Query 001390
Match_columns 1088
No_of_seqs 167 out of 177
Neff 4.6
Searched_HMMs 29240
Date Tue Mar 26 01:37:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001390.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001390hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 98.2 0.0079 2.7E-07 61.4 37.4 32 335-366 240-271 (284)
2 1c1g_A Tropomyosin; contractIl 98.2 0.0082 2.8E-07 61.3 38.0 50 329-378 227-276 (284)
3 1i84_S Smooth muscle myosin he 97.8 3.8E-05 1.3E-09 98.2 11.3 142 88-229 856-999 (1184)
4 1i84_S Smooth muscle myosin he 97.7 3.8E-05 1.3E-09 98.2 9.0 9 4-12 834-842 (1184)
5 3vkg_A Dynein heavy chain, cyt 96.8 0.079 2.7E-06 73.8 24.4 185 88-281 1912-2109(3245)
6 3o0z_A RHO-associated protein 96.4 0.32 1.1E-05 49.7 20.0 141 43-230 9-153 (168)
7 2v71_A Nuclear distribution pr 96.4 0.63 2.2E-05 48.5 22.5 110 154-266 46-155 (189)
8 2v71_A Nuclear distribution pr 96.3 0.34 1.2E-05 50.5 19.9 92 187-292 90-181 (189)
9 3na7_A HP0958; flagellar bioge 96.2 0.51 1.8E-05 50.6 22.2 24 254-277 152-175 (256)
10 2dfs_A Myosin-5A; myosin-V, in 96.2 0.15 5E-06 65.2 20.1 117 146-272 917-1040(1080)
11 3na7_A HP0958; flagellar bioge 96.0 0.31 1.1E-05 52.3 19.1 78 84-164 41-118 (256)
12 2fxo_A Myosin heavy chain, car 95.6 0.35 1.2E-05 47.2 15.9 43 860-902 80-122 (129)
13 3u1c_A Tropomyosin alpha-1 cha 95.6 0.15 5E-06 48.0 12.6 92 785-876 8-99 (101)
14 2fxo_A Myosin heavy chain, car 95.4 0.79 2.7E-05 44.7 17.5 100 805-904 18-117 (129)
15 2dfs_A Myosin-5A; myosin-V, in 95.4 0.24 8.3E-06 63.2 17.5 25 203-227 1020-1044(1080)
16 3o0z_A RHO-associated protein 95.0 1.7 5.9E-05 44.4 18.9 92 145-243 57-148 (168)
17 3vkg_A Dynein heavy chain, cyt 94.9 1.1 3.7E-05 63.0 22.8 78 82-162 1924-2006(3245)
18 3u59_A Tropomyosin beta chain; 94.8 0.29 9.9E-06 45.9 12.1 90 786-875 9-98 (101)
19 2efr_A General control protein 94.4 1.9 6.4E-05 43.7 17.4 90 798-887 26-122 (155)
20 2efr_A General control protein 94.2 1.7 5.6E-05 44.1 16.6 113 819-950 26-138 (155)
21 3oja_B Anopheles plasmodium-re 94.0 0.6 2E-05 54.7 15.1 117 789-905 452-579 (597)
22 3oja_B Anopheles plasmodium-re 93.8 0.32 1.1E-05 57.0 12.4 28 820-847 462-489 (597)
23 3u1c_A Tropomyosin alpha-1 cha 93.4 1.9 6.5E-05 40.5 14.4 87 789-875 5-91 (101)
24 3ol1_A Vimentin; structural ge 93.2 1.1 3.7E-05 43.3 12.8 100 791-900 18-117 (119)
25 3u59_A Tropomyosin beta chain; 92.2 3.4 0.00012 38.6 14.4 87 789-875 5-91 (101)
26 3tnu_B Keratin, type II cytosk 92.2 0.97 3.3E-05 43.9 11.1 83 788-887 17-99 (129)
27 2b9c_A Striated-muscle alpha t 91.9 1.1 3.7E-05 44.9 11.2 100 799-905 16-115 (147)
28 1go4_E MAD1 (mitotic arrest de 91.8 0.17 5.7E-06 47.9 4.9 73 199-274 12-94 (100)
29 3tnu_A Keratin, type I cytoske 91.7 0.9 3.1E-05 44.3 10.2 83 788-887 19-101 (131)
30 1ic2_A Tropomyosin alpha chain 90.8 1.9 6.5E-05 38.8 10.7 60 793-852 6-65 (81)
31 3ol1_A Vimentin; structural ge 90.5 3.3 0.00011 39.9 12.8 84 821-904 20-103 (119)
32 3mq9_A Bone marrow stromal ant 90.3 2.7 9.2E-05 48.1 14.1 97 115-230 371-467 (471)
33 2ocy_A RAB guanine nucleotide 90.2 9 0.00031 38.8 15.9 92 51-168 3-97 (154)
34 2ocy_A RAB guanine nucleotide 89.3 8.7 0.0003 38.9 15.0 97 808-904 45-149 (154)
35 1ic2_A Tropomyosin alpha chain 89.0 2.6 8.9E-05 37.9 10.0 70 785-854 5-74 (81)
36 3q8t_A Beclin-1; autophagy, AT 88.8 7.6 0.00026 36.2 13.3 80 810-889 14-93 (96)
37 2v66_B Nuclear distribution pr 88.7 12 0.0004 36.1 14.7 98 788-885 5-106 (111)
38 3swk_A Vimentin; cytoskeleton, 87.2 3.8 0.00013 37.5 10.1 19 867-885 67-85 (86)
39 1deq_A Fibrinogen (alpha chain 87.2 6.4 0.00022 44.8 13.8 97 790-887 64-165 (390)
40 3ghg_A Fibrinogen alpha chain; 86.5 5.5 0.00019 46.9 13.1 29 853-881 114-142 (562)
41 2b9c_A Striated-muscle alpha t 86.4 9 0.00031 38.3 13.1 96 785-880 9-111 (147)
42 3hnw_A Uncharacterized protein 86.3 5.1 0.00017 39.7 11.1 18 861-878 115-132 (138)
43 3oja_A Leucine-rich immune mol 85.5 6.3 0.00022 45.2 13.2 33 788-820 355-387 (487)
44 3ghg_A Fibrinogen alpha chain; 85.2 4 0.00014 48.0 11.2 30 856-885 131-160 (562)
45 3hnw_A Uncharacterized protein 85.2 7 0.00024 38.7 11.5 37 865-901 98-134 (138)
46 3tnu_B Keratin, type II cytosk 85.2 13 0.00045 36.0 13.3 44 786-829 29-72 (129)
47 3swk_A Vimentin; cytoskeleton, 84.6 5.5 0.00019 36.4 9.7 79 823-901 2-80 (86)
48 3tnu_A Keratin, type I cytoske 84.5 11 0.00039 36.6 12.6 89 786-881 31-123 (131)
49 2eqb_B RAB guanine nucleotide 84.4 22 0.00077 33.4 13.8 17 864-880 77-93 (97)
50 1l8d_A DNA double-strand break 83.9 13 0.00045 34.6 12.4 29 801-829 11-39 (112)
51 1x79_B RAB GTPase binding effe 82.7 16 0.00054 35.2 12.3 100 82-220 6-105 (112)
52 3oja_A Leucine-rich immune mol 82.1 13 0.00046 42.5 14.0 40 785-824 359-398 (487)
53 2e7s_A RAB guanine nucleotide 81.6 4.3 0.00015 40.2 8.2 114 785-898 7-131 (135)
54 1m1j_B Fibrinogen beta chain; 81.3 16 0.00056 42.7 14.3 53 799-851 99-151 (464)
55 2v4h_A NF-kappa-B essential mo 81.1 16 0.00055 35.0 11.6 30 873-902 72-101 (110)
56 3a7p_A Autophagy protein 16; c 81.1 11 0.00037 38.1 11.0 62 820-881 67-128 (152)
57 2jee_A YIIU; FTSZ, septum, coi 80.2 16 0.00054 33.4 10.7 53 823-875 22-74 (81)
58 2v4h_A NF-kappa-B essential mo 79.3 20 0.0007 34.3 11.7 34 794-827 25-58 (110)
59 3jsv_C NF-kappa-B essential mo 79.2 15 0.0005 34.4 10.4 77 825-905 6-82 (94)
60 3q8t_A Beclin-1; autophagy, AT 78.6 43 0.0015 31.2 14.2 17 887-903 77-93 (96)
61 1l8d_A DNA double-strand break 77.7 20 0.0007 33.3 11.3 37 804-840 7-43 (112)
62 2oto_A M protein; helical coil 77.5 59 0.002 32.2 16.6 51 791-841 27-77 (155)
63 3s4r_A Vimentin; alpha-helix, 76.9 32 0.0011 31.9 12.1 33 795-827 11-43 (93)
64 3bas_A Myosin heavy chain, str 76.8 35 0.0012 31.2 12.2 11 890-900 76-86 (89)
65 1x79_B RAB GTPase binding effe 76.3 29 0.00099 33.4 11.9 83 146-242 6-88 (112)
66 4gkw_A Spindle assembly abnorm 75.8 65 0.0022 31.8 16.8 116 786-901 11-129 (167)
67 2e7s_A RAB guanine nucleotide 75.2 7.5 0.00026 38.6 7.7 86 112-222 41-133 (135)
68 3a7o_A Autophagy protein 16; c 74.5 14 0.00049 32.8 8.4 57 822-878 19-75 (75)
69 3a7p_A Autophagy protein 16; c 73.9 11 0.00037 38.1 8.6 54 166-219 77-130 (152)
70 1deq_A Fibrinogen (alpha chain 73.6 29 0.00098 39.6 12.8 96 796-901 63-158 (390)
71 4h22_A Leucine-rich repeat fli 72.1 30 0.001 32.9 10.6 79 196-274 6-84 (103)
72 3mq9_A Bone marrow stromal ant 71.1 62 0.0021 36.8 15.4 72 821-895 397-468 (471)
73 4h22_A Leucine-rich repeat fli 71.1 28 0.00094 33.1 10.1 79 808-886 10-88 (103)
74 2zqm_A Prefoldin beta subunit 69.3 47 0.0016 30.8 11.6 31 872-902 79-109 (117)
75 1f5n_A Interferon-induced guan 68.2 65 0.0022 38.7 15.2 59 98-161 461-519 (592)
76 2xzr_A Immunoglobulin-binding 67.8 82 0.0028 29.6 14.8 99 785-904 5-103 (114)
77 2eqb_B RAB guanine nucleotide 67.6 83 0.0029 29.6 13.8 55 805-859 10-64 (97)
78 2zqm_A Prefoldin beta subunit 66.2 83 0.0028 29.1 12.6 44 853-896 67-110 (117)
79 1fxk_A Prefoldin; archaeal pro 65.9 59 0.002 29.7 11.4 25 861-885 70-94 (107)
80 3cvf_A Homer-3, homer protein 65.8 37 0.0013 30.8 9.5 9 862-870 47-55 (79)
81 1wt6_A Myotonin-protein kinase 65.5 25 0.00086 32.1 8.3 44 189-232 28-71 (81)
82 3jsv_C NF-kappa-B essential mo 65.5 45 0.0015 31.2 10.2 81 809-889 4-87 (94)
83 1gk4_A Vimentin; intermediate 65.2 68 0.0023 28.9 11.3 20 788-807 3-22 (84)
84 1x8y_A Lamin A/C; structural p 63.9 52 0.0018 29.9 10.3 21 787-807 4-24 (86)
85 1m1j_A Fibrinogen alpha subuni 63.7 79 0.0027 36.9 13.9 120 785-905 56-191 (491)
86 2v66_B Nuclear distribution pr 62.2 1.1E+02 0.0039 29.3 15.5 74 196-269 32-105 (111)
87 3i00_A HIP-I, huntingtin-inter 61.1 26 0.00089 34.0 8.2 29 242-270 86-114 (120)
88 3qh9_A Liprin-beta-2; coiled-c 59.8 67 0.0023 29.3 9.9 59 815-873 20-78 (81)
89 3cve_A Homer protein homolog 1 59.1 89 0.003 28.0 10.5 52 830-881 9-60 (72)
90 3mq7_A Bone marrow stromal ant 58.9 1.4E+02 0.0046 29.1 13.2 20 826-845 30-49 (121)
91 2oto_A M protein; helical coil 58.3 1.5E+02 0.0051 29.3 16.4 16 826-841 55-70 (155)
92 4gkw_A Spindle assembly abnorm 57.2 1.5E+02 0.0053 29.2 16.6 62 111-177 12-73 (167)
93 3ghg_C Fibrinogen gamma chain; 56.9 38 0.0013 39.1 10.0 65 63-146 23-87 (411)
94 3cvf_A Homer-3, homer protein 56.7 61 0.0021 29.5 9.2 35 814-848 20-54 (79)
95 2xnx_M M protein, M1-BC1; cell 54.5 70 0.0024 32.1 10.0 66 863-932 66-132 (146)
96 1m1j_C Fibrinogen gamma chain; 54.5 1E+02 0.0036 35.5 13.1 35 871-905 99-133 (409)
97 1m1j_C Fibrinogen gamma chain; 54.1 1.7E+02 0.0059 33.7 14.8 29 872-900 107-135 (409)
98 3iox_A AGI/II, PA; alpha helix 51.4 1.8E+02 0.0062 34.3 14.4 68 824-905 44-111 (497)
99 1go4_E MAD1 (mitotic arrest de 50.7 70 0.0024 30.3 8.9 33 814-846 12-44 (100)
100 3mov_A Lamin-B1; LMNB1, B-type 50.5 86 0.0029 29.2 9.5 24 786-809 12-35 (95)
101 1fxk_C Protein (prefoldin); ar 49.9 1.8E+02 0.006 27.7 13.6 44 854-897 86-129 (133)
102 2i1j_A Moesin; FERM, coiled-co 48.7 29 0.001 41.5 7.7 118 787-904 301-425 (575)
103 2i1j_A Moesin; FERM, coiled-co 48.0 13 0.00045 44.4 4.6 67 785-851 327-393 (575)
104 1fxk_A Prefoldin; archaeal pro 47.6 1.6E+02 0.0056 26.7 12.4 36 866-901 68-103 (107)
105 4dzn_A Coiled-coil peptide CC- 47.5 19 0.00066 26.8 3.6 27 200-226 3-29 (33)
106 3iv1_A Tumor susceptibility ge 47.1 80 0.0027 28.7 8.4 21 150-170 11-31 (78)
107 2no2_A HIP-I, huntingtin-inter 46.5 2E+02 0.0067 27.3 13.7 77 145-232 24-101 (107)
108 3iox_A AGI/II, PA; alpha helix 46.4 3.6E+02 0.012 31.9 15.8 25 152-176 4-28 (497)
109 1x8y_A Lamin A/C; structural p 45.9 92 0.0032 28.2 8.8 14 867-880 60-73 (86)
110 3s4r_A Vimentin; alpha-helix, 45.6 1.8E+02 0.0063 26.7 12.0 34 802-835 11-44 (93)
111 1m1j_A Fibrinogen alpha subuni 45.6 2.1E+02 0.0072 33.5 13.5 72 820-901 85-156 (491)
112 3i00_A HIP-I, huntingtin-inter 44.5 1E+02 0.0035 29.9 9.3 19 787-805 16-34 (120)
113 3trt_A Vimentin; cytoskeleton, 43.8 1.4E+02 0.0048 26.0 9.5 17 863-879 56-72 (77)
114 3ghg_B Fibrinogen beta chain; 43.8 1.5E+02 0.0051 34.8 12.1 44 797-840 92-135 (461)
115 2w83_C C-JUN-amino-terminal ki 43.7 1E+02 0.0034 27.9 8.3 48 855-902 29-76 (77)
116 3uul_A Utrophin; spectrin repe 42.9 1.9E+02 0.0063 26.0 14.0 25 801-825 3-27 (118)
117 3ghg_B Fibrinogen beta chain; 42.8 1.4E+02 0.0048 35.0 11.7 57 791-847 93-153 (461)
118 3onj_A T-snare VTI1; helix, HA 42.5 88 0.003 28.9 8.3 89 851-952 3-94 (97)
119 4emc_A Monopolin complex subun 40.5 1.1E+02 0.0037 32.0 9.2 10 823-832 43-52 (190)
120 1gu4_A CAAT/enhancer binding p 40.2 55 0.0019 29.5 6.3 34 200-233 37-70 (78)
121 1hjb_A Ccaat/enhancer binding 39.9 57 0.002 30.0 6.4 28 202-229 39-66 (87)
122 3tul_A Cell invasion protein S 39.1 83 0.0028 31.7 7.8 100 201-300 22-121 (158)
123 3u0c_A Invasin IPAB, 62 kDa an 39.0 2.2E+02 0.0074 29.3 10.9 69 807-875 75-143 (201)
124 3nmd_A CGMP dependent protein 38.7 60 0.002 29.1 6.1 25 863-887 33-57 (72)
125 1ik9_A DNA repair protein XRCC 37.8 3.5E+02 0.012 28.4 12.9 41 804-844 136-176 (213)
126 4emc_A Monopolin complex subun 37.3 1.4E+02 0.0047 31.2 9.4 44 801-844 14-57 (190)
127 2oqq_A Transcription factor HY 36.8 66 0.0023 26.0 5.4 34 146-179 6-39 (42)
128 3efg_A Protein SLYX homolog; x 36.6 74 0.0025 28.6 6.5 40 814-853 21-60 (78)
129 2zdi_C Prefoldin subunit alpha 36.6 57 0.002 32.1 6.4 48 854-901 96-143 (151)
130 3ghg_C Fibrinogen gamma chain; 35.8 1E+02 0.0035 35.7 9.1 34 798-831 36-69 (411)
131 4fla_A Regulation of nuclear P 35.6 2.7E+02 0.0092 27.9 11.1 26 785-810 67-92 (152)
132 2yy0_A C-MYC-binding protein; 35.3 40 0.0014 28.3 4.3 31 872-902 21-51 (53)
133 4etp_A Kinesin-like protein KA 34.8 72 0.0025 36.5 7.7 32 816-847 5-36 (403)
134 3ni0_A Bone marrow stromal ant 34.8 2E+02 0.0068 27.0 9.1 67 153-226 21-87 (99)
135 3qh9_A Liprin-beta-2; coiled-c 34.7 1.3E+02 0.0044 27.5 7.7 16 791-806 31-46 (81)
136 3efg_A Protein SLYX homolog; x 34.6 1.1E+02 0.0038 27.5 7.3 47 791-837 12-58 (78)
137 2lw1_A ABC transporter ATP-bin 34.4 1.2E+02 0.0042 27.4 7.8 25 785-809 21-45 (89)
138 2xdj_A Uncharacterized protein 34.2 2.7E+02 0.0091 25.4 9.8 28 819-846 25-52 (83)
139 4dk0_A Putative MACA; alpha-ha 33.9 1.3E+02 0.0045 32.7 9.5 22 883-904 135-156 (369)
140 3uun_A Dystrophin; triple heli 33.8 2.6E+02 0.0087 24.9 14.3 23 802-824 4-26 (119)
141 3c9i_A Tail needle protein GP2 33.7 4.5E+02 0.015 27.8 12.5 73 830-902 79-151 (242)
142 3hhm_B NISH2 P85alpha; PI3KCA, 33.3 3.6E+02 0.012 30.6 13.0 78 828-905 161-254 (373)
143 2ke4_A CDC42-interacting prote 33.1 2.6E+02 0.0088 26.1 9.8 31 862-892 61-91 (98)
144 4etp_A Kinesin-like protein KA 32.8 91 0.0031 35.6 8.2 7 957-963 110-116 (403)
145 2zdi_C Prefoldin subunit alpha 32.8 1.3E+02 0.0045 29.4 8.3 38 867-904 102-139 (151)
146 1ci6_A Transcription factor AT 32.7 56 0.0019 28.1 4.9 34 200-233 24-57 (63)
147 1fxk_C Protein (prefoldin); ar 32.4 3.3E+02 0.011 25.8 11.8 39 865-903 90-128 (133)
148 2xdj_A Uncharacterized protein 31.9 2.2E+02 0.0077 25.8 8.9 30 812-841 25-54 (83)
149 2k48_A Nucleoprotein; viral pr 31.7 2.2E+02 0.0077 27.1 9.0 34 812-845 33-66 (107)
150 1g6u_A Domain swapped dimer; d 31.2 76 0.0026 25.4 4.9 26 200-225 21-46 (48)
151 2l5g_B Putative uncharacterize 30.7 75 0.0026 25.7 4.8 32 867-898 6-37 (42)
152 3swf_A CGMP-gated cation chann 29.9 1.7E+02 0.0058 26.3 7.5 49 107-170 4-52 (74)
153 3fpp_A Macrolide-specific effl 29.2 1.8E+02 0.0061 31.3 9.4 12 890-901 134-145 (341)
154 1d7m_A Cortexillin I; coiled-c 29.0 3.6E+02 0.012 25.1 14.1 17 921-937 78-94 (101)
155 3uun_A Dystrophin; triple heli 29.0 3.1E+02 0.011 24.4 13.8 22 788-809 4-25 (119)
156 1t2k_D Cyclic-AMP-dependent tr 28.9 72 0.0024 27.0 4.9 35 200-234 23-57 (61)
157 3m0d_C TNF receptor-associated 28.8 2.8E+02 0.0096 23.8 8.8 55 216-270 9-63 (65)
158 3uux_B Mitochondrial division 28.4 1.8E+02 0.0062 31.4 8.8 51 785-835 155-205 (242)
159 3swy_A Cyclic nucleotide-gated 28.3 1.8E+02 0.0063 23.9 6.9 44 107-165 2-45 (46)
160 2c5k_T Syntaxin TLG1, T-snare 27.8 1.3E+02 0.0044 27.9 6.8 27 875-901 66-92 (95)
161 2no2_A HIP-I, huntingtin-inter 27.6 4E+02 0.014 25.2 15.4 23 810-832 18-40 (107)
162 1d7m_A Cortexillin I; coiled-c 27.3 3.8E+02 0.013 24.9 14.7 91 117-226 4-94 (101)
163 3hhm_B NISH2 P85alpha; PI3KCA, 26.9 7.3E+02 0.025 28.1 16.3 8 1050-1057 346-353 (373)
164 2wt7_B Transcription factor MA 26.5 3.7E+02 0.013 24.9 9.5 69 785-854 20-88 (90)
165 3edu_A Beta-I spectrin, spectr 26.4 5E+02 0.017 26.0 16.0 150 688-896 1-173 (218)
166 4dk0_A Putative MACA; alpha-ha 26.2 2.5E+02 0.0086 30.4 10.0 24 882-905 127-150 (369)
167 2qyw_A Vesicle transport throu 26.1 3.1E+02 0.011 25.4 9.2 90 846-948 12-102 (102)
168 3plt_A Sphingolipid long chain 25.9 6.4E+02 0.022 27.1 19.0 25 667-691 19-43 (234)
169 2wt7_A Proto-oncogene protein 25.9 87 0.003 26.8 4.9 35 200-234 24-58 (63)
170 3l4q_C Phosphatidylinositol 3- 25.5 5.6E+02 0.019 26.2 13.0 90 786-875 38-150 (170)
171 2ke4_A CDC42-interacting prote 25.1 1.9E+02 0.0066 27.0 7.5 64 109-177 14-82 (98)
172 3htk_B Structural maintenance 25.0 3.4E+02 0.012 23.6 9.1 58 827-884 10-67 (73)
173 3haj_A Human pacsin2 F-BAR; pa 24.7 4.1E+02 0.014 30.7 11.9 111 786-899 129-239 (486)
174 3trt_A Vimentin; cytoskeleton, 24.6 3.4E+02 0.012 23.5 9.3 20 883-902 55-74 (77)
175 2xnx_M M protein, M1-BC1; cell 24.6 2.2E+02 0.0076 28.6 8.1 62 820-881 32-105 (146)
176 3uux_B Mitochondrial division 24.6 2.1E+02 0.0071 30.9 8.4 53 789-841 152-204 (242)
177 1wle_A Seryl-tRNA synthetase; 23.9 3.8E+02 0.013 31.6 11.4 33 807-839 70-102 (501)
178 3u06_A Protein claret segregat 23.3 1.5E+02 0.005 34.1 7.7 10 956-965 107-116 (412)
179 2q6q_A Spindle POLE BODY compo 23.0 3.8E+02 0.013 23.8 8.2 64 815-885 4-67 (74)
180 2pms_C Pneumococcal surface pr 22.6 2.6E+02 0.009 27.4 8.0 26 880-905 64-89 (125)
181 4e61_A Protein BIM1; EB1-like 22.4 5.1E+02 0.018 24.7 10.4 32 808-839 12-43 (106)
182 3mov_A Lamin-B1; LMNB1, B-type 22.1 2.3E+02 0.0078 26.3 7.3 17 825-841 16-32 (95)
183 3fpp_A Macrolide-specific effl 22.0 1.2E+02 0.004 32.8 6.2 23 882-904 133-155 (341)
