENKTLKEALVKKTNELQFSRIM 360

Query: 362  YARAASKLSEVESQIEELSKGRKIMEPSRTSIMSYELSLTSMSDIGSDDKVNCAESRASA 421
            YAR  SKLS+ E Q+EE   G  ++EP+RTS  S++LSL SMSD+GSDDKV+CAES AS+
Sbjct: 361  YARTTSKLSQDEVQLEESPXGHVLLEPTRTSXASHDLSLASMSDVGSDDKVSCAESWASS 420

Query: 422  LISESEHLRSGKQREPPFCRTVGASDISLMDDFVEMERLAIVSVNKPDGTSHVSPIRANA 481
            LISE EH ++GK    P  +TV  SDI+LMDDFVEME+LAIVSVNKP G  H S   A+ 
Sbjct: 421  LISELEHFKNGKXNXTPSRKTVRVSDINLMDDFVEMEKLAIVSVNKPLGNLHPSSQEADT 480

Query: 482  IVGPLETESSGHSPATIGEEIFRVPEHQADFGVLNREIKSRDILIGKFPSWLQEILELIL 541
             +G ++ ES+  S  + G EI  V   Q+ F   N+EI+S +ILIGK P WLQ+IL++IL
Sbjct: 481  AIGTMDKESA--SSESKGREIVPVSGSQSAFSFSNQEIQSENILIGKVPGWLQDILKVIL 538

Query: 542  EQNHVTNRHPYKILEDVRDALVYIDHQSTHQLVDTRESSNN-----------LHKSNSPH 590
            EQ HV+ R+P +I+ED+R A+ +I+H +T    D R+S+++              S +P+
Sbjct: 539  EQIHVSQRNPDEIIEDIRVAMAHINHLNTGDFFDARKSADHPDGSILPPPSGYISSKTPN 598

Query: 591  FSS-------VTDAEISLSE-KNQQFHSDLSKSIRKIAELIEKINLTSPEYGLLENLSKK 642
             SS       VT  + S SE  NQ+  SDLSKSI K+ ELIE I+L S +Y   E  S+K
Sbjct: 599  VSSVMXSSDRVTGVDNSSSETSNQKLQSDLSKSICKMVELIEGISLPSLDYDTQETFSRK 658

Query: 643  DGSVISYKNT-APSGYMVRVFQWKTSELSDILQQFVHACYGVLNKEADFNKFANDLSIAL 701
            DGS   +KN+  P+GY+VRVFQWKTSEL  +L QFVH+C  +LN +AD  KFA +L+ AL
Sbjct: 659  DGSFFPHKNSETPTGYVVRVFQWKTSELRSVLNQFVHSCDDLLNGKADLEKFARELTSAL 718

Query: 702  EWIMNHCFSLQDVSSMKDEIKKHFDWDEVRSESEAEVGMVYQFTEADGLHLPRGQSSCLP 761
            +WIMNHCFSLQDVSSMKD IKK FDWDE RSE+E E+G   QF+E + L LPR   SCLP
Sbjct: 719  DWIMNHCFSLQDVSSMKDAIKKQFDWDESRSENEVEIGTSSQFSEVNNLCLPREHLSCLP 778

Query: 762  TFAVANGHY-FSHKKELPSNESEPGS----EFINVEAGNKVRQECLVSAIDKSNSLMSQL 816
                 N H  F   +E+ SN  E       E +++ +G K        AID+S SLM QL
Sbjct: 779  AGRAPNSHNDFFQTEEVLSNXREENQRLKDELMDMXSGKKNLGRRFRPAIDQSZSLMVQL 838

Query: 817  QESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLE 876
            QES+K +++ + EL++LK+S  +IEDQ +  K +NEDLDTQL V+R +LNEA QKLSSLE
Sbjct: 839  QESEKTIASLKKELEMLKESXRMIEDQSEHHKFMNEDLDTQLTVSRAELNEALQKLSSLE 898

Query: 877  VELEDKSNCCEELEATCLELQLQLESVTKSGIPTDELKQDEKQIQTDWEIATASEKLAEC 936
            VELE ++NCCE+LEATCLELQLQL+ +TK   P  ++ Q+E Q++TDWEI  ASEKLAEC
Sbjct: 899  VELESRNNCCEDLEATCLELQLQLDRITKKETPNHDMDQEENQLRTDWEITAASEKLAEC 958

Query: 937  QETILNLGKQLKALASPREAALFDKVIHTPTD-TVSTAAAATTTLQKNKMINQRSSLLDQ 995
            QETILNLGKQLKALASP EA+J D VI TP+D   +TA   TT++  NK ++ RSSLLD+
Sbjct: 959  QETILNLGKQLKALASPIEASJVDNVISTPSDTITTTATVTTTSIATNKNMSXRSSLLDR 1018

Query: 996  MMAEDNTDCEDLNCPRTKGNDD-------------NYSSVFISSRAIEPSGKILALNGTK 1042
            M+AED+ + +D   P+TK ++              N    F  +  +E   K ++LNG K
Sbjct: 1019 MLAEDDAETKDPKSPKTKESNRTLDPQKSPTRLHANTKPTFSPNGTLELPKKFVSLNGIK 1078

Query: 1043 HQDDDTVDKLLAIVPSQKRGGGNLWKKLFWRKKKFNSKKMTL 1084
               DDT    LAI+PS+K   G L +KL W +KK NSKKM L
Sbjct: 1079 SDADDTAVGSLAILPSKKWSSGGLLRKLLWGRKKGNSKKMAL 1120

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359480795\|ref\|XP_002278328.2\| PREDICTED: filament-like plant protein 7-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255565282\|ref\|XP_002523633.1\| Myosin-9, putative [Ricinus communis] gi\|223537195\|gb\|EEF38828.1\| Myosin-9, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224084366\|ref\|XP_002307274.1\| predicted protein [Populus trichocarpa] gi\|222856723\|gb\|EEE94270.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356563606\|ref\|XP_003550052.1\| PREDICTED: filament-like plant protein 7-like [Glycine max]	Back alignment and taxonomy information

>gi\|356514210\|ref\|XP_003525799.1\| PREDICTED: filament-like plant protein 7-like [Glycine max]	Back alignment and taxonomy information

>gi\|356540668\|ref\|XP_003538808.1\| PREDICTED: filament-like plant protein 7-like [Glycine max]	Back alignment and taxonomy information

>gi\|356496915\|ref\|XP_003517310.1\| PREDICTED: filament-like plant protein 7-like [Glycine max]	Back alignment and taxonomy information

