Query 001390
Match_columns 1088
No_of_seqs 167 out of 177
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 23:35:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001390.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001390hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05911 DUF869: Plant protein 100.0 1E-176 2E-181 1569.1 70.9 769 66-961 1-769 (769)
2 KOG0996 Structural maintenance 99.5 4.2E-09 9.2E-14 130.1 50.0 207 43-271 344-551 (1293)
3 TIGR02169 SMC_prok_A chromosom 99.3 5.9E-06 1.3E-10 105.6 66.2 31 923-953 895-925 (1164)
4 COG1196 Smc Chromosome segrega 99.2 6.7E-06 1.5E-10 106.7 60.0 30 920-949 887-916 (1163)
5 TIGR02168 SMC_prok_B chromosom 99.2 4.3E-05 9.3E-10 97.5 62.5 27 926-952 896-922 (1179)
6 TIGR02169 SMC_prok_A chromosom 99.1 0.00013 2.7E-09 93.6 60.0 20 933-952 953-972 (1164)
7 COG1196 Smc Chromosome segrega 98.8 0.003 6.4E-08 82.7 61.9 81 46-126 231-311 (1163)
8 TIGR02168 SMC_prok_B chromosom 98.7 0.0047 1E-07 79.3 62.2 48 330-377 438-485 (1179)
9 KOG0161 Myosin class II heavy 98.5 0.026 5.7E-07 76.2 54.0 82 41-122 1063-1144(1930)
10 KOG0250 DNA repair protein RAD 98.4 0.026 5.7E-07 71.9 61.6 206 145-431 283-489 (1074)
11 KOG0161 Myosin class II heavy 98.4 0.043 9.4E-07 74.3 56.2 254 86-379 842-1102(1930)
12 PRK02224 chromosome segregatio 98.2 0.063 1.4E-06 68.3 58.1 49 329-377 346-394 (880)
13 PF05911 DUF869: Plant protein 98.1 0.065 1.4E-06 67.5 46.7 217 604-884 496-715 (769)
14 PRK03918 chromosome segregatio 97.9 0.15 3.3E-06 64.8 60.5 42 85-126 189-230 (880)
15 PRK02224 chromosome segregatio 97.9 0.19 4.2E-06 64.0 62.8 116 788-904 574-694 (880)
16 PF07888 CALCOCO1: Calcium bin 97.9 0.09 1.9E-06 63.7 37.5 50 77-126 194-243 (546)
17 TIGR00606 rad50 rad50. This fa 97.8 0.42 9E-06 64.0 61.9 49 330-378 575-623 (1311)
18 PF00261 Tropomyosin: Tropomyo 97.5 0.07 1.5E-06 58.4 26.9 171 83-272 30-221 (237)
19 PRK04778 septation ring format 97.4 0.085 1.8E-06 64.5 29.4 193 87-288 254-453 (569)
20 PF07888 CALCOCO1: Calcium bin 97.3 0.32 7E-06 59.1 31.1 118 88-210 149-266 (546)
21 KOG0933 Structural maintenance 97.3 1.2 2.5E-05 57.2 47.4 191 70-267 246-446 (1174)
22 KOG4673 Transcription factor T 97.3 0.12 2.6E-06 63.1 26.8 236 44-295 350-621 (961)
23 PF09755 DUF2046: Uncharacteri 97.2 0.2 4.3E-06 57.1 26.8 165 84-273 29-203 (310)
24 KOG0977 Nuclear envelope prote 97.2 0.16 3.4E-06 61.7 27.0 289 45-365 40-361 (546)
25 PRK11637 AmiB activator; Provi 97.2 0.15 3.2E-06 60.2 26.6 23 249-271 227-249 (428)
26 PRK04863 mukB cell division pr 97.1 2.3 5E-05 57.8 53.4 116 789-904 988-1115(1486)
27 KOG4674 Uncharacterized conser 97.0 2.7 6E-05 57.3 54.6 210 42-271 807-1020(1822)
28 PF00038 Filament: Intermediat 97.0 0.84 1.8E-05 51.3 32.2 44 83-126 48-91 (312)
29 PRK04863 mukB cell division pr 97.0 3.1 6.7E-05 56.6 54.9 145 75-236 283-427 (1486)
30 PF12128 DUF3584: Protein of u 96.9 1.7 3.7E-05 57.9 35.4 135 39-173 599-748 (1201)
31 KOG0612 Rho-associated, coiled 96.9 1.6 3.4E-05 57.1 32.6 76 189-267 613-693 (1317)
32 KOG0933 Structural maintenance 96.8 2.7 5.9E-05 54.1 45.8 133 190-342 404-536 (1174)
33 PRK11637 AmiB activator; Provi 96.8 0.46 1E-05 56.2 26.3 40 87-126 45-84 (428)
34 KOG4674 Uncharacterized conser 96.8 4.1 8.9E-05 55.7 52.6 204 43-268 139-357 (1822)
35 PF12718 Tropomyosin_1: Tropom 96.8 0.082 1.8E-06 54.1 17.1 114 788-905 2-115 (143)
36 PF00261 Tropomyosin: Tropomyo 96.7 1.1 2.4E-05 49.1 26.4 140 88-234 14-155 (237)
37 KOG4673 Transcription factor T 96.6 3.3 7.3E-05 51.3 33.8 291 44-361 427-772 (961)
38 PF14662 CCDC155: Coiled-coil 96.4 1.3 2.9E-05 47.6 23.8 174 83-272 16-189 (193)
39 KOG0996 Structural maintenance 96.4 5.6 0.00012 52.1 57.9 120 165-290 441-560 (1293)
40 PF10174 Cast: RIM-binding pro 96.4 4.3 9.3E-05 51.9 31.8 165 71-243 321-502 (775)
41 PRK09039 hypothetical protein; 96.4 0.12 2.6E-06 59.7 17.2 63 785-847 45-107 (343)
42 TIGR00606 rad50 rad50. This fa 96.3 7.7 0.00017 52.4 58.3 29 925-953 889-917 (1311)
43 PF10174 Cast: RIM-binding pro 96.3 1.7 3.8E-05 55.3 27.5 225 45-276 341-604 (775)
44 KOG0977 Nuclear envelope prote 96.2 0.96 2.1E-05 55.2 24.2 212 79-291 124-361 (546)
45 PF09726 Macoilin: Transmembra 96.2 0.59 1.3E-05 58.8 23.1 67 199-273 587-654 (697)
46 PF09726 Macoilin: Transmembra 96.2 0.96 2.1E-05 57.0 24.6 141 86-236 422-575 (697)
47 PF10473 CENP-F_leu_zip: Leuci 96.1 0.62 1.3E-05 47.8 18.7 109 790-905 7-115 (140)
48 COG1579 Zn-ribbon protein, pos 96.1 0.22 4.8E-06 55.0 16.5 109 797-905 28-138 (239)
49 KOG1029 Endocytic adaptor prot 96.1 6.2 0.00013 49.7 29.5 135 122-271 379-516 (1118)
50 PF12718 Tropomyosin_1: Tropom 96.0 0.2 4.2E-06 51.4 14.9 63 832-894 77-139 (143)
51 PRK03918 chromosome segregatio 96.0 7.5 0.00016 49.8 60.0 43 82-124 193-235 (880)
52 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.0 0.43 9.2E-06 48.0 16.8 124 86-224 7-130 (132)
53 KOG0971 Microtubule-associated 96.0 3.3 7.2E-05 52.7 27.1 58 209-266 451-508 (1243)
54 PHA02562 46 endonuclease subun 96.0 3.5 7.5E-05 49.9 27.5 31 198-228 343-373 (562)
55 KOG0964 Structural maintenance 96.0 8.2 0.00018 49.9 44.7 170 43-227 187-370 (1200)
56 KOG0976 Rho/Rac1-interacting s 95.9 7.8 0.00017 49.0 31.8 116 209-355 280-395 (1265)
57 COG1579 Zn-ribbon protein, pos 95.8 0.79 1.7E-05 50.8 19.3 100 68-170 24-123 (239)
58 PF15254 CCDC14: Coiled-coil d 95.8 0.42 9E-06 59.6 18.6 167 80-273 374-547 (861)
59 KOG0963 Transcription factor/C 95.8 7.5 0.00016 48.1 32.8 268 46-373 58-357 (629)
60 PF05667 DUF812: Protein of un 95.7 1.3 2.9E-05 54.8 22.8 187 84-273 323-516 (594)
61 KOG1003 Actin filament-coating 95.7 2.8 6.1E-05 45.2 22.0 144 87-249 2-145 (205)
62 KOG0971 Microtubule-associated 95.7 2.9 6.4E-05 53.2 25.2 124 94-238 229-357 (1243)
63 PF05701 WEMBL: Weak chloropla 95.5 8.7 0.00019 47.1 35.9 220 46-271 68-311 (522)
64 COG4942 Membrane-bound metallo 95.5 5.7 0.00012 47.4 25.5 39 88-126 72-110 (420)
65 KOG0980 Actin-binding protein 95.5 0.74 1.6E-05 58.1 19.1 157 788-944 360-521 (980)
66 PF15070 GOLGA2L5: Putative go 95.3 8.5 0.00018 48.2 27.7 190 87-277 85-316 (617)
67 PF06160 EzrA: Septation ring 95.2 12 0.00025 46.4 28.9 183 89-280 252-441 (560)
68 COG3883 Uncharacterized protei 95.1 2.3 4.9E-05 47.9 20.0 163 785-952 37-224 (265)
69 PF10473 CENP-F_leu_zip: Leuci 95.1 1.2 2.7E-05 45.7 16.6 11 940-950 128-138 (140)
70 PF05557 MAD: Mitotic checkpoi 95.1 0.081 1.8E-06 66.4 9.8 128 197-355 501-636 (722)
71 PF15619 Lebercilin: Ciliary p 95.0 2.4 5.3E-05 45.6 19.4 159 43-233 15-184 (194)
72 KOG0612 Rho-associated, coiled 95.0 19 0.0004 47.9 33.2 81 86-166 476-559 (1317)
73 PHA02562 46 endonuclease subun 95.0 5.4 0.00012 48.3 24.7 135 145-293 222-372 (562)
74 PF08614 ATG16: Autophagy prot 95.0 0.12 2.7E-06 54.8 9.5 99 783-881 78-176 (194)
75 PRK09039 hypothetical protein; 95.0 0.66 1.4E-05 53.7 16.1 115 785-899 52-173 (343)
76 PF15619 Lebercilin: Ciliary p 95.0 6.6 0.00014 42.4 22.8 104 154-273 86-189 (194)
77 PF14915 CCDC144C: CCDC144C pr 95.0 8.9 0.00019 43.9 25.2 196 42-273 86-296 (305)
78 COG1340 Uncharacterized archae 94.9 7 0.00015 44.7 23.1 172 87-273 53-239 (294)
79 PF05701 WEMBL: Weak chloropla 94.8 14 0.0003 45.4 35.7 69 196-271 285-353 (522)
80 PF04156 IncA: IncA protein; 94.8 1.3 2.8E-05 46.5 16.3 51 819-869 100-150 (191)
81 PRK01156 chromosome segregatio 94.6 20 0.00044 46.4 30.6 19 329-347 473-491 (895)
82 PF04849 HAP1_N: HAP1 N-termin 94.6 9.5 0.0002 43.9 23.4 186 152-379 92-302 (306)
83 PF09728 Taxilin: Myosin-like 94.5 11 0.00025 43.3 25.8 68 195-269 240-307 (309)
84 TIGR01843 type_I_hlyD type I s 94.3 4.4 9.6E-05 46.8 20.9 38 925-965 247-284 (423)
85 PF08317 Spc7: Spc7 kinetochor 94.3 1.5 3.3E-05 50.3 16.9 11 940-950 278-288 (325)
86 KOG0995 Centromere-associated 94.2 19 0.00041 44.5 30.7 168 205-379 307-479 (581)
87 PF04849 HAP1_N: HAP1 N-termin 94.2 13 0.00029 42.8 23.5 98 843-952 207-304 (306)
88 PF05667 DUF812: Protein of un 94.2 4 8.6E-05 50.8 21.0 164 785-948 327-529 (594)
89 PRK11281 hypothetical protein; 94.2 1.8 3.8E-05 57.2 18.9 59 215-273 194-252 (1113)
90 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.2 3 6.5E-05 42.0 16.6 20 928-947 109-128 (132)
91 PF04156 IncA: IncA protein; 94.2 1.7 3.7E-05 45.6 15.6 19 864-882 152-170 (191)
92 PF00038 Filament: Intermediat 94.0 13 0.00028 41.9 31.4 43 81-123 95-137 (312)
93 PF08317 Spc7: Spc7 kinetochor 93.9 6.7 0.00015 45.1 21.0 69 99-172 131-199 (325)
94 PF09730 BicD: Microtubule-ass 93.8 4.9 0.00011 50.9 20.8 167 783-949 269-465 (717)
95 PF04111 APG6: Autophagy prote 93.7 0.94 2E-05 51.9 13.5 91 816-906 45-135 (314)
96 KOG1003 Actin filament-coating 93.6 5.9 0.00013 42.9 18.1 166 787-954 5-174 (205)
97 KOG4593 Mitotic checkpoint pro 93.6 24 0.00052 44.5 25.4 131 198-366 502-639 (716)
98 PF09787 Golgin_A5: Golgin sub 93.5 19 0.00041 44.1 24.9 53 176-228 244-303 (511)
99 PF07106 TBPIP: Tat binding pr 93.3 0.72 1.6E-05 47.9 10.9 65 785-849 71-137 (169)
100 KOG0946 ER-Golgi vesicle-tethe 93.2 2.6 5.5E-05 53.2 16.7 157 791-954 662-829 (970)
101 PF09789 DUF2353: Uncharacteri 93.1 6.2 0.00013 45.7 18.6 149 89-242 16-169 (319)
102 smart00787 Spc7 Spc7 kinetocho 92.8 4 8.6E-05 47.0 16.7 78 864-953 205-286 (312)
103 TIGR01843 type_I_hlyD type I s 92.8 7.6 0.00017 44.9 19.3 57 791-847 128-184 (423)
104 KOG0978 E3 ubiquitin ligase in 92.8 36 0.00079 43.2 28.4 100 191-290 537-639 (698)
105 KOG0994 Extracellular matrix g 92.7 46 0.001 44.2 27.6 80 47-126 1511-1600(1758)
106 PRK04778 septation ring format 92.6 6.4 0.00014 48.6 19.3 63 788-850 277-339 (569)
107 PF14662 CCDC155: Coiled-coil 92.6 15 0.00033 39.7 19.4 121 785-905 21-144 (193)
108 KOG0979 Structural maintenance 92.5 18 0.0004 47.1 23.0 174 86-263 178-354 (1072)
109 KOG2991 Splicing regulator [RN 92.4 22 0.00048 40.0 21.1 215 63-279 76-316 (330)
110 smart00787 Spc7 Spc7 kinetocho 92.4 5.3 0.00011 46.0 17.1 116 821-948 144-263 (312)
111 PF10481 CENP-F_N: Cenp-F N-te 92.3 6.7 0.00014 44.3 16.9 80 161-247 57-136 (307)
112 PF12795 MscS_porin: Mechanose 92.2 21 0.00047 39.2 21.7 181 76-271 25-208 (240)
113 PF09787 Golgin_A5: Golgin sub 92.0 37 0.00081 41.6 26.5 171 84-263 118-310 (511)
114 KOG0999 Microtubule-associated 91.9 40 0.00086 41.6 30.2 200 41-255 9-236 (772)
115 TIGR00634 recN DNA repair prot 91.8 21 0.00045 44.1 22.3 125 207-379 267-391 (563)
116 PF15070 GOLGA2L5: Putative go 91.5 44 0.00096 42.1 24.7 177 86-273 33-220 (617)
117 KOG0980 Actin-binding protein 91.4 56 0.0012 42.4 28.9 32 861-892 942-973 (980)
118 TIGR03185 DNA_S_dndD DNA sulfu 91.3 49 0.0011 41.6 27.1 28 326-353 392-419 (650)
119 PF05622 HOOK: HOOK protein; 91.3 0.06 1.3E-06 67.5 0.0 69 203-271 456-525 (713)
120 KOG0946 ER-Golgi vesicle-tethe 91.2 42 0.00091 43.1 23.5 52 341-393 850-901 (970)
121 PF12795 MscS_porin: Mechanose 91.2 18 0.00039 39.8 18.9 84 188-271 109-201 (240)
122 PRK11281 hypothetical protein; 91.1 70 0.0015 43.0 27.1 61 201-268 194-254 (1113)
123 PF00769 ERM: Ezrin/radixin/mo 90.8 6.6 0.00014 43.7 15.3 86 790-875 2-87 (246)
124 PF08614 ATG16: Autophagy prot 90.8 2.5 5.4E-05 45.1 11.6 111 785-895 73-183 (194)
125 KOG0804 Cytoplasmic Zn-finger 90.8 6.4 0.00014 47.1 15.6 94 808-902 348-446 (493)
126 PF12128 DUF3584: Protein of u 90.7 78 0.0017 42.9 59.5 226 49-290 308-551 (1201)
127 KOG0243 Kinesin-like protein [ 90.5 9.8 0.00021 49.8 18.1 28 668-695 325-352 (1041)
128 PF12325 TMF_TATA_bd: TATA ele 90.5 5.8 0.00013 39.9 13.0 94 787-898 17-110 (120)
129 KOG0963 Transcription factor/C 90.3 59 0.0013 40.8 26.4 103 89-195 235-341 (629)
130 PF10498 IFT57: Intra-flagella 90.1 7.5 0.00016 45.7 15.6 85 787-881 221-305 (359)
131 TIGR03007 pepcterm_ChnLen poly 90.1 14 0.0003 44.4 18.3 18 656-673 122-139 (498)
132 KOG1029 Endocytic adaptor prot 90.1 13 0.00027 47.2 17.7 144 795-953 467-617 (1118)
133 PF04111 APG6: Autophagy prote 89.7 4.1 8.9E-05 46.9 12.8 87 801-887 44-130 (314)
134 COG3883 Uncharacterized protei 89.6 42 0.00092 38.2 22.0 42 85-126 69-110 (265)
135 KOG4643 Uncharacterized coiled 89.4 77 0.0017 41.8 24.1 70 199-274 530-600 (1195)
136 PF01576 Myosin_tail_1: Myosin 89.2 0.11 2.5E-06 66.4 0.0 108 789-896 746-853 (859)
137 COG2433 Uncharacterized conser 88.9 5.4 0.00012 49.2 13.4 73 821-897 436-508 (652)
138 PF10212 TTKRSYEDQ: Predicted 88.8 51 0.0011 40.6 21.3 97 151-268 414-514 (518)
139 PRK10884 SH3 domain-containing 88.7 4.6 0.0001 44.0 11.7 12 788-799 95-106 (206)
140 PF13851 GAS: Growth-arrest sp 88.6 40 0.00088 36.6 19.7 95 804-902 31-125 (201)
141 TIGR03185 DNA_S_dndD DNA sulfu 88.4 80 0.0017 39.8 28.8 18 86-103 266-283 (650)
142 KOG0250 DNA repair protein RAD 88.3 1E+02 0.0022 41.0 54.2 67 931-999 818-885 (1074)
143 PRK10929 putative mechanosensi 88.2 36 0.00078 45.6 21.1 57 215-271 175-231 (1109)
144 COG4942 Membrane-bound metallo 88.0 70 0.0015 38.6 25.7 45 200-244 172-216 (420)
145 PF10168 Nup88: Nuclear pore c 88.0 19 0.00042 45.9 18.1 72 141-222 598-669 (717)
146 TIGR03007 pepcterm_ChnLen poly 87.9 60 0.0013 39.1 21.6 6 320-325 408-413 (498)
147 PF12325 TMF_TATA_bd: TATA ele 87.9 16 0.00035 36.8 14.0 72 809-891 18-89 (120)
148 COG4026 Uncharacterized protei 87.9 4.5 9.7E-05 44.5 10.7 31 851-881 165-195 (290)
149 COG0419 SbcC ATPase involved i 87.9 1E+02 0.0022 40.4 30.4 47 226-272 388-434 (908)
150 COG4372 Uncharacterized protei 87.8 60 0.0013 38.7 20.2 85 785-869 87-178 (499)
151 KOG0976 Rho/Rac1-interacting s 87.8 97 0.0021 40.0 28.4 101 95-195 186-301 (1265)
152 TIGR01005 eps_transp_fam exopo 87.8 24 0.00051 44.9 18.9 44 185-228 288-331 (754)
153 PF15397 DUF4618: Domain of un 87.6 40 0.00087 38.2 18.3 145 103-271 81-230 (258)
154 PRK12704 phosphodiesterase; Pr 87.4 30 0.00065 42.7 18.7 102 145-255 63-164 (520)
155 PRK10884 SH3 domain-containing 87.3 8.4 0.00018 42.0 12.6 21 861-881 144-164 (206)
156 PF09730 BicD: Microtubule-ass 87.2 1E+02 0.0022 39.7 51.2 269 71-381 5-321 (717)
157 PF09304 Cortex-I_coil: Cortex 87.1 11 0.00023 37.4 11.9 37 851-887 39-75 (107)
158 TIGR02680 conserved hypothetic 87.0 1.4E+02 0.0031 41.1 28.4 87 49-135 232-322 (1353)
159 PRK10929 putative mechanosensi 87.0 28 0.0006 46.6 19.1 61 201-268 175-235 (1109)
160 PF10186 Atg14: UV radiation r 86.8 27 0.00059 38.6 16.7 32 856-887 77-108 (302)
161 PF10186 Atg14: UV radiation r 86.8 29 0.00062 38.4 16.8 36 829-864 64-99 (302)
162 PF00769 ERM: Ezrin/radixin/mo 86.8 19 0.00042 40.1 15.4 116 785-900 11-126 (246)
163 PF11559 ADIP: Afadin- and alp 86.8 26 0.00057 35.8 15.3 84 808-891 46-129 (151)
164 PF05010 TACC: Transforming ac 86.6 27 0.00059 38.3 16.0 69 786-854 69-137 (207)
165 PF13514 AAA_27: AAA domain 86.6 1.3E+02 0.0029 40.3 35.7 303 45-379 630-952 (1111)
166 KOG0964 Structural maintenance 86.5 1.2E+02 0.0027 39.9 50.6 120 81-213 162-293 (1200)
167 KOG4593 Mitotic checkpoint pro 86.5 1.1E+02 0.0023 39.1 26.1 162 187-378 442-611 (716)
168 PF13514 AAA_27: AAA domain 86.4 1.3E+02 0.0029 40.3 25.4 37 197-233 894-930 (1111)
169 PF15450 DUF4631: Domain of un 86.4 93 0.002 38.4 25.5 254 81-377 228-491 (531)
170 TIGR03319 YmdA_YtgF conserved 86.3 49 0.0011 40.8 19.8 24 146-169 58-81 (514)
171 KOG4643 Uncharacterized coiled 86.2 1.3E+02 0.0028 39.9 28.2 38 88-125 183-220 (1195)
172 PF01576 Myosin_tail_1: Myosin 86.2 0.22 4.8E-06 63.9 0.0 153 111-268 315-467 (859)
173 PF12072 DUF3552: Domain of un 86.2 54 0.0012 35.4 19.5 131 116-255 30-160 (201)
174 PF05557 MAD: Mitotic checkpoi 86.1 0.22 4.9E-06 62.6 0.0 32 815-846 504-535 (722)
175 PF15233 SYCE1: Synaptonemal c 85.9 24 0.00052 36.1 13.8 80 791-870 4-83 (134)
176 COG1340 Uncharacterized archae 85.5 77 0.0017 36.6 25.6 50 85-134 30-79 (294)
177 KOG1899 LAR transmembrane tyro 85.5 12 0.00025 46.5 13.5 107 789-895 107-216 (861)
178 PF11559 ADIP: Afadin- and alp 85.4 24 0.00051 36.1 14.1 15 874-888 130-144 (151)
179 TIGR02680 conserved hypothetic 85.3 1.7E+02 0.0037 40.4 29.5 10 259-268 973-982 (1353)
180 COG0497 RecN ATPase involved i 85.1 1.1E+02 0.0025 38.2 26.5 123 206-380 262-388 (557)
181 PF05335 DUF745: Protein of un 85.0 33 0.00071 37.1 15.4 104 802-905 62-165 (188)
182 KOG0994 Extracellular matrix g 84.9 1.6E+02 0.0034 39.7 33.9 86 187-279 1600-1685(1758)
183 KOG1937 Uncharacterized conser 84.8 83 0.0018 38.2 19.6 166 68-272 248-413 (521)
184 PF09738 DUF2051: Double stran 84.7 8.8 0.00019 44.2 11.7 89 186-274 78-166 (302)
185 PF09304 Cortex-I_coil: Cortex 84.7 45 0.00097 33.2 14.8 32 788-819 4-35 (107)
186 KOG0995 Centromere-associated 84.4 1.2E+02 0.0026 37.9 33.1 23 40-62 235-257 (581)
187 TIGR01000 bacteriocin_acc bact 84.2 36 0.00077 40.9 17.1 38 925-965 292-329 (457)
188 PF13870 DUF4201: Domain of un 83.8 61 0.0013 34.1 17.2 88 816-903 51-138 (177)
189 PRK10869 recombination and rep 83.4 1.3E+02 0.0028 37.5 24.6 122 207-380 262-387 (553)
190 PF13851 GAS: Growth-arrest sp 83.3 74 0.0016 34.6 26.2 87 191-290 99-189 (201)
191 PF06160 EzrA: Septation ring 83.2 89 0.0019 38.9 20.2 163 787-954 272-437 (560)
192 KOG1853 LIS1-interacting prote 83.0 90 0.0019 35.4 19.7 117 144-270 42-162 (333)
193 PF14073 Cep57_CLD: Centrosome 83.0 50 0.0011 35.6 15.5 139 785-926 10-173 (178)
194 PF04012 PspA_IM30: PspA/IM30 82.8 75 0.0016 34.3 22.3 179 52-271 10-188 (221)
195 KOG0018 Structural maintenance 82.8 1.8E+02 0.004 38.8 27.1 161 50-217 109-287 (1141)
196 PF10168 Nup88: Nuclear pore c 82.7 1.2E+02 0.0026 39.1 21.5 98 804-901 562-670 (717)
197 PRK00106 hypothetical protein; 82.5 1.1E+02 0.0023 38.3 20.2 14 242-255 166-179 (535)
198 TIGR03017 EpsF chain length de 82.3 92 0.002 36.9 19.3 127 100-229 168-298 (444)
199 TIGR00634 recN DNA repair prot 82.2 46 0.00099 41.2 17.3 77 829-905 267-343 (563)
200 PF10146 zf-C4H2: Zinc finger- 82.2 38 0.00083 37.7 14.9 43 863-905 60-102 (230)
201 PF03148 Tektin: Tektin family 81.8 85 0.0018 37.3 18.6 56 131-186 239-294 (384)
202 PRK03947 prefoldin subunit alp 81.7 38 0.00083 34.2 13.7 47 853-899 91-137 (140)
203 KOG0239 Kinesin (KAR3 subfamil 81.6 1E+02 0.0022 39.4 20.1 86 187-272 229-317 (670)
204 KOG0982 Centrosomal protein Nu 81.5 81 0.0018 38.1 17.8 13 6-18 157-170 (502)
205 COG2433 Uncharacterized conser 81.5 19 0.00041 44.8 13.2 98 785-886 414-511 (652)
206 KOG4302 Microtubule-associated 81.2 1.4E+02 0.0031 38.1 20.8 117 135-258 46-177 (660)
207 PF15035 Rootletin: Ciliary ro 81.2 84 0.0018 33.8 17.7 116 162-293 65-180 (182)
208 PF02994 Transposase_22: L1 tr 81.1 3.6 7.9E-05 48.3 7.1 96 808-903 92-191 (370)
209 PF15290 Syntaphilin: Golgi-lo 81.0 32 0.0007 39.2 13.8 99 799-904 67-169 (305)
210 PF05335 DUF745: Protein of un 81.0 89 0.0019 34.0 17.9 101 787-887 68-168 (188)
211 PF14197 Cep57_CLD_2: Centroso 80.9 17 0.00036 33.4 9.7 64 819-882 3-66 (69)
212 PF09728 Taxilin: Myosin-like 80.9 1.2E+02 0.0025 35.3 24.5 77 211-290 207-283 (309)
213 KOG4403 Cell surface glycoprot 80.8 28 0.0006 41.7 13.7 18 155-172 257-274 (575)
214 COG3096 MukB Uncharacterized p 80.5 1.9E+02 0.004 37.4 22.4 156 71-234 365-541 (1480)
215 PF07106 TBPIP: Tat binding pr 80.5 20 0.00044 37.3 11.6 19 698-716 4-24 (169)
216 PRK10246 exonuclease subunit S 80.4 2.2E+02 0.0048 38.2 27.8 30 243-272 855-884 (1047)
217 KOG2391 Vacuolar sorting prote 80.1 21 0.00047 41.6 12.4 75 870-948 253-327 (365)
218 KOG0288 WD40 repeat protein Ti 80.1 42 0.0009 40.2 14.8 78 165-248 35-112 (459)
219 PF09789 DUF2353: Uncharacteri 80.0 51 0.0011 38.4 15.5 84 185-268 72-160 (319)
220 cd00632 Prefoldin_beta Prefold 79.9 45 0.00098 32.3 13.0 43 854-896 61-103 (105)
221 KOG1962 B-cell receptor-associ 79.5 26 0.00056 38.7 12.3 65 840-904 149-213 (216)
222 KOG0018 Structural maintenance 79.5 2.3E+02 0.0051 37.9 54.7 149 784-950 650-800 (1141)
223 PF08826 DMPK_coil: DMPK coile 79.5 18 0.0004 32.5 9.2 58 826-883 2-59 (61)
224 TIGR01000 bacteriocin_acc bact 79.4 39 0.00086 40.5 15.1 18 662-679 88-105 (457)
225 PF13166 AAA_13: AAA domain 79.3 1.4E+02 0.0031 37.6 20.5 23 823-845 324-346 (712)
226 TIGR03017 EpsF chain length de 79.2 1.1E+02 0.0024 36.2 18.6 15 933-947 320-334 (444)
227 PF10498 IFT57: Intra-flagella 78.9 37 0.00079 40.1 14.2 100 799-901 219-318 (359)
228 PF14988 DUF4515: Domain of un 78.9 1.1E+02 0.0023 33.6 22.7 103 112-222 6-108 (206)
229 KOG4360 Uncharacterized coiled 78.5 73 0.0016 39.2 16.4 32 202-233 271-302 (596)
230 PF10481 CENP-F_N: Cenp-F N-te 78.3 44 0.00096 38.1 13.7 114 785-905 17-130 (307)
231 KOG0243 Kinesin-like protein [ 77.7 41 0.00089 44.4 15.1 69 786-854 434-509 (1041)
232 TIGR03319 YmdA_YtgF conserved 77.4 1.9E+02 0.0041 35.9 20.2 13 243-255 146-158 (514)
233 KOG3215 Uncharacterized conser 77.2 1.2E+02 0.0027 33.4 16.4 42 62-103 27-68 (222)
234 COG5283 Phage-related tail pro 77.1 1.1E+02 0.0024 41.1 18.6 156 786-953 22-181 (1213)
235 PF12329 TMF_DNA_bd: TATA elem 77.0 17 0.00037 33.6 8.6 65 158-222 6-70 (74)
236 PF11932 DUF3450: Protein of u 76.6 63 0.0014 35.8 14.7 67 839-905 53-119 (251)
237 PF06818 Fez1: Fez1; InterPro 75.8 1.3E+02 0.0029 33.1 20.4 35 230-264 166-200 (202)
238 PF10146 zf-C4H2: Zinc finger- 75.7 70 0.0015 35.7 14.5 69 821-889 32-100 (230)
239 PF04012 PspA_IM30: PspA/IM30 75.6 1.2E+02 0.0027 32.7 16.7 114 109-237 22-136 (221)
240 PF04582 Reo_sigmaC: Reovirus 75.6 4 8.6E-05 47.2 5.1 122 785-906 34-155 (326)
241 PRK09841 cryptic autophosphory 75.4 46 0.00099 42.5 14.8 25 874-898 374-398 (726)
242 PF14712 Snapin_Pallidin: Snap 75.4 36 0.00078 31.9 10.6 78 819-896 12-90 (92)
243 TIGR02338 gimC_beta prefoldin, 75.3 58 0.0012 31.9 12.4 40 855-894 66-105 (110)
244 PF15397 DUF4618: Domain of un 75.2 1.6E+02 0.0034 33.7 20.3 78 45-126 14-97 (258)
245 PRK03947 prefoldin subunit alp 75.2 51 0.0011 33.2 12.4 38 867-904 98-135 (140)
246 PF11932 DUF3450: Protein of u 75.0 1.3E+02 0.0029 33.3 16.6 53 805-857 40-92 (251)
247 KOG0249 LAR-interacting protei 74.7 1.8E+02 0.0038 37.4 18.6 190 145-378 58-258 (916)
248 KOG4787 Uncharacterized conser 74.5 2.4E+02 0.0052 35.5 20.7 92 203-301 463-568 (852)
249 KOG4809 Rab6 GTPase-interactin 73.8 1.6E+02 0.0034 36.8 17.5 65 96-161 331-395 (654)
250 PF05010 TACC: Transforming ac 73.7 1.5E+02 0.0032 32.7 23.2 77 47-126 23-99 (207)
251 PRK15422 septal ring assembly 73.6 39 0.00085 32.0 10.0 55 821-875 18-72 (79)
252 KOG0982 Centrosomal protein Nu 73.6 87 0.0019 37.8 15.1 111 795-905 299-417 (502)
253 PF03962 Mnd1: Mnd1 family; I 73.3 25 0.00054 37.8 10.1 83 201-291 64-147 (188)
254 PRK10698 phage shock protein P 73.3 1.5E+02 0.0033 32.7 18.9 63 201-266 122-184 (222)
255 PF10212 TTKRSYEDQ: Predicted 73.3 53 0.0011 40.5 13.8 58 791-848 418-482 (518)
256 KOG0804 Cytoplasmic Zn-finger 73.2 1.3E+02 0.0028 36.6 16.5 46 85-130 357-402 (493)
257 PF15254 CCDC14: Coiled-coil d 73.2 83 0.0018 40.5 15.6 113 787-902 428-540 (861)
258 KOG4807 F-actin binding protei 72.7 2.2E+02 0.0048 34.2 27.2 66 46-114 244-323 (593)
259 KOG4809 Rab6 GTPase-interactin 72.7 2.6E+02 0.0056 35.0 23.2 54 234-290 521-574 (654)
260 PF12072 DUF3552: Domain of un 72.5 1E+02 0.0023 33.3 14.7 19 823-841 73-91 (201)
261 TIGR02977 phageshock_pspA phag 72.3 1.5E+02 0.0034 32.3 19.1 61 202-265 123-183 (219)
262 PF14992 TMCO5: TMCO5 family 72.3 96 0.0021 35.7 14.7 115 152-273 58-178 (280)
263 COG1842 PspA Phage shock prote 72.3 1.7E+02 0.0036 32.7 21.7 27 244-270 162-188 (225)
264 PRK09343 prefoldin subunit bet 71.8 1E+02 0.0022 31.0 13.3 36 868-903 76-111 (121)
265 PF09738 DUF2051: Double stran 71.2 63 0.0014 37.4 13.3 55 797-851 81-135 (302)
266 PF14073 Cep57_CLD: Centrosome 71.2 1.5E+02 0.0033 32.0 15.0 77 194-270 59-135 (178)
267 PF06818 Fez1: Fez1; InterPro 71.1 61 0.0013 35.6 12.4 36 852-887 69-104 (202)
268 PF05483 SCP-1: Synaptonemal c 70.7 3.1E+02 0.0068 35.2 35.7 108 145-252 547-654 (786)
269 COG4477 EzrA Negative regulato 69.9 2.9E+02 0.0064 34.5 23.4 48 242-289 404-453 (570)
270 PF10267 Tmemb_cc2: Predicted 69.6 97 0.0021 37.2 14.6 58 788-848 214-271 (395)
271 KOG1937 Uncharacterized conser 69.4 1.1E+02 0.0024 37.2 14.8 92 856-948 332-427 (521)
272 PRK12704 phosphodiesterase; Pr 69.1 3E+02 0.0065 34.3 21.4 9 535-543 398-406 (520)
273 TIGR02338 gimC_beta prefoldin, 68.5 70 0.0015 31.3 11.2 37 866-902 70-106 (110)
274 PF05266 DUF724: Protein of un 68.5 92 0.002 33.8 13.0 13 813-825 109-121 (190)
275 PF07989 Microtub_assoc: Micro 68.1 28 0.00061 32.4 7.9 65 203-273 4-68 (75)
276 KOG4677 Golgi integral membran 68.1 2.9E+02 0.0064 33.8 19.4 67 223-289 305-375 (554)
277 TIGR02231 conserved hypothetic 67.9 43 0.00093 41.0 11.8 32 785-816 70-101 (525)
278 PF12777 MT: Microtubule-bindi 67.8 25 0.00055 40.8 9.4 23 785-807 220-242 (344)
279 PRK10869 recombination and rep 67.4 1.8E+02 0.004 36.2 17.0 89 864-954 297-390 (553)
280 PF08702 Fib_alpha: Fibrinogen 67.1 1.5E+02 0.0033 30.9 13.8 38 866-903 93-130 (146)
281 PF02050 FliJ: Flagellar FliJ 66.6 1.1E+02 0.0025 28.5 15.6 20 800-819 12-31 (123)
282 PRK10476 multidrug resistance 66.6 1.9E+02 0.0041 33.3 16.1 54 794-847 87-140 (346)
283 PF14197 Cep57_CLD_2: Centroso 66.0 52 0.0011 30.2 9.0 65 197-268 3-67 (69)
284 PF05384 DegS: Sensor protein 65.9 1.9E+02 0.004 30.8 15.5 108 797-904 10-125 (159)
285 TIGR01010 BexC_CtrB_KpsE polys 65.6 73 0.0016 37.0 12.6 22 655-676 130-151 (362)
286 PF11180 DUF2968: Protein of u 65.5 1.3E+02 0.0027 33.0 13.2 89 814-902 98-186 (192)
287 PRK09841 cryptic autophosphory 65.1 83 0.0018 40.3 13.9 120 785-904 273-397 (726)
288 PF03148 Tektin: Tektin family 65.0 1.5E+02 0.0032 35.3 15.1 91 811-901 262-362 (384)
289 PF05384 DegS: Sensor protein 64.9 2E+02 0.0042 30.6 16.4 37 787-823 28-64 (159)
290 PF12777 MT: Microtubule-bindi 64.9 32 0.0007 40.0 9.5 34 854-887 268-301 (344)
291 KOG0244 Kinesin-like protein [ 64.8 3.5E+02 0.0075 35.9 18.8 123 115-270 472-594 (913)
292 KOG0288 WD40 repeat protein Ti 64.7 1.3E+02 0.0028 36.4 14.0 51 821-871 13-63 (459)
293 COG5185 HEC1 Protein involved 64.7 3.5E+02 0.0075 33.4 18.2 76 815-890 296-371 (622)
294 PF05483 SCP-1: Synaptonemal c 64.4 4.1E+02 0.009 34.2 34.2 127 86-212 286-418 (786)
295 PF10234 Cluap1: Clusterin-ass 64.1 1.1E+02 0.0024 35.0 13.0 69 791-859 167-235 (267)
296 TIGR00998 8a0101 efflux pump m 64.1 1.6E+02 0.0036 33.3 14.8 55 794-848 81-135 (334)
297 PLN03188 kinesin-12 family pro 63.6 5.5E+02 0.012 35.4 22.4 45 82-126 1054-1098(1320)
298 PF15456 Uds1: Up-regulated Du 63.4 1E+02 0.0022 31.3 11.5 40 89-129 22-61 (124)
299 PF15066 CAGE1: Cancer-associa 62.8 3.6E+02 0.0079 33.2 17.3 136 786-933 376-522 (527)
300 COG4913 Uncharacterized protei 62.7 3.6E+02 0.0077 35.1 17.7 20 153-172 670-689 (1104)
301 PLN02939 transferase, transfer 62.6 5.2E+02 0.011 34.8 24.4 116 90-228 157-279 (977)
302 PRK01156 chromosome segregatio 62.1 4.8E+02 0.01 34.2 57.4 45 857-901 675-719 (895)
303 PF10205 KLRAQ: Predicted coil 61.8 68 0.0015 31.8 9.5 64 167-230 8-71 (102)
304 KOG0979 Structural maintenance 61.4 5.4E+02 0.012 34.6 22.9 28 786-813 773-800 (1072)
305 COG0497 RecN ATPase involved i 61.3 1.4E+02 0.0029 37.5 14.1 177 785-965 207-400 (557)
306 PF10267 Tmemb_cc2: Predicted 60.8 2.4E+02 0.0053 34.0 15.7 78 801-881 213-294 (395)
307 KOG4360 Uncharacterized coiled 60.7 1.9E+02 0.0041 35.9 14.7 101 805-905 203-303 (596)
308 KOG4572 Predicted DNA-binding 60.7 3.3E+02 0.0071 35.7 17.0 105 157-266 929-1034(1424)
309 KOG2751 Beclin-like protein [S 60.5 1.4E+02 0.0031 36.2 13.5 19 225-243 244-262 (447)
310 PRK11519 tyrosine kinase; Prov 59.9 1.4E+02 0.0031 38.1 14.7 25 873-897 373-397 (719)
311 PF06785 UPF0242: Uncharacteri 59.4 1.9E+02 0.0042 34.1 13.9 15 881-895 198-212 (401)
312 COG0419 SbcC ATPase involved i 58.8 5.6E+02 0.012 33.9 39.2 14 83-96 233-246 (908)
313 COG1382 GimC Prefoldin, chaper 58.6 2E+02 0.0043 29.4 12.3 37 867-903 74-110 (119)
314 KOG4603 TBP-1 interacting prot 58.5 1.9E+02 0.0041 31.3 12.6 65 795-859 81-147 (201)
315 PF05700 BCAS2: Breast carcino 58.5 2.9E+02 0.0062 30.4 15.3 37 869-905 174-210 (221)
316 PRK00409 recombination and DNA 58.4 1.5E+02 0.0032 38.6 14.5 75 185-259 520-595 (782)
317 KOG0962 DNA repair protein RAD 58.2 6.8E+02 0.015 34.7 29.4 268 80-379 179-447 (1294)
318 TIGR02231 conserved hypothetic 57.7 90 0.002 38.2 12.0 34 871-904 139-172 (525)
319 cd00632 Prefoldin_beta Prefold 57.6 1.6E+02 0.0036 28.4 11.5 37 866-902 66-102 (105)
320 TIGR01010 BexC_CtrB_KpsE polys 57.6 1.5E+02 0.0032 34.5 13.2 19 850-868 215-233 (362)
321 PF08826 DMPK_coil: DMPK coile 57.2 60 0.0013 29.3 7.6 49 180-232 10-58 (61)
322 PF04871 Uso1_p115_C: Uso1 / p 57.2 2.4E+02 0.0051 29.1 14.4 34 873-906 80-113 (136)
323 KOG0999 Microtubule-associated 57.1 5E+02 0.011 32.8 19.9 129 104-250 101-238 (772)
324 PF15450 DUF4631: Domain of un 56.9 4.9E+02 0.011 32.6 24.4 65 210-278 452-516 (531)
325 PF12329 TMF_DNA_bd: TATA elem 56.8 1.4E+02 0.003 27.8 10.2 35 818-852 9-43 (74)
326 KOG2751 Beclin-like protein [S 56.8 1.3E+02 0.0028 36.5 12.3 116 788-905 145-267 (447)
327 PF13805 Pil1: Eisosome compon 56.4 3.7E+02 0.0079 31.0 17.5 20 667-686 53-72 (271)
328 PRK11519 tyrosine kinase; Prov 56.3 1.4E+02 0.003 38.3 13.7 120 785-904 273-397 (719)
329 PF05278 PEARLI-4: Arabidopsis 56.2 1.9E+02 0.0041 33.2 13.1 12 533-544 98-109 (269)
330 COG3074 Uncharacterized protei 55.9 1.4E+02 0.0031 27.8 9.8 24 852-875 49-72 (79)
331 PF03962 Mnd1: Mnd1 family; I 55.9 2.4E+02 0.0053 30.4 13.5 70 200-279 104-173 (188)
332 PF10805 DUF2730: Protein of u 55.8 84 0.0018 30.9 9.2 52 803-854 38-91 (106)
333 COG4477 EzrA Negative regulato 55.7 5.2E+02 0.011 32.5 27.2 275 84-383 99-398 (570)
334 KOG1899 LAR transmembrane tyro 55.6 5.2E+02 0.011 33.1 17.3 67 101-172 130-196 (861)
335 COG1730 GIM5 Predicted prefold 54.9 2.5E+02 0.0055 29.4 12.9 40 865-904 96-135 (145)
336 KOG0249 LAR-interacting protei 54.9 3.8E+02 0.0082 34.7 16.2 16 153-168 166-181 (916)
337 KOG1853 LIS1-interacting prote 54.9 3.8E+02 0.0082 30.7 20.1 44 70-116 25-72 (333)
338 COG5185 HEC1 Protein involved 54.8 5.1E+02 0.011 32.2 20.0 34 248-281 400-433 (622)
339 COG3206 GumC Uncharacterized p 54.7 1.8E+02 0.0038 35.1 13.6 112 788-899 287-402 (458)
340 PRK15422 septal ring assembly 54.7 1.1E+02 0.0023 29.1 9.1 63 213-275 11-73 (79)
341 PF02994 Transposase_22: L1 tr 54.6 24 0.00053 41.6 6.3 94 812-905 89-186 (370)
342 PF05266 DUF724: Protein of un 54.4 2.4E+02 0.0052 30.7 13.1 72 196-274 114-185 (190)
343 PRK03598 putative efflux pump 54.4 3.8E+02 0.0083 30.6 15.8 21 825-845 111-131 (331)
344 KOG3647 Predicted coiled-coil 54.3 4E+02 0.0086 30.8 15.3 67 201-267 114-180 (338)
345 PF05377 FlaC_arch: Flagella a 54.1 41 0.0009 29.9 6.0 45 812-856 5-49 (55)
346 PF13870 DUF4201: Domain of un 53.7 2.9E+02 0.0063 29.1 21.8 42 861-902 75-116 (177)
347 KOG0244 Kinesin-like protein [ 53.6 1.5E+02 0.0032 39.0 13.0 95 150-268 467-561 (913)
348 COG1382 GimC Prefoldin, chaper 53.6 2.6E+02 0.0056 28.6 12.2 26 801-826 14-39 (119)
349 PRK00106 hypothetical protein; 53.3 5.6E+02 0.012 32.2 24.2 12 620-631 460-471 (535)
350 KOG4302 Microtubule-associated 53.1 2.3E+02 0.0049 36.3 14.4 115 787-901 55-198 (660)
351 PF07889 DUF1664: Protein of u 53.1 2.5E+02 0.0055 28.8 12.2 13 797-809 40-52 (126)
352 PF14362 DUF4407: Domain of un 53.0 3E+02 0.0066 31.2 14.5 39 812-850 133-171 (301)
353 COG3524 KpsE Capsule polysacch 53.0 4.2E+02 0.0092 31.2 15.1 64 106-172 182-245 (372)
354 PF04582 Reo_sigmaC: Reovirus 52.5 23 0.0005 41.2 5.5 100 796-902 59-158 (326)
355 PF01920 Prefoldin_2: Prefoldi 52.1 1.6E+02 0.0034 27.8 10.3 35 867-901 66-100 (106)
356 KOG2264 Exostosin EXT1L [Signa 52.1 55 0.0012 40.6 8.5 45 800-844 100-144 (907)
357 PF07889 DUF1664: Protein of u 52.0 2.8E+02 0.006 28.5 12.3 10 796-805 46-55 (126)
358 PF11180 DUF2968: Protein of u 51.9 3E+02 0.0064 30.3 13.1 87 793-879 98-184 (192)
359 PF05700 BCAS2: Breast carcino 51.8 3.7E+02 0.0079 29.6 15.4 67 202-271 139-205 (221)
360 KOG1962 B-cell receptor-associ 51.7 1.4E+02 0.003 33.3 10.9 61 211-271 149-209 (216)
361 PF07989 Microtub_assoc: Micro 51.3 1.2E+02 0.0026 28.4 8.9 70 816-892 2-72 (75)
362 COG4372 Uncharacterized protei 50.9 5.3E+02 0.011 31.3 26.8 123 85-216 119-241 (499)
363 COG1842 PspA Phage shock prote 50.7 4E+02 0.0087 29.8 17.8 44 790-833 28-71 (225)
364 PF08172 CASP_C: CASP C termin 50.6 2E+02 0.0043 32.5 12.2 46 852-897 89-134 (248)
365 TIGR02132 phaR_Bmeg polyhydrox 50.5 1.6E+02 0.0035 31.9 10.7 87 103-208 79-166 (189)
366 KOG0993 Rab5 GTPase effector R 49.9 3.3E+02 0.0071 33.1 14.0 78 875-952 105-190 (542)
367 PF14389 Lzipper-MIP1: Leucine 49.7 28 0.0006 33.2 4.7 34 149-182 7-40 (88)
368 KOG2991 Splicing regulator [RN 49.4 4.6E+02 0.01 30.1 17.9 177 84-290 88-275 (330)
369 KOG1265 Phospholipase C [Lipid 49.0 5.1E+02 0.011 34.5 16.2 71 66-143 1057-1136(1189)
370 KOG2196 Nuclear porin [Nuclear 48.8 3.9E+02 0.0084 30.4 13.7 48 785-832 112-159 (254)
371 PF10046 BLOC1_2: Biogenesis o 48.4 2.7E+02 0.0058 27.0 12.3 35 866-900 62-96 (99)
372 PF10226 DUF2216: Uncharacteri 48.3 3.5E+02 0.0075 29.8 12.9 103 160-265 19-125 (195)
373 PF05622 HOOK: HOOK protein; 48.0 6 0.00013 50.1 0.0 19 931-949 339-357 (713)
374 PF10805 DUF2730: Protein of u 47.7 1.1E+02 0.0023 30.2 8.5 63 785-847 34-98 (106)
375 PF06120 Phage_HK97_TLTM: Tail 47.5 5.2E+02 0.011 30.2 17.6 116 813-936 73-192 (301)
376 PF02403 Seryl_tRNA_N: Seryl-t 47.4 1.6E+02 0.0036 28.3 9.7 24 818-841 33-56 (108)
377 PRK09343 prefoldin subunit bet 47.4 3.1E+02 0.0067 27.6 13.0 47 854-900 69-115 (121)
378 PF12761 End3: Actin cytoskele 47.3 96 0.0021 34.0 8.8 34 326-359 161-194 (195)
379 PRK00409 recombination and DNA 47.1 4.4E+02 0.0095 34.5 16.1 30 244-273 147-176 (782)
380 TIGR00998 8a0101 efflux pump m 46.8 4.2E+02 0.009 30.0 14.4 18 788-805 82-99 (334)
381 KOG0972 Huntingtin interacting 46.7 2.4E+02 0.0051 32.9 11.9 102 787-905 228-329 (384)
382 PF09755 DUF2046: Uncharacteri 46.7 5.5E+02 0.012 30.2 28.7 109 91-209 86-202 (310)
383 PF04102 SlyX: SlyX; InterPro 46.3 99 0.0021 28.2 7.5 37 815-851 12-48 (69)
384 TIGR02449 conserved hypothetic 46.2 1.5E+02 0.0032 27.3 8.4 56 821-876 7-62 (65)
385 PF05546 She9_MDM33: She9 / Md 46.1 4.6E+02 0.01 29.2 14.3 54 821-874 32-85 (207)
386 PF08172 CASP_C: CASP C termin 45.8 2.7E+02 0.0058 31.6 12.3 49 824-872 82-130 (248)
387 KOG4603 TBP-1 interacting prot 45.8 1.4E+02 0.003 32.3 9.3 27 821-847 86-112 (201)
388 KOG3647 Predicted coiled-coil 45.7 4.4E+02 0.0096 30.4 13.7 70 791-860 110-179 (338)
389 PF13863 DUF4200: Domain of un 45.6 3.1E+02 0.0066 27.0 15.9 38 867-904 71-108 (126)
390 KOG3501 Molecular chaperone Pr 45.6 3.3E+02 0.0072 27.4 13.5 50 850-899 61-110 (114)
391 TIGR01069 mutS2 MutS2 family p 45.5 3.1E+02 0.0068 35.7 14.4 72 185-256 515-587 (771)
392 PF07445 priB_priC: Primosomal 44.8 4.2E+02 0.0091 28.3 14.3 67 872-949 104-170 (173)
393 KOG0240 Kinesin (SMY1 subfamil 44.6 7.7E+02 0.017 31.3 19.6 37 84-120 336-372 (607)
394 KOG4637 Adaptor for phosphoino 44.6 1.6E+02 0.0036 35.1 10.5 28 923-950 215-249 (464)
395 TIGR01069 mutS2 MutS2 family p 44.5 4.6E+02 0.01 34.2 15.7 30 244-273 142-171 (771)
396 KOG0163 Myosin class VI heavy 44.4 7.9E+02 0.017 32.3 16.6 44 59-103 870-917 (1259)
397 PLN03229 acetyl-coenzyme A car 44.1 4.5E+02 0.0098 34.3 14.9 37 867-903 670-707 (762)
398 PRK02119 hypothetical protein; 44.1 1.1E+02 0.0024 28.4 7.5 28 820-847 22-49 (73)
399 PF06810 Phage_GP20: Phage min 43.9 1.2E+02 0.0025 31.9 8.6 23 940-963 118-140 (155)
400 PF10046 BLOC1_2: Biogenesis o 43.8 3.1E+02 0.0068 26.6 12.6 30 865-894 68-97 (99)
401 PF07798 DUF1640: Protein of u 43.8 4.2E+02 0.0092 28.1 16.0 43 805-847 56-99 (177)
402 PRK10636 putative ABC transpor 43.7 80 0.0017 39.7 8.8 35 871-905 599-633 (638)
403 PF14643 DUF4455: Domain of un 43.7 7E+02 0.015 30.6 18.0 98 111-212 320-417 (473)
404 PRK13729 conjugal transfer pil 43.5 71 0.0015 39.1 7.8 27 814-840 69-95 (475)
405 PF15290 Syntaphilin: Golgi-lo 43.4 3.3E+02 0.0072 31.6 12.4 92 788-879 70-168 (305)
406 PF02601 Exonuc_VII_L: Exonucl 43.4 5.5E+02 0.012 29.3 16.6 49 75-123 136-185 (319)
407 PRK13729 conjugal transfer pil 43.2 71 0.0015 39.1 7.7 41 808-848 70-110 (475)
408 PRK10361 DNA recombination pro 43.1 7.5E+02 0.016 30.8 22.3 20 205-224 139-158 (475)
409 TIGR03752 conj_TIGR03752 integ 43.1 1.9E+02 0.0041 35.6 11.2 84 807-903 59-142 (472)
410 PF15456 Uds1: Up-regulated Du 43.1 2.7E+02 0.0059 28.4 10.7 34 785-819 21-54 (124)
411 PF13166 AAA_13: AAA domain 43.0 8E+02 0.017 31.1 23.6 43 249-294 432-474 (712)
412 PF04108 APG17: Autophagy prot 42.8 4.4E+02 0.0096 31.7 14.3 104 802-905 278-381 (412)
413 COG3352 FlaC Putative archaeal 42.8 1.8E+02 0.0038 30.9 9.4 94 785-905 43-136 (157)
414 PF04102 SlyX: SlyX; InterPro 42.7 1.1E+02 0.0023 27.9 7.1 47 792-838 3-49 (69)
415 PF08581 Tup_N: Tup N-terminal 42.6 3E+02 0.0066 26.1 11.1 38 814-851 25-62 (79)
416 PRK04325 hypothetical protein; 42.3 1.3E+02 0.0029 27.9 7.7 43 809-851 11-53 (74)
417 PF07200 Mod_r: Modifier of ru 41.9 3.6E+02 0.0078 27.5 11.7 84 794-878 28-111 (150)
418 PRK12705 hypothetical protein; 41.8 5E+02 0.011 32.4 14.7 106 789-895 52-157 (508)
419 PF05103 DivIVA: DivIVA protei 41.6 17 0.00037 35.7 2.1 29 98-126 41-69 (131)
420 PRK04406 hypothetical protein; 41.4 1.6E+02 0.0034 27.6 8.1 22 822-843 26-47 (75)
421 COG3096 MukB Uncharacterized p 40.9 5.9E+02 0.013 33.3 14.8 54 785-838 347-407 (1480)
422 PF09731 Mitofilin: Mitochondr 40.9 8.1E+02 0.018 30.5 24.5 42 248-291 398-439 (582)
423 PRK00846 hypothetical protein; 40.8 1.8E+02 0.004 27.5 8.4 45 808-852 14-58 (77)
424 PF06428 Sec2p: GDP/GTP exchan 40.6 43 0.00094 32.9 4.6 46 860-905 41-86 (100)
425 PF06248 Zw10: Centromere/kine 40.6 7.3E+02 0.016 31.1 16.2 40 862-902 75-114 (593)
426 PF14988 DUF4515: Domain of un 40.2 5.4E+02 0.012 28.3 22.5 40 196-235 160-199 (206)
427 COG4694 Uncharacterized protei 40.1 4.2E+02 0.0092 33.5 13.4 79 86-172 389-467 (758)
428 KOG0978 E3 ubiquitin ligase in 40.0 9.7E+02 0.021 31.2 31.0 76 198-273 467-542 (698)
429 COG3352 FlaC Putative archaeal 39.8 2.4E+02 0.0051 30.0 9.8 10 892-901 116-125 (157)
430 KOG1103 Predicted coiled-coil 39.8 7.3E+02 0.016 29.7 22.5 18 251-268 276-293 (561)
431 PF07851 TMPIT: TMPIT-like pro 39.4 1.8E+02 0.0039 34.3 9.9 26 915-946 114-139 (330)
432 PRK00846 hypothetical protein; 38.6 1.4E+02 0.0031 28.2 7.3 43 791-833 11-53 (77)
433 PF06810 Phage_GP20: Phage min 38.4 2.4E+02 0.0053 29.6 9.9 6 933-938 125-130 (155)
434 PF05529 Bap31: B-cell recepto 38.4 2.3E+02 0.005 30.1 10.0 26 872-897 163-188 (192)
435 PF10211 Ax_dynein_light: Axon 38.2 5.5E+02 0.012 27.8 15.1 34 823-856 122-155 (189)
436 PF08657 DASH_Spc34: DASH comp 38.2 57 0.0012 37.0 5.7 26 872-897 234-259 (259)
437 PRK11578 macrolide transporter 38.0 3.4E+02 0.0074 31.6 12.2 20 885-904 166-185 (370)
438 PF13094 CENP-Q: CENP-Q, a CEN 38.0 2.1E+02 0.0045 29.7 9.4 100 844-948 22-132 (160)
439 PF06785 UPF0242: Uncharacteri 37.7 7.8E+02 0.017 29.4 18.5 109 154-275 110-221 (401)
440 PF05278 PEARLI-4: Arabidopsis 37.5 7E+02 0.015 28.8 15.0 26 77-102 154-179 (269)
441 PF15035 Rootletin: Ciliary ro 37.4 2.9E+02 0.0062 29.9 10.5 44 827-870 73-116 (182)
442 PF08581 Tup_N: Tup N-terminal 37.3 3.7E+02 0.008 25.5 11.0 47 852-901 28-74 (79)
443 PF08598 Sds3: Sds3-like; Int 37.2 47 0.001 35.4 4.7 77 79-164 2-86 (205)
444 PF15294 Leu_zip: Leucine zipp 37.1 3.8E+02 0.0082 31.0 11.8 29 203-231 219-247 (278)
445 PRK00295 hypothetical protein; 37.1 1.7E+02 0.0036 26.8 7.4 33 815-847 13-45 (68)
446 TIGR03495 phage_LysB phage lys 37.1 3.4E+02 0.0073 28.3 10.4 75 829-903 20-94 (135)
447 COG4985 ABC-type phosphate tra 37.1 2.9E+02 0.0063 31.3 10.5 24 856-879 221-244 (289)
448 KOG4438 Centromere-associated 37.0 8.8E+02 0.019 29.8 17.5 159 786-946 145-321 (446)
449 TIGR00293 prefoldin, archaeal 36.9 4.3E+02 0.0092 26.1 11.7 26 874-899 97-122 (126)
450 TIGR02971 heterocyst_DevB ABC 36.8 6.8E+02 0.015 28.4 14.4 117 787-903 63-205 (327)
451 PRK00736 hypothetical protein; 36.6 1.6E+02 0.0034 27.0 7.2 35 814-848 12-46 (68)
452 PRK04406 hypothetical protein; 36.6 1.7E+02 0.0037 27.3 7.5 20 791-810 9-28 (75)
453 KOG4657 Uncharacterized conser 36.4 6.8E+02 0.015 28.3 18.0 22 82-103 15-36 (246)
454 TIGR00293 prefoldin, archaeal 36.1 4.4E+02 0.0095 26.0 11.5 29 861-889 91-119 (126)
455 PF06156 DUF972: Protein of un 36.0 1.5E+02 0.0032 29.5 7.4 33 809-841 10-42 (107)
456 PF01920 Prefoldin_2: Prefoldi 35.9 3.8E+02 0.0082 25.2 12.2 31 861-891 67-97 (106)
457 KOG2264 Exostosin EXT1L [Signa 35.9 2E+02 0.0044 36.0 9.9 25 812-836 98-122 (907)
458 PF14992 TMCO5: TMCO5 family 35.8 4.9E+02 0.011 30.2 12.4 58 140-201 22-79 (280)
459 COG2900 SlyX Uncharacterized p 35.8 1.9E+02 0.0042 27.1 7.6 49 833-881 6-54 (72)
460 PRK02793 phi X174 lysis protei 35.6 1.8E+02 0.0039 26.9 7.5 51 854-904 6-56 (72)
461 TIGR02132 phaR_Bmeg polyhydrox 35.2 3.7E+02 0.0079 29.4 10.5 35 851-885 109-143 (189)
462 PRK00295 hypothetical protein; 35.0 2E+02 0.0044 26.3 7.6 20 794-813 6-25 (68)
463 TIGR02449 conserved hypothetic 34.8 1.6E+02 0.0034 27.1 6.8 48 196-243 4-51 (65)
464 PF10304 DUF2411: Domain of un 34.7 28 0.00061 28.1 1.9 23 62-84 14-36 (36)
465 PF15294 Leu_zip: Leucine zipp 34.6 7.9E+02 0.017 28.5 19.4 34 91-124 62-96 (278)
466 cd00584 Prefoldin_alpha Prefol 34.5 4.7E+02 0.01 25.9 12.3 35 859-893 90-124 (129)
467 KOG0972 Huntingtin interacting 34.3 7.6E+02 0.016 29.0 13.4 79 146-234 230-308 (384)
468 COG4717 Uncharacterized conser 34.1 1.3E+03 0.028 30.9 23.0 90 75-164 550-641 (984)
469 PF15188 CCDC-167: Coiled-coil 34.0 1.5E+02 0.0032 28.6 6.8 56 792-847 4-62 (85)
470 PRK00286 xseA exodeoxyribonucl 33.8 9.1E+02 0.02 29.0 16.8 132 787-954 261-395 (438)
471 PRK00736 hypothetical protein; 33.6 1.9E+02 0.0042 26.4 7.3 49 856-904 5-53 (68)
472 PF04912 Dynamitin: Dynamitin 33.5 8.9E+02 0.019 28.8 15.5 65 154-219 292-356 (388)
473 PF06428 Sec2p: GDP/GTP exchan 33.4 67 0.0014 31.6 4.6 19 818-836 12-30 (100)
474 PF12761 End3: Actin cytoskele 33.2 3.8E+02 0.0081 29.6 10.5 25 787-811 97-121 (195)
475 KOG2391 Vacuolar sorting prote 33.1 7.9E+02 0.017 29.4 13.6 56 785-840 224-279 (365)
476 KOG0240 Kinesin (SMY1 subfamil 33.1 1.1E+03 0.025 29.9 17.8 21 933-953 581-601 (607)
477 KOG0239 Kinesin (KAR3 subfamil 33.0 1.2E+03 0.026 30.2 19.4 97 196-301 224-323 (670)
478 PF00170 bZIP_1: bZIP transcri 32.6 1.1E+02 0.0023 27.1 5.4 21 202-222 43-63 (64)
479 KOG3691 Exocyst complex subuni 32.1 1.4E+03 0.03 30.7 17.1 63 67-143 67-129 (982)
480 PF10211 Ax_dynein_light: Axon 32.1 6.8E+02 0.015 27.1 13.8 8 669-676 56-63 (189)
481 PF14282 FlxA: FlxA-like prote 32.1 2.1E+02 0.0045 28.2 7.8 16 788-803 21-36 (106)
482 PF03904 DUF334: Domain of unk 32.0 4.7E+02 0.01 29.5 11.1 121 786-906 5-135 (230)
483 PRK04325 hypothetical protein; 32.0 2.2E+02 0.0048 26.4 7.5 49 856-904 9-57 (74)
484 COG4985 ABC-type phosphate tra 31.9 2.5E+02 0.0053 31.8 8.9 28 196-223 218-245 (289)
485 PF02841 GBP_C: Guanylate-bind 31.8 8.2E+02 0.018 27.9 18.7 167 49-226 128-297 (297)
486 PF03961 DUF342: Protein of un 31.7 1.7E+02 0.0038 35.2 8.7 77 804-881 331-407 (451)
487 PF06632 XRCC4: DNA double-str 31.6 5.9E+02 0.013 30.2 12.6 13 689-701 62-74 (342)
488 PF03961 DUF342: Protein of un 31.6 2E+02 0.0044 34.7 9.3 78 797-875 331-408 (451)
489 PLN03188 kinesin-12 family pro 31.3 8.4E+02 0.018 33.8 14.9 133 803-935 1068-1254(1320)
490 PF06632 XRCC4: DNA double-str 31.2 8.7E+02 0.019 28.9 13.9 94 789-888 126-219 (342)
491 PF05008 V-SNARE: Vesicle tran 31.0 4.1E+02 0.0088 24.1 9.1 78 858-948 1-78 (79)
492 PF00804 Syntaxin: Syntaxin; 30.9 2.6E+02 0.0056 25.7 7.9 96 248-372 7-102 (103)
493 PF08702 Fib_alpha: Fibrinogen 30.8 6.4E+02 0.014 26.3 14.3 96 803-900 32-127 (146)
494 PF03670 UPF0184: Uncharacteri 30.8 1.8E+02 0.004 27.9 6.8 50 88-137 25-74 (83)
495 TIGR03495 phage_LysB phage lys 30.6 4.7E+02 0.01 27.2 10.3 84 193-276 20-103 (135)
496 cd07674 F-BAR_FCHO1 The F-BAR 30.5 8.2E+02 0.018 27.5 18.5 146 47-200 63-237 (261)
497 PF14915 CCDC144C: CCDC144C pr 30.4 9.5E+02 0.021 28.2 28.7 227 33-272 31-266 (305)
498 PF07851 TMPIT: TMPIT-like pro 30.2 4.4E+02 0.0095 31.2 11.2 81 86-171 1-89 (330)
499 PF05064 Nsp1_C: Nsp1-like C-t 30.2 38 0.00083 33.7 2.4 87 113-218 18-104 (116)
500 TIGR03545 conserved hypothetic 30.1 4.3E+02 0.0093 33.3 11.8 92 43-164 167-258 (555)
No 1
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=100.00 E-value=1.1e-176 Score=1569.06 Aligned_cols=769 Identities=49% Similarity=0.645 Sum_probs=683.2
Q ss_pred chhHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 001390 66 KDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKAS 145 (1088)
Q Consensus 66 kd~lvkqh~kvaeeav~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks 145 (1088)
||+|||||+|||||||+||||||+|+.+||+||+++.+|++++++||+|||||||+||+|||++||||||+||+++.+++
T Consensus 1 k~~lvkqh~kvaeeav~gwekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s 80 (769)
T PF05911_consen 1 KDDLVKQHAKVAEEAVSGWEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKS 80 (769)
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHH
Q 001390 146 MEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVL 225 (1088)
Q Consensus 146 ~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vl 225 (1088)
.||++++.+||.+|.+++++|+++++||++|+++|++|+++|.+|++.+++++++|..|+++|+++||+|++||||+||+
T Consensus 81 ~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~ 160 (769)
T PF05911_consen 81 KEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVL 160 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhhHHHHhhcCCChhhhhccCCC
Q 001390 226 GKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRESPETRRKRLNS 305 (1088)
Q Consensus 226 qkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk~lpgpaa~a~mk~eve~~~~~~~~~r~~~~~~ 305 (1088)
++||+||++||+|++|+||+|+|||+|++|||++|||||||||+||||||||||||||||+||+++|++++++||||+++
T Consensus 161 ~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~r~~~~ 240 (769)
T PF05911_consen 161 SKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESLGRDSGENRRRRSPS 240 (769)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHhccccccccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCcccccCCCCCCCCCcchhhhHHHHHHHhHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhHHHHHHHHhhccccc
Q 001390 306 SPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQIEELSKGRKI 385 (1088)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eeEnk~lke~L~~k~~ELq~sr~~~a~t~skL~~~e~q~~~~s~~~~~ 385 (1088)
++++++ . ++...+..+.+.++|||+||++||||||||||+|++||+||||||+|||+|||||++||+|+ +.+ ++++
T Consensus 241 ~~~~~~-~-~~~~~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql-~~~-~~~~ 316 (769)
T PF05911_consen 241 RPSSPH-D-FSPQNPQKRSKESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL-KSS-GQVS 316 (769)
T ss_pred cccccc-c-ccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-hccc
Confidence 876443 3 34455566788899999999999999999999999999999999999999999999999999 445 9999
Q ss_pred cCCcccccccccccccccccCCCCCCCCccchhhhhhhchhhhhccCCCCCCCCccccCccCCcccchHHHhHHhhhccC
Q 001390 386 MEPSRTSIMSYELSLTSMSDIGSDDKVNCAESRASALISESEHLRSGKQREPPFCRTVGASDISLMDDFVEMERLAIVSV 465 (1088)
Q Consensus 386 ~e~~~~~~~~~~~~~~s~s~~g~dd~~s~~~swasalisel~~fk~~k~~~~~~~~~~~~s~~~lMDDFlEmEkLa~~s~ 465 (1088)
+|+++|+|++||||++|+||+|+||++||++||||||||||||||++|.++++++++++++||+|||||||||||||+|+
T Consensus 317 ~e~~~s~~~~~~~s~~s~se~~~dd~~s~s~SWAsaLiseldqfk~~k~~~~~~~~~~~~~~i~LMDDFlEmEkLA~~s~ 396 (769)
T PF05911_consen 317 MELSSSQNTSNPPSLTSMSEDGNDDEGSCSDSWASALISELDQFKNEKVISRSSSKTISSSDIDLMDDFLEMEKLAALSR 396 (769)
T ss_pred cccccccCCCCCCchhcccccCCCCCCcccchhHHHHhchHHHhccccccccccccCCccccHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999998888888998899999999999999999999
Q ss_pred CCCCCCCccCcccccccCCCCCCCCCCCCCCcccccccccCCcccccccchhhhhhhhhccCCCchhHHHHHHHHHHhhc
Q 001390 466 NKPDGTSHVSPIRANAIVGPLETESSGHSPATIGEEIFRVPEHQADFGVLNREIKSRDILIGKFPSWLQEILELILEQNH 545 (1088)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~wlq~~l~~v~e~~~ 545 (1088)
+++.+.++.++... ++.......+.+.+.++ ..+++.+++|+|||+|+++|+++++
T Consensus 397 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~wLqsv~k~v~~q~~ 452 (769)
T PF05911_consen 397 DSSSPSSCSSSEVD--------SDSSVTLESSSKRESVL----------------ESDKLSDRIPEWLQSVLKLVLEQKE 452 (769)
T ss_pred CCCCCCCCCCcccc--------ccccccccccccccccc----------------cchhhcccccHHHHHHHHHHHHHHH
Confidence 87633333321111 11112222222222211 0157889999999999999999999
Q ss_pred cCCCChhhhHHHHHHHhhhcccccccccccccccccCCCCCCCCCCCCcchhhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 001390 546 VTNRHPYKILEDVRDALVYIDHQSTHQLVDTRESSNNLHKSNSPHFSSVTDAEISLSEKNQQFHSDLSKSIRKIAELIEK 625 (1088)
Q Consensus 546 ~~~~~~~~iledi~~al~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~l~~si~~i~~lie~ 625 (1088)
+++++ .||+||+.||++++++..++..+. .+ +.....+++.