184 1cii_A Colicin IA; bacteriocin 21.9 1E+03 0.035 28.1 16.5 121 132-266 338-458 (602)
185 2pms_C Pneumococcal surface pr 21.8 5.6E+02 0.019 25.1 10.2 21 209-229 99-119 (125)
186 3m91_A Proteasome-associated A 21.6 1.9E+02 0.0065 24.2 5.9 27 156-182 8-34 (51)
187 3ni0_A Bone marrow stromal ant 21.3 5.2E+02 0.018 24.3 10.4 44 861-904 37-80 (99)
188 3m91_A Proteasome-associated A 21.3 2.6E+02 0.0089 23.4 6.7 25 823-847 11-35 (51)
189 3he5_B Synzip2; heterodimeric 21.0 1.9E+02 0.0065 23.5 5.5 21 181-201 27-47 (52)
190 1ci6_A Transcription factor AT 20.8 2E+02 0.0069 24.6 6.2 27 817-843 26-52 (63)
191 3ljm_A Coil Ser L9C; de novo d 20.5 1.1E+02 0.0038 22.6 3.7 24 209-232 4-27 (31)
192 3m9b_A Proteasome-associated A 20.1 75 0.0026 34.5 4.1 31 875-905 66-96 (251)
193 4ad8_A DNA repair protein RECN 20.1 9.3E+02 0.032 27.6 13.7 150 187-368 188-345 (517)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.20 E-value=0.0079 Score=61.41 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=11.4
Q ss_pred HHhHHHHHHHHHHHhhhhhhhhHHHHHHHHhh
Q 001390 335 RAMEEENNSLKEVLDKKTNELQFSRTMYARAA 366 (1088)
Q Consensus 335 ~~~eeEnk~lke~L~~k~~ELq~sr~~~a~t~ 366 (1088)
..++.+...+...+..-..++...+.-+++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (284)
T 1c1g_A 240 EFAERSVTKLEKSIDDLEDELYAQKLKYKAIS 271 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.19 E-value=0.0082 Score=61.29 Aligned_cols=50 Identities=10% Similarity=0.169 Sum_probs=29.8
Q ss_pred hHHHHHHHhHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhHHHHHHHH
Q 001390 329 FLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQIEE 378 (1088)
Q Consensus 329 ~l~~rl~~~eeEnk~lke~L~~k~~ELq~sr~~~a~t~skL~~~e~q~~~ 378 (1088)
.+..++..++.+...+...+..-..++...+.-+...-.++..++.++..
T Consensus 227 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (284)
T 1c1g_A 227 VLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDH 276 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666666555555555655555553
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.85 E-value=3.8e-05 Score=98.23 Aligned_cols=142 Identities=15% Similarity=0.217 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHH--HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001390 88 EAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQ--EQRIHDAVMKASMEFEQSLMILEEKLAETSKR 165 (1088)
Q Consensus 88 EaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEq--Eqki~da~~kks~E~Ek~~~eLE~kL~El~k~ 165 (1088)
+.|+..++.+++....+...+++.+..+...+..+.+++..++.+- ++.....+......+.....+++.++.+++.+
T Consensus 856 ~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~e 935 (1184)
T 1i84_S 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEAR 935 (1184)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555554444433222 12222223333455555555666666666666
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHH
Q 001390 166 LAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKEL 229 (1088)
Q Consensus 166 L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkEL 229 (1088)
+...+.+...|...+..-+.-+..++.+....+..+..++.++..++.++..++.++..+..++
T Consensus 936 lee~ee~l~el~~e~~~le~el~~L~~eleele~~l~~l~~e~~~le~~l~~l~~el~~lee~l 999 (1184)
T 1i84_S 936 IEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQN 999 (1184)
T ss_dssp HHHHHHC---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555444432222222223333333333333333333333333333333333333333333
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.75 E-value=3.8e-05 Score=98.25 Aligned_cols=9 Identities=22% Similarity=0.660 Sum_probs=6.3
Q ss_pred CCCCCcccc
Q 001390 4 HKPWLWRKK 12 (1088)
Q Consensus 4 ~~~w~w~kk 12 (1088)
+|.|+|.+-
T Consensus 834 ~k~~~~~rl 842 (1184)
T 1i84_S 834 VXHWPWMXL 842 (1184)
T ss_dssp HTTCHHHHH
T ss_pred HhhhHHHHH
Confidence 467888764
No 5
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.76 E-value=0.079 Score=73.78 Aligned_cols=185 Identities=18% Similarity=0.184 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHH
Q 001390 88 EAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQS-------LMILEEKLA 160 (1088)
Q Consensus 88 EaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~-------~~eLE~kL~ 160 (1088)
..|+...+..|..-..|.....+.|..|...|.+...+|....++-++.+...... ..+-++. +.+++.+-+
T Consensus 1912 ~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~-~~~ae~~k~~v~~~~~~~~~~~~ 1990 (3245)
T 3vkg_A 1912 RDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQD-QQAAEIKQKDARELQVQLDVRNK 1990 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666666666666666666666644444444333322221 2222222 222222222
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhH
Q 001390 161 ETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNR 240 (1088)
Q Consensus 161 El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ 240 (1088)
+++..-+..+++ |..|+=+ .=++++.+.+++++...+++|+..+.+++.+...|..++.+.+-...|++.-.
T Consensus 1991 ei~~~k~~~e~d---L~~A~Pa-----~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~ 2062 (3245)
T 3vkg_A 1991 EIAVQKVKAYAD---LEKAEPT-----GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIK 2062 (3245)
T ss_dssp HHHHHHHHHHHC---C------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HhhcCCC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222223333 4433221 34555666777777777788888888888888888888888888888888888
Q ss_pred HhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------hcCCChHHH
Q 001390 241 RTADESHKQHLESVKKIAKLESECQRLRVLVR------KRLPGPAAL 281 (1088)
Q Consensus 241 ksaEaA~KQhlEsvKKIakLEaECqRLr~l~r------k~lpgpaa~ 281 (1088)
..++...++...+.+-|..|..|-.||...+. ++|||-.-|
T Consensus 2063 ~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD~LL 2109 (3245)
T 3vkg_A 2063 TESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDVVL 2109 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHHHHH
Confidence 88888888899999999999999999986543 678886444
No 6
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.37 E-value=0.32 Score=49.69 Aligned_cols=141 Identities=16% Similarity=0.179 Sum_probs=88.7
Q ss_pred hHhhHhHhhhHHHHHHHHhhcccchhHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHH
Q 001390 43 AELENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKEC 122 (1088)
Q Consensus 43 ~~~~~~~k~l~ekLs~a~~~~~~kd~lvkqh~kvaeeav~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKec 122 (1088)
..|++.+..+|+||-+- -|++.-|-|..+|+..-. ..++.....|++++..|....-.+
T Consensus 9 ~~LekQL~E~n~kLk~E------------------sE~~~rlkK~~tEl~k~~---~~~E~~~rELq~~~~~L~~~k~~L 67 (168)
T 3o0z_A 9 SQLQKQLEEANDLLRTE------------------SDTAVRLRKSHTEMSKSI---SQLESLNRELQERNRILENSKSQT 67 (168)
T ss_dssp -CTHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh------------------HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34888999999998542 356677777777766444 444555667888888888888888
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHH
Q 001390 123 MDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSN 202 (1088)
Q Consensus 123 mkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~ 202 (1088)
.+++-.++-.=++ -......-.....+|+.++..|..+|...+. ....+..+..
T Consensus 68 eke~~~LQa~L~q-----Er~~r~q~se~~~elq~ri~~L~~El~~~k~---------------------~~~k~~~e~r 121 (168)
T 3o0z_A 68 DKDYYQLQAILEA-----ERRDRGHDSEMIGDLQARITSLQEEVKHLKH---------------------NLEKVEGERK 121 (168)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHH
Confidence 7777433322111 1111222334445666666666555444332 3344556667
Q ss_pred HHHhhcchHHHHHHHhh----HHHHHHHHHHH
Q 001390 203 ALMVRLDSTEKENASLK----YEVRVLGKELE 230 (1088)
Q Consensus 203 ~Lq~rLE~~EKEn~sLK----yEl~vlqkELE 230 (1088)
.|+-++-.+||+.+++. |+|..++.-++
T Consensus 122 ~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~e 153 (168)
T 3o0z_A 122 EAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLE 153 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 77888888888888888 87887777654
No 7
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.36 E-value=0.63 Score=48.47 Aligned_cols=110 Identities=23% Similarity=0.222 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHH
Q 001390 154 ILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRN 233 (1088)
Q Consensus 154 eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~ 233 (1088)
+||..|..+++++..+...+..|. .+.+.....+......+...+..|+..+..+...+..|+..|+-++..-+-+.
T Consensus 46 ELE~eL~~~Ek~~~~L~~~~~~L~---~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlE 122 (189)
T 2v71_A 46 ELEAQLVQAEQRNRDLQADNQRLK---YEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLE 122 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 444444444444444444433333 12222222333333333334555555555555555555555444444433333
Q ss_pred HHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHH
Q 001390 234 EEREFNRRTADESHKQHLESVKKIAKLESECQR 266 (1088)
Q Consensus 234 eEre~s~ksaEaA~KQhlEsvKKIakLEaECqR 266 (1088)
...-...-+++.....+-..+.+++-||.|+..
T Consensus 123 r~~R~~~~SleD~e~kln~aiEr~alLE~El~E 155 (189)
T 2v71_A 123 RAKRATIMSLEDFEQRLNQAIERNAFLESELDE 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444555555556666666666554
No 8
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.26 E-value=0.34 Score=50.45 Aligned_cols=92 Identities=18% Similarity=0.112 Sum_probs=32.3
Q ss_pred HHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHH
Q 001390 187 IEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQR 266 (1088)
Q Consensus 187 i~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqR 266 (1088)
+..|..++..+......++.++-.+|..|.+|....++...=++-....-+...-..--..- |.. .-..|..+|||
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~---El~-EKe~l~~~~QR 165 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLES---ELD-EKESLLVSVQR 165 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHH
Confidence 33444444444455555555555566666665555555444433332222221111111111 111 12367788899
Q ss_pred HHHHHHhcCCChHHHhhhhHHHHhhc
Q 001390 267 LRVLVRKRLPGPAALAKMKNEVEILG 292 (1088)
Q Consensus 267 Lr~l~rk~lpgpaa~a~mk~eve~~~ 292 (1088)
||..+|- +|.|+..+.
T Consensus 166 LkdE~rD----------Lk~El~v~~ 181 (189)
T 2v71_A 166 LKDEARD----------LRQELAVRE 181 (189)
T ss_dssp --------------------------
T ss_pred HHHHHHH----------HHHHHHHHh
Confidence 8888774 566665544
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.25 E-value=0.51 Score=50.61 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC
Q 001390 254 VKKIAKLESECQRLRVLVRKRLPG 277 (1088)
Q Consensus 254 vKKIakLEaECqRLr~l~rk~lpg 277 (1088)
...+.+-.+++..-|..+.+.+|.
T Consensus 152 ~~e~~~e~~~l~~~r~~l~~~i~~ 175 (256)
T 3na7_A 152 VKNIKETQQIIFKKKEDLVEKTEP 175 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCH
Confidence 333333333444444445555543
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.16 E-value=0.15 Score=65.16 Aligned_cols=117 Identities=16% Similarity=0.172 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH----HHHHHHHHHHhhh---hhHhhhHHHHHhhcchHHHHHHHh
Q 001390 146 MEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALL----AKEKLIEDLGKQR---TQAEADSNALMVRLDSTEKENASL 218 (1088)
Q Consensus 146 ~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~----~~~~ii~eLkee~---s~~eaei~~Lq~rLE~~EKEn~sL 218 (1088)
..+.+...+||++|.+++.+|...+.+|..|...+. ....-+.+|+... ...+.+...++.++..++.++..|
T Consensus 917 ~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l 996 (1080)
T 2dfs_A 917 ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKL 996 (1080)
T ss_dssp ----------------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455678999999999999888888766653322 1112223332222 223334444444445555555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001390 219 KYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVR 272 (1088)
Q Consensus 219 KyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~r 272 (1088)
+.++..+.+|.+.+.+...-.. .+...++..|+.|-+.||..+.
T Consensus 997 ~~~~~~~~ke~~~lee~~~~~~----------~~L~~kv~~L~~e~~~L~qq~~ 1040 (1080)
T 2dfs_A 997 RKELHQTQTEKKTIEEWADKYK----------HETEQLVSELKEQNTLLKTEKE 1040 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555444422221111 2444777777777777776543
No 11
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.02 E-value=0.31 Score=52.27 Aligned_cols=78 Identities=12% Similarity=0.116 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001390 84 REKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETS 163 (1088)
Q Consensus 84 weKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~ 163 (1088)
...+...+..++..++++..+...++..+..+...+++...++..++ ..+=.+++.+.....+.....+|.++.++.
T Consensus 41 ~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~---~~kE~~aL~kEie~~~~~i~~lE~eile~~ 117 (256)
T 3na7_A 41 KEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK---SERELRSLNIEEDIAKERSNQANREIENLQ 117 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS---SSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666777777777776666665544 223333444444444444444444444443
Q ss_pred H
Q 001390 164 K 164 (1088)
Q Consensus 164 k 164 (1088)
.
T Consensus 118 e 118 (256)
T 3na7_A 118 N 118 (256)
T ss_dssp H
T ss_pred H
Confidence 3
No 12
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.63 E-value=0.35 Score=47.17 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 001390 860 VARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLES 902 (1088)
Q Consensus 860 eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr 902 (1088)
+++..++.+..++...+............+...|.+|+.+|+.
T Consensus 80 eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 80 QLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334443333333333333344444444444444443
No 13
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=95.60 E-value=0.15 Score=48.04 Aligned_cols=92 Identities=5% Similarity=0.055 Sum_probs=63.0
Q ss_pred chhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001390 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVD 864 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaE 864 (1088)
+.++..|+.++.+...+...+..++.....+...++..+..|+..+..++..+..++++|......++..+..+...+.+
T Consensus 8 KkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~e 87 (101)
T 3u1c_A 8 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESE 87 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666667776666666667777777777777777777777777777777766666666666666667
Q ss_pred HHHHHHHHhhHH
Q 001390 865 LNEACQKLSSLE 876 (1088)
Q Consensus 865 l~qlqeKVsSLE 876 (1088)
+..+.-||.-|+
T Consensus 88 v~~L~RriqllE 99 (101)
T 3u1c_A 88 VASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 777766666554
No 14
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.41 E-value=0.79 Score=44.66 Aligned_cols=100 Identities=16% Similarity=0.130 Sum_probs=52.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 001390 805 AIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSN 884 (1088)
Q Consensus 805 ~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~ 884 (1088)
...++..+...+...+....+|..+...+...+..+..+|......+.+++..+..+...-..+..++.-+...++....
T Consensus 18 ~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee 97 (129)
T 2fxo_A 18 MKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEE 97 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444445555555555555555555555555555555566666666555
Q ss_pred hhHHHHHHHHHHHHHHHhhh
Q 001390 885 CCEELEATCLELQLQLESVT 904 (1088)
Q Consensus 885 ~lEEl~aKc~eLeeQLEr~e 904 (1088)
...++.+...+++.+++.++
T Consensus 98 ~~~~L~~~kkkle~e~~~Lk 117 (129)
T 2fxo_A 98 MNAELTAKKRKLEDECSELK 117 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55556665555555555444
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.38 E-value=0.24 Score=63.23 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=12.4
Q ss_pred HHHhhcchHHHHHHHhhHHHHHHHH
Q 001390 203 ALMVRLDSTEKENASLKYEVRVLGK 227 (1088)
Q Consensus 203 ~Lq~rLE~~EKEn~sLKyEl~vlqk 227 (1088)
+|+.++..++++|..|+.++..++.
