Query 001390
Match_columns 1088
No_of_seqs 167 out of 177
Neff 4.6
Searched_HMMs 13730
Date Tue Mar 26 01:38:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001390.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/001390hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxka_ a.2.5.1 (A:) Prefoldin 71.4 11 0.00082 32.9 10.0 34 869-902 71-104 (107)
2 d1fxkc_ a.2.5.1 (C:) Prefoldin 68.8 38 0.0027 30.0 13.4 30 872-901 97-126 (133)
3 d1f5na1 a.114.1.1 (A:284-583) 57.0 87 0.0064 30.1 16.1 31 82-112 148-178 (300)
4 d1fxkc_ a.2.5.1 (C:) Prefoldin 48.5 86 0.0063 27.5 12.5 42 856-897 88-129 (133)
5 d1urua_ a.238.1.1 (A:) Amphiph 36.5 1.5E+02 0.011 26.9 13.4 41 786-826 12-52 (217)
6 d1seta1 a.2.7.1 (A:1-110) Sery 36.4 62 0.0045 27.9 8.6 21 814-834 35-55 (110)
7 d1seta1 a.2.7.1 (A:1-110) Sery 32.6 78 0.0057 27.2 8.6 27 815-841 29-55 (110)
8 d1gs9a_ a.24.1.1 (A:) Apolipop 26.9 1.6E+02 0.012 26.1 10.1 22 145-166 73-94 (144)
9 d1gqea_ e.38.1.1 (A:) Polypept 26.4 3.5E+02 0.025 27.9 14.3 17 1039-1055 244-260 (362)
10 d1urfa_ a.2.6.1 (A:) Protein k 25.8 1.6E+02 0.012 24.6 9.0 58 214-271 9-73 (81)
11 d1j8yf1 a.24.13.1 (F:3-86) Sig 23.4 12 0.00086 32.0 1.1 34 531-564 3-36 (84)
12 d2fzta1 a.46.3.1 (A:1-78) Hypo 22.1 1.1E+02 0.0078 25.4 6.8 66 154-226 5-70 (78)
13 d1gqea_ e.38.1.1 (A:) Polypept 20.1 4.2E+02 0.03 27.2 13.0 16 680-697 342-357 (362)
No 1
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=71.35 E-value=11 Score=32.94 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=17.2
Q ss_pred HHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 001390 869 CQKLSSLEVELEDKSNCCEELEATCLELQLQLES 902 (1088)
Q Consensus 869 qeKVsSLE~ELE~er~~lEEl~aKc~eLeeQLEr 902 (1088)
..+++.|+.++......+..+..++.+++.+|..
T Consensus 71 ~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~~ 104 (107)
T d1fxka_ 71 QEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555543
No 2
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=68.77 E-value=38 Score=30.03 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=12.1
Q ss_pred HhhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001390 872 LSSLEVELEDKSNCCEELEATCLELQLQLE 901 (1088)
Q Consensus 872 VsSLE~ELE~er~~lEEl~aKc~eLeeQLE 901 (1088)
+..|+..++.....+..+..++..++.+++
T Consensus 97 i~~l~~~~~~l~~~~~~~~~~i~~l~~~~~ 126 (133)
T d1fxkc_ 97 KNELESTLQKMGENLRAITDIMMKLSPQAE 126 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444443
No 3
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.05 E-value=87 Score=30.11 Aligned_cols=31 Identities=19% Similarity=0.130 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhHHHhh
Q 001390 82 TGREKAEAEVVSLKQELDAALQQRDTGEERL 112 (1088)
Q Consensus 82 ~GweKaEaE~~slKkqLe~~~qq~v~lEErv 112 (1088)
.|+.....++..++.++.....+....++-+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 178 (300)
T d1f5na1 148 GGYRLFVQKLQDLKKKYYEEPRKGIQAEEIL 178 (300)
T ss_dssp THHHHHHHHHHHHHHHHHHSSCCCTTHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3667777777777777776655555544433
No 4
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=48.54 E-value=86 Score=27.51 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHH
Q 001390 856 TQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQ 897 (1088)
Q Consensus 856 sqL~eleaEl~qlqeKVsSLE~ELE~er~~lEEl~aKc~eLe 897 (1088)
.....++-.+..+...+..|..++...+..+..+..+++++.
T Consensus 88 eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~ 129 (133)
T d1fxkc_ 88 DAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555566666666666666666666665554
No 5
>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=36.54 E-value=1.5e+02 Score=26.87 Aligned_cols=41 Identities=10% Similarity=-0.010 Sum_probs=24.2
Q ss_pred hhhhhhHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 001390 786 SEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNS 826 (1088)
Q Consensus 786 eeLEqLesEK~eLE~rLq~~qekLE~lksQLeElE~kLeEL 826 (1088)
++++.+......++..+..+..........++++-.....+
T Consensus 12 ~~fe~~~~~~~~~e~~l~~l~k~~~~~~~~~~~~~~~~~~~ 52 (217)
T d1urua_ 12 EIFDDHLNNFNRQQASANRLQKEFNNYIRCVRAAQAASKTL 52 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677766777666666666665555555544333333
No 6
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=36.44 E-value=62 Score=27.86 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHH
Q 001390 814 SQLQESQKIVSNSQNELDILK 834 (1088)
Q Consensus 814 sQLeElE~kLeELksELesLe 834 (1088)
.+.+++..+++.|+.+...+.
T Consensus 35 ~~rr~l~~~~e~l~~~rN~~s 55 (110)
T d1seta1 35 REVQELKKRLQEVQTERNQVA 55 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333
No 7
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=32.59 E-value=78 Score=27.17 Aligned_cols=27 Identities=11% Similarity=0.213 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhHHHHH
Q 001390 815 QLQESQKIVSNSQNELDILKKSKEVIE 841 (1088)
Q Consensus 815 QLeElE~kLeELksELesLeES~selE 841 (1088)
.+-++..+..++..+++.++.....+.