T Consensus 453 ~s~i~--~ILedI~~al~~~~~~~~~~~~~~------~~-------------------------------~~~~~sL~e~ 493 (769)
T PF05911_consen 453 VSKIS--EILEDIEIALDSINNSSNCDDDSE------EY-------------------------------ESMEASLVEE 493 (769)
T ss_pred hhhHH--HHHHHHHHHHHhhccccccccccc------hh-------------------------------hhhhhhHHHH
Confidence 99999 999999999999998865443111 00 1234445555
Q ss_pred hhcCCcccccccccccCCCccccccCCCCCcceeeeecccchhhHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHHHHH
Q 001390 626 INLTSPEYGLLENLSKKDGSVISYKNTAPSGYMVRVFQWKTSELSDILQQFVHACYGVLNKEADFNKFANDLSIALEWIM 705 (1088)
Q Consensus 626 i~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~k~sel~~~Le~f~~~c~~~L~gk~~l~~f~~el~~~L~wi~ 705 (1088)
+..+..... ...++.|+.++|+.+|++|+|+|+|+|+|+++|++|+.|||.+|+||+
T Consensus 494 ~~s~~~~s~-----------------------eL~~avskIsEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwIl 550 (769)
T PF05911_consen 494 SKSMIEISQ-----------------------ELNVAVSKISEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWIL 550 (769)
T ss_pred HHHHHhhcc-----------------------cHHHHHHhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 554333211 123445555899999999999999999999999999999999999999
Q ss_pred hhccccccchhhHHHHhhccCcccccccchhhhccccccccccCCCCCCCCCCCCCcccccCCCccccCCCCCCCCCCCc
Q 001390 706 NHCFSLQDVSSMKDEIKKHFDWDEVRSESEAEVGMVYQFTEADGLHLPRGQSSCLPTFAVANGHYFSHKKELPSNESEPG 785 (1088)
Q Consensus 706 n~~~s~~d~s~~~d~i~~~f~~~~s~s~~e~e~~~~~~~~~~dk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1088)
+|||+++|+++|++.|+++|+|+.+.+ .|. +..++.+ .......+
T Consensus 551 s~~~SLqDv~s~~sEIK~~f~~~ss~e-~E~-----~~~dea~-----------------------------~~~~~el~ 595 (769)
T PF05911_consen 551 SNCFSLQDVSSMRSEIKKNFDGDSSSE-AEI-----NSEDEAD-----------------------------TSEKKELE 595 (769)
T ss_pred HccchHHHHHHHHHHHHHhhhhccccc-ccc-----cchHHHH-----------------------------HHHHHHHH
Confidence 999999999999999999999999863 321 2211111 01122348
Q ss_pred hhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001390 786 SEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDL 865 (1088)
Q Consensus 786 eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl 865 (1088)
++++.+++++.++++.+..|+++++.++.+++++++.|.+|+.+|..++++++.+++|++++.++|+.+++++..+++++
T Consensus 596 eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~ 675 (769)
T PF05911_consen 596 EELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEA 675 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhcCCCCcccchhhhhhhhhhHhHHHHHhhHHHHHHHHHHHHH
Q 001390 866 NEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTKSGIPTDELKQDEKQIQTDWEIATASEKLAECQETILNLGK 945 (1088)
Q Consensus 866 ~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~~~~~~~~~~~e~~~~kqe~EIaaAAeKLAECQETI~~LGK 945 (1088)
++++.|+.+|+.||++++..|+++.++|++|++||+++..+....... +++++++||||||+||+|||||||||+||||
T Consensus 676 ~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~-~~~~k~kqe~EiaaAA~KLAECQeTI~sLGk 754 (769)
T PF05911_consen 676 EELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLA-NEDKKIKQEKEIAAAAEKLAECQETIASLGK 754 (769)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhcc-ccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999865443333 8899999999999999999999999999999
Q ss_pred HHhhccCchhhhcccc
Q 001390 946 QLKALASPREAALFDK 961 (1088)
Q Consensus 946 QLKaLa~~~e~~~~d~ 961 (1088)
||||||||. .+++|+
T Consensus 755 QLksLa~~~-d~~~ds 769 (769)
T PF05911_consen 755 QLKSLATPE-DFLLDS 769 (769)
T ss_pred HHHhcCChh-hhhccC
Confidence 999999887 455553
No 2
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=4.2e-09 Score=130.12 Aligned_cols=207 Identities=20% Similarity=0.240 Sum_probs=175.0
Q ss_pred hHhhHhHhhhHHHHHHHHhhcccchhHHHH-hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHH
Q 001390 43 AELENDVKNLNDKLFSALAECNAKDDLVKK-HAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKE 121 (1088)
Q Consensus 43 ~~~~~~~k~l~ekLs~a~~~~~~kd~lvkq-h~kvaeeav~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKe 121 (1088)
..++..+|..++|+..---+...|..-|++ |-+-+. .+.+...++++.+.+++.+++..+++++|+...+|+
T Consensus 344 ~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~-------~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kK 416 (1293)
T KOG0996|consen 344 EKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAK-------ELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKK 416 (1293)
T ss_pred HHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777888888887555555566665555 222222 356678899999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhH
Q 001390 122 CMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADS 201 (1088)
Q Consensus 122 cmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei 201 (1088)
+++++ +...+....+.+......-...+++.++..|+..+.+++.+ |. .+..+|+.++.....++
T Consensus 417 leke~-----ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~---l~-------e~~~~l~~~t~~~~~e~ 481 (1293)
T KOG0996|consen 417 LEKEI-----EKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERE---LD-------EILDSLKQETEGIREEI 481 (1293)
T ss_pred HHHHH-----HHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHH---HH-------HHHHHHhhhhhhhHHHH
Confidence 99999 77777778888878888888889999999999988888877 55 78899999999999999
Q ss_pred HHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001390 202 NALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLV 271 (1088)
Q Consensus 202 ~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~ 271 (1088)
..++.+|.||.++...++.++++++.||+++....+-..+..+.+..+++.+...+.+.-+++.+|...+
T Consensus 482 ~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l 551 (1293)
T KOG0996|consen 482 EKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEEL 551 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999988888877777777777666543
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.31 E-value=5.9e-06 Score=105.60 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=21.1
Q ss_pred hHhHHHHHhhHHHHHHHHHHHHHHHhhccCc
Q 001390 923 DWEIATASEKLAECQETILNLGKQLKALASP 953 (1088)
Q Consensus 923 e~EIaaAAeKLAECQETI~~LGKQLKaLa~~ 953 (1088)
..++...-.++.+++..|..+..++..+...
T Consensus 895 ~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~ 925 (1164)
T TIGR02169 895 EAQLRELERKIEELEAQIEKKRKRLSELKAK 925 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777777777777777776533
No 4
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.22 E-value=6.7e-06 Score=106.71 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=22.2
Q ss_pred hhhhHhHHHHHhhHHHHHHHHHHHHHHHhh
Q 001390 920 IQTDWEIATASEKLAECQETILNLGKQLKA 949 (1088)
Q Consensus 920 ~kqe~EIaaAAeKLAECQETI~~LGKQLKa 949 (1088)
..-+.+|..+..++.+|.+.|..+-..+..
T Consensus 887 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 916 (1163)
T COG1196 887 EELEEELRELESELAELKEEIEKLRERLEE 916 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567888888899999888887655544
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.16 E-value=4.3e-05 Score=97.47 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=15.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhccC
Q 001390 926 IATASEKLAECQETILNLGKQLKALAS 952 (1088)
Q Consensus 926 IaaAAeKLAECQETI~~LGKQLKaLa~ 952 (1088)
+..+-..+.+++..|..+-.++..+..
T Consensus 896 ~~~~~~~~~~~~~~~~~l~~~l~~l~~ 922 (1179)
T TIGR02168 896 LEELSEELRELESKRSELRRELEELRE 922 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555566666666666666653
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.05 E-value=0.00013 Score=93.63 Aligned_cols=20 Identities=20% Similarity=0.451 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhhccC
Q 001390 933 LAECQETILNLGKQLKALAS 952 (1088)
Q Consensus 933 LAECQETI~~LGKQLKaLa~ 952 (1088)
++++++.|.-|-++|+.|.+
T Consensus 953 ~~~l~~~l~~l~~~i~~l~~ 972 (1164)
T TIGR02169 953 LEDVQAELQRVEEEIRALEP 972 (1164)
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 34555555555555555544
No 7
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.79 E-value=0.003 Score=82.75 Aligned_cols=81 Identities=17% Similarity=0.194 Sum_probs=50.8
Q ss_pred hHhHhhhHHHHHHHHhhcccchhHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHH
Q 001390 46 ENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQ 125 (1088)
Q Consensus 46 ~~~~k~l~ekLs~a~~~~~~kd~lvkqh~kvaeeav~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQ 125 (1088)
-..++.++.+|..+-.++......+..+..--.++-..++.+..++..++..+..+......+...+..+++.+..+.++
T Consensus 231 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~ 310 (1163)
T COG1196 231 LAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRER 310 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466677777777777777777777777777777777777777777777777766444444444444444444444443
Q ss_pred h
Q 001390 126 L 126 (1088)
Q Consensus 126 L 126 (1088)
+
T Consensus 311 ~ 311 (1163)
T COG1196 311 L 311 (1163)
T ss_pred H
Confidence 3
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.69 E-value=0.0047 Score=79.27 Aligned_cols=48 Identities=27% Similarity=0.380 Sum_probs=23.4
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhHHHHHHH
Q 001390 330 LTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQIE 377 (1088)
Q Consensus 330 l~~rl~~~eeEnk~lke~L~~k~~ELq~sr~~~a~t~skL~~~e~q~~ 377 (1088)
+..++..++.+...+...+.....++...+.-+...-+++..++.++.
T Consensus 438 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 485 (1179)
T TIGR02168 438 LQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELA 485 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555554444444444444444444445555555444
No 9
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.46 E-value=0.026 Score=76.21 Aligned_cols=82 Identities=23% Similarity=0.220 Sum_probs=72.7
Q ss_pred chhHhhHhHhhhHHHHHHHHhhcccchhHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHH
Q 001390 41 DKAELENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALK 120 (1088)
Q Consensus 41 ~~~~~~~~~k~l~ekLs~a~~~~~~kd~lvkqh~kvaeeav~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLK 120 (1088)
.++++.+.++....-|+.....+.....+|.|+-|...|..++-..+..++...+.....++++...|...+..|..-|.
T Consensus 1063 ~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Le 1142 (1930)
T KOG0161|consen 1063 QKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELE 1142 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888889999999999999999999999999999999999999999999999999998888888877776
Q ss_pred HH
Q 001390 121 EC 122 (1088)
Q Consensus 121 ec 122 (1088)
+.
T Consensus 1143 e~ 1144 (1930)
T KOG0161|consen 1143 EQ 1144 (1930)
T ss_pred HH
Confidence 66
No 10
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.36 E-value=0.026 Score=71.85 Aligned_cols=206 Identities=19% Similarity=0.238 Sum_probs=137.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHH
Q 001390 145 SMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRV 224 (1088)
Q Consensus 145 s~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~v 224 (1088)
....+......|.++..++.++......+..+...|-+.++-+..++++...-..+|..+.+.+...-++...++.+++.
T Consensus 283 l~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~ 362 (1074)
T KOG0250|consen 283 LNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIRE 362 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455666666666666655555555555667778888888888888889999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhhHHHHhhcCCChhhhhccC
Q 001390 225 LGKELEIRNEEREFNRRTADESHKQH-LESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRESPETRRKRL 303 (1088)
Q Consensus 225 lqkELEIr~eEre~s~ksaEaA~KQh-lEsvKKIakLEaECqRLr~l~rk~lpgpaa~a~mk~eve~~~~~~~~~r~~~~ 303 (1088)
.+..+.-...+.++-.+.+..+++|. .+......+.|.+...|...|-|
T Consensus 363 ~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek------------------------------ 412 (1074)
T KOG0250|consen 363 IENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEK------------------------------ 412 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH------------------------------
Confidence 88888888888888888888888877 55555555555555555444432
Q ss_pred CCCCCCcccccCCCCCCCCCcchhhhHHHHHHHhHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhHHHHHHHHhhccc
Q 001390 304 NSSPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQIEELSKGR 383 (1088)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eeEnk~lke~L~~k~~ELq~sr~~~a~t~skL~~~e~q~~~~s~~~ 383 (1088)
+-+++..+.+|-..+++.+.....|+-.-+.+...-.-+++.-..+|..+...+
T Consensus 413 --------------------------~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k 466 (1074)
T KOG0250|consen 413 --------------------------LEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTK 466 (1074)
T ss_pred --------------------------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 112333444555555555555555555555666666666777777777655443
Q ss_pred cccCCcccccccccccccccccCCCCCCCCccchhhhhhhchhhhhcc
Q 001390 384 KIMEPSRTSIMSYELSLTSMSDIGSDDKVNCAESRASALISESEHLRS 431 (1088)
Q Consensus 384 ~~~e~~~~~~~~~~~~~~s~s~~g~dd~~s~~~swasalisel~~fk~ 431 (1088)
.|.++-.|+--.+|+-++++-+.
T Consensus 467 -------------------------~dkvs~FG~~m~~lL~~I~r~~~ 489 (1074)
T KOG0250|consen 467 -------------------------TDKVSAFGPNMPQLLRAIERRKR 489 (1074)
T ss_pred -------------------------cchhhhcchhhHHHHHHHHHHHh
Confidence 45555566666777777776554
No 11
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.36 E-value=0.043 Score=74.27 Aligned_cols=254 Identities=21% Similarity=0.296 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001390 86 KAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKR 165 (1088)
Q Consensus 86 KaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~ 165 (1088)
+.+.++..++.+++..+.....+++....+...+-.|..+| .++.-....+.....-.-..+.++|..+.++..+
T Consensus 842 ~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l-----~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~ 916 (1930)
T KOG0161|consen 842 AKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQL-----QAEKENLAEAEELLERLRAEKQELEKELKELKER 916 (1930)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888888888888888888888888887 7777777777666666677778899999999999
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHH-
Q 001390 166 LAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTAD- 244 (1088)
Q Consensus 166 L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaE- 244 (1088)
+..++..+..|.+-.-....-+..|++.....+..+..++.+....+.++..|+-++..+...+.-++.++..-.....
T Consensus 917 ~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~ 996 (1930)
T KOG0161|consen 917 LEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRE 996 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888888886666666778888888888888877888888888888888888887777766666666655443333
Q ss_pred ------HHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhhHHHHhhcCCChhhhhccCCCCCCCcccccCCCC
Q 001390 245 ------ESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRESPETRRKRLNSSPLGSMVDSAFDN 318 (1088)
Q Consensus 245 ------aA~KQhlEsvKKIakLEaECqRLr~l~rk~lpgpaa~a~mk~eve~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 318 (1088)
+..++.....+..++||..+..+...+.+. .++++|+|.. .|+.-+
T Consensus 997 l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e-------~~~r~e~Ek~--------~rkle~------------- 1048 (1930)
T KOG0161|consen 997 LQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLERE-------KRIRMELEKA--------KRKLEG------------- 1048 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH--------HHHHHH-------------
Confidence 334444455555666666666666555443 3567777731 111100
Q ss_pred CCCCCcchhhhHHHHHHHhHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhHHHHHHHHh
Q 001390 319 PPDTPSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQIEEL 379 (1088)
Q Consensus 319 ~~~~~~~~~~~l~~rl~~~eeEnk~lke~L~~k~~ELq~sr~~~a~t~skL~~~e~q~~~~ 379 (1088)
....+.+.+......-..|...|+++..||.....-......=+.+++.++.++
T Consensus 1049 -------el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL 1102 (1930)
T KOG0161|consen 1049 -------ELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKEL 1102 (1930)
T ss_pred -------HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 001122333333334445566677777777666655555554455555555544
No 12
>PRK02224 chromosome segregation protein; Provisional
Probab=98.17 E-value=0.063 Score=68.30 Aligned_cols=49 Identities=27% Similarity=0.358 Sum_probs=28.2
Q ss_pred hHHHHHHHhHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhHHHHHHH
Q 001390 329 FLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQIE 377 (1088)
Q Consensus 329 ~l~~rl~~~eeEnk~lke~L~~k~~ELq~sr~~~a~t~skL~~~e~q~~ 377 (1088)
.+...+..++++++.+++-++....++...+......-..|..++.++.
T Consensus 346 ~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~ 394 (880)
T PRK02224 346 SLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIE 394 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777766666665555555555544444444555555544
No 13
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=98.14 E-value=0.065 Score=67.45 Aligned_cols=217 Identities=14% Similarity=0.132 Sum_probs=114.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhhcCCcccccccccccCCCccccccCCCCCcceeeeecccchhhHHHHHHHHHHHhhh
Q 001390 604 KNQQFHSDLSKSIRKIAELIEKINLTSPEYGLLENLSKKDGSVISYKNTAPSGYMVRVFQWKTSELSDILQQFVHACYGV 683 (1088)
Q Consensus 604 ~~q~~~~~l~~si~~i~~lie~i~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~k~sel~~~Le~f~~~c~~~ 683 (1088)
+.+..+++|..+|.+|++|+..+...+..|. |.+ .+ ..+|...++.|..++..+
T Consensus 496 s~~~~s~eL~~avskIsEfv~~LekeVh~C~--DLL--sg----------------------kadLE~fieE~s~tLdwI 549 (769)
T PF05911_consen 496 SMIEISQELNVAVSKISEFVLVLEKEVHVCQ--DLL--SG----------------------KADLERFIEEFSLTLDWI 549 (769)
T ss_pred HHHhhcccHHHHHHhHHHHHHHHHHHHHHHH--HHh--cc----------------------hhHHHHHHHHHHHHHHHH
Confidence 3445788999999999999999988877776 332 11 237999999999999999
Q ss_pred hcCchhHHH---HHHHHHHHHHHHHhhccccccchhhHHHHhhccCcccccccchhhhccccccccccCCCCCCCCCCCC
Q 001390 684 LNKEADFNK---FANDLSIALEWIMNHCFSLQDVSSMKDEIKKHFDWDEVRSESEAEVGMVYQFTEADGLHLPRGQSSCL 760 (1088)
Q Consensus 684 L~gk~~l~~---f~~el~~~L~wi~n~~~s~~d~s~~~d~i~~~f~~~~s~s~~e~e~~~~~~~~~~dk~~l~~~~~~~~ 760 (1088)
+++...|.+ -..++-.-+.|-..+-.............. .....+.| ++..
T Consensus 550 ls~~~SLqDv~s~~sEIK~~f~~~ss~e~E~~~~dea~~~~~-------~el~eelE-----------~le~-------- 603 (769)
T PF05911_consen 550 LSNCFSLQDVSSMRSEIKKNFDGDSSSEAEINSEDEADTSEK-------KELEEELE-----------KLES-------- 603 (769)
T ss_pred HHccchHHHHHHHHHHHHHhhhhcccccccccchHHHHHHHH-------HHHHHHHH-----------HHHH--------
Confidence 999999988 445555555554443222111100000000 00000111 0000
Q ss_pred CcccccCCCccccCCCCCCCCCCCchhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHH
Q 001390 761 PTFAVANGHYFSHKKELPSNESEPGSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVI 840 (1088)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~sel 840 (1088)
.+..+......-.++++.++..+.+++..|.+.+.+++..+..-..++.+|.-.+.....+.-....+
T Consensus 604 ------------eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~ 671 (769)
T PF05911_consen 604 ------------EKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDL 671 (769)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 00000000000023444444444444444444554444444444444444444444444444444444
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 001390 841 EDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSN 884 (1088)
Q Consensus 841 EeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~ 884 (1088)
++.++.+..+...|+.++..-+.--..+..|...|+.+|+....
T Consensus 672 e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~ 715 (769)
T PF05911_consen 672 EAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKK 715 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhc
Confidence 55555555555666666665555555666666666666665543
No 14
>PRK03918 chromosome segregation protein; Provisional
Probab=97.95 E-value=0.15 Score=64.76 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHh
Q 001390 85 EKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQL 126 (1088)
Q Consensus 85 eKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQL 126 (1088)
+..+..+..+++++.....+...++..+..+...+..+.+++
T Consensus 189 ~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l 230 (880)
T PRK03918 189 ENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV 230 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555555555555555555555554444
No 15
>PRK02224 chromosome segregation protein; Provisional
Probab=97.89 E-value=0.19 Score=63.99 Aligned_cols=116 Identities=14% Similarity=0.226 Sum_probs=62.4
Q ss_pred hhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhH-----HHHHHHHH
Q 001390 788 FINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDL-----DTQLKVAR 862 (1088)
Q Consensus 788 LEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~L-----esqL~ele 862 (1088)
+..++..+.++..++..+. .+..+...+.+++..+.+++..+..+++....+.+++......+..+ ..++..+.
T Consensus 574 ~~~~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~~~~~~~~~e~l~ 652 (880)
T PRK02224 574 VAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAR 652 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 3334444444444444444 24444444444444444444444444444444444444444444333 34555666
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhh
Q 001390 863 VDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVT 904 (1088)
Q Consensus 863 aEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e 904 (1088)
.++.++...+..++.++...+..+.++..++..++.+++.+.
T Consensus 653 ~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~~e~~~ 694 (880)
T PRK02224 653 EDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELE 694 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777777777777777777777776543
No 16
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.89 E-value=0.09 Score=63.71 Aligned_cols=50 Identities=30% Similarity=0.254 Sum_probs=39.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHh
Q 001390 77 AQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQL 126 (1088)
Q Consensus 77 aeeav~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQL 126 (1088)
.++....++.+..|...|+.++.+...+...|++.+..|....++..+.+
T Consensus 194 ~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~ 243 (546)
T PF07888_consen 194 QKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKEL 243 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556678889999999999999999999999998888888876555444
No 17
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.76 E-value=0.42 Score=64.02 Aligned_cols=49 Identities=22% Similarity=0.239 Sum_probs=35.6
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhHHHHHHHH
Q 001390 330 LTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQIEE 378 (1088)
Q Consensus 330 l~~rl~~~eeEnk~lke~L~~k~~ELq~sr~~~a~t~skL~~~e~q~~~ 378 (1088)
+..-+..+..+-..+.+-.+.-+.+++..-....-.-..|..++.++..
T Consensus 575 l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~ 623 (1311)
T TIGR00606 575 LEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSS 623 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777777777777777777777777777777774
No 18
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.50 E-value=0.07 Score=58.37 Aligned_cols=171 Identities=21% Similarity=0.277 Sum_probs=95.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001390 83 GREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAET 162 (1088)
Q Consensus 83 GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El 162 (1088)
--++|++|+.+|.+.+..++...-..++|+.....+|-...+.. +...+...++-......+.-...||.+|.++
T Consensus 30 ~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~-----de~er~~k~lE~r~~~~eeri~~lE~~l~ea 104 (237)
T PF00261_consen 30 RAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRA-----DESERARKVLENREQSDEERIEELEQQLKEA 104 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHH-----HHHCHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34577888888888888888887778888777777777777766 4444444455444444444444555555555
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHH--------------
Q 001390 163 SKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKE-------------- 228 (1088)
Q Consensus 163 ~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkE-------------- 228 (1088)
...+....... .+.......++.++.....|++..+..+..|..+|+.+...
T Consensus 105 ~~~~ee~e~k~--------------~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~r 170 (237)
T PF00261_consen 105 KRRAEEAERKY--------------EEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASER 170 (237)
T ss_dssp HHHHHHHHHHH--------------HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Confidence 55444433332 22222223333333333344444444444444433333322
Q ss_pred -------HHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001390 229 -------LEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVR 272 (1088)
Q Consensus 229 -------LEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~r 272 (1088)
+..+.....-+...++.|......+.+.|..|+.++..++....
T Consensus 171 e~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~ 221 (237)
T PF00261_consen 171 EDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYK 221 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555556666666666666777777777766665543
No 19
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.45 E-value=0.085 Score=64.55 Aligned_cols=193 Identities=23% Similarity=0.293 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHHHHhhh-----hhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001390 87 AEAEVVSLKQELDAALQQR-----DTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAE 161 (1088)
Q Consensus 87 aEaE~~slKkqLe~~~qq~-----v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~E 161 (1088)
.+.++..++.++..+.... -..++.+..+...+..+-..| +.|......+.+....+.+....++.....
T Consensus 254 i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~l-----ekE~~A~~~vek~~~~l~~~l~~~~e~~~~ 328 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDIL-----EREVKARKYVEKNSDTLPDFLEHAKEQNKE 328 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4556666666666643322 223445555555555555555 555555555555555555555555555555
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHH
Q 001390 162 TSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRR 241 (1088)
Q Consensus 162 l~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~k 241 (1088)
+..+++.+... +.|++-- -..+..+.++...+...+..+...+..-......++.++..+.+.++-...++.--..
T Consensus 329 l~~Ei~~l~~s-Y~l~~~e---~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e 404 (569)
T PRK04778 329 LKEEIDRVKQS-YTLNESE---LESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSE 404 (569)
T ss_pred HHHHHHHHHHc-cccCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555432 2222111 1235566666667777777777777777777888888888899999999999999999
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-hHHHhhhhHHH
Q 001390 242 TADESHKQHLESVKKIAKLESECQRLRVLVRKR-LPG-PAALAKMKNEV 288 (1088)
Q Consensus 242 saEaA~KQhlEsvKKIakLEaECqRLr~l~rk~-lpg-paa~a~mk~ev 288 (1088)
.+...++...+...++.++......++..++++ ||| |.-.-.|-.++
T Consensus 405 ~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~ 453 (569)
T PRK04778 405 MLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEV 453 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Confidence 999999999999999999999999999988888 999 55554444443
No 20
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.30 E-value=0.32 Score=59.15 Aligned_cols=118 Identities=21% Similarity=0.288 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001390 88 EAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLA 167 (1088)
Q Consensus 88 EaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~ 167 (1088)
..|...|.+....+..+...++.++..|...|....+....++.. ...+......+...+..|..+.+++..++.
T Consensus 149 qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~-----~kel~~~~e~l~~E~~~L~~q~~e~~~ri~ 223 (546)
T PF07888_consen 149 QKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQ-----QKELTESSEELKEERESLKEQLAEARQRIR 223 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444555544444443333333222111 111222223333333344444444444444
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcch
Q 001390 168 KLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDS 210 (1088)
Q Consensus 168 k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~ 210 (1088)
.++.+...|..-..+.+.+...+++.....+....+|+.+|..
T Consensus 224 ~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~ 266 (546)
T PF07888_consen 224 ELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKE 266 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444455555554443333333333344433
No 21
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.27 E-value=1.2 Score=57.16 Aligned_cols=191 Identities=19% Similarity=0.183 Sum_probs=91.4
Q ss_pred HHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHH-hhhhhHHHHHHHHHHhhhhhHHHHHHH------HHHH-
Q 001390 70 VKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEE-RLIHLDAALKECMDQLHFVREEQEQRI------HDAV- 141 (1088)
Q Consensus 70 vkqh~kvaeeav~GweKaEaE~~slKkqLe~~~qq~v~lEE-rvkhLd~aLKecmkQLr~~rEEqEqki------~da~- 141 (1088)
++.-+..++++..+-.+.........+.++.++.+.-.+++ |=+.|.+.+|.+..++..++.+--+.. .+++
T Consensus 246 ~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~ 325 (1174)
T KOG0933|consen 246 RKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLNLKKETLN 325 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455666777777777777766666666666666666555 344455556666666655544332211 1111
Q ss_pred --HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhh
Q 001390 142 --MKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLK 219 (1088)
Q Consensus 142 --~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLK 219 (1088)
.++.++..+-..+++..|.+-.+++.+....+..|..+.+.=++++ ...+..++.+.+-+.+-+.+-..|.
T Consensus 326 ~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~-------e~~e~~~eslt~G~Ss~~~~e~~l~ 398 (1174)
T KOG0933|consen 326 GEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLL-------EKAEELVESLTAGLSSNEDEEKTLE 398 (1174)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHhcccccCccchhhHH
Confidence 1223333333334444444444444444444333433333222222 2334444444444544444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001390 220 YEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRL 267 (1088)
Q Consensus 220 yEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRL 267 (1088)
.+++.+-..+.-..-+...+.--++-.+++.....-+.+..-++|...
T Consensus 399 ~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~ 446 (1174)
T KOG0933|consen 399 DQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKD 446 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHH
Confidence 444444444444444444444444444444444444444444444433
No 22
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.26 E-value=0.12 Score=63.09 Aligned_cols=236 Identities=21% Similarity=0.185 Sum_probs=146.7
Q ss_pred HhhHhHhhhHHHHHH----HHhhcccc-------hhHHHHhHHH----------HHHHhhhhHHHHHHHHHHHHHHHHHH
Q 001390 44 ELENDVKNLNDKLFS----ALAECNAK-------DDLVKKHAKM----------AQEAITGREKAEAEVVSLKQELDAAL 102 (1088)
Q Consensus 44 ~~~~~~k~l~ekLs~----a~~~~~~k-------d~lvkqh~kv----------aeeav~GweKaEaE~~slKkqLe~~~ 102 (1088)
++...|+-||++|-+ +|+.-.+| +++|-.--++ ++|++----.+|..+-++.++-+++.
T Consensus 350 K~~~~i~~Ln~~leaReaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr 429 (961)
T KOG4673|consen 350 KTKKEIKMLNNALEAREAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKVQALTKERDALR 429 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 355668889988864 23333333 2222222233 23333344445555555555555555
Q ss_pred hhhhhHHHhhh--hhHHHHHHHHHHhhhhhHHHHH-----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001390 103 QQRDTGEERLI--HLDAALKECMDQLHFVREEQEQ-----RIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTH 175 (1088)
Q Consensus 103 qq~v~lEErvk--hLd~aLKecmkQLr~~rEEqEq-----ki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~ 175 (1088)
.+--.+.+.+. -+.+-|++|..+++.+.+|-|. .-+.++.+|++.-++.-..|++|+.++-+.|..+ -..
T Consensus 430 ~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE---~~~ 506 (961)
T KOG4673|consen 430 REQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSE---ENK 506 (961)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHH---HHH
Confidence 44444443332 2345789999999999999873 4455666666666666666666666665544433 334
Q ss_pred hhHHHHHHHHHHHHHH-------hhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHH
Q 001390 176 LTKALLAKEKLIEDLG-------KQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHK 248 (1088)
Q Consensus 176 Ls~~l~~~~~ii~eLk-------ee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~K 248 (1088)
|..+|..|+.+-.-+. -++.....+...++++.+.++.++.+++.-+..+.+.|..++-=+ -|.|..
T Consensus 507 lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlk------Qdear~ 580 (961)
T KOG4673|consen 507 LKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLK------QDEARE 580 (961)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhh------hhHHHH
Confidence 7777777776654444 444456666677788888888888888888888888654444222 267888
Q ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHhcCCChHHHhhhhHHHHhhcCCC
Q 001390 249 QHLESVKKIAKLESECQRLR-VLVRKRLPGPAALAKMKNEVEILGRES 295 (1088)
Q Consensus 249 QhlEsvKKIakLEaECqRLr-~l~rk~lpgpaa~a~mk~eve~~~~~~ 295 (1088)
+|...+..+..|-.-+++-. ..+||- ..||-|++.|.|..
T Consensus 581 ~~~~lvqqv~dLR~~L~~~Eq~aarrE-------d~~R~Ei~~LqrRl 621 (961)
T KOG4673|consen 581 RESMLVQQVEDLRQTLSKKEQQAARRE-------DMFRGEIEDLQRRL 621 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 88888888777766666655 344442 46899998887653
No 23
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.24 E-value=0.2 Score=57.07 Aligned_cols=165 Identities=23% Similarity=0.275 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---
Q 001390 84 REKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLA--- 160 (1088)
Q Consensus 84 weKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~--- 160 (1088)
|+....+-..||.+++........|.+.+..|..+--.+..+. |..|..|..++.+++..+.+.+..|-.++.
T Consensus 29 ~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~a----EqEEE~isN~LlKkl~~l~keKe~L~~~~e~EE 104 (310)
T PF09755_consen 29 IESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKA----EQEEEFISNTLLKKLQQLKKEKETLALKYEQEE 104 (310)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555666666666666666666665555555444444 333456666666766666665555533322
Q ss_pred -----HHHHHHHHhhhhhhhhhHHHHH-HHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHH
Q 001390 161 -----ETSKRLAKLGVENTHLTKALLA-KEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNE 234 (1088)
Q Consensus 161 -----El~k~L~k~~aEn~~Ls~~l~~-~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~e 234 (1088)
.|+++|..++.|...|.+.|.. .+-++..|......++.+...++..|+-+-++.-.|.
T Consensus 105 E~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlE--------------- 169 (310)
T PF09755_consen 105 EFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLE--------------- 169 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH---------------
Confidence 2333444444444444444432 2333344433333333333333333333333333333
Q ss_pred HHHHhHHhHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHh
Q 001390 235 EREFNRRTADESHKQH-LESVKKIAKLESECQRLRVLVRK 273 (1088)
Q Consensus 235 Ere~s~ksaEaA~KQh-lEsvKKIakLEaECqRLr~l~rk 273 (1088)
..++.-.+-+ -.+.|.+.+|++|-+.|+..+-.
T Consensus 170 ------n~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 170 ------NTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 2333222222 23567888999999999877765
No 24
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.20 E-value=0.16 Score=61.75 Aligned_cols=289 Identities=19% Similarity=0.228 Sum_probs=154.3
Q ss_pred hhHhHhhhHHHHHHHHhhcccchhHHHHhHH------HHHHHhhhh-----HHHHHHHHHHHHHHHHHHhhhhhHHHhhh
Q 001390 45 LENDVKNLNDKLFSALAECNAKDDLVKKHAK------MAQEAITGR-----EKAEAEVVSLKQELDAALQQRDTGEERLI 113 (1088)
Q Consensus 45 ~~~~~k~l~ekLs~a~~~~~~kd~lvkqh~k------vaeeav~Gw-----eKaEaE~~slKkqLe~~~qq~v~lEErvk 113 (1088)
=.+.+..||++|+.-.--+. -|=.||.+ +.+.+|.|= ..=++|+..+++.+++.......++-.+.
T Consensus 40 EK~El~~LNDRLA~YIekVR---~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~ 116 (546)
T KOG0977|consen 40 EKKELQELNDRLAVYIEKVR---FLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEIT 116 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888888887665543 23334443 333333221 34589999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhh
Q 001390 114 HLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQ 193 (1088)
Q Consensus 114 hLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee 193 (1088)
.|..-++++...+ +.-++-...+.++..+|...-.++++++.-+..+....+.+. .+.-.+=..|...|..-
T Consensus 117 kl~~e~~elr~~~-----~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~---~~Lk~en~rl~~~l~~~ 188 (546)
T KOG0977|consen 117 KLREELKELRKKL-----EKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDEL---KRLKAENSRLREELARA 188 (546)
T ss_pred HhHHHHHHHHHHH-----HHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH---HHHHHHhhhhHHHHHHH
Confidence 9999999999888 666667777778888888888888887777766554444442 11111112333333333
Q ss_pred hhhHhhhH---HHHHhhcchHHHHHHHhh----HHHHHHHHH----H--HHHHHHHHHhHHhHHHHHHhHHHHHHHHHH-
Q 001390 194 RTQAEADS---NALMVRLDSTEKENASLK----YEVRVLGKE----L--EIRNEEREFNRRTADESHKQHLESVKKIAK- 259 (1088)
Q Consensus 194 ~s~~eaei---~~Lq~rLE~~EKEn~sLK----yEl~vlqkE----L--EIr~eEre~s~ksaEaA~KQhlEsvKKIak- 259 (1088)
+.+.++++ .+++.+.+.+..++..++ .||.....- . +.|..=++--..++..-+.|+......-.+
T Consensus 189 r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~d 268 (546)
T KOG0977|consen 189 RKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKD 268 (546)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33333332 333444444444444433 111111110 0 000000111111222222222222221111
Q ss_pred ----HHHHHHHHHHHHHhcCCChHHHhhhhHHHHhhcCCChhhhhccCCCCCCCcccccCCCCCCCCCcchhhhHHHHHH
Q 001390 260 ----LESECQRLRVLVRKRLPGPAALAKMKNEVEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPSKRINFLTEQLR 335 (1088)
Q Consensus 260 ----LEaECqRLr~l~rk~lpgpaa~a~mk~eve~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~ 335 (1088)
.+..+++.|.- .-|+.....+-|.||..+-..-.+.|-+ .++ ....+.+|..|+.
T Consensus 269 iE~~Y~~kI~~i~~~---~~~~~~~~~~~rEEl~~~R~~i~~Lr~k-----------------lse-lE~~n~~L~~~I~ 327 (546)
T KOG0977|consen 269 IESWYKRKIQEIRTS---AERANVEQNYAREELRRIRSRISGLRAK-----------------LSE-LESRNSALEKRIE 327 (546)
T ss_pred HHHHHHHHHHHHHhh---hccccchhHHHHHHHHHHHhcccchhhh-----------------hcc-ccccChhHHHHHH
Confidence 12222222211 1233344444556665432221111111 111 1223456777776
Q ss_pred Hh----HHHHHHHHHHHhhhhhhhhHHHHHHHHh
Q 001390 336 AM----EEENNSLKEVLDKKTNELQFSRTMYARA 365 (1088)
Q Consensus 336 ~~----eeEnk~lke~L~~k~~ELq~sr~~~a~t 365 (1088)
.+ +++.+..-.+|+.|.+++...|--|..-
T Consensus 328 dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l 361 (546)
T KOG0977|consen 328 DLEYQLDEDQRSFEQALNDKDAEIAKMREECQQL 361 (546)
T ss_pred HHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 55 4778999999999999999999888763
No 25
>PRK11637 AmiB activator; Provisional
Probab=97.19 E-value=0.15 Score=60.23 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 001390 249 QHLESVKKIAKLESECQRLRVLV 271 (1088)
Q Consensus 249 QhlEsvKKIakLEaECqRLr~l~ 271 (1088)
+..+....++.|+++-++|+.++
T Consensus 227 ~~~~~~~~l~~l~~~~~~L~~~I 249 (428)
T PRK11637 227 SLQKDQQQLSELRANESRLRDSI 249 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555555555444
No 26
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.12 E-value=2.3 Score=57.78 Aligned_cols=116 Identities=13% Similarity=0.179 Sum_probs=56.9
Q ss_pred hhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHH------------HHhhhHHH
Q 001390 789 INVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQK------------MINEDLDT 856 (1088)
Q Consensus 789 EqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~------------e~le~Les 856 (1088)
++++..+..++.....+..++...+.++......+..+++.++.+++.+.+++..|..+- ...+.+..
T Consensus 988 ~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~~~l~~ 1067 (1486)
T PRK04863 988 EKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHA 1067 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHhHHHHHH
Confidence 445555555555555555555555555555555555555555555555555555554431 11133333
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhh
Q 001390 857 QLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVT 904 (1088)
Q Consensus 857 qL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e 904 (1088)
+|...+..-..+...+...+.|++.....+......+..+..++...+
T Consensus 1068 ~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK 1115 (1486)
T PRK04863 1068 RLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAK 1115 (1486)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444334444444444444444444444444444444444444444433
No 27
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.04 E-value=2.7 Score=57.26 Aligned_cols=210 Identities=24% Similarity=0.298 Sum_probs=127.5
Q ss_pred hhHhhHhHhhhHHHHHHHHhhcccchhHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHH
Q 001390 42 KAELENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKE 121 (1088)
Q Consensus 42 ~~~~~~~~k~l~ekLs~a~~~~~~kd~lvkqh~kvaeeav~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKe 121 (1088)
...|++.+..|..||..-..++. .+-..--+-.++|+.--+-+..++..+...+..+..-...++-+++.|+..|+.
T Consensus 807 i~eL~~el~~lk~klq~~~~~~r---~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~ 883 (1822)
T KOG4674|consen 807 IKELERELQKLKKKLQEKSSDLR---ELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKS 883 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777666555552 445555567778888888888888888888888888888888888888888888
Q ss_pred HHHHhhhhhH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhH
Q 001390 122 CMDQLHFVRE----EQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQA 197 (1088)
Q Consensus 122 cmkQLr~~rE----EqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~ 197 (1088)
..-+.....- +......+++.....+.+++ ..+|...........+.+..++.+| ..++.....+
T Consensus 884 ~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l----~~~L~~a~s~i~~yqe~~~s~eqsl-------~~~ks~lde~ 952 (1822)
T KOG4674|consen 884 AKTQLLNLDSKSSNEDATILEDTLRKELEEITDL----KEELTDALSQIREYQEEYSSLEQSL-------ESVKSELDET 952 (1822)
T ss_pred hHHHHhhccccchhhhhhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 7776644431 22233333333333333333 3444444444445555555555444 3444444433
Q ss_pred hhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001390 198 EADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLV 271 (1088)
Q Consensus 198 eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~ 271 (1088)
..+ +.++++...+++.+|.-++-.+..++.-++++.+.+.+. -..+.+..++++..+-.|...++...
T Consensus 953 ~~~---~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~---~e~~~~~~~~e~~sl~ne~~~~~~~~ 1020 (1822)
T KOG4674|consen 953 RLE---LEAKIESLHKKITSLEEELSELEKEIENLREELELSTKG---KEDKLLDLSREISSLQNELKSLLKAA 1020 (1822)
T ss_pred HHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---hhhhHHHHHHHhHHHHHHHHHHHHHH
Confidence 322 234555556666666666666666666666665554443 34556777777777777777776554
No 28
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.04 E-value=0.84 Score=51.29 Aligned_cols=44 Identities=18% Similarity=0.244 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHh
Q 001390 83 GREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQL 126 (1088)
Q Consensus 83 GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQL 126 (1088)
=|..-+.++..++++++++...+..++-.+.++...+..+..++
T Consensus 48 ~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~ 91 (312)
T PF00038_consen 48 IKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKY 91 (312)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHH
Confidence 48888999999999999999999999999999999999998888
No 29
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.97 E-value=3.1 Score=56.64 Aligned_cols=145 Identities=12% Similarity=0.097 Sum_probs=81.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHH
Q 001390 75 KMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMI 154 (1088)
Q Consensus 75 kvaeeav~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~e 154 (1088)
.+.||| +|+. .+....++.|+..+.+...+++.+.+++..++++.+++..+++-++... . ..........
T Consensus 283 ~liEEA-ag~r---~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e-----e-~lr~q~ei~~ 352 (1486)
T PRK04863 283 VHLEEA-LELR---RELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ-----T-ALRQQEKIER 352 (1486)
T ss_pred HHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H-HHHHHHHHHH
Confidence 566777 7766 7777888899999999999999999999999999999966655443322 1 1111222223
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHH
Q 001390 155 LEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNE 234 (1088)
Q Consensus 155 LE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~e 234 (1088)
+...+.++..++.....+. .+...-+.++..+...++.++..++.++..++.+...++.++...+..+.-+..
T Consensus 353 l~~~LeELee~Lee~eeeL-------eeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~ 425 (1486)
T PRK04863 353 YQADLEELEERLEEQNEVV-------EEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALER 425 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443333331 122233344444444455555555555555555555555555544444443333
Q ss_pred HH
Q 001390 235 ER 236 (1088)
Q Consensus 235 Er 236 (1088)
=+
T Consensus 426 ~~ 427 (1486)
T PRK04863 426 AK 427 (1486)
T ss_pred HH
Confidence 33
No 30
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.92 E-value=1.7 Score=57.92 Aligned_cols=135 Identities=21% Similarity=0.268 Sum_probs=92.7
Q ss_pred hhchhHhhHhHhhhHHHHHHHHhhcccchhHHHHhHHHHHHHh-------hhhHHHHHHHHHHHHHHHHHHh--------
Q 001390 39 LTDKAELENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAI-------TGREKAEAEVVSLKQELDAALQ-------- 103 (1088)
Q Consensus 39 ~~~~~~~~~~~k~l~ekLs~a~~~~~~kd~lvkqh~kvaeeav-------~GweKaEaE~~slKkqLe~~~q-------- 103 (1088)
..+.+.|+..+..++..|..+......-+...+++.+..+++- .+-+.++..+..++.+.+....
T Consensus 599 ~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 678 (1201)
T PF12128_consen 599 AASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEE 678 (1201)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777888888888877777777777777766655543 3444444444444444433322
Q ss_pred hhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001390 104 QRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVEN 173 (1088)
Q Consensus 104 q~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn 173 (1088)
....++..+..++.+++.+..++....++.....++.-+.....|.....++..++..+...+....++.
T Consensus 679 ~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~ 748 (1201)
T PF12128_consen 679 RKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEA 748 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345666777777888888888888888777888888877788888888888888888888776665553
No 31
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.87 E-value=1.6 Score=57.06 Aligned_cols=76 Identities=18% Similarity=0.161 Sum_probs=40.3
Q ss_pred HHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhH-----HHHHHHHHHHHHH
Q 001390 189 DLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQH-----LESVKKIAKLESE 263 (1088)
Q Consensus 189 eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQh-----lEsvKKIakLEaE 263 (1088)
..++...++.-.+.+++.++.+++..+.+++.++..++. .+.+..++...+...+-+-+ .........+.+|
T Consensus 613 ~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e---l~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E 689 (1317)
T KOG0612|consen 613 KERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE---LKRENQERISDSEKEALEIKLERKLKMLQNELEQENAE 689 (1317)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444456666666777777777777777777666665 33344444444433222211 1223334455566
Q ss_pred HHHH
Q 001390 264 CQRL 267 (1088)
Q Consensus 264 CqRL 267 (1088)
|+|+
T Consensus 690 ~~~~ 693 (1317)
T KOG0612|consen 690 HHRL 693 (1317)
T ss_pred HHHH
Confidence 6666
No 32
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.85 E-value=2.7 Score=54.09 Aligned_cols=133 Identities=17% Similarity=0.128 Sum_probs=62.5
Q ss_pred HHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001390 190 LGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRV 269 (1088)
Q Consensus 190 Lkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~ 269 (1088)
-+...+.+.+++...+.+|+-+.+++.-.+.++....++-.--.++.+-...-.|...++....-=+|..-|+=-++.+.
T Consensus 404 aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~e~l~q~~~~ 483 (1174)
T KOG0933|consen 404 AKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQEEALKQRRAK 483 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence 33444455555555555555555555555555555555444444444444444444444433333333333332222222
Q ss_pred HHHhcCCChHHHhhhhHHHHhhcCCChhhhhccCCCCCCCcccccCCCCCCCCCcchhhhHHHHHHHhHHHHH
Q 001390 270 LVRKRLPGPAALAKMKNEVEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENN 342 (1088)
Q Consensus 270 l~rk~lpgpaa~a~mk~eve~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eeEnk 342 (1088)
+.+- +-+.+++++.|-+.. ....+.+ .||-|..-++..-+|.++|..|-+.+-
T Consensus 484 l~~~-------~~~lk~~~~~l~a~~----------~~~~f~Y---~dP~~nfdrs~V~G~Va~Li~vkd~~~ 536 (1174)
T KOG0933|consen 484 LHED-------IGRLKDELDRLLARL----------ANYEFTY---QDPEPNFDRSKVKGLVAKLIKVKDRSY 536 (1174)
T ss_pred HHHH-------HHHHHHHHHHHHhhh----------ccccccc---CCCCccchHHHHHHHHHHHheeCcchH
Confidence 2211 235666666654321 1111222 234444444455688999988877665
No 33
>PRK11637 AmiB activator; Provisional
Probab=96.82 E-value=0.46 Score=56.16 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHh
Q 001390 87 AEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQL 126 (1088)
Q Consensus 87 aEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQL 126 (1088)
.+.++..+++++....++...++.++..+...|+...++|
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi 84 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAI 84 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444
No 34
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.82 E-value=4.1 Score=55.71 Aligned_cols=204 Identities=23% Similarity=0.261 Sum_probs=108.2
Q ss_pred hHhhHhHhhhHHHHHHHHhhcccchhHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHH
Q 001390 43 AELENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKEC 122 (1088)
Q Consensus 43 ~~~~~~~k~l~ekLs~a~~~~~~kd~lvkqh~kvaeeav~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKec 122 (1088)
+.+...++.|+++|+.+...+......+..|. .+.+++...++-.++.+..++-..+-|.+-|...
T Consensus 139 e~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~--------------s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~ 204 (1822)
T KOG4674|consen 139 EALESENKDLNDQLKSSTKTLSELEARLQETQ--------------SEDVSSQLKEERLEQEKSLLESENKWLSRELSKV 204 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44566778888888877766665555555443 3345577788888888888888888888888888
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhh----hHh
Q 001390 123 MDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRT----QAE 198 (1088)
Q Consensus 123 mkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s----~~e 198 (1088)
.++|-..|-++.-.+ .++..--..+...+.+++....-+...|..|+..++....-+-.+++... .|.
T Consensus 205 ~ekll~~~re~s~~~--------~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~ 276 (1822)
T KOG4674|consen 205 NEKLLSLRREHSIEV--------EQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFE 276 (1822)
T ss_pred HHHHHHHHhhhhhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 887744433322111 11222222333334444444444445555566656554444444444433 344
Q ss_pred hhHHH-------HHhhcchHHHHHHHhhHHHHHHHHH---HHHHHHHHHHhHHhHHHHHHhHHHHH-HHHHHHHHHHHHH
Q 001390 199 ADSNA-------LMVRLDSTEKENASLKYEVRVLGKE---LEIRNEEREFNRRTADESHKQHLESV-KKIAKLESECQRL 267 (1088)
Q Consensus 199 aei~~-------Lq~rLE~~EKEn~sLKyEl~vlqkE---LEIr~eEre~s~ksaEaA~KQhlEsv-KKIakLEaECqRL 267 (1088)
+++.. ++..++.|..+.+.|...|..+.+= ..-++.|.......++.......+-. +++.+|+.++..-
T Consensus 277 ~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~a 356 (1822)
T KOG4674|consen 277 KELSTQKKLNELWKSKLEELSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDA 356 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44433 3455555666665555544444332 33344444444444444433333333 4444444444333
Q ss_pred H
Q 001390 268 R 268 (1088)
Q Consensus 268 r 268 (1088)
+
T Consensus 357 n 357 (1822)
T KOG4674|consen 357 N 357 (1822)
T ss_pred h
Confidence 3
No 35
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.76 E-value=0.082 Score=54.06 Aligned_cols=114 Identities=16% Similarity=0.167 Sum_probs=85.1
Q ss_pred hhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001390 788 FINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNE 867 (1088)
Q Consensus 788 LEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~q 867 (1088)
+..|+.++.+...+...+..++..+..+....+..|..|+..+..++..+..+++++......+......... ...
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~----~E~ 77 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSN----AEQ 77 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh----HHH
Confidence 4567777778888888888777777777777777777777777777777777777777777766655444432 227
Q ss_pred HHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhc
Q 001390 868 ACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTK 905 (1088)
Q Consensus 868 lqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~ 905 (1088)
+..+|..|+.+|+.-...+.+...++++.....+.++.
T Consensus 78 l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eR 115 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFER 115 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 88888889999888888888888888877766665554
No 36
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.69 E-value=1.1 Score=49.13 Aligned_cols=140 Identities=17% Similarity=0.258 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001390 88 EAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVRE--EQEQRIHDAVMKASMEFEQSLMILEEKLAETSKR 165 (1088)
Q Consensus 88 EaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rE--EqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~ 165 (1088)
+..+..+...|+.+......++..+..|...+.-+...|..+.+ ..-+...+.+.+...+.+.....||.+......+
T Consensus 14 ~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eer 93 (237)
T PF00261_consen 14 EERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEER 93 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33334444444444444444444444444444444444422111 1223333444455666666666666666666666
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHH
Q 001390 166 LAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNE 234 (1088)
Q Consensus 166 L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~e 234 (1088)
+..++.. |. .=..+..+.-.....+...+..+...|+..+.....+...+..++.+|.....
T Consensus 94 i~~lE~~---l~----ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~ 155 (237)
T PF00261_consen 94 IEELEQQ---LK----EAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGN 155 (237)
T ss_dssp HHHCHHH---HH----HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH
Confidence 6665555 22 11233444444444555555666666666666666666666666666655543
No 37
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.56 E-value=3.3 Score=51.34 Aligned_cols=291 Identities=20% Similarity=0.244 Sum_probs=139.7
Q ss_pred HhhHhHhhhHHHHHHHHhh--cccchhHHHHhHHHHHHHhhhhHHHHHH-------HHHHHHHHHHHHhhhhhHHHhhhh
Q 001390 44 ELENDVKNLNDKLFSALAE--CNAKDDLVKKHAKMAQEAITGREKAEAE-------VVSLKQELDAALQQRDTGEERLIH 114 (1088)
Q Consensus 44 ~~~~~~k~l~ekLs~a~~~--~~~kd~lvkqh~kvaeeav~GweKaEaE-------~~slKkqLe~~~qq~v~lEErvkh 114 (1088)
.+.+..|+|.+-|+++|.- ...||.++.+-.- -=||.-.+ +..|+.+..+.+.-...+-+.|+.
T Consensus 427 alr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~-------EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~ 499 (961)
T KOG4673|consen 427 ALRREQKSLKKELAAALLKDELAEKDEIINQLMA-------EGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITK 499 (961)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHH
Confidence 3677899999999999874 4446665554321 12333322 233333333333333333445555
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH--------
Q 001390 115 LDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQS---LMILEEKLAETSKRLAKLGVENTHLTKALLAK-------- 183 (1088)
Q Consensus 115 Ld~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~---~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~-------- 183 (1088)
|..-+.++.+ +...+|+-|+..++++-+-..+.+.. -..+...+++++.++..+.+-|..+-.-|+-+
T Consensus 500 L~sE~~~lk~-il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdea 578 (961)
T KOG4673|consen 500 LQSEENKLKS-ILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEA 578 (961)
T ss_pred HHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHH
Confidence 5555544433 33566677776677666544444322 22333455555555444444433332222111
Q ss_pred ---HHH----HHHHHhhhh-----------hHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHH--HHHHHHHHHHhHHhH
Q 001390 184 ---EKL----IEDLGKQRT-----------QAEADSNALMVRLDSTEKENASLKYEVRVLGKE--LEIRNEEREFNRRTA 243 (1088)
Q Consensus 184 ---~~i----i~eLkee~s-----------~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkE--LEIr~eEre~s~ksa 243 (1088)
..+ +.+|+..+. .++.+|++||.||+..|..+.+|-.++-.-..= ..|-+-.+.++.++
T Consensus 579 r~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~- 657 (961)
T KOG4673|consen 579 RERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAA- 657 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhh-
Confidence 111 233333332 577889999999999998888877654322111 11112222333222
Q ss_pred HHHHHhHHHHHH----------HHHHHH--HHHHHHHHHHHhcCCC-hHHHhhhhHHHHhhcCCChhhhhccCCCCCCCc
Q 001390 244 DESHKQHLESVK----------KIAKLE--SECQRLRVLVRKRLPG-PAALAKMKNEVEILGRESPETRRKRLNSSPLGS 310 (1088)
Q Consensus 244 EaA~KQhlEsvK----------KIakLE--aECqRLr~l~rk~lpg-paa~a~mk~eve~~~~~~~~~r~~~~~~~~~~~ 310 (1088)
+||.....+.- .++-++ +|-+.|-.+ +=-||. |--++=||.|-..|...--..|-| .+-
T Consensus 658 -tawereE~~l~~rL~dSQtllr~~v~~eqgekqElL~~-~~~l~s~~~q~sllraE~~~l~~~le~e~nr-~~~----- 729 (961)
T KOG4673|consen 658 -TAWEREERSLNERLSDSQTLLRINVLEEQGEKQELLSL-NFSLPSSPIQLSLLRAEQGQLSKSLEKERNR-AAE----- 729 (961)
T ss_pred -hHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHHHHHHH-hcCCCcchhHHHHHHHHHHHHHHHHHHHHHH-Hhh-----
Confidence 34444222111 111111 122222211 112333 666677888877654321111111 110
Q ss_pred ccccCCCCCCCC--CcchhhhHHHHHHHhHHHHHHHHHHHhhhhhhhhHHHHH
Q 001390 311 MVDSAFDNPPDT--PSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTM 361 (1088)
Q Consensus 311 ~~~~~~~~~~~~--~~~~~~~l~~rl~~~eeEnk~lke~L~~k~~ELq~sr~~ 361 (1088)
+.... ...+++.|-.|...++.|.+.+|+.+ +.+||-.++.
T Consensus 730 -------~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~---~q~lq~~ll~ 772 (961)
T KOG4673|consen 730 -------NRQEYLAAQEEADTLEGRANQLEVEIRELKRKH---KQELQEVLLH 772 (961)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHH
Confidence 00000 01134567777888888888887765 4566666554
No 38
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.45 E-value=1.3 Score=47.55 Aligned_cols=174 Identities=19% Similarity=0.162 Sum_probs=110.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001390 83 GREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAET 162 (1088)
Q Consensus 83 GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El 162 (1088)
|--+...|...|+..++.++.-+..|-+.+..|..-++...+-+ ....++......+...-..||..-..+
T Consensus 16 ~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal---------~~aK~l~eEledLk~~~~~lEE~~~~L 86 (193)
T PF14662_consen 16 NNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQAL---------QKAKALEEELEDLKTLAKSLEEENRSL 86 (193)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666666655555555554444444332222 222233333444444444445444444
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHh
Q 001390 163 SKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRT 242 (1088)
Q Consensus 163 ~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ks 242 (1088)
.++..-++.|+.+|. .=|..|.++...+-.+++.++.+-..+-.++..|+..|+.-..=+.-+...-.-..+.
T Consensus 87 ~aq~rqlEkE~q~L~-------~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~ 159 (193)
T PF14662_consen 87 LAQARQLEKEQQSLV-------AEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQ 159 (193)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444455555555 4556666777777777788888888888899999999988888887777777777788
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001390 243 ADESHKQHLESVKKIAKLESECQRLRVLVR 272 (1088)
Q Consensus 243 aEaA~KQhlEsvKKIakLEaECqRLr~l~r 272 (1088)
++....-..+...-+..|-.|..||..-++
T Consensus 160 i~eL~~~ieEy~~~teeLR~e~s~LEeql~ 189 (193)
T PF14662_consen 160 IEELKKTIEEYRSITEELRLEKSRLEEQLS 189 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888876553
No 39
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.40 E-value=5.6 Score=52.11 Aligned_cols=120 Identities=18% Similarity=0.176 Sum_probs=94.5
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHH
Q 001390 165 RLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTAD 244 (1088)
Q Consensus 165 ~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaE 244 (1088)
...+...+...|...+ ...-.+|.+....+..+-+.++.++...++++.-+...+..+..++.+...|.++-....+
T Consensus 441 ~i~~~~~ei~~L~~~~---~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~ 517 (1293)
T KOG0996|consen 441 EIQKCQTEIEQLEELL---EKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHE 517 (1293)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333 2455666777777777888888999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhhHHHHh
Q 001390 245 ESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEI 290 (1088)
Q Consensus 245 aA~KQhlEsvKKIakLEaECqRLr~l~rk~lpgpaa~a~mk~eve~ 290 (1088)
++.++..++.+++....+...+.+..+....| -|-+||.|...
T Consensus 518 ~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~---~l~~~k~e~~~ 560 (1293)
T KOG0996|consen 518 TGLKKVEELKGKLLASSESLKEKKTELDDLKE---ELPSLKQELKE 560 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHH
Confidence 99999999999999999999999988877653 34566666664
No 40
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.38 E-value=4.3 Score=51.88 Aligned_cols=165 Identities=25% Similarity=0.326 Sum_probs=103.3
Q ss_pred HHhHHHHHHHhh----hhHHHHHHHHHHHHHHH-------HHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHH
Q 001390 71 KKHAKMAQEAIT----GREKAEAEVVSLKQELD-------AALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHD 139 (1088)
Q Consensus 71 kqh~kvaeeav~----GweKaEaE~~slKkqLe-------~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~d 139 (1088)
++|.-|..+-+. --+...+++.+|...|+ ..+.+...+++-..++.+-+.++.+.+ +.-.+.+.
T Consensus 321 r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~-----d~~e~ki~ 395 (775)
T PF10174_consen 321 RQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDML-----DKKERKIN 395 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 788877776553 23344555555554444 444455556666666666666655555 33334444
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH------HhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHH
Q 001390 140 AVMKASMEFEQSLMILEEKLAETSKRLA------KLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEK 213 (1088)
Q Consensus 140 a~~kks~E~Ek~~~eLE~kL~El~k~L~------k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EK 213 (1088)
.+..++..++..-.+-..++.++..+|. ..+.-.+.|..++.++++++..|.+....++.+ .+.+++..++
T Consensus 396 ~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e---~~Eele~~~~ 472 (775)
T PF10174_consen 396 VLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKE---RQEELETYQK 472 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 4555555555555555566666666655 111112348899999999999999887665533 3567788888
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhHHhH
Q 001390 214 ENASLKYEVRVLGKELEIRNEEREFNRRTA 243 (1088)
Q Consensus 214 En~sLKyEl~vlqkELEIr~eEre~s~ksa 243 (1088)
++..++.++..++++|.-+...-..++..+
T Consensus 473 e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~ 502 (775)
T PF10174_consen 473 ELKELKAKLESLQKELSEKELQLEDAKEEA 502 (775)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhHH
Confidence 888888888888888777775555554443
No 41
>PRK09039 hypothetical protein; Validated
Probab=96.37 E-value=0.12 Score=59.71 Aligned_cols=63 Identities=11% Similarity=0.035 Sum_probs=53.2
Q ss_pred chhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHH
Q 001390 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQ 847 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~ 847 (1088)
.+++..++.++..++.++....+-+..-+.+...++..|.+++.++..++.+...++.++...
T Consensus 45 s~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~ 107 (343)
T PRK09039 45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAEL 107 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 677888888888888888888888888888888888999999999998888888888876643
No 42
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.28 E-value=7.7 Score=52.42 Aligned_cols=29 Identities=14% Similarity=0.107 Sum_probs=14.2
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHhhccCc
Q 001390 925 EIATASEKLAECQETILNLGKQLKALASP 953 (1088)
Q Consensus 925 EIaaAAeKLAECQETI~~LGKQLKaLa~~ 953 (1088)
+|..-.+.+.+|.+.|.-+-.+|..|.+.
T Consensus 889 ~L~el~~el~~l~~~~~~~~~~~~~~~~~ 917 (1311)
T TIGR00606 889 QLVELSTEVQSLIREIKDAKEQDSPLETF 917 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 34444445555555555555555444443
No 43
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.26 E-value=1.7 Score=55.28 Aligned_cols=225 Identities=19% Similarity=0.210 Sum_probs=126.9
Q ss_pred hhHhHhhhHHHHHHHHhhcccchhHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHH
Q 001390 45 LENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMD 124 (1088)
Q Consensus 45 ~~~~~k~l~ekLs~a~~~~~~kd~lvkqh~kvaeeav~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmk 124 (1088)
|..+|..|.-+|-.+...|+.| .+..+.+..--.....|+..++-.++-...+...|..++..|...|++..+
T Consensus 341 Lqsdve~Lr~rle~k~~~l~kk-------~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ 413 (775)
T PF10174_consen 341 LQSDVEALRFRLEEKNSQLEKK-------QAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDR 413 (775)
T ss_pred HHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666555444 445555555555667788889999999999999999999999999999888
Q ss_pred HhhhhhHHHH--------HHHHHHHHHHhHHHHHHHH-----------HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 001390 125 QLHFVREEQE--------QRIHDAVMKASMEFEQSLM-----------ILEEKLAETSKRLAKLGVENTHLTKALLAKEK 185 (1088)
Q Consensus 125 QLr~~rEEqE--------qki~da~~kks~E~Ek~~~-----------eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ 185 (1088)
+|...++-=. ......+-+...+.+..+. +....+....+++...++++..|..=|.+|+-
T Consensus 414 ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~ 493 (775)
T PF10174_consen 414 QLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKEL 493 (775)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 8855444222 0111112222222222222 23344555556677777888888888888888
Q ss_pred HHHHHHhhhhhH-------hhhHHHHHhhcchHHHHHHHhhHHHHH-------------HHHHHHHHHHHHHHhHHhHHH
Q 001390 186 LIEDLGKQRTQA-------EADSNALMVRLDSTEKENASLKYEVRV-------------LGKELEIRNEEREFNRRTADE 245 (1088)
Q Consensus 186 ii~eLkee~s~~-------eaei~~Lq~rLE~~EKEn~sLKyEl~v-------------lqkELEIr~eEre~s~ksaEa 245 (1088)
-+..++++.+.+ .++|+.|...++..-.++..|..++.- +..+..-..++..-++--+|-
T Consensus 494 ~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVER 573 (775)
T PF10174_consen 494 QLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTRYREESEKAQAEVER 573 (775)
T ss_pred HHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877733 334444444444444444433333333 222222222222222222222
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001390 246 SHKQHLESVKKIAKLESECQRLRVLVRKRLP 276 (1088)
Q Consensus 246 A~KQhlEsvKKIakLEaECqRLr~l~rk~lp 276 (1088)
.-.-+-+..+....+|.+|.+|...++|...
T Consensus 574 Ll~~L~~~E~EK~~ke~ki~~LekeLek~~~ 604 (775)
T PF10174_consen 574 LLDILREAENEKNDKEKKIGELEKELEKAQM 604 (775)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 2222233444445566777777777665443
No 44
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.24 E-value=0.96 Score=55.22 Aligned_cols=212 Identities=19% Similarity=0.176 Sum_probs=139.1
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHH---HHHHH
Q 001390 79 EAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQ---SLMIL 155 (1088)
Q Consensus 79 eav~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek---~~~eL 155 (1088)
++-.=|++++.++......++++......++-.++++....|.|...+..++-+..+. ...+.....++++ .+.++
T Consensus 124 elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl-~~~l~~~r~~ld~Etllr~d~ 202 (546)
T KOG0977|consen 124 ELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRL-REELARARKQLDDETLLRVDL 202 (546)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888788877777777777778888888888888899999888888777643 3333333333333 34677
Q ss_pred HHHHHHHHHHHHHhhhhhhh--------hhHHH------HHHHHHHHHHHhhhhhHhhhHHHHHhhcchH-HHHHHHhhH
Q 001390 156 EEKLAETSKRLAKLGVENTH--------LTKAL------LAKEKLIEDLGKQRTQAEADSNALMVRLDST-EKENASLKY 220 (1088)
Q Consensus 156 E~kL~El~k~L~k~~aEn~~--------Ls~~l------~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~-EKEn~sLKy 220 (1088)
+.++..|-.+|.-....|.. ..+.. .=+.++-..|++-.+++++....-+..+++| ++++...+.
T Consensus 203 ~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~ 282 (546)
T KOG0977|consen 203 QNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRT 282 (546)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 77777777665544422211 00000 1123455555666666666666666777776 334444444
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-cCCChH-------HHhhhhHHHHhh
Q 001390 221 EVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRK-RLPGPA-------ALAKMKNEVEIL 291 (1088)
Q Consensus 221 El~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk-~lpgpa-------a~a~mk~eve~~ 291 (1088)
......-......||....+-.+...+.++.++...-+-|++.+++|+..+.. +=++++ .|++||.|...+
T Consensus 283 ~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l 361 (546)
T KOG0977|consen 283 SAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQL 361 (546)
T ss_pred hhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 44444455777778888888899999999999999999999999999976432 223444 456777777654
No 45
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.21 E-value=0.59 Score=58.79 Aligned_cols=67 Identities=16% Similarity=0.273 Sum_probs=44.3
Q ss_pred hhHHHHHhhcchHHHHHHHhhHHHHHHHHH-HHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001390 199 ADSNALMVRLDSTEKENASLKYEVRVLGKE-LEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRK 273 (1088)
Q Consensus 199 aei~~Lq~rLE~~EKEn~sLKyEl~vlqkE-LEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk 273 (1088)
.+.+.|+..|..++-++.-|..-|.--..- |++. .++..|+.|+......+.+.|.|+..|+..+-.
T Consensus 587 ~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLf--------saLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 587 KDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLF--------SALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666665555433322221 3332 377889999999999999999999999986544
No 46
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.17 E-value=0.96 Score=56.98 Aligned_cols=141 Identities=21% Similarity=0.236 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhhhhhH---HHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001390 86 KAEAEVVSLKQELDAALQQRDTGEERLIHLD---AALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAET 162 (1088)
Q Consensus 86 KaEaE~~slKkqLe~~~qq~v~lEErvkhLd---~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El 162 (1088)
+.|+|+..||..|...-+.--.|+-+|..|+ ..+|.+..+++.=-|+=+.|++..+..+-++-..+ ..||.+|.+.
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l-~~LEkrL~eE 500 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSL-QQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 8999999999999999999999999966654 56888888886666666666666665533333222 3566666555
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHh----------hhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHH
Q 001390 163 SKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAE----------ADSNALMVRLDSTEKENASLKYEVRVLGKELEIR 232 (1088)
Q Consensus 163 ~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~e----------aei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr 232 (1088)
...-..+++. |.+= =.....++-..+. .--+.++.|...+|.|+.-|+.|+...+..+..+
T Consensus 501 ~~~R~~lEkQ-------L~eE--rk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~ 571 (697)
T PF09726_consen 501 RRQRASLEKQ-------LQEE--RKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIREL 571 (697)
T ss_pred HHHHHHHHHH-------HHHH--HHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433333333 2110 0000011111111 1112356666677777777777666666555444
Q ss_pred HHHH
Q 001390 233 NEER 236 (1088)
Q Consensus 233 ~eEr 236 (1088)
..+.