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555444443
No 16
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.98 E-value=1.7 Score=44.44 Aligned_cols=92 Identities=15% Similarity=0.135 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHH
Q 001390 145 SMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRV 224 (1088)
Q Consensus 145 s~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~v 224 (1088)
...++..+..|+..+..++..|..++..-.. .+.++.+|.+....+..+++.+..++.-.+-++..|.-.|..
T Consensus 57 ~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q-------~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~ 129 (168)
T 3o0z_A 57 NRILENSKSQTDKDYYQLQAILEAERRDRGH-------DSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNH 129 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666655332 347788888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHhHHhH
Q 001390 225 LGKELEIRNEEREFNRRTA 243 (1088)
Q Consensus 225 lqkELEIr~eEre~s~ksa 243 (1088)
++|+-.-+.....|-.+++
T Consensus 130 lEKe~a~~eid~~~eLKal 148 (168)
T 3o0z_A 130 SEKEKNNLEIDLNYKLKSL 148 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHH
Confidence 8888777777777776665
No 17
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.95 E-value=1.1 Score=63.03 Aligned_cols=78 Identities=15% Similarity=0.143 Sum_probs=37.9
Q ss_pred hhhHH---HHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHhHHHHHHHHHHH
Q 001390 82 TGREK---AEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQE--QRIHDAVMKASMEFEQSLMILE 156 (1088)
Q Consensus 82 ~GweK---aEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqE--qki~da~~kks~E~Ek~~~eLE 156 (1088)
.|-+| |...|+.++++|.+.+. .|+++-+..+..|++...+-..|-+.+. +.....+.++..+....+.+-|
T Consensus 1924 ~GL~KL~et~~~V~~l~~~L~~~~~---~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e 2000 (3245)
T 3vkg_A 1924 IGLKKLRDTEAQVKDLQVSLAQKNR---ELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAY 2000 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666 56666777766665444 5556656666666666655433322211 1122223333344444455555
Q ss_pred HHHHHH
Q 001390 157 EKLAET 162 (1088)
Q Consensus 157 ~kL~El 162 (1088)
++|+++
T Consensus 2001 ~dL~~A 2006 (3245)
T 3vkg_A 2001 ADLEKA 2006 (3245)
T ss_dssp HCC---
T ss_pred HHHhhc
Confidence 555443
No 18
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=94.84 E-value=0.29 Score=45.85 Aligned_cols=90 Identities=9% Similarity=0.050 Sum_probs=55.7
Q ss_pred hhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001390 786 SEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDL 865 (1088)
Q Consensus 786 eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl 865 (1088)
.++..|+.++.+...+...+..++.....+....+..+..|+..+..++..+..+++++......++..+..+...+.++
T Consensus 9 kKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~ev 88 (101)
T 3u59_A 9 KKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEV 88 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666666666666666666666666666666666666666666666666655666666666
Q ss_pred HHHHHHHhhH
Q 001390 866 NEACQKLSSL 875 (1088)
Q Consensus 866 ~qlqeKVsSL 875 (1088)
..+.-||.-|
T Consensus 89 asLnRriqll 98 (101)
T 3u59_A 89 ASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666555544
No 19
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=94.39 E-value=1.9 Score=43.67 Aligned_cols=90 Identities=16% Similarity=0.180 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHH-------HhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001390 798 RQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILK-------KSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQ 870 (1088)
Q Consensus 798 LE~rLq~~qekLE~lksQLeElE~kLeELksELesLe-------ES~selEeQLk~~~e~le~LesqL~eleaEl~qlqe 870 (1088)
++..|..+.++.+....++.+++..|..+...+.+++ +.-..++++|+.+..++..++.++...+-.+..++.
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk 105 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555544444444444 444555555555555555555555555555555555
Q ss_pred HHhhHHHHHHHhhhhhH
Q 001390 871 KLSSLEVELEDKSNCCE 887 (1088)
Q Consensus 871 KVsSLE~ELE~er~~lE 887 (1088)
-|+.|+.+|...+..+.
T Consensus 106 ~id~lEd~L~~~Kek~~ 122 (155)
T 2efr_A 106 SIDDLEDELYAQKLKYK 122 (155)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555544433333
No 20
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=94.21 E-value=1.7 Score=44.07 Aligned_cols=113 Identities=13% Similarity=0.205 Sum_probs=54.1
Q ss_pred HHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 001390 819 SQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQL 898 (1088)
Q Consensus 819 lE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLee 898 (1088)
++..|+--..........+..+++++......+..++..-......-..+..+|..|...+..-....+...+.+.+|+.
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk 105 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444433333333334444444445555555555555555555555555
Q ss_pred HHHhhhcCCCCcccchhhhhhhhhhHhHHHHHhhHHHHHHHHHHHHHHHhhc
Q 001390 899 QLESVTKSGIPTDELKQDEKQIQTDWEIATASEKLAECQETILNLGKQLKAL 950 (1088)
Q Consensus 899 QLEr~e~~~~~~~~~~~e~~~~kqe~EIaaAAeKLAECQETI~~LGKQLKaL 950 (1088)
.|.+++. +|.++=+|...+++.+-..-..|.+|
T Consensus 106 ~id~lEd-------------------~L~~~Kek~~~i~~eLd~tl~el~~~ 138 (155)
T 2efr_A 106 SIDDLED-------------------ELYAQKLKYKAISEEMKQLEDKVEEL 138 (155)
T ss_dssp HHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5554442 33344445555555555555555555
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.00 E-value=0.6 Score=54.72 Aligned_cols=117 Identities=13% Similarity=0.085 Sum_probs=51.3
Q ss_pred hhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHH-----------HHHHHhHHHHHHHHHHHHHHhhhHHHH
Q 001390 789 INVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNEL-----------DILKKSKEVIEDQVKLQKMINEDLDTQ 857 (1088)
Q Consensus 789 EqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksEL-----------esLeES~selEeQLk~~~e~le~Lesq 857 (1088)
++++.++..++..++.++.++......++..+.++.+..... +.+++.+..++.........+.....+
T Consensus 452 e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 531 (597)
T 3oja_B 452 EQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTE 531 (597)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHh
Confidence 334444444444444444444444444444444433333222 233333333333333333333334444
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhc
Q 001390 858 LKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTK 905 (1088)
Q Consensus 858 L~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~ 905 (1088)
..+.+.++..+++++..++..++..+....++..+...+..+|.....
T Consensus 532 ~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 532 ADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555555555555555555555555555554443
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.80 E-value=0.32 Score=56.97 Aligned_cols=28 Identities=11% Similarity=0.045 Sum_probs=11.2
Q ss_pred HHHHHhhHHHHHHHHHhHHHHHHHHHHH
Q 001390 820 QKIVSNSQNELDILKKSKEVIEDQVKLQ 847 (1088)
Q Consensus 820 E~kLeELksELesLeES~selEeQLk~~ 847 (1088)
+.++..++.++...+..+......+...
T Consensus 462 ~~~i~~l~~~~~~~~~~l~~~~~~i~~~ 489 (597)
T 3oja_B 462 RAEVQQLTNEQIQQEQLLQGLHAEIDTN 489 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3333444444444444444444443333
No 23
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=93.37 E-value=1.9 Score=40.47 Aligned_cols=87 Identities=14% Similarity=0.105 Sum_probs=58.7
Q ss_pred hhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001390 789 INVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEA 868 (1088)
Q Consensus 789 EqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~ql 868 (1088)
+.++..+..+......+.++.+....+++.++.....+..++.+|+..++.++..+......+......|....-.....
T Consensus 5 daIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~a 84 (101)
T 3u1c_A 5 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKA 84 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777788888888888888888888888888888888888888777776655555544444433333333
Q ss_pred HHHHhhH
Q 001390 869 CQKLSSL 875 (1088)
Q Consensus 869 qeKVsSL 875 (1088)
..-+.+|
T Consensus 85 E~ev~~L 91 (101)
T 3u1c_A 85 ESEVASL 91 (101)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 24
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=93.22 E-value=1.1 Score=43.26 Aligned_cols=100 Identities=15% Similarity=0.071 Sum_probs=53.0
Q ss_pred hHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001390 791 VEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQ 870 (1088)
Q Consensus 791 LesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqe 870 (1088)
++..+.++...+..+...-..+..++..+...++.++.+.+.--..-..+|..|..+...+ -....---.+..
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~l-------D~~~l~r~dLE~ 90 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDV-------DNASLARLDLER 90 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcc-------cHHHHHHHHHHH
Confidence 3444445555554444444444444444444555555544443333444444444433222 222333345778
Q ss_pred HHhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001390 871 KLSSLEVELEDKSNCCEELEATCLELQLQL 900 (1088)
Q Consensus 871 KVsSLE~ELE~er~~lEEl~aKc~eLeeQL 900 (1088)
++.+|..||.|.++.+++ .+.+|+.||
T Consensus 91 ~iesL~eEl~FLKk~hee---El~eLq~qi 117 (119)
T 3ol1_A 91 KVESLQEEIAFLKKLHEE---EIQELQAQI 117 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 899999999999888873 444444443
No 25
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=92.21 E-value=3.4 Score=38.57 Aligned_cols=87 Identities=16% Similarity=0.148 Sum_probs=55.8
Q ss_pred hhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001390 789 INVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEA 868 (1088)
Q Consensus 789 EqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~ql 868 (1088)
+.++..+..+......+.++.+....++..++.....+..++.+++..+..++.++......+..+...|...+-.....
T Consensus 5 d~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~A 84 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDA 84 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777777777777777777777777777777777777777777777766555555444444443333333
Q ss_pred HHHHhhH
Q 001390 869 CQKLSSL 875 (1088)
Q Consensus 869 qeKVsSL 875 (1088)
..-|.+|
T Consensus 85 E~evasL 91 (101)
T 3u59_A 85 EAEVASL 91 (101)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 26
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.20 E-value=0.97 Score=43.95 Aligned_cols=83 Identities=14% Similarity=0.177 Sum_probs=31.2
Q ss_pred hhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001390 788 FINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNE 867 (1088)
Q Consensus 788 LEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~q 867 (1088)
++.+..........+..+...+..++-+++.++-+| +.++..+..++.++.+....+ ..++..
T Consensus 17 ~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el-------~~l~~~~~~LE~~l~e~e~~~----------~~~l~~ 79 (129)
T 3tnu_B 17 YEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEI-------DNVKKQCANLQNAIADAEQRG----------ELALKD 79 (129)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH----------HHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHH----------HHHHHH
Confidence 333444433333444444444444444444444444 444444444444444433323 234445
Q ss_pred HHHHHhhHHHHHHHhhhhhH
Q 001390 868 ACQKLSSLEVELEDKSNCCE 887 (1088)
Q Consensus 868 lqeKVsSLE~ELE~er~~lE 887 (1088)
.+.+|..|+.+|...+..++
T Consensus 80 ~q~~i~~lE~eL~~~r~e~~ 99 (129)
T 3tnu_B 80 ARNKLAELEEALQKAKQDMA 99 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 55666666666665555444
No 27
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=91.86 E-value=1.1 Score=44.90 Aligned_cols=100 Identities=30% Similarity=0.347 Sum_probs=64.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHH
Q 001390 799 QECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVE 878 (1088)
Q Consensus 799 E~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~E 878 (1088)
+.+|...+.+++.......+.+.....|...-..-.+.+..++.+|+....+.++.+.. +....-|+.-++.+
T Consensus 16 eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrK-------yeE~~RKl~~~E~d 88 (147)
T 2b9c_A 16 QERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRK-------YEEVARKLVIIESD 88 (147)
T ss_dssp GTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHH
Confidence 33344444444444444455555555666666666777777777777766555544444 44666677777788
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHhhhc
Q 001390 879 LEDKSNCCEELEATCLELQLQLESVTK 905 (1088)
Q Consensus 879 LE~er~~lEEl~aKc~eLeeQLEr~e~ 905 (1088)
|+.-....+.+..+|.+|+.+|..+..
T Consensus 89 LeraeeRae~aE~k~~eLEeeL~~~~~ 115 (147)
T 2b9c_A 89 LERAEERAELSEGKCAELEEELKTVTN 115 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888788888888888888888885543
No 28
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=91.83 E-value=0.17 Score=47.88 Aligned_cols=73 Identities=25% Similarity=0.469 Sum_probs=56.5
Q ss_pred hhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHH----------hHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001390 199 ADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRR----------TADESHKQHLESVKKIAKLESECQRLR 268 (1088)
Q Consensus 199 aei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~k----------saEaA~KQhlEsvKKIakLEaECqRLr 268 (1088)
.++..++.+++.++.|+..|+.++..++-+|+-|.-.-+|+.. =+..|..++ .+.+.+|.+||.|||
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~---~~~~e~Lq~E~erLr 88 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRL---REDHSQLQAECERLR 88 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3677888999999999999999999999998776544565441 133444443 488999999999999
Q ss_pred HHHHhc
Q 001390 269 VLVRKR 274 (1088)
Q Consensus 269 ~l~rk~ 274 (1088)
..||+-
T Consensus 89 ~~v~~l 94 (100)
T 1go4_E 89 GLLRAM 94 (100)
T ss_dssp HHHTTC
T ss_pred HHHHHH
Confidence 999873
No 29
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.69 E-value=0.9 Score=44.33 Aligned_cols=83 Identities=14% Similarity=0.087 Sum_probs=29.2
Q ss_pred hhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001390 788 FINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNE 867 (1088)
Q Consensus 788 LEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~q 867 (1088)
++.++.........+..+...+..++-+++.++-+|..++.+...|+..+.+++.. + ..++..
T Consensus 19 ~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~-------~----------~~~l~~ 81 (131)
T 3tnu_A 19 TEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGR-------Y----------CMQLAQ 81 (131)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H----------HHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------H----------HHHHHH
Confidence 44444444444444444444444444444444444444444444444444444332 2 234445
Q ss_pred HHHHHhhHHHHHHHhhhhhH
Q 001390 868 ACQKLSSLEVELEDKSNCCE 887 (1088)
Q Consensus 868 lqeKVsSLE~ELE~er~~lE 887 (1088)
.+.+|..|+.+|...+..++
T Consensus 82 ~q~~i~~lE~eL~~~r~em~ 101 (131)
T 3tnu_A 82 IQEMIGSVEEQLAQLRCEME 101 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55556666666655555444
No 30
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=90.85 E-value=1.9 Score=38.80 Aligned_cols=60 Identities=13% Similarity=0.095 Sum_probs=29.2
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 001390 793 AGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINE 852 (1088)
Q Consensus 793 sEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le 852 (1088)
..+..+...+..+.++++....++++.+.....+..++..++..++.++.+|....+.+.
T Consensus 6 kKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~ 65 (81)
T 1ic2_A 6 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLK 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444555555555555555555555555555555444443333
No 31
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=90.53 E-value=3.3 Score=39.86 Aligned_cols=84 Identities=18% Similarity=0.158 Sum_probs=51.2
Q ss_pred HHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001390 821 KIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQL 900 (1088)
Q Consensus 821 ~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQL 900 (1088)
..|.+|+.++..+...+..++-++..+....++...+|...-..-....+-+.+|++.++..--.--+++.+++-|+++|
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl 99 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555554443333344455566777777776666677888888888888
Q ss_pred Hhhh
Q 001390 901 ESVT 904 (1088)
Q Consensus 901 Er~e 904 (1088)
.=++
T Consensus 100 ~FLK 103 (119)
T 3ol1_A 100 AFLK 103 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7443
No 32
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=90.28 E-value=2.7 Score=48.06 Aligned_cols=97 Identities=20% Similarity=0.357 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhh
Q 001390 115 LDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQR 194 (1088)
Q Consensus 115 Ld~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~ 194 (1088)
.+.+|+++.+++ +.+.+.... ..|+......|+.+|.++++.+..+++....-.+++. .+..+|-.++
T Consensus 371 ~eeal~~~~~~i--------~~~l~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 438 (471)
T 3mq9_A 371 VDEALKDAQTRI--------TAARDGLRA-VMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVM---ALMASLDAEK 438 (471)
T ss_dssp HHHHHHHHHHHH--------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------HHHHHhhHH-HHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHH---HHHHHHHHHH
Confidence 456666666666 223333333 4577788889999999999999988888665554444 3445555555
Q ss_pred hhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHH
Q 001390 195 TQAEADSNALMVRLDSTEKENASLKYEVRVLGKELE 230 (1088)
Q Consensus 195 s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELE 230 (1088)
++.. ++++.+|.|+..|..+|+-+..+++
T Consensus 439 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 439 AQGQ-------KKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5433 4666666667777666666665554
No 33
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.22 E-value=9 Score=38.77 Aligned_cols=92 Identities=13% Similarity=0.211 Sum_probs=44.0
Q ss_pred hhHHHHHHHHhhcccchhHHHH---hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhh
Q 001390 51 NLNDKLFSALAECNAKDDLVKK---HAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLH 127 (1088)
Q Consensus 51 ~l~ekLs~a~~~~~~kd~lvkq---h~kvaeeav~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr 127 (1088)
+||.||-.|+-..+.=||=+-. .-..+...+.+.|.+..+... +..++++.+..++.++..|
T Consensus 3 sLStKLI~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~--------------l~~~~~~~~~e~~~L~~~l- 67 (154)
T 2ocy_A 3 ALSTQLIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNT--------------LKRELSDRDDEVKRLREDI- 67 (154)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH--------------HHTHHHHHHHHHHHHHHHH-
T ss_pred chHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHhhhhHHHHHHHHHH-
Confidence 4666666665555444442221 112233445555544433332 2334556666666666655
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001390 128 FVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAK 168 (1088)
Q Consensus 128 ~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k 168 (1088)
..++.. ..+.++.+..++..|.+|...|=.
T Consensus 68 ----~~E~~~-------R~~aE~~~~~ie~ElEeLTasLFe 97 (154)
T 2ocy_A 68 ----AKENEL-------RTKAEEEADKLNKEVEDLTASLFD 97 (154)
T ss_dssp ----HHHHHH-------HHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 233344455666666666665533
No 34
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.30 E-value=8.7 Score=38.86 Aligned_cols=97 Identities=18% Similarity=0.158 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHH--------HHHHHHHHHHHHHhhHHHHH
Q 001390 808 KSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLK--------VARVDLNEACQKLSSLEVEL 879 (1088)
Q Consensus 808 kLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~--------eleaEl~qlqeKVsSLE~EL 879 (1088)
++..+..++...+.++..|..++..-...-..+|.....+...+++|...|. ..+.+.+.+..|+..|+..+
T Consensus 45 ~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql 124 (154)
T 2ocy_A 45 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQL 124 (154)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555555555555555555555555555555555555555443 34455555566666666666
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHhhh
Q 001390 880 EDKSNCCEELEATCLELQLQLESVT 904 (1088)
Q Consensus 880 E~er~~lEEl~aKc~eLeeQLEr~e 904 (1088)
...+..+..+...+..|+.=++.+.
T Consensus 125 ~e~~~~l~~lq~ql~~LK~v~~~m~ 149 (154)
T 2ocy_A 125 REKDTLLDTLTLQLKNLKKVMHSLD 149 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666666666666666655555444
No 35
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=88.98 E-value=2.6 Score=37.91 Aligned_cols=70 Identities=7% Similarity=-0.034 Sum_probs=52.5
Q ss_pred chhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhH
Q 001390 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDL 854 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~L 854 (1088)
..++..|+.++.+...+...++.+++....+...++..+..|+..+..++..+..+++++......++..
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777777777777777777777777777777777777777777777777666543
No 36
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=88.85 E-value=7.6 Score=36.22 Aligned_cols=80 Identities=9% Similarity=0.091 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHH
Q 001390 810 NSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEEL 889 (1088)
Q Consensus 810 E~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl 889 (1088)
..+...-..+..+|.+|..+...+...+..++.+.......-...=..++....++...++...+|+..+.+-.+.+.-|
T Consensus 14 ~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 14 KELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444445555555555555555555555444444444455677777778888888888877777766665533
No 37
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=88.71 E-value=12 Score=36.09 Aligned_cols=98 Identities=17% Similarity=0.112 Sum_probs=68.9
Q ss_pred hhhhHhhhhHHHHHHHHHHHhHHHHHH----HHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001390 788 FINVEAGNKVRQECLVSAIDKSNSLMS----QLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARV 863 (1088)
Q Consensus 788 LEqLesEK~eLE~rLq~~qekLE~lks----QLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~elea 863 (1088)
...|+.....+..+...+..++..... .+..++..|..|......+..-+..+|-.-....-..+...+-|..++.