>gi\|449463945\|ref\|XP_004149690.1\| PREDICTED: filament-like plant protein 7-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449508275\|ref\|XP_004163270.1\| PREDICTED: filament-like plant protein 7-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1088
TAIR\|locus:2824556		982	AT1G19835 "AT1G19835" [Arabido	0.415	0.460	0.383	3e-83
TAIR\|locus:2204990		1054	AT1G47900 "AT1G47900" [Arabido	0.387	0.400	0.376	1.6e-82
TAIR\|locus:2135154		996	AT4G36120 "AT4G36120" [Arabido	0.528	0.577	0.317	8.7e-67
TAIR\|locus:2090684		704	AT3G19370 [Arabidopsis thalian	0.275	0.426	0.312	6.8e-45
TAIR\|locus:2204755		779	AT1G77580 [Arabidopsis thalian	0.318	0.445	0.324	1.9e-29
UNIPROTKB\|F1MYM9		1973	MYH11 "Uncharacterized protein	0.378	0.208	0.210	6.3e-11
MGI\|MGI:102643		1972	Myh11 "myosin, heavy polypepti	0.341	0.188	0.218	7.6e-11
UNIPROTKB\|E9PTI3		1973	Myh11 "Myosin-11" [Rattus norv	0.330	0.182	0.247	7.8e-11
POMBASE\|SPCC162.08c		1837	nup211 "nucleoporin nup211" [S	0.379	0.224	0.214	8.2e-11
UNIPROTKB\|E9PTU4		1939	Myh11 "Myosin-11" [Rattus norv	0.330	0.185	0.247	1.5e-10

TAIR\|locus:2824556 AT1G19835 "AT1G19835" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 707 (253.9 bits), Expect = 3.0e-83, Sum P(2) = 3.0e-83
 Identities = 183/477 (38%), Positives = 279/477 (58%)

Query:    27 SLKGNEAEMQILLTDKAELENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREK 86
             +L G + E++       +LE+ +K+L+ KL +A A+  AK+ LVK+H+K+A+EA+TG EK
Sbjct:    43 NLNGLKDEVKSYEEKVTKLEDQIKDLDLKLSTANADIVAKEVLVKQHSKVAEEAVTGWEK 102

Query:    87 AEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASM 146
             AEAE  +LK  L+     + T E+R  HLD ALKECM Q+  ++EE EQ++HD +   + 
Sbjct:   103 AEAEASALKTHLETITLAKLTVEDRAAHLDGALKECMRQIRSLKEENEQKLHDVIATKTN 162

Query:   147 EFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMV 206
             + +      E ++ E  + L + G EN  L+++L  +  ++  + ++++QAE++   L  
Sbjct:   163 QMDNLRAEFESRIGEYEEELLRCGAENDALSRSLQERSNMLMRISEEKSQAESEIEHLKN 222

Query:   207 RLDSTEKENASLKYEVRVLGKXXXXXXXXXXXXXXTADESHKQHLESVKKIAKLESECQR 266
              ++S E+E  +LKYE  V+ K              +A+ ++KQHLE VKKIAKLE+ECQR
Sbjct:   223 NIESCEREINTLKYETHVITKELEIRNEEKNMSMRSAEAANKQHLEGVKKIAKLEAECQR 282

Query:   267 LRVLVRKRLPGPAALAKMKNEVEILG----RESPETRRKRLN-SSPLGSMVD-----SAF 316
             LR LVRK+LPGPAALA+MK EVE LG    R+    RR  +  SSPL S +      S F
Sbjct:   283 LRTLVRKKLPGPAALAQMKMEVESLGFGDHRQDHRQRRSPVRPSSPLMSPMSHMSQVSEF 342

Query:   317 --DNPPDTPSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVES 374
               DN      K  + LTE+L AMEEE   LKE L K+ +ELQ SR + A+ A++L  +E+
Sbjct:   343 SLDNMQKF-HKENDLLTERLLAMEEETKMLKEALAKRNSELQVSRNLCAKTANRLQTLEA 401

Query:   375 QIEELSKGRKIME-P----SRTSIMSYELSLTSMSDIGSDDKVNCAESRASALISESEHL 429
             Q+   S  ++  E P    SR +  S   S+ SMS+ G++D    A S A +L+SE    
Sbjct:   402 QMMSKSPTKRGFEMPAEIFSRQNA-SNPPSMASMSEDGNED----ARSVAGSLMSELSQS 456

Query:   430 RSGKQREPPFCRTVGASDISLMDDFVEMERLAIV-SVNKPDGTSHVSPIRANAIVGP 485
                K       +T  A+ + LMDDF+EME+LA + + +  +G++  S   ++A + P
Sbjct:   457 NKDKANAK-IKKTESANQLELMDDFLEMEKLACLPNGSNANGSTDHSSADSDAEIPP 512

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR\|locus:2204990 AT1G47900 "AT1G47900" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2135154 AT4G36120 "AT4G36120" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2090684 AT3G19370 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2204755 AT1G77580 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MYM9 MYH11 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

MGI\|MGI:102643 Myh11 "myosin, heavy polypeptide 11, smooth muscle" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PTI3 Myh11 "Myosin-11" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

POMBASE\|SPCC162.08c nup211 "nucleoporin nup211" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PTU4 Myh11 "Myosin-11" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SLN1	FPP7_ARATH	No assigned EC number	0.4001	0.8143	0.9866	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1088
pfam05911		767	pfam05911, DUF869, Plant protein of unknown functi	1e-170
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-11
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-09
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-09
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-07
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-07
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-06
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-06
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-06
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-06
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-06
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-06
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-05
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-05
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-05
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-05
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-04
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	9e-04
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002

>gnl\|CDD\|218806 pfam05911, DUF869, Plant protein of unknown function (DUF869)	Back alignment and domain information

 Score =  518 bits (1335), Expect = e-170
 Identities = 320/895 (35%), Positives = 461/895 (51%), Gaps = 128/895 (14%)

Query: 66  KDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQ 125
           K+ LVK+HAK+A+EA++G EKAEAE  +LKQ+L+    ++   E+R  HLD ALKECM Q
Sbjct: 1   KEALVKQHAKVAEEAVSGWEKAEAEAAALKQQLEDVTLKKLAAEDRASHLDGALKECMRQ 60

Query: 126 LHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEK 185
           L  VREEQEQ+I DA  + + E+E+    LE+KL E  K LA+   EN  L+++L  K K
Sbjct: 61  LRQVREEQEQKIQDAATEKTKEWEKVKAELEKKLLELQKELARAAAENDALSRSLQEKSK 120

Query: 186 LIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADE 245
           +I +L +++++AE++   L  RL+S EKEN+SLKYEV VL KELEIRNEER  + ++AD 
Sbjct: 121 MIMELSEEKSRAESEIEDLKARLESAEKENSSLKYEVHVLSKELEIRNEERNMSLQSADA 180