T Consensus 29 ~i~~ld~~rr~l~~~~e~l~~~rN~~s 55 (110)
T d1seta1 29 ALLALDREVQELKKRLQEVQTERNQVA 55 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 8
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=26.85 E-value=1.6e+02 Score=26.08 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 001390 145 SMEFEQSLMILEEKLAETSKRL 166 (1088)
Q Consensus 145 s~E~Ek~~~eLE~kL~El~k~L 166 (1088)
..+.+.++..|+..+.++..+|
T Consensus 73 ~~~~e~lr~~l~~~lee~r~kl 94 (144)
T d1gs9a_ 73 SKELQAAQARLGADMEDVRGRL 94 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666655554
No 9
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=26.40 E-value=3.5e+02 Score=27.92 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=8.3
Q ss_pred cCCCCCCcccccceEEE
Q 001390 1039 NGTKHQDDDTVDKLLAI 1055 (1088)
Q Consensus 1039 ~g~~~~~~~~~~~~lAi 1055 (1088)
.|.-||-.+++.-++.|
T Consensus 244 ~g~GGQ~vN~t~savri 260 (362)
T d1gqea_ 244 SGAGGQHVNRTESAVRI 260 (362)
T ss_dssp CCSSCCSTTSSCCEEEE
T ss_pred CCCCccchhhhhceeEE
Confidence 44444544444455555
No 10
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.80 E-value=1.6e+02 Score=24.58 Aligned_cols=58 Identities=14% Similarity=0.032 Sum_probs=41.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH-------hHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001390 214 ENASLKYEVRVLGKELEIRNEEREF-------NRRTADESHKQHLESVKKIAKLESECQRLRVLV 271 (1088)
Q Consensus 214 En~sLKyEl~vlqkELEIr~eEre~-------s~ksaEaA~KQhlEsvKKIakLEaECqRLr~l~ 271 (1088)
.+..|+.+|++-.+..+=-..+..+ .++++..|...+.++..||.-|..++.+++...
T Consensus 9 rl~~L~~~L~iE~kvkeGaEnm~k~~~~~~~~DrK~l~eaq~~l~eS~~Ki~lLr~~L~~~~q~~ 73 (81)
T d1urfa_ 9 RVAGLEKQLAIELKVKQGAENMIQTYSNGSTKDRKLLLTAQQMLQDSKTKIDIIRMQLRRALQAD 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555444443333333333 689999999999999999999999999998774
No 11
>d1j8yf1 a.24.13.1 (F:3-86) Signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}
Probab=23.41 E-value=12 Score=31.97 Aligned_cols=34 Identities=9% Similarity=0.239 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHhhccCCCChhhhHHHHHHHhhh
Q 001390 531 SWLQEILELILEQNHVTNRHPYKILEDVRDALVY 564 (1088)
Q Consensus 531 ~wlq~~l~~v~e~~~~~~~~~~~iledi~~al~~ 564 (1088)
+-|.+.++.+.....+++.+++++|.||+.||=.
T Consensus 3 ~~l~~a~~kl~~~~~i~E~~i~~~l~eIr~ALLe 36 (84)
T d1j8yf1 3 DNLRDTVRKFLTGSSSYDKAVEDFIKELQKSLIS 36 (84)
T ss_dssp HHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHh
Confidence 4577889999999999999999999999999944
No 12
>d2fzta1 a.46.3.1 (A:1-78) Hypothetical protein TM0693 {Thermotoga maritima [TaxId: 2336]}
Probab=22.11 E-value=1.1e+02 Score=25.39 Aligned_cols=66 Identities=27% Similarity=0.316 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhHhhhHHHHHhhcchHHHHHHHhhHHHHHHH
Q 001390 154 ILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLG 226 (1088)
Q Consensus 154 eLE~kL~El~k~L~k~~aEn~~Ls~~l~~~~~ii~eLkee~s~~eaei~~Lq~rLE~~EKEn~sLKyEl~vlq 226 (1088)
++|.+|.++ +.++.=| .|...|..|++++..|-..+= +.-.+.=..|++-.++...+|+.++.++.
T Consensus 5 EiErkIDea---IE~EDyE--~L~~LL~kReell~~Lp~~~L--~ei~EkD~kR~e~i~k~~~~L~q~~~~ir 70 (78)
T d2fzta1 5 EIERKIDEA---IEKEDYE--TLLSLLNKRKELMEGLPKDKL--SEILEKDRKRLEIIEKRKTALFQEINVIR 70 (78)
T ss_dssp HHHHHHHHH---HHHTCHH--HHHHHHHHHHHHHTTSCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHhhHH--HHHHHHHHHHHHHHHCcHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666 4444444 366667777777766654432 11122235788889999999988776653
No 13
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=20.07 E-value=4.2e+02 Score=27.25 Aligned_cols=16 Identities=19% Similarity=0.370 Sum_probs=11.3
Q ss_pred HhhhhcCchhHHHHHHHH
Q 001390 680 CYGVLNKEADFNKFANDL 697 (1088)
Q Consensus 680 c~~~L~gk~~l~~f~~el 697 (1088)
...||+| +|..|+..+
T Consensus 342 ~~~vl~G--~ld~~i~a~ 357 (362)
T d1gqea_ 342 TQAVLDG--SLDQFIEAS 357 (362)
T ss_dssp HHHHHTT--CCHHHHHHH
T ss_pred hhHHhCC--CHHHHHHHH
Confidence 3457888 488887763
Done!