Query 001391
Match_columns 1088
No_of_seqs 608 out of 4823
Neff 9.3
Searched_HMMs 46136
Date Thu Mar 28 23:37:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001391.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001391hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0318 WD40 repeat stress pro 100.0 7.4E-45 1.6E-49 387.6 57.3 528 5-670 40-602 (603)
2 KOG0319 WD40-repeat-containing 100.0 4.1E-45 8.9E-50 404.5 50.6 584 23-908 25-621 (775)
3 KOG0974 WD-repeat protein WDR6 100.0 6.1E-45 1.3E-49 419.2 50.2 740 16-907 6-772 (967)
4 KOG0319 WD40-repeat-containing 100.0 8.6E-41 1.9E-45 370.3 46.1 511 4-668 84-617 (775)
5 KOG0306 WD40-repeat-containing 100.0 4.2E-40 9.1E-45 364.2 48.9 559 89-907 35-665 (888)
6 KOG0306 WD40-repeat-containing 100.0 8.2E-40 1.8E-44 361.9 50.1 522 5-671 44-623 (888)
7 KOG2106 Uncharacterized conser 100.0 5.1E-39 1.1E-43 340.8 53.3 535 90-905 78-625 (626)
8 KOG0318 WD40 repeat stress pro 100.0 4.1E-37 8.9E-42 328.5 60.3 564 35-906 30-602 (603)
9 KOG0291 WD40-repeat-containing 100.0 1.6E-36 3.4E-41 336.2 58.1 556 4-673 35-615 (893)
10 KOG0271 Notchless-like WD40 re 100.0 1.7E-39 3.6E-44 333.7 29.6 319 16-444 114-476 (480)
11 KOG0271 Notchless-like WD40 re 100.0 4.1E-38 9E-43 323.5 29.1 330 55-500 106-479 (480)
12 KOG0291 WD40-repeat-containing 100.0 5.9E-34 1.3E-38 315.8 56.3 468 17-613 96-615 (893)
13 KOG0272 U4/U6 small nuclear ri 100.0 4.9E-37 1.1E-41 320.4 22.8 278 17-376 175-458 (459)
14 KOG1063 RNA polymerase II elon 100.0 2.8E-32 6.1E-37 300.5 46.3 626 35-831 25-763 (764)
15 KOG0286 G-protein beta subunit 100.0 4E-33 8.6E-38 278.2 32.5 284 16-376 54-343 (343)
16 KOG0276 Vesicle coat complex C 100.0 4.1E-32 8.9E-37 295.1 41.1 461 16-612 12-492 (794)
17 KOG1408 WD40 repeat protein [F 100.0 5.3E-32 1.2E-36 297.1 41.9 522 5-611 59-714 (1080)
18 KOG2106 Uncharacterized conser 100.0 1.8E-30 3.9E-35 276.1 46.8 504 16-669 103-625 (626)
19 KOG0315 G-protein beta subunit 100.0 1.2E-31 2.7E-36 261.5 29.7 280 1-357 17-309 (311)
20 KOG0279 G protein beta subunit 100.0 5.6E-31 1.2E-35 261.7 32.2 298 122-553 5-313 (315)
21 KOG0272 U4/U6 small nuclear ri 100.0 2.1E-32 4.6E-37 285.9 23.2 287 124-500 167-458 (459)
22 KOG0292 Vesicle coat complex C 100.0 1.9E-29 4.1E-34 283.6 48.1 310 16-379 8-322 (1202)
23 KOG0315 G-protein beta subunit 100.0 4.6E-31 1E-35 257.5 29.1 282 36-388 11-299 (311)
24 KOG1408 WD40 repeat protein [F 100.0 2E-28 4.2E-33 269.2 46.6 608 89-907 50-714 (1080)
25 KOG0273 Beta-transducin family 100.0 3.6E-30 7.8E-35 272.4 31.5 315 16-446 177-521 (524)
26 KOG0279 G protein beta subunit 100.0 1.8E-29 3.8E-34 251.0 31.5 284 16-378 14-313 (315)
27 KOG0645 WD40 repeat protein [G 100.0 7.2E-29 1.6E-33 245.6 32.8 295 122-502 4-311 (312)
28 KOG0285 Pleiotropic regulator 100.0 2E-29 4.3E-34 257.6 26.8 280 16-378 150-439 (460)
29 KOG0295 WD40 repeat-containing 100.0 1.3E-29 2.8E-34 260.4 25.3 280 16-377 107-405 (406)
30 KOG0276 Vesicle coat complex C 100.0 1E-27 2.3E-32 260.9 41.1 240 65-379 13-258 (794)
31 KOG1063 RNA polymerase II elon 100.0 2.7E-27 5.8E-32 261.4 44.6 582 2-670 32-763 (764)
32 KOG0286 G-protein beta subunit 100.0 2.7E-28 5.8E-33 243.8 33.1 294 121-500 44-343 (343)
33 KOG0285 Pleiotropic regulator 100.0 3.3E-29 7.2E-34 256.0 26.5 296 118-503 137-440 (460)
34 KOG0281 Beta-TrCP (transducin 100.0 1.1E-30 2.4E-35 265.2 15.5 255 2-337 215-479 (499)
35 KOG1539 WD repeat protein [Gen 100.0 2.5E-26 5.5E-31 258.6 51.4 467 33-672 45-525 (910)
36 KOG1539 WD repeat protein [Gen 100.0 5.9E-26 1.3E-30 255.7 53.2 524 3-672 55-608 (910)
37 KOG0296 Angio-associated migra 100.0 1.4E-27 3E-32 245.8 33.9 340 124-610 56-398 (399)
38 KOG0292 Vesicle coat complex C 100.0 2.8E-26 6.1E-31 258.4 46.3 364 64-555 8-399 (1202)
39 KOG0263 Transcription initiati 100.0 2.1E-28 4.5E-33 275.9 28.2 261 56-379 370-650 (707)
40 KOG0273 Beta-transducin family 100.0 7.2E-28 1.5E-32 255.1 30.1 336 124-610 171-523 (524)
41 KOG0284 Polyadenylation factor 100.0 2.4E-29 5.2E-34 261.7 16.9 275 18-377 97-379 (464)
42 KOG0645 WD40 repeat protein [G 100.0 4.4E-27 9.5E-32 233.0 31.6 282 16-378 13-311 (312)
43 KOG0265 U5 snRNP-specific prot 100.0 1.8E-27 3.9E-32 239.0 27.8 280 16-374 46-334 (338)
44 KOG0281 Beta-TrCP (transducin 100.0 3.1E-29 6.7E-34 254.7 14.6 281 66-450 198-479 (499)
45 KOG0296 Angio-associated migra 100.0 6.6E-27 1.4E-31 240.8 29.1 302 1-377 83-397 (399)
46 KOG0263 Transcription initiati 100.0 1.5E-27 3.2E-32 269.0 26.1 236 18-335 379-648 (707)
47 KOG2048 WD40 repeat protein [G 100.0 4.3E-25 9.3E-30 244.2 44.7 478 2-611 45-549 (691)
48 KOG0295 WD40 repeat-containing 100.0 2.1E-27 4.6E-32 244.1 21.8 257 1-335 127-405 (406)
49 KOG0266 WD40 repeat-containing 100.0 2.1E-26 4.6E-31 269.3 32.0 281 16-378 158-454 (456)
50 cd00200 WD40 WD40 domain, foun 99.9 3.3E-25 7.1E-30 244.3 36.2 278 16-376 8-289 (289)
51 KOG2048 WD40 repeat protein [G 99.9 3.1E-23 6.7E-28 229.5 49.3 507 17-671 25-549 (691)
52 PLN00181 protein SPA1-RELATED; 99.9 5.5E-25 1.2E-29 277.2 39.4 284 16-377 482-792 (793)
53 KOG0277 Peroxisomal targeting 99.9 6.9E-26 1.5E-30 222.3 23.5 281 22-377 13-308 (311)
54 KOG0265 U5 snRNP-specific prot 99.9 3.8E-25 8.3E-30 222.3 27.3 282 58-444 41-334 (338)
55 KOG0284 Polyadenylation factor 99.9 2.6E-26 5.5E-31 239.3 17.7 270 67-441 98-372 (464)
56 KOG0316 Conserved WD40 repeat- 99.9 5.8E-25 1.3E-29 213.2 25.5 274 16-376 16-297 (307)
57 KOG0313 Microtubule binding pr 99.9 8.5E-25 1.8E-29 226.2 27.4 282 16-377 104-417 (423)
58 KOG0316 Conserved WD40 repeat- 99.9 1.7E-24 3.7E-29 209.9 26.4 252 123-452 8-261 (307)
59 KOG0266 WD40 repeat-containing 99.9 5.2E-24 1.1E-28 249.2 33.5 285 59-443 153-449 (456)
60 KOG0293 WD40 repeat-containing 99.9 1.1E-24 2.5E-29 226.8 23.5 279 16-378 223-513 (519)
61 KOG0274 Cdc4 and related F-box 99.9 4E-24 8.8E-29 248.5 30.1 273 16-379 207-483 (537)
62 PLN00181 protein SPA1-RELATED; 99.9 4.7E-23 1E-27 259.7 41.6 320 43-447 457-792 (793)
63 KOG0293 WD40 repeat-containing 99.9 3.3E-24 7.2E-29 223.3 24.5 294 247-611 215-514 (519)
64 cd00200 WD40 WD40 domain, foun 99.9 6.1E-23 1.3E-27 226.1 36.2 282 126-500 3-289 (289)
65 KOG0313 Microtubule binding pr 99.9 2.8E-23 6.1E-28 215.0 27.2 295 130-502 103-418 (423)
66 KOG0282 mRNA splicing factor [ 99.9 1.3E-24 2.8E-29 231.7 17.9 286 55-444 205-501 (503)
67 KOG0277 Peroxisomal targeting 99.9 3.3E-23 7.1E-28 203.6 22.9 283 60-443 6-304 (311)
68 KOG0283 WD40 repeat-containing 99.9 3.5E-23 7.5E-28 236.1 25.2 316 124-554 258-577 (712)
69 KOG1446 Histone H3 (Lys4) meth 99.9 1.2E-21 2.7E-26 199.7 33.1 278 17-378 14-303 (311)
70 KOG0310 Conserved WD40 repeat- 99.9 9.3E-23 2E-27 218.2 25.7 280 16-377 25-308 (487)
71 KOG0308 Conserved WD40 repeat- 99.9 2.3E-23 5.1E-28 228.8 21.6 270 35-378 37-327 (735)
72 KOG0274 Cdc4 and related F-box 99.9 2.6E-22 5.6E-27 233.5 30.0 277 61-451 204-485 (537)
73 KOG0282 mRNA splicing factor [ 99.9 7.8E-24 1.7E-28 225.8 15.5 281 16-376 213-503 (503)
74 KOG0643 Translation initiation 99.9 1.3E-22 2.8E-27 200.7 22.6 279 16-379 9-318 (327)
75 KOG0301 Phospholipase A2-activ 99.9 1.6E-22 3.5E-27 224.1 25.1 284 122-505 4-291 (745)
76 KOG0288 WD40 repeat protein Ti 99.9 1.9E-23 4.1E-28 218.4 16.6 276 16-375 174-458 (459)
77 KOG0275 Conserved WD40 repeat- 99.9 2.5E-23 5.5E-28 209.8 16.0 283 130-500 211-507 (508)
78 KOG0643 Translation initiation 99.9 1.9E-21 4.2E-26 192.5 27.9 296 60-443 6-312 (327)
79 KOG0289 mRNA splicing factor [ 99.9 7.2E-22 1.6E-26 207.6 25.8 278 19-377 221-505 (506)
80 KOG0278 Serine/threonine kinas 99.9 9.8E-23 2.1E-27 199.3 17.9 286 128-505 10-300 (334)
81 KOG0288 WD40 repeat protein Ti 99.9 6.5E-23 1.4E-27 214.4 16.4 204 123-379 166-372 (459)
82 KOG0772 Uncharacterized conser 99.9 4.2E-22 9E-27 213.2 22.8 295 16-376 166-485 (641)
83 KOG1407 WD40 repeat protein [F 99.9 4.4E-21 9.6E-26 189.5 26.8 269 16-369 19-293 (313)
84 KOG0300 WD40 repeat-containing 99.9 8.2E-22 1.8E-26 198.6 22.0 295 16-378 147-476 (481)
85 KOG0301 Phospholipase A2-activ 99.9 1.4E-21 3E-26 216.7 25.9 281 55-448 5-288 (745)
86 KOG0647 mRNA export protein (c 99.9 1.7E-21 3.8E-26 196.2 24.2 270 17-366 27-311 (347)
87 KOG0305 Anaphase promoting com 99.9 3E-21 6.5E-26 215.6 28.6 264 34-378 187-461 (484)
88 KOG0278 Serine/threonine kinas 99.9 2.5E-22 5.4E-27 196.6 16.9 277 16-378 13-297 (334)
89 KOG0772 Uncharacterized conser 99.9 2.1E-21 4.5E-26 207.9 24.7 309 121-501 156-486 (641)
90 KOG0300 WD40 repeat-containing 99.9 3.1E-21 6.7E-26 194.4 24.3 319 122-503 138-477 (481)
91 KOG1445 Tumor-specific antigen 99.9 2.1E-19 4.6E-24 196.0 40.0 223 97-377 55-292 (1012)
92 KOG0299 U3 snoRNP-associated p 99.9 7.1E-21 1.5E-25 202.2 27.9 288 59-437 137-444 (479)
93 KOG0275 Conserved WD40 repeat- 99.9 2.4E-22 5.2E-27 202.8 15.8 274 19-376 215-507 (508)
94 KOG0268 Sof1-like rRNA process 99.9 5.5E-22 1.2E-26 204.1 17.8 290 247-672 57-347 (433)
95 KOG0294 WD40 repeat-containing 99.9 3.3E-21 7.1E-26 195.3 23.0 236 16-379 42-282 (362)
96 KOG0268 Sof1-like rRNA process 99.9 2.6E-22 5.7E-27 206.4 15.2 278 16-379 65-346 (433)
97 KOG0310 Conserved WD40 repeat- 99.9 3.6E-21 7.8E-26 206.1 24.3 290 44-443 9-304 (487)
98 KOG0973 Histone transcription 99.9 8.2E-21 1.8E-25 222.1 29.4 295 16-379 12-356 (942)
99 PTZ00421 coronin; Provisional 99.9 6.8E-20 1.5E-24 213.4 35.1 272 16-360 19-315 (493)
100 PTZ00420 coronin; Provisional 99.9 6.7E-20 1.4E-24 214.0 34.7 251 43-360 53-318 (568)
101 KOG2096 WD40 repeat protein [G 99.9 3.1E-20 6.8E-25 187.9 27.5 316 6-376 74-400 (420)
102 KOG0640 mRNA cleavage stimulat 99.9 4E-21 8.6E-26 193.4 20.7 230 58-387 106-345 (430)
103 KOG1407 WD40 repeat protein [F 99.9 3.8E-20 8.3E-25 182.9 26.3 274 126-493 14-293 (313)
104 KOG0283 WD40 repeat-containing 99.9 1.4E-20 3.1E-25 214.9 26.8 264 56-379 258-577 (712)
105 KOG0640 mRNA cleavage stimulat 99.9 5.3E-21 1.1E-25 192.6 19.5 283 16-377 111-425 (430)
106 KOG0308 Conserved WD40 repeat- 99.9 5.2E-21 1.1E-25 210.6 21.1 348 89-612 38-395 (735)
107 KOG0647 mRNA export protein (c 99.9 6.6E-20 1.4E-24 184.9 26.5 280 253-599 24-312 (347)
108 KOG0299 U3 snoRNP-associated p 99.9 2.3E-20 5E-25 198.4 24.4 308 125-553 135-456 (479)
109 KOG0641 WD40 repeat protein [G 99.9 8.4E-19 1.8E-23 169.0 32.8 285 18-378 33-349 (350)
110 KOG0641 WD40 repeat protein [G 99.9 1.2E-18 2.5E-23 168.1 32.3 257 64-381 31-306 (350)
111 KOG0294 WD40 repeat-containing 99.9 2.2E-19 4.7E-24 182.2 28.5 275 195-555 3-283 (362)
112 KOG1036 Mitotic spindle checkp 99.9 1.2E-19 2.6E-24 184.1 26.7 268 18-368 14-294 (323)
113 KOG0305 Anaphase promoting com 99.9 6.6E-20 1.4E-24 205.0 27.3 266 89-451 189-464 (484)
114 KOG0973 Histone transcription 99.9 5.5E-20 1.2E-24 215.2 27.5 320 175-554 10-356 (942)
115 PTZ00421 coronin; Provisional 99.9 2.7E-19 5.8E-24 208.4 32.9 226 16-320 74-315 (493)
116 PTZ00420 coronin; Provisional 99.9 5.2E-19 1.1E-23 206.5 34.4 218 96-379 53-294 (568)
117 KOG1036 Mitotic spindle checkp 99.9 3E-19 6.4E-24 181.3 27.5 279 255-601 12-295 (323)
118 KOG1332 Vesicle coat complex C 99.9 2.8E-20 6E-25 182.1 18.0 249 67-378 13-286 (299)
119 KOG1446 Histone H3 (Lys4) meth 99.8 1.6E-18 3.5E-23 177.1 31.5 288 122-502 4-303 (311)
120 KOG0289 mRNA splicing factor [ 99.8 3.3E-19 7.3E-24 187.7 26.1 280 133-501 220-505 (506)
121 KOG0264 Nucleosome remodeling 99.8 1.1E-19 2.5E-24 193.6 21.9 259 16-336 123-404 (422)
122 KOG0639 Transducin-like enhanc 99.8 1.3E-19 2.9E-24 193.1 20.5 279 15-377 417-703 (705)
123 KOG0646 WD40 repeat protein [G 99.8 4.7E-19 1E-23 188.9 24.0 274 44-385 18-315 (476)
124 KOG1963 WD40 repeat protein [G 99.8 4.8E-17 1E-21 186.7 41.7 477 82-671 26-539 (792)
125 KOG0639 Transducin-like enhanc 99.8 5.4E-19 1.2E-23 188.5 21.8 238 64-377 418-662 (705)
126 KOG0646 WD40 repeat protein [G 99.8 4.7E-19 1E-23 188.9 21.3 256 5-317 62-328 (476)
127 KOG0321 WD40 repeat-containing 99.8 1.1E-18 2.3E-23 192.1 23.6 305 183-614 54-395 (720)
128 KOG1332 Vesicle coat complex C 99.8 1.1E-18 2.4E-23 171.0 20.4 237 192-503 22-287 (299)
129 KOG0269 WD40 repeat-containing 99.8 5.7E-19 1.2E-23 198.4 20.1 286 18-378 40-340 (839)
130 KOG4283 Transcription-coupled 99.8 5.3E-18 1.1E-22 170.1 23.8 300 16-377 42-364 (397)
131 KOG4283 Transcription-coupled 99.8 1.2E-17 2.6E-22 167.6 26.3 319 64-501 42-364 (397)
132 KOG0264 Nucleosome remodeling 99.8 3.1E-18 6.6E-23 182.8 22.9 261 130-446 122-402 (422)
133 KOG2096 WD40 repeat protein [G 99.8 9.1E-18 2E-22 170.2 24.1 305 124-500 78-400 (420)
134 KOG2445 Nuclear pore complex c 99.8 3.3E-17 7.3E-22 165.9 27.7 264 17-335 13-317 (361)
135 KOG0974 WD-repeat protein WDR6 99.8 1E-15 2.2E-20 178.7 41.1 597 191-957 97-737 (967)
136 KOG1538 Uncharacterized conser 99.8 2.1E-16 4.5E-21 173.9 32.1 271 19-378 14-293 (1081)
137 KOG2445 Nuclear pore complex c 99.8 4.9E-17 1.1E-21 164.7 25.1 267 59-377 7-317 (361)
138 KOG1963 WD40 repeat protein [G 99.8 4.6E-15 1E-19 170.6 43.0 480 23-611 22-539 (792)
139 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 3.4E-16 7.3E-21 175.0 33.3 270 1-358 8-300 (300)
140 KOG0321 WD40 repeat-containing 99.8 1.4E-17 3E-22 183.5 20.5 331 260-674 53-395 (720)
141 KOG1445 Tumor-specific antigen 99.8 1.4E-16 3.1E-21 174.2 27.4 160 16-211 78-248 (1012)
142 KOG0650 WD40 repeat nucleolar 99.8 4.8E-17 1E-21 177.7 23.6 292 16-375 399-732 (733)
143 KOG0302 Ribosome Assembly prot 99.8 2.9E-17 6.2E-22 170.5 20.7 250 16-330 150-433 (440)
144 KOG1034 Transcriptional repres 99.8 8.9E-17 1.9E-21 164.2 23.5 323 16-377 37-382 (385)
145 KOG0269 WD40 repeat-containing 99.8 1.7E-17 3.6E-22 186.7 20.1 285 134-502 41-340 (839)
146 KOG2055 WD40 repeat protein [G 99.8 1.4E-16 3.1E-21 169.5 25.7 285 17-378 213-512 (514)
147 KOG2055 WD40 repeat protein [G 99.8 7.9E-17 1.7E-21 171.4 23.5 282 66-447 214-511 (514)
148 KOG1034 Transcriptional repres 99.8 1E-16 2.2E-21 163.8 23.3 309 58-446 31-381 (385)
149 KOG0267 Microtubule severing p 99.8 1.1E-18 2.4E-23 194.5 9.2 234 129-442 25-261 (825)
150 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 2.4E-15 5.2E-20 168.1 36.0 266 36-379 2-280 (300)
151 KOG1538 Uncharacterized conser 99.8 1.2E-15 2.6E-20 167.9 31.4 271 67-503 14-294 (1081)
152 KOG1273 WD40 repeat protein [G 99.8 4.2E-16 9.2E-21 158.1 25.6 288 20-378 26-322 (405)
153 KOG4328 WD40 protein [Function 99.7 3.6E-16 7.7E-21 166.5 24.7 293 16-377 185-494 (498)
154 KOG0267 Microtubule severing p 99.7 4.3E-18 9.2E-23 189.9 10.0 240 5-327 15-259 (825)
155 KOG1274 WD40 repeat protein [G 99.7 1.8E-15 3.9E-20 173.9 30.3 242 66-379 14-263 (933)
156 KOG4378 Nuclear protein COP1 [ 99.7 2.5E-16 5.4E-21 168.3 21.8 269 36-379 4-281 (673)
157 KOG0270 WD40 repeat-containing 99.7 5.7E-16 1.2E-20 164.5 23.3 243 89-378 193-449 (463)
158 KOG4378 Nuclear protein COP1 [ 99.7 6E-16 1.3E-20 165.4 22.0 280 2-365 10-309 (673)
159 KOG1524 WD40 repeat-containing 99.7 6E-15 1.3E-19 159.3 29.4 503 15-671 12-524 (737)
160 KOG1274 WD40 repeat protein [G 99.7 2.9E-15 6.2E-20 172.3 28.2 253 253-611 10-263 (933)
161 KOG1273 WD40 repeat protein [G 99.7 1.8E-15 3.8E-20 153.7 23.3 301 123-503 16-323 (405)
162 KOG0302 Ribosome Assembly prot 99.7 8.4E-16 1.8E-20 159.7 21.1 214 122-378 141-378 (440)
163 KOG1517 Guanine nucleotide bin 99.7 2.3E-15 5E-20 174.2 25.5 310 5-379 1051-1382(1387)
164 KOG0270 WD40 repeat-containing 99.7 9.8E-16 2.1E-20 162.8 19.7 240 22-338 178-452 (463)
165 KOG0650 WD40 repeat nucleolar 99.7 6.9E-15 1.5E-19 161.1 26.6 237 123-378 391-637 (733)
166 KOG1007 WD repeat protein TSSC 99.7 2.6E-15 5.7E-20 150.7 21.4 278 36-378 27-361 (370)
167 KOG4328 WD40 protein [Function 99.7 4.5E-15 9.7E-20 158.2 24.3 266 49-380 171-452 (498)
168 KOG1188 WD40 repeat protein [G 99.7 1.7E-15 3.7E-20 156.0 18.5 285 36-377 41-345 (376)
169 KOG1009 Chromatin assembly com 99.7 2.8E-14 6E-19 150.3 27.5 349 177-612 12-374 (434)
170 KOG0307 Vesicle coat complex C 99.7 3.3E-16 7.2E-21 184.5 14.1 292 18-379 7-328 (1049)
171 KOG1007 WD repeat protein TSSC 99.7 7.4E-15 1.6E-19 147.5 20.6 270 3-335 39-360 (370)
172 KOG1188 WD40 repeat protein [G 99.7 5.8E-15 1.2E-19 152.1 19.8 286 194-555 41-348 (376)
173 COG2319 FOG: WD40 repeat [Gene 99.6 6.3E-12 1.4E-16 146.8 47.2 370 127-611 60-443 (466)
174 COG2319 FOG: WD40 repeat [Gene 99.6 6.1E-12 1.3E-16 146.9 46.4 367 14-503 62-443 (466)
175 KOG2919 Guanine nucleotide-bin 99.6 2.7E-14 5.9E-19 145.7 22.3 276 20-369 52-361 (406)
176 KOG2919 Guanine nucleotide-bin 99.6 5.6E-14 1.2E-18 143.5 23.9 259 68-379 52-328 (406)
177 KOG0290 Conserved WD40 repeat- 99.6 2.2E-13 4.7E-18 137.3 25.5 258 54-379 35-319 (364)
178 KOG4227 WD40 repeat protein [G 99.6 6.3E-14 1.4E-18 145.7 21.0 285 16-378 55-387 (609)
179 KOG0303 Actin-binding protein 99.6 1.6E-13 3.5E-18 143.7 22.9 219 60-379 22-250 (472)
180 KOG0322 G-protein beta subunit 99.6 2.3E-14 4.9E-19 142.5 15.7 295 16-377 13-322 (323)
181 KOG0290 Conserved WD40 repeat- 99.6 8E-14 1.7E-18 140.4 18.6 245 16-326 95-356 (364)
182 KOG1310 WD40 repeat protein [G 99.6 1.6E-13 3.4E-18 148.8 21.6 244 16-289 49-306 (758)
183 KOG0644 Uncharacterized conser 99.6 6.3E-15 1.4E-19 166.7 10.9 268 16-377 189-467 (1113)
184 KOG0649 WD40 repeat protein [G 99.6 1.3E-12 2.8E-17 128.5 25.4 283 19-375 12-313 (325)
185 KOG0642 Cell-cycle nuclear pro 99.6 4.2E-14 9.1E-19 154.8 15.6 261 16-347 293-573 (577)
186 KOG0307 Vesicle coat complex C 99.6 2.1E-14 4.6E-19 169.5 14.0 242 20-335 67-326 (1049)
187 KOG4227 WD40 repeat protein [G 99.6 4.2E-13 9.2E-18 139.6 21.5 262 121-450 45-324 (609)
188 KOG1009 Chromatin assembly com 99.6 7.2E-13 1.6E-17 139.7 23.4 259 63-380 11-374 (434)
189 KOG1334 WD40 repeat protein [G 99.5 9.1E-14 2E-18 149.3 14.4 310 16-379 141-467 (559)
190 KOG0649 WD40 repeat protein [G 99.5 6.6E-12 1.4E-16 123.6 26.0 246 67-379 12-275 (325)
191 KOG0642 Cell-cycle nuclear pro 99.5 2E-13 4.3E-18 149.6 15.9 261 250-555 288-563 (577)
192 KOG0644 Uncharacterized conser 99.5 2.8E-14 6.1E-19 161.5 9.1 212 121-377 179-425 (1113)
193 KOG0303 Actin-binding protein 99.5 5.6E-13 1.2E-17 139.7 18.0 124 251-379 76-204 (472)
194 KOG0322 G-protein beta subunit 99.5 4.2E-13 9.2E-18 133.6 16.0 296 302-669 8-322 (323)
195 KOG1523 Actin-related protein 99.5 3.9E-12 8.4E-17 130.4 22.2 223 17-289 10-239 (361)
196 KOG1587 Cytoplasmic dynein int 99.5 7.8E-12 1.7E-16 144.9 26.4 276 44-378 222-516 (555)
197 KOG1240 Protein kinase contain 99.5 8.3E-12 1.8E-16 147.8 26.7 185 162-379 1034-1226(1431)
198 KOG1517 Guanine nucleotide bin 99.5 5.4E-12 1.2E-16 146.8 24.6 298 134-504 1066-1383(1387)
199 KOG2110 Uncharacterized conser 99.5 2E-11 4.4E-16 127.7 26.1 241 5-288 69-332 (391)
200 PRK11028 6-phosphogluconolacto 99.5 8.5E-11 1.8E-15 133.3 32.8 277 37-378 5-304 (330)
201 PRK11028 6-phosphogluconolacto 99.5 1.3E-10 2.7E-15 131.9 33.7 263 1-335 9-303 (330)
202 KOG1272 WD40-repeat-containing 99.4 2.3E-13 5.1E-18 145.3 9.9 265 18-370 131-401 (545)
203 KOG1334 WD40 repeat protein [G 99.4 1.8E-12 3.9E-17 139.5 15.1 312 121-502 131-466 (559)
204 KOG1240 Protein kinase contain 99.4 4.2E-11 9.1E-16 141.9 27.6 268 49-380 1034-1336(1431)
205 KOG1310 WD40 repeat protein [G 99.4 3.3E-12 7.2E-17 138.8 16.5 186 121-335 39-230 (758)
206 KOG2110 Uncharacterized conser 99.4 7.9E-10 1.7E-14 116.0 32.7 233 67-381 7-251 (391)
207 KOG1524 WD40 repeat-containing 99.4 2.3E-11 5E-16 132.0 19.6 268 254-609 12-285 (737)
208 KOG2111 Uncharacterized conser 99.4 7.9E-10 1.7E-14 113.8 27.8 237 4-287 75-323 (346)
209 KOG1587 Cytoplasmic dynein int 99.3 4.6E-10 1E-14 130.3 28.3 282 97-448 222-516 (555)
210 KOG0771 Prolactin regulatory e 99.3 3.7E-11 8.1E-16 128.2 15.5 195 21-287 148-355 (398)
211 KOG1912 WD40 repeat protein [G 99.3 1.7E-08 3.8E-13 114.6 36.8 491 20-611 18-552 (1062)
212 KOG4497 Uncharacterized conser 99.3 3.7E-10 7.9E-15 116.0 20.8 334 23-494 14-424 (447)
213 KOG2041 WD40 repeat protein [G 99.3 2E-08 4.4E-13 112.7 35.4 458 63-612 12-534 (1189)
214 KOG0771 Prolactin regulatory e 99.3 9E-11 2E-15 125.3 15.8 200 69-335 148-353 (398)
215 KOG2394 WD40 protein DMR-N9 [G 99.3 5.4E-10 1.2E-14 122.0 21.6 244 33-357 133-383 (636)
216 KOG1912 WD40 repeat protein [G 99.3 8E-09 1.7E-13 117.3 31.3 556 5-678 36-728 (1062)
217 KOG2111 Uncharacterized conser 99.3 1.9E-08 4.1E-13 103.8 31.3 302 68-454 8-328 (346)
218 KOG1523 Actin-related protein 99.2 1.1E-09 2.5E-14 112.6 21.3 204 67-379 12-237 (361)
219 PRK01742 tolB translocation pr 99.2 8.3E-10 1.8E-14 129.3 22.2 231 44-359 184-426 (429)
220 KOG1354 Serine/threonine prote 99.2 1E-09 2.3E-14 113.6 19.9 271 18-335 26-358 (433)
221 PRK01742 tolB translocation pr 99.2 6.1E-10 1.3E-14 130.4 21.0 230 3-318 183-425 (429)
222 KOG2139 WD40 repeat protein [G 99.2 7.9E-09 1.7E-13 107.9 25.3 210 18-286 99-309 (445)
223 KOG1409 Uncharacterized conser 99.2 2.3E-09 5E-14 111.3 20.4 227 36-336 37-270 (404)
224 KOG3881 Uncharacterized conser 99.2 2.7E-09 5.9E-14 112.7 21.3 268 18-359 56-342 (412)
225 KOG3881 Uncharacterized conser 99.2 2.7E-09 5.8E-14 112.8 20.6 255 65-379 55-321 (412)
226 KOG2321 WD40 repeat protein [G 99.2 6.9E-09 1.5E-13 114.3 24.4 281 16-377 50-342 (703)
227 KOG2394 WD40 protein DMR-N9 [G 99.1 7.9E-10 1.7E-14 120.8 15.9 212 5-266 145-384 (636)
228 KOG2315 Predicted translation 99.1 2.1E-08 4.6E-13 110.9 25.9 301 3-382 54-394 (566)
229 KOG1272 WD40-repeat-containing 99.1 3.3E-10 7.2E-15 121.6 10.4 190 135-379 132-324 (545)
230 KOG4497 Uncharacterized conser 99.1 4.7E-08 1E-12 100.8 25.5 313 6-371 31-425 (447)
231 PF02239 Cytochrom_D1: Cytochr 99.1 1.7E-07 3.7E-12 106.3 31.9 271 35-379 5-303 (369)
232 KOG1409 Uncharacterized conser 99.1 6.4E-09 1.4E-13 108.1 17.7 223 121-381 13-273 (404)
233 PF02239 Cytochrom_D1: Cytochr 99.0 6E-07 1.3E-11 101.9 34.6 295 2-379 14-348 (369)
234 PRK03629 tolB translocation pr 99.0 6.4E-08 1.4E-12 113.2 25.2 199 128-383 194-411 (429)
235 PRK03629 tolB translocation pr 99.0 1.4E-07 3.1E-12 110.3 26.5 233 45-358 180-427 (429)
236 PF04762 IKI3: IKI3 family; I 99.0 3.5E-05 7.6E-10 97.1 48.7 295 18-379 76-457 (928)
237 KOG2139 WD40 repeat protein [G 98.9 6.4E-07 1.4E-11 94.0 26.5 206 133-377 99-308 (445)
238 PF04762 IKI3: IKI3 family; I 98.9 0.00026 5.5E-09 89.5 54.7 418 131-672 74-521 (928)
239 KOG1354 Serine/threonine prote 98.9 2.9E-07 6.2E-12 95.9 21.6 237 131-378 24-301 (433)
240 KOG0309 Conserved WD40 repeat- 98.9 1.1E-08 2.4E-13 115.4 11.9 290 17-379 24-340 (1081)
241 KOG0280 Uncharacterized conser 98.9 4.5E-07 9.8E-12 92.7 22.2 112 259-379 124-242 (339)
242 PRK04922 tolB translocation pr 98.9 2.7E-07 5.9E-12 108.4 24.2 232 44-358 184-432 (433)
243 KOG2321 WD40 repeat protein [G 98.9 2.8E-07 6E-12 102.0 22.2 236 68-378 54-302 (703)
244 PRK05137 tolB translocation pr 98.9 7.1E-07 1.5E-11 105.0 27.4 200 125-379 194-413 (435)
245 PRK04922 tolB translocation pr 98.8 3.1E-07 6.7E-12 107.9 23.9 198 127-379 198-412 (433)
246 TIGR03300 assembly_YfgL outer 98.8 3.8E-06 8.3E-11 97.1 32.7 263 35-378 65-338 (377)
247 KOG0280 Uncharacterized conser 98.8 4.9E-07 1.1E-11 92.5 20.9 270 44-377 46-332 (339)
248 PRK02889 tolB translocation pr 98.8 7.5E-07 1.6E-11 104.3 25.8 194 126-370 189-392 (427)
249 PRK05137 tolB translocation pr 98.8 1.3E-06 2.8E-11 102.9 27.2 230 45-358 183-432 (435)
250 PF08662 eIF2A: Eukaryotic tra 98.7 7.4E-07 1.6E-11 91.7 19.8 147 22-211 10-179 (194)
251 PRK02889 tolB translocation pr 98.7 1E-06 2.2E-11 103.1 23.7 234 44-358 176-424 (427)
252 TIGR02658 TTQ_MADH_Hv methylam 98.7 1.7E-05 3.7E-10 87.9 31.6 265 44-379 27-331 (352)
253 PF08662 eIF2A: Eukaryotic tra 98.7 7.6E-07 1.7E-11 91.6 19.3 155 136-344 9-187 (194)
254 COG5354 Uncharacterized protei 98.7 8.9E-06 1.9E-10 89.5 27.6 286 6-380 55-397 (561)
255 KOG2041 WD40 repeat protein [G 98.7 3.2E-05 7E-10 87.7 32.3 286 18-378 15-337 (1189)
256 TIGR03300 assembly_YfgL outer 98.7 8.3E-06 1.8E-10 94.3 28.4 284 2-375 73-376 (377)
257 PF10282 Lactonase: Lactonase, 98.7 0.00015 3.2E-09 82.5 37.6 295 271-610 2-322 (345)
258 PF10282 Lactonase: Lactonase, 98.7 0.0003 6.5E-09 80.0 39.8 284 3-356 12-345 (345)
259 KOG1064 RAVE (regulator of V-A 98.7 1.6E-07 3.5E-12 115.9 13.3 188 17-290 2208-2402(2439)
260 KOG2315 Predicted translation 98.6 3.3E-05 7.2E-10 86.2 29.3 275 18-379 35-345 (566)
261 TIGR02800 propeller_TolB tol-p 98.6 5.3E-06 1.2E-10 97.5 24.9 190 126-370 183-386 (417)
262 KOG4547 WD40 repeat-containing 98.6 2.6E-06 5.6E-11 95.6 20.3 143 146-336 69-220 (541)
263 KOG3914 WD repeat protein WDR4 98.6 4.3E-07 9.4E-12 97.1 12.3 162 135-344 65-232 (390)
264 TIGR02800 propeller_TolB tol-p 98.6 1.2E-05 2.6E-10 94.5 26.0 222 44-348 170-409 (417)
265 KOG4547 WD40 repeat-containing 98.6 3.1E-06 6.7E-11 94.9 19.2 188 146-379 4-221 (541)
266 COG5170 CDC55 Serine/threonine 98.6 1.1E-06 2.4E-11 90.1 14.3 236 16-289 25-312 (460)
267 COG2706 3-carboxymuconate cycl 98.6 0.00034 7.5E-09 74.7 32.9 277 89-447 5-320 (346)
268 COG4946 Uncharacterized protei 98.5 0.00023 4.9E-09 77.7 31.7 224 82-367 276-507 (668)
269 KOG1064 RAVE (regulator of V-A 98.5 5.2E-07 1.1E-11 111.6 12.6 189 131-343 2207-2406(2439)
270 KOG2314 Translation initiation 98.5 3.2E-05 7E-10 85.7 25.0 282 19-382 251-577 (698)
271 COG5354 Uncharacterized protei 98.5 5.2E-05 1.1E-09 83.6 25.9 272 17-379 32-349 (561)
272 COG4946 Uncharacterized protei 98.5 0.0039 8.5E-08 68.4 39.1 231 323-612 241-479 (668)
273 KOG0309 Conserved WD40 repeat- 98.5 3E-07 6.4E-12 104.2 8.4 227 6-288 93-341 (1081)
274 COG2706 3-carboxymuconate cycl 98.5 0.00053 1.2E-08 73.3 31.7 264 2-335 14-320 (346)
275 KOG4532 WD40-like repeat conta 98.4 4.2E-05 9E-10 77.6 21.3 265 5-335 53-330 (344)
276 KOG4714 Nucleoporin [Nuclear s 98.4 3.1E-06 6.8E-11 85.2 13.0 75 258-341 181-259 (319)
277 PRK01029 tolB translocation pr 98.4 5.9E-05 1.3E-09 88.0 25.9 242 45-359 166-425 (428)
278 KOG4190 Uncharacterized conser 98.4 1E-06 2.2E-11 96.5 10.1 252 57-377 728-987 (1034)
279 PRK00178 tolB translocation pr 98.4 5E-05 1.1E-09 89.5 25.3 199 126-379 192-407 (430)
280 PRK04792 tolB translocation pr 98.4 7.9E-05 1.7E-09 87.7 26.4 198 128-380 213-427 (448)
281 PRK11138 outer membrane biogen 98.4 0.00029 6.4E-09 81.8 30.9 271 36-378 70-353 (394)
282 TIGR02658 TTQ_MADH_Hv methylam 98.4 0.0014 2.9E-08 73.0 33.8 261 4-344 27-339 (352)
283 PRK00178 tolB translocation pr 98.4 8.6E-05 1.9E-09 87.5 26.1 231 45-358 180-427 (430)
284 KOG4714 Nucleoporin [Nuclear s 98.3 7E-06 1.5E-10 82.8 13.1 250 20-334 39-316 (319)
285 KOG4190 Uncharacterized conser 98.3 2E-06 4.3E-11 94.3 9.3 299 247-606 726-1032(1034)
286 PLN02919 haloacid dehalogenase 98.3 0.00032 6.8E-09 90.4 30.7 221 134-380 625-890 (1057)
287 PRK04792 tolB translocation pr 98.3 0.00016 3.5E-09 85.1 25.4 231 45-358 199-446 (448)
288 KOG3914 WD repeat protein WDR4 98.3 1.5E-05 3.3E-10 85.6 14.5 82 576-675 147-228 (390)
289 KOG2314 Translation initiation 98.2 0.00024 5.2E-09 79.1 22.2 109 69-211 214-334 (698)
290 PF15492 Nbas_N: Neuroblastoma 98.2 0.0028 6.1E-08 66.0 28.5 234 82-379 7-260 (282)
291 PRK01029 tolB translocation pr 98.2 0.00038 8.2E-09 81.3 25.6 204 130-379 182-404 (428)
292 PF00400 WD40: WD domain, G-be 98.2 6.2E-06 1.3E-10 60.2 6.9 38 247-284 2-39 (39)
293 PLN02919 haloacid dehalogenase 98.1 0.0012 2.6E-08 85.3 31.1 269 22-336 572-888 (1057)
294 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.0045 9.8E-08 63.1 27.9 99 268-379 23-124 (354)
295 KOG4532 WD40-like repeat conta 98.1 0.00046 1E-08 70.3 20.9 198 136-379 71-283 (344)
296 PF00400 WD40: WD domain, G-be 98.1 7.6E-06 1.7E-10 59.7 6.0 38 123-163 2-39 (39)
297 COG5170 CDC55 Serine/threonine 98.1 3.9E-05 8.5E-10 79.1 13.1 241 132-386 26-319 (460)
298 PF15492 Nbas_N: Neuroblastoma 98.1 0.00066 1.4E-08 70.5 21.7 203 21-290 47-263 (282)
299 PF13360 PQQ_2: PQQ-like domai 98.0 0.0053 1.1E-07 65.8 28.6 216 43-341 2-236 (238)
300 PRK11138 outer membrane biogen 98.0 0.0031 6.8E-08 73.3 28.1 262 37-377 122-393 (394)
301 KOG3617 WD40 and TPR repeat-co 98.0 0.00055 1.2E-08 79.6 20.5 106 23-166 21-132 (1416)
302 KOG2695 WD40 repeat protein [G 97.9 2.6E-05 5.5E-10 81.8 8.4 165 151-357 228-401 (425)
303 PF13360 PQQ_2: PQQ-like domai 97.9 0.0026 5.7E-08 68.1 23.8 209 2-289 1-233 (238)
304 KOG1832 HIV-1 Vpr-binding prot 97.9 1E-05 2.3E-10 93.6 4.5 193 16-290 1100-1295(1516)
305 KOG1275 PAB-dependent poly(A) 97.8 0.00034 7.4E-09 82.3 15.6 179 146-377 146-341 (1118)
306 PF07433 DUF1513: Protein of u 97.8 0.0066 1.4E-07 65.3 23.9 208 133-379 5-248 (305)
307 KOG3621 WD40 repeat-containing 97.8 0.0031 6.7E-08 72.9 21.8 211 131-384 32-252 (726)
308 PF08450 SGL: SMP-30/Gluconola 97.7 0.062 1.4E-06 57.9 31.0 211 89-365 13-242 (246)
309 KOG0882 Cyclophilin-related pe 97.7 0.00048 1E-08 74.9 13.2 238 89-380 22-307 (558)
310 PF07433 DUF1513: Protein of u 97.6 0.028 6E-07 60.6 25.5 207 20-290 7-251 (305)
311 KOG2695 WD40 repeat protein [G 97.6 0.00016 3.4E-09 76.1 8.2 145 3-177 233-388 (425)
312 KOG4649 PQQ (pyrrolo-quinoline 97.6 0.11 2.4E-06 53.3 28.6 105 147-290 23-127 (354)
313 PF11768 DUF3312: Protein of u 97.6 0.14 2.9E-06 59.1 31.3 80 576-675 255-334 (545)
314 KOG2066 Vacuolar assembly/sort 97.6 0.0023 5E-08 74.9 17.3 187 308-553 39-233 (846)
315 PF08450 SGL: SMP-30/Gluconola 97.6 0.1 2.2E-06 56.2 29.5 217 22-317 4-233 (246)
316 PF11768 DUF3312: Protein of u 97.4 0.17 3.6E-06 58.4 29.0 115 255-378 204-329 (545)
317 PF03178 CPSF_A: CPSF A subuni 97.4 0.13 2.8E-06 57.9 28.6 185 157-379 2-203 (321)
318 PRK04043 tolB translocation pr 97.4 0.03 6.4E-07 65.1 23.6 150 18-211 188-357 (419)
319 KOG1275 PAB-dependent poly(A) 97.4 0.0034 7.3E-08 74.4 15.1 183 36-285 149-341 (1118)
320 KOG2066 Vacuolar assembly/sort 97.3 0.003 6.5E-08 74.0 14.3 184 132-378 39-233 (846)
321 KOG3621 WD40 repeat-containing 97.3 0.038 8.2E-07 64.4 22.0 141 311-475 38-181 (726)
322 KOG1645 RING-finger-containing 97.2 0.019 4.2E-07 62.2 17.6 120 245-377 182-314 (463)
323 KOG1920 IkappaB kinase complex 97.2 0.074 1.6E-06 65.7 24.4 216 18-289 69-325 (1265)
324 KOG3617 WD40 and TPR repeat-co 97.2 0.0081 1.8E-07 70.3 15.4 104 262-378 21-131 (1416)
325 PF08596 Lgl_C: Lethal giant l 97.1 0.3 6.5E-06 56.0 27.6 287 19-377 3-334 (395)
326 KOG0882 Cyclophilin-related pe 97.1 0.0039 8.5E-08 68.1 11.5 215 305-557 6-235 (558)
327 KOG2114 Vacuolar assembly/sort 97.1 0.073 1.6E-06 63.4 22.3 192 190-445 32-240 (933)
328 PF03178 CPSF_A: CPSF A subuni 97.1 0.49 1.1E-05 53.2 29.0 190 44-287 2-203 (321)
329 KOG1645 RING-finger-containing 97.1 0.0099 2.1E-07 64.3 13.7 83 122-211 183-266 (463)
330 PRK04043 tolB translocation pr 97.0 0.28 6E-06 57.1 26.3 189 134-379 189-401 (419)
331 PF04841 Vps16_N: Vps16, N-ter 97.0 0.64 1.4E-05 54.0 29.2 48 45-105 62-109 (410)
332 PRK02888 nitrous-oxide reducta 97.0 0.18 3.8E-06 59.7 24.0 240 34-336 140-404 (635)
333 PF04053 Coatomer_WDAD: Coatom 97.0 0.12 2.5E-06 60.1 22.7 226 67-379 34-263 (443)
334 cd00216 PQQ_DH Dehydrogenases 96.9 0.77 1.7E-05 54.9 30.1 118 37-174 63-192 (488)
335 KOG2114 Vacuolar assembly/sort 96.8 0.17 3.7E-06 60.4 22.2 183 94-337 42-244 (933)
336 PF06977 SdiA-regulated: SdiA- 96.8 0.33 7.2E-06 51.6 22.4 208 126-370 15-242 (248)
337 KOG1920 IkappaB kinase complex 96.6 0.67 1.4E-05 57.8 25.9 70 132-211 68-139 (1265)
338 PF06433 Me-amine-dh_H: Methyl 96.6 1.6 3.4E-05 48.0 26.9 265 44-379 17-321 (342)
339 PRK02888 nitrous-oxide reducta 96.6 1 2.3E-05 53.4 26.5 104 266-379 286-405 (635)
340 cd00216 PQQ_DH Dehydrogenases 96.6 1.3 2.8E-05 52.9 28.6 32 314-345 402-434 (488)
341 KOG1897 Damage-specific DNA bi 96.5 3.5 7.5E-05 50.7 52.5 450 23-553 119-613 (1096)
342 smart00320 WD40 WD40 repeats. 96.4 0.0086 1.9E-07 42.1 5.5 38 247-284 3-40 (40)
343 PF14783 BBS2_Mid: Ciliary BBS 96.3 0.25 5.4E-06 44.7 15.1 69 135-211 2-71 (111)
344 PF06977 SdiA-regulated: SdiA- 96.3 1.9 4.2E-05 45.9 25.8 165 18-211 22-201 (248)
345 KOG1832 HIV-1 Vpr-binding prot 96.3 0.0042 9.1E-08 73.0 4.7 198 121-379 1090-1292(1516)
346 KOG1897 Damage-specific DNA bi 96.2 4.7 0.0001 49.6 53.3 106 533-671 838-943 (1096)
347 PF14783 BBS2_Mid: Ciliary BBS 96.1 0.45 9.7E-06 43.1 15.8 106 20-160 2-109 (111)
348 PF08553 VID27: VID27 cytoplas 96.1 0.57 1.2E-05 57.6 22.0 125 245-377 513-646 (794)
349 smart00320 WD40 WD40 repeats. 96.1 0.0097 2.1E-07 41.8 4.5 38 123-163 3-40 (40)
350 PF08553 VID27: VID27 cytoplas 96.0 0.69 1.5E-05 56.9 22.0 151 33-211 491-647 (794)
351 PF08596 Lgl_C: Lethal giant l 96.0 0.96 2.1E-05 51.9 21.8 176 17-211 86-290 (395)
352 PF04053 Coatomer_WDAD: Coatom 95.7 2.4 5.3E-05 49.4 24.0 137 20-211 35-173 (443)
353 PF00930 DPPIV_N: Dipeptidyl p 95.6 5.6 0.00012 45.3 27.2 276 4-366 23-345 (353)
354 COG3204 Uncharacterized protei 95.5 2.6 5.6E-05 44.9 20.7 184 128-347 81-274 (316)
355 PF05096 Glu_cyclase_2: Glutam 95.4 4.4 9.5E-05 43.1 22.9 116 21-174 48-166 (264)
356 PF05694 SBP56: 56kDa selenium 95.1 7.7 0.00017 44.1 24.1 201 34-290 86-346 (461)
357 PF06433 Me-amine-dh_H: Methyl 95.1 6.7 0.00014 43.3 29.8 278 4-348 17-333 (342)
358 PF12894 Apc4_WD40: Anaphase-p 94.9 0.05 1.1E-06 41.1 4.6 31 580-610 11-41 (47)
359 KOG1008 Uncharacterized conser 94.9 0.011 2.4E-07 67.6 1.5 203 133-378 57-275 (783)
360 PF10168 Nup88: Nuclear pore c 94.5 4.8 0.0001 49.8 22.8 121 36-168 34-182 (717)
361 PF00930 DPPIV_N: Dipeptidyl p 94.4 12 0.00025 42.7 29.4 59 35-106 4-72 (353)
362 PHA02713 hypothetical protein; 94.2 2.9 6.3E-05 50.8 20.1 61 267-335 463-532 (557)
363 KOG2395 Protein involved in va 94.0 1.9 4E-05 49.2 16.0 122 245-377 365-499 (644)
364 KOG4441 Proteins containing BT 94.0 3 6.4E-05 50.6 19.5 220 35-329 285-534 (571)
365 PHA02713 hypothetical protein; 93.8 2.5 5.4E-05 51.3 18.5 63 314-379 460-534 (557)
366 PF04841 Vps16_N: Vps16, N-ter 93.8 17 0.00037 42.3 24.9 67 309-377 217-286 (410)
367 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.7 21 0.00045 43.1 29.7 31 317-347 471-502 (527)
368 PF00780 CNH: CNH domain; Int 93.4 14 0.00031 40.2 26.5 147 192-379 6-166 (275)
369 KOG2444 WD40 repeat protein [G 93.3 0.22 4.7E-06 50.7 6.7 107 146-288 69-179 (238)
370 KOG4640 Anaphase-promoting com 93.2 0.3 6.6E-06 56.5 8.4 70 309-379 21-93 (665)
371 KOG2280 Vacuolar assembly/sort 93.1 6.4 0.00014 47.1 19.0 50 44-106 64-113 (829)
372 COG3386 Gluconolactonase [Carb 93.0 11 0.00023 41.7 20.1 39 124-165 154-193 (307)
373 KOG1898 Splicing factor 3b, su 93.0 32 0.00069 43.1 35.2 105 485-612 946-1050(1205)
374 COG3386 Gluconolactonase [Carb 92.7 19 0.00041 39.9 22.9 118 246-367 152-274 (307)
375 PRK13616 lipoprotein LpqB; Pro 92.5 10 0.00023 46.1 20.8 107 255-371 446-561 (591)
376 KOG4640 Anaphase-promoting com 92.5 0.7 1.5E-05 53.6 10.1 66 190-289 29-95 (665)
377 PF07995 GSDH: Glucose / Sorbo 92.4 23 0.00049 39.9 27.6 62 533-605 269-330 (331)
378 PF14583 Pectate_lyase22: Olig 92.2 24 0.00051 39.9 26.7 89 36-151 49-140 (386)
379 KOG1008 Uncharacterized conser 92.1 0.049 1.1E-06 62.6 0.5 181 95-335 78-274 (783)
380 KOG4441 Proteins containing BT 91.8 8.7 0.00019 46.7 19.1 215 89-370 286-533 (571)
381 PF02897 Peptidase_S9_N: Proly 91.3 34 0.00075 39.8 29.2 147 7-185 110-284 (414)
382 COG3391 Uncharacterized conser 91.1 32 0.0007 39.6 22.2 193 22-289 78-286 (381)
383 PF00780 CNH: CNH domain; Int 90.9 27 0.00059 37.9 28.4 253 35-346 7-266 (275)
384 PF12894 Apc4_WD40: Anaphase-p 90.6 0.76 1.7E-05 34.7 5.4 33 132-168 11-43 (47)
385 COG3490 Uncharacterized protei 89.9 20 0.00043 38.1 16.6 107 134-276 69-181 (366)
386 KOG2444 WD40 repeat protein [G 89.9 1 2.2E-05 46.1 7.2 102 268-378 70-177 (238)
387 KOG2079 Vacuolar assembly/sort 89.8 3.2 7E-05 51.4 12.5 100 90-212 102-204 (1206)
388 KOG2079 Vacuolar assembly/sort 89.8 1.5 3.2E-05 54.1 9.7 74 306-379 87-161 (1206)
389 PF14870 PSII_BNR: Photosynthe 89.7 20 0.00044 39.4 17.8 155 17-208 144-301 (302)
390 PF02897 Peptidase_S9_N: Proly 89.2 50 0.0011 38.5 28.8 199 259-502 126-357 (414)
391 PF14727 PHTB1_N: PTHB1 N-term 89.0 50 0.0011 38.2 32.7 156 191-378 35-204 (418)
392 KOG2395 Protein involved in va 88.8 3.5 7.7E-05 47.1 11.0 124 122-286 366-500 (644)
393 PF15390 DUF4613: Domain of un 88.4 34 0.00073 40.3 18.6 121 133-288 57-188 (671)
394 PF08728 CRT10: CRT10; InterP 87.9 7.2 0.00016 47.5 13.7 124 534-670 113-246 (717)
395 PF05096 Glu_cyclase_2: Glutam 87.5 44 0.00095 35.8 23.7 184 133-367 45-249 (264)
396 PRK13684 Ycf48-like protein; P 87.2 34 0.00074 38.5 18.3 157 17-211 172-331 (334)
397 TIGR03118 PEPCTERM_chp_1 conse 87.0 50 0.0011 35.9 24.5 249 67-358 24-307 (336)
398 PHA03098 kelch-like protein; P 85.8 24 0.00052 42.8 17.4 104 267-379 389-512 (534)
399 PF08728 CRT10: CRT10; InterP 85.7 21 0.00046 43.6 16.0 163 35-211 49-246 (717)
400 KOG1916 Nuclear protein, conta 85.6 0.25 5.3E-06 59.2 -0.0 106 270-377 306-422 (1283)
401 COG3391 Uncharacterized conser 85.5 76 0.0016 36.5 30.3 261 44-379 11-284 (381)
402 COG3823 Glutamine cyclotransfe 85.1 26 0.00056 35.6 13.5 96 44-170 68-163 (262)
403 PF10313 DUF2415: Uncharacteri 84.7 3.1 6.7E-05 30.6 5.2 34 18-54 1-35 (43)
404 COG3490 Uncharacterized protei 83.9 65 0.0014 34.5 19.1 101 21-154 71-180 (366)
405 KOG3616 Selective LIM binding 83.9 5.6 0.00012 47.0 9.7 109 257-377 15-125 (1636)
406 KOG1896 mRNA cleavage and poly 83.3 1.5E+02 0.0033 38.2 27.8 189 158-380 1005-1215(1366)
407 PF12234 Rav1p_C: RAVE protein 83.1 19 0.00041 43.6 14.0 111 35-164 41-155 (631)
408 COG0823 TolB Periplasmic compo 82.8 35 0.00076 39.7 16.0 168 44-276 173-345 (425)
409 PHA03098 kelch-like protein; P 82.7 38 0.00083 41.1 17.3 25 146-170 342-371 (534)
410 PF05694 SBP56: 56kDa selenium 82.4 1E+02 0.0022 35.5 22.8 228 54-335 52-341 (461)
411 COG0823 TolB Periplasmic compo 82.3 25 0.00055 40.9 14.5 129 5-168 219-361 (425)
412 KOG1898 Splicing factor 3b, su 82.0 54 0.0012 41.2 17.2 106 263-378 940-1048(1205)
413 PF10168 Nup88: Nuclear pore c 81.7 1E+02 0.0023 38.4 20.2 94 580-674 84-183 (717)
414 PF15390 DUF4613: Domain of un 81.7 1.2E+02 0.0026 36.0 29.5 162 18-211 20-186 (671)
415 PHA02790 Kelch-like protein; P 81.6 50 0.0011 39.4 17.2 100 267-378 362-470 (480)
416 PF12234 Rav1p_C: RAVE protein 81.3 35 0.00076 41.4 15.3 114 533-668 39-154 (631)
417 PLN00033 photosystem II stabil 81.0 94 0.002 35.9 18.3 151 257-445 239-396 (398)
418 KOG2280 Vacuolar assembly/sort 79.3 74 0.0016 38.7 16.6 42 133-177 217-258 (829)
419 PF14583 Pectate_lyase22: Olig 79.0 1.2E+02 0.0026 34.4 25.1 31 259-289 83-113 (386)
420 KOG3630 Nuclear pore complex, 77.2 25 0.00053 44.4 12.4 57 255-318 197-253 (1405)
421 KOG1896 mRNA cleavage and poly 76.7 2.4E+02 0.0052 36.5 43.9 156 484-672 1046-1215(1366)
422 PF14781 BBS2_N: Ciliary BBSom 76.7 70 0.0015 30.3 14.2 110 35-169 10-129 (136)
423 PHA02790 Kelch-like protein; P 76.6 1.1E+02 0.0025 36.3 18.2 62 146-211 318-384 (480)
424 KOG3630 Nuclear pore complex, 76.3 24 0.00052 44.5 11.9 131 58-211 93-228 (1405)
425 PF14870 PSII_BNR: Photosynthe 76.0 1.3E+02 0.0028 33.2 31.9 283 9-375 8-301 (302)
426 KOG4499 Ca2+-binding protein R 75.5 1.1E+02 0.0023 31.9 17.6 90 483-589 169-262 (310)
427 KOG1900 Nuclear pore complex, 75.4 26 0.00056 45.1 12.2 144 200-379 96-273 (1311)
428 PF07995 GSDH: Glucose / Sorbo 74.9 1.5E+02 0.0033 33.3 28.0 58 134-196 3-66 (331)
429 PF14761 HPS3_N: Hermansky-Pud 73.1 17 0.00037 37.3 8.3 71 62-154 7-78 (215)
430 KOG2377 Uncharacterized conser 72.1 1.1E+02 0.0023 35.1 14.5 114 17-166 66-186 (657)
431 KOG4499 Ca2+-binding protein R 71.9 1.3E+02 0.0028 31.3 18.9 48 261-318 216-263 (310)
432 PLN00033 photosystem II stabil 71.5 66 0.0014 37.1 13.7 119 9-162 272-396 (398)
433 KOG1916 Nuclear protein, conta 70.7 5.3 0.00012 48.5 4.7 123 127-287 127-266 (1283)
434 PF14655 RAB3GAP2_N: Rab3 GTPa 70.7 45 0.00098 38.4 12.1 52 123-177 298-349 (415)
435 PF07569 Hira: TUP1-like enhan 69.6 19 0.00041 37.7 8.2 75 531-610 18-95 (219)
436 KOG2247 WD40 repeat-containing 69.3 2 4.2E-05 48.6 0.8 150 136-339 38-191 (615)
437 PF10313 DUF2415: Uncharacteri 69.0 15 0.00032 27.1 5.0 31 257-287 1-34 (43)
438 TIGR03075 PQQ_enz_alc_DH PQQ-d 68.6 2.7E+02 0.0059 33.6 30.4 115 36-174 71-198 (527)
439 PF14781 BBS2_N: Ciliary BBSom 66.2 1.1E+02 0.0024 29.0 11.3 112 191-340 8-129 (136)
440 PRK10115 protease 2; Provision 63.6 3.8E+02 0.0083 33.6 23.7 112 18-164 127-254 (686)
441 PF12053 DUF3534: Domain of un 62.6 6 0.00013 37.8 2.5 22 1021-1042 2-27 (145)
442 COG5167 VID27 Protein involved 62.6 88 0.0019 36.2 11.7 59 318-378 573-632 (776)
443 PF07569 Hira: TUP1-like enhan 62.5 45 0.00097 35.0 9.3 87 356-460 18-104 (219)
444 TIGR02604 Piru_Ver_Nterm putat 62.4 1.8E+02 0.0038 33.3 15.1 105 257-368 14-143 (367)
445 PRK13616 lipoprotein LpqB; Pro 61.9 3.8E+02 0.0081 32.9 20.9 67 255-331 495-563 (591)
446 KOG2377 Uncharacterized conser 60.7 3.1E+02 0.0067 31.5 21.0 102 254-363 64-168 (657)
447 PF02333 Phytase: Phytase; In 60.1 3.1E+02 0.0067 31.3 24.3 204 319-554 69-291 (381)
448 TIGR02276 beta_rpt_yvtn 40-res 59.2 38 0.00083 24.3 6.0 28 35-62 3-32 (42)
449 COG4590 ABC-type uncharacteriz 58.0 2.9E+02 0.0062 31.7 14.5 164 252-451 216-389 (733)
450 PF10647 Gmad1: Lipoprotein Lp 56.8 2.8E+02 0.006 29.8 22.0 84 258-343 113-204 (253)
451 PRK13684 Ycf48-like protein; P 55.0 3.5E+02 0.0076 30.4 29.4 115 255-377 213-330 (334)
452 PRK14131 N-acetylneuraminic ac 54.0 3.9E+02 0.0084 30.6 17.7 13 158-170 190-202 (376)
453 PF14727 PHTB1_N: PTHB1 N-term 53.4 4.2E+02 0.0091 30.8 34.4 185 8-211 9-204 (418)
454 TIGR02604 Piru_Ver_Nterm putat 53.0 4E+02 0.0086 30.4 16.6 108 255-367 70-202 (367)
455 KOG1900 Nuclear pore complex, 52.5 1.8E+02 0.0038 38.0 13.3 152 325-505 96-275 (1311)
456 COG3204 Uncharacterized protei 50.6 3.7E+02 0.008 29.3 21.2 180 304-504 81-265 (316)
457 KOG1983 Tomosyn and related SN 50.3 1.3E+02 0.0028 39.2 12.3 66 309-380 199-266 (993)
458 TIGR03606 non_repeat_PQQ dehyd 49.2 3.4E+02 0.0073 31.9 14.3 66 251-319 24-89 (454)
459 PF11715 Nup160: Nucleoporin N 48.8 60 0.0013 39.5 8.9 85 590-674 156-252 (547)
460 COG5167 VID27 Protein involved 48.4 2.2E+02 0.0048 33.1 12.0 126 122-287 500-633 (776)
461 PF12657 TFIIIC_delta: Transcr 48.2 2.3E+02 0.0049 28.4 11.4 40 420-459 86-132 (173)
462 KOG4460 Nuclear pore complex, 48.1 3.6E+02 0.0078 31.6 13.6 40 134-173 167-206 (741)
463 PF12768 Rax2: Cortical protei 47.6 4.1E+02 0.0089 29.0 13.9 63 5-74 17-97 (281)
464 PF12341 DUF3639: Protein of u 46.8 43 0.00092 22.1 3.7 26 581-608 2-27 (27)
465 PF10647 Gmad1: Lipoprotein Lp 43.4 4.4E+02 0.0096 28.2 18.4 113 134-277 67-186 (253)
466 PF02333 Phytase: Phytase; In 42.0 5.8E+02 0.013 29.2 25.5 201 89-337 70-291 (381)
467 COG4247 Phy 3-phytase (myo-ino 41.7 4.5E+02 0.0098 27.8 19.6 37 350-386 57-93 (364)
468 PF11715 Nup160: Nucleoporin N 41.7 78 0.0017 38.5 8.3 34 257-290 215-252 (547)
469 PF11725 AvrE: Pathogenicity f 41.4 1.1E+03 0.024 32.3 19.1 94 348-472 702-803 (1774)
470 PF13449 Phytase-like: Esteras 41.1 5.5E+02 0.012 28.7 18.5 112 256-368 19-166 (326)
471 KOG4460 Nuclear pore complex, 41.0 3.4E+02 0.0075 31.8 12.1 32 258-289 167-201 (741)
472 TIGR03074 PQQ_membr_DH membran 40.4 8.8E+02 0.019 30.8 22.3 186 147-379 194-478 (764)
473 PF12768 Rax2: Cortical protei 40.3 5.3E+02 0.011 28.2 13.9 100 44-170 16-128 (281)
474 PF07676 PD40: WD40-like Beta 39.9 1E+02 0.0022 21.8 5.4 31 253-283 5-38 (39)
475 PF08801 Nucleoporin_N: Nup133 39.4 4.6E+02 0.01 30.5 14.1 28 351-378 192-219 (422)
476 COG4880 Secreted protein conta 39.2 6.4E+02 0.014 28.9 13.8 93 45-167 407-505 (603)
477 TIGR03118 PEPCTERM_chp_1 conse 37.8 5.9E+02 0.013 28.0 24.5 117 259-379 25-171 (336)
478 TIGR03606 non_repeat_PQQ dehyd 37.4 7.5E+02 0.016 29.1 14.7 53 19-77 31-90 (454)
479 PLN02193 nitrile-specifier pro 36.5 7.9E+02 0.017 29.1 18.3 22 533-554 327-352 (470)
480 COG5276 Uncharacterized conser 36.4 6E+02 0.013 27.7 27.3 262 35-377 96-368 (370)
481 PF14269 Arylsulfotran_2: Aryl 35.8 6.4E+02 0.014 27.8 14.0 74 134-211 145-220 (299)
482 PLN02153 epithiospecifier prot 35.7 6.7E+02 0.015 28.1 16.7 24 589-612 249-286 (341)
483 COG5161 SFT1 Pre-mRNA cleavage 35.6 1E+03 0.022 30.1 24.8 244 89-378 874-1167(1319)
484 PF14655 RAB3GAP2_N: Rab3 GTPa 34.7 7.9E+02 0.017 28.6 30.0 42 248-289 299-340 (415)
485 PF12657 TFIIIC_delta: Transcr 33.2 2.3E+02 0.0051 28.3 8.8 33 134-166 87-122 (173)
486 PF14761 HPS3_N: Hermansky-Pud 31.7 6.1E+02 0.013 26.4 12.3 55 313-369 22-80 (215)
487 COG4257 Vgb Streptogramin lyas 30.7 7.2E+02 0.016 26.9 20.7 234 22-343 66-312 (353)
488 KOG1983 Tomosyn and related SN 30.5 6.3E+02 0.014 33.1 14.0 40 8-53 24-66 (993)
489 TIGR01063 gyrA DNA gyrase, A s 30.3 1.3E+03 0.027 29.6 25.5 169 427-611 543-719 (800)
490 PRK05560 DNA gyrase subunit A; 29.1 1.3E+03 0.029 29.5 28.4 259 318-610 498-772 (805)
491 PF11635 Med16: Mediator compl 29.0 1.3E+03 0.028 29.3 22.1 66 308-373 259-345 (753)
492 KOG0783 Uncharacterized conser 28.9 5.7E+02 0.012 31.9 11.8 231 409-665 220-453 (1267)
493 PLN02153 epithiospecifier prot 28.3 8.8E+02 0.019 27.1 23.0 24 146-169 85-113 (341)
494 TIGR03032 conserved hypothetic 27.5 8.8E+02 0.019 26.9 24.7 48 267-325 212-259 (335)
495 COG5276 Uncharacterized conser 25.9 9E+02 0.019 26.5 30.3 198 132-379 86-286 (370)
496 COG4246 Uncharacterized protei 25.1 8.6E+02 0.019 26.0 12.2 73 534-610 144-220 (340)
497 COG5308 NUP170 Nuclear pore co 24.9 2.4E+02 0.0052 35.2 8.0 89 580-674 181-279 (1263)
498 smart00564 PQQ beta-propeller 24.5 1.6E+02 0.0034 19.7 4.1 25 148-172 7-31 (33)
499 PF08954 DUF1900: Domain of un 21.8 1.4E+02 0.003 28.6 4.4 46 812-860 22-67 (136)
500 PF14779 BBS1: Ciliary BBSome 21.6 6E+02 0.013 27.3 9.5 77 131-208 175-255 (257)
No 1
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=7.4e-45 Score=387.59 Aligned_cols=528 Identities=18% Similarity=0.258 Sum_probs=385.5
Q ss_pred CceEEecCCCc-------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC-ee-EEEEeeeCCcceEEEEec
Q 001391 5 DLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG-TL-IRPFQVFHGIRLHGISCN 74 (1088)
Q Consensus 5 ~i~iWdl~~g~-------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg-~~-~~~~~~~~~~~V~~i~~s 74 (1088)
.|.+-++..+. |..+++-..|| |. |.|+|+|. .|.|||||.... .. -.+|+.+.+ +|..|+|+
T Consensus 40 sv~ir~i~~~~~~~iYtEH~~~vtVAkyS--Ps----G~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG-~I~Di~Wd 112 (603)
T KOG0318|consen 40 SVIIRNIDNPASVDIYTEHAHQVTVAKYS--PS----GFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAG-PIKDISWD 112 (603)
T ss_pred EEEEEECCCccceeeeccccceeEEEEeC--CC----ceEEeecCCcCcEEEEeccCcceeeeeeeeeccc-ccccceeC
Confidence 45555665554 77889999999 98 88999999 599999998653 33 346788777 89999999
Q ss_pred ccccccCCCccceeeEEEEECC---C--EEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCC-
Q 001391 75 FINCTEGSVSTRVTFEVALFGE---K--RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNR- 148 (1088)
Q Consensus 75 ~~~~~~~~d~~~~~~~la~~gd---~--~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~- 148 (1088)
.|+ .++++.|+ + .+.+||-. .-+..+.||...|++++|-| ...