T Consensus 572 e~~~ 575 (697)
T PF09726_consen 572 ESEL 575 (697)
T ss_pred HHHH
Confidence 4433
No 47
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.12 E-value=0.62 Score=47.83 Aligned_cols=109 Identities=22% Similarity=0.192 Sum_probs=70.8
Q ss_pred hhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 001390 790 NVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEAC 869 (1088)
Q Consensus 790 qLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlq 869 (1088)
.+..+....+.....+.+.++.+...++.++.....+..+.+..+..+..+++++..+. +.++.++.++..+.
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt-------~el~~L~~EL~~l~ 79 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELT-------SELNQLELELDTLR 79 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 33444444444444555555555555555555555555555556665555555555544 45555667777777
Q ss_pred HHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhc
Q 001390 870 QKLSSLEVELEDKSNCCEELEATCLELQLQLESVTK 905 (1088)
Q Consensus 870 eKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~ 905 (1088)
.....|.++++..+..+.++...+..+..-|+..+.
T Consensus 80 sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ 115 (140)
T PF10473_consen 80 SEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQ 115 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 888888888888888888888888888888886664
No 48
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.09 E-value=0.22 Score=55.03 Aligned_cols=109 Identities=20% Similarity=0.253 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHhh
Q 001390 797 VRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINED--LDTQLKVARVDLNEACQKLSS 874 (1088)
Q Consensus 797 eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~--LesqL~eleaEl~qlqeKVsS 874 (1088)
.-...+..+...++.+...+.+++..++.++.+...++..++.+..+++.....+.. -..+|..++.++.....+..+
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~ 107 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINS 107 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444444444444444444444444443333333311 134677788888888888888
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhhhc
Q 001390 875 LEVELEDKSNCCEELEATCLELQLQLESVTK 905 (1088)
Q Consensus 875 LE~ELE~er~~lEEl~aKc~eLeeQLEr~e~ 905 (1088)
|+.+|.......+.+...+..++.++.+.+.
T Consensus 108 le~el~~l~~~~~~l~~~i~~l~~~~~~~e~ 138 (239)
T COG1579 108 LEDELAELMEEIEKLEKEIEDLKERLERLEK 138 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888877776554
No 49
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.06 E-value=6.2 Score=49.74 Aligned_cols=135 Identities=19% Similarity=0.184 Sum_probs=95.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHh
Q 001390 122 CMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEE---KLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAE 198 (1088)
Q Consensus 122 cmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~---kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~e 198 (1088)
..+.|..-|||++++-.+......+|+|+.| .||. ++.++..+-.++... |.-++.++.+..
T Consensus 379 rQReiE~qrEEerkkeie~rEaar~ElEkqR-qlewErar~qem~~Qk~reqe~--------------iv~~nak~~ql~ 443 (1118)
T KOG1029|consen 379 RQREIERQREEERKKEIERREAAREELEKQR-QLEWERARRQEMLNQKNREQEW--------------IVYLNAKKKQLQ 443 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHH--------------HHHHHHHHHHHH
Confidence 3455666678888888888887788888876 6664 344444443333322 233777778888
Q ss_pred hhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001390 199 ADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLV 271 (1088)
Q Consensus 199 aei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~ 271 (1088)
.+++.|.-++..+..++.+.+..+..+..+++..+..+++.+-.++....++.|...+..+|--|-|.|...+
T Consensus 444 ~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ql 516 (1118)
T KOG1029|consen 444 QELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQL 516 (1118)
T ss_pred HHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 8888888888888888888888888888888888888887777766666666666666666666666665444
No 50
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.04 E-value=0.2 Score=51.35 Aligned_cols=63 Identities=21% Similarity=0.252 Sum_probs=30.3
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHH
Q 001390 832 ILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCL 894 (1088)
Q Consensus 832 sLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~ 894 (1088)
.+...++.+|++|......+......|.++......+.-++..|+.+...-...++++..++.
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344455555555555554554444455544455555555555554444444444444444433
No 51
>PRK03918 chromosome segregation protein; Provisional
Probab=96.00 E-value=7.5 Score=49.80 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=27.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHH
Q 001390 82 TGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMD 124 (1088)
Q Consensus 82 ~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmk 124 (1088)
..++..+.++..+.+++.....+...+++.+.++...|.....
T Consensus 193 ~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~ 235 (880)
T PRK03918 193 ELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE 235 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666667777777777777766666666666655544443
No 52
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.99 E-value=0.43 Score=47.99 Aligned_cols=124 Identities=19% Similarity=0.207 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001390 86 KAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKR 165 (1088)
Q Consensus 86 KaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~ 165 (1088)
.++.++..++...+++..+...+.+.+...-...+++...- +++--.|....+.+..+...-..++..+.++...
T Consensus 7 ~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~Y-----E~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~ 81 (132)
T PF07926_consen 7 SLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKY-----ERELVKHAEDIKELQQLREELQELQQEINELKAE 81 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777777777777777777777777777787777 8888899999888888888888888888888888
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHH
Q 001390 166 LAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRV 224 (1088)
Q Consensus 166 L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~v 224 (1088)
+..+.... . ..-....+++..++.++..++.|++.+..+|.-|=..|..
T Consensus 82 ~~~a~~~l---~-------~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 82 AESAKAEL---E-------ESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHH---H-------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777663 3 4455666777788888899999999999888887665543
No 53
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.97 E-value=3.3 Score=52.71 Aligned_cols=58 Identities=12% Similarity=0.209 Sum_probs=41.8
Q ss_pred chHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHH
Q 001390 209 DSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQR 266 (1088)
Q Consensus 209 E~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqR 266 (1088)
+-+...|-.|.-.+..++.+++-+...+++..+=+|.++.+.+++.+.|..+.--.+.
T Consensus 451 ~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~ke 508 (1243)
T KOG0971|consen 451 EQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKE 508 (1243)
T ss_pred HHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3344556666667777888888888888888888888888888888877776443333
No 54
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.96 E-value=3.5 Score=49.94 Aligned_cols=31 Identities=13% Similarity=0.058 Sum_probs=12.5
Q ss_pred hhhHHHHHhhcchHHHHHHHhhHHHHHHHHH
Q 001390 198 EADSNALMVRLDSTEKENASLKYEVRVLGKE 228 (1088)
Q Consensus 198 eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkE 228 (1088)
+..+...+..++....++..|+.++..++.+
T Consensus 343 ~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~ 373 (562)
T PHA02562 343 KNKISTNKQSLITLVDKAKKVKAAIEELQAE 373 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333444444444444444444433
No 55
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.95 E-value=8.2 Score=49.86 Aligned_cols=170 Identities=18% Similarity=0.197 Sum_probs=89.4
Q ss_pred hHhhHhHhhhHHHHHHHHhhcccchhHHHHhHHHH--------------HHHhhhhHHHHHHHHHHHHHHHHHHhhhhhH
Q 001390 43 AELENDVKNLNDKLFSALAECNAKDDLVKKHAKMA--------------QEAITGREKAEAEVVSLKQELDAALQQRDTG 108 (1088)
Q Consensus 43 ~~~~~~~k~l~ekLs~a~~~~~~kd~lvkqh~kva--------------eeav~GweKaEaE~~slKkqLe~~~qq~v~l 108 (1088)
+..+.-++-++|||..--. .|++|-+-|-.=- -||..-.++.+....+.-..=+.+-.+....
T Consensus 187 ekI~ell~yieerLreLEe---EKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~ 263 (1200)
T KOG0964|consen 187 EKINELLKYIEERLRELEE---EKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKV 263 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 3455567778888875432 4666655443211 1233333333333333333223333333446
Q ss_pred HHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 001390 109 EERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIE 188 (1088)
Q Consensus 109 EErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~ 188 (1088)
+++...++..++++...|+.++++.+|-..+ -.+.-+.+..|+-++.+++.++.-....-....+.| .
T Consensus 264 ~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~-----~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l-------~ 331 (1200)
T KOG0964|consen 264 EDESEDLKCEIKELENKLTNLREEKEQLKAR-----ETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVL-------Q 331 (1200)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHH-------H
Confidence 7788888999999999999999977763322 233334466788888888888765544432233233 3
Q ss_pred HHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHH
Q 001390 189 DLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGK 227 (1088)
Q Consensus 189 eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqk 227 (1088)
.++++......++..+.-+...+..+-..++..|..+++
T Consensus 332 ~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~ 370 (1200)
T KOG0964|consen 332 KVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQ 370 (1200)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 333333333333333333444444444444444444443
No 56
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.87 E-value=7.8 Score=48.99 Aligned_cols=116 Identities=17% Similarity=0.182 Sum_probs=75.6
Q ss_pred chHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhhHHH
Q 001390 209 DSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEV 288 (1088)
Q Consensus 209 E~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk~lpgpaa~a~mk~ev 288 (1088)
+-+.+|.+....-+.+++.+|+-+..-+.-+.+..+.|.+=.-.-++|..+..+-+|---...|.+.-|. ..-++|+
T Consensus 280 s~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egf---ddk~~eL 356 (1265)
T KOG0976|consen 280 SVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGF---DDKLNEL 356 (1265)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch---hHHHHHH
Confidence 3345666666677788888888888888888777777777666666666555555554445566666554 5667777
Q ss_pred HhhcCCChhhhhccCCCCCCCcccccCCCCCCCCCcchhhhHHHHHHHhHHHHHHHHHHHhhhhhhh
Q 001390 289 EILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLKEVLDKKTNEL 355 (1088)
Q Consensus 289 e~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eeEnk~lke~L~~k~~EL 355 (1088)
|--. |-..+ ....+.+.+..+|+|-..|.+..+++.-.+
T Consensus 357 EKkr-d~al~---------------------------dvr~i~e~k~nve~elqsL~~l~aerqeQi 395 (1265)
T KOG0976|consen 357 EKKR-DMALM---------------------------DVRSIQEKKENVEEELQSLLELQAERQEQI 395 (1265)
T ss_pred HHHH-HHHHH---------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7411 10000 123467788888888888888888776544
No 57
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.83 E-value=0.79 Score=50.82 Aligned_cols=100 Identities=21% Similarity=0.220 Sum_probs=56.2
Q ss_pred hHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHH
Q 001390 68 DLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASME 147 (1088)
Q Consensus 68 ~lvkqh~kvaeeav~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E 147 (1088)
...+-|-+-..-|.+-.+.+-+.+..+...++++..|+..++..+..+...++....++-.+.. .+-..++......
T Consensus 24 ~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~---~~e~~aL~~E~~~ 100 (239)
T COG1579 24 PRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKD---ERELRALNIEIQI 100 (239)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---HHHHHHHHHHHHH
Confidence 3344455555555556666666777777777777777777777777777777766666633332 2333334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 001390 148 FEQSLMILEEKLAETSKRLAKLG 170 (1088)
Q Consensus 148 ~Ek~~~eLE~kL~El~k~L~k~~ 170 (1088)
|.+-...|+.+|.++..++.+..
T Consensus 101 ak~r~~~le~el~~l~~~~~~l~ 123 (239)
T COG1579 101 AKERINSLEDELAELMEEIEKLE 123 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555554444443333
No 58
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=95.80 E-value=0.42 Score=59.60 Aligned_cols=167 Identities=20% Similarity=0.235 Sum_probs=118.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhh------H-HHHHHHHHHHHHHhHHHHHHH
Q 001390 80 AITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVR------E-EQEQRIHDAVMKASMEFEQSL 152 (1088)
Q Consensus 80 av~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~r------E-EqEqki~da~~kks~E~Ek~~ 152 (1088)
||.|--.+..|++-. +--+...++.|+-|+.-|...|++-.+--+.-+ | ..=|.+--.+....+|..+.+
T Consensus 374 av~g~tniq~EIALA---~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~ 450 (861)
T PF15254_consen 374 AVSGSTNIQVEIALA---MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQ 450 (861)
T ss_pred hhhccccchhhhHhh---hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhH
Confidence 567888888888755 444556677777777777777777544321111 0 111444455566677777778
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHH
Q 001390 153 MILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIR 232 (1088)
Q Consensus 153 ~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr 232 (1088)
.-|+.+-+|+-+-++..+.||..|.+.+++|+.- |.+-+.+++.++..++.+++..-.+...+|+.+...++|=.||
T Consensus 451 e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~---l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL 527 (861)
T PF15254_consen 451 ELLQSKNEELLKVIENQKEENKRLRKMFQEKDQE---LLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQIL 527 (861)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHh
Confidence 8888888888888888999999999999988865 4455666777777777777777777888888777777776665
Q ss_pred HHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001390 233 NEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRK 273 (1088)
Q Consensus 233 ~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk 273 (1088)
... +....||+.|||.+.|-
T Consensus 528 ~it---------------------lrQrDaEi~RL~eLtR~ 547 (861)
T PF15254_consen 528 GIT---------------------LRQRDAEIERLRELTRT 547 (861)
T ss_pred hhH---------------------HHHHHHHHHHHHHHHHH
Confidence 532 33457889999999876
No 59
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.79 E-value=7.5 Score=48.11 Aligned_cols=268 Identities=21% Similarity=0.257 Sum_probs=142.4
Q ss_pred hHhHhhhHHHHHHHHhhcccchhHHHHhHHHHHHHhhh------------------------hHHHHHHHHHHHHHHHHH
Q 001390 46 ENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITG------------------------REKAEAEVVSLKQELDAA 101 (1088)
Q Consensus 46 ~~~~k~l~ekLs~a~~~~~~kd~lvkqh~kvaeeav~G------------------------weKaEaE~~slKkqLe~~ 101 (1088)
++.++..+-=|-...++| |.+.+-+|.||-|.-| -.++..|...++.+++++
T Consensus 58 e~k~k~~~~llK~yQ~Ei----D~LtkRsk~aE~afl~vye~L~eaPDP~pll~sa~~~l~k~~~~~~e~~~lk~~lee~ 133 (629)
T KOG0963|consen 58 EDKLKMVNPLLKSYQSEI----DNLTKRSKFAEAAFLDVYEKLIEAPDPVPLLASAAELLNKQQKASEENEELKEELEEV 133 (629)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHHHHHHhhCCCCchHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Confidence 444555555566777888 6777788888877632 123455566666666665
Q ss_pred Hhhhhh---HHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 001390 102 LQQRDT---GEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTK 178 (1088)
Q Consensus 102 ~qq~v~---lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~ 178 (1088)
...-.- .+.+|..|...+.+...++-.. -++.+..+-.+.-++|-.-...|......++.++..++.....|..
T Consensus 134 ~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~---ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~ 210 (629)
T KOG0963|consen 134 NNELADLKTQQVTVRNLKERLRKLEQLLEIF---IENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQS 210 (629)
T ss_pred HHHHhhhhhhHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544332 2334555555555555444111 1111112222223455555555555555555555555555444443
Q ss_pred HHHHHHHHHHHHHhh----hhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhH-HhHHHHHHhHHHH
Q 001390 179 ALLAKEKLIEDLGKQ----RTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNR-RTADESHKQHLES 253 (1088)
Q Consensus 179 ~l~~~~~ii~eLkee----~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~-ksaEaA~KQhlEs 253 (1088)
++..-.+-...++.. +..--+++.-++..|+..+..+-.|+.|+..+..++..-|....... -.+++..-.+-.-
T Consensus 211 a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~k 290 (629)
T KOG0963|consen 211 AIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQK 290 (629)
T ss_pred HHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHH
Confidence 333322222222222 34444555556666666666666666665555555555554444431 1122233333334
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHhhhhHHHHhhcCCChhhhhccCCCCCCCcccccCCCCCCCCCcchhhhHHHH
Q 001390 254 VKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPSKRINFLTEQ 333 (1088)
Q Consensus 254 vKKIakLEaECqRLr~l~rk~lpgpaa~a~mk~eve~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 333 (1088)
-..|+.|-.+++|+++-.++ ..+.+..+
T Consensus 291 d~~i~~L~~di~~~~~S~~~----------------------------------------------------e~e~~~~q 318 (629)
T KOG0963|consen 291 DSEIAQLSNDIERLEASLVE----------------------------------------------------EREKHKAQ 318 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------------------------------------------------HHHHHHHH
Confidence 45566666666666655444 22445677
Q ss_pred HHHhHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhHHH
Q 001390 334 LRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVE 373 (1088)
Q Consensus 334 l~~~eeEnk~lke~L~~k~~ELq~sr~~~a~t~skL~~~e 373 (1088)
+.++|-++++.+..|..--..|| +|+-|-.---.|+.|.
T Consensus 319 I~~le~~l~~~~~~leel~~kL~-~~sDYeeIK~ELsiLk 357 (629)
T KOG0963|consen 319 ISALEKELKAKISELEELKEKLN-SRSDYEEIKKELSILK 357 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hhccHHHHHHHHHHHH
Confidence 88888888887777777666665 3566766666666654
No 60
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.73 E-value=1.3 Score=54.83 Aligned_cols=187 Identities=19% Similarity=0.225 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHH-----HHHHHHHhHHHHHHHHHHHHH
Q 001390 84 REKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRI-----HDAVMKASMEFEQSLMILEEK 158 (1088)
Q Consensus 84 weKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki-----~da~~kks~E~Ek~~~eLE~k 158 (1088)
++..+.|+..|+.+++++..+...+++.++.+...++.....+...+.+.+..- +..+..-..+-+.-..+|+.-
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~ 402 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQAL 402 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 678899999999999999999999999999999999988887765544443222 211111111112222233333
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001390 159 LAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREF 238 (1088)
Q Consensus 159 L~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~ 238 (1088)
+.....+|..+..+=..-..-| ..-++.|++....-..+......++..+..+...+..+++.-.....-|..+-+.
T Consensus 403 v~~s~~rl~~L~~qWe~~R~pL---~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~ 479 (594)
T PF05667_consen 403 VEASEQRLVELAQQWEKHRAPL---IEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEK 479 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333211000001 1233444444444444455555556666666666666655555544444433332
Q ss_pred hHHhHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001390 239 NRRTAD--ESHKQHLESVKKIAKLESECQRLRVLVRK 273 (1088)
Q Consensus 239 s~ksaE--aA~KQhlEsvKKIakLEaECqRLr~l~rk 273 (1088)
-.+.+. +=-...+|+++.|.|..+|+.+.-.-+|-
T Consensus 480 ~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~ 516 (594)
T PF05667_consen 480 LPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRE 516 (594)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 222211 12467899999999999999988766653
No 61
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=95.73 E-value=2.8 Score=45.24 Aligned_cols=144 Identities=18% Similarity=0.269 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001390 87 AEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRL 166 (1088)
Q Consensus 87 aEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L 166 (1088)
|+++|++++..+--++..--..++|++-+-.+|++..+-- .+.-+...++.......+.-...++.+|.++....
T Consensus 2 ae~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~-----dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~ia 76 (205)
T KOG1003|consen 2 AEADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAA-----DESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIA 76 (205)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 6788999999988888888888999988888888888755 33334444455555555655567777777776655
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHH
Q 001390 167 AKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADES 246 (1088)
Q Consensus 167 ~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA 246 (1088)
.....+. .+.-.++.-++.+++....+.+..+.++..|-++++++...+..+.---+..-+..|..
T Consensus 77 E~adrK~--------------eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~ 142 (205)
T KOG1003|consen 77 EKADRKY--------------EEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKY 142 (205)
T ss_pred HHHHHHH--------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHH
Confidence 5444442 22222334456666666677777777777777777777777666554444444443443
Q ss_pred HHh
Q 001390 247 HKQ 249 (1088)
Q Consensus 247 ~KQ 249 (1088)
.++
T Consensus 143 e~~ 145 (205)
T KOG1003|consen 143 EEE 145 (205)
T ss_pred HHH
Confidence 333
No 62
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.71 E-value=2.9 Score=53.17 Aligned_cols=124 Identities=22% Similarity=0.203 Sum_probs=80.7
Q ss_pred HHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001390 94 LKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVEN 173 (1088)
Q Consensus 94 lKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn 173 (1088)
|+.|+.+++.+.-.|+-+-+.=..+|+++.+ +.-..++....+..+-.+.++|+++|.+++.|
T Consensus 229 Lr~QvrdLtEkLetlR~kR~EDk~Kl~Elek----------------mkiqleqlqEfkSkim~qqa~Lqrel~raR~e- 291 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLKRAEDKAKLKELEK----------------MKIQLEQLQEFKSKIMEQQADLQRELKRARKE- 291 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 5555555555555554444444455555554 11113444455667788888999999888888
Q ss_pred hhhhHHHHHHHHHHHHHHhhhh-----hHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001390 174 THLTKALLAKEKLIEDLGKQRT-----QAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREF 238 (1088)
Q Consensus 174 ~~Ls~~l~~~~~ii~eLkee~s-----~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~ 238 (1088)
+..++..+++...+|.+-.. .++.|+. ..|-++++-+.-.++-.+..++.+||||..|.+-
T Consensus 292 --~keaqe~ke~~k~emad~ad~iEmaTldKEmA--EERaesLQ~eve~lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 292 --AKEAQEAKERYKEEMADTADAIEMATLDKEMA--EERAESLQQEVEALKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666777777666655433 2333333 4677788888888888888888999999888764
No 63
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.54 E-value=8.7 Score=47.11 Aligned_cols=220 Identities=23% Similarity=0.272 Sum_probs=112.5
Q ss_pred hHhHhhhHHHHHHHHhh-cccch--hHHHHhHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHH
Q 001390 46 ENDVKNLNDKLFSALAE-CNAKD--DLVKKHAKMAQEAITG--REKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALK 120 (1088)
Q Consensus 46 ~~~~k~l~ekLs~a~~~-~~~kd--~lvkqh~kvaeeav~G--weKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLK 120 (1088)
.+-+..|+.||-.++.. ..+.. .+++..++=.+.++.+ +..+..++...+.+|..+..-.....+.|..+..-+.
T Consensus 68 kr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~ 147 (522)
T PF05701_consen 68 KRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQELA 147 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578888888877754 22222 4566666666666655 5555555555555555444433333333222221111
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhhhHHHHHHHHHHHHHHhhhhh
Q 001390 121 ECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVEN----THLTKALLAKEKLIEDLGKQRTQ 196 (1088)
Q Consensus 121 ecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn----~~Ls~~l~~~~~ii~eLkee~s~ 196 (1088)
-... .+..-.++.-++... +....+...+|-..|..++..|......+ ..-..++.+|+..+..++..+.+
T Consensus 148 ~~~~----~k~~A~~~aeea~~~-a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~lee 222 (522)
T PF05701_consen 148 SALD----AKNAALKQAEEAVSA-AEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEE 222 (522)
T ss_pred HHHH----HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 111222333333333 45555555566666666666544332211 01122344555555666666666
Q ss_pred HhhhHHHHHhhc---chHHHHHHHhhHHHHHHHHHHHHHHHHHHHh------------HHhHHHHHHhHHHHHHHHHHHH
Q 001390 197 AEADSNALMVRL---DSTEKENASLKYEVRVLGKELEIRNEEREFN------------RRTADESHKQHLESVKKIAKLE 261 (1088)
Q Consensus 197 ~eaei~~Lq~rL---E~~EKEn~sLKyEl~vlqkELEIr~eEre~s------------~ksaEaA~KQhlEsvKKIakLE 261 (1088)
++.++..|...+ ..++.++.....++..++.+|.-..+ ..+. .-.+..+...+.+....+.+..
T Consensus 223 ae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~-~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k 301 (522)
T PF05701_consen 223 AEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKE-SKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAK 301 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655 33345555555666666666666555 1111 1225555666666666666666
Q ss_pred HHHHHHHHHH
Q 001390 262 SECQRLRVLV 271 (1088)
Q Consensus 262 aECqRLr~l~ 271 (1088)
.|...|+..|
T Consensus 302 ~E~~~L~~~v 311 (522)
T PF05701_consen 302 EEASSLRASV 311 (522)
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 64
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.46 E-value=5.7 Score=47.40 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHh
Q 001390 88 EAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQL 126 (1088)
Q Consensus 88 EaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQL 126 (1088)
+.++..+..++.+.....-.++.+++.++..|..+..|.
T Consensus 72 e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 72 ETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444443
No 65
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.46 E-value=0.74 Score=58.14 Aligned_cols=157 Identities=17% Similarity=0.140 Sum_probs=86.7
Q ss_pred hhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhH---HHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001390 788 FINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSK---EVIEDQVKLQKMINEDLDTQLKVARVD 864 (1088)
Q Consensus 788 LEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~---selEeQLk~~~e~le~LesqL~eleaE 864 (1088)
+++++.....++++++..+-.....+.+.+.+..++..|......++++. ++++.+.-....+|+.+...|+.++.+
T Consensus 360 ~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~ 439 (980)
T KOG0980|consen 360 IEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQE 439 (980)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554444433333333333344444433333333333 555555555566666666666666666
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhcCCCC--cccchhhhhhhhhhHhHHHHHhhHHHHHHHHHH
Q 001390 865 LNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTKSGIP--TDELKQDEKQIQTDWEIATASEKLAECQETILN 942 (1088)
Q Consensus 865 l~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~~~~~--~~~~~~e~~~~kqe~EIaaAAeKLAECQETI~~ 942 (1088)
-..+..|..-..+.++-......+.......|..+|++....... ..-..+.+..-..+.|++....++++-|.++-+
T Consensus 440 h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~ 519 (980)
T KOG0980|consen 440 HADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSN 519 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 666666666555555555555556666666666666554432211 011123344455666888999999999999877
Q ss_pred HH
Q 001390 943 LG 944 (1088)
Q Consensus 943 LG 944 (1088)
+.
T Consensus 520 ~~ 521 (980)
T KOG0980|consen 520 LA 521 (980)
T ss_pred HH
Confidence 64
No 66
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.32 E-value=8.5 Score=48.21 Aligned_cols=190 Identities=25% Similarity=0.320 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhh-------HHHhhhhhHHHHHHHHHHhhhhhHHHH--HHHHHHHH----HHhHHHHHHHH
Q 001390 87 AEAEVVSLKQELDAALQQRDT-------GEERLIHLDAALKECMDQLHFVREEQE--QRIHDAVM----KASMEFEQSLM 153 (1088)
Q Consensus 87 aEaE~~slKkqLe~~~qq~v~-------lEErvkhLd~aLKecmkQLr~~rEEqE--qki~da~~----kks~E~Ek~~~ 153 (1088)
..+|+..|+++++.+..+.-+ |-.-+...+..|.+..+.++..++... .++.+.+. ..++....= .
T Consensus 85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN-~ 163 (617)
T PF15070_consen 85 LQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQN-R 163 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhH-H
Confidence 344455555555555443322 222223335566666666666555432 22222111 112222222 3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHH----------
Q 001390 154 ILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVR---------- 223 (1088)
Q Consensus 154 eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~---------- 223 (1088)
+|..+|.+++..+-++-.+|..|.-+|+.-.-+..+|..+...+...+..++.+|+.-..+..+|+..-.
T Consensus 164 eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~ 243 (617)
T PF15070_consen 164 ELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYV 243 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999988888877777888999988899999999998888888888888888777777644211
Q ss_pred ----HHHHH--------------HHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-cCCC
Q 001390 224 ----VLGKE--------------LEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRK-RLPG 277 (1088)
Q Consensus 224 ----vlqkE--------------LEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk-~lpg 277 (1088)
-+..+ ++-+.-+..-.+-.++.+.+.+.+....+..+-.+=+.|++.++- .+||
T Consensus 244 a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~~~ 316 (617)
T PF15070_consen 244 AAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSLMALPG 316 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCC
Confidence 11122 223333333333344555555555555555555566666655543 4555
No 67
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.18 E-value=12 Score=46.41 Aligned_cols=183 Identities=21% Similarity=0.291 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHHhhhh-----hHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001390 89 AEVVSLKQELDAALQQRD-----TGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETS 163 (1088)
Q Consensus 89 aE~~slKkqLe~~~qq~v-----~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~ 163 (1088)
.++..++.++..+..... ..++.+..+...+..+-..+ ++|-.....+.+...........+..+...+.
T Consensus 252 ~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~l-----e~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~ 326 (560)
T PF06160_consen 252 EEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDIL-----EKEVEAKKYVEKNLKELYEYLEHAKEQNKELK 326 (560)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433322 23344444555555555555 55666666666656655555555556666665
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhH
Q 001390 164 KRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTA 243 (1088)
Q Consensus 164 k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksa 243 (1088)
.++..+.. ++.|.+-- ......+.++...+...+..+..+++.-..=.+.+...+..+.+.|+-..++..--...+
T Consensus 327 ~e~~~v~~-sY~L~~~e---~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l 402 (560)
T PF06160_consen 327 EELERVSQ-SYTLNHNE---LEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESL 402 (560)
T ss_pred HHHHHHHH-hcCCCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555543 23444211 235567777777888888888888888888888999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH-HhcCCC-hHH
Q 001390 244 DESHKQHLESVKKIAKLESECQRLRVLV-RKRLPG-PAA 280 (1088)
Q Consensus 244 EaA~KQhlEsvKKIakLEaECqRLr~l~-rk~lpg-paa 280 (1088)
...++...+..+++.++...++..+-.| +..||| |..
T Consensus 403 ~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~ 441 (560)
T PF06160_consen 403 QSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPED 441 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 9999999999999999999999998555 557999 443
No 68
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.13 E-value=2.3 Score=47.93 Aligned_cols=163 Identities=18% Similarity=0.221 Sum_probs=105.4
Q ss_pred chhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHH-
Q 001390 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARV- 863 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~elea- 863 (1088)
..++.+++.++.+++++|+++..+++.+..++.+++.++.+++.++..++..+..+++.|....+.|. .|+.-+..
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~---~raRAmq~n 113 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLK---KRARAMQVN 113 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHc
Confidence 45788899999999999999999999999999999999999999999999999999998888776663 22211111
Q ss_pred --------------HHHHHHHHHhhHHHHHHHhhhhhH-------HHHHHHHHHHHHHHhhhcCCCCcccc---hhhhhh
Q 001390 864 --------------DLNEACQKLSSLEVELEDKSNCCE-------ELEATCLELQLQLESVTKSGIPTDEL---KQDEKQ 919 (1088)
Q Consensus 864 --------------El~qlqeKVsSLE~ELE~er~~lE-------El~aKc~eLeeQLEr~e~~~~~~~~~---~~e~~~ 919 (1088)
-|..+..|+..+..-+.+-+..++ .+..+-..++.+++.+..-- ..... .=..++
T Consensus 114 G~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~-~e~e~~~~~L~~qk 192 (265)
T COG3883 114 GTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQ-NELETQLNSLNSQK 192 (265)
T ss_pred CChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 156677777766655554444433 33333333333333322100 00000 001233
Q ss_pred hhhhHhHHHHHhhHHHHHHHHHHHHHHHhhccC
Q 001390 920 IQTDWEIATASEKLAECQETILNLGKQLKALAS 952 (1088)
Q Consensus 920 ~kqe~EIaaAAeKLAECQETI~~LGKQLKaLa~ 952 (1088)
..++.=|+.++-+.|+-+.-+..|-+|. +++.
T Consensus 193 ~e~~~l~~~~aa~~a~~~~e~a~l~~qk-a~a~ 224 (265)
T COG3883 193 AEKNALIAALAAKEASALGEKAALEEQK-ALAE 224 (265)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHH
Confidence 4455567777888888888888888665 5554
No 69
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.11 E-value=1.2 Score=45.70 Aligned_cols=11 Identities=55% Similarity=0.552 Sum_probs=5.1
Q ss_pred HHHHHHHHhhc
Q 001390 940 ILNLGKQLKAL 950 (1088)
Q Consensus 940 I~~LGKQLKaL 950 (1088)
+.-|-+||+.|
T Consensus 128 ve~L~~ql~~L 138 (140)
T PF10473_consen 128 VEMLQKQLKEL 138 (140)
T ss_pred HHHHHHHHhhh
Confidence 34444555444
No 70
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.05 E-value=0.081 Score=66.39 Aligned_cols=128 Identities=26% Similarity=0.341 Sum_probs=71.5
Q ss_pred HhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHH--------hHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001390 197 AEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRR--------TADESHKQHLESVKKIAKLESECQRLR 268 (1088)
Q Consensus 197 ~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~k--------saEaA~KQhlEsvKKIakLEaECqRLr 268 (1088)
...++..|+.++..+++++..|+.++.+++.+|+-+.---++... .==++.. +.--...+..|.+||.+|+
T Consensus 501 ~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~-~~~k~~~l~~L~~En~~L~ 579 (722)
T PF05557_consen 501 LSEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKA-EQIKKSTLEALQAENEDLL 579 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777777777777666542200011111 1011122 2223578999999999999
Q ss_pred HHHHhcCCChHHHhhhhHHHHhhcCCChhhhhccCCCCCCCcccccCCCCCCCCCcchhhhHHHHHHHhHHHHHHHHHHH
Q 001390 269 VLVRKRLPGPAALAKMKNEVEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLKEVL 348 (1088)
Q Consensus 269 ~l~rk~lpgpaa~a~mk~eve~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eeEnk~lke~L 348 (1088)
..++.--.|.. ..+ ...| .. ......+.+.-|-.++...+--+..||++.
T Consensus 580 ~~l~~le~~~~--------------~~~-------~~~p--------~~-~~~~~~~e~~~l~~~~~~~ekr~~RLkevf 629 (722)
T PF05557_consen 580 ARLRSLEEGNS--------------QPV-------DAVP--------TS-SLESQEKEIAELKAELASAEKRNQRLKEVF 629 (722)
T ss_dssp HHHHHHTTTT----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCCC--------------CCc-------cccc--------ch-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99976322211 000 0000 00 011233456667788888888899999999
Q ss_pred hhhhhhh
Q 001390 349 DKKTNEL 355 (1088)
Q Consensus 349 ~~k~~EL 355 (1088)
++|-.|.
T Consensus 630 ~~ks~eF 636 (722)
T PF05557_consen 630 KAKSQEF 636 (722)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998876
No 71
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.05 E-value=2.4 Score=45.63 Aligned_cols=159 Identities=25% Similarity=0.303 Sum_probs=86.7
Q ss_pred hHhhHhHhhhHHHHHHHHhhcccchhHHHHhHHHHHHHhhhhHHHHH-----------HHHHHHHHHHHHHhhhhhHHHh
Q 001390 43 AELENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEA-----------EVVSLKQELDAALQQRDTGEER 111 (1088)
Q Consensus 43 ~~~~~~~k~l~ekLs~a~~~~~~kd~lvkqh~kvaeeav~GweKaEa-----------E~~slKkqLe~~~qq~v~lEEr 111 (1088)
-+|...+..|..+|....-|- .++++--+-=+-|+...|..++ |+..|+.+|..+..+...++-+
T Consensus 15 ~~L~n~l~elq~~l~~l~~EN----k~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~k 90 (194)
T PF15619_consen 15 KELQNELAELQRKLQELRKEN----KTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERK 90 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666655444 2233333333336666655554 4556666666666666666666
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 001390 112 LIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLG 191 (1088)
Q Consensus 112 vkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLk 191 (1088)
++..++-|-+...++ +++..-+.. +.+.. +.+|..+|..++..+......+..|.+-|.
T Consensus 91 lk~~~~el~k~~~~l--------~~L~~L~~d--knL~e-ReeL~~kL~~~~~~l~~~~~ki~~Lek~le---------- 149 (194)
T PF15619_consen 91 LKDKDEELLKTKDEL--------KHLKKLSED--KNLAE-REELQRKLSQLEQKLQEKEKKIQELEKQLE---------- 149 (194)
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHc--CCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 666666666555555 333333221 22222 557778888888777777766555553222
Q ss_pred hhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHH
Q 001390 192 KQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRN 233 (1088)
Q Consensus 192 ee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~ 233 (1088)
-.-...+..|....+...+++.++..+..|+..++
T Consensus 150 -------L~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~ 184 (194)
T PF15619_consen 150 -------LENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLN 184 (194)
T ss_pred -------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122345555555666666666666665555444
No 72
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.01 E-value=19 Score=47.86 Aligned_cols=81 Identities=19% Similarity=0.160 Sum_probs=54.9
Q ss_pred HHHHHHHHHH-HHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001390 86 KAEAEVVSLK-QELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQE--QRIHDAVMKASMEFEQSLMILEEKLAET 162 (1088)
Q Consensus 86 KaEaE~~slK-kqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqE--qki~da~~kks~E~Ek~~~eLE~kL~El 162 (1088)
+...+...|+ ++..-+++.....++++.+..+.++++..++|+.+++-+ ++..+.+........+++.+|+....++
T Consensus 476 ~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~ 555 (1317)
T KOG0612|consen 476 KLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDM 555 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhh
Confidence 4444555555 455556667777788888888888888888888877655 5555556666666777777777666666
Q ss_pred HHHH
Q 001390 163 SKRL 166 (1088)
Q Consensus 163 ~k~L 166 (1088)
..+.
T Consensus 556 ~~e~ 559 (1317)
T KOG0612|consen 556 RAES 559 (1317)
T ss_pred hhhH
Confidence 5443
No 73
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.01 E-value=5.4 Score=48.30 Aligned_cols=135 Identities=13% Similarity=0.130 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchH-------------
Q 001390 145 SMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDST------------- 211 (1088)
Q Consensus 145 s~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~------------- 211 (1088)
..++......++.++..++.++.....+...+. ..+..+......++.++..++..+..+
T Consensus 222 ~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~-------~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~ 294 (562)
T PHA02562 222 YDELVEEAKTIKAEIEELTDELLNLVMDIEDPS-------AALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQI 294 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcC
Confidence 344444444455555555555544443332233 333344444444444444443333322
Q ss_pred ---HHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhhHHH
Q 001390 212 ---EKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEV 288 (1088)
Q Consensus 212 ---EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk~lpgpaa~a~mk~ev 288 (1088)
......|...+..++.+++.+.....--.. ...+..+..+++..++.+....+..+.... ......+.|+
T Consensus 295 ~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~----~~~~~~~~~~~i~el~~~i~~~~~~i~~~~---~~~~~l~~ei 367 (562)
T PHA02562 295 SEGPDRITKIKDKLKELQHSLEKLDTAIDELEE----IMDEFNEQSKKLLELKNKISTNKQSLITLV---DKAKKVKAAI 367 (562)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 233444444444444444444443332211 122344445555555555555444332211 1124567777
Q ss_pred HhhcC
Q 001390 289 EILGR 293 (1088)
Q Consensus 289 e~~~~ 293 (1088)
+.|..
T Consensus 368 ~~l~~ 372 (562)
T PHA02562 368 EELQA 372 (562)
T ss_pred HHHHh
Confidence 77664
No 74
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.99 E-value=0.12 Score=54.85 Aligned_cols=99 Identities=23% Similarity=0.279 Sum_probs=58.6
Q ss_pred CCchhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001390 783 EPGSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVAR 862 (1088)
Q Consensus 783 ~~~eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~ele 862 (1088)
...+|+..+...+..+..+|.....+++.+...+.+....|..|+.++..++..+..++..++.....++.+..++..++
T Consensus 78 ~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~ 157 (194)
T PF08614_consen 78 KLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQ 157 (194)
T ss_dssp ------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHH
Q 001390 863 VDLNEACQKLSSLEVELED 881 (1088)
Q Consensus 863 aEl~qlqeKVsSLE~ELE~ 881 (1088)
++++.+..|+..|+.|-..
T Consensus 158 l~~~~~e~k~~~l~~En~~ 176 (194)
T PF08614_consen 158 LQLNMLEEKLRKLEEENRE 176 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999888777544
No 75
>PRK09039 hypothetical protein; Validated
Probab=94.98 E-value=0.66 Score=53.75 Aligned_cols=115 Identities=12% Similarity=0.029 Sum_probs=52.0
Q ss_pred chhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhH-------HHHHHHHHHHHHHhhhHHHH
Q 001390 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSK-------EVIEDQVKLQKMINEDLDTQ 857 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~-------selEeQLk~~~e~le~Lesq 857 (1088)
.+++..++.++..+-.-+.--......+..++.++..++..++.+...++... ..++.++..+...+......
T Consensus 52 ~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~ 131 (343)
T PRK09039 52 DSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQV 131 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHH
Confidence 67889999999888755554444444444444444444433333333333332 23333333333333333333
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001390 858 LKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQ 899 (1088)
Q Consensus 858 L~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQ 899 (1088)
+++.+-++..+...|.+|+..+......+...+.+..+.+.+
T Consensus 132 ~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~ 173 (343)
T PRK09039 132 SARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAK 173 (343)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333
No 76
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.96 E-value=6.6 Score=42.42 Aligned_cols=104 Identities=28% Similarity=0.404 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHH
Q 001390 154 ILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRN 233 (1088)
Q Consensus 154 eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~ 233 (1088)
.++.++-+.+.+|.+...++.+|.+.. +.+. =.+.+.|+.+|+.++.+.......+..+.+.+++-+
T Consensus 86 ~~~~klk~~~~el~k~~~~l~~L~~L~-----------~dkn--L~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~ 152 (194)
T PF15619_consen 86 ELERKLKDKDEELLKTKDELKHLKKLS-----------EDKN--LAEREELQRKLSQLEQKLQEKEKKIQELEKQLELEN 152 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HcCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555666666666666666554444211 1111 112455666777777777777777777777655544
Q ss_pred HHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001390 234 EEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRK 273 (1088)
Q Consensus 234 eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk 273 (1088)
..+.++- -.-.+.+.+...++..|..||++|+..+.-
T Consensus 153 --k~~~rql-~~e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 153 --KSFRRQL-ASEKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred --hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 567788888999999999999999877653
No 77
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=94.96 E-value=8.9 Score=43.90 Aligned_cols=196 Identities=19% Similarity=0.239 Sum_probs=106.2
Q ss_pred hhHhhHhHhhhHHHHHHHHhhcc----cchhHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHH
Q 001390 42 KAELENDVKNLNDKLFSALAECN----AKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDA 117 (1088)
Q Consensus 42 ~~~~~~~~k~l~ekLs~a~~~~~----~kd~lvkqh~kvaeeav~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~ 117 (1088)
++.|+..|.+.--+|++|+.+.. +|-|+=----..-.|=+.=++|+--++..++-.-+-+.+|.+..+-++..|+.
T Consensus 86 kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~ 165 (305)
T PF14915_consen 86 KERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEI 165 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999852 23222211112222334455777777766665555555555555554444444
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhh
Q 001390 118 ALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMIL---EEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQR 194 (1088)
Q Consensus 118 aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eL---E~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~ 194 (1088)
.|-..-+ ++.+++--+|.++.+| +-++-+++.....+ .++.
T Consensus 166 elh~trd---------------aLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne---------------------~~kv 209 (305)
T PF14915_consen 166 ELHHTRD---------------ALREKTLALESVQRDLSQTQCQIKEIEHMYQNE---------------------QDKV 209 (305)
T ss_pred HHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---------------------HHHH
Confidence 3333332 3333333333333222 12222332222222 2222
Q ss_pred hhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhH--------HHHHHhHHHHHHHHHHHHHHHHH
Q 001390 195 TQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTA--------DESHKQHLESVKKIAKLESECQR 266 (1088)
Q Consensus 195 s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksa--------EaA~KQhlEsvKKIakLEaECqR 266 (1088)
..+...-+.++.||..++.+|.=|+..|.-+.+.-+....---.....+ -...+|.+=...+-..|-.+|..
T Consensus 210 ~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~ 289 (305)
T PF14915_consen 210 NKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNH 289 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3333444566778888888888888888887776554332222222222 23445555556666778888988
Q ss_pred HHHHHHh
Q 001390 267 LRVLVRK 273 (1088)
Q Consensus 267 Lr~l~rk 273 (1088)
|+.-+-+
T Consensus 290 LkEr~~q 296 (305)
T PF14915_consen 290 LKERLYQ 296 (305)
T ss_pred HHHHHHH
Confidence 8866543
No 78
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=94.87 E-value=7 Score=44.73 Aligned_cols=172 Identities=20% Similarity=0.229 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHH-----HHHHHHHHHHhHHHHHHH---------
Q 001390 87 AEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQE-----QRIHDAVMKASMEFEQSL--------- 152 (1088)
Q Consensus 87 aEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqE-----qki~da~~kks~E~Ek~~--------- 152 (1088)
.-..+.+++.+.++...+...|.++-..+...+-++++..+.+++..+ .+....+....+.++...
T Consensus 53 ~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~ 132 (294)
T COG1340 53 LREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEE 132 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHH
Confidence 344577888888888888888888888888888888888877777665 222233333333333222
Q ss_pred -HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHH
Q 001390 153 -MILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEI 231 (1088)
Q Consensus 153 -~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEI 231 (1088)
.++-.+|.++.++|...... .+..+++...-+++..+......+-.++..|-.+.+..-.++--
T Consensus 133 E~~lvq~I~~L~k~le~~~k~---------------~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k 197 (294)
T COG1340 133 ERELVQKIKELRKELEDAKKA---------------LEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIK 197 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12334444444444333221 23445555556667777777777777777777777777777777
Q ss_pred HHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001390 232 RNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRK 273 (1088)
Q Consensus 232 r~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk 273 (1088)
.-++.+--++-|+..|....+..++|..+..+...++.-+|.
T Consensus 198 ~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre 239 (294)
T COG1340 198 LFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRE 239 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 888888888888999999999999998888888877766654
No 79
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.80 E-value=14 Score=45.39 Aligned_cols=69 Identities=22% Similarity=0.321 Sum_probs=31.9
Q ss_pred hHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001390 196 QAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLV 271 (1088)
Q Consensus 196 ~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~ 271 (1088)
.+..++++.+..|+....+...|+..+..+..|| +-.+..+.....+.....-.|..|+++..+.|..+
T Consensus 285 s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~EL-------e~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 285 SAKKELEEAKKELEKAKEEASSLRASVESLRSEL-------EKEKEELERLKEREKEASSEVSSLEAELNKTRSEL 353 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Confidence 3333444444444444444444444444443333 33333444444444555555666666666655444
No 80
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.77 E-value=1.3 Score=46.51 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=19.0
Q ss_pred HHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 001390 819 SQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEAC 869 (1088)
Q Consensus 819 lE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlq 869 (1088)
.+..+.++..++..+++......+.++...+.+..++..+..+..++..++
T Consensus 100 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 100 LQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333
No 81
>PRK01156 chromosome segregation protein; Provisional
Probab=94.60 E-value=20 Score=46.35 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=8.9
Q ss_pred hHHHHHHHhHHHHHHHHHH
Q 001390 329 FLTEQLRAMEEENNSLKEV 347 (1088)
Q Consensus 329 ~l~~rl~~~eeEnk~lke~ 347 (1088)
-+..++..++.+-+.|++-
T Consensus 473 ~~~~~i~~l~~~i~~l~~~ 491 (895)
T PRK01156 473 HYNEKKSRLEEKIREIEIE 491 (895)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444454555544444433
No 82
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.59 E-value=9.5 Score=43.95 Aligned_cols=186 Identities=21% Similarity=0.255 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhh------hH---------------hhhHHHHHhhcch
Q 001390 152 LMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRT------QA---------------EADSNALMVRLDS 210 (1088)
Q Consensus 152 ~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s------~~---------------eaei~~Lq~rLE~ 210 (1088)
-..|..+...+...|.........|.+-|..|+.++.-...... .. ...++.|+.++-.
T Consensus 92 N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~ 171 (306)
T PF04849_consen 92 NQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKS 171 (306)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHH
Confidence 33455555666666666666667788888888888766653322 11 1346899999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHH-HHHHHH---hHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhhH
Q 001390 211 TEKENASLKYEVRVLGKELEIR-NEEREF---NRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKN 286 (1088)
Q Consensus 211 ~EKEn~sLKyEl~vlqkELEIr-~eEre~---s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk~lpgpaa~a~mk~ 286 (1088)
+|-||..|+.|..-+..+-.-. ..|+.+ ..+.+..|+.|...+...+++.-.+|.|-+..|-.-+ +=++.+..
T Consensus 172 LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Ll---sqivdlQ~ 248 (306)
T PF04849_consen 172 LEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLL---SQIVDLQQ 248 (306)
T ss_pred HHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 9999999999998888663322 222222 3367788888888888888888888888876664432 11222222
Q ss_pred HHHhhcCCChhhhhccCCCCCCCcccccCCCCCCCCCcchhhhHHHHHHHhHHHHHHHHHHHhhhhhhhhHHHHHHHHhh
Q 001390 287 EVEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAA 366 (1088)
Q Consensus 287 eve~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eeEnk~lke~L~~k~~ELq~sr~~~a~t~ 366 (1088)
-+..++.+ ++-|.-+|.+.-+=. ..=.+||+--+-.|+...
T Consensus 249 r~k~~~~E--------------------------------nEeL~q~L~~ske~Q-------~~L~aEL~elqdkY~E~~ 289 (306)
T PF04849_consen 249 RCKQLAAE--------------------------------NEELQQHLQASKESQ-------RQLQAELQELQDKYAECM 289 (306)
T ss_pred HHHHHhhh--------------------------------HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 22222211 233444444432222 222566777788888888
Q ss_pred hhhhHHHHHHHHh
Q 001390 367 SKLSEVESQIEEL 379 (1088)
Q Consensus 367 skL~~~e~q~~~~ 379 (1088)
+=|-..+.+++.+
T Consensus 290 ~mL~EaQEElk~l 302 (306)
T PF04849_consen 290 AMLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHHHHHHh
Confidence 8777777777754
No 83
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=94.54 E-value=11 Score=43.25 Aligned_cols=68 Identities=28% Similarity=0.286 Sum_probs=45.5
Q ss_pred hhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001390 195 TQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRV 269 (1088)
Q Consensus 195 s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~ 269 (1088)
..|..+++.+...+-.+||++..++....-...-|--..+|+... .++.....+++.+||.=|+.|+.
T Consensus 240 ~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~-------~~~~~~~~~k~~kLe~LcRaLQ~ 307 (309)
T PF09728_consen 240 ETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKL-------EKELEKLKKKIEKLEKLCRALQA 307 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 356666666677777777777777777776666666666666554 33344556677788888887764
No 84
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.34 E-value=4.4 Score=46.79 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=21.4
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHhhccCchhhhcccccccc
Q 001390 925 EIATASEKLAECQETILNLGKQLKALASPREAALFDKVIHT 965 (1088)
Q Consensus 925 EIaaAAeKLAECQETI~~LGKQLKaLa~~~e~~~~d~~~~~ 965 (1088)
++..+...+++=+..+..+-.+|... .=.+++|-+|.+
T Consensus 247 ~l~~~~~~l~~~~~~l~~~~~~l~~~---~i~AP~dG~V~~ 284 (423)
T TIGR01843 247 ELTEAQARLAELRERLNKARDRLQRL---IIRSPVDGTVQS 284 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc---EEECCCCcEEEE
Confidence 45556666666666666666666532 113566666654
No 85
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.34 E-value=1.5 Score=50.30 Aligned_cols=11 Identities=27% Similarity=0.425 Sum_probs=5.0
Q ss_pred HHHHHHHHhhc
Q 001390 940 ILNLGKQLKAL 950 (1088)
Q Consensus 940 I~~LGKQLKaL 950 (1088)
|-.|-..+..|
T Consensus 278 v~~Lk~~~~~L 288 (325)
T PF08317_consen 278 VKRLKAKVDAL 288 (325)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 86
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.23 E-value=19 Score=44.48 Aligned_cols=168 Identities=18% Similarity=0.216 Sum_probs=91.1
Q ss_pred HhhcchHHHHHHHhhHHHHHH---HHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 001390 205 MVRLDSTEKENASLKYEVRVL---GKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAAL 281 (1088)
Q Consensus 205 q~rLE~~EKEn~sLKyEl~vl---qkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk~lpgpaa~ 281 (1088)
..+++.+.+++.+||+.|..+ -++.+.-+-||+--.|-++....+.-...+++-.++-++++--.-+.+++- -+
T Consensus 307 EeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~---~~ 383 (581)
T KOG0995|consen 307 EEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFI---DL 383 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HH
Confidence 334445555555555554443 233555666666666666666666666666666666666655544444441 11
Q ss_pred hhhhHHHHhh-cCCChhhhhccCCCCCCCcccccCCCCCCCCCcch-hhhHHHHHHHhHHHHHHHHHHHhhhhhhhhHHH
Q 001390 282 AKMKNEVEIL-GRESPETRRKRLNSSPLGSMVDSAFDNPPDTPSKR-INFLTEQLRAMEEENNSLKEVLDKKTNELQFSR 359 (1088)
Q Consensus 282 a~mk~eve~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~rl~~~eeEnk~lke~L~~k~~ELq~sr 359 (1088)
.+....+... ..++.+ -.+.+-.+. +.....-+....+.+. .+...+++..-+.++-+|-+.+..+++-+-..+
T Consensus 384 ~~l~~~i~l~~~~~~~n--~~~~pe~~~--~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~ 459 (581)
T KOG0995|consen 384 NSLIRRIKLGIAENSKN--LERNPERAA--TNGVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKI 459 (581)
T ss_pred HHHHHHHHHHHHHHhcc--CCcCCccCc--cccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222211 111111 011111111 1111111111122222 246778888888899999999999998888888
Q ss_pred HHHHHhhhhhhHHHHHHHHh
Q 001390 360 TMYARAASKLSEVESQIEEL 379 (1088)
Q Consensus 360 ~~~a~t~skL~~~e~q~~~~ 379 (1088)
.....+-++|+.+++.....
T Consensus 460 ~~l~~~~~el~~~~~~~~~~ 479 (581)
T KOG0995|consen 460 QILGEIELELKKAESKYELK 479 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887777653
No 87
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.21 E-value=13 Score=42.76 Aligned_cols=98 Identities=23% Similarity=0.296 Sum_probs=63.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhcCCCCcccchhhhhhhhh
Q 001390 843 QVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTKSGIPTDELKQDEKQIQT 922 (1088)
Q Consensus 843 QLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~~~~~~~~~~~e~~~~kq 922 (1088)
||...+.++..+...|....-+...+++.|.+|-.++-+..+.+..+...-.+|...|...+. .+-+-
T Consensus 207 QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske------------~Q~~L 274 (306)
T PF04849_consen 207 QLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKE------------SQRQL 274 (306)
T ss_pred HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH------------HHHHH
Confidence 344444444555555555566666667767777777666666666666666666666664332 22222
Q ss_pred hHhHHHHHhhHHHHHHHHHHHHHHHhhccC
Q 001390 923 DWEIATASEKLAECQETILNLGKQLKALAS 952 (1088)
Q Consensus 923 e~EIaaAAeKLAECQETI~~LGKQLKaLa~ 952 (1088)
--|+.---+|.|||+....----+||.|+.
T Consensus 275 ~aEL~elqdkY~E~~~mL~EaQEElk~lR~ 304 (306)
T PF04849_consen 275 QAELQELQDKYAECMAMLHEAQEELKTLRK 304 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 236777789999999998888888888865
No 88
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.20 E-value=4 Score=50.81 Aligned_cols=164 Identities=15% Similarity=0.126 Sum_probs=81.7
Q ss_pred chhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHH----------HHHHHHHHHHhhhH
Q 001390 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVI----------EDQVKLQKMINEDL 854 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~sel----------EeQLk~~~e~le~L 854 (1088)
..+++.|+..+..+...+..+...++.....+..+..++.+.+.+...+++.+... ++.+..+....+.-
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s 406 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEAS 406 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 55566666666666666666666666666555555555555555444444333322 22222222222111
Q ss_pred HHHHHHHH-------------------------HHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhcCCCC
Q 001390 855 DTQLKVAR-------------------------VDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTKSGIP 909 (1088)
Q Consensus 855 esqL~ele-------------------------aEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~~~~~ 909 (1088)
..++..+. .+..+...++..++.++......+..-...+.+|..+++++.+....
T Consensus 407 ~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~R 486 (594)
T PF05667_consen 407 EQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNR 486 (594)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 11111111 11222223333333333333333333344444555556655554321
Q ss_pred cccch----hhhhhhhhhHhHHHHHhhHHHHHHHHHHHHHHHh
Q 001390 910 TDELK----QDEKQIQTDWEIATASEKLAECQETILNLGKQLK 948 (1088)
Q Consensus 910 ~~~~~----~e~~~~kqe~EIaaAAeKLAECQETI~~LGKQLK 948 (1088)
..... -....-||.-||.---.=-.+=|+.|-+|+-+|.
T Consensus 487 s~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~ 529 (594)
T PF05667_consen 487 SAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLD 529 (594)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11110 0122367888999888888899999999999985
No 89
>PRK11281 hypothetical protein; Provisional
Probab=94.20 E-value=1.8 Score=57.22 Aligned_cols=59 Identities=22% Similarity=0.214 Sum_probs=42.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001390 215 NASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRK 273 (1088)
Q Consensus 215 n~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk 273 (1088)
...|+.|...+..+.+.+..+..-+....+-...|+-...+++..+|.+.+.|+..+-.
T Consensus 194 ~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 194 RVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666778888888888889999999998865533
No 90
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.16 E-value=3 Score=41.98 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=7.5
Q ss_pred HHHhhHHHHHHHHHHHHHHH
Q 001390 928 TASEKLAECQETILNLGKQL 947 (1088)
Q Consensus 928 aAAeKLAECQETI~~LGKQL 947 (1088)
-+=.++.+=.+-=..|-.||
T Consensus 109 ~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 109 ELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333443
No 91
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.15 E-value=1.7 Score=45.64 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=7.0
Q ss_pred HHHHHHHHHhhHHHHHHHh
Q 001390 864 DLNEACQKLSSLEVELEDK 882 (1088)
Q Consensus 864 El~qlqeKVsSLE~ELE~e 882 (1088)
+..+.+..+..++.++...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~ 170 (191)
T PF04156_consen 152 ELQDSREEVQELRSQLERL 170 (191)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 92
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.01 E-value=13 Score=41.87 Aligned_cols=43 Identities=26% Similarity=0.316 Sum_probs=31.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHH
Q 001390 81 ITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECM 123 (1088)
Q Consensus 81 v~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecm 123 (1088)
..=-..++.++..+++.+++.+...+.++.++..|..-|.-+.
T Consensus 95 ~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 95 LAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 3344567788888888888888888888888888777655443
No 93
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.94 E-value=6.7 Score=45.12 Aligned_cols=69 Identities=19% Similarity=0.163 Sum_probs=40.5
Q ss_pred HHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001390 99 DAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVE 172 (1088)
Q Consensus 99 e~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aE 172 (1088)
.-.+-+..=++=|.++++|-...+.+.+..++.+... +.+.........+.+..+.+.+..++..+++.
T Consensus 131 aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~-----L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~ 199 (325)
T PF08317_consen 131 ARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAK-----LDKQLEQLDELLPKLRERKAELEEELENLKQL 199 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556667777777777777766555444332 33444555666666666666666665555443
No 94
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=93.80 E-value=4.9 Score=50.93 Aligned_cols=167 Identities=20% Similarity=0.196 Sum_probs=100.4
Q ss_pred CCchhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHH-----H------------
Q 001390 783 EPGSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQV-----K------------ 845 (1088)
Q Consensus 783 ~~~eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQL-----k------------ 845 (1088)
.++..+.+++.+|..|-..|+..+.+++..+..+.+-..++..|..++..+.......+.+- +
T Consensus 269 KL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~~~ye 348 (717)
T PF09730_consen 269 KLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHEDGDYYE 348 (717)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccccchhh
Confidence 34788888999999999999999999999999999999999999999998887322221110 0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHH----HHHHHHHHHHHHHhhhcCCCCc---ccchhhhh
Q 001390 846 LQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEE----LEATCLELQLQLESVTKSGIPT---DELKQDEK 918 (1088)
Q Consensus 846 ~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEE----l~aKc~eLeeQLEr~e~~~~~~---~~~~~e~~ 918 (1088)
--...++.++.+|.....++..+...+..|+.++......+.+ +...++.|..++.+.++..... ...-+.+.
T Consensus 349 ~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~EL 428 (717)
T PF09730_consen 349 VDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKEL 428 (717)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 0001123344555555555555555555555544444333332 2344456666665554411000 00000000
Q ss_pred h------hhhhHhHHHHHhhHHHHHHHHHHHHHHHhh
Q 001390 919 Q------IQTDWEIATASEKLAECQETILNLGKQLKA 949 (1088)
Q Consensus 919 ~------~kqe~EIaaAAeKLAECQETI~~LGKQLKa 949 (1088)
+ -...-.|.+|-+=|..|-+.|++|..++=.
T Consensus 429 r~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~ 465 (717)
T PF09730_consen 429 RALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCM 465 (717)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 112234778888888899999999988843
No 95
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=93.65 E-value=0.94 Score=51.93 Aligned_cols=91 Identities=18% Similarity=0.189 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHH
Q 001390 816 LQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLE 895 (1088)
Q Consensus 816 LeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~e 895 (1088)
+..++.++..|+.+...+.+.+..++.+-......+..++.++..+..+-.+.....+.+..++.......+.+.+++..
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~ 124 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEY 124 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444555555555555555566666667777777777777788888888
Q ss_pred HHHHHHhhhcC
Q 001390 896 LQLQLESVTKS 906 (1088)
Q Consensus 896 LeeQLEr~e~~ 906 (1088)
...+|+++.+.
T Consensus 125 ~~~~L~~L~kt 135 (314)
T PF04111_consen 125 ASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHCHHT-
T ss_pred HHHHHHHHHhc
Confidence 99999987764
No 96
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=93.63 E-value=5.9 Score=42.87 Aligned_cols=166 Identities=17% Similarity=0.231 Sum_probs=103.2
Q ss_pred hhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001390 787 EFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLN 866 (1088)
Q Consensus 787 eLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~ 866 (1088)
+...+.-.+..++..+.+.++++.+...++.++++.-.+-.-....+.......++.++.+..++....--....-....
T Consensus 5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~e 84 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYE 84 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777788888888888888888888888776554444444444433444444444333333333333333344555
Q ss_pred HHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhcCCCCcccchhhhhh----hhhhHhHHHHHhhHHHHHHHHHH
Q 001390 867 EACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTKSGIPTDELKQDEKQ----IQTDWEIATASEKLAECQETILN 942 (1088)
Q Consensus 867 qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~~~~~~~~~~~e~~~----~kqe~EIaaAAeKLAECQETI~~ 942 (1088)
...-|+.-++.+|+......+-...+|.+|.+++.-+...- .+....+++- -.-+.+|-..++||-|----=-.
T Consensus 85 EVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nl--k~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~ 162 (205)
T KOG1003|consen 85 EVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNL--KSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEF 162 (205)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH--HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 67777788888888888888888888888888887654311 1111111111 12344677788898887776777
Q ss_pred HHHHHhhccCch
Q 001390 943 LGKQLKALASPR 954 (1088)
Q Consensus 943 LGKQLKaLa~~~ 954 (1088)
.++..++|--+.
T Consensus 163 aERsVakLeke~ 174 (205)
T KOG1003|consen 163 AERRVAKLEKER 174 (205)
T ss_pred HHHHHHHHcccH
Confidence 778888886554
No 97
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.55 E-value=24 Score=44.50 Aligned_cols=131 Identities=21% Similarity=0.276 Sum_probs=74.3
Q ss_pred hhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHH-------HHHhHHHHHHHHHHHHHHHHHHHHH
Q 001390 198 EADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADE-------SHKQHLESVKKIAKLESECQRLRVL 270 (1088)
Q Consensus 198 eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEa-------A~KQhlEsvKKIakLEaECqRLr~l 270 (1088)
...+.+.-.++..++.+|..|+ ..++.+--.-+|+....-. +.+-...-..++..|.|||++||..
T Consensus 502 ~e~i~~~~ke~~~Le~En~rLr-------~~~e~~~l~gd~~~~~~rVl~~~~npt~~~~~~~k~~~e~LqaE~~~lk~~ 574 (716)
T KOG4593|consen 502 REKIEQYLKELELLEEENDRLR-------AQLERRLLQGDYEENITRVLHMSTNPTSKARQIKKNRLEELQAELERLKER 574 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhhhhccceeeecCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666666777776666 4444444444554332211 1233344556778899999999998
Q ss_pred HHhcCCChHHHhhhhHHHHhhcCCChhhhhccCCCCCCCcccccCCCCCCCCCcchhhhHHHHHHHhHHHHHHHHHHHhh
Q 001390 271 VRKRLPGPAALAKMKNEVEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLKEVLDK 350 (1088)
Q Consensus 271 ~rk~lpgpaa~a~mk~eve~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eeEnk~lke~L~~ 350 (1088)
+++.= .+.+ .... +.-+++..+.. .+.+.-|-.++-.+|--|..||+..+.
T Consensus 575 l~~le-----------------~~~~-------~~~d----~~i~~~s~~~~-~~ev~qlk~ev~s~ekr~~rlk~vF~~ 625 (716)
T KOG4593|consen 575 LTALE-----------------GDKM-------QFRD----GEIAVHSLLAF-SKEVAQLKKEVESAEKRNQRLKEVFAS 625 (716)
T ss_pred HHHHh-----------------ccCC-------cccc----hhhHHhhhhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87621 1110 0000 11122223332 455556778888888889999999987
Q ss_pred hhhhhhHHHHHHHHhh
Q 001390 351 KTNELQFSRTMYARAA 366 (1088)
Q Consensus 351 k~~ELq~sr~~~a~t~ 366 (1088)
|-.| |-+..|.-..
T Consensus 626 ki~e--Fr~ac~sL~G 639 (716)
T KOG4593|consen 626 KIQE--FRDACYSLLG 639 (716)
T ss_pred HHHH--HHHHHHhhhh
Confidence 7654 4444454444
No 98
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=93.53 E-value=19 Score=44.12 Aligned_cols=53 Identities=26% Similarity=0.272 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHHh-hhh-hHh-----hhHHHHHhhcchHHHHHHHhhHHHHHHHHH
Q 001390 176 LTKALLAKEKLIEDLGK-QRT-QAE-----ADSNALMVRLDSTEKENASLKYEVRVLGKE 228 (1088)
Q Consensus 176 Ls~~l~~~~~ii~eLke-e~s-~~e-----aei~~Lq~rLE~~EKEn~sLKyEl~vlqkE 228 (1088)
-.++|+.|+++|..||+ ... .+. .+++.++.+.+.+.-++..|+..|+.+..|
T Consensus 244 A~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e 303 (511)
T PF09787_consen 244 AQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAE 303 (511)
T ss_pred HHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999 322 222 235556666666666666655555433333
No 99
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=93.35 E-value=0.72 Score=47.94 Aligned_cols=65 Identities=18% Similarity=0.218 Sum_probs=39.0
Q ss_pred chhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHH--HHHHhhHHHHHHHHHhHHHHHHHHHHHHH
Q 001390 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQ--KIVSNSQNELDILKKSKEVIEDQVKLQKM 849 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE--~kLeELksELesLeES~selEeQLk~~~e 849 (1088)
.+++..|..++..++.++.........+..++..+. +..++|..++..++.++..++..|..+..
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666666666666666666666665555 33455555666666665555555555443
No 100
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.23 E-value=2.6 Score=53.22 Aligned_cols=157 Identities=17% Similarity=0.145 Sum_probs=84.7
Q ss_pred hHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHH----------HHHHHhhhHHHHHHH
Q 001390 791 VEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVK----------LQKMINEDLDTQLKV 860 (1088)
Q Consensus 791 LesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk----------~~~e~le~LesqL~e 860 (1088)
++..+..+...++.+.....+++.+.++++.++..+.+++..+++.+..++.||. ...+.....+..++.
T Consensus 662 yK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a 741 (970)
T KOG0946|consen 662 YKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNA 741 (970)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHH
Confidence 5555666666666666666666666666666666666666666666666666666 334444445556666
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhcCCCCcccchhhhhhhhh-hHhHHHHHhhHHHHHHH
Q 001390 861 ARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTKSGIPTDELKQDEKQIQT-DWEIATASEKLAECQET 939 (1088)
Q Consensus 861 leaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~~~~~~~~~~~e~~~~kq-e~EIaaAAeKLAECQET 939 (1088)
+..+.+.+.++..-+..++.+.....+...+..+.-+.... ...+......+.-. -.+++.-...|++=|.-
T Consensus 742 ~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~-------~~~~~~~~qeqv~El~~~l~e~~~~l~~~q~e 814 (970)
T KOG0946|consen 742 ALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQG-------SLNDNLGDQEQVIELLKNLSEESTRLQELQSE 814 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccc-------hhhhhhhhHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 66666666666666666666655555544444433222111 11111111111111 11244445556666666
Q ss_pred HHHHHHHHhhccCch
Q 001390 940 ILNLGKQLKALASPR 954 (1088)
Q Consensus 940 I~~LGKQLKaLa~~~ 954 (1088)
+..|-.|-++|-.+.
T Consensus 815 ~~~~keq~~t~~~~t 829 (970)
T KOG0946|consen 815 LTQLKEQIQTLLERT 829 (970)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666665444
No 101
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.09 E-value=6.2 Score=45.67 Aligned_cols=149 Identities=17% Similarity=0.146 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001390 89 AEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVR-----EEQEQRIHDAVMKASMEFEQSLMILEEKLAETS 163 (1088)
Q Consensus 89 aE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~r-----EEqEqki~da~~kks~E~Ek~~~eLE~kL~El~ 163 (1088)
.|+..+..+.+.|-.-.-.+++|-.+|....++++.+.-..- -..++. .+.....+.......|...+.++.
T Consensus 16 ~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~---~La~lL~~sre~Nk~L~~Ev~~Lr 92 (319)
T PF09789_consen 16 QELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENK---NLAQLLSESREQNKKLKEEVEELR 92 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666677777777776666664321100 001111 122223333333446777777777
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHh
Q 001390 164 KRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRT 242 (1088)
Q Consensus 164 k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ks 242 (1088)
++|..+..++..|...+....-....+ ....+-.+-+.+-..||.+.+++..|.++++.+--|.+-+..||++=+.-
T Consensus 93 qkl~E~qGD~KlLR~~la~~r~~~~~~--~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K 169 (319)
T PF09789_consen 93 QKLNEAQGDIKLLREKLARQRVGDEGI--GARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCK 169 (319)
T ss_pred HHHHHHhchHHHHHHHHHhhhhhhccc--cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777766664443221111111 12233367778889999999999999999999999999999999876554
No 102
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.79 E-value=4 Score=47.02 Aligned_cols=78 Identities=38% Similarity=0.456 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhcCCCCcccchhhhhhhhhhHhHHHHHhhHHHHH----HH
Q 001390 864 DLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTKSGIPTDELKQDEKQIQTDWEIATASEKLAECQ----ET 939 (1088)
Q Consensus 864 El~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~~~~~~~~~~~e~~~~kqe~EIaaAAeKLAECQ----ET 939 (1088)
++..+.+++..+..++...++.++++..+...+...|+.... ++.....+|+.|-..+-+|+ .-
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~------------~k~e~~~~I~~ae~~~~~~r~~t~~E 272 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTN------------KKSELNTEIAEAEKKLEQCRGFTFKE 272 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 444444555555555555555555555555555555554332 33444446666666666665 23
Q ss_pred HHHHHHHHhhccCc
Q 001390 940 ILNLGKQLKALASP 953 (1088)
Q Consensus 940 I~~LGKQLKaLa~~ 953 (1088)
|..|..++..|...