Query: 246 SHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRESPETRRKRLNS 305
           + KQHLE VKKIAKLE+ECQRLR LVRKRLPGPAALAKMK EVE LG    + R +R + 
Sbjct: 181 ASKQHLEGVKKIAKLEAECQRLRGLVRKRLPGPAALAKMKLEVESLGSNFVDNRSRR-SP 239

Query: 306 SPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARA 365
           SP  S   S+  N      K   FLT +L AME+EN +LKE L K+ +ELQFSR MYA+ 
Sbjct: 240 SPASSAFHSSPQNLQKA-QKENEFLTARLLAMEDENKTLKEALSKRNSELQFSRNMYAKT 298

Query: 366 ASKLSEVESQIEELSKGRKIMEPSRTSIMSYELSLTSMSDIGSDDKVNCAESRASALISE 425
           ASKLS +E+Q+E  S      E S +S  S   SLTS+S+ G+DD+ +C+ES ASALISE
Sbjct: 299 ASKLSVLEAQLE--SNRDVSTELSSSSNTSNPPSLTSVSEDGNDDEGSCSESWASALISE 356

Query: 426 SEHLRSGKQREPPFCRTVGASDISLMDDFVEMERLAIVSVNKPDGTSHVSPIRANAIVGP 485
            E  +  K        T  +S++ LMDDF+EME+LA++        S VS          
Sbjct: 357 LEQFKKEKGMGKSSKGTASSSEMELMDDFLEMEKLAMLPPESSADGSKVS---------- 406

Query: 486 LETESSGHSPATIGEEIFRVPEHQADFGVLNREIKSRDILIGKFPSWLQEILELILEQNH 545
             +     S   +   +      +               L  + P  LQ +L+L++E++ 
Sbjct: 407 --SPKCSDSSVALTGPVEHEDNLE-------------SKLSDRLPEVLQSVLKLVMEKHI 451

Query: 546 VTNRHPYKILEDVRDALVYIDHQSTHQLVDTRESSNNLHKSNSPHFSSVTDAEISLSEKN 605
           ++     +ILED+   L                                       S + 
Sbjct: 452 ISEIS--EILEDIEAEL--------------------------------------DSLER 471

Query: 606 QQFHSDLSKSIRKIAELIEKINLTSPEYGLLENLSKKDGSVISYKNTAPSGYMVRVFQWK 665
                D ++ +  +  L+E+ +        LE                           +
Sbjct: 472 SSNGDDENEEVAMVGSLVEESSAVIERSQELEGAVS-----------------------R 508

Query: 666 TSELSDILQQFVHACYGVLNKEADFNKFANDLSIALEWIMNHCFSLQDVSSMKDEIKKHF 725
            SE + +L+  V  C  +L+ +AD  KF  + S+ LEW++N   SLQDVS    EIKK+F
Sbjct: 509 ISEFTSVLEHEVTVCQDLLDGKADLEKFIQEFSLTLEWVVNQEKSLQDVSVEASEIKKNF 568

Query: 726 DWDEVRSESEAEVGMVYQFTEADGLHLPRGQSSCLPTFAVANGHYFSHKKELPSNESEPG 785
                   SE E+    +   A  +                                   
Sbjct: 569 LGL---KSSEKEINSPDEVKGAVCISTL-------------------------------- 593

Query: 786 SEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVK 845
            E   +++  +     L    D      ++LQE++K +   ++ELD  ++S  + E Q+K
Sbjct: 594 EELETLKSEKENLDGELSKCKDDLEESKNKLQETEKKLEELKSELDASQESNSLAETQLK 653

Query: 846 LQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTK 905
                 E L+ + K    +     +K+SSLE ELE +    +EL A C EL+ ++E   +
Sbjct: 654 CMVESYESLELRAKDLEAEHKSLQEKISSLEDELEKERQNHQELIAKCRELEEKIERAEQ 713

Query: 906 SGIPTDELKQDEKQIQTDWEIATASEKLAECQETILNLGKQLKALASPREAALFD 960
                 +L ++E++I+ + EIA A+EKLAECQETIL+LGKQL++LA P E  L  
Sbjct: 714 EE-NMQKLDEEEQKIKQEKEIAAAAEKLAECQETILSLGKQLQSLAPPEEFLLDS 767

This family consists of a number of sequences found in Arabidopsis thaliana, Oryza sativa and Lycopersicon esculentum (Tomato). The function of this family is unknown. Length = 767