T Consensus 113 -------~ds----~RI~avGEGrerfg~~F~~DSG-----------------~SvGei~GhSr~ins~~~Kp---sRPf 161 (603)
T KOG0318|consen 113 -------FDS----KRIAAVGEGRERFGHVFLWDSG-----------------NSVGEITGHSRRINSVDFKP---SRPF 161 (603)
T ss_pred -------CCC----cEEEEEecCccceeEEEEecCC-----------------CccceeeccceeEeeeeccC---CCce
Confidence 787 55555553 2 35555533 34566789999999999998 554
Q ss_pred EEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCC
Q 001391 149 SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAH 228 (1088)
Q Consensus 149 ~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~ 228 (1088)
+++||+.|++|-+|+-...+...++..|.+ .+.+++| +|||.++++.+.||.|.+||-.
T Consensus 162 Ri~T~sdDn~v~ffeGPPFKFk~s~r~Hsk-FV~~VRy---sPDG~~Fat~gsDgki~iyDGk----------------- 220 (603)
T KOG0318|consen 162 RIATGSDDNTVAFFEGPPFKFKSSFREHSK-FVNCVRY---SPDGSRFATAGSDGKIYIYDGK----------------- 220 (603)
T ss_pred EEEeccCCCeEEEeeCCCeeeeeccccccc-ceeeEEE---CCCCCeEEEecCCccEEEEcCC-----------------
Confidence 799999999999998776666666665654 5777777 8999999999999999999988
Q ss_pred CCCCCCceeEecccccceeeeEEEe---CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeee
Q 001391 229 GSSSDFKCFKLQDQQHTAVNLFRLV---GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (1088)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~---gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~ 305 (1088)
+++.+..+. +|++.|++++|+||++.++|+|.|.+++|||+.+.++ .+.+ .+.
T Consensus 221 ----------------tge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~sl-----v~t~---~~~ 276 (603)
T KOG0318|consen 221 ----------------TGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSL-----VSTW---PMG 276 (603)
T ss_pred ----------------CccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccce-----EEEe---ecC
Confidence 666677776 8999999999999999999999999999999999654 2221 111
Q ss_pred c-cCcceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCC
Q 001391 306 G-HNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPG 383 (1088)
Q Consensus 306 ~-h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~ 383 (1088)
. -...-..+-|.+..|++.+.+|+|..++. +..++..+.+|.. +|+++..++++.+|++|+.||.|.-|+.......
T Consensus 277 ~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK-~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 277 STVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNK-SITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred CchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccccc-ceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence 1 11333455566889999999999999999 7789999999998 7999999999999999999999999999543222
Q ss_pred cc--cCCccc---cccCCCcceEEeeeCCCccceeecc---------CCCCceEEEEeccCCeEEEEecCCeEEEEEecc
Q 001391 384 SL--ESHPEA---KEFNGRTEIFSIKIPNFSEQIRLTD---------SKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCD 449 (1088)
Q Consensus 384 ~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~ 449 (1088)
.+ ++|... .......+++++...+.-..+...+ .-.....+++..+++.+++.+..+.|.. +.+
T Consensus 356 ~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~--l~~ 433 (603)
T KOG0318|consen 356 RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVL--LQD 433 (603)
T ss_pred ccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEE--Eec
Confidence 22 222221 1122223444443322221111100 1122346888888875555554555443 222
Q ss_pred CCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEE
Q 001391 450 MDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYW 529 (1088)
Q Consensus 450 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (1088)
.. .+...+......++++.+ ++..+++|+.||.+++|.++.+.+....... .+...+ +..
T Consensus 434 ~~-----~~~~~~~~y~~s~vAv~~--------~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~-----~h~a~i--T~v 493 (603)
T KOG0318|consen 434 QT-----KVSSIPIGYESSAVAVSP--------DGSEVAVGGQDGKVHVYSLSGDELKEEAKLL-----EHRAAI--TDV 493 (603)
T ss_pred CC-----cceeeccccccceEEEcC--------CCCEEEEecccceEEEEEecCCcccceeeee-----cccCCc--eEE
Confidence 21 222333455566666644 4589999999999999999987654332211 111222 235
Q ss_pred eecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeC
Q 001391 530 CKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPL 609 (1088)
Q Consensus 530 ~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~ 609 (1088)
.+|||+.||+++...+.+.+||+..... . ...+ .-|..+|.|++|||++.++|+||-|-+|.||++
T Consensus 494 aySpd~~yla~~Da~rkvv~yd~~s~~~-~------------~~~w-~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 494 AYSPDGAYLAAGDASRKVVLYDVASREV-K------------TNRW-AFHTAKINCVAWSPNNKLVATGSLDTNVIIYSV 559 (603)
T ss_pred EECCCCcEEEEeccCCcEEEEEcccCce-e------------ccee-eeeeeeEEEEEeCCCceEEEeccccceEEEEEc
Confidence 7999999999999999999999986532 1 1111 138999999999999999999999999999999
Q ss_pred CcccccccccccccccCcceeecccccccceeEEEEEeccCCceEEEEecCCCeEEEEEee
Q 001391 610 LRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYD 670 (1088)
Q Consensus 610 ~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~~ 670 (1088)
++... .-..+++|. ..|++|.|. +...++|+|.|.+||+|.+.
T Consensus 560 ~kP~~-------------~i~iknAH~-~gVn~v~wl----de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 560 KKPAK-------------HIIIKNAHL-GGVNSVAWL----DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred cChhh-------------heEeccccc-cCceeEEEe----cCceEEeccCcceeEEeccc
Confidence 97422 134567777 459999999 34789999999999999874
No 2
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.1e-45 Score=404.54 Aligned_cols=584 Identities=16% Similarity=0.222 Sum_probs=435.0
Q ss_pred EEEeccCCCCCCCCEEEEEeCCeEEEEECCCCee-EEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEE
Q 001391 23 LCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTL-IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKL 101 (1088)
Q Consensus 23 v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~-~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~i 101 (1088)
++|+ ++ |..|++..+..|.+-|+++++. +..........+.+++++ ||.. .++.++..+.+++
T Consensus 25 ~~~s--~n----G~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~-------~d~~---~L~~a~rs~llrv 88 (775)
T KOG0319|consen 25 VAWS--SN----GQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALT-------PDEE---VLVTASRSQLLRV 88 (775)
T ss_pred eeEC--CC----CCEEEEecCceEEEEEccCCceecccCCccchhhhheeeec-------CCcc---EEEEeeccceEEE
Confidence 7899 88 9999999988999999999988 554444445579999999 7762 5555666899999
Q ss_pred EEeccCCCCCCCCCCccccccceeeeccC-CCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCcee
Q 001391 102 FELNFELSPNSQYQPETCVNLSLVQSLPR-LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCL 180 (1088)
Q Consensus 102 w~l~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~ 180 (1088)
|++.+ .++++..+. |..+|.-++|+| .+.+|++|+.|+.+++||+..+.+...+.++.+ +
T Consensus 89 ~~L~t---------------gk~irswKa~He~Pvi~ma~~~---~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gG-v 149 (775)
T KOG0319|consen 89 WSLPT---------------GKLIRSWKAIHEAPVITMAFDP---TGTLLATGGADGRVKVWDIKNGYCTHSFKGHGG-V 149 (775)
T ss_pred EEccc---------------chHhHhHhhccCCCeEEEEEcC---CCceEEeccccceEEEEEeeCCEEEEEecCCCc-e
Confidence 99995 467888888 999999999999 899999999999999999999999999987654 5
Q ss_pred EEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEE
Q 001391 181 LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIF 260 (1088)
Q Consensus 181 ~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~ 260 (1088)
+.++.|++. ....+|++|..|+++++||++. ...++..+..|...|+
T Consensus 150 Vssl~F~~~-~~~~lL~sg~~D~~v~vwnl~~--------------------------------~~tcl~~~~~H~S~vt 196 (775)
T KOG0319|consen 150 VSSLLFHPH-WNRWLLASGATDGTVRVWNLND--------------------------------KRTCLHTMILHKSAVT 196 (775)
T ss_pred EEEEEeCCc-cchhheeecCCCceEEEEEccc--------------------------------CchHHHHHHhhhhhee
Confidence 777887654 3457899999999999999981 2225778889999999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-------CCEEEEEeCCCcEEEE
Q 001391 261 RIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-------DSFIITAGEDCTCRVW 333 (1088)
Q Consensus 261 ~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-------~~~l~sg~~Dg~i~vW 333 (1088)
+++|++|+..+++++.|+.+.+||+...+. . ...+-...+-++.+- +.+++++|.+|.+++|
T Consensus 197 sL~~~~d~~~~ls~~RDkvi~vwd~~~~~~--------l---~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~ 265 (775)
T KOG0319|consen 197 SLAFSEDSLELLSVGRDKVIIVWDLVQYKK--------L---KTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYW 265 (775)
T ss_pred eeeeccCCceEEEeccCcEEEEeehhhhhh--------h---heechhhheeeEEEechhcCCcceEEEEecCCceEEEE
Confidence 999999999999999999999999966543 1 111111223333332 3599999999999999
Q ss_pred cC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccce
Q 001391 334 GS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQI 412 (1088)
Q Consensus 334 d~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (1088)
|. .++++...+......+..+...+....++....|..+.++|.+.-.+ .
T Consensus 266 d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i-----------------------------~ 316 (775)
T KOG0319|consen 266 DSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTI-----------------------------V 316 (775)
T ss_pred ecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEE-----------------------------e
Confidence 99 55555444333232377777766666677788899999998753211 0
Q ss_pred eeccCCCCceEEEEecc--CCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEe
Q 001391 413 RLTDSKSEYVRCLHLTS--EDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALG 490 (1088)
Q Consensus 413 ~~~~~~~~~V~~l~~s~--~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g 490 (1088)
..+-+..+.|..++|-. +..+.++|+.+.+..+++ .+..+ .++.+| ...+.++++..+ +.++++|
T Consensus 317 k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~---~~~~c-~ii~GH-~e~vlSL~~~~~--------g~llat~ 383 (775)
T KOG0319|consen 317 KQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTL---PTSYC-QIIPGH-TEAVLSLDVWSS--------GDLLATG 383 (775)
T ss_pred hhhcCCchhheeeeecCCccceEEEEeCCCceEEEec---CCCce-EEEeCc-hhheeeeeeccc--------CcEEEEe
Confidence 11122334577777765 348889999999886543 33333 477777 467888875333 3799999
Q ss_pred cCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCccccee
Q 001391 491 DGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVF 570 (1088)
Q Consensus 491 ~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 570 (1088)
+.|..+++|.++++....... -....+.+..+.+.+....-.+|++++.|+++++|+++..++... ...
T Consensus 384 sKD~svilWr~~~~~~~~~~~----a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~-------~~~ 452 (775)
T KOG0319|consen 384 SKDKSVILWRLNNNCSKSLCV----AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF-------PIV 452 (775)
T ss_pred cCCceEEEEEecCCcchhhhh----hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc-------cce
Confidence 999999999995543221111 111222233343333334557899999999999999987332211 111
Q ss_pred eeeee-ccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeecccccccceeEEEEEecc
Q 001391 571 LVAEF-SSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLR 649 (1088)
Q Consensus 571 l~~~~-~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~ 649 (1088)
+...+ ...|+..|+|++++|+++++||||.|.+.+||+++.. ....+++||.. .|-+|.|+
T Consensus 453 ~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~-------------~l~~vLsGH~R--Gvw~V~Fs--- 514 (775)
T KOG0319|consen 453 LTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL-------------RLLGVLSGHTR--GVWCVSFS--- 514 (775)
T ss_pred ehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc-------------eEEEEeeCCcc--ceEEEEec---
Confidence 11122 3489999999999999999999999999999999843 23678888874 79999999
Q ss_pred CCceEEEEecCCCeEEEEEeecCCcceeeecceeeeeeeeEEEeecCCCccCcccceEEEeeecccEEEEeCCcceEEEE
Q 001391 650 SNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQ 729 (1088)
Q Consensus 650 ~~~~~l~t~g~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~~~~~~~~~~~Gf~~~~~~iwn~~~~~~~~~ 729 (1088)
+....++|+|.|++|+||.+.... +++
T Consensus 515 ~~dq~laT~SgD~TvKIW~is~fS----Clk------------------------------------------------- 541 (775)
T KOG0319|consen 515 KNDQLLATCSGDKTVKIWSISTFS----CLK------------------------------------------------- 541 (775)
T ss_pred cccceeEeccCCceEEEEEeccce----eee-------------------------------------------------
Confidence 566789999999999999996521 110
Q ss_pred EeeCCcCcccccccCCcCCcceEEEEEeccEEEEEeeecccCCCcccccccccccCcceEEEEEEecccccccccccccc
Q 001391 730 IPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSA 809 (1088)
Q Consensus 730 ~~cGg~~r~~~~~~~~~~~~~~~f~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~Hg~eI~~v~~~~~~~~~~~~~~~~~ 809 (1088)
..-+|...|--+.|..+
T Consensus 542 ---------------------------------------------------T~eGH~~aVlra~F~~~------------ 558 (775)
T KOG0319|consen 542 ---------------------------------------------------TFEGHTSAVLRASFIRN------------ 558 (775)
T ss_pred ---------------------------------------------------eecCccceeEeeeeeeC------------
Confidence 01278888888899855
Q ss_pred CCCceEEEeccCCceEEEEEecCCCcccccccccccccCCceeeeEEEeeeeeeccccccCccccccccCccccCCCCcE
Q 001391 810 LNKSSWIATGCEDGTVRLTRYSPGFENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPF 889 (1088)
Q Consensus 810 ~~~~~~i~TG~eD~tIrl~~~~~~~~~~~~~~~~~~H~~gs~v~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (1088)
+.-|++++.||-||||.+..+ ....+|.+|. -.|=++.. +.+.-
T Consensus 559 ---~~qliS~~adGliKlWnikt~----eC~~tlD~H~--DrvWaL~~---------------------------~~~~~ 602 (775)
T KOG0319|consen 559 ---GKQLISAGADGLIKLWNIKTN----ECEMTLDAHN--DRVWALSV---------------------------SPLLD 602 (775)
T ss_pred ---CcEEEeccCCCcEEEEeccch----hhhhhhhhcc--ceeEEEee---------------------------cCccc
Confidence 789999999999999999873 4688999999 77766654 22334
Q ss_pred EEEEecceeEEEEEEEEec
Q 001391 890 LLISVGAKRVLTSWLLRHR 908 (1088)
Q Consensus 890 ll~s~g~d~~i~~W~~~~~ 908 (1088)
.++|||+|++|..|+=..+
T Consensus 603 ~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 603 MFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred eeEecCCCeEEEEeecCcH
Confidence 8999999999999986554
No 3
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=100.00 E-value=6.1e-45 Score=419.16 Aligned_cols=740 Identities=28% Similarity=0.386 Sum_probs=504.6
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g 95 (1088)
+.+++.++++. .+||++|+++.|.+||+.++..+..+..++..++| . +.+ .+-..+
T Consensus 6 ~~~~l~~~~~~--------~~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H----~-------~e~-----~~~l~~ 61 (967)
T KOG0974|consen 6 SLGPLNLPQLV--------SDYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVH----R-------GEG-----KVKLLS 61 (967)
T ss_pred ccccccchhhc--------cceeeecCCCceEEeeCCchhHhhhhhhhcccccc----c-------ccc-----cceecc
Confidence 56777777777 36999999999999999999999888887776777 2 221 111111
Q ss_pred CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEecc
Q 001391 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS 175 (1088)
Q Consensus 96 d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~ 175 (1088)
...|......... . .......+....+||....+.. +...++.+..++.+.+||...+.....+.+
T Consensus 62 ~~~v~~~~~~~v~--~---------~~~~~~~~~~~s~wi~g~~l~~---e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~ 127 (967)
T KOG0974|consen 62 GKIVTCAKSDEVY--V---------KEASNQIIERFSDWIFGAKLFE---ENKKIALVTSRNSLLIRDSKNSSVLSKIQS 127 (967)
T ss_pred ceEEEEEeeccee--e---------cchhhhhhhhccccccccchhh---hcceEEEEEcCceEEEEecccCceehhcCC
Confidence 2222222221100 0 0111122334557888777776 778899999999999999999999999999
Q ss_pred CCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCC
Q 001391 176 PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (1088)
Q Consensus 176 ~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 255 (1088)
++++.++++..+.++++..++++|+..+.|.+|++. ....+. .+.||
T Consensus 128 ~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~--------------------------------~dn~p~-~l~GH 174 (967)
T KOG0974|consen 128 DERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH--------------------------------EDNKPI-RLKGH 174 (967)
T ss_pred CceEEEEeEEEEeccCcEEEEEeccccccEEEEecc--------------------------------ccCCcc-eeccc
Confidence 999999999999999999999999999999999987 122333 78899
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcC
Q 001391 256 EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 256 ~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~ 335 (1088)
++.|+.+.++.||++++|+|+|+++|+|++.+.+. .. .+.++|+++||.++|.++.++|+++|+++++|+.
T Consensus 175 eG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~--------~~-~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 175 EGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV--------LG-CTGFGHSARVWACCFLPNRIITVGEDCTCRVWGV 245 (967)
T ss_pred CCceEEEEEccCCcEEEEEecCcceeeeecccccc--------cC-cccccccceeEEEEeccceeEEeccceEEEEEec
Confidence 99999999999999999999999999999999643 22 2889999999999999889999999999999999
Q ss_pred CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeec
Q 001391 336 DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLT 415 (1088)
Q Consensus 336 ~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (1088)
++..+..+.+|.++.||.++..++...++|++.|+.+++|++.+..... +... ......+.
T Consensus 246 ~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e~---~~~~--------~~~~~s~~-------- 306 (967)
T KOG0974|consen 246 NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLEG---HVEQ--------SSLLSSIV-------- 306 (967)
T ss_pred ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcccccc---ceee--------eeeecchh--------
Confidence 9999999999999999999999999999999999999999995532211 1100 00000000
Q ss_pred cCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCC-CCCcCCCCCeEEEecCCC
Q 001391 416 DSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNE-PKYPCGIDDWVALGDGKG 494 (1088)
Q Consensus 416 ~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~~s~~~~~~la~g~~dg 494 (1088)
......|.....++...+.+..+. +... ....++..+...... +..++..+++++.++..+
T Consensus 307 -----kl~~~~f~k~~~~~~~~~~~~~~~--~~~~-----------~~~~~l~~~~~~s~~~i~~~~~~~~~v~~~~~k~ 368 (967)
T KOG0974|consen 307 -----KLKDDQFVKCDTLLNFANHGGKLS--ILGN-----------KGEKELITFESDSMLRIIFSCTNDDWVAHMSNKG 368 (967)
T ss_pred -----hhcceeeeehHHHHHHHhcCCeEe--eccc-----------ccccceeeeeeccCccceehccccceeeeccCCC
Confidence 000111221112222222222110 0000 111222333322222 344456778999999999
Q ss_pred CEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeee
Q 001391 495 NMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAE 574 (1088)
Q Consensus 495 ~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~ 574 (1088)
.+.+..+.+....+...+..++......+.... .+..+-..+|..++|......+. ..+...+...+.
T Consensus 369 ~~~v~~~~~~~~~~~~~~h~~~s~~~~~~~~~~--------~~~~~~~~~g~~~~r~~~~~~~~----~ad~~~i~~~~~ 436 (967)
T KOG0974|consen 369 DIYVAWHQNTIVITTSSLHRKLSANPISQVCEA--------SYVASKLIDGSIQVRNLSGSLES----FADVLNIRSLKE 436 (967)
T ss_pred cEEEEEeecccCccchhHHHHHhhCcccceeee--------eeehhhccCCcchhhhhhccccc----ccceeEEeeeee
Confidence 998877765433222222212222222222111 11222334666777764432211 112234445556
Q ss_pred eccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeecccccccceeEEEEEeccCCceE
Q 001391 575 FSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTE 654 (1088)
Q Consensus 575 ~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~~~ 654 (1088)
|......+++|+.-.+.+..++.|+.-|++.+|++..+.. ...-+.+ ..|..++++++.+....++..+
T Consensus 437 f~~~~~~~~~~l~~~~~~~~~l~Gs~~g~lv~~~l~~~~~------~~~~~~~-----~~~~~~~~~si~~~~~kdn~~~ 505 (967)
T KOG0974|consen 437 FRLPFAFRIPCLTSVVEDNLILIGSRHGELVLYNLDEPND------DIVLSLS-----RSHELDTGSSITCIRSKDNSAI 505 (967)
T ss_pred eccccCCCCcceecccCcceEEEccCcCcEEEecCCCCCc------cceeecc-----CcccccccccEEEEecCCCcEE
Confidence 6666777899999899889999999999999999987533 1111111 1455578999999998899999
Q ss_pred EEEecCCCeEEEEEeecCCcceeeecceeeeeeeeEEEeecCCCccCcccceEEEeeecccEEEEeCCcceEEEEEeeCC
Q 001391 655 IRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGG 734 (1088)
Q Consensus 655 l~t~g~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~~~~~~~~~~~Gf~~~~~~iwn~~~~~~~~~~~cGg 734 (1088)
+.++++||++.++++.+.......+.....+....+...+++....++.++.+++||.+..|++||++.+.+++...|||
T Consensus 506 ~~~~g~dg~~~~~~~~r~~~~n~~~~L~~~~~~s~v~~g~~~~~~~~~k~n~~~~gf~st~f~l~n~T~~~~i~~~~cGg 585 (967)
T KOG0974|consen 506 FMTTGRDGYWSTIELIRGGTTNYPMELMNKKSFSTVSSGALPSKFINWKGNLLIVGFYSTSFILWNETNETPIFETYCGG 585 (967)
T ss_pred EEEecCCcEEEEEEEecCccccccceeeeeccCCeeeecchhhhhccCCCceEEEEEEeccceEeccccCceeEEEEeCC
Confidence 99999999999999998876656665555555555555566655666678889999999999999999999999999999
Q ss_pred cCcccccccCCcCCcceEEEEEeccEEEEEeeecccCCCcccccccccccCcceEEEEEEeccccccccccccccCCCce
Q 001391 735 WRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSS 814 (1088)
Q Consensus 735 ~~r~~~~~~~~~~~~~~~f~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~Hg~eI~~v~~~~~~~~~~~~~~~~~~~~~~ 814 (1088)
.||.|++... .+ ...+.+.+.+..+++...-... -+..+..+.|++||+++.|.+-++... ......+.
T Consensus 586 ~hr~wal~g~--t~-~~~~~re~~~~~~i~~~~~~~~----~s~~~~nglh~~~irai~~~~~~ttv~----~~~~~~~t 654 (967)
T KOG0974|consen 586 SHRIWALNGS--TD-NQFNFREIASSQLIRQKIDNLS----RNSWISNGLHGREIRAISFSPYSTTVS----LDEHLSGS 654 (967)
T ss_pred eeEEeecCCc--cc-cceeeeecccccEEEEEeeccc----ccccccCCCCCCceeeeEeccccccee----cccCCcce
Confidence 9999999642 22 3344445555556553221111 133566789999999999986321111 12223468
Q ss_pred EEEeccCCceEEEEEecCCCc-ccccccccccccCC-------ceeeeEE---Eeeeee------------eccccccCc
Q 001391 815 WIATGCEDGTVRLTRYSPGFE-NWSSSKLLGEHVGG-------SAVRSIC---FVSEIN------------QISAVVDNV 871 (1088)
Q Consensus 815 ~i~TG~eD~tIrl~~~~~~~~-~~~~~~~~~~H~~g-------s~v~~~~---f~~~~~------------~~~~~~~~~ 871 (1088)
.++++++|+++++........ ...+.+..+.|-.| .+-|.+. ++|+.. +..+- ...
T Consensus 655 ~~~~a~~~~~~~l~sv~~v~~~~~~t~~~~~d~~~g~~~~~~~~gkr~i~~~~~l~~~s~e~~~~~~~s~~~~~~~-~~~ 733 (967)
T KOG0974|consen 655 AVRSASCDGNIKLISVIFVNENLQCTDWYDEDDENGTVYLLTGGGKRKISSENILWRSSHELDEVWDRSLRRHRPV-KYD 733 (967)
T ss_pred eEEeeeccccceeEEEEecccCcccCCCCCcCCCCCcEEEEEeccceeechhhhHhhhhhhhcccChhHhhhcCce-eEC
Confidence 999999999999998865322 22334444444433 3445555 776653 11122 678
Q ss_pred cccccccCcccc---CCCCcEEEEEecceeEEEEEEEEe
Q 001391 872 SEEINRQNGVAE---DKENPFLLISVGAKRVLTSWLLRH 907 (1088)
Q Consensus 872 ~~~~~~~~~~~~---~~~~~~ll~s~g~d~~i~~W~~~~ 907 (1088)
|++||||+++.+ ...+.++..++++++++++|.++.
T Consensus 734 p~~Ri~~v~v~~laq~g~~~lv~s~~s~~~ti~i~~~~~ 772 (967)
T KOG0974|consen 734 PETRIMDVAVCELAQEGLGVLVASLVSSGSTIKIFLYDN 772 (967)
T ss_pred CCccEEEeeeeeecccCCcceEEEEecCCceEEEEeecc
Confidence 999999999955 334558888999999999999984
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.6e-41 Score=370.33 Aligned_cols=511 Identities=15% Similarity=0.165 Sum_probs=389.4
Q ss_pred CCceEEecCCCc--------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEec
Q 001391 4 KDLSEWRLDVGQ--------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (1088)
Q Consensus 4 ~~i~iWdl~~g~--------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s 74 (1088)
.-+++|++.+|+ |.+||.-++|+ |. +.+|++|+ |+.|+|||+..+.+++.|++|.+ .|+.+.|.
T Consensus 84 ~llrv~~L~tgk~irswKa~He~Pvi~ma~~--~~----g~LlAtggaD~~v~VWdi~~~~~th~fkG~gG-vVssl~F~ 156 (775)
T KOG0319|consen 84 QLLRVWSLPTGKLIRSWKAIHEAPVITMAFD--PT----GTLLATGGADGRVKVWDIKNGYCTHSFKGHGG-VVSSLLFH 156 (775)
T ss_pred ceEEEEEcccchHhHhHhhccCCCeEEEEEc--CC----CceEEeccccceEEEEEeeCCEEEEEecCCCc-eEEEEEeC
Confidence 458999999998 88999999999 88 78899988 89999999999999999999888 69999999
Q ss_pred ccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEE
Q 001391 75 FINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG 153 (1088)
Q Consensus 75 ~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg 153 (1088)
|. +.. .+|++++ |+++++||+.... .++..+..|...|++++|.+ |+..++++
T Consensus 157 ~~-----~~~----~lL~sg~~D~~v~vwnl~~~~--------------tcl~~~~~H~S~vtsL~~~~---d~~~~ls~ 210 (775)
T KOG0319|consen 157 PH-----WNR----WLLASGATDGTVRVWNLNDKR--------------TCLHTMILHKSAVTSLAFSE---DSLELLSV 210 (775)
T ss_pred Cc-----cch----hheeecCCCceEEEEEcccCc--------------hHHHHHHhhhhheeeeeecc---CCceEEEe
Confidence 54 221 3444444 8999999998643 36888899999999999999 99999999
Q ss_pred EcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCC--CCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCC
Q 001391 154 CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL--EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSS 231 (1088)
Q Consensus 154 s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~--~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~ 231 (1088)
+.|..+.+||+.+-+....+. ....+-++.+..... .+.++++.+.+|.+++||.++
T Consensus 211 ~RDkvi~vwd~~~~~~l~~lp--~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es------------------- 269 (775)
T KOG0319|consen 211 GRDKVIIVWDLVQYKKLKTLP--LYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSES------------------- 269 (775)
T ss_pred ccCcEEEEeehhhhhhhheec--hhhheeeEEEechhcCCcceEEEEecCCceEEEEeccc-------------------
Confidence 999999999997766665553 222233333322222 256999999999999999982
Q ss_pred CCCceeEecccccceeeeEEEeCC-CCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcc
Q 001391 232 SDFKCFKLQDQQHTAVNLFRLVGH-EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310 (1088)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~gh-~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~ 310 (1088)
+..+...+.. ...+..+...+....++....|..+.++|.++. +..+ .+.|....
T Consensus 270 --------------~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l--------~i~k--~ivG~ndE 325 (775)
T KOG0319|consen 270 --------------GKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDEL--------TIVK--QIVGYNDE 325 (775)
T ss_pred --------------chhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEcccc--------EEeh--hhcCCchh
Confidence 2222221111 223666666676677788888899999998884 4454 67788899
Q ss_pred eEEEEECC---CEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccC
Q 001391 311 VWDCCLTD---SFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLES 387 (1088)
Q Consensus 311 I~~v~~~~---~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~ 387 (1088)
|.+|+|-| ++++.++..+.+|+++..+..-..+.+|.. .|.+++...+|.+|+||+.|.++++|.++..+.+.
T Consensus 326 I~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e-~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~--- 401 (775)
T KOG0319|consen 326 ILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTE-AVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKS--- 401 (775)
T ss_pred heeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchh-heeeeeecccCcEEEEecCCceEEEEEecCCcchh---
Confidence 99999984 899999999999999986665668899998 79999977788999999999999999984321110
Q ss_pred CccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCC--eEEEEecCCeEEEEEeccCCcceeEEe-----ee
Q 001391 388 HPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED--TLYIATNHGYLYHTKLCDMDSVNWNKI-----LQ 460 (1088)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~--~ll~~t~~g~i~~~~~~~~~~~~~~~~-----~~ 460 (1088)
..+....+|...|.+++++..+ .++.+++|..+..|.+..........+ ..
T Consensus 402 ----------------------~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~ 459 (775)
T KOG0319|consen 402 ----------------------LCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTE 459 (775)
T ss_pred ----------------------hhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHH
Confidence 1122234667788899887654 455556777787776655322222111 12
Q ss_pred ecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEE
Q 001391 461 VSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFT 540 (1088)
Q Consensus 461 ~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s 540 (1088)
..++..|.++++.++ +.++|+|+.|.+.+||++++..+.. -..+|.+.+.. ..|++..+.++|
T Consensus 460 ~aHdKdIN~Vaia~n--------dkLiAT~SqDktaKiW~le~~~l~~-------vLsGH~RGvw~--V~Fs~~dq~laT 522 (775)
T KOG0319|consen 460 RAHDKDINCVAIAPN--------DKLIATGSQDKTAKIWDLEQLRLLG-------VLSGHTRGVWC--VSFSKNDQLLAT 522 (775)
T ss_pred HhhcccccceEecCC--------CceEEecccccceeeecccCceEEE-------EeeCCccceEE--EEeccccceeEe
Confidence 335778999998665 4899999999999999998443221 11244444544 347888899999
Q ss_pred ECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccc
Q 001391 541 ADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVA 620 (1088)
Q Consensus 541 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~ 620 (1088)
++.|++|+||.+++ ++|.++|. +|...|.-..|-.+|+.|++++.||-|+||++.++.
T Consensus 523 ~SgD~TvKIW~is~--------------fSClkT~e-GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e------- 580 (775)
T KOG0319|consen 523 CSGDKTVKIWSIST--------------FSCLKTFE-GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE------- 580 (775)
T ss_pred ccCCceEEEEEecc--------------ceeeeeec-CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh-------
Confidence 99999999999983 46777764 899999999999999999999999999999998752
Q ss_pred cccccCcceeecccccccceeEEEEEeccCCceEEEEecCCCeEEEEE
Q 001391 621 LHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLE 668 (1088)
Q Consensus 621 ~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~ 668 (1088)
....+..|. +.|-+++.+ +...+++|+|.||.|.+|.
T Consensus 581 ------C~~tlD~H~--DrvWaL~~~---~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 581 ------CEMTLDAHN--DRVWALSVS---PLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred ------hhhhhhhcc--ceeEEEeec---CccceeEecCCCeEEEEee
Confidence 133444444 678888777 4556899999999999997
No 5
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.2e-40 Score=364.23 Aligned_cols=559 Identities=18% Similarity=0.270 Sum_probs=410.9
Q ss_pred eEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc
Q 001391 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (1088)
Q Consensus 89 ~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~ 168 (1088)
+++++.+...|.+||+.++.. .+.+. ...-...|+|++-+| +.-+||+|.+||.|+||+..++.
T Consensus 35 r~va~~a~E~vn~WdlRtge~------------~~~l~-~~~~k~evt~l~~~~---d~l~lAVGYaDGsVqif~~~s~~ 98 (888)
T KOG0306|consen 35 RAVAVSALEQVNIWDLRTGEI------------EKKLI-LLKKKAEVTCLRSSD---DILLLAVGYADGSVQIFSLESEE 98 (888)
T ss_pred cEEEEeccccEeEEeeecchh------------hhhhh-hhcccceEEEeeccC---CcceEEEEecCceEEeeccCCCc
Confidence 788888889999999997531 01111 112235799999999 88999999999999999999998
Q ss_pred eEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee
Q 001391 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1088)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 248 (1088)
...++.+|... +..+.| +..|.++++|+.|+.|.+||+- ...-
T Consensus 99 ~~~tfngHK~A-Vt~l~f---d~~G~rlaSGskDt~IIvwDlV---------------------------------~E~G 141 (888)
T KOG0306|consen 99 ILITFNGHKAA-VTTLKF---DKIGTRLASGSKDTDIIVWDLV---------------------------------GEEG 141 (888)
T ss_pred eeeeecccccc-eEEEEE---cccCceEeecCCCccEEEEEec---------------------------------ccee
Confidence 88888777653 445555 6789999999999999999998 5677
Q ss_pred eEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCC
Q 001391 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDC 328 (1088)
Q Consensus 249 ~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg 328 (1088)
+.++.||++.|+..-|..+.++++++|.|+.|++||+.+. .++. +...|.+.||.+++.+..+++++.|+
T Consensus 142 l~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tq--------hCf~--Thvd~r~Eiw~l~~~~~~lvt~~~ds 211 (888)
T KOG0306|consen 142 LFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQ--------HCFE--THVDHRGEIWALVLDEKLLVTAGTDS 211 (888)
T ss_pred eEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccc--------eeee--EEecccceEEEEEEecceEEEEecCC
Confidence 8899999999999999998999999999999999999994 5565 88899999999999999999999999
Q ss_pred cEEEEcCC---Cc----------eeEEE-cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCC---------CCcc
Q 001391 329 TCRVWGSD---GK----------QLKMI-KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFL---------PGSL 385 (1088)
Q Consensus 329 ~i~vWd~~---~~----------~~~~~-~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~---------~~~~ 385 (1088)
.+++|++. .+ ...++ +...++ .-.++..++++++++-+.|..+.++.+.... ++..
T Consensus 212 e~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R-~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~ 290 (888)
T KOG0306|consen 212 ELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGR-EINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRA 290 (888)
T ss_pred ceEEEEeecccccccccccceeeccceeeeccCCc-eeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHh
Confidence 99999981 11 11122 223343 4466677888899999999999999884310 0000
Q ss_pred cCCcc------cc---------------------cc----------------CCCcceEEeee--CCCc----cceeecc
Q 001391 386 ESHPE------AK---------------------EF----------------NGRTEIFSIKI--PNFS----EQIRLTD 416 (1088)
Q Consensus 386 ~~~~~------~~---------------------~~----------------~~~~~~~~~~~--~~~~----~~~~~~~ 416 (1088)
+.+.. .+ .+ ++..+.+.+.. ++.+ .......
T Consensus 291 Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~ 370 (888)
T KOG0306|consen 291 KKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIG 370 (888)
T ss_pred hhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeec
Confidence 00000 00 00 01112222211 0000 1113345
Q ss_pred CCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCE
Q 001391 417 SKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNM 496 (1088)
Q Consensus 417 ~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I 496 (1088)
+|...|++++++.+..++++...+.+. +|+..+.++ +.....+ -+.+..+ .|.++.+++|...|.+
T Consensus 371 GHR~dVRsl~vS~d~~~~~Sga~~Sik---iWn~~t~kc--iRTi~~~-y~l~~~F--------vpgd~~Iv~G~k~Gel 436 (888)
T KOG0306|consen 371 GHRSDVRSLCVSSDSILLASGAGESIK---IWNRDTLKC--IRTITCG-YILASKF--------VPGDRYIVLGTKNGEL 436 (888)
T ss_pred cchhheeEEEeecCceeeeecCCCcEE---EEEccCcce--eEEeccc-cEEEEEe--------cCCCceEEEeccCCce
Confidence 778889999999998888888888887 555554443 2222222 3444444 4567999999999999
Q ss_pred EEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeec
Q 001391 497 TIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFS 576 (1088)
Q Consensus 497 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~ 576 (1088)
.+|++....+..... .+.+.++. ...+||++.+++|+.|.+|++|+........ ....-.+.+...-+
T Consensus 437 ~vfdlaS~~l~Eti~-------AHdgaIWs--i~~~pD~~g~vT~saDktVkfWdf~l~~~~~---gt~~k~lsl~~~rt 504 (888)
T KOG0306|consen 437 QVFDLASASLVETIR-------AHDGAIWS--ISLSPDNKGFVTGSADKTVKFWDFKLVVSVP---GTQKKVLSLKHTRT 504 (888)
T ss_pred EEEEeehhhhhhhhh-------ccccceee--eeecCCCCceEEecCCcEEEEEeEEEEeccC---cccceeeeeccceE
Confidence 999998876543221 34444544 3578999999999999999999987332100 00111123322222
Q ss_pred cccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeecccccccceeEEEEEeccCCceEEE
Q 001391 577 SCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIR 656 (1088)
Q Consensus 577 ~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~~~l~ 656 (1088)
......|.|+.+||||++||+|--|.+|+||-+++-.+ .-.+.||. -+|.++.++ +|+..++
T Consensus 505 Lel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF-------------flsLYGHk--LPV~smDIS---~DSkliv 566 (888)
T KOG0306|consen 505 LELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF-------------FLSLYGHK--LPVLSMDIS---PDSKLIV 566 (888)
T ss_pred EeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee-------------eeeecccc--cceeEEecc---CCcCeEE
Confidence 34567899999999999999999999999999986432 22344565 689999999 7889999
Q ss_pred EecCCCeEEEEEeecCCcceeeecceeeeeeeeEEEeecCCCccCcccceEEEeeecccEEEEeCCcceEEEEEeeCCcC
Q 001391 657 STGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGGWR 736 (1088)
Q Consensus 657 t~g~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~~~~~~~~~~~Gf~~~~~~iwn~~~~~~~~~~~cGg~~ 736 (1088)
|+|.|..|++|-++.+.. |
T Consensus 567 TgSADKnVKiWGLdFGDC-------------------------------------------------------------H 585 (888)
T KOG0306|consen 567 TGSADKNVKIWGLDFGDC-------------------------------------------------------------H 585 (888)
T ss_pred eccCCCceEEeccccchh-------------------------------------------------------------h
Confidence 999999999999877521 1
Q ss_pred cccccccCCcCCcceEEEEEeccEEEEEeeecccCCCcccccccccccCcceEEEEEEeccccccccccccccCCCceEE
Q 001391 737 RPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWI 816 (1088)
Q Consensus 737 r~~~~~~~~~~~~~~~f~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~Hg~eI~~v~~~~~~~~~~~~~~~~~~~~~~~i 816 (1088)
++ .-+|...|.+|.|.|. .+++
T Consensus 586 KS-------------------------------------------~fAHdDSvm~V~F~P~---------------~~~F 607 (888)
T KOG0306|consen 586 KS-------------------------------------------FFAHDDSVMSVQFLPK---------------THLF 607 (888)
T ss_pred hh-------------------------------------------hhcccCceeEEEEccc---------------ceeE
Confidence 10 0178999999999976 6899
Q ss_pred EeccCCceEEEEEecCCCcccccccccccccCCceeeeEEEeeeeeeccccccCccccccccCccccCCCCcEEEEEecc
Q 001391 817 ATGCEDGTVRLTRYSPGFENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISVGA 896 (1088)
Q Consensus 817 ~TG~eD~tIrl~~~~~~~~~~~~~~~~~~H~~gs~v~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~s~g~ 896 (1088)
.|+|-|+.||-|+-.. +..+.+|.+|. +-|++++. .+++.+++|++.
T Consensus 608 Ft~gKD~kvKqWDg~k----Fe~iq~L~~H~--~ev~cLav---------------------------~~~G~~vvs~sh 654 (888)
T KOG0306|consen 608 FTCGKDGKVKQWDGEK----FEEIQKLDGHH--SEVWCLAV---------------------------SPNGSFVVSSSH 654 (888)
T ss_pred EEecCcceEEeechhh----hhhheeeccch--heeeeeEE---------------------------cCCCCeEEeccC
Confidence 9999999999998654 66799999999 99999987 345778999999
Q ss_pred eeEEEEEEEEe
Q 001391 897 KRVLTSWLLRH 907 (1088)
Q Consensus 897 d~~i~~W~~~~ 907 (1088)
|.+|++|.-..
T Consensus 655 D~sIRlwE~td 665 (888)
T KOG0306|consen 655 DKSIRLWERTD 665 (888)
T ss_pred CceeEeeeccC
Confidence 99999997644
No 6
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.2e-40 Score=361.93 Aligned_cols=522 Identities=15% Similarity=0.188 Sum_probs=372.2
Q ss_pred CceEEecCCCc---------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEec
Q 001391 5 DLSEWRLDVGQ---------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (1088)
Q Consensus 5 ~i~iWdl~~g~---------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s 74 (1088)
.|-+||+++|+ ...+|+|+.-+ |+ ..+||+|+ ||.|+||+..++..+-+|.+|.. .|..+.|.
T Consensus 44 ~vn~WdlRtge~~~~l~~~~~k~evt~l~~~--~d----~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~-AVt~l~fd 116 (888)
T KOG0306|consen 44 QVNIWDLRTGEIEKKLILLKKKAEVTCLRSS--DD----ILLLAVGYADGSVQIFSLESEEILITFNGHKA-AVTTLKFD 116 (888)
T ss_pred cEeEEeeecchhhhhhhhhcccceEEEeecc--CC----cceEEEEecCceEEeeccCCCceeeeeccccc-ceEEEEEc
Confidence 47899999993 23589999999 88 78889999 89999999999999999999877 79999999
Q ss_pred ccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEE
Q 001391 75 FINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG 153 (1088)
Q Consensus 75 ~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg 153 (1088)
..| .++++++ |+.|.+||+-.+ .-...+.||.+.|+..-|.. +.+.|++.
T Consensus 117 -------~~G----~rlaSGskDt~IIvwDlV~E---------------~Gl~rL~GHkd~iT~~~F~~---~~~~lvS~ 167 (888)
T KOG0306|consen 117 -------KIG----TRLASGSKDTDIIVWDLVGE---------------EGLFRLRGHKDSITQALFLN---GDSFLVSV 167 (888)
T ss_pred -------ccC----ceEeecCCCccEEEEEeccc---------------eeeEEeecchHHHhHHhccC---CCeEEEEe
Confidence 677 6777766 999999999743 34567889999999999987 78899999
Q ss_pred EcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCC
Q 001391 154 CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (1088)
Q Consensus 154 s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~ 233 (1088)
+.|+.|++||+++..+..+.-.+ +..+|++++. +..+++++.|+.+++|++..+......
T Consensus 168 sKDs~iK~WdL~tqhCf~Thvd~-r~Eiw~l~~~-----~~~lvt~~~dse~~v~~L~~~~D~~~~-------------- 227 (888)
T KOG0306|consen 168 SKDSMIKFWDLETQHCFETHVDH-RGEIWALVLD-----EKLLVTAGTDSELKVWELAFEDDEKET-------------- 227 (888)
T ss_pred ccCceEEEEecccceeeeEEecc-cceEEEEEEe-----cceEEEEecCCceEEEEeecccccccc--------------
Confidence 99999999999999888776544 4468888773 378899999999999999521111000
Q ss_pred CceeEecccccceeee-EEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCccc-------------CCC-----
Q 001391 234 FKCFKLQDQQHTAVNL-FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK-------------DSD----- 294 (1088)
Q Consensus 234 ~~~~~~~~~~~~~~~~-~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~-------------~~~----- 294 (1088)
+..+ ..+.. ...+...+....++..+++++++.-+.|..+.++.+.+.... ...
T Consensus 228 ~~~~-------s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~ 300 (888)
T KOG0306|consen 228 NRYI-------STKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENE 300 (888)
T ss_pred cccc-------eeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccc
Confidence 0000 01111 112334555667777888899999999999999998764321 000
Q ss_pred -Cce-----eeeceeeeccCcceEEEEEC-----CCEEEEEeCCCcEEEEcCC--Cce--------eEEEcccCCCCeEE
Q 001391 295 -SIE-----EVGSSVLYGHNARVWDCCLT-----DSFIITAGEDCTCRVWGSD--GKQ--------LKMIKEHIGRGIWR 353 (1088)
Q Consensus 295 -~~~-----~i~~~~~~~h~~~I~~v~~~-----~~~l~sg~~Dg~i~vWd~~--~~~--------~~~~~~h~~~~V~~ 353 (1088)
+.. .+..+...--...|.++.+. ...+++ -.+.++..+.++ ++. --.+.+|.. -|.+
T Consensus 301 ~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~-dVRs 378 (888)
T KOG0306|consen 301 DDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRS-DVRS 378 (888)
T ss_pred cchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchh-heeE
Confidence 000 00000111123456666664 224444 667888888873 221 134678988 4999
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEEcC-CCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCC-
Q 001391 354 CLYDSLSSLLVTAGFDSAIKVHQFQ-AFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED- 431 (1088)
Q Consensus 354 l~~~~dg~~l~tg~~Dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~- 431 (1088)
++++.+...+++|+ .+.+++|+.. .+++++++. +++.+..|.|.+
T Consensus 379 l~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~--------------------------------~y~l~~~Fvpgd~ 425 (888)
T KOG0306|consen 379 LCVSSDSILLASGA-GESIKIWNRDTLKCIRTITC--------------------------------GYILASKFVPGDR 425 (888)
T ss_pred EEeecCceeeeecC-CCcEEEEEccCcceeEEecc--------------------------------ccEEEEEecCCCc
Confidence 99999887666654 5689999995 455544331 357788888865
Q ss_pred eEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCC-----c
Q 001391 432 TLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDV-----H 506 (1088)
Q Consensus 432 ~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~-----~ 506 (1088)
.+++++.+|.+..+++....... ..+ .++..|+.++..++ +..+++|+.|.+|++|++.--. .
T Consensus 426 ~Iv~G~k~Gel~vfdlaS~~l~E---ti~-AHdgaIWsi~~~pD--------~~g~vT~saDktVkfWdf~l~~~~~gt~ 493 (888)
T KOG0306|consen 426 YIVLGTKNGELQVFDLASASLVE---TIR-AHDGAIWSISLSPD--------NKGFVTGSADKTVKFWDFKLVVSVPGTQ 493 (888)
T ss_pred eEEEeccCCceEEEEeehhhhhh---hhh-ccccceeeeeecCC--------CCceEEecCCcEEEEEeEEEEeccCccc
Confidence 66777899999887776654432 223 44678999988554 5889999999999999985211 1
Q ss_pred CcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEE
Q 001391 507 TPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCL 586 (1088)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l 586 (1088)
.....+...-...-+..++. ..+||||++|+++--|.++++|-+++-+ +--. .-+|..+|.||
T Consensus 494 ~k~lsl~~~rtLel~ddvL~--v~~Spdgk~LaVsLLdnTVkVyflDtlK--------------Ffls-LYGHkLPV~sm 556 (888)
T KOG0306|consen 494 KKVLSLKHTRTLELEDDVLC--VSVSPDGKLLAVSLLDNTVKVYFLDTLK--------------FFLS-LYGHKLPVLSM 556 (888)
T ss_pred ceeeeeccceEEeccccEEE--EEEcCCCcEEEEEeccCeEEEEEeccee--------------eeee-ecccccceeEE
Confidence 11111211111122222333 3579999999999999999999988432 1111 12899999999
Q ss_pred EeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeecccccccceeEEEEEeccCCceEEEEecCCCeEEE
Q 001391 587 DASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICY 666 (1088)
Q Consensus 587 ~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~i 666 (1088)
++|||+++|+|||.|.+|+||-++-+. ....+.+|. +.|++|.|. +....+.|+|.||.++.