T Consensus 273 i~~Lk~~~~~Le~l 286 (312)
T smart00787 273 IEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 66677666666544
No 103
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.76 E-value=7.6 Score=44.85 Aligned_cols=57 Identities=12% Similarity=0.248 Sum_probs=33.6
Q ss_pred hHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHH
Q 001390 791 VEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQ 847 (1088)
Q Consensus 791 LesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~ 847 (1088)
+..+...+..+++.++.++..+..++..++.++..++.++..++..+..++.++...
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~ 184 (423)
T TIGR01843 128 IKGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEAR 184 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555566666666666666666666666666666666666666555544
No 104
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=92.76 E-value=36 Score=43.24 Aligned_cols=100 Identities=19% Similarity=0.151 Sum_probs=60.0
Q ss_pred HhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001390 191 GKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVL 270 (1088)
Q Consensus 191 kee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l 270 (1088)
.........++..++..++...+....+...++-++.+++--....+-......++.--..-...+-.++|+||.+|+..
T Consensus 537 t~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~k 616 (698)
T KOG0978|consen 537 TSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRK 616 (698)
T ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555566666666666666666666666666665555555555554444444445556668899999999966
Q ss_pred HHh---cCCChHHHhhhhHHHHh
Q 001390 271 VRK---RLPGPAALAKMKNEVEI 290 (1088)
Q Consensus 271 ~rk---~lpgpaa~a~mk~eve~ 290 (1088)
+.. .--|+.|...|..|+..
T Consensus 617 le~~k~~~~~~s~d~~L~EElk~ 639 (698)
T KOG0978|consen 617 LERLKKEESGASADEVLAEELKE 639 (698)
T ss_pred HHHhccccccccccHHHHHHHHH
Confidence 543 33344455556666654
No 105
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=92.67 E-value=46 Score=44.21 Aligned_cols=80 Identities=15% Similarity=0.265 Sum_probs=38.5
Q ss_pred HhHhhhHHHHHHHHhhcccchhHHHHhH-------HHHHHHhhhhHHHHH---HHHHHHHHHHHHHhhhhhHHHhhhhhH
Q 001390 47 NDVKNLNDKLFSALAECNAKDDLVKKHA-------KMAQEAITGREKAEA---EVVSLKQELDAALQQRDTGEERLIHLD 116 (1088)
Q Consensus 47 ~~~k~l~ekLs~a~~~~~~kd~lvkqh~-------kvaeeav~GweKaEa---E~~slKkqLe~~~qq~v~lEErvkhLd 116 (1088)
++|..|.+++...++-++.=|.++.+-. ..-++|+..-++|+. -+...+..|+++.+--...++-+...+
T Consensus 1511 eqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~ 1590 (1758)
T KOG0994|consen 1511 EQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGAD 1590 (1758)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3567777777777777776666554321 122344443333333 233344444444444444444444444
Q ss_pred HHHHHHHHHh
Q 001390 117 AALKECMDQL 126 (1088)
Q Consensus 117 ~aLKecmkQL 126 (1088)
..+.-..+-|
T Consensus 1591 ~~~~~a~~~l 1600 (1758)
T KOG0994|consen 1591 RDIRLAQQLL 1600 (1758)
T ss_pred HHHHHHHHHH
Confidence 4333333333
No 106
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.61 E-value=6.4 Score=48.61 Aligned_cols=63 Identities=14% Similarity=0.082 Sum_probs=30.5
Q ss_pred hhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHH
Q 001390 788 FINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMI 850 (1088)
Q Consensus 788 LEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~ 850 (1088)
++..+.....+..+|..+-+.++.-..-...++.....+...+..+++.+..+..++......
T Consensus 277 l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 277 LDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444444445555544444444444444444444444444444444444444444444444
No 107
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=92.56 E-value=15 Score=39.71 Aligned_cols=121 Identities=17% Similarity=0.165 Sum_probs=70.3
Q ss_pred chhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHh---hHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 001390 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSN---SQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVA 861 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeE---LksELesLeES~selEeQLk~~~e~le~LesqL~el 861 (1088)
.++-.+++..+..++.-=......++.++.+++-+++.+.. +..+++.++.....++++...+-.+.+.++.+-..+
T Consensus 21 ~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L 100 (193)
T PF14662_consen 21 ADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSL 100 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444433332 355555555556666666555555556666666666
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhc
Q 001390 862 RVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTK 905 (1088)
Q Consensus 862 eaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~ 905 (1088)
.+++..+++.-..|..+.+.......++...-..|+-|+=.++.
T Consensus 101 ~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~ 144 (193)
T PF14662_consen 101 VAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFES 144 (193)
T ss_pred HHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 67777777777777777777777777777777777777744553
No 108
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.48 E-value=18 Score=47.07 Aligned_cols=174 Identities=14% Similarity=0.189 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHH
Q 001390 86 KAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKAS---MEFEQSLMILEEKLAET 162 (1088)
Q Consensus 86 KaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks---~E~Ek~~~eLE~kL~El 162 (1088)
..-.|+..+......+++..-.-.+.+.+|....-++++-+..+||.+..+..=-+..+. -+|++-..++.+-...
T Consensus 178 ~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~- 256 (1072)
T KOG0979|consen 178 QYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQA- 256 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHH-
Confidence 333456666666666677777778888888888888888888888877654433333222 3344444444332222
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHh
Q 001390 163 SKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRT 242 (1088)
Q Consensus 163 ~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ks 242 (1088)
-.+++.+-..|.+....=...+.+|..++....+++..++..|...-.....+--.+....++++-.....+.-++.
T Consensus 257 ---~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~ 333 (1072)
T KOG0979|consen 257 ---KDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKA 333 (1072)
T ss_pred ---HHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333332223333333334555555555555555555544444444444444334444444444444444444444
Q ss_pred HHHHHHhHHHHHHHHHHHHHH
Q 001390 243 ADESHKQHLESVKKIAKLESE 263 (1088)
Q Consensus 243 aEaA~KQhlEsvKKIakLEaE 263 (1088)
++-..+.....+|-|..+++|
T Consensus 334 ~~~rq~~i~~~~k~i~~~q~e 354 (1072)
T KOG0979|consen 334 AEKRQKRIEKAKKMILDAQAE 354 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 443333333444444433333
No 109
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=92.45 E-value=22 Score=40.03 Aligned_cols=215 Identities=19% Similarity=0.233 Sum_probs=146.8
Q ss_pred cccchhHHHHhH-HHHHHHhhh------------hHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhh
Q 001390 63 CNAKDDLVKKHA-KMAQEAITG------------REKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFV 129 (1088)
Q Consensus 63 ~~~kd~lvkqh~-kvaeeav~G------------weKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~ 129 (1088)
..+++.|.++.. +--|-+|.. -+....+-..||+|+.++.++-..+=-|++.-+.-.-+|.-|++-+
T Consensus 76 ~~a~~elq~~ks~~Q~e~~v~a~e~~~~rll~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~l 155 (330)
T KOG2991|consen 76 VMARDELQLRKSWKQYEAYVQALEGKYTRLLSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYL 155 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677766643 222333322 2345556778899999999988888888988889999999988776
Q ss_pred hHHHH-------HHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHhhhh-hhhhhHHHHHHHHHHHHHHhhhhh--
Q 001390 130 REEQE-------QRIHDAVMKASMEFEQSLMILE---EKLAETSKRLAKLGVE-NTHLTKALLAKEKLIEDLGKQRTQ-- 196 (1088)
Q Consensus 130 rEEqE-------qki~da~~kks~E~Ek~~~eLE---~kL~El~k~L~k~~aE-n~~Ls~~l~~~~~ii~eLkee~s~-- 196 (1088)
+-.+- .-+.|- ..-..|..++.+|| .||.+++.+|..-.=- -+.-.+.|-+|=+++..=.+++.+
T Consensus 156 K~qq~Ps~~qlR~~llDP--Ainl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~ 233 (330)
T KOG2991|consen 156 KQQQQPSVAQLRSTLLDP--AINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQA 233 (330)
T ss_pred HHhhCcHHHHHHHHhhCh--HHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhh
Confidence 65443 111221 22356777777776 4566666665432100 011245666676777666666664
Q ss_pred HhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001390 197 AEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLP 276 (1088)
Q Consensus 197 ~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk~lp 276 (1088)
.+-.|..|..+|+--.+.+..||.....+..=++-|.+..+-..-.+-....++.+-.+.|..|+.+...+...|--+--
T Consensus 234 s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d~~~ 313 (330)
T KOG2991|consen 234 SEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGDKKD 313 (330)
T ss_pred hcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 45567788888888888888888888888888888898888888888888888888888888888888888777654443
Q ss_pred ChH
Q 001390 277 GPA 279 (1088)
Q Consensus 277 gpa 279 (1088)
.|+
T Consensus 314 ~~~ 316 (330)
T KOG2991|consen 314 EVD 316 (330)
T ss_pred ccc
Confidence 333
No 110
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.41 E-value=5.3 Score=46.04 Aligned_cols=116 Identities=18% Similarity=0.203 Sum_probs=56.9
Q ss_pred HHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHH----HHHHhhhhhHHHHHHHHHH
Q 001390 821 KIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEV----ELEDKSNCCEELEATCLEL 896 (1088)
Q Consensus 821 ~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~----ELE~er~~lEEl~aKc~eL 896 (1088)
.....|...+..++.....+..++......+..+...+..++.++.++++-..-++. ++...+..+.+....+...
T Consensus 144 gLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~ 223 (312)
T smart00787 144 GLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIK 223 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555555555555555555555555555554444322 3333333333333333333
Q ss_pred HHHHHhhhcCCCCcccchhhhhhhhhhHhHHHHHhhHHHHHHHHHHHHHHHh
Q 001390 897 QLQLESVTKSGIPTDELKQDEKQIQTDWEIATASEKLAECQETILNLGKQLK 948 (1088)
Q Consensus 897 eeQLEr~e~~~~~~~~~~~e~~~~kqe~EIaaAAeKLAECQETI~~LGKQLK 948 (1088)
..+++.... ....-+..|.+..++.+||++.|..+-+++.
T Consensus 224 ~~~l~e~~~------------~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~ 263 (312)
T smart00787 224 VKKLEELEE------------ELQELESKIEDLTNKKSELNTEIAEAEKKLE 263 (312)
T ss_pred HHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332221 1112233566777777777777777777664
No 111
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=92.34 E-value=6.7 Score=44.33 Aligned_cols=80 Identities=24% Similarity=0.242 Sum_probs=61.7
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhH
Q 001390 161 ETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNR 240 (1088)
Q Consensus 161 El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ 240 (1088)
+-..+...+..||..|. ..+..|-..+..+..++......+..+|.++.+.|+.|.-++.|+..+..|.+-++
T Consensus 57 ~ek~e~s~LkREnq~l~-------e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 57 EEKNEYSALKRENQSLM-------ESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred HHhhhhhhhhhhhhhHH-------HHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334555566665555 66677777777788888888888899999999999999999999999999999888
Q ss_pred HhHHHHH
Q 001390 241 RTADESH 247 (1088)
Q Consensus 241 ksaEaA~ 247 (1088)
+++-.+.
T Consensus 130 ~~~~~~~ 136 (307)
T PF10481_consen 130 QAASSGD 136 (307)
T ss_pred HhhccCC
Confidence 8876443
No 112
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=92.16 E-value=21 Score=39.19 Aligned_cols=181 Identities=19% Similarity=0.195 Sum_probs=83.2
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHH---HHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHH
Q 001390 76 MAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAA---LKECMDQLHFVREEQEQRIHDAVMKASMEFEQSL 152 (1088)
Q Consensus 76 vaeeav~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~a---LKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~ 152 (1088)
-|-.-+.+=++.......+.+.++.+......+...+..+... ....-..+ --++=++++..+... ..+|....
T Consensus 25 ~al~~L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~--s~~eLeq~l~~~~~~-L~~~q~~l 101 (240)
T PF12795_consen 25 QALSFLDEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANL--SLEELEQRLSQEQAQ-LQELQEQL 101 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccC--CHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3333344445556667777777777777777777776666544 11111100 011122333333333 56666666
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHH
Q 001390 153 MILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIR 232 (1088)
Q Consensus 153 ~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr 232 (1088)
..+..++..++....+.....+... .....|-..|..-...-+..+ -.++.-.++-+...|+.++.+++.++.-.
T Consensus 102 ~~~~~~l~~~~~~p~~aq~~l~~~~---~~l~ei~~~L~~~~~~~~~~l--~~a~~~~l~ae~~~l~~~~~~le~el~s~ 176 (240)
T PF12795_consen 102 QQENSQLIEIQTRPERAQQQLSEAR---QRLQEIRNQLQNLPPNGESPL--SEAQRWLLQAELAALEAQIEMLEQELLSN 176 (240)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHH---HHHHHHHHHHhccCCCCcchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 6666666666666666665522222 221222222222100000111 12333334444444444444444444433
Q ss_pred HHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001390 233 NEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLV 271 (1088)
Q Consensus 233 ~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~ 271 (1088)
+.-.++ +..+.-...+++..++.+.+-|+..+
T Consensus 177 ~~rq~L-------~~~qrdl~~~~~~~l~~~l~~Lq~~l 208 (240)
T PF12795_consen 177 NNRQEL-------LQLQRDLLKARIQRLQQQLQALQNLL 208 (240)
T ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333 34444444555566666666666443
No 113
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=91.98 E-value=37 Score=41.59 Aligned_cols=171 Identities=19% Similarity=0.174 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhh---hHHHh--------hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHH
Q 001390 84 REKAEAEVVSLKQELDAALQQRD---TGEER--------LIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSL 152 (1088)
Q Consensus 84 weKaEaE~~slKkqLe~~~qq~v---~lEEr--------vkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~ 152 (1088)
.-.++.|+..++.+++++.+.+. ..+.. +..|..+|......+..-.+.-.... -...+.+.+++...
T Consensus 118 l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~-~~fl~rtl~~e~~~ 196 (511)
T PF09787_consen 118 LQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAV-VEFLKRTLKKEIER 196 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHH-HHHHHHHHHHHHHH
Confidence 34566777777777777721111 11111 13333333333333322222222222 22334466666666
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHH----hhcchHHHHHHHhhHH-HH----
Q 001390 153 MILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALM----VRLDSTEKENASLKYE-VR---- 223 (1088)
Q Consensus 153 ~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq----~rLE~~EKEn~sLKyE-l~---- 223 (1088)
..|+.++. +...+.....+...+. ..+.-++-.....++++.+.+ .-|..-|+-+.+||.. ..
T Consensus 197 ~~L~~~~~-A~~~~~~~l~~~~e~~-------~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~ 268 (511)
T PF09787_consen 197 QELEERPK-ALRHYIEYLRESGELQ-------EQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFD 268 (511)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccc
Confidence 66666666 3233333222222222 344444555555666666665 4578888888888882 11
Q ss_pred --HHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHH
Q 001390 224 --VLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESE 263 (1088)
Q Consensus 224 --vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaE 263 (1088)
...-|++.+..|+++.+-.+.....|+...+-.+..+|.+
T Consensus 269 ~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~ 310 (511)
T PF09787_consen 269 SSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQ 310 (511)
T ss_pred cccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112466666666666555555555554444444444333
No 114
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.86 E-value=40 Score=41.64 Aligned_cols=200 Identities=25% Similarity=0.269 Sum_probs=117.7
Q ss_pred chhHhhHhHhhhHHHHHHHHhhcccchhHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHH
Q 001390 41 DKAELENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALK 120 (1088)
Q Consensus 41 ~~~~~~~~~k~l~ekLs~a~~~~~~kd~lvkqh~kvaeeav~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLK 120 (1088)
..+.+.-.|..|+++|.-+-.++ ++-|-.|.+-.+. -..|++++++.+-.--.++-.+..+..||-
T Consensus 9 ~ve~lr~eierLT~el~q~t~e~-------------~qaAeyGL~lLee-K~~Lkqq~eEleaeyd~~R~Eldqtkeal~ 74 (772)
T KOG0999|consen 9 EVEKLRQEIERLTEELEQTTEEK-------------IQAAEYGLELLEE-KEDLKQQLEELEAEYDLARTELDQTKEALG 74 (772)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34668888999999998876554 3455667766553 456888888888777777777777777777
Q ss_pred HHHHHhhhhh---HHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH-----------HHHH
Q 001390 121 ECMDQLHFVR---EEQEQ-RIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALL-----------AKEK 185 (1088)
Q Consensus 121 ecmkQLr~~r---EEqEq-ki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~-----------~~~~ 185 (1088)
+..-+-+.+- +++|. .+++.+.+ -..|-.-..+||+.|-.+.+.|...+.||..|.+--+ .|-+
T Consensus 75 q~~s~hkk~~~~g~e~EesLLqESaak-E~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~r 153 (772)
T KOG0999|consen 75 QYRSQHKKVARDGEEREESLLQESAAK-EEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRR 153 (772)
T ss_pred HHHHHHHHhhccchhhHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHH
Confidence 6665443332 23443 44444444 4666666778888888888888888888765552221 2333
Q ss_pred HHHHHHhhhh---hHhhhHHHHHhhcchHH----------HHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHH
Q 001390 186 LIEDLGKQRT---QAEADSNALMVRLDSTE----------KENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLE 252 (1088)
Q Consensus 186 ii~eLkee~s---~~eaei~~Lq~rLE~~E----------KEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlE 252 (1088)
+..+|++-+. +.=.+..+|..+==+++ -|.-.||.++.-++.+.++++...+-..+=-+-|.+|..|
T Consensus 154 lr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEE 233 (772)
T KOG0999|consen 154 LRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEE 233 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443332 11112222211111222 2333445566666666666666666555555556666665
Q ss_pred HHH
Q 001390 253 SVK 255 (1088)
Q Consensus 253 svK 255 (1088)
.-.
T Consensus 234 ALe 236 (772)
T KOG0999|consen 234 ALE 236 (772)
T ss_pred HHH
Confidence 544
No 115
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=91.81 E-value=21 Score=44.15 Aligned_cols=125 Identities=24% Similarity=0.293 Sum_probs=82.7
Q ss_pred hcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhhH
Q 001390 207 RLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKN 286 (1088)
Q Consensus 207 rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk~lpgpaa~a~mk~ 286 (1088)
.++++...+.+..|++..+..++.-....-++.... +..+++....++.+.||.-|.+..+..-+.
T Consensus 267 ~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~--------------L~ele~RL~~l~~LkrKyg~s~e~l~~~~~ 332 (563)
T TIGR00634 267 SLRELAEQVGNALTEVEEATRELQNYLDELEFDPER--------------LNEIEERLAQIKRLKRKYGASVEEVLEYAE 332 (563)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH--------------HHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 445555555566666666666666555555554443 456888888999999999998887765444
Q ss_pred HHHhhcCCChhhhhccCCCCCCCcccccCCCCCCCCCcchhhhHHHHHHHhHHHHHHHHHHHhhhhhhhhHHHHHHHHhh
Q 001390 287 EVEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAA 366 (1088)
Q Consensus 287 eve~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eeEnk~lke~L~~k~~ELq~sr~~~a~t~ 366 (1088)
+.+.- . ..+...-..+..++.+-..+++.+.+...+|-..|...|...
T Consensus 333 ~l~~e--------L------------------------~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l 380 (563)
T TIGR00634 333 KIKEE--------L------------------------DQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERL 380 (563)
T ss_pred HHHHH--------H------------------------HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44320 0 001122356777888888888888888999988888888766
Q ss_pred hhhhHHHHHHHHh
Q 001390 367 SKLSEVESQIEEL 379 (1088)
Q Consensus 367 skL~~~e~q~~~~ 379 (1088)
.+ .+..++..|
T Consensus 381 ~~--~v~~~l~~L 391 (563)
T TIGR00634 381 AK--RVEQELKAL 391 (563)
T ss_pred HH--HHHHHHHhC
Confidence 54 556666654
No 116
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=91.54 E-value=44 Score=42.13 Aligned_cols=177 Identities=17% Similarity=0.164 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001390 86 KAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHF-VREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSK 164 (1088)
Q Consensus 86 KaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~-~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k 164 (1088)
++-.++..|+...+....+.-.|+..|..|...+......--. .--+.++. +......|..++..+..
T Consensus 33 qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~-----------Lq~E~~~L~kElE~L~~ 101 (617)
T PF15070_consen 33 QMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQ-----------LQAEAEHLRKELESLEE 101 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHH-----------HHHHHHHHHHHHHHHHH
Confidence 4555666677666666666666666665554443322100000 00011111 11111123333344443
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHH----------HHHHHhhHHHHHHHHHHHHHHH
Q 001390 165 RLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTE----------KENASLKYEVRVLGKELEIRNE 234 (1088)
Q Consensus 165 ~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~E----------KEn~sLKyEl~vlqkELEIr~e 234 (1088)
+|...-..|..|+....+++.-+.+|.........+..+...-|+.++ .+|..||..|..++.-.--++.
T Consensus 102 qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltn 181 (617)
T PF15070_consen 102 QLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTN 181 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333333334445544444444444444444433333333333333332 4566777777777666666665
Q ss_pred HHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001390 235 EREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRK 273 (1088)
Q Consensus 235 Ere~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk 273 (1088)
+..--+-++.+..----++.++...++.+...++..|--
T Consensus 182 e~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~ 220 (617)
T PF15070_consen 182 ENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLEL 220 (617)
T ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 543222232222222236677777777777777755433
No 117
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=91.38 E-value=56 Score=42.40 Aligned_cols=32 Identities=22% Similarity=0.164 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHH
Q 001390 861 ARVDLNEACQKLSSLEVELEDKSNCCEELEAT 892 (1088)
Q Consensus 861 leaEl~qlqeKVsSLE~ELE~er~~lEEl~aK 892 (1088)
++..--+.+-||--||+.|+..|..+-++..+
T Consensus 942 ~K~~EME~QVkvLeLEq~L~~eR~rL~elRK~ 973 (980)
T KOG0980|consen 942 LKTQEMEQQVKVLELEQSLQAERARLGELRKQ 973 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455666777777777777777666543
No 118
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.31 E-value=49 Score=41.63 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=20.4
Q ss_pred hhhhHHHHHHHhHHHHHHHHHHHhhhhh
Q 001390 326 RINFLTEQLRAMEEENNSLKEVLDKKTN 353 (1088)
Q Consensus 326 ~~~~l~~rl~~~eeEnk~lke~L~~k~~ 353 (1088)
.+.-+..++..+++|...+.+-|+.-..
T Consensus 392 ~~~~~~~~~~~~e~el~~l~~~l~~~~~ 419 (650)
T TIGR03185 392 AKSQLLKELRELEEELAEVDKKISTIPS 419 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4556777888888888888887776433
No 119
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=91.27 E-value=0.06 Score=67.47 Aligned_cols=69 Identities=26% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHhhcchHHHHHHHhhHHHHHHH-HHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001390 203 ALMVRLDSTEKENASLKYEVRVLG-KELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLV 271 (1088)
Q Consensus 203 ~Lq~rLE~~EKEn~sLKyEl~vlq-kELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~ 271 (1088)
.+..++..+++||..|+..+.... ..+..+..+.+...+.......+......++..|++++..++.-+
T Consensus 456 ~l~erl~rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~~l 525 (713)
T PF05622_consen 456 ELRERLLRLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQKSL 525 (713)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777788887776554442 222333333333334444444555555566666666666555443
No 120
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.19 E-value=42 Score=43.14 Aligned_cols=52 Identities=13% Similarity=0.269 Sum_probs=32.5
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHhhhhhhHHHHHHHHhhccccccCCccccc
Q 001390 341 NNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQIEELSKGRKIMEPSRTSI 393 (1088)
Q Consensus 341 nk~lke~L~~k~~ELq~sr~~~a~t~skL~~~e~q~~~~s~~~~~~e~~~~~~ 393 (1088)
++..+.-|..-+.+++|--+..+.-.-|++.+++|.+- +..-+.++.+++.+
T Consensus 850 ~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qads-e~l~ka~~~~k~~n 901 (970)
T KOG0946|consen 850 LKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQADS-ETLSKALKTVKSEN 901 (970)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhcc-hHHHHHHHHhhccc
Confidence 44444444555566777788888888999999988873 22333444444433
No 121
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=91.16 E-value=18 Score=39.77 Aligned_cols=84 Identities=14% Similarity=0.123 Sum_probs=38.7
Q ss_pred HHHHhhhhhHhhhHHHHHhhcchHHHHHHHh---------hHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHH
Q 001390 188 EDLGKQRTQAEADSNALMVRLDSTEKENASL---------KYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIA 258 (1088)
Q Consensus 188 ~eLkee~s~~eaei~~Lq~rLE~~EKEn~sL---------KyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIa 258 (1088)
..+...-..+...+.+.+.+++.....+..+ ....-.++.|+..|.-+..|-.+....+.....=......
T Consensus 109 ~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrd 188 (240)
T PF12795_consen 109 IEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRD 188 (240)
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHH
Confidence 3333334444444444444444444444432 3334444444555555555555554444444444444444
Q ss_pred HHHHHHHHHHHHH
Q 001390 259 KLESECQRLRVLV 271 (1088)
Q Consensus 259 kLEaECqRLr~l~ 271 (1088)
-+...++++...+
T Consensus 189 l~~~~~~~l~~~l 201 (240)
T PF12795_consen 189 LLKARIQRLQQQL 201 (240)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 122
>PRK11281 hypothetical protein; Provisional
Probab=91.09 E-value=70 Score=43.03 Aligned_cols=61 Identities=8% Similarity=0.055 Sum_probs=30.2
Q ss_pred HHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001390 201 SNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLR 268 (1088)
Q Consensus 201 i~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr 268 (1088)
...+++++..++.+|..++.++.....-.++....+++. ..++......++.|.+.+...|
T Consensus 194 ~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~-------~~~~~~~~~~~~~lq~~in~kr 254 (1113)
T PRK11281 194 RVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYL-------TARIQRLEHQLQLLQEAINSKR 254 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444 4445555555555555555544
No 123
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=90.84 E-value=6.6 Score=43.71 Aligned_cols=86 Identities=14% Similarity=0.171 Sum_probs=43.9
Q ss_pred hhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 001390 790 NVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEAC 869 (1088)
Q Consensus 790 qLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlq 869 (1088)
.++.++..++.+|..++++....+..+.+.+..+..|..++..+++.-..++..-.........|........-+-..+.
T Consensus 2 ~aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le 81 (246)
T PF00769_consen 2 EAEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLE 81 (246)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------H
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777777777766666666666666666666666666666555544444444444333333333333333
Q ss_pred HHHhhH
Q 001390 870 QKLSSL 875 (1088)
Q Consensus 870 eKVsSL 875 (1088)
.++..+
T Consensus 82 ~e~~e~ 87 (246)
T PF00769_consen 82 QELREA 87 (246)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 124
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.81 E-value=2.5 Score=45.09 Aligned_cols=111 Identities=15% Similarity=0.128 Sum_probs=45.3
Q ss_pred chhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001390 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVD 864 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaE 864 (1088)
...+-.++.+...+.........++-.+...++.++.++......+..++..+..++..+......++....-+..++-|
T Consensus 73 e~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE 152 (194)
T PF08614_consen 73 EQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDE 152 (194)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhHHHHHHHHH
Q 001390 865 LNEACQKLSSLEVELEDKSNCCEELEATCLE 895 (1088)
Q Consensus 865 l~qlqeKVsSLE~ELE~er~~lEEl~aKc~e 895 (1088)
+..++-..+.++..+...+....+|-.|+-+
T Consensus 153 ~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 153 LQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666655555543
No 125
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.80 E-value=6.4 Score=47.10 Aligned_cols=94 Identities=15% Similarity=0.097 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-----HHHHHHhhHHHHHHHh
Q 001390 808 KSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLN-----EACQKLSSLEVELEDK 882 (1088)
Q Consensus 808 kLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~-----qlqeKVsSLE~ELE~e 882 (1088)
+++.-+..+..+-++..+|+.....++.....++..+......++....++...+ |++ .+.--...|+...+.+
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~-E~n~~l~knq~vw~~kl~~~~e~~ 426 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER-EENKKLIKNQDVWRGKLKELEERE 426 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444444444444333 221 1222233444444455
Q ss_pred hhhhHHHHHHHHHHHHHHHh
Q 001390 883 SNCCEELEATCLELQLQLES 902 (1088)
Q Consensus 883 r~~lEEl~aKc~eLeeQLEr 902 (1088)
+..+.....+|++|++||-.
T Consensus 427 ~~~~~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 427 KEALGSKDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 55555666667777777664
No 126
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=90.74 E-value=78 Score=42.91 Aligned_cols=226 Identities=14% Similarity=0.175 Sum_probs=102.8
Q ss_pred HhhhHHHHHHHHhhcccchhHHHHhH----HHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHH
Q 001390 49 VKNLNDKLFSALAECNAKDDLVKKHA----KMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMD 124 (1088)
Q Consensus 49 ~k~l~ekLs~a~~~~~~kd~lvkqh~----kvaeeav~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmk 124 (1088)
...++..++++-.++..+..-++++. .....-|.+|..--+.+..++.+++....+...|.+++..+..+......
T Consensus 308 ~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~ 387 (1201)
T PF12128_consen 308 RDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQ 387 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544443332 22222344444444444455555555555555555555555555555544
Q ss_pred HhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHH
Q 001390 125 QLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNAL 204 (1088)
Q Consensus 125 QLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~L 204 (1088)
.|......+...++.-......+..+.+...+..+..+..++.. .....+..++.+...+..++..+
T Consensus 388 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~l 454 (1201)
T PF12128_consen 388 KLEEAFNRQQERLQAQQDEIREEKAERREQIEEEYQALEQELRQ-------------QSQEQLEELQEQREQLKSELAEL 454 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333322222222222222222233333333333333332211 11122223333333332222222
Q ss_pred -------------HhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001390 205 -------------MVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLV 271 (1088)
Q Consensus 205 -------------q~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~ 271 (1088)
...++..++.+...+.+...+...+..+..+..-.++.-+.+..++-.....+..+++.|..|..++
T Consensus 455 ~~~~~~~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 455 KQQLKNPQYTEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred HHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2333344444444444444444445545555555555556666667777777777777777777665
Q ss_pred HhcCCChHHHhh-hhHHHHh
Q 001390 272 RKRLPGPAALAK-MKNEVEI 290 (1088)
Q Consensus 272 rk~lpgpaa~a~-mk~eve~ 290 (1088)
.|++..|-. ++.++..
T Consensus 535 ---~p~~gSL~~fL~~~~p~ 551 (1201)
T PF12128_consen 535 ---DPQKGSLLEFLRKNKPG 551 (1201)
T ss_pred ---CCCCCcHHHHHHhCCCc
Confidence 455555533 4444443
No 127
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=90.54 E-value=9.8 Score=49.76 Aligned_cols=28 Identities=11% Similarity=0.288 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHhhhhcCchhHHHHHH
Q 001390 668 ELSDILQQFVHACYGVLNKEADFNKFAN 695 (1088)
Q Consensus 668 el~~~Le~f~~~c~~~L~gk~~l~~f~~ 695 (1088)
.|-.||.-+|.--.-|.+.+..|-+...
T Consensus 325 TLGRVInALVe~s~HIPYRESKLTRLLQ 352 (1041)
T KOG0243|consen 325 TLGRVINALVEHSGHIPYRESKLTRLLQ 352 (1041)
T ss_pred HHHHHHHHHHccCCCCCchHHHHHHHHH
Confidence 5667777777777777777777777633
No 128
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.47 E-value=5.8 Score=39.90 Aligned_cols=94 Identities=20% Similarity=0.187 Sum_probs=49.8
Q ss_pred hhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001390 787 EFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLN 866 (1088)
Q Consensus 787 eLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~ 866 (1088)
-+++|.+.+..++.++..++.++..+..+...+..+|-.|-.+.+.++. ...++..++.++.
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~------------------~~~~~~~L~~el~ 78 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRA------------------LKKEVEELEQELE 78 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHH
Confidence 3566677666666666666666666655555555555554444433322 2233333444444
Q ss_pred HHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 001390 867 EACQKLSSLEVELEDKSNCCEELEATCLELQL 898 (1088)
Q Consensus 867 qlqeKVsSLE~ELE~er~~lEEl~aKc~eLee 898 (1088)
.++.+..++=.=+..+.-..+|+...+.+++.
T Consensus 79 ~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 79 ELQQRYQTLLELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 44444444444455555555555555555544
No 129
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=90.29 E-value=59 Score=40.77 Aligned_cols=103 Identities=20% Similarity=0.176 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---
Q 001390 89 AEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKR--- 165 (1088)
Q Consensus 89 aE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~--- 165 (1088)
+|+.-.-..|+++.+..+.+|.++.+|.+.|.+.-...+..+ ---++ +........++....|=..+..++..
T Consensus 235 aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~---~~~i~-~~~~~L~~kd~~i~~L~~di~~~~~S~~~ 310 (629)
T KOG0963|consen 235 AEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAK---IDDID-ALGSVLNQKDSEIAQLSNDIERLEASLVE 310 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc---CCchH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788999999999999999999999988776553321 01111 11222333444444444444444333
Q ss_pred -HHHhhhhhhhhhHHHHHHHHHHHHHHhhhh
Q 001390 166 -LAKLGVENTHLTKALLAKEKLIEDLGKQRT 195 (1088)
Q Consensus 166 -L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s 195 (1088)
+.+..+....|.+-+-++...+++|+++..
T Consensus 311 e~e~~~~qI~~le~~l~~~~~~leel~~kL~ 341 (629)
T KOG0963|consen 311 EREKHKAQISALEKELKAKISELEELKEKLN 341 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 233333333444445555555555555554
No 130
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=90.13 E-value=7.5 Score=45.67 Aligned_cols=85 Identities=12% Similarity=0.169 Sum_probs=40.0
Q ss_pred hhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001390 787 EFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLN 866 (1088)
Q Consensus 787 eLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~ 866 (1088)
-+++++.-...+...+..+...|..+..++...-.+|.. .=..+..||..+...|+.+..+|.+.+.+++
T Consensus 221 hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~s----------REk~iN~qle~l~~eYr~~~~~ls~~~~~y~ 290 (359)
T PF10498_consen 221 HLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIES----------REKYINNQLEPLIQEYRSAQDELSEVQEKYK 290 (359)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666655555555555555555444444333222222 1122333444444455555555555555555
Q ss_pred HHHHHHhhHHHHHHH
Q 001390 867 EACQKLSSLEVELED 881 (1088)
Q Consensus 867 qlqeKVsSLE~ELE~ 881 (1088)
+...-|..+..+|..
T Consensus 291 ~~s~~V~~~t~~L~~ 305 (359)
T PF10498_consen 291 QASEGVSERTRELAE 305 (359)
T ss_pred HHhhHHHHHHHHHHH
Confidence 555555544444444
No 131
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.05 E-value=14 Score=44.44 Aligned_cols=18 Identities=17% Similarity=0.206 Sum_probs=10.9
Q ss_pred cceeeeecccchhhHHHH
Q 001390 656 GYMVRVFQWKTSELSDIL 673 (1088)
Q Consensus 656 ~~~~~~~~~k~sel~~~L 673 (1088)
+.+--.|.|..+++...+
T Consensus 122 ~vi~Is~~~~dP~~Aa~i 139 (498)
T TIGR03007 122 NLFTISYEDKDPELAKDV 139 (498)
T ss_pred CeEEEEeeCCCHHHHHHH
Confidence 333334888888765544
No 132
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.05 E-value=13 Score=47.18 Aligned_cols=144 Identities=17% Similarity=0.209 Sum_probs=82.7
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHH-------HHHHHHH
Q 001390 795 NKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKV-------ARVDLNE 867 (1088)
Q Consensus 795 K~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~e-------leaEl~q 867 (1088)
+......++....+.+...+.+..+...|.|++..|.-+--+.+.++++++.+......-..+..+ .+.-...
T Consensus 467 ~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ 546 (1118)
T KOG1029|consen 467 ITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQA 546 (1118)
T ss_pred cchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHH
Confidence 333344444444555555556666666666666666666667777777777665444332222222 2333344
Q ss_pred HHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhcCCCCcccchhhhhhhhhhHhHHHHHhhHHHHHHHHHHHHHHH
Q 001390 868 ACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTKSGIPTDELKQDEKQIQTDWEIATASEKLAECQETILNLGKQL 947 (1088)
Q Consensus 868 lqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~~~~~~~~~~~e~~~~kqe~EIaaAAeKLAECQETI~~LGKQL 947 (1088)
+..++..|.+|.+.+-..+..+.....+|.+.+-. ++++-+...-.--+||-|.|--++.|-++-
T Consensus 547 ikdqldelskE~esk~~eidi~n~qlkelk~~~~~---------------q~lake~~yk~e~d~~ke~et~~lel~~~k 611 (1118)
T KOG1029|consen 547 IKDQLDELSKETESKLNEIDIFNNQLKELKEDVNS---------------QQLAKEELYKNERDKLKEAETKALELIGEK 611 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44556666666666655555555555555554442 233334344445678999999999998888
Q ss_pred hhccCc
Q 001390 948 KALASP 953 (1088)
Q Consensus 948 KaLa~~ 953 (1088)
++=..+
T Consensus 612 e~e~~~ 617 (1118)
T KOG1029|consen 612 EAESAP 617 (1118)
T ss_pred hhccch
Confidence 755444
No 133
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.66 E-value=4.1 Score=46.86 Aligned_cols=87 Identities=16% Similarity=0.135 Sum_probs=49.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001390 801 CLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELE 880 (1088)
Q Consensus 801 rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE 880 (1088)
.+..+..+++.+..+..++.++|.+|+.+.+.+...+..++.+.+.+...-...-..++.+..++.+..+...+++..++
T Consensus 44 ~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~ 123 (314)
T PF04111_consen 44 DIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYE 123 (314)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555555544445555666666666666666666666666
Q ss_pred HhhhhhH
Q 001390 881 DKSNCCE 887 (1088)
Q Consensus 881 ~er~~lE 887 (1088)
+....++
T Consensus 124 ~~~~~L~ 130 (314)
T PF04111_consen 124 YASNQLD 130 (314)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555544
No 134
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.61 E-value=42 Score=38.15 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHh
Q 001390 85 EKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQL 126 (1088)
Q Consensus 85 eKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQL 126 (1088)
.....++..++..+..+..+...++++|......|++=+|-+
T Consensus 69 ~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAm 110 (265)
T COG3883 69 DELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAM 110 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888888888888889999998888888877665
No 135
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=89.43 E-value=77 Score=41.76 Aligned_cols=70 Identities=21% Similarity=0.162 Sum_probs=43.8
Q ss_pred hhHHHHHhhcchHHHHHHHhhHHHHHHHH-HHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001390 199 ADSNALMVRLDSTEKENASLKYEVRVLGK-ELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKR 274 (1088)
Q Consensus 199 aei~~Lq~rLE~~EKEn~sLKyEl~vlqk-ELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk~ 274 (1088)
...+.|...+--+|+||+.|-.+|+.+.. ...+-.-| +..+.-.-+|-+..+-|.+|. ..+|=+..+++.
T Consensus 530 ~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LE-----q~~n~lE~~~~elkk~idaL~-alrrhke~LE~e 600 (1195)
T KOG4643|consen 530 NKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLE-----QNNNDLELIHNELKKYIDALN-ALRRHKEKLEEE 600 (1195)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHH-----HhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 34455566666677777777777776655 22222222 333444567888888899998 667766666664
No 136
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=89.21 E-value=0.11 Score=66.43 Aligned_cols=108 Identities=23% Similarity=0.230 Sum_probs=10.5
Q ss_pred hhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001390 789 INVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEA 868 (1088)
Q Consensus 789 EqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~ql 868 (1088)
..+++.+.+++.+|..=+..-..+.-.++.++..+.+|.-+++.-......+.+.+..+...++.+.-++.+++.+..+.
T Consensus 746 ~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~~q~ee~~k~~~~~~d~~~kl~~k~k~~krq~eeaEe~~~~~ 825 (859)
T PF01576_consen 746 AKLEARIRELEEELESEQRRRAEAQKQLRKLERRVKELQFQVEEERKNAERLQDLVDKLQLKLKQLKRQLEEAEEEASRN 825 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 34455555555555544444444555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHhhHHHHHHHhhhhhHHHHHHHHHH
Q 001390 869 CQKLSSLEVELEDKSNCCEELEATCLEL 896 (1088)
Q Consensus 869 qeKVsSLE~ELE~er~~lEEl~aKc~eL 896 (1088)
..+...+..+|+...-....+...+..+
T Consensus 826 ~~k~Rk~q~elee~~e~~~~~e~~l~~l 853 (859)
T PF01576_consen 826 LAKYRKLQRELEEAEERAEAAERELNKL 853 (859)
T ss_dssp -----SSSSHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555444444444443333
No 137
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=88.87 E-value=5.4 Score=49.24 Aligned_cols=73 Identities=26% Similarity=0.292 Sum_probs=45.5
Q ss_pred HHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHH
Q 001390 821 KIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQ 897 (1088)
Q Consensus 821 ~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLe 897 (1088)
.++.+|+..+..++..+.+++.++..+..... .-...+-++..+..+|..|+.+|..++...++|..++.++.
T Consensus 436 ~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~----~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 436 EENSELKRELEELKREIEKLESELERFRREVR----DKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444443332 11123466777888999999999999999999998888877
No 138
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=88.80 E-value=51 Score=40.63 Aligned_cols=97 Identities=24% Similarity=0.266 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHH
Q 001390 151 SLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELE 230 (1088)
Q Consensus 151 ~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELE 230 (1088)
++.-++.+|.++-.++....+++ ..+..+-..|..+|+..+++...+..++..+...+.
T Consensus 414 Ik~~Y~~RI~eLt~qlQ~adSKa---------------------~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~ 472 (518)
T PF10212_consen 414 IKSYYMSRIEELTSQLQHADSKA---------------------VHFYAECRALQKRLESAEKEKESLEEELKEANQNIS 472 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666655555444442 246667778888999889988888888888888888
Q ss_pred HHHHHHHHhHHhH----HHHHHhHHHHHHHHHHHHHHHHHHH
Q 001390 231 IRNEEREFNRRTA----DESHKQHLESVKKIAKLESECQRLR 268 (1088)
Q Consensus 231 Ir~eEre~s~ksa----EaA~KQhlEsvKKIakLEaECqRLr 268 (1088)
.+.+|.+-.++.. .+-+++...+..++++...|++-|+
T Consensus 473 ~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 473 RLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888777654 5788999999999999999999998
No 139
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.71 E-value=4.6 Score=43.99 Aligned_cols=12 Identities=17% Similarity=0.075 Sum_probs=4.4
Q ss_pred hhhhHhhhhHHH
Q 001390 788 FINVEAGNKVRQ 799 (1088)
Q Consensus 788 LEqLesEK~eLE 799 (1088)
+.+++.++..++
T Consensus 95 lp~le~el~~l~ 106 (206)
T PRK10884 95 VPDLENQVKTLT 106 (206)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 140
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.58 E-value=40 Score=36.58 Aligned_cols=95 Identities=18% Similarity=0.196 Sum_probs=42.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 001390 804 SAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKS 883 (1088)
Q Consensus 804 ~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er 883 (1088)
+..++++..+.+....+..+.++..+...+.+.+..++.+..++...+.. |..-...+.....++..+++++...+
T Consensus 31 sLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~----y~kdK~~L~~~k~rl~~~ek~l~~Lk 106 (201)
T PF13851_consen 31 SLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN----YEKDKQSLQNLKARLKELEKELKDLK 106 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444333321 22223334444444555555555555
Q ss_pred hhhHHHHHHHHHHHHHHHh
Q 001390 884 NCCEELEATCLELQLQLES 902 (1088)
Q Consensus 884 ~~lEEl~aKc~eLeeQLEr 902 (1088)
-.++-+..+|.+++.+-..
T Consensus 107 ~e~evL~qr~~kle~Erde 125 (201)
T PF13851_consen 107 WEHEVLEQRFEKLEQERDE 125 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555444
No 141
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=88.44 E-value=80 Score=39.81 Aligned_cols=18 Identities=11% Similarity=0.134 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 001390 86 KAEAEVVSLKQELDAALQ 103 (1088)
Q Consensus 86 KaEaE~~slKkqLe~~~q 103 (1088)
.+++++..+..++....+
T Consensus 266 ~Le~ei~~le~e~~e~~~ 283 (650)
T TIGR03185 266 QLERQLKEIEAARKANRA 283 (650)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 142
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=88.34 E-value=1e+02 Score=40.98 Aligned_cols=67 Identities=24% Similarity=0.120 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHHHHHHhhccCchhhhccccccccCCCccc-cccccchhhhhhhhhhccchhHhhhhhc
Q 001390 931 EKLAECQETILNLGKQLKALASPREAALFDKVIHTPTDTVS-TAAAATTTLQKNKMINQRSSLLDQMMAE 999 (1088)
Q Consensus 931 eKLAECQETI~~LGKQLKaLa~~~e~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~rss~~~~mlae 999 (1088)
+|+-.|=++|...-.-+..+.-|. +.-|.--.+-.|..+ --.+.+.|....+..+.|=.-..+|.-+
T Consensus 818 ~~~K~~l~~l~~~E~~~~~~e~~~--~e~~~ka~~~cp~~~~ei~~~~~~~~eik~ei~rlk~~i~~~ee 885 (1074)
T KOG0250|consen 818 DKLKSRLEELKQKEVEKVNLEEPR--AEEDQKARTECPEEGIEIEALGKTVAEIKREIKRLKRQIQMCEE 885 (1074)
T ss_pred HHHHHhhHHHHHHHHHHHhhhcch--hhhCchhhhhCccccchhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888776554 222222222222221 1111233556777777777777777665
No 143
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=88.16 E-value=36 Score=45.57 Aligned_cols=57 Identities=14% Similarity=0.059 Sum_probs=36.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001390 215 NASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLV 271 (1088)
Q Consensus 215 n~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~ 271 (1088)
...|+.|...+..+++.+..+..-+.+..|-+..|+-...+++..++++.+.|+..+
T Consensus 175 ~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~i 231 (1109)
T PRK10929 175 LTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQL 231 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555566666666777777777888888888887544
No 144
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=88.01 E-value=70 Score=38.63 Aligned_cols=45 Identities=20% Similarity=0.147 Sum_probs=29.8
Q ss_pred hHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHH
Q 001390 200 DSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTAD 244 (1088)
Q Consensus 200 ei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaE 244 (1088)
++...++.++.=..++..+.++....+..|+.+.+|+.-..+.++
T Consensus 172 ~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~ 216 (420)
T COG4942 172 QLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLN 216 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445566666666666667777777777887777776665543
No 145
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.00 E-value=19 Score=45.93 Aligned_cols=72 Identities=10% Similarity=0.103 Sum_probs=39.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhH
Q 001390 141 VMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKY 220 (1088)
Q Consensus 141 ~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKy 220 (1088)
+.++.++..+-+..|..++..+-..+.. ..-.|+ ..-.+++++...+..++..++.+++.+.++....++
T Consensus 598 LaeR~e~a~d~Qe~L~~R~~~vl~~l~~---~~P~LS-------~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~ 667 (717)
T PF10168_consen 598 LAERYEEAKDKQEKLMKRVDRVLQLLNS---QLPVLS-------EAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQR 667 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555566666555443321 111144 334556666667777777777777777666665554
Q ss_pred HH
Q 001390 221 EV 222 (1088)
Q Consensus 221 El 222 (1088)
.+
T Consensus 668 ~i 669 (717)
T PF10168_consen 668 QI 669 (717)
T ss_pred HH
Confidence 33
No 146
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=87.93 E-value=60 Score=39.12 Aligned_cols=6 Identities=33% Similarity=1.010 Sum_probs=2.3
Q ss_pred CCCCcc
Q 001390 320 PDTPSK 325 (1088)
Q Consensus 320 ~~~~~~ 325 (1088)
|..|.+
T Consensus 408 P~~P~~ 413 (498)
T TIGR03007 408 PSGPNR 413 (498)
T ss_pred CCCCcH
Confidence 333433
No 147
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=87.90 E-value=16 Score=36.85 Aligned_cols=72 Identities=22% Similarity=0.261 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHH
Q 001390 809 SNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEE 888 (1088)
Q Consensus 809 LE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEE 888 (1088)
++.+.++++-.+.++..++.++..+......+..++-.+.... -++......+..|+.++...+..+..
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~-----------e~~~~~~~~~~~L~~el~~l~~ry~t 86 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEEN-----------EELRALKKEVEELEQELEELQQRYQT 86 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555544433222 22233334444455555555555554
Q ss_pred HHH
Q 001390 889 LEA 891 (1088)
Q Consensus 889 l~a 891 (1088)
+..
T Consensus 87 ~Le 89 (120)
T PF12325_consen 87 LLE 89 (120)
T ss_pred HHH
Confidence 443
No 148
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=87.90 E-value=4.5 Score=44.50 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=12.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001390 851 NEDLDTQLKVARVDLNEACQKLSSLEVELED 881 (1088)
Q Consensus 851 le~LesqL~eleaEl~qlqeKVsSLE~ELE~ 881 (1088)
|+..+.+|..++.+..++.++...|..+..+
T Consensus 165 ~ee~~erlk~le~E~s~LeE~~~~l~~ev~~ 195 (290)
T COG4026 165 YEEVQERLKRLEVENSRLEEMLKKLPGEVYD 195 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhHHHH
Confidence 3333344444444444444444444433333
No 149
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=87.89 E-value=1e+02 Score=40.42 Aligned_cols=47 Identities=19% Similarity=0.190 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001390 226 GKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVR 272 (1088)
Q Consensus 226 qkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~r 272 (1088)
.+.+.....+........+.+.....+..+..+.++.+|.+++..+.
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~ 434 (908)
T COG0419 388 EEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIK 434 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444455555555555555555555555554443
No 150
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=87.84 E-value=60 Score=38.67 Aligned_cols=85 Identities=7% Similarity=0.076 Sum_probs=50.7
Q ss_pred chhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHH-------HHHHHHHHHHHHhhhHHHH
Q 001390 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKE-------VIEDQVKLQKMINEDLDTQ 857 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~s-------elEeQLk~~~e~le~Lesq 857 (1088)
..+++..+.+|...+.+.+....+++......+..++++..++..+..++..+. .+...++...+++..++.+
T Consensus 87 rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq 166 (499)
T COG4372 87 RTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQ 166 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777766666667777666666666666666655555544444 4444455555555555555
Q ss_pred HHHHHHHHHHHH
Q 001390 858 LKVARVDLNEAC 869 (1088)
Q Consensus 858 L~eleaEl~qlq 869 (1088)
+.-+-++-.+++
T Consensus 167 ~qsl~a~~k~LQ 178 (499)
T COG4372 167 AQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHH
Confidence 555555555555
No 151
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=87.79 E-value=97 Score=40.02 Aligned_cols=101 Identities=25% Similarity=0.320 Sum_probs=55.5
Q ss_pred HHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHh-------------HHHHHHHHHHHHHH
Q 001390 95 KQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQE--QRIHDAVMKAS-------------MEFEQSLMILEEKL 159 (1088)
Q Consensus 95 KkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqE--qki~da~~kks-------------~E~Ek~~~eLE~kL 159 (1088)
...++++...+-+++++++.++.++..-.+....+.++++ |++..-++.-+ .-++..-..|+.--
T Consensus 186 ~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~sa 265 (1265)
T KOG0976|consen 186 QTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQASA 265 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhhhhHHHHHHHHHHHHHH
Confidence 3455666777778888888888888877655433333333 33333332222 12222223333332
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhh
Q 001390 160 AETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRT 195 (1088)
Q Consensus 160 ~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s 195 (1088)
.++....-..++.|..|.+-|..++.++..+++++.
T Consensus 266 k~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd 301 (1265)
T KOG0976|consen 266 KEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELD 301 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 333333444566677777777777777766666554
No 152
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=87.79 E-value=24 Score=44.92 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=26.7
Q ss_pred HHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHH
Q 001390 185 KLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKE 228 (1088)
Q Consensus 185 ~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkE 228 (1088)
.++.+|+.+...++.++.++..+.-+---+...++.++..+...
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~ 331 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQ 331 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Confidence 45666777777777666666666555444555555555555544
No 153
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=87.58 E-value=40 Score=38.21 Aligned_cols=145 Identities=14% Similarity=0.225 Sum_probs=75.0
Q ss_pred hhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 001390 103 QQRDTGEERLIHLDAALKECMDQLHFVREEQE----QRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTK 178 (1088)
Q Consensus 103 qq~v~lEErvkhLd~aLKecmkQLr~~rEEqE----qki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~ 178 (1088)
.+...|+..|..|++.+++..++|++++-=.+ -+... ++.=.+++..++...+.++.++......+.+. |++
T Consensus 81 ~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vq-Ia~L~rqlq~lk~~qqdEldel~e~~~~el~~---l~~ 156 (258)
T PF15397_consen 81 SKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQ-IANLVRQLQQLKDSQQDELDELNEMRQMELAS---LSR 156 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 44556777777777777777777776654333 11111 22234666777777777777777766555555 554
Q ss_pred HHHHHHH-HHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHH
Q 001390 179 ALLAKEK-LIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKI 257 (1088)
Q Consensus 179 ~l~~~~~-ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKI 257 (1088)
..+.+.. +...+.+.+ +...+..|=-.-.+|..+++++..-.++++-+.++- -.+...|
T Consensus 157 ~~q~k~~~il~~~~~k~------~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I--------------~~L~~eV 216 (258)
T PF15397_consen 157 KIQEKKEEILSSAAEKT------QSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEI--------------PQLRAEV 216 (258)
T ss_pred HHHHHHHHHHHHHHHHH------HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH
Confidence 4444322 222232222 122222222233555566665555555544444333 3333445
Q ss_pred HHHHHHHHHHHHHH
Q 001390 258 AKLESECQRLRVLV 271 (1088)
Q Consensus 258 akLEaECqRLr~l~ 271 (1088)
..|.+..+.-|..|
T Consensus 217 ~~L~~~~~~~Re~i 230 (258)
T PF15397_consen 217 EQLQAQAQDPREVI 230 (258)
T ss_pred HHHHHhhcchHHHh
Confidence 55555555555554
No 154
>PRK12704 phosphodiesterase; Provisional
Probab=87.39 E-value=30 Score=42.67 Aligned_cols=102 Identities=24% Similarity=0.198 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHH
Q 001390 145 SMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRV 224 (1088)
Q Consensus 145 s~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~v 224 (1088)
-.++.+.+.+++.++.+...+|...+. .|..|+.-+..-.+....-+.++...+..|+..++++..++.++..
T Consensus 63 eeE~~~~R~Ele~e~~~~e~~L~qrE~-------rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~ 135 (520)
T PRK12704 63 KEEIHKLRNEFEKELRERRNELQKLEK-------RLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEE 135 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666665555555433322 2334444443333333344444444444444444444444444443
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHHHhHHHHHH
Q 001390 225 LGKELEIRNEEREFNRRTADESHKQHLESVK 255 (1088)
Q Consensus 225 lqkELEIr~eEre~s~ksaEaA~KQhlEsvK 255 (1088)
+..+....-+ ..+-=+.+.|++++++..+
T Consensus 136 ~~~~~~~~l~--~~a~lt~~ea~~~l~~~~~ 164 (520)
T PRK12704 136 LIEEQLQELE--RISGLTAEEAKEILLEKVE 164 (520)
T ss_pred HHHHHHHHHH--HHhCCCHHHHHHHHHHHHH
Confidence 3333222111 1222244666666665544
No 155
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.34 E-value=8.4 Score=42.01 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHH
Q 001390 861 ARVDLNEACQKLSSLEVELED 881 (1088)
Q Consensus 861 leaEl~qlqeKVsSLE~ELE~ 881 (1088)
++.++..+++++..|+.+++.
T Consensus 144 L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 144 LKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444433
No 156
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=87.25 E-value=1e+02 Score=39.69 Aligned_cols=269 Identities=22% Similarity=0.288 Sum_probs=140.3
Q ss_pred HHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHH--HHHHHHHHHhHHH
Q 001390 71 KKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQ--RIHDAVMKASMEF 148 (1088)
Q Consensus 71 kqh~kvaeeav~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEq--ki~da~~kks~E~ 148 (1088)
..|-+||...+.-=|-. |.+.-.+-..|..||..|..-||.+...+..++.|.++ .++..+.+..+.+
T Consensus 5 ~~~~~~~~~g~~~Ee~L----------l~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~ 74 (717)
T PF09730_consen 5 SNHKKVAKDGEEREESL----------LQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDL 74 (717)
T ss_pred hHHHHHHhcchhhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667776655433322 33344445567778888888888888888888877774 3444555566677
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHH
Q 001390 149 EQSLMILEEKLAETSKRL-------AKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYE 221 (1088)
Q Consensus 149 Ek~~~eLE~kL~El~k~L-------~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyE 221 (1088)
+..+..|...|-++..+= ..++.||-.|. ...+.. ..-|.+++ .+|+|
T Consensus 75 e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQ--------------Kqvs~L----k~sQvefE-------~~Khe 129 (717)
T PF09730_consen 75 ELERKRLREEIKEYKFREARLLQDYSELEEENISLQ--------------KQVSVL----KQSQVEFE-------GLKHE 129 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH--------------HHHHHH----HHhHHHHH-------HHHHH
Confidence 777777777777776642 23344443333 222211 11234444 55666
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHhhhhHHHHhhcCC-
Q 001390 222 VRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKR------LPGPAALAKMKNEVEILGRE- 294 (1088)
Q Consensus 222 l~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk~------lpgpaa~a~mk~eve~~~~~- 294 (1088)
|..+..|+++++...+-..+==+-|.+|..|.-..+.. | |.-+.-+||- .+.+.-+..|-..++.+...
T Consensus 130 i~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~---E-Reqk~~LrkEL~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (717)
T PF09730_consen 130 IKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKS---E-REQKNALRKELDQHLNIESISYLSNLAISLDGLKFSE 205 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHhcCccccccccchhhccccccccc
Confidence 66666666666666666555555666666555433322 1 2223333332 23322233333344333100
Q ss_pred --------Chh-----h------hhccCCCCCCCccc--ccCCCC-----------CCCCCcchhhhHHHHHHHhHHHHH
Q 001390 295 --------SPE-----T------RRKRLNSSPLGSMV--DSAFDN-----------PPDTPSKRINFLTEQLRAMEEENN 342 (1088)
Q Consensus 295 --------~~~-----~------r~~~~~~~~~~~~~--~~~~~~-----------~~~~~~~~~~~l~~rl~~~eeEnk 342 (1088)
..+ . ..++.++ +..+ ....+. .++...-++.-|-.+|.-||-|..
T Consensus 206 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~lv~DLfSEl~~~EiqKL~qQL~qve~EK~ 282 (717)
T PF09730_consen 206 DPRAATEPNNDDEEENGGLNGGPGLAKGNG---DNRMSTPRKSESFSPAPSLVSDLFSELNLSEIQKLKQQLLQVEREKS 282 (717)
T ss_pred ccccccCCCCchhhhcchhhccchhccccc---ccccCCCCCCCCCCCCCcccchhhhhcchHHHHHHHHHHHHHhhHHH
Confidence 000 0 0000000 0000 000111 111112235678889999999999
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHhhhhhhHHHHHHHHhhc
Q 001390 343 SLKEVLDKKTNELQFSRTMYARAASKLSEVESQIEELSK 381 (1088)
Q Consensus 343 ~lke~L~~k~~ELq~sr~~~a~t~skL~~~e~q~~~~s~ 381 (1088)
.|-..|-.-...|..++.-.+.--.|+..|-.++.-+..
T Consensus 283 ~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 283 SLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 997776666666666666656555566666666664433
No 157
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=87.14 E-value=11 Score=37.38 Aligned_cols=37 Identities=14% Similarity=0.303 Sum_probs=18.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhH
Q 001390 851 NEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCE 887 (1088)
Q Consensus 851 le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lE 887 (1088)
.+.|.+.++.++.+.....+++..|+.++....+.++
T Consensus 39 kd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 39 KDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555544444444444
No 158
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=87.00 E-value=1.4e+02 Score=41.10 Aligned_cols=87 Identities=20% Similarity=0.193 Sum_probs=47.8
Q ss_pred HhhhHHHHHHHHhhcccchhHHHHhHH----HHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHH
Q 001390 49 VKNLNDKLFSALAECNAKDDLVKKHAK----MAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMD 124 (1088)
Q Consensus 49 ~k~l~ekLs~a~~~~~~kd~lvkqh~k----vaeeav~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmk 124 (1088)
+..+.++|...-..+.+=..++..|-. ++......|=.+..+...++.++..++.....+++++..+...+....+
T Consensus 232 ~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 311 (1353)
T TIGR02680 232 LDEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALER 311 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444432 4445556666666666666666666666666666666666666666665
Q ss_pred HhhhhhHHHHH
Q 001390 125 QLHFVREEQEQ 135 (1088)
Q Consensus 125 QLr~~rEEqEq 135 (1088)
++..++.+-+.
T Consensus 312 ~~~~l~~~~~~ 322 (1353)
T TIGR02680 312 EADALRTRLEA 322 (1353)
T ss_pred HHHHHHHHHHH
Confidence 55555444443
No 159
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=86.98 E-value=28 Score=46.58 Aligned_cols=61 Identities=13% Similarity=0.089 Sum_probs=34.9
Q ss_pred HHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001390 201 SNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLR 268 (1088)
Q Consensus 201 i~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr 268 (1088)
...+++++...+.++..++.++.....-.++....+++ ..+++......+..|...+.+.|
T Consensus 175 ~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl-------~~~~~~~l~~~~~~Lq~~in~kR 235 (1109)
T PRK10929 175 LTALQAESAALKALVDELELAQLSANNRQELARLRSEL-------AKKRSQQLDAYLQALRNQLNSQR 235 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555554 45555666666666666666666
No 160
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=86.85 E-value=27 Score=38.59 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhH
Q 001390 856 TQLKVARVDLNEACQKLSSLEVELEDKSNCCE 887 (1088)
Q Consensus 856 sqL~eleaEl~qlqeKVsSLE~ELE~er~~lE 887 (1088)
.++..++.++.....++..++..++..+..+.
T Consensus 77 ~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 77 ERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444433333
No 161
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=86.80 E-value=29 Score=38.42 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=13.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001390 829 ELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVD 864 (1088)
Q Consensus 829 ELesLeES~selEeQLk~~~e~le~LesqL~eleaE 864 (1088)
++..++..+..+...+..+...++....++..++..
T Consensus 64 ~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~ 99 (302)
T PF10186_consen 64 EIEELRERLERLRERIERLRKRIEQKRERLEELRES 99 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 162
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=86.79 E-value=19 Score=40.10 Aligned_cols=116 Identities=17% Similarity=0.226 Sum_probs=75.2
Q ss_pred chhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001390 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVD 864 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaE 864 (1088)
++.+.+++.+.......|...+..+..+..+++.++..-..|......++..++.++.+..........|..++..+..+
T Consensus 11 e~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~ 90 (246)
T PF00769_consen 11 EERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAE 90 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888888888888888888888888888888888888888888888888777777666666677777766666
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001390 865 LNEACQKLSSLEVELEDKSNCCEELEATCLELQLQL 900 (1088)
Q Consensus 865 l~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQL 900 (1088)
+..+..-+..-+.|....+..+.+..........+|
T Consensus 91 i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 91 IARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666655555555555555554
No 163
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=86.77 E-value=26 Score=35.76 Aligned_cols=84 Identities=13% Similarity=0.154 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhH
Q 001390 808 KSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCE 887 (1088)
Q Consensus 808 kLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lE 887 (1088)
....-....+.+..++..+...+..++..+..+++++......+..+..+...+..++..+..++.....|+...+..++
T Consensus 46 ~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~ 125 (151)
T PF11559_consen 46 QRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQ 125 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555555555555555555555555554444445555555555555555555555555555554444
Q ss_pred HHHH
Q 001390 888 ELEA 891 (1088)
Q Consensus 888 El~a 891 (1088)
...+
T Consensus 126 ~~~t 129 (151)
T PF11559_consen 126 QRKT 129 (151)
T ss_pred HHHH
Confidence 3333
No 164
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=86.61 E-value=27 Score=38.28 Aligned_cols=69 Identities=16% Similarity=0.179 Sum_probs=40.5
Q ss_pred hhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhH
Q 001390 786 SEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDL 854 (1088)
Q Consensus 786 eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~L 854 (1088)
.++.++..++..+...|.+.......+..+.+.+..-+..++.--+.|+..+.++...+......|..+
T Consensus 69 ~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aL 137 (207)
T PF05010_consen 69 AEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQAL 137 (207)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666665555555555555555566666666666666666666665555555444
No 165
>PF13514 AAA_27: AAA domain
Probab=86.56 E-value=1.3e+02 Score=40.34 Aligned_cols=303 Identities=22% Similarity=0.258 Sum_probs=142.4
Q ss_pred hhHhHhhhHHHHHHHHhhcccchhHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHH
Q 001390 45 LENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMD 124 (1088)
Q Consensus 45 ~~~~~k~l~ekLs~a~~~~~~kd~lvkqh~kvaeeav~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmk 124 (1088)
+...+..+-.-|..+|..+.. +.-+.--...++..+.-|+.+.+....+..++..+..+....+.++..+...+.....
T Consensus 630 ~~~~~~~~~~~L~~~l~~~~~-~~~l~~~l~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1111)
T PF13514_consen 630 LRARRAAARAALAAALAALGP-AEELAALLEEAEALLEEWEQAAARREQLEEELQQLEQELEEAEAELQEAQEALEEWQE 708 (1111)
T ss_pred HHHHHHHHHHHHHHHHHhCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666667777766655 3222223334455555666665555555555555555555555555554444444444
Q ss_pred Hhh-------hhhHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH------HHHHHHH
Q 001390 125 QLH-------FVREEQEQRIHDAV--MKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLA------KEKLIED 189 (1088)
Q Consensus 125 QLr-------~~rEEqEqki~da~--~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~------~~~ii~e 189 (1088)
+.. ..-.-.-..+.+.+ .....+.......++.++..++..+...+.+...|-..+.. -...+..
T Consensus 709 ~w~~~l~~~gL~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~ 788 (1111)
T PF13514_consen 709 EWQEALAELGLPADASPEEALEALELLEELREALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEA 788 (1111)
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHH
Confidence 432 22221111121111 11123333333444455555555444444443333222111 0134444
Q ss_pred HHhhhhhHh---hhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHH
Q 001390 190 LGKQRTQAE---ADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQR 266 (1088)
Q Consensus 190 Lkee~s~~e---aei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqR 266 (1088)
|+.....+. ..+..++.+++.++.+...+..++..+..++.-+-..-.. ...+. =....+.......+..++..
T Consensus 789 L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~a~~--~~~e~-l~~~~~~~~~~~~l~~~~~~ 865 (1111)
T PF13514_consen 789 LRARLEEAREAQEERERLQEQLEELEEELEQAEEELEELEAELAELLEQAGV--EDEEE-LREAEERAEERRELREELED 865 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 444444332 3334445555555555555555555555554433321111 11111 12233334445556666666
Q ss_pred HHHHHHhcCCChHHHhhhhHHHHhhcCCChhhhhccCCCCCCCcccccCCCCCCCCCcchhhhHHHHHHHhHHHHHHHHH
Q 001390 267 LRVLVRKRLPGPAALAKMKNEVEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLKE 346 (1088)
Q Consensus 267 Lr~l~rk~lpgpaa~a~mk~eve~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eeEnk~lke 346 (1088)
++..+..-..|. .+.....|++.. + ++.....+..+..++..++.+...|.+
T Consensus 866 ~~~~l~~~~~~~-~~~~l~~e~~~~--d-------------------------~~~l~~~l~~l~~~l~~l~~~~~~l~~ 917 (1111)
T PF13514_consen 866 LERQLERQADGL-DLEELEEELEEL--D-------------------------PDELEAELEELEEELEELEEELEELQE 917 (1111)
T ss_pred HHHHHHhhcCcc-cHHHHHHHhhcc--C-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665554433332 123333333211 0 011112345677778888888888888
Q ss_pred HHhhhhhhhhHHHH--HHHHhhhhhhHHHHHHHHh
Q 001390 347 VLDKKTNELQFSRT--MYARAASKLSEVESQIEEL 379 (1088)
Q Consensus 347 ~L~~k~~ELq~sr~--~~a~t~skL~~~e~q~~~~ 379 (1088)
.++..+.+|+.... -|+.....+..++.++...
T Consensus 918 ~~~~~~~~l~~l~~~~~~a~l~~e~e~~~a~l~~~ 952 (1111)
T PF13514_consen 918 ERAELEQELEALEGDDDAAELEQEREEAEAELEEL 952 (1111)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence 88888887775432 3555555666666666653
No 166
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=86.49 E-value=1.2e+02 Score=39.94 Aligned_cols=120 Identities=19% Similarity=0.214 Sum_probs=67.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHH----
Q 001390 81 ITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILE---- 156 (1088)
Q Consensus 81 v~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE---- 156 (1088)
|+|----+..-.+--+.+++..++....++-++.++..|.++...- +. .++.++|++.+.-||
T Consensus 162 VaGtrvYeerreeSlkim~ET~qK~ekI~ell~yieerLreLEeEK-------ee------L~~Yqkldk~rr~lEYtiY 228 (1200)
T KOG0964|consen 162 VAGTRVYEERREESLKIMEETKQKREKINELLKYIEERLRELEEEK-------EE------LEKYQKLDKERRSLEYTIY 228 (1200)
T ss_pred hcccchhHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhH-------HH------HHHHHHHHHhHhhhhhhhh
Confidence 3443333333444446688888888888888888887777766532 21 233667777776665
Q ss_pred -HHHHHHHHHHHHhhhh-------hhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHH
Q 001390 157 -EKLAETSKRLAKLGVE-------NTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEK 213 (1088)
Q Consensus 157 -~kL~El~k~L~k~~aE-------n~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EK 213 (1088)
..+-|+..+|.+++.. +..+.-+|+.++..+..++.++..+++.+..|....+.++.