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1088
PF05911		769	DUF869: Plant protein of unknown function (DUF869)	100.0
KOG0996		1293	consensus Structural maintenance of chromosome pro	99.47
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	99.31
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	99.22
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	99.16
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	99.05
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	98.79
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	98.69
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	98.46
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	98.36
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	98.36
PRK02224		880	chromosome segregation protein; Provisional	98.17
PF05911		769	DUF869: Plant protein of unknown function (DUF869)	98.14
PRK03918		880	chromosome segregation protein; Provisional	97.95
PRK02224		880	chromosome segregation protein; Provisional	97.89
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	97.89
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	97.76
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.5
PRK04778		569	septation ring formation regulator EzrA; Provision	97.45
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	97.3
KOG0933		1174	consensus Structural maintenance of chromosome pro	97.27
KOG4673		961	consensus Transcription factor TMF, TATA element m	97.26
PF09755		310	DUF2046: Uncharacterized conserved protein H4 (DUF	97.24
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	97.2
PRK11637		428	AmiB activator; Provisional	97.19
PRK04863		1486	mukB cell division protein MukB; Provisional	97.12
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	97.04
PF00038		312	Filament: Intermediate filament protein; InterPro:	97.04
PRK04863		1486	mukB cell division protein MukB; Provisional	96.97
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	96.92
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	96.87
KOG0933		1174	consensus Structural maintenance of chromosome pro	96.85
PRK11637		428	AmiB activator; Provisional	96.82
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	96.82
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.76
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	96.69
KOG4673		961	consensus Transcription factor TMF, TATA element m	96.56
PF14662		193	CCDC155: Coiled-coil region of CCDC155	96.45
KOG0996		1293	consensus Structural maintenance of chromosome pro	96.4
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	96.38
PRK09039		343	hypothetical protein; Validated	96.37
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	96.28
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	96.26
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	96.24
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.21
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.17
PF10473		140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.12
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	96.09
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	96.06
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.04
PRK03918		880	chromosome segregation protein; Provisional	96.0
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	95.99
KOG0971		1243	consensus Microtubule-associated protein dynactin	95.97
PHA02562		562	46 endonuclease subunit; Provisional	95.96
KOG0964		1200	consensus Structural maintenance of chromosome pro	95.95
KOG0976		1265	consensus Rho/Rac1-interacting serine/threonine ki	95.87
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	95.83
PF15254		861	CCDC14: Coiled-coil domain-containing protein 14	95.8
KOG0963		629	consensus Transcription factor/CCAAT displacement	95.79
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	95.73
KOG1003		205	consensus Actin filament-coating protein tropomyos	95.73
KOG0971		1243	consensus Microtubule-associated protein dynactin	95.71
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	95.54
COG4942		420	Membrane-bound metallopeptidase [Cell division and	95.46
KOG0980		980	consensus Actin-binding protein SLA2/Huntingtin-in	95.46
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	95.32
PF06160		560	EzrA: Septation ring formation regulator, EzrA ; I	95.18
COG3883		265	Uncharacterized protein conserved in bacteria [Fun	95.13
PF10473		140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	95.11
PF05557		722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	95.05
PF15619		194	Lebercilin: Ciliary protein causing Leber congenit	95.05
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	95.01
PHA02562		562	46 endonuclease subunit; Provisional	95.01
PF08614		194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	94.99
PRK09039		343	hypothetical protein; Validated	94.98
PF15619		194	Lebercilin: Ciliary protein causing Leber congenit	94.96
PF14915		305	CCDC144C: CCDC144C protein coiled-coil region	94.96
COG1340		294	Uncharacterized archaeal coiled-coil protein [Func	94.87
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	94.8
PF04156		191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	94.77
PRK01156		895	chromosome segregation protein; Provisional	94.6
PF04849		306	HAP1_N: HAP1 N-terminal conserved region; InterPro	94.59
PF09728		309	Taxilin: Myosin-like coiled-coil protein; InterPro	94.54
TIGR01843		423	type_I_hlyD type I secretion membrane fusion prote	94.34
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	94.34
KOG0995		581	consensus Centromere-associated protein HEC1 [Cell	94.23
PF04849		306	HAP1_N: HAP1 N-terminal conserved region; InterPro	94.21
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	94.2
PRK11281		1113	hypothetical protein; Provisional	94.2
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	94.16
PF04156		191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	94.15
PF00038		312	Filament: Intermediate filament protein; InterPro:	94.01
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	93.94
PF09730		717	BicD: Microtubule-associated protein Bicaudal-D; I	93.8
PF04111		314	APG6: Autophagy protein Apg6; InterPro: IPR007243	93.65
KOG1003		205	consensus Actin filament-coating protein tropomyos	93.63
KOG4593		716	consensus Mitotic checkpoint protein MAD1 [Cell cy	93.55
PF09787		511	Golgin_A5: Golgin subfamily A member 5; InterPro:	93.53
PF07106		169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	93.35
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	93.23
PF09789		319	DUF2353: Uncharacterized coiled-coil protein (DUF2	93.09
smart00787		312	Spc7 Spc7 kinetochore protein. This domain is foun	92.79
TIGR01843		423	type_I_hlyD type I secretion membrane fusion prote	92.76
KOG0978		698	consensus E3 ubiquitin ligase involved in syntaxin	92.76
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	92.67
PRK04778		569	septation ring formation regulator EzrA; Provision	92.61
PF14662		193	CCDC155: Coiled-coil region of CCDC155	92.56
KOG0979		1072	consensus Structural maintenance of chromosome pro	92.48
KOG2991		330	consensus Splicing regulator [RNA processing and m	92.45
smart00787		312	Spc7 Spc7 kinetochore protein. This domain is foun	92.41
PF10481		307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	92.34
PF12795		240	MscS_porin: Mechanosensitive ion channel porin dom	92.16
PF09787		511	Golgin_A5: Golgin subfamily A member 5; InterPro:	91.98
KOG0999		772	consensus Microtubule-associated protein Bicaudal-	91.86
TIGR00634		563	recN DNA repair protein RecN. All proteins in this	91.81
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	91.54
KOG0980		980	consensus Actin-binding protein SLA2/Huntingtin-in	91.38
TIGR03185		650	DNA_S_dndD DNA sulfur modification protein DndD. T	91.31
PF05622		713	HOOK: HOOK protein; InterPro: IPR008636 This famil	91.27
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	91.19
PF12795		240	MscS_porin: Mechanosensitive ion channel porin dom	91.16
PRK11281		1113	hypothetical protein; Provisional	91.09
PF00769		246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	90.84
PF08614		194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	90.81
KOG0804		493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	90.8
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	90.74
KOG0243		1041	consensus Kinesin-like protein [Cytoskeleton]	90.54
PF12325		120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	90.47
KOG0963		629	consensus Transcription factor/CCAAT displacement	90.29
PF10498		359	IFT57: Intra-flagellar transport protein 57 ; Inte	90.13
TIGR03007		498	pepcterm_ChnLen polysaccharide chain length determ	90.05
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	90.05
PF04111		314	APG6: Autophagy protein Apg6; InterPro: IPR007243	89.66
COG3883		265	Uncharacterized protein conserved in bacteria [Fun	89.61
KOG4643		1195	consensus Uncharacterized coiled-coil protein [Fun	89.43
PF01576		859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	89.21
COG2433		652	Uncharacterized conserved protein [Function unknow	88.87
PF10212		518	TTKRSYEDQ: Predicted coiled-coil domain-containing	88.8
PRK10884		206	SH3 domain-containing protein; Provisional	88.71
PF13851		201	GAS: Growth-arrest specific micro-tubule binding	88.58
TIGR03185		650	DNA_S_dndD DNA sulfur modification protein DndD. T	88.44
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	88.34
PRK10929		1109	putative mechanosensitive channel protein; Provisi	88.16
COG4942		420	Membrane-bound metallopeptidase [Cell division and	88.01
PF10168		717	Nup88: Nuclear pore component; InterPro: IPR019321	88.0
TIGR03007		498	pepcterm_ChnLen polysaccharide chain length determ	87.93
PF12325		120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	87.9
COG4026		290	Uncharacterized protein containing TOPRIM domain,	87.9
COG0419		908	SbcC ATPase involved in DNA repair [DNA replicatio	87.89
COG4372		499	Uncharacterized protein conserved in bacteria with	87.84
KOG0976		1265	consensus Rho/Rac1-interacting serine/threonine ki	87.79
TIGR01005		754	eps_transp_fam exopolysaccharide transport protein	87.79
PF15397		258	DUF4618: Domain of unknown function (DUF4618)	87.58
PRK12704		520	phosphodiesterase; Provisional	87.39
PRK10884		206	SH3 domain-containing protein; Provisional	87.34
PF09730		717	BicD: Microtubule-associated protein Bicaudal-D; I	87.25
PF09304		107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	87.14
TIGR02680		1353	conserved hypothetical protein TIGR02680. Members	87.0
PRK10929		1109	putative mechanosensitive channel protein; Provisi	86.98
PF10186		302	Atg14: UV radiation resistance protein and autopha	86.85
PF10186		302	Atg14: UV radiation resistance protein and autopha	86.8
PF00769		246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	86.79
PF11559		151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	86.77
PF05010		207	TACC: Transforming acidic coiled-coil-containing p	86.61
PF13514		1111	AAA_27: AAA domain	86.56
KOG0964		1200	consensus Structural maintenance of chromosome pro	86.49
KOG4593		716	consensus Mitotic checkpoint protein MAD1 [Cell cy	86.46
PF13514		1111	AAA_27: AAA domain	86.44
PF15450		531	DUF4631: Domain of unknown function (DUF4631)	86.42
TIGR03319		514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	86.32
KOG4643		1195	consensus Uncharacterized coiled-coil protein [Fun	86.24
PF01576		859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	86.21
PF12072		201	DUF3552: Domain of unknown function (DUF3552); Int	86.21
PF05557		722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	86.14
PF15233		134	SYCE1: Synaptonemal complex central element protei	85.86
COG1340		294	Uncharacterized archaeal coiled-coil protein [Func	85.53
KOG1899		861	consensus LAR transmembrane tyrosine phosphatase-i	85.46
PF11559		151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	85.37
TIGR02680		1353	conserved hypothetical protein TIGR02680. Members	85.32
COG0497		557	RecN ATPase involved in DNA repair [DNA replicatio	85.09
PF05335		188	DUF745: Protein of unknown function (DUF745); Inte	85.03
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	84.9
KOG1937		521	consensus Uncharacterized conserved protein [Funct	84.81
PF09738		302	DUF2051: Double stranded RNA binding protein (DUF2	84.74
PF09304		107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	84.71
KOG0995		581	consensus Centromere-associated protein HEC1 [Cell	84.43
TIGR01000		457	bacteriocin_acc bacteriocin secretion accessory pr	84.23
PF13870		177	DUF4201: Domain of unknown function (DUF4201)	83.79
PRK10869		553	recombination and repair protein; Provisional	83.39
PF13851		201	GAS: Growth-arrest specific micro-tubule binding	83.32
PF06160		560	EzrA: Septation ring formation regulator, EzrA ; I	83.2
KOG1853		333	consensus LIS1-interacting protein NUDE [Cytoskele	83.05
PF14073		178	Cep57_CLD: Centrosome localisation domain of Cep57	82.96
PF04012		221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	82.76
KOG0018		1141	consensus Structural maintenance of chromosome pro	82.75
PF10168		717	Nup88: Nuclear pore component; InterPro: IPR019321	82.74
PRK00106		535	hypothetical protein; Provisional	82.51
TIGR03017		444	EpsF chain length determinant protein EpsF. Sequen	82.3
TIGR00634		563	recN DNA repair protein RecN. All proteins in this	82.22
PF10146		230	zf-C4H2: Zinc finger-containing protein ; InterPro	82.17
PF03148		384	Tektin: Tektin family; InterPro: IPR000435 Tektin	81.76
PRK03947		140	prefoldin subunit alpha; Reviewed	81.73
KOG0239		670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	81.56
KOG0982		502	consensus Centrosomal protein Nuf [Cell cycle cont	81.53
COG2433		652	Uncharacterized conserved protein [Function unknow	81.48
KOG4302		660	consensus Microtubule-associated protein essential	81.22
PF15035		182	Rootletin: Ciliary rootlet component, centrosome c	81.16
PF02994		370	Transposase_22: L1 transposable element; InterPro:	81.13
PF15290		305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	81.0
PF05335		188	DUF745: Protein of unknown function (DUF745); Inte	80.97
PF14197		69	Cep57_CLD_2: Centrosome localisation domain of PPC	80.9
PF09728		309	Taxilin: Myosin-like coiled-coil protein; InterPro	80.89
KOG4403		575	consensus Cell surface glycoprotein STIM, contains	80.79
COG3096		1480	MukB Uncharacterized protein involved in chromosom	80.51
PF07106		169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	80.5
PRK10246		1047	exonuclease subunit SbcC; Provisional	80.45
KOG2391		365	consensus Vacuolar sorting protein/ubiquitin recep	80.14
KOG0288		459	consensus WD40 repeat protein TipD [General functi	80.06
PF09789		319	DUF2353: Uncharacterized coiled-coil protein (DUF2	80.02