T Consensus 557 DIS~DSklivTgSADKnVKiWGLdFGD-------------CHKS~fAHd--DSvm~V~F~---P~~~~FFt~gKD~kvKq 618 (888)
T KOG0306|consen 557 DISPDSKLIVTGSADKNVKIWGLDFGD-------------CHKSFFAHD--DSVMSVQFL---PKTHLFFTCGKDGKVKQ 618 (888)
T ss_pred eccCCcCeEEeccCCCceEEeccccch-------------hhhhhhccc--CceeEEEEc---ccceeEEEecCcceEEe
Confidence 999999999999999999999887431 123444444 799999999 56688999999999999
Q ss_pred EEeec
Q 001391 667 LEYDK 671 (1088)
Q Consensus 667 w~~~~ 671 (1088)
||-+.
T Consensus 619 WDg~k 623 (888)
T KOG0306|consen 619 WDGEK 623 (888)
T ss_pred echhh
Confidence 98543
No 7
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=5.1e-39 Score=340.81 Aligned_cols=535 Identities=14% Similarity=0.176 Sum_probs=387.7
Q ss_pred EEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCC--------cEEE
Q 001391 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN--------SIRV 161 (1088)
Q Consensus 90 ~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg--------~V~i 161 (1088)
-++.+-..-+.+++++. ...+.+.+|++.|.|++++| +.-.+++|..-| .+++
T Consensus 78 E~vyfvA~V~Vl~n~ee----------------~~Qr~y~GH~ddikc~~vHP---dri~vatGQ~ag~~g~~~~phvri 138 (626)
T KOG2106|consen 78 ELVYFVAAVGVLYNWEE----------------RSQRHYLGHNDDIKCMAVHP---DRIRVATGQGAGTSGRPLQPHVRI 138 (626)
T ss_pred cEEEEeccEEEEEeehh----------------hhcccccCCCCceEEEeecC---CceeeccCcccccCCCcCCCeeee
Confidence 45555567778888863 33567789999999999999 888899875544 5999
Q ss_pred EEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEE--EecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEe
Q 001391 162 WDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS--GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1088)
Q Consensus 162 Wd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~s--g~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 239 (1088)
||..+...+..+..-+. .+.+++|.+. ..|.+++. -+.+..+.|||++
T Consensus 139 Wdsv~L~TL~V~g~f~~-GV~~vaFsk~-~~G~~l~~vD~s~~h~lSVWdWq---------------------------- 188 (626)
T KOG2106|consen 139 WDSVTLSTLHVIGFFDR-GVTCVAFSKI-NGGSLLCAVDDSNPHMLSVWDWQ---------------------------- 188 (626)
T ss_pred cccccceeeeeeccccc-cceeeeeccc-CCCceEEEecCCCccccchhhch----------------------------
Confidence 99877766655542222 2334444332 34555544 3456788999998
Q ss_pred cccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeecc-CcceEEEEEC-
Q 001391 240 QDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH-NARVWDCCLT- 317 (1088)
Q Consensus 240 ~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h-~~~I~~v~~~- 317 (1088)
.+......+..+..|....|+|.+..++.....+.+.+|+.+.+.. .+... .+.++ ...|.|++|.
T Consensus 189 -----k~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l-----~k~~~--~fek~ekk~Vl~v~F~e 256 (626)
T KOG2106|consen 189 -----KKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSL-----VKRQG--IFEKREKKFVLCVTFLE 256 (626)
T ss_pred -----hhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCce-----EEEee--ccccccceEEEEEEEcC
Confidence 5556666667778899999999887776666778999999988754 33333 23332 2679999999
Q ss_pred CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCC
Q 001391 318 DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNG 396 (1088)
Q Consensus 318 ~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 396 (1088)
+.-+++|..+|.|.||+. ..+..++...|.+ +|.+++...+|.+|- |+.|+.|..||-.-+.++.
T Consensus 257 ngdviTgDS~G~i~Iw~~~~~~~~k~~~aH~g-gv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~------------ 322 (626)
T KOG2106|consen 257 NGDVITGDSGGNILIWSKGTNRISKQVHAHDG-GVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRE------------ 322 (626)
T ss_pred CCCEEeecCCceEEEEeCCCceEEeEeeecCC-ceEEEEEecCccEee-cCccceEEecccccccccc------------
Confidence 678999999999999999 4455555668988 799999999997555 9999999999942221111
Q ss_pred CcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCC
Q 001391 397 RTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNE 476 (1088)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 476 (1088)
+..|+ ..+.||.++-...+ ++++|..+.|+...+.+.- ..+.++| ..+.+.++.+++.
T Consensus 323 ------~elPe----------~~G~iRtv~e~~~d-i~vGTtrN~iL~Gt~~~~f----~~~v~gh-~delwgla~hps~ 380 (626)
T KOG2106|consen 323 ------TELPE----------QFGPIRTVAEGKGD-ILVGTTRNFILQGTLENGF----TLTVQGH-GDELWGLATHPSK 380 (626)
T ss_pred ------ccCch----------hcCCeeEEecCCCc-EEEeeccceEEEeeecCCc----eEEEEec-ccceeeEEcCCCh
Confidence 11122 23567777765544 9999999999877765543 3556676 4589999887654
Q ss_pred CCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCC
Q 001391 477 PKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPF 556 (1088)
Q Consensus 477 ~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~ 556 (1088)
+.+++++.|+.+++|+ .. .+ .+..... .... ...|.|.| .++.|...|...+.|.+...
T Consensus 381 --------~q~~T~gqdk~v~lW~--~~--k~--~wt~~~~----d~~~--~~~fhpsg-~va~Gt~~G~w~V~d~e~~~ 439 (626)
T KOG2106|consen 381 --------NQLLTCGQDKHVRLWN--DH--KL--EWTKIIE----DPAE--CADFHPSG-VVAVGTATGRWFVLDTETQD 439 (626)
T ss_pred --------hheeeccCcceEEEcc--CC--ce--eEEEEec----Ccee--EeeccCcc-eEEEeeccceEEEEecccce
Confidence 8999999999999998 21 22 2221111 1111 14578888 99999999999999998532
Q ss_pred CcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeeccccc
Q 001391 557 SSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHG 636 (1088)
Q Consensus 557 ~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg 636 (1088)
++..-+ . ..++++++|+|+|.+||.|+.|+.|+||.++.+.+ ++.... .+||
T Consensus 440 --------------lv~~~~-d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~---------~y~r~~---k~~g 491 (626)
T KOG2106|consen 440 --------------LVTIHT-D-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR---------KYSRVG---KCSG 491 (626)
T ss_pred --------------eEEEEe-c-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc---------EEEEee---eecC
Confidence 122211 2 78899999999999999999999999999997644 443343 3566
Q ss_pred ccceeEEEEEeccCCceEEEEecCCCeEEEEEeecCCcceeeecceeeeeeeeEEEeecCCCccCcccceEEEeeecccE
Q 001391 637 ISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDF 716 (1088)
Q Consensus 637 ~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~~~~~~~~~~~Gf~~~~~ 716 (1088)
+.||+++|+ .|+.+|.+.+.|..|.+|. .+ ++..... +..+.|. ...+.+||.
T Consensus 492 -s~ithLDwS---~Ds~~~~~~S~d~eiLyW~--~~----~~~~~ts------~kDvkW~-------t~~c~lGF~---- 544 (626)
T KOG2106|consen 492 -SPITHLDWS---SDSQFLVSNSGDYEILYWK--PS----ECKQITS------VKDVKWA-------TYTCTLGFE---- 544 (626)
T ss_pred -ceeEEeeec---CCCceEEeccCceEEEEEc--cc----cCcccce------ecceeee-------eeEEEEEEE----
Confidence 799999999 7889999999999999993 22 1111111 2222121 233666661
Q ss_pred EEEeCCcceEEEEEeeCCcCcccccccCCcCCcceEEEEEeccEEEEEeeecccCCCcccccccccccCcceEEEEEEec
Q 001391 717 IIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVS 796 (1088)
Q Consensus 717 ~iwn~~~~~~~~~~~cGg~~r~~~~~~~~~~~~~~~f~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~Hg~eI~~v~~~~ 796 (1088)
...+.|+..|++++++.
T Consensus 545 ---------------------------------------------------------------v~g~s~~t~i~a~~rs~ 561 (626)
T KOG2106|consen 545 ---------------------------------------------------------------VFGGSDGTDINAVARSH 561 (626)
T ss_pred ---------------------------------------------------------------EecccCCchHHHhhhhh
Confidence 01157899999999986
Q ss_pred cccccccccccccCCCceEEEeccCCceEEEEEecCCCcccccccccccccCCceeeeEEEeeeeeeccccccCcccccc
Q 001391 797 ENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGFENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEIN 876 (1088)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~i~TG~eD~tIrl~~~~~~~~~~~~~~~~~~H~~gs~v~~~~f~~~~~~~~~~~~~~~~~~~ 876 (1088)
. .+++|+|.|.|+|||++||+... ...+..+.+|+ +.|++++|+++
T Consensus 562 ~---------------~~~lA~gdd~g~v~lf~yPc~s~-rA~~he~~ghs--~~vt~V~Fl~~---------------- 607 (626)
T KOG2106|consen 562 C---------------EKLLASGDDFGKVHLFSYPCSSP-RAPSHEYGGHS--SHVTNVAFLCK---------------- 607 (626)
T ss_pred h---------------hhhhhccccCceEEEEccccCCC-cccceeecccc--ceeEEEEEeeC----------------
Confidence 5 68999999999999999998665 67899999999 99999999844
Q ss_pred ccCccccCCCCcEEEEEecceeEEEEEEE
Q 001391 877 RQNGVAEDKENPFLLISVGAKRVLTSWLL 905 (1088)
Q Consensus 877 ~~~~~~~~~~~~~ll~s~g~d~~i~~W~~ 905 (1088)
+..++.|+ .|.+|+.|++
T Consensus 608 ----------d~~li~tg-~D~Si~qW~l 625 (626)
T KOG2106|consen 608 ----------DSHLISTG-KDTSIMQWRL 625 (626)
T ss_pred ----------CceEEecC-CCceEEEEEe
Confidence 45666666 9999999987
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.1e-37 Score=328.51 Aligned_cols=564 Identities=12% Similarity=0.147 Sum_probs=411.3
Q ss_pred CCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCC
Q 001391 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQ 113 (1088)
Q Consensus 35 ~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~ 113 (1088)
+.-++-+.+..|.+-++........+..|.. .+.-..+| |.| .++|+++ .|+||||+....+
T Consensus 30 gd~ilY~nGksv~ir~i~~~~~~~iYtEH~~-~vtVAkyS-------PsG----~yiASGD~sG~vRIWdtt~~~----- 92 (603)
T KOG0318|consen 30 GDNILYTNGKSVIIRNIDNPASVDIYTEHAH-QVTVAKYS-------PSG----FYIASGDVSGKVRIWDTTQKE----- 92 (603)
T ss_pred CCeEEEeCCCEEEEEECCCccceeeeccccc-eeEEEEeC-------CCc----eEEeecCCcCcEEEEeccCcc-----
Confidence 6667777778899999999888888888644 78999999 777 7777776 6999999988543
Q ss_pred CCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE--cCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCC
Q 001391 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC--SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL 191 (1088)
Q Consensus 114 ~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs--~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~ 191 (1088)
.-+-..++...++|.+++|++ |+++|+..+ .++..+++-.++|..+.++.+|.+. +.++.+-+ .
T Consensus 93 --------hiLKnef~v~aG~I~Di~Wd~---ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~-ins~~~Kp--s 158 (603)
T KOG0318|consen 93 --------HILKNEFQVLAGPIKDISWDF---DSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRR-INSVDFKP--S 158 (603)
T ss_pred --------eeeeeeeeecccccccceeCC---CCcEEEEEecCccceeEEEEecCCCccceeecccee-EeeeeccC--C
Confidence 223344556679999999999 888776654 3445555555677778888877664 55666532 2
Q ss_pred CCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEE
Q 001391 192 EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (1088)
Q Consensus 192 ~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l 271 (1088)
..-.+++|+.|++|.+|+-. ..+.-..+..|..-|.++.|+|||.++
T Consensus 159 RPfRi~T~sdDn~v~ffeGP---------------------------------PFKFk~s~r~HskFV~~VRysPDG~~F 205 (603)
T KOG0318|consen 159 RPFRIATGSDDNTVAFFEGP---------------------------------PFKFKSSFREHSKFVNCVRYSPDGSRF 205 (603)
T ss_pred CceEEEeccCCCeEEEeeCC---------------------------------CeeeeecccccccceeeEEECCCCCeE
Confidence 34689999999999999865 455566778899999999999999999
Q ss_pred EEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCC
Q 001391 272 VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIG 348 (1088)
Q Consensus 272 ~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~ 348 (1088)
+|++.||.+.+||-.++.. ...+. .-.+|.+.|.++.|+ ...++|++.|.+++|||+ +.++++++.....
T Consensus 206 at~gsDgki~iyDGktge~-----vg~l~--~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~ 278 (603)
T KOG0318|consen 206 ATAGSDGKIYIYDGKTGEK-----VGELE--DSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST 278 (603)
T ss_pred EEecCCccEEEEcCCCccE-----EEEec--CCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCc
Confidence 9999999999999888643 22222 244899999999999 479999999999999999 7788887754332
Q ss_pred --CCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEE
Q 001391 349 --RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLH 426 (1088)
Q Consensus 349 --~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 426 (1088)
+.--.+.|- ...|++.+.+|+|.+++.... .......+|...|++++
T Consensus 279 v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~-----------------------------~~~~~i~GHnK~ITaLt 327 (603)
T KOG0318|consen 279 VEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP-----------------------------SVLKVISGHNKSITALT 327 (603)
T ss_pred hhceEEEEEEe--CCeEEEEEcCcEEEEecccCC-----------------------------ChhheecccccceeEEE
Confidence 123344454 457999999999999988421 02334456778899999
Q ss_pred eccCC-eEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCC
Q 001391 427 LTSED-TLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDV 505 (1088)
Q Consensus 427 ~s~~~-~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~ 505 (1088)
.++++ .++.+..+|.|..|+...... .++....+...|.+++.... ..+.+.+.|.++++.++....
T Consensus 328 v~~d~~~i~SgsyDG~I~~W~~~~g~~---~~~~g~~h~nqI~~~~~~~~---------~~~~t~g~Dd~l~~~~~~~~~ 395 (603)
T KOG0318|consen 328 VSPDGKTIYSGSYDGHINSWDSGSGTS---DRLAGKGHTNQIKGMAASES---------GELFTIGWDDTLRVISLKDNG 395 (603)
T ss_pred EcCCCCEEEeeccCceEEEEecCCccc---cccccccccceEEEEeecCC---------CcEEEEecCCeEEEEecccCc
Confidence 99988 566677899998766544332 23433445778888887543 467888889999999886554
Q ss_pred cCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEE
Q 001391 506 HTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMC 585 (1088)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~ 585 (1088)
.......+ ...+ ..+ .+...++.+++.+..++.+.+=+..... +.+- .-...+
T Consensus 396 ~t~~~~~~--lg~Q----P~~--lav~~d~~~avv~~~~~iv~l~~~~~~~-------------~~~~------~y~~s~ 448 (603)
T KOG0318|consen 396 YTKSEVVK--LGSQ----PKG--LAVLSDGGTAVVACISDIVLLQDQTKVS-------------SIPI------GYESSA 448 (603)
T ss_pred ccccceee--cCCC----cee--EEEcCCCCEEEEEecCcEEEEecCCcce-------------eecc------ccccce
Confidence 43221111 1111 222 4556666666666555544444343211 1111 233679
Q ss_pred EEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeecccccccceeEEEEEeccCCceEEEEecCCCeEE
Q 001391 586 LDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCIC 665 (1088)
Q Consensus 586 l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~ 665 (1088)
++++|+++.+|+|.+||.|+||.+....+ .....+..|. ..||.|+++ +++.||+++-.-+.+.
T Consensus 449 vAv~~~~~~vaVGG~Dgkvhvysl~g~~l-----------~ee~~~~~h~--a~iT~vayS---pd~~yla~~Da~rkvv 512 (603)
T KOG0318|consen 449 VAVSPDGSEVAVGGQDGKVHVYSLSGDEL-----------KEEAKLLEHR--AAITDVAYS---PDGAYLAAGDASRKVV 512 (603)
T ss_pred EEEcCCCCEEEEecccceEEEEEecCCcc-----------cceeeeeccc--CCceEEEEC---CCCcEEEEeccCCcEE
Confidence 99999999999999999999999986432 1222333355 489999999 7889999999889999
Q ss_pred EEEeecCCcceeeecceeeeeeeeEEEeecCCCccCcccceEEEeeecccEEEEeCCcceEEEEEeeCCcCcccccccCC
Q 001391 666 YLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGGWRRPHSYFLGD 745 (1088)
Q Consensus 666 iw~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~~~~~~~~~~~Gf~~~~~~iwn~~~~~~~~~~~cGg~~r~~~~~~~~ 745 (1088)
+|++..... +
T Consensus 513 ~yd~~s~~~----------~------------------------------------------------------------ 522 (603)
T KOG0318|consen 513 LYDVASREV----------K------------------------------------------------------------ 522 (603)
T ss_pred EEEcccCce----------e------------------------------------------------------------
Confidence 998754310 0
Q ss_pred cCCcceEEEEEeccEEEEEeeecccCCCcccccccccccCcceEEEEEEeccccccccccccccCCCceEEEeccCCceE
Q 001391 746 VPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTV 825 (1088)
Q Consensus 746 ~~~~~~~f~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~Hg~eI~~v~~~~~~~~~~~~~~~~~~~~~~~i~TG~eD~tI 825 (1088)
..+..+|...|+||+.+|+ ..++||||-|++|
T Consensus 523 ---------------------------------~~~w~FHtakI~~~aWsP~---------------n~~vATGSlDt~V 554 (603)
T KOG0318|consen 523 ---------------------------------TNRWAFHTAKINCVAWSPN---------------NKLVATGSLDTNV 554 (603)
T ss_pred ---------------------------------cceeeeeeeeEEEEEeCCC---------------ceEEEeccccceE
Confidence 0112378999999999976 6899999999999
Q ss_pred EEEEecCCCcccccccccccccCCceeeeEEEeeeeeeccccccCccccccccCccccCCCCcEEEEEecceeEEEEEEE
Q 001391 826 RLTRYSPGFENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISVGAKRVLTSWLL 905 (1088)
Q Consensus 826 rl~~~~~~~~~~~~~~~~~~H~~gs~v~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~s~g~d~~i~~W~~ 905 (1088)
-||.+..- .......++|. ..|+.+.|+ ++--|+|.|.|..||+|.+
T Consensus 555 iiysv~kP---~~~i~iknAH~--~gVn~v~wl----------------------------de~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 555 IIYSVKKP---AKHIIIKNAHL--GGVNSVAWL----------------------------DESTVVSSGQDANIKVWNV 601 (603)
T ss_pred EEEEccCh---hhheEeccccc--cCceeEEEe----------------------------cCceEEeccCcceeEEecc
Confidence 99999642 33488899999 449999997 3456999999999999987
Q ss_pred E
Q 001391 906 R 906 (1088)
Q Consensus 906 ~ 906 (1088)
.
T Consensus 602 ~ 602 (603)
T KOG0318|consen 602 T 602 (603)
T ss_pred c
Confidence 4
No 9
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-36 Score=336.21 Aligned_cols=556 Identities=14% Similarity=0.172 Sum_probs=403.1
Q ss_pred CCceEEecCCCc-------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecc
Q 001391 4 KDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNF 75 (1088)
Q Consensus 4 ~~i~iWdl~~g~-------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~ 75 (1088)
+.|.++|+...+ ...-|++++.| |+ |.+|++.. .|...+-+......++.|.- +. +|.+|+||
T Consensus 35 Nrvsv~dLknN~S~Tl~~e~~~NI~~ialS--p~----g~lllavdE~g~~~lvs~~~r~Vlh~f~f-k~-~v~~i~fS- 105 (893)
T KOG0291|consen 35 NRVSVFDLKNNKSYTLPLETRYNITRIALS--PD----GTLLLAVDERGRALLVSLLSRSVLHRFNF-KR-GVGAIKFS- 105 (893)
T ss_pred CEEEEEEccCCcceeEEeecCCceEEEEeC--CC----ceEEEEEcCCCcEEEEecccceeeEEEee-cC-ccceEEEC-
Confidence 568999999876 34569999999 99 88888877 58888888888888888874 44 69999999
Q ss_pred cccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc
Q 001391 76 INCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS 155 (1088)
Q Consensus 76 ~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~ 155 (1088)
|+| .++|++-.+-+.||...... ...|.| +.+.+++.+|-+.|.++.|+. |.++|++|+.
T Consensus 106 ------Png----~~fav~~gn~lqiw~~P~~~--~~~~~p-----Fvl~r~~~g~fddi~si~Ws~---DSr~l~~gsr 165 (893)
T KOG0291|consen 106 ------PNG----KFFAVGCGNLLQIWHAPGEI--KNEFNP-----FVLHRTYLGHFDDITSIDWSD---DSRLLVTGSR 165 (893)
T ss_pred ------CCC----cEEEEEecceeEEEecCcch--hcccCc-----ceEeeeecCCccceeEEEecc---CCceEEeccc
Confidence 888 78999999999999976433 224555 888999999999999999999 9999999999
Q ss_pred CCcEEEEEcCCCce--EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCC-CCCCccCCCCCC
Q 001391 156 DNSIRVWDISNSSI--ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLN-SPEGNHAHGSSS 232 (1088)
Q Consensus 156 Dg~V~iWd~~~~~~--~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~-~~~~~s~~~~~~ 232 (1088)
|-++++|+++..+. ...+.+|...++ .+.| ..+...+++-+.||.+.+|.+.......... .....+.+....
T Consensus 166 D~s~rl~~v~~~k~~~~~~l~gHkd~Vv-acfF---~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~ 241 (893)
T KOG0291|consen 166 DLSARLFGVDGNKNLFTYALNGHKDYVV-ACFF---GANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMD 241 (893)
T ss_pred cceEEEEEeccccccceEeccCCCcceE-EEEe---ccCcceEEEEecCceEEEEEecCCCccccccccccccccccccc
Confidence 99999999987665 344445554433 3333 4567789999999999999987321111000 000000000000
Q ss_pred CCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceE
Q 001391 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312 (1088)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~ 312 (1088)
.++.=+.-..........-+......|++.+|++.-..|+++-..|...+|.+.. ...+. .+.--..+|.
T Consensus 242 ~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~--------f~lih--~LSis~~~I~ 311 (893)
T KOG0291|consen 242 EDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD--------FNLIH--SLSISDQKIL 311 (893)
T ss_pred ccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCC--------ceEEE--Eeecccceee
Confidence 0000000000000111222333447899999999999999999999999999988 34554 4444557899
Q ss_pred EEEEC--CCEEEEEeCC-CcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC-CCCCcccC
Q 001391 313 DCCLT--DSFIITAGED-CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLES 387 (1088)
Q Consensus 313 ~v~~~--~~~l~sg~~D-g~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~-~~~~~~~~ 387 (1088)
.+.|+ |+.|+.|+.. |.+.||+. ...-+-+.++|.. .+.+++++|||++++||+.||.|++||... -+..+
T Consensus 312 t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~-~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vT--- 387 (893)
T KOG0291|consen 312 TVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD-RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVT--- 387 (893)
T ss_pred EEEecccCCEEEEcCCccceEEEEEeeccceeeecccccc-ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEE---
Confidence 99998 8999988866 89999998 5566777889988 599999999999999999999999999843 33333
Q ss_pred CccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCe-EEEEecCCeEEEEEeccCCcceeEEeeeecCCcc
Q 001391 388 HPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT-LYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMP 466 (1088)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~-ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1088)
+..|...|+.+.|+..++ ++.++-+|.+..|++-...+ -+.+..+...+
T Consensus 388 ---------------------------FteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN---fRTft~P~p~Q 437 (893)
T KOG0291|consen 388 ---------------------------FTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN---FRTFTSPEPIQ 437 (893)
T ss_pred ---------------------------eccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce---eeeecCCCcee
Confidence 334557799999998774 55667899988665544433 34556777788
Q ss_pred eEEEecCCCCCCCcCCCCCeEEEecCCC-CEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCC
Q 001391 467 IICMDLLSNEPKYPCGIDDWVALGDGKG-NMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKG 545 (1088)
Q Consensus 467 i~~l~~~~~~~~~s~~~~~~la~g~~dg-~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg 545 (1088)
..|+++.+++ .++..|+.|. .|.+|++.++++... ..+|++.+.+ .+++|++..|++++.|.
T Consensus 438 fscvavD~sG--------elV~AG~~d~F~IfvWS~qTGqllDi-------LsGHEgPVs~--l~f~~~~~~LaS~SWDk 500 (893)
T KOG0291|consen 438 FSCVAVDPSG--------ELVCAGAQDSFEIFVWSVQTGQLLDI-------LSGHEGPVSG--LSFSPDGSLLASGSWDK 500 (893)
T ss_pred eeEEEEcCCC--------CEEEeeccceEEEEEEEeecCeeeeh-------hcCCCCccee--eEEccccCeEEeccccc
Confidence 8899887765 7888888877 899999999886542 2234443433 46999999999999999
Q ss_pred eEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCccccccccccccccc
Q 001391 546 RLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEV 625 (1088)
Q Consensus 546 ~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l 625 (1088)
+|++|++-..... ..++ .+...++.++|.|||+-||++.-||.|.+||....... .+-.....+
T Consensus 501 TVRiW~if~s~~~-------------vEtl--~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~-~~IdgrkD~ 564 (893)
T KOG0291|consen 501 TVRIWDIFSSSGT-------------VETL--EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQV-GSIDGRKDL 564 (893)
T ss_pred eEEEEEeeccCce-------------eeeE--eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceee-ccccchhhc
Confidence 9999998744211 1122 34556999999999999999999999999998864321 001111122
Q ss_pred Ccce----eec---ccccccceeEEEEEeccCCceEEEEecCCCeEEEEEeecCC
Q 001391 626 SPLN----YFK---GAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDR 673 (1088)
Q Consensus 626 ~~~~----~~~---g~hg~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~~ 673 (1088)
.+.. .+. ...+ .+.|.|+++ .|+..|+++|....||+|+++...
T Consensus 565 ~~gR~~~D~~ta~~sa~~-K~Ftti~yS---aDG~~IlAgG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 565 SGGRKETDRITAENSAKG-KTFTTICYS---ADGKCILAGGESNSICIYDVPEGV 615 (893)
T ss_pred cccccccceeehhhcccC-CceEEEEEc---CCCCEEEecCCcccEEEEECchhh
Confidence 2221 111 1233 579999999 788999999999999999998753
No 10
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-39 Score=333.73 Aligned_cols=319 Identities=19% Similarity=0.292 Sum_probs=274.9
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.++|.|++|+ |+ ++.|++|+ |.++|+||+.+..++++.++|.. -|.+++|+ ||| ..||++
T Consensus 114 H~e~Vl~~~fs--p~----g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~-WVlcvaws-------PDg----k~iASG 175 (480)
T KOG0271|consen 114 HGEAVLSVQFS--PT----GSRLVTGSGDTTVRLWDLDTETPLFTCKGHKN-WVLCVAWS-------PDG----KKIASG 175 (480)
T ss_pred CCCcEEEEEec--CC----CceEEecCCCceEEeeccCCCCcceeecCCcc-EEEEEEEC-------CCc----chhhcc
Confidence 67899999999 99 99999999 69999999999999999999776 79999999 898 566665
Q ss_pred C-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEeccc--CCCCEEEEEEcCCcEEEEEcCCCceEE
Q 001391 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC--NGNRSLAIGCSDNSIRVWDISNSSIIL 171 (1088)
Q Consensus 95 g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~--~d~~~lasgs~Dg~V~iWd~~~~~~~~ 171 (1088)
. |++|++||.+++. +..+.|.+|..+|++++|.|.. +..++||+++.||+|+|||+..+.++.
T Consensus 176 ~~dg~I~lwdpktg~--------------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~ 241 (480)
T KOG0271|consen 176 SKDGSIRLWDPKTGQ--------------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVR 241 (480)
T ss_pred ccCCeEEEecCCCCC--------------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEE
Confidence 5 9999999988754 5667889999999999998742 456799999999999999999999999
Q ss_pred EeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEE
Q 001391 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (1088)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1088)
.+.+|... +.++++ ....++++|+.|++|++|+.. .+.....
T Consensus 242 ~lsgHT~~-VTCvrw----GG~gliySgS~DrtIkvw~a~---------------------------------dG~~~r~ 283 (480)
T KOG0271|consen 242 TLSGHTAS-VTCVRW----GGEGLIYSGSQDRTIKVWRAL---------------------------------DGKLCRE 283 (480)
T ss_pred EeccCccc-eEEEEE----cCCceEEecCCCceEEEEEcc---------------------------------chhHHHh
Confidence 99888754 455554 234599999999999999998 7888899
Q ss_pred EeCCCCCEEEEEEc-----------CCC-------------------------CEEEEEECCCcEEEEEcCCCcccCCCC
Q 001391 252 LVGHEGSIFRIEWS-----------SCG-------------------------SKLVSVSDDRSARIWEVRAEYWKDSDS 295 (1088)
Q Consensus 252 ~~gh~~~V~~v~~s-----------p~g-------------------------~~l~s~s~Dg~v~iWd~~~~~~~~~~~ 295 (1088)
++||..+|+.++.+ |.+ ..+++|++|.++.+|+....+
T Consensus 284 lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k------ 357 (480)
T KOG0271|consen 284 LKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK------ 357 (480)
T ss_pred hcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc------
Confidence 99999999999876 323 359999999999999987642
Q ss_pred ceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCE
Q 001391 296 IEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAI 372 (1088)
Q Consensus 296 ~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I 372 (1088)
+++. .+.||..-|..+.|+ +.+|++++.|..|++|+. +|+.+.+|++|-+ +|+.++|+.|.++|++|+.|.++
T Consensus 358 -kpi~--rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~-~VYqvawsaDsRLlVS~SkDsTL 433 (480)
T KOG0271|consen 358 -KPIT--RMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVA-AVYQVAWSADSRLLVSGSKDSTL 433 (480)
T ss_pred -cchh--hhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccc-eeEEEEeccCccEEEEcCCCceE
Confidence 3554 789999999999999 579999999999999999 9999999999999 79999999999999999999999
Q ss_pred EEEEcCCCC-CCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEE
Q 001391 373 KVHQFQAFL-PGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYH 444 (1088)
Q Consensus 373 ~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~ 444 (1088)
++|+++++. .+.+ .+|.+.|.++.|+|||..++++....++.
T Consensus 434 Kvw~V~tkKl~~DL------------------------------pGh~DEVf~vDwspDG~rV~sggkdkv~~ 476 (480)
T KOG0271|consen 434 KVWDVRTKKLKQDL------------------------------PGHADEVFAVDWSPDGQRVASGGKDKVLR 476 (480)
T ss_pred EEEEeeeeeecccC------------------------------CCCCceEEEEEecCCCceeecCCCceEEE
Confidence 999996532 2222 34556789999999999999987777653
No 11
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.1e-38 Score=323.48 Aligned_cols=330 Identities=18% Similarity=0.271 Sum_probs=270.0
Q ss_pred eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCc
Q 001391 55 TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW 134 (1088)
Q Consensus 55 ~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 134 (1088)
++-..+.+|.+ .|.+++|+ |+|+ .++..+||.++|+||+.++ .+..+.++|..|
T Consensus 106 rCssS~~GH~e-~Vl~~~fs-------p~g~---~l~tGsGD~TvR~WD~~Te---------------Tp~~t~KgH~~W 159 (480)
T KOG0271|consen 106 RCSSSIAGHGE-AVLSVQFS-------PTGS---RLVTGSGDTTVRLWDLDTE---------------TPLFTCKGHKNW 159 (480)
T ss_pred eeccccCCCCC-cEEEEEec-------CCCc---eEEecCCCceEEeeccCCC---------------CcceeecCCccE
Confidence 34456667666 79999999 8873 5555567999999999964 567888999999
Q ss_pred EEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeec--CCCCCcEEEEEecCCeEEEEEecc
Q 001391 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWG--DNLEALRIASGTIYNEIIVWKVDW 212 (1088)
Q Consensus 135 I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~--~s~~~~~l~sg~~dg~I~vwd~~~ 212 (1088)
|.|++|+| ||+.||+|+.||+|++||..+++++..-...+...+.++++.+ ..|...+||+++.||.|+|||..
T Consensus 160 VlcvawsP---Dgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~- 235 (480)
T KOG0271|consen 160 VLCVAWSP---DGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK- 235 (480)
T ss_pred EEEEEECC---CcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc-
Confidence 99999999 9999999999999999999999887654444455566776643 24567799999999999999998
Q ss_pred CccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccC
Q 001391 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292 (1088)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~ 292 (1088)
.+..+..+.||+.+|+|+.|--+ .+++|+|.|++|++|+...+.+
T Consensus 236 --------------------------------~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~-- 280 (480)
T KOG0271|consen 236 --------------------------------LGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKL-- 280 (480)
T ss_pred --------------------------------CceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhH--
Confidence 78889999999999999999654 4899999999999999988643
Q ss_pred CCCceeeeceeeeccCcceEEEEEC-------------CC-------------------------EEEEEeCCCcEEEEc
Q 001391 293 SDSIEEVGSSVLYGHNARVWDCCLT-------------DS-------------------------FIITAGEDCTCRVWG 334 (1088)
Q Consensus 293 ~~~~~~i~~~~~~~h~~~I~~v~~~-------------~~-------------------------~l~sg~~Dg~i~vWd 334 (1088)
.. .+.||...|..++.+ +. .+++|+.|.++.+|+
T Consensus 281 ------~r--~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~ 352 (480)
T KOG0271|consen 281 ------CR--ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWN 352 (480)
T ss_pred ------HH--hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEec
Confidence 32 788999999888765 22 499999999999999
Q ss_pred C--CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc-CCCCCCcccCCccccccCCCcceEEeeeCCCccc
Q 001391 335 S--DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF-QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQ 411 (1088)
Q Consensus 335 ~--~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (1088)
. ..+++..+.+|.. -|..+.|+||++++|+++.|.+|++|+- .++.+.++++|.
T Consensus 353 p~~~kkpi~rmtgHq~-lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv---------------------- 409 (480)
T KOG0271|consen 353 PFKSKKPITRMTGHQA-LVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHV---------------------- 409 (480)
T ss_pred ccccccchhhhhchhh-heeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcc----------------------
Confidence 8 6678899999998 6999999999999999999999999998 556677777666
Q ss_pred eeeccCCCCceEEEEeccCCeEEEEecCCe-EEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEe
Q 001391 412 IRLTDSKSEYVRCLHLTSEDTLYIATNHGY-LYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALG 490 (1088)
Q Consensus 412 ~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~-i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g 490 (1088)
..|..++|+.|.+++++++... +. +|+..+.+...=+.+ +..+++++++.++ +..+++|
T Consensus 410 --------~~VYqvawsaDsRLlVS~SkDsTLK---vw~V~tkKl~~DLpG-h~DEVf~vDwspD--------G~rV~sg 469 (480)
T KOG0271|consen 410 --------AAVYQVAWSADSRLLVSGSKDSTLK---VWDVRTKKLKQDLPG-HADEVFAVDWSPD--------GQRVASG 469 (480)
T ss_pred --------ceeEEEEeccCccEEEEcCCCceEE---EEEeeeeeecccCCC-CCceEEEEEecCC--------CceeecC
Confidence 5689999999999888865554 55 444444332222233 4788999999654 5999999
Q ss_pred cCCCCEEEEE
Q 001391 491 DGKGNMTIVR 500 (1088)
Q Consensus 491 ~~dg~I~iw~ 500 (1088)
+.|..+++|.
T Consensus 470 gkdkv~~lw~ 479 (480)
T KOG0271|consen 470 GKDKVLRLWR 479 (480)
T ss_pred CCceEEEeec
Confidence 9999999994
No 12
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.9e-34 Score=315.83 Aligned_cols=468 Identities=14% Similarity=0.205 Sum_probs=353.8
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCC--------eeEEEEeeeCCcceEEEEecccccccCCCcccee
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG--------TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVT 88 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg--------~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~ 88 (1088)
-.+|.|++|| |+ |+++|+|.+..+.||..... .+.+++.+|.. .|.++.|+ .|.
T Consensus 96 k~~v~~i~fS--Pn----g~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fd-di~si~Ws-------~DS---- 157 (893)
T KOG0291|consen 96 KRGVGAIKFS--PN----GKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFD-DITSIDWS-------DDS---- 157 (893)
T ss_pred cCccceEEEC--CC----CcEEEEEecceeEEEecCcchhcccCcceEeeeecCCcc-ceeEEEec-------cCC----
Confidence 4679999999 99 99999999999999997643 23455666555 69999999 676
Q ss_pred eEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC
Q 001391 89 FEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (1088)
Q Consensus 89 ~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~ 167 (1088)
+++++ +.|.+++||.++... .-....+.+|.+.|-.+-|.. +...++|-+.||.+.+|.....
T Consensus 158 r~l~~gsrD~s~rl~~v~~~k-------------~~~~~~l~gHkd~VvacfF~~---~~~~l~tvskdG~l~~W~~~~~ 221 (893)
T KOG0291|consen 158 RLLVTGSRDLSARLFGVDGNK-------------NLFTYALNGHKDYVVACFFGA---NSLDLYTVSKDGALFVWTCDLR 221 (893)
T ss_pred ceEEeccccceEEEEEecccc-------------ccceEeccCCCcceEEEEecc---CcceEEEEecCceEEEEEecCC
Confidence 56666 559999999998543 234567889999999999998 8888999999999999987611
Q ss_pred -----------------------ce-E-----EE----eccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCc
Q 001391 168 -----------------------SI-I-----LE----VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (1088)
Q Consensus 168 -----------------------~~-~-----~~----~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~ 214 (1088)
+. . .. ........+.++++| +...+|++|-..|...++.+.
T Consensus 222 P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH---~~t~~lvvgFssG~f~LyelP--- 295 (893)
T KOG0291|consen 222 PPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFH---KGTNLLVVGFSSGEFGLYELP--- 295 (893)
T ss_pred CcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeecc---CCceEEEEEecCCeeEEEecC---
Confidence 10 0 00 001111334445553 556789999999999999998
Q ss_pred cccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC-CcEEEEEcCCCcccCC
Q 001391 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD-RSARIWEVRAEYWKDS 293 (1088)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D-g~v~iWd~~~~~~~~~ 293 (1088)
....++.+.-....|..++|+..|.+++.++.. |.+-+|+....
T Consensus 296 ------------------------------~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE----- 340 (893)
T KOG0291|consen 296 ------------------------------DFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE----- 340 (893)
T ss_pred ------------------------------CceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc-----
Confidence 677888888888999999999999999987654 89999999884
Q ss_pred CCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCC
Q 001391 294 DSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS 370 (1088)
Q Consensus 294 ~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg 370 (1088)
..+ ...++|..++.+++++ ++++++|++||.|+|||. .|-++.+|..|.. +|+.+.|+..|+.+++.+-||
T Consensus 341 ---sYV--lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts-~Vt~v~f~~~g~~llssSLDG 414 (893)
T KOG0291|consen 341 ---SYV--LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS-GVTAVQFTARGNVLLSSSLDG 414 (893)
T ss_pred ---cee--eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCC-ceEEEEEEecCCEEEEeecCC
Confidence 222 2678999999999999 579999999999999999 8899999999998 799999999999999999999
Q ss_pred CEEEEEcCC-CCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEecc
Q 001391 371 AIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCD 449 (1088)
Q Consensus 371 ~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~ 449 (1088)
+|+.||+.. ...+++.. |+. -...|++..|.|.+++++..... .+.+|+
T Consensus 415 tVRAwDlkRYrNfRTft~------------------P~p-----------~QfscvavD~sGelV~AG~~d~F-~IfvWS 464 (893)
T KOG0291|consen 415 TVRAWDLKRYRNFRTFTS------------------PEP-----------IQFSCVAVDPSGELVCAGAQDSF-EIFVWS 464 (893)
T ss_pred eEEeeeecccceeeeecC------------------CCc-----------eeeeEEEEcCCCCEEEeeccceE-EEEEEE
Confidence 999999943 33333221 211 13578889888988887766552 333777
Q ss_pred CCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEE
Q 001391 450 MDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYW 529 (1088)
Q Consensus 450 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (1088)
.++++...++.|| +.||.++.+.+.+ ..+++|+-|.+|++|++-..... ...+ ...+..+. .
T Consensus 465 ~qTGqllDiLsGH-EgPVs~l~f~~~~--------~~LaS~SWDkTVRiW~if~s~~~-vEtl------~i~sdvl~--v 526 (893)
T KOG0291|consen 465 VQTGQLLDILSGH-EGPVSGLSFSPDG--------SLLASGSWDKTVRIWDIFSSSGT-VETL------EIRSDVLA--V 526 (893)
T ss_pred eecCeeeehhcCC-CCcceeeEEcccc--------CeEEeccccceEEEEEeeccCce-eeeE------eeccceeE--E
Confidence 7777777788888 5789998886654 89999999999999998543211 0011 11111222 5
Q ss_pred eecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcc-cceee-eeeec---cccCceEEEEEeeeCCCEEEEEcCCCcE
Q 001391 530 CKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKT-NNVFL-VAEFS---SCFGARIMCLDASFEDEVLFCGDLRGNL 604 (1088)
Q Consensus 530 ~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~l-~~~~~---~~h~~~It~l~~spdg~~LatGs~dg~I 604 (1088)
.++|+|+-|+++..||.|.+||+....+....+.... ...+. ...++ .......+.+++|+||..|+.|+....|
T Consensus 527 sfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~i 606 (893)
T KOG0291|consen 527 SFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSI 606 (893)
T ss_pred EEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccE
Confidence 6899999999999999999999987654432211000 00000 00111 2345679999999999999999999999
Q ss_pred EEEeCCccc
Q 001391 605 VLFPLLRDL 613 (1088)
Q Consensus 605 ~Iw~~~~~~ 613 (1088)
+||++.++-
T Consensus 607 CiY~v~~~v 615 (893)
T KOG0291|consen 607 CIYDVPEGV 615 (893)
T ss_pred EEEECchhh
Confidence 999998753
No 13
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.9e-37 Score=320.44 Aligned_cols=278 Identities=22% Similarity=0.351 Sum_probs=252.5
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-E
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-F 94 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~ 94 (1088)
..||..+.|| +| ++.|++|+ +|.++||+..++..+.+|.+|.. .|-++.|+|. .++ ..+|+ +
T Consensus 175 ~rPis~~~fS--~d----s~~laT~swsG~~kvW~~~~~~~~~~l~gH~~-~v~~~~fhP~-----~~~----~~lat~s 238 (459)
T KOG0272|consen 175 TRPISGCSFS--RD----SKHLATGSWSGLVKVWSVPQCNLLQTLRGHTS-RVGAAVFHPV-----DSD----LNLATAS 238 (459)
T ss_pred CCcceeeEee--cC----CCeEEEeecCCceeEeecCCcceeEEEecccc-ceeeEEEccC-----CCc----cceeeec
Confidence 4689999999 98 89999999 99999999999999999999887 7999999953 123 45555 4
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.||++++|+++. ..++..+.+|..+|..++|+| +|++|+|++.|.+-++||++++..+....
T Consensus 239 ~Dgtvklw~~~~---------------e~~l~~l~gH~~RVs~VafHP---sG~~L~TasfD~tWRlWD~~tk~ElL~QE 300 (459)
T KOG0272|consen 239 ADGTVKLWKLSQ---------------ETPLQDLEGHLARVSRVAFHP---SGKFLGTASFDSTWRLWDLETKSELLLQE 300 (459)
T ss_pred cCCceeeeccCC---------------CcchhhhhcchhhheeeeecC---CCceeeecccccchhhcccccchhhHhhc
Confidence 599999999985 357888999999999999999 99999999999999999999999888777
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
+|... +++++| .+||.++++|+.|..-+|||++ ++.++..+.|
T Consensus 301 GHs~~-v~~iaf---~~DGSL~~tGGlD~~~RvWDlR---------------------------------tgr~im~L~g 343 (459)
T KOG0272|consen 301 GHSKG-VFSIAF---QPDGSLAATGGLDSLGRVWDLR---------------------------------TGRCIMFLAG 343 (459)
T ss_pred ccccc-cceeEe---cCCCceeeccCccchhheeecc---------------------------------cCcEEEEecc
Confidence 77664 677777 5889999999999999999999 8999999999
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEE
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCR 331 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~ 331 (1088)
|...|.+|+|+|+|-.++|||.|++++|||++..+ ++ +++.+|..-|+.++|. +.+|+|++.|++++
T Consensus 344 H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~--------~l--y~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~k 413 (459)
T KOG0272|consen 344 HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS--------EL--YTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVK 413 (459)
T ss_pred cccceeeEeECCCceEEeecCCCCcEEEeeecccc--------cc--eecccccchhhheEecccCCeEEEEcccCccee
Confidence 99999999999999999999999999999999853 33 4889999999999998 68999999999999
Q ss_pred EEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 001391 332 VWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 332 vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd 376 (1088)
+|.. +..+++.+.+|.++ |.++++++|+..++|++.|+++++|.
T Consensus 414 iWs~~~~~~~ksLaGHe~k-V~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 414 IWSTRTWSPLKSLAGHEGK-VISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eecCCCcccchhhcCCccc-eEEEEeccCCceEEEeccCceeeecc
Confidence 9999 78999999999995 99999999999999999999999995
No 14
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2.8e-32 Score=300.48 Aligned_cols=626 Identities=15% Similarity=0.210 Sum_probs=393.1
Q ss_pred CCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCC
Q 001391 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQY 114 (1088)
Q Consensus 35 ~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~ 114 (1088)
+.++|.|.+..|.+||..+...+.++.+|.. +|.++.+-| +.+....++....|+.|++|.++.+.
T Consensus 25 ~~~vafGa~~~Iav~dp~k~~i~t~l~GH~a-~VnC~~~l~-------~s~~~a~~vsG~sD~~v~lW~l~~~~------ 90 (764)
T KOG1063|consen 25 GGLVAFGAGPAIAVADPEKILIVTTLDGHVA-RVNCVHWLP-------TSEIVAEMVSGDSDGRVILWKLRDEY------ 90 (764)
T ss_pred cceEEecCCceEEEeCcccceeEEeccCCcc-ceEEEEEcc-------cccccceEEEccCCCcEEEEEEeehh------
Confidence 4688889999999999998877888888776 899999984 33212234444459999999999443
Q ss_pred CCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce--EEEeccCC-ceeEEEEeeecCCC
Q 001391 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI--ILEVHSPE-RCLLYSMKLWGDNL 191 (1088)
Q Consensus 115 ~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~--~~~~~~~~-~~~~~s~~~~~~s~ 191 (1088)
...+.++.+|...+.|+.=.+ ..+.+...|+++.+||.+..+. ...+.-.. ..+..++++.+ .+
T Consensus 91 -------~~~i~~~~g~~~~~~cv~a~~-----~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~-~~ 157 (764)
T KOG1063|consen 91 -------LIKIYTIQGHCKECVCVVARS-----SVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALK-NN 157 (764)
T ss_pred -------eEEEEeecCcceeEEEEEeee-----eEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhc-cC
Confidence 677788888766555554322 3333336899999999965552 22221111 11112233332 33
Q ss_pred CCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCC--
Q 001391 192 EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-- 269 (1088)
Q Consensus 192 ~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~-- 269 (1088)
+.-+++.|+.+..|.++.-.. .+.+.+..+.||+++|.+++|...+.
T Consensus 158 ~~~lla~Ggs~~~v~~~s~~~-------------------------------d~f~~v~el~GH~DWIrsl~f~~~~~~~ 206 (764)
T KOG1063|consen 158 KTFLLACGGSKFVVDLYSSSA-------------------------------DSFARVAELEGHTDWIRSLAFARLGGDD 206 (764)
T ss_pred CcEEEEecCcceEEEEeccCC-------------------------------cceeEEEEeeccchhhhhhhhhccCCCc
Confidence 444566777777777776430 14567888999999999999986544
Q ss_pred -EEEEEECCCcEEEEEcCCCcccC----C--------CC----ceeee-----ceeeeccCcceEEEEECC--CEEEEEe
Q 001391 270 -KLVSVSDDRSARIWEVRAEYWKD----S--------DS----IEEVG-----SSVLYGHNARVWDCCLTD--SFIITAG 325 (1088)
Q Consensus 270 -~l~s~s~Dg~v~iWd~~~~~~~~----~--------~~----~~~i~-----~~~~~~h~~~I~~v~~~~--~~l~sg~ 325 (1088)
+|+|+|.|+.||||.+.-..... . .+ ...+. ...+.||...|.++.|++ ..|++++
T Consensus 207 ~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSAS 286 (764)
T KOG1063|consen 207 LLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSAS 286 (764)
T ss_pred EEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecc
Confidence 78999999999999986543110 0 00 00111 014569999999999994 4799999
Q ss_pred CCCcEEEEcCCCc--------eeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCC
Q 001391 326 EDCTCRVWGSDGK--------QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGR 397 (1088)
Q Consensus 326 ~Dg~i~vWd~~~~--------~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 397 (1088)
.|.++.+|..+.+ .+..+.+..+ +.+...|+|+++.+++-|+-|..++|....
T Consensus 287 aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~-GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d------------------ 347 (764)
T KOG1063|consen 287 ADKSMIIWKPDENTGIWVDVVRLGEVGGSAG-GFWGGLWSPNSNVIIAHGRTGGFHLWKTKD------------------ 347 (764)
T ss_pred cCcceEEEecCCccceEEEEEEeeccccccc-ceeeEEEcCCCCEEEEecccCcEEEEeccC------------------
Confidence 9999999998322 1222333334 689999999999999999999999998321
Q ss_pred cceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCe-EEEEEeccCCcceeEEeeeec-CCcceEEEecCCC
Q 001391 398 TEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGY-LYHTKLCDMDSVNWNKILQVS-EGMPIICMDLLSN 475 (1088)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~-i~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~~~~ 475 (1088)
...+. +.....+|.+.|+.++|.|.|.+|.+.+..+ -..+.-| .+...|..+.+.+ ++..+.|+++.+.
T Consensus 348 ~~~w~--------~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w-g~q~~wHEiaRPQiHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 348 KTFWT--------QEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW-GRQQEWHEIARPQIHGYDLTCLSFVNE 418 (764)
T ss_pred cccee--------eccccccccccceeeeecCCCCEEEEeccccceeeeccc-ccccceeeecccccccccceeeehccC
Confidence 11111 1222346667899999999998877765544 2222233 2333477665433 5777888887552
Q ss_pred CCCCcCCCCCeEEEecCCCCEEEEEEcCCC----------------------cCcceee---------------------
Q 001391 476 EPKYPCGIDDWVALGDGKGNMTIVRVVGDV----------------------HTPQLSF--------------------- 512 (1088)
Q Consensus 476 ~~~~s~~~~~~la~g~~dg~I~iw~~~~~~----------------------~~~~~~~--------------------- 512 (1088)
+-.+++|.....+|+|+....- ..|...+
T Consensus 419 --------~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e 490 (764)
T KOG1063|consen 419 --------DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE 490 (764)
T ss_pred --------CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence 2456666666677777643100 0000000
Q ss_pred ---------------------eeeeec-----cccceeeeEEEeecCCCeEEEEECCCC-----eEEEEecCCCCCcccc
Q 001391 513 ---------------------TFTWSA-----GIERQLLGTYWCKSLGHRFIFTADPKG-----RLKLWQLCDPFSSVCY 561 (1088)
Q Consensus 513 ---------------------~~~~~~-----~~~~~~~~~~~~~s~dg~~L~s~~~dg-----~i~vwd~~~~~~~~~~ 561 (1088)
...|+. ++.-.+. -.+.+|+++++++++... .|++|+...-.+.+
T Consensus 491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~--~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~-- 566 (764)
T KOG1063|consen 491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVY--ALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ-- 566 (764)
T ss_pred cccccCchhccCCChHHHHHHhccchhhHHhccCceeEE--EEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh--
Confidence 000000 0000111 135678899999887543 78999987554221
Q ss_pred cCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeeccccccccee
Q 001391 562 ESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVS 641 (1088)
Q Consensus 562 ~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vt 641 (1088)
. ...|...|+.|+|||||++|++.|+|.++.+|...++.. .... ....+ .|. --|-
T Consensus 567 ------------~-L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~------~e~~---fa~~k-~Ht-RIIW 622 (764)
T KOG1063|consen 567 ------------E-LEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIK------DEFR---FACLK-AHT-RIIW 622 (764)
T ss_pred ------------e-ecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccc------hhhh---hcccc-ccc-eEEE
Confidence 1 347999999999999999999999999999999865422 1111 11223 343 2466
Q ss_pred EEEEEeccCCceEEEEecCCCeEEEEEeecCCcceeeecceeeeeeeeEEEeecCCCccCcccceEEEeeecccEEEEeC
Q 001391 642 TLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNL 721 (1088)
Q Consensus 642 sv~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~~~~~~~~~~~Gf~~~~~~iwn~ 721 (1088)
..+|+ +++.+++|+|||..+++|..+..... .......++-...+..+.+.+........++++|+..+.+++|+.
T Consensus 623 dcsW~---pde~~FaTaSRDK~VkVW~~~~~~d~-~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~ 698 (764)
T KOG1063|consen 623 DCSWS---PDEKYFATASRDKKVKVWEEPDLRDK-YISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRR 698 (764)
T ss_pred EcccC---cccceeEEecCCceEEEEeccCchhh-hhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEec
Confidence 77777 67788999999999999999876321 111111111122233333332211222447899999999999996
Q ss_pred CcceEEEEEeeCCcCcccccccCCcCCcceEEEEEeccEEEEEeeecccCCCcccccccccccCcceEEEEEEecccccc
Q 001391 722 ITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQV 801 (1088)
Q Consensus 722 ~~~~~~~~~~cGg~~r~~~~~~~~~~~~~~~f~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~Hg~eI~~v~~~~~~~~~ 801 (1088)
....+..++. .|.+ . .+.-..+.|...|+-+++.|. -
T Consensus 699 ~~~~~~~~~~------~~~~----------------------~------------~~l~~~~~~~~aV~rl~w~p~---~ 735 (764)
T KOG1063|consen 699 KREHRQVTVG------TFNL----------------------D------------TRLCATIGPDSAVNRLLWRPT---C 735 (764)
T ss_pred ccccccccce------eeee----------------------c------------cccccccChHHhhheeEeccc---c
Confidence 5333211110 0000 0 112234588899999999853 1
Q ss_pred ccccccccCCCceEEEeccCCceEEEEEec
Q 001391 802 GANVKKSALNKSSWIATGCEDGTVRLTRYS 831 (1088)
Q Consensus 802 ~~~~~~~~~~~~~~i~TG~eD~tIrl~~~~ 831 (1088)
+. +.....+.+-++.|+||.++||+++.
T Consensus 736 ~~--~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 736 SD--DWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cc--ccccccceeEEeeecccceeEEeecc
Confidence 10 01122345678999999999999864
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4e-33 Score=278.24 Aligned_cols=284 Identities=17% Similarity=0.289 Sum_probs=248.1
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.+.|.++.|+ +| .++|++++ ||.+.|||.-|...++.+..... .|...+|+ |.| ..+|++
T Consensus 54 H~~Ki~~~~ws--~D----sr~ivSaSqDGklIvWDs~TtnK~haipl~s~-WVMtCA~s-------PSg----~~VAcG 115 (343)
T KOG0286|consen 54 HLNKIYAMDWS--TD----SRRIVSASQDGKLIVWDSFTTNKVHAIPLPSS-WVMTCAYS-------PSG----NFVACG 115 (343)
T ss_pred cccceeeeEec--CC----cCeEEeeccCCeEEEEEcccccceeEEecCce-eEEEEEEC-------CCC----CeEEec
Confidence 78999999999 99 88999988 89999999999988888887555 79999999 777 788888
Q ss_pred C-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEe
Q 001391 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1088)
Q Consensus 95 g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~ 173 (1088)
| |+...||++......+ ..+..+.+.+|++.+.|+.|.+ | ..|+|++.|.++.+||+++++.+..+
T Consensus 116 GLdN~Csiy~ls~~d~~g---------~~~v~r~l~gHtgylScC~f~d---D-~~ilT~SGD~TCalWDie~g~~~~~f 182 (343)
T KOG0286|consen 116 GLDNKCSIYPLSTRDAEG---------NVRVSRELAGHTGYLSCCRFLD---D-NHILTGSGDMTCALWDIETGQQTQVF 182 (343)
T ss_pred CcCceeEEEecccccccc---------cceeeeeecCccceeEEEEEcC---C-CceEecCCCceEEEEEcccceEEEEe
Confidence 8 9999999999653111 1355677899999999999986 5 45779999999999999999999999
Q ss_pred ccCCceeEEEEeeecCCC-CCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE
Q 001391 174 HSPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1088)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~-~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1088)
.+|... +.++.+ +| +++.+++|+-|+..++||++ .+...+.|
T Consensus 183 ~GH~gD-V~slsl---~p~~~ntFvSg~cD~~aklWD~R---------------------------------~~~c~qtF 225 (343)
T KOG0286|consen 183 HGHTGD-VMSLSL---SPSDGNTFVSGGCDKSAKLWDVR---------------------------------SGQCVQTF 225 (343)
T ss_pred cCCccc-EEEEec---CCCCCCeEEecccccceeeeecc---------------------------------CcceeEee
Confidence 988765 446665 45 88999999999999999999 78899999
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcE
Q 001391 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTC 330 (1088)
Q Consensus 253 ~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i 330 (1088)
.||+..|++|.|.|+|.-+++||+|++.|+||++..+. +..+.-..-..+|++++|+ |.+|+.|..|.++
T Consensus 226 ~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~--------~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c 297 (343)
T KOG0286|consen 226 EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE--------LAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTC 297 (343)
T ss_pred cccccccceEEEccCCCeeeecCCCceeEEEeecCCcE--------EeeeccCcccCCceeEEEcccccEEEeeecCCce
Confidence 99999999999999999999999999999999998643 3212223334579999998 8999999999999
Q ss_pred EEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 001391 331 RVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 331 ~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd 376 (1088)
.+||. .++.+..+.+|.++ |.++..+|||.-++||+.|.++|||.