T Consensus 229 drEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a 293 (1200)
T KOG0964|consen 229 DRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKA 293 (1200)
T ss_pred hhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555554433 33344445555555555555555555555555444444333
No 167
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.46 E-value=1.1e+02 Score=39.11 Aligned_cols=162 Identities=21% Similarity=0.327 Sum_probs=99.8
Q ss_pred HHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHH
Q 001390 187 IEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQR 266 (1088)
Q Consensus 187 i~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqR 266 (1088)
+..+.......++-.+++-..+....+.+..+..++-.++..|.-+...-.+.+...+-+......-.+++..|+.|-.|
T Consensus 442 V~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~r 521 (716)
T KOG4593|consen 442 VQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEENDR 521 (716)
T ss_pred HHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33334444434444445555556666666677777777777777777777778888888888889999999999999999
Q ss_pred HHHHHHhcCCChHHHhhhhHHHHhhcCCChhhhhccCCCCCCCcccccCCCCCCCCCc-chhhhHHHHHHHhHHHHHHHH
Q 001390 267 LRVLVRKRLPGPAALAKMKNEVEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPS-KRINFLTEQLRAMEEENNSLK 345 (1088)
Q Consensus 267 Lr~l~rk~lpgpaa~a~mk~eve~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~rl~~~eeEnk~lk 345 (1088)
||+++-.++ +..|+.+.+.|-.+ ...+|. +.-...-.++..+..|+..||
T Consensus 522 Lr~~~e~~~---------------l~gd~~~~~~rVl~--------------~~~npt~~~~~~~k~~~e~LqaE~~~lk 572 (716)
T KOG4593|consen 522 LRAQLERRL---------------LQGDYEENITRVLH--------------MSTNPTSKARQIKKNRLEELQAELERLK 572 (716)
T ss_pred HHHHHHHHH---------------Hhhhhhhhccceee--------------ecCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 996664443 33455444443111 111222 333445678899999999999
Q ss_pred HHHhh---hhhhhhH----HHHHHHHhhhhhhHHHHHHHH
Q 001390 346 EVLDK---KTNELQF----SRTMYARAASKLSEVESQIEE 378 (1088)
Q Consensus 346 e~L~~---k~~ELq~----sr~~~a~t~skL~~~e~q~~~ 378 (1088)
+.|.. -+...+- ...||+- --.+-+++.++..
T Consensus 573 ~~l~~le~~~~~~~d~~i~~~s~~~~-~~ev~qlk~ev~s 611 (716)
T KOG4593|consen 573 ERLTALEGDKMQFRDGEIAVHSLLAF-SKEVAQLKKEVES 611 (716)
T ss_pred HHHHHHhccCCcccchhhHHhhhhcc-hHHHHHHHHHHHH
Confidence 95543 3332222 2333331 1256667777663
No 168
>PF13514 AAA_27: AAA domain
Probab=86.44 E-value=1.3e+02 Score=40.28 Aligned_cols=37 Identities=32% Similarity=0.305 Sum_probs=19.1
Q ss_pred HhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHH
Q 001390 197 AEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRN 233 (1088)
Q Consensus 197 ~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~ 233 (1088)
+..++..+..+++.++.++..+..++-.+..+++-+.
T Consensus 894 l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~ 930 (1111)
T PF13514_consen 894 LEAELEELEEELEELEEELEELQEERAELEQELEALE 930 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455555555555555555555555555555443
No 169
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=86.42 E-value=93 Score=38.42 Aligned_cols=254 Identities=18% Similarity=0.183 Sum_probs=139.8
Q ss_pred hhhhHH----HHHHHHHHHHHHHHHHhh----hhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHH-HHHhHHHHHH
Q 001390 81 ITGREK----AEAEVVSLKQELDAALQQ----RDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAV-MKASMEFEQS 151 (1088)
Q Consensus 81 v~GweK----aEaE~~slKkqLe~~~qq----~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~-~kks~E~Ek~ 151 (1088)
=.-|.+ .+..+.+++.+.+..... ...+-++.--++.|+-.+.+.+ ++.+...+-+ ....+-|+.-
T Consensus 228 E~rW~~lq~l~Ee~l~al~gq~ev~~~~~~~E~~~l~eq~~~ld~AV~~Ltk~v-----~~~q~sL~kvl~aE~kaR~~k 302 (531)
T PF15450_consen 228 ESRWQKLQELTEERLRALQGQQEVGLGGIQSEESKLLEQCRKLDEAVAQLTKFV-----QQNQKSLNKVLNAEQKARDAK 302 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHHH-----HHHHHHHHHHHhhHHHHHHHH
Confidence 356766 678888999988854433 3445667777788877777777 4444444433 3344444444
Q ss_pred HHHHHHHHHHHHHHHHH-hhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHH
Q 001390 152 LMILEEKLAETSKRLAK-LGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELE 230 (1088)
Q Consensus 152 ~~eLE~kL~El~k~L~k-~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELE 230 (1088)
-.-++.++.++...|.. +.+-+.+...+.++-...+.-|++.-..++.-+..+...|-.+...+..|...|..+.+.|+
T Consensus 303 ~~~e~sk~eeL~~~L~~~lea~q~agkla~Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~ 382 (531)
T PF15450_consen 303 EKLEESKAEELATKLQENLEAMQLAGKLAQQETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLN 382 (531)
T ss_pred hHHHHhhHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 44455666666665421 22222223334444455566666555566667777888888888888999999999999888
Q ss_pred HHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhhHHHHhhcCCChhhhhccCCCCCCCc
Q 001390 231 IRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRESPETRRKRLNSSPLGS 310 (1088)
Q Consensus 231 Ir~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk~lpgpaa~a~mk~eve~~~~~~~~~r~~~~~~~~~~~ 310 (1088)
.|-.+-.. +.+..+.+.-.-+-+|+..+-+.+ --++.=|++|+++..+.-.+--
T Consensus 383 ~rL~e~~~-------------e~~~~~r~~lekl~~~q~e~~~~l------~~v~eKVd~LpqqI~~vs~Kc~------- 436 (531)
T PF15450_consen 383 LRLSEAKN-------------EWESDERKSLEKLDQWQNEMEKHL------KEVQEKVDSLPQQIEEVSDKCD------- 436 (531)
T ss_pred HHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhHHHHHHHHHHH-------
Confidence 87755422 122222233333444555544433 2344445555554222221100
Q ss_pred ccccCCCCCCCCCcchhhhHHHHHHHhHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhHHHHHHH
Q 001390 311 MVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQIE 377 (1088)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~l~~rl~~~eeEnk~lke~L~~k~~ELq~sr~~~a~t~skL~~~e~q~~ 377 (1088)
.+.+.++-.-++ + -.+-+-+..++|+.|+...+-+|+.+--- .+.|+-.+++++.
T Consensus 437 ~~Ksd~d~kIdt-----E-----~k~R~~eV~~vRqELa~lLssvQ~~~e~~--~~rkiaeiqg~l~ 491 (531)
T PF15450_consen 437 LHKSDSDTKIDT-----E-----GKAREREVGAVRQELATLLSSVQLLKEDN--PGRKIAEIQGKLA 491 (531)
T ss_pred HHHhhhhhhccH-----H-----HHHHHHHHHHHHHHHHHHHHHHHHhcCCC--hhhhHHHHHHHHH
Confidence 001111111111 1 12234456789999999888888765321 2235555555554
No 170
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=86.32 E-value=49 Score=40.80 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 001390 146 MEFEQSLMILEEKLAETSKRLAKL 169 (1088)
Q Consensus 146 ~E~Ek~~~eLE~kL~El~k~L~k~ 169 (1088)
.++...+.+++.++.+...+|..-
T Consensus 58 eE~~~~R~Ele~el~~~e~rL~qr 81 (514)
T TIGR03319 58 EEVHKLRAELERELKERRNELQRL 81 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666655555554433
No 171
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=86.24 E-value=1.3e+02 Score=39.88 Aligned_cols=38 Identities=21% Similarity=0.307 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHH
Q 001390 88 EAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQ 125 (1088)
Q Consensus 88 EaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQ 125 (1088)
++-+..|.+++++-......++..+..|+.-++++.+.
T Consensus 183 e~kir~LrqElEEK~enll~lr~eLddleae~~klrqe 220 (1195)
T KOG4643|consen 183 EKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQE 220 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566655555555666655555555555443
No 172
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=86.21 E-value=0.22 Score=63.89 Aligned_cols=153 Identities=20% Similarity=0.196 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 001390 111 RLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDL 190 (1088)
Q Consensus 111 rvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eL 190 (1088)
++..|+.+-|++.++| ..-+.-.+....+...|++.+..|...+.++...|.+..+.+..|.+.-..=+..+.++
T Consensus 315 ~~EelEeaKKkL~~~L-----~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~ 389 (859)
T PF01576_consen 315 RTEELEEAKKKLERKL-----QELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEW 389 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444555666666666 33333445556667777777777777777777777777776666664433333444444
Q ss_pred HhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001390 191 GKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLR 268 (1088)
Q Consensus 191 kee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr 268 (1088)
+.....+..+...++.....++.++..|+.++..+...++.+..+...-...++....+.-+..+.+..|+...++|.
T Consensus 390 k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE 467 (859)
T PF01576_consen 390 KAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLE 467 (859)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHH
Confidence 444443333333333333333334444444333333333333333333333333333333333444444444444333
No 173
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=86.21 E-value=54 Score=35.45 Aligned_cols=131 Identities=24% Similarity=0.225 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhh
Q 001390 116 DAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRT 195 (1088)
Q Consensus 116 d~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s 195 (1088)
..+-++..+-+..++.+-+....++......++.+.+.+++..+.+-..+|...+ +-|..|+..+..-.+...
T Consensus 30 ~~A~~~A~~i~~~A~~eAe~~~ke~~~eakee~~~~r~~~E~E~~~~~~el~~~E-------~rl~~rE~~L~~~~~~L~ 102 (201)
T PF12072_consen 30 EQAEKEAEQILEEAEREAEAIKKEAELEAKEEAQKLRQELERELKERRKELQRLE-------KRLQQREEQLDRRLEQLE 102 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 3344444444555566666777777777778888888888888877766665544 345566666666666555
Q ss_pred hHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHH
Q 001390 196 QAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVK 255 (1088)
Q Consensus 196 ~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvK 255 (1088)
.-+..+......|......+...+.++.-+..+..-.- ...+-=+.+.|....++.+.
T Consensus 103 ~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~L--e~iAglT~eEAk~~Ll~~le 160 (201)
T PF12072_consen 103 KREEELEKKEEELEQRKEELEEREEELEELIEEQQQEL--EEIAGLTAEEAKEILLEKLE 160 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCHHHHHHHHHHHHH
Confidence 55555555555555555444444444443333322111 12333456777777765543
No 174
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=86.14 E-value=0.22 Score=62.55 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHH
Q 001390 815 QLQESQKIVSNSQNELDILKKSKEVIEDQVKL 846 (1088)
Q Consensus 815 QLeElE~kLeELksELesLeES~selEeQLk~ 846 (1088)
++..+..++..|+.++..+...+..++.+|..
T Consensus 504 ~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 504 ELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555555555556666666655543
No 175
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=85.86 E-value=24 Score=36.14 Aligned_cols=80 Identities=15% Similarity=0.089 Sum_probs=66.4
Q ss_pred hHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001390 791 VEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQ 870 (1088)
Q Consensus 791 LesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqe 870 (1088)
++-.++.+.++|+.++..-..+...+.++..-.+-|+.+|++|...+..+++=+....+.+..+..+-.+.+.+..+++.
T Consensus 4 LeP~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLqlhcqeke~eaqrq~~ 83 (134)
T PF15233_consen 4 LEPQIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRILQLHCQEKESEAQRQQT 83 (134)
T ss_pred ccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44567788889998888778888999999999999999999999999999998888888888887777776666665543
No 176
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=85.53 E-value=77 Score=36.63 Aligned_cols=50 Identities=14% Similarity=0.190 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHH
Q 001390 85 EKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQE 134 (1088)
Q Consensus 85 eKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqE 134 (1088)
..+.+++.++...-++...+...+.+++..+....+++-.++..+|++..
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ 79 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRD 79 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555554444
No 177
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=85.46 E-value=12 Score=46.48 Aligned_cols=107 Identities=16% Similarity=0.101 Sum_probs=82.2
Q ss_pred hhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001390 789 INVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEA 868 (1088)
Q Consensus 789 EqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~ql 868 (1088)
..++.....+++..++++-+...+..|..+--.+|.+|...++.-...+-..|+.|...--....|+++.-.+-+|+-++
T Consensus 107 ~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeL 186 (861)
T KOG1899|consen 107 PEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSEL 186 (861)
T ss_pred hHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHh
Confidence 34666777777777777777777888887777888888888888888888888888888778888999999999999999
Q ss_pred HHHHhhHHHHH---HHhhhhhHHHHHHHHH
Q 001390 869 CQKLSSLEVEL---EDKSNCCEELEATCLE 895 (1088)
Q Consensus 869 qeKVsSLE~EL---E~er~~lEEl~aKc~e 895 (1088)
.-|..++++|. +++-+..+++...+.+
T Consensus 187 KLkltalEkeq~e~E~K~R~se~l~qevn~ 216 (861)
T KOG1899|consen 187 KLKLTALEKEQNETEKKLRLSENLMQEVNQ 216 (861)
T ss_pred HHHHHHHHHHhhhHHHHHHhHHHHHHHHHH
Confidence 99998888655 4444445555444443
No 178
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=85.37 E-value=24 Score=36.12 Aligned_cols=15 Identities=33% Similarity=0.328 Sum_probs=6.5
Q ss_pred hHHHHHHHhhhhhHH
Q 001390 874 SLEVELEDKSNCCEE 888 (1088)
Q Consensus 874 SLE~ELE~er~~lEE 888 (1088)
.+..|+..+...++.
T Consensus 130 q~~~e~rkke~E~~k 144 (151)
T PF11559_consen 130 QYEHELRKKEREIEK 144 (151)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 179
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=85.32 E-value=1.7e+02 Score=40.40 Aligned_cols=10 Identities=10% Similarity=0.069 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 001390 259 KLESECQRLR 268 (1088)
Q Consensus 259 kLEaECqRLr 268 (1088)
..+++++.+.
T Consensus 973 ~~~~~~~~~~ 982 (1353)
T TIGR02680 973 DERAEARDHA 982 (1353)
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 180
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=85.09 E-value=1.1e+02 Score=38.19 Aligned_cols=123 Identities=27% Similarity=0.299 Sum_probs=96.0
Q ss_pred hhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHH----
Q 001390 206 VRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAAL---- 281 (1088)
Q Consensus 206 ~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk~lpgpaa~---- 281 (1088)
.+|.++...+.+.-|++..+..++.-..+.-++....+ ...|+.+..|+.+.||--|-|..+
T Consensus 262 ~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L--------------~~ve~Rl~~L~~l~RKY~~~~~~l~~~~ 327 (557)
T COG0497 262 GKLSELAELLEEALYELEEASEELRAYLDELEFDPNRL--------------EEVEERLFALKSLARKYGVTIEDLLEYL 327 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH--------------HHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 46667777777778888888888887777777776653 677888999999999988876555
Q ss_pred hhhhHHHHhhcCCChhhhhccCCCCCCCcccccCCCCCCCCCcchhhhHHHHHHHhHHHHHHHHHHHhhhhhhhhHHHHH
Q 001390 282 AKMKNEVEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTM 361 (1088)
Q Consensus 282 a~mk~eve~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eeEnk~lke~L~~k~~ELq~sr~~ 361 (1088)
.+|+.|+..|-.. -+.+..++.+-+.|++-+-+....|-..|-.
T Consensus 328 ~~~~~el~~L~~~------------------------------------~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~ 371 (557)
T COG0497 328 DKIKEELAQLDNS------------------------------------EESLEALEKEVKKLKAELLEAAEALSAIRKK 371 (557)
T ss_pred HHHHHHHHHhhhh------------------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777764321 2567788999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHhh
Q 001390 362 YARAASKLSEVESQIEELS 380 (1088)
Q Consensus 362 ~a~t~skL~~~e~q~~~~s 380 (1088)
+|..-.+ .|..+|+.|.
T Consensus 372 ~A~~L~~--~v~~eL~~L~ 388 (557)
T COG0497 372 AAKELEK--EVTAELKALA 388 (557)
T ss_pred HHHHHHH--HHHHHHHhcC
Confidence 9997765 5667777653
No 181
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=85.03 E-value=33 Score=37.14 Aligned_cols=104 Identities=21% Similarity=0.257 Sum_probs=85.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001390 802 LVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELED 881 (1088)
Q Consensus 802 Lq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~ 881 (1088)
|.-=+.-++.+..++.|.+.-+.+....|...+................+..|..-+...+..+.....-......+|..
T Consensus 62 L~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~e 141 (188)
T PF05335_consen 62 LAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAE 141 (188)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344456667777788888888888888888888888888888888888888888888888888888889999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhc
Q 001390 882 KSNCCEELEATCLELQLQLESVTK 905 (1088)
Q Consensus 882 er~~lEEl~aKc~eLeeQLEr~e~ 905 (1088)
+...++....|+..|..+|.....
T Consensus 142 K~qLLeaAk~Rve~L~~QL~~Ar~ 165 (188)
T PF05335_consen 142 KTQLLEAAKRRVEELQRQLQAARA 165 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999986553
No 182
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=84.90 E-value=1.6e+02 Score=39.71 Aligned_cols=86 Identities=19% Similarity=0.237 Sum_probs=49.3
Q ss_pred HHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHH
Q 001390 187 IEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQR 266 (1088)
Q Consensus 187 i~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqR 266 (1088)
+.++.++++.++.-....-++|..+++....||.+.... ..+-....+.+++|..+-++..++...|..-.++
T Consensus 1600 l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qn-------s~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~ 1672 (1758)
T KOG0994|consen 1600 LAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQN-------SAEAKQAEKTAGSAKEQALSAEQGLEILQKYYEL 1672 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444333222 2344556667777887878888777777788888
Q ss_pred HHHHHHhcCCChH
Q 001390 267 LRVLVRKRLPGPA 279 (1088)
Q Consensus 267 Lr~l~rk~lpgpa 279 (1088)
-..++.||.-|..
T Consensus 1673 ~~~l~~~r~~g~~ 1685 (1758)
T KOG0994|consen 1673 VDRLLEKRMEGSQ 1685 (1758)
T ss_pred HHHHHHHHhhcch
Confidence 8888888776643
No 183
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.81 E-value=83 Score=38.23 Aligned_cols=166 Identities=19% Similarity=0.212 Sum_probs=83.2
Q ss_pred hHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHH
Q 001390 68 DLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASME 147 (1088)
Q Consensus 68 ~lvkqh~kvaeeav~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E 147 (1088)
+.-|||.-.-.++=+|--+++.+...+-+.+.-..+ +=+-+..=.+-|-++|.+| + .....+..-+++
T Consensus 248 ae~kqh~v~~~ales~~sq~~e~~selE~llklker----l~e~l~dgeayLaKL~~~l-----~---~~~~~~~~ltqq 315 (521)
T KOG1937|consen 248 AEYKQHLVEYKALESKRSQFEEQNSELEKLLKLKER----LIEALDDGEAYLAKLMGKL-----A---ELNKQMEELTQQ 315 (521)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHH----HHHhcCChHhHHHHHHHHH-----H---HHHHHHHHHHHH
Confidence 345777755555556666655555544333332222 2222233344555666555 1 112223344689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHH
Q 001390 148 FEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGK 227 (1088)
Q Consensus 148 ~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqk 227 (1088)
|++.+.-|..+...+...+...+.+-.. +.++ ...+.++..+-.+.+.-+-.+.-|+.++..+-.
T Consensus 316 wed~R~pll~kkl~Lr~~l~~~e~e~~e-----------~~~I----qeleqdL~a~~eei~~~eel~~~Lrsele~lp~ 380 (521)
T KOG1937|consen 316 WEDTRQPLLQKKLQLREELKNLETEDEE-----------IRRI----QELEQDLEAVDEEIESNEELAEKLRSELEKLPD 380 (521)
T ss_pred HHHHhhhHHHHHHHHHHHHhcccchHHH-----------HHHH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCc
Confidence 9999999998888887777666655211 1111 112222222222222222333333333332222
Q ss_pred HHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001390 228 ELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVR 272 (1088)
Q Consensus 228 ELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~r 272 (1088)
... .+.|.+ ...|.++.|-|+++++.+.-...|
T Consensus 381 dv~----rk~ytq--------rikEi~gniRKq~~DI~Kil~etr 413 (521)
T KOG1937|consen 381 DVQ----RKVYTQ--------RIKEIDGNIRKQEQDIVKILEETR 413 (521)
T ss_pred hhH----HHHHHH--------HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 111 333333 346788888888888887766554
No 184
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=84.74 E-value=8.8 Score=44.17 Aligned_cols=89 Identities=22% Similarity=0.272 Sum_probs=81.2
Q ss_pred HHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHH
Q 001390 186 LIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQ 265 (1088)
Q Consensus 186 ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECq 265 (1088)
-+.+|+.+...++..+...|.-.+-+.-|-+.|.|+|..+...|+-+.+...-..+.+..-.+.+......+..|..|+.
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~ 157 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELD 157 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999988888888888888899999999
Q ss_pred HHHHHHHhc
Q 001390 266 RLRVLVRKR 274 (1088)
Q Consensus 266 RLr~l~rk~ 274 (1088)
.||..|+.+
T Consensus 158 ~Lre~L~~r 166 (302)
T PF09738_consen 158 ELREQLKQR 166 (302)
T ss_pred HHHHHHHHH
Confidence 999887654
No 185
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=84.71 E-value=45 Score=33.23 Aligned_cols=32 Identities=19% Similarity=-0.012 Sum_probs=11.8
Q ss_pred hhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHH
Q 001390 788 FINVEAGNKVRQECLVSAIDKSNSLMSQLQES 819 (1088)
Q Consensus 788 LEqLesEK~eLE~rLq~~qekLE~lksQLeEl 819 (1088)
-+.+.+-...+++++...+..+|..+....++
T Consensus 4 ~~~l~as~~el~n~La~Le~slE~~K~S~~eL 35 (107)
T PF09304_consen 4 KEALEASQNELQNRLASLERSLEDEKTSQGEL 35 (107)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34455555555666655555555555444443
No 186
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=84.43 E-value=1.2e+02 Score=37.91 Aligned_cols=23 Identities=9% Similarity=0.237 Sum_probs=14.4
Q ss_pred hchhHhhHhHhhhHHHHHHHHhh
Q 001390 40 TDKAELENDVKNLNDKLFSALAE 62 (1088)
Q Consensus 40 ~~~~~~~~~~k~l~ekLs~a~~~ 62 (1088)
.+.++++.....|.|+++++-..
T Consensus 235 ~~ie~l~~~n~~l~e~i~e~ek~ 257 (581)
T KOG0995|consen 235 NEIEDLKKTNRELEEMINEREKD 257 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 34456667777788888744333
No 187
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=84.23 E-value=36 Score=40.91 Aligned_cols=38 Identities=29% Similarity=0.245 Sum_probs=20.3
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHhhccCchhhhcccccccc
Q 001390 925 EIATASEKLAECQETILNLGKQLKALASPREAALFDKVIHT 965 (1088)
Q Consensus 925 EIaaAAeKLAECQETI~~LGKQLKaLa~~~e~~~~d~~~~~ 965 (1088)
+|..|-..|++=+..+..+-.+|.-. .=.++||=+|..
T Consensus 292 ~l~~~~~~l~~~~~~l~~a~~~l~~~---~I~AP~dG~V~~ 329 (457)
T TIGR01000 292 EITDLNQKLLELESKIKSLKEDSQKG---VIKAPEDGVLHL 329 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC---EEECCCCeEEEe
Confidence 44455555555555555555555321 224677877764
No 188
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=83.79 E-value=61 Score=34.06 Aligned_cols=88 Identities=19% Similarity=0.117 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHH
Q 001390 816 LQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLE 895 (1088)
Q Consensus 816 LeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~e 895 (1088)
...+..+|++-..+|..++......=..+.+..+.+..+...+..++.++......+..++.++...+..+..+.....+
T Consensus 51 n~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~ 130 (177)
T PF13870_consen 51 NQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKK 130 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444554444444555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHhh
Q 001390 896 LQLQLESV 903 (1088)
Q Consensus 896 LeeQLEr~ 903 (1088)
+..+..-+
T Consensus 131 l~~~~~~~ 138 (177)
T PF13870_consen 131 LRQQGGLL 138 (177)
T ss_pred HHHhcCCC
Confidence 55554433
No 189
>PRK10869 recombination and repair protein; Provisional
Probab=83.39 E-value=1.3e+02 Score=37.50 Aligned_cols=122 Identities=18% Similarity=0.227 Sum_probs=87.6
Q ss_pred hcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhh-
Q 001390 207 RLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMK- 285 (1088)
Q Consensus 207 rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk~lpgpaa~a~mk- 285 (1088)
.++++-..+.++.|.+..+..+|.-..+.-++.... ...+|+....++.+.||-=|.+..+-..+
T Consensus 262 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~--------------l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~ 327 (553)
T PRK10869 262 KLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNR--------------LAELEQRLSKQISLARKHHVSPEELPQHHQ 327 (553)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHH--------------HHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 445555566666777777777665555544554433 46778888999999999988888775444
Q ss_pred ---HHHHhhcCCChhhhhccCCCCCCCcccccCCCCCCCCCcchhhhHHHHHHHhHHHHHHHHHHHhhhhhhhhHHHHHH
Q 001390 286 ---NEVEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMY 362 (1088)
Q Consensus 286 ---~eve~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eeEnk~lke~L~~k~~ELq~sr~~~ 362 (1088)
.|++.+. ..-+++..++.+-..++..|.+...+|...|...
T Consensus 328 ~l~~eL~~L~------------------------------------~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~a 371 (553)
T PRK10869 328 QLLEEQQQLD------------------------------------DQEDDLETLALAVEKHHQQALETAQKLHQSRQRY 371 (553)
T ss_pred HHHHHHHHhh------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444322 1236778888889999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHhh
Q 001390 363 ARAASKLSEVESQIEELS 380 (1088)
Q Consensus 363 a~t~skL~~~e~q~~~~s 380 (1088)
|..-.+ .|..+|..|.
T Consensus 372 A~~l~~--~v~~~L~~L~ 387 (553)
T PRK10869 372 AKELAQ--LITESMHELS 387 (553)
T ss_pred HHHHHH--HHHHHHHHcC
Confidence 987754 6777888764
No 190
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=83.32 E-value=74 Score=34.63 Aligned_cols=87 Identities=18% Similarity=0.220 Sum_probs=43.8
Q ss_pred HhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHH----HHH
Q 001390 191 GKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESE----CQR 266 (1088)
Q Consensus 191 kee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaE----CqR 266 (1088)
..++....-+.+.|..+++.+++|...|...+...-.++.-....+++- ..+|+..|.+. =..
T Consensus 99 ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~l-------------LEkKl~~l~~~lE~keaq 165 (201)
T PF13851_consen 99 EKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLL-------------LEKKLQALSEQLEKKEAQ 165 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHH
Confidence 3334444444444445555555554444444444333333333333332 22333333332 233
Q ss_pred HHHHHHhcCCChHHHhhhhHHHHh
Q 001390 267 LRVLVRKRLPGPAALAKMKNEVEI 290 (1088)
Q Consensus 267 Lr~l~rk~lpgpaa~a~mk~eve~ 290 (1088)
|...+...-|.|+|+..+..-|+.
T Consensus 166 L~evl~~~nldp~~~~~v~~~l~~ 189 (201)
T PF13851_consen 166 LNEVLAAANLDPAALSQVSKKLED 189 (201)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHH
Confidence 445566667899999888877775
No 191
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=83.20 E-value=89 Score=38.92 Aligned_cols=163 Identities=16% Similarity=0.207 Sum_probs=123.4
Q ss_pred hhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhh---hHHHHHHHHHH
Q 001390 787 EFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINE---DLDTQLKVARV 863 (1088)
Q Consensus 787 eLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le---~LesqL~elea 863 (1088)
+++..+.....+..++..+-+.++.=-.-....+..+..+...+.-+.+.+..+..++......|. .--.....+..
T Consensus 272 ~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~ 351 (560)
T PF06160_consen 272 ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEK 351 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 356667777777777777777777767777788888999999999999999999999999999882 22335566778
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhcCCCCcccchhhhhhhhhhHhHHHHHhhHHHHHHHHHHH
Q 001390 864 DLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTKSGIPTDELKQDEKQIQTDWEIATASEKLAECQETILNL 943 (1088)
Q Consensus 864 El~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~~~~~~~~~~~e~~~~kqe~EIaaAAeKLAECQETI~~L 943 (1088)
++..+..+...+...+.....-...+...+.++..+|+.++..- ....+.-..++. +=..|-++|..-+..|...
T Consensus 352 ~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q---~~~~~~l~~L~~--dE~~Ar~~l~~~~~~l~~i 426 (560)
T PF06160_consen 352 QLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQ---EEINESLQSLRK--DEKEAREKLQKLKQKLREI 426 (560)
T ss_pred HHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999999999877520 001111112333 2346788899999999999
Q ss_pred HHHHhhccCch
Q 001390 944 GKQLKALASPR 954 (1088)
Q Consensus 944 GKQLKaLa~~~ 954 (1088)
-+.+.-..=|-
T Consensus 427 kR~lek~nLPG 437 (560)
T PF06160_consen 427 KRRLEKSNLPG 437 (560)
T ss_pred HHHHHHcCCCC
Confidence 99998877664
No 192
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=83.05 E-value=90 Score=35.41 Aligned_cols=117 Identities=29% Similarity=0.310 Sum_probs=61.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHH
Q 001390 144 ASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVR 223 (1088)
Q Consensus 144 ks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~ 223 (1088)
-+.|+|. +|+.+|..++.++.++.++|..|.--+ +.+.+.+-.+..++-..+.+|.-.|.-+-...-.|+--|+
T Consensus 42 gSrE~Ea---elesqL~q~etrnrdl~t~nqrl~~E~---e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiR 115 (333)
T KOG1853|consen 42 GSREIEA---ELESQLDQLETRNRDLETRNQRLTTEQ---ERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIR 115 (333)
T ss_pred hhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554 788999999999888888887666111 1233333333333333344333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHhHH----hHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001390 224 VLGKELEIRNEEREFNRR----TADESHKQHLESVKKIAKLESECQRLRVL 270 (1088)
Q Consensus 224 vlqkELEIr~eEre~s~k----saEaA~KQhlEsvKKIakLEaECqRLr~l 270 (1088)
+|+-+|.-.+-+.+ +++.-...+-..+.++|-||.|+-....+
T Consensus 116 ----eLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~l 162 (333)
T KOG1853|consen 116 ----ELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVL 162 (333)
T ss_pred ----HHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34444443333333 34444455566677778887776554443
No 193
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=82.96 E-value=50 Score=35.55 Aligned_cols=139 Identities=17% Similarity=0.178 Sum_probs=87.9
Q ss_pred chhhhhhHhhhhHHHHHHHHHHHhHHHHH-----------HHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 001390 785 GSEFINVEAGNKVRQECLVSAIDKSNSLM-----------SQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINED 853 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qekLE~lk-----------sQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~ 853 (1088)
-+++.+|+-++...+..+..+......-+ ..-.++...-.++..+|.+++..-..+|.||+.|..+...
T Consensus 10 QeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ 89 (178)
T PF14073_consen 10 QEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEYMRKMVES 89 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666665555553332221111 1112222345689999999999999999999999988866
Q ss_pred HHHHHHH--------------HHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhcCCCCcccchhhhhh
Q 001390 854 LDTQLKV--------------ARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTKSGIPTDELKQDEKQ 919 (1088)
Q Consensus 854 LesqL~e--------------leaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~~~~~~~~~~~e~~~ 919 (1088)
.+.+-+. -..++....+|+..|+.|--.......-.+.||.+|++.|..=+.. -..+.+..-+
T Consensus 90 ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehq---RKlvQdkAaq 166 (178)
T PF14073_consen 90 AEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQ---RKLVQDKAAQ 166 (178)
T ss_pred HHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 5532211 1334556668899999999999888889999999999999853321 1122222345
Q ss_pred hhhhHhH
Q 001390 920 IQTDWEI 926 (1088)
Q Consensus 920 ~kqe~EI 926 (1088)
++++.|+
T Consensus 167 LQt~lE~ 173 (178)
T PF14073_consen 167 LQTGLET 173 (178)
T ss_pred HHhhHHH
Confidence 6666554
No 194
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=82.76 E-value=75 Score=34.33 Aligned_cols=179 Identities=15% Similarity=0.233 Sum_probs=87.1
Q ss_pred hHHHHHHHHhhcccchhHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhH
Q 001390 52 LNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVRE 131 (1088)
Q Consensus 52 l~ekLs~a~~~~~~kd~lvkqh~kvaeeav~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rE 131 (1088)
+.-.+..++..+-.-..++.|+..=+++++.-+.++-+.+.+.++.+ +++...++..+..+......+.+.
T Consensus 10 ~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~l---e~~~~~~~~~~~~~~~~A~~Al~~------ 80 (221)
T PF04012_consen 10 VKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRL---ERKLDEAEEEAEKWEKQAELALAA------ 80 (221)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHc------
Confidence 34455555666655667788888777777766666655555544433 333334444444444444444321
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchH
Q 001390 132 EQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDST 211 (1088)
Q Consensus 132 EqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~ 211 (1088)
..+.....++.. ...++.....|+..+..+...+.+++ ..+..+..++..+
T Consensus 81 g~edLAr~al~~-k~~~e~~~~~l~~~~~~~~~~~~~l~----------------------------~~l~~l~~kl~e~ 131 (221)
T PF04012_consen 81 GREDLAREALQR-KADLEEQAERLEQQLDQAEAQVEKLK----------------------------EQLEELEAKLEEL 131 (221)
T ss_pred CCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHH
Confidence 122333333333 33333333333333333333222222 2233333444444
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001390 212 EKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLV 271 (1088)
Q Consensus 212 EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~ 271 (1088)
..+...|+....++.....+-.-...++ ...+.........+|..+|++..-...+.
T Consensus 132 k~k~~~l~ar~~~a~a~~~~~~~~~~~~---~~~a~~~~er~e~ki~~~ea~a~a~~el~ 188 (221)
T PF04012_consen 132 KSKREELKARENAAKAQKKVNEALASFS---VSSAMDSFERMEEKIEEMEARAEASAELA 188 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCC---ccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444444444444433333333333 45566667777777777777766655543
No 195
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=82.75 E-value=1.8e+02 Score=38.80 Aligned_cols=161 Identities=22% Similarity=0.198 Sum_probs=81.7
Q ss_pred hhhHHHHHHHHhhcccchhHHHHhH------HHHH------HHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHH
Q 001390 50 KNLNDKLFSALAECNAKDDLVKKHA------KMAQ------EAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDA 117 (1088)
Q Consensus 50 k~l~ekLs~a~~~~~~kd~lvkqh~------kvae------eav~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~ 117 (1088)
..-..+|-....-|.|+-=||=|-+ |.+. |.|+|=. .+|..|+........+++...|.-.
T Consensus 109 eeY~~eLekinIlVkARNFLVFQGdVE~IA~k~PkElt~LFEEISgSi-------ElK~EYeelK~E~~kAE~~t~~~~~ 181 (1141)
T KOG0018|consen 109 EEYLEELEKINILVKARNFLVFQGDVEKIAGKNPKELTALFEEISGSI-------ELKPEYEELKYEMAKAEETTTGNYK 181 (1141)
T ss_pred HHHHHHHhhcceeeeeeeEEEecChHHHHhccCHHHHHHHHHHHhhhh-------hhhHHHHHHHHHHHHHHHHHhhHhh
Confidence 4445555555566666655555522 2222 3444433 3455555555555666666666666
Q ss_pred HHHHHHHHhhhhhHHHH-----HHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 001390 118 ALKECMDQLHFVREEQE-----QRIHDAVMKASMEFEQ-SLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLG 191 (1088)
Q Consensus 118 aLKecmkQLr~~rEEqE-----qki~da~~kks~E~Ek-~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLk 191 (1088)
..|..+-.++.++++.+ ++..+-..+...+|-= ..--+|+.+.++..+|....++...|...+..+++.+...+
T Consensus 182 kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k 261 (1141)
T KOG0018|consen 182 KKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRK 261 (1141)
T ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHH
Confidence 66666666655553222 2333333322222210 01134566666666666666666666666666666666666
Q ss_pred hhhhhHhhhHHHHHhhcchHHHHHHH
Q 001390 192 KQRTQAEADSNALMVRLDSTEKENAS 217 (1088)
Q Consensus 192 ee~s~~eaei~~Lq~rLE~~EKEn~s 217 (1088)
++...+..++..+-..+...+..+++
T Consensus 262 ~e~~ki~re~~~~Dk~i~~ke~~l~e 287 (1141)
T KOG0018|consen 262 KERGKIRRELQKVDKKISEKEEKLAE 287 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55554444444444444444444444
No 196
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=82.74 E-value=1.2e+02 Score=39.06 Aligned_cols=98 Identities=21% Similarity=0.176 Sum_probs=48.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-----------HHHHHHH
Q 001390 804 SAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDL-----------NEACQKL 872 (1088)
Q Consensus 804 ~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl-----------~qlqeKV 872 (1088)
.++..+..++.+.+.--.+|.+++.+++.+++.-..+.+.++...+.-+.+..++..+-..+ ......+
T Consensus 562 ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL 641 (717)
T PF10168_consen 562 EIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKEL 641 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 33333333333333333444444444444444444444444444444444444443321111 3334445
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001390 873 SSLEVELEDKSNCCEELEATCLELQLQLE 901 (1088)
Q Consensus 873 sSLE~ELE~er~~lEEl~aKc~eLeeQLE 901 (1088)
..+..+++..+..++.+..+....+.+++
T Consensus 642 ~~~~~~l~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 642 ERMKDQLQDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666666666666666666666666555
No 197
>PRK00106 hypothetical protein; Provisional
Probab=82.51 E-value=1.1e+02 Score=38.31 Aligned_cols=14 Identities=14% Similarity=0.212 Sum_probs=7.7
Q ss_pred hHHHHHHhHHHHHH
Q 001390 242 TADESHKQHLESVK 255 (1088)
Q Consensus 242 saEaA~KQhlEsvK 255 (1088)
+.+.|+++.++.++
T Consensus 166 t~~eak~~l~~~~~ 179 (535)
T PRK00106 166 SQAEAREIILAETE 179 (535)
T ss_pred CHHHHHHHHHHHHH
Confidence 44556666655444
No 198
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=82.30 E-value=92 Score=36.88 Aligned_cols=127 Identities=16% Similarity=0.158 Sum_probs=63.9
Q ss_pred HHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001390 100 AALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIH----DAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTH 175 (1088)
Q Consensus 100 ~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~----da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~ 175 (1088)
...+-..-+++++..+...|.+...+|...|+++.--.. +....+..++.......+.++.++..++..... ...
T Consensus 168 ~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~ 246 (444)
T TIGR03017 168 PAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSSG-KDA 246 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-ccc
Confidence 333444556667777777777777777666655421100 001111222222222223333333332221111 011
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHH
Q 001390 176 LTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKEL 229 (1088)
Q Consensus 176 Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkEL 229 (1088)
+. .+ ..+..+..|+.+...++.++..+..++-+---+...++.++..+...+
T Consensus 247 ~~-~~-~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l 298 (444)
T TIGR03017 247 LP-EV-IANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQL 298 (444)
T ss_pred ch-hh-hcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence 11 11 123566778888888888888887777666666666666666666654
No 199
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=82.22 E-value=46 Score=41.21 Aligned_cols=77 Identities=14% Similarity=0.116 Sum_probs=47.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhc
Q 001390 829 ELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTK 905 (1088)
Q Consensus 829 ELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~ 905 (1088)
.+..+.+.+..+..++++....+...-+.+..--.++..+++++..+..-..+-...++++...+.+++.+|.....
T Consensus 267 ~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~ 343 (563)
T TIGR00634 267 SLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDD 343 (563)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhC
Confidence 33444444444444444444444443333333344566677777777776666677888888888888888887665
No 200
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=82.17 E-value=38 Score=37.69 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhc
Q 001390 863 VDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTK 905 (1088)
Q Consensus 863 aEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~ 905 (1088)
.+++.+..-|...+.|.......+.-+...|..|.+++.++..
T Consensus 60 ~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 60 QDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444555555555555544
No 201
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=81.76 E-value=85 Score=37.26 Aligned_cols=56 Identities=25% Similarity=0.231 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 001390 131 EEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKL 186 (1088)
Q Consensus 131 EEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~i 186 (1088)
..|-...-.++.+...|...++.+||.++.+...++...+.....|.+++..|+.-
T Consensus 239 ~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~ 294 (384)
T PF03148_consen 239 RAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGP 294 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45557777888899999999999999999999999999888877777777665543
No 202
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=81.73 E-value=38 Score=34.17 Aligned_cols=47 Identities=23% Similarity=0.283 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001390 853 DLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQ 899 (1088)
Q Consensus 853 ~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQ 899 (1088)
.++..+..++..+..+...+..++.++.+.+..++.+...+.++..+
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555556666665555555555555544433
No 203
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=81.56 E-value=1e+02 Score=39.36 Aligned_cols=86 Identities=20% Similarity=0.216 Sum_probs=48.7
Q ss_pred HHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHH---HHHHHHHHH
Q 001390 187 IEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESV---KKIAKLESE 263 (1088)
Q Consensus 187 i~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsv---KKIakLEaE 263 (1088)
+..|.+.......++..|+.+|+.++++...+++.+..+..+.+-.-.+-..-...+..+.....+-. ....+|-.+
T Consensus 229 ~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~ 308 (670)
T KOG0239|consen 229 IKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNE 308 (670)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555677777777777777777777777666644333333222444444444444444 555566666
Q ss_pred HHHHHHHHH
Q 001390 264 CQRLRVLVR 272 (1088)
Q Consensus 264 CqRLr~l~r 272 (1088)
+++|++.+|
T Consensus 309 i~eLkGnIR 317 (670)
T KOG0239|consen 309 ILELKGNIR 317 (670)
T ss_pred HHHhhcCce
Confidence 666665543
No 204
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=81.53 E-value=81 Score=38.06 Aligned_cols=13 Identities=31% Similarity=0.705 Sum_probs=6.6
Q ss_pred CC-Ccccccccccc
Q 001390 6 PW-LWRKKSSEKTI 18 (1088)
Q Consensus 6 ~w-~w~kkssek~~ 18 (1088)
+| -|+..+-.|+.
T Consensus 157 ~~dny~~qsl~k~~ 170 (502)
T KOG0982|consen 157 SWDNYKYQSLEKDL 170 (502)
T ss_pred hHHHHHHHHHHhhh
Confidence 45 55555555543
No 205
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=81.48 E-value=19 Score=44.76 Aligned_cols=98 Identities=15% Similarity=0.174 Sum_probs=62.2
Q ss_pred chhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001390 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVD 864 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaE 864 (1088)
.-++..+..++..++..++.++.++..++..+.+++.+++.|..+++.+..+.. .+... .-.++.++.++..++.+
T Consensus 414 ~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-~~~~~---~rei~~~~~~I~~L~~~ 489 (652)
T COG2433 414 RREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR-DKVRK---DREIRARDRRIERLEKE 489 (652)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhh---hHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666666666666666666666666666655 22221 22345667777777777
Q ss_pred HHHHHHHHhhHHHHHHHhhhhh
Q 001390 865 LNEACQKLSSLEVELEDKSNCC 886 (1088)
Q Consensus 865 l~qlqeKVsSLE~ELE~er~~l 886 (1088)
+.+...+++-|+.+|...++.-
T Consensus 490 L~e~~~~ve~L~~~l~~l~k~~ 511 (652)
T COG2433 490 LEEKKKRVEELERKLAELRKMR 511 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777887777777765433
No 206
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=81.22 E-value=1.4e+02 Score=38.08 Aligned_cols=117 Identities=20% Similarity=0.143 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH-------HHHhhhhhHhhhHHHHHhh
Q 001390 135 QRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIE-------DLGKQRTQAEADSNALMVR 207 (1088)
Q Consensus 135 qki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~-------eLkee~s~~eaei~~Lq~r 207 (1088)
+...+....+..+....+..|...|+.++++|.. |..+|-.+..+.. -|+++...+...+++++.+
T Consensus 46 ~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~-------l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~q 118 (660)
T KOG4302|consen 46 QECLEIYKRKVEEASESKARLLQEIAVIEAELND-------LCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQ 118 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHH
Confidence 4444555555566666666666666666555543 3333333333222 5777777777888888888
Q ss_pred cchHHHHHHHhhHHHHHHHHHHH--------HHHHHHHHhHHhHHHHHHhHHHHHHHHH
Q 001390 208 LDSTEKENASLKYEVRVLGKELE--------IRNEEREFNRRTADESHKQHLESVKKIA 258 (1088)
Q Consensus 208 LE~~EKEn~sLKyEl~vlqkELE--------Ir~eEre~s~ksaEaA~KQhlEsvKKIa 258 (1088)
.+.--++...+..+++-+..+|. +.-.+.+++.+.++.-+.++.+..+...
T Consensus 119 k~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~ 177 (660)
T KOG4302|consen 119 KDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKS 177 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHH
Confidence 87777777777777777777743 3345666676666666666666555443
No 207
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=81.16 E-value=84 Score=33.84 Aligned_cols=116 Identities=25% Similarity=0.310 Sum_probs=82.6
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHH
Q 001390 162 TSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRR 241 (1088)
Q Consensus 162 l~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~k 241 (1088)
+-.+|..+..-+..|. .+-.-|+++..++......|...|.-+..+...++.+++ .+|-+++.++..++ .
T Consensus 65 ~l~rLeEEqqR~~~L~-------qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~--~ke~~~~~ee~~~~-~ 134 (182)
T PF15035_consen 65 ALIRLEEEQQRSEELA-------QVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE--QKEAEWREEEENFN-Q 134 (182)
T ss_pred HHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-h
Confidence 4444455555544444 444456677777777777777777777777777666554 45567777777776 5
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhhHHHHhhcC
Q 001390 242 TADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGR 293 (1088)
Q Consensus 242 saEaA~KQhlEsvKKIakLEaECqRLr~l~rk~lpgpaa~a~mk~eve~~~~ 293 (1088)
.+..-+...+.+=..+..+-.-|..+|.-+-+- |+.||.|+-..++
T Consensus 135 y~~~eh~rll~LWr~v~~lRr~f~elr~~Terd------L~~~r~e~~r~~r 180 (182)
T PF15035_consen 135 YLSSEHSRLLSLWREVVALRRQFAELRTATERD------LSDMRAEFARTSR 180 (182)
T ss_pred hhcccccHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHc
Confidence 567788889999999999999999999888775 4899999876544
No 208
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=81.13 E-value=3.6 Score=48.26 Aligned_cols=96 Identities=15% Similarity=0.235 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 001390 808 KSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMIN----EDLDTQLKVARVDLNEACQKLSSLEVELEDKS 883 (1088)
Q Consensus 808 kLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~l----e~LesqL~eleaEl~qlqeKVsSLE~ELE~er 883 (1088)
..+....++.++...+.+|+.++..++....+....++.+.... ..+.+++.+++-.+..+...+..++..+....
T Consensus 92 ~~ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~ 171 (370)
T PF02994_consen 92 EKEKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKELE 171 (370)
T ss_dssp --------------------------H-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHH
Confidence 33344445555666666777777777766655555555554433 34556666666666666666666666666666
Q ss_pred hhhHHHHHHHHHHHHHHHhh
Q 001390 884 NCCEELEATCLELQLQLESV 903 (1088)
Q Consensus 884 ~~lEEl~aKc~eLeeQLEr~ 903 (1088)
..+..+..+|.+++....+.
T Consensus 172 k~i~~l~~kl~DlEnrsRRn 191 (370)
T PF02994_consen 172 KRIKKLEDKLDDLENRSRRN 191 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhhccCC
Confidence 66666666777777776653
No 209
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=81.00 E-value=32 Score=39.24 Aligned_cols=99 Identities=15% Similarity=0.242 Sum_probs=62.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHH
Q 001390 799 QECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVE 878 (1088)
Q Consensus 799 E~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~E 878 (1088)
+-.+..+..+|.++..+|++=+.+|.+|++||.--+|---+-| |+. =+++-.|.+++-|++++.+-|++.+.-
T Consensus 67 EV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEE----CHR---VEAQLALKEARkEIkQLkQvieTmrss 139 (305)
T PF15290_consen 67 EVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEE----CHR---VEAQLALKEARKEIKQLKQVIETMRSS 139 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----HHH---HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555556666666666666667777776665544322211 221 224456778889999999999999888
Q ss_pred HHHhhhhhH----HHHHHHHHHHHHHHhhh
Q 001390 879 LEDKSNCCE----ELEATCLELQLQLESVT 904 (1088)
Q Consensus 879 LE~er~~lE----El~aKc~eLeeQLEr~e 904 (1088)
|-.+++-++ ++-.+=++|+.=|..|+
T Consensus 140 L~ekDkGiQKYFvDINiQN~KLEsLLqsME 169 (305)
T PF15290_consen 140 LAEKDKGIQKYFVDINIQNKKLESLLQSME 169 (305)
T ss_pred hchhhhhHHHHHhhhhhhHhHHHHHHHHHH
Confidence 887755555 55556666666666554
No 210
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=80.97 E-value=89 Score=33.95 Aligned_cols=101 Identities=14% Similarity=0.159 Sum_probs=73.6
Q ss_pred hhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001390 787 EFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLN 866 (1088)
Q Consensus 787 eLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~ 866 (1088)
=+++|+.++.+.+..++.....|..++.....+.......+.++..|+..+..+...+............+|.+...=+.
T Consensus 68 iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLe 147 (188)
T PF05335_consen 68 IVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLE 147 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888888888888888877777777777778888888888877777777777666666666666665566
Q ss_pred HHHHHHhhHHHHHHHhhhhhH
Q 001390 867 EACQKLSSLEVELEDKSNCCE 887 (1088)
Q Consensus 867 qlqeKVsSLE~ELE~er~~lE 887 (1088)
..+.++..|...|..-+..++
T Consensus 148 aAk~Rve~L~~QL~~Ar~D~~ 168 (188)
T PF05335_consen 148 AAKRRVEELQRQLQAARADYE 168 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666655555554
No 211
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=80.90 E-value=17 Score=33.36 Aligned_cols=64 Identities=23% Similarity=0.212 Sum_probs=47.6
Q ss_pred HHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 001390 819 SQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDK 882 (1088)
Q Consensus 819 lE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~e 882 (1088)
++..+..|+..++.+...++..+..++.+....+....+|..+-.+...+...++.|.+|++..
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777777777777777777777777777777777777777777877777777776553
No 212
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=80.89 E-value=1.2e+02 Score=35.27 Aligned_cols=77 Identities=21% Similarity=0.211 Sum_probs=45.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhhHHHHh
Q 001390 211 TEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEI 290 (1088)
Q Consensus 211 ~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk~lpgpaa~a~mk~eve~ 290 (1088)
+...-..|+..|.+-..--+-...-..-|..-+..-++......|+|.+||.|+.-|+...-+. .+||..|-.|...
T Consensus 207 ~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~---n~~l~~m~eer~~ 283 (309)
T PF09728_consen 207 LKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKS---NKALIEMAEERQK 283 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHH
Confidence 3333344444444444444444444455666667777777777777778888877777666553 4566666665444
No 213
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=80.79 E-value=28 Score=41.74 Aligned_cols=18 Identities=39% Similarity=0.453 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 001390 155 LEEKLAETSKRLAKLGVE 172 (1088)
Q Consensus 155 LE~kL~El~k~L~k~~aE 172 (1088)
.|..|.+++++|.+++.|
T Consensus 257 aEqsl~dlQk~Lekar~e 274 (575)
T KOG4403|consen 257 AEQSLEDLQKRLEKAREE 274 (575)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334444444444444444
No 214
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=80.51 E-value=1.9e+02 Score=37.40 Aligned_cols=156 Identities=15% Similarity=0.166 Sum_probs=77.3
Q ss_pred HHhHHHHHHHh-------hhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhh-----hhhHHHHHHHH
Q 001390 71 KKHAKMAQEAI-------TGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLH-----FVREEQEQRIH 138 (1088)
Q Consensus 71 kqh~kvaeeav-------~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr-----~~rEEqEqki~ 138 (1088)
..+.-|+|||- +-.|.+|-|++.+|.||.++++-.-.-+-|.-....|+--+.+--+ -+--+.-+-.+
T Consensus 365 EEQ~~VVeeA~e~~~e~e~r~e~~E~EvD~lksQLADYQQALD~QQTRAlQYQQAi~ALekAk~Lc~l~dLt~~~~e~~~ 444 (1480)
T COG3096 365 EEQNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQYQQAIAALERAKELCHLPDLTADSAEEWL 444 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHH
Confidence 44555666654 5667888999999999999988654444444433333332222110 00011122223
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhh---------hHhhhHHHHHhhcc
Q 001390 139 DAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRT---------QAEADSNALMVRLD 209 (1088)
Q Consensus 139 da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s---------~~eaei~~Lq~rLE 209 (1088)
+.... ....+-.++-++++++.-..+.+....++.+-=-++..++-...+ ..-.. ..+-.+-.
T Consensus 445 ~~f~A-------~~e~~Te~lL~Le~kms~s~AA~sQF~~AyqLV~~iaGE~~RS~A~~~A~~llR~~p~q-~~~aq~~~ 516 (1480)
T COG3096 445 ETFQA-------KEEEATEKLLSLEQKMSMAQAAHSQFEQAYQLVVAIAGELARSEAWDVARELLREGPDQ-RHLAEQVQ 516 (1480)
T ss_pred HHHHH-------hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhCccchhhHHHHHHHHHHhChhh-HHHHHhhh
Confidence 33333 333444555566666655566666666666532233322222221 00000 11223445
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHH
Q 001390 210 STEKENASLKYEVRVLGKELEIRNE 234 (1088)
Q Consensus 210 ~~EKEn~sLKyEl~vlqkELEIr~e 234 (1088)
+|.-+...|...+..++.-..++++
T Consensus 517 ~lr~~l~eLEqr~~qQqsa~~Ll~~ 541 (1480)
T COG3096 517 PLRMRLSELEQRLRQQQSAERLLAD 541 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666655555543
No 215
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=80.50 E-value=20 Score=37.34 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=14.3
Q ss_pred HHHHHHHHhhc--cccccchh
Q 001390 698 SIALEWIMNHC--FSLQDVSS 716 (1088)
Q Consensus 698 ~~~L~wi~n~~--~s~~d~s~ 716 (1088)
..||+|+..++ ||.+|+.+
T Consensus 4 ~~Il~y~~~qNRPys~~di~~ 24 (169)
T PF07106_consen 4 DAILEYMKEQNRPYSAQDIFD 24 (169)
T ss_pred HHHHHHHHHcCCCCcHHHHHH
Confidence 46788888777 88888643
No 216
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=80.45 E-value=2.2e+02 Score=38.21 Aligned_cols=30 Identities=13% Similarity=0.209 Sum_probs=20.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001390 243 ADESHKQHLESVKKIAKLESECQRLRVLVR 272 (1088)
Q Consensus 243 aEaA~KQhlEsvKKIakLEaECqRLr~l~r 272 (1088)
.+....++.+..+.+..+..++.+|..+.+
T Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 884 (1047)
T PRK10246 855 DADNRQQQQALMQQIAQATQQVEDWGYLNS 884 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666777777777777777776653
No 217
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.14 E-value=21 Score=41.57 Aligned_cols=75 Identities=19% Similarity=0.175 Sum_probs=44.1
Q ss_pred HHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhcCCCCcccchhhhhhhhhhHhHHHHHhhHHHHHHHHHHHHHHHh
Q 001390 870 QKLSSLEVELEDKSNCCEELEATCLELQLQLESVTKSGIPTDELKQDEKQIQTDWEIATASEKLAECQETILNLGKQLK 948 (1088)
Q Consensus 870 eKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~~~~~~~~~~~e~~~~kqe~EIaaAAeKLAECQETI~~LGKQLK 948 (1088)
.-+..|++++...+..++=+..+.++..+.++-.+. -..+....-...-.+|..|-. |.-|| |+-+|..|||-|.
T Consensus 253 ~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~-~~~D~~~~~~~~l~kq~l~~~--A~d~a-ieD~i~~L~~~~r 327 (365)
T KOG2391|consen 253 AMKETLEQQLQSLQKNIDILKSKVREALEKAENLEA-LDIDEAIECTAPLYKQILECY--ALDLA-IEDAIYSLGKSLR 327 (365)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcC-CCchhhhhccchHHHHHHHhh--hhhhH-HHHHHHHHHHHHh
Confidence 334455566666666666666666665444443111 122233333345578876644 65555 9999999999664
No 218
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=80.06 E-value=42 Score=40.23 Aligned_cols=78 Identities=22% Similarity=0.198 Sum_probs=37.1
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHH
Q 001390 165 RLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTAD 244 (1088)
Q Consensus 165 ~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaE 244 (1088)
++..++++..++..-++.|+..+..|+++..+...+.-. .+..++ .-++.....-..++-++++.|++..|.++
T Consensus 35 q~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~----~~a~~~--~~t~~~~~~en~~~r~~~eir~~~~q~~e 108 (459)
T KOG0288|consen 35 QLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR----EEATEK--TLTVDVLIAENLRIRSLNEIRELREQKAE 108 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344444444445555555555555555555554444321 111111 11223333444556666777777666665
Q ss_pred HHHH
Q 001390 245 ESHK 248 (1088)
Q Consensus 245 aA~K 248 (1088)
-..+
T Consensus 109 ~~n~ 112 (459)
T KOG0288|consen 109 FENA 112 (459)
T ss_pred hccc
Confidence 4443
No 219
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=80.02 E-value=51 Score=38.45 Aligned_cols=84 Identities=15% Similarity=0.192 Sum_probs=63.5
Q ss_pred HHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHH---HHHHHHH--HHHHHhHHhHHHHHHhHHHHHHHHHH
Q 001390 185 KLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLG---KELEIRN--EEREFNRRTADESHKQHLESVKKIAK 259 (1088)
Q Consensus 185 ~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlq---kELEIr~--eEre~s~ksaEaA~KQhlEsvKKIak 259 (1088)
.++.+.+++--....++..|+++|..+++++.-|+..+--+. ..+..+. .||+.-...+|.++++.......+..
T Consensus 72 ~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs 151 (319)
T PF09789_consen 72 QLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQS 151 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777778888999999999999999988887554433 3344555 77777777888888888888888877
Q ss_pred HHHHHHHHH
Q 001390 260 LESECQRLR 268 (1088)
Q Consensus 260 LEaECqRLr 268 (1088)
+-.|-+.+.
T Consensus 152 ~lDEkeEl~ 160 (319)
T PF09789_consen 152 LLDEKEELV 160 (319)
T ss_pred HHHHHHHHH
Confidence 777766664
No 220
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=79.87 E-value=45 Score=32.25 Aligned_cols=43 Identities=16% Similarity=0.129 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHH
Q 001390 854 LDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLEL 896 (1088)
Q Consensus 854 LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eL 896 (1088)
...-...++..+..+...+..++..+++......++..++.++
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555555555555555555555444
No 221
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=79.54 E-value=26 Score=38.71 Aligned_cols=65 Identities=26% Similarity=0.263 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhh
Q 001390 840 IEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVT 904 (1088)
Q Consensus 840 lEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e 904 (1088)
++++.....+...-+++++.....+++..++++..|++..+........+..+...|++|++.-.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~~ 213 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESGG 213 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhccC
Confidence 66666677777777888888888899999999999999999999999999999999999998543
No 222
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=79.49 E-value=2.3e+02 Score=37.91 Aligned_cols=149 Identities=16% Similarity=0.136 Sum_probs=103.5
Q ss_pred CchhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001390 784 PGSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARV 863 (1088)
Q Consensus 784 ~~eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~elea 863 (1088)
.++++.+|...+..+...|.+++.. . .++.+...++.-++..+..+..+++.++..+.+.+-++...+.
T Consensus 650 dek~~~~L~~~k~rl~eel~ei~~~-~----------~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~ 718 (1141)
T KOG0018|consen 650 DEKEVDQLKEKKERLLEELKEIQKR-R----------KEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTES 718 (1141)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh-h----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778888888888887777776641 1 1445555566666666666666666666667777777778888
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhc--CCCCcccchhhhhhhhhhHhHHHHHhhHHHHHHHHH
Q 001390 864 DLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTK--SGIPTDELKQDEKQIQTDWEIATASEKLAECQETIL 941 (1088)
Q Consensus 864 El~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~--~~~~~~~~~~e~~~~kqe~EIaaAAeKLAECQETI~ 941 (1088)
++....-+++.+..+|+.......+|..++.+.++.+-+-=. -+.+ --... +-..+| .-|.|+.|-+.-|+
T Consensus 719 ~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~-ir~Ye-e~~~~~-----~~a~k~~ef~~q~~ 791 (1141)
T KOG0018|consen 719 EIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVR-IREYE-ERELQQ-----EFAKKRLEFENQKA 791 (1141)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCee-eehHH-HHHHHH-----HHHHHHHHHHHHHH
Confidence 888888899999999999998899999999998888875211 1111 11111 122332 23788999999999
Q ss_pred HHHHHHhhc
Q 001390 942 NLGKQLKAL 950 (1088)
Q Consensus 942 ~LGKQLKaL 950 (1088)
.|+-||.-.
T Consensus 792 ~l~~~l~fe 800 (1141)
T KOG0018|consen 792 KLENQLDFE 800 (1141)
T ss_pred HHhhhhhhe
Confidence 999998644
No 223
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=79.45 E-value=18 Score=32.53 Aligned_cols=58 Identities=22% Similarity=0.294 Sum_probs=38.9
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 001390 826 SQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKS 883 (1088)
Q Consensus 826 LksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er 883 (1088)
|++-|++--..++.+.++|......+-..+.+|.+.+.....+..+|..|+.+++..+
T Consensus 2 lQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 2 LQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444455555566666677766666777777777777777777777777777776543
No 224
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=79.38 E-value=39 Score=40.53 Aligned_cols=18 Identities=6% Similarity=0.054 Sum_probs=9.8
Q ss_pred ecccchhhHHHHHHHHHH
Q 001390 662 FQWKTSELSDILQQFVHA 679 (1088)
Q Consensus 662 ~~~k~sel~~~Le~f~~~ 679 (1088)
+.-...++...+..+-.-
T Consensus 88 ~~ld~~~~~~~~~~~~~~ 105 (457)
T TIGR01000 88 VVYDNGNEENQKQLLEQQ 105 (457)
T ss_pred EEECchHHHHHHHHHHHH
Confidence 444555666666665333
No 225
>PF13166 AAA_13: AAA domain
Probab=79.33 E-value=1.4e+02 Score=37.62 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=9.8
Q ss_pred HHhhHHHHHHHHHhHHHHHHHHH
Q 001390 823 VSNSQNELDILKKSKEVIEDQVK 845 (1088)
Q Consensus 823 LeELksELesLeES~selEeQLk 845 (1088)
..++...+..+...+..+...|.
T Consensus 324 ~~~~~~~~~~l~~~l~~l~~~L~ 346 (712)
T PF13166_consen 324 KEELKSAIEALKEELEELKKALE 346 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443333
No 226
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=79.20 E-value=1.1e+02 Score=36.23 Aligned_cols=15 Identities=27% Similarity=0.255 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 001390 933 LAECQETILNLGKQL 947 (1088)
Q Consensus 933 LAECQETI~~LGKQL 947 (1088)
+++=+.+|..+-+++
T Consensus 320 ~~~l~~~l~~~~~~~ 334 (444)
T TIGR03017 320 EAELREALENQKAKV 334 (444)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 227
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=78.89 E-value=37 Score=40.13 Aligned_cols=100 Identities=16% Similarity=0.185 Sum_probs=44.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHH
Q 001390 799 QECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVE 878 (1088)
Q Consensus 799 E~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~E 878 (1088)
...++....-...+...+.++...|..|..++...-+.++.-|..|.. +++.+-.+|.....++...+.+...+..-
T Consensus 219 R~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~---qle~l~~eYr~~~~~ls~~~~~y~~~s~~ 295 (359)
T PF10498_consen 219 RSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINN---QLEPLIQEYRSAQDELSEVQEKYKQASEG 295 (359)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 444444444444444555555555555555555544444444433322 33333333444444444444444444433
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHH
Q 001390 879 LEDKSNCCEELEATCLELQLQLE 901 (1088)
Q Consensus 879 LE~er~~lEEl~aKc~eLeeQLE 901 (1088)
+....+.+.++..++++.+.+++
T Consensus 296 V~~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 296 VSERTRELAEISEELEQVKQEME 318 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 228
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=78.87 E-value=1.1e+02 Score=33.64 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=49.7
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 001390 112 LIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLG 191 (1088)
Q Consensus 112 vkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLk 191 (1088)
+.+|...-.+|.+.+..+.+.-.+... ..-.+.+.+...+..++.+++..|..-+.+...|..=|+ .+...+
T Consensus 6 l~yL~~~~~e~~~~i~~L~~q~~~~~~----~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq----~l~~~~ 77 (206)
T PF14988_consen 6 LEYLKKKDEEKEKKIEKLWKQYIQQLE----EIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQ----ALKEFR 77 (206)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHH
Confidence 344555555565555444332222222 122444555556666666666665555544433332232 344444
Q ss_pred hhhhhHhhhHHHHHhhcchHHHHHHHhhHHH
Q 001390 192 KQRTQAEADSNALMVRLDSTEKENASLKYEV 222 (1088)
Q Consensus 192 ee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl 222 (1088)
.-+...+.+|..|+..+.....+....-.++
T Consensus 78 ~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~ 108 (206)
T PF14988_consen 78 RLKEQQEREIQTLEEELEKMRAEHAEKLQEA 108 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555554444433
No 229
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=78.45 E-value=73 Score=39.17 Aligned_cols=32 Identities=19% Similarity=0.158 Sum_probs=21.7
Q ss_pred HHHHhhcchHHHHHHHhhHHHHHHHHHHHHHH
Q 001390 202 NALMVRLDSTEKENASLKYEVRVLGKELEIRN 233 (1088)
Q Consensus 202 ~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~ 233 (1088)
.+++.++..++-+++++-..++.++.||.-+.
T Consensus 271 ~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 271 RQLTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45566667777777777777777777766544
No 230
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=78.28 E-value=44 Score=38.12 Aligned_cols=114 Identities=18% Similarity=0.148 Sum_probs=73.4
Q ss_pred chhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001390 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVD 864 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaE 864 (1088)
..++..|+.....|..+.+-=+-+++.+..-++.-.++.++-+.+...++..++.+-+....+.....- +.-+
T Consensus 17 LqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqK-------lshd 89 (307)
T PF10481_consen 17 LQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQK-------LSHD 89 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHH-------hhHH
Confidence 456667777777777777766667777777776666777777777777777666665555444433322 2333
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhc
Q 001390 865 LNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTK 905 (1088)
Q Consensus 865 l~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~ 905 (1088)
+..-...|..|+..|..-+.+++.+...+..++.+|++...
T Consensus 90 lq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 90 LQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQ 130 (307)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444556666666666677777777777778888887554
No 231
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=77.72 E-value=41 Score=44.40 Aligned_cols=69 Identities=14% Similarity=0.110 Sum_probs=31.8
Q ss_pred hhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------hhHHHHHHHHHhHHHHHHHHHHHHHHhhhH
Q 001390 786 SEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVS-------NSQNELDILKKSKEVIEDQVKLQKMINEDL 854 (1088)
Q Consensus 786 eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLe-------ELksELesLeES~selEeQLk~~~e~le~L 854 (1088)
+.+-+.+.++..+...+++...+++....++..+...+. .|+.+++.++..++....++..+.+.+..+
T Consensus 434 e~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~ 509 (1041)
T KOG0243|consen 434 ERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQA 509 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555555555555555555554444 444444444444444444444443333333
No 232
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=77.41 E-value=1.9e+02 Score=35.86 Aligned_cols=13 Identities=31% Similarity=0.452 Sum_probs=6.5
Q ss_pred HHHHHHhHHHHHH
Q 001390 243 ADESHKQHLESVK 255 (1088)
Q Consensus 243 aEaA~KQhlEsvK 255 (1088)
.+.|++++++..+
T Consensus 146 ~~eak~~l~~~~~ 158 (514)
T TIGR03319 146 QEEAKEILLEEVE 158 (514)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555554443
No 233
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.20 E-value=1.2e+02 Score=33.44 Aligned_cols=42 Identities=31% Similarity=0.189 Sum_probs=31.5
Q ss_pred hcccchhHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Q 001390 62 ECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQ 103 (1088)
Q Consensus 62 ~~~~kd~lvkqh~kvaeeav~GweKaEaE~~slKkqLe~~~q 103 (1088)
+=..-|-+|++|+|.--.++.--+|-+.+....++--.++.+
T Consensus 27 e~~~~dr~v~~l~ksf~~~~~E~~kee~~y~ea~ri~Ka~L~ 68 (222)
T KOG3215|consen 27 EGDGGDRLVEHLEKSFVLAKAEIEKEEKEYSEAKRIRKALLA 68 (222)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHH
Confidence 344567899999999999998888888777777666544333
No 234
>COG5283 Phage-related tail protein [Function unknown]
Probab=77.08 E-value=1.1e+02 Score=41.14 Aligned_cols=156 Identities=15% Similarity=0.118 Sum_probs=121.1
Q ss_pred hhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001390 786 SEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDL 865 (1088)
Q Consensus 786 eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl 865 (1088)
+.++.|.+-+......-..++.+..-+..-+.+.-.+++.|..-++.++.-+..+..++++........+..|.++..++
T Consensus 22 ~~in~L~ssi~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~ 101 (1213)
T COG5283 22 KNINVLKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQY 101 (1213)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788888888888888888888888888888888888888888888888888888888888888888899999999
Q ss_pred HHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhcCCCCcccchhhhhhhhhhHhHHHHHhhHHHHHHHHHHHH-
Q 001390 866 NEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTKSGIPTDELKQDEKQIQTDWEIATASEKLAECQETILNLG- 944 (1088)
Q Consensus 866 ~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~~~~~~~~~~~e~~~~kqe~EIaaAAeKLAECQETI~~LG- 944 (1088)
.+...++.++...+.--..++.--+..++.++.++...... ..-|-...-++-.+|-+-+.++.-|+
T Consensus 102 tqae~~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~t~k~------------maaQ~~l~eqt~n~~g~a~~~~~gl~e 169 (1213)
T COG5283 102 TQAENKLRSLSGQFGVASEQLMLQQKEIQRLQYAISTLNKS------------MAAQARLLEQTGNKFGTADAKVVGLRE 169 (1213)
T ss_pred HHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhhhhh------------hHHHHHHHHHhhhHHHHHHHhhhhHhH
Confidence 99999988888888877777777788888888888854431 11122344467788888888888887
Q ss_pred ---HHHhhccCc
Q 001390 945 ---KQLKALASP 953 (1088)
Q Consensus 945 ---KQLKaLa~~ 953 (1088)
+|..+|..+
T Consensus 170 sf~~q~~aln~q 181 (1213)
T COG5283 170 SFGRQTEALNKQ 181 (1213)
T ss_pred HHHHHHHHHHHH
Confidence 677777543
No 235
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=76.98 E-value=17 Score=33.61 Aligned_cols=65 Identities=31% Similarity=0.352 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHH
Q 001390 158 KLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEV 222 (1088)
Q Consensus 158 kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl 222 (1088)
+|.+-..+++.+..|=..|++.-.....+|..|+......+..+..+..+++..++++..|+..+
T Consensus 6 ~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 6 KLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333345444455566666666666666777777777777777666666543
No 236
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=76.62 E-value=63 Score=35.82 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhc
Q 001390 839 VIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTK 905 (1088)
Q Consensus 839 elEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~ 905 (1088)
.+..++..+....+.++.....++..+..+..++..|+.+++.....-.++.--+.++-..|+.+-.