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~ 84 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQ 84 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHH
Confidence 344666666777777777766665543 4555666666666666666666666666666666666666777788888
Q ss_pred HHHHHHHHHhhHHHHHHHhhhh
Q 001390 864 DLNEACQKLSSLEVELEDKSNC 885 (1088)
Q Consensus 864 El~qlqeKVsSLE~ELE~er~~ 885 (1088)
.+++..++.--|+.||..+...
T Consensus 85 k~n~aiErnalLE~El~EKe~L 106 (111)
T 2v66_B 85 RLNQAIERNAFLESELDEKESL 106 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999865543
No 38
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=87.24 E-value=3.8 Score=37.50 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=10.6
Q ss_pred HHHHHHhhHHHHHHHhhhh
Q 001390 867 EACQKLSSLEVELEDKSNC 885 (1088)
Q Consensus 867 qlqeKVsSLE~ELE~er~~ 885 (1088)
.+..+|++|..||.|.++.
T Consensus 67 dLE~kvesL~eEl~fLkk~ 85 (86)
T 3swk_A 67 DLERKVESLQEEIAFLKKL 85 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 4455566666666665543
No 39
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=87.20 E-value=6.4 Score=44.76 Aligned_cols=97 Identities=9% Similarity=0.200 Sum_probs=52.4
Q ss_pred hhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHH----HHHh-hhHHHHHHHHHHH
Q 001390 790 NVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQ----KMIN-EDLDTQLKVARVD 864 (1088)
Q Consensus 790 qLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~----~e~l-e~LesqL~eleaE 864 (1088)
.++..++.|.+.|..++.....+..-+..+-..+..-.++....+..+.++.++|+.. +... .++- .|..|+.-
T Consensus 64 ~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~-~ir~Lq~~ 142 (390)
T 1deq_A 64 DFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ-RINLLQKN 142 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHH
Confidence 4666667777777766666666666666666666655555555554444444333332 2221 1222 44445555
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhH
Q 001390 865 LNEACQKLSSLEVELEDKSNCCE 887 (1088)
Q Consensus 865 l~qlqeKVsSLE~ELE~er~~lE 887 (1088)
+..+..+|..||..|++.+.-|.
T Consensus 143 l~~q~~kiqRLE~~Id~c~~~C~ 165 (390)
T 1deq_A 143 VRDQLVDMKRLEVDIDIKIRSCK 165 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 55555556666666655544443
No 40
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=86.50 E-value=5.5 Score=46.93 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001390 853 DLDTQLKVARVDLNEACQKLSSLEVELED 881 (1088)
Q Consensus 853 ~LesqL~eleaEl~qlqeKVsSLE~ELE~ 881 (1088)
+|+.++..++.++..+.+.|..|+.-|+.
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLed 142 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRA 142 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666656555444443
No 41
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=86.39 E-value=9 Score=38.32 Aligned_cols=96 Identities=16% Similarity=0.060 Sum_probs=40.7
Q ss_pred chhhhhhHhhhhHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHH
Q 001390 785 GSEFINVEAGNKVRQECLVSAIDKSNSLM-------SQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQ 857 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qekLE~lk-------sQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~Lesq 857 (1088)
+++++..+.........|..+......+. ++-..-+.++..|..+|..++..-...+..+....-.+..++..
T Consensus 9 EeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~d 88 (147)
T 2b9c_A 9 EEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESD 88 (147)
T ss_dssp --CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45555555555555555554444444333 33333334444444444444444444444444433333333333
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHH
Q 001390 858 LKVARVDLNEACQKLSSLEVELE 880 (1088)
Q Consensus 858 L~eleaEl~qlqeKVsSLE~ELE 880 (1088)
|...+-.......++..|+.+|.
T Consensus 89 LeraeeRae~aE~k~~eLEeeL~ 111 (147)
T 2b9c_A 89 LERAEERAELSEGKCAELEEELK 111 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 42
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=86.27 E-value=5.1 Score=39.68 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhhHHHH
Q 001390 861 ARVDLNEACQKLSSLEVE 878 (1088)
Q Consensus 861 leaEl~qlqeKVsSLE~E 878 (1088)
++-+++.++.++-.|+.+
T Consensus 115 l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 115 LKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 43
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.47 E-value=6.3 Score=45.20 Aligned_cols=33 Identities=3% Similarity=-0.156 Sum_probs=12.5
Q ss_pred hhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHH
Q 001390 788 FINVEAGNKVRQECLVSAIDKSNSLMSQLQESQ 820 (1088)
Q Consensus 788 LEqLesEK~eLE~rLq~~qekLE~lksQLeElE 820 (1088)
+..++.++..++.....+...+...+....+.+
T Consensus 355 ~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~ 387 (487)
T 3oja_A 355 VTLRKQAKITLEQKKKALDEQVSNGRRAHAELD 387 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333444333333333333333333333333333
No 44
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=85.23 E-value=4 Score=48.03 Aligned_cols=30 Identities=13% Similarity=0.306 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 001390 856 TQLKVARVDLNEACQKLSSLEVELEDKSNC 885 (1088)
Q Consensus 856 sqL~eleaEl~qlqeKVsSLE~ELE~er~~ 885 (1088)
.++..|+.-+..+..+|..||+.|.-.-+.
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdiqirs 160 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDIKIRS 160 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444443333
No 45
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=85.17 E-value=7 Score=38.71 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=16.1
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001390 865 LNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLE 901 (1088)
Q Consensus 865 l~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLE 901 (1088)
+...+.+++.++++++..+..+.++..++.+|+.++.
T Consensus 98 l~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 98 LIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444443
No 46
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=85.16 E-value=13 Score=35.96 Aligned_cols=44 Identities=7% Similarity=0.101 Sum_probs=26.5
Q ss_pred hhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHH
Q 001390 786 SEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNE 829 (1088)
Q Consensus 786 eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksE 829 (1088)
+.+...+.++.++...++..+.+++.++.+...++..|.+.+..
T Consensus 29 ~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~ 72 (129)
T 3tnu_B 29 DDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQR 72 (129)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34555667777777777777777777777766666666665543
No 47
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=84.60 E-value=5.5 Score=36.44 Aligned_cols=79 Identities=19% Similarity=0.178 Sum_probs=42.9
Q ss_pred HHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001390 823 VSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLE 901 (1088)
Q Consensus 823 LeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLE 901 (1088)
|.+|+.|+..+.-.+..++-++..+....++....|..--.--....+-+.+|++.+...--.-.++++++.-|+++|.
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555566666565555555444444444322223333344555555555555555567777777777765
No 48
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=84.50 E-value=11 Score=36.55 Aligned_cols=89 Identities=8% Similarity=0.054 Sum_probs=41.0
Q ss_pred hhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHH----HHHHHhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 001390 786 SEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNEL----DILKKSKEVIEDQVKLQKMINEDLDTQLKVA 861 (1088)
Q Consensus 786 eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksEL----esLeES~selEeQLk~~~e~le~LesqL~el 861 (1088)
+.+...+.++.++...++..+.+++.++.+...++..|.+++... ..++..+..++.++..+. ......
T Consensus 31 ~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r-------~em~~q 103 (131)
T 3tnu_A 31 ELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLR-------CEMEQQ 103 (131)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 345556666666666777777666666666666666666655432 333333444444333332 222223
Q ss_pred HHHHHHHHHHHhhHHHHHHH
Q 001390 862 RVDLNEACQKLSSLEVELED 881 (1088)
Q Consensus 862 eaEl~qlqeKVsSLE~ELE~ 881 (1088)
..++..+.+-.-+|+.||.-
T Consensus 104 l~EYq~Ll~vKl~Ld~EIat 123 (131)
T 3tnu_A 104 NQEYKILLDVKTRLEQEIAT 123 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555543
No 49
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.42 E-value=22 Score=33.42 Aligned_cols=17 Identities=12% Similarity=-0.068 Sum_probs=6.7
Q ss_pred HHHHHHHHHhhHHHHHH
Q 001390 864 DLNEACQKLSSLEVELE 880 (1088)
Q Consensus 864 El~qlqeKVsSLE~ELE 880 (1088)
+.+.+..|...|+.+|.
T Consensus 77 e~~~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 77 EKYAIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33333344444444433
No 50
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=83.89 E-value=13 Score=34.56 Aligned_cols=29 Identities=7% Similarity=0.161 Sum_probs=10.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhHHH
Q 001390 801 CLVSAIDKSNSLMSQLQESQKIVSNSQNE 829 (1088)
Q Consensus 801 rLq~~qekLE~lksQLeElE~kLeELksE 829 (1088)
.+..+..++..++.....++.++..++..
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~ 39 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIGDLKTA 39 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 51
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=82.74 E-value=16 Score=35.23 Aligned_cols=100 Identities=14% Similarity=0.132 Sum_probs=46.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001390 82 TGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAE 161 (1088)
Q Consensus 82 ~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~E 161 (1088)
+-|++..++...++.+|...-.....|++- + ..+.++...-...|..++..
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~--------------w---------------~~k~E~~k~qV~~L~~~~q~ 56 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQELEDF--------------I---------------KQSSEDSSHQISALVLRAQA 56 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H---------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H---------------HHHHHHHHHHHHHHHHHHHH
Confidence 568888888887777777665555444443 2 12222222233334444444
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhH
Q 001390 162 TSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKY 220 (1088)
Q Consensus 162 l~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKy 220 (1088)
.+..|..++..- .....+..++++.+....+.+..+|.-++++|..|..
T Consensus 57 sE~~L~~Lqq~f----------sq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~G 105 (112)
T 1x79_B 57 SEILLEELQQGL----------SQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQG 105 (112)
T ss_dssp HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 444444443331 1233344555666777777888888999999988864
No 52
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.05 E-value=13 Score=42.49 Aligned_cols=40 Identities=18% Similarity=0.143 Sum_probs=29.3
Q ss_pred chhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001390 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVS 824 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLe 824 (1088)
.++...++.++..++..+...+.........+++..++++
T Consensus 359 ~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e 398 (487)
T 3oja_A 359 KQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIE 398 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhh
Confidence 3444478888888888888888888877777777766555
No 53
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=81.61 E-value=4.3 Score=40.24 Aligned_cols=114 Identities=14% Similarity=0.099 Sum_probs=46.9
Q ss_pred chhhhhhHhhhhHHHHHHHHHHH---hHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHH--
Q 001390 785 GSEFINVEAGNKVRQECLVSAID---KSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLK-- 859 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qe---kLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~-- 859 (1088)
++++-.....+.....++..+.. ++..+...+.....++..|..++..-...-..+|.....+...+++|...|.
T Consensus 7 Ed~L~~~r~~l~~~~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeE 86 (135)
T 2e7s_A 7 EEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDE 86 (135)
T ss_dssp CSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555444444443332 2333333333344555555554444333444444444444444444444333
Q ss_pred ------HHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 001390 860 ------VARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQL 898 (1088)
Q Consensus 860 ------eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLee 898 (1088)
..+.+.+.+..|+..|+..+...+..+..+..++.+|+.
T Consensus 87 AN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~ 131 (135)
T 2e7s_A 87 ANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKK 131 (135)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234444555555555655555555555555544444443
No 54
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=81.26 E-value=16 Score=42.71 Aligned_cols=53 Identities=11% Similarity=0.001 Sum_probs=24.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 001390 799 QECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMIN 851 (1088)
Q Consensus 799 E~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~l 851 (1088)
...|+.+...+..+.+...+++..+..|+..+...+.++...+..++....++
T Consensus 99 ~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~ 151 (464)
T 1m1j_B 99 KPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEM 151 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 33344444444444444444444445555555555555554444444444333
No 55
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=81.13 E-value=16 Score=35.02 Aligned_cols=30 Identities=23% Similarity=0.221 Sum_probs=13.1
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 001390 873 SSLEVELEDKSNCCEELEATCLELQLQLES 902 (1088)
Q Consensus 873 sSLE~ELE~er~~lEEl~aKc~eLeeQLEr 902 (1088)
.-++...+-++..-+.+..+..+|+.+|..
T Consensus 72 ~IY~~DF~aERadREkl~~eKe~L~~ql~~ 101 (110)
T 2v4h_A 72 DIYKADFQAERHAREKLVEKKEYLQEQLEQ 101 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccchhhHHHHHhHHHHHHHHHHH
Confidence 333344444444444444444444444443
No 56
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=81.13 E-value=11 Score=38.09 Aligned_cols=62 Identities=23% Similarity=0.244 Sum_probs=50.7
Q ss_pred HHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001390 820 QKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELED 881 (1088)
Q Consensus 820 E~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~ 881 (1088)
...|..|+.++..++..+..++..++.....++.+..++..++++++.+..|+..|+.|-..
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~ 128 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQ 128 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888888888888888888888888888888999999988888888776543
No 57
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=80.15 E-value=16 Score=33.42 Aligned_cols=53 Identities=19% Similarity=0.262 Sum_probs=22.9
Q ss_pred HHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhH
Q 001390 823 VSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSL 875 (1088)
Q Consensus 823 LeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSL 875 (1088)
|.-|+-+++.|++.+..+..+..........+..+...++.+...-+.++.+|
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444433333334444444444444444444444
No 58
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=79.34 E-value=20 Score=34.32 Aligned_cols=34 Identities=6% Similarity=-0.046 Sum_probs=17.1
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhH
Q 001390 794 GNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQ 827 (1088)
Q Consensus 794 EK~eLE~rLq~~qekLE~lksQLeElE~kLeELk 827 (1088)
++..|..+|..+++.+..-+.++.++..++..+.
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~ 58 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHK 58 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554455555444444433
No 59
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=79.18 E-value=15 Score=34.43 Aligned_cols=77 Identities=13% Similarity=0.100 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhh
Q 001390 825 NSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVT 904 (1088)
Q Consensus 825 ELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e 904 (1088)
.|..+|..+++.+.....++..+++....... ..-.+.-+...+.-++.+.+.+|..-+.+..+..+|+.++..+.
T Consensus 6 ~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~----~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq 81 (94)
T 3jsv_C 6 DLRQQLQQAEEALVAKQELIDKLKEEAEQHKI----VMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ 81 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444444444444444444444433322211 11233344455556666666666666666666666666666544
Q ss_pred c
Q 001390 905 K 905 (1088)
Q Consensus 905 ~ 905 (1088)
.
T Consensus 82 ~ 82 (94)
T 3jsv_C 82 R 82 (94)
T ss_dssp H
T ss_pred H
Confidence 3
No 60
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=78.60 E-value=43 Score=31.17 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHhh
Q 001390 887 EELEATCLELQLQLESV 903 (1088)
Q Consensus 887 EEl~aKc~eLeeQLEr~ 903 (1088)
..+..++...+.+|.++
T Consensus 77 ~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 77 KSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33344444444444443
No 61
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=77.73 E-value=20 Score=33.26 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=15.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHH
Q 001390 804 SAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVI 840 (1088)
Q Consensus 804 ~~qekLE~lksQLeElE~kLeELksELesLeES~sel 840 (1088)
.+..+++.+..++..+...+..+++++..++..+..+
T Consensus 7 ~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 7 ELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444444444333
No 62
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=77.50 E-value=59 Score=32.23 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=21.4
Q ss_pred hHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHH
Q 001390 791 VEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIE 841 (1088)
Q Consensus 791 LesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selE 841 (1088)
+..+...|......+...+..+..+..+++..+.+|....+.+++.+..+.
T Consensus 27 l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~ 77 (155)
T 2oto_A 27 LRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQ 77 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444443333333
No 63
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=76.95 E-value=32 Score=31.85 Aligned_cols=33 Identities=15% Similarity=0.021 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhH
Q 001390 795 NKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQ 827 (1088)
Q Consensus 795 K~eLE~rLq~~qekLE~lksQLeElE~kLeELk 827 (1088)
+..|-.++.++-++.-.+..+-+.++.+|..++
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666777777766655555555555555444
No 64
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=76.76 E-value=35 Score=31.19 Aligned_cols=11 Identities=18% Similarity=0.184 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 001390 890 EATCLELQLQL 900 (1088)
Q Consensus 890 ~aKc~eLeeQL 900 (1088)
..++.+++.+|
T Consensus 76 E~~l~el~~rl 86 (89)
T 3bas_A 76 ENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 33344444433
No 65
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=76.27 E-value=29 Score=33.42 Aligned_cols=83 Identities=13% Similarity=0.169 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHH
Q 001390 146 MEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVL 225 (1088)
Q Consensus 146 ~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vl 225 (1088)
.+|++++.+ +..+...|.++.++ |..+...+++.+.....++..|+.+.+..|..+.+|+..+..+
T Consensus 6 ~~~~~lq~~----~~ql~~qL~k~~~~----------r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~ 71 (112)
T 1x79_B 6 DQVKKLQLM----LRQANDQLEKTMKD----------KQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQA 71 (112)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467765544 46676677666665 4556667888888888999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHhHHh
Q 001390 226 GKELEIRNEEREFNRRT 242 (1088)
Q Consensus 226 qkELEIr~eEre~s~ks 242 (1088)
........-+...+++.
T Consensus 72 q~~vq~qL~~Lt~~Re~ 88 (112)
T 1x79_B 72 KRDVQEQMAVLMQSREQ 88 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77766555555554444
No 66
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=75.85 E-value=65 Score=31.84 Aligned_cols=116 Identities=22% Similarity=0.210 Sum_probs=69.2
Q ss_pred hhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001390 786 SEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDL 865 (1088)
Q Consensus 786 eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl 865 (1088)
..+-.++.....+..++++.+..++..-.=+.+-+.++..|++.-...++.++.+-.++....-.++-.+..|..--.+.