T Consensus 298 ~vWDtlk~e~vg~L~GHeNR-vScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 298 NVWDTLKGERVGVLAGHENR-VSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eEeeccccceEEEeeccCCe-eEEEEECCCCcEEEecchhHheeecC
Confidence 99998 89999999999995 99999999999999999999999994
No 16
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-32 Score=295.05 Aligned_cols=461 Identities=15% Similarity=0.222 Sum_probs=324.3
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
++..|.+|.|+ |. ..+++++- .|.|+|||.++...++.|.+-+- +|....|- ... +-+++.+
T Consensus 12 rSdRVKsVd~H--Pt----ePw~la~LynG~V~IWnyetqtmVksfeV~~~-PvRa~kfi-------aRk---nWiv~Gs 74 (794)
T KOG0276|consen 12 RSDRVKSVDFH--PT----EPWILAALYNGDVQIWNYETQTMVKSFEVSEV-PVRAAKFI-------ARK---NWIVTGS 74 (794)
T ss_pred cCCceeeeecC--CC----CceEEEeeecCeeEEEecccceeeeeeeeccc-chhhheee-------ecc---ceEEEec
Confidence 56789999999 98 88888887 89999999999999999998555 89999997 332 2556666
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC-ceEEEe
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS-SIILEV 173 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~-~~~~~~ 173 (1088)
+|..||||+..+ .+.+..+..|++-|.+++.+| ...++.|++.|-+|++||.+.. .+.+++
T Consensus 75 DD~~IrVfnynt---------------~ekV~~FeAH~DyIR~iavHP---t~P~vLtsSDDm~iKlW~we~~wa~~qtf 136 (794)
T KOG0276|consen 75 DDMQIRVFNYNT---------------GEKVKTFEAHSDYIRSIAVHP---TLPYVLTSSDDMTIKLWDWENEWACEQTF 136 (794)
T ss_pred CCceEEEEeccc---------------ceeeEEeeccccceeeeeecC---CCCeEEecCCccEEEEeeccCceeeeeEE
Confidence 789999999986 678999999999999999999 9999999999999999999865 456667
Q ss_pred ccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe
Q 001391 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1088)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1088)
++|+. .+..+++ ++.|.+.+|+++-|++|+||.+. ...+..++.
T Consensus 137 eGH~H-yVMqv~f--nPkD~ntFaS~sLDrTVKVWslg---------------------------------s~~~nfTl~ 180 (794)
T KOG0276|consen 137 EGHEH-YVMQVAF--NPKDPNTFASASLDRTVKVWSLG---------------------------------SPHPNFTLE 180 (794)
T ss_pred cCcce-EEEEEEe--cCCCccceeeeeccccEEEEEcC---------------------------------CCCCceeee
Confidence 77664 3445555 35677899999999999999998 677889999
Q ss_pred CCCCCEEEEEEcCCC--CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC--CEEEEEeCCCc
Q 001391 254 GHEGSIFRIEWSSCG--SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCT 329 (1088)
Q Consensus 254 gh~~~V~~v~~sp~g--~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~--~~l~sg~~Dg~ 329 (1088)
||+..|++|.|-+.| .+|+||++|.+|++||..+. ++++ ++.||...|..++|++ ..++||++||+
T Consensus 181 gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk--------~CV~--TLeGHt~Nvs~v~fhp~lpiiisgsEDGT 250 (794)
T KOG0276|consen 181 GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK--------SCVQ--TLEGHTNNVSFVFFHPELPIIISGSEDGT 250 (794)
T ss_pred ccccCcceEEeccCCCcceEEecCCCceEEEeecchH--------HHHH--HhhcccccceEEEecCCCcEEEEecCCcc
Confidence 999999999998754 79999999999999999995 4555 8999999999999996 68999999999
Q ss_pred EEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc-CCCCCCcccCCccccccCCCcceEEeeeCC
Q 001391 330 CRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF-QAFLPGSLESHPEAKEFNGRTEIFSIKIPN 407 (1088)
Q Consensus 330 i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (1088)
+|+|.. +-+...++...-+ .||+++..+.++.++.|...|.|.+ .+ +......+. ....+-+....++.......
T Consensus 251 vriWhs~Ty~lE~tLn~gle-RvW~I~~~k~~~~i~vG~Deg~i~v-~lgreeP~vsMd-~~gKIiwa~~~ei~~~~~ks 327 (794)
T KOG0276|consen 251 VRIWNSKTYKLEKTLNYGLE-RVWCIAAHKGDGKIAVGFDEGSVTV-KLGREEPAVSMD-SNGKIIWAVHSEIQAVNLKS 327 (794)
T ss_pred EEEecCcceehhhhhhcCCc-eEEEEeecCCCCeEEEeccCCcEEE-EccCCCCceeec-CCccEEEEcCceeeeeecee
Confidence 999998 6666667766666 5999999998888888887777655 34 221111111 11111112222222221111
Q ss_pred Cc------------cceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCC
Q 001391 408 FS------------EQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSN 475 (1088)
Q Consensus 408 ~~------------~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 475 (1088)
.. ..+..+..-+-+...++.+|+|++++.+++|....+.- ..|+.-.-|.. +++.+.
T Consensus 328 ~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTa-----la~RnK~fG~~------~eFvw~ 396 (794)
T KOG0276|consen 328 VGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTA-----LALRNKAFGSG------LEFVWA 396 (794)
T ss_pred ccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEe-----eehhhcccccc------eeEEEc
Confidence 10 00111111223456788999999999999998554321 11211111221 222221
Q ss_pred CCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCC
Q 001391 476 EPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDP 555 (1088)
Q Consensus 476 ~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~ 555 (1088)
.+.+.+++-..++.|+++ .+.+.... +...+ .+...-|..|+....++.+++||.+.+
T Consensus 397 ------~dsne~avRes~~~vki~--knfke~ks--i~~~~------------~~e~i~gg~Llg~~ss~~~~fydW~~~ 454 (794)
T KOG0276|consen 397 ------ADSNEFAVRESNGNVKIF--KNFKEHKS--IRPDM------------SAEGIFGGPLLGVRSSDFLCFYDWESG 454 (794)
T ss_pred ------CCCCeEEEEecCCceEEE--ecceeccc--ccccc------------ceeeecCCceEEEEeCCeEEEEEcccc
Confidence 244778888888999998 33221111 11100 112222344555556677999998755
Q ss_pred CCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcc
Q 001391 556 FSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (1088)
Q Consensus 556 ~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~ 612 (1088)
. ++... .-..-.+.|+.+|.++++++.+. .+|+.++..
T Consensus 455 ~--------------lVrrI----~v~~k~v~w~d~g~lVai~~d~S-fyil~~n~d 492 (794)
T KOG0276|consen 455 E--------------LVRRI----EVTSKHVYWSDNGELVAIAGDDS-FYILKFNAD 492 (794)
T ss_pred e--------------EEEEE----eeccceeEEecCCCEEEEEecCc-eeEEEecHH
Confidence 3 22221 11234678999999999988775 666666654
No 17
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=5.3e-32 Score=297.06 Aligned_cols=522 Identities=13% Similarity=0.125 Sum_probs=347.8
Q ss_pred CceEEecCCCc-------eeeeeEEEEEeccCCCCCCCCEEEEEe-C--CeEEEEECCCCeeEEEEeeeCCcceEEEEec
Q 001391 5 DLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-G--SQVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (1088)
Q Consensus 5 ~i~iWdl~~g~-------~~~~V~~v~fs~~pd~~~~~~~laag~-d--~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s 74 (1088)
+|.++|..+.. +..+++||+|| ++ |+|+|+|. + +.++||+++.-..++.|..|+- .|.+++|+
T Consensus 59 vVVlfn~~~~tQ~hlvnssRk~~t~vAfS--~~----GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY-~vtcvaFs 131 (1080)
T KOG1408|consen 59 VVVLFNVDSCTQSHLVNSSRKPLTCVAFS--QN----GRYVATGECGRTPASKVWSLAFHGVVAEFVDHKY-NVTCVAFS 131 (1080)
T ss_pred EEEEEcccccchhheecccCcceeEEEEc--CC----CcEEEecccCCCccceeeeeccccchhhhhhccc-cceeeeec
Confidence 46778877655 34689999999 99 99999998 4 8999999999889999998776 69999999
Q ss_pred ccccccCCCccceeeEEEEEC---CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEE
Q 001391 75 FINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1088)
Q Consensus 75 ~~~~~~~~d~~~~~~~la~~g---d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la 151 (1088)
|.+ .++++-| |--|.+|++.... ...-..-...|..++|+. ||.+++
T Consensus 132 -------p~~----kyvvSVGsQHDMIVnv~dWr~N~----------------~~asnkiss~Vsav~fsE---dgSYfv 181 (1080)
T KOG1408|consen 132 -------PGN----KYVVSVGSQHDMIVNVNDWRVNS----------------SGASNKISSVVSAVAFSE---DGSYFV 181 (1080)
T ss_pred -------CCC----cEEEeeccccceEEEhhhhhhcc----------------cccccccceeEEEEEEcc---CCceee
Confidence 666 4555544 6678999887432 011113456799999999 999999
Q ss_pred EEEcCCcEEEEEcCCCceEE-------------Eec--------cCCc---eeEEEEee----ecC--------------
Q 001391 152 IGCSDNSIRVWDISNSSIIL-------------EVH--------SPER---CLLYSMKL----WGD-------------- 189 (1088)
Q Consensus 152 sgs~Dg~V~iWd~~~~~~~~-------------~~~--------~~~~---~~~~s~~~----~~~-------------- 189 (1088)
|.+ ...|++|.++.++... .+. +..+ ...|.+.. +.+
T Consensus 182 T~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRT 260 (1080)
T KOG1408|consen 182 TSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRT 260 (1080)
T ss_pred eee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhc
Confidence 987 6789999997665210 000 1100 00111110 000
Q ss_pred ------CCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEE
Q 001391 190 ------NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIE 263 (1088)
Q Consensus 190 ------s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~ 263 (1088)
..+..+|+.|+.+|.|++|+..+-+..+.+...-....+-... . .. .......-.+--....++.
T Consensus 261 TnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~-----~--q~--~~~~s~~~~a~fPD~IA~~ 331 (1080)
T KOG1408|consen 261 TNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANL-----S--QP--EPKNSESSPAIFPDAIACQ 331 (1080)
T ss_pred cccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhc-----c--cc--cccccccCcccCCceeEEE
Confidence 1246789999999999999988654433222111110000000 0 00 0000000111223345778
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-------------CCEEEEEeCCCcE
Q 001391 264 WSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-------------DSFIITAGEDCTC 330 (1088)
Q Consensus 264 ~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-------------~~~l~sg~~Dg~i 330 (1088)
|+|....|.....|..+++||++.-.. .... ..+.-|...||++.-- +..++|++.|++|
T Consensus 332 Fdet~~klscVYndhSlYvWDvrD~~k-----vgk~--~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TI 404 (1080)
T KOG1408|consen 332 FDETTDKLSCVYNDHSLYVWDVRDVNK-----VGKC--SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTI 404 (1080)
T ss_pred ecCCCceEEEEEcCceEEEEecccccc-----ccce--eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcE
Confidence 999999999999999999999998533 2222 3667799999988642 3579999999999
Q ss_pred EEEcCCC----ceeE----------E------------------------EcccCCCCeEEEEEcCCCCEEEEEeCCCCE
Q 001391 331 RVWGSDG----KQLK----------M------------------------IKEHIGRGIWRCLYDSLSSLLVTAGFDSAI 372 (1088)
Q Consensus 331 ~vWd~~~----~~~~----------~------------------------~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I 372 (1088)
|+|++.+ ...+ . ...... ++.+++++|+|++|++|..-|++
T Consensus 405 RlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~-G~R~~~vSp~gqhLAsGDr~Gnl 483 (1080)
T KOG1408|consen 405 RLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRF-GFRALAVSPDGQHLASGDRGGNL 483 (1080)
T ss_pred EEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCccc-ceEEEEECCCcceecccCccCce
Confidence 9999843 2110 0 001112 69999999999999999999999
Q ss_pred EEEEcCC-CCCCcccCCcccc---ccC-------------CCcceEEeeeCCCccceeeccCCCCceEEEEeccCC---e
Q 001391 373 KVHQFQA-FLPGSLESHPEAK---EFN-------------GRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED---T 432 (1088)
Q Consensus 373 ~iwd~~~-~~~~~~~~~~~~~---~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~---~ 432 (1088)
++|++.. ..+..++.|...+ .++ .+.-+...........++.+++|...|+++.|...| +
T Consensus 484 rVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~ 563 (1080)
T KOG1408|consen 484 RVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRK 563 (1080)
T ss_pred EEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceE
Confidence 9999954 3334444444211 111 222222222233334566778899999999999876 5
Q ss_pred EEEEecCCeEEEEEecc-CCcce-eEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcce
Q 001391 433 LYIATNHGYLYHTKLCD-MDSVN-WNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQL 510 (1088)
Q Consensus 433 ll~~t~~g~i~~~~~~~-~~~~~-~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~ 510 (1088)
++.++.+..++ ++... ...+. +.+-.+.-....++.|++.++. .++++++.|.+|+||+++++++..
T Consensus 564 MiscGADksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~--------k~v~t~cQDrnirif~i~sgKq~k-- 632 (1080)
T KOG1408|consen 564 MISCGADKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTS--------KLVVTVCQDRNIRIFDIESGKQVK-- 632 (1080)
T ss_pred EEeccCchhhh-eehhccccCceeccccccccccceEEEeeeCCCc--------ceEEEEecccceEEEeccccceee--
Confidence 55555555543 22222 11121 1111111224568888887764 899999999999999999887543
Q ss_pred eeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeee
Q 001391 511 SFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASF 590 (1088)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~sp 590 (1088)
.++....+++.+.. ....|.|.||++...|.++.++|...+ ++++. ..+|.+.||.+.|++
T Consensus 633 --~FKgs~~~eG~lIK--v~lDPSgiY~atScsdktl~~~Df~sg--------------EcvA~-m~GHsE~VTG~kF~n 693 (1080)
T KOG1408|consen 633 --SFKGSRDHEGDLIK--VILDPSGIYLATSCSDKTLCFVDFVSG--------------ECVAQ-MTGHSEAVTGVKFLN 693 (1080)
T ss_pred --eecccccCCCceEE--EEECCCccEEEEeecCCceEEEEeccc--------------hhhhh-hcCcchheeeeeecc
Confidence 22333344444444 346789999999999999999999865 45555 348999999999999
Q ss_pred CCCEEEEEcCCCcEEEEeCCc
Q 001391 591 EDEVLFCGDLRGNLVLFPLLR 611 (1088)
Q Consensus 591 dg~~LatGs~dg~I~Iw~~~~ 611 (1088)
|-+.|++.+.||.|.||.++.
T Consensus 694 DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 694 DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cchhheeecCCceEEEEECch
Confidence 999999999999999999885
No 18
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.8e-30 Score=276.08 Aligned_cols=504 Identities=14% Similarity=0.189 Sum_probs=356.7
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEeC---------CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccc
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGSG---------SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~d---------~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~ 86 (1088)
|..+|.|++.+ || ...+++|.. +.++|||..+-..++.+..++. .|.+++||+. ..|
T Consensus 103 H~ddikc~~vH--Pd----ri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~-GV~~vaFsk~-----~~G-- 168 (626)
T KOG2106|consen 103 HNDDIKCMAVH--PD----RIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDR-GVTCVAFSKI-----NGG-- 168 (626)
T ss_pred CCCceEEEeec--CC----ceeeccCcccccCCCcCCCeeeecccccceeeeeeccccc-cceeeeeccc-----CCC--
Confidence 56789999999 99 777776652 3699999888777888776666 6999999965 444
Q ss_pred eeeEEEEEC---CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEE
Q 001391 87 VTFEVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWD 163 (1088)
Q Consensus 87 ~~~~la~~g---d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd 163 (1088)
.+++.-+ +..+.+||+..+ ......+.-++.|..+.|+| .+.+++++++ .+.+.+|+
T Consensus 169 --~~l~~vD~s~~h~lSVWdWqk~---------------~~~~~vk~sne~v~~a~FHP--td~nliit~G-k~H~~Fw~ 228 (626)
T KOG2106|consen 169 --SLLCAVDDSNPHMLSVWDWQKK---------------AKLGPVKTSNEVVFLATFHP--TDPNLIITCG-KGHLYFWT 228 (626)
T ss_pred --ceEEEecCCCccccchhhchhh---------------hccCcceeccceEEEEEecc--CCCcEEEEeC-CceEEEEE
Confidence 4444433 467999999853 23334445567899999999 2445666665 78999999
Q ss_pred cCCCceEE---EeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEec
Q 001391 164 ISNSSIIL---EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240 (1088)
Q Consensus 164 ~~~~~~~~---~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 240 (1088)
.+.+.... .++.+++..+.+++| .+++ -+++|..+|.|.||+..
T Consensus 229 ~~~~~l~k~~~~fek~ekk~Vl~v~F---~eng-dviTgDS~G~i~Iw~~~----------------------------- 275 (626)
T KOG2106|consen 229 LRGGSLVKRQGIFEKREKKFVLCVTF---LENG-DVITGDSGGNILIWSKG----------------------------- 275 (626)
T ss_pred ccCCceEEEeeccccccceEEEEEEE---cCCC-CEEeecCCceEEEEeCC-----------------------------
Confidence 99886654 355777788888888 3444 68899999999999987
Q ss_pred ccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCE
Q 001391 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSF 320 (1088)
Q Consensus 241 ~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~ 320 (1088)
..+..+....|.+.|+++....+|..| ||+.|+.|..||-.- +.+++..+....+.|..++-...-
T Consensus 276 ----~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y---------~k~r~~elPe~~G~iRtv~e~~~d 341 (626)
T KOG2106|consen 276 ----TNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNY---------RKLRETELPEQFGPIRTVAEGKGD 341 (626)
T ss_pred ----CceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccc---------cccccccCchhcCCeeEEecCCCc
Confidence 444444555999999999999998755 599999999999322 222222455556677777766333
Q ss_pred EEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcce
Q 001391 321 IITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEI 400 (1088)
Q Consensus 321 l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1088)
|+.|...+.|..=.+.+.--....+|.. ..|.++.+|+.++++|++.|+.+++|+ +.+ ..
T Consensus 342 i~vGTtrN~iL~Gt~~~~f~~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~-~~k------------------~~ 401 (626)
T KOG2106|consen 342 ILVGTTRNFILQGTLENGFTLTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWN-DHK------------------LE 401 (626)
T ss_pred EEEeeccceEEEeeecCCceEEEEeccc-ceeeEEcCCChhheeeccCcceEEEcc-CCc------------------ee
Confidence 7777777777665665544555667877 699999999999999999999999998 221 12
Q ss_pred EEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeec-CCcceEEEecCCCCCCC
Q 001391 401 FSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVS-EGMPIICMDLLSNEPKY 479 (1088)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~~~~~~~~ 479 (1088)
|+... .+++.|+.|.|.|.+.+++..|..+.++.... . +.+.+ ...++.++...++
T Consensus 402 wt~~~-------------~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~---~---lv~~~~d~~~ls~v~ysp~---- 458 (626)
T KOG2106|consen 402 WTKII-------------EDPAECADFHPSGVVAVGTATGRWFVLDTETQ---D---LVTIHTDNEQLSVVRYSPD---- 458 (626)
T ss_pred EEEEe-------------cCceeEeeccCcceEEEeeccceEEEEecccc---e---eEEEEecCCceEEEEEcCC----
Confidence 33221 24689999999998889999998775554332 2 22222 2678889888654
Q ss_pred cCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcc
Q 001391 480 PCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSV 559 (1088)
Q Consensus 480 s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~ 559 (1088)
+.++|+|+.|+.|+||.++.+...-. ..-++. + ..-+...+|+|+++|.+-+.|-.|..|.....++..
T Consensus 459 ----G~~lAvgs~d~~iyiy~Vs~~g~~y~--r~~k~~----g-s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~t 527 (626)
T KOG2106|consen 459 ----GAFLAVGSHDNHIYIYRVSANGRKYS--RVGKCS----G-SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQIT 527 (626)
T ss_pred ----CCEEEEecCCCeEEEEEECCCCcEEE--Eeeeec----C-ceeEEeeecCCCceEEeccCceEEEEEccccCcccc
Confidence 59999999999999999986543211 111111 1 112225689999999999999999999544333322
Q ss_pred cccCCcccceeeeeee---ccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeeccccc
Q 001391 560 CYESSKTNNVFLVAEF---SSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHG 636 (1088)
Q Consensus 560 ~~~~~~~~~~~l~~~~---~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg 636 (1088)
+..-.+=.+..+.-.| ...|...|..++-+.+.++||+|+..|.|++|..+-... -.+...+.+ |+
T Consensus 528 s~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~----------rA~~he~~g-hs 596 (626)
T KOG2106|consen 528 SVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSP----------RAPSHEYGG-HS 596 (626)
T ss_pred eecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCC----------cccceeecc-cc
Confidence 2100000011222222 246788899999999999999999999999999874321 122333334 44
Q ss_pred ccceeEEEEEeccCCceEEEEecCCCeEEEEEe
Q 001391 637 ISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEY 669 (1088)
Q Consensus 637 ~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~ 669 (1088)
..|++|+|+ .+...|+++|.|..|..|++
T Consensus 597 -~~vt~V~Fl---~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 597 -SHVTNVAFL---CKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred -ceeEEEEEe---eCCceEEecCCCceEEEEEe
Confidence 579999999 45577888889999999986
No 19
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.2e-31 Score=261.51 Aligned_cols=280 Identities=21% Similarity=0.321 Sum_probs=236.7
Q ss_pred CCCCCceEEecCCCce-------eeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCe--eEEEEeeeCCcceEEE
Q 001391 1 MGKKDLSEWRLDVGQY-------LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGT--LIRPFQVFHGIRLHGI 71 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~~-------~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~--~~~~~~~~~~~~V~~i 71 (1088)
|.|.+||+|+..+|.. .+.|.++.+. || +++||++....||+||+.++. .+.+|.+|.. .|..+
T Consensus 17 ~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiT--pd----k~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~k-NVtaV 89 (311)
T KOG0315|consen 17 GYDHTIRFWQALTGICSRTIQHPDSQVNRLEIT--PD----KKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTK-NVTAV 89 (311)
T ss_pred cCcceeeeeehhcCeEEEEEecCccceeeEEEc--CC----cchhhhccCCeeEEEEccCCCCCceeEEeccCC-ceEEE
Confidence 6899999999999983 3558999999 99 999999999999999999874 6899999877 59999
Q ss_pred EecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEE
Q 001391 72 SCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL 150 (1088)
Q Consensus 72 ~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~l 150 (1088)
.|- .|| +.+.+++ ||+++|||++... . ...-.|...|+++..+| +...|
T Consensus 90 gF~-------~dg----rWMyTgseDgt~kIWdlR~~~---------------~-qR~~~~~spVn~vvlhp---nQteL 139 (311)
T KOG0315|consen 90 GFQ-------CDG----RWMYTGSEDGTVKIWDLRSLS---------------C-QRNYQHNSPVNTVVLHP---NQTEL 139 (311)
T ss_pred EEe-------ecC----eEEEecCCCceEEEEeccCcc---------------c-chhccCCCCcceEEecC---CcceE
Confidence 998 787 6666665 8999999998532 2 22335779999999999 88999
Q ss_pred EEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCC
Q 001391 151 AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGS 230 (1088)
Q Consensus 151 asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~ 230 (1088)
++|..+|.|++||+.+..+...+-......+.++.. .+||.+++++...|+.++|++-+....
T Consensus 140 is~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v---~~dgsml~a~nnkG~cyvW~l~~~~~~-------------- 202 (311)
T KOG0315|consen 140 ISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTV---MPDGSMLAAANNKGNCYVWRLLNHQTA-------------- 202 (311)
T ss_pred EeecCCCcEEEEEccCCccccccCCCCCcceeeEEE---cCCCcEEEEecCCccEEEEEccCCCcc--------------
Confidence 999999999999999887777766555566777776 588999999999999999998732111
Q ss_pred CCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcc
Q 001391 231 SSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310 (1088)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~ 310 (1088)
....++..++.|++-|....+|||+++|+++|.|.+++||+.++. -... ..+.+|+..
T Consensus 203 -------------s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~--------~kle-~~l~gh~rW 260 (311)
T KOG0315|consen 203 -------------SELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF--------FKLE-LVLTGHQRW 260 (311)
T ss_pred -------------ccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc--------eeeE-EEeecCCce
Confidence 145678889999999999999999999999999999999999884 1222 388999999
Q ss_pred eEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEc
Q 001391 311 VWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYD 357 (1088)
Q Consensus 311 I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~ 357 (1088)
+|+++|+ +.+|+||+.|+++++|++ .++.++...+|.. +..+++.+
T Consensus 261 vWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K-~~vc~~ln 309 (311)
T KOG0315|consen 261 VWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHK-AAVCVALN 309 (311)
T ss_pred EEeeeeccCccEEEecCCCCceeecccccCceeeecCCccc-ccEEEEee
Confidence 9999999 789999999999999999 8899999999987 56666654
No 20
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-31 Score=261.66 Aligned_cols=298 Identities=16% Similarity=0.221 Sum_probs=228.3
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC-----CceEEEeccCCceeEEEEeeecCCCCCcEE
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN-----SSIILEVHSPERCLLYSMKLWGDNLEALRI 196 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~-----~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l 196 (1088)
+.+..++++|+++|..++..+. +.+.+++++.|.++.+|++.. |..++.+.+|+.- +..+.+ ++++.+.
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~--~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~-v~dv~~---s~dg~~a 78 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIK--NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHF-VSDVVL---SSDGNFA 78 (315)
T ss_pred heeeeeecCCCceEEEEEeecC--CCceEEEcccceEEEEEEeccCccccCceeeeeeccceE-ecceEE---ccCCceE
Confidence 5667789999999999999981 457899999999999999864 4557777776543 333433 6899999
Q ss_pred EEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC
Q 001391 197 ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD 276 (1088)
Q Consensus 197 ~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~ 276 (1088)
++++.|+++++||+. +++..+.|.||...|.+++|+||.+.++|||.
T Consensus 79 lS~swD~~lrlWDl~---------------------------------~g~~t~~f~GH~~dVlsva~s~dn~qivSGSr 125 (315)
T KOG0279|consen 79 LSASWDGTLRLWDLA---------------------------------TGESTRRFVGHTKDVLSVAFSTDNRQIVSGSR 125 (315)
T ss_pred EeccccceEEEEEec---------------------------------CCcEEEEEEecCCceEEEEecCCCceeecCCC
Confidence 999999999999999 77889999999999999999999999999999
Q ss_pred CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC----CEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCe
Q 001391 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD----SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGI 351 (1088)
Q Consensus 277 Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~----~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V 351 (1088)
|++|++||+-... .+. ..-..|...|.|++|+| .+|++++.|+++++||+ +-+....+.+|.+ .+
T Consensus 126 DkTiklwnt~g~c--------k~t-~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~-~v 195 (315)
T KOG0279|consen 126 DKTIKLWNTLGVC--------KYT-IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG-YV 195 (315)
T ss_pred cceeeeeeecccE--------EEE-EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccc-cE
Confidence 9999999998742 221 12223478999999984 58999999999999999 5566677899999 69
Q ss_pred EEEEEcCCCCEEEEEeCCCCEEEEEcCC-CCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccC
Q 001391 352 WRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSE 430 (1088)
Q Consensus 352 ~~l~~~~dg~~l~tg~~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 430 (1088)
+.++++|||.++++||.||.+.+||++. +.+.++ .+...|++++|+|+
T Consensus 196 ~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-------------------------------~a~~~v~sl~fspn 244 (315)
T KOG0279|consen 196 NTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-------------------------------EAFDIVNSLCFSPN 244 (315)
T ss_pred EEEEECCCCCEEecCCCCceEEEEEccCCceeEec-------------------------------cCCCeEeeEEecCC
Confidence 9999999999999999999999999953 221111 12346788888876
Q ss_pred CeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcce
Q 001391 431 DTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQL 510 (1088)
Q Consensus 431 ~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~ 510 (1088)
...++...... |+||+++++......
T Consensus 245 rywL~~at~~s------------------------------------------------------IkIwdl~~~~~v~~l 270 (315)
T KOG0279|consen 245 RYWLCAATATS------------------------------------------------------IKIWDLESKAVVEEL 270 (315)
T ss_pred ceeEeeccCCc------------------------------------------------------eEEEeccchhhhhhc
Confidence 54444432222 455555444443333
Q ss_pred eeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecC
Q 001391 511 SFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLC 553 (1088)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~ 553 (1088)
.+.......+...+....+++++||+.|++|-.|+.|++|.+.
T Consensus 271 ~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 271 KLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 3332222222333445557899999999999999999999875
No 21
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.1e-32 Score=285.86 Aligned_cols=287 Identities=18% Similarity=0.287 Sum_probs=242.2
Q ss_pred eeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCC
Q 001391 124 LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN 203 (1088)
Q Consensus 124 ~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg 203 (1088)
+...-.|-+.+|..+.|++ |+..||||+.+|.+++|+..+...+.++.+|... +..+.|++.. ++..+|+++.||
T Consensus 167 l~~SQ~gd~rPis~~~fS~---ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~-v~~~~fhP~~-~~~~lat~s~Dg 241 (459)
T KOG0272|consen 167 LVCSQVGDTRPISGCSFSR---DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSR-VGAAVFHPVD-SDLNLATASADG 241 (459)
T ss_pred hhhhhccCCCcceeeEeec---CCCeEEEeecCCceeEeecCCcceeEEEeccccc-eeeEEEccCC-CccceeeeccCC
Confidence 3344446778999999999 9999999999999999999999889998887653 4566665442 577999999999
Q ss_pred eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEE
Q 001391 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIW 283 (1088)
Q Consensus 204 ~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iW 283 (1088)
++++|++. ...++..+.||...|..++|+|+|++|+|+|.|.+-|+|
T Consensus 242 tvklw~~~---------------------------------~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlW 288 (459)
T KOG0272|consen 242 TVKLWKLS---------------------------------QETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLW 288 (459)
T ss_pred ceeeeccC---------------------------------CCcchhhhhcchhhheeeeecCCCceeeecccccchhhc
Confidence 99999998 668899999999999999999999999999999999999
Q ss_pred EcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCC
Q 001391 284 EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS 360 (1088)
Q Consensus 284 d~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg 360 (1088)
|+.++.. + ....||...|.+++|. |.+++|||.|..-||||+ +|+++..+.+|.. +|.+++|+|+|
T Consensus 289 D~~tk~E--------l--L~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNG 357 (459)
T KOG0272|consen 289 DLETKSE--------L--LLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNG 357 (459)
T ss_pred ccccchh--------h--HhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccc-ceeeEeECCCc
Confidence 9999632 2 2668999999999998 799999999999999999 9999999999998 79999999999
Q ss_pred CEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEecc-CCeEEEEe-c
Q 001391 361 SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTS-EDTLYIAT-N 438 (1088)
Q Consensus 361 ~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~~~ll~~t-~ 438 (1088)
..|+|||.|++++|||++... .++.+..|..-|..++|+| .|.+++++ -
T Consensus 358 y~lATgs~Dnt~kVWDLR~r~-----------------------------~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 358 YHLATGSSDNTCKVWDLRMRS-----------------------------ELYTIPAHSNLVSQVKYSPQEGYFLVTASY 408 (459)
T ss_pred eEEeecCCCCcEEEeeecccc-----------------------------cceecccccchhhheEecccCCeEEEEccc
Confidence 999999999999999996421 1334456667899999998 55666654 4
Q ss_pred CCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEE
Q 001391 439 HGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (1088)
Q Consensus 439 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~ 500 (1088)
|+.+ ++|...+....+.+.|| +..|.++++.++ ++.+++++.|.++++|.
T Consensus 409 D~t~---kiWs~~~~~~~ksLaGH-e~kV~s~Dis~d--------~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 409 DNTV---KIWSTRTWSPLKSLAGH-EGKVISLDISPD--------SQAIATSSFDRTIKLWR 458 (459)
T ss_pred Ccce---eeecCCCcccchhhcCC-ccceEEEEeccC--------CceEEEeccCceeeecc
Confidence 4444 47777765555667777 567999999554 58999999999999995
No 22
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-29 Score=283.64 Aligned_cols=310 Identities=19% Similarity=0.307 Sum_probs=248.1
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
.+..|.+++|+ |. +.+++++- .|.|++||..=+.++..|..|++ +|.+++|+ |.+ .+++++
T Consensus 8 kSsRvKglsFH--P~----rPwILtslHsG~IQlWDYRM~tli~rFdeHdG-pVRgv~FH-------~~q----plFVSG 69 (1202)
T KOG0292|consen 8 KSSRVKGLSFH--PK----RPWILTSLHSGVIQLWDYRMGTLIDRFDEHDG-PVRGVDFH-------PTQ----PLFVSG 69 (1202)
T ss_pred ccccccceecC--CC----CCEEEEeecCceeeeehhhhhhHHhhhhccCC-ccceeeec-------CCC----CeEEec
Confidence 35679999999 98 99999998 79999999999999999999888 89999999 665 677777
Q ss_pred C-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEe
Q 001391 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1088)
Q Consensus 95 g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~ 173 (1088)
| |..|+||+... .+++.++.||-+-|..+.|++ .-..++++|.|.+|+||+..+++++..+
T Consensus 70 GDDykIkVWnYk~---------------rrclftL~GHlDYVRt~~FHh---eyPWIlSASDDQTIrIWNwqsr~~iavl 131 (1202)
T KOG0292|consen 70 GDDYKIKVWNYKT---------------RRCLFTLLGHLDYVRTVFFHH---EYPWILSASDDQTIRIWNWQSRKCIAVL 131 (1202)
T ss_pred CCccEEEEEeccc---------------ceehhhhccccceeEEeeccC---CCceEEEccCCCeEEEEeccCCceEEEE
Confidence 6 78999999985 468889999999999999999 8899999999999999999999999999
Q ss_pred ccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe
Q 001391 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1088)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1088)
.+|.. .+.++.|+ |...++++++-|.+|+|||+..-+......+.....+.+.+ ....++.. .....-+.+.
T Consensus 132 tGHnH-YVMcAqFh---ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~---~~~dLfg~-~DaVVK~VLE 203 (1202)
T KOG0292|consen 132 TGHNH-YVMCAQFH---PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQ---GNSDLFGQ-TDAVVKHVLE 203 (1202)
T ss_pred ecCce-EEEeeccC---CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccc---cchhhcCC-cCeeeeeeec
Confidence 88765 34456664 66789999999999999999832221111110000000000 01111111 0223345678
Q ss_pred CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC--CEEEEEeCCCcEE
Q 001391 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCR 331 (1088)
Q Consensus 254 gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~--~~l~sg~~Dg~i~ 331 (1088)
||...|+.++|+|.-..++||++|+.|++|.++..+. -++. +..||...|.++-|++ ++|+|.++|++||
T Consensus 204 GHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa------WEvD--tcrgH~nnVssvlfhp~q~lIlSnsEDksir 275 (1202)
T KOG0292|consen 204 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA------WEVD--TCRGHYNNVSSVLFHPHQDLILSNSEDKSIR 275 (1202)
T ss_pred ccccccceEEecCCcceEEecCCcceeeEEEeccccc------eeeh--hhhcccCCcceEEecCccceeEecCCCccEE
Confidence 9999999999999999999999999999999987543 3344 7899999999999996 8999999999999
Q ss_pred EEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 332 VWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 332 vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
|||+ ..+.+++++..++ ..|.++.+|..++++. +.|+-+.+|.++.
T Consensus 276 VwDm~kRt~v~tfrrend-RFW~laahP~lNLfAA-gHDsGm~VFkleR 322 (1202)
T KOG0292|consen 276 VWDMTKRTSVQTFRREND-RFWILAAHPELNLFAA-GHDSGMIVFKLER 322 (1202)
T ss_pred EEecccccceeeeeccCC-eEEEEEecCCcceeee-ecCCceEEEEEcc
Confidence 9999 5677888877666 4999999999986665 5567788888853
No 23
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.6e-31 Score=257.52 Aligned_cols=282 Identities=19% Similarity=0.333 Sum_probs=230.7
Q ss_pred CEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCC
Q 001391 36 PFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQY 114 (1088)
Q Consensus 36 ~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~ 114 (1088)
-+|++++ |.+||+|...+|++.++++..++ .|..+.++ ||+ ..||+++...||+||++...
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~ds-qVNrLeiT-------pdk----~~LAaa~~qhvRlyD~~S~n------ 72 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDS-QVNRLEIT-------PDK----KDLAAAGNQHVRLYDLNSNN------ 72 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCcc-ceeeEEEc-------CCc----chhhhccCCeeEEEEccCCC------
Confidence 4566644 99999999999999999998666 69999999 887 79999999999999999755
Q ss_pred CCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCc
Q 001391 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEAL 194 (1088)
Q Consensus 115 ~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~ 194 (1088)
..++.++.+|+..|.++.|.. +|+.++|||+||+++|||++...+...+... +.+.++.+ .|+..
T Consensus 73 -------p~Pv~t~e~h~kNVtaVgF~~---dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~--spVn~vvl---hpnQt 137 (311)
T KOG0315|consen 73 -------PNPVATFEGHTKNVTAVGFQC---DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN--SPVNTVVL---HPNQT 137 (311)
T ss_pred -------CCceeEEeccCCceEEEEEee---cCeEEEecCCCceEEEEeccCcccchhccCC--CCcceEEe---cCCcc
Confidence 457899999999999999999 9999999999999999999987666555433 34455555 36778
Q ss_pred EEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEE-EeCCCCCEEEEEEcCCCCEEEE
Q 001391 195 RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR-LVGHEGSIFRIEWSSCGSKLVS 273 (1088)
Q Consensus 195 ~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~gh~~~V~~v~~sp~g~~l~s 273 (1088)
-|++|+.+|.|++||+. ....... +..-...|.++...|||++++.
T Consensus 138 eLis~dqsg~irvWDl~---------------------------------~~~c~~~liPe~~~~i~sl~v~~dgsml~a 184 (311)
T KOG0315|consen 138 ELISGDQSGNIRVWDLG---------------------------------ENSCTHELIPEDDTSIQSLTVMPDGSMLAA 184 (311)
T ss_pred eEEeecCCCcEEEEEcc---------------------------------CCccccccCCCCCcceeeEEEcCCCcEEEE
Confidence 89999999999999998 2222222 2334467999999999999999
Q ss_pred EECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCC--ceeEEEcccCCC
Q 001391 274 VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDG--KQLKMIKEHIGR 349 (1088)
Q Consensus 274 ~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~--~~~~~~~~h~~~ 349 (1088)
+...|...+|++-..... ...+++. .+..|+..+..+.++ ..+|++++.|.+++||+.++ +....+.+|.+
T Consensus 185 ~nnkG~cyvW~l~~~~~~--s~l~P~~--k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~r- 259 (311)
T KOG0315|consen 185 ANNKGNCYVWRLLNHQTA--SELEPVH--KFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQR- 259 (311)
T ss_pred ecCCccEEEEEccCCCcc--ccceEhh--heecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCc-
Confidence 999999999999875431 1123333 678899999999999 58999999999999999954 45567889988
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEcCC-CCCCcccCC
Q 001391 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESH 388 (1088)
Q Consensus 350 ~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~-~~~~~~~~~ 388 (1088)
-+|.++|+.||.||+||+.|+.+++|++.. +.++...+|
T Consensus 260 WvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 260 WVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred eEEeeeeccCccEEEecCCCCceeecccccCceeeecCCc
Confidence 699999999999999999999999999943 333433333
No 24
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=2e-28 Score=269.21 Aligned_cols=608 Identities=15% Similarity=0.152 Sum_probs=369.4
Q ss_pred eEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE--cCCcEEEEEcCC
Q 001391 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC--SDNSIRVWDISN 166 (1088)
Q Consensus 89 ~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs--~Dg~V~iWd~~~ 166 (1088)
.+++.-.+..|.+||.+.. +.-+-+..|...+++++|++ +|+++|+|- ....+++|++..
T Consensus 50 gl~aYpAGCvVVlfn~~~~---------------tQ~hlvnssRk~~t~vAfS~---~GryvatGEcG~~pa~kVw~la~ 111 (1080)
T KOG1408|consen 50 GLCAYPAGCVVVLFNVDSC---------------TQSHLVNSSRKPLTCVAFSQ---NGRYVATGECGRTPASKVWSLAF 111 (1080)
T ss_pred cceeeccCcEEEEEccccc---------------chhheecccCcceeEEEEcC---CCcEEEecccCCCccceeeeecc
Confidence 5666667889999998842 33344567788999999999 999999984 567799999998
Q ss_pred CceEEEeccCCceeEEEEeeecCCCCCcEEEEEec--CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccc
Q 001391 167 SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI--YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH 244 (1088)
Q Consensus 167 ~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~--dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 244 (1088)
...+.++..|... +.+++ ++|.+.++++.+. |-.|.+||++
T Consensus 112 h~vVAEfvdHKY~-vtcva---Fsp~~kyvvSVGsQHDMIVnv~dWr--------------------------------- 154 (1080)
T KOG1408|consen 112 HGVVAEFVDHKYN-VTCVA---FSPGNKYVVSVGSQHDMIVNVNDWR--------------------------------- 154 (1080)
T ss_pred ccchhhhhhcccc-ceeee---ecCCCcEEEeeccccceEEEhhhhh---------------------------------
Confidence 8888777765432 23333 4788999987554 4567789987
Q ss_pred ceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-------
Q 001391 245 TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT------- 317 (1088)
Q Consensus 245 ~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~------- 317 (1088)
...... -..-...|..++|+.||.+++|++. +.|++|.+...+. .+ .+..+.+...-.-.+.+.
T Consensus 155 ~N~~~a-snkiss~Vsav~fsEdgSYfvT~gn-rHvk~wyl~~~~K-----yk--dpiPl~gRs~~lg~lr~n~f~avaC 225 (1080)
T KOG1408|consen 155 VNSSGA-SNKISSVVSAVAFSEDGSYFVTSGN-RHVKLWYLQIQSK-----YK--DPIPLPGRSYFLGNLRFNEFLAVAC 225 (1080)
T ss_pred hccccc-ccccceeEEEEEEccCCceeeeeee-eeEEEEEeecccc-----cc--CCccccchhhhccccccchhhhhhh
Confidence 111111 1123466899999999999999865 6899999987642 00 001222222211112111
Q ss_pred --C----CEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCC-CCCccc-CCc
Q 001391 318 --D----SFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF-LPGSLE-SHP 389 (1088)
Q Consensus 318 --~----~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~-~~~~~~-~~~ 389 (1088)
+ ..++. ...|.+.-|.- .+.+.++-.-......+|+++. ++|++|+.+|.|++++..+. ...+++ .|.
T Consensus 226 g~gicAestfai-t~qGhLvEFSs-RRLLDKWVqcRTTnAnCIcVs~--r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~ha 301 (1080)
T KOG1408|consen 226 GVGICAESTFAI-TAQGHLVEFSS-RRLLDKWVQCRTTNANCICVSS--RLIACGCAKGMVRLFNPETLDYAGTLPRSHA 301 (1080)
T ss_pred cCcccccceEEE-ecccceeeech-hhhhhhhhhhhccccceeeeec--ceEEEeeccceeeecCcchhhhccccccccc
Confidence 1 12221 11222222221 1122111111111345666654 68999999999999998542 222221 111
Q ss_pred cccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCC-eEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceE
Q 001391 390 EAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPII 468 (1088)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~-~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 468 (1088)
.. .+.. .+..++ ..............-.+.|.+.. ++.+.-++..+|.|++.+.....-... -..+...|+
T Consensus 302 lg----~d~a--~~~q~~-~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s-~lyHS~ciW 373 (1080)
T KOG1408|consen 302 LG----SDTA--NLSQPE-PKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSS-MLYHSACIW 373 (1080)
T ss_pred cc----cchh--hccccc-ccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceee-eeeccceee
Confidence 00 0000 000000 00000011111123455677654 566667888899888877654331111 122345566
Q ss_pred EEecCCCC---CCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcc---eeee-----eeee--------------------
Q 001391 469 CMDLLSNE---PKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQ---LSFT-----FTWS-------------------- 517 (1088)
Q Consensus 469 ~l~~~~~~---~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~---~~~~-----~~~~-------------------- 517 (1088)
.+...+.+ ....+-...-+.+++.|++|++|++........ ..+. ....
T Consensus 374 ~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~ 453 (1080)
T KOG1408|consen 374 DVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALV 453 (1080)
T ss_pred eeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccch
Confidence 66665532 111122335589999999999999976221111 0000 0000
Q ss_pred c--cccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeee---CC
Q 001391 518 A--GIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASF---ED 592 (1088)
Q Consensus 518 ~--~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~sp---dg 592 (1088)
. ...-.+. ..+.||+|++|++|+.-|.+++|++.... .. .+..+|+.+|.|+.||. ..
T Consensus 454 s~~d~r~G~R--~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~--------------~~-~~~eAHesEilcLeyS~p~~~~ 516 (1080)
T KOG1408|consen 454 STCDSRFGFR--ALAVSPDGQHLASGDRGGNLRVYDLQELE--------------YT-CFMEAHESEILCLEYSFPVLTN 516 (1080)
T ss_pred hhcCcccceE--EEEECCCcceecccCccCceEEEEehhhh--------------hh-hheecccceeEEEeecCchhhh
Confidence 0 0000122 24789999999999999999999987432 11 23458999999999994 36
Q ss_pred CEEEEEcCCCcEEEEeCCcccccccccccccccCcceeecccccccceeEEEEEeccCCceEEEEecCCCeEEEEEeecC
Q 001391 593 EVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKD 672 (1088)
Q Consensus 593 ~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~ 672 (1088)
++||+|++|.-|.|||+.++ +.+.+++.+|. +.||+|.|....-+ ..++|+|.|..|.+=.....
T Consensus 517 kLLASasrdRlIHV~Dv~rn------------y~l~qtld~HS--ssITsvKFa~~gln-~~MiscGADksimFr~~qk~ 581 (1080)
T KOG1408|consen 517 KLLASASRDRLIHVYDVKRN------------YDLVQTLDGHS--SSITSVKFACNGLN-RKMISCGADKSIMFRVNQKA 581 (1080)
T ss_pred HhhhhccCCceEEEEecccc------------cchhhhhcccc--cceeEEEEeecCCc-eEEEeccCchhhheehhccc
Confidence 89999999999999999874 33456666666 68999999954433 77899999987755433322
Q ss_pred CcceeeecceeeeeeeeEEEeecCCCccCcccceEEEeeecccEEEEeCCcceEEEEEeeCCcCcccccccCCcCCcceE
Q 001391 673 RESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNC 752 (1088)
Q Consensus 673 ~~~~~~~~~~~~~~~~~ve~~~~~~~~~~~~~~~~~~Gf~~~~~~iwn~~~~~~~~~~~cGg~~r~~~~~~~~~~~~~~~ 752 (1088)
..-..|...++.-....+..+..+| ...+++.+.+++++.|+|.......-
T Consensus 582 ~~g~~f~r~t~t~~ktTlYDm~Vdp-----~~k~v~t~cQDrnirif~i~sgKq~k------------------------ 632 (1080)
T KOG1408|consen 582 SSGRLFPRHTQTLSKTTLYDMAVDP-----TSKLVVTVCQDRNIRIFDIESGKQVK------------------------ 632 (1080)
T ss_pred cCceeccccccccccceEEEeeeCC-----CcceEEEEecccceEEEeccccceee------------------------
Confidence 2222333233333355565555432 23357778888888877765433111
Q ss_pred EEEEeccEEEEEeeecccCCCcccccccccccC-cceEEEEEEeccccccccccccccCCCceEEEeccCCceEEEEEec
Q 001391 753 FAYVKDEVIHIHRHWISNGERKMFPKNLHMQFH-GREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYS 831 (1088)
Q Consensus 753 f~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~H-g~eI~~v~~~~~~~~~~~~~~~~~~~~~~~i~TG~eD~tIrl~~~~ 831 (1088)
.|.. .+.| |.-|+- ...|. +.||||.+-|.||.+++|.
T Consensus 633 ----------~FKg---------------s~~~eG~lIKv-~lDPS---------------giY~atScsdktl~~~Df~ 671 (1080)
T KOG1408|consen 633 ----------SFKG---------------SRDHEGDLIKV-ILDPS---------------GIYLATSCSDKTLCFVDFV 671 (1080)
T ss_pred ----------eecc---------------cccCCCceEEE-EECCC---------------ccEEEEeecCCceEEEEec
Confidence 1111 1244 555664 22222 6799999999999999998
Q ss_pred CCCcccccccccccccCCceeeeEEEeeeeeeccccccCccccccccCccccCCCCcEEEEEecceeEEEEEEEEe
Q 001391 832 PGFENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISVGAKRVLTSWLLRH 907 (1088)
Q Consensus 832 ~~~~~~~~~~~~~~H~~gs~v~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~s~g~d~~i~~W~~~~ 907 (1088)
. ......+.+|. -+|+.+.|. + |-.-|+|+.+|+-|++|++-.
T Consensus 672 s----gEcvA~m~GHs--E~VTG~kF~--------------------------n-DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 672 S----GECVAQMTGHS--EAVTGVKFL--------------------------N-DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred c----chhhhhhcCcc--hheeeeeec--------------------------c-cchhheeecCCceEEEEECch
Confidence 6 35688999999 999999995 1 345688999999999999964
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.98 E-value=3.6e-30 Score=272.42 Aligned_cols=315 Identities=16% Similarity=0.256 Sum_probs=254.1
Q ss_pred eeeeeEEEEEeccCCCCCCCC-EEEEEe-CCeEEEEECCC--C--eeEEEEe---------eeCCcceEEEEeccccccc
Q 001391 16 YLGEISALCFVHLPSHLSSLP-FLLAGS-GSQVLLYDLEA--G--TLIRPFQ---------VFHGIRLHGISCNFINCTE 80 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~-~laag~-d~~I~vwd~~t--g--~~~~~~~---------~~~~~~V~~i~~s~~~~~~ 80 (1088)
|..+|++.+|. |. .. +|++|+ +-.-++|++.. + .....++ .+....|.+++|+
T Consensus 177 ~~~~V~~~~Wn--P~----~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn------ 244 (524)
T KOG0273|consen 177 HESEVFICAWN--PL----RDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWN------ 244 (524)
T ss_pred CCCceEEEecC--ch----hhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEec------
Confidence 66789999999 87 44 788888 68999999874 1 1111111 2334579999999
Q ss_pred CCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcE
Q 001391 81 GSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSI 159 (1088)
Q Consensus 81 ~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V 159 (1088)
.+| .+||++. ||.++||+.. ..++.+|..|.++|.++.|+. +|.+|++++.|+++
T Consensus 245 -~~G----~~LatG~~~G~~riw~~~----------------G~l~~tl~~HkgPI~slKWnk---~G~yilS~~vD~tt 300 (524)
T KOG0273|consen 245 -NDG----TLLATGSEDGEARIWNKD----------------GNLISTLGQHKGPIFSLKWNK---KGTYILSGGVDGTT 300 (524)
T ss_pred -CCC----CeEEEeecCcEEEEEecC----------------chhhhhhhccCCceEEEEEcC---CCCEEEeccCCccE
Confidence 888 5666654 9999999987 567888999999999999999 99999999999999
Q ss_pred EEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEe
Q 001391 160 RVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1088)
Q Consensus 160 ~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 239 (1088)
.+||..+++....+.-++.. ...+.+ .+...+++.+.|+.|+|+.+.
T Consensus 301 ilwd~~~g~~~q~f~~~s~~-~lDVdW----~~~~~F~ts~td~~i~V~kv~---------------------------- 347 (524)
T KOG0273|consen 301 ILWDAHTGTVKQQFEFHSAP-ALDVDW----QSNDEFATSSTDGCIHVCKVG---------------------------- 347 (524)
T ss_pred EEEeccCceEEEeeeeccCC-ccceEE----ecCceEeecCCCceEEEEEec----------------------------
Confidence 99999999887777655433 112333 245689999999999999998
Q ss_pred cccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC-
Q 001391 240 QDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD- 318 (1088)
Q Consensus 240 ~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~- 318 (1088)
...++.++.||.+.|.++.|.|.+..|+|+|+|++++||+..... .+. .+.+|...|..+.|+|
T Consensus 348 -----~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~--------~~~--~l~~Hskei~t~~wsp~ 412 (524)
T KOG0273|consen 348 -----EDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN--------SVH--DLQAHSKEIYTIKWSPT 412 (524)
T ss_pred -----CCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc--------chh--hhhhhccceeeEeecCC
Confidence 678899999999999999999999999999999999999987643 333 7889999999999972
Q ss_pred ----------CEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC-CCCCccc
Q 001391 319 ----------SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLE 386 (1088)
Q Consensus 319 ----------~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~-~~~~~~~ 386 (1088)
..+++++.|+++++||+ .+.++.+|..|.. +|.+++|+|+|+++++|+.||.|.+|+.+. +..+.+.
T Consensus 413 g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~ 491 (524)
T KOG0273|consen 413 GPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ 491 (524)
T ss_pred CCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC-ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec
Confidence 47999999999999999 9999999999998 899999999999999999999999999853 2222111
Q ss_pred CCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEE-EEecCCeEEEEE
Q 001391 387 SHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLY-IATNHGYLYHTK 446 (1088)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll-~~t~~g~i~~~~ 446 (1088)
.++.|..++|+.+|..+ ++.++|.+...+
T Consensus 492 -------------------------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 492 -------------------------------GTGGIFELCWNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred -------------------------------CCCeEEEEEEcCCCCEEEEEecCCCceEEE
Confidence 12457888898877544 445666665444
No 26
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=1.8e-29 Score=251.01 Aligned_cols=284 Identities=16% Similarity=0.219 Sum_probs=232.8
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECC-----CCeeEEEEeeeCCcceEEEEecccccccCCCccceee
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLE-----AGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~-----tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~ 89 (1088)
|.+.|++++.. +. . ...|++++ |.++.+|++. .|..++.+.+|.- .|..+..+ +||+ +
T Consensus 14 h~d~Vt~la~~--~~--~-~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH-~v~dv~~s-------~dg~---~ 77 (315)
T KOG0279|consen 14 HTDWVTALAIK--IK--N-SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSH-FVSDVVLS-------SDGN---F 77 (315)
T ss_pred CCceEEEEEee--cC--C-CceEEEcccceEEEEEEeccCccccCceeeeeeccce-EecceEEc-------cCCc---e
Confidence 67899999998 65 2 34666666 8999999874 4778999999655 79999999 8884 6
Q ss_pred EEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce
Q 001391 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1088)
Q Consensus 90 ~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~ 169 (1088)
.|..+-|+++++||+.. .+..+.|.||...|.+++|+| |.+.+++|+.|++|++|++.....
T Consensus 78 alS~swD~~lrlWDl~~---------------g~~t~~f~GH~~dVlsva~s~---dn~qivSGSrDkTiklwnt~g~ck 139 (315)
T KOG0279|consen 78 ALSASWDGTLRLWDLAT---------------GESTRRFVGHTKDVLSVAFST---DNRQIVSGSRDKTIKLWNTLGVCK 139 (315)
T ss_pred EEeccccceEEEEEecC---------------CcEEEEEEecCCceEEEEecC---CCceeecCCCcceeeeeeecccEE
Confidence 66666799999999995 356788899999999999999 999999999999999999966544
Q ss_pred EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeee
Q 001391 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (1088)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 249 (1088)
.......++..+.+++|++. .+...|++++.|+++++||++ ..+..
T Consensus 140 ~t~~~~~~~~WVscvrfsP~-~~~p~Ivs~s~DktvKvWnl~---------------------------------~~~l~ 185 (315)
T KOG0279|consen 140 YTIHEDSHREWVSCVRFSPN-ESNPIIVSASWDKTVKVWNLR---------------------------------NCQLR 185 (315)
T ss_pred EEEecCCCcCcEEEEEEcCC-CCCcEEEEccCCceEEEEccC---------------------------------Ccchh
Confidence 44433333677778888543 247799999999999999999 66777
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC-CEEEEEeCCC
Q 001391 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-SFIITAGEDC 328 (1088)
Q Consensus 250 ~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~-~~l~sg~~Dg 328 (1088)
..+.||.+.++.++++|||..+++|+.||.+.+||++.++. ....+|...|.+++|+| .+.+.+..+.
T Consensus 186 ~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~-----------lysl~a~~~v~sl~fspnrywL~~at~~ 254 (315)
T KOG0279|consen 186 TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN-----------LYSLEAFDIVNSLCFSPNRYWLCAATAT 254 (315)
T ss_pred hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce-----------eEeccCCCeEeeEEecCCceeEeeccCC
Confidence 88899999999999999999999999999999999999754 25678889999999995 5666777778
Q ss_pred cEEEEcC-CCceeEEEcc----c----CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 329 TCRVWGS-DGKQLKMIKE----H----IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 329 ~i~vWd~-~~~~~~~~~~----h----~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
.|+|||+ .+..+..++. . ......+++|++||..|+.|-.|+.|++|.+.
T Consensus 255 sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 255 SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 8999999 5555544432 1 11124578899999999999999999999873
No 27
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=7.2e-29 Score=245.57 Aligned_cols=295 Identities=19% Similarity=0.321 Sum_probs=235.7
Q ss_pred cceeeeccCCCCcEEEEEEecccCC-CCEEEEEEcCCcEEEEEcCC---CceEEEeccCCceeEEEEeeecCCCCCcEEE
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNG-NRSLAIGCSDNSIRVWDISN---SSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d-~~~lasgs~Dg~V~iWd~~~---~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~ 197 (1088)
+..++.+.+|.++|+.++|+| . |..|||||.|+.||+|+... -.+...+.......+.++++ +|.+.+||
T Consensus 4 l~~~~~~~gh~~r~W~~awhp---~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAw---sp~g~~La 77 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHP---GKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAW---SPHGRYLA 77 (312)
T ss_pred ceeEEeecCCCCcEEEEEecc---CCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeee---cCCCcEEE
Confidence 456788899999999999999 5 78999999999999999985 33444444444445666665 78999999
Q ss_pred EEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC
Q 001391 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277 (1088)
Q Consensus 198 sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D 277 (1088)
+++.|.++.||.-. ....+.+..+.||+..|.+++|+++|.+||+|+.|
T Consensus 78 ~aSFD~t~~Iw~k~-------------------------------~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRD 126 (312)
T KOG0645|consen 78 SASFDATVVIWKKE-------------------------------DGEFECVATLEGHENEVKCVAWSASGNYLATCSRD 126 (312)
T ss_pred EeeccceEEEeecC-------------------------------CCceeEEeeeeccccceeEEEEcCCCCEEEEeeCC
Confidence 99999999999865 11567889999999999999999999999999999
Q ss_pred CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC--CEEEEEeCCCcEEEEcCC-C---ceeEEEcccCCCCe
Q 001391 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGSD-G---KQLKMIKEHIGRGI 351 (1088)
Q Consensus 278 g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~--~~l~sg~~Dg~i~vWd~~-~---~~~~~~~~h~~~~V 351 (1088)
++|.||.+..... .+++. .+.+|...|-.+.|+| .+|++++.|.+|++|+.. + .+.+++.+|.. .|
T Consensus 127 KSVWiWe~deddE-----fec~a--VL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~-TV 198 (312)
T KOG0645|consen 127 KSVWIWEIDEDDE-----FECIA--VLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN-TV 198 (312)
T ss_pred CeEEEEEecCCCc-----EEEEe--eeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc-eE
Confidence 9999999986543 46665 8999999999999996 899999999999999973 3 57889999998 79
Q ss_pred EEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCC
Q 001391 352 WRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED 431 (1088)
Q Consensus 352 ~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~ 431 (1088)
|+++|++.|..|++++.|++++||.+.... ...|...+..+++. ++
T Consensus 199 W~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~---------------------------------~~~~sr~~Y~v~W~-~~ 244 (312)
T KOG0645|consen 199 WSLAFDNIGSRLVSCSDDGTVSIWRLYTDL---------------------------------SGMHSRALYDVPWD-NG 244 (312)
T ss_pred EEEEecCCCceEEEecCCcceEeeeeccCc---------------------------------chhcccceEeeeec-cc
Confidence 999999999999999999999999863210 01123456777777 67
Q ss_pred eEEEEecCCeEEEEEeccC-CcceeEEee--eecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEc
Q 001391 432 TLYIATNHGYLYHTKLCDM-DSVNWNKIL--QVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVV 502 (1088)
Q Consensus 432 ~ll~~t~~g~i~~~~~~~~-~~~~~~~~~--~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~ 502 (1088)
.+..++.++.|..++..+. ....|..+. .+.++..|.++...+. ..++|++|+.||.+++|.+.