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants	Back alignment and domain information

Probab=100.00  E-value=1.1e-176  Score=1569.06  Aligned_cols=769  Identities=49%  Similarity=0.645  Sum_probs=683.2

Q ss_pred             chhHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 001389           66 KDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKAS  145 (1088)
Q Consensus        66 kd~lvkqh~kvaeeav~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks  145 (1088)
                      ||+|||||+|||||||+||||||+|+.+||+||+++.+|++++++||+|||||||+||+|||++||||||+||+++.+++
T Consensus         1 k~~lvkqh~kvaeeav~gwekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s   80 (769)
T PF05911_consen    1 KDDLVKQHAKVAEEAVSGWEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKS   80 (769)
T ss_pred             CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHH
Q 001389          146 MEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVL  225 (1088)
Q Consensus       146 ~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vl  225 (1088)
                      .||++++.+||.+|.+++++|+++++||++|+++|++|+++|.+|++.+++++++|..|+++|+++||+|++||||+||+
T Consensus        81 ~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~  160 (769)
T PF05911_consen   81 KEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVL  160 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhhHHHHhhcCCChhhhhccCCC
Q 001389          226 GKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRESPETRRKRLNS  305 (1088)
Q Consensus       226 qkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk~lpgpaa~a~mk~eve~~~~~~~~~r~~~~~~  305 (1088)
                      ++||+||++||+|++|+||+|+|||+|++|||++|||||||||+||||||||||||||||+||+++|++++++||||+++
T Consensus       161 ~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~r~~~~  240 (769)
T PF05911_consen  161 SKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESLGRDSGENRRRRSPS  240 (769)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHhccccccccCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCcccccCCCCCCCCCcchhhhHHHHHHHhHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhHHHHHHHHhhccccc
Q 001389          306 SPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQIEELSKGRKI  385 (1088)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eeEnk~lke~L~~k~~ELq~sr~~~a~t~skL~~~e~q~~~~s~~~~~  385 (1088)
                      ++++++ . ++...+..+.+.++|||+||++||||||||||+|++||+||||||+|||+|||||++||+|+ +.+ ++++
T Consensus       241 ~~~~~~-~-~~~~~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql-~~~-~~~~  316 (769)
T PF05911_consen  241 RPSSPH-D-FSPQNPQKRSKESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL-KSS-GQVS  316 (769)
T ss_pred             cccccc-c-ccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-hccc
Confidence            876443 3 34455566788899999999999999999999999999999999999999999999999999 445 9999