T Consensus 11 ~~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQ 90 (167)
T 4gkw_A 11 DEVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQ 90 (167)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHH
Confidence 34556666777777777777776666656666666667777666666666666665554444444443444443333333
Q ss_pred HHHH---HHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001390 866 NEAC---QKLSSLEVELEDKSNCCEELEATCLELQLQLE 901 (1088)
Q Consensus 866 ~qlq---eKVsSLE~ELE~er~~lEEl~aKc~eLeeQLE 901 (1088)
+++. -|+.-|+..|..+..-.+.+-..|--|..+|+
T Consensus 91 nQQSlDiRKLrELEADLKEKDsMVe~LT~TiG~LrKELE 129 (167)
T 4gkw_A 91 NQQSLDMRKLGELEADLKEKDSMVESLTETIGILRKELE 129 (167)
T ss_dssp HHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 3322 24455677777777777777777777766666
No 67
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=75.15 E-value=7.5 Score=38.56 Aligned_cols=86 Identities=15% Similarity=0.179 Sum_probs=34.4
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 001390 112 LIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLG 191 (1088)
Q Consensus 112 vkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLk 191 (1088)
+++.+..++.+...+ ..++.... +.|..+..++..|.+|...|=...- +|+..-+
T Consensus 41 l~~~~~e~~~L~~~l-----~eE~~~R~-------~aE~~~~~ie~ElE~LTasLFeEAN-------------~MVa~ar 95 (135)
T 2e7s_A 41 LSDRDDEVKRLREDI-----AKENELRT-------KAEEEADKLNKEVEDLTASLFDEAN-------------NLVADAR 95 (135)
T ss_dssp TTTHHHHHHTHHHHH-----HHTTSHHH-------HHHHTTHHHHHHHHHHHHHHHHHHH-------------HHHHHTT
T ss_pred HhhhHHHHHHHHHHH-----HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHH
Confidence 466777777777666 33333322 2333344555555555554433221 1222222
Q ss_pred hh-------hhhHhhhHHHHHhhcchHHHHHHHhhHHH
Q 001390 192 KQ-------RTQAEADSNALMVRLDSTEKENASLKYEV 222 (1088)
Q Consensus 192 ee-------~s~~eaei~~Lq~rLE~~EKEn~sLKyEl 222 (1088)
.+ -..+...+.+....|+.++.+++.||+-+
T Consensus 96 ~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~v~ 133 (135)
T 2e7s_A 96 MEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKKVM 133 (135)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 23344455555666777777777776543
No 68
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=74.51 E-value=14 Score=32.83 Aligned_cols=57 Identities=25% Similarity=0.282 Sum_probs=43.0
Q ss_pred HHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHH
Q 001390 822 IVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVE 878 (1088)
Q Consensus 822 kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~E 878 (1088)
.++-|+++|..-..++..+++-+.--..-++-+..++.-+++|-+-++.|+..|++|
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~E 75 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKKE 75 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhcC
Confidence 566677777777777777777777777778888999999999999999998887654
No 69
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=73.89 E-value=11 Score=38.10 Aligned_cols=54 Identities=24% Similarity=0.263 Sum_probs=36.1
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhh
Q 001390 166 LAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLK 219 (1088)
Q Consensus 166 L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLK 219 (1088)
+...+.+...|...|.+|.+.+..|+++......++..+..++..+++||..|=
T Consensus 77 l~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 77 LKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444456677778888888877777777777777777777776663
No 70
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=73.57 E-value=29 Score=39.62 Aligned_cols=96 Identities=13% Similarity=0.126 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhH
Q 001390 796 KVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSL 875 (1088)
Q Consensus 796 ~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSL 875 (1088)
.++.++++.+...+..+..--..+...+..+..-+..-.......+.-|.+.. ++|+.++..++..+..+...|..|
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s---~eLe~~i~~lk~~V~~q~~~ir~L 139 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQIN---EDLRSRIEILRRKVIEQVQRINLL 139 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34444454555444444444444444444444444444444444444444433 344555555555555555544444
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001390 876 EVELEDKSNCCEELEATCLELQLQLE 901 (1088)
Q Consensus 876 E~ELE~er~~lEEl~aKc~eLeeQLE 901 (1088)
+..++.+..+|+.|+.-|+
T Consensus 140 -------q~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 140 -------QKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred -------HHHHHHHHHHHHHHHHHHH
Confidence 4455556666667777665
No 71
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=72.10 E-value=30 Score=32.89 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=67.1
Q ss_pred hHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001390 196 QAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKR 274 (1088)
Q Consensus 196 ~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk~ 274 (1088)
.++..+...+.--+-+..+-++|-|+|..+--.|+-+.+...-.+|....-.+........+..|..++..|+..++-|
T Consensus 6 EvEEKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qR 84 (103)
T 4h22_A 6 EVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQR 84 (103)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777778888999999999999999999999999999999999999999999999999999999888765
No 72
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=71.12 E-value=62 Score=36.83 Aligned_cols=72 Identities=17% Similarity=0.118 Sum_probs=30.4
Q ss_pred HHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHH
Q 001390 821 KIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLE 895 (1088)
Q Consensus 821 ~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~e 895 (1088)
.--..|+.+|..+++....++.|-..-+.-.-.|..- ++.+..+.+.||.-|+.|+......++++.+++++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMAS---LDAEKAQGQKKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555443322111111111 22333333344444544444444444444444433
No 73
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=71.12 E-value=28 Score=33.12 Aligned_cols=79 Identities=13% Similarity=0.116 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhh
Q 001390 808 KSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCC 886 (1088)
Q Consensus 808 kLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~l 886 (1088)
+....+.....+...-..|.=|++.|+..+.++++.+-...-.+++....+..++-....++..+..|+..|..+...+
T Consensus 10 KyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~LI 88 (103)
T 4h22_A 10 KYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEML 88 (103)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444555555555555444444433333333333333333333333333444444433333
No 74
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=69.30 E-value=47 Score=30.78 Aligned_cols=31 Identities=29% Similarity=0.357 Sum_probs=13.7
Q ss_pred HhhHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 001390 872 LSSLEVELEDKSNCCEELEATCLELQLQLES 902 (1088)
Q Consensus 872 VsSLE~ELE~er~~lEEl~aKc~eLeeQLEr 902 (1088)
++.++.++......+..+..++.+++.+|..
T Consensus 79 ~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 79 IETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444455555543
No 75
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=68.19 E-value=65 Score=38.74 Aligned_cols=59 Identities=14% Similarity=0.223 Sum_probs=37.5
Q ss_pred HHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001390 98 LDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAE 161 (1088)
Q Consensus 98 Le~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~E 161 (1088)
|..+.+.....++.+-+.|.+|.+..+++ +.++..-+++.+..+.++..+.++|..+..
T Consensus 461 l~~fl~~~~~~~~~ilq~d~~l~~~~k~~-----~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~ 519 (592)
T 1f5n_A 461 LQTYLKSKESMTDAILQTDQTLTEKEKEI-----EVERVKAESAQASAKMLHEMQRKNEQMMEQ 519 (592)
T ss_dssp HHHHHHHTHHHHHHHHHHCSSSCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777877788887777777 555555555555555555554455444443
No 76
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=67.84 E-value=82 Score=29.63 Aligned_cols=99 Identities=4% Similarity=0.090 Sum_probs=51.0
Q ss_pred chhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001390 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVD 864 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaE 864 (1088)
++++|.+-+.+--+.++...+..-+..+...+.--.+-|..=...+...-+.++.-+ +.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~ri~~aig~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~---------------------aR 63 (114)
T 2xzr_A 5 EDKIEEILSKIYHIENEIARIKKLIGAIDGRVTRNTQSIEKNSKAIAANTRTLQQHS---------------------AR 63 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHhhhhHHHHhhHHHHHhchHHHHHhHHHHHHHH---------------------HH
Confidence 345566666666666666666666665555554444444433333333333333333 44
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhh
Q 001390 865 LNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVT 904 (1088)
Q Consensus 865 l~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e 904 (1088)
++.++.+|.-=-+|+.....+++++..++-.++.++-+++
T Consensus 64 lnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~k 103 (114)
T 2xzr_A 64 LDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIK 103 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4444444444444555555555555555555555555443
No 77
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=67.58 E-value=83 Score=29.62 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=27.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHH
Q 001390 805 AIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLK 859 (1088)
Q Consensus 805 ~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~ 859 (1088)
+.+++..+..++...+.++..|..++..-...-..+|.....+...+++|...|.
T Consensus 10 lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLF 64 (97)
T 2eqb_B 10 LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLF 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444555555555555555555555555555555555555444
No 78
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=66.18 E-value=83 Score=29.09 Aligned_cols=44 Identities=16% Similarity=0.136 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHH
Q 001390 853 DLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLEL 896 (1088)
Q Consensus 853 ~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eL 896 (1088)
..+.-...++.....+...+..|+..+.+....+.++...+..+
T Consensus 67 ~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 67 TKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555566666666666666666666666665554
No 79
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=65.90 E-value=59 Score=29.68 Aligned_cols=25 Identities=12% Similarity=0.023 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhh
Q 001390 861 ARVDLNEACQKLSSLEVELEDKSNC 885 (1088)
Q Consensus 861 leaEl~qlqeKVsSLE~ELE~er~~ 885 (1088)
++.....+...+..|+..+.+.+..
T Consensus 70 L~~~~e~i~~~i~~le~~~~~~~~~ 94 (107)
T 1fxk_A 70 LQEKLETLQLREKTIERQEERVMKK 94 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444443333333
No 80
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=65.78 E-value=37 Score=30.83 Aligned_cols=9 Identities=33% Similarity=0.582 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 001390 862 RVDLNEACQ 870 (1088)
Q Consensus 862 eaEl~qlqe 870 (1088)
+.++.++.+
T Consensus 47 ~~Elk~l~e 55 (79)
T 3cvf_A 47 RAEVGRAAQ 55 (79)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 81
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=65.52 E-value=25 Score=32.07 Aligned_cols=44 Identities=23% Similarity=0.370 Sum_probs=35.0
Q ss_pred HHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHH
Q 001390 189 DLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIR 232 (1088)
Q Consensus 189 eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr 232 (1088)
.+.++...+.+..-..+.+|...++.|.+|.+++..+.++++-+
T Consensus 28 ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 28 SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777777888999999999999999998888887664
No 82
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=65.48 E-value=45 Score=31.23 Aligned_cols=81 Identities=21% Similarity=0.247 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHH---HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 001390 809 SNSLMSQLQESQKIVSNSQNELDILKKSKEVIE---DQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNC 885 (1088)
Q Consensus 809 LE~lksQLeElE~kLeELksELesLeES~selE---eQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~ 885 (1088)
+..+..++..++.-|..-+.+++.+++.+...+ +++.-+..+.....+.|..-++.-..+..++..|..++....+.
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 445555555665555555555555555555554 33333333334444445555555555555555555555554444
Q ss_pred hHHH
Q 001390 886 CEEL 889 (1088)
Q Consensus 886 lEEl 889 (1088)
...+
T Consensus 84 ~~~L 87 (94)
T 3jsv_C 84 FNKL 87 (94)
T ss_dssp TC--
T ss_pred HHHH
Confidence 4433
No 83
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=65.19 E-value=68 Score=28.93 Aligned_cols=20 Identities=5% Similarity=0.006 Sum_probs=10.0
Q ss_pred hhhhHhhhhHHHHHHHHHHH
Q 001390 788 FINVEAGNKVRQECLVSAID 807 (1088)
Q Consensus 788 LEqLesEK~eLE~rLq~~qe 807 (1088)
++.+++.+..++..+.....
T Consensus 3 l~~l~~~~~sLE~~l~e~e~ 22 (84)
T 1gk4_A 3 VDALKGTNESLERQMREMEE 22 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554443
No 84
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=63.92 E-value=52 Score=29.90 Aligned_cols=21 Identities=10% Similarity=0.116 Sum_probs=7.4
Q ss_pred hhhhhHhhhhHHHHHHHHHHH
Q 001390 787 EFINVEAGNKVRQECLVSAID 807 (1088)
Q Consensus 787 eLEqLesEK~eLE~rLq~~qe 807 (1088)
+++.+++.+..++..+.+...
T Consensus 4 eie~L~~q~~~Le~~l~e~E~ 24 (86)
T 1x8y_A 4 QLSQLQCQLAAKEAKLRDLED 24 (86)
T ss_dssp --------CTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556655555554
No 85
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=63.70 E-value=79 Score=36.94 Aligned_cols=120 Identities=13% Similarity=0.148 Sum_probs=73.9
Q ss_pred chhhh-hhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHH----HHh-hhHHHHH
Q 001390 785 GSEFI-NVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQK----MIN-EDLDTQL 858 (1088)
Q Consensus 785 ~eeLE-qLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~----e~l-e~LesqL 858 (1088)
..+.+ .+...|.+|.+.|..++.....+..-...+-..+..-.++....+..+.++.++|+..- ... .++ ..|
T Consensus 56 L~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi-~~I 134 (491)
T 1m1j_A 56 IDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQV-NRI 134 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 44444 47888888888888888877777777777777777777777776666665555444432 222 233 555
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhhhHH----------HHHHHHHHHHHHHhhhc
Q 001390 859 KVARVDLNEACQKLSSLEVELEDKSNCCEE----------LEATCLELQLQLESVTK 905 (1088)
Q Consensus 859 ~eleaEl~qlqeKVsSLE~ELE~er~~lEE----------l~aKc~eLeeQLEr~e~ 905 (1088)
..++.-+..+..+|..||..+.-....|.. ...-++.+|.||+++..
T Consensus 135 rvLq~~l~~q~skIQRLE~dI~~q~~~Cr~pC~r~~~y~VD~~~Ye~~QKqLeQv~a 191 (491)
T 1m1j_A 135 KALQNSIQEQVVEMKRLEVDIDIKIRACKGSCARSFDYQVDKEGYDNIQKHLTQASS 191 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTBSSCCCCCCCTTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHhhhcHHHHHHHHHHHHHhhc
Confidence 556666666666666666666655555541 12234556666666543
No 86
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=62.23 E-value=1.1e+02 Score=29.30 Aligned_cols=74 Identities=18% Similarity=0.122 Sum_probs=45.3
Q ss_pred hHhhhHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001390 196 QAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRV 269 (1088)
Q Consensus 196 ~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~ 269 (1088)
.+.+.+..||..+..+...+..++.-|+-++..-+-+.-..-.+.-+++.-...+-..+.+.+=||.|+..-..
T Consensus 32 e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~EKe~ 105 (111)
T 2v66_B 32 QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKES 105 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555544444444445556666677777788888999999875443
No 87
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=61.07 E-value=26 Score=34.01 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=0.0
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001390 242 TADESHKQHLESVKKIAKLESECQRLRVL 270 (1088)
Q Consensus 242 saEaA~KQhlEsvKKIakLEaECqRLr~l 270 (1088)
..+.+.....+..+|...-|...+.|+.+
T Consensus 86 ~~~~~q~~~~e~E~kAqa~Eerf~KLKe~ 114 (120)
T 3i00_A 86 DTEKAQRSLSEIERKAQANEQRYSKLKEK 114 (120)
T ss_dssp -----------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556677777777777777766643
No 88
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=59.77 E-value=67 Score=29.33 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 001390 815 QLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLS 873 (1088)
Q Consensus 815 QLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVs 873 (1088)
..+.+-++|.+|+-.+..++.+....|-.|+-.++.+..+..+|..-.+++..++.++.
T Consensus 20 ~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 20 KAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 33344455555555555555555666666666555555566666666666666665543
No 89
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=59.07 E-value=89 Score=27.96 Aligned_cols=52 Identities=17% Similarity=0.161 Sum_probs=20.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001390 830 LDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELED 881 (1088)
Q Consensus 830 LesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~ 881 (1088)
++.++..+..++.++..+...++.-..+=..++.++.++.+.++.==.||..
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~e 60 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTE 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3333333333333333333333333333333444444444444433333333
No 90
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=58.86 E-value=1.4e+02 Score=29.09 Aligned_cols=20 Identities=30% Similarity=0.242 Sum_probs=9.1
Q ss_pred hHHHHHHHHHhHHHHHHHHH
Q 001390 826 SQNELDILKKSKEVIEDQVK 845 (1088)
Q Consensus 826 LksELesLeES~selEeQLk 845 (1088)
|+.+|-..++.+...+.|--
T Consensus 30 Lq~qLTqAQe~l~~~eaQAa 49 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEAQAA 49 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 91
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=58.30 E-value=1.5e+02 Score=29.35 Aligned_cols=16 Identities=13% Similarity=0.246 Sum_probs=5.7
Q ss_pred hHHHHHHHHHhHHHHH
Q 001390 826 SQNELDILKKSKEVIE 841 (1088)
Q Consensus 826 LksELesLeES~selE 841 (1088)
|+.+...|...+..+.
T Consensus 55 L~~~~~~Le~~n~~L~ 70 (155)
T 2oto_A 55 LEKAKQALEDQRKDLE 70 (155)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 92
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=57.16 E-value=1.5e+02 Score=29.23 Aligned_cols=62 Identities=19% Similarity=0.156 Sum_probs=29.9
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 001390 111 RLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLT 177 (1088)
Q Consensus 111 rvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls 177 (1088)
.|+.|..-++.+.+++ +..+.-.+.+-+-+.|-.--...|+.+=.-.+++|.+++||+..+.
T Consensus 12 ~ia~L~~D~~s~~~el-----eEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~Q 73 (167)
T 4gkw_A 12 EVADLKQDTESLQKQL-----EENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQ 73 (167)
T ss_dssp SHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4555555555555555 3333333444433333222233455555555556666666654444
No 93
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=56.92 E-value=38 Score=39.11 Aligned_cols=65 Identities=15% Similarity=0.168 Sum_probs=51.2
Q ss_pred cccchhHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001390 63 CNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVM 142 (1088)
Q Consensus 63 ~~~kd~lvkqh~kvaeeav~GweKaEaE~~slKkqLe~~~qq~v~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~ 142 (1088)
|--+|-|+||+..| ...+..|+..|+.+.+.=....+.|++|...+++-.++. +-..+++.
T Consensus 23 Cgl~d~L~kye~~V-----------~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~--------~~n~~~~~ 83 (411)
T 3ghg_C 23 CGIADFLSTYQTKV-----------DKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSK--------PNMIDAAT 83 (411)
T ss_dssp HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCC--------TTCHHHHH
T ss_pred chHHHHHHHhccch-----------hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCC--------CcchhhHH
Confidence 44578889998876 556899999999999999999999999998888877666 33345666
Q ss_pred HHhH
Q 001390 143 KASM 146 (1088)
Q Consensus 143 kks~ 146 (1088)
++++
T Consensus 84 q~Sk 87 (411)
T 3ghg_C 84 LKSR 87 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6665
No 94
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=56.66 E-value=61 Score=29.46 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHH
Q 001390 814 SQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQK 848 (1088)
Q Consensus 814 sQLeElE~kLeELksELesLeES~selEeQLk~~~ 848 (1088)
.+-.+++.++..|+.+++..+.+-..+..+++..-
T Consensus 20 ~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~ 54 (79)
T 3cvf_A 20 TRNAELEHQLRAMERSLEEARAERERARAEVGRAA 54 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444443
No 95
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=54.50 E-value=70 Score=32.08 Aligned_cols=66 Identities=9% Similarity=0.129 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhcCCC-CcccchhhhhhhhhhHhHHHHHhh
Q 001390 863 VDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTKSGI-PTDELKQDEKQIQTDWEIATASEK 932 (1088)
Q Consensus 863 aEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~~~~-~~~~~~~e~~~~kqe~EIaaAAeK 932 (1088)
..+..+...+...+..+......+..+.+++..|+.++..++.... ...+ -+-++.|.+.+.+|-|
T Consensus 66 ~~~~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseAS----RqgLrRDLeASReAKK 132 (146)
T 2xnx_M 66 KELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDAS----RQSLRRDLDASREAKK 132 (146)
T ss_dssp TTTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC-----------------------
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444455555555555443221 1111 1334555555555544
No 96
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=54.48 E-value=1e+02 Score=35.46 Aligned_cols=35 Identities=6% Similarity=0.078 Sum_probs=18.3
Q ss_pred HHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhc
Q 001390 871 KLSSLEVELEDKSNCCEELEATCLELQLQLESVTK 905 (1088)
Q Consensus 871 KVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~ 905 (1088)
.+...+..+...+..+..+..++..|+.++..+..
T Consensus 99 ~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 99 TILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33444444444444555556666666666555443
No 97
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=54.05 E-value=1.7e+02 Score=33.66 Aligned_cols=29 Identities=17% Similarity=0.082 Sum_probs=12.2
Q ss_pred HhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001390 872 LSSLEVELEDKSNCCEELEATCLELQLQL 900 (1088)
Q Consensus 872 VsSLE~ELE~er~~lEEl~aKc~eLeeQL 900 (1088)
|..|+..+...+..++.+..++.+|+...
T Consensus 107 i~~l~~~~~~~~~~i~~l~~~i~~l~~~~ 135 (409)
T 1m1j_C 107 IQQLTDMHIMNSNKITQLKQKIAQLESHC 135 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 33333333333444444444444444433
No 98
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=51.36 E-value=1.8e+02 Score=34.32 Aligned_cols=68 Identities=16% Similarity=0.089 Sum_probs=30.8
Q ss_pred HhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Q 001390 824 SNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESV 903 (1088)
Q Consensus 824 eELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~ 903 (1088)
+.++.+.+..++.+......++....+| +..|...+.++...+.++..++. -++++.+...+++..
T Consensus 44 ~~i~aeNeaikkrNa~aka~Ye~~l~kY---~~dlakY~~~~AeY~~kl~aYe~-----------~~~~~~k~lae~ek~ 109 (497)
T 3iox_A 44 AALTAENTAIKKRNADAKADYEAKLAKY---QADLAKYQKDLADYPVKLKAYED-----------EQTSIKAALAELEKH 109 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhc
Confidence 3344455555555555444444433333 23333334444444444444443 344455555566654
Q ss_pred hc
Q 001390 904 TK 905 (1088)
Q Consensus 904 e~ 905 (1088)
+.
T Consensus 110 k~ 111 (497)
T 3iox_A 110 KN 111 (497)
T ss_dssp TT
T ss_pred cc
Confidence 44
No 99
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=50.70 E-value=70 Score=30.27 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHH
Q 001390 814 SQLQESQKIVSNSQNELDILKKSKEVIEDQVKL 846 (1088)
Q Consensus 814 sQLeElE~kLeELksELesLeES~selEeQLk~ 846 (1088)
.++..+..+|++|..+...|.+.+..+|.++..
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777777777788888888877765
No 100
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=50.54 E-value=86 Score=29.15 Aligned_cols=24 Identities=8% Similarity=0.023 Sum_probs=11.0
Q ss_pred hhhhhhHhhhhHHHHHHHHHHHhH
Q 001390 786 SEFINVEAGNKVRQECLVSAIDKS 809 (1088)
Q Consensus 786 eeLEqLesEK~eLE~rLq~~qekL 809 (1088)
..+..++..+..++..+.+.....