T Consensus 245 ~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~-------~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 245 VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPK-------VSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCC-------CCCceeecCCCceEEEEEec
Confidence 7777888888876655432 122343332 2334567888887663 25899999999999999874
No 28
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=2e-29 Score=257.56 Aligned_cols=280 Identities=19% Similarity=0.313 Sum_probs=240.7
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.|.|.||++. |. ..++++|+ |++|+|||+.+|++..++.+|-. .|.++++|+. . .+++.++
T Consensus 150 HlgWVr~vavd--P~----n~wf~tgs~DrtikIwDlatg~LkltltGhi~-~vr~vavS~r-------H---pYlFs~g 212 (460)
T KOG0285|consen 150 HLGWVRSVAVD--PG----NEWFATGSADRTIKIWDLATGQLKLTLTGHIE-TVRGVAVSKR-------H---PYLFSAG 212 (460)
T ss_pred ccceEEEEeeC--CC----ceeEEecCCCceeEEEEcccCeEEEeecchhh-eeeeeeeccc-------C---ceEEEec
Confidence 67999999999 97 89999999 79999999999999999999777 6999999943 2 1566666
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.|+.|+-||++. .+.++.+.||-..|.|++.+| .-+.|+||+.|.++|+||+++...+..+.
T Consensus 213 edk~VKCwDLe~---------------nkvIR~YhGHlS~V~~L~lhP---Tldvl~t~grDst~RvWDiRtr~~V~~l~ 274 (460)
T KOG0285|consen 213 EDKQVKCWDLEY---------------NKVIRHYHGHLSGVYCLDLHP---TLDVLVTGGRDSTIRVWDIRTRASVHVLS 274 (460)
T ss_pred CCCeeEEEechh---------------hhhHHHhccccceeEEEeccc---cceeEEecCCcceEEEeeecccceEEEec
Confidence 699999999995 578999999999999999999 88999999999999999999999999998
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
+|...+ .++.+ .+-.-.+++|+.|++|++||+. .++....+..
T Consensus 275 GH~~~V-~~V~~---~~~dpqvit~S~D~tvrlWDl~---------------------------------agkt~~tlt~ 317 (460)
T KOG0285|consen 275 GHTNPV-ASVMC---QPTDPQVITGSHDSTVRLWDLR---------------------------------AGKTMITLTH 317 (460)
T ss_pred CCCCcc-eeEEe---ecCCCceEEecCCceEEEeeec---------------------------------cCceeEeeec
Confidence 887653 34443 3445689999999999999999 7788888999
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEE
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVW 333 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vW 333 (1088)
|+..|.+++.+|....+++++.| .|+-|++..+. .+. .+.+|..-|.+++.. +.++++|+.+|.+..|
T Consensus 318 hkksvral~lhP~e~~fASas~d-nik~w~~p~g~--------f~~--nlsgh~~iintl~~nsD~v~~~G~dng~~~fw 386 (460)
T KOG0285|consen 318 HKKSVRALCLHPKENLFASASPD-NIKQWKLPEGE--------FLQ--NLSGHNAIINTLSVNSDGVLVSGGDNGSIMFW 386 (460)
T ss_pred ccceeeEEecCCchhhhhccCCc-cceeccCCccc--------hhh--ccccccceeeeeeeccCceEEEcCCceEEEEE
Confidence 99999999999999999999998 59999998863 333 688999999999987 8999999999999999
Q ss_pred cC-CCceeEEEc---c----cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 334 GS-DGKQLKMIK---E----HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 334 d~-~~~~~~~~~---~----h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
|. +|...+..+ . ....+|++.+|...|..|+||..|.+|++|.-+
T Consensus 387 dwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 387 DWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred ecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 98 554333321 1 112369999999999999999999999999864
No 29
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.3e-29 Score=260.36 Aligned_cols=280 Identities=22% Similarity=0.349 Sum_probs=246.3
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|..+|+.+-|. |+ ..++++++ |.+|++||..+|++.+.+++|.. .|..|.|+ ..|+ .++.++
T Consensus 107 ~r~~vt~v~~h--p~----~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~-sv~di~~~-------a~Gk---~l~tcS 169 (406)
T KOG0295|consen 107 HRSSVTRVIFH--PS----EALVVSASEDATIKVFDTETGELERSLRGHTD-SVFDISFD-------ASGK---YLATCS 169 (406)
T ss_pred cccceeeeeec--cC----ceEEEEecCCceEEEEEccchhhhhhhhcccc-ceeEEEEe-------cCcc---EEEecC
Confidence 56789999999 98 77777776 79999999999999999999888 59999999 6663 444445
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.|=.+++||... ..++++.+.+|...|.++.|.| .|.+|++++.|++|+.|++.++.++.++.
T Consensus 170 sDl~~~LWd~~~--------------~~~c~ks~~gh~h~vS~V~f~P---~gd~ilS~srD~tik~We~~tg~cv~t~~ 232 (406)
T KOG0295|consen 170 SDLSAKLWDFDT--------------FFRCIKSLIGHEHGVSSVFFLP---LGDHILSCSRDNTIKAWECDTGYCVKTFP 232 (406)
T ss_pred CccchhheeHHH--------------HHHHHHHhcCcccceeeEEEEe---cCCeeeecccccceeEEecccceeEEecc
Confidence 577799999984 2567888899999999999999 89999999999999999999999999998
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
+|.. .+..++. ..||.++|+++.|.++++|-+. +..+...+++
T Consensus 233 ~h~e-wvr~v~v---~~DGti~As~s~dqtl~vW~~~---------------------------------t~~~k~~lR~ 275 (406)
T KOG0295|consen 233 GHSE-WVRMVRV---NQDGTIIASCSNDQTLRVWVVA---------------------------------TKQCKAELRE 275 (406)
T ss_pred CchH-hEEEEEe---cCCeeEEEecCCCceEEEEEec---------------------------------cchhhhhhhc
Confidence 8765 3333443 6789999999999999999998 6777788899
Q ss_pred CCCCEEEEEEcCC---------------CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--
Q 001391 255 HEGSIFRIEWSSC---------------GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-- 317 (1088)
Q Consensus 255 h~~~V~~v~~sp~---------------g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-- 317 (1088)
|+-+|-+++|.|. ++++.+++.|++|++||+.++. ++ +++.+|...|..++|+
T Consensus 276 hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~--------cL--~tL~ghdnwVr~~af~p~ 345 (406)
T KOG0295|consen 276 HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM--------CL--FTLVGHDNWVRGVAFSPG 345 (406)
T ss_pred cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe--------EE--EEEecccceeeeeEEcCC
Confidence 9999999999762 2589999999999999999964 44 4899999999999999
Q ss_pred CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 318 DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 318 ~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
|.+|+++..|+++++||+ +++++..+..|.. -|++++|+.+..+++||+-|.++++|.-
T Consensus 346 Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h-fvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 346 GKYILSCADDKTLRVWDLKNLQCMKTLEAHEH-FVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CeEEEEEecCCcEEEEEeccceeeeccCCCcc-eeEEEecCCCCceEEeccccceeeeeec
Confidence 899999999999999999 8899999999988 6999999999999999999999999963
No 30
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1e-27 Score=260.93 Aligned_cols=240 Identities=14% Similarity=0.244 Sum_probs=209.2
Q ss_pred CcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEeccc
Q 001391 65 GIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (1088)
Q Consensus 65 ~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~ 144 (1088)
..+|.+++++|. .. -.|++--+|.|.||+.++ ..+++.+.-..-+|.+..|-+
T Consensus 13 SdRVKsVd~HPt------eP----w~la~LynG~V~IWnyet---------------qtmVksfeV~~~PvRa~kfia-- 65 (794)
T KOG0276|consen 13 SDRVKSVDFHPT------EP----WILAALYNGDVQIWNYET---------------QTMVKSFEVSEVPVRAAKFIA-- 65 (794)
T ss_pred CCceeeeecCCC------Cc----eEEEeeecCeeEEEeccc---------------ceeeeeeeecccchhhheeee--
Confidence 348999999953 22 566666799999999985 457778877888999999998
Q ss_pred CCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCC
Q 001391 145 NGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEG 224 (1088)
Q Consensus 145 ~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~ 224 (1088)
-.+.+++|+.|..||||+..+++.+..++.|.. .+.+++.| |...++++++.|-.|++||++
T Consensus 66 -RknWiv~GsDD~~IrVfnynt~ekV~~FeAH~D-yIR~iavH---Pt~P~vLtsSDDm~iKlW~we------------- 127 (794)
T KOG0276|consen 66 -RKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSD-YIRSIAVH---PTLPYVLTSSDDMTIKLWDWE------------- 127 (794)
T ss_pred -ccceEEEecCCceEEEEecccceeeEEeecccc-ceeeeeec---CCCCeEEecCCccEEEEeecc-------------
Confidence 889999999999999999999999999987764 35566665 556699999999999999998
Q ss_pred ccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeecee
Q 001391 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSV 303 (1088)
Q Consensus 225 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp-~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~ 303 (1088)
..-.+.+.|.||+.-|.+++|.| |...++|+|-|++|++|.+..... . ++
T Consensus 128 -------------------~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~--------n--fT 178 (794)
T KOG0276|consen 128 -------------------NEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP--------N--FT 178 (794)
T ss_pred -------------------CceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC--------c--ee
Confidence 15567889999999999999999 567899999999999999987432 2 48
Q ss_pred eeccCcceEEEEEC-C---CEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 304 LYGHNARVWDCCLT-D---SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 304 ~~~h~~~I~~v~~~-~---~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
+.+|...|.|+.|- + .+++||+.|.+++|||. +..+++++.+|.. .|..+.|+|.-.+++||+.||++|||+-.
T Consensus 179 l~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~ 257 (794)
T KOG0276|consen 179 LEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSK 257 (794)
T ss_pred eeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc-cceEEEecCCCcEEEEecCCccEEEecCc
Confidence 99999999999997 2 59999999999999999 7889999999998 69999999999999999999999999875
Q ss_pred C
Q 001391 379 A 379 (1088)
Q Consensus 379 ~ 379 (1088)
+
T Consensus 258 T 258 (794)
T KOG0276|consen 258 T 258 (794)
T ss_pred c
Confidence 4
No 31
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=2.7e-27 Score=261.38 Aligned_cols=582 Identities=15% Similarity=0.198 Sum_probs=369.9
Q ss_pred CCCCceEEecCCCc-------eeeeeEEEEEeccCCCCCCCC---EEEEEe-CCeEEEEECCCCe--eEEEEeeeCCcce
Q 001391 2 GKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLP---FLLAGS-GSQVLLYDLEAGT--LIRPFQVFHGIRL 68 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~-------~~~~V~~v~fs~~pd~~~~~~---~laag~-d~~I~vwd~~tg~--~~~~~~~~~~~~V 68 (1088)
....|.+||..+.. |.++|+|+.+. |+ .. ++++|. |+.|.+|.++... ++.++++ + .+
T Consensus 32 a~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l--~~----s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g-~--~~ 102 (764)
T KOG1063|consen 32 AGPAIAVADPEKILIVTTLDGHVARVNCVHWL--PT----SEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQG-H--CK 102 (764)
T ss_pred CCceEEEeCcccceeEEeccCCccceEEEEEc--cc----ccccceEEEccCCCcEEEEEEeehheEEEEeecC-c--ce
Confidence 44568899987763 78999999999 88 33 677776 8999999998543 3444554 2 34
Q ss_pred EEEEecccccccCCCccceeeEEE-EECCCEEEEEEeccCC-----C---CCCC-------CCCc---------------
Q 001391 69 HGISCNFINCTEGSVSTRVTFEVA-LFGEKRVKLFELNFEL-----S---PNSQ-------YQPE--------------- 117 (1088)
Q Consensus 69 ~~i~~s~~~~~~~~d~~~~~~~la-~~gd~~v~iw~l~~~~-----~---~~~~-------~~~~--------------- 117 (1088)
.++++. ... .... .+.|+.+.+|+.+.++ . .... ..++
T Consensus 103 ~~~cv~-------a~~----~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v 171 (764)
T KOG1063|consen 103 ECVCVV-------ARS----SVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVV 171 (764)
T ss_pred eEEEEE-------eee----eEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEE
Confidence 555554 111 2222 2568999999984322 0 0000 0000
Q ss_pred -----cccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce---------------------EE
Q 001391 118 -----TCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI---------------------IL 171 (1088)
Q Consensus 118 -----~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~---------------------~~ 171 (1088)
..-.++.+..+.||.+||.+++|.....+.-+|||+|.|..||||.+.-+.. ..
T Consensus 172 ~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~ 251 (764)
T KOG1063|consen 172 DLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILE 251 (764)
T ss_pred EEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeee
Confidence 0114678889999999999999987443445899999999999999853320 00
Q ss_pred Eec---------cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccc
Q 001391 172 EVH---------SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (1088)
Q Consensus 172 ~~~---------~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 242 (1088)
++. .++..-++++.+ .|.+..|.+++.|.++.+|...+.. -+|.
T Consensus 252 ~i~~~is~eall~GHeDWV~sv~W---~p~~~~LLSASaDksmiiW~pd~~t-----------------------GiWv- 304 (764)
T KOG1063|consen 252 EIQYRISFEALLMGHEDWVYSVWW---HPEGLDLLSASADKSMIIWKPDENT-----------------------GIWV- 304 (764)
T ss_pred eEEEEEehhhhhcCcccceEEEEE---ccchhhheecccCcceEEEecCCcc-----------------------ceEE-
Confidence 111 122334566655 4678899999999999999987210 0111
Q ss_pred ccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCE
Q 001391 243 QHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSF 320 (1088)
Q Consensus 243 ~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~ 320 (1088)
..-.+..+.|..+.-++..|+|++..+++-+..|-.++|...... .........||...|.+++|+ |.+
T Consensus 305 --~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~-------~w~~~~~iSGH~~~V~dv~W~psGef 375 (764)
T KOG1063|consen 305 --DVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKT-------FWTQEPVISGHVDGVKDVDWDPSGEF 375 (764)
T ss_pred --EEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcc-------ceeeccccccccccceeeeecCCCCE
Confidence 112333344555668899999999999999999999999933321 122112778999999999998 899
Q ss_pred EEEEeCCCcEEEEcCCCce-----eEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCC--------cccC
Q 001391 321 IITAGEDCTCRVWGSDGKQ-----LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPG--------SLES 387 (1088)
Q Consensus 321 l~sg~~Dg~i~vWd~~~~~-----~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~--------~~~~ 387 (1088)
|++.+.|.+-|+|-.-|+. +..-+-|.. -++++++-+....+++|.....+|+|+....... .+.+
T Consensus 376 lLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGy-Dl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~ 454 (764)
T KOG1063|consen 376 LLSVSLDQTTRLFARWGRQQEWHEIARPQIHGY-DLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKG 454 (764)
T ss_pred EEEeccccceeeecccccccceeeecccccccc-cceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccC
Confidence 9999999999999874322 223344555 4899999886667899999999999987432111 0100
Q ss_pred C--------ccccccCCCcce-------------EE---------eeeCCCc---------cceeeccCCCCceEEEEec
Q 001391 388 H--------PEAKEFNGRTEI-------------FS---------IKIPNFS---------EQIRLTDSKSEYVRCLHLT 428 (1088)
Q Consensus 388 ~--------~~~~~~~~~~~~-------------~~---------~~~~~~~---------~~~~~~~~~~~~V~~l~~s 428 (1088)
. ....+.+..... .. +..|..+ ..+..+-+|+..|.+++.+
T Consensus 455 ~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s 534 (764)
T KOG1063|consen 455 SDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAIS 534 (764)
T ss_pred chhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEec
Confidence 0 001111100000 00 0001111 1122234788899999999
Q ss_pred cCCeEEEEecCCe---EEEEEeccCCcceeEEe--eeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcC
Q 001391 429 SEDTLYIATNHGY---LYHTKLCDMDSVNWNKI--LQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVG 503 (1088)
Q Consensus 429 ~~~~ll~~t~~g~---i~~~~~~~~~~~~~~~~--~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~ 503 (1088)
|++.+++++.... --.+.+|+..+ |.++ +.+| .-.|.-+.+++ ++.+|++.+.|.++.+|+...
T Consensus 535 ~~gnliASaCKS~~~ehAvI~lw~t~~--W~~~~~L~~H-sLTVT~l~FSp--------dg~~LLsvsRDRt~sl~~~~~ 603 (764)
T KOG1063|consen 535 PTGNLIASACKSSLKEHAVIRLWNTAN--WLQVQELEGH-SLTVTRLAFSP--------DGRYLLSVSRDRTVSLYEVQE 603 (764)
T ss_pred CCCCEEeehhhhCCccceEEEEEeccc--hhhhheeccc-ceEEEEEEECC--------CCcEEEEeecCceEEeeeeec
Confidence 9999998865443 11223566544 4333 3333 45677777744 569999999999999999854
Q ss_pred CCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceE
Q 001391 504 DVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARI 583 (1088)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~I 583 (1088)
.. .. .+.+.....+.+-+.. +.++|++.+++|++.|.+|++|..+......-. .+. ...++..|
T Consensus 604 ~~-~~--e~~fa~~k~HtRIIWd--csW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~------~~a-----~~~~~~aV 667 (764)
T KOG1063|consen 604 DI-KD--EFRFACLKAHTRIIWD--CSWSPDEKYFATASRDKKVKVWEEPDLRDKYIS------RFA-----CLKFSLAV 667 (764)
T ss_pred cc-ch--hhhhccccccceEEEE--cccCcccceeEEecCCceEEEEeccCchhhhhh------hhc-----hhccCCce
Confidence 32 22 2223233333333433 357899999999999999999998865311100 011 23578889
Q ss_pred EEEEeee-----CCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeecccccccceeEEEEEecc-------CC
Q 001391 584 MCLDASF-----EDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLR-------SN 651 (1088)
Q Consensus 584 t~l~~sp-----dg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~-------~~ 651 (1088)
|++++.| .+.++++|-+.|.|.+|......... +...+.....+....+|. +.|+.+.|.+.. .+
T Consensus 668 TAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~~--~aV~rl~w~p~~~~~~~~~~~ 744 (764)
T KOG1063|consen 668 TAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQV-TVGTFNLDTRLCATIGPD--SAVNRLLWRPTCSDDWVEDKE 744 (764)
T ss_pred eeEEeeccccccccceEEEEecccEEEEEecccccccc-cceeeeeccccccccChH--HhhheeEeccccccccccccc
Confidence 9999986 34489999999999999977432100 011111111111112233 579999998653 12
Q ss_pred ceEEEEecCCCeEEEEEee
Q 001391 652 QTEIRSTGGDGCICYLEYD 670 (1088)
Q Consensus 652 ~~~l~t~g~Dg~i~iw~~~ 670 (1088)
...|+++|.|-++|+++++
T Consensus 745 ~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 745 WLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred eeEEeeecccceeEEeecc
Confidence 3568999999999999874
No 32
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=2.7e-28 Score=243.84 Aligned_cols=294 Identities=14% Similarity=0.219 Sum_probs=238.2
Q ss_pred ccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEe
Q 001391 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (1088)
Q Consensus 121 ~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~ 200 (1088)
..+..+.|+||...|.++.|++ |.++|++++.||.+.|||.-+......+..+.. -+..++| +|.+..+|.|+
T Consensus 44 ~~~~rr~LkGH~~Ki~~~~ws~---Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~-WVMtCA~---sPSg~~VAcGG 116 (343)
T KOG0286|consen 44 QMRTRRTLKGHLNKIYAMDWST---DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSS-WVMTCAY---SPSGNFVACGG 116 (343)
T ss_pred eeeeEEEecccccceeeeEecC---CcCeEEeeccCCeEEEEEcccccceeEEecCce-eEEEEEE---CCCCCeEEecC
Confidence 3556688999999999999999 999999999999999999998887777765543 3344454 79999999999
Q ss_pred cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcE
Q 001391 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280 (1088)
Q Consensus 201 ~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v 280 (1088)
-|+...||++.+....+ ..+..+.+.+|++-+.+..|.+| ..|+|+|.|.+.
T Consensus 117 LdN~Csiy~ls~~d~~g---------------------------~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TC 168 (343)
T KOG0286|consen 117 LDNKCSIYPLSTRDAEG---------------------------NVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTC 168 (343)
T ss_pred cCceeEEEecccccccc---------------------------cceeeeeecCccceeEEEEEcCC-CceEecCCCceE
Confidence 99999999998332211 23455678999999999999985 568999999999
Q ss_pred EEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEE
Q 001391 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLY 356 (1088)
Q Consensus 281 ~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~ 356 (1088)
-+||+++++ .+. .+.||.+.|.++.+. ++.+++|+-|++.++||+ .+...++|.+|..+ |.++.|
T Consensus 169 alWDie~g~--------~~~--~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesD-INsv~f 237 (343)
T KOG0286|consen 169 ALWDIETGQ--------QTQ--VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESD-INSVRF 237 (343)
T ss_pred EEEEcccce--------EEE--EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccc-cceEEE
Confidence 999999963 343 788999999999998 589999999999999999 88999999999995 999999
Q ss_pred cCCCCEEEEEeCCCCEEEEEcCC-CCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEE
Q 001391 357 DSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI 435 (1088)
Q Consensus 357 ~~dg~~l~tg~~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~ 435 (1088)
.|+|.-++||+.|++.++||++. +.+..+. -+....+|++++|+..|+++.
T Consensus 238 fP~G~afatGSDD~tcRlyDlRaD~~~a~ys----------------------------~~~~~~gitSv~FS~SGRlLf 289 (343)
T KOG0286|consen 238 FPSGDAFATGSDDATCRLYDLRADQELAVYS----------------------------HDSIICGITSVAFSKSGRLLF 289 (343)
T ss_pred ccCCCeeeecCCCceeEEEeecCCcEEeeec----------------------------cCcccCCceeEEEcccccEEE
Confidence 99999999999999999999964 2222211 112234799999999998877
Q ss_pred Ee-cCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEE
Q 001391 436 AT-NHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (1088)
Q Consensus 436 ~t-~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~ 500 (1088)
++ .+.... +|+.-..+-..++.+| ++.|.|+.+.++ +--+++|+-|..++||.
T Consensus 290 agy~d~~c~---vWDtlk~e~vg~L~GH-eNRvScl~~s~D--------G~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 290 AGYDDFTCN---VWDTLKGERVGVLAGH-ENRVSCLGVSPD--------GMAVATGSWDSTLRIWA 343 (343)
T ss_pred eeecCCcee---EeeccccceEEEeecc-CCeeEEEEECCC--------CcEEEecchhHheeecC
Confidence 74 455566 5554444433455666 678999999554 47899999999999993
No 33
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=3.3e-29 Score=255.97 Aligned_cols=296 Identities=18% Similarity=0.286 Sum_probs=243.4
Q ss_pred cccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEE
Q 001391 118 TCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (1088)
Q Consensus 118 ~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~ 197 (1088)
=+...++.+.+.+|.+||.|+++.| .++.++||+.|++|+|||+.++++..++.++... +..+++ ++...+++
T Consensus 137 WHapwKl~rVi~gHlgWVr~vavdP---~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~-vr~vav---S~rHpYlF 209 (460)
T KOG0285|consen 137 WHAPWKLYRVISGHLGWVRSVAVDP---GNEWFATGSADRTIKIWDLATGQLKLTLTGHIET-VRGVAV---SKRHPYLF 209 (460)
T ss_pred ccCcceehhhhhhccceEEEEeeCC---CceeEEecCCCceeEEEEcccCeEEEeecchhhe-eeeeee---cccCceEE
Confidence 3445788899999999999999999 8999999999999999999999999999877542 334444 56677999
Q ss_pred EEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC
Q 001391 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277 (1088)
Q Consensus 198 sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D 277 (1088)
+++.|+.|+.||++ ..+.++...||-..|.+++.+|.-..|+||+.|
T Consensus 210 s~gedk~VKCwDLe---------------------------------~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grD 256 (460)
T KOG0285|consen 210 SAGEDKQVKCWDLE---------------------------------YNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRD 256 (460)
T ss_pred EecCCCeeEEEech---------------------------------hhhhHHHhccccceeEEEeccccceeEEecCCc
Confidence 99999999999999 777888889999999999999999999999999
Q ss_pred CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEE
Q 001391 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRC 354 (1088)
Q Consensus 278 g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l 354 (1088)
.++|+||+++. ..+. .+.||..+|.++.+. +..+++|+.|++|++||+ .|+...++..|.. .|.++
T Consensus 257 st~RvWDiRtr--------~~V~--~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkk-svral 325 (460)
T KOG0285|consen 257 STIRVWDIRTR--------ASVH--VLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKK-SVRAL 325 (460)
T ss_pred ceEEEeeeccc--------ceEE--EecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccc-eeeEE
Confidence 99999999995 3343 899999999999998 789999999999999999 8999999988887 79999
Q ss_pred EEcCCCCEEEEEeCCCCEEEEEc-CCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeE
Q 001391 355 LYDSLSSLLVTAGFDSAIKVHQF-QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTL 433 (1088)
Q Consensus 355 ~~~~dg~~l~tg~~Dg~I~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~l 433 (1088)
+.+|....+++++.|. |+-|++ .+..++.+ .+|...|.+++.+.|+.+
T Consensus 326 ~lhP~e~~fASas~dn-ik~w~~p~g~f~~nl------------------------------sgh~~iintl~~nsD~v~ 374 (460)
T KOG0285|consen 326 CLHPKENLFASASPDN-IKQWKLPEGEFLQNL------------------------------SGHNAIINTLSVNSDGVL 374 (460)
T ss_pred ecCCchhhhhccCCcc-ceeccCCccchhhcc------------------------------ccccceeeeeeeccCceE
Confidence 9999999999999884 899998 33333322 344567899999999999
Q ss_pred EEEecCCeEEEEEeccCCcceeE--Eeeeec--CCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcC
Q 001391 434 YIATNHGYLYHTKLCDMDSVNWN--KILQVS--EGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVG 503 (1088)
Q Consensus 434 l~~t~~g~i~~~~~~~~~~~~~~--~~~~~~--~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~ 503 (1088)
++++.+|.+..|+..+....+.. .+..+. .+..|++..+...+ ..|++|..|.+|++|.-+.
T Consensus 375 ~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg--------~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 375 VSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTG--------SRLITGEADKTIKMYKEDE 440 (460)
T ss_pred EEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccC--------ceEEeccCCcceEEEeccc
Confidence 99999999987765443332211 111222 23456666665543 7899999999999997654
No 34
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.1e-30 Score=265.21 Aligned_cols=255 Identities=19% Similarity=0.335 Sum_probs=220.1
Q ss_pred CCCCceEEecCCCc-------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEe
Q 001391 2 GKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISC 73 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~-------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~ 73 (1088)
-|++|.|||..+.. |.|.|.|+.|. .+++++|+ |.+|+|||+.+|+++.++-+|-. .|.++.|
T Consensus 215 rDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--------~rviisGSSDsTvrvWDv~tge~l~tlihHce-aVLhlrf 285 (499)
T KOG0281|consen 215 RDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--------ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCE-AVLHLRF 285 (499)
T ss_pred ccCceEEeccccHHHHHhhhcCCCcEEeeecc--------ceEEEecCCCceEEEEeccCCchhhHHhhhcc-eeEEEEE
Confidence 58999999988876 88999999998 68999998 79999999999999999987666 6999999
Q ss_pred cccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEE
Q 001391 74 NFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG 153 (1088)
Q Consensus 74 s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg 153 (1088)
+ +| ..+.++.|+++++||+..+. ...+.+.+.||...|+.+.| +.++++++
T Consensus 286 ~--------ng----~mvtcSkDrsiaVWdm~sps------------~it~rrVLvGHrAaVNvVdf-----d~kyIVsA 336 (499)
T KOG0281|consen 286 S--------NG----YMVTCSKDRSIAVWDMASPT------------DITLRRVLVGHRAAVNVVDF-----DDKYIVSA 336 (499)
T ss_pred e--------CC----EEEEecCCceeEEEeccCch------------HHHHHHHHhhhhhheeeecc-----ccceEEEe
Confidence 8 33 77888889999999998644 35778889999999999999 55799999
Q ss_pred EcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCC
Q 001391 154 CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (1088)
Q Consensus 154 s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~ 233 (1088)
+.|.+|++|++.+++.+.++.+|.+.+. ++. -.+.++++|+.|++|++||+.
T Consensus 337 SgDRTikvW~~st~efvRtl~gHkRGIA-ClQ-----Yr~rlvVSGSSDntIRlwdi~---------------------- 388 (499)
T KOG0281|consen 337 SGDRTIKVWSTSTCEFVRTLNGHKRGIA-CLQ-----YRDRLVVSGSSDNTIRLWDIE---------------------- 388 (499)
T ss_pred cCCceEEEEeccceeeehhhhcccccce-ehh-----ccCeEEEecCCCceEEEEecc----------------------
Confidence 9999999999999999999998887643 333 368899999999999999999
Q ss_pred CceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCC-CceeeeceeeeccCcceE
Q 001391 234 FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD-SIEEVGSSVLYGHNARVW 312 (1088)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~-~~~~i~~~~~~~h~~~I~ 312 (1088)
.+.++..+.||+.-|.++.| |.+.+++|+.||+|++||+......... ..-++ ..+..|+++|.
T Consensus 389 -----------~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl--~~lv~hsgRVF 453 (499)
T KOG0281|consen 389 -----------CGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCL--RTLVEHSGRVF 453 (499)
T ss_pred -----------ccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHH--HhhhhccceeE
Confidence 78899999999999999999 5678999999999999999886431111 11123 36778999999
Q ss_pred EEEECCCEEEEEeCCCcEEEEcC-CC
Q 001391 313 DCCLTDSFIITAGEDCTCRVWGS-DG 337 (1088)
Q Consensus 313 ~v~~~~~~l~sg~~Dg~i~vWd~-~~ 337 (1088)
.+.|....+++++.|.+|.|||+ ++
T Consensus 454 rLQFD~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 454 RLQFDEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred EEeecceEEEeccCCCeEEEEEcCCC
Confidence 99999999999999999999999 44
No 35
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=2.5e-26 Score=258.63 Aligned_cols=467 Identities=15% Similarity=0.187 Sum_probs=301.9
Q ss_pred CCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCC
Q 001391 33 SSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNS 112 (1088)
Q Consensus 33 ~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~ 112 (1088)
++.-++.++.|...++||+..-.++..-.... .+|++++-. . ..+.++..+.|.+|.-..
T Consensus 45 ~~~~~vtt~vgksfqvYd~~kl~ll~vs~~lp-~~I~alas~-------~------~~vy~A~g~~i~~~~rgk------ 104 (910)
T KOG1539|consen 45 GSTFYVTTCVGKSFQVYDVNKLNLLFVSKPLP-DKITALASD-------K------DYVYVASGNKIYAYARGK------ 104 (910)
T ss_pred CceEEEEEecCceEEEEeccceEEEEecCCCC-CceEEEEec-------C------ceEEEecCcEEEEEEccc------
Confidence 33556777779999999999877766554333 479999876 3 234444456777776431
Q ss_pred CCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC-ceE---EEeccCCceeEEEEeeec
Q 001391 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS-SII---LEVHSPERCLLYSMKLWG 188 (1088)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~-~~~---~~~~~~~~~~~~s~~~~~ 188 (1088)
.....+.+|...|.-+.. =|.++..+..++.+.+|+.... +.. ..+...+...+.++. |
T Consensus 105 ----------~i~~~~~~~~a~v~~l~~-----fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H- 167 (910)
T KOG1539|consen 105 ----------HIRHTTLLHGAKVHLLLP-----FGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H- 167 (910)
T ss_pred ----------eEEEEeccccceEEEEee-----ecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c-
Confidence 234555677777776654 5678888889999999999874 211 111111222132321 1
Q ss_pred CCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCC
Q 001391 189 DNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG 268 (1088)
Q Consensus 189 ~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g 268 (1088)
.+.--+.|+.|+..|.+++|+++ +++.+++++++...|+++.=+|--
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvr---------------------------------t~K~v~~f~~~~s~IT~ieqsPaL 214 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVR---------------------------------TGKVVYTFQEFFSRITAIEQSPAL 214 (910)
T ss_pred chhheeeEEEeecCCcEEEEEec---------------------------------cCcEEEEecccccceeEeccCCcc
Confidence 12223578999999999999999 889999999999999999999999
Q ss_pred CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeecc-CcceEEEEEC---CCEEEEEeCCCcEEEEcCCCceeE-EE
Q 001391 269 SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH-NARVWDCCLT---DSFIITAGEDCTCRVWGSDGKQLK-MI 343 (1088)
Q Consensus 269 ~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h-~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~~~~~~~-~~ 343 (1088)
..++.|..+|+|.++|+..++. + ....| .++|+++.|. ..++++|+..|.+.+||++++.+. .+
T Consensus 215 DVVaiG~~~G~ViifNlK~dki--------l---~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~ 283 (910)
T KOG1539|consen 215 DVVAIGLENGTVIIFNLKFDKI--------L---MSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVT 283 (910)
T ss_pred eEEEEeccCceEEEEEcccCcE--------E---EEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeee
Confidence 9999999999999999998643 2 33344 5899999998 468899999999999999665543 33
Q ss_pred -cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCce
Q 001391 344 -KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYV 422 (1088)
Q Consensus 344 -~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 422 (1088)
..|.+ +|....|.|....++|++.|+.+++|=.+.. ...+..++.-.+|..+.
T Consensus 284 ~nah~~-sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~-------------------------dg~pR~LR~R~GHs~Pp 337 (910)
T KOG1539|consen 284 RNAHYG-SVTGATFLPGEPVLVTAGADNSLKVWVFDSG-------------------------DGVPRLLRSRGGHSAPP 337 (910)
T ss_pred eccccC-CcccceecCCCceEeeccCCCceeEEEeeCC-------------------------CCcchheeeccCCCCCc
Confidence 47877 7999999999999999999999999966421 11122334445677888
Q ss_pred EEEEecc-CCeEEEE-ecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEE
Q 001391 423 RCLHLTS-EDTLYIA-TNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (1088)
Q Consensus 423 ~~l~~s~-~~~ll~~-t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~ 500 (1088)
.|+.|.. ++..+.. ..++.+..+.+......+ ++.+.+. -...+.+.+..
T Consensus 338 ~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~--~l~~~~~--------------------------~~~~kk~~~~~ 389 (910)
T KOG1539|consen 338 SCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQ--ELGQLHN--------------------------KKRAKKVNVFS 389 (910)
T ss_pred hheeeeccCcEEEEecccCcchhhhhhhHHHHhH--hhccccc--------------------------ccccccccccc
Confidence 8999874 5554444 444444432221111000 0100000 00001122211
Q ss_pred EcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceee-eeeecccc
Q 001391 501 VVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFL-VAEFSSCF 579 (1088)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l-~~~~~~~h 579 (1088)
...-+..+...+.+.+..+ ....+.+++.-.+...+.|+...... +.+ .+ +..|. ..
T Consensus 390 ~~~~k~p~i~~fa~~~~RE------------~~W~Nv~~~h~~~~~~~tW~~~n~~~-G~~--------~L~~~~~~-~~ 447 (910)
T KOG1539|consen 390 TEKLKLPPIVEFAFENARE------------KEWDNVITAHKGKRSAYTWNFRNKTS-GRH--------VLDPKRFK-KD 447 (910)
T ss_pred hhhhcCCcceeeecccchh------------hhhcceeEEecCcceEEEEeccCccc-ccE--------EecCcccc-cc
Confidence 1111111111111111100 01123444445567788898875421 111 11 11222 24
Q ss_pred CceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceee-cccccccceeEEEEEeccCCceEEEEe
Q 001391 580 GARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYF-KGAHGISTVSTLSVAKLRSNQTEIRST 658 (1088)
Q Consensus 580 ~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~-~g~hg~~~Vtsv~~~~~~~~~~~l~t~ 658 (1088)
...+++++.++-|++.+.|+..|+|-+|++..+.. ...+. .-.|+ ..|+.|+.. .-+..++|+
T Consensus 448 ~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~------------r~sf~~~~ah~-~~V~gla~D---~~n~~~vsa 511 (910)
T KOG1539|consen 448 DINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH------------RKSFGDSPAHK-GEVTGLAVD---GTNRLLVSA 511 (910)
T ss_pred CcceEEEEEeccCceEEEeccCCeEEEEEcccCee------------ecccccCcccc-CceeEEEec---CCCceEEEc
Confidence 57799999999999999999999999999987532 11111 11454 689999887 456789999
Q ss_pred cCCCeEEEEEeecC
Q 001391 659 GGDGCICYLEYDKD 672 (1088)
Q Consensus 659 g~Dg~i~iw~~~~~ 672 (1088)
|.||.+++|+....
T Consensus 512 ~~~Gilkfw~f~~k 525 (910)
T KOG1539|consen 512 GADGILKFWDFKKK 525 (910)
T ss_pred cCcceEEEEecCCc
Confidence 99999999998764
No 36
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=5.9e-26 Score=255.68 Aligned_cols=524 Identities=12% Similarity=0.181 Sum_probs=363.0
Q ss_pred CCCceEEecCCCc-------eeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCC-eeEEEEeeeCCcceEEEEec
Q 001391 3 KKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG-TLIRPFQVFHGIRLHGISCN 74 (1088)
Q Consensus 3 d~~i~iWdl~~g~-------~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg-~~~~~~~~~~~~~V~~i~~s 74 (1088)
+++.+++|..+.+ +...|+||+-. +.++.++++..|.+|- -| ...+.+..|. ..|+-+..-
T Consensus 55 gksfqvYd~~kl~ll~vs~~lp~~I~alas~--------~~~vy~A~g~~i~~~~--rgk~i~~~~~~~~-a~v~~l~~f 123 (910)
T KOG1539|consen 55 GKSFQVYDVNKLNLLFVSKPLPDKITALASD--------KDYVYVASGNKIYAYA--RGKHIRHTTLLHG-AKVHLLLPF 123 (910)
T ss_pred CceEEEEeccceEEEEecCCCCCceEEEEec--------CceEEEecCcEEEEEE--ccceEEEEecccc-ceEEEEeee
Confidence 5677888877665 45679999977 5689999998999987 34 4445555555 568877754
Q ss_pred ccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE
Q 001391 75 FINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC 154 (1088)
Q Consensus 75 ~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs 154 (1088)
.+ .++++-.++.+.||+...... +.. .+ ...++.-.+.|+++. +| +.--+.++.|+
T Consensus 124 -------Ge-----~lia~d~~~~l~vw~~s~~~~-e~~--------l~-~~~~~~~~~~Ital~-HP-~TYLNKIvvGs 179 (910)
T KOG1539|consen 124 -------GE-----HLIAVDISNILFVWKTSSIQE-ELY--------LQ-STFLKVEGDFITALL-HP-STYLNKIVVGS 179 (910)
T ss_pred -------cc-----eEEEEEccCcEEEEEeccccc-ccc--------cc-ceeeeccCCceeeEe-cc-hhheeeEEEee
Confidence 22 788888899999999886310 000 11 222223333477764 45 11235688999
Q ss_pred cCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCC
Q 001391 155 SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF 234 (1088)
Q Consensus 155 ~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~ 234 (1088)
.+|.+++|++++++.+.+++... ..+.++. .+|--..+|.|..+|+|.+++++
T Consensus 180 ~~G~lql~Nvrt~K~v~~f~~~~-s~IT~ie---qsPaLDVVaiG~~~G~ViifNlK----------------------- 232 (910)
T KOG1539|consen 180 SQGRLQLWNVRTGKVVYTFQEFF-SRITAIE---QSPALDVVAIGLENGTVIIFNLK----------------------- 232 (910)
T ss_pred cCCcEEEEEeccCcEEEEecccc-cceeEec---cCCcceEEEEeccCceEEEEEcc-----------------------
Confidence 99999999999999999998766 4444443 35667789999999999999999
Q ss_pred ceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCE-EEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEE
Q 001391 235 KCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK-LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD 313 (1088)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~-l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~ 313 (1088)
..+.+..|+...+.|++++|..||.. +++++..|.+-+||++..+. +. .....|.+.|..
T Consensus 233 ----------~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl--------~~-v~~nah~~sv~~ 293 (910)
T KOG1539|consen 233 ----------FDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKL--------IN-VTRNAHYGSVTG 293 (910)
T ss_pred ----------cCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCee--------ee-eeeccccCCccc
Confidence 77888888866799999999999975 56666779999999998643 32 245578888888
Q ss_pred EEEC--CCEEEEEeCCCcEEEEcC---CC--ceeEEEcccCCCCeEEEEEc-CCCCEEEEEeCCCCEEEEEcCCCCCCcc
Q 001391 314 CCLT--DSFIITAGEDCTCRVWGS---DG--KQLKMIKEHIGRGIWRCLYD-SLSSLLVTAGFDSAIKVHQFQAFLPGSL 385 (1088)
Q Consensus 314 v~~~--~~~l~sg~~Dg~i~vWd~---~~--~~~~~~~~h~~~~V~~l~~~-~dg~~l~tg~~Dg~I~iwd~~~~~~~~~ 385 (1088)
..|. ...+++++.|..+++|=. +| +.++.-.+|.. |-.++.|. .+|..+.+++.|++++.+++.......-
T Consensus 294 ~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~-Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~ 372 (910)
T KOG1539|consen 294 ATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSA-PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQE 372 (910)
T ss_pred ceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCC-CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHh
Confidence 8887 478999999999998876 33 55667788988 78999986 7889999999999999998732111000
Q ss_pred cCCccccccCCCcceEEeeeCCCcccee---eccCCCCceEEEEecc------CCeEEEEecCCeEEEEEeccCCcceeE
Q 001391 386 ESHPEAKEFNGRTEIFSIKIPNFSEQIR---LTDSKSEYVRCLHLTS------EDTLYIATNHGYLYHTKLCDMDSVNWN 456 (1088)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~V~~l~~s~------~~~ll~~t~~g~i~~~~~~~~~~~~~~ 456 (1088)
.++. ..+...+... ....+-.+|..+++.. ++.+.+--++-..+.|+..+...++|.
T Consensus 373 l~~~--------------~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~ 438 (910)
T KOG1539|consen 373 LGQL--------------HNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHV 438 (910)
T ss_pred hccc--------------ccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEE
Confidence 0000 0000000000 0001112344444433 233444445556777777666666652
Q ss_pred Eeeeec----CCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeec
Q 001391 457 KILQVS----EGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKS 532 (1088)
Q Consensus 457 ~~~~~~----~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 532 (1088)
+ ... ....+.++++.. .+++.+.|...|.|.+|++..+....... -...+.+.+.+ .+..
T Consensus 439 -L-~~~~~~~~~~~~~av~vs~--------CGNF~~IG~S~G~Id~fNmQSGi~r~sf~----~~~ah~~~V~g--la~D 502 (910)
T KOG1539|consen 439 -L-DPKRFKKDDINATAVCVSF--------CGNFVFIGYSKGTIDRFNMQSGIHRKSFG----DSPAHKGEVTG--LAVD 502 (910)
T ss_pred -e-cCccccccCcceEEEEEec--------cCceEEEeccCCeEEEEEcccCeeecccc----cCccccCceeE--EEec
Confidence 1 211 235566666644 45999999999999999998875443211 01223333444 2334
Q ss_pred CCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcc
Q 001391 533 LGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (1088)
Q Consensus 533 ~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~ 612 (1088)
.-++.+++++.+|.++.|+..... +.+... -...++++.+.....++|++..|-.|.++|..+.
T Consensus 503 ~~n~~~vsa~~~Gilkfw~f~~k~--------------l~~~l~--l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~ 566 (910)
T KOG1539|consen 503 GTNRLLVSAGADGILKFWDFKKKV--------------LKKSLR--LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR 566 (910)
T ss_pred CCCceEEEccCcceEEEEecCCcc--------------eeeeec--cCCCcceeeeeehhhhhhhhcCceeEEEEEchhh
Confidence 456789999999999999988432 222322 2445888888888999999999999999998753
Q ss_pred cccccccccccccCcceeecccccccceeEEEEEeccCCceEEEEecCCCeEEEEEeecC
Q 001391 613 LLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKD 672 (1088)
Q Consensus 613 ~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~ 672 (1088)
++ ...|.||. +.||.++|+ +|++.|++++.|++||+||+..+
T Consensus 567 -----------kv--vR~f~gh~--nritd~~FS---~DgrWlisasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 567 -----------KV--VREFWGHG--NRITDMTFS---PDGRWLISASMDSTIRTWDLPTG 608 (910)
T ss_pred -----------hh--hHHhhccc--cceeeeEeC---CCCcEEEEeecCCcEEEEeccCc
Confidence 21 33456565 589999999 88999999999999999999765
No 37
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1.4e-27 Score=245.79 Aligned_cols=340 Identities=17% Similarity=0.219 Sum_probs=263.2
Q ss_pred eeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCC
Q 001391 124 LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN 203 (1088)
Q Consensus 124 ~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg 203 (1088)
-+..+..|++.|++++.+| +.+++||||.|..-.+|++.++.....+.+|..++ .++.| +.++.+||+|+.+|
T Consensus 56 S~~tF~~H~~svFavsl~P---~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSV-t~~~F---shdgtlLATGdmsG 128 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHP---NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSV-TCCSF---SHDGTLLATGDMSG 128 (399)
T ss_pred ceeehhhcCCceEEEEeCC---CCceEEecCCCceEEEEEccCCcceeEecCCCCce-EEEEE---ccCceEEEecCCCc
Confidence 4567889999999999999 99999999999999999999999998888887653 34444 77899999999999
Q ss_pred eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEE
Q 001391 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIW 283 (1088)
Q Consensus 204 ~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iW 283 (1088)
.|+||+.. ++.....+.+--..|--+.|+|.+..|+.|+.||.+.+|
T Consensus 129 ~v~v~~~s---------------------------------tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw 175 (399)
T KOG0296|consen 129 KVLVFKVS---------------------------------TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMW 175 (399)
T ss_pred cEEEEEcc---------------------------------cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEE
Confidence 99999998 555556665666788999999999999999999999999
Q ss_pred EcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCC
Q 001391 284 EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS 360 (1088)
Q Consensus 284 d~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg 360 (1088)
.+.++. ..+ .+.||+.++++-.|. |..++++..||+|++|+. +++++..+..-.+....++.++..+
T Consensus 176 ~ip~~~--------~~k--v~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~ 245 (399)
T KOG0296|consen 176 QIPSQA--------LCK--VMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAG 245 (399)
T ss_pred ECCCcc--------eee--EecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccccc
Confidence 998842 222 889999999999998 789999999999999999 8999998876555578899999999
Q ss_pred CEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCC
Q 001391 361 SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHG 440 (1088)
Q Consensus 361 ~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g 440 (1088)
..+++|..++.+++-+... |+++...+ +
T Consensus 246 ~~~~~g~~e~~~~~~~~~s---------------------------------------------------gKVv~~~n-~ 273 (399)
T KOG0296|consen 246 STLTKGNSEGVACGVNNGS---------------------------------------------------GKVVNCNN-G 273 (399)
T ss_pred ceeEeccCCccEEEEcccc---------------------------------------------------ceEEEecC-C
Confidence 9999999999888765421 12222211 1
Q ss_pred eEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccc
Q 001391 441 YLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGI 520 (1088)
Q Consensus 441 ~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~ 520 (1088)
..- .+ ...+...+-++...+. +..-.+.|+|+-||+|.|||+....++.+ + .+
T Consensus 274 ~~~-------------~l-~~~~e~~~esve~~~~-----ss~lpL~A~G~vdG~i~iyD~a~~~~R~~------c--~h 326 (399)
T KOG0296|consen 274 TVP-------------EL-KPSQEELDESVESIPS-----SSKLPLAACGSVDGTIAIYDLAASTLRHI------C--EH 326 (399)
T ss_pred CCc-------------cc-cccchhhhhhhhhccc-----ccccchhhcccccceEEEEecccchhhee------c--cC
Confidence 000 00 1111222333333332 23447899999999999999987554321 1 22
Q ss_pred cceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcC
Q 001391 521 ERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDL 600 (1088)
Q Consensus 521 ~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~ 600 (1088)
+..+.... +-+ ..+|++++.+|.|+.||.+.+. +...+ .+|...|.+++++|+.++++++|.
T Consensus 327 e~~V~~l~--w~~-t~~l~t~c~~g~v~~wDaRtG~--------------l~~~y-~GH~~~Il~f~ls~~~~~vvT~s~ 388 (399)
T KOG0296|consen 327 EDGVTKLK--WLN-TDYLLTACANGKVRQWDARTGQ--------------LKFTY-TGHQMGILDFALSPQKRLVVTVSD 388 (399)
T ss_pred CCceEEEE--EcC-cchheeeccCceEEeeeccccc--------------eEEEE-ecCchheeEEEEcCCCcEEEEecC
Confidence 22233322 333 6899999999999999999763 22333 489999999999999999999999
Q ss_pred CCcEEEEeCC
Q 001391 601 RGNLVLFPLL 610 (1088)
Q Consensus 601 dg~I~Iw~~~ 610 (1088)
|++.+||+++
T Consensus 389 D~~a~VF~v~ 398 (399)
T KOG0296|consen 389 DNTALVFEVP 398 (399)
T ss_pred CCeEEEEecC
Confidence 9999999875
No 38
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.8e-26 Score=258.35 Aligned_cols=364 Identities=15% Similarity=0.215 Sum_probs=274.3
Q ss_pred CCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecc
Q 001391 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKV 143 (1088)
Q Consensus 64 ~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~ 143 (1088)
+..+|.+++|+| .. .-+|++--.|.|++||... ..++..+..|.++|..++|+|
T Consensus 8 kSsRvKglsFHP-------~r---PwILtslHsG~IQlWDYRM---------------~tli~rFdeHdGpVRgv~FH~- 61 (1202)
T KOG0292|consen 8 KSSRVKGLSFHP-------KR---PWILTSLHSGVIQLWDYRM---------------GTLIDRFDEHDGPVRGVDFHP- 61 (1202)
T ss_pred ccccccceecCC-------CC---CEEEEeecCceeeeehhhh---------------hhHHhhhhccCCccceeeecC-
Confidence 445899999995 32 1555666699999999885 568889999999999999999
Q ss_pred cCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCC
Q 001391 144 CNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPE 223 (1088)
Q Consensus 144 ~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~ 223 (1088)
.+.++++||.|-.|++|+..+.+++.++.+|.. .+.++.|| +.-.+|++++.|.+|+||+++
T Consensus 62 --~qplFVSGGDDykIkVWnYk~rrclftL~GHlD-YVRt~~FH---heyPWIlSASDDQTIrIWNwq------------ 123 (1202)
T KOG0292|consen 62 --TQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLD-YVRTVFFH---HEYPWILSASDDQTIRIWNWQ------------ 123 (1202)
T ss_pred --CCCeEEecCCccEEEEEecccceehhhhccccc-eeEEeecc---CCCceEEEccCCCeEEEEecc------------
Confidence 999999999999999999999999999988865 35566665 445699999999999999999
Q ss_pred CccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCC--------
Q 001391 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDS-------- 295 (1088)
Q Consensus 224 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~-------- 295 (1088)
+..++..+.||..-|.|..|+|....++|+|-|.+||+||+...+.....+
T Consensus 124 ---------------------sr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~ 182 (1202)
T KOG0292|consen 124 ---------------------SRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMR 182 (1202)
T ss_pred ---------------------CCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhh
Confidence 889999999999999999999999999999999999999997644321000
Q ss_pred ------------ceeeeceeeeccCcceEEEEECC--CEEEEEeCCCcEEEEcCCC---ceeEEEcccCCCCeEEEEEcC
Q 001391 296 ------------IEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGSDG---KQLKMIKEHIGRGIWRCLYDS 358 (1088)
Q Consensus 296 ------------~~~i~~~~~~~h~~~I~~v~~~~--~~l~sg~~Dg~i~vWd~~~---~~~~~~~~h~~~~V~~l~~~~ 358 (1088)
...++ +.+.||...|.-++|++ .+|+||+.|+.|++|..+. -.+.+.++|.+ +|.++-|+|
T Consensus 183 ~~~~~~dLfg~~DaVVK-~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n-nVssvlfhp 260 (1202)
T KOG0292|consen 183 GQQGNSDLFGQTDAVVK-HVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN-NVSSVLFHP 260 (1202)
T ss_pred ccccchhhcCCcCeeee-eeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccC-CcceEEecC
Confidence 12233 58899999999999997 8999999999999999943 34566789998 799999999
Q ss_pred CCCEEEEEeCCCCEEEEEcCC-CCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEe
Q 001391 359 LSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT 437 (1088)
Q Consensus 359 dg~~l~tg~~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t 437 (1088)
..+++++.|.|++|++||++. ..++++ ....+....++-.|...+++++
T Consensus 261 ~q~lIlSnsEDksirVwDm~kRt~v~tf------------------------------rrendRFW~laahP~lNLfAAg 310 (1202)
T KOG0292|consen 261 HQDLILSNSEDKSIRVWDMTKRTSVQTF------------------------------RRENDRFWILAAHPELNLFAAG 310 (1202)
T ss_pred ccceeEecCCCccEEEEecccccceeee------------------------------eccCCeEEEEEecCCcceeeee
Confidence 999999999999999999954 223322 2233567888899999999999
Q ss_pred cCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeee
Q 001391 438 NHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWS 517 (1088)
Q Consensus 438 ~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~ 517 (1088)
.++.+..+++. .+.+++++. ++.+.... |..|+-+|+.+.+-.+...+.. .
T Consensus 311 HDsGm~VFkle--------------RErpa~~v~------------~n~LfYvk-d~~i~~~d~~t~~d~~v~~lr~--~ 361 (1202)
T KOG0292|consen 311 HDSGMIVFKLE--------------RERPAYAVN------------GNGLFYVK-DRFIRSYDLRTQKDTAVASLRR--P 361 (1202)
T ss_pred cCCceEEEEEc--------------ccCceEEEc------------CCEEEEEc-cceEEeeeccccccceeEeccC--C
Confidence 88877654442 234455542 24444444 8899999998744333222221 1
Q ss_pred ccccceeeeEEEeecC-CCeEEEEECC-CCeEEEEecCCC
Q 001391 518 AGIERQLLGTYWCKSL-GHRFIFTADP-KGRLKLWQLCDP 555 (1088)
Q Consensus 518 ~~~~~~~~~~~~~~s~-dg~~L~s~~~-dg~i~vwd~~~~ 555 (1088)
...-....+ ..+.| .+..|++++. .|..-++.+...
T Consensus 362 g~~~~~~~s--msYNpae~~vlics~~~n~~y~L~~ipk~ 399 (1202)
T KOG0292|consen 362 GTLWQPPRS--LSYNPAENAVLICSNLDNGEYELVQIPKD 399 (1202)
T ss_pred CcccCCcce--eeeccccCeEEEEeccCCCeEEEEEecCc
Confidence 110111112 23445 4455555544 456667777644
No 39
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=2.1e-28 Score=275.86 Aligned_cols=261 Identities=17% Similarity=0.302 Sum_probs=218.1
Q ss_pred eEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCC---CCCCC--CCC-----c------c
Q 001391 56 LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFEL---SPNSQ--YQP-----E------T 118 (1088)
Q Consensus 56 ~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~---~~~~~--~~~-----~------~ 118 (1088)
+..++.. ....+.|..|+ +|+ .++|+ +.|..|++|.+.... .+... -.+ + +
T Consensus 370 c~YT~~n-t~~~v~ca~fS-------dds----smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D 437 (707)
T KOG0263|consen 370 CMYTFHN-TYQGVTCAEFS-------DDS----SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLD 437 (707)
T ss_pred EEEEEEE-cCCcceeEeec-------CCc----chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhcc
Confidence 4445554 34469999999 776 44444 569999999998421 00000 000 0 0
Q ss_pred ccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEE
Q 001391 119 CVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS 198 (1088)
Q Consensus 119 ~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~s 198 (1088)
.........+.||.++|..+.|+| +.++|++++.|++||+|.+.+..++....+|. ..+|.+.| +|.|-++|+
T Consensus 438 ~~~~~~~~~L~GH~GPVyg~sFsP---d~rfLlScSED~svRLWsl~t~s~~V~y~GH~-~PVwdV~F---~P~GyYFat 510 (707)
T KOG0263|consen 438 DDSSGTSRTLYGHSGPVYGCSFSP---DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHL-APVWDVQF---APRGYYFAT 510 (707)
T ss_pred ccCCceeEEeecCCCceeeeeecc---cccceeeccCCcceeeeecccceeEEEecCCC-cceeeEEe---cCCceEEEe
Confidence 001234456889999999999999 99999999999999999999999998888664 45777776 688999999
Q ss_pred EecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCC
Q 001391 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR 278 (1088)
Q Consensus 199 g~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg 278 (1088)
++.|++.++|... ...+++.+.||-..|.|+.|+|+..++++||.|+
T Consensus 511 as~D~tArLWs~d---------------------------------~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~ 557 (707)
T KOG0263|consen 511 ASHDQTARLWSTD---------------------------------HNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDR 557 (707)
T ss_pred cCCCceeeeeecc---------------------------------cCCchhhhcccccccceEEECCcccccccCCCCc
Confidence 9999999999998 6778888999999999999999999999999999
Q ss_pred cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEE
Q 001391 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCL 355 (1088)
Q Consensus 279 ~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~ 355 (1088)
+||+||+.++. .++ .+.||.++|.+++|+ |.+|++|++||.|.+||+ .++++..+.+|.+ .|.++.
T Consensus 558 tVRlWDv~~G~--------~VR--iF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~-ti~Sls 626 (707)
T KOG0263|consen 558 TVRLWDVSTGN--------SVR--IFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTG-TIYSLS 626 (707)
T ss_pred eEEEEEcCCCc--------EEE--EecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccC-ceeEEE
Confidence 99999999963 444 789999999999999 799999999999999999 7899999999988 799999
Q ss_pred EcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 356 YDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 356 ~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
|+.+|..||+||.|.+|++||+..