Q ss_pred             cCCcccccccccccccccccCCCCCCCCccchhhhhhhchhhhhccCCCCCCCCccccCccCCcccchHHHhHHhhhccC
Q 001389          386 MEPSRTSIMSYELSLTSMSDIGSDDKVNCAESRASALISESEHLRSGKQREPPFCRTVGASDISLMDDFVEMERLAIVSV  465 (1088)
Q Consensus       386 ~e~~~~~~~~~~~~~~s~s~~g~dd~~s~~~swasalisel~~fk~~k~~~~~~~~~~~~s~~~lMDDFlEmEkLa~~s~  465 (1088)
                      +|+++|+|++||||++|+||+|+||++||++||||||||||||||++|.++++++++++++||+|||||||||||||+|+
T Consensus       317 ~e~~~s~~~~~~~s~~s~se~~~dd~~s~s~SWAsaLiseldqfk~~k~~~~~~~~~~~~~~i~LMDDFlEmEkLA~~s~  396 (769)
T PF05911_consen  317 MELSSSQNTSNPPSLTSMSEDGNDDEGSCSDSWASALISELDQFKNEKVISRSSSKTISSSDIDLMDDFLEMEKLAALSR  396 (769)
T ss_pred             cccccccCCCCCCchhcccccCCCCCCcccchhHHHHhchHHHhccccccccccccCCccccHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999998888888998899999999999999999999


Q ss_pred             CCCCCCCccCcccccccCCCCCCCCCCCCCCcccccccccCCcccccccchhhhhhhhhccCCCchhHHHHHHHHHHhhc
Q 001389          466 NKPDGTSHVSPIRANAIVGPLETESSGHSPATIGEEIFRVPEHQADFGVLNREIKSRDILIGKFPSWLQEILELILEQNH  545 (1088)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~wlq~~l~~v~e~~~  545 (1088)
                      +++.+.++.++...        ++.......+.+.+.++                ..+++.+++|+|||+|+++|+++++
T Consensus       397 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~wLqsv~k~v~~q~~  452 (769)
T PF05911_consen  397 DSSSPSSCSSSEVD--------SDSSVTLESSSKRESVL----------------ESDKLSDRIPEWLQSVLKLVLEQKE  452 (769)
T ss_pred             CCCCCCCCCCcccc--------ccccccccccccccccc----------------cchhhcccccHHHHHHHHHHHHHHH
Confidence            87633333321111        11112222222222211                0157889999999999999999999


Q ss_pred             cCCCChhhhHHHHHHHhhhcccccccccccccccccCCCCCCCCCCCCcchhhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 001389          546 VTNRHPYKILEDVRDALVYIDHQSTHQLVDTRESSNNLHKSNSPHFSSVTDAEISLSEKNQQFHSDLSKSIRKIAELIEK  625 (1088)
Q Consensus       546 ~~~~~~~~iledi~~al~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~l~~si~~i~~lie~  625 (1088)
                      +++++  .||+||+.||++++++..++..+.      .+                               +.....+++.
T Consensus       453 ~s~i~--~ILedI~~al~~~~~~~~~~~~~~------~~-------------------------------~~~~~sL~e~  493 (769)
T PF05911_consen  453 VSKIS--EILEDIEIALDSINNSSNCDDDSE------EY-------------------------------ESMEASLVEE  493 (769)
T ss_pred             hhhHH--HHHHHHHHHHHhhccccccccccc------hh-------------------------------hhhhhhHHHH
Confidence            99999  999999999999998865443111      00                               1234445555


Q ss_pred             hhcCCcccccccccccCCCccccccCCCCCcceeeeecccchhhHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHHHHH
Q 001389          626 INLTSPEYGLLENLSKKDGSVISYKNTAPSGYMVRVFQWKTSELSDILQQFVHACYGVLNKEADFNKFANDLSIALEWIM  705 (1088)
Q Consensus       626 i~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~k~sel~~~Le~f~~~c~~~L~gk~~l~~f~~el~~~L~wi~  705 (1088)
                      +..+.....                       ...++.|+.++|+.+|++|+|+|+|+|+|+++|++|+.|||.+|+||+
T Consensus       494 ~~s~~~~s~-----------------------eL~~avskIsEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwIl  550 (769)
T PF05911_consen  494 SKSMIEISQ-----------------------ELNVAVSKISEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWIL  550 (769)
T ss_pred             HHHHHhhcc-----------------------cHHHHHHhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence            554333211                       123445555899999999999999999999999999999999999999


Q ss_pred             hhccccccchhhHHHHhhccCcccccccchhhhccccccccccCCCCCCCCCCCCCcccccCCCccccCCCCCCCCCCCc
Q 001389          706 NHCFSLQDVSSMKDEIKKHFDWDEVRSESEAEVGMVYQFTEADGLHLPRGQSSCLPTFAVANGHYFSHKKELPSNESEPG  785 (1088)
Q Consensus       706 n~~~s~~d~s~~~d~i~~~f~~~~s~s~~e~e~~~~~~~~~~dk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  785 (1088)
                      +|||+++|+++|++.|+++|+|+.+.+ .|.     +..++.+                             .......+
T Consensus       551 s~~~SLqDv~s~~sEIK~~f~~~ss~e-~E~-----~~~dea~-----------------------------~~~~~el~  595 (769)
T PF05911_consen  551 SNCFSLQDVSSMRSEIKKNFDGDSSSE-AEI-----NSEDEAD-----------------------------TSEKKELE  595 (769)
T ss_pred             HccchHHHHHHHHHHHHHhhhhccccc-ccc-----cchHHHH-----------------------------HHHHHHHH
Confidence            999999999999999999999999863 321     2211111                             01122348


Q ss_pred             hhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001389          786 SEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDL  865 (1088)
Q Consensus       786 eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl  865 (1088)
                      ++++.+++++.++++.+..|+++++.++.+++++++.|.+|+.+|..++++++.+++|++++.++|+.+++++..+++++
T Consensus       596 eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~  675 (769)
T PF05911_consen  596 EELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEA  675 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhcCCCCcccchhhhhhhhhhHhHHHHHhhHHHHHHHHHHHHH
Q 001389          866 NEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTKSGIPTDELKQDEKQIQTDWEIATASEKLAECQETILNLGK  945 (1088)
Q Consensus       866 ~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~~~~~~~~~~~e~~~~kqe~EIaaAAeKLAECQETI~~LGK  945 (1088)
                      ++++.|+.+|+.||++++..|+++.++|++|++||+++..+....... +++++++||||||+||+|||||||||+||||
T Consensus       676 ~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~-~~~~k~kqe~EiaaAA~KLAECQeTI~sLGk  754 (769)
T PF05911_consen  676 EELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLA-NEDKKIKQEKEIAAAAEKLAECQETIASLGK  754 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhcc-ccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999865443333 8899999999999999999999999999999


Q ss_pred             HHhhccCchhhhcccc
Q 001389          946 QLKALASPREAALFDK  961 (1088)
Q Consensus       946 QLKaLa~~~e~~~~d~  961 (1088)
                      ||||||||. .+++|+
T Consensus       755 QLksLa~~~-d~~~ds  769 (769)
T PF05911_consen  755 QLKSLATPE-DFLLDS  769 (769)
T ss_pred             HHHhcCChh-hhhccC
Confidence            999999887 455553

The function of this family is unknown.