T Consensus 12 ~~~~~Lq~~~~~LE~~l~e~E~~~ 35 (95)
T 3mov_A 12 NLYFQGQKESRACLERIQELEDLL 35 (95)
T ss_dssp ------CCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666665433
No 101
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=49.89 E-value=1.8e+02 Score=27.72 Aligned_cols=44 Identities=16% Similarity=0.207 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHH
Q 001390 854 LDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQ 897 (1088)
Q Consensus 854 LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLe 897 (1088)
++.....++-.+..+...+..++..+.+.+..+..+...++++.
T Consensus 86 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 86 FEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444455555555555555555555555555555544443
No 102
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=48.72 E-value=29 Score=41.47 Aligned_cols=118 Identities=13% Similarity=0.121 Sum_probs=47.8
Q ss_pred hhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001390 787 EFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLN 866 (1088)
Q Consensus 787 eLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~ 866 (1088)
++++|++.-.+-..+.+.=..++..-+....+++....+|..++..+++....+...|....+....|..++..++.+..
T Consensus 301 e~qqm~~~a~e~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~ 380 (575)
T 2i1j_A 301 DVQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKE 380 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 56677666655555555555556666677778888888888888888888888888888888888888888888887777
Q ss_pred HHHHHHhhHHHHHHHhhhhhH-------HHHHHHHHHHHHHHhhh
Q 001390 867 EACQKLSSLEVELEDKSNCCE-------ELEATCLELQLQLESVT 904 (1088)
Q Consensus 867 qlqeKVsSLE~ELE~er~~lE-------El~aKc~eLeeQLEr~e 904 (1088)
.+..+-..++.+++....... .+.+++.+.+..+.++.
T Consensus 381 ~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~ 425 (575)
T 2i1j_A 381 ELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQ 425 (575)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777666666665544433 23344444444444443
No 103
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=48.04 E-value=13 Score=44.39 Aligned_cols=67 Identities=16% Similarity=0.153 Sum_probs=29.9
Q ss_pred chhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 001390 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMIN 851 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~l 851 (1088)
....+..+.++.+++.+|..++++....+..|.+.+.....|..++..+++.-..++..-....+..
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~ 393 (575)
T 2i1j_A 327 IAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMM 393 (575)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777888888888888888888888888777777777777777666666655544443333
No 104
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=47.60 E-value=1.6e+02 Score=26.68 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=19.0
Q ss_pred HHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001390 866 NEACQKLSSLEVELEDKSNCCEELEATCLELQLQLE 901 (1088)
Q Consensus 866 ~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLE 901 (1088)
..+..+++.++.++......+..+..++.+++.+|.
T Consensus 68 ~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 68 EELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555544
No 105
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=47.46 E-value=19 Score=26.84 Aligned_cols=27 Identities=33% Similarity=0.457 Sum_probs=20.6
Q ss_pred hHHHHHhhcchHHHHHHHhhHHHHHHH
Q 001390 200 DSNALMVRLDSTEKENASLKYEVRVLG 226 (1088)
Q Consensus 200 ei~~Lq~rLE~~EKEn~sLKyEl~vlq 226 (1088)
+|..|++++..+.||++.|+.|+-.+.
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888888888888876553
No 106
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=47.11 E-value=80 Score=28.65 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 001390 150 QSLMILEEKLAETSKRLAKLG 170 (1088)
Q Consensus 150 k~~~eLE~kL~El~k~L~k~~ 170 (1088)
+++..|...+...+.+|+.++
T Consensus 11 KLRrrl~E~~~q~qaEl~sLr 31 (78)
T 3iv1_A 11 KLRWRMKEEMDRAQAELNALK 31 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHH
Confidence 445555555555555554444
No 107
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=46.46 E-value=2e+02 Score=27.29 Aligned_cols=77 Identities=19% Similarity=0.249 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHH
Q 001390 145 SMEFEQSLMILEEKLAETSKR-LAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVR 223 (1088)
Q Consensus 145 s~E~Ek~~~eLE~kL~El~k~-L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~ 223 (1088)
-.+.+..+.+|+.++.+++.+ ..+.+.+ ...++.|+.++..-..++..++..++..+..+..+...+.
T Consensus 24 ~~e~e~~k~eL~~~~~~~~~~~~~k~~eq-----------~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~ 92 (107)
T 2no2_A 24 QVDLEREKKELEDSLERISDQGQRKTQEQ-----------LEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFA 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666665521 1122222 2334444445554444555555555555555555555555
Q ss_pred HHHHHHHHH
Q 001390 224 VLGKELEIR 232 (1088)
Q Consensus 224 vlqkELEIr 232 (1088)
.+++|.+.+
T Consensus 93 ~l~~Ek~~L 101 (107)
T 2no2_A 93 ELEKERDSL 101 (107)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544443
No 108
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=46.35 E-value=3.6e+02 Score=31.89 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhh
Q 001390 152 LMILEEKLAETSKRLAKLGVENTHL 176 (1088)
Q Consensus 152 ~~eLE~kL~El~k~L~k~~aEn~~L 176 (1088)
..+++++|+..+++|++..+.|..+
T Consensus 4 ~a~yq~~la~yq~elarvqkana~a 28 (497)
T 3iox_A 4 EADYQAKLTAYQTELARVQKANADA 28 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999988543
No 109
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=45.91 E-value=92 Score=28.25 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=5.9
Q ss_pred HHHHHHhhHHHHHH
Q 001390 867 EACQKLSSLEVELE 880 (1088)
Q Consensus 867 qlqeKVsSLE~ELE 880 (1088)
.+.+-.-+|+.||.
T Consensus 60 ~LlnvK~~Le~EIa 73 (86)
T 1x8y_A 60 ELLDIKLALDMEIH 73 (86)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHH
Confidence 33343444444443
No 110
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=45.63 E-value=1.8e+02 Score=26.73 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=20.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001390 802 LVSAIDKSNSLMSQLQESQKIVSNSQNELDILKK 835 (1088)
Q Consensus 802 Lq~~qekLE~lksQLeElE~kLeELksELesLeE 835 (1088)
++..++++..--...+.+|++-..|..++..+..
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556666666666666666666666666555543
No 111
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=45.56 E-value=2.1e+02 Score=33.55 Aligned_cols=72 Identities=10% Similarity=0.229 Sum_probs=35.8
Q ss_pred HHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001390 820 QKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQ 899 (1088)
Q Consensus 820 E~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQ 899 (1088)
..-+..+..-+..-.......+.-+.+.. ++|+.++..++..++.+.+.|..|+ ..++.+..+|+.|+.-
T Consensus 85 ~~y~~~~~~~lk~~~~q~~dndn~~~e~S---~eLe~ri~yIK~kVd~qi~~IrvLq-------~~l~~q~skIQRLE~d 154 (491)
T 1m1j_A 85 NRVIVETINILKPGLEGAQQLDENYGHVS---TELRRRIVTLKQRVATQVNRIKALQ-------NSIQEQVVEMKRLEVD 154 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccchhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433 4445555656666655555555554 4445555566666655
Q ss_pred HH
Q 001390 900 LE 901 (1088)
Q Consensus 900 LE 901 (1088)
|.
T Consensus 155 I~ 156 (491)
T 1m1j_A 155 ID 156 (491)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 112
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=44.49 E-value=1e+02 Score=29.91 Aligned_cols=19 Identities=5% Similarity=-0.230 Sum_probs=11.4
Q ss_pred hhhhhHhhhhHHHHHHHHH
Q 001390 787 EFINVEAGNKVRQECLVSA 805 (1088)
Q Consensus 787 eLEqLesEK~eLE~rLq~~ 805 (1088)
-++.|..++..+...++.+
T Consensus 16 ~Ie~Lkreie~lk~ele~l 34 (120)
T 3i00_A 16 LIERLYREISGLKAQLENM 34 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666544
No 113
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=43.81 E-value=1.4e+02 Score=26.02 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhhHHHHH
Q 001390 863 VDLNEACQKLSSLEVEL 879 (1088)
Q Consensus 863 aEl~qlqeKVsSLE~EL 879 (1088)
.|+.++.-.|.+|+.||
T Consensus 56 ~Ei~elrr~iq~L~~el 72 (77)
T 3trt_A 56 QESTEYRRQVQSLTMEV 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333344444333
No 114
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=43.76 E-value=1.5e+02 Score=34.76 Aligned_cols=44 Identities=5% Similarity=-0.097 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHH
Q 001390 797 VRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVI 840 (1088)
Q Consensus 797 eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~sel 840 (1088)
.+...|+.++..++.+.+...++++.+..|+.-+...+.+...-
T Consensus 92 ~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n 135 (461)
T 3ghg_B 92 PIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDN 135 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcc
Confidence 35555556666666666666666666666666666555555443
No 115
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=43.75 E-value=1e+02 Score=27.95 Aligned_cols=48 Identities=21% Similarity=0.140 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 001390 855 DTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLES 902 (1088)
Q Consensus 855 esqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr 902 (1088)
+..-+.+-+.+.++.+..+.|..|+...+.....+..|+.+++++|.+
T Consensus 29 nvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 29 NIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444556666777777777777777777777777888888877754
No 116
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=42.93 E-value=1.9e+02 Score=25.97 Aligned_cols=25 Identities=12% Similarity=0.012 Sum_probs=16.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHh
Q 001390 801 CLVSAIDKSNSLMSQLQESQKIVSN 825 (1088)
Q Consensus 801 rLq~~qekLE~lksQLeElE~kLeE 825 (1088)
.|+.++..+..+...+.+++..|..
T Consensus 3 ~L~~f~~~l~el~~WL~e~e~~l~~ 27 (118)
T 3uul_A 3 DLDSYQIALEEVLTWLLSAEDTFQE 27 (118)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3566677777777777777666654
No 117
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=42.81 E-value=1.4e+02 Score=34.96 Aligned_cols=57 Identities=7% Similarity=0.043 Sum_probs=27.3
Q ss_pred hHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHH----HHHhHHHHHHHHHHH
Q 001390 791 VEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDI----LKKSKEVIEDQVKLQ 847 (1088)
Q Consensus 791 LesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELes----LeES~selEeQLk~~ 847 (1088)
+...+.+|+..|..+.....++..-+..+...+..-+.+... .+++..++|++...+
T Consensus 93 V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~~mle~~~~~~ 153 (461)
T 3ghg_B 93 IRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQLYI 153 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHH
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHHHHHHHH
Confidence 444445555555555444444444444444444444444443 334445555544443
No 118
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=42.48 E-value=88 Score=28.89 Aligned_cols=89 Identities=17% Similarity=0.207 Sum_probs=61.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhcCCCCcccchhh--hhhhhhhHhHHH
Q 001390 851 NEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVTKSGIPTDELKQD--EKQIQTDWEIAT 928 (1088)
Q Consensus 851 le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e~~~~~~~~~~~e--~~~~kqe~EIaa 928 (1088)
++..+.+|..+-.++.....++.++..+ .++..+.++...+.+..+=|.+|.-+ +..- +...+ +.
T Consensus 3 F~~YE~df~~~~~~i~~~l~~~~~~~ge--~Rk~~i~~ie~~ldEA~ell~qMelE------~~~~~~p~~~R-----~~ 69 (97)
T 3onj_A 3 LISYESDFKTTLEQAKASLAEAPSQPLS--QRNTTLKHVEQQQDELFDLLDQMDVE------VNNSIGDASER-----AT 69 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGSCHH--HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHCCCHHHH-----HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChH--HHHHHHHHHHHHHHHHHHHHHHHHHH------HHhCCCCHHHH-----HH
Confidence 4455677777777777777777766553 56677777777777777777777652 1111 11112 35
Q ss_pred HHhhHHHHHHHHHH-HHHHHhhccC
Q 001390 929 ASEKLAECQETILN-LGKQLKALAS 952 (1088)
Q Consensus 929 AAeKLAECQETI~~-LGKQLKaLa~ 952 (1088)
--.||-+++..+.+ |-+.||.|..
T Consensus 70 ~~~klr~Yk~dl~~~lk~~lk~l~d 94 (97)
T 3onj_A 70 YKAKLREWKKTIQSDIKRPLQSLVD 94 (97)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 56899999999999 9999998854
No 119
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=40.53 E-value=1.1e+02 Score=31.99 Aligned_cols=10 Identities=20% Similarity=0.425 Sum_probs=3.6
Q ss_pred HHhhHHHHHH
Q 001390 823 VSNSQNELDI 832 (1088)
Q Consensus 823 LeELksELes 832 (1088)
++-|+.++++
T Consensus 43 i~~L~~ql~s 52 (190)
T 4emc_A 43 IKQLQKQIDS 52 (190)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 120
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=40.20 E-value=55 Score=29.54 Aligned_cols=34 Identities=21% Similarity=0.185 Sum_probs=28.2
Q ss_pred hHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHH
Q 001390 200 DSNALMVRLDSTEKENASLKYEVRVLGKELEIRN 233 (1088)
Q Consensus 200 ei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~ 233 (1088)
....++.+.+.++++|..|+.+|..+.+|+..+.
T Consensus 37 r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446678899999999999999999988887765
No 121
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=39.88 E-value=57 Score=30.03 Aligned_cols=28 Identities=25% Similarity=0.245 Sum_probs=18.3
Q ss_pred HHHHhhcchHHHHHHHhhHHHHHHHHHH
Q 001390 202 NALMVRLDSTEKENASLKYEVRVLGKEL 229 (1088)
Q Consensus 202 ~~Lq~rLE~~EKEn~sLKyEl~vlqkEL 229 (1088)
..++.+.+.++++|..|+.+|..+.+|+
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~ 66 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSREL 66 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777778888888877655444443
No 122
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=39.10 E-value=83 Score=31.67 Aligned_cols=100 Identities=17% Similarity=0.090 Sum_probs=59.5
Q ss_pred HHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 001390 201 SNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAA 280 (1088)
Q Consensus 201 i~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~rk~lpgpaa 280 (1088)
+.+|..||+.|..-+.+-+.--..++.|-.-.-+|-.-....++.+-..+-...+++.-++..+.+....+----||-.-
T Consensus 22 l~qL~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~ 101 (158)
T 3tul_A 22 LSQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPADPG 101 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 55677778877766655444333344444444444445555556666666666677777777777777777777888778
Q ss_pred HhhhhHHHHhhcCCChhhhh
Q 001390 281 LAKMKNEVEILGRESPETRR 300 (1088)
Q Consensus 281 ~a~mk~eve~~~~~~~~~r~ 300 (1088)
-++.+-+++.++.|-...++
T Consensus 102 Yak~~a~~~q~~~d~~~~~~ 121 (158)
T 3tul_A 102 YAQAEAAVEQAGKEATEAKE 121 (158)
T ss_dssp -CHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 88899999988877544444
No 123
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=38.97 E-value=2.2e+02 Score=29.32 Aligned_cols=69 Identities=20% Similarity=0.189 Sum_probs=35.3
Q ss_pred HhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhH
Q 001390 807 DKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSL 875 (1088)
Q Consensus 807 ekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSL 875 (1088)
.+|.....|-+-.++.-.|+...++++-++-+.+..-++.....|..++..+..++-.+++++.|++.|
T Consensus 75 nrL~~wlsQ~em~~qks~EFSD~~qTaL~eAQ~AtD~y~~Ainny~~Ads~~~~lekKvn~aq~kLs~L 143 (201)
T 3u0c_A 75 NKITAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRLSEL 143 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334444455555556666664444444444444444444544455555555555555555555544444
No 124
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=38.72 E-value=60 Score=29.09 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhhhH
Q 001390 863 VDLNEACQKLSSLEVELEDKSNCCE 887 (1088)
Q Consensus 863 aEl~qlqeKVsSLE~ELE~er~~lE 887 (1088)
.++.+....|..|+.+|..+...+.
T Consensus 33 eELr~kd~~I~eLEk~L~ekd~eI~ 57 (72)
T 3nmd_A 33 EELRQRDALIDELELELDQKDELIQ 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443
No 125
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=37.85 E-value=3.5e+02 Score=28.45 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=20.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHH
Q 001390 804 SAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQV 844 (1088)
Q Consensus 804 ~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQL 844 (1088)
.++.+...+..+...++..+..|..+++.+-..+.+.|.+|
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L 176 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDL 176 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555555555555555555443
No 126
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=37.31 E-value=1.4e+02 Score=31.20 Aligned_cols=44 Identities=18% Similarity=0.123 Sum_probs=15.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHH
Q 001390 801 CLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQV 844 (1088)
Q Consensus 801 rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQL 844 (1088)
++.....-+..+..+...+.++|.....++..+++.++.++.+.
T Consensus 14 ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 14 QIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333333333333333333444444444444444444444433
No 127
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=36.78 E-value=66 Score=26.02 Aligned_cols=34 Identities=35% Similarity=0.382 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 001390 146 MEFEQSLMILEEKLAETSKRLAKLGVENTHLTKA 179 (1088)
Q Consensus 146 ~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~ 179 (1088)
.++|.-..+|+.+.++|+.++..+..||.-|...
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 5677777799999999999999999998766633
No 128
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=36.60 E-value=74 Score=28.61 Aligned_cols=40 Identities=5% Similarity=-0.029 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 001390 814 SQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINED 853 (1088)
Q Consensus 814 sQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~ 853 (1088)
.++.-.+..|++|+..+...+..+..+..++..+..++..
T Consensus 21 ~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 21 TRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555555555544444433
No 129
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=36.56 E-value=57 Score=32.07 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001390 854 LDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLE 901 (1088)
Q Consensus 854 LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLE 901 (1088)
++.....++-.+..+...+..++..+.+.+..+..+...+++++.++.
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~~ 143 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQS 143 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555555555555555555554433
No 130
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=35.76 E-value=1e+02 Score=35.67 Aligned_cols=34 Identities=15% Similarity=0.120 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHH
Q 001390 798 RQECLVSAIDKSNSLMSQLQESQKIVSNSQNELD 831 (1088)
Q Consensus 798 LE~rLq~~qekLE~lksQLeElE~kLeELksELe 831 (1088)
+...|+.++..++.+.+...++++.+.-|+.-..
T Consensus 36 V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~ 69 (411)
T 3ghg_C 36 VDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYN 69 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhc
Confidence 3444555555555555555555555555554433
No 131
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=35.64 E-value=2.7e+02 Score=27.90 Aligned_cols=26 Identities=4% Similarity=-0.206 Sum_probs=16.3
Q ss_pred chhhhhhHhhhhHHHHHHHHHHHhHH
Q 001390 785 GSEFINVEAGNKVRQECLVSAIDKSN 810 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qekLE 810 (1088)
.++.+.+...+++.-..|+++...++
T Consensus 67 k~~~e~l~~~veeA~~~L~eYn~rL~ 92 (152)
T 4fla_A 67 KEAAERLSKTVDEACLLLAEYNGRLA 92 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666665444
No 132
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=35.30 E-value=40 Score=28.29 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=20.1
Q ss_pred HhhHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 001390 872 LSSLEVELEDKSNCCEELEATCLELQLQLES 902 (1088)
Q Consensus 872 VsSLE~ELE~er~~lEEl~aKc~eLeeQLEr 902 (1088)
++.|..|+...+..+.++..++.++..+|.+
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5556666666666666666666666666654
No 133
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=34.85 E-value=72 Score=36.48 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=13.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHH
Q 001390 816 LQESQKIVSNSQNELDILKKSKEVIEDQVKLQ 847 (1088)
Q Consensus 816 LeElE~kLeELksELesLeES~selEeQLk~~ 847 (1088)
+.+++.++.+|+.+...+++.+..++.+++.+
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 36 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKEL 36 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443333
No 134
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=34.77 E-value=2e+02 Score=27.03 Aligned_cols=67 Identities=24% Similarity=0.294 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHH
Q 001390 153 MILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLG 226 (1088)
Q Consensus 153 ~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlq 226 (1088)
-=|+.+|..++.-|...+++.+.-..++. .+..+|..++++.- ..+.+.+.++.|+..|+..|+-+.