T Consensus 627 FS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 627 FSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EecCCCEEEecCCCCeEEEEEchh
Confidence 999999999999999999999843
No 40
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=7.2e-28 Score=255.08 Aligned_cols=336 Identities=17% Similarity=0.211 Sum_probs=258.7
Q ss_pred eeeeccCCCCcEEEEEEecccCCCC-EEEEEEcCCcEEEEEcCCCc--e--EEEec---------cCCceeEEEEeeecC
Q 001391 124 LVQSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSS--I--ILEVH---------SPERCLLYSMKLWGD 189 (1088)
Q Consensus 124 ~~~~l~~h~~~I~~v~f~p~~~d~~-~lasgs~Dg~V~iWd~~~~~--~--~~~~~---------~~~~~~~~s~~~~~~ 189 (1088)
..+.+. |...|.+.+|+| -.. .+++|+.|-+.++|++.... . ...++ .+...-+.++++
T Consensus 171 ~~kvl~-~~~~V~~~~WnP---~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~W--- 243 (524)
T KOG0273|consen 171 KAKVLR-HESEVFICAWNP---LRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDW--- 243 (524)
T ss_pred ceeecc-CCCceEEEecCc---hhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEe---
Confidence 344444 999999999999 444 89999999999999997511 1 11111 222344666665
Q ss_pred CCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCC
Q 001391 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS 269 (1088)
Q Consensus 190 s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~ 269 (1088)
+.+|..||+|..||.+++|+.. +..+..+..|+++|+++.|+.+|.
T Consensus 244 n~~G~~LatG~~~G~~riw~~~----------------------------------G~l~~tl~~HkgPI~slKWnk~G~ 289 (524)
T KOG0273|consen 244 NNDGTLLATGSEDGEARIWNKD----------------------------------GNLISTLGQHKGPIFSLKWNKKGT 289 (524)
T ss_pred cCCCCeEEEeecCcEEEEEecC----------------------------------chhhhhhhccCCceEEEEEcCCCC
Confidence 6789999999999999999986 566778889999999999999999
Q ss_pred EEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEcccC
Q 001391 270 KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347 (1088)
Q Consensus 270 ~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~ 347 (1088)
+|++++.|+++.+||..++.. .. .+.-|..+-.++.|- +..+++.+.|+.|+|+.+ ...++.++.+|+
T Consensus 290 yilS~~vD~ttilwd~~~g~~--------~q--~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~ 359 (524)
T KOG0273|consen 290 YILSGGVDGTTILWDAHTGTV--------KQ--QFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHH 359 (524)
T ss_pred EEEeccCCccEEEEeccCceE--------EE--eeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeeccc
Confidence 999999999999999988533 22 566677776788887 789999999999999999 678899999999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC-CCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEE
Q 001391 348 GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLH 426 (1088)
Q Consensus 348 ~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 426 (1088)
+ +|.++.|+|.+.+|++++.|++++||+... ..... +..|...|..+.
T Consensus 360 g-~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~------------------------------l~~Hskei~t~~ 408 (524)
T KOG0273|consen 360 G-EVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHD------------------------------LQAHSKEIYTIK 408 (524)
T ss_pred C-ceEEEEECCCCceEEEecCCCeeEeeecCCCcchhh------------------------------hhhhccceeeEe
Confidence 9 799999999999999999999999999743 22222 233444556666
Q ss_pred eccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCc
Q 001391 427 LTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVH 506 (1088)
Q Consensus 427 ~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~ 506 (1088)
|+|.|.. .| . +..+..+++++.|++|++||+..+.+
T Consensus 409 wsp~g~v--------------------~~-----------------n-------~~~~~~l~sas~dstV~lwdv~~gv~ 444 (524)
T KOG0273|consen 409 WSPTGPV--------------------TS-----------------N-------PNMNLMLASASFDSTVKLWDVESGVP 444 (524)
T ss_pred ecCCCCc--------------------cC-----------------C-------CcCCceEEEeecCCeEEEEEccCCce
Confidence 6664311 00 0 11235789999999999999988765
Q ss_pred CcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEE
Q 001391 507 TPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCL 586 (1088)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l 586 (1088)
... + ..+...+.. .+|+|+|+|+++|+.||.|.+|+++..+ +.+.+ .-...|..+
T Consensus 445 i~~------f-~kH~~pVys--vafS~~g~ylAsGs~dg~V~iws~~~~~--------------l~~s~--~~~~~Ifel 499 (524)
T KOG0273|consen 445 IHT------L-MKHQEPVYS--VAFSPNGRYLASGSLDGCVHIWSTKTGK--------------LVKSY--QGTGGIFEL 499 (524)
T ss_pred eEe------e-ccCCCceEE--EEecCCCcEEEecCCCCeeEeccccchh--------------eeEee--cCCCeEEEE
Confidence 432 1 112222333 5799999999999999999999998653 33333 235669999
Q ss_pred EeeeCCCEEEEEcCCCcEEEEeCC
Q 001391 587 DASFEDEVLFCGDLRGNLVLFPLL 610 (1088)
Q Consensus 587 ~~spdg~~LatGs~dg~I~Iw~~~ 610 (1088)
.|+.+|.+|.....||.+++-|+.
T Consensus 500 ~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 500 CWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEcCCCCEEEEEecCCCceEEEec
Confidence 999999999999999999998864
No 41
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=2.4e-29 Score=261.69 Aligned_cols=275 Identities=19% Similarity=0.292 Sum_probs=229.0
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEeC-CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC-
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGSG-SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG- 95 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~d-~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g- 95 (1088)
.+|..|.+. |+ |+.|++|++ |...+|+..+-.--..++.|+. .|.++.|+ +++ ..+++++
T Consensus 97 c~V~~v~Wt--Pe----GRRLltgs~SGEFtLWNg~~fnFEtilQaHDs-~Vr~m~ws-------~~g----~wmiSgD~ 158 (464)
T KOG0284|consen 97 CPVNVVRWT--PE----GRRLLTGSQSGEFTLWNGTSFNFETILQAHDS-PVRTMKWS-------HNG----TWMISGDK 158 (464)
T ss_pred cceeeEEEc--CC----CceeEeecccccEEEecCceeeHHHHhhhhcc-cceeEEEc-------cCC----CEEEEcCC
Confidence 579999999 99 899999885 9999999743221122345555 79999999 777 4555544
Q ss_pred CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCC-CcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS-HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 96 d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
++.|++|+.. ...++.+.+|. ..|.+++|+| +...+++++.||+|+|||....+.-..+.
T Consensus 159 gG~iKyWqpn----------------mnnVk~~~ahh~eaIRdlafSp---nDskF~t~SdDg~ikiWdf~~~kee~vL~ 219 (464)
T KOG0284|consen 159 GGMIKYWQPN----------------MNNVKIIQAHHAEAIRDLAFSP---NDSKFLTCSDDGTIKIWDFRMPKEERVLR 219 (464)
T ss_pred CceEEecccc----------------hhhhHHhhHhhhhhhheeccCC---CCceeEEecCCCeEEEEeccCCchhheec
Confidence 8999999987 34455555655 8999999999 88889999999999999998877766665
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
+|. -.+.++.++ |...+||+|+.|+.|++||.+ ++.++..+.+
T Consensus 220 GHg-wdVksvdWH---P~kgLiasgskDnlVKlWDpr---------------------------------Sg~cl~tlh~ 262 (464)
T KOG0284|consen 220 GHG-WDVKSVDWH---PTKGLIASGSKDNLVKLWDPR---------------------------------SGSCLATLHG 262 (464)
T ss_pred cCC-CCcceeccC---CccceeEEccCCceeEeecCC---------------------------------Ccchhhhhhh
Confidence 443 345566664 567799999999999999999 8899999999
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEE
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCR 331 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~ 331 (1088)
|+..|.++.|+|++.+|+|+|.|..++++|+++. +++ +.+.+|...++++.|+ +++|.+|+.||.|.
T Consensus 263 HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m--------kEl--~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvv 332 (464)
T KOG0284|consen 263 HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM--------KEL--FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVV 332 (464)
T ss_pred ccceEEEEEEcCCCCeeEEccCCceEEEEehhHh--------HHH--HHhhcchhhheeeccccccccceeeccCCCceE
Confidence 9999999999999999999999999999999963 333 3889999999999998 68999999999999
Q ss_pred EEcCC-CceeEEE-cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 332 VWGSD-GKQLKMI-KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 332 vWd~~-~~~~~~~-~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
.|.+. .+++..+ .+|.+ .||+++|+|-|.+|++|+.|.++++|.-
T Consensus 333 h~~v~~~~p~~~i~~AHd~-~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 333 HWVVGLEEPLGEIPPAHDG-EIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred EEeccccccccCCCccccc-ceeeeeccccceeEeecCCCcceeeecc
Confidence 99994 5555554 46776 7999999999999999999999999975
No 42
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=4.4e-27 Score=232.98 Aligned_cols=282 Identities=18% Similarity=0.233 Sum_probs=227.8
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC---eeEEEEeeeCCcceEEEEecccccccCCCccceeeEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG---TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg---~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~l 91 (1088)
|.+.|..++++ |- .|.+||+|+ |..|+||+...+ .+...+...+...|..++|+ |.| ++|
T Consensus 13 h~~r~W~~awh--p~---~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAws-------p~g----~~L 76 (312)
T KOG0645|consen 13 HKDRVWSVAWH--PG---KGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWS-------PHG----RYL 76 (312)
T ss_pred CCCcEEEEEec--cC---CceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeec-------CCC----cEE
Confidence 55789999999 74 256888887 799999998853 44445544455579999999 888 677
Q ss_pred EEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC---
Q 001391 92 ALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS--- 167 (1088)
Q Consensus 92 a~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~--- 167 (1088)
++++ |.++.||.-..+. ++++..+.||...|.|++|++ +|.+|||++.|+.|-||.+..+
T Consensus 77 a~aSFD~t~~Iw~k~~~e-------------fecv~~lEGHEnEVK~Vaws~---sG~~LATCSRDKSVWiWe~deddEf 140 (312)
T KOG0645|consen 77 ASASFDATVVIWKKEDGE-------------FECVATLEGHENEVKCVAWSA---SGNYLATCSRDKSVWIWEIDEDDEF 140 (312)
T ss_pred EEeeccceEEEeecCCCc-------------eeEEeeeeccccceeEEEEcC---CCCEEEEeeCCCeEEEEEecCCCcE
Confidence 7766 9999999877544 889999999999999999999 9999999999999999999754
Q ss_pred ceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccccee
Q 001391 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1088)
Q Consensus 168 ~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 247 (1088)
++...++.|... +-.+.+ -|...+|++++.|++|++|+-.. ...-.
T Consensus 141 ec~aVL~~HtqD-VK~V~W---HPt~dlL~S~SYDnTIk~~~~~~------------------------------dddW~ 186 (312)
T KOG0645|consen 141 ECIAVLQEHTQD-VKHVIW---HPTEDLLFSCSYDNTIKVYRDED------------------------------DDDWE 186 (312)
T ss_pred EEEeeecccccc-ccEEEE---cCCcceeEEeccCCeEEEEeecC------------------------------CCCee
Confidence 345566655432 223344 36678999999999999998650 11457
Q ss_pred eeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCC
Q 001391 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGED 327 (1088)
Q Consensus 248 ~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~D 327 (1088)
+.+.+.+|+..|.+++|+|.|.+|+++++|++|+||..... ...-|...+..+.|.+..|++++.|
T Consensus 187 c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~--------------~~~~~sr~~Y~v~W~~~~IaS~ggD 252 (312)
T KOG0645|consen 187 CVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD--------------LSGMHSRALYDVPWDNGVIASGGGD 252 (312)
T ss_pred EEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC--------------cchhcccceEeeeecccceEeccCC
Confidence 88999999999999999999999999999999999997652 3345778899999998899999999
Q ss_pred CcEEEEcCCCc-------ee-EEEcccCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEEcC
Q 001391 328 CTCRVWGSDGK-------QL-KMIKEHIGRGIWRCLYDSL-SSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 328 g~i~vWd~~~~-------~~-~~~~~h~~~~V~~l~~~~d-g~~l~tg~~Dg~I~iwd~~ 378 (1088)
+.|+++..... .+ ..-..|.. .|.++.|+|. .++|++|+.||.|++|.+.
T Consensus 253 ~~i~lf~~s~~~d~p~~~l~~~~~~aHe~-dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 253 DAIRLFKESDSPDEPSWNLLAKKEGAHEV-DVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CEEEEEEecCCCCCchHHHHHhhhccccc-ccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 99999987321 11 23355776 6999999995 6799999999999999873
No 43
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=1.8e-27 Score=239.04 Aligned_cols=280 Identities=20% Similarity=0.320 Sum_probs=232.8
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCC-CeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA-GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t-g~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~ 93 (1088)
|.|.|..+.|+ |+ +.++|+|+ |..|.+|++.. .+-...+++|.+ .|.++.|. +|++ .++.+
T Consensus 46 h~geI~~~~F~--P~----gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsg-AVM~l~~~-------~d~s---~i~S~ 108 (338)
T KOG0265|consen 46 HKGEIYTIKFH--PD----GSCFASGGSDRAIVLWNVYGDCENFWVLKGHSG-AVMELHGM-------RDGS---HILSC 108 (338)
T ss_pred CcceEEEEEEC--CC----CCeEeecCCcceEEEEeccccccceeeeccccc-eeEeeeec-------cCCC---EEEEe
Confidence 67999999999 99 99999977 89999999643 344566778777 69999999 7773 66666
Q ss_pred ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEe
Q 001391 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1088)
Q Consensus 94 ~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~ 173 (1088)
+.|++++.||.++ .+.++.+++|.+-|+++..+. -...++.+|+.|+++++||+++...++++
T Consensus 109 gtDk~v~~wD~~t---------------G~~~rk~k~h~~~vNs~~p~r--rg~~lv~SgsdD~t~kl~D~R~k~~~~t~ 171 (338)
T KOG0265|consen 109 GTDKTVRGWDAET---------------GKRIRKHKGHTSFVNSLDPSR--RGPQLVCSGSDDGTLKLWDIRKKEAIKTF 171 (338)
T ss_pred cCCceEEEEeccc---------------ceeeehhccccceeeecCccc--cCCeEEEecCCCceEEEEeecccchhhcc
Confidence 7799999999996 568889999999999999443 23457888999999999999998888777
Q ss_pred ccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe
Q 001391 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1088)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1088)
...- .+.++.| ..++..+.+|+.|+.|++||++ .....+.+.
T Consensus 172 ~~ky--qltAv~f---~d~s~qv~sggIdn~ikvWd~r---------------------------------~~d~~~~ls 213 (338)
T KOG0265|consen 172 ENKY--QLTAVGF---KDTSDQVISGGIDNDIKVWDLR---------------------------------KNDGLYTLS 213 (338)
T ss_pred ccce--eEEEEEe---cccccceeeccccCceeeeccc---------------------------------cCcceEEee
Confidence 4432 3445554 5678899999999999999998 677889999
Q ss_pred CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCc----ceEEEEEC--CCEEEEEeCC
Q 001391 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA----RVWDCCLT--DSFIITAGED 327 (1088)
Q Consensus 254 gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~----~I~~v~~~--~~~l~sg~~D 327 (1088)
||.+.|+.+..+|+|.++.+-+.|.++++||++.... ..++++ .+.+|.- ....++|+ +..+-.|+.|
T Consensus 214 Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p----~~R~v~--if~g~~hnfeknlL~cswsp~~~~i~ags~d 287 (338)
T KOG0265|consen 214 GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP----SQRCVK--IFQGHIHNFEKNLLKCSWSPNGTKITAGSAD 287 (338)
T ss_pred cccCceeeEEeccCCCccccccccceEEEEEecccCC----CCceEE--EeecchhhhhhhcceeeccCCCCcccccccc
Confidence 9999999999999999999999999999999987533 123454 5555533 23566777 5688889999
Q ss_pred CcEEEEcCC-CceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEE
Q 001391 328 CTCRVWGSD-GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKV 374 (1088)
Q Consensus 328 g~i~vWd~~-~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~i 374 (1088)
..+++||.. .+.+..+.+|.+ .|..++|+|...+|.+++.|.+|.+
T Consensus 288 r~vyvwd~~~r~~lyklpGh~g-svn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 288 RFVYVWDTTSRRILYKLPGHYG-SVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred ceEEEeecccccEEEEcCCcce-eEEEeeecCCCcEEEEeccCceeEe
Confidence 999999994 478899999999 7999999999999999999999876
No 44
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=3.1e-29 Score=254.74 Aligned_cols=281 Identities=19% Similarity=0.295 Sum_probs=224.3
Q ss_pred cceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccC
Q 001391 66 IRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (1088)
Q Consensus 66 ~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~ 145 (1088)
.+|.++++. |+ .++....|++|+|||.+. ..+...+.||++.|.|+.|
T Consensus 198 kgVYClQYD--------D~----kiVSGlrDnTikiWD~n~---------------~~c~~~L~GHtGSVLCLqy----- 245 (499)
T KOG0281|consen 198 KGVYCLQYD--------DE----KIVSGLRDNTIKIWDKNS---------------LECLKILTGHTGSVLCLQY----- 245 (499)
T ss_pred CceEEEEec--------ch----hhhcccccCceEEecccc---------------HHHHHhhhcCCCcEEeeec-----
Confidence 468999985 32 344444599999999884 5678889999999999999
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCc
Q 001391 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (1088)
Q Consensus 146 d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~ 225 (1088)
+.+.|++|+.|.+|++||+++++.+.++-+|...+ ..+.| +..++++++.|.+|.+||+...
T Consensus 246 d~rviisGSSDsTvrvWDv~tge~l~tlihHceaV-Lhlrf-----~ng~mvtcSkDrsiaVWdm~sp------------ 307 (499)
T KOG0281|consen 246 DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAV-LHLRF-----SNGYMVTCSKDRSIAVWDMASP------------ 307 (499)
T ss_pred cceEEEecCCCceEEEEeccCCchhhHHhhhccee-EEEEE-----eCCEEEEecCCceeEEEeccCc------------
Confidence 66799999999999999999999999887776553 34554 3568999999999999999811
Q ss_pred cCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeee
Q 001391 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (1088)
Q Consensus 226 s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~ 305 (1088)
......+.+.||...|+.+.|+ .++++++|.|++|++|++.+. +.+. ++.
T Consensus 308 ------------------s~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~--------efvR--tl~ 357 (499)
T KOG0281|consen 308 ------------------TDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTC--------EFVR--TLN 357 (499)
T ss_pred ------------------hHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccce--------eeeh--hhh
Confidence 1234556678999999999995 459999999999999999995 5554 899
Q ss_pred ccCcceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCc
Q 001391 306 GHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGS 384 (1088)
Q Consensus 306 ~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~ 384 (1088)
+|...|.|+.+.+.++++|+.|.+||+||+ .|.+++.+++|.. -|.++.|.. +.+++|+.||+|++||+....-.
T Consensus 358 gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe-LvRciRFd~--krIVSGaYDGkikvWdl~aaldp- 433 (499)
T KOG0281|consen 358 GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE-LVRCIRFDN--KRIVSGAYDGKIKVWDLQAALDP- 433 (499)
T ss_pred cccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHH-hhhheeecC--ceeeeccccceEEEEecccccCC-
Confidence 999999999999999999999999999999 8999999999998 699999964 57999999999999999542111
Q ss_pred ccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccC
Q 001391 385 LESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDM 450 (1088)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~ 450 (1088)
..+.....+..+-.|.+.|-.+.|.. -++++++.+..|+.|++.+.
T Consensus 434 -------------------ra~~~~~Cl~~lv~hsgRVFrLQFD~-fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 434 -------------------RAPASTLCLRTLVEHSGRVFRLQFDE-FQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred -------------------cccccchHHHhhhhccceeEEEeecc-eEEEeccCCCeEEEEEcCCC
Confidence 00112222333345566777777753 36777788888887776554
No 45
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=6.6e-27 Score=240.81 Aligned_cols=302 Identities=15% Similarity=0.150 Sum_probs=243.5
Q ss_pred CCCCCceEEecCCCc-------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEE
Q 001391 1 MGKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~-------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~ 72 (1088)
|+|....||++.+|. |-..|+|+.|+ .| +.|||+|. +|.|+||..+++.....+.. +...|.=+.
T Consensus 83 GgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fs--hd----gtlLATGdmsG~v~v~~~stg~~~~~~~~-e~~dieWl~ 155 (399)
T KOG0296|consen 83 GGDDLAFLWDISTGEFAGELTGHKDSVTCCSFS--HD----GTLLATGDMSGKVLVFKVSTGGEQWKLDQ-EVEDIEWLK 155 (399)
T ss_pred CCCceEEEEEccCCcceeEecCCCCceEEEEEc--cC----ceEEEecCCCccEEEEEcccCceEEEeec-ccCceEEEE
Confidence 678889999999998 66789999999 77 89999999 89999999999988888763 333577778
Q ss_pred ecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEE
Q 001391 73 CNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (1088)
Q Consensus 73 ~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~las 152 (1088)
|+ |.+ +.++|.+.|+.+-+|.+... ...+.+.||+.++++-.|.| +|+.+++
T Consensus 156 WH-------p~a---~illAG~~DGsvWmw~ip~~---------------~~~kv~~Gh~~~ct~G~f~p---dGKr~~t 207 (399)
T KOG0296|consen 156 WH-------PRA---HILLAGSTDGSVWMWQIPSQ---------------ALCKVMSGHNSPCTCGEFIP---DGKRILT 207 (399)
T ss_pred ec-------ccc---cEEEeecCCCcEEEEECCCc---------------ceeeEecCCCCCcccccccC---CCceEEE
Confidence 88 555 25666666999999999852 46677889999999999999 9999999
Q ss_pred EEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCC
Q 001391 153 GCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (1088)
Q Consensus 153 gs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~ 232 (1088)
|..||+|++||..+++.+..+...+......+.+ +..+..+.+|..++.+++-...+++.....
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~---~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~------------- 271 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQAEGLELPCISL---NLAGSTLTKGNSEGVACGVNNGSGKVVNCN------------- 271 (399)
T ss_pred EecCceEEEEecCCCceeEEecccccCcCCcccc---ccccceeEeccCCccEEEEccccceEEEec-------------
Confidence 9999999999999999988887544333333333 456788999999999988877632222110
Q ss_pred CCceeEecccccceeeeEEEeCCCCCEEEEEEcC---CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCc
Q 001391 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS---CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA 309 (1088)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp---~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~ 309 (1088)
.+.......+++..+.+|.+.| .-++.++|+.||+|.|||+...+. +....|..
T Consensus 272 ------------n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~-----------R~~c~he~ 328 (399)
T KOG0296|consen 272 ------------NGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL-----------RHICEHED 328 (399)
T ss_pred ------------CCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh-----------heeccCCC
Confidence 0001111224666666666555 456789999999999999988543 36678999
Q ss_pred ceEEEEECC-CEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 310 RVWDCCLTD-SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 310 ~I~~v~~~~-~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
.|..+.|.+ .+|++++.||.|+.||. +|+++.++.+|.. +|..++++|+.++++|++.|++.++++.
T Consensus 329 ~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~-~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 329 GVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQM-GILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred ceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCch-heeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 999999996 89999999999999999 9999999999998 7999999999999999999999999986
No 46
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=1.5e-27 Score=269.01 Aligned_cols=236 Identities=20% Similarity=0.343 Sum_probs=203.7
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCC-------------------------------CeeEEEEeeeCC
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA-------------------------------GTLIRPFQVFHG 65 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t-------------------------------g~~~~~~~~~~~ 65 (1088)
..++|..|+ +| .++||+|. |..|++|.+.. +....++.+|.+
T Consensus 379 ~~v~ca~fS--dd----ssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G 452 (707)
T KOG0263|consen 379 QGVTCAEFS--DD----SSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG 452 (707)
T ss_pred CcceeEeec--CC----cchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence 358899999 88 78999998 79999999862 122345667777
Q ss_pred cceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccC
Q 001391 66 IRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (1088)
Q Consensus 66 ~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~ 145 (1088)
+|.+..|+ |+.+ .+|.++.|+++|+|.+.+ ...+-.++||..+|+++.|+|
T Consensus 453 -PVyg~sFs-------Pd~r---fLlScSED~svRLWsl~t---------------~s~~V~y~GH~~PVwdV~F~P--- 503 (707)
T KOG0263|consen 453 -PVYGCSFS-------PDRR---FLLSCSEDSSVRLWSLDT---------------WSCLVIYKGHLAPVWDVQFAP--- 503 (707)
T ss_pred -ceeeeeec-------cccc---ceeeccCCcceeeeeccc---------------ceeEEEecCCCcceeeEEecC---
Confidence 89999999 6653 666667799999999995 567778889999999999999
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCc
Q 001391 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (1088)
Q Consensus 146 d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~ 225 (1088)
-|-++|||+.|++.++|..........+.+|-.. +-++.| .|+..++++|+.|.++++||+.
T Consensus 504 ~GyYFatas~D~tArLWs~d~~~PlRifaghlsD-V~cv~F---HPNs~Y~aTGSsD~tVRlWDv~-------------- 565 (707)
T KOG0263|consen 504 RGYYFATASHDQTARLWSTDHNKPLRIFAGHLSD-VDCVSF---HPNSNYVATGSSDRTVRLWDVS-------------- 565 (707)
T ss_pred CceEEEecCCCceeeeeecccCCchhhhcccccc-cceEEE---CCcccccccCCCCceEEEEEcC--------------
Confidence 9999999999999999999987777776665432 334455 4789999999999999999998
Q ss_pred cCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeee
Q 001391 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (1088)
Q Consensus 226 s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~ 305 (1088)
++..++.|.||.++|.+++|+|+|++|++|+.|+.|.+||+.+++ .+. .+.
T Consensus 566 -------------------~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~--------~v~--~l~ 616 (707)
T KOG0263|consen 566 -------------------TGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS--------LVK--QLK 616 (707)
T ss_pred -------------------CCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc--------chh--hhh
Confidence 788899999999999999999999999999999999999999963 343 788
Q ss_pred ccCcceEEEEEC--CCEEEEEeCCCcEEEEcC
Q 001391 306 GHNARVWDCCLT--DSFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 306 ~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~ 335 (1088)
+|++.|.++.|+ +..|++|+.|++|++||+
T Consensus 617 ~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 617 GHTGTIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred cccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 999999999998 899999999999999998
No 47
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=4.3e-25 Score=244.17 Aligned_cols=478 Identities=13% Similarity=0.142 Sum_probs=326.0
Q ss_pred CCCCceEEecCCCce---------eeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEE
Q 001391 2 GKKDLSEWRLDVGQY---------LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~~---------~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~ 72 (1088)
.||.|.+|++..+-+ .+.|.+++|+ +. +++.-+|-+|.|.-||+.+++.+..+....+ .|++|+
T Consensus 45 t~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~--e~----~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg-~IWsia 117 (691)
T KOG2048|consen 45 TDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA--EG----GRLFSSGLSGSITEWDLHTLKQKYNIDSNGG-AIWSIA 117 (691)
T ss_pred cCCcEEEEccCCCceeeEEEecCCCCceeeEEEc--cC----CeEEeecCCceEEEEecccCceeEEecCCCc-ceeEEE
Confidence 478999999998763 3458899999 76 7887778899999999999999988887555 799999
Q ss_pred ecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEE
Q 001391 73 CNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (1088)
Q Consensus 73 ~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~las 152 (1088)
.+ |.+. .+.+.+.||.+..++...+. .+.-+.|....++|.++.|+| ++..|++
T Consensus 118 i~-------p~~~---~l~IgcddGvl~~~s~~p~~-------------I~~~r~l~rq~sRvLslsw~~---~~~~i~~ 171 (691)
T KOG2048|consen 118 IN-------PENT---ILAIGCDDGVLYDFSIGPDK-------------ITYKRSLMRQKSRVLSLSWNP---TGTKIAG 171 (691)
T ss_pred eC-------Cccc---eEEeecCCceEEEEecCCce-------------EEEEeecccccceEEEEEecC---CccEEEe
Confidence 99 4441 55555678977777766543 566667777789999999999 9999999
Q ss_pred EEcCCcEEEEEcCCCceEEE-------eccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCc
Q 001391 153 GCSDNSIRVWDISNSSIILE-------VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (1088)
Q Consensus 153 gs~Dg~V~iWd~~~~~~~~~-------~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~ 225 (1088)
|+.||.|++||...+..+.. +...+.+++|++.+. ....|++|..-|+|++||..
T Consensus 172 Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L----rd~tI~sgDS~G~V~FWd~~-------------- 233 (691)
T KOG2048|consen 172 GSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL----RDSTIASGDSAGTVTFWDSI-------------- 233 (691)
T ss_pred cccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe----ecCcEEEecCCceEEEEccc--------------
Confidence 99999999999999877662 223467889999885 34589999999999999998
Q ss_pred cCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeee
Q 001391 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (1088)
Q Consensus 226 s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~ 305 (1088)
.+..++.+..|...|.+++..+++.++.+++.|+.|..+...+... +.+......
T Consensus 234 -------------------~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~------~wv~~~~r~ 288 (691)
T KOG2048|consen 234 -------------------FGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS------EWVINSRRD 288 (691)
T ss_pred -------------------CcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc------ceeeecccc
Confidence 7788888999999999999999999999999999999998877533 222212556
Q ss_pred ccCcceEEEEECCCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCC--------EEEEEc
Q 001391 306 GHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSA--------IKVHQF 377 (1088)
Q Consensus 306 ~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~--------I~iwd~ 377 (1088)
.|...|.+++..+..+++|+.|.++.+-.... ..+..|.. -...|.+..+..+..+.. +.+|.+
T Consensus 289 ~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~---~~~~~h~~-----~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrl 360 (691)
T KOG2048|consen 289 LHAHDVRSMAVIENALISGGRDFTLAICSSRE---FKNMDHRQ-----KNLFPASDRVSVAPENRLLVLWKAHGVDLWRL 360 (691)
T ss_pred CCcccceeeeeecceEEecceeeEEEEccccc---cCchhhhc-----cccccccceeecCccceEEEEeccccccceec
Confidence 78889999999999999999999998866522 11112221 111233333344444444 444444
Q ss_pred CCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEE
Q 001391 378 QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNK 457 (1088)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~ 457 (1088)
.....+ ++. +...++ .........|.+.+.+|+|.+++.+.-..+..+++......+-..
T Consensus 361 GS~~~~---g~~------~~~~Ll-----------kl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~ 420 (691)
T KOG2048|consen 361 GSVILQ---GEY------NYIHLL-----------KLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVIN 420 (691)
T ss_pred cCcccc---ccc------Chhhhe-----------eeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEE
Confidence 221110 000 111111 122223457999999999999888765555555554433322211
Q ss_pred eeeecCC-cceEEEecCCCCCCCcCCCCCeEEEec-CCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCC
Q 001391 458 ILQVSEG-MPIICMDLLSNEPKYPCGIDDWVALGD-GKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGH 535 (1088)
Q Consensus 458 ~~~~~~~-~~i~~l~~~~~~~~~s~~~~~~la~g~-~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 535 (1088)
+-..... .....+. +.. +.+.++..+ ....+.++++++.+......+... .... ... ....|++|
T Consensus 421 v~~~~~~~~~a~~i~-------fti-d~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~---~~~~-~I~-~l~~SsdG 487 (691)
T KOG2048|consen 421 VDDVPLALLDASAIS-------FTI-DKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ---AKCP-SIS-RLVVSSDG 487 (691)
T ss_pred eccchhhhccceeeE-------EEe-cCceEEEEecccceeEEEEecCcchhhhhccccc---cCCC-cce-eEEEcCCC
Confidence 1111110 0111111 111 234444444 677888888876554322221111 0111 111 24578999
Q ss_pred eEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEee-eCCCEEEEEcCCCcEEEEeCCc
Q 001391 536 RFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDAS-FEDEVLFCGDLRGNLVLFPLLR 611 (1088)
Q Consensus 536 ~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~s-pdg~~LatGs~dg~I~Iw~~~~ 611 (1088)
+|+++.+.+|.|.+|+++.... . .+...-...+|+++++ ++..-|+.+..++.++-||++.
T Consensus 488 ~yiaa~~t~g~I~v~nl~~~~~------------~---~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~ 549 (691)
T KOG2048|consen 488 NYIAAISTRGQIFVYNLETLES------------H---LLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEA 549 (691)
T ss_pred CEEEEEeccceEEEEEccccee------------e---cchhccCcceeeeeccccccCcEEEEecCCeEEEEecch
Confidence 9999999999999999985531 1 1111224669999999 5677899999999999999954
No 48
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.1e-27 Score=244.13 Aligned_cols=257 Identities=20% Similarity=0.350 Sum_probs=215.1
Q ss_pred CCCCCceEEecCCCc-------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCC-CeeEEEEeeeCCcceEEE
Q 001391 1 MGKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA-GTLIRPFQVFHGIRLHGI 71 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~-------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t-g~~~~~~~~~~~~~V~~i 71 (1088)
++|.+|++||..+|+ |...|..|+|+ .. |++|++++ |=.+++||.++ -++++...+|+- .|.++
T Consensus 127 s~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~--a~----Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h-~vS~V 199 (406)
T KOG0295|consen 127 SEDATIKVFDTETGELERSLRGHTDSVFDISFD--AS----GKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEH-GVSSV 199 (406)
T ss_pred cCCceEEEEEccchhhhhhhhccccceeEEEEe--cC----ccEEEecCCccchhheeHHHHHHHHHHhcCccc-ceeeE
Confidence 479999999999998 77889999999 44 89999998 55599999887 467777777665 69999
Q ss_pred EecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEE
Q 001391 72 SCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1088)
Q Consensus 72 ~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la 151 (1088)
.|- |-| +.++.++.|++|+.|++.+ +.++.++.+|..||..++.+. ||.++|
T Consensus 200 ~f~-------P~g---d~ilS~srD~tik~We~~t---------------g~cv~t~~~h~ewvr~v~v~~---DGti~A 251 (406)
T KOG0295|consen 200 FFL-------PLG---DHILSCSRDNTIKAWECDT---------------GYCVKTFPGHSEWVRMVRVNQ---DGTIIA 251 (406)
T ss_pred EEE-------ecC---CeeeecccccceeEEeccc---------------ceeEEeccCchHhEEEEEecC---CeeEEE
Confidence 999 444 2666677799999999996 568899999999999999999 999999
Q ss_pred EEEcCCcEEEEEcCCCceEEEeccC---CceeEEEEeee--------cCCCCCcEEEEEecCCeEEEEEeccCccccCCC
Q 001391 152 IGCSDNSIRVWDISNSSIILEVHSP---ERCLLYSMKLW--------GDNLEALRIASGTIYNEIIVWKVDWEHVAPLLN 220 (1088)
Q Consensus 152 sgs~Dg~V~iWd~~~~~~~~~~~~~---~~~~~~s~~~~--------~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~ 220 (1088)
+++.|.+|++|-+.++++...+..+ ..++.+.-... +....+..+.+++.|++|++||+.
T Consensus 252 s~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~--------- 322 (406)
T KOG0295|consen 252 SCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS--------- 322 (406)
T ss_pred ecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc---------
Confidence 9999999999999999665544433 33433321100 011234689999999999999999
Q ss_pred CCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeee
Q 001391 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG 300 (1088)
Q Consensus 221 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~ 300 (1088)
++.++.++.||..+|..++|+|.|+||+|+.+|+++++||+.+. ++.+
T Consensus 323 ------------------------tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~--------~cmk 370 (406)
T KOG0295|consen 323 ------------------------TGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL--------QCMK 370 (406)
T ss_pred ------------------------CCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc--------eeee
Confidence 88999999999999999999999999999999999999999996 4454
Q ss_pred ceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC
Q 001391 301 SSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 301 ~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~ 335 (1088)
++..|+.-++++.|+ -.+++||+-|.++++|..
T Consensus 371 --~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 371 --TLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred --ccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 777999999999998 469999999999999963
No 49
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=2.1e-26 Score=269.34 Aligned_cols=281 Identities=21% Similarity=0.366 Sum_probs=236.4
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCe--eEEEEeeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~--~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
+...|+++.|+ |+ +++++++. ++.+++|+..+++ .++.+.+|.. .|.+++|+ ||++ .++.
T Consensus 158 ~~~sv~~~~fs--~~----g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~-~v~~~~fs-------~d~~---~l~s 220 (456)
T KOG0266|consen 158 ECPSVTCVDFS--PD----GRALAAASSDGLIRIWKLEGIKSNLLRELSGHTR-GVSDVAFS-------PDGS---YLLS 220 (456)
T ss_pred ccCceEEEEEc--CC----CCeEEEccCCCcEEEeecccccchhhcccccccc-ceeeeEEC-------CCCc---EEEE
Confidence 45789999999 99 88888886 8999999998877 7777777665 79999999 8873 4445
Q ss_pred EECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEE
Q 001391 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1088)
Q Consensus 93 ~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~ 172 (1088)
++.|++++|||+... ...++++++|...|++++|+| +++++++|+.|++|+|||+.+++++..
T Consensus 221 ~s~D~tiriwd~~~~--------------~~~~~~l~gH~~~v~~~~f~p---~g~~i~Sgs~D~tvriWd~~~~~~~~~ 283 (456)
T KOG0266|consen 221 GSDDKTLRIWDLKDD--------------GRNLKTLKGHSTYVTSVAFSP---DGNLLVSGSDDGTVRIWDVRTGECVRK 283 (456)
T ss_pred ecCCceEEEeeccCC--------------CeEEEEecCCCCceEEEEecC---CCCEEEEecCCCcEEEEeccCCeEEEe
Confidence 556999999999432 478899999999999999999 999999999999999999999999999
Q ss_pred eccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccccee--eeE
Q 001391 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV--NLF 250 (1088)
Q Consensus 173 ~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~--~~~ 250 (1088)
+..|... +.++++ ++++..|++++.|+.|++||+. ++. ++.
T Consensus 284 l~~hs~~-is~~~f---~~d~~~l~s~s~d~~i~vwd~~---------------------------------~~~~~~~~ 326 (456)
T KOG0266|consen 284 LKGHSDG-ISGLAF---SPDGNLLVSASYDGTIRVWDLE---------------------------------TGSKLCLK 326 (456)
T ss_pred eeccCCc-eEEEEE---CCCCCEEEEcCCCccEEEEECC---------------------------------CCceeeee
Confidence 9888764 445554 7899999999999999999998 444 456
Q ss_pred EEeCCCCC--EEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEE---EEC--CCEEEE
Q 001391 251 RLVGHEGS--IFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDC---CLT--DSFIIT 323 (1088)
Q Consensus 251 ~~~gh~~~--V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v---~~~--~~~l~s 323 (1088)
.+.+++.. +..+.|+|+++++++++.|+.+++||+..... .. ...+|...+.+. ... +.++++
T Consensus 327 ~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~--------~~--~~~~~~~~~~~~~~~~~~~~~~~i~s 396 (456)
T KOG0266|consen 327 LLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS--------VG--TYTGHSNLVRCIFSPTLSTGGKLIYS 396 (456)
T ss_pred cccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcc--------ee--eecccCCcceeEecccccCCCCeEEE
Confidence 66777666 99999999999999999999999999998543 32 566666654222 222 689999
Q ss_pred EeCCCcEEEEcC-CCceeEEEccc-CCCCeEEEEEcCCCCEEEEEe--CCCCEEEEEcC
Q 001391 324 AGEDCTCRVWGS-DGKQLKMIKEH-IGRGIWRCLYDSLSSLLVTAG--FDSAIKVHQFQ 378 (1088)
Q Consensus 324 g~~Dg~i~vWd~-~~~~~~~~~~h-~~~~V~~l~~~~dg~~l~tg~--~Dg~I~iwd~~ 378 (1088)
|++|+.|++|+. ++..+..+.+| .. .+..+.+++..+++++++ .|+.+++|..+
T Consensus 397 g~~d~~v~~~~~~s~~~~~~l~~h~~~-~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 397 GSEDGSVYVWDSSSGGILQRLEGHSKA-AVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EeCCceEEEEeCCccchhhhhcCCCCC-ceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 999999999999 68888899999 65 699999999999999998 78999999763
No 50
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=3.3e-25 Score=244.33 Aligned_cols=278 Identities=23% Similarity=0.441 Sum_probs=232.8
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.++|++++|+ |+ +++|++|+ ++.|++||+.+++.+..+..+.. .+..+.|+ ++++ .+++++
T Consensus 8 h~~~i~~~~~~--~~----~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~-~i~~~~~~-------~~~~---~l~~~~ 70 (289)
T cd00200 8 HTGGVTCVAFS--PD----GKLLATGSGDGTIKVWDLETGELLRTLKGHTG-PVRDVAAS-------ADGT---YLASGS 70 (289)
T ss_pred cCCCEEEEEEc--CC----CCEEEEeecCcEEEEEEeeCCCcEEEEecCCc-ceeEEEEC-------CCCC---EEEEEc
Confidence 56899999999 98 88999988 79999999999888888887665 68899999 6652 444445
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.++.|++|++... +....+..|...|.++.|+| ++.++++++.|+.|++||+.+++....+.
T Consensus 71 ~~~~i~i~~~~~~---------------~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 132 (289)
T cd00200 71 SDKTIRLWDLETG---------------ECVRTLTGHTSYVSSVAFSP---DGRILSSSSRDKTIKVWDVETGKCLTTLR 132 (289)
T ss_pred CCCeEEEEEcCcc---------------cceEEEeccCCcEEEEEEcC---CCCEEEEecCCCeEEEEECCCcEEEEEec
Confidence 5999999999842 34556678888999999999 88888888889999999999888877776
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
.+.. .+.++.+ .+++.++++++.++.|++||+. ..+.+..+..
T Consensus 133 ~~~~-~i~~~~~---~~~~~~l~~~~~~~~i~i~d~~---------------------------------~~~~~~~~~~ 175 (289)
T cd00200 133 GHTD-WVNSVAF---SPDGTFVASSSQDGTIKLWDLR---------------------------------TGKCVATLTG 175 (289)
T ss_pred cCCC-cEEEEEE---cCcCCEEEEEcCCCcEEEEEcc---------------------------------ccccceeEec
Confidence 4432 3556665 4567888888889999999998 5666777889
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEE
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRV 332 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~v 332 (1088)
|...|.++.|+|+++.+++++.|+.|++||+...+ .+. .+..|...+.+++|+ +.++++++.||.+++
T Consensus 176 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--------~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i 245 (289)
T cd00200 176 HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK--------CLG--TLRGHENGVNSVAFSPDGYLLASGSEDGTIRV 245 (289)
T ss_pred CccccceEEECCCcCEEEEecCCCcEEEEECCCCc--------eec--chhhcCCceEEEEEcCCCcEEEEEcCCCcEEE
Confidence 99999999999999999999999999999998743 232 445788899999998 467777777999999
Q ss_pred EcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 001391 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 333 Wd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd 376 (1088)
|+. .++.+..+..|.. .|.+++|+|++.+|++++.||.+++|+
T Consensus 246 ~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 246 WDLRTGECVQTLSGHTN-SVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEcCCceeEEEccccCC-cEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999 5788888888887 699999999999999999999999996
No 51
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.1e-23 Score=229.55 Aligned_cols=507 Identities=14% Similarity=0.138 Sum_probs=327.8
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC-eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG-TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg-~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
..+|+||||+ .. .+.||++- +|.|.||++..+ -+...+.+++...|.+++|+ +.+ +++.++
T Consensus 25 Ps~I~slA~s--~k----S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-------e~~----RLFS~g 87 (691)
T KOG2048|consen 25 PSEIVSLAYS--HK----SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-------EGG----RLFSSG 87 (691)
T ss_pred ccceEEEEEe--cc----CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-------cCC----eEEeec
Confidence 4779999999 55 45677776 899999999876 45567778887789999998 555 788888
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.+++|.-||+.+ ++....+....+.||+++.+| .+..++.|+.||.+...+...++......
T Consensus 88 ~sg~i~EwDl~~---------------lk~~~~~d~~gg~IWsiai~p---~~~~l~IgcddGvl~~~s~~p~~I~~~r~ 149 (691)
T KOG2048|consen 88 LSGSITEWDLHT---------------LKQKYNIDSNGGAIWSIAINP---ENTILAIGCDDGVLYDFSIGPDKITYKRS 149 (691)
T ss_pred CCceEEEEeccc---------------CceeEEecCCCcceeEEEeCC---ccceEEeecCCceEEEEecCCceEEEEee
Confidence 899999999985 455666667779999999999 88999999999988888888877654433
Q ss_pred -cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe
Q 001391 175 -SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1088)
Q Consensus 175 -~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1088)
....+.+.++.+ .+++..|++|+.||.|++||..... ++.+-. . .+-.+.
T Consensus 150 l~rq~sRvLslsw---~~~~~~i~~Gs~Dg~Iriwd~~~~~---------------------t~~~~~----~-~~d~l~ 200 (691)
T KOG2048|consen 150 LMRQKSRVLSLSW---NPTGTKIAGGSIDGVIRIWDVKSGQ---------------------TLHIIT----M-QLDRLS 200 (691)
T ss_pred cccccceEEEEEe---cCCccEEEecccCceEEEEEcCCCc---------------------eEEEee----e-cccccc
Confidence 344566778877 6888899999999999999998211 000000 0 011111
Q ss_pred -CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcE
Q 001391 254 -GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTC 330 (1088)
Q Consensus 254 -gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i 330 (1088)
+-.--|++|.|..+ ..+++|...|+|.+||...+. .++ ....|.+.|.+++.. ++.+++++.|+.+
T Consensus 201 k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gT--------Liq--S~~~h~adVl~Lav~~~~d~vfsaGvd~~i 269 (691)
T KOG2048|consen 201 KREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGT--------LIQ--SHSCHDADVLALAVADNEDRVFSAGVDPKI 269 (691)
T ss_pred cCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcc--------hhh--hhhhhhcceeEEEEcCCCCeEEEccCCCce
Confidence 23345788888855 468999999999999998864 333 667889999999998 5899999999999
Q ss_pred EEEcCCCc-e----eEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeee
Q 001391 331 RVWGSDGK-Q----LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKI 405 (1088)
Q Consensus 331 ~vWd~~~~-~----~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1088)
..+...+. . ......|.. -|.+++..++ .|++||.|..+.+-..... ....|.....+.
T Consensus 270 i~~~~~~~~~~wv~~~~r~~h~h-dvrs~av~~~--~l~sgG~d~~l~i~~s~~~---~~~~h~~~~~~p---------- 333 (691)
T KOG2048|consen 270 IQYSLTTNKSEWVINSRRDLHAH-DVRSMAVIEN--ALISGGRDFTLAICSSREF---KNMDHRQKNLFP---------- 333 (691)
T ss_pred EEEEecCCccceeeeccccCCcc-cceeeeeecc--eEEecceeeEEEEcccccc---Cchhhhcccccc----------
Confidence 99888433 1 122344555 5999999887 7999999998887655321 111111000000
Q ss_pred CCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCc---ceeEEe--eeecCCcceEEEecCCCCCCCc
Q 001391 406 PNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDS---VNWNKI--LQVSEGMPIICMDLLSNEPKYP 480 (1088)
Q Consensus 406 ~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~---~~~~~~--~~~~~~~~i~~l~~~~~~~~~s 480 (1088)
+. ..+...|..++++.-....+..|.+-.... .....+ +...+...|.+.++.
T Consensus 334 ------------~~---~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiS------- 391 (691)
T KOG2048|consen 334 ------------AS---DRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAIS------- 391 (691)
T ss_pred ------------cc---ceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccC-------
Confidence 00 011122333444443333333333222100 010111 122334567777774
Q ss_pred CCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEEC-CCCeEEEEecCCCCCcc
Q 001391 481 CGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTAD-PKGRLKLWQLCDPFSSV 559 (1088)
Q Consensus 481 ~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~-~dg~i~vwd~~~~~~~~ 559 (1088)
|++++|+.+.- .+.++|.+............. .+....-.....++-|+..++.++ ....+.+++++.+....
T Consensus 392 -Pdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~----~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~ke 465 (691)
T KOG2048|consen 392 -PDGNLIAISTV-SRTKIYRLQPDPNVKVINVDD----VPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKE 465 (691)
T ss_pred -CCCCEEEEeec-cceEEEEeccCcceeEEEecc----chhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhh
Confidence 45689988874 477888886533222111110 111111112234556666666555 66777777776543211
Q ss_pred cccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccC-cceeeccccccc
Q 001391 560 CYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVS-PLNYFKGAHGIS 638 (1088)
Q Consensus 560 ~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~-~~~~~~g~hg~~ 638 (1088)
.. ..-..+-...|+.+..||+|++||..+.+|.|.+|++++... ..+. .+. .
T Consensus 466 l~-----------~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~--------~~l~~rln--------~ 518 (691)
T KOG2048|consen 466 LK-----------SIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLES--------HLLKVRLN--------I 518 (691)
T ss_pred hh-----------ccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEccccee--------ecchhccC--------c
Confidence 11 000113456799999999999999999999999999986432 0111 111 3
Q ss_pred ceeEEEEEeccCCceEEEEecCCCeEEEEEeec
Q 001391 639 TVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDK 671 (1088)
Q Consensus 639 ~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~~~ 671 (1088)
.||.+++.+. +...|+.+-.|+.+.-++++.
T Consensus 519 ~vTa~~~~~~--~~~~lvvats~nQv~efdi~~ 549 (691)
T KOG2048|consen 519 DVTAAAFSPF--VRNRLVVATSNNQVFEFDIEA 549 (691)
T ss_pred ceeeeecccc--ccCcEEEEecCCeEEEEecch
Confidence 5888888853 334577777788888888844
No 52
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=5.5e-25 Score=277.19 Aligned_cols=284 Identities=18% Similarity=0.249 Sum_probs=221.2
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC----e----eEEEEeeeCCcceEEEEecccccccCCCccc
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG----T----LIRPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg----~----~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~ 86 (1088)
|.+.|++++|+ |+ +.+||+|+ |+.|+|||..+. . .+..+.. + ..|.+++|++ +++
T Consensus 482 ~~~~V~~i~fs--~d----g~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~-~~v~~l~~~~------~~~-- 545 (793)
T PLN00181 482 SSNLVCAIGFD--RD----GEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-R-SKLSGICWNS------YIK-- 545 (793)
T ss_pred CCCcEEEEEEC--CC----CCEEEEEeCCCEEEEEECCcccccccccccceEEecc-c-CceeeEEecc------CCC--
Confidence 66789999999 99 88999887 799999997542 1 1222332 2 3689999983 233
Q ss_pred eeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcC
Q 001391 87 VTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS 165 (1088)
Q Consensus 87 ~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~ 165 (1088)
.+|++ +.|++|+|||+.. .+.+..+.+|.+.|++++|+| .++.+|++|+.|++|++||+.
T Consensus 546 --~~las~~~Dg~v~lWd~~~---------------~~~~~~~~~H~~~V~~l~~~p--~~~~~L~Sgs~Dg~v~iWd~~ 606 (793)
T PLN00181 546 --SQVASSNFEGVVQVWDVAR---------------SQLVTEMKEHEKRVWSIDYSS--ADPTLLASGSDDGSVKLWSIN 606 (793)
T ss_pred --CEEEEEeCCCeEEEEECCC---------------CeEEEEecCCCCCEEEEEEcC--CCCCEEEEEcCCCEEEEEECC
Confidence 34554 4599999999874 356778889999999999996 267899999999999999999
Q ss_pred CCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccc
Q 001391 166 NSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (1088)
Q Consensus 166 ~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 245 (1088)
++..+..+..+. .+.++.+. ++++..+++|+.||.|++||++ .
T Consensus 607 ~~~~~~~~~~~~--~v~~v~~~--~~~g~~latgs~dg~I~iwD~~---------------------------------~ 649 (793)
T PLN00181 607 QGVSIGTIKTKA--NICCVQFP--SESGRSLAFGSADHKVYYYDLR---------------------------------N 649 (793)
T ss_pred CCcEEEEEecCC--CeEEEEEe--CCCCCEEEEEeCCCeEEEEECC---------------------------------C
Confidence 998887776442 34555552 4578999999999999999997 2
Q ss_pred e-eeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEE
Q 001391 246 A-VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFII 322 (1088)
Q Consensus 246 ~-~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~ 322 (1088)
. .++..+.+|...|.++.|. ++.++++++.|++|++||+..... ......+. .+.+|...+.+++|+ +.+|+
T Consensus 650 ~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~--~~~~~~l~--~~~gh~~~i~~v~~s~~~~~la 724 (793)
T PLN00181 650 PKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSIS--GINETPLH--SFMGHTNVKNFVGLSVSDGYIA 724 (793)
T ss_pred CCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCcc--ccCCcceE--EEcCCCCCeeEEEEcCCCCEEE
Confidence 2 2456778999999999997 778999999999999999975321 00013343 778999999999998 68999
Q ss_pred EEeCCCcEEEEcC-CCceeEEE-------------cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 323 TAGEDCTCRVWGS-DGKQLKMI-------------KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 323 sg~~Dg~i~vWd~-~~~~~~~~-------------~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
+|+.|+++++|+. ...++..+ ..|.. .|.+++|+|++..|++|+.||.|++|++
T Consensus 725 sgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 725 TGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQ-FISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCc-EEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 9999999999997 33332211 12333 5999999999999999999999999986
No 53
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.9e-26 Score=222.27 Aligned_cols=281 Identities=17% Similarity=0.273 Sum_probs=224.0
Q ss_pred EEEEeccCCCCCCCCEEEE-E------eCCeEEEEECCCCeeEEEEeeeC-CcceEEEEecccccccCCCccceeeEEEE
Q 001391 22 ALCFVHLPSHLSSLPFLLA-G------SGSQVLLYDLEAGTLIRPFQVFH-GIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1088)
Q Consensus 22 ~v~fs~~pd~~~~~~~laa-g------~d~~I~vwd~~tg~~~~~~~~~~-~~~V~~i~~s~~~~~~~~d~~~~~~~la~ 93 (1088)
++.|| |- -..+++++ + ++|.|.|-|+..++-+..++.++ ...+++++|++. .+. .++++
T Consensus 13 svqfS--Pf--~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~-----~e~----~~~~a 79 (311)
T KOG0277|consen 13 SVQFS--PF--VENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSEN-----HEN----QVIAA 79 (311)
T ss_pred eeEec--cc--ccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCC-----Ccc----eEEEE
Confidence 67898 74 33444444 2 23899999997665555555432 235999999965 443 88999
Q ss_pred ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEe
Q 001391 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1088)
Q Consensus 94 ~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~ 173 (1088)
+|||+++|||+... ..+++.++.|...|.++.+++. +++.+++++-|++|++|+...+.-+.++
T Consensus 80 ~GDGSLrl~d~~~~--------------s~Pi~~~kEH~~EV~Svdwn~~--~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf 143 (311)
T KOG0277|consen 80 SGDGSLRLFDLTMP--------------SKPIHKFKEHKREVYSVDWNTV--RRRIFLTSSWDGTIKLWDPNRPNSVQTF 143 (311)
T ss_pred ecCceEEEeccCCC--------------CcchhHHHhhhhheEEeccccc--cceeEEeeccCCceEeecCCCCcceEee
Confidence 99999999997643 3678999999999999999982 5567888899999999999999999998
Q ss_pred ccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe
Q 001391 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1088)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1088)
.++.. .+|.+.+.+. ..+++++++.|+.+++||++ ..++.+. +.
T Consensus 144 ~gh~~-~Iy~a~~sp~--~~nlfas~Sgd~~l~lwdvr--------------------------------~~gk~~~-i~ 187 (311)
T KOG0277|consen 144 NGHNS-CIYQAAFSPH--IPNLFASASGDGTLRLWDVR--------------------------------SPGKFMS-IE 187 (311)
T ss_pred cCCcc-EEEEEecCCC--CCCeEEEccCCceEEEEEec--------------------------------CCCceeE-EE
Confidence 87654 5778777543 46799999999999999998 1333343 88
Q ss_pred CCCCCEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC---CEEEEEeCCCc
Q 001391 254 GHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGEDCT 329 (1088)
Q Consensus 254 gh~~~V~~v~~sp-~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~---~~l~sg~~Dg~ 329 (1088)
.|...|.++.|+. +...++|++.|+.||.||++.-+. ++ ..+.+|.-.|..+.|++ .+|++++.|-+
T Consensus 188 ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~-------pl--~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT 258 (311)
T KOG0277|consen 188 AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT-------PL--FELNGHGLAVRKVKFSPHHASLLASASYDMT 258 (311)
T ss_pred eccceeEeecccccCCcEEEecCCCceEEEEehhhccc-------cc--eeecCCceEEEEEecCcchhhHhhhccccce
Confidence 9999999999997 456789999999999999998643 34 37899999999999994 68999999999
Q ss_pred EEEEcCC--CceeEEEcccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEc
Q 001391 330 CRVWGSD--GKQLKMIKEHIGRGIWRCLYDS-LSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 330 i~vWd~~--~~~~~~~~~h~~~~V~~l~~~~-dg~~l~tg~~Dg~I~iwd~ 377 (1088)
+|+||.. ...+.+...|.. -|..+.|++ +..++|+++.|..+.||+.
T Consensus 259 ~riw~~~~~ds~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 259 VRIWDPERQDSAIETVDHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EEecccccchhhhhhhhccce-EEeccccccccCceeeecccccceeeecc
Confidence 9999993 344556666766 688888876 4568999999999999985
No 54
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=3.8e-25 Score=222.35 Aligned_cols=282 Identities=14% Similarity=0.245 Sum_probs=228.2
Q ss_pred EEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEE
Q 001391 58 RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVF 136 (1088)
Q Consensus 58 ~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~ 136 (1088)
..+.+|++ .|..+.|+ |+| ..++++| |+.|.+|++..+ .+....+++|.+.|.
T Consensus 41 m~l~gh~g-eI~~~~F~-------P~g----s~~aSgG~Dr~I~LWnv~gd--------------ceN~~~lkgHsgAVM 94 (338)
T KOG0265|consen 41 MLLPGHKG-EIYTIKFH-------PDG----SCFASGGSDRAIVLWNVYGD--------------CENFWVLKGHSGAVM 94 (338)
T ss_pred hhcCCCcc-eEEEEEEC-------CCC----CeEeecCCcceEEEEecccc--------------ccceeeeccccceeE
Confidence 34556666 69999999 887 7888877 999999998743 355677889999999
Q ss_pred EEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccc
Q 001391 137 DVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVA 216 (1088)
Q Consensus 137 ~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~ 216 (1088)
.+.|.+ |+..|+++|.|.+|+.||+++|+.+.+++.+..+ +.++. +....-.+|.+|+.|+++++||++
T Consensus 95 ~l~~~~---d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~-vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R----- 163 (338)
T KOG0265|consen 95 ELHGMR---DGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSF-VNSLD--PSRRGPQLVCSGSDDGTLKLWDIR----- 163 (338)
T ss_pred eeeecc---CCCEEEEecCCceEEEEecccceeeehhccccce-eeecC--ccccCCeEEEecCCCceEEEEeec-----
Confidence 999999 9999999999999999999999999999888764 33333 222344678899999999999999
Q ss_pred cCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCc
Q 001391 217 PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSI 296 (1088)
Q Consensus 217 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~ 296 (1088)
+...++.+. .+-.++++.|..++..+.+|+-|+.|++||++...