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]	Back alignment and domain information

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]	Back alignment and domain information

>PF14662 CCDC155: Coiled-coil region of CCDC155	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>PF15254 CCDC14: Coiled-coil domain-containing protein 14	Back alignment and domain information

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site	Back alignment and domain information

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]	Back alignment and domain information

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins	Back alignment and domain information

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease	Back alignment and domain information

>PF14915 CCDC144C: CCDC144C protein coiled-coil region	Back alignment and domain information

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues	Back alignment and domain information

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed	Back alignment and domain information

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>PRK11281 hypothetical protein; Provisional	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []	Back alignment and domain information

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]	Back alignment and domain information

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure	Back alignment and domain information

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function	Back alignment and domain information

>smart00787 Spc7 Spc7 kinetochore protein	Back alignment and domain information

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family	Back alignment and domain information

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>PF14662 CCDC155: Coiled-coil region of CCDC155	Back alignment and domain information

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>KOG2991 consensus Splicing regulator [RNA processing and modification]	Back alignment and domain information

>smart00787 Spc7 Spc7 kinetochore protein	Back alignment and domain information

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []	Back alignment and domain information

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain	Back alignment and domain information

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure	Back alignment and domain information

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>TIGR00634 recN DNA repair protein RecN	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]	Back alignment and domain information

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD	Back alignment and domain information

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain	Back alignment and domain information

>PRK11281 hypothetical protein; Provisional	Back alignment and domain information

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []	Back alignment and domain information

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []	Back alignment and domain information

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]	Back alignment and domain information

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms	Back alignment and domain information

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]	Back alignment and domain information

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>COG2433 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif	Back alignment and domain information

>PRK10884 SH3 domain-containing protein; Provisional	Back alignment and domain information

>PF13851 GAS: Growth-arrest specific micro-tubule binding	Back alignment and domain information

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>PRK10929 putative mechanosensitive channel protein; Provisional	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs	Back alignment and domain information

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily	Back alignment and domain information

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []	Back alignment and domain information

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]	Back alignment and domain information

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]	Back alignment and domain information

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]	Back alignment and domain information

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family	Back alignment and domain information

>PF15397 DUF4618: Domain of unknown function (DUF4618)	Back alignment and domain information

>PRK12704 phosphodiesterase; Provisional	Back alignment and domain information

>PRK10884 SH3 domain-containing protein; Provisional	Back alignment and domain information

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []	Back alignment and domain information

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)	Back alignment and domain information

>TIGR02680 conserved hypothetical protein TIGR02680	Back alignment and domain information

>PRK10929 putative mechanosensitive channel protein; Provisional	Back alignment and domain information

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking	Back alignment and domain information

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking	Back alignment and domain information

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []	Back alignment and domain information

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch	Back alignment and domain information

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules	Back alignment and domain information

>PF13514 AAA_27: AAA domain	Back alignment and domain information

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF13514 AAA_27: AAA domain	Back alignment and domain information

>PF15450 DUF4631: Domain of unknown function (DUF4631)	Back alignment and domain information

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF	Back alignment and domain information

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]	Back alignment and domain information

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised	Back alignment and domain information

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins	Back alignment and domain information

>PF15233 SYCE1: Synaptonemal complex central element protein 1	Back alignment and domain information

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]	Back alignment and domain information

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]	Back alignment and domain information

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch	Back alignment and domain information

>TIGR02680 conserved hypothetical protein TIGR02680	Back alignment and domain information

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA	Back alignment and domain information

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)	Back alignment and domain information

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein	Back alignment and domain information

>PF13870 DUF4201: Domain of unknown function (DUF4201)	Back alignment and domain information

>PRK10869 recombination and repair protein; Provisional	Back alignment and domain information

>PF13851 GAS: Growth-arrest specific micro-tubule binding	Back alignment and domain information

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site	Back alignment and domain information

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]	Back alignment and domain information

>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57	Back alignment and domain information

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription	Back alignment and domain information

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs	Back alignment and domain information

>PRK00106 hypothetical protein; Provisional	Back alignment and domain information

>TIGR03017 EpsF chain length determinant protein EpsF	Back alignment and domain information

>TIGR00634 recN DNA repair protein RecN	Back alignment and domain information

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []	Back alignment and domain information

>PRK03947 prefoldin subunit alpha; Reviewed	Back alignment and domain information

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	Back alignment and domain information

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>COG2433 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion	Back alignment and domain information

>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition	Back alignment and domain information

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp	Back alignment and domain information

>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function	Back alignment and domain information

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89	Back alignment and domain information

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed	Back alignment and domain information

>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]	Back alignment and domain information

>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]	Back alignment and domain information

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences	Back alignment and domain information

>PRK10246 exonuclease subunit SbcC; Provisional	Back alignment and domain information

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]	Back alignment and domain information

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1088
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	2e-14
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	2e-13
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	6e-08
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-07
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	6e-05
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	4e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-08
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-07
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	2e-04
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	8e-04
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	8e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

 Score = 77.6 bits (191), Expect = 2e-14
 Identities = 44/272 (16%), Positives = 105/272 (38%), Gaps = 26/272 (9%)

Query: 32   EAEMQILLTDKAELENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEV 91
            E     L   K ELE  +  +  ++              ++  + +Q+    ++K + ++
Sbjct: 912  EEMRVRLAAKKQELEEILHEMEARI--------------EEEEERSQQLQAEKKKMQQQM 957

Query: 92   VSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIH--DAVMKASMEFE 149
            + L+++L+     R   +   +  D  +K+  D +  + ++  +       + +   +  
Sbjct: 958  LDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLT 1017