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333334444444455555666666667777777777777777777777777776444
No 237
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=75.78 E-value=1.3e+02 Score=33.09 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=17.3
Q ss_pred HHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHH
Q 001390 230 EIRNEEREFNRRTADESHKQHLESVKKIAKLESEC 264 (1088)
Q Consensus 230 EIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaEC 264 (1088)
-+=.+|++--.+.=--..-.+.++-++-..||.++
T Consensus 166 ~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l 200 (202)
T PF06818_consen 166 RTWQEEKEKVIRYQKQLQQNYVQMYQRNQALEREL 200 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33345555555553333444555555555555544
No 238
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=75.66 E-value=70 Score=35.70 Aligned_cols=69 Identities=17% Similarity=0.202 Sum_probs=36.9
Q ss_pred HHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHH
Q 001390 821 KIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEEL 889 (1088)
Q Consensus 821 ~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl 889 (1088)
.-|.++..+...|..+.....++|..+..-+..++..+..++.+-+..+..+..+..|+...+..+.++
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555555555566665555555555444444444
No 239
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=75.62 E-value=1.2e+02 Score=32.68 Aligned_cols=114 Identities=24% Similarity=0.282 Sum_probs=51.2
Q ss_pred HHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhHHHHHHHHHH
Q 001390 109 EERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKL-GVENTHLTKALLAKEKLI 187 (1088)
Q Consensus 109 EErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~-~aEn~~Ls~~l~~~~~ii 187 (1088)
++-..-|+..+.++..+|..++ .....+......++.-..+++..+.+.+.+.... ..- ++.+-
T Consensus 22 EDP~~~l~q~ird~e~~l~~a~-----~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g----------~edLA 86 (221)
T PF04012_consen 22 EDPEKMLEQAIRDMEEQLRKAR-----QALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAG----------REDLA 86 (221)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CHHHH
Confidence 3344556666666666663332 2222222223334444444444444444432111 111 22333
Q ss_pred HHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001390 188 EDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEERE 237 (1088)
Q Consensus 188 ~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre 237 (1088)
...-..+..++..+..++..++........|+..|..+...+.-+..+++
T Consensus 87 r~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~ 136 (221)
T PF04012_consen 87 REALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKRE 136 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555555555665555555555555555555444443333
No 240
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=75.57 E-value=4 Score=47.23 Aligned_cols=122 Identities=11% Similarity=0.164 Sum_probs=32.6
Q ss_pred chhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001390 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVD 864 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaE 864 (1088)
.|.+-.|+.-...+..-+..+...+-.+..++..+...|.+++..|..+...+..+...+..+.....++...+......
T Consensus 34 ~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ss 113 (326)
T PF04582_consen 34 RERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSS 113 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhh
Confidence 45566666666666666666666666666777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhcC
Q 001390 865 LNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTKS 906 (1088)
Q Consensus 865 l~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~~ 906 (1088)
+..++..+..+..++-..+.......-.+.+|+.++..++..
T Consensus 114 IS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~ 155 (326)
T PF04582_consen 114 ISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESG 155 (326)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcC
Confidence 888888888888888888888888888899999988887763
No 241
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=75.41 E-value=46 Score=42.51 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=11.5
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHH
Q 001390 874 SLEVELEDKSNCCEELEATCLELQL 898 (1088)
Q Consensus 874 SLE~ELE~er~~lEEl~aKc~eLee 898 (1088)
.|+.+.+-.+..+..+..|.++++.
T Consensus 374 ~L~R~~~~~~~lY~~lL~r~~e~~i 398 (726)
T PRK09841 374 RLSRDVEAGRAVYLQLLNRQQELSI 398 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555554433
No 242
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=75.41 E-value=36 Score=31.91 Aligned_cols=78 Identities=15% Similarity=0.215 Sum_probs=46.8
Q ss_pred HHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHH
Q 001390 819 SQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVA-RVDLNEACQKLSSLEVELEDKSNCCEELEATCLEL 896 (1088)
Q Consensus 819 lE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~el-eaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eL 896 (1088)
+.+.|..+...+..+..+-..+-.++......+..+..-.... -..+.....|+..++.++.........+..|...|
T Consensus 12 l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 12 LEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4466666666666666666666666666666665444422211 22333477777777777777766666666665554
No 243
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=75.31 E-value=58 Score=31.91 Aligned_cols=40 Identities=10% Similarity=0.106 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHH
Q 001390 855 DTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCL 894 (1088)
Q Consensus 855 esqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~ 894 (1088)
++-...++..+..+..++..|+..+++.+..+.+++..++
T Consensus 66 ~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 66 EEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444554444444444444444433
No 244
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=75.24 E-value=1.6e+02 Score=33.67 Aligned_cols=78 Identities=19% Similarity=0.229 Sum_probs=39.9
Q ss_pred hhHhHhhhHHHHHHHHhhccc---c--hhHHHHhHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHhhhhhHHHhhhhhHHH
Q 001390 45 LENDVKNLNDKLFSALAECNA---K--DDLVKKHAKMAQEAITGREKA-EAEVVSLKQELDAALQQRDTGEERLIHLDAA 118 (1088)
Q Consensus 45 ~~~~~k~l~ekLs~a~~~~~~---k--d~lvkqh~kvaeeav~GweKa-EaE~~slKkqLe~~~qq~v~lEErvkhLd~a 118 (1088)
.+..+..+|..|..+.-++-. + ..|+-||-+.+ -|++--+.. ...+..++..|.+++. ..+.++..|..-
T Consensus 14 h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~-~~i~~le~~~~~~l~~ak~eLqe~ee---k~e~~l~~Lq~q 89 (258)
T PF15397_consen 14 HEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYR-TAIDILEYSNHKQLQQAKAELQEWEE---KEESKLSKLQQQ 89 (258)
T ss_pred HHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHH-HHHHHHHccChHHHHHHHHHHHHHHH---HHHhHHHHHHHH
Confidence 456677777777776655411 1 12333433222 122222221 2235556666666655 455666666666
Q ss_pred HHHHHHHh
Q 001390 119 LKECMDQL 126 (1088)
Q Consensus 119 LKecmkQL 126 (1088)
+..+...+
T Consensus 90 l~~l~akI 97 (258)
T PF15397_consen 90 LEQLDAKI 97 (258)
T ss_pred HHHHHHHH
Confidence 66666665
No 245
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=75.18 E-value=51 Score=33.25 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=19.4
Q ss_pred HHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhh
Q 001390 867 EACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVT 904 (1088)
Q Consensus 867 qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e 904 (1088)
-+..++..|+..+......+..+..++..+..++.++.
T Consensus 98 ~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 98 ILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555555555555555555443
No 246
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=74.95 E-value=1.3e+02 Score=33.30 Aligned_cols=53 Identities=21% Similarity=0.164 Sum_probs=22.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHH
Q 001390 805 AIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQ 857 (1088)
Q Consensus 805 ~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~Lesq 857 (1088)
.+.++.....+.+.+..++..|+.+++.++..+..++..+..+...+..++.+
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~q 92 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQ 92 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444444444333333333
No 247
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=74.70 E-value=1.8e+02 Score=37.44 Aligned_cols=190 Identities=19% Similarity=0.217 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHH
Q 001390 145 SMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRV 224 (1088)
Q Consensus 145 s~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~v 224 (1088)
..+.+.-+...|-++.-+++++.....|++... .+..+|.. +++.-.+.+-+.+..|.+|+-.+..
T Consensus 58 ~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~-------d~ndklE~-------~Lankda~lrq~eekn~slqerLel 123 (916)
T KOG0249|consen 58 IREAMAQKEDMEERITTLEKRFLNAQRESTSIH-------DLNDKLEN-------ELANKDADLRQNEEKNRSLQERLEL 123 (916)
T ss_pred hhhHHhhhcccccccchHHHHHHhccCCCCCcc-------cchHHHHH-------HHhCcchhhchhHHhhhhhhHHHHH
Confidence 344555566777788888888877777764433 12222222 2222222333333344444444433
Q ss_pred HHHH---------HHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhhHHHHhhcCCC
Q 001390 225 LGKE---------LEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRES 295 (1088)
Q Consensus 225 lqkE---------LEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk~lpgpaa~a~mk~eve~~~~~~ 295 (1088)
++++ |...+-+..-...++-+|+..+.+....+.+|+.+.+|+-+.+.. |-.+.+++-+. .
T Consensus 124 aE~~l~qs~rae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~r------arqreemneeh--~-- 193 (916)
T KOG0249|consen 124 AEPKLQQSLRAETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQR------ARQREKMNEEH--N-- 193 (916)
T ss_pred hhHhhHhHHhhhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhhhh--c--
Confidence 3333 223333333334455566777778888888999999988876654 22333443332 1
Q ss_pred hhhhhccCCCCCCCcccccCCCCCCCCCcchhhhHHHHHHHhHHHHHHHHH--HHhhhhhhhhHHHHHHHHhhhhhhHHH
Q 001390 296 PETRRKRLNSSPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLKE--VLDKKTNELQFSRTMYARAASKLSEVE 373 (1088)
Q Consensus 296 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eeEnk~lke--~L~~k~~ELq~sr~~~a~t~skL~~~e 373 (1088)
.+.. |.. +.+--..+-+|..++|+-|.-..+ .+.++-.+++-.+-....--.+|.+..
T Consensus 194 -----~rls------------dtv---dErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~ 253 (916)
T KOG0249|consen 194 -----KRLS------------DTV---DERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGEL 253 (916)
T ss_pred -----cccc------------ccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 1110 000 122223456667777665543322 223333444444455555556666666
Q ss_pred HHHHH
Q 001390 374 SQIEE 378 (1088)
Q Consensus 374 ~q~~~ 378 (1088)
.||..
T Consensus 254 ~qL~~ 258 (916)
T KOG0249|consen 254 DQLRR 258 (916)
T ss_pred HHHHH
Confidence 66653
No 248
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.49 E-value=2.4e+02 Score=35.51 Aligned_cols=92 Identities=15% Similarity=0.281 Sum_probs=61.7
Q ss_pred HHHhhcchHHHHHHHhhHHHHHHHHH--------------HHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001390 203 ALMVRLDSTEKENASLKYEVRVLGKE--------------LEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLR 268 (1088)
Q Consensus 203 ~Lq~rLE~~EKEn~sLKyEl~vlqkE--------------LEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr 268 (1088)
.|++.|+-..|.+--|.|.|.-+..+ +.+|.++.-++..=+-..++......++++++|.+|.-|+
T Consensus 463 sL~~~LeqAsK~CRIL~~RL~K~~R~q~R~~~~~~~d~~kIK~LE~e~R~S~~Ls~~L~~ElE~~~~~~~~~e~~~evL~ 542 (852)
T KOG4787|consen 463 SLATKLEQANKQCRILNERLNKLHRKQVRDGEIQYSDELKIKILELEKRLSEKLAIDLVSELEGKIPTIDEIEQCCEVLA 542 (852)
T ss_pred HHHHHHHHHhchhHHHHHHHhHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHhHHHHHHHHHH
Confidence 45667777777777777766554433 7778888888888777788888888999999999998887
Q ss_pred HHHHhcCCChHHHhhhhHHHHhhcCCChhhhhc
Q 001390 269 VLVRKRLPGPAALAKMKNEVEILGRESPETRRK 301 (1088)
Q Consensus 269 ~l~rk~lpgpaa~a~mk~eve~~~~~~~~~r~~ 301 (1088)
...- +-+++--++=..|....+++|+
T Consensus 543 ~~~~-------~t~~l~Kq~L~~~~~q~de~r~ 568 (852)
T KOG4787|consen 543 AVET-------QTGRLCKQFLKIDHAQKDERRR 568 (852)
T ss_pred HHhh-------hHHHHHHHHHHhcccCcchHHH
Confidence 5432 1233334444445444445543
No 249
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.81 E-value=1.6e+02 Score=36.82 Aligned_cols=65 Identities=20% Similarity=0.221 Sum_probs=42.8
Q ss_pred HHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001390 96 QELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAE 161 (1088)
Q Consensus 96 kqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~E 161 (1088)
..++.+.+.+--|.|+|..|-++|++.|.++-.++++-.+..-. ..+.-.++...-.-||.+-++
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~-glk~ds~Lk~leIalEqkkEe 395 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASA-GLKRDSKLKSLEIALEQKKEE 395 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhhhHHHHHHHHHHHH
Confidence 34566777777899999999999999999998888876654332 222234444444444444333
No 250
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=73.69 E-value=1.5e+02 Score=32.73 Aligned_cols=77 Identities=16% Similarity=0.230 Sum_probs=41.1
Q ss_pred HhHhhhHHHHHHHHhhcccchhHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHh
Q 001390 47 NDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQL 126 (1088)
Q Consensus 47 ~~~k~l~ekLs~a~~~~~~kd~lvkqh~kvaeeav~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQL 126 (1088)
.....|..|...-......-..+|...-++.-..+..|++-. ...+..+..+...+-.+-..+..++.+.-.+.+..
T Consensus 23 ~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~---~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ry 99 (207)
T PF05010_consen 23 EEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQK---ELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRY 99 (207)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhH---HhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 344555555555555555555666666666666666665542 22233344444444445555555555555555544
No 251
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=73.58 E-value=39 Score=31.96 Aligned_cols=55 Identities=18% Similarity=0.252 Sum_probs=28.7
Q ss_pred HHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhH
Q 001390 821 KIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSL 875 (1088)
Q Consensus 821 ~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSL 875 (1088)
..|.-|+-+++.+++.+..+..+........+.+..+...++.+.+.-++++.+|
T Consensus 18 dtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555544444444555555555556666666666555
No 252
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=73.58 E-value=87 Score=37.82 Aligned_cols=111 Identities=14% Similarity=0.095 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Q 001390 795 NKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSS 874 (1088)
Q Consensus 795 K~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsS 874 (1088)
+++++++++.....-..++.-+.-+.-....|-.+.+-..+.+..+-.|+.|....+......|-...-+-...++-+.-
T Consensus 299 ~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELiee 378 (502)
T KOG0982|consen 299 KENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEE 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34444444444444444444333333333333344444444444444444444444444444444444444444444555
Q ss_pred HHHHHHHhhhhhHHHH--------HHHHHHHHHHHhhhc
Q 001390 875 LEVELEDKSNCCEELE--------ATCLELQLQLESVTK 905 (1088)
Q Consensus 875 LE~ELE~er~~lEEl~--------aKc~eLeeQLEr~e~ 905 (1088)
|..+++..+...-.++ +|..+|+.++.++.+
T Consensus 379 lrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq 417 (502)
T KOG0982|consen 379 LRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQ 417 (502)
T ss_pred HHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhcc
Confidence 5555555444444333 455555555555554
No 253
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=73.35 E-value=25 Score=37.83 Aligned_cols=83 Identities=22% Similarity=0.329 Sum_probs=55.0
Q ss_pred HHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-cCCChH
Q 001390 201 SNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRK-RLPGPA 279 (1088)
Q Consensus 201 i~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk-~lpgpa 279 (1088)
...++.+++.+++++..++.++..++..++.....|.-+... .....++..|+.++.+|+..+.+ .-=.|.
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR--------~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~ 135 (188)
T PF03962_consen 64 KQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEER--------EELLEELEELKKELKELKKELEKYSENDPE 135 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 345667777788888888888888888888777777666222 23444555555555555544441 123788
Q ss_pred HHhhhhHHHHhh
Q 001390 280 ALAKMKNEVEIL 291 (1088)
Q Consensus 280 a~a~mk~eve~~ 291 (1088)
.+.+|+.++..+
T Consensus 136 ~i~~~~~~~~~~ 147 (188)
T PF03962_consen 136 KIEKLKEEIKIA 147 (188)
T ss_pred HHHHHHHHHHHH
Confidence 999999998863
No 254
>PRK10698 phage shock protein PspA; Provisional
Probab=73.33 E-value=1.5e+02 Score=32.69 Aligned_cols=63 Identities=16% Similarity=0.212 Sum_probs=30.1
Q ss_pred HHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHH
Q 001390 201 SNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQR 266 (1088)
Q Consensus 201 i~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqR 266 (1088)
+..|+.+++.+..+-..|......+.....+........ .+.+-...-....||..+|++..-
T Consensus 122 l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~---~~~a~~~f~rmE~ki~~~Ea~aea 184 (222)
T PRK10698 122 IGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGK---LDEAMARFESFERRIDQMEAEAES 184 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---cchHHHHHHHHHHHHHHHHHHHhH
Confidence 334444444455555555555555555444433332211 233444455555666666665554
No 255
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=73.32 E-value=53 Score=40.48 Aligned_cols=58 Identities=14% Similarity=0.145 Sum_probs=30.0
Q ss_pred hHhhhhHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHH
Q 001390 791 VEAGNKVRQECLVSAI-------DKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQK 848 (1088)
Q Consensus 791 LesEK~eLE~rLq~~q-------ekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~ 848 (1088)
+..++.++-..++.+. .+-+.+..++..++...+.+..++..+...+..++++|.-.+
T Consensus 418 Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr 482 (518)
T PF10212_consen 418 YMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTR 482 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444 444445555555555555555555555555555555555444
No 256
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=73.24 E-value=1.3e+02 Score=36.64 Aligned_cols=46 Identities=33% Similarity=0.359 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhh
Q 001390 85 EKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVR 130 (1088)
Q Consensus 85 eKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~r 130 (1088)
+..-.|+.+++....+++..+...+.++..++.++|+|.+++...|
T Consensus 357 e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 357 ELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677788888888888888899999999999999999984444
No 257
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=73.16 E-value=83 Score=40.48 Aligned_cols=113 Identities=19% Similarity=0.211 Sum_probs=73.9
Q ss_pred hhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001390 787 EFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLN 866 (1088)
Q Consensus 787 eLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~ 866 (1088)
|+.-|++.-..+++.|++....++-++..-+++-..++.++.+-..+-+-+.+-+.+|.+-..+++. +...+++|+.
T Consensus 428 El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~---e~~rik~ev~ 504 (861)
T PF15254_consen 428 ELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDI---ETTRIKIEVE 504 (861)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHH
Confidence 5667777777888888888888888888888877777777777777777777777777777666643 3333455666
Q ss_pred HHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 001390 867 EACQKLSSLEVELEDKSNCCEELEATCLELQLQLES 902 (1088)
Q Consensus 867 qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr 902 (1088)
+...++.++.-.|+.-+....-|...+++...++.|
T Consensus 505 eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~R 540 (861)
T PF15254_consen 505 EALVNVKSLQFKLEASEKENQILGITLRQRDAEIER 540 (861)
T ss_pred HHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHH
Confidence 666655555555555444444444444444444444
No 258
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=72.73 E-value=2.2e+02 Score=34.23 Aligned_cols=66 Identities=24% Similarity=0.328 Sum_probs=42.2
Q ss_pred hHhHhhhHHHHHHHHhhcccchhHHHHhHH-HHHHHh-------------hhhHHHHHHHHHHHHHHHHHHhhhhhHHHh
Q 001390 46 ENDVKNLNDKLFSALAECNAKDDLVKKHAK-MAQEAI-------------TGREKAEAEVVSLKQELDAALQQRDTGEER 111 (1088)
Q Consensus 46 ~~~~k~l~ekLs~a~~~~~~kd~lvkqh~k-vaeeav-------------~GweKaEaE~~slKkqLe~~~qq~v~lEEr 111 (1088)
++....|.|-.+.-+-++ +++.--|-| |.--|. -|-+..+.++-+|..|++.+..+.-+++.-
T Consensus 244 Edq~~~LsE~~~k~~q~L---e~~~~~~~~~~P~t~~~~~~~~e~~~~~sD~~~~L~k~vQ~L~AQle~~R~q~e~~q~~ 320 (593)
T KOG4807|consen 244 EDQQNRLSEEIEKKWQEL---EKLPLRENKRVPLTALLNQSRGERRGPPSDGHEALEKEVQALRAQLEAWRLQGEAPQSA 320 (593)
T ss_pred HHHHHHHHHHHHHHHHHH---HhhhhhhcCCCCccccCCCccccccCCCCcchHHHHHHHHHHHHHHHHHHHhccCchhh
Confidence 666777777777666554 333333333 222222 377889999999999999988877555544
Q ss_pred hhh
Q 001390 112 LIH 114 (1088)
Q Consensus 112 vkh 114 (1088)
+..
T Consensus 321 ~~s 323 (593)
T KOG4807|consen 321 LRS 323 (593)
T ss_pred Hhh
Confidence 433
No 259
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.72 E-value=2.6e+02 Score=35.04 Aligned_cols=54 Identities=20% Similarity=0.259 Sum_probs=37.3
Q ss_pred HHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhhHHHHh
Q 001390 234 EEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEI 290 (1088)
Q Consensus 234 eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk~lpgpaa~a~mk~eve~ 290 (1088)
.+.+-.+|..++......-...-.+..|+-+..||.+=||-| -++-.||.+..-
T Consensus 521 ~alektkQel~~tkarl~stqqslaEke~HL~nLr~errk~L---ee~lemK~~a~k 574 (654)
T KOG4809|consen 521 NALEKTKQELDATKARLASTQQSLAEKEAHLANLRIERRKQL---EEILEMKKPAWK 574 (654)
T ss_pred HHHHHHhhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhhh
Confidence 344456666666666666666667777888888888888877 455567766554
No 260
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=72.52 E-value=1e+02 Score=33.26 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=6.9
Q ss_pred HHhhHHHHHHHHHhHHHHH
Q 001390 823 VSNSQNELDILKKSKEVIE 841 (1088)
Q Consensus 823 LeELksELesLeES~selE 841 (1088)
+.+-+.++..++..+..-+
T Consensus 73 ~~~~~~el~~~E~rl~~rE 91 (201)
T PF12072_consen 73 LKERRKELQRLEKRLQQRE 91 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 261
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=72.35 E-value=1.5e+02 Score=32.32 Aligned_cols=61 Identities=15% Similarity=0.272 Sum_probs=26.0
Q ss_pred HHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHH
Q 001390 202 NALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQ 265 (1088)
Q Consensus 202 ~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECq 265 (1088)
..|+.+++.+...-..|....+.++....+....-.. ....|-........+|..+|++-.
T Consensus 123 ~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~---~~~~a~~~fer~e~ki~~~ea~ae 183 (219)
T TIGR02977 123 AKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSG---RSDEAMARFEQYERRVDELEAQAE 183 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CchhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443333222221 123344444445555666665544
No 262
>PF14992 TMCO5: TMCO5 family
Probab=72.32 E-value=96 Score=35.67 Aligned_cols=115 Identities=19% Similarity=0.214 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhh----hHhhhHHHHHhhcchHHHHHHHhhHHHHHHHH
Q 001390 152 LMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRT----QAEADSNALMVRLDSTEKENASLKYEVRVLGK 227 (1088)
Q Consensus 152 ~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s----~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqk 227 (1088)
-.+-|..+.+++.+-++++-+|.+|++.++ +|..+.. .+.-+-..+.+.++..+.....+..++-.+++
T Consensus 58 ~~~~e~~l~~le~e~~~LE~~ne~l~~~~~-------elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ 130 (280)
T PF14992_consen 58 SEERETDLQELELETAKLEKENEHLSKSVQ-------ELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEK 130 (280)
T ss_pred hhchHHHHHHHHhhhHHHhhhhHhhhhhhh-------hhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHH
Confidence 334444455555555666666666764443 3333322 23333344555555555555555555555555
Q ss_pred HHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHh
Q 001390 228 ELEIRNEEREFNRRTADESHKQHLESVKKIAKLE--SECQRLRVLVRK 273 (1088)
Q Consensus 228 ELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLE--aECqRLr~l~rk 273 (1088)
++.-+...-....+.-+.+-.-..+..+++.+.| -|..-|...++|
T Consensus 131 ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~lLe~el~k 178 (280)
T PF14992_consen 131 EIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKEMLLLEKELSK 178 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544433222222222222222223334444444 444444455555
No 263
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=72.26 E-value=1.7e+02 Score=32.67 Aligned_cols=27 Identities=15% Similarity=0.107 Sum_probs=17.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001390 244 DESHKQHLESVKKIAKLESECQRLRVL 270 (1088)
Q Consensus 244 EaA~KQhlEsvKKIakLEaECqRLr~l 270 (1088)
+.+--.......||...|+.-.-.-.+
T Consensus 162 ~sa~~~fer~e~kiee~ea~a~~~~el 188 (225)
T COG1842 162 SSAMAAFERMEEKIEEREARAEAAAEL 188 (225)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 455556666777777777766555544
No 264
>PRK09343 prefoldin subunit beta; Provisional
Probab=71.84 E-value=1e+02 Score=31.00 Aligned_cols=36 Identities=17% Similarity=0.163 Sum_probs=16.5
Q ss_pred HHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Q 001390 868 ACQKLSSLEVELEDKSNCCEELEATCLELQLQLESV 903 (1088)
Q Consensus 868 lqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~ 903 (1088)
+..+++.++.++.......+.+..++.+++.+|..+
T Consensus 76 l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 76 LKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444445555555443
No 265
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=71.23 E-value=63 Score=37.41 Aligned_cols=55 Identities=16% Similarity=0.124 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 001390 797 VRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMIN 851 (1088)
Q Consensus 797 eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~l 851 (1088)
++...|.+..++....+.....+...-..|.=|++.|+..+.++++.+-.....+
T Consensus 81 ~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~ 135 (302)
T PF09738_consen 81 DLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREY 135 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666666666666666666555544333
No 266
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=71.18 E-value=1.5e+02 Score=32.04 Aligned_cols=77 Identities=21% Similarity=0.184 Sum_probs=46.7
Q ss_pred hhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001390 194 RTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVL 270 (1088)
Q Consensus 194 ~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l 270 (1088)
...+...+....+|..-+||++.-.+--|.-++.|....-+......+.-....-....-..|..+||.||-+|...
T Consensus 59 ~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~ 135 (178)
T PF14073_consen 59 NQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTAT 135 (178)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666677777777777777777777777665555443322221122222334447888999999999865
No 267
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=71.15 E-value=61 Score=35.58 Aligned_cols=36 Identities=22% Similarity=0.238 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhH
Q 001390 852 EDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCE 887 (1088)
Q Consensus 852 e~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lE 887 (1088)
+..+.+|.....+...+..|+..|+.|+...+..+.
T Consensus 69 E~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~ 104 (202)
T PF06818_consen 69 EVCENELQRKKNEAELLREKLGQLEAELAELREELA 104 (202)
T ss_pred HHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 333444444444445555555555555544444433
No 268
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=70.73 E-value=3.1e+02 Score=35.20 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHH
Q 001390 145 SMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRV 224 (1088)
Q Consensus 145 s~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~v 224 (1088)
..+++.++.++..+-.++...|.+.+..+..+.--...+++-+.-|..........++.....++.++.+|..|+-.+-.
T Consensus 547 rneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~a 626 (786)
T PF05483_consen 547 RNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITA 626 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777666554444444444555555555555555556666666666666667666666555
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHHHhHHH
Q 001390 225 LGKELEIRNEEREFNRRTADESHKQHLE 252 (1088)
Q Consensus 225 lqkELEIr~eEre~s~ksaEaA~KQhlE 252 (1088)
-.+.+..+...-+--..-.+.+.++|-|
T Consensus 627 E~kq~~~~eikVn~L~~E~e~~kk~~eE 654 (786)
T PF05483_consen 627 ESKQSNVYEIKVNKLQEELENLKKKHEE 654 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 5555444443333333333334444433
No 269
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=69.87 E-value=2.9e+02 Score=34.51 Aligned_cols=48 Identities=21% Similarity=0.403 Sum_probs=26.5
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHhcCCC-hHHHhhhhHHHH
Q 001390 242 TADESHKQHLESVKKIAKLESECQRL-RVLVRKRLPG-PAALAKMKNEVE 289 (1088)
Q Consensus 242 saEaA~KQhlEsvKKIakLEaECqRL-r~l~rk~lpg-paa~a~mk~eve 289 (1088)
.+-..+|.-++.......+-...... |.|-+..||| |--+-.|+....
T Consensus 404 ~L~~LrkdEl~Are~l~~~~~~l~eikR~mek~nLPGlPe~~l~l~~~~~ 453 (570)
T COG4477 404 HLTSLRKDELEARENLERLKSKLHEIKRYMEKSNLPGLPETFLSLFFTAG 453 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhhh
Confidence 33333444444444444444444444 4566778999 776666665544
No 270
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=69.59 E-value=97 Score=37.23 Aligned_cols=58 Identities=14% Similarity=0.038 Sum_probs=29.2
Q ss_pred hhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHH
Q 001390 788 FINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQK 848 (1088)
Q Consensus 788 LEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~ 848 (1088)
+..+..++.++......++..++.++.++. ..+..+...|+.-......+|+|++++.
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk~~~~---~e~~~~~~~LqEEr~R~erLEeqlNd~~ 271 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLKEQYQ---REYQFILEALQEERYRYERLEEQLNDLT 271 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 444555555555555555555555554432 2334444444444555555555555544
No 271
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.39 E-value=1.1e+02 Score=37.18 Aligned_cols=92 Identities=20% Similarity=0.163 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhcCCCCcccc----hhhhhhhhhhHhHHHHHh
Q 001390 856 TQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTKSGIPTDEL----KQDEKQIQTDWEIATASE 931 (1088)
Q Consensus 856 sqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~~~~~~~~~----~~e~~~~kqe~EIaaAAe 931 (1088)
.++...+.+-.+ ..+|.-++++++-....++....-...|-.+|++........... .-.+..-||+-+|..-.+
T Consensus 332 ~~l~~~e~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~ 410 (521)
T KOG1937|consen 332 EELKNLETEDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILE 410 (521)
T ss_pred HHHhcccchHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 333334444444 566666777777777777755566666667777654322111110 011233577778888888
Q ss_pred hHHHHHHHHHHHHHHHh
Q 001390 932 KLAECQETILNLGKQLK 948 (1088)
Q Consensus 932 KLAECQETI~~LGKQLK 948 (1088)
-=-|-|+-+-++|-+|.
T Consensus 411 etreLqkq~ns~se~L~ 427 (521)
T KOG1937|consen 411 ETRELQKQENSESEALN 427 (521)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88888888888888886
No 272
>PRK12704 phosphodiesterase; Provisional
Probab=69.12 E-value=3e+02 Score=34.29 Aligned_cols=9 Identities=11% Similarity=0.287 Sum_probs=3.8
Q ss_pred HHHHHHHHh
Q 001390 535 EILELILEQ 543 (1088)
Q Consensus 535 ~~l~~v~e~ 543 (1088)
.++..|...
T Consensus 398 ~v~~aI~~H 406 (520)
T PRK12704 398 VVINAIAAH 406 (520)
T ss_pred HHHHHHHHc
Confidence 344444443
No 273
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=68.52 E-value=70 Score=31.32 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=19.5
Q ss_pred HHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 001390 866 NEACQKLSSLEVELEDKSNCCEELEATCLELQLQLES 902 (1088)
Q Consensus 866 ~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr 902 (1088)
..+..++..++..+.........+..++.+++.+|..
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555543
No 274
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=68.51 E-value=92 Score=33.78 Aligned_cols=13 Identities=8% Similarity=0.261 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHh
Q 001390 813 MSQLQESQKIVSN 825 (1088)
Q Consensus 813 ksQLeElE~kLeE 825 (1088)
....+.++.++.+
T Consensus 109 ~e~~k~le~~~~~ 121 (190)
T PF05266_consen 109 LEERKKLEKKIEE 121 (190)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 275
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=68.09 E-value=28 Score=32.38 Aligned_cols=65 Identities=23% Similarity=0.353 Sum_probs=55.6
Q ss_pred HHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001390 203 ALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRK 273 (1088)
Q Consensus 203 ~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk 273 (1088)
+....++.+.|||-.||-.|+-++..+. ..+....+.+.++..+..-.+..|..|+++++.+++.
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~------~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~ 68 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQ------KLGPESIEELLKENIELKVEVESLKRELQEKKKLLKE 68 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH------hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778899999999999999999888 4455667888999999999999999999999988876
No 276
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=68.05 E-value=2.9e+02 Score=33.83 Aligned_cols=67 Identities=18% Similarity=0.200 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHhcCCChHHHhhhhHHHH
Q 001390 223 RVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRL----RVLVRKRLPGPAALAKMKNEVE 289 (1088)
Q Consensus 223 ~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRL----r~l~rk~lpgpaa~a~mk~eve 289 (1088)
+..++|++-..-|+++++.-++.+.-|.--+...|..+||-.+.| +...|.++|-.|.+-.|+.+.+
T Consensus 305 tas~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~ka~~~~~~~~l~ 375 (554)
T KOG4677|consen 305 TASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQTQIFRKHPRKASILNMPLVLT 375 (554)
T ss_pred hhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHhhhHhhhhhhchHHHH
Confidence 334444444444455554444444445555555555555544443 3455667777777777766544
No 277
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=67.89 E-value=43 Score=40.96 Aligned_cols=32 Identities=9% Similarity=0.075 Sum_probs=14.6
Q ss_pred chhhhhhHhhhhHHHHHHHHHHHhHHHHHHHH
Q 001390 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQL 816 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qekLE~lksQL 816 (1088)
.+++..++.++..++.++..+++++..+..++
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444333
No 278
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=67.84 E-value=25 Score=40.82 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=10.0
Q ss_pred chhhhhhHhhhhHHHHHHHHHHH
Q 001390 785 GSEFINVEAGNKVRQECLVSAID 807 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qe 807 (1088)
.+++++++.+....+..|..++.
T Consensus 220 ~~~l~~a~~~l~~~~~~L~~~~~ 242 (344)
T PF12777_consen 220 RQKLEEAEAELEEAEEQLAEKQA 242 (344)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 279
>PRK10869 recombination and repair protein; Provisional
Probab=67.38 E-value=1.8e+02 Score=36.22 Aligned_cols=89 Identities=16% Similarity=0.128 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhcCCCCcccchhhhhhhhhhHhHHHHHhhHHHHHHH-H--
Q 001390 864 DLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTKSGIPTDELKQDEKQIQTDWEIATASEKLAECQET-I-- 940 (1088)
Q Consensus 864 El~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~~~~~~~~~~~e~~~~kqe~EIaaAAeKLAECQET-I-- 940 (1088)
++..+++++..|..=..+=...++++.....+++.+|+.+..-+.......++- .+-..++-.+|.+|.+.-.. .
T Consensus 297 ~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~--~~l~~~l~~~A~~LS~~R~~aA~~ 374 (553)
T PRK10869 297 RLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAV--EKHHQQALETAQKLHQSRQRYAKE 374 (553)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555444333344666777777777888877665211111111111 11122334444555543322 2
Q ss_pred --HHHHHHHhhccCch
Q 001390 941 --LNLGKQLKALASPR 954 (1088)
Q Consensus 941 --~~LGKQLKaLa~~~ 954 (1088)
..+-++|+.|.-|.
T Consensus 375 l~~~v~~~L~~L~m~~ 390 (553)
T PRK10869 375 LAQLITESMHELSMPH 390 (553)
T ss_pred HHHHHHHHHHHcCCCC
Confidence 24556778887774
No 280
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=67.09 E-value=1.5e+02 Score=30.85 Aligned_cols=38 Identities=8% Similarity=-0.006 Sum_probs=22.6
Q ss_pred HHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Q 001390 866 NEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESV 903 (1088)
Q Consensus 866 ~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~ 903 (1088)
-.+..++.+...-|..++.-++....++.+|+.-+...
T Consensus 93 ~~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~ 130 (146)
T PF08702_consen 93 YILETKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQQ 130 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566666666666666666666665543
No 281
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=66.62 E-value=1.1e+02 Score=28.53 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=7.5
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 001390 800 ECLVSAIDKSNSLMSQLQES 819 (1088)
Q Consensus 800 ~rLq~~qekLE~lksQLeEl 819 (1088)
..++.+..++..+...+.+.
T Consensus 12 ~~~~~~~~~l~~L~~~~~~~ 31 (123)
T PF02050_consen 12 QELQEAEEQLEQLQQERQEY 31 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 282
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=66.58 E-value=1.9e+02 Score=33.32 Aligned_cols=54 Identities=6% Similarity=0.025 Sum_probs=22.3
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHH
Q 001390 794 GNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQ 847 (1088)
Q Consensus 794 EK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~ 847 (1088)
.+..++.++..++.+++..+..+...+..++.++.++..++..+..++.+++..
T Consensus 87 ~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~ 140 (346)
T PRK10476 87 TVAQAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLERL 140 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333333333333444444444444444444444443
No 283
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=65.99 E-value=52 Score=30.23 Aligned_cols=65 Identities=26% Similarity=0.280 Sum_probs=48.2
Q ss_pred HhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001390 197 AEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLR 268 (1088)
Q Consensus 197 ~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr 268 (1088)
.++++..|+.+|+.+..++. +.+.++..+..||+...+++..|.....+...++..|..|....|
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~-------~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNS-------VHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566677777777665554 445667777889999999999888888888888888887766655
No 284
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=65.94 E-value=1.9e+02 Score=30.78 Aligned_cols=108 Identities=11% Similarity=0.133 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHH-HHHH-------HHHH
Q 001390 797 VRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKV-ARVD-------LNEA 868 (1088)
Q Consensus 797 eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~e-leaE-------l~ql 868 (1088)
.++.-...+-.-.+..+..+..+..+|.+++.++...=.....++.........+-..+..|.. .+.+ .+.+
T Consensus 10 ~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~l 89 (159)
T PF05384_consen 10 TIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHEL 89 (159)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHH
Confidence 3333334444444555556666666666666666666666666655555555555444444421 1222 3334
Q ss_pred HHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhh
Q 001390 869 CQKLSSLEVELEDKSNCCEELEATCLELQLQLESVT 904 (1088)
Q Consensus 869 qeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e 904 (1088)
+-++..++.+-...+..-.+++.++..++.=+++.+
T Consensus 90 Q~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE 125 (159)
T PF05384_consen 90 QVRLAMLREREKQLRERRDELERRLRNLEETIERAE 125 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444455555555555555443
No 285
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=65.61 E-value=73 Score=36.99 Aligned_cols=22 Identities=18% Similarity=0.070 Sum_probs=15.1
Q ss_pred CcceeeeecccchhhHHHHHHH
Q 001390 655 SGYMVRVFQWKTSELSDILQQF 676 (1088)
Q Consensus 655 ~~~~~~~~~~k~sel~~~Le~f 676 (1088)
+|.+.-.|.+..+++...+=+.
T Consensus 130 s~ii~I~~~~~dP~~A~~ian~ 151 (362)
T TIGR01010 130 SGILTLNVTAFDAEEAQKINQR 151 (362)
T ss_pred CCeEEEEEEecCHHHHHHHHHH
Confidence 5555556888888877766553
No 286
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=65.49 E-value=1.3e+02 Score=32.97 Aligned_cols=89 Identities=15% Similarity=0.070 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHH
Q 001390 814 SQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATC 893 (1088)
Q Consensus 814 sQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc 893 (1088)
.++.+.|-.-..|..+..-++..+...+.....+...+.....+=........+.+.....|+.+...-+..+..+..++
T Consensus 98 ~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv 177 (192)
T PF11180_consen 98 ARLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQV 177 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555556666666667777777776666666666666666666666677777778888888888888888888888
Q ss_pred HHHHHHHHh
Q 001390 894 LELQLQLES 902 (1088)
Q Consensus 894 ~eLeeQLEr 902 (1088)
..|+.+.+.
T Consensus 178 ~~Lq~q~~~ 186 (192)
T PF11180_consen 178 RQLQRQANE 186 (192)
T ss_pred HHHHHHhcC
Confidence 888877663
No 287
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=65.07 E-value=83 Score=40.27 Aligned_cols=120 Identities=15% Similarity=0.097 Sum_probs=60.9
Q ss_pred chhhhhhHhhhhHHHHHHHHHHHhHHHH--HHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001390 785 GSEFINVEAGNKVRQECLVSAIDKSNSL--MSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVAR 862 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qekLE~l--ksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~ele 862 (1088)
.+.+..++.+....+.+++.+..+.... ..+.+..-.++.+|+.|+..++.....+...+.........+..+...++
T Consensus 273 ~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~~l~~~~~~L~ 352 (726)
T PRK09841 273 QRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYRALLEKRQTLE 352 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 5667777777777777777766543211 11222233445555555555554444444433333333333444444444
Q ss_pred HHHHHHHHH---HhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhh
Q 001390 863 VDLNEACQK---LSSLEVELEDKSNCCEELEATCLELQLQLESVT 904 (1088)
Q Consensus 863 aEl~qlqeK---VsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e 904 (1088)
.++..+..+ +-..+.++....+..+-.+.-+..+-.+.+...
T Consensus 353 ~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~ 397 (726)
T PRK09841 353 QERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELS 397 (726)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333 344555556666666666666666655555543
No 288
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=65.00 E-value=1.5e+02 Score=35.26 Aligned_cols=91 Identities=19% Similarity=0.240 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhh----------HHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001390 811 SLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINED----------LDTQLKVARVDLNEACQKLSSLEVELE 880 (1088)
Q Consensus 811 ~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~----------LesqL~eleaEl~qlqeKVsSLE~ELE 880 (1088)
.+..++..+..+|.+++..+..|+..+...+.-++.....++. -+.....+-.|+..+..-+..|...|.
T Consensus 262 ~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~ 341 (384)
T PF03148_consen 262 ELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLD 341 (384)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444443333311 011222344567777777777777777
Q ss_pred HhhhhhHHHHHHHHHHHHHHH
Q 001390 881 DKSNCCEELEATCLELQLQLE 901 (1088)
Q Consensus 881 ~er~~lEEl~aKc~eLeeQLE 901 (1088)
.-+..+..|......|+..|.
T Consensus 342 ~a~~~l~~L~~~~~~Le~di~ 362 (384)
T PF03148_consen 342 EAEASLQKLERTRLRLEEDIA 362 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777766
No 289
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=64.89 E-value=2e+02 Score=30.63 Aligned_cols=37 Identities=11% Similarity=0.196 Sum_probs=14.5
Q ss_pred hhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001390 787 EFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIV 823 (1088)
Q Consensus 787 eLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kL 823 (1088)
+++.++.++..+...+.....+...+....+.+...|
T Consensus 28 E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL 64 (159)
T PF05384_consen 28 EYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRL 64 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333333333333333333
No 290
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=64.88 E-value=32 Score=39.96 Aligned_cols=34 Identities=26% Similarity=0.245 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhH
Q 001390 854 LDTQLKVARVDLNEACQKLSSLEVELEDKSNCCE 887 (1088)
Q Consensus 854 LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lE 887 (1088)
++.+.......+.+...=+.+|..|...=...+.
T Consensus 268 l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~ 301 (344)
T PF12777_consen 268 LEEEIEETERKLERAEKLISGLSGEKERWSEQIE 301 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHH
T ss_pred HHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHH
Confidence 3333344444455555555666555444333333
No 291
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=64.84 E-value=3.5e+02 Score=35.87 Aligned_cols=123 Identities=18% Similarity=0.116 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhh
Q 001390 115 LDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQR 194 (1088)
Q Consensus 115 Ld~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~ 194 (1088)
|.+-|.+.+++| +.-...+.....+..++..++..+|.+.-.+..++.....| ++++..+|..-.
T Consensus 472 ls~el~el~k~l-----~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E----------~~~l~~el~~~~ 536 (913)
T KOG0244|consen 472 LSGELSELEKRL-----AEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESE----------RSRLRNELNVFN 536 (913)
T ss_pred hhHHHHHHHhhh-----ccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccc----------cHHHHHHHHhhh
Confidence 566666666666 22222222333333444555555555555555554444444 223333333333
Q ss_pred hhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001390 195 TQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVL 270 (1088)
Q Consensus 195 s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l 270 (1088)
..+-+-.+.-..+|..+|.+++.|+.-+....+-+. ++..+...+++|..|+++++..
T Consensus 537 ~~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~------------------~~~~~~~~~~kl~~ei~~~k~~ 594 (913)
T KOG0244|consen 537 RLAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIK------------------PKPKSEGIRAKLLQEIHIAKGQ 594 (913)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhc------------------cchhhHHHHHHHHHHHHHHHHH
Confidence 222222223345555555555555544333333332 2333444556677777766643
No 292
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=64.68 E-value=1.3e+02 Score=36.37 Aligned_cols=51 Identities=14% Similarity=0.247 Sum_probs=19.8
Q ss_pred HHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 001390 821 KIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQK 871 (1088)
Q Consensus 821 ~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeK 871 (1088)
+.+..|+.+++..++..+.+-.|+--+...++.+...+...++++++++..
T Consensus 13 qr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e 63 (459)
T KOG0288|consen 13 QRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEE 63 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333334444333333
No 293
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=64.66 E-value=3.5e+02 Score=33.44 Aligned_cols=76 Identities=8% Similarity=0.156 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHH
Q 001390 815 QLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELE 890 (1088)
Q Consensus 815 QLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~ 890 (1088)
.++.++.+...|+.-...++.....++.....--..++.++......+-++.-++.++++|...+.+.....++.+
T Consensus 296 ~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe 371 (622)
T COG5185 296 KIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFE 371 (622)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHH
Confidence 3344444444444444444433333333333333334555666666666666666666666666666655555443
No 294
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=64.43 E-value=4.1e+02 Score=34.22 Aligned_cols=127 Identities=24% Similarity=0.270 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH------hHHHHHHHHHHHHHH
Q 001390 86 KAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKA------SMEFEQSLMILEEKL 159 (1088)
Q Consensus 86 KaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kk------s~E~Ek~~~eLE~kL 159 (1088)
.+..+..+|.+.|.++..-.-....--..|..-|.-+++.+-++.++.+..+-+-...+ ..++.-....|+.=|
T Consensus 286 es~~~qe~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL 365 (786)
T PF05483_consen 286 ESNEEQEHLLQELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELL 365 (786)
T ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666555433333333344555566666666666666665554433322 223333333444444
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHH
Q 001390 160 AETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTE 212 (1088)
Q Consensus 160 ~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~E 212 (1088)
.-=+.++.+.+.....|..-|+.|+.-++++...+..-+-+++.|+.-|+.-+
T Consensus 366 ~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~q 418 (786)
T PF05483_consen 366 TTEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKILAEKQ 418 (786)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 44444677777777778888999999999988888877777777777766655
No 295
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=64.09 E-value=1.1e+02 Score=35.00 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=40.6
Q ss_pred hHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHH
Q 001390 791 VEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLK 859 (1088)
Q Consensus 791 LesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~ 859 (1088)
++.-+..+...++..+..+..+......++.+|+.-+.+|+-.++.++.+..=-...-..|+.++.+|.
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~ 235 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQ 235 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 555556666666666666666666666666666666666666666666665443333334444444433
No 296
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=64.05 E-value=1.6e+02 Score=33.26 Aligned_cols=55 Identities=13% Similarity=0.095 Sum_probs=24.6
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHH
Q 001390 794 GNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQK 848 (1088)
Q Consensus 794 EK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~ 848 (1088)
.+...+..+..++.++..+...+..++.++..++.+++.++..+..++.+++...
T Consensus 81 ~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~ 135 (334)
T TIGR00998 81 ALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRV 135 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3333444444444444444444444444444444444444444444444444443
No 297
>PLN03188 kinesin-12 family protein; Provisional
Probab=63.56 E-value=5.5e+02 Score=35.38 Aligned_cols=45 Identities=27% Similarity=0.327 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHh
Q 001390 82 TGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQL 126 (1088)
Q Consensus 82 ~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQL 126 (1088)
.-|-+||-+-.+|..+|..-..-...|-|++.+-=..=|+|...|
T Consensus 1054 ~~w~e~es~wislteelr~eles~r~l~Ekl~~EL~~eK~c~eel 1098 (1320)
T PLN03188 1054 LRWTEAESKWISLAEELRTELDASRALAEKQKHELDTEKRCAEEL 1098 (1320)
T ss_pred HHHHHHhhhheechHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 458889988888888886666668889999988888888888877
No 298
>PF15456 Uds1: Up-regulated During Septation
Probab=63.42 E-value=1e+02 Score=31.35 Aligned_cols=40 Identities=23% Similarity=0.320 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhh
Q 001390 89 AEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFV 129 (1088)
Q Consensus 89 aE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~ 129 (1088)
.||..||+++..+....-.++.++. +..+++..-..|..+
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l 61 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRL 61 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 4788999999998888888888888 777777766666444
No 299
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=62.76 E-value=3.6e+02 Score=33.22 Aligned_cols=136 Identities=18% Similarity=0.135 Sum_probs=0.0
Q ss_pred hhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHh-------hhHHHHH
Q 001390 786 SEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMIN-------EDLDTQL 858 (1088)
Q Consensus 786 eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~l-------e~LesqL 858 (1088)
|+-=++--+|.++++.++..+.-+..++..|++....-+.|+-++...+...-.+++.+...-++. -.++.-|
T Consensus 376 edKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~L 455 (527)
T PF15066_consen 376 EDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTL 455 (527)
T ss_pred HhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHhhHHHHH----HHhhhhhHHHHHHHHHHHHHHHhhhcCCCCcccchhhhhhhhhhHhHHHHHhhH
Q 001390 859 KVARVDLNEACQKLSSLEVEL----EDKSNCCEELEATCLELQLQLESVTKSGIPTDELKQDEKQIQTDWEIATASEKL 933 (1088)
Q Consensus 859 ~eleaEl~qlqeKVsSLE~EL----E~er~~lEEl~aKc~eLeeQLEr~e~~~~~~~~~~~e~~~~kqe~EIaaAAeKL 933 (1088)
...+-++.+++.-..-|++-. +-.++.-+..+.+..-|++++++.++ ..+..--.+-+--+||
T Consensus 456 skKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ek------------enl~ERqkLKs~leKL 522 (527)
T PF15066_consen 456 SKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEK------------ENLEERQKLKSRLEKL 522 (527)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hhHHHHHHHHHHHHHH
No 300
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.69 E-value=3.6e+02 Score=35.07 Aligned_cols=20 Identities=25% Similarity=0.296 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 001390 153 MILEEKLAETSKRLAKLGVE 172 (1088)
Q Consensus 153 ~eLE~kL~El~k~L~k~~aE 172 (1088)
+.+..+|++++++|+.+..-
T Consensus 670 ~Sa~rqIael~~~lE~L~~t 689 (1104)
T COG4913 670 PSAQRQIAELQARLERLTHT 689 (1104)
T ss_pred hhHHHHHHHHHHHHHHhcCC
Confidence 34567888888887776654
No 301
>PLN02939 transferase, transferring glycosyl groups
Probab=62.62 E-value=5.2e+02 Score=34.77 Aligned_cols=116 Identities=24% Similarity=0.210 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------H
Q 001390 90 EVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAE-------T 162 (1088)
Q Consensus 90 E~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~E-------l 162 (1088)
++...-.+.++++.+.-.|+-|++.-|..+|=..+ .+++--+.. .++++++.+|-...+. +
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 224 (977)
T PLN02939 157 DLEKILTEKEALQGKINILEMRLSETDARIKLAAQ----------EKIHVEILE--EQLEKLRNELLIRGATEGLCVHSL 224 (977)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhh----------ccccchhhH--HHHHHHhhhhhccccccccccccH
Confidence 34444444555566666666676666666654332 222222332 4455556555544444 5
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHH
Q 001390 163 SKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKE 228 (1088)
Q Consensus 163 ~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkE 228 (1088)
..+|..++.||..|...+ .-||.+...+ .+...++--++||.+-|+.-+..++..
T Consensus 225 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (977)
T PLN02939 225 SKELDVLKEENMLLKDDI-------QFLKAELIEV----AETEERVFKLEKERSLLDASLRELESK 279 (977)
T ss_pred HHHHHHHHHHhHHHHHHH-------HHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777775555322 3333333321 112234444555555555555444443
No 302
>PRK01156 chromosome segregation protein; Provisional
Probab=62.08 E-value=4.8e+02 Score=34.17 Aligned_cols=45 Identities=13% Similarity=0.140 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001390 857 QLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLE 901 (1088)
Q Consensus 857 qL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLE 901 (1088)
.+..++.++..+..++..+..++......++++..++..++.+++
T Consensus 675 ~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~ 719 (895)
T PRK01156 675 RINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRIN 719 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 334444444444444444444444444444444444434444433
No 303
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=61.79 E-value=68 Score=31.79 Aligned_cols=64 Identities=31% Similarity=0.323 Sum_probs=35.8
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHH
Q 001390 167 AKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELE 230 (1088)
Q Consensus 167 ~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELE 230 (1088)
.++++.|..|-+++.+=..--.+|++.+-.-++.+-.++++++++.=.|..|--.+.+++.|++
T Consensus 8 sKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 8 SKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544444444455555555555555566666666666666666666666665
No 304
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=61.41 E-value=5.4e+02 Score=34.57 Aligned_cols=28 Identities=11% Similarity=0.076 Sum_probs=15.7
Q ss_pred hhhhhhHhhhhHHHHHHHHHHHhHHHHH
Q 001390 786 SEFINVEAGNKVRQECLVSAIDKSNSLM 813 (1088)
Q Consensus 786 eeLEqLesEK~eLE~rLq~~qekLE~lk 813 (1088)
.-+..++.....+...++.|....++.+
T Consensus 773 ~~i~~~~~~~~~lk~a~~~~k~~a~~~~ 800 (1072)
T KOG0979|consen 773 DNISFLEAREDLLKTALEDKKKEAAEKR 800 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445555555666666666665555444
No 305
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=61.32 E-value=1.4e+02 Score=37.54 Aligned_cols=177 Identities=16% Similarity=0.137 Sum_probs=74.3
Q ss_pred chhhhhhHhhhhHHHHHHHHHHHhHHHHH---------HHHHHHHHHHH---hhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 001390 785 GSEFINVEAGNKVRQECLVSAIDKSNSLM---------SQLQESQKIVS---NSQNELDILKKSKEVIEDQVKLQKMINE 852 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qekLE~lk---------sQLeElE~kLe---ELksELesLeES~selEeQLk~~~e~le 852 (1088)
.++|.+-...+.+.+.-.+.++.-++.+. ..+..+...|. +.-..+..+.+.++++..++.+....++
T Consensus 207 ~e~L~~e~~rLsn~ekl~~~~~~a~~~L~ge~~~~~~~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~ 286 (557)
T COG0497 207 DEELEEERKRLSNSEKLAEAIQNALELLSGEDDTVSALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELR 286 (557)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666665555555443 22222222221 2222333333333333333333333332
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhcCCCCcccchhhhhhhhhhHhHHHHHhh
Q 001390 853 DLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTKSGIPTDELKQDEKQIQTDWEIATASEK 932 (1088)
Q Consensus 853 ~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~~~~~~~~~~~e~~~~kqe~EIaaAAeK 932 (1088)
..-..+..--.++....+++..|..=-.+-....+++.+...+++.+|..+............+-..++++ +..||.+
T Consensus 287 ~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~--~~~~A~~ 364 (557)
T COG0497 287 AYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAE--LLEAAEA 364 (557)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH--HHHHHHH
Confidence 22222222222333444444444433333344455566666666666665554222111222222233332 2233333
Q ss_pred HHHHHHHHH-----HHHHHHhhccCchhhhcccccccc
Q 001390 933 LAECQETIL-----NLGKQLKALASPREAALFDKVIHT 965 (1088)
Q Consensus 933 LAECQETI~-----~LGKQLKaLa~~~e~~~~d~~~~~ 965 (1088)
|..-....+ .+-..||.|+-+. +-|.-.+.+
T Consensus 365 Ls~~R~~~A~~L~~~v~~eL~~L~Me~--a~F~ve~~~ 400 (557)
T COG0497 365 LSAIRKKAAKELEKEVTAELKALAMEK--ARFTVELKP 400 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCC--ceEEEEecc
Confidence 332222111 2445677787663 445544444
No 306
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=60.78 E-value=2.4e+02 Score=34.00 Aligned_cols=78 Identities=13% Similarity=0.216 Sum_probs=33.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHH----HHHHHHHHHHHhhHH
Q 001390 801 CLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVA----RVDLNEACQKLSSLE 876 (1088)
Q Consensus 801 rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~el----eaEl~qlqeKVsSLE 876 (1088)
.+..+.+++.+++.....++..++.|+.++ +..+..+.+.|.+..-.++-|++++|++ ..|+..+.+-+...+
T Consensus 213 ~l~~~~~el~eik~~~~~L~~~~e~Lk~~~---~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~E 289 (395)
T PF10267_consen 213 GLQKILEELREIKESQSRLEESIEKLKEQY---QREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASME 289 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344444444444444444444444444432 2223344444444444444455555442 233333444444444
Q ss_pred HHHHH
Q 001390 877 VELED 881 (1088)
Q Consensus 877 ~ELE~ 881 (1088)
..++|
T Consensus 290 EK~~Y 294 (395)
T PF10267_consen 290 EKMAY 294 (395)
T ss_pred HHHHH
Confidence 44444
No 307
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=60.71 E-value=1.9e+02 Score=35.87 Aligned_cols=101 Identities=14% Similarity=0.091 Sum_probs=55.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 001390 805 AIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSN 884 (1088)
Q Consensus 805 ~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~ 884 (1088)
|-.++-.+..+..-+...|....+++..+++.++.+..+|-....+...+.-+-+++-.-+......-..++.|++...-
T Consensus 203 ~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleD 282 (596)
T KOG4360|consen 203 CVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELED 282 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33334444445555555555555555556666666666555555555444444444444444444445556666666666
Q ss_pred hhHHHHHHHHHHHHHHHhhhc
Q 001390 885 CCEELEATCLELQLQLESVTK 905 (1088)
Q Consensus 885 ~lEEl~aKc~eLeeQLEr~e~ 905 (1088)
...|...-..+-+++|.....
T Consensus 283 kyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 283 KYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 666666666666666665443
No 308
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=60.67 E-value=3.3e+02 Score=35.68 Aligned_cols=105 Identities=22% Similarity=0.206 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHH-HhhHHHHHHHHHHHHHHHH
Q 001390 157 EKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENA-SLKYEVRVLGKELEIRNEE 235 (1088)
Q Consensus 157 ~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~-sLKyEl~vlqkELEIr~eE 235 (1088)
.+|.+++..|.+ .|-+..++++.++-..+.++.=.+..+++++.+.++|..++...- .++-++.+ ..+-++-.++
T Consensus 929 qei~Eleailek---QNca~eeakqn~eis~Ed~kkLhaE~daeLe~~~ael~eleqk~le~~eDea~a-Rh~kefE~~m 1004 (1424)
T KOG4572|consen 929 QEIEELEAILEK---QNCAHEEAKQNDEISEEDKKKLHAEIDAELEKEFAELIELEQKALECKEDEAFA-RHEKEFEIEM 1004 (1424)
T ss_pred HHHHHHHHHHHh---hhhhHHHHhhcCcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHH
Confidence 345555554433 344456677777777777777777777777766666666654332 22222222 2222333333
Q ss_pred HHHhHHhHHHHHHhHHHHHHHHHHHHHHHHH
Q 001390 236 REFNRRTADESHKQHLESVKKIAKLESECQR 266 (1088)
Q Consensus 236 re~s~ksaEaA~KQhlEsvKKIakLEaECqR 266 (1088)
+..+ -+.+.-+|....+...|..+++|+..
T Consensus 1005 rdhr-selEe~kKe~eaiineiee~eaeIiQ 1034 (1424)
T KOG4572|consen 1005 RDHR-SELEEKKKELEAIINEIEELEAEIIQ 1034 (1424)
T ss_pred HHhH-hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4433 23455566666666666666666543
No 309
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=60.49 E-value=1.4e+02 Score=36.18 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhHHhH
Q 001390 225 LGKELEIRNEEREFNRRTA 243 (1088)
Q Consensus 225 lqkELEIr~eEre~s~ksa 243 (1088)
-+.++.-++-+++|+..+.
T Consensus 244 ~~del~Sle~q~~~s~~ql 262 (447)
T KOG2751|consen 244 HQDELDSLEAQIEYSQAQL 262 (447)
T ss_pred ccchHHHHHHHHHHHHHHH
Confidence 3444555555555555443
No 310
>PRK11519 tyrosine kinase; Provisional
Probab=59.88 E-value=1.4e+02 Score=38.14 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=12.2
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHH
Q 001390 873 SSLEVELEDKSNCCEELEATCLELQ 897 (1088)
Q Consensus 873 sSLE~ELE~er~~lEEl~aKc~eLe 897 (1088)
..|+.+.+-.+..+..+..|.+++.
T Consensus 373 ~~L~Re~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 373 VRLTRDVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444455555555555543
No 311
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=59.43 E-value=1.9e+02 Score=34.06 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=7.0
Q ss_pred HhhhhhHHHHHHHHH
Q 001390 881 DKSNCCEELEATCLE 895 (1088)
Q Consensus 881 ~er~~lEEl~aKc~e 895 (1088)
.++..+..++.|.++
T Consensus 198 kRQ~yI~~LEsKVqD 212 (401)
T PF06785_consen 198 KRQAYIGKLESKVQD 212 (401)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444555544
No 312
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=58.79 E-value=5.6e+02 Score=33.88 Aligned_cols=14 Identities=21% Similarity=0.283 Sum_probs=5.4
Q ss_pred hhHHHHHHHHHHHH
Q 001390 83 GREKAEAEVVSLKQ 96 (1088)
Q Consensus 83 GweKaEaE~~slKk 96 (1088)
.|+..+.....+..
T Consensus 233 e~e~l~~~~~el~~ 246 (908)
T COG0419 233 EIEALEERLAELEE 246 (908)
T ss_pred HHHHHHHHHHHHHH
Confidence 34443333333333
No 313
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=58.58 E-value=2e+02 Score=29.39 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=19.8
Q ss_pred HHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Q 001390 867 EACQKLSSLEVELEDKSNCCEELEATCLELQLQLESV 903 (1088)
Q Consensus 867 qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~ 903 (1088)
++..+++.|+..+.-.+++-+.+..++.+|+..|-.+
T Consensus 74 eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 74 ELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555543
No 314
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=58.46 E-value=1.9e+02 Score=31.28 Aligned_cols=65 Identities=11% Similarity=0.114 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHH--HHHHHhHHHHHHHHHHHHHHhhhHHHHHH
Q 001390 795 NKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNEL--DILKKSKEVIEDQVKLQKMINEDLDTQLK 859 (1088)
Q Consensus 795 K~eLE~rLq~~qekLE~lksQLeElE~kLeELksEL--esLeES~selEeQLk~~~e~le~LesqL~ 859 (1088)
...+.+.+..++++...++..+..++-+|.+|.+-| ..++++++.+......+.+.+..+.+-.+
T Consensus 81 l~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~ 147 (201)
T KOG4603|consen 81 LQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTN 147 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344455555566666666666666666666666654 34566666666666666655555544433
No 315
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=58.45 E-value=2.9e+02 Score=30.44 Aligned_cols=37 Identities=24% Similarity=0.388 Sum_probs=21.2
Q ss_pred HHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhc
Q 001390 869 CQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTK 905 (1088)
Q Consensus 869 qeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~ 905 (1088)
-.++..|+..+...-...-+++.-|..|+.++.+.+.
T Consensus 174 ~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~ 210 (221)
T PF05700_consen 174 GEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKR 210 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555666666666666665543
No 316
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=58.36 E-value=1.5e+02 Score=38.60 Aligned_cols=75 Identities=20% Similarity=0.242 Sum_probs=38.4
Q ss_pred HHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHH-HHHHHHHHHHhHHhHHHHHHhHHHHHHHHHH
Q 001390 185 KLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKE-LEIRNEEREFNRRTADESHKQHLESVKKIAK 259 (1088)
Q Consensus 185 ~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkE-LEIr~eEre~s~ksaEaA~KQhlEsvKKIak 259 (1088)
++|.+|..++..++.....+...++..++....|+.+...+.++ -.++.+.++-..+.+..|.++..+..+++.+
T Consensus 520 ~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 520 ELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555444444333 3344444444555555555555555555543
No 317
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=58.16 E-value=6.8e+02 Score=34.66 Aligned_cols=268 Identities=15% Similarity=0.106 Sum_probs=0.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 001390 80 AITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKL 159 (1088)
Q Consensus 80 av~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL 159 (1088)
+.+-|-||..-+..+++....--+-.-.-=+.++-+...-......+ .+.++..+.......+++....+.++++
T Consensus 179 ~~tky~KAld~~kk~rkd~~~evk~~~~~l~~lk~~K~~~e~~~l~i-----~~~~~ki~~~ke~v~e~e~e~~~~~~~i 253 (1294)
T KOG0962|consen 179 SATKYTKALDSLKKLRKDQSQEVKTKKQELEHLKTLKERAEVLRLNI-----HSGQRKIEKSKEEVSELENELGPIEAKI 253 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcc-hHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001390 160 AETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLD-STEKENASLKYEVRVLGKELEIRNEEREF 238 (1088)
Q Consensus 160 ~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE-~~EKEn~sLKyEl~vlqkELEIr~eEre~ 238 (1088)
.+..+.+...+.. ..-+..|..+......++..++..+. ..+.-.-.|.-.++--++.+.-..+.+..
T Consensus 254 ~ei~~~~~el~k~-----------~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~ 322 (1294)
T KOG0962|consen 254 EEIEKSLKELEKL-----------LKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEERLEEMGEKLRE 322 (1294)
T ss_pred HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHHHHHHHHHhHHH
Q ss_pred hHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhhHHHHhhcCCChhhhhccCCCCCCCcccccCCCC
Q 001390 239 NRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRESPETRRKRLNSSPLGSMVDSAFDN 318 (1088)
Q Consensus 239 s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk~lpgpaa~a~mk~eve~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 318 (1088)
..+-+..+..+.......-+++.-+..++.+.+ ....+.++.++++++..+-.-.-....+.. .
T Consensus 323 ~e~~~~~l~~e~~~l~~~k~~~~~~~~~lq~e~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~ 386 (1294)
T KOG0962|consen 323 LEREISDLNEERSSLIQLKTELDLEQSELQAEA-------EFHQELKRQRDSLIQELAHQYQLDSVESLE---------F 386 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhcccccc---------h
Q ss_pred CCCCCcchhhhHHHHHHHhHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhHHHHHHHHh
Q 001390 319 PPDTPSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQIEEL 379 (1088)
Q Consensus 319 ~~~~~~~~~~~l~~rl~~~eeEnk~lke~L~~k~~ELq~sr~~~a~t~skL~~~e~q~~~~ 379 (1088)
+.+.-.--.++.+++.+.+++-.++++...+.+...+.--|.-.-+...-+......-.++
T Consensus 387 ~~~v~~~~~~~i~~~~~~~~~~~~q~~k~~~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~ 447 (1294)
T KOG0962|consen 387 MAEVKKDFRNLILERFGGLEDDIKQRKKDIAELETNALDLIKEITDREVSLEAQKRIKDEI 447 (1294)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 318
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=57.68 E-value=90 Score=38.23 Aligned_cols=34 Identities=26% Similarity=0.274 Sum_probs=16.9
Q ss_pred HHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhh
Q 001390 871 KLSSLEVELEDKSNCCEELEATCLELQLQLESVT 904 (1088)
Q Consensus 871 KVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e 904 (1088)
++..+..++......++++..++.+++.+|..+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 139 EIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444444444455555555555555555443
No 319
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=57.63 E-value=1.6e+02 Score=28.45 Aligned_cols=37 Identities=22% Similarity=0.341 Sum_probs=19.4
Q ss_pred HHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 001390 866 NEACQKLSSLEVELEDKSNCCEELEATCLELQLQLES 902 (1088)
Q Consensus 866 ~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr 902 (1088)
..+..++..++.++......+..+..++.+++.+|..
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555543
No 320
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=57.59 E-value=1.5e+02 Score=34.49 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=9.1
Q ss_pred HhhhHHHHHHHHHHHHHHH
Q 001390 850 INEDLDTQLKVARVDLNEA 868 (1088)
Q Consensus 850 ~le~LesqL~eleaEl~ql 868 (1088)
.+..++.++..+++++..+
T Consensus 215 ~i~~L~~~l~~~~~~l~~l 233 (362)
T TIGR01010 215 LISTLEGELIRVQAQLAQL 233 (362)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554444
No 321
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=57.25 E-value=60 Score=29.33 Aligned_cols=49 Identities=31% Similarity=0.405 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHH
Q 001390 180 LLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIR 232 (1088)
Q Consensus 180 l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr 232 (1088)
+.+|..+-++|+ .+.+.--.+..+|...++.|.+|..+|..+.++++-+
T Consensus 10 irakQ~~~eEL~----kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 10 IRAKQAIQEELT----KVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555554 3444445678899999999999999999999888543
No 322
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=57.24 E-value=2.4e+02 Score=29.09 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=29.2
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhcC
Q 001390 873 SSLEVELEDKSNCCEELEATCLELQLQLESVTKS 906 (1088)
Q Consensus 873 sSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~~ 906 (1088)
...+.|+++.=-++.++..|+..++.+|..+...
T Consensus 80 ~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~e 113 (136)
T PF04871_consen 80 KEAQSELDDLLVLLGDLEEKRKKYKERLKELGEE 113 (136)
T ss_pred HhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCC
Confidence 5678889999999999999999999999987664
No 323
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.07 E-value=5e+02 Score=32.78 Aligned_cols=129 Identities=23% Similarity=0.278 Sum_probs=86.8
Q ss_pred hhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------Hhhhhhh
Q 001390 104 QRDTGEERLIHLDAALKECMDQLHFVREEQEQRI--HDAVMKASMEFEQSLMILEEKLAETSKRLA-------KLGVENT 174 (1088)
Q Consensus 104 q~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki--~da~~kks~E~Ek~~~eLE~kL~El~k~L~-------k~~aEn~ 174 (1088)
+-..|-.+|-.|..-||.+...|-.+++|.+.-. |...-......|..+..|...|-+..-+=. .++.||-
T Consensus 101 kE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENI 180 (772)
T KOG0999|consen 101 KEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENI 180 (772)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344556788888899999999989998888533 333333345566677777777777755432 3344443
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhH
Q 001390 175 HLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQH 250 (1088)
Q Consensus 175 ~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQh 250 (1088)
.|. ...+.+ ..-|.+++.+.-+|..|.-++..+...++-...=++.+.+.++.|=.-.