T Consensus 164 ----------------------------~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d------- 207 (338)
T KOG0265|consen 164 ----------------------------KKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND------- 207 (338)
T ss_pred ----------------------------ccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCc-------
Confidence 455554443 35679999999999999999999999999998753
Q ss_pred eeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCC-----CceeEEEcccCC---CCeEEEEEcCCCCEEEEE
Q 001391 297 EEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSD-----GKQLKMIKEHIG---RGIWRCLYDSLSSLLVTA 366 (1088)
Q Consensus 297 ~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~-----~~~~~~~~~h~~---~~V~~l~~~~dg~~l~tg 366 (1088)
.. +++.||...|+.+..+ +.++.+-+.|+++++||+. .+++..+.+|.. .....++|+|+++.+..|
T Consensus 208 -~~--~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ag 284 (338)
T KOG0265|consen 208 -GL--YTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAG 284 (338)
T ss_pred -ce--EEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccc
Confidence 23 4899999999999998 7899999999999999982 345777877643 235678899999999999
Q ss_pred eCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEE-EEecCCeEEE
Q 001391 367 GFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLY-IATNHGYLYH 444 (1088)
Q Consensus 367 ~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll-~~t~~g~i~~ 444 (1088)
+.|..+.+||.... +.++.+.+|.+.|.++.|.|...++ .+..+..||.
T Consensus 285 s~dr~vyvwd~~~r-----------------------------~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 285 SADRFVYVWDTTSR-----------------------------RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred cccceEEEeecccc-----------------------------cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 99999999998532 2245567788899999999976554 4556666764
No 55
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.94 E-value=2.6e-26 Score=239.25 Aligned_cols=270 Identities=13% Similarity=0.195 Sum_probs=223.1
Q ss_pred ceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d 146 (1088)
.|..+.|. |+|+ ++++.+..|.+.+|+... +.....+..|.+.|.++.|++ +
T Consensus 98 ~V~~v~Wt-------PeGR---RLltgs~SGEFtLWNg~~---------------fnFEtilQaHDs~Vr~m~ws~---~ 149 (464)
T KOG0284|consen 98 PVNVVRWT-------PEGR---RLLTGSQSGEFTLWNGTS---------------FNFETILQAHDSPVRTMKWSH---N 149 (464)
T ss_pred ceeeEEEc-------CCCc---eeEeecccccEEEecCce---------------eeHHHHhhhhcccceeEEEcc---C
Confidence 58889999 8884 666667789999999753 455566779999999999999 9
Q ss_pred CCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCcc
Q 001391 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (1088)
Q Consensus 147 ~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s 226 (1088)
+.+++||..+|.|++|+..-. .++.+..+....+..++| +|++..+++++.||+|+|||..
T Consensus 150 g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlaf---SpnDskF~t~SdDg~ikiWdf~--------------- 210 (464)
T KOG0284|consen 150 GTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAF---SPNDSKFLTCSDDGTIKIWDFR--------------- 210 (464)
T ss_pred CCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheecc---CCCCceeEEecCCCeEEEEecc---------------
Confidence 999999999999999997533 344444444444555655 6888999999999999999998
Q ss_pred CCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeec
Q 001391 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG 306 (1088)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~ 306 (1088)
..+.-..+.||.-.|.+++|+|....++++|.|..|++||.+++ +++. ++.+
T Consensus 211 ------------------~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg--------~cl~--tlh~ 262 (464)
T KOG0284|consen 211 ------------------MPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG--------SCLA--TLHG 262 (464)
T ss_pred ------------------CCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCc--------chhh--hhhh
Confidence 45555667999999999999999999999999999999999996 4454 8899
Q ss_pred cCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEEcCCC-C
Q 001391 307 HNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL-SSLLVTAGFDSAIKVHQFQAF-L 381 (1088)
Q Consensus 307 h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~d-g~~l~tg~~Dg~I~iwd~~~~-~ 381 (1088)
|...|..+.|. +++|+++++|..++++|+ .-+.+..+++|.. -|++++|+|- ..+|.+||.||.|..|.+... .
T Consensus 263 HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk-dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p 341 (464)
T KOG0284|consen 263 HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK-DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP 341 (464)
T ss_pred ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchh-hheeeccccccccceeeccCCCceEEEecccccc
Confidence 99999999998 689999999999999999 5788899999998 5999999994 468999999999999998521 1
Q ss_pred CCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCe
Q 001391 382 PGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGY 441 (1088)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~ 441 (1088)
+. ..-..|...|.+++|.|=|.+|+.+++..
T Consensus 342 ~~-----------------------------~i~~AHd~~iwsl~~hPlGhil~tgsnd~ 372 (464)
T KOG0284|consen 342 LG-----------------------------EIPPAHDGEIWSLAYHPLGHILATGSNDR 372 (464)
T ss_pred cc-----------------------------CCCcccccceeeeeccccceeEeecCCCc
Confidence 11 11124567899999999999988865544
No 56
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.8e-25 Score=213.19 Aligned_cols=274 Identities=17% Similarity=0.212 Sum_probs=219.9
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
+.++|.++.|. -| |+|.+++. |.+|++||...|.+++++.+|. ..|..++.+ .|.. .+.+++
T Consensus 16 ~qgaV~avryN--~d----GnY~ltcGsdrtvrLWNp~rg~liktYsghG-~EVlD~~~s-------~Dns---kf~s~G 78 (307)
T KOG0316|consen 16 AQGAVRAVRYN--VD----GNYCLTCGSDRTVRLWNPLRGALIKTYSGHG-HEVLDAALS-------SDNS---KFASCG 78 (307)
T ss_pred cccceEEEEEc--cC----CCEEEEcCCCceEEeecccccceeeeecCCC-ceeeecccc-------cccc---ccccCC
Confidence 45899999999 77 88888755 8999999999999999999854 479999988 5652 445556
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC--ceEEE
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS--SIILE 172 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~--~~~~~ 172 (1088)
||+.+.+||+++ .+.++.+.+|...|+.++|+. +...+++|+-|.++++||-++. ++++.
T Consensus 79 gDk~v~vwDV~T---------------Gkv~Rr~rgH~aqVNtV~fNe---esSVv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 79 GDKAVQVWDVNT---------------GKVDRRFRGHLAQVNTVRFNE---ESSVVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred CCceEEEEEccc---------------CeeeeecccccceeeEEEecC---cceEEEeccccceeEEEEcccCCCCccch
Confidence 699999999996 578899999999999999998 8899999999999999998754 44555
Q ss_pred eccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE
Q 001391 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1088)
Q Consensus 173 ~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1088)
+..... .+.++.+ .+..|++|+.||+++.||++ .+......
T Consensus 141 ldea~D-~V~Si~v-----~~heIvaGS~DGtvRtydiR---------------------------------~G~l~sDy 181 (307)
T KOG0316|consen 141 LDEAKD-GVSSIDV-----AEHEIVAGSVDGTVRTYDIR---------------------------------KGTLSSDY 181 (307)
T ss_pred hhhhcC-ceeEEEe-----cccEEEeeccCCcEEEEEee---------------------------------cceeehhh
Confidence 543332 2445543 46789999999999999999 44444333
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcce--EEEEEC--CCEEEEEeCCC
Q 001391 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV--WDCCLT--DSFIITAGEDC 328 (1088)
Q Consensus 253 ~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I--~~v~~~--~~~l~sg~~Dg 328 (1088)
. ..+|+++.|+++++..+.++.|+++|+-|-.+++. ++ ...||...- ..+++. ..++++|++||
T Consensus 182 ~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl--------L~--sYkGhkn~eykldc~l~qsdthV~sgSEDG 249 (307)
T KOG0316|consen 182 F--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKL--------LK--SYKGHKNMEYKLDCCLNQSDTHVFSGSEDG 249 (307)
T ss_pred c--CCcceeEEecCCCCEEEEeeccceeeecccchhHH--------HH--HhcccccceeeeeeeecccceeEEeccCCc
Confidence 3 35899999999999999999999999999998643 43 667776643 445555 68999999999
Q ss_pred cEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 001391 329 TCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 329 ~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd 376 (1088)
.+.+||+ ++..+..+..+..-.|.+++++|.-..++++... .+..|-
T Consensus 250 ~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~-~~~~~~ 297 (307)
T KOG0316|consen 250 KVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH-GDLFWY 297 (307)
T ss_pred eEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC-ceecee
Confidence 9999999 8888888988877338899999987777776543 455554
No 57
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=8.5e-25 Score=226.22 Aligned_cols=282 Identities=19% Similarity=0.265 Sum_probs=218.4
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL- 93 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~- 93 (1088)
|...|.+|... .+.+++|+ ||.++|||. .|+++.++.+|.+ +|..+++--. . +.. ..+++
T Consensus 104 hdDWVSsv~~~--------~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~-~ik~v~~v~~---n-~~~----~~fvsa 165 (423)
T KOG0313|consen 104 HDDWVSSVKGA--------SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTG-PIKSVAWVIK---N-SSS----CLFVSA 165 (423)
T ss_pred chhhhhhhccc--------CceEEEeecCCeeEEEec-CCceEEEEecCCc-ceeeeEEEec---C-Ccc----ceEEEe
Confidence 34446666655 56888887 999999995 5899999999777 7998877521 1 221 34444
Q ss_pred ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC------
Q 001391 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS------ 167 (1088)
Q Consensus 94 ~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~------ 167 (1088)
+-|+++++|.++.+.. ..+.+....||...|-++...+ ++..+++|+.|.+|.||+..+.
T Consensus 166 s~Dqtl~Lw~~~~~~~-----------~~~~~~~~~GHk~~V~sVsv~~---sgtr~~SgS~D~~lkiWs~~~~~~~~~E 231 (423)
T KOG0313|consen 166 SMDQTLRLWKWNVGEN-----------KVKALKVCRGHKRSVDSVSVDS---SGTRFCSGSWDTMLKIWSVETDEEDELE 231 (423)
T ss_pred cCCceEEEEEecCchh-----------hhhHHhHhcccccceeEEEecC---CCCeEEeecccceeeecccCCCcccccc
Confidence 4599999999986541 1344455559999999999999 9999999999999999993221
Q ss_pred -------------------ceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCC
Q 001391 168 -------------------SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAH 228 (1088)
Q Consensus 168 -------------------~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~ 228 (1088)
..+..+.+|..+ +.++.+ ++...+++++.|++|+.||+.
T Consensus 232 ~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~-Vs~V~w----~d~~v~yS~SwDHTIk~WDle----------------- 289 (423)
T KOG0313|consen 232 SSSNRRRKKQKREKEGGTRTPLVTLEGHTEP-VSSVVW----SDATVIYSVSWDHTIKVWDLE----------------- 289 (423)
T ss_pred ccchhhhhhhhhhhcccccCceEEecccccc-eeeEEE----cCCCceEeecccceEEEEEee-----------------
Confidence 112333344332 334444 236789999999999999999
Q ss_pred CCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccC
Q 001391 229 GSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN 308 (1088)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~ 308 (1088)
.+...-++.+ ...++++.++|..++|++|+.|+.+|+||.+++.. ..+. ..+.+|.
T Consensus 290 ----------------tg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g------s~v~-~s~~gH~ 345 (423)
T KOG0313|consen 290 ----------------TGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG------SVVS-QSLIGHK 345 (423)
T ss_pred ----------------cccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCC------ceeE-Eeeecch
Confidence 4555555443 56789999999999999999999999999998743 3444 4899999
Q ss_pred cceEEEEEC---CCEEEEEeCCCcEEEEcC-CCc-eeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 309 ARVWDCCLT---DSFIITAGEDCTCRVWGS-DGK-QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 309 ~~I~~v~~~---~~~l~sg~~Dg~i~vWd~-~~~-~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
..|.++.|+ ..+|++|+.|+++++||+ ..+ ++..+.+|..+ |.++.|+. +.+|++||.|.+|+|+.-
T Consensus 346 nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DK-vl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 346 NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDK-VLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCce-EEEEeccC-CceEEeccCcceEEEecc
Confidence 999999998 478999999999999999 444 89999999884 99999975 458999999999999865
No 58
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.7e-24 Score=209.95 Aligned_cols=252 Identities=19% Similarity=0.233 Sum_probs=209.3
Q ss_pred ceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecC
Q 001391 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (1088)
Q Consensus 123 ~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d 202 (1088)
+..+.+..|.+.|..+.|+- ||++.++++.|.+|++|+...+.++++..++...++ .++. +.|...+++|+.|
T Consensus 8 kr~~~l~~~qgaV~avryN~---dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVl-D~~~---s~Dnskf~s~GgD 80 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNV---DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVL-DAAL---SSDNSKFASCGGD 80 (307)
T ss_pred hhceeecccccceEEEEEcc---CCCEEEEcCCCceEEeecccccceeeeecCCCceee-eccc---cccccccccCCCC
Confidence 45677889999999999999 999999999999999999999999999998876544 3333 4567899999999
Q ss_pred CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEE
Q 001391 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARI 282 (1088)
Q Consensus 203 g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~i 282 (1088)
..+.+||+. +++.++++.+|.+.|+.++|+.+...+++|+.|.++|+
T Consensus 81 k~v~vwDV~---------------------------------TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~ 127 (307)
T KOG0316|consen 81 KAVQVWDVN---------------------------------TGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRL 127 (307)
T ss_pred ceEEEEEcc---------------------------------cCeeeeecccccceeeEEEecCcceEEEeccccceeEE
Confidence 999999999 89999999999999999999999999999999999999
Q ss_pred EEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC
Q 001391 283 WEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS 361 (1088)
Q Consensus 283 Wd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~ 361 (1088)
||-++... ++++ .+..-...|.++...+..|+.|+.||++|.||+ .|+...-.-+| ||+++.|++|++
T Consensus 128 wDCRS~s~------ePiQ--ildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~n 196 (307)
T KOG0316|consen 128 WDCRSRSF------EPIQ--ILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGN 196 (307)
T ss_pred EEcccCCC------Cccc--hhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCC---cceeEEecCCCC
Confidence 99998654 5665 666777889999999999999999999999999 66655544444 799999999999
Q ss_pred EEEEEeCCCCEEEEEc-CCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCC
Q 001391 362 LLVTAGFDSAIKVHQF-QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHG 440 (1088)
Q Consensus 362 ~l~tg~~Dg~I~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g 440 (1088)
.++.++.|+++++.|- .++.++.+.+|... - ..+.|.--..+...+.++.+|
T Consensus 197 c~La~~l~stlrLlDk~tGklL~sYkGhkn~--------e-------------------ykldc~l~qsdthV~sgSEDG 249 (307)
T KOG0316|consen 197 CSLASSLDSTLRLLDKETGKLLKSYKGHKNM--------E-------------------YKLDCCLNQSDTHVFSGSEDG 249 (307)
T ss_pred EEEEeeccceeeecccchhHHHHHhcccccc--------e-------------------eeeeeeecccceeEEeccCCc
Confidence 9999999999999998 45677777777611 0 112222222344677788999
Q ss_pred eEEEEEeccCCc
Q 001391 441 YLYHTKLCDMDS 452 (1088)
Q Consensus 441 ~i~~~~~~~~~~ 452 (1088)
.++.|++.+...
T Consensus 250 ~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 250 KVYFWDLVDETQ 261 (307)
T ss_pred eEEEEEecccee
Confidence 999888776543
No 59
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=5.2e-24 Score=249.20 Aligned_cols=285 Identities=19% Similarity=0.287 Sum_probs=227.3
Q ss_pred EEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEE
Q 001391 59 PFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDV 138 (1088)
Q Consensus 59 ~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v 138 (1088)
.+..++...|.++.|+ ++|+ .+++++.++.+++|+..... ..+.+.+.+|...|.++
T Consensus 153 ~~~~~~~~sv~~~~fs-------~~g~---~l~~~~~~~~i~~~~~~~~~-------------~~~~~~l~~h~~~v~~~ 209 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFS-------PDGR---ALAAASSDGLIRIWKLEGIK-------------SNLLRELSGHTRGVSDV 209 (456)
T ss_pred eecccccCceEEEEEc-------CCCC---eEEEccCCCcEEEeeccccc-------------chhhccccccccceeee
Confidence 3444445679999999 8883 44444569999999995321 13566678999999999
Q ss_pred EEecccCCCCEEEEEEcCCcEEEEEc-CCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCcccc
Q 001391 139 CFLKVCNGNRSLAIGCSDNSIRVWDI-SNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217 (1088)
Q Consensus 139 ~f~p~~~d~~~lasgs~Dg~V~iWd~-~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~ 217 (1088)
+|+| +++++++++.|++|++||+ ..+..+.++.+|... +++++| ++++.++++|+.|++|+|||++
T Consensus 210 ~fs~---d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~-v~~~~f---~p~g~~i~Sgs~D~tvriWd~~------ 276 (456)
T KOG0266|consen 210 AFSP---DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTY-VTSVAF---SPDGNLLVSGSDDGTVRIWDVR------ 276 (456)
T ss_pred EECC---CCcEEEEecCCceEEEeeccCCCeEEEEecCCCCc-eEEEEe---cCCCCEEEEecCCCcEEEEecc------
Confidence 9999 9999999999999999999 555888888877654 578887 6788999999999999999999
Q ss_pred CCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCce
Q 001391 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIE 297 (1088)
Q Consensus 218 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~ 297 (1088)
.++++..+.+|.+.|.+++|++++.+|++++.|+.|++||+.++.. .
T Consensus 277 ---------------------------~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~------~ 323 (456)
T KOG0266|consen 277 ---------------------------TGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSK------L 323 (456)
T ss_pred ---------------------------CCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCce------e
Confidence 7889999999999999999999999999999999999999999752 1
Q ss_pred eeeceeeeccCc--ceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCC--CeEEEEEcCCCCEEEEEeCCC
Q 001391 298 EVGSSVLYGHNA--RVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR--GIWRCLYDSLSSLLVTAGFDS 370 (1088)
Q Consensus 298 ~i~~~~~~~h~~--~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~--~V~~l~~~~dg~~l~tg~~Dg 370 (1088)
+.. .+.++.. .+++++|+ +.++++++.|+++++||+ .++.+..+.+|... .+.+...++.+.++++|+.|+
T Consensus 324 ~~~--~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~ 401 (456)
T KOG0266|consen 324 CLK--LLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDG 401 (456)
T ss_pred eee--cccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCc
Confidence 222 4555544 49999998 689999999999999999 68889999998874 344555678999999999999
Q ss_pred CEEEEEcCC-CCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEec---CCeEE
Q 001391 371 AIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN---HGYLY 443 (1088)
Q Consensus 371 ~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~---~g~i~ 443 (1088)
.|.+|++.. ..++.+++|. ...+..+.+++...+++... ++.+.
T Consensus 402 ~v~~~~~~s~~~~~~l~~h~-----------------------------~~~~~~~~~~~~~~~~~s~s~~~d~~~~ 449 (456)
T KOG0266|consen 402 SVYVWDSSSGGILQRLEGHS-----------------------------KAAVSDLSSHPTENLIASSSFEGDGLIR 449 (456)
T ss_pred eEEEEeCCccchhhhhcCCC-----------------------------CCceeccccCCCcCeeeecCcCCCceEE
Confidence 999999963 3344444331 24567777777766666543 44454
No 60
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.1e-24 Score=226.76 Aligned_cols=279 Identities=16% Similarity=0.258 Sum_probs=222.5
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC---eeEEEEeeeCCcceEEEEecccccccCCCccceeeEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG---TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg---~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~l 91 (1088)
|...|.-+.|| ++ |+|||+++ |.+..||++... ++.+++.+|.. +|.-|.|| ||.+ .++
T Consensus 223 htdEVWfl~FS--~n----GkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~-~V~yi~wS-------PDdr---yLl 285 (519)
T KOG0293|consen 223 HTDEVWFLQFS--HN----GKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQ-PVSYIMWS-------PDDR---YLL 285 (519)
T ss_pred CCCcEEEEEEc--CC----CeeEeeccCCceEEEEEEecCcceeeeeeeecccC-ceEEEEEC-------CCCC---eEE
Confidence 67889999999 99 99999999 799999997543 45677787666 89999999 7762 555
Q ss_pred EEECCCEEEEEEeccCCCCCCCCCCccccccceeeec-cCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceE
Q 001391 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL-PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII 170 (1088)
Q Consensus 92 a~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~ 170 (1088)
+|+-+..+++||+.++. +...+ .+|...+.+++|.| ||..+++|+.|+++..||+... .+
T Consensus 286 aCg~~e~~~lwDv~tgd---------------~~~~y~~~~~~S~~sc~W~p---Dg~~~V~Gs~dr~i~~wdlDgn-~~ 346 (519)
T KOG0293|consen 286 ACGFDEVLSLWDVDTGD---------------LRHLYPSGLGFSVSSCAWCP---DGFRFVTGSPDRTIIMWDLDGN-IL 346 (519)
T ss_pred ecCchHheeeccCCcch---------------hhhhcccCcCCCcceeEEcc---CCceeEecCCCCcEEEecCCcc-hh
Confidence 55558889999998753 22222 24568899999999 9999999999999999999643 33
Q ss_pred EEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeE
Q 001391 171 LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (1088)
Q Consensus 171 ~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1088)
...++-....++.+++ .+||..+++.+.|..|++++.+ ....+.
T Consensus 347 ~~W~gvr~~~v~dlai---t~Dgk~vl~v~~d~~i~l~~~e---------------------------------~~~dr~ 390 (519)
T KOG0293|consen 347 GNWEGVRDPKVHDLAI---TYDGKYVLLVTVDKKIRLYNRE---------------------------------ARVDRG 390 (519)
T ss_pred hcccccccceeEEEEE---cCCCcEEEEEecccceeeechh---------------------------------hhhhhc
Confidence 3333333345677776 6789999999999999999987 222221
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcc--eEEEEEC---CCEEEEEe
Q 001391 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR--VWDCCLT---DSFIITAG 325 (1088)
Q Consensus 251 ~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~--I~~v~~~---~~~l~sg~ 325 (1088)
+..-..+|++...|.+++++++--.+..+++||+.... .+. ...||... |-.-||. ..++++|+
T Consensus 391 -lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~--------lv~--kY~Ghkq~~fiIrSCFgg~~~~fiaSGS 459 (519)
T KOG0293|consen 391 -LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENK--------LVR--KYFGHKQGHFIIRSCFGGGNDKFIASGS 459 (519)
T ss_pred -cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhh--------HHH--HhhcccccceEEEeccCCCCcceEEecC
Confidence 22345789999999999999999999999999999743 332 67787654 4445565 37999999
Q ss_pred CCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEEEcC
Q 001391 326 EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 326 ~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg-~~l~tg~~Dg~I~iwd~~ 378 (1088)
+|+.|+||+. +|+++..+.+|.. .|.+++|+|.. ..+|++|.||+||||.+.
T Consensus 460 ED~kvyIWhr~sgkll~~LsGHs~-~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 460 EDSKVYIWHRISGKLLAVLSGHSK-TVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCceEEEEEccCCceeEeecCCcc-eeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 9999999999 9999999999998 79999999965 479999999999999874
No 61
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.93 E-value=4e-24 Score=248.47 Aligned_cols=273 Identities=23% Similarity=0.367 Sum_probs=234.3
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEE-EeeeCCcceEEEEecccccccCCCccceeeEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRP-FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~-~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~ 93 (1088)
+...+.+..|. ..++.+|. +++|++||..++..+.. +.+|.+ .|.++++. ..+ +.++..
T Consensus 207 ~~~~~~~~q~~--------~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g-~V~~l~~~-------~~~---~~lvsg 267 (537)
T KOG0274|consen 207 DDHVVLCLQLH--------DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFG-GVWGLAFP-------SGG---DKLVSG 267 (537)
T ss_pred Ccchhhhheee--------cCeEEecCCCceeEEeecccceEEEeeccCCCC-CceeEEEe-------cCC---CEEEEE
Confidence 34557788887 45788888 69999999999999888 999887 79999996 322 155555
Q ss_pred ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEe
Q 001391 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1088)
Q Consensus 94 ~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~ 173 (1088)
+.|+++++||..+ .++.+.+.+|.+.|.++...+ .++++|+.|.+|++|++.++..+..+
T Consensus 268 S~D~t~rvWd~~s---------------g~C~~~l~gh~stv~~~~~~~-----~~~~sgs~D~tVkVW~v~n~~~l~l~ 327 (537)
T KOG0274|consen 268 STDKTERVWDCST---------------GECTHSLQGHTSSVRCLTIDP-----FLLVSGSRDNTVKVWDVTNGACLNLL 327 (537)
T ss_pred ecCCcEEeEecCC---------------CcEEEEecCCCceEEEEEccC-----ceEeeccCCceEEEEeccCcceEEEe
Confidence 6699999999775 578999999999999999854 77889999999999999999999998
Q ss_pred ccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe
Q 001391 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1088)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1088)
.+| ...+.++.+ ++.++++|+.|++|++||+. ++++++.+.
T Consensus 328 ~~h-~~~V~~v~~-----~~~~lvsgs~d~~v~VW~~~---------------------------------~~~cl~sl~ 368 (537)
T KOG0274|consen 328 RGH-TGPVNCVQL-----DEPLLVSGSYDGTVKVWDPR---------------------------------TGKCLKSLS 368 (537)
T ss_pred ccc-cccEEEEEe-----cCCEEEEEecCceEEEEEhh---------------------------------hceeeeeec
Confidence 874 445667765 47899999999999999999 899999999
Q ss_pred CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEE
Q 001391 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVW 333 (1088)
Q Consensus 254 gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vW 333 (1088)
||.+.|.++.+.+. ..+++|+.|++|++||+.+.. +++. ++.+|..-+..+.+.+++|++++.|++|++|
T Consensus 369 gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~-------~c~~--tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~W 438 (537)
T KOG0274|consen 369 GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR-------KCIH--TLQGHTSLVSSLLLRDNFLVSSSADGTIKLW 438 (537)
T ss_pred CCcceEEEEEecCc-ceEEeeeeccceEeecCCchh-------hhhh--hhcCCcccccccccccceeEeccccccEEEe
Confidence 99999999988766 899999999999999999951 3443 8999999999999999999999999999999
Q ss_pred cC-CCceeEEEcc-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 334 GS-DGKQLKMIKE-HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 334 d~-~~~~~~~~~~-h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
|. ++++++++.+ |.+ +|+.+++. ...+++++.||++++||++.
T Consensus 439 D~~~~~~~~~~~~~~~~-~v~~l~~~--~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 439 DAEEGECLRTLEGRHVG-GVSALALG--KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred ecccCceeeeeccCCcc-cEEEeecC--cceEEEEecCCeeEEEeccc
Confidence 99 8999999988 556 69888876 45789999999999999954
No 62
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.93 E-value=4.7e-23 Score=259.69 Aligned_cols=320 Identities=14% Similarity=0.199 Sum_probs=232.1
Q ss_pred CCeEEEEECCCCeeEEEEee----eCCcceEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCc
Q 001391 43 GSQVLLYDLEAGTLIRPFQV----FHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPE 117 (1088)
Q Consensus 43 d~~I~vwd~~tg~~~~~~~~----~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~ 117 (1088)
+|.+++|+..+.+....+.. .+...|.+++|+ |++ .+++++ .|+.|+||++.........
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs-------~dg----~~latgg~D~~I~iwd~~~~~~~~~~---- 521 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFD-------RDG----EFFATAGVNKKIKIFECESIIKDGRD---- 521 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEEC-------CCC----CEEEEEeCCCEEEEEECCcccccccc----
Confidence 46788888877655444332 134579999999 777 455554 4999999998632100000
Q ss_pred cccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEE
Q 001391 118 TCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (1088)
Q Consensus 118 ~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~ 197 (1088)
.......+. +...|.+++|+| .++.+|++++.|++|++||+.+++.+..+..|.. .++++.+. ..++.+|+
T Consensus 522 ---~~~~~~~~~-~~~~v~~l~~~~--~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~-~V~~l~~~--p~~~~~L~ 592 (793)
T PLN00181 522 ---IHYPVVELA-SRSKLSGICWNS--YIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEK-RVWSIDYS--SADPTLLA 592 (793)
T ss_pred ---cccceEEec-ccCceeeEEecc--CCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCC-CEEEEEEc--CCCCCEEE
Confidence 011122233 346799999987 2467999999999999999999988888876654 47777773 23678999
Q ss_pred EEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEc-CCCCEEEEEEC
Q 001391 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS-SCGSKLVSVSD 276 (1088)
Q Consensus 198 sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~s-p~g~~l~s~s~ 276 (1088)
+|+.||.|++||+. .+..+..+..| ..|.++.|+ +++.++++|+.
T Consensus 593 Sgs~Dg~v~iWd~~---------------------------------~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~ 638 (793)
T PLN00181 593 SGSDDGSVKLWSIN---------------------------------QGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA 638 (793)
T ss_pred EEcCCCEEEEEECC---------------------------------CCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC
Confidence 99999999999998 55556666654 679999995 57899999999
Q ss_pred CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcCC-------CceeEEEcccCC
Q 001391 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGSD-------GKQLKMIKEHIG 348 (1088)
Q Consensus 277 Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~~-------~~~~~~~~~h~~ 348 (1088)
|+.|++||+...+. .+. .+.+|...|.++.|. +.+|++++.|++|++||+. .+++..+.+|..
T Consensus 639 dg~I~iwD~~~~~~-------~~~--~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~ 709 (793)
T PLN00181 639 DHKVYYYDLRNPKL-------PLC--TMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN 709 (793)
T ss_pred CCeEEEEECCCCCc-------cce--EecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC
Confidence 99999999987421 222 677999999999997 7899999999999999983 256788999988
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCcc-ceeeccCCCCceEEEEe
Q 001391 349 RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSE-QIRLTDSKSEYVRCLHL 427 (1088)
Q Consensus 349 ~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~V~~l~~ 427 (1088)
.+..++|++++.+|++|+.|+.|++|+...... ++......... .-.....+...|++++|
T Consensus 710 -~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~-----------------~~s~~~~~~~~~~~~~~~~~~~~V~~v~w 771 (793)
T PLN00181 710 -VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMP-----------------VLSYKFKTIDPVSGLEVDDASQFISSVCW 771 (793)
T ss_pred -CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCc-----------------eEEEecccCCcccccccCCCCcEEEEEEE
Confidence 699999999999999999999999999743210 00000000000 00012334567999999
Q ss_pred ccCCeE-EEEecCCeEEEEEe
Q 001391 428 TSEDTL-YIATNHGYLYHTKL 447 (1088)
Q Consensus 428 s~~~~l-l~~t~~g~i~~~~~ 447 (1088)
++++.. ++++.+|.|..|++
T Consensus 772 s~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 772 RGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cCCCCeEEEecCCCcEEEEec
Confidence 998854 55567788875543
No 63
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.3e-24 Score=223.33 Aligned_cols=294 Identities=16% Similarity=0.207 Sum_probs=219.3
Q ss_pred eeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEE
Q 001391 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA 324 (1088)
Q Consensus 247 ~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg 324 (1088)
+..+.+..|.+.|.-+.||++|++|||++.|.+..+|++..... .+... ++.+|..+|..+.|+ +.+++++
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-----~kl~~--tlvgh~~~V~yi~wSPDdryLlaC 287 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-----FKLKK--TLVGHSQPVSYIMWSPDDRYLLAC 287 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-----eeeee--eeecccCceEEEEECCCCCeEEec
Confidence 33455778999999999999999999999999999999876533 23343 899999999999999 5799999
Q ss_pred eCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEe
Q 001391 325 GEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSI 403 (1088)
Q Consensus 325 ~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1088)
+.|-.+++||. +|.....+....+..+.+++|.|||..+++|+.|+++..||+++..+...++..
T Consensus 288 g~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr-------------- 353 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVR-------------- 353 (519)
T ss_pred CchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccc--------------
Confidence 99999999999 777776664333447999999999999999999999999999876443333211
Q ss_pred eeCCCccceeeccCCCCceEEEEeccCCeE-EEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCC
Q 001391 404 KIPNFSEQIRLTDSKSEYVRCLHLTSEDTL-YIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCG 482 (1088)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~V~~l~~s~~~~l-l~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~ 482 (1088)
...|.+++.++||+. ++.+.+..+..++...... ..+ ..+..+|.+..++.
T Consensus 354 ---------------~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d---r~l--ise~~~its~~iS~-------- 405 (519)
T KOG0293|consen 354 ---------------DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD---RGL--ISEEQPITSFSISK-------- 405 (519)
T ss_pred ---------------cceeEEEEEcCCCcEEEEEecccceeeechhhhhh---hcc--ccccCceeEEEEcC--------
Confidence 135889999999954 4556677776544333222 112 23355788887744
Q ss_pred CCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecC-CCeEEEEECCCCeEEEEecCCCCCcccc
Q 001391 483 IDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSL-GHRFIFTADPKGRLKLWQLCDPFSSVCY 561 (1088)
Q Consensus 483 ~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~L~s~~~dg~i~vwd~~~~~~~~~~ 561 (1088)
++.++++.-.+..+.+||+....+..+ +..+ +.+ ...+-.||.- +.+++++|+.|+.|++|+...++
T Consensus 406 d~k~~LvnL~~qei~LWDl~e~~lv~k----Y~Gh--kq~-~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk----- 473 (519)
T KOG0293|consen 406 DGKLALVNLQDQEIHLWDLEENKLVRK----YFGH--KQG-HFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK----- 473 (519)
T ss_pred CCcEEEEEcccCeeEEeecchhhHHHH----hhcc--ccc-ceEEEeccCCCCcceEEecCCCceEEEEEccCCc-----
Confidence 458888888999999999985443322 1111 111 1122246654 55899999999999999988653
Q ss_pred cCCcccceeeeeeeccccCceEEEEEeeeC-CCEEEEEcCCCcEEEEeCCc
Q 001391 562 ESSKTNNVFLVAEFSSCFGARIMCLDASFE-DEVLFCGDLRGNLVLFPLLR 611 (1088)
Q Consensus 562 ~~~~~~~~~l~~~~~~~h~~~It~l~~spd-g~~LatGs~dg~I~Iw~~~~ 611 (1088)
+.+. ..+|...|+|++|+|. -.++|+|+.||+|+||....
T Consensus 474 ---------ll~~-LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 474 ---------LLAV-LSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ---------eeEe-ecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 2333 4589999999999995 45899999999999998764
No 64
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.93 E-value=6.1e-23 Score=226.15 Aligned_cols=282 Identities=20% Similarity=0.345 Sum_probs=224.6
Q ss_pred eeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeE
Q 001391 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEI 205 (1088)
Q Consensus 126 ~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I 205 (1088)
+.+.+|.+.|.+++|+| ++++|++++.||.|++|++.+++....+..+... +..+.+ .+++..+++++.+|.|
T Consensus 3 ~~~~~h~~~i~~~~~~~---~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~-i~~~~~---~~~~~~l~~~~~~~~i 75 (289)
T cd00200 3 RTLKGHTGGVTCVAFSP---DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGP-VRDVAA---SADGTYLASGSSDKTI 75 (289)
T ss_pred hHhcccCCCEEEEEEcC---CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcc-eeEEEE---CCCCCEEEEEcCCCeE
Confidence 45679999999999999 9999999999999999999988777666655443 334444 4667899999999999
Q ss_pred EEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 001391 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEV 285 (1088)
Q Consensus 206 ~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~ 285 (1088)
++|++. ..+.+..+..|...|.++.|+|+++++++++.|+.+++||+
T Consensus 76 ~i~~~~---------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 122 (289)
T cd00200 76 RLWDLE---------------------------------TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122 (289)
T ss_pred EEEEcC---------------------------------cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEEC
Confidence 999998 55667778899999999999999989999988999999999
Q ss_pred CCCcccCCCCceeeeceeeeccCcceEEEEECC--CEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCE
Q 001391 286 RAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSL 362 (1088)
Q Consensus 286 ~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~--~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~ 362 (1088)
.+. +... .+..|...|.+++|++ .++++++.|+.+++||+ .++.+..+..|.. .|.+++|+|+++.
T Consensus 123 ~~~--------~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~ 191 (289)
T cd00200 123 ETG--------KCLT--TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEK 191 (289)
T ss_pred CCc--------EEEE--EeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCcc-ccceEEECCCcCE
Confidence 864 2332 5567888999999984 67777777999999999 5788888888887 6999999999999
Q ss_pred EEEEeCCCCEEEEEcCC-CCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEec-CC
Q 001391 363 LVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN-HG 440 (1088)
Q Consensus 363 l~tg~~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~-~g 440 (1088)
+++++.|+.|++||+.. ..+. .+..+...+.+++|++++.++++.. +|
T Consensus 192 l~~~~~~~~i~i~d~~~~~~~~------------------------------~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 241 (289)
T cd00200 192 LLSSSSDGTIKLWDLSTGKCLG------------------------------TLRGHENGVNSVAFSPDGYLLASGSEDG 241 (289)
T ss_pred EEEecCCCcEEEEECCCCceec------------------------------chhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence 99999999999999953 1111 1123345789999999888888777 89
Q ss_pred eEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEE
Q 001391 441 YLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (1088)
Q Consensus 441 ~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~ 500 (1088)
.+..+++..... ..... .+...+.++++.+. +..+++++.||.+++|+
T Consensus 242 ~i~i~~~~~~~~---~~~~~-~~~~~i~~~~~~~~--------~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 242 TIRVWDLRTGEC---VQTLS-GHTNSVTSLAWSPD--------GKRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCCcee---EEEcc-ccCCcEEEEEECCC--------CCEEEEecCCCeEEecC
Confidence 898766543221 22223 23457888887554 47999999999999995
No 65
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.92 E-value=2.8e-23 Score=215.04 Aligned_cols=295 Identities=17% Similarity=0.211 Sum_probs=222.4
Q ss_pred CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEE
Q 001391 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWK 209 (1088)
Q Consensus 130 ~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd 209 (1088)
.|.+||.++...+ +.|+||+.||.+++||. .|+...++.++... +.++.++..++....+++++.|.++++|.
T Consensus 103 ~hdDWVSsv~~~~-----~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~-ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~ 175 (423)
T KOG0313|consen 103 LHDDWVSSVKGAS-----KWILTGSYDGTSRIWDL-KGKSIKTIVGHTGP-IKSVAWVIKNSSSCLFVSASMDQTLRLWK 175 (423)
T ss_pred cchhhhhhhcccC-----ceEEEeecCCeeEEEec-CCceEEEEecCCcc-eeeeEEEecCCccceEEEecCCceEEEEE
Confidence 5899999998854 79999999999999997 56777777777654 34455544445556899999999999999
Q ss_pred eccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 001391 210 VDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (1088)
Q Consensus 210 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~ 289 (1088)
++.++. ....+....||+..|-+|+..++|..++++|.|.+++||+.....
T Consensus 176 ~~~~~~-----------------------------~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~ 226 (423)
T KOG0313|consen 176 WNVGEN-----------------------------KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDE 226 (423)
T ss_pred ecCchh-----------------------------hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCc
Confidence 982221 223344455999999999999999999999999999999943321
Q ss_pred cc-----------------CCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCC
Q 001391 290 WK-----------------DSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRG 350 (1088)
Q Consensus 290 ~~-----------------~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~ 350 (1088)
.. ......++ ..+.||..+|.++.|. ...+++++.|.+|++||+ .+..+..+.+.. +
T Consensus 227 ~~~~E~~s~~rrk~~~~~~~~~~r~P~--vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~k--s 302 (423)
T KOG0313|consen 227 EDELESSSNRRRKKQKREKEGGTRTPL--VTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNK--S 302 (423)
T ss_pred cccccccchhhhhhhhhhhcccccCce--EEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCc--c
Confidence 11 00001122 4788999999999999 688999999999999999 788777776654 6
Q ss_pred eEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccC
Q 001391 351 IWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSE 430 (1088)
Q Consensus 351 V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 430 (1088)
+.++.++|..++|++|+.|..|++||.+.. ...-....+-+|..+|.++.++|.
T Consensus 303 l~~i~~~~~~~Ll~~gssdr~irl~DPR~~--------------------------~gs~v~~s~~gH~nwVssvkwsp~ 356 (423)
T KOG0313|consen 303 LNCISYSPLSKLLASGSSDRHIRLWDPRTG--------------------------DGSVVSQSLIGHKNWVSSVKWSPT 356 (423)
T ss_pred eeEeecccccceeeecCCCCceeecCCCCC--------------------------CCceeEEeeecchhhhhheecCCC
Confidence 999999999999999999999999999642 111123345578889999999996
Q ss_pred C--eEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEc
Q 001391 431 D--TLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVV 502 (1088)
Q Consensus 431 ~--~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~ 502 (1088)
+ .++.++.++.+..|++.......+ .+.+| ...+.++++.. +..|++|+.|.+|+|+.-.
T Consensus 357 ~~~~~~S~S~D~t~klWDvRS~k~ply--dI~~h-~DKvl~vdW~~---------~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 357 NEFQLVSGSYDNTVKLWDVRSTKAPLY--DIAGH-NDKVLSVDWNE---------GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CceEEEEEecCCeEEEEEeccCCCcce--eeccC-CceEEEEeccC---------CceEEeccCcceEEEeccc
Confidence 6 566667888888666655442211 22333 56677776633 4699999999999998643
No 66
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.92 E-value=1.3e-24 Score=231.69 Aligned_cols=286 Identities=15% Similarity=0.171 Sum_probs=227.0
Q ss_pred eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCC
Q 001391 55 TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH 133 (1088)
Q Consensus 55 ~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 133 (1088)
+.++++.+|.. .|.++.|.|. .+ .+|+++| |+.|+||++... ..+++++.+|..
T Consensus 205 k~~~~~~gH~k-gvsai~~fp~------~~----hLlLS~gmD~~vklW~vy~~--------------~~~lrtf~gH~k 259 (503)
T KOG0282|consen 205 KLSHNLSGHTK-GVSAIQWFPK------KG----HLLLSGGMDGLVKLWNVYDD--------------RRCLRTFKGHRK 259 (503)
T ss_pred hheeeccCCcc-ccchhhhccc------ee----eEEEecCCCceEEEEEEecC--------------cceehhhhcchh
Confidence 45778888776 6999999942 44 5666666 999999999863 479999999999
Q ss_pred cEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccC
Q 001391 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (1088)
Q Consensus 134 ~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~ 213 (1088)
.|.+++|++ +|..+.|++-|+.|++||+++|+++..++. ++..+++.+++.+ .+.+++|+.|+.|+.||++
T Consensus 260 ~Vrd~~~s~---~g~~fLS~sfD~~lKlwDtETG~~~~~f~~--~~~~~cvkf~pd~--~n~fl~G~sd~ki~~wDiR-- 330 (503)
T KOG0282|consen 260 PVRDASFNN---CGTSFLSASFDRFLKLWDTETGQVLSRFHL--DKVPTCVKFHPDN--QNIFLVGGSDKKIRQWDIR-- 330 (503)
T ss_pred hhhhhhccc---cCCeeeeeecceeeeeeccccceEEEEEec--CCCceeeecCCCC--CcEEEEecCCCcEEEEecc--
Confidence 999999999 999999999999999999999999998854 4456777775432 4889999999999999999
Q ss_pred ccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCC
Q 001391 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS 293 (1088)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~ 293 (1088)
.++.++....|-+.|..+.|-++|++++++++|++++||+....-
T Consensus 331 -------------------------------s~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v---- 375 (503)
T KOG0282|consen 331 -------------------------------SGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPV---- 375 (503)
T ss_pred -------------------------------chHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCc----
Confidence 677788888899999999999999999999999999999998853
Q ss_pred CCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCC----CceeEEEcccCCC-CeEEEEEcCCCCEEEEE
Q 001391 294 DSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSD----GKQLKMIKEHIGR-GIWRCLYDSLSSLLVTA 366 (1088)
Q Consensus 294 ~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~----~~~~~~~~~h~~~-~V~~l~~~~dg~~l~tg 366 (1088)
.++ .....+.-...++..+ +..++.-+.|..|.++.+. ....+.+++|... --..+.|+|||.+|++|
T Consensus 376 ----~ik-~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SG 450 (503)
T KOG0282|consen 376 ----PIK-NIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSG 450 (503)
T ss_pred ----cch-hhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEee
Confidence 222 1223333334455555 6899999999999999972 2334567777642 23468899999999999
Q ss_pred eCCCCEEEEEcCC-CCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCC--eEEEEecCCeEE
Q 001391 367 GFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED--TLYIATNHGYLY 443 (1088)
Q Consensus 367 ~~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~--~ll~~t~~g~i~ 443 (1088)
..||.+.+||.++ ++ +..+..|++.+..+.|.|.. +++.++-+|.|.
T Consensus 451 dsdG~v~~wdwkt~kl------------------------------~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ik 500 (503)
T KOG0282|consen 451 DSDGKVNFWDWKTTKL------------------------------VSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIK 500 (503)
T ss_pred cCCccEEEeechhhhh------------------------------hhccccCCcceEEEEecCCCcceeEecccCceeE
Confidence 9999999999954 22 22344556778899999854 666667778776
Q ss_pred E
Q 001391 444 H 444 (1088)
Q Consensus 444 ~ 444 (1088)
.
T Consensus 501 i 501 (503)
T KOG0282|consen 501 I 501 (503)
T ss_pred e
Confidence 3
No 67
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.3e-23 Score=203.56 Aligned_cols=283 Identities=20% Similarity=0.298 Sum_probs=210.1
Q ss_pred EeeeCCcceEEEEecccccccCCCccceeeEEEE------ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCC
Q 001391 60 FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL------FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH 133 (1088)
Q Consensus 60 ~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~------~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 133 (1088)
.+++++ .+++|||. -+++ ..+|+ .|.|++.|.++..+. ......++. -.+
T Consensus 6 tpgf~G---ysvqfSPf-----~~nr---LavAt~q~yGl~G~G~L~ile~~~~~------------gi~e~~s~d-~~D 61 (311)
T KOG0277|consen 6 TPGFHG---YSVQFSPF-----VENR---LAVATAQHYGLAGNGRLFILEVTDPK------------GIQECQSYD-TED 61 (311)
T ss_pred cCCccc---ceeEeccc-----ccch---hheeehhhcccccCceEEEEecCCCC------------CeEEEEeee-ccc
Confidence 344555 67899976 2321 22333 346889999986222 133444443 457
Q ss_pred cEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC-ceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEecc
Q 001391 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS-SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (1088)
Q Consensus 134 ~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~-~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~ 212 (1088)
...+++|++. ....+++++.||++++||+... ..+..++.|.+ .++++.+ ...+...+++++.|++|++|+..
T Consensus 62 ~LfdV~Wse~--~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~-EV~Svdw--n~~~r~~~ltsSWD~TiKLW~~~- 135 (311)
T KOG0277|consen 62 GLFDVAWSEN--HENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKR-EVYSVDW--NTVRRRIFLTSSWDGTIKLWDPN- 135 (311)
T ss_pred ceeEeeecCC--CcceEEEEecCceEEEeccCCCCcchhHHHhhhh-heEEecc--ccccceeEEeeccCCceEeecCC-
Confidence 8999999982 4457888999999999996533 44666666655 4777765 23456778888999999999998
Q ss_pred CccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCccc
Q 001391 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWK 291 (1088)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp-~g~~l~s~s~Dg~v~iWd~~~~~~~ 291 (1088)
....+.++.||...|...+|+| ....++++|.|+++++||++....
T Consensus 136 --------------------------------r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk- 182 (311)
T KOG0277|consen 136 --------------------------------RPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK- 182 (311)
T ss_pred --------------------------------CCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc-
Confidence 6778889999999999999999 467899999999999999987522
Q ss_pred CCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcC--CCceeEEEcccCCCCeEEEEEcCCC-CEEEE
Q 001391 292 DSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLS-SLLVT 365 (1088)
Q Consensus 292 ~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~--~~~~~~~~~~h~~~~V~~l~~~~dg-~~l~t 365 (1088)
. ..+..|...|.++.|+ +..++||+.|+.||+||+ -..++..+.+|.- .|..+.|+|.. .+|++
T Consensus 183 ------~---~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~-AVRkvk~Sph~~~lLaS 252 (311)
T KOG0277|consen 183 ------F---MSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGL-AVRKVKFSPHHASLLAS 252 (311)
T ss_pred ------e---eEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCce-EEEEEecCcchhhHhhh
Confidence 2 2577899999999998 689999999999999999 3567888999988 79999999965 58999
Q ss_pred EeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccC-CeEEEE-ecCCeEE
Q 001391 366 AGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSE-DTLYIA-TNHGYLY 443 (1088)
Q Consensus 366 g~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-~~ll~~-t~~g~i~ 443 (1088)
++.|-+++|||...+. ..++..+.|.+.+..+.|++- ...++. +-++.++
T Consensus 253 asYDmT~riw~~~~~d----------------------------s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~ 304 (311)
T KOG0277|consen 253 ASYDMTVRIWDPERQD----------------------------SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLY 304 (311)
T ss_pred ccccceEEecccccch----------------------------hhhhhhhccceEEeccccccccCceeeeccccccee
Confidence 9999999999985310 112223456677888888873 344444 4455565
No 68
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=3.5e-23 Score=236.14 Aligned_cols=316 Identities=17% Similarity=0.245 Sum_probs=204.9
Q ss_pred eeeecc-CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecC
Q 001391 124 LVQSLP-RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (1088)
Q Consensus 124 ~~~~l~-~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d 202 (1088)
..+.+. .|.+.|+++.|++ ||+|||+||.|+.|+||.+...+....-.....++...++ .++..-.+....
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~---DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~-----~~s~~~p~~s~~ 329 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSH---DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYN-----ANSQIEPSTSSE 329 (712)
T ss_pred EeeccccccCCcEEEEEeCC---CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhh-----hccccCcccccc
Confidence 445566 8999999999999 9999999999999999999765442111111111111110 000000000000
Q ss_pred CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEE
Q 001391 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARI 282 (1088)
Q Consensus 203 g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~i 282 (1088)
+.+. + .......+.......+......-..++++.+.||.+.|..|.|+.+ .+|+|+|.|++|||
T Consensus 330 ~~~~----------~----~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRL 394 (712)
T KOG0283|consen 330 EKIS----------S----RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRL 394 (712)
T ss_pred cccc----------c----cccccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEe
Confidence 0000 0 0000000000000011111111256788999999999999999976 68999999999999
Q ss_pred EEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCC
Q 001391 283 WEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSL 359 (1088)
Q Consensus 283 Wd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~d 359 (1088)
|++....+ + ..+.|...|+|++|+ +++|++|+-||.||||++..+.+.....-.. -|++++|.||
T Consensus 395 Wh~~~~~C--------L---~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~-lITAvcy~Pd 462 (712)
T KOG0283|consen 395 WHPGRKEC--------L---KVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRD-LITAVCYSPD 462 (712)
T ss_pred ecCCCcce--------e---eEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhh-hheeEEeccC
Confidence 99998644 3 678899999999998 5899999999999999996665555544444 6999999999
Q ss_pred CCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecC
Q 001391 360 SSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNH 439 (1088)
Q Consensus 360 g~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~ 439 (1088)
|++.+.|+.+|.+++|+..+..++ ...
T Consensus 463 Gk~avIGt~~G~C~fY~t~~lk~~---------------------------------------~~~-------------- 489 (712)
T KOG0283|consen 463 GKGAVIGTFNGYCRFYDTEGLKLV---------------------------------------SDF-------------- 489 (712)
T ss_pred CceEEEEEeccEEEEEEccCCeEE---------------------------------------Eee--------------
Confidence 999999999999999998542110 000
Q ss_pred CeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeecc
Q 001391 440 GYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAG 519 (1088)
Q Consensus 440 g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~ 519 (1088)
.+++...+. .. ...|+.+.+.+.. .+.+++.+.|..|+|||..+..+..+. +....
T Consensus 490 ----~I~~~~~Kk--------~~-~~rITG~Q~~p~~-------~~~vLVTSnDSrIRI~d~~~~~lv~Kf----KG~~n 545 (712)
T KOG0283|consen 490 ----HIRLHNKKK--------KQ-GKRITGLQFFPGD-------PDEVLVTSNDSRIRIYDGRDKDLVHKF----KGFRN 545 (712)
T ss_pred ----eEeeccCcc--------cc-CceeeeeEecCCC-------CCeEEEecCCCceEEEeccchhhhhhh----ccccc
Confidence 000111111 11 1256677665542 346788888999999998665544332 22222
Q ss_pred ccceeeeEEEeecCCCeEEEEECCCCeEEEEecCC
Q 001391 520 IERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCD 554 (1088)
Q Consensus 520 ~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~ 554 (1088)
...++. ..++.||+++++++.|..|++|+.+.
T Consensus 546 ~~SQ~~---Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 546 TSSQIS---ASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred CCccee---eeEccCCCEEEEeecCceEEEEeCCC
Confidence 233333 45778999999999999999999874
No 69
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.2e-21 Score=199.69 Aligned_cols=278 Identities=14% Similarity=0.186 Sum_probs=220.0
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g 95 (1088)
.+.|.+|.|+ ++ |.+|++++ |.+|+|||+.+|+.++++..++- .|..++|. ...+ .++.++.
T Consensus 14 ~~~i~sl~fs--~~----G~~litss~dDsl~LYd~~~g~~~~ti~skky-G~~~~~Ft-------h~~~---~~i~sSt 76 (311)
T KOG1446|consen 14 NGKINSLDFS--DD----GLLLITSSEDDSLRLYDSLSGKQVKTINSKKY-GVDLACFT-------HHSN---TVIHSST 76 (311)
T ss_pred CCceeEEEec--CC----CCEEEEecCCCeEEEEEcCCCceeeEeecccc-cccEEEEe-------cCCc---eEEEccC
Confidence 4679999999 88 88888876 68999999999999999998554 69999997 3321 5555554
Q ss_pred --CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEe
Q 001391 96 --EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1088)
Q Consensus 96 --d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~ 173 (1088)
|.+||..++.. .+.++.+.||.+.|.+++.+| -++.+++++.|++|++||++..++...+
T Consensus 77 k~d~tIryLsl~d---------------NkylRYF~GH~~~V~sL~~sP---~~d~FlS~S~D~tvrLWDlR~~~cqg~l 138 (311)
T KOG1446|consen 77 KEDDTIRYLSLHD---------------NKYLRYFPGHKKRVNSLSVSP---KDDTFLSSSLDKTVRLWDLRVKKCQGLL 138 (311)
T ss_pred CCCCceEEEEeec---------------CceEEEcCCCCceEEEEEecC---CCCeEEecccCCeEEeeEecCCCCceEE
Confidence 89999999985 579999999999999999999 7789999999999999999988877666
Q ss_pred ccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe
Q 001391 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1088)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1088)
....+.+ ++ ++|+|.++|++...+.|++||++.- ...+...+.
T Consensus 139 ~~~~~pi---~A---fDp~GLifA~~~~~~~IkLyD~Rs~-------------------------------dkgPF~tf~ 181 (311)
T KOG1446|consen 139 NLSGRPI---AA---FDPEGLIFALANGSELIKLYDLRSF-------------------------------DKGPFTTFS 181 (311)
T ss_pred ecCCCcc---ee---ECCCCcEEEEecCCCeEEEEEeccc-------------------------------CCCCceeEc
Confidence 5444332 22 2799999999988889999999821 122333332
Q ss_pred ---CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcc---eEEEEEC--CCEEEEEe
Q 001391 254 ---GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR---VWDCCLT--DSFIITAG 325 (1088)
Q Consensus 254 ---gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~---I~~v~~~--~~~l~sg~ 325 (1088)
+-......|.|+|||++++.+...+.+.+.|.-++.. .. .+.++... -...+|. ++++++|+
T Consensus 182 i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~--------~~--tfs~~~~~~~~~~~a~ftPds~Fvl~gs 251 (311)
T KOG1446|consen 182 ITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV--------KS--TFSGYPNAGNLPLSATFTPDSKFVLSGS 251 (311)
T ss_pred cCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE--------ee--eEeeccCCCCcceeEEECCCCcEEEEec
Confidence 4467789999999999999999999999999988643 22 33343322 2566776 58999999
Q ss_pred CCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 326 EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 326 ~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
.||+|.+|++ +|+.+..+++....++.++.|+|.-..++++ +..+.+|-..
T Consensus 252 ~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~ 303 (311)
T KOG1446|consen 252 DDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD 303 (311)
T ss_pred CCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecc
Confidence 9999999999 8999999988433379999999987666665 5678888664
No 70
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=9.3e-23 Score=218.17 Aligned_cols=280 Identities=16% Similarity=0.251 Sum_probs=224.7
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g 95 (1088)
...+|++++|+ |. .... +|+.+.-.+.||+..+...+.++.-|+. .|.++.|. .|| .++|+++
T Consensus 25 e~~~vssl~fs--p~--~P~d-~aVt~S~rvqly~~~~~~~~k~~srFk~-~v~s~~fR-------~DG----~LlaaGD 87 (487)
T KOG0310|consen 25 EHNSVSSLCFS--PK--HPYD-FAVTSSVRVQLYSSVTRSVRKTFSRFKD-VVYSVDFR-------SDG----RLLAAGD 87 (487)
T ss_pred ccCcceeEecC--CC--CCCc-eEEecccEEEEEecchhhhhhhHHhhcc-ceeEEEee-------cCC----eEEEccC
Confidence 45789999999 86 2222 4444456799999998888887877777 69999999 898 7777777
Q ss_pred -CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 96 -EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 96 -d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.|.|+|+|+.+ -..++.+.+|+.+|..+.|+| .++..+++|+.|+.+++||+.+......+.
T Consensus 88 ~sG~V~vfD~k~---------------r~iLR~~~ah~apv~~~~f~~--~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~ 150 (487)
T KOG0310|consen 88 ESGHVKVFDMKS---------------RVILRQLYAHQAPVHVTKFSP--QDNTMLVSGSDDKVVKYWDLSTAYVQAELS 150 (487)
T ss_pred CcCcEEEecccc---------------HHHHHHHhhccCceeEEEecc--cCCeEEEecCCCceEEEEEcCCcEEEEEec
Confidence 69999999653 246778899999999999999 356688999999999999999998766777
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
+|+. .+-+.++. +.++.++++|+.||.|++||.+. ....+.++ .
T Consensus 151 ~htD-YVR~g~~~--~~~~hivvtGsYDg~vrl~DtR~--------------------------------~~~~v~el-n 194 (487)
T KOG0310|consen 151 GHTD-YVRCGDIS--PANDHIVVTGSYDGKVRLWDTRS--------------------------------LTSRVVEL-N 194 (487)
T ss_pred CCcc-eeEeeccc--cCCCeEEEecCCCceEEEEEecc--------------------------------CCceeEEe-c
Confidence 6654 34444443 34567999999999999999981 12444444 5
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEE
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRV 332 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~v 332 (1088)
|..+|-.+.+.|.|..+++++.. .|++||+.++. +.+. ....|...|+|+++. +..|++|+-|+.+++
T Consensus 195 hg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~-------qll~--~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKV 264 (487)
T KOG0310|consen 195 HGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGG-------QLLT--SMFNHNKTVTCLRLASDSTRLLSGSLDRHVKV 264 (487)
T ss_pred CCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCc-------eehh--hhhcccceEEEEEeecCCceEeecccccceEE
Confidence 99999999999999999999875 79999999763 3332 445599999999998 589999999999999
Q ss_pred EcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 333 Wd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
||+ +-+.+..+... + +|.+++++|+++.++.|..||.+.+-+.