Query: 150  QSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLD 209
             +L   EEK    +K   K     + L   L  +EK  ++L K + + E +S+ L  ++ 
Sbjct: 1018 TNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIA 1077

Query: 210  STEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRV 269
              + + A LK ++    +EL+      E      + + K+  E    I+ L+ + +  + 
Sbjct: 1078 ELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEK- 1136

Query: 270  LVRKRLPGPAALAKMKNEVEILGRESPETRRK 301
                     AA  K + +   L  E    + +
Sbjct: 1137 ---------AARNKAEKQKRDLSEELEALKTE 1159

PyMOL of 1i84

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284	Back alignment and structure

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284	Back alignment and structure

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1088
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.2
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.19
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	97.85
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	97.75
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.76
3o0z_A		168	RHO-associated protein kinase 1; coiled-coil, tran	96.37
2v71_A		189	Nuclear distribution protein NUDE-like 1; developm	96.36
2v71_A		189	Nuclear distribution protein NUDE-like 1; developm	96.26
3na7_A		256	HP0958; flagellar biogenesis, flagellum export, C4	96.25
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.16
3na7_A		256	HP0958; flagellar biogenesis, flagellum export, C4	96.02
2fxo_A		129	Myosin heavy chain, cardiac muscle beta isoform; c	95.63
3u1c_A		101	Tropomyosin alpha-1 chain; anti-parallel coiled co	95.6
2fxo_A		129	Myosin heavy chain, cardiac muscle beta isoform; c	95.41
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.38
3o0z_A		168	RHO-associated protein kinase 1; coiled-coil, tran	94.98
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	94.95
3u59_A		101	Tropomyosin beta chain; muscle contraction, actin,	94.84
2efr_A		155	General control protein GCN4 and tropomyosin 1 Al;	94.39
2efr_A		155	General control protein GCN4 and tropomyosin 1 Al;	94.21
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	94.0
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	93.8
3u1c_A		101	Tropomyosin alpha-1 chain; anti-parallel coiled co	93.37
3ol1_A		119	Vimentin; structural genomics, PSI-2, protein stru	93.22
3u59_A		101	Tropomyosin beta chain; muscle contraction, actin,	92.21
3tnu_B		129	Keratin, type II cytoskeletal 5; coiled-coil, stru	92.2
2b9c_A		147	Striated-muscle alpha tropomyosin; alpha-helix, co	91.86
1go4_E		100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	91.83
3tnu_A		131	Keratin, type I cytoskeletal 14; coiled-coil, stru	91.69
1ic2_A		81	Tropomyosin alpha chain, skeletal muscle; alpha-he	90.85
3ol1_A		119	Vimentin; structural genomics, PSI-2, protein stru	90.53
3mq9_A		471	Bone marrow stromal antigen 2 fused to maltose-BI	90.28
2ocy_A		154	RAB guanine nucleotide exchange factor SEC2; RAB,	90.22
2ocy_A		154	RAB guanine nucleotide exchange factor SEC2; RAB,	89.3
1ic2_A		81	Tropomyosin alpha chain, skeletal muscle; alpha-he	88.98
3q8t_A		96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	88.85
2v66_B		111	Nuclear distribution protein NUDE-like 1; structur	88.71
3swk_A		86	Vimentin; cytoskeleton, intermediate filament, alp	87.24
1deq_A		390	Fibrinogen (alpha chain); coiled-coil, blood clott	87.2
3ghg_A		562	Fibrinogen alpha chain; triple-stranded coiled coi	86.5
2b9c_A		147	Striated-muscle alpha tropomyosin; alpha-helix, co	86.39
3hnw_A		138	Uncharacterized protein; coiled-coil, structural g	86.27
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	85.47
3ghg_A		562	Fibrinogen alpha chain; triple-stranded coiled coi	85.23
3hnw_A		138	Uncharacterized protein; coiled-coil, structural g	85.17
3tnu_B		129	Keratin, type II cytoskeletal 5; coiled-coil, stru	85.16
3swk_A		86	Vimentin; cytoskeleton, intermediate filament, alp	84.6
3tnu_A		131	Keratin, type I cytoskeletal 14; coiled-coil, stru	84.5
2eqb_B		97	RAB guanine nucleotide exchange factor SEC2; coile	84.42
1l8d_A		112	DNA double-strand break repair RAD50 ATPase; zinc	83.89
1x79_B		112	RAB GTPase binding effector protein 1; rabaptin5,	82.74
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	82.05
2e7s_A		135	RAB guanine nucleotide exchange factor SEC2; coile	81.61
1m1j_B		464	Fibrinogen beta chain; coiled coils, disulfide rin	81.26
2v4h_A		110	NF-kappa-B essential modulator; transcription, met	81.13
3a7p_A		152	Autophagy protein 16; coiled-coil, coiled coil, cy	81.13
2jee_A		81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	80.15

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A	Back alignment and structure

Probab=98.20  E-value=0.0079  Score=61.41  Aligned_cols=32  Identities=19%  Similarity=0.255  Sum_probs=11.4

Q ss_pred             HHhHHHHHHHHHHHhhhhhhhhHHHHHHHHhh
Q 001389          335 RAMEEENNSLKEVLDKKTNELQFSRTMYARAA  366 (1088)
Q Consensus       335 ~~~eeEnk~lke~L~~k~~ELq~sr~~~a~t~  366 (1088)
                      ..++.+...+...+..-..++...+.-+++..
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (284)
T 1c1g_A          240 EFAERSVTKLEKSIDDLEDELYAQKLKYKAIS  271 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333

PyMOL of 1c1g

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*	Back alignment and structure

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}	Back alignment and structure

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}	Back alignment and structure

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}	Back alignment and structure

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}	Back alignment and structure

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}	Back alignment and structure

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A	Back alignment and structure

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A	Back alignment and structure

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}	Back alignment and structure

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*	Back alignment and structure

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}	Back alignment and structure

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A	Back alignment and structure

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A	Back alignment and structure

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}	Back alignment and structure

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}	Back alignment and structure

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1	Back alignment and structure

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1	Back alignment and structure

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}	Back alignment and structure

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1	Back alignment and structure

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}	Back alignment and structure

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1	Back alignment and structure

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1	Back alignment and structure

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1	Back alignment and structure

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}	Back alignment and structure

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}	Back alignment and structure

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}	Back alignment and structure

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*	Back alignment and structure

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1	Back alignment and structure

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*	Back alignment and structure

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}	Back alignment and structure

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}	Back alignment and structure

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}	Back alignment and structure

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}	Back alignment and structure

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1	Back alignment and structure

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1	Back alignment and structure

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1	Back alignment and structure

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*	Back alignment and structure

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}	Back alignment and structure

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}	Back alignment and structure

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00