T Consensus 181 sLQ--------------KqVs~L----R~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTl 238 (772)
T KOG0999|consen 181 SLQ--------------KQVSNL----RQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETL 238 (772)
T ss_pred hHH--------------HHHHHH----hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 222222 2337788888899999999999888888877777888888887775433
No 324
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=56.86 E-value=4.9e+02 Score=32.58 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=35.4
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 001390 210 STEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGP 278 (1088)
Q Consensus 210 ~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk~lpgp 278 (1088)
.-+.++..++.||-.+-.-+.++.+.-.- ++ + +.=...+. ..-|.|||.-++--+...-+|+-.-
T Consensus 452 ~R~~eV~~vRqELa~lLssvQ~~~e~~~~-rk-i-aeiqg~l~-~~qi~kle~siq~nKtiqn~kfntE 516 (531)
T PF15450_consen 452 AREREVGAVRQELATLLSSVQLLKEDNPG-RK-I-AEIQGKLA-TNQIMKLENSIQTNKTIQNLKFNTE 516 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChh-hh-H-HHHHHHHH-HHHHHHHHHHHHHHHHHHhcccchH
Confidence 34455555666665555555555443222 11 1 11122222 5667788888888888887777433
No 325
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=56.80 E-value=1.4e+02 Score=27.76 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=14.6
Q ss_pred HHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 001390 818 ESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINE 852 (1088)
Q Consensus 818 ElE~kLeELksELesLeES~selEeQLk~~~e~le 852 (1088)
+-+.+|+.|..+-+.|....-...+.++.+...+.
T Consensus 9 EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~ 43 (74)
T PF12329_consen 9 EKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIK 43 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33344444444444444444444444444433333
No 326
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=56.78 E-value=1.3e+02 Score=36.54 Aligned_cols=116 Identities=19% Similarity=0.124 Sum_probs=74.5
Q ss_pred hhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001390 788 FINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNE 867 (1088)
Q Consensus 788 LEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~q 867 (1088)
+..|.++...++.+.+.++.-++.+..+-+.. ..+++..+++.+.++-..+..+++.....-.++...+.+.+.+..+
T Consensus 145 ~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~--~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~ 222 (447)
T KOG2751|consen 145 LNKLDKEVEDAEDEVDTYKACLQRLEQQNQDV--SEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAER 222 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666665555554443 5677777788888888888888888777777777777777777666
Q ss_pred HHHHHhhHHHHHHHh-------hhhhHHHHHHHHHHHHHHHhhhc
Q 001390 868 ACQKLSSLEVELEDK-------SNCCEELEATCLELQLQLESVTK 905 (1088)
Q Consensus 868 lqeKVsSLE~ELE~e-------r~~lEEl~aKc~eLeeQLEr~e~ 905 (1088)
+.++-..+-.+.-.- ...+..+..+++-.+.|+..+..
T Consensus 223 ~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~k 267 (447)
T KOG2751|consen 223 LNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRK 267 (447)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHh
Confidence 666655544433221 22334666777777777776554
No 327
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=56.41 E-value=3.7e+02 Score=31.03 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHHhhhhcC
Q 001390 667 SELSDILQQFVHACYGVLNK 686 (1088)
Q Consensus 667 sel~~~Le~f~~~c~~~L~g 686 (1088)
++++.+|+++++.-+.|+..
T Consensus 53 pe~sr~L~~LIk~EK~vi~s 72 (271)
T PF13805_consen 53 PELSRKLQRLIKAEKSVIRS 72 (271)
T ss_dssp -TTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHH
Confidence 59999999999999988865
No 328
>PRK11519 tyrosine kinase; Provisional
Probab=56.34 E-value=1.4e+02 Score=38.31 Aligned_cols=120 Identities=12% Similarity=0.075 Sum_probs=60.5
Q ss_pred chhhhhhHhhhhHHHHHHHHHHHhHHH--HHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001390 785 GSEFINVEAGNKVRQECLVSAIDKSNS--LMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVAR 862 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qekLE~--lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~ele 862 (1088)
.+.+..++.+....+.+++.++.+-.. +..+.+..-..+.+++.++..++.....+...+......+..+..+...++
T Consensus 273 ~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP~v~~l~~~~~~L~ 352 (719)
T PRK11519 273 AQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAYRTLLEKRKALE 352 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence 566777777777777777766654322 122233333444555555555544444444333332223333444444444
Q ss_pred HHHHHHHHHHhh---HHHHHHHhhhhhHHHHHHHHHHHHHHHhhh
Q 001390 863 VDLNEACQKLSS---LEVELEDKSNCCEELEATCLELQLQLESVT 904 (1088)
Q Consensus 863 aEl~qlqeKVsS---LE~ELE~er~~lEEl~aKc~eLeeQLEr~e 904 (1088)
.++..+..++.. .+.++....+..+-...-+..+-.+++...
T Consensus 353 ~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 353 DEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444333 444555555555555666666666666543
No 329
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=56.22 E-value=1.9e+02 Score=33.17 Aligned_cols=12 Identities=33% Similarity=0.473 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhh
Q 001390 533 LQEILELILEQN 544 (1088)
Q Consensus 533 lq~~l~~v~e~~ 544 (1088)
+-++|+.||++|
T Consensus 98 ~~silq~If~KH 109 (269)
T PF05278_consen 98 QVSILQKIFEKH 109 (269)
T ss_pred HHHHHHHHHHhC
Confidence 345666666663
No 330
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.93 E-value=1.4e+02 Score=27.80 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhH
Q 001390 852 EDLDTQLKVARVDLNEACQKLSSL 875 (1088)
Q Consensus 852 e~LesqL~eleaEl~qlqeKVsSL 875 (1088)
+.+..+-..++.+.+.-++++.+|
T Consensus 49 eaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 49 EALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445555555555444
No 331
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=55.90 E-value=2.4e+02 Score=30.44 Aligned_cols=70 Identities=13% Similarity=0.178 Sum_probs=35.3
Q ss_pred hHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 001390 200 DSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPA 279 (1088)
Q Consensus 200 ei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk~lpgpa 279 (1088)
+...+..+|+.+++++..|+.++..... .....++.-.+........+.+-..-+--|+.-++++++++.
T Consensus 104 eR~~~l~~l~~l~~~~~~l~~el~~~~~----------~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~k~~~~~ 173 (188)
T PF03962_consen 104 EREELLEELEELKKELKELKKELEKYSE----------NDPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLKKKFGMDE 173 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCH
Confidence 3444556666666666666665552221 222233333333333333344444445556667777777664
No 332
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=55.81 E-value=84 Score=30.87 Aligned_cols=52 Identities=8% Similarity=0.063 Sum_probs=27.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhh--HHHHHHHHHhHHHHHHHHHHHHHHhhhH
Q 001390 803 VSAIDKSNSLMSQLQESQKIVSNS--QNELDILKKSKEVIEDQVKLQKMINEDL 854 (1088)
Q Consensus 803 q~~qekLE~lksQLeElE~kLeEL--ksELesLeES~selEeQLk~~~e~le~L 854 (1088)
....+.+.....++..+|++++.| ...+..++-.+.+++..++.+...++.+
T Consensus 38 ~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 38 EKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333344444455555555555555 5555555555555555555555555444
No 333
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=55.67 E-value=5.2e+02 Score=32.52 Aligned_cols=275 Identities=19% Similarity=0.200 Sum_probs=152.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001390 84 REKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETS 163 (1088)
Q Consensus 84 weKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~ 163 (1088)
+-+|..+++..-.+|..++.+.....+-|+.|-..=++--..+..+++-.+...++++.. ...+-.+-+.+|++|..++
T Consensus 99 F~kA~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n-~~~~Ge~~~~lEk~Le~i~ 177 (570)
T COG4477 99 FNKAKHEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLAN-RHQYGEAAPELEKKLENIE 177 (570)
T ss_pred hHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhHHHHHHHHHHH
Confidence 344555555555555555555544444444444444444556777777777777777766 7899999999999999999
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHH----HHHHHhhHHHHHHHHH-----------
Q 001390 164 KRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTE----KENASLKYEVRVLGKE----------- 228 (1088)
Q Consensus 164 k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~E----KEn~sLKyEl~vlqkE----------- 228 (1088)
.+|..-.+.|.. ..-++++ +++.+..+.+.++++-++..=.=+..++ .++..||+=.+-+-.+
T Consensus 178 ~~l~qf~~lt~~-Gd~ieA~-evl~~~ee~~~~L~~~~e~IP~L~~e~~~~lP~ql~~Lk~Gyr~m~~~gY~l~~~~id~ 255 (570)
T COG4477 178 EELSQFVELTSS-GDYIEAR-EVLEEAEEHMIALRSIMERIPSLLAELQTELPGQLQDLKAGYRDMKEEGYHLEHVNIDS 255 (570)
T ss_pred HHHHHHHHhccC-CChhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHccCCcccccHHH
Confidence 977654443321 1223332 4555566666655554444333333222 2345555433332222
Q ss_pred -HHHH-----HHHHHHhHHhHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHhcCCChHHHhhhhHHHHhhcCCChhh
Q 001390 229 -LEIR-----NEEREFNRRTADESHKQHLESVKKIA----KLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRESPET 298 (1088)
Q Consensus 229 -LEIr-----~eEre~s~ksaEaA~KQhlEsvKKIa----kLEaECqRLr~l~rk~lpgpaa~a~mk~eve~~~~~~~~~ 298 (1088)
++-+ ...-.+++=-+|.|......+..+|. -+|-|+.--+...-+..|=|-.|-+||..-+.|+-+...-
T Consensus 256 ~~~~L~~~l~~~~~~l~~Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V 335 (570)
T COG4477 256 RLERLKEQLVENSELLTQLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERV 335 (570)
T ss_pred HHHHHHHHHHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 22333444455566666555555554 4566666555555454555888888887777666442211
Q ss_pred hhccCCCCCCCcccccCCCCCCCCCcchhhhHHHHHHHhHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhHHHHHHHH
Q 001390 299 RRKRLNSSPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQIEE 378 (1088)
Q Consensus 299 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eeEnk~lke~L~~k~~ELq~sr~~~a~t~skL~~~e~q~~~ 378 (1088)
++. |. .+ +.=..-.+..+.+-+-|+..+..=...++..-.-|+---..|..++.++..
T Consensus 336 ~~s---------Y~------l~-------e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~ 393 (570)
T COG4477 336 KES---------YR------LA-------ETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTD 393 (570)
T ss_pred HHH---------hc------cC-------hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHH
Confidence 110 00 00 011223445566666666666666666666666777777777777777776
Q ss_pred hhccc
Q 001390 379 LSKGR 383 (1088)
Q Consensus 379 ~s~~~ 383 (1088)
....|
T Consensus 394 i~~~q 398 (570)
T COG4477 394 IEDEQ 398 (570)
T ss_pred HhhhH
Confidence 55554
No 334
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=55.64 E-value=5.2e+02 Score=33.12 Aligned_cols=67 Identities=16% Similarity=0.283 Sum_probs=34.2
Q ss_pred HHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001390 101 ALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVE 172 (1088)
Q Consensus 101 ~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aE 172 (1088)
++.|+.+--|+|..|+.-|.+...+|.... .-+++-+.- ..++|.-+.+|=+.+.+|.-+|..++.|
T Consensus 130 LteqVeaQgEKIrDLE~cie~kr~kLnatE----EmLQqells-rtsLETqKlDLmaevSeLKLkltalEke 196 (861)
T KOG1899|consen 130 LTEQVEAQGEKIRDLETCIEEKRNKLNATE----EMLQQELLS-RTSLETQKLDLMAEVSELKLKLTALEKE 196 (861)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhchHH----HHHHHHHHh-hhhHHHHHhHHHHHHHHhHHHHHHHHHH
Confidence 333333444455555555555555552221 222222322 3666777777777777776666555544
No 335
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=54.95 E-value=2.5e+02 Score=29.41 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=23.9
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhh
Q 001390 865 LNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVT 904 (1088)
Q Consensus 865 l~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e 904 (1088)
+..+..+++.|+.-++.....++++..++..+..++....
T Consensus 96 ie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~ 135 (145)
T COG1730 96 IEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQ 135 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666666666666666666666544
No 336
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=54.95 E-value=3.8e+02 Score=34.74 Aligned_cols=16 Identities=38% Similarity=0.472 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 001390 153 MILEEKLAETSKRLAK 168 (1088)
Q Consensus 153 ~eLE~kL~El~k~L~k 168 (1088)
..|+.++.+++.+|.+
T Consensus 166 ~kl~~~~qe~naeL~r 181 (916)
T KOG0249|consen 166 RKLEEQLEELNAELQR 181 (916)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 337
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=54.90 E-value=3.8e+02 Score=30.72 Aligned_cols=44 Identities=27% Similarity=0.300 Sum_probs=27.3
Q ss_pred HHHhHHHHHHHh----hhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhH
Q 001390 70 VKKHAKMAQEAI----TGREKAEAEVVSLKQELDAALQQRDTGEERLIHLD 116 (1088)
Q Consensus 70 vkqh~kvaeeav----~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd 116 (1088)
.|||.--+.|-+ .|--..|+|+. .||+.++.++..++-++..|.
T Consensus 25 ykq~f~~~reEl~EFQegSrE~Eaele---sqL~q~etrnrdl~t~nqrl~ 72 (333)
T KOG1853|consen 25 YKQHFLQMREELNEFQEGSREIEAELE---SQLDQLETRNRDLETRNQRLT 72 (333)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 478876666655 35555555554 567777777777776655553
No 338
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=54.77 E-value=5.1e+02 Score=32.15 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=20.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 001390 248 KQHLESVKKIAKLESECQRLRVLVRKRLPGPAAL 281 (1088)
Q Consensus 248 KQhlEsvKKIakLEaECqRLr~l~rk~lpgpaa~ 281 (1088)
.+-++...-+..||.-.+.+..+...-.-.||||
T Consensus 400 ~~~leaq~~~~slek~~~~~~sl~~~i~~~~~~i 433 (622)
T COG5185 400 SRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQI 433 (622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 3445555566666766777776665544445544
No 339
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=54.68 E-value=1.8e+02 Score=35.09 Aligned_cols=112 Identities=15% Similarity=0.169 Sum_probs=0.0
Q ss_pred hhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHH-HHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHH--
Q 001390 788 FINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDI-LKKSKEVIEDQVKLQKMINEDLDTQLKVARVD-- 864 (1088)
Q Consensus 788 LEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELes-LeES~selEeQLk~~~e~le~LesqL~eleaE-- 864 (1088)
+.+|+.....+...+......+...--++..++.++.+++.++.. +..-......++.-...+...+...+..++.+
T Consensus 287 i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~ 366 (458)
T COG3206 287 IQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLS 366 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred -HHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001390 865 -LNEACQKLSSLEVELEDKSNCCEELEATCLELQLQ 899 (1088)
Q Consensus 865 -l~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQ 899 (1088)
+...+.+...|+.+++..+..++.+..+++++..+
T Consensus 367 ~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~ 402 (458)
T COG3206 367 KLPKLQVQLRELEREAEAARSLYETLLQRYQELSIQ 402 (458)
T ss_pred hchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 340
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=54.66 E-value=1.1e+02 Score=29.14 Aligned_cols=63 Identities=13% Similarity=0.098 Sum_probs=42.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001390 213 KENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRL 275 (1088)
Q Consensus 213 KEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk~l 275 (1088)
.++...=-.|..++.|++-+.+...--.+.++.+..+..++..+..+|..|-+-|...+|.-|
T Consensus 11 ~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LL 73 (79)
T PRK15422 11 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344555555555566655555566677777778888888889999988888887643
No 341
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=54.61 E-value=24 Score=41.56 Aligned_cols=94 Identities=23% Similarity=0.305 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHHHhhHHHHHHHhhhhhH
Q 001390 812 LMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQL----KVARVDLNEACQKLSSLEVELEDKSNCCE 887 (1088)
Q Consensus 812 lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL----~eleaEl~qlqeKVsSLE~ELE~er~~lE 887 (1088)
+....+.....+.++...+..++..+..+......+...+..+...+ ..+...+..+.++|+.++..++.......
T Consensus 89 ~~e~~ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~ 168 (370)
T PF02994_consen 89 LKEEKEKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIK 168 (370)
T ss_dssp -----------------------------H-------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHH
Confidence 34444444455556666666666666655544433333333333332 34567788888888888888888888888
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 001390 888 ELEATCLELQLQLESVTK 905 (1088)
Q Consensus 888 El~aKc~eLeeQLEr~e~ 905 (1088)
.+..++..++..|..++.
T Consensus 169 ~~~k~i~~l~~kl~DlEn 186 (370)
T PF02994_consen 169 ELEKRIKKLEDKLDDLEN 186 (370)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 888888888888887665
No 342
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=54.42 E-value=2.4e+02 Score=30.67 Aligned_cols=72 Identities=14% Similarity=0.145 Sum_probs=37.3
Q ss_pred hHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001390 196 QAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKR 274 (1088)
Q Consensus 196 ~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk~ 274 (1088)
..+..+.+....+...+.++..|...|..++.+...+..++ ++..+....+...+..+..+|...+...+..
T Consensus 114 ~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~k-------e~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 114 KLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKK-------EAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444344445555555555555555555544444333 3334555555566666666666666555543
No 343
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=54.37 E-value=3.8e+02 Score=30.62 Aligned_cols=21 Identities=0% Similarity=0.067 Sum_probs=8.2
Q ss_pred hhHHHHHHHHHhHHHHHHHHH
Q 001390 825 NSQNELDILKKSKEVIEDQVK 845 (1088)
Q Consensus 825 ELksELesLeES~selEeQLk 845 (1088)
.++.+++.++..+..++..++
T Consensus 111 ~~~~~l~~ak~~l~~a~~~~~ 131 (331)
T PRK03598 111 QARAAVKQAQAAYDYAQNFYN 131 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444433333
No 344
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=54.28 E-value=4e+02 Score=30.80 Aligned_cols=67 Identities=24% Similarity=0.318 Sum_probs=35.6
Q ss_pred HHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001390 201 SNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRL 267 (1088)
Q Consensus 201 i~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRL 267 (1088)
|..++++++..-..+.....+.-.+...++-|.-|-+-.+|.+++.+-=-=.-.-...+-|.|+|.|
T Consensus 114 Iq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkl 180 (338)
T KOG3647|consen 114 IQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKL 180 (338)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555666666666666666555443333334455555555554
No 345
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=54.09 E-value=41 Score=29.85 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHH
Q 001390 812 LMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDT 856 (1088)
Q Consensus 812 lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~Les 856 (1088)
+.+.+..++..+..++++.+.+.++++.++..++.+-..|+....
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs~ 49 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVVSN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444445556666666666777777777777777767765443
No 346
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=53.66 E-value=2.9e+02 Score=29.05 Aligned_cols=42 Identities=24% Similarity=0.145 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 001390 861 ARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLES 902 (1088)
Q Consensus 861 leaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr 902 (1088)
.--.++...+|+..+..++...+..+......+.++..+|.+
T Consensus 75 ~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~ 116 (177)
T PF13870_consen 75 TVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYR 116 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444433
No 347
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=53.64 E-value=1.5e+02 Score=39.02 Aligned_cols=95 Identities=27% Similarity=0.281 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHH
Q 001390 150 QSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKEL 229 (1088)
Q Consensus 150 k~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkEL 229 (1088)
.-+..|..++.+++++|+.-++...... .-.......+.+.+.+...|..++.+++.|...|..|+.+...
T Consensus 467 ~~q~~ls~el~el~k~l~~Ke~l~rr~~-------~~~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~-- 537 (913)
T KOG0244|consen 467 QKQGSLSGELSELEKRLAEKEPLTRRKA-------YEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNR-- 537 (913)
T ss_pred HHHhhhhHHHHHHHhhhccccHHHHHHH-------HhhhhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhH--
Confidence 3344566666677666654443311100 1112333444566677777777777777777777777666554
Q ss_pred HHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001390 230 EIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLR 268 (1088)
Q Consensus 230 EIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr 268 (1088)
-+.++-.+.++|+.-||.+.-.|+
T Consensus 538 ---------------~~~kl~eer~qklk~le~q~s~lk 561 (913)
T KOG0244|consen 538 ---------------LAAKLGEERVQKLKSLETQISLLK 561 (913)
T ss_pred ---------------HHHHhhhHHHHHHHHHHHHHHHHH
Confidence 123344455555555555554443
No 348
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=53.62 E-value=2.6e+02 Score=28.58 Aligned_cols=26 Identities=12% Similarity=0.051 Sum_probs=10.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhh
Q 001390 801 CLVSAIDKSNSLMSQLQESQKIVSNS 826 (1088)
Q Consensus 801 rLq~~qekLE~lksQLeElE~kLeEL 826 (1088)
.++..+.++.....+...++..|.+.
T Consensus 14 q~QqLq~ql~~~~~qk~~le~qL~E~ 39 (119)
T COG1382 14 QLQQLQQQLQKVILQKQQLEAQLKEI 39 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444333
No 349
>PRK00106 hypothetical protein; Provisional
Probab=53.32 E-value=5.6e+02 Score=32.23 Aligned_cols=12 Identities=17% Similarity=0.044 Sum_probs=5.7
Q ss_pred HHHHHHhhcCCc
Q 001390 620 AELIEKINLTSP 631 (1088)
Q Consensus 620 ~~lie~i~~~~~ 631 (1088)
++-+|.|+.+..
T Consensus 460 l~~lE~ia~~~~ 471 (535)
T PRK00106 460 LRDLEEIANSFD 471 (535)
T ss_pred HHHHHHHHhcCC
Confidence 344455555433
No 350
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=53.14 E-value=2.3e+02 Score=36.34 Aligned_cols=115 Identities=14% Similarity=0.046 Sum_probs=59.2
Q ss_pred hhhhhHhhhhHHHHHHHHHHHhHHHHH---------------------HHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHH
Q 001390 787 EFINVEAGNKVRQECLVSAIDKSNSLM---------------------SQLQESQKIVSNSQNELDILKKSKEVIEDQVK 845 (1088)
Q Consensus 787 eLEqLesEK~eLE~rLq~~qekLE~lk---------------------sQLeElE~kLeELksELesLeES~selEeQLk 845 (1088)
.+++....+..+...+..|+.++..+. .++..+.+.++.|..++.....+..++..|+.
T Consensus 55 kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie 134 (660)
T KOG4302|consen 55 KVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIE 134 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555444 45555566666666666666666666666666
Q ss_pred HHHHHhhhH---HH----HHHH-HHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001390 846 LQKMINEDL---DT----QLKV-ARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLE 901 (1088)
Q Consensus 846 ~~~e~le~L---es----qL~e-leaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLE 901 (1088)
.+...+-.- .. .... .-.+++++++++..|++|...+-....++...+..|-..|.
T Consensus 135 ~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg 198 (660)
T KOG4302|consen 135 KLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLG 198 (660)
T ss_pred HHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 655544222 00 0000 01345555555555555555555555555555555555544
No 351
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=53.06 E-value=2.5e+02 Score=28.81 Aligned_cols=13 Identities=8% Similarity=0.079 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHhH
Q 001390 797 VRQECLVSAIDKS 809 (1088)
Q Consensus 797 eLE~rLq~~qekL 809 (1088)
++.+....+..++
T Consensus 40 ~m~~A~~~v~kql 52 (126)
T PF07889_consen 40 SMSDAVASVSKQL 52 (126)
T ss_pred hHHHHHHHHHHHH
Confidence 3333333333333
No 352
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=53.04 E-value=3e+02 Score=31.21 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHH
Q 001390 812 LMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMI 850 (1088)
Q Consensus 812 lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~ 850 (1088)
...++.....++..|+.++..++..+..+...+.|...-
T Consensus 133 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g 171 (301)
T PF14362_consen 133 FDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFG 171 (301)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 345666667777777777777777777777776666544
No 353
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=53.03 E-value=4.2e+02 Score=31.19 Aligned_cols=64 Identities=16% Similarity=0.090 Sum_probs=30.5
Q ss_pred hhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001390 106 DTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVE 172 (1088)
Q Consensus 106 v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aE 172 (1088)
...|+-|..-+..++|....|+-.|.....- + ..+..+-.-.+...||.+|...+.+|+.+++-
T Consensus 182 r~Ae~eV~~~eerv~kAs~~L~~yr~kngvf--d-p~~qaevq~~Lvs~Le~eL~~iqaqL~tvks~ 245 (372)
T COG3524 182 RFAEEEVQKAEERVKKASNDLTDYRIKNGVF--D-PKAQAEVQMSLVSKLEDELIVIQAQLDTVKSV 245 (372)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhcCcc--C-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555555555555555444432210 0 01112222345566666666666666665543
No 354
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=52.51 E-value=23 Score=41.21 Aligned_cols=100 Identities=16% Similarity=0.144 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhH
Q 001390 796 KVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSL 875 (1088)
Q Consensus 796 ~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSL 875 (1088)
..+..+|+.....+...+..|..+...+..++..+..+...+..+...+-.+...+.++...++.+..++..++.-|++
T Consensus 59 SdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt- 137 (326)
T PF04582_consen 59 SDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVST- 137 (326)
T ss_dssp -----------------------------------------------------------HHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhh-
Confidence 3333333333333333333333333333333333333333333333333334434444444444444444444443333
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 001390 876 EVELEDKSNCCEELEATCLELQLQLES 902 (1088)
Q Consensus 876 E~ELE~er~~lEEl~aKc~eLeeQLEr 902 (1088)
---.+..++.|+..|+.....
T Consensus 138 ------~aL~ItdLe~RV~~LEs~~s~ 158 (326)
T PF04582_consen 138 ------QALNITDLESRVKALESGSSS 158 (326)
T ss_dssp ------HHHHHHHHHHHHHHHHTTTTT
T ss_pred ------hcchHhhHHHHHHHHhcCCCC
Confidence 344555566666666666554
No 355
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=52.14 E-value=1.6e+02 Score=27.76 Aligned_cols=35 Identities=26% Similarity=0.267 Sum_probs=18.2
Q ss_pred HHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001390 867 EACQKLSSLEVELEDKSNCCEELEATCLELQLQLE 901 (1088)
Q Consensus 867 qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLE 901 (1088)
.+..++..++.++...+.....+..++.+++..|.
T Consensus 66 ~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 66 ELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555554
No 356
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=52.07 E-value=55 Score=40.61 Aligned_cols=45 Identities=18% Similarity=0.210 Sum_probs=16.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHH
Q 001390 800 ECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQV 844 (1088)
Q Consensus 800 ~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQL 844 (1088)
.+.++.+..|+.+...++++...|..-+.+|..|+-+++.++.++
T Consensus 100 ~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~ 144 (907)
T KOG2264|consen 100 VKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQL 144 (907)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333
No 357
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=52.05 E-value=2.8e+02 Score=28.55 Aligned_cols=10 Identities=10% Similarity=-0.064 Sum_probs=3.7
Q ss_pred hHHHHHHHHH
Q 001390 796 KVRQECLVSA 805 (1088)
Q Consensus 796 ~eLE~rLq~~ 805 (1088)
..+-..|+..
T Consensus 46 ~~v~kql~~v 55 (126)
T PF07889_consen 46 ASVSKQLEQV 55 (126)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 358
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=51.91 E-value=3e+02 Score=30.26 Aligned_cols=87 Identities=13% Similarity=0.153 Sum_probs=56.2
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 001390 793 AGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKL 872 (1088)
Q Consensus 793 sEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKV 872 (1088)
......+.+...++.+.+-+.-.+.+.+..+..|+..+......-......-.........|+.+-..++..+..++..|
T Consensus 98 ~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv 177 (192)
T PF11180_consen 98 ARLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQV 177 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666666666667777777666666666666666666566666666666667777777777
Q ss_pred hhHHHHH
Q 001390 873 SSLEVEL 879 (1088)
Q Consensus 873 sSLE~EL 879 (1088)
..|+.+.
T Consensus 178 ~~Lq~q~ 184 (192)
T PF11180_consen 178 RQLQRQA 184 (192)
T ss_pred HHHHHHh
Confidence 6666554
No 359
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=51.76 E-value=3.7e+02 Score=29.63 Aligned_cols=67 Identities=30% Similarity=0.329 Sum_probs=38.5
Q ss_pred HHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001390 202 NALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLV 271 (1088)
Q Consensus 202 ~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~ 271 (1088)
..|..-+..+++++..++.+|+.+.........+-....+.++..| .+.+.+.-.+|.+|.+|+..|
T Consensus 139 ~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W---~~~v~kn~eie~a~~~Le~ei 205 (221)
T PF05700_consen 139 EQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRW---KELVSKNLEIEVACEELEQEI 205 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666665555555555444444444433 455666677777777777554
No 360
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=51.69 E-value=1.4e+02 Score=33.28 Aligned_cols=61 Identities=26% Similarity=0.312 Sum_probs=46.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001390 211 TEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLV 271 (1088)
Q Consensus 211 ~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~ 271 (1088)
++.++..++.++.-+.++++-...+-+-.....++-.||-.+....+.+|-+|.++||..+
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777777777777777778888888888888888888887665
No 361
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=51.35 E-value=1.2e+02 Score=28.36 Aligned_cols=70 Identities=23% Similarity=0.199 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHH
Q 001390 816 LQESQKIVSNSQNELDILKKSKEVIEDQVKLQK-MINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEAT 892 (1088)
Q Consensus 816 LeElE~kLeELksELesLeES~selEeQLk~~~-e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aK 892 (1088)
+++.+..|..|+++--.|+=.+..+++.+.... ...+++-. +..++...+.+|..|++..+..+.++...
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~k-------eNieLKve~~~L~~el~~~~~~l~~a~~~ 72 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLK-------ENIELKVEVESLKRELQEKKKLLKEAEKA 72 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888999999999999999988888432 12222222 22234444555566666666666555443
No 362
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=50.94 E-value=5.3e+02 Score=31.26 Aligned_cols=123 Identities=14% Similarity=0.182 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001390 85 EKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSK 164 (1088)
Q Consensus 85 eKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k 164 (1088)
+-++.+.+.+++.|..+.+...-+.+..-+|-..||-+..|-+++-++... +....+++.-....|..+.-+|..
T Consensus 119 ~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qs-----l~a~~k~LQ~s~~Qlk~~~~~L~~ 193 (499)
T COG4372 119 EAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQS-----LQASQKQLQASATQLKSQVLDLKL 193 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555566666666666665556666666666666666555444332211 222233333333444444555544
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHH
Q 001390 165 RLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENA 216 (1088)
Q Consensus 165 ~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~ 216 (1088)
+-.+.+.+. +-|..|.+-+..+.++.+.-.+..-...+.+....+.+.
T Consensus 194 r~~~ieQ~~----~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~ 241 (499)
T COG4372 194 RSAQIEQEA----QNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQIS 241 (499)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433333332 222334444444444444333333333333333333333
No 363
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=50.71 E-value=4e+02 Score=29.78 Aligned_cols=44 Identities=11% Similarity=0.124 Sum_probs=21.2
Q ss_pred hhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001390 790 NVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDIL 833 (1088)
Q Consensus 790 qLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesL 833 (1088)
-+...+.+++..|..+...+.....+-..++.++.+++.+.+.+
T Consensus 28 ~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~ 71 (225)
T COG1842 28 MLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKL 71 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544444444444444444444444443
No 364
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=50.59 E-value=2e+02 Score=32.53 Aligned_cols=46 Identities=22% Similarity=0.139 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHH
Q 001390 852 EDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQ 897 (1088)
Q Consensus 852 e~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLe 897 (1088)
+-...+..+++.|+..+.+.+..|+.|++..++..-.|=.|++-++
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555666666777777777777777777777666666666654
No 365
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=50.46 E-value=1.6e+02 Score=31.92 Aligned_cols=87 Identities=17% Similarity=0.236 Sum_probs=45.4
Q ss_pred hhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 001390 103 QQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLA 182 (1088)
Q Consensus 103 qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~ 182 (1088)
...+.+|+||..|+..+-..+..|+ +.+|+ .+.++..+..++.+|..++.+...+-..|..
T Consensus 79 ~lvinlE~kvD~lee~fdd~~d~l~---~q~eq----------------~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~ 139 (189)
T TIGR02132 79 SLVINLEEKVDLIEEFFDDKFDELE---AQQEQ----------------APALKKDVTKLKQDIKSLDKKLDKILELLEG 139 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHhh----------------CchHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456789999999999888888774 11221 2233333444444444444442222223334
Q ss_pred HHHHHHHHHhhhh-hHhhhHHHHHhhc
Q 001390 183 KEKLIEDLGKQRT-QAEADSNALMVRL 208 (1088)
Q Consensus 183 ~~~ii~eLkee~s-~~eaei~~Lq~rL 208 (1088)
+-+.-.+|++-.. ++...-+.|++.|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (189)
T TIGR02132 140 QQKTQDELKETIQKQIKTQGEQLQAQL 166 (189)
T ss_pred CccchhHHHHHHHHHHhhhHHHHHHHH
Confidence 4455556665554 3444545555443
No 366
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.89 E-value=3.3e+02 Score=33.06 Aligned_cols=78 Identities=27% Similarity=0.181 Sum_probs=45.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhhhcCCCC---cccchhhhh-----hhhhhHhHHHHHhhHHHHHHHHHHHHHH
Q 001390 875 LEVELEDKSNCCEELEATCLELQLQLESVTKSGIP---TDELKQDEK-----QIQTDWEIATASEKLAECQETILNLGKQ 946 (1088)
Q Consensus 875 LE~ELE~er~~lEEl~aKc~eLeeQLEr~e~~~~~---~~~~~~e~~-----~~kqe~EIaaAAeKLAECQETI~~LGKQ 946 (1088)
|+++.......++.+++.+..+..-|++..-.... ..-...+.+ -+-.++||.++..||++--+-|--|.|-
T Consensus 105 leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~k~ 184 (542)
T KOG0993|consen 105 LEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELSKA 184 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 44444445555555555555555555541110000 001111122 2678999999999999999999999966
Q ss_pred HhhccC
Q 001390 947 LKALAS 952 (1088)
Q Consensus 947 LKaLa~ 952 (1088)
+.-.|+
T Consensus 185 ~~h~a~ 190 (542)
T KOG0993|consen 185 KHHKAE 190 (542)
T ss_pred hcccch
Confidence 554433
No 367
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=49.74 E-value=28 Score=33.22 Aligned_cols=34 Identities=29% Similarity=0.224 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 001390 149 EQSLMILEEKLAETSKRLAKLGVENTHLTKALLA 182 (1088)
Q Consensus 149 Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~ 182 (1088)
..-+..||..+.+|+++|..+..-+.+|.++|.-
T Consensus 7 ~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~ 40 (88)
T PF14389_consen 7 HERRSALEQEVAELQKQLQEEQDLRRALEKALGR 40 (88)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4457789999999999999999998888877764
No 368
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=49.38 E-value=4.6e+02 Score=30.13 Aligned_cols=177 Identities=17% Similarity=0.120 Sum_probs=96.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001390 84 REKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETS 163 (1088)
Q Consensus 84 weKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~ 163 (1088)
|-.-++=+.+++..+- .-|.+.|.+|...-+++-+|+..+ ++.-.........-|....++-..|.++.
T Consensus 88 ~~Q~e~~v~a~e~~~~------rll~d~i~nLk~se~~lkqQ~~~a-----~RrE~ilv~rlA~kEQEmqe~~sqi~~lK 156 (330)
T KOG2991|consen 88 WKQYEAYVQALEGKYT------RLLSDDITNLKESEEKLKQQQQEA-----ARRENILVMRLATKEQEMQECTSQIQYLK 156 (330)
T ss_pred HHHHHHHHHHhcCccc------chhHHHHHhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555544222 235677777777777777766222 22222222222333334456777777777
Q ss_pred HHHHHhhhh--hhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHH-----HHHHhhHHHHHHHHHHHHHHHHH
Q 001390 164 KRLAKLGVE--NTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEK-----ENASLKYEVRVLGKELEIRNEER 236 (1088)
Q Consensus 164 k~L~k~~aE--n~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EK-----En~sLKyEl~vlqkELEIr~eEr 236 (1088)
..+.-..+. .+-|..|+. -....|+++..+....++++|.+|..|.= -=.-|-+..++++.|=+
T Consensus 157 ~qq~Ps~~qlR~~llDPAin---l~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENe------ 227 (330)
T KOG2991|consen 157 QQQQPSVAQLRSTLLDPAIN---LFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENE------ 227 (330)
T ss_pred HhhCcHHHHHHHHhhChHHH---HHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHH------
Confidence 754332222 111333433 35678888888888889999998888851 22334455566665532
Q ss_pred HHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHhcCCCh-HHHhhhhHHHHh
Q 001390 237 EFNRRTADESHKQHLESVKKIAKLESECQRLR---VLVRKRLPGP-AALAKMKNEVEI 290 (1088)
Q Consensus 237 e~s~ksaEaA~KQhlEsvKKIakLEaECqRLr---~l~rk~lpgp-aa~a~mk~eve~ 290 (1088)
++ .|.-+..+|++||.|+.=-+ ..||+..-|. --+..+-++||+
T Consensus 228 El----------G~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEg 275 (330)
T KOG2991|consen 228 EL----------GHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEG 275 (330)
T ss_pred HH----------HhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 22 23345667788887764322 4455544432 123445666664
No 369
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=48.99 E-value=5.1e+02 Score=34.51 Aligned_cols=71 Identities=30% Similarity=0.355 Sum_probs=44.8
Q ss_pred chhHHHHhH----HHHHHHhhhhHHH-----HHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHH
Q 001390 66 KDDLVKKHA----KMAQEAITGREKA-----EAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQR 136 (1088)
Q Consensus 66 kd~lvkqh~----kvaeeav~GweKa-----EaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqk 136 (1088)
|+..++++. ||+.||-+|.-|+ ++|-..++++++.... ++++. +...|..+++-|.+||-.+..
T Consensus 1057 k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr~------e~ik~-~~~~kdK~e~er~~rE~n~s~ 1129 (1189)
T KOG1265|consen 1057 KEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKKRM------EDIKV-DKVIKDKAERERRKRELNSSN 1129 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------Hhhhh-ccccccHHHHHHHHHHHHHHH
Confidence 555555553 7788887776554 3344445555444433 33443 666777788888888888887
Q ss_pred HHHHHHH
Q 001390 137 IHDAVMK 143 (1088)
Q Consensus 137 i~da~~k 143 (1088)
|.+.+..
T Consensus 1130 i~~~V~e 1136 (1189)
T KOG1265|consen 1130 IKEFVEE 1136 (1189)
T ss_pred HHHHHHH
Confidence 7777766
No 370
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=48.76 E-value=3.9e+02 Score=30.45 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=43.1
Q ss_pred chhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHH
Q 001390 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDI 832 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELes 832 (1088)
.+++-.|-.+...++-.-..+...++-+-+|.+|+|..|..|+.++..
T Consensus 112 gekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~ 159 (254)
T KOG2196|consen 112 GEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLEL 159 (254)
T ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 667888999999999988999999999999999999999999988877
No 371
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=48.35 E-value=2.7e+02 Score=27.04 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=16.8
Q ss_pred HHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001390 866 NEACQKLSSLEVELEDKSNCCEELEATCLELQLQL 900 (1088)
Q Consensus 866 ~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQL 900 (1088)
..+..+|+.++..+.........+..-+..|+.++
T Consensus 62 ~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~ 96 (99)
T PF10046_consen 62 QPYLQQIDQIEEQVTELEQTVYELDEYSKELESKF 96 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444455555444555555555555444
No 372
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=48.31 E-value=3.5e+02 Score=29.75 Aligned_cols=103 Identities=17% Similarity=0.275 Sum_probs=75.9
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHH----HHHHHHH
Q 001390 160 AETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKE----LEIRNEE 235 (1088)
Q Consensus 160 ~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkE----LEIr~eE 235 (1088)
+++-.+|-++++|+ +. ++..+.+++.++.......-.+|..|+.--+-++.+|..|+--...+--+ ..+=.+=
T Consensus 19 eel~~rLR~~E~ek--~~-~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEW 95 (195)
T PF10226_consen 19 EELVRRLRRAEAEK--MS-LMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREW 95 (195)
T ss_pred HHHHHHHHHHHHHH--HH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHH
Confidence 45556677777775 33 67788999999999999999999999888888888998888877655443 3344455
Q ss_pred HHHhHHhHHHHHHhHHHHHHHHHHHHHHHH
Q 001390 236 REFNRRTADESHKQHLESVKKIAKLESECQ 265 (1088)
Q Consensus 236 re~s~ksaEaA~KQhlEsvKKIakLEaECq 265 (1088)
.-+-+-++.+-++....-.+|++.||.--+
T Consensus 96 QrFGryta~vmr~eV~~Y~~KL~eLE~kq~ 125 (195)
T PF10226_consen 96 QRFGRYTASVMRQEVAQYQQKLKELEDKQE 125 (195)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777778777777777777765443
No 373
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=48.01 E-value=6 Score=50.08 Aligned_cols=19 Identities=37% Similarity=0.212 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHhh
Q 001390 931 EKLAECQETILNLGKQLKA 949 (1088)
Q Consensus 931 eKLAECQETI~~LGKQLKa 949 (1088)
+.-+...+|+..|-.||+.
T Consensus 339 e~N~~l~e~~~~LEeel~~ 357 (713)
T PF05622_consen 339 EDNAVLLETKAMLEEELKK 357 (713)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554
No 374
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=47.69 E-value=1.1e+02 Score=30.17 Aligned_cols=63 Identities=16% Similarity=0.147 Sum_probs=45.1
Q ss_pred chhhhhhHhhhhHHHHHHHHHHHhHHHH--HHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHH
Q 001390 785 GSEFINVEAGNKVRQECLVSAIDKSNSL--MSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQ 847 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qekLE~l--ksQLeElE~kLeELksELesLeES~selEeQLk~~ 847 (1088)
.++++.+.......+.|++.+..+++.+ ...+..++-.+.+++-++..+...+..++.++.-+
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777778887777777777 77777777777777777777777776666555443
No 375
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=47.49 E-value=5.2e+02 Score=30.21 Aligned_cols=116 Identities=17% Similarity=0.170 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHH
Q 001390 813 MSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLD----TQLKVARVDLNEACQKLSSLEVELEDKSNCCEE 888 (1088)
Q Consensus 813 ksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~Le----sqL~eleaEl~qlqeKVsSLE~ELE~er~~lEE 888 (1088)
..-+..+...|.+++..++.++.++..++.+++.....+..-. ..+...-..+.+...++..+..+|......++.
T Consensus 73 ~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q 152 (301)
T PF06120_consen 73 RANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLEQ 152 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555543332221111 111111122445666666677777777666776
Q ss_pred HHHHHHHHHHHHHhhhcCCCCcccchhhhhhhhhhHhHHHHHhhHHHH
Q 001390 889 LEATCLELQLQLESVTKSGIPTDELKQDEKQIQTDWEIATASEKLAEC 936 (1088)
Q Consensus 889 l~aKc~eLeeQLEr~e~~~~~~~~~~~e~~~~kqe~EIaaAAeKLAEC 936 (1088)
...+....+..|.-..... .+..-++.+|...|..=|..-
T Consensus 153 ~~~k~~~~q~~l~~~~~~~--------~~~ir~~~~e~~~~~~sl~~~ 192 (301)
T PF06120_consen 153 MQSKASETQATLNDLTEQR--------IDLIRQKAAEQAGAYNSLKGM 192 (301)
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 6667777766666433210 012224466776666555543
No 376
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=47.39 E-value=1.6e+02 Score=28.28 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=9.1
Q ss_pred HHHHHHHhhHHHHHHHHHhHHHHH
Q 001390 818 ESQKIVSNSQNELDILKKSKEVIE 841 (1088)
Q Consensus 818 ElE~kLeELksELesLeES~selE 841 (1088)
++..+...+..+++.++...-.+.
T Consensus 33 ~ld~~~r~l~~~~e~lr~~rN~~s 56 (108)
T PF02403_consen 33 ELDQERRELQQELEELRAERNELS 56 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 333333333333333333333333
No 377
>PRK09343 prefoldin subunit beta; Provisional
Probab=47.36 E-value=3.1e+02 Score=27.56 Aligned_cols=47 Identities=15% Similarity=0.005 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001390 854 LDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQL 900 (1088)
Q Consensus 854 LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQL 900 (1088)
.++-...++..+.-+..++..|+...++.+..+.++...++++-.+.
T Consensus 69 ~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 69 KTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444445555555557777777777777777777777777765543
No 378
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=47.32 E-value=96 Score=33.96 Aligned_cols=34 Identities=32% Similarity=0.448 Sum_probs=29.0
Q ss_pred hhhhHHHHHHHhHHHHHHHHHHHhhhhhhhhHHH
Q 001390 326 RINFLTEQLRAMEEENNSLKEVLDKKTNELQFSR 359 (1088)
Q Consensus 326 ~~~~l~~rl~~~eeEnk~lke~L~~k~~ELq~sr 359 (1088)
+...+.+=|..+|+.-..|...|+.|..|||.-|
T Consensus 161 ~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 161 NLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456788899999999999999999999998643
No 379
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=47.07 E-value=4.4e+02 Score=34.48 Aligned_cols=30 Identities=7% Similarity=0.075 Sum_probs=20.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001390 244 DESHKQHLESVKKIAKLESECQRLRVLVRK 273 (1088)
Q Consensus 244 EaA~KQhlEsvKKIakLEaECqRLr~l~rk 273 (1088)
+.|+..+..+.+.+..++.++++.-....+
T Consensus 147 d~aS~eL~~iR~~~~~~~~~i~~~l~~~~~ 176 (782)
T PRK00409 147 DSASEKLRGIRRQLRRKKSRIREKLESIIR 176 (782)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777766544444
No 380
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=46.82 E-value=4.2e+02 Score=30.04 Aligned_cols=18 Identities=11% Similarity=-0.080 Sum_probs=7.1
Q ss_pred hhhhHhhhhHHHHHHHHH
Q 001390 788 FINVEAGNKVRQECLVSA 805 (1088)
Q Consensus 788 LEqLesEK~eLE~rLq~~ 805 (1088)
+.+.+..+..++..+..+
T Consensus 82 l~~a~a~l~~~~~~~~~~ 99 (334)
T TIGR00998 82 LAKAEANLAALVRQTKQL 99 (334)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444333333333
No 381
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=46.73 E-value=2.4e+02 Score=32.86 Aligned_cols=102 Identities=13% Similarity=0.089 Sum_probs=54.3
Q ss_pred hhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001390 787 EFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLN 866 (1088)
Q Consensus 787 eLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~ 866 (1088)
-++||++...+++..+-... +.|..|.+++.-.-+.++.-| +.++.++..+-.+|..+.+++.
T Consensus 228 H~~QM~s~~~nIe~~~~~~~--------------~~Ldklh~eit~~LEkI~SRE---K~lNnqL~~l~q~fr~a~~~ls 290 (384)
T KOG0972|consen 228 HLEQMNSMHKNIEQKVGNVG--------------PYLDKLHKEITKALEKIASRE---KSLNNQLASLMQKFRRATDTLS 290 (384)
T ss_pred HHHHHHHHHHHHHHhhcchh--------------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 36677776666555444333 334444444333333332222 2222233333444444445555
Q ss_pred HHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhc
Q 001390 867 EACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTK 905 (1088)
Q Consensus 867 qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~ 905 (1088)
+++.+-..+..-...+...+.+.-..++.+++++++--.
T Consensus 291 e~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~ 329 (384)
T KOG0972|consen 291 ELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGA 329 (384)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 555555555556666677777788888888888886444
No 382
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=46.70 E-value=5.5e+02 Score=30.21 Aligned_cols=109 Identities=26% Similarity=0.334 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH------
Q 001390 91 VVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSK------ 164 (1088)
Q Consensus 91 ~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k------ 164 (1088)
+..++++.+.+....-.=||.+. +.+++.|.++|.|+-. .+.... .+.+.....|..+|..+.+
T Consensus 86 l~~l~keKe~L~~~~e~EEE~lt------n~L~rkl~qLr~EK~~--lE~~Le--~EqE~~V~kL~k~i~~Le~e~~~~q 155 (310)
T PF09755_consen 86 LQQLKKEKETLALKYEQEEEFLT------NDLSRKLNQLRQEKVE--LENQLE--QEQEYLVNKLQKKIERLEKEKSAKQ 155 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH--HHHHHH--HhHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33444444444443333333333 3455555555554441 111111 2333333444444444433
Q ss_pred -HHHHhhhhhhhhhHHH-HHHHHHHHHHHhhhhhHhhhHHHHHhhcc
Q 001390 165 -RLAKLGVENTHLTKAL-LAKEKLIEDLGKQRTQAEADSNALMVRLD 209 (1088)
Q Consensus 165 -~L~k~~aEn~~Ls~~l-~~~~~ii~eLkee~s~~eaei~~Lq~rLE 209 (1088)
.|..++.|--.|.++| ++-+-|+..|...+.++.++-..|+.+|+
T Consensus 156 ~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 156 EELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2333333322244444 23344555555555555555555555554
No 383
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=46.26 E-value=99 Score=28.15 Aligned_cols=37 Identities=8% Similarity=0.145 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 001390 815 QLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMIN 851 (1088)
Q Consensus 815 QLeElE~kLeELksELesLeES~selEeQLk~~~e~l 851 (1088)
++.-.+..|++|+..+...+..+..++.++..+..++
T Consensus 12 ~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 48 (69)
T PF04102_consen 12 KLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERL 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444443333
No 384
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=46.24 E-value=1.5e+02 Score=27.32 Aligned_cols=56 Identities=21% Similarity=0.207 Sum_probs=24.1
Q ss_pred HHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHH
Q 001390 821 KIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLE 876 (1088)
Q Consensus 821 ~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE 876 (1088)
.+++.|=...+.++..+..+-.+..........+-.+...++..+..+.+++.+++
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 33333333333344444444444444444444444444444444444544444443
No 385
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=46.05 E-value=4.6e+02 Score=29.16 Aligned_cols=54 Identities=19% Similarity=0.217 Sum_probs=28.1
Q ss_pred HHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Q 001390 821 KIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSS 874 (1088)
Q Consensus 821 ~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsS 874 (1088)
..|+.|+..+..++..+..+...+...+..|..+-.+-...+-|++.+.++..+
T Consensus 32 s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~s 85 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHS 85 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 344444444444555555555555555555555555555555566666665433
No 386
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=45.85 E-value=2.7e+02 Score=31.55 Aligned_cols=49 Identities=14% Similarity=0.243 Sum_probs=24.4
Q ss_pred HhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 001390 824 SNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKL 872 (1088)
Q Consensus 824 eELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKV 872 (1088)
--+.+|.+-....+.++|+++..+...+..+..++..++++-..+.+||
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKI 130 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555545444444444444444443
No 387
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=45.76 E-value=1.4e+02 Score=32.30 Aligned_cols=27 Identities=11% Similarity=0.179 Sum_probs=11.5
Q ss_pred HHHHhhHHHHHHHHHhHHHHHHHHHHH
Q 001390 821 KIVSNSQNELDILKKSKEVIEDQVKLQ 847 (1088)
Q Consensus 821 ~kLeELksELesLeES~selEeQLk~~ 847 (1088)
..+.-|+.++++++...+-++.+++.+
T Consensus 86 ~~i~~l~ek~q~l~~t~s~veaEik~L 112 (201)
T KOG4603|consen 86 GKIVALTEKVQSLQQTCSYVEAEIKEL 112 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444443
No 388
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=45.69 E-value=4.4e+02 Score=30.45 Aligned_cols=70 Identities=17% Similarity=0.137 Sum_probs=51.2
Q ss_pred hHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHH
Q 001390 791 VEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKV 860 (1088)
Q Consensus 791 LesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~e 860 (1088)
|++-+.++..+++....++..-.+...++..+|+--+.+++-..+.++.+..=-.+.-..|+.-+.+|..
T Consensus 110 lk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqk 179 (338)
T KOG3647|consen 110 LKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQK 179 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 6777777777777777777777778888888888888888887777777776666666566555555543
No 389
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=45.61 E-value=3.1e+02 Score=26.96 Aligned_cols=38 Identities=26% Similarity=0.259 Sum_probs=20.0
Q ss_pred HHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhh
Q 001390 867 EACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVT 904 (1088)
Q Consensus 867 qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e 904 (1088)
.-.........+|......+..+...+.+++..+..+.
T Consensus 71 ~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 71 EEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555555555555555555555555555543
No 390
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=45.60 E-value=3.3e+02 Score=27.36 Aligned_cols=50 Identities=14% Similarity=0.094 Sum_probs=41.1
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001390 850 INEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQ 899 (1088)
Q Consensus 850 ~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQ 899 (1088)
.+.+....-..+.++.....++|.+|++...|..+...+.+.-++++-..
T Consensus 61 ~l~dk~a~~s~leak~k~see~IeaLqkkK~YlEk~v~eaE~nLrellqs 110 (114)
T KOG3501|consen 61 MLSDKAAVRSHLEAKMKSSEEKIEALQKKKTYLEKTVSEAEQNLRELLQS 110 (114)
T ss_pred HcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666677889999999999999999999999988888888877654
No 391
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=45.45 E-value=3.1e+02 Score=35.72 Aligned_cols=72 Identities=19% Similarity=0.178 Sum_probs=30.7
Q ss_pred HHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHH-HHHHHHHHHHhHHhHHHHHHhHHHHHHH
Q 001390 185 KLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKE-LEIRNEEREFNRRTADESHKQHLESVKK 256 (1088)
Q Consensus 185 ~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkE-LEIr~eEre~s~ksaEaA~KQhlEsvKK 256 (1088)
++|.+|.+++..++.....+...++..++....|+.+...++++ -+++.+.++-..+.+..|.++..+..++
T Consensus 515 ~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~ 587 (771)
T TIGR01069 515 VLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRE 587 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555444444444444444444444444443333332 2333333333334444444433333333
No 392
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=44.76 E-value=4.2e+02 Score=28.30 Aligned_cols=67 Identities=24% Similarity=0.362 Sum_probs=42.3
Q ss_pred HhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhcCCCCcccchhhhhhhhhhHhHHHHHhhHHHHHHHHHHHHHHHhh
Q 001390 872 LSSLEVELEDKSNCCEELEATCLELQLQLESVTKSGIPTDELKQDEKQIQTDWEIATASEKLAECQETILNLGKQLKA 949 (1088)
Q Consensus 872 VsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~~~~~~~~~~~e~~~~kqe~EIaaAAeKLAECQETI~~LGKQLKa 949 (1088)
+..|..+|..-...-..+...+.+.+.+|..... .+...+++ ||.+.-..|+=|+.-|..|-++|..
T Consensus 104 ~~~Lyq~L~~hqe~erRL~~mi~~~e~~l~~~~~---------~~~~~lq~--ei~a~e~RL~RCr~Ai~~iE~~I~~ 170 (173)
T PF07445_consen 104 IHQLYQRLAQHQEYERRLLAMIQEREQQLEQAQS---------FEQQQLQQ--EILALEQRLQRCRQAIEKIEEQIQR 170 (173)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh---------HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444555555666666653221 12334554 7889999999999999999999864
No 393
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=44.59 E-value=7.7e+02 Score=31.32 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHH
Q 001390 84 REKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALK 120 (1088)
Q Consensus 84 weKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLK 120 (1088)
|=..+--+...++.|+-....++++-+.+..+..-|+
T Consensus 336 ~~n~e~~~e~~~r~~e~~kd~~~~~~~~~~~~~~sl~ 372 (607)
T KOG0240|consen 336 WVNLELTAEEWKRKLEKKKDKNVALKEELEKLRNSLK 372 (607)
T ss_pred hhhhHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4455555666666666666666666666666555555
No 394
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=44.57 E-value=1.6e+02 Score=35.08 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=19.4
Q ss_pred hHhHHHHH-------hhHHHHHHHHHHHHHHHhhc
Q 001390 923 DWEIATAS-------EKLAECQETILNLGKQLKAL 950 (1088)
Q Consensus 923 e~EIaaAA-------eKLAECQETI~~LGKQLKaL 950 (1088)
|+||.++| +.+.|--.|.++|-.+||+|
T Consensus 215 e~~~~~~a~N~~~~ks~i~ei~~sl~~l~d~lk~~ 249 (464)
T KOG4637|consen 215 EKEIGRIANNYDKLKSRIREIHDSLTRLEDDLKAL 249 (464)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 55665554 34667777888888888885
No 395
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=44.48 E-value=4.6e+02 Score=34.25 Aligned_cols=30 Identities=13% Similarity=0.100 Sum_probs=22.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001390 244 DESHKQHLESVKKIAKLESECQRLRVLVRK 273 (1088)
Q Consensus 244 EaA~KQhlEsvKKIakLEaECqRLr~l~rk 273 (1088)
+.|+..+.+..+.+..++.++++.-..+.+
T Consensus 142 d~aS~~L~~ir~~~~~~~~~i~~~l~~~~~ 171 (771)
T TIGR01069 142 DGASEELDAIRESLKALEEEVVKRLHKIIR 171 (771)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888888888876544433
No 396
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=44.37 E-value=7.9e+02 Score=32.33 Aligned_cols=44 Identities=32% Similarity=0.290 Sum_probs=19.7
Q ss_pred HHhhcccchhHHHHhHHH----HHHHhhhhHHHHHHHHHHHHHHHHHHh
Q 001390 59 ALAECNAKDDLVKKHAKM----AQEAITGREKAEAEVVSLKQELDAALQ 103 (1088)
Q Consensus 59 a~~~~~~kd~lvkqh~kv----aeeav~GweKaEaE~~slKkqLe~~~q 103 (1088)
|.+....=|+||| |.|+ -.++-+-++.|.+-...+.+.++.-++
T Consensus 870 ~~~~~~~id~lv~-~IK~~~~tq~~~~~~~d~~~~~~e~~~~~l~sk~~ 917 (1259)
T KOG0163|consen 870 ANSTYRQIDDLVK-KIKMPRITQREMNSEYDVAVKNYEKLVKRLDSKEQ 917 (1259)
T ss_pred hhhHHHHHHHHHH-HhcccccchHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3333444455654 3443 334444444444444444444444333
No 397
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=44.13 E-value=4.5e+02 Score=34.25 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=17.7
Q ss_pred HHHHHHhhHHHHHHHhhhh-hHHHHHHHHHHHHHHHhh
Q 001390 867 EACQKLSSLEVELEDKSNC-CEELEATCLELQLQLESV 903 (1088)
Q Consensus 867 qlqeKVsSLE~ELE~er~~-lEEl~aKc~eLeeQLEr~ 903 (1088)
.+.+|++.|+.|+.+--.. -.+...+|+.|+.||.+-
T Consensus 670 ~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~ 707 (762)
T PLN03229 670 DLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQK 707 (762)
T ss_pred hHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHH
Confidence 3445555555555332211 113345666666666653
No 398
>PRK02119 hypothetical protein; Provisional
Probab=44.08 E-value=1.1e+02 Score=28.38 Aligned_cols=28 Identities=7% Similarity=0.086 Sum_probs=11.4
Q ss_pred HHHHHhhHHHHHHHHHhHHHHHHHHHHH
Q 001390 820 QKIVSNSQNELDILKKSKEVIEDQVKLQ 847 (1088)
Q Consensus 820 E~kLeELksELesLeES~selEeQLk~~ 847 (1088)
+..|++|+..+...+..+..+..++..+
T Consensus 22 E~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 22 ENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444333
No 399
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=43.94 E-value=1.2e+02 Score=31.93 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=14.8
Q ss_pred HHHHHHHHhhccCchhhhcccccc
Q 001390 940 ILNLGKQLKALASPREAALFDKVI 963 (1088)
Q Consensus 940 I~~LGKQLKaLa~~~e~~~~d~~~ 963 (1088)
+.=|--||++|.-. ++.||...-
T Consensus 118 ~~Gldeqi~~lkes-~~yLF~~~~ 140 (155)
T PF06810_consen 118 LKGLDEQIKALKES-DPYLFEEEE 140 (155)
T ss_pred cccHHHHHHHHHhc-CchhccCCc
Confidence 44455677777544 367888766
No 400
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=43.77 E-value=3.1e+02 Score=26.56 Aligned_cols=30 Identities=17% Similarity=0.302 Sum_probs=16.6
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhHHHHHHHH
Q 001390 865 LNEACQKLSSLEVELEDKSNCCEELEATCL 894 (1088)
Q Consensus 865 l~qlqeKVsSLE~ELE~er~~lEEl~aKc~ 894 (1088)
+......|..|+.-.......+.+++.|++
T Consensus 68 Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 68 IDQIEEQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444555555555555566666665554
No 401
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=43.75 E-value=4.2e+02 Score=28.07 Aligned_cols=43 Identities=19% Similarity=0.226 Sum_probs=20.8
Q ss_pred HHHhHHHHHHHHHHHH-HHHHhhHHHHHHHHHhHHHHHHHHHHH
Q 001390 805 AIDKSNSLMSQLQESQ-KIVSNSQNELDILKKSKEVIEDQVKLQ 847 (1088)
Q Consensus 805 ~qekLE~lksQLeElE-~kLeELksELesLeES~selEeQLk~~ 847 (1088)
....+.+++..+.-++ ..+..++.+.+.++..+..+..+|+..
T Consensus 56 ~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~e 99 (177)
T PF07798_consen 56 FKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREE 99 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444333 444555555555555555555555443
No 402
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=43.74 E-value=80 Score=39.74 Aligned_cols=35 Identities=29% Similarity=0.220 Sum_probs=23.6
Q ss_pred HHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhc
Q 001390 871 KLSSLEVELEDKSNCCEELEATCLELQLQLESVTK 905 (1088)
Q Consensus 871 KVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~ 905 (1088)
++..+..+++..+..++++..++.+|+++|+.+..
T Consensus 599 ~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~~~ 633 (638)
T PRK10636 599 ELTACLQQQASAKSGLEECEMAWLEAQEQLEQMLL 633 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455556666666677777777788877776654
No 403
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=43.66 E-value=7e+02 Score=30.57 Aligned_cols=98 Identities=16% Similarity=0.152 Sum_probs=62.6
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 001390 111 RLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDL 190 (1088)
Q Consensus 111 rvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eL 190 (1088)
++...=.++.+-+.++...-+.+-..+..-+.....-|+.-...+...-.++.++|...+.++ ....+.++.-+..+
T Consensus 320 ~~e~~le~l~~~~E~~a~~~~~~~~~L~~f~~~~~~lwd~h~~~l~~~e~~l~~~l~~~r~~~---~~~~q~~E~~Ld~~ 396 (473)
T PF14643_consen 320 EFEEELEKLDKSFEELAKQTEAQSEDLFKFFQEAAQLWDEHRKKLSKQEEELEKRLEQCREKH---DQENQEKEAKLDIA 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHH
Confidence 333333334444444444446667788888888888899999888888888888888888884 44556666666666
Q ss_pred HhhhhhHhhhHHHHHhhcchHH
Q 001390 191 GKQRTQAEADSNALMVRLDSTE 212 (1088)
Q Consensus 191 kee~s~~eaei~~Lq~rLE~~E 212 (1088)
.+...++..+ +.|...|+...
T Consensus 397 ~d~lRq~s~e-e~L~~~l~~~~ 417 (473)
T PF14643_consen 397 LDRLRQASSE-EKLKEHLEKAL 417 (473)
T ss_pred HHHHHhCCCH-HHHHHHHHHHH
Confidence 6666555543 34444444333
No 404
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=43.50 E-value=71 Score=39.09 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhHHHH
Q 001390 814 SQLQESQKIVSNSQNELDILKKSKEVI 840 (1088)
Q Consensus 814 sQLeElE~kLeELksELesLeES~sel 840 (1088)
+.+.+.+.++++|+++|+.++.+++++
T Consensus 69 SALteqQ~kasELEKqLaaLrqElq~~ 95 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEIRRELDVL 95 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555554444433
No 405
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=43.43 E-value=3.3e+02 Score=31.57 Aligned_cols=92 Identities=20% Similarity=0.153 Sum_probs=59.8
Q ss_pred hhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-------hHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHH
Q 001390 788 FINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSN-------SQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKV 860 (1088)
Q Consensus 788 LEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeE-------LksELesLeES~selEeQLk~~~e~le~LesqL~e 860 (1088)
+.-|+..+.+.+++|++=..+|.+++.||.-+++-+-| .+--|..+.+++..+..=++.|+..+-+.+.-++.
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQK 149 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQK 149 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHH
Confidence 55688888899999998888999999988877655432 23333445555555555555555555555555566
Q ss_pred HHHHHHHHHHHHhhHHHHH
Q 001390 861 ARVDLNEACQKLSSLEVEL 879 (1088)
Q Consensus 861 leaEl~qlqeKVsSLE~EL 879 (1088)
+=+.++-+-.|+++|=+-+
T Consensus 150 YFvDINiQN~KLEsLLqsM 168 (305)
T PF15290_consen 150 YFVDINIQNKKLESLLQSM 168 (305)
T ss_pred HHhhhhhhHhHHHHHHHHH
Confidence 6666666666666664433
No 406
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=43.43 E-value=5.5e+02 Score=29.31 Aligned_cols=49 Identities=22% Similarity=0.289 Sum_probs=34.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHhhh-hhHHHhhhhhHHHHHHHH
Q 001390 75 KMAQEAITGREKAEAEVVSLKQELDAALQQR-DTGEERLIHLDAALKECM 123 (1088)
Q Consensus 75 kvaeeav~GweKaEaE~~slKkqLe~~~qq~-v~lEErvkhLd~aLKecm 123 (1088)
.+||-++..+..+...+..+...|....+.. ...+.++.++...+..-.
T Consensus 136 aaAe~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~~ 185 (319)
T PF02601_consen 136 AAAELIVPDRRELLQRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQLQS 185 (319)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 6799999999999999998887776664443 334455666665555544
No 407
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=43.22 E-value=71 Score=39.11 Aligned_cols=41 Identities=17% Similarity=0.219 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHH
Q 001390 808 KSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQK 848 (1088)
Q Consensus 808 kLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~ 848 (1088)
.++..+....++|.+|+.|+.+++.+......++..|+.++
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLE 110 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLG 110 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 34444555666667777777666666666666655555443
No 408
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=43.14 E-value=7.5e+02 Score=30.76 Aligned_cols=20 Identities=10% Similarity=0.089 Sum_probs=10.5
Q ss_pred HhhcchHHHHHHHhhHHHHH
Q 001390 205 MVRLDSTEKENASLKYEVRV 224 (1088)
Q Consensus 205 q~rLE~~EKEn~sLKyEl~v 224 (1088)
..-|.|+...+...+..+..
T Consensus 139 ~~ll~Pl~e~l~~f~~~v~~ 158 (475)
T PRK10361 139 NSLLSPLREQLDGFRRQVQD 158 (475)
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 34455655555555554443
No 409
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=43.12 E-value=1.9e+02 Score=35.61 Aligned_cols=84 Identities=19% Similarity=0.226 Sum_probs=46.1
Q ss_pred HhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhh
Q 001390 807 DKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCC 886 (1088)
Q Consensus 807 ekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~l 886 (1088)
+.+.++-.++++++.++..|..+-+.++++++.+..+-..+..++ +..+.-.+ .++. ++.+..+...
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i---~~av~~~~---~~~~-------~~~~ql~~~~ 125 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQI---QQAVQSET---QELT-------KEIEQLKSER 125 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH---HHHHHhhh---HHHH-------HHHHHHHHHH
Confidence 456667777777777777777777777777776655544444333 22222212 2222 2223333334
Q ss_pred HHHHHHHHHHHHHHHhh
Q 001390 887 EELEATCLELQLQLESV 903 (1088)
Q Consensus 887 EEl~aKc~eLeeQLEr~ 903 (1088)
..+...+.+|+.+|.-.
T Consensus 126 ~~~~~~l~~l~~~l~~~ 142 (472)
T TIGR03752 126 QQLQGLIDQLQRRLAGV 142 (472)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 44556666777777543
No 410
>PF15456 Uds1: Up-regulated During Septation
Probab=43.08 E-value=2.7e+02 Score=28.42 Aligned_cols=34 Identities=15% Similarity=0.051 Sum_probs=22.2
Q ss_pred chhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHH
Q 001390 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQES 819 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qekLE~lksQLeEl 819 (1088)
.+|++.++.+...+..+++..+.++. +...++++
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdA 54 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDA 54 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 56777777777777777777666555 44444443
No 411
>PF13166 AAA_13: AAA domain
Probab=43.01 E-value=8e+02 Score=31.07 Aligned_cols=43 Identities=21% Similarity=0.337 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhhHHHHhhcCC
Q 001390 249 QHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRE 294 (1088)
Q Consensus 249 QhlEsvKKIakLEaECqRLr~l~rk~lpgpaa~a~mk~eve~~~~~ 294 (1088)
........+..++.+...|+..+...- .+...+-.++..+|..
T Consensus 432 ~~~~~~~~~~~~~~~i~~l~~~~~~~~---~~~~~iN~~L~~~g~~ 474 (712)
T PF13166_consen 432 KLKKAKEEIKKIEKEIKELEAQLKNTE---PAADRINEELKRLGFS 474 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHhCCC
Confidence 333444455555555555555544322 2345666777777654
No 412
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=42.80 E-value=4.4e+02 Score=31.71 Aligned_cols=104 Identities=15% Similarity=0.106 Sum_probs=51.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001390 802 LVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELED 881 (1088)
Q Consensus 802 Lq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~ 881 (1088)
+....+.+..+...+..+-..+...+..+...-.....++..+..........-..+..+..-+.....=-.+|=.|+..
T Consensus 278 l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~yl~~~~~~~~~~~~~~~~i~~~~~~l~~L~~~Y~~F~~aY~~LL~Ev~R 357 (412)
T PF04108_consen 278 LQSQRDHIRELYNALSEALEELRKFGERLPSYLAAFHDFEERWEEEKESIQAYIDELEQLCEFYEGFLSAYDSLLLEVER 357 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444445555555544444444444444444444333333333333333344444444445556666
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhc
Q 001390 882 KSNCCEELEATCLELQLQLESVTK 905 (1088)
Q Consensus 882 er~~lEEl~aKc~eLeeQLEr~e~ 905 (1088)
++....-...-+..+.++|.++..