T Consensus 21 ~lLq~qLT~Aq~~l~~~eaQAaTCNqTV~---tL~~SL~kekaq~q----~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 21 HLLQRQLTRTQDSLLQAETQANSCNLTVV---TLQESLEKKVSQAL----EQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888777777766554444443 56666666666532 224456666666666666555544
No 135
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=34.68 E-value=1.3e+02 Score=27.50 Aligned_cols=16 Identities=0% Similarity=-0.278 Sum_probs=5.8
Q ss_pred hHhhhhHHHHHHHHHH
Q 001390 791 VEAGNKVRQECLVSAI 806 (1088)
Q Consensus 791 LesEK~eLE~rLq~~q 806 (1088)
|+-.+.+++++...+.
T Consensus 31 Lr~kv~elEnErlQyE 46 (81)
T 3qh9_A 31 LKIKVEELENERNQYE 46 (81)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 136
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=34.60 E-value=1.1e+02 Score=27.50 Aligned_cols=47 Identities=13% Similarity=0.013 Sum_probs=19.0
Q ss_pred hHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhH
Q 001390 791 VEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSK 837 (1088)
Q Consensus 791 LesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~ 837 (1088)
++..+.+|+.++.--.+-++.+..-+-.-...|..|+.++..+.+.+
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333333333333333333333333
No 137
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=34.45 E-value=1.2e+02 Score=27.35 Aligned_cols=25 Identities=8% Similarity=-0.108 Sum_probs=12.8
Q ss_pred chhhhhhHhhhhHHHHHHHHHHHhH
Q 001390 785 GSEFINVEAGNKVRQECLVSAIDKS 809 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qekL 809 (1088)
..++++|...|..++.++..++.++
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555444
No 138
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=34.24 E-value=2.7e+02 Score=25.36 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=11.1
Q ss_pred HHHHHHhhHHHHHHHHHhHHHHHHHHHH
Q 001390 819 SQKIVSNSQNELDILKKSKEVIEDQVKL 846 (1088)
Q Consensus 819 lE~kLeELksELesLeES~selEeQLk~ 846 (1088)
+..+|..|+.++..|...++...-++..
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~q 52 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQ 52 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3333444444444444444433333333
No 139
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=33.89 E-value=1.3e+02 Score=32.69 Aligned_cols=22 Identities=9% Similarity=0.015 Sum_probs=11.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhhh
Q 001390 883 SNCCEELEATCLELQLQLESVT 904 (1088)
Q Consensus 883 r~~lEEl~aKc~eLeeQLEr~e 904 (1088)
+..++.++..+..++.+|....
T Consensus 135 ~~~l~~~~~~l~~a~~~l~~~~ 156 (369)
T 4dk0_A 135 QENIKQAEIEVNTAETNLGYTK 156 (369)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHHHHHHHHHHHhhcCE
Confidence 3344444555555556665433
No 140
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=33.77 E-value=2.6e+02 Score=24.92 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=11.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q 001390 802 LVSAIDKSNSLMSQLQESQKIVS 824 (1088)
Q Consensus 802 Lq~~qekLE~lksQLeElE~kLe 824 (1088)
|+.+...+..+...+.+++..|.
T Consensus 4 L~~F~~~l~el~~WL~~~e~~l~ 26 (119)
T 3uun_A 4 LDRYQTALEEVLSWLLSAEDTLQ 26 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555554443
No 141
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=33.72 E-value=4.5e+02 Score=27.85 Aligned_cols=73 Identities=14% Similarity=0.060 Sum_probs=48.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 001390 830 LDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLES 902 (1088)
Q Consensus 830 LesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr 902 (1088)
|...+..+..++..+..++..+..-...+..+++.+.+..++|..|+-.+..........+.+|-.++.-.-+
T Consensus 79 L~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~DyVS 151 (242)
T 3c9i_A 79 LADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQADYVS 151 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCB
T ss_pred eecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhhhhhh
Confidence 5556666666666666666666666667777777777777777777777666666666666666666655443
No 142
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=33.26 E-value=3.6e+02 Score=30.57 Aligned_cols=78 Identities=13% Similarity=0.222 Sum_probs=51.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH----------------HhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHH
Q 001390 828 NELDILKKSKEVIEDQVKLQKM----------------INEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEA 891 (1088)
Q Consensus 828 sELesLeES~selEeQLk~~~e----------------~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~a 891 (1088)
+-+++..+.+..+++|+..++. ....+..-...++..+..+.+....|+++|......+.++.+
T Consensus 161 ~a~~af~~~~~~f~~q~~~~e~~~~~~~~~~~~~~~~~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (373)
T 3hhm_B 161 TAIEAFNETIKIFEEQCQTQERYSKEYIEKFKREGNEKEIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDK 240 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666665544432 112344445556777777888888888888888888888888
Q ss_pred HHHHHHHHHHhhhc
Q 001390 892 TCLELQLQLESVTK 905 (1088)
Q Consensus 892 Kc~eLeeQLEr~e~ 905 (1088)
++..++=+|-.+.+
T Consensus 241 ~~~~lkp~l~ql~k 254 (373)
T 3hhm_B 241 RMNSIKPDLIQLRK 254 (373)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhhccChHHHHHHH
Confidence 88887776655444
No 143
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=33.11 E-value=2.6e+02 Score=26.14 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhhHHHHHH
Q 001390 862 RVDLNEACQKLSSLEVELEDKSNCCEELEAT 892 (1088)
Q Consensus 862 eaEl~qlqeKVsSLE~ELE~er~~lEEl~aK 892 (1088)
..++++.-.+++.|+.++.+....+.++..+
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q~~L~e~e~~ 91 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYEAWLAEAESR 91 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5677788888999999998888888877543
No 144
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=32.83 E-value=91 Score=35.62 Aligned_cols=7 Identities=43% Similarity=0.695 Sum_probs=4.1
Q ss_pred hcccccc
Q 001390 957 ALFDKVI 963 (1088)
Q Consensus 957 ~~~d~~~ 963 (1088)
+-||.|+
T Consensus 110 F~FD~VF 116 (403)
T 4etp_A 110 FKFDKIF 116 (403)
T ss_dssp EEESEEE
T ss_pred EEcCEEE
Confidence 4566665
No 145
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=32.76 E-value=1.3e+02 Score=29.44 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=20.1
Q ss_pred HHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhh
Q 001390 867 EACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVT 904 (1088)
Q Consensus 867 qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e 904 (1088)
-+..|++.|+..++.....+..+..++..++..|..+.
T Consensus 102 ~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~ 139 (151)
T 2zdi_C 102 FLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQ 139 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555443
No 146
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=32.68 E-value=56 Score=28.08 Aligned_cols=34 Identities=29% Similarity=0.344 Sum_probs=23.9
Q ss_pred hHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHH
Q 001390 200 DSNALMVRLDSTEKENASLKYEVRVLGKELEIRN 233 (1088)
Q Consensus 200 ei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~ 233 (1088)
.+..+..+.+.++.+|..|+.+|..++.|+..+.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777788888888877777777766554
No 147
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=32.45 E-value=3.3e+02 Score=25.80 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=26.6
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Q 001390 865 LNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESV 903 (1088)
Q Consensus 865 l~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~ 903 (1088)
..-+..|++.|+..++.....+..+..++..++.+|+.+
T Consensus 90 ~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 90 MESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555677777777777777777777777777777654
No 148
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=31.90 E-value=2.2e+02 Score=25.85 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhHHHHH
Q 001390 812 LMSQLQESQKIVSNSQNELDILKKSKEVIE 841 (1088)
Q Consensus 812 lksQLeElE~kLeELksELesLeES~selE 841 (1088)
+..++..+..++..|.-+++.+...+..+.
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~ 54 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVV 54 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 149
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=31.70 E-value=2.2e+02 Score=27.11 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHH
Q 001390 812 LMSQLQESQKIVSNSQNELDILKKSKEVIEDQVK 845 (1088)
Q Consensus 812 lksQLeElE~kLeELksELesLeES~selEeQLk 845 (1088)
++..+++++.++.....||..+...+..++.++.
T Consensus 33 tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E 66 (107)
T 2k48_A 33 TMSTLQELQENITAHEQQLVTARQKLKDAEKAVE 66 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555555566666666666655555555544
No 150
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=31.22 E-value=76 Score=25.41 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=19.2
Q ss_pred hHHHHHhhcchHHHHHHHhhHHHHHH
Q 001390 200 DSNALMVRLDSTEKENASLKYEVRVL 225 (1088)
Q Consensus 200 ei~~Lq~rLE~~EKEn~sLKyEl~vl 225 (1088)
++..+..+|+.+||+++.|+..++.+
T Consensus 21 elaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777788888888888777653
No 151
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=30.65 E-value=75 Score=25.74 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=24.7
Q ss_pred HHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 001390 867 EACQKLSSLEVELEDKSNCCEELEATCLELQL 898 (1088)
Q Consensus 867 qlqeKVsSLE~ELE~er~~lEEl~aKc~eLee 898 (1088)
.+.+++..+..|+.+.+..+.++..+..+|++
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888888888877777777765
No 152
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=29.93 E-value=1.7e+02 Score=26.34 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=38.3
Q ss_pred hHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001390 107 TGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLG 170 (1088)
Q Consensus 107 ~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~ 170 (1088)
.+|++|.+|++.|.-+.-.+ +.-+.||++.+..|..+|..++..+....
T Consensus 4 dlEEKv~~LE~sld~LQTrf---------------ARLLaEy~ssQ~KLKqRit~LE~~~~~~~ 52 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRF---------------ARILAEYESMQQKLKQRLTKVEKFLKPLI 52 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 47888888888887666544 44478999999999999999988876544
No 153
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=29.18 E-value=1.8e+02 Score=31.32 Aligned_cols=12 Identities=25% Similarity=0.216 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 001390 890 EATCLELQLQLE 901 (1088)
Q Consensus 890 ~aKc~eLeeQLE 901 (1088)
.+++..++.+|+
T Consensus 134 ~a~l~~a~a~l~ 145 (341)
T 3fpp_A 134 DAQIKRNQASLD 145 (341)
T ss_dssp HHHHHHTHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 333344444444
No 154
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=29.03 E-value=3.6e+02 Score=25.13 Aligned_cols=17 Identities=35% Similarity=0.263 Sum_probs=8.4
Q ss_pred hhhHhHHHHHhhHHHHH
Q 001390 921 QTDWEIATASEKLAECQ 937 (1088)
Q Consensus 921 kqe~EIaaAAeKLAECQ 937 (1088)
++|++=|----||||.+
T Consensus 78 KtEKDkAiLELkLaE~~ 94 (101)
T 1d7m_A 78 KTEKDRAILELKLAEAI 94 (101)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHhh
Confidence 44444444445566654
No 155
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=29.00 E-value=3.1e+02 Score=24.38 Aligned_cols=22 Identities=18% Similarity=0.040 Sum_probs=11.1
Q ss_pred hhhhHhhhhHHHHHHHHHHHhH
Q 001390 788 FINVEAGNKVRQECLVSAIDKS 809 (1088)
Q Consensus 788 LEqLesEK~eLE~rLq~~qekL 809 (1088)
+.++......+..=|......+
T Consensus 4 L~~F~~~l~el~~WL~~~e~~l 25 (119)
T 3uun_A 4 LDRYQTALEEVLSWLLSAEDTL 25 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555444433
No 156
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=28.94 E-value=72 Score=27.00 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=26.6
Q ss_pred hHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHH
Q 001390 200 DSNALMVRLDSTEKENASLKYEVRVLGKELEIRNE 234 (1088)
Q Consensus 200 ei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~e 234 (1088)
.+..|+.+.+.++.+|..|+.+|..+..|+..+..
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888888888888887766543
No 157
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=28.82 E-value=2.8e+02 Score=23.84 Aligned_cols=55 Identities=24% Similarity=0.225 Sum_probs=33.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001390 216 ASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVL 270 (1088)
Q Consensus 216 ~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l 270 (1088)
+.|..-+..++.-+..++.+-+-..-.+++-..|+.....+|..||....++..+
T Consensus 9 ~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~~~ 63 (65)
T 3m0d_C 9 AELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQQT 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444555555555555666567777788888898888887643
No 158
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=28.43 E-value=1.8e+02 Score=31.37 Aligned_cols=51 Identities=4% Similarity=-0.038 Sum_probs=21.4
Q ss_pred chhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001390 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKK 835 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeE 835 (1088)
....+.+...+..+.-+..-|..+|.++...++.+...-.-+-..|+.+++
T Consensus 155 kk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEq 205 (242)
T 3uux_B 155 KSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQ 205 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444444444444443333333333333333333
No 159
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=28.29 E-value=1.8e+02 Score=23.88 Aligned_cols=44 Identities=16% Similarity=0.329 Sum_probs=31.8
Q ss_pred hHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001390 107 TGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKR 165 (1088)
Q Consensus 107 ~lEErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~ 165 (1088)
.+||+|.+|++.|.-+.-.+ +.-..||++.+..|..+|..++..
T Consensus 2 dlEekv~~Le~~ld~LqTr~---------------ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRF---------------ARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46888888888877665544 334678888888888888877653
No 160
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=27.81 E-value=1.3e+02 Score=27.94 Aligned_cols=27 Identities=7% Similarity=0.215 Sum_probs=17.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001390 875 LEVELEDKSNCCEELEATCLELQLQLE 901 (1088)
Q Consensus 875 LE~ELE~er~~lEEl~aKc~eLeeQLE 901 (1088)
-..|+..+++...++..++..++.++.
T Consensus 66 ~~~EI~~Rk~~v~~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 66 ENEDVSGREAQVKNIKQQLDALKLRFD 92 (95)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566666677777777666666654
No 161
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=27.65 E-value=4e+02 Score=25.20 Aligned_cols=23 Identities=4% Similarity=0.023 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHH
Q 001390 810 NSLMSQLQESQKIVSNSQNELDI 832 (1088)
Q Consensus 810 E~lksQLeElE~kLeELksELes 832 (1088)
...+.-..+++....+|..++..
T Consensus 18 ~~~~q~~~e~e~~k~eL~~~~~~ 40 (107)
T 2no2_A 18 SMARQAQVDLEREKKELEDSLER 40 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 162
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=27.25 E-value=3.8e+02 Score=24.92 Aligned_cols=91 Identities=27% Similarity=0.320 Sum_probs=57.6
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhh
Q 001390 117 AALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQ 196 (1088)
Q Consensus 117 ~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~ 196 (1088)
..|-.+...| +.|...++-+.+...+++++-..++.+-++-++.+....+. +. .++..|..++-
T Consensus 4 n~La~le~sL-----e~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~ak---id-------d~Lk~l~~Ekl- 67 (101)
T 1d7m_A 4 NRLAGLENSL-----ESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAK---LD-------ETLKNLELEKL- 67 (101)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-------HHHHHHHHHHH-
T ss_pred HHHHHHHHHh-----hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-------HHHHcccHHHH-
Confidence 3444455556 67777777788878888888888877777777777666665 33 22333332221
Q ss_pred HhhhHHHHHhhcchHHHHHHHhhHHHHHHH
Q 001390 197 AEADSNALMVRLDSTEKENASLKYEVRVLG 226 (1088)
Q Consensus 197 ~eaei~~Lq~rLE~~EKEn~sLKyEl~vlq 226 (1088)
+ . =+|..||.-+||.-+-|...+..+.
T Consensus 68 A--k-ldLE~RLsKtEKDkAiLELkLaE~~ 94 (101)
T 1d7m_A 68 A--R-MELEARLAKTEKDRAILELKLAEAI 94 (101)
T ss_dssp H--H-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H--H-HHHHHHHhhhhhHHHHHHHHHHHhh
Confidence 1 1 1356788888888887776655444
No 163
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=26.95 E-value=7.3e+02 Score=28.06 Aligned_cols=8 Identities=25% Similarity=-0.072 Sum_probs=0.0
Q ss_pred cceEEEee
Q 001390 1050 DKLLAIVP 1057 (1088)
Q Consensus 1050 ~~~lAiVP 1057 (1088)
|.++-|.+
T Consensus 346 v~H~~I~~ 353 (373)
T 3hhm_B 346 VKHCVINK 353 (373)
T ss_dssp --------
T ss_pred EEEEEEEE
Confidence 34444443
No 164
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=26.55 E-value=3.7e+02 Score=24.89 Aligned_cols=69 Identities=12% Similarity=0.099 Sum_probs=50.1
Q ss_pred chhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhH
Q 001390 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDL 854 (1088)
Q Consensus 785 ~eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~L 854 (1088)
.+++..++...-.+.|+.-...=... -..+..++|.+...|..+++.+..++..+..++..+...|+.|
T Consensus 20 ~eev~~lKq~RRtlKNRgyAq~CR~K-r~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 20 KDEVIRLKQKRRTLKNRGYAQSCRYK-RVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67788888888888887753332222 2356678888888888888888888888888877777777654
No 165
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=26.42 E-value=5e+02 Score=25.98 Aligned_cols=150 Identities=8% Similarity=0.053 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhccccccchhhHHHHhhccCcccccccchhhhccccccccccCCCCCCCCCCCCCcccccC
Q 001390 688 ADFNKFANDLSIALEWIMNHCFSLQDVSSMKDEIKKHFDWDEVRSESEAEVGMVYQFTEADGLHLPRGQSSCLPTFAVAN 767 (1088)
Q Consensus 688 ~~l~~f~~el~~~L~wi~n~~~s~~d~s~~~d~i~~~f~~~~s~s~~e~e~~~~~~~~~~dk~~l~~~~~~~~~~~~~~~ 767 (1088)
..|-.|..++...+.||-. +..+....|+.......+.-
T Consensus 1 ~~L~~f~~~~~~l~~Wl~~-----------ke~~l~~~~~g~dl~~v~~l------------------------------ 39 (218)
T 3edu_A 1 GSLFQLKRETDDLEQWISE-----------KELVASSPEMGQDFDHVTLL------------------------------ 39 (218)
T ss_dssp CCHHHHHHHHHHHHHHHHH-----------HHHHHTCCCCCSSHHHHHHH------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHH-----------HHHHHcccccCCCHHHHHHH------------------------------
Q ss_pred CCccccCCCCCCCCCCCchhhhhhHhhhhH-HHHHHHHHHH-----------hHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001390 768 GHYFSHKKELPSNESEPGSEFINVEAGNKV-RQECLVSAID-----------KSNSLMSQLQESQKIVSNSQNELDILKK 835 (1088)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~eeLEqLesEK~e-LE~rLq~~qe-----------kLE~lksQLeElE~kLeELksELesLeE 835 (1088)
..+++.++.++.. -+.++..+.. ....++.++..+......|......-..
T Consensus 40 -----------------~~k~~~f~~el~~~~~~~v~~v~~~~~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~R~~ 102 (218)
T 3edu_A 40 -----------------RDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQ 102 (218)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-----------HHHHHHHhhHHHHHHHhhhhhHHHHHHHHHH
Q 001390 836 SKEVIEDQVKLQKMINEDLDTQLKVARVDL-----------NEACQKLSSLEVELEDKSNCCEELEATCLEL 896 (1088)
Q Consensus 836 S~selEeQLk~~~e~le~LesqL~eleaEl-----------~qlqeKVsSLE~ELE~er~~lEEl~aKc~eL 896 (1088)
.+.... ++..--....++..-+.+.+..+ ..++.+...|+.+|......+..+......|
T Consensus 103 ~L~~a~-~~~~F~~~~~e~~~Wl~ek~~~l~~~~g~dl~~v~~l~~~h~~~e~dL~~~~~~v~~l~~~a~~L 173 (218)
T 3edu_A 103 LLAASY-DLHRYFYTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRL 173 (218)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHCCC-------------CCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHhhCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 166
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=26.15 E-value=2.5e+02 Score=30.44 Aligned_cols=24 Identities=0% Similarity=0.115 Sum_probs=12.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhc
Q 001390 882 KSNCCEELEATCLELQLQLESVTK 905 (1088)
Q Consensus 882 er~~lEEl~aKc~eLeeQLEr~e~ 905 (1088)
.+..++.+.+++..++.+|.....