T Consensus 358 Rr~~~~k~~~i~~~~~eeL~~l~e 381 (412)
T PF04108_consen 358 RRAVRDKMKKIIREANEELDKLRE 381 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655566666666666665543
No 413
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=42.78 E-value=1.8e+02 Score=30.89 Aligned_cols=94 Identities=19% Similarity=0.143 Sum_probs=51.6
Q ss_pred chhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001390 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVD 864 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaE 864 (1088)
.+.++.+..+....++.|-+....+.+..-+++. ..+++..+++.++....-|+.+...++-+..+
T Consensus 43 ne~id~imer~~~ieNdlg~~~~~~~g~kk~~~~--------------~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~ 108 (157)
T COG3352 43 NEVIDAIMERMTDIENDLGKVKIEIEGQKKQLQD--------------IKEELERLEENIKDLVSLYELVSRDFNPFMSK 108 (157)
T ss_pred hHHHHHHHHHHHHHHhhcccccccccchhhhHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhh
Confidence 4556666666666666666555555444444444 55555555555555555555555555544433
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhc
Q 001390 865 LNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTK 905 (1088)
Q Consensus 865 l~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~ 905 (1088)
.-+... -..+++..++.+++.-++....
T Consensus 109 ~~qes~-------------~~veel~eqV~el~~i~emv~~ 136 (157)
T COG3352 109 TPQESR-------------GIVEELEEQVNELKMIVEMVIK 136 (157)
T ss_pred hHHHHH-------------HHHHHHHHHHHHHHHHHHHHhc
Confidence 322211 1255666677777777776554
No 414
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=42.71 E-value=1.1e+02 Score=27.93 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=18.6
Q ss_pred HhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHH
Q 001390 792 EAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKE 838 (1088)
Q Consensus 792 esEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~s 838 (1088)
+..+.+|+.++.-..+-++.+..-+-.-...|..|+.++..+.+.+.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443333333333333333333333333
No 415
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=42.58 E-value=3e+02 Score=26.08 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 001390 814 SQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMIN 851 (1088)
Q Consensus 814 sQLeElE~kLeELksELesLeES~selEeQLk~~~e~l 851 (1088)
.+-.+.+-++..--.+++.....+.++|.+...++..|
T Consensus 25 ~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~Y 62 (79)
T PF08581_consen 25 HQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQY 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555555555555444
No 416
>PRK04325 hypothetical protein; Provisional
Probab=42.30 E-value=1.3e+02 Score=27.90 Aligned_cols=43 Identities=12% Similarity=0.158 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 001390 809 SNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMIN 851 (1088)
Q Consensus 809 LE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~l 851 (1088)
|..+..++.-.+..|++|+..+...+..+..+..++..+..++
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444555555445544444444444444333
No 417
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=41.92 E-value=3.6e+02 Score=27.45 Aligned_cols=84 Identities=13% Similarity=0.090 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 001390 794 GNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLS 873 (1088)
Q Consensus 794 EK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVs 873 (1088)
....+...++.+....+.+....-..++.|.+++.++...-.....++.++......+..+...++ ..+=...++.-+.
T Consensus 28 ~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s-~~~l~~~L~~~~~ 106 (150)
T PF07200_consen 28 QVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYS-PDALLARLQAAAS 106 (150)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHH
Q ss_pred hHHHH
Q 001390 874 SLEVE 878 (1088)
Q Consensus 874 SLE~E 878 (1088)
..+.+
T Consensus 107 e~eee 111 (150)
T PF07200_consen 107 EAEEE 111 (150)
T ss_dssp HHHHH
T ss_pred HHHHH
No 418
>PRK12705 hypothetical protein; Provisional
Probab=41.76 E-value=5e+02 Score=32.41 Aligned_cols=106 Identities=12% Similarity=0.129 Sum_probs=0.0
Q ss_pred hhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001390 789 INVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEA 868 (1088)
Q Consensus 789 EqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~ql 868 (1088)
+.+-.-+.........+..++...+..++..+..|.....+|+.-.+.+...+.++......+......+.....+....
T Consensus 52 ~~~~~~~~~~~~~~~~~e~e~~~~~~~~~~~e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 131 (508)
T PRK12705 52 AALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNE 131 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhHHHHHHHhhhhhHHHHHHHHH
Q 001390 869 CQKLSSLEVELEDKSNCCEELEATCLE 895 (1088)
Q Consensus 869 qeKVsSLE~ELE~er~~lEEl~aKc~e 895 (1088)
.+++.+|..+ +-+...+..+...+..
T Consensus 132 Le~ia~lt~~-eak~~l~~~~~~~~~~ 157 (508)
T PRK12705 132 LYRVAGLTPE-QARKLLLKLLDAELEE 157 (508)
T ss_pred HHHHhCCCHH-HHHHHHHHHHHHHHHH
No 419
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=41.64 E-value=17 Score=35.75 Aligned_cols=29 Identities=10% Similarity=0.012 Sum_probs=5.3
Q ss_pred HHHHHhhhhhHHHhhhhhHHHHHHHHHHh
Q 001390 98 LDAALQQRDTGEERLIHLDAALKECMDQL 126 (1088)
Q Consensus 98 Le~~~qq~v~lEErvkhLd~aLKecmkQL 126 (1088)
..++..+...|+.++.++......+.+.|
T Consensus 41 ~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 41 NAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 33333333333444444433333333444
No 420
>PRK04406 hypothetical protein; Provisional
Probab=41.42 E-value=1.6e+02 Score=27.55 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=8.0
Q ss_pred HHHhhHHHHHHHHHhHHHHHHH
Q 001390 822 IVSNSQNELDILKKSKEVIEDQ 843 (1088)
Q Consensus 822 kLeELksELesLeES~selEeQ 843 (1088)
.|++|+..+...+..+..+..+
T Consensus 26 tIe~LN~~v~~Qq~~I~~L~~q 47 (75)
T PRK04406 26 TIEELNDALSQQQLLITKMQDQ 47 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 421
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=40.89 E-value=5.9e+02 Score=33.30 Aligned_cols=54 Identities=9% Similarity=0.048 Sum_probs=27.4
Q ss_pred chhhhhhHhhhhHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHH
Q 001390 785 GSEFINVEAGNKVRQECLV-------SAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKE 838 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq-------~~qekLE~lksQLeElE~kLeELksELesLeES~s 838 (1088)
.|+++.++..+.++..+|+ .+.++++....+...++.++.+|++||...+..+.
T Consensus 347 QEKI~RYQ~Dl~Elt~RLEEQ~~VVeeA~e~~~e~e~r~e~~E~EvD~lksQLADYQQALD 407 (1480)
T COG3096 347 QEKIERYQADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQALD 407 (1480)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555555544 34444444445555555555555555555444433
No 422
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=40.86 E-value=8.1e+02 Score=30.50 Aligned_cols=42 Identities=12% Similarity=0.181 Sum_probs=22.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhhHHHHhh
Q 001390 248 KQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEIL 291 (1088)
Q Consensus 248 KQhlEsvKKIakLEaECqRLr~l~rk~lpgpaa~a~mk~eve~~ 291 (1088)
.+.+....++..|-.-|..|+..+..--++. -.-+..||..|
T Consensus 398 ~~~~~~~~~~~~l~~a~~~l~~~l~~~~~~~--~~p~~~el~~l 439 (582)
T PF09731_consen 398 SEAEDENRRAQQLWLAVDALKSALDSGNAGS--PRPFEDELRAL 439 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC--CCCHHHHHHHH
Confidence 3334445556667777777777776653321 11144555554
No 423
>PRK00846 hypothetical protein; Provisional
Probab=40.83 E-value=1.8e+02 Score=27.47 Aligned_cols=45 Identities=7% Similarity=-0.025 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 001390 808 KSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINE 852 (1088)
Q Consensus 808 kLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le 852 (1088)
+|..+..++.-.+..|++|+..+...+..+..+..+++.+..+++
T Consensus 14 Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~ 58 (77)
T PRK00846 14 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 58 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444555555555555555555555444444443
No 424
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=40.64 E-value=43 Score=32.86 Aligned_cols=46 Identities=30% Similarity=0.298 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhc
Q 001390 860 VARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTK 905 (1088)
Q Consensus 860 eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~ 905 (1088)
..+.+...+..|...|+.++...+..++.+...+..|+..++.+..
T Consensus 41 ~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~~~~ 86 (100)
T PF06428_consen 41 DARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVMESMES 86 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3445556666777778888888888888777777777777776554
No 425
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=40.58 E-value=7.3e+02 Score=31.09 Aligned_cols=40 Identities=28% Similarity=0.336 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 001390 862 RVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLES 902 (1088)
Q Consensus 862 eaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr 902 (1088)
..++.....++..|.+|+.+....++- ...+.++...|..
T Consensus 75 ~~~l~~a~~e~~~L~~eL~~~~~~l~~-L~~L~~i~~~l~~ 114 (593)
T PF06248_consen 75 QPQLRDAAEELQELKRELEENEQLLEV-LEQLQEIDELLEE 114 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 344445555555555555554444442 2244444444443
No 426
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=40.18 E-value=5.4e+02 Score=28.31 Aligned_cols=40 Identities=18% Similarity=0.132 Sum_probs=15.7
Q ss_pred hHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001390 196 QAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEE 235 (1088)
Q Consensus 196 ~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eE 235 (1088)
.+-.+-..|+..|-.+-+++..|+..-..+...-.-+..+
T Consensus 160 ~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~e 199 (206)
T PF14988_consen 160 SIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQE 199 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444333333333333333
No 427
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.13 E-value=4.2e+02 Score=33.52 Aligned_cols=79 Identities=20% Similarity=0.247 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001390 86 KAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKR 165 (1088)
Q Consensus 86 KaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~ 165 (1088)
-.+.+++..+-.++.+..+.+.+.+|+++....+++|..+| +..+..-.....+++.+- .-+|+++..|+++
T Consensus 389 ~t~d~id~i~~l~k~~na~V~~~N~ri~nf~k~~~~sk~~l-------e~~~v~~~~~~VQe~~~Y-~g~ekk~n~LE~e 460 (758)
T COG4694 389 STKDEIDAIKDLIKKANAQVVNHNERIKNFEKQKKSSKEQL-------EKFLVNEFKSDVQEYNKY-CGLEKKINNLEKE 460 (758)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHH
Confidence 45678899999999999999999999999999999999988 333443344445566532 2555666655555
Q ss_pred HHHhhhh
Q 001390 166 LAKLGVE 172 (1088)
Q Consensus 166 L~k~~aE 172 (1088)
...-.+|
T Consensus 461 ~kn~~~e 467 (758)
T COG4694 461 IKNNQEE 467 (758)
T ss_pred HHhhHHH
Confidence 4433333
No 428
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=40.04 E-value=9.7e+02 Score=31.19 Aligned_cols=76 Identities=18% Similarity=0.115 Sum_probs=48.7
Q ss_pred hhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001390 198 EADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRK 273 (1088)
Q Consensus 198 eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk 273 (1088)
...+..|...+..-+..|-.|=++---+.+....+.+++.-....+-....+.--...+|.+||...+.|..-+++
T Consensus 467 Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~ 542 (698)
T KOG0978|consen 467 QEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESK 542 (698)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh
Confidence 3344455566666677777777777777777777777666665555555555555566667777776666666554
No 429
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=39.82 E-value=2.4e+02 Score=29.99 Aligned_cols=10 Identities=30% Similarity=0.285 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 001390 892 TCLELQLQLE 901 (1088)
Q Consensus 892 Kc~eLeeQLE 901 (1088)
-..++.+|+.
T Consensus 116 ~veel~eqV~ 125 (157)
T COG3352 116 IVEELEEQVN 125 (157)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 430
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=39.81 E-value=7.3e+02 Score=29.67 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001390 251 LESVKKIAKLESECQRLR 268 (1088)
Q Consensus 251 lEsvKKIakLEaECqRLr 268 (1088)
+.+.+-+..|||-.|-+|
T Consensus 276 eSLkeiVkdlEA~hQh~~ 293 (561)
T KOG1103|consen 276 ESLKEIVKDLEADHQHLR 293 (561)
T ss_pred HHHHHHHhhhhhhhhhcC
Confidence 333444455666555555
No 431
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=39.38 E-value=1.8e+02 Score=34.32 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=13.0
Q ss_pred hhhhhhhhhHhHHHHHhhHHHHHHHHHHHHHH
Q 001390 915 QDEKQIQTDWEIATASEKLAECQETILNLGKQ 946 (1088)
Q Consensus 915 ~e~~~~kqe~EIaaAAeKLAECQETI~~LGKQ 946 (1088)
++.-..|.|=| |+--+-=-|..++-=
T Consensus 114 ~~kf~yKdEYE------kFKl~~tii~l~~~~ 139 (330)
T PF07851_consen 114 QAKFKYKDEYE------KFKLYLTIILLLFAV 139 (330)
T ss_pred ccccchhhhHH------HHHHHHHHHHHHHHH
Confidence 34445777644 444444445555443
No 432
>PRK00846 hypothetical protein; Provisional
Probab=38.59 E-value=1.4e+02 Score=28.21 Aligned_cols=43 Identities=14% Similarity=0.034 Sum_probs=18.0
Q ss_pred hHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001390 791 VEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDIL 833 (1088)
Q Consensus 791 LesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesL 833 (1088)
++..+..|+.++.--.+-++.+...+-.....|..|+.++..+
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L 53 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHL 53 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433333333333333333333
No 433
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=38.45 E-value=2.4e+02 Score=29.58 Aligned_cols=6 Identities=17% Similarity=0.335 Sum_probs=2.4
Q ss_pred HHHHHH
Q 001390 933 LAECQE 938 (1088)
Q Consensus 933 LAECQE 938 (1088)
|..|||
T Consensus 125 i~~lke 130 (155)
T PF06810_consen 125 IKALKE 130 (155)
T ss_pred HHHHHh
Confidence 333443
No 434
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=38.37 E-value=2.3e+02 Score=30.14 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=10.3
Q ss_pred HhhHHHHHHHhhhhhHHHHHHHHHHH
Q 001390 872 LSSLEVELEDKSNCCEELEATCLELQ 897 (1088)
Q Consensus 872 VsSLE~ELE~er~~lEEl~aKc~eLe 897 (1088)
+..|+.||+..+...+.+..+++.++
T Consensus 163 i~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 163 IEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444443344443333333333
No 435
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=38.23 E-value=5.5e+02 Score=27.78 Aligned_cols=34 Identities=29% Similarity=0.357 Sum_probs=17.8
Q ss_pred HHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHH
Q 001390 823 VSNSQNELDILKKSKEVIEDQVKLQKMINEDLDT 856 (1088)
Q Consensus 823 LeELksELesLeES~selEeQLk~~~e~le~Les 856 (1088)
..++..++..++.++..++.++..+...++.+..
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek 155 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEK 155 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555544444433
No 436
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=38.22 E-value=57 Score=36.97 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=17.6
Q ss_pred HhhHHHHHHHhhhhhHHHHHHHHHHH
Q 001390 872 LSSLEVELEDKSNCCEELEATCLELQ 897 (1088)
Q Consensus 872 VsSLE~ELE~er~~lEEl~aKc~eLe 897 (1088)
....+..|+.+...+++|++++.+||
T Consensus 234 ~~~~de~I~rEeeEIreLE~k~~~Lq 259 (259)
T PF08657_consen 234 SVDTDEDIRREEEEIRELERKKRELQ 259 (259)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33556667777777777777777653
No 437
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=38.01 E-value=3.4e+02 Score=31.58 Aligned_cols=20 Identities=10% Similarity=-0.007 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHHHHHhhh
Q 001390 885 CCEELEATCLELQLQLESVT 904 (1088)
Q Consensus 885 ~lEEl~aKc~eLeeQLEr~e 904 (1088)
.+..+.+.+...+.+++...
T Consensus 166 ~l~~~~~~l~~~~~~l~~~~ 185 (370)
T PRK11578 166 QIKRNQASLDTAKTNLDYTR 185 (370)
T ss_pred HHHHHHHHHHHHHHHHhcCE
Confidence 33444445555556666543
No 438
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=37.97 E-value=2.1e+02 Score=29.68 Aligned_cols=100 Identities=22% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhcCC----CCcccchhhhhh
Q 001390 844 VKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTKSG----IPTDELKQDEKQ 919 (1088)
Q Consensus 844 Lk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~~~----~~~~~~~~e~~~ 919 (1088)
+.........++.+|....-.+..++.-+...+..++.....+++++..|+.++.++.+...+. ............
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~~~~~~~~~~ 101 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQLDDSGVLELPE 101 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcccccccccccc
Q ss_pred hhhhHh-------HHHHHhhHHHHHHHHHHHHHHHh
Q 001390 920 IQTDWE-------IATASEKLAECQETILNLGKQLK 948 (1088)
Q Consensus 920 ~kqe~E-------IaaAAeKLAECQETI~~LGKQLK 948 (1088)
.-+... .+..- |++-|..|.+||.
T Consensus 102 ~~~~~~~~~~~~~~~~~l-----~d~el~~l~~ql~ 132 (160)
T PF13094_consen 102 LPQKSLLEASESRFAPTL-----CDEELLPLLKQLN 132 (160)
T ss_pred ccccccccccccccCccc-----chHHHHHHHHHHH
No 439
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=37.66 E-value=7.8e+02 Score=29.39 Aligned_cols=109 Identities=26% Similarity=0.209 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHH
Q 001390 154 ILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRN 233 (1088)
Q Consensus 154 eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~ 233 (1088)
.|-++|-.+..-+.+.+.+-.+|+ .++..++++...+...+.+++...-..+-|.+.|..|+...-.-...++
T Consensus 110 kL~nqL~~~~~vf~k~k~~~q~LE-------~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~ 182 (401)
T PF06785_consen 110 KLKNQLFHVREVFMKTKGDIQHLE-------GLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELN 182 (401)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555666777666666 6777777777777777777777776666666666666655555445555
Q ss_pred HHHHHhHHhHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHhcC
Q 001390 234 EEREFNRRTADESHKQHLESVK---KIAKLESECQRLRVLVRKRL 275 (1088)
Q Consensus 234 eEre~s~ksaEaA~KQhlEsvK---KIakLEaECqRLr~l~rk~l 275 (1088)
+|-.- +-..||.-+.+ -|.+||..+|.|--.+|--|
T Consensus 183 ~eyQa------tf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLL 221 (401)
T PF06785_consen 183 DEYQA------TFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLL 221 (401)
T ss_pred HHhhc------ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44321 22233333332 36788888888777776544
No 440
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=37.50 E-value=7e+02 Score=28.82 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=14.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHH
Q 001390 77 AQEAITGREKAEAEVVSLKQELDAAL 102 (1088)
Q Consensus 77 aeeav~GweKaEaE~~slKkqLe~~~ 102 (1088)
+-..|..-|.|.-++.=|+..|+++.
T Consensus 154 ~~~~l~DLesa~vkV~WLR~~L~Ei~ 179 (269)
T PF05278_consen 154 MIATLKDLESAKVKVDWLRSKLEEIL 179 (269)
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHH
Confidence 33445555666666666666666644
No 441
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=37.44 E-value=2.9e+02 Score=29.91 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=20.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001390 827 QNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQ 870 (1088)
Q Consensus 827 ksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqe 870 (1088)
+..-..|..-+..+-+|+..+...++.|...+..+..++..+..
T Consensus 73 qqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~ 116 (182)
T PF15035_consen 73 QQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRD 116 (182)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444445555555555555444444444444444333
No 442
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=37.32 E-value=3.7e+02 Score=25.53 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001390 852 EDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLE 901 (1088)
Q Consensus 852 e~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLE 901 (1088)
.+.+.+++..-.|+..++++|-.|+..-...+..++ ..|..|..+|+
T Consensus 28 ~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YE---eEI~rLr~eLe 74 (79)
T PF08581_consen 28 DEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYE---EEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 334444555556666666666666666555555553 45555555555
No 443
>PF08598 Sds3: Sds3-like; InterPro: IPR013907 Repression of gene transcription is mediated by histone deacetylases containing repressor-co-repressor complexes, which are recruited to promoters of target genes via interactions with sequence-specific transcription factors. The co-repressor complex contains a core of at least seven proteins []. This entry represents the conserved region found in Sds3, Dep1 and BRMS1-homologue p40 proteins. ; PDB: 2XUS_A.
Probab=37.23 E-value=47 Score=35.39 Aligned_cols=77 Identities=22% Similarity=0.311 Sum_probs=23.9
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHH--------HhhhhhHHHHHHHHHHHHHHhHHHHH
Q 001390 79 EAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMD--------QLHFVREEQEQRIHDAVMKASMEFEQ 150 (1088)
Q Consensus 79 eav~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmk--------QLr~~rEEqEqki~da~~kks~E~Ek 150 (1088)
+|+.-+.+++.+...+|.++ +.|++..|+..|..|+. .+..+.+..+.++..+-...--..+.
T Consensus 2 ~~~~~l~~le~~F~~~Rd~l---------Y~e~l~~L~~el~~l~~~t~pe~l~~l~~l~~~rd~~l~~a~~~~~~~l~~ 72 (205)
T PF08598_consen 2 EALDDLAKLEKQFAELRDQL---------YRERLAQLQQELEQLQEGTHPEYLRRLQDLEERRDERLRVAEILREYRLES 72 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHCHHHH------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666555 78888888777777763 34444444444444333333333334
Q ss_pred HHHHHHHHHHHHHH
Q 001390 151 SLMILEEKLAETSK 164 (1088)
Q Consensus 151 ~~~eLE~kL~El~k 164 (1088)
++.+++.+...+..
T Consensus 73 i~~~~~~e~~~a~~ 86 (205)
T PF08598_consen 73 IEREYEAERQQAEQ 86 (205)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444433333
No 444
>PF15294 Leu_zip: Leucine zipper
Probab=37.14 E-value=3.8e+02 Score=31.02 Aligned_cols=29 Identities=31% Similarity=0.299 Sum_probs=14.6
Q ss_pred HHHhhcchHHHHHHHhhHHHHHHHHHHHH
Q 001390 203 ALMVRLDSTEKENASLKYEVRVLGKELEI 231 (1088)
Q Consensus 203 ~Lq~rLE~~EKEn~sLKyEl~vlqkELEI 231 (1088)
.|+..|..+--+.-.++..+.+.+++|+-
T Consensus 219 ~L~e~L~~~KhelL~~QeqL~~aekeLek 247 (278)
T PF15294_consen 219 ALEETLQSCKHELLRVQEQLSLAEKELEK 247 (278)
T ss_pred HHHHHHHHHHHHHHhcchhhhcchhhHHH
Confidence 34444444444455555555555555543
No 445
>PRK00295 hypothetical protein; Provisional
Probab=37.13 E-value=1.7e+02 Score=26.81 Aligned_cols=33 Identities=9% Similarity=0.001 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHH
Q 001390 815 QLQESQKIVSNSQNELDILKKSKEVIEDQVKLQ 847 (1088)
Q Consensus 815 QLeElE~kLeELksELesLeES~selEeQLk~~ 847 (1088)
++.-.+..|++|+..+...+..+..+..++..+
T Consensus 13 kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 13 RQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444333333
No 446
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=37.13 E-value=3.4e+02 Score=28.26 Aligned_cols=75 Identities=16% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Q 001390 829 ELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESV 903 (1088)
Q Consensus 829 ELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~ 903 (1088)
++..+...++.....+..+...+...+.+|+.+.+...+...--..|..++..........+.+|++|..+.+.+
T Consensus 20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~l 94 (135)
T TIGR03495 20 RLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDL 94 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
No 447
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=37.06 E-value=2.9e+02 Score=31.25 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHH
Q 001390 856 TQLKVARVDLNEACQKLSSLEVEL 879 (1088)
Q Consensus 856 sqL~eleaEl~qlqeKVsSLE~EL 879 (1088)
.+..+++.++.+++.++++|..|+
T Consensus 221 ae~seLq~r~~~l~~~L~~L~~e~ 244 (289)
T COG4985 221 AEKSELQKRLAQLQTELDALRAEL 244 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333444444444444444444443
No 448
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=37.05 E-value=8.8e+02 Score=29.80 Aligned_cols=159 Identities=9% Similarity=0.034 Sum_probs=0.0
Q ss_pred hhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhh-HHHHHHHHHHH
Q 001390 786 SEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINED-LDTQLKVARVD 864 (1088)
Q Consensus 786 eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~-LesqL~eleaE 864 (1088)
+...++.+...++.+.+..+++.-......++.++..+++|...+-........+-.++..++....+ ....++.+..-
T Consensus 145 e~~~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~ll 224 (446)
T KOG4438|consen 145 ELRKQLDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALKLL 224 (446)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhHHHHH----HHhhhhhHHHHHHHHHHHHHHHhhhcCCCCcccchhhhhhhhhhHhHHHHHhhHHHHH---
Q 001390 865 LNEACQKLSSLEVEL----EDKSNCCEELEATCLELQLQLESVTKSGIPTDELKQDEKQIQTDWEIATASEKLAECQ--- 937 (1088)
Q Consensus 865 l~qlqeKVsSLE~EL----E~er~~lEEl~aKc~eLeeQLEr~e~~~~~~~~~~~e~~~~kqe~EIaaAAeKLAECQ--- 937 (1088)
+-++.+-...|...+ ++....+++..-.+.+.+..+..+..+ ........+----=+.|+-++-.|+.+|=
T Consensus 225 v~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K--~~iL~ekv~~~qti~~e~~~~lk~i~~~~~e~ 302 (446)
T KOG4438|consen 225 VVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEK--AKILEEKVTNLQTIEKELKALLKKISSDGVEY 302 (446)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhh
Q ss_pred ----------HHHHHHHHH
Q 001390 938 ----------ETILNLGKQ 946 (1088)
Q Consensus 938 ----------ETI~~LGKQ 946 (1088)
++|+.|-.|
T Consensus 303 d~~Et~~v~lke~~~Le~q 321 (446)
T KOG4438|consen 303 DSLETKVVELKEILELEDQ 321 (446)
T ss_pred hhhHHHHHHHHHHHHHHHH
No 449
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=36.88 E-value=4.3e+02 Score=26.12 Aligned_cols=26 Identities=23% Similarity=0.334 Sum_probs=9.5
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001390 874 SLEVELEDKSNCCEELEATCLELQLQ 899 (1088)
Q Consensus 874 SLE~ELE~er~~lEEl~aKc~eLeeQ 899 (1088)
.|+..++.....+.++..++..+...
T Consensus 97 ~l~~~~~~l~~~l~~l~~~~~~i~~~ 122 (126)
T TIGR00293 97 ELEKAIEKLQEALAELASRAQQLEQE 122 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 450
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=36.80 E-value=6.8e+02 Score=28.43 Aligned_cols=117 Identities=15% Similarity=0.068 Sum_probs=0.0
Q ss_pred hhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHh----------hhHHH
Q 001390 787 EFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMIN----------EDLDT 856 (1088)
Q Consensus 787 eLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~l----------e~Les 856 (1088)
.+...+..+..+...+...+-.......++...+..+..++.++..++..+..++.+++.....+ +....
T Consensus 63 ~l~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS~~~~d~~~~ 142 (327)
T TIGR02971 63 QLDEAKARLAQVRAGAKKGEIAAQRAARAAAKLFKDVAAQQATLNRLEAELETAQREVDRYRSLFRDGAVSASDLDSKAL 142 (327)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHh----------------hHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Q 001390 857 QLKVARVDLNEACQKLS----------------SLEVELEDKSNCCEELEATCLELQLQLESV 903 (1088)
Q Consensus 857 qL~eleaEl~qlqeKVs----------------SLE~ELE~er~~lEEl~aKc~eLeeQLEr~ 903 (1088)
.+..++.++..+...+. .-..++...+..+..+.+.+...+.+|...
T Consensus 143 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~l~~~ 205 (327)
T TIGR02971 143 KLRTAEEELEEALASRSEQIDGARAALASLAEEVRETDVDLAQAEVKSALEAVQQAEALLELT 205 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 451
>PRK00736 hypothetical protein; Provisional
Probab=36.64 E-value=1.6e+02 Score=26.96 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHH
Q 001390 814 SQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQK 848 (1088)
Q Consensus 814 sQLeElE~kLeELksELesLeES~selEeQLk~~~ 848 (1088)
.++.-.+..|++|+..+...+..+..+..++..+.
T Consensus 12 ~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~ 46 (68)
T PRK00736 12 IRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALT 46 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444433
No 452
>PRK04406 hypothetical protein; Provisional
Probab=36.62 E-value=1.7e+02 Score=27.35 Aligned_cols=20 Identities=10% Similarity=-0.129 Sum_probs=7.8
Q ss_pred hHhhhhHHHHHHHHHHHhHH
Q 001390 791 VEAGNKVRQECLVSAIDKSN 810 (1088)
Q Consensus 791 LesEK~eLE~rLq~~qekLE 810 (1088)
++..+.+|+.++.--.+-++
T Consensus 9 le~Ri~~LE~~lAfQE~tIe 28 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIE 28 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444433333333
No 453
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.42 E-value=6.8e+02 Score=28.35 Aligned_cols=22 Identities=14% Similarity=0.295 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHh
Q 001390 82 TGREKAEAEVVSLKQELDAALQ 103 (1088)
Q Consensus 82 ~GweKaEaE~~slKkqLe~~~q 103 (1088)
+|.+..++++-..+.-.+.+.+
T Consensus 15 ~l~d~~~~~i~n~~s~~D~f~q 36 (246)
T KOG4657|consen 15 SLGDICEKDIHNQRSKIDSFIQ 36 (246)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677666666666655
No 454
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=36.05 E-value=4.4e+02 Score=26.02 Aligned_cols=29 Identities=14% Similarity=0.265 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhhHHH
Q 001390 861 ARVDLNEACQKLSSLEVELEDKSNCCEEL 889 (1088)
Q Consensus 861 leaEl~qlqeKVsSLE~ELE~er~~lEEl 889 (1088)
++..+..+...+..|+..+.+++.....+
T Consensus 91 l~~~~~~l~~~~~~l~~~l~~l~~~~~~i 119 (126)
T TIGR00293 91 LKKRIEELEKAIEKLQEALAELASRAQQL 119 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444333
No 455
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=36.02 E-value=1.5e+02 Score=29.54 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHH
Q 001390 809 SNSLMSQLQESQKIVSNSQNELDILKKSKEVIE 841 (1088)
Q Consensus 809 LE~lksQLeElE~kLeELksELesLeES~selE 841 (1088)
+..+..++..+-.++.+|+.++..+-+++..+.
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~ 42 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENARLR 42 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444433
No 456
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=35.92 E-value=3.8e+02 Score=25.22 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhhHHHHH
Q 001390 861 ARVDLNEACQKLSSLEVELEDKSNCCEELEA 891 (1088)
Q Consensus 861 leaEl~qlqeKVsSLE~ELE~er~~lEEl~a 891 (1088)
++.....+...+..|+..+.+....+.++..
T Consensus 67 L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~ 97 (106)
T PF01920_consen 67 LEERIEKLEKEIKKLEKQLKYLEKKLKELKK 97 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444333
No 457
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=35.91 E-value=2e+02 Score=36.02 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHh
Q 001390 812 LMSQLQESQKIVSNSQNELDILKKS 836 (1088)
Q Consensus 812 lksQLeElE~kLeELksELesLeES 836 (1088)
+..+.+++.-.|++++..++.++.+
T Consensus 98 le~krqel~seI~~~n~kiEelk~~ 122 (907)
T KOG2264|consen 98 LEVKRQELNSEIEEINTKIEELKRL 122 (907)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 458
>PF14992 TMCO5: TMCO5 family
Probab=35.84 E-value=4.9e+02 Score=30.15 Aligned_cols=58 Identities=14% Similarity=0.198 Sum_probs=35.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhH
Q 001390 140 AVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADS 201 (1088)
Q Consensus 140 a~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei 201 (1088)
....+..+-|.....|+.+|......+.+.+.+| ....+|+.-+.+|..+++..+.+-
T Consensus 22 ~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~----~~~~~~e~~l~~le~e~~~LE~~n 79 (280)
T PF14992_consen 22 SLLQKIQEKEGAIQSLEREITKMDHIADRSEEED----IISEERETDLQELELETAKLEKEN 79 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccCchhHHh----hhhhchHHHHHHHHhhhHHHhhhh
Confidence 3455567777778888888888877777766554 233345555555555554444333
No 459
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.80 E-value=1.9e+02 Score=27.08 Aligned_cols=49 Identities=20% Similarity=0.259 Sum_probs=24.3
Q ss_pred HHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001390 833 LKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELED 881 (1088)
Q Consensus 833 LeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~ 881 (1088)
+++.+.++|..+-.+..-++.|+..+.+....+..++.++..|...+.+
T Consensus 6 lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~ 54 (72)
T COG2900 6 LEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKD 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444445555555555555555555555555444433
No 460
>PRK02793 phi X174 lysis protein; Provisional
Probab=35.64 E-value=1.8e+02 Score=26.91 Aligned_cols=51 Identities=16% Similarity=0.115 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhh
Q 001390 854 LDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVT 904 (1088)
Q Consensus 854 LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e 904 (1088)
++.++..+++.+.-+..-|+.|...+-.-.+.+..+.+++..|..+|....
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344445555555555555555555555555556666666667767776554
No 461
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=35.21 E-value=3.7e+02 Score=29.35 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 001390 851 NEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNC 885 (1088)
Q Consensus 851 le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~ 885 (1088)
...+...++.++-.+..+-.|++.+=.-|+.....
T Consensus 109 ~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~ 143 (189)
T TIGR02132 109 APALKKDVTKLKQDIKSLDKKLDKILELLEGQQKT 143 (189)
T ss_pred CchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 33444445555555555555555444444433333
No 462
>PRK00295 hypothetical protein; Provisional
Probab=35.03 E-value=2e+02 Score=26.27 Aligned_cols=20 Identities=10% Similarity=-0.150 Sum_probs=8.1
Q ss_pred hhhHHHHHHHHHHHhHHHHH
Q 001390 794 GNKVRQECLVSAIDKSNSLM 813 (1088)
Q Consensus 794 EK~eLE~rLq~~qekLE~lk 813 (1088)
.+.+|+.++.--.+-++.+.
T Consensus 6 Ri~~LE~kla~qE~tie~Ln 25 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALN 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333333
No 463
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=34.77 E-value=1.6e+02 Score=27.09 Aligned_cols=48 Identities=21% Similarity=0.198 Sum_probs=36.0
Q ss_pred hHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhH
Q 001390 196 QAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTA 243 (1088)
Q Consensus 196 ~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksa 243 (1088)
.++..++.|-.+.+-+..+|..|+.++.....|..-+.+..+.++..+
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rv 51 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKV 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777788888888888888888888888777777666665443
No 464
>PF10304 DUF2411: Domain of unknown function (DUF2411); InterPro: IPR019414 This entry represents a 38 residue domain of unknown function that is found at the extreme C-terminal end of some HEAT repeats.
Probab=34.67 E-value=28 Score=28.09 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=19.9
Q ss_pred hcccchhHHHHhHHHHHHHhhhh
Q 001390 62 ECNAKDDLVKKHAKMAQEAITGR 84 (1088)
Q Consensus 62 ~~~~kd~lvkqh~kvaeeav~Gw 84 (1088)
..+..|.+|++||.+|-|.+.+|
T Consensus 14 ~~~D~D~lvr~hA~~~Le~Le~~ 36 (36)
T PF10304_consen 14 ESTDNDDLVREHAQDALEELEAW 36 (36)
T ss_pred HHhCCcHHHHHHHHHHHHHHhcC
Confidence 44667999999999999988887
No 465
>PF15294 Leu_zip: Leucine zipper
Probab=34.61 E-value=7.9e+02 Score=28.55 Aligned_cols=34 Identities=21% Similarity=0.140 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhhhhHHH-HHHHHH
Q 001390 91 VVSLKQELDAALQQRDTGEERLIHLDAA-LKECMD 124 (1088)
Q Consensus 91 ~~slKkqLe~~~qq~v~lEErvkhLd~a-LKecmk 124 (1088)
+.-+++.|..++++...+.-.++.++.. |-+-+.
T Consensus 62 ~lllrql~~qAek~~lkl~~diselEn~eLLe~i~ 96 (278)
T PF15294_consen 62 VLLLRQLFSQAEKWYLKLQTDISELENRELLEQIA 96 (278)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 4456777888999888888777777665 444333
No 466
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=34.49 E-value=4.7e+02 Score=25.92 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHH
Q 001390 859 KVARVDLNEACQKLSSLEVELEDKSNCCEELEATC 893 (1088)
Q Consensus 859 ~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc 893 (1088)
..++-.+..+...++.++.++.+.+..+..+...+
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l 124 (129)
T cd00584 90 EFLDKKIEELTKQIEKLQKELAKLKDQINTLEAEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444445555555444444444443
No 467
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=34.27 E-value=7.6e+02 Score=29.01 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHH
Q 001390 146 MEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVL 225 (1088)
Q Consensus 146 ~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vl 225 (1088)
.+.+..+.-.+.++..+...|+++-.| ..++|. .+...-..+..+++-|++++-....+++.++|....+
T Consensus 230 ~QM~s~~~nIe~~~~~~~~~Ldklh~e---it~~LE-------kI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~ 299 (384)
T KOG0972|consen 230 EQMNSMHKNIEQKVGNVGPYLDKLHKE---ITKALE-------KIASREKSLNNQLASLMQKFRRATDTLSELREKYKQA 299 (384)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHH---HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555666666666666666555 222221 1111112344555566666666666666666655555
Q ss_pred HHHHHHHHH
Q 001390 226 GKELEIRNE 234 (1088)
Q Consensus 226 qkELEIr~e 234 (1088)
+--.+-|++
T Consensus 300 ~~gv~~rT~ 308 (384)
T KOG0972|consen 300 SVGVSSRTE 308 (384)
T ss_pred cccHHHHHH
Confidence 444444433
No 468
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=34.07 E-value=1.3e+03 Score=30.91 Aligned_cols=90 Identities=14% Similarity=0.150 Sum_probs=58.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHH--HHhHHHHHHH
Q 001390 75 KMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVM--KASMEFEQSL 152 (1088)
Q Consensus 75 kvaeeav~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~--kks~E~Ek~~ 152 (1088)
+|.-++=.||-++-+.++-+-..++..+.+-...+..-...-+-.++.+..+-.-++.....+.+.+. +...+..+.+
T Consensus 550 ~~~~r~rq~~~~~r~~ld~leaa~e~lE~r~~~~e~~~~e~~se~e~~l~~l~l~~el~~~~~~d~ls~mkd~~~~~q~~ 629 (984)
T COG4717 550 LVQSRIRQHWQQLRKALDQLEAAYEALEGRFAAAEAAMAEWQSEWEEALDELGLSRELSPEQQLDILSTMKDLKKLMQKK 629 (984)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 44555667788888888888888887777777777777777777777777776555555544444432 3345555555
Q ss_pred HHHHHHHHHHHH
Q 001390 153 MILEEKLAETSK 164 (1088)
Q Consensus 153 ~eLE~kL~El~k 164 (1088)
.+|..+++.+-.
T Consensus 630 ~EL~~q~~~L~e 641 (984)
T COG4717 630 AELTHQVARLRE 641 (984)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 469
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=34.01 E-value=1.5e+02 Score=28.60 Aligned_cols=56 Identities=21% Similarity=0.204 Sum_probs=29.3
Q ss_pred HhhhhHHHHHHHHHHHhHHHHHHHHHHHH---HHHHhhHHHHHHHHHhHHHHHHHHHHH
Q 001390 792 EAGNKVRQECLVSAIDKSNSLMSQLQESQ---KIVSNSQNELDILKKSKEVIEDQVKLQ 847 (1088)
Q Consensus 792 esEK~eLE~rLq~~qekLE~lksQLeElE---~kLeELksELesLeES~selEeQLk~~ 847 (1088)
-.+|+.++..+..|..+++....++...+ ..-..+..++..+.+.+...|.+|+.+
T Consensus 4 ~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~L 62 (85)
T PF15188_consen 4 AKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLL 62 (85)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 34666777777777777776666665432 222333344444444444444444433
No 470
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=33.83 E-value=9.1e+02 Score=29.03 Aligned_cols=132 Identities=14% Similarity=0.211 Sum_probs=0.0
Q ss_pred hhhhhHhhhhHHHHHHH-HHHHhHHHHHHHHHHHHHHH--HhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001390 787 EFINVEAGNKVRQECLV-SAIDKSNSLMSQLQESQKIV--SNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARV 863 (1088)
Q Consensus 787 eLEqLesEK~eLE~rLq-~~qekLE~lksQLeElE~kL--eELksELesLeES~selEeQLk~~~e~le~LesqL~elea 863 (1088)
.+.++...+..+..+|. .++..+..-+.++..+...+ ......+......+..+..+|... +...+...+.
T Consensus 261 ~~~e~~q~Ld~l~~rL~~a~~~~L~~~~~~L~~L~~rL~~~~P~~~l~~~~q~L~~l~~rL~~a------~~~~L~~~~~ 334 (438)
T PRK00286 261 DRAELLQRLQQLQQRLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQRA------LERRLRLAKQ 334 (438)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhcCCCCcccchhhhhhhhhhHhHHHHHhhHHHHHHHHHHH
Q 001390 864 DLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTKSGIPTDELKQDEKQIQTDWEIATASEKLAECQETILNL 943 (1088)
Q Consensus 864 El~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~~~~~~~~~~~e~~~~kqe~EIaaAAeKLAECQETI~~L 943 (1088)
.+..+..++..+ .-...+...+.+|+.+.. .+.+ +...+|..++..+..|
T Consensus 335 ~L~~l~~rL~~l------------sP~~~L~r~~qrL~~L~~-------------rL~~-----a~~~~L~~~~~rL~~l 384 (438)
T PRK00286 335 RLERLSQRLQQQ------------NPQRRIERAQQRLEQLEQ-------------RLRR-----AMRRQLKRKRQRLEAL 384 (438)
T ss_pred HHHHHHHHHhhc------------CHHHHHHHHHHHHHHHHH-------------HHHH-----HHHHHHHHHHHHHHHH
Q ss_pred HHHHhhccCch
Q 001390 944 GKQLKALASPR 954 (1088)
Q Consensus 944 GKQLKaLa~~~ 954 (1088)
...|.+|-|..
T Consensus 385 ~~rL~~lsP~~ 395 (438)
T PRK00286 385 AQQLEALSPLA 395 (438)
T ss_pred HHHHHhCCChh
No 471
>PRK00736 hypothetical protein; Provisional
Probab=33.58 E-value=1.9e+02 Score=26.39 Aligned_cols=49 Identities=14% Similarity=0.199 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhh
Q 001390 856 TQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVT 904 (1088)
Q Consensus 856 sqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e 904 (1088)
.++..+++.+.-+..-|+.|...+-.-.+.+..+..+|..|.++|....
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444444444555555555555555566666666666666544
No 472
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=33.45 E-value=8.9e+02 Score=28.80 Aligned_cols=65 Identities=14% Similarity=0.147 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhh
Q 001390 154 ILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLK 219 (1088)
Q Consensus 154 eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLK 219 (1088)
..+.||.++=..|.+...=...|= .|..|=+.+..|..+.+.|..-+..|......+...+...+
T Consensus 292 ~~e~KI~eLy~~l~~~~~~~~~lP-~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~ 356 (388)
T PF04912_consen 292 EQESKIDELYEILPRWDPYAPSLP-SLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWE 356 (388)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677776666666555443333 66778888888888887776655554444444444433333
No 473
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=33.36 E-value=67 Score=31.61 Aligned_cols=19 Identities=26% Similarity=0.330 Sum_probs=7.2
Q ss_pred HHHHHHHhhHHHHHHHHHh
Q 001390 818 ESQKIVSNSQNELDILKKS 836 (1088)
Q Consensus 818 ElE~kLeELksELesLeES 836 (1088)
.++.....+..+++.|..+
T Consensus 12 ~ae~~~~~ie~ElEeLTas 30 (100)
T PF06428_consen 12 EAEQEKEQIESELEELTAS 30 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 474
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=33.23 E-value=3.8e+02 Score=29.57 Aligned_cols=25 Identities=16% Similarity=0.068 Sum_probs=17.4
Q ss_pred hhhhhHhhhhHHHHHHHHHHHhHHH
Q 001390 787 EFINVEAGNKVRQECLVSAIDKSNS 811 (1088)
Q Consensus 787 eLEqLesEK~eLE~rLq~~qekLE~ 811 (1088)
|.-.|+.++.+|+..|..++...+.
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556777777777777777766654
No 475
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.14 E-value=7.9e+02 Score=29.37 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=40.9
Q ss_pred chhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHH
Q 001390 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVI 840 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~sel 840 (1088)
+|+++++.++.+.+..+-+++..-...+..-++.+|+++..|+...+-|....+++
T Consensus 224 eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~ea 279 (365)
T KOG2391|consen 224 EEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREA 279 (365)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 67777777777777777777777777777777777777777777777777766663
No 476
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=33.10 E-value=1.1e+03 Score=29.93 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhhccCc
Q 001390 933 LAECQETILNLGKQLKALASP 953 (1088)
Q Consensus 933 LAECQETI~~LGKQLKaLa~~ 953 (1088)
|+.||.-|--+..-.++|.+.
T Consensus 581 ~~~~k~~~s~hs~~~~slt~~ 601 (607)
T KOG0240|consen 581 LRPCKLLISQHSAKKKSLTES 601 (607)
T ss_pred hHHHHHHHHHHHHHHhccchh
Confidence 788999998888888888553
No 477
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=33.00 E-value=1.2e+03 Score=30.21 Aligned_cols=97 Identities=21% Similarity=0.195 Sum_probs=50.7
Q ss_pred hHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHH--HHHHh
Q 001390 196 QAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLR--VLVRK 273 (1088)
Q Consensus 196 ~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr--~l~rk 273 (1088)
.....+..+........+++..|+.++..+.+++.-+........+....+++..-......+.++..+..-. ...||
T Consensus 224 ~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~ 303 (670)
T KOG0239|consen 224 DLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERR 303 (670)
T ss_pred hHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555666666666666666666666666666555555555555544444333333333332222 23445
Q ss_pred cCCChHHHhhhhHHHHhh-cCCChhhhhc
Q 001390 274 RLPGPAALAKMKNEVEIL-GRESPETRRK 301 (1088)
Q Consensus 274 ~lpgpaa~a~mk~eve~~-~~~~~~~r~~ 301 (1088)
+| +|+|--| |+..+-=|-|
T Consensus 304 kL---------~N~i~eLkGnIRV~CRvR 323 (670)
T KOG0239|consen 304 KL---------HNEILELKGNIRVFCRVR 323 (670)
T ss_pred HH---------HHHHHHhhcCceEEEEec
Confidence 44 5666554 6665444433
No 478
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=32.61 E-value=1.1e+02 Score=27.11 Aligned_cols=21 Identities=38% Similarity=0.346 Sum_probs=9.1
Q ss_pred HHHHhhcchHHHHHHHhhHHH
Q 001390 202 NALMVRLDSTEKENASLKYEV 222 (1088)
Q Consensus 202 ~~Lq~rLE~~EKEn~sLKyEl 222 (1088)
..|...+..+..++..|+.++
T Consensus 43 ~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 43 EELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 333444444444444444433
No 479
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.15 E-value=1.4e+03 Score=30.66 Aligned_cols=63 Identities=17% Similarity=0.295 Sum_probs=50.5
Q ss_pred hhHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001390 67 DDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMK 143 (1088)
Q Consensus 67 d~lvkqh~kvaeeav~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~k 143 (1088)
++||.+|-.+..-+|+-+-++-..+. ..++|+.++...|+.|..-|..-|+|=.+--++.+..
T Consensus 67 q~lv~~H~q~~t~~i~sy~~i~s~It--------------~~rerI~~vK~~L~~~k~ll~~~rdeLqklw~~~~q~ 129 (982)
T KOG3691|consen 67 QELVHTHKQDFTTGISSYGEISSGIT--------------NCRERIHNVKNNLEACKELLNTRRDELQKLWAENSQY 129 (982)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhhhH
Confidence 67899999999999988877776666 5689999999999999999977777666555554443
No 480
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=32.12 E-value=6.8e+02 Score=27.07 Aligned_cols=8 Identities=0% Similarity=0.355 Sum_probs=3.6
Q ss_pred hHHHHHHH
Q 001390 669 LSDILQQF 676 (1088)
Q Consensus 669 l~~~Le~f 676 (1088)
+|.+.+.+
T Consensus 56 Icpvr~~l 63 (189)
T PF10211_consen 56 ICPVREEL 63 (189)
T ss_pred ccHHHHHH
Confidence 44444443
No 481
>PF14282 FlxA: FlxA-like protein
Probab=32.11 E-value=2.1e+02 Score=28.20 Aligned_cols=16 Identities=25% Similarity=0.090 Sum_probs=6.0
Q ss_pred hhhhHhhhhHHHHHHH
Q 001390 788 FINVEAGNKVRQECLV 803 (1088)
Q Consensus 788 LEqLesEK~eLE~rLq 803 (1088)
++.|+..+..|...|.
T Consensus 21 I~~L~~Qi~~Lq~ql~ 36 (106)
T PF14282_consen 21 IEQLQKQIKQLQEQLQ 36 (106)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 482
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=31.99 E-value=4.7e+02 Score=29.53 Aligned_cols=121 Identities=13% Similarity=0.126 Sum_probs=0.0
Q ss_pred hhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHH---HHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001390 786 SEFINVEAGNKVRQECLVSAIDKSNSLMSQLQES---QKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVAR 862 (1088)
Q Consensus 786 eeLEqLesEK~eLE~rLq~~qekLE~lksQLeEl---E~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~ele 862 (1088)
..++.++.++.+-+.-=.-+..+.-++.++-... -+++++|+.|...+=+-+.+++++.+.-+...+.+.+.|.++-
T Consensus 5 ~~~~~~~~~k~n~~~~n~q~~skstgt~s~~~q~~l~nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTt 84 (230)
T PF03904_consen 5 QLRNSMEEEKNNKETNNTQTNSKSTGTQSQKTQMSLENEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETT 84 (230)
T ss_pred HHHhhhHHHhccccccchhhhhhccCCCcHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH-----HhhHHHHHHHh--hhhhHHHHHHHHHHHHHHHhhhcC
Q 001390 863 VDLNEACQK-----LSSLEVELEDK--SNCCEELEATCLELQLQLESVTKS 906 (1088)
Q Consensus 863 aEl~qlqeK-----VsSLE~ELE~e--r~~lEEl~aKc~eLeeQLEr~e~~ 906 (1088)
..+..--.+ +..|..+|... ...-..+...+.++.++++++..+
T Consensus 85 kdf~~~~~k~~~dF~~~Lq~~Lk~V~tde~k~~~~~ei~k~r~e~~~ml~e 135 (230)
T PF03904_consen 85 KDFIDKTEKVHNDFQDILQDELKDVDTDELKNIAQNEIKKVREENKSMLQE 135 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>PRK04325 hypothetical protein; Provisional
Probab=31.98 E-value=2.2e+02 Score=26.45 Aligned_cols=49 Identities=12% Similarity=0.144 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhh
Q 001390 856 TQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVT 904 (1088)
Q Consensus 856 sqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e 904 (1088)
.++..+++.+.-+..-|+.|...+-.-.+.+..+.++|..|..+|..+.
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444455555555555555555555666666666766666554
No 484
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=31.89 E-value=2.5e+02 Score=31.80 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=18.8
Q ss_pred hHhhhHHHHHhhcchHHHHHHHhhHHHH
Q 001390 196 QAEADSNALMVRLDSTEKENASLKYEVR 223 (1088)
Q Consensus 196 ~~eaei~~Lq~rLE~~EKEn~sLKyEl~ 223 (1088)
++.++..+||.|+..++-++.+|+.|++
T Consensus 218 ~~~ae~seLq~r~~~l~~~L~~L~~e~~ 245 (289)
T COG4985 218 HYVAEKSELQKRLAQLQTELDALRAELE 245 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4555666777777777777777776654
No 485
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=31.80 E-value=8.2e+02 Score=27.92 Aligned_cols=167 Identities=19% Similarity=0.203 Sum_probs=0.0
Q ss_pred HhhhHHHHHHHHh-hcccchhHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhh
Q 001390 49 VKNLNDKLFSALA-ECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLH 127 (1088)
Q Consensus 49 ~k~l~ekLs~a~~-~~~~kd~lvkqh~kvaeeav~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr 127 (1088)
+..|...|..-+. .+.+++.=.....+.....+....+--.-=.....-|..+.+....+++.+..+|.+|.+..+++
T Consensus 128 l~~l~~~le~~l~~~~~~~~gg~~~~~~~~~~~~~~Y~~~p~Kg~ka~evL~~fl~~~~~~~~~ilq~d~~L~~~ek~~- 206 (297)
T PF02841_consen 128 LQELFQPLEEKLKQGCYSKPGGYQLFLKELDELEKEYEQEPGKGVKAEEVLQEFLQSKESMENSILQADQQLTEKEKEI- 206 (297)
T ss_dssp HHHHHHHHHHHHHCTTTSSTTHHHHHHHHHHHHHHHHHHSS---TTHHHHHHHHHHHCHHHHHHHHHH-TTS-HHHHHH-
T ss_pred HHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhh
Q 001390 128 FVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVR 207 (1088)
Q Consensus 128 ~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~r 207 (1088)
+.++...+++......++......+..+.+-...+..-... |..-|..... .+..+...+-..--..+.+
T Consensus 207 ----~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~---L~ekme~e~~---~~~~e~e~~l~~k~~eq~~ 276 (297)
T PF02841_consen 207 ----EEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQ---LKEKMEEERE---QLLQEQERLLEQKLQEQEE 276 (297)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q ss_pred c--chHHHHHHHhhHHHHHHH
Q 001390 208 L--DSTEKENASLKYEVRVLG 226 (1088)
Q Consensus 208 L--E~~EKEn~sLKyEl~vlq 226 (1088)
+ +..+.+...++.||..++
T Consensus 277 ~l~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 277 LLKEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcC
No 486
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=31.65 E-value=1.7e+02 Score=35.22 Aligned_cols=77 Identities=25% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001390 804 SAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELED 881 (1088)
Q Consensus 804 ~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~ 881 (1088)
....++..+..+++++..++..++..+..++.... ...........+..+...+..+..++..+..++..|+.+++.
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLKKLKK-QGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 487
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=31.60 E-value=5.9e+02 Score=30.22 Aligned_cols=13 Identities=23% Similarity=0.562 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHH
Q 001390 689 DFNKFANDLSIAL 701 (1088)
Q Consensus 689 ~l~~f~~el~~~L 701 (1088)
..++||.+|..+|
T Consensus 62 ~~~eYv~~l~kaL 74 (342)
T PF06632_consen 62 EVEEYVQELKKAL 74 (342)
T ss_dssp -HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4677777777766
No 488
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=31.56 E-value=2e+02 Score=34.65 Aligned_cols=78 Identities=19% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhH
Q 001390 797 VRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSL 875 (1088)
Q Consensus 797 eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSL 875 (1088)
.+..+++.+..+++.++.++.+++..|..++.... ....-......++.+...+..+..+++.++.++..+.+.+...
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLKKLKK-QGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 489
>PLN03188 kinesin-12 family protein; Provisional
Probab=31.29 E-value=8.4e+02 Score=33.79 Aligned_cols=133 Identities=15% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHH------------------
Q 001390 803 VSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVD------------------ 864 (1088)
Q Consensus 803 q~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaE------------------ 864 (1088)
++....++..+.-.++++-+|+.=+.--+.|++.++.+=..--.|-++|-+|++.++++=+.
T Consensus 1068 eelr~eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaaka 1147 (1320)
T PLN03188 1068 EELRTELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARA 1147 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred ---------HHHHHHHHhhHHHHHHHhhhhhH---------------------HHHHHHHHHHHHHHhhhcCCCCcccch
Q 001390 865 ---------LNEACQKLSSLEVELEDKSNCCE---------------------ELEATCLELQLQLESVTKSGIPTDELK 914 (1088)
Q Consensus 865 ---------l~qlqeKVsSLE~ELE~er~~lE---------------------El~aKc~eLeeQLEr~e~~~~~~~~~~ 914 (1088)
++-+...+++|+.|-+++++++. ||..|+++.++-+.-.+.........+
T Consensus 1148 g~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~ 1227 (1320)
T PLN03188 1148 GVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEA 1227 (1320)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhh------hhhhHhHHHHHhhHHH
Q 001390 915 QDEKQ------IQTDWEIATASEKLAE 935 (1088)
Q Consensus 915 ~e~~~------~kqe~EIaaAAeKLAE 935 (1088)
..-++ -+.|-||.+-=.-|||
T Consensus 1228 ~~~~k~~~klkrkh~~e~~t~~q~~ae 1254 (1320)
T PLN03188 1228 AEAYKQIDKLKRKHENEISTLNQLVAE 1254 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
No 490
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=31.18 E-value=8.7e+02 Score=28.91 Aligned_cols=94 Identities=12% Similarity=0.067 Sum_probs=0.0
Q ss_pred hhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001390 789 INVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEA 868 (1088)
Q Consensus 789 EqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~ql 868 (1088)
+-+..-+.-+-.....+......+..+.+.++..+..+..|++.+-..+..+|.+|-..=-.+ ||+.++.+.+|
T Consensus 126 e~i~el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~v------LNeKK~KIR~l 199 (342)
T PF06632_consen 126 EVIRELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLV------LNEKKAKIREL 199 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhHHHHHHHH
Q ss_pred HHHHhhHHHHHHHhhhhhHH
Q 001390 869 CQKLSSLEVELEDKSNCCEE 888 (1088)
Q Consensus 869 qeKVsSLE~ELE~er~~lEE 888 (1088)
+..+..++..-...+...++
T Consensus 200 q~~L~~~~~~~~~~~~~~~~ 219 (342)
T PF06632_consen 200 QRLLASAKEEEKSPKQERED 219 (342)
T ss_dssp HHHHHHHHHHHHHHH-----
T ss_pred HHHHHHhhccccchhhhhcc
No 491
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=30.96 E-value=4.1e+02 Score=24.11 Aligned_cols=78 Identities=18% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhcCCCCcccchhhhhhhhhhHhHHHHHhhHHHHH
Q 001390 858 LKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTKSGIPTDELKQDEKQIQTDWEIATASEKLAECQ 937 (1088)
Q Consensus 858 L~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~~~~~~~~~~~e~~~~kqe~EIaaAAeKLAECQ 937 (1088)
|..+..++......+..+.. +.++..+.+++..+.+..+-|.+|+. +...-.-.+-...-.||..|+
T Consensus 1 f~~l~~~i~~~l~~~~~~~~--~~r~~~i~~~e~~l~ea~~~l~qMe~-----------E~~~~p~s~r~~~~~kl~~yr 67 (79)
T PF05008_consen 1 FQALTAEIKSKLERIKNLSG--EQRKSLIREIERDLDEAEELLKQMEL-----------EVRSLPPSERNQYKSKLRSYR 67 (79)
T ss_dssp HHHHHHHHHHHHHHGGGS-C--HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHCTS-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccCh--HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhCCHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHh
Q 001390 938 ETILNLGKQLK 948 (1088)
Q Consensus 938 ETI~~LGKQLK 948 (1088)
..+..|-++|+
T Consensus 68 ~~l~~lk~~l~ 78 (79)
T PF05008_consen 68 SELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
No 492
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=30.85 E-value=2.6e+02 Score=25.74 Aligned_cols=96 Identities=22% Similarity=0.324 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhhHHHHhhcCCChhhhhccCCCCCCCcccccCCCCCCCCCcchh
Q 001390 248 KQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPSKRI 327 (1088)
Q Consensus 248 KQhlEsvKKIakLEaECqRLr~l~rk~lpgpaa~a~mk~eve~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (1088)
....+....|.+++..+.+|+.+-.+.|-.|..=..++.|++.+..+ -.+.+
T Consensus 7 ~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~----------------------------i~~~~ 58 (103)
T PF00804_consen 7 DEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDE----------------------------IKQLF 58 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHH----------------------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHH----------------------------HHHHH
Q ss_pred hhHHHHHHHhHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhHH
Q 001390 328 NFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEV 372 (1088)
Q Consensus 328 ~~l~~rl~~~eeEnk~lke~L~~k~~ELq~sr~~~a~t~skL~~~ 372 (1088)
..+-.+|..|+..+. ..+......++.+.-++.|+.-..|+..+
T Consensus 59 ~~~~~~lk~l~~~~~-~~~~~~~~~~~~ri~~nq~~~L~~kf~~~ 102 (103)
T PF00804_consen 59 QKIKKRLKQLSKDNE-DSEGEEPSSNEVRIRKNQVQALSKKFQEV 102 (103)
T ss_dssp HHHHHHHHHHHHHHH-HHHCTT--SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh-hhcccCCCcHHHHHHHHHHHHHHHHHHHH
No 493
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=30.82 E-value=6.4e+02 Score=26.34 Aligned_cols=96 Identities=13% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 001390 803 VSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDK 882 (1088)
Q Consensus 803 q~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~e 882 (1088)
......|+.++..|..+...-.+...-...+.+++.....+.+.-...+......|...- +-.+..++.+...-|..+
T Consensus 32 ~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~--~~~~e~~i~~~~~~I~~L 109 (146)
T PF08702_consen 32 RDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMI--IYILETKIINQPSNIRVL 109 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHH--HHHHHHHHhhhHhHHHHH
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 001390 883 SNCCEELEATCLELQLQL 900 (1088)
Q Consensus 883 r~~lEEl~aKc~eLeeQL 900 (1088)
+.-++....++.+|+.-+
T Consensus 110 q~~~~~~~~ki~~Le~~i 127 (146)
T PF08702_consen 110 QNILRSNRQKIQRLEQDI 127 (146)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
No 494
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=30.81 E-value=1.8e+02 Score=27.94 Aligned_cols=50 Identities=28% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHH
Q 001390 88 EAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRI 137 (1088)
Q Consensus 88 EaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki 137 (1088)
+.|++++..+|+.+.--.-.||+|-.||.+.|+++...-|++|-+-.+..
T Consensus 25 ~~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~ 74 (83)
T PF03670_consen 25 EEEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQL 74 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
No 495
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=30.65 E-value=4.7e+02 Score=27.22 Aligned_cols=84 Identities=21% Similarity=0.185 Sum_probs=0.0
Q ss_pred hhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001390 193 QRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVR 272 (1088)
Q Consensus 193 e~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~r 272 (1088)
+...+..+++..+..+......+..+...|..++....--+....--++....+......-.++|.+|.-|-..||.=..
T Consensus 20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~ 99 (135)
T TIGR03495 20 RLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRWAD 99 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhc
Q ss_pred hcCC
Q 001390 273 KRLP 276 (1088)
Q Consensus 273 k~lp 276 (1088)
..||
T Consensus 100 t~LP 103 (135)
T TIGR03495 100 TPLP 103 (135)
T ss_pred CCCc
No 496
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=30.49 E-value=8.2e+02 Score=27.49 Aligned_cols=146 Identities=14% Similarity=0.184 Sum_probs=0.0
Q ss_pred HhHhhhHHHHHHHHhhcccchh------------HHHHhHHHHH------HHhhhhHHHHHHHHHHHHHHHHHHhhhhhH
Q 001390 47 NDVKNLNDKLFSALAECNAKDD------------LVKKHAKMAQ------EAITGREKAEAEVVSLKQELDAALQQRDTG 108 (1088)
Q Consensus 47 ~~~k~l~ekLs~a~~~~~~kd~------------lvkqh~kvae------eav~GweKaEaE~~slKkqLe~~~qq~v~l 108 (1088)
..++.-.|+++..+..+..+=. .+|+|.|..+ ++|-.|....+.+...|+.|+..-+.-..+
T Consensus 63 ~~~~~~~E~~a~~H~~l~~~L~~~~~~i~~~~~~~~k~~kk~~e~~~~~~~~~q~~q~~~~~l~kaK~~Y~~~cke~e~a 142 (261)
T cd07674 63 EVFRVSSDKLALCHLELMRKLNDLIKDINRYGDEQVKIHKKTKEEAIGTLEAVQSLQVQSQHLQKSRENYHSKCVEQERL 142 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H------HhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHhhhhhhhhhHHH-
Q 001390 109 E------ERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSK-RLAKLGVENTHLTKAL- 180 (1088)
Q Consensus 109 E------ErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k-~L~k~~aEn~~Ls~~l- 180 (1088)
. ..+.-+..++++|.+.. +...+...+....|+...+..=.++.+++. +|.-.+.-...+.+.+
T Consensus 143 ~~~~~s~k~leK~~~K~~ka~~~y--------~~~~~ky~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~lk~~L~~~~~~~~ 214 (261)
T cd07674 143 RREGVPQKELEKAELKTKKAAESL--------RGSVEKYNRARGDFEQKMLESAQKFQDIEETHLRHMKLLIKGYSHSVE 214 (261)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---HHHHHHHHHHHhhhhhHhhh
Q 001390 181 ---LAKEKLIEDLGKQRTQAEAD 200 (1088)
Q Consensus 181 ---~~~~~ii~eLkee~s~~eae 200 (1088)
...+.+.++++.....++.+
T Consensus 215 ~~~~~~~~~~e~~~~~l~~id~~ 237 (261)
T cd07674 215 DTHVQIGQVHEEFKQNVENVGVE 237 (261)
T ss_pred HccchHHHHHHHHHHHHHhCCHH
No 497
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=30.39 E-value=9.5e+02 Score=28.22 Aligned_cols=227 Identities=18% Similarity=0.296 Sum_probs=0.0
Q ss_pred hHHhhhhhchhHhhHhHhhhHHHHHHHHhhcccchhHHHHhHHHHHHHh---------hhhHHHHHHHHHHHHHHHHHHh
Q 001390 33 AEMQILLTDKAELENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAI---------TGREKAEAEVVSLKQELDAALQ 103 (1088)
Q Consensus 33 ~e~~~~~~~~~~~~~~~k~l~ekLs~a~~~~~~kd~lvkqh~kvaeeav---------~GweKaEaE~~slKkqLe~~~q 103 (1088)
++..+.-...++|...+|-=.|.|......++.-=+.++ ||-++ -.-|..|+|+.+..-.|.++.+
T Consensus 31 ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~-----aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~ 105 (305)
T PF14915_consen 31 EDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLK-----AENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQ 105 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH-----HHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001390 104 QRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAK 183 (1088)
Q Consensus 104 q~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~ 183 (1088)
.--.-.--=.+++-++..-.+.- .++++-+.-....+..--.-|-.+|..++..+..++.+-....-+|-+|
T Consensus 106 d~dqsq~skrdlelafqr~rdEw--------~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEK 177 (305)
T PF14915_consen 106 DHDQSQTSKRDLELAFQRARDEW--------VRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREK 177 (305)
T ss_pred hHHHHHhhHHHHHHHHHHHhhHH--------HHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHH
Q 001390 184 EKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESE 263 (1088)
Q Consensus 184 ~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaE 263 (1088)
.-+++.+...+.++...+.++......-+.+..---..-..++..|--+..|--+-+|.+|.|++.----.|.|.....-
T Consensus 178 tL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~ 257 (305)
T PF14915_consen 178 TLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQ 257 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q ss_pred HHHHHHHHH
Q 001390 264 CQRLRVLVR 272 (1088)
Q Consensus 264 CqRLr~l~r 272 (1088)
|+..=..+|
T Consensus 258 f~d~~~~L~ 266 (305)
T PF14915_consen 258 FQDIVKKLQ 266 (305)
T ss_pred HHHHHHHHH
No 498
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=30.19 E-value=4.4e+02 Score=31.21 Aligned_cols=81 Identities=16% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHH--------HHHHHHHHH
Q 001390 86 KAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEF--------EQSLMILEE 157 (1088)
Q Consensus 86 KaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~--------Ek~~~eLE~ 157 (1088)
..+.|...+.+++.+.+.....+..++..+......|...+ .+..+-...+.+..+.. .+...+|+.
T Consensus 1 e~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI-----~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~ 75 (330)
T PF07851_consen 1 ECEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSI-----SHQKKRLKELKKSLKRCKKSLSAEERELIEKLEE 75 (330)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhh
Q 001390 158 KLAETSKRLAKLGV 171 (1088)
Q Consensus 158 kL~El~k~L~k~~a 171 (1088)
++.+....+...++
T Consensus 76 ~Ik~r~~~l~DmEa 89 (330)
T PF07851_consen 76 DIKERRCQLFDMEA 89 (330)
T ss_pred HHHHHHhhHHHHHh
No 499
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=30.16 E-value=38 Score=33.68 Aligned_cols=87 Identities=21% Similarity=0.255 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHh
Q 001390 113 IHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGK 192 (1088)
Q Consensus 113 khLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLke 192 (1088)
+.|+.-|.+-..+| +...+.+...+.....|+....+-..+|..+...+.++......|.+.|.-
T Consensus 18 k~Leeiin~W~~eL-----e~q~k~F~~qA~~V~~wDr~Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~---------- 82 (116)
T PF05064_consen 18 KTLEEIINKWNKEL-----EEQEKEFNEQATQVNAWDRQLVENGEKISKLYSEVQKAESEQKRLDQELDF---------- 82 (116)
T ss_dssp ------------------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred CcHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q ss_pred hhhhHhhhHHHHHhhcchHHHHHHHh
Q 001390 193 QRTQAEADSNALMVRLDSTEKENASL 218 (1088)
Q Consensus 193 e~s~~eaei~~Lq~rLE~~EKEn~sL 218 (1088)
++..-.+|..-|+++|++...+
T Consensus 83 ----ie~qQ~eLe~~L~~lE~~~~~l 104 (116)
T PF05064_consen 83 ----IEAQQKELEELLDPLEKQVEKL 104 (116)
T ss_dssp ----HHHHHHCHHHHHCCCCCTT---
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHH
No 500
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=30.06 E-value=4.3e+02 Score=33.27 Aligned_cols=92 Identities=17% Similarity=0.212 Sum_probs=0.0
Q ss_pred hHhhHhHhhhHHHHHHHHhhcccchhHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHH
Q 001390 43 AELENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKEC 122 (1088)
Q Consensus 43 ~~~~~~~k~l~ekLs~a~~~~~~kd~lvkqh~kvaeeav~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKec 122 (1088)
++++..++..-++..++..++..|++ +.++++++++....++.--..+......++++
T Consensus 167 ~~~~~~~k~~~~~w~~~~~~Lp~~~~----------------------~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~l 224 (555)
T TIGR03545 167 EEIEKSLKAMQQKWKKRKKDLPNKQD----------------------LEEYKKRLEAIKKKDIKNPLELQKIKEEFDKL 224 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchh----------------------HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001390 123 MDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSK 164 (1088)
Q Consensus 123 mkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k 164 (1088)
.+++ +...+.+..-..++...+..++.++.++.+
T Consensus 225 k~e~--------~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ 258 (555)
T TIGR03545 225 KKEG--------KADKQKIKSAKNDLQNDKKQLKADLAELKK 258 (555)
T ss_pred HHHH--------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Done!