T Consensus 127 a~a~~~~~~~~l~~~~~~l~~a~~ 150 (369)
T 4dk0_A 127 AKAEMDVVQENIKQAEIEVNTAET 150 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666666655555443
No 167
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=26.06 E-value=3.1e+02 Score=25.42 Aligned_cols=90 Identities=16% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhhH-HHHHHHhhhhhHHHHHHHHHHHHHHHhhhcCCCCcccchhhhhhhhhhH
Q 001390 846 LQKMINEDLDTQLKVARVDLNEACQKLSSL-EVELEDKSNCCEELEATCLELQLQLESVTKSGIPTDELKQDEKQIQTDW 924 (1088)
Q Consensus 846 ~~~e~le~LesqL~eleaEl~qlqeKVsSL-E~ELE~er~~lEEl~aKc~eLeeQLEr~e~~~~~~~~~~~e~~~~kqe~ 924 (1088)
.|.+.++..+.+|..+-.++.....++..+ .. +.++..+.+++..+.+.++=|++|. ..+..-+...+.
T Consensus 12 ~mSelFe~YE~df~~l~~~i~~kl~~i~~~~~~--e~rk~~i~~ie~~ldEA~eLl~qMe------lE~r~~p~s~R~-- 81 (102)
T 2qyw_A 12 ASSEHFEKLHEIFRGLLEDLQGVPERLLGTAGT--EEKKKLVRDFDEKQQEANETLAEME------EELRYAPLTFRN-- 81 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCS--HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHTSCHHHHH--
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc--HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhCCHHHHH--
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHh
Q 001390 925 EIATASEKLAECQETILNLGKQLK 948 (1088)
Q Consensus 925 EIaaAAeKLAECQETI~~LGKQLK 948 (1088)
..-.||-+++..+.+|-+.||
T Consensus 82 ---~~~~klr~Yk~dL~~lk~elk 102 (102)
T 2qyw_A 82 ---PMMSKLRNYRKDLAKLHREVR 102 (102)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHHHHHHhhcC
No 168
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=25.89 E-value=6.4e+02 Score=27.05 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=19.7
Q ss_pred hhhHHHHHHHHHHHhhhhcCchhHH
Q 001390 667 SELSDILQQFVHACYGVLNKEADFN 691 (1088)
Q Consensus 667 sel~~~Le~f~~~c~~~L~gk~~l~ 691 (1088)
++++.+|++++++-+.|+..-..+-
T Consensus 19 pe~sr~L~~LIk~EK~vi~s~e~~a 43 (234)
T 3plt_A 19 PELARKLSQLVKTEKGVLRAMEVVA 43 (234)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5999999999999988876543333
No 169
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=25.88 E-value=87 Score=26.78 Aligned_cols=35 Identities=29% Similarity=0.239 Sum_probs=25.7
Q ss_pred hHHHHHhhcchHHHHHHHhhHHHHHHHHHHHHHHH
Q 001390 200 DSNALMVRLDSTEKENASLKYEVRVLGKELEIRNE 234 (1088)
Q Consensus 200 ei~~Lq~rLE~~EKEn~sLKyEl~vlqkELEIr~e 234 (1088)
.+..|+.+.+.++.+|..|+.+|..+..++.-+..
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888888888777777655543
No 170
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=25.49 E-value=5.6e+02 Score=26.23 Aligned_cols=90 Identities=11% Similarity=0.171 Sum_probs=0.0
Q ss_pred hhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHH-----------------------HHHHhhHHHHHHHHHhHHHHHH
Q 001390 786 SEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQ-----------------------KIVSNSQNELDILKKSKEVIED 842 (1088)
Q Consensus 786 eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE-----------------------~kLeELksELesLeES~selEe 842 (1088)
+++.....++.--...++...+-+.....|+.--+ ...+-|+..|..+.++...+++
T Consensus 38 e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~~qer~~~~~~~~f~~e~~~~E~~~l~~N~e~LksRL~~l~~sk~~L~e 117 (170)
T 3l4q_C 38 EEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQ 117 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTGGGSSSSSCCCSSSTTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhH
Q 001390 843 QVKLQKMINEDLDTQLKVARVDLNEACQKLSSL 875 (1088)
Q Consensus 843 QLk~~~e~le~LesqL~eleaEl~qlqeKVsSL 875 (1088)
.++.....+..++.+++.++-++.++...-+.+
T Consensus 118 ~L~~q~~~~relERemnsLKPeL~qL~K~rD~y 150 (170)
T 3l4q_C 118 ELRAQASDNREIDKRMNSLKPDLMQLRKIRDQY 150 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
No 171
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=25.10 E-value=1.9e+02 Score=26.99 Aligned_cols=64 Identities=25% Similarity=0.326 Sum_probs=41.5
Q ss_pred HHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHHHHHHHHhhhhhhhhh
Q 001390 109 EERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQS-----LMILEEKLAETSKRLAKLGVENTHLT 177 (1088)
Q Consensus 109 EErvkhLd~aLKecmkQLr~~rEEqEqki~da~~kks~E~Ek~-----~~eLE~kL~El~k~L~k~~aEn~~Ls 177 (1088)
+.|.+.|..+|.++.+.| +++.+-.+++.+-..-|.+- -..++.+|.++.+.|+.++++...+.
T Consensus 14 eqRkkkL~~Ki~el~~ei-----~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q 82 (98)
T 2ke4_A 14 EQQRKRLQQQLEERSREL-----QKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYE 82 (98)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777 66666666665533333221 12348889999888888888865555
No 172
>3htk_B Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=25.05 E-value=3.4e+02 Score=23.58 Aligned_cols=58 Identities=9% Similarity=-0.014 Sum_probs=30.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 001390 827 QNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSN 884 (1088)
Q Consensus 827 ksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~ 884 (1088)
..++...-.....+-.++...-..+.+...++...++..-+.+++..+++.-+.....
T Consensus 10 e~kI~~~~~~~~~~l~~~~~~~~~l~~~~~el~~~~i~~lE~~N~~~s~~~li~~~~~ 67 (73)
T 3htk_B 10 DDQIQQLLLKQRHLLSKMASSMKSLKNCQKELISTQILQFEAQNMDVSMNDVIGFFNE 67 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHhHHHHHHHHHHH
Confidence 3333333444444444444444444555556666666666677776666655554433
No 173
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=24.66 E-value=4.1e+02 Score=30.66 Aligned_cols=111 Identities=11% Similarity=0.062 Sum_probs=0.0
Q ss_pred hhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001390 786 SEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDL 865 (1088)
Q Consensus 786 eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl 865 (1088)
.+...++.....++..++.+..+++..+......-...+..+.+...++........+++.+...+......+...+.++
T Consensus 129 kerK~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~~~Y 208 (486)
T 3haj_A 129 KETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKY 208 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001390 866 NEACQKLSSLEVELEDKSNCCEELEATCLELQLQ 899 (1088)
Q Consensus 866 ~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQ 899 (1088)
.....+.+....+.+ .....+-..|++++++
T Consensus 209 ~~~v~~~n~~~~~y~---~~~~~~~~~lQ~lEee 239 (486)
T 3haj_A 209 EKSLKELDQGTPQYM---ENMEQVFEQCQQFEEK 239 (486)
T ss_dssp HHHHHHHHTTSHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
No 174
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=24.63 E-value=3.4e+02 Score=23.48 Aligned_cols=20 Identities=10% Similarity=0.233 Sum_probs=9.2
Q ss_pred hhhhHHHHHHHHHHHHHHHh
Q 001390 883 SNCCEELEATCLELQLQLES 902 (1088)
Q Consensus 883 r~~lEEl~aKc~eLeeQLEr 902 (1088)
+..+.++..+++.|+-+|+.
T Consensus 55 k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 55 KQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33344444444455555543
No 175
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=24.62 E-value=2.2e+02 Score=28.56 Aligned_cols=62 Identities=11% Similarity=0.035 Sum_probs=26.8
Q ss_pred HHHHHhhHHHHHHHHHhHHHHHHHH------------HHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001390 820 QKIVSNSQNELDILKKSKEVIEDQV------------KLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELED 881 (1088)
Q Consensus 820 E~kLeELksELesLeES~selEeQL------------k~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~ 881 (1088)
...+.++..+...+.+..+..+... ......++....-+..++.++..+..++..|+.++.+
T Consensus 32 ~a~~~~le~e~~kl~~e~~i~eas~~~~~~~~le~~~~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aK 105 (146)
T 2xnx_M 32 RATALEKELEEKKKALELAIDQASQDYNRANVLEKELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAK 105 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHTTTTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHH
Confidence 3344444444444444444444433 3333333333333344444444444444444444443
No 176
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=24.57 E-value=2.1e+02 Score=30.92 Aligned_cols=53 Identities=17% Similarity=0.096 Sum_probs=25.9
Q ss_pred hhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHH
Q 001390 789 INVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIE 841 (1088)
Q Consensus 789 EqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeELksELesLeES~selE 841 (1088)
-.|+..+..+..+|.-+.-+-......+.++..+|+.|+.-.+.+-+.+..+|
T Consensus 152 ~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lE 204 (242)
T 3uux_B 152 SALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIE 204 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555444444444445555555555555555554444444444
No 177
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=23.87 E-value=3.8e+02 Score=31.62 Aligned_cols=33 Identities=9% Similarity=0.123 Sum_probs=16.6
Q ss_pred HhHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHH
Q 001390 807 DKSNSLMSQLQESQKIVSNSQNELDILKKSKEV 839 (1088)
Q Consensus 807 ekLE~lksQLeElE~kLeELksELesLeES~se 839 (1088)
+++-.+..+.+++..++++|+.+...+.+.+..
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~ 102 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRA 102 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555443
No 178
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=23.27 E-value=1.5e+02 Score=34.09 Aligned_cols=10 Identities=40% Similarity=0.617 Sum_probs=7.0
Q ss_pred hhcccccccc
Q 001390 956 AALFDKVIHT 965 (1088)
Q Consensus 956 ~~~~d~~~~~ 965 (1088)
.+-||.|+..
T Consensus 107 ~F~FD~VF~~ 116 (412)
T 3u06_A 107 IFSFDQVFHP 116 (412)
T ss_dssp EEECSEEECT
T ss_pred EEeeCeEcCC
Confidence 4678888743
No 179
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=22.96 E-value=3.8e+02 Score=23.82 Aligned_cols=64 Identities=27% Similarity=0.229 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 001390 815 QLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNC 885 (1088)
Q Consensus 815 QLeElE~kLeELksELesLeES~selEeQLk~~~e~le~LesqL~eleaEl~qlqeKVsSLE~ELE~er~~ 885 (1088)
|-+++..++.+-+.++..|+--++.+-..|....+..+-++ .+....+.+++.|++.+.+-+..
T Consensus 4 QNKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe-------~~~~~~q~s~~~l~k~~~d~~~~ 67 (74)
T 2q6q_A 4 QNKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLE-------DQNLNLQIKISDLEKKLSDANST 67 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTTCC---
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhhhHHHHhhccccchh
Confidence 34455555555566666666555555555554444443332 33455666677776665554433
No 180
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=22.59 E-value=2.6e+02 Score=27.39 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=19.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHhhhc
Q 001390 880 EDKSNCCEELEATCLELQLQLESVTK 905 (1088)
Q Consensus 880 E~er~~lEEl~aKc~eLeeQLEr~e~ 905 (1088)
+..+....++..++.+++.++...+.
T Consensus 64 eeL~~ki~eL~~kvA~le~e~~~~e~ 89 (125)
T 2pms_C 64 EELSDKIDELDAEIAKLEDQLKAAEE 89 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 33555667788888888888887665
No 181
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=22.41 E-value=5.1e+02 Score=24.70 Aligned_cols=32 Identities=6% Similarity=0.119 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHH
Q 001390 808 KSNSLMSQLQESQKIVSNSQNELDILKKSKEV 839 (1088)
Q Consensus 808 kLE~lksQLeElE~kLeELksELesLeES~se 839 (1088)
++...+.++.++..++.+|+..++.++++-.-
T Consensus 12 eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDF 43 (106)
T 4e61_A 12 ELTKSQETIGSLNEEIEQYKGTVSTLEIEREF 43 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444433333333333
No 182
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=22.08 E-value=2.3e+02 Score=26.32 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=5.7
Q ss_pred hhHHHHHHHHHhHHHHH
Q 001390 825 NSQNELDILKKSKEVIE 841 (1088)
Q Consensus 825 ELksELesLeES~selE 841 (1088)
.|+.+...++.++.+++
T Consensus 16 ~Lq~~~~~LE~~l~e~E 32 (95)
T 3mov_A 16 QGQKESRACLERIQELE 32 (95)
T ss_dssp --CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 183
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=22.01 E-value=1.2e+02 Score=32.79 Aligned_cols=23 Identities=9% Similarity=-0.034 Sum_probs=11.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhh
Q 001390 882 KSNCCEELEATCLELQLQLESVT 904 (1088)
Q Consensus 882 er~~lEEl~aKc~eLeeQLEr~e 904 (1088)
.+..++.+.+.+..++.+|+...
T Consensus 133 ~~a~l~~a~a~l~~a~~~l~~~~ 155 (341)
T 3fpp_A 133 IDAQIKRNQASLDTAKTNLDYTR 155 (341)
T ss_dssp HHHHHHHTHHHHTTTTTTTTSSE
T ss_pred HHHHHHHHHHHHHHHHHhhhCCE
Confidence 33344444455555566666543
No 184
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=21.95 E-value=1e+03 Score=28.06 Aligned_cols=121 Identities=13% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchH
Q 001390 132 EQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDST 211 (1088)
Q Consensus 132 EqEqki~da~~kks~E~Ek~~~eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~ 211 (1088)
|.++++..+-. .+|+.++ ++|++.++|.+.+..++++..+.+.....+..+++...+++.+.-+++
T Consensus 338 e~~Kki~naev---ae~~~lr-----------QRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~ 403 (602)
T 1cii_A 338 EGDKKIYNAEV---AEWDKLR-----------QRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENI 403 (602)
T ss_dssp HHHHHHHHHHH---HHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhhhh---hhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHH
Q 001390 212 EKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQR 266 (1088)
Q Consensus 212 EKEn~sLKyEl~vlqkELEIr~eEre~s~ksaEaA~KQhlEsvKKIakLEaECqR 266 (1088)
++..+..+..+...+...+-.+.-++-..-.++.-.+=-...-.|.+++-.|+..
T Consensus 404 ~n~~a~~~~KiAE~KrK~dE~~aIKDAVkfTAdFykkIsEkyGeKykkIAkELAe 458 (602)
T 1cii_A 404 RNQLSGINQKIAEEKRKQDELKATKDAINFTTEFLKSVSEKYGAKAEQLAREMAG 458 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 185
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=21.76 E-value=5.6e+02 Score=25.08 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=9.3
Q ss_pred chHHHHHHHhhHHHHHHHHHH
Q 001390 209 DSTEKENASLKYEVRVLGKEL 229 (1088)
Q Consensus 209 E~~EKEn~sLKyEl~vlqkEL 229 (1088)
+.++..++..+.|+.-.+++|
T Consensus 99 e~le~~la~KkAEleKtqa~L 119 (125)
T 2pms_C 99 EGLEKTIAAKKAELEKTEADL 119 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 186
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=21.61 E-value=1.9e+02 Score=24.20 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 001390 156 EEKLAETSKRLAKLGVENTHLTKALLA 182 (1088)
Q Consensus 156 E~kL~El~k~L~k~~aEn~~Ls~~l~~ 182 (1088)
+.++.++..++..+.+.|..|..+|..
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~ 34 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKE 34 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777888888888777755543
No 187
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=21.35 E-value=5.2e+02 Score=24.32 Aligned_cols=44 Identities=23% Similarity=0.239 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhh
Q 001390 861 ARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLESVT 904 (1088)
Q Consensus 861 leaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr~e 904 (1088)
.+++...--.-|..|..-|.+++....+-..++++|+.+|..+.
T Consensus 37 ~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Ln 80 (99)
T 3ni0_A 37 AETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLN 80 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555554444444555555554443
No 188
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=21.28 E-value=2.6e+02 Score=23.39 Aligned_cols=25 Identities=12% Similarity=0.226 Sum_probs=10.8
Q ss_pred HHhhHHHHHHHHHhHHHHHHHHHHH
Q 001390 823 VSNSQNELDILKKSKEVIEDQVKLQ 847 (1088)
Q Consensus 823 LeELksELesLeES~selEeQLk~~ 847 (1088)
+.+|+.++..+...+..+.+-++..
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~~A 35 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLKEA 35 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333
No 189
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=20.97 E-value=1.9e+02 Score=23.51 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhhhhhHhhhH
Q 001390 181 LAKEKLIEDLGKQRTQAEADS 201 (1088)
Q Consensus 181 ~~~~~ii~eLkee~s~~eaei 201 (1088)
|.-++||..|+++.+.++.+.
T Consensus 27 qnlekiianlrdeiarlenev 47 (52)
T 3he5_B 27 QNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 334478888888777766554
No 190
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=20.77 E-value=2e+02 Score=24.60 Aligned_cols=27 Identities=7% Similarity=0.148 Sum_probs=10.4
Q ss_pred HHHHHHHHhhHHHHHHHHHhHHHHHHH
Q 001390 817 QESQKIVSNSQNELDILKKSKEVIEDQ 843 (1088)
Q Consensus 817 eElE~kLeELksELesLeES~selEeQ 843 (1088)
.+++.++.+|+.+...|...++.++.+
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 191
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=20.53 E-value=1.1e+02 Score=22.63 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=18.4
Q ss_pred chHHHHHHHhhHHHHHHHHHHHHH
Q 001390 209 DSTEKENASLKYEVRVLGKELEIR 232 (1088)
Q Consensus 209 E~~EKEn~sLKyEl~vlqkELEIr 232 (1088)
+.+||+++.|...++.+++.|+-+
T Consensus 4 ealekkcaalesklqalekkleal 27 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888877755
No 192
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=20.08 E-value=75 Score=34.48 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=18.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhhhc
Q 001390 875 LEVELEDKSNCCEELEATCLELQLQLESVTK 905 (1088)
Q Consensus 875 LE~ELE~er~~lEEl~aKc~eLeeQLEr~e~ 905 (1088)
|....++....+.++..++..|+.||+++..
T Consensus 66 L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 66 LAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333344444555566667778888887765
No 193
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=20.06 E-value=9.3e+02 Score=27.65 Aligned_cols=150 Identities=12% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhH------HHHHHHHHHHHHHHHHHHhHH--hHHHHHHhHHHHHHHHH
Q 001390 187 IEDLGKQRTQAEADSNALMVRLDSTEKENASLKY------EVRVLGKELEIRNEEREFNRR--TADESHKQHLESVKKIA 258 (1088)
Q Consensus 187 i~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKy------El~vlqkELEIr~eEre~s~k--saEaA~KQhlEsvKKIa 258 (1088)
...+..+...+..+......+++.|+.++..+.. |...+.+++..+........+ ..+.......-.-..+.
T Consensus 188 ~~~~~~~~~~l~~~~~~~~~~l~~l~~ql~ei~~~~l~~~E~e~L~~~~~~L~~~~~~~~r~~~~~~~~~~~~~d~~~l~ 267 (517)
T 4ad8_A 188 WREAVSRLERLQASQRERARQIDLLAFQVQEISEVSPDPGEEEGLNTELSRLSNLHESSKHPTSLVPRGSGSAADPEALD 267 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHHHHHHC-------------------CTTHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhccCCHHHHH
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHhhhhHHHHhhcCCChhhhhccCCCCCCCcccccCCCCCCCCCcchhhhHHHHHHHhH
Q 001390 259 KLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPSKRINFLTEQLRAME 338 (1088)
Q Consensus 259 kLEaECqRLr~l~rk~lpgpaa~a~mk~eve~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~e 338 (1088)
.++..+..++.+.||.-+.+..+.....++.. ..........++..++
T Consensus 268 ~i~~rl~~l~~l~~k~~~~~~~l~~~~~~~~~--------------------------------~l~~l~~~~~~l~~l~ 315 (517)
T 4ad8_A 268 RVEARLSALSKLKNKYGPTLEDVVEFGAQAAE--------------------------------ELAGLEEDERDAGSLQ 315 (517)
T ss_dssp HHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--------------------------------HHHHHhccHHHHHHHH
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHhhhh
Q 001390 339 EENNSLKEVLDKKTNELQFSRTMYARAASK 368 (1088)
Q Consensus 339 eEnk~lke~L~~k~~ELq~sr~~~a~t~sk 368 (1088)
.+.+.+++.+......|-..|...+....+
T Consensus 316 ~~~~~~~~~~~~~~~~L~~~R~~~~~~l~~ 345 (517)
T 4ad8_A 316 ADVDALHAELLKVGQALDAAREREAEPLVD 345 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!