T Consensus 265 fd~t~~Kvv~s~~~~-~-pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 265 FDTTNYKVVHSWKYP-G-PVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred EEccceEEEEeeecc-c-ceeeEEecCCCceEEEecccceeeeehh
Confidence 998 66777777654 4 7999999999999999999998877643
No 71
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.3e-23 Score=228.85 Aligned_cols=270 Identities=17% Similarity=0.291 Sum_probs=216.8
Q ss_pred CCEEEEEe-CCeEEEEECCCC------eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccC
Q 001391 35 LPFLLAGS-GSQVLLYDLEAG------TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFE 107 (1088)
Q Consensus 35 ~~~laag~-d~~I~vwd~~tg------~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~ 107 (1088)
++||.+|+ ||.|++|+...- ..+.+++.|.. .|..+... .+++ .++.++.|-+|++|+....
T Consensus 37 ~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsD-WVNDiiL~-------~~~~---tlIS~SsDtTVK~W~~~~~ 105 (735)
T KOG0308|consen 37 GRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSD-WVNDIILC-------GNGK---TLISASSDTTVKVWNAHKD 105 (735)
T ss_pred CceEEecCCCceEEEeccccccCCcccchhhhhhhhHh-HHhhHHhh-------cCCC---ceEEecCCceEEEeecccC
Confidence 67899988 899999997532 24677787666 68888877 5553 6778888999999998854
Q ss_pred CCCCCCCCCccccccceeeeccCCCCcEEEEEE-ecccCCCCEEEEEEcCCcEEEEEcCCCc--eEEE--------eccC
Q 001391 108 LSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCF-LKVCNGNRSLAIGCSDNSIRVWDISNSS--IILE--------VHSP 176 (1088)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f-~p~~~d~~~lasgs~Dg~V~iWd~~~~~--~~~~--------~~~~ 176 (1088)
. --+..++..|.+.|.|+++ .+ +..++|+||-|+.|.+||++++. .+.+ +..+
T Consensus 106 ~-------------~~c~stir~H~DYVkcla~~ak---~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG 169 (735)
T KOG0308|consen 106 N-------------TFCMSTIRTHKDYVKCLAYIAK---NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSG 169 (735)
T ss_pred c-------------chhHhhhhcccchheeeeeccc---CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCC
Confidence 3 2567788899999999999 66 88899999999999999999873 2222 2224
Q ss_pred CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCC
Q 001391 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (1088)
Q Consensus 177 ~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 256 (1088)
....+|+++. .+.+..|++|+..+.|++||.+ +.+.+..++||+
T Consensus 170 ~k~siYSLA~---N~t~t~ivsGgtek~lr~wDpr---------------------------------t~~kimkLrGHT 213 (735)
T KOG0308|consen 170 PKDSIYSLAM---NQTGTIIVSGGTEKDLRLWDPR---------------------------------TCKKIMKLRGHT 213 (735)
T ss_pred Cccceeeeec---CCcceEEEecCcccceEEeccc---------------------------------cccceeeeeccc
Confidence 4566888876 5777899999999999999999 778888899999
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC--CEEEEEeCCCcEEEEc
Q 001391 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWG 334 (1088)
Q Consensus 257 ~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~--~~l~sg~~Dg~i~vWd 334 (1088)
..|..+..++||..++|+|.||+|++||+... +++. ++..|...||++..++ .++++|+.||.|..=|
T Consensus 214 dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ--------rCl~--T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Td 283 (735)
T KOG0308|consen 214 DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ--------RCLA--TYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTD 283 (735)
T ss_pred cceEEEEEcCCCCeEeecCCCceEEeeecccc--------ceee--eEEeccCceEEEeeCCCcceEEecCCCCcEEecc
Confidence 99999999999999999999999999999885 4554 7889999999999985 6899999999999988
Q ss_pred CCC-ceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 335 SDG-KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 335 ~~~-~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
+.. .....+-.... +|..+..+...+-+-++..|+.|+-|...
T Consensus 284 l~n~~~~tlick~da-Pv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 284 LRNPAKSTLICKEDA-PVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred cCCchhheEeecCCC-chhhhhhccccCCceeeeccccceecCCc
Confidence 833 22222222222 68888887555555777889999999774
No 72
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.91 E-value=2.6e-22 Score=233.48 Aligned_cols=277 Identities=21% Similarity=0.312 Sum_probs=223.5
Q ss_pred eeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeee-ccCCCCcEEEEE
Q 001391 61 QVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQS-LPRLSHWVFDVC 139 (1088)
Q Consensus 61 ~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~-l~~h~~~I~~v~ 139 (1088)
.+++...+.+..|. ++ .++..+.+++|++|+... ...+.. +.||.+.|++++
T Consensus 204 ~~~~~~~~~~~q~~--------~~----~~~~~s~~~tl~~~~~~~---------------~~~i~~~l~GH~g~V~~l~ 256 (537)
T KOG0274|consen 204 LGTDDHVVLCLQLH--------DG----FFKSGSDDSTLHLWDLNN---------------GYLILTRLVGHFGGVWGLA 256 (537)
T ss_pred cccCcchhhhheee--------cC----eEEecCCCceeEEeeccc---------------ceEEEeeccCCCCCceeEE
Confidence 33344456666665 22 666677799999999885 345555 999999999999
Q ss_pred EecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCC
Q 001391 140 FLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLL 219 (1088)
Q Consensus 140 f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~ 219 (1088)
+.. .+.+|++|+.|.++++||..++++...+.++... +..+. .....+++|+.|.+|++|++.
T Consensus 257 ~~~---~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~st-v~~~~-----~~~~~~~sgs~D~tVkVW~v~-------- 319 (537)
T KOG0274|consen 257 FPS---GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSS-VRCLT-----IDPFLLVSGSRDNTVKVWDVT-------- 319 (537)
T ss_pred Eec---CCCEEEEEecCCcEEeEecCCCcEEEEecCCCce-EEEEE-----ccCceEeeccCCceEEEEecc--------
Confidence 976 6889999999999999999999999999877543 44443 346688889999999999998
Q ss_pred CCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceee
Q 001391 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEV 299 (1088)
Q Consensus 220 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i 299 (1088)
.+..+..+.+|.++|+++..+ +.++++|+.|++|++||+.+. +++
T Consensus 320 -------------------------n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~--------~cl 364 (537)
T KOG0274|consen 320 -------------------------NGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG--------KCL 364 (537)
T ss_pred -------------------------CcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhc--------eee
Confidence 788899999999999999997 889999999999999999974 566
Q ss_pred eceeeeccCcceEEEEECC-CEEEEEeCCCcEEEEcC-CC-ceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 001391 300 GSSVLYGHNARVWDCCLTD-SFIITAGEDCTCRVWGS-DG-KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 300 ~~~~~~~h~~~I~~v~~~~-~~l~sg~~Dg~i~vWd~-~~-~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd 376 (1088)
. .+.+|..+|.++.+.+ ..+++|+.|++|++||+ +. +++.++.+|.. -+..+.+ .+++|++++.|++|++||
T Consensus 365 ~--sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~-~v~~l~~--~~~~Lvs~~aD~~Ik~WD 439 (537)
T KOG0274|consen 365 K--SLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS-LVSSLLL--RDNFLVSSSADGTIKLWD 439 (537)
T ss_pred e--eecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcc-ccccccc--ccceeEeccccccEEEee
Confidence 5 8999999999999998 99999999999999999 55 68999999987 4655444 567899999999999999
Q ss_pred cC-CCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCC
Q 001391 377 FQ-AFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMD 451 (1088)
Q Consensus 377 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~ 451 (1088)
.. +++++++++. +...|..+++. +..+++++.+|.+..+++....
T Consensus 440 ~~~~~~~~~~~~~-----------------------------~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 440 AEEGECLRTLEGR-----------------------------HVGGVSALALG-KEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred cccCceeeeeccC-----------------------------CcccEEEeecC-cceEEEEecCCeeEEEecccCc
Confidence 84 3444433321 22456777766 4588899999999876655443
No 73
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.91 E-value=7.8e-24 Score=225.78 Aligned_cols=281 Identities=18% Similarity=0.254 Sum_probs=223.5
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCC-CeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA-GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t-g~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~ 93 (1088)
|...|+++.|. |- .+.||++|+ |+.|+|||+-. ++++++|.+|.. .|..++|+ ++|. .+|.+
T Consensus 213 H~kgvsai~~f--p~---~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k-~Vrd~~~s-------~~g~---~fLS~ 276 (503)
T KOG0282|consen 213 HTKGVSAIQWF--PK---KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRK-PVRDASFN-------NCGT---SFLSA 276 (503)
T ss_pred Cccccchhhhc--cc---eeeEEEecCCCceEEEEEEecCcceehhhhcchh-hhhhhhcc-------ccCC---eeeee
Confidence 55779999999 83 378999988 89999999876 899999999776 79999999 7773 55666
Q ss_pred ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCC-CEEEEEEcCCcEEEEEcCCCceEEE
Q 001391 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNSSIILE 172 (1088)
Q Consensus 94 ~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~-~~lasgs~Dg~V~iWd~~~~~~~~~ 172 (1088)
+-|+.+++||.+++ +....+. -...++|+.|+| ++ +.+++|+.|+.|+.||+++++.+++
T Consensus 277 sfD~~lKlwDtETG---------------~~~~~f~-~~~~~~cvkf~p---d~~n~fl~G~sd~ki~~wDiRs~kvvqe 337 (503)
T KOG0282|consen 277 SFDRFLKLWDTETG---------------QVLSRFH-LDKVPTCVKFHP---DNQNIFLVGGSDKKIRQWDIRSGKVVQE 337 (503)
T ss_pred ecceeeeeeccccc---------------eEEEEEe-cCCCceeeecCC---CCCcEEEEecCCCcEEEEeccchHHHHH
Confidence 66999999999974 3444332 235689999999 66 7889999999999999999998888
Q ss_pred eccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE
Q 001391 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1088)
Q Consensus 173 ~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1088)
+..+.+++ ..+.| -+++..+++.+.|++++||+.+ ...++...
T Consensus 338 Yd~hLg~i-~~i~F---~~~g~rFissSDdks~riWe~~---------------------------------~~v~ik~i 380 (503)
T KOG0282|consen 338 YDRHLGAI-LDITF---VDEGRRFISSSDDKSVRIWENR---------------------------------IPVPIKNI 380 (503)
T ss_pred HHhhhhhe-eeeEE---ccCCceEeeeccCccEEEEEcC---------------------------------CCccchhh
Confidence 77776653 34555 3678999999999999999998 22222221
Q ss_pred -eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcc--eEEEEEC--CCEEEEEeCC
Q 001391 253 -VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR--VWDCCLT--DSFIITAGED 327 (1088)
Q Consensus 253 -~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~--I~~v~~~--~~~l~sg~~D 327 (1088)
..+.-...++..+|++++++.-+.|..|.++.+...-. ...- ..+.||... -..+.|+ +.+|++|..|
T Consensus 381 ~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r-----~nkk--K~feGh~vaGys~~v~fSpDG~~l~SGdsd 453 (503)
T KOG0282|consen 381 ADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR-----LNKK--KRFEGHSVAGYSCQVDFSPDGRTLCSGDSD 453 (503)
T ss_pred cchhhccCcceecCCCCCeehhhccCceEEEEecccccc-----cCHh--hhhcceeccCceeeEEEcCCCCeEEeecCC
Confidence 22334567889999999999999999999999765321 1111 266777543 4556777 6899999999
Q ss_pred CcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEEE
Q 001391 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 328 g~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg-~~l~tg~~Dg~I~iwd 376 (1088)
|.+.+||. +.+.+..++.|.+ ++..+.|+|.. ..+||+|.||.|++|+
T Consensus 454 G~v~~wdwkt~kl~~~lkah~~-~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 454 GKVNFWDWKTTKLVSKLKAHDQ-PCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ccEEEeechhhhhhhccccCCc-ceEEEEecCCCcceeEecccCceeEecC
Confidence 99999999 7788999999987 79999999965 4799999999999996
No 74
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.91 E-value=1.3e-22 Score=200.68 Aligned_cols=279 Identities=15% Similarity=0.201 Sum_probs=217.4
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|..|++-|.|. .+ |.+|.++. |.+..||=...|+.+.++.+|.+ .|+++++. -+.+ .++..+
T Consensus 9 HERplTqiKyN--~e----GDLlFscaKD~~~~vw~s~nGerlGty~GHtG-avW~~Did-------~~s~---~liTGS 71 (327)
T KOG0643|consen 9 HERPLTQIKYN--RE----GDLLFSCAKDSTPTVWYSLNGERLGTYDGHTG-AVWCCDID-------WDSK---HLITGS 71 (327)
T ss_pred CccccceEEec--CC----CcEEEEecCCCCceEEEecCCceeeeecCCCc-eEEEEEec-------CCcc---eeeecc
Confidence 56899999999 88 89999988 89999999999999999999988 69999998 5542 566667
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc-----CCcEEEEEcC----
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-----DNSIRVWDIS---- 165 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~-----Dg~V~iWd~~---- 165 (1088)
+|.+++|||++++ +.+..++ ....|..+.|++ +|++++.... .+.|.++|++
T Consensus 72 AD~t~kLWDv~tG---------------k~la~~k-~~~~Vk~~~F~~---~gn~~l~~tD~~mg~~~~v~~fdi~~~~~ 132 (327)
T KOG0643|consen 72 ADQTAKLWDVETG---------------KQLATWK-TNSPVKRVDFSF---GGNLILASTDKQMGYTCFVSVFDIRDDSS 132 (327)
T ss_pred ccceeEEEEcCCC---------------cEEEEee-cCCeeEEEeecc---CCcEEEEEehhhcCcceEEEEEEccCChh
Confidence 7999999999964 4555544 457899999999 8887766543 4579999997
Q ss_pred ---CCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccc
Q 001391 166 ---NSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (1088)
Q Consensus 166 ---~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 242 (1088)
..++...+..++.. +.++-+ ++-+..|++|..||.|.+||++
T Consensus 133 ~~~s~ep~~kI~t~~sk-it~a~W---g~l~~~ii~Ghe~G~is~~da~------------------------------- 177 (327)
T KOG0643|consen 133 DIDSEEPYLKIPTPDSK-ITSALW---GPLGETIIAGHEDGSISIYDAR------------------------------- 177 (327)
T ss_pred hhcccCceEEecCCccc-eeeeee---cccCCEEEEecCCCcEEEEEcc-------------------------------
Confidence 34456666666633 333333 5778999999999999999998
Q ss_pred ccce-eeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC--C
Q 001391 243 QHTA-VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--S 319 (1088)
Q Consensus 243 ~~~~-~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~--~ 319 (1088)
++ +.+..-..|+..|+.+.++||..+++|+|.|.+.++||+.+. +.++ .+....+|.+.+++| +
T Consensus 178 --~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl--------~v~K---ty~te~PvN~aaisP~~d 244 (327)
T KOG0643|consen 178 --TGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL--------EVLK---TYTTERPVNTAAISPLLD 244 (327)
T ss_pred --cCceeeechhhhccccccccccCCcceEEecccCccceeeeccce--------eeEE---Eeeecccccceecccccc
Confidence 43 445555789999999999999999999999999999999984 4443 334456888999884 4
Q ss_pred EEEEE-eCCCc-------------EEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 320 FIITA-GEDCT-------------CRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 320 ~l~sg-~~Dg~-------------i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
.++.| +.+.. .|.|++ -.+.+..+++|-+ ||.+++|+|+|+..++||.||.|+++-.+.
T Consensus 245 ~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG-PINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 245 HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG-PINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc-CcceeEECCCCcccccCCCCceEEEEEecc
Confidence 44444 43321 122222 1245677899999 899999999999999999999999997743
No 75
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=1.6e-22 Score=224.08 Aligned_cols=284 Identities=19% Similarity=0.320 Sum_probs=226.9
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEE--EeccCCceeEEEEeeecCCCCCcEEEEE
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL--EVHSPERCLLYSMKLWGDNLEALRIASG 199 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~--~~~~~~~~~~~s~~~~~~s~~~~~l~sg 199 (1088)
.++.+.+.+|...|..+++.+ +..++++|.||++++|+-..++.+. .+..|.+.+..+.++.. .++-.+++|
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~----~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e--~~~~~l~~g 77 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTD----GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE--SDKGRLVVG 77 (745)
T ss_pred ceeEEEeccCccchheeEecC----CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceecc--ccCcceEee
Confidence 467788899999999999864 5579999999999999987666554 45567777777677643 355679999
Q ss_pred ecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCc
Q 001391 200 TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRS 279 (1088)
Q Consensus 200 ~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~ 279 (1088)
+.|.+|.+|... ...++..++||+..|.+++...++. ++|||.|.+
T Consensus 78 ~~D~~i~v~~~~---------------------------------~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~T 123 (745)
T KOG0301|consen 78 GMDTTIIVFKLS---------------------------------QAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDST 123 (745)
T ss_pred cccceEEEEecC---------------------------------CCCchhhhhccccceeeeecCCcCc-eEecccccc
Confidence 999999999998 7889999999999999999888877 999999999
Q ss_pred EEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcC
Q 001391 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDS 358 (1088)
Q Consensus 280 v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~ 358 (1088)
+++|....... .+.+|+..||++... .+.++||+.|.+|++|.- ++.+++|.+|.. .|..+++.+
T Consensus 124 akvW~~~~l~~------------~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~-~~~l~tf~gHtD-~VRgL~vl~ 189 (745)
T KOG0301|consen 124 AKVWRIGELVY------------SLQGHTASVWAVASLPENTYVTGSADKTIKLWKG-GTLLKTFSGHTD-CVRGLAVLD 189 (745)
T ss_pred eEEecchhhhc------------ccCCcchheeeeeecCCCcEEeccCcceeeeccC-Cchhhhhccchh-heeeeEEec
Confidence 99999866422 789999999999887 579999999999999986 888999999998 799999998
Q ss_pred CCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEecc-CCeEEEEe
Q 001391 359 LSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTS-EDTLYIAT 437 (1088)
Q Consensus 359 dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~~~ll~~t 437 (1088)
++. +++++.||.|++|++.+.++..+. +|...|.++.... ++.++.++
T Consensus 190 ~~~-flScsNDg~Ir~w~~~ge~l~~~~------------------------------ghtn~vYsis~~~~~~~Ivs~g 238 (745)
T KOG0301|consen 190 DSH-FLSCSNDGSIRLWDLDGEVLLEMH------------------------------GHTNFVYSISMALSDGLIVSTG 238 (745)
T ss_pred CCC-eEeecCCceEEEEeccCceeeeee------------------------------ccceEEEEEEecCCCCeEEEec
Confidence 854 789999999999999776554443 4556788888444 45556666
Q ss_pred cCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCC
Q 001391 438 NHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDV 505 (1088)
Q Consensus 438 ~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~ 505 (1088)
.++.+..| ... ...+....+ ...+++..+..+ .-|++|+.||.||||..+..+
T Consensus 239 EDrtlriW---~~~--e~~q~I~lP-ttsiWsa~~L~N---------gDIvvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 239 EDRTLRIW---KKD--ECVQVITLP-TTSIWSAKVLLN---------GDIVVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred CCceEEEe---ecC--ceEEEEecC-ccceEEEEEeeC---------CCEEEeccCceEEEEEecccc
Confidence 77777744 433 222333333 457888777655 468999999999999887544
No 76
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.90 E-value=1.9e-23 Score=218.42 Aligned_cols=276 Identities=18% Similarity=0.270 Sum_probs=224.5
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCe--eEEEEeeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~--~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
|.+.|..+.|. ++ ...|++|. |..|++|+...++ .+.++.+..+ .|..++|. ++++ ..|+
T Consensus 174 h~gev~~v~~l--~~----sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g-~it~~d~d-------~~~~---~~iA 236 (459)
T KOG0288|consen 174 HEGEVHDVEFL--RN----SDTLATGGSDRIIKLWNVLGEKSELISTLAGSLG-NITSIDFD-------SDNK---HVIA 236 (459)
T ss_pred cccccceeEEc--cC----cchhhhcchhhhhhhhhcccchhhhhhhhhccCC-Ccceeeec-------CCCc---eEEe
Confidence 67889999999 87 56788866 8999999987766 6667776445 69999998 6663 7777
Q ss_pred EECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEE
Q 001391 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1088)
Q Consensus 93 ~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~ 172 (1088)
.+.|+.+++|++.. .+...+|.||++.|+++.|.. ....+++|+.|.+|++||+....+..+
T Consensus 237 as~d~~~r~Wnvd~---------------~r~~~TLsGHtdkVt~ak~~~---~~~~vVsgs~DRtiK~WDl~k~~C~kt 298 (459)
T KOG0288|consen 237 ASNDKNLRLWNVDS---------------LRLRHTLSGHTDKVTAAKFKL---SHSRVVSGSADRTIKLWDLQKAYCSKT 298 (459)
T ss_pred ecCCCceeeeeccc---------------hhhhhhhcccccceeeehhhc---cccceeeccccchhhhhhhhhhheecc
Confidence 78899999999984 578889999999999999987 555699999999999999999988887
Q ss_pred eccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE
Q 001391 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1088)
Q Consensus 173 ~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1088)
+.....+.-..+ ....+++|-.|+.|++||.+ ...+....
T Consensus 299 ~l~~S~cnDI~~-------~~~~~~SgH~DkkvRfwD~R---------------------------------s~~~~~sv 338 (459)
T KOG0288|consen 299 VLPGSQCNDIVC-------SISDVISGHFDKKVRFWDIR---------------------------------SADKTRSV 338 (459)
T ss_pred ccccccccceEe-------cceeeeecccccceEEEecc---------------------------------CCceeeEe
Confidence 765544332221 15678899999999999998 56666666
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeec--cCcceEEEEEC--CCEEEEEeCCC
Q 001391 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG--HNARVWDCCLT--DSFIITAGEDC 328 (1088)
Q Consensus 253 ~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~--h~~~I~~v~~~--~~~l~sg~~Dg 328 (1088)
..|. .|+++..++++..+++++.|.++.+.|+++... ..++ ...+ -....+.+.|+ +.|+++|+.||
T Consensus 339 ~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI-----~~~~---sA~g~k~asDwtrvvfSpd~~YvaAGS~dg 409 (459)
T KOG0288|consen 339 PLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI-----RQTF---SAEGFKCASDWTRVVFSPDGSYVAAGSADG 409 (459)
T ss_pred ecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccE-----EEEe---eccccccccccceeEECCCCceeeeccCCC
Confidence 6665 899999999999999999999999999998543 1111 2222 12337788898 58999999999
Q ss_pred cEEEEcC-CCceeEEEcccCCC-CeEEEEEcCCCCEEEEEeCCCCEEEE
Q 001391 329 TCRVWGS-DGKQLKMIKEHIGR-GIWRCLYDSLSSLLVTAGFDSAIKVH 375 (1088)
Q Consensus 329 ~i~vWd~-~~~~~~~~~~h~~~-~V~~l~~~~dg~~l~tg~~Dg~I~iw 375 (1088)
.|+||++ ++++...+...... +|++++|+|.|..|++++.++.+.+|
T Consensus 410 sv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 410 SVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred cEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 9999999 78887777665442 59999999999999999999999999
No 77
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=2.5e-23 Score=209.78 Aligned_cols=283 Identities=18% Similarity=0.250 Sum_probs=219.1
Q ss_pred CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCC-------ceeEEEEeeecCCCCCcEEEEEecC
Q 001391 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE-------RCLLYSMKLWGDNLEALRIASGTIY 202 (1088)
Q Consensus 130 ~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~-------~~~~~s~~~~~~s~~~~~l~sg~~d 202 (1088)
+....+-|..|+| ||++|++|+.||.|.+||..+|+..+-++... ...+.++.| +.|..++|+|+.|
T Consensus 211 g~KSh~EcA~FSP---DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~F---SRDsEMlAsGsqD 284 (508)
T KOG0275|consen 211 GQKSHVECARFSP---DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISF---SRDSEMLASGSQD 284 (508)
T ss_pred ccccchhheeeCC---CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEee---cccHHHhhccCcC
Confidence 4456789999999 99999999999999999999998765544221 112333443 7888999999999
Q ss_pred CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe-CCCCCEEEEEEcCCCCEEEEEECCCcEE
Q 001391 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-GHEGSIFRIEWSSCGSKLVSVSDDRSAR 281 (1088)
Q Consensus 203 g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~v~~sp~g~~l~s~s~Dg~v~ 281 (1088)
|.|++|.+. ++.++++|. .|+..|+++.|+.|+..+++++.|.++|
T Consensus 285 GkIKvWri~---------------------------------tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvR 331 (508)
T KOG0275|consen 285 GKIKVWRIE---------------------------------TGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVR 331 (508)
T ss_pred CcEEEEEEe---------------------------------cchHHHHhhhhhccCeeEEEEccCcchhhcccccceEE
Confidence 999999999 788888887 8999999999999999999999999999
Q ss_pred EEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccC-CCCeEEEEEc
Q 001391 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHI-GRGIWRCLYD 357 (1088)
Q Consensus 282 iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~-~~~V~~l~~~ 357 (1088)
+.-+.+++ .++ .+.||...|..+.|. |..+++++.||+++||+. +++++.+++... ..+|.++...
T Consensus 332 iHGlKSGK--------~LK--EfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~ 401 (508)
T KOG0275|consen 332 IHGLKSGK--------CLK--EFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILL 401 (508)
T ss_pred Eeccccch--------hHH--HhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEc
Confidence 99999864 444 788999999999998 789999999999999999 888888886533 3368888887
Q ss_pred CCC-CEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCe-EEE
Q 001391 358 SLS-SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT-LYI 435 (1088)
Q Consensus 358 ~dg-~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~-ll~ 435 (1088)
|.. ..++.+.+.++|.|.++.++.++++.... ...+..-+.+.+|.|. +++
T Consensus 402 PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGk---------------------------REgGdFi~~~lSpkGewiYc 454 (508)
T KOG0275|consen 402 PKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGK---------------------------REGGDFINAILSPKGEWIYC 454 (508)
T ss_pred CCCCceEEEEcCCCeEEEEeccceEEeeeccCC---------------------------ccCCceEEEEecCCCcEEEE
Confidence 754 57888999999999999887655443211 1123345566788774 566
Q ss_pred EecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEE
Q 001391 436 ATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (1088)
Q Consensus 436 ~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~ 500 (1088)
.+.++.+|.+..... ..+..+..++. .+..+.- .|..+++|+-++||.+++|.
T Consensus 455 igED~vlYCF~~~sG---~LE~tl~VhEk-dvIGl~H--------HPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 455 IGEDGVLYCFSVLSG---KLERTLPVHEK-DVIGLTH--------HPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EccCcEEEEEEeecC---ceeeeeecccc-ccccccc--------CcccchhhhhcccchhhhcC
Confidence 677888886655443 33344444533 2333333 24669999999999999994
No 78
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.90 E-value=1.9e-21 Score=192.49 Aligned_cols=296 Identities=14% Similarity=0.193 Sum_probs=224.3
Q ss_pred EeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEE
Q 001391 60 FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVC 139 (1088)
Q Consensus 60 ~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~ 139 (1088)
+++|+. ++..|.+. .+| +.++.++.|.++.||--.. .+.+.++.||++.|||++
T Consensus 6 l~GHER-plTqiKyN-------~eG---DLlFscaKD~~~~vw~s~n---------------GerlGty~GHtGavW~~D 59 (327)
T KOG0643|consen 6 LQGHER-PLTQIKYN-------REG---DLLFSCAKDSTPTVWYSLN---------------GERLGTYDGHTGAVWCCD 59 (327)
T ss_pred cccCcc-ccceEEec-------CCC---cEEEEecCCCCceEEEecC---------------CceeeeecCCCceEEEEE
Confidence 567777 79999999 666 4677777799999997643 578899999999999999
Q ss_pred EecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEec-----CCeEEEEEeccCc
Q 001391 140 FLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI-----YNEIIVWKVDWEH 214 (1088)
Q Consensus 140 f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~-----dg~I~vwd~~~~~ 214 (1088)
..- +.++|+||+.|.++++||+++|+++.+++.+. .+..+.| +.++++++..+. .+.|.++|++...
T Consensus 60 id~---~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~--~Vk~~~F---~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~ 131 (327)
T KOG0643|consen 60 IDW---DSKHLITGSADQTAKLWDVETGKQLATWKTNS--PVKRVDF---SFGGNLILASTDKQMGYTCFVSVFDIRDDS 131 (327)
T ss_pred ecC---CcceeeeccccceeEEEEcCCCcEEEEeecCC--eeEEEee---ccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence 988 89999999999999999999999999987554 3444444 677877776654 4679999988221
Q ss_pred cccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCC
Q 001391 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD 294 (1088)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~ 294 (1088)
.. .....++..+..++..++.+-|.|-+++|++|..||.|.+||.+++.
T Consensus 132 ~~--------------------------~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~----- 180 (327)
T KOG0643|consen 132 SD--------------------------IDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK----- 180 (327)
T ss_pred hh--------------------------hcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc-----
Confidence 10 01456688888899999999999999999999999999999999963
Q ss_pred CceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCC
Q 001391 295 SIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSA 371 (1088)
Q Consensus 295 ~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~ 371 (1088)
+.+. ....|...|.+++++ ..++++++.|.+.++||. +-..++++.... ||.+.+++|....++.||.-..
T Consensus 181 --~~v~--s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~--PvN~aaisP~~d~VilgGGqeA 254 (327)
T KOG0643|consen 181 --ELVD--SDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTER--PVNTAAISPLLDHVILGGGQEA 254 (327)
T ss_pred --eeee--chhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecc--cccceecccccceEEecCCcee
Confidence 3343 567799999999999 579999999999999999 667777776543 7999999998877777664322
Q ss_pred EEEEEcCCC--CCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEe-cCCeEE
Q 001391 372 IKVHQFQAF--LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT-NHGYLY 443 (1088)
Q Consensus 372 I~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t-~~g~i~ 443 (1088)
-|+.+. ..-.++ .+.+.+. ..+.++...+|-++|++++|+|+|+.++++ .+|++.
T Consensus 255 ---~dVTTT~~r~GKFE-----------ArFyh~i---~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR 312 (327)
T KOG0643|consen 255 ---MDVTTTSTRAGKFE-----------ARFYHLI---FEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVR 312 (327)
T ss_pred ---eeeeeecccccchh-----------hhHHHHH---HHHHhccccccccCcceeEECCCCcccccCCCCceEE
Confidence 222110 000010 0011100 123456667899999999999999888765 566654
No 79
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.90 E-value=7.2e-22 Score=207.60 Aligned_cols=278 Identities=17% Similarity=0.273 Sum_probs=228.9
Q ss_pred eeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCC
Q 001391 19 EISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~ 97 (1088)
.|+++... |. ...+++|. |.++.++|..+++.+..+.+|.. .|..+.++ |+. +..+..+.|.
T Consensus 221 gi~ald~~--~s----~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~k-ki~~v~~~-------~~~---~~v~~aSad~ 283 (506)
T KOG0289|consen 221 GITALDII--PS----SSKILTGGEDKTAVLFDKPSNQILATLKGHTK-KITSVKFH-------KDL---DTVITASADE 283 (506)
T ss_pred CeeEEeec--CC----CCcceecCCCCceEEEecchhhhhhhccCcce-EEEEEEec-------cch---hheeecCCcc
Confidence 47788888 65 57888887 78999999999999999999776 79999999 553 2455556699
Q ss_pred EEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccC-
Q 001391 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP- 176 (1088)
Q Consensus 98 ~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~- 176 (1088)
.|+||...... .......|...|+.+..+| .|.||++++.|++..+.|++++..+......
T Consensus 284 ~i~vws~~~~s---------------~~~~~~~h~~~V~~ls~h~---tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~ 345 (506)
T KOG0289|consen 284 IIRVWSVPLSS---------------EPTSSRPHEEPVTGLSLHP---TGEYLLSASNDGTWAFSDISSGSQLTVVSDET 345 (506)
T ss_pred eEEeecccccc---------------Cccccccccccceeeeecc---CCcEEEEecCCceEEEEEccCCcEEEEEeecc
Confidence 99999987532 2344568999999999999 9999999999999999999999988776543
Q ss_pred CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCC
Q 001391 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (1088)
Q Consensus 177 ~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 256 (1088)
......+..| .|||.++.+|+.||.|+|||+. ....+..|.+|+
T Consensus 346 s~v~~ts~~f---HpDgLifgtgt~d~~vkiwdlk---------------------------------s~~~~a~Fpght 389 (506)
T KOG0289|consen 346 SDVEYTSAAF---HPDGLIFGTGTPDGVVKIWDLK---------------------------------SQTNVAKFPGHT 389 (506)
T ss_pred ccceeEEeeE---cCCceEEeccCCCceEEEEEcC---------------------------------CccccccCCCCC
Confidence 3344566777 4889999999999999999998 566788899999
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEc
Q 001391 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWG 334 (1088)
Q Consensus 257 ~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd 334 (1088)
++|..|+|+.+|-+|+++++|+.|++||++..+ .++.+.+ .....+.++.|. +.+++.++.|=.|++++
T Consensus 390 ~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~--------n~kt~~l-~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 390 GPVKAISFSENGYWLATAADDGSVKLWDLRKLK--------NFKTIQL-DEKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred CceeEEEeccCceEEEEEecCCeEEEEEehhhc--------ccceeec-cccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 999999999999999999999999999999853 3331122 223378889997 88999998887777777
Q ss_pred C---CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 335 S---DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 335 ~---~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
- .-.++..+..|.+ ..+.+.|..+.++++++|.|..++++.+
T Consensus 461 k~~k~W~~~~~~~~~sg-~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 461 KKTKSWTEIKELADHSG-LSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cccccceeeehhhhccc-ccceeeecccceEEeeccchhheEEeec
Confidence 4 3356677788887 5889999999999999999999988764
No 80
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.90 E-value=9.8e-23 Score=199.35 Aligned_cols=286 Identities=15% Similarity=0.210 Sum_probs=228.8
Q ss_pred ccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEE
Q 001391 128 LPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIV 207 (1088)
Q Consensus 128 l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~v 207 (1088)
..||+.+|.+++|+|..++|-+|++++.|+.-.+-+-++|..+.++.+|.+. +|+..+ +.+...-|++..|-+-++
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkga-vw~~~l---~~na~~aasaaadftakv 85 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGA-VWSATL---NKNATRAASAAADFTAKV 85 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcc-eeeeec---Cchhhhhhhhcccchhhh
Confidence 4589999999999998889999999999999999999999999999988764 777776 556677888999999999
Q ss_pred EEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001391 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (1088)
Q Consensus 208 wd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~ 287 (1088)
||.- ++..++.|. |+.-|.+++|+.|.++|++|+.++.+|+||++.
T Consensus 86 w~a~---------------------------------tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~ 131 (334)
T KOG0278|consen 86 WDAV---------------------------------TGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNR 131 (334)
T ss_pred hhhh---------------------------------hhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccC
Confidence 9988 666676664 899999999999999999999999999999988
Q ss_pred CcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEE
Q 001391 288 EYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLV 364 (1088)
Q Consensus 288 ~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~ 364 (1088)
.+. +. ..+.+|++.|..+.|. ++.|++...|++||+||. ++..++.+.-.. +|.++.++++|++|.
T Consensus 132 p~A-------pp--~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s--~VtSlEvs~dG~ilT 200 (334)
T KOG0278|consen 132 PKA-------PP--KEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNS--PVTSLEVSQDGRILT 200 (334)
T ss_pred CCC-------Cc--hhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCC--CCcceeeccCCCEEE
Confidence 543 22 2778999999999997 789999999999999999 899999887654 599999999998655
Q ss_pred EEeCCCCEEEEEcCC-CCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCC-eEEEEecCCeE
Q 001391 365 TAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIATNHGYL 442 (1088)
Q Consensus 365 tg~~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~-~ll~~t~~g~i 442 (1088)
+ ..-+.|++||... ..++.+. .| -.|.+....|+. .++++.++.++
T Consensus 201 i-a~gssV~Fwdaksf~~lKs~k------------------~P-------------~nV~SASL~P~k~~fVaGged~~~ 248 (334)
T KOG0278|consen 201 I-AYGSSVKFWDAKSFGLLKSYK------------------MP-------------CNVESASLHPKKEFFVAGGEDFKV 248 (334)
T ss_pred E-ecCceeEEeccccccceeecc------------------Cc-------------cccccccccCCCceEEecCcceEE
Confidence 5 4567899999854 2222111 11 135666677765 55566778889
Q ss_pred EEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCC
Q 001391 443 YHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDV 505 (1088)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~ 505 (1088)
+.++........ .....+-.++.|+.+.|+ +...|+|++||+|++|....++
T Consensus 249 ~kfDy~TgeEi~---~~nkgh~gpVhcVrFSPd--------GE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 249 YKFDYNTGEEIG---SYNKGHFGPVHCVRFSPD--------GELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred EEEeccCCceee---ecccCCCCceEEEEECCC--------CceeeccCCCceEEEEEecCCC
Confidence 887766554422 222334678999998654 5899999999999999886544
No 81
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.90 E-value=6.5e-23 Score=214.43 Aligned_cols=204 Identities=20% Similarity=0.305 Sum_probs=168.2
Q ss_pred ceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc--eEEEeccCCceeEEEEeeecCCCCCcEEEEEe
Q 001391 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS--IILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (1088)
Q Consensus 123 ~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~--~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~ 200 (1088)
.....+..|.+.+.++.|.+ +...|++|+.|..|++|++...+ .+.++.+.. ..+.++.+ .+++..+++.+
T Consensus 166 ~~~~~ld~h~gev~~v~~l~---~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~-g~it~~d~---d~~~~~~iAas 238 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLR---NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSL-GNITSIDF---DSDNKHVIAAS 238 (459)
T ss_pred hhhhhhhccccccceeEEcc---CcchhhhcchhhhhhhhhcccchhhhhhhhhccC-CCcceeee---cCCCceEEeec
Confidence 44556778999999999999 88899999999999999997665 344444332 33556665 67788999999
Q ss_pred cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcE
Q 001391 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280 (1088)
Q Consensus 201 ~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v 280 (1088)
.|+.+++|++. ..+...++.||.+.|+++.|......+++++.|++|
T Consensus 239 ~d~~~r~Wnvd---------------------------------~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRti 285 (459)
T KOG0288|consen 239 NDKNLRLWNVD---------------------------------SLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTI 285 (459)
T ss_pred CCCceeeeecc---------------------------------chhhhhhhcccccceeeehhhccccceeeccccchh
Confidence 99999999998 778889999999999999999887779999999999
Q ss_pred EEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCC
Q 001391 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL 359 (1088)
Q Consensus 281 ~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~d 359 (1088)
++||+....+ .+. .+ ....+.+++..+..+++|-.|++||+||. .+.+......+. .|+++..+++
T Consensus 286 K~WDl~k~~C--------~kt-~l--~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~ 352 (459)
T KOG0288|consen 286 KLWDLQKAYC--------SKT-VL--PGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMD 352 (459)
T ss_pred hhhhhhhhhe--------ecc-cc--ccccccceEecceeeeecccccceEEEeccCCceeeEeecCc--ceeeEeeccC
Confidence 9999998544 321 22 22345666666888999999999999998 777777777765 4999999999
Q ss_pred CCEEEEEeCCCCEEEEEcCC
Q 001391 360 SSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 360 g~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+..|.+++.|.++.++|+++
T Consensus 353 g~~lLsssRDdtl~viDlRt 372 (459)
T KOG0288|consen 353 GLELLSSSRDDTLKVIDLRT 372 (459)
T ss_pred CeEEeeecCCCceeeeeccc
Confidence 99999999999999999864
No 82
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=4.2e-22 Score=213.20 Aligned_cols=295 Identities=18% Similarity=0.230 Sum_probs=216.8
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC----eeEEEEeeeCCcceEEEEecccccccCCCccceeeE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG----TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFE 90 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg----~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~ 90 (1088)
+...|+++++. |. |-.+++|+ |-+|++||...- +.-+.++--+...|..++|+ +.| +.+
T Consensus 166 gtk~Vsal~~D--p~----GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys-------~Tg---~~i 229 (641)
T KOG0772|consen 166 GTKIVSALAVD--PS----GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYS-------VTG---DQI 229 (641)
T ss_pred CceEEEEeeec--CC----CceeeeccccceEEEEecccccccchhhhccCcccccccceeeec-------CCC---CeE
Confidence 55679999999 98 88999988 999999998642 22233333345579999999 555 389
Q ss_pred EEEECCCEEEEEEeccCC----CCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC
Q 001391 91 VALFGEKRVKLFELNFEL----SPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (1088)
Q Consensus 91 la~~gd~~v~iw~l~~~~----~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~ 166 (1088)
|+++|...++|+|-..-. ..+..| ..-+..-+||...++|.+|+|. +.+.++|++.||++||||+..
T Consensus 230 Lvvsg~aqakl~DRdG~~~~e~~KGDQY-------I~Dm~nTKGHia~lt~g~whP~--~k~~FlT~s~DgtlRiWdv~~ 300 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDRDGFEIVEFSKGDQY-------IRDMYNTKGHIAELTCGCWHPD--NKEEFLTCSYDGTLRIWDVNN 300 (641)
T ss_pred EEEecCcceeEEccCCceeeeeeccchh-------hhhhhccCCceeeeeccccccC--cccceEEecCCCcEEEEecCC
Confidence 999999999999976321 111111 1223455799999999999992 345788999999999999986
Q ss_pred Cce-EEEec----cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecc
Q 001391 167 SSI-ILEVH----SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1088)
Q Consensus 167 ~~~-~~~~~----~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 241 (1088)
.+. +..++ ++.+..+.+++| ++++.+||+|..||.|.+|+....
T Consensus 301 ~k~q~qVik~k~~~g~Rv~~tsC~~---nrdg~~iAagc~DGSIQ~W~~~~~---------------------------- 349 (641)
T KOG0772|consen 301 TKSQLQVIKTKPAGGKRVPVTSCAW---NRDGKLIAAGCLDGSIQIWDKGSR---------------------------- 349 (641)
T ss_pred chhheeEEeeccCCCcccCceeeec---CCCcchhhhcccCCceeeeecCCc----------------------------
Confidence 543 22222 333444555554 899999999999999999997610
Q ss_pred cccceeeeEEEeCCCC--CEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--
Q 001391 242 QQHTAVNLFRLVGHEG--SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-- 317 (1088)
Q Consensus 242 ~~~~~~~~~~~~gh~~--~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-- 317 (1088)
.....+..-..|.. .|++|.||+||++|+|-+.|.++++||++..+. ++...+-......-+.++|+
T Consensus 350 --~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk-------pL~~~tgL~t~~~~tdc~FSPd 420 (641)
T KOG0772|consen 350 --TVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK-------PLNVRTGLPTPFPGTDCCFSPD 420 (641)
T ss_pred --ccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc-------chhhhcCCCccCCCCccccCCC
Confidence 01223444567887 899999999999999999999999999988643 33211222233456789999
Q ss_pred CCEEEEEe------CCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 001391 318 DSFIITAG------EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 318 ~~~l~sg~------~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd 376 (1088)
..+|++|. ..|++.+||. +-..+..+.-... .|..+.|+|.-+.|..|+.||++++|-
T Consensus 421 ~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~a-Svv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 421 DKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTA-SVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred ceEEEecccccCCCCCceEEEEeccceeeEEEecCCCc-eEEEEeecchhhheeeecCCCceEEEE
Confidence 46777775 3478999998 6677777765555 699999999999999999999999874
No 83
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=4.4e-21 Score=189.45 Aligned_cols=269 Identities=13% Similarity=0.141 Sum_probs=212.8
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEE--eeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPF--QVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~--~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
|.+.|..|+|. .+ |..|++|+ |+++.||++...+.+... .+|.+ .|-.++|.|.. || .+++
T Consensus 19 ~~~~v~Sv~wn--~~----g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~-svdql~w~~~~----~d-----~~at 82 (313)
T KOG1407|consen 19 HVQKVHSVAWN--CD----GTKLASGSFDKTVSVWNLERDRFRKELVYRGHTD-SVDQLCWDPKH----PD-----LFAT 82 (313)
T ss_pred hhhcceEEEEc--cc----CceeeecccCCceEEEEecchhhhhhhcccCCCc-chhhheeCCCC----Cc-----ceEE
Confidence 67889999999 88 89999998 899999999887555433 34554 68899998642 44 7888
Q ss_pred EECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEE
Q 001391 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1088)
Q Consensus 93 ~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~ 172 (1088)
+++|++|++||+... ++......-.+. .-+.|+| +|++++.++.|..|.+.|.++.+....
T Consensus 83 as~dk~ir~wd~r~~---------------k~~~~i~~~~en-i~i~wsp---~g~~~~~~~kdD~it~id~r~~~~~~~ 143 (313)
T KOG1407|consen 83 ASGDKTIRIWDIRSG---------------KCTARIETKGEN-INITWSP---DGEYIAVGNKDDRITFIDARTYKIVNE 143 (313)
T ss_pred ecCCceEEEEEeccC---------------cEEEEeeccCcc-eEEEEcC---CCCEEEEecCcccEEEEEecccceeeh
Confidence 899999999999853 444444333233 4578899 999999999999999999988877655
Q ss_pred eccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE
Q 001391 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1088)
Q Consensus 173 ~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1088)
.+.... ...+.++ .++.+++..+..|.|.|-.+. ..+++..+
T Consensus 144 ~~~~~e--~ne~~w~---~~nd~Fflt~GlG~v~ILsyp---------------------------------sLkpv~si 185 (313)
T KOG1407|consen 144 EQFKFE--VNEISWN---NSNDLFFLTNGLGCVEILSYP---------------------------------SLKPVQSI 185 (313)
T ss_pred hcccce--eeeeeec---CCCCEEEEecCCceEEEEecc---------------------------------cccccccc
Confidence 432211 1122222 234555555567889988877 77889999
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcE
Q 001391 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTC 330 (1088)
Q Consensus 253 ~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i 330 (1088)
+.|.....||.|+|+|+++++|+.|-.+.+||++.. -+.+ .+.-+.-+|..+.|+ +.+|++|++|..|
T Consensus 186 ~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL--------iC~R--~isRldwpVRTlSFS~dg~~lASaSEDh~I 255 (313)
T KOG1407|consen 186 KAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL--------ICER--CISRLDWPVRTLSFSHDGRMLASASEDHFI 255 (313)
T ss_pred ccCCcceEEEEECCCCceEeeccccceeeccChhHh--------hhhe--eeccccCceEEEEeccCcceeeccCccceE
Confidence 999999999999999999999999999999999874 3332 667788899999998 8999999999999
Q ss_pred EEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCC
Q 001391 331 RVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (1088)
Q Consensus 331 ~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~D 369 (1088)
-|=++ +|..+..++. .+ +...++|+|...+||-++.|
T Consensus 256 DIA~vetGd~~~eI~~-~~-~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 256 DIAEVETGDRVWEIPC-EG-PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred EeEecccCCeEEEeec-cC-CceeEEecCCCceeeEEecC
Confidence 99888 8998888863 44 68999999999999888765
No 84
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=8.2e-22 Score=198.56 Aligned_cols=295 Identities=14% Similarity=0.253 Sum_probs=226.7
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|...|.-|+.. .. ...+.+++ |.+-+||.+++|+++.++.+|.+ .|.+|+|+ +.+ ..++..+
T Consensus 147 HkDGiW~Vaa~--~t----qpi~gtASADhTA~iWs~Esg~CL~~Y~GH~G-SVNsikfh-------~s~---~L~lTaS 209 (481)
T KOG0300|consen 147 HKDGIWHVAAD--ST----QPICGTASADHTARIWSLESGACLATYTGHTG-SVNSIKFH-------NSG---LLLLTAS 209 (481)
T ss_pred cccceeeehhh--cC----CcceeecccccceeEEeeccccceeeeccccc-ceeeEEec-------ccc---ceEEEcc
Confidence 34556666665 33 67777777 79999999999999999999888 79999999 554 1556667
Q ss_pred CCCEEEEEEec----cCC--CCCCC-----------CCC--------ccccccceeeeccCCCCcEEEEEEecccCCCCE
Q 001391 95 GEKRVKLFELN----FEL--SPNSQ-----------YQP--------ETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRS 149 (1088)
Q Consensus 95 gd~~v~iw~l~----~~~--~~~~~-----------~~~--------~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~ 149 (1088)
||++..||... .+. .+... -.+ |....-.++..+.+|...|.+..|.. .++.
T Consensus 210 GD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~---gg~Q 286 (481)
T KOG0300|consen 210 GDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA---GGQQ 286 (481)
T ss_pred CCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc---Ccce
Confidence 89999999732 111 00000 001 11122346778899999999999999 9999
Q ss_pred EEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCC
Q 001391 150 LAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (1088)
Q Consensus 150 lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~ 229 (1088)
+++++.|.+..+||+++++.+..+.+|...+.. ++. .|...++++.+.|-+.++||++
T Consensus 287 ~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtH-cst---HptQrLVvTsSrDtTFRLWDFR------------------ 344 (481)
T KOG0300|consen 287 MVTASWDRTANLWDVETGEVVNILTGHDSELTH-CST---HPTQRLVVTSSRDTTFRLWDFR------------------ 344 (481)
T ss_pred eeeeeccccceeeeeccCceeccccCcchhccc-ccc---CCcceEEEEeccCceeEeccch------------------
Confidence 999999999999999999999999888765433 222 4678899999999999999998
Q ss_pred CCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCc
Q 001391 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA 309 (1088)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~ 309 (1088)
..-..+..|.||.+.|+++.|..+ ..++++++|++|++||+++.+. ++. ..-...
T Consensus 345 --------------eaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRs-------plA---TIRtdS 399 (481)
T KOG0300|consen 345 --------------EAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRS-------PLA---TIRTDS 399 (481)
T ss_pred --------------hhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccC-------cce---eeecCC
Confidence 134567889999999999999876 4589999999999999998643 221 222345
Q ss_pred ceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEEE-----cccCCCCeEEEEEcCCC--CEEEEEeCCCCEEEEEcC
Q 001391 310 RVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMI-----KEHIGRGIWRCLYDSLS--SLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 310 ~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~-----~~h~~~~V~~l~~~~dg--~~l~tg~~Dg~I~iwd~~ 378 (1088)
++..++.+ +..|+.--.+..||+||++|..+..+ ++|.. -|.+++|..+- .-|+++|.|..+.-|++.
T Consensus 400 ~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrR-MV~c~AW~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 400 PANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRR-MVTCCAWLEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred ccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccce-eeeeeeccccCcccccccccccceeeeeEec
Confidence 67777777 45777778888999999988776654 46776 59999997543 358999999999999985
No 85
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.89 E-value=1.4e-21 Score=216.72 Aligned_cols=281 Identities=15% Similarity=0.296 Sum_probs=224.5
Q ss_pred eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCC
Q 001391 55 TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH 133 (1088)
Q Consensus 55 ~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 133 (1088)
++-+.+.+|+. .|..+++. ++ ..+++ +.|+++++|+-.... ......+.+|.+
T Consensus 5 ~ls~~l~gH~~-DVr~v~~~-------~~-----~~i~s~sRd~t~~vw~~~~~~-------------~l~~~~~~~~~g 58 (745)
T KOG0301|consen 5 KLSHELEGHKS-DVRAVAVT-------DG-----VCIISGSRDGTVKVWAKKGKQ-------------YLETHAFEGPKG 58 (745)
T ss_pred eeEEEeccCcc-chheeEec-------CC-----eEEeecCCCCceeeeeccCcc-------------cccceecccCcc
Confidence 34566777665 68888876 44 44444 449999999976433 334456778899
Q ss_pred cEEE-EEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEecc
Q 001391 134 WVFD-VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (1088)
Q Consensus 134 ~I~~-v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~ 212 (1088)
.|.. +++.+ .++..|++|+.|.+|.+|...+...+..+.+|...+ .++.. ..++ .+++|+.|.++++|...
T Consensus 59 ~i~~~i~y~e--~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snV-C~ls~---~~~~-~~iSgSWD~TakvW~~~- 130 (745)
T KOG0301|consen 59 FIANSICYAE--SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNV-CSLSI---GEDG-TLISGSWDSTAKVWRIG- 130 (745)
T ss_pred eeeccceecc--ccCcceEeecccceEEEEecCCCCchhhhhccccce-eeeec---CCcC-ceEecccccceEEecch-
Confidence 9988 88876 366679999999999999999999999999887643 34432 2334 49999999999999975
Q ss_pred CccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccC
Q 001391 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292 (1088)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~ 292 (1088)
+....+.+|+..|+++++-|++ .++|||.|++|++|.-.+
T Consensus 131 ----------------------------------~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~----- 170 (745)
T KOG0301|consen 131 ----------------------------------ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGT----- 170 (745)
T ss_pred ----------------------------------hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCc-----
Confidence 3445589999999999999998 899999999999998744
Q ss_pred CCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCC
Q 001391 293 SDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSA 371 (1088)
Q Consensus 293 ~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~ 371 (1088)
.++ ++.||...|..+++- +..|++++.||.|+.|+++|+.+..+.+|.. -|+++....++..++++|.|++
T Consensus 171 -----~l~--tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrt 242 (745)
T KOG0301|consen 171 -----LLK--TFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRT 242 (745)
T ss_pred -----hhh--hhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccce-EEEEEEecCCCCeEEEecCCce
Confidence 233 889999999999998 5599999999999999999999999999998 6999998888889999999999
Q ss_pred EEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEec
Q 001391 372 IKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLC 448 (1088)
Q Consensus 372 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~ 448 (1088)
++||+.. .+.+ .+..|. -.|.+..+.++|.++++++||.++.+...
T Consensus 243 lriW~~~-e~~q------------------~I~lPt------------tsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 243 LRIWKKD-ECVQ------------------VITLPT------------TSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEEeecC-ceEE------------------EEecCc------------cceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 9999874 2111 111222 24778888889999999999999866543
No 86
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=1.7e-21 Score=196.22 Aligned_cols=270 Identities=20% Similarity=0.219 Sum_probs=206.4
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCC-CeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA-GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t-g~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
...|.+|+|| |. ...++++|+ |++||+|+++. |..+.+....+..+|.+++|+ .||. ..++.+
T Consensus 27 ~DsIS~l~FS--P~---~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Ws-------ddgs---kVf~g~ 91 (347)
T KOG0647|consen 27 EDSISALAFS--PQ---ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWS-------DDGS---KVFSGG 91 (347)
T ss_pred ccchheeEec--cc---cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEc-------cCCc---eEEeec
Confidence 4679999999 83 256777888 99999999986 666666555455589999999 7773 555555
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.|+.+++||+.... ...+..|.+.|.++.|-+. ..-.+|+||+.|++|++||.+....+.++.
T Consensus 92 ~Dk~~k~wDL~S~Q----------------~~~v~~Hd~pvkt~~wv~~-~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~ 154 (347)
T KOG0647|consen 92 CDKQAKLWDLASGQ----------------VSQVAAHDAPVKTCHWVPG-MNYQCLVTGSWDKTLKFWDTRSSNPVATLQ 154 (347)
T ss_pred cCCceEEEEccCCC----------------eeeeeecccceeEEEEecC-CCcceeEecccccceeecccCCCCeeeeee
Confidence 59999999999643 4556689999999999881 123489999999999999999999999999
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEE-Ee
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR-LV 253 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 253 (1088)
.|+++ |++.. ...+++.++.+..|.++++++.. ....+ ..
T Consensus 155 LPeRv--Ya~Dv-----~~pm~vVata~r~i~vynL~n~~--------------------------------te~k~~~S 195 (347)
T KOG0647|consen 155 LPERV--YAADV-----LYPMAVVATAERHIAVYNLENPP--------------------------------TEFKRIES 195 (347)
T ss_pred cccee--eehhc-----cCceeEEEecCCcEEEEEcCCCc--------------------------------chhhhhcC
Confidence 99875 45432 34578889999999999997211 11111 11
Q ss_pred CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccC---------cceEEEEEC--CCEEE
Q 001391 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN---------ARVWDCCLT--DSFII 322 (1088)
Q Consensus 254 gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~---------~~I~~v~~~--~~~l~ 322 (1088)
.-+-.+++|+..+|.+..+.|+-.|.+-+..+..+..... +++..|. ..|.+++|+ .+.|+
T Consensus 196 pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~n--------FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlv 267 (347)
T KOG0647|consen 196 PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDN--------FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLV 267 (347)
T ss_pred cccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCc--------eeEEEeccCCCCCCceEEecceEeecccceEE
Confidence 2334688999999998889999999999999988532111 2444443 247788998 47899
Q ss_pred EEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEE
Q 001391 323 TAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366 (1088)
Q Consensus 323 sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg 366 (1088)
|+|.||++.+||- ....+.....|.. +|++.+|+.+|.+++-+
T Consensus 268 TaGsDGtf~FWDkdar~kLk~s~~~~q-pItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 268 TAGSDGTFSFWDKDARTKLKTSETHPQ-PITCCSFNRNGSIFAYA 311 (347)
T ss_pred EecCCceEEEecchhhhhhhccCcCCC-ccceeEecCCCCEEEEE
Confidence 9999999999999 4556677777887 89999999999876543
No 87
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3e-21 Score=215.64 Aligned_cols=264 Identities=15% Similarity=0.232 Sum_probs=214.8
Q ss_pred CCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCC
Q 001391 34 SLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNS 112 (1088)
Q Consensus 34 ~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~ 112 (1088)
+...||.|.+..|++|+..+++....+..+ ...|..+.|+ ++| ..|++ ..++.|.|||...
T Consensus 187 s~n~laValg~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws-------~~G----~~LavG~~~g~v~iwD~~~------ 248 (484)
T KOG0305|consen 187 SANVLAVALGQSVYLWSASSGSVTELCSFG-EELVTSVKWS-------PDG----SHLAVGTSDGTVQIWDVKE------ 248 (484)
T ss_pred cCCeEEEEecceEEEEecCCCceEEeEecC-CCceEEEEEC-------CCC----CEEEEeecCCeEEEEehhh------
Confidence 357999999999999999999866555543 4579999999 888 45555 5599999999985
Q ss_pred CCCCccccccceeeeccC-CCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEE-eccCCceeEEEEeeecCC
Q 001391 113 QYQPETCVNLSLVQSLPR-LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE-VHSPERCLLYSMKLWGDN 190 (1088)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~-h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~-~~~~~~~~~~s~~~~~~s 190 (1088)
.+.+..+.+ |...|-+++|. +..+.+|+.|+.|..+|+...+.... +.+|.. .+..+.+ +
T Consensus 249 ---------~k~~~~~~~~h~~rvg~laW~-----~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~q-eVCgLkw---s 310 (484)
T KOG0305|consen 249 ---------QKKTRTLRGSHASRVGSLAWN-----SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQ-EVCGLKW---S 310 (484)
T ss_pred ---------ccccccccCCcCceeEEEecc-----CceEEEecCCCcEEEEEEecchhhhhhhhcccc-eeeeeEE---C
Confidence 456667777 99999999995 47899999999999999998776555 444433 3334444 7
Q ss_pred CCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcC-CCC
Q 001391 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGS 269 (1088)
Q Consensus 191 ~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp-~g~ 269 (1088)
+++.++|+|+.|+.+.|||.. ...+...+..|...|.+++|+| ...
T Consensus 311 ~d~~~lASGgnDN~~~Iwd~~---------------------------------~~~p~~~~~~H~aAVKA~awcP~q~~ 357 (484)
T KOG0305|consen 311 PDGNQLASGGNDNVVFIWDGL---------------------------------SPEPKFTFTEHTAAVKALAWCPWQSG 357 (484)
T ss_pred CCCCeeccCCCccceEeccCC---------------------------------CccccEEEeccceeeeEeeeCCCccC
Confidence 899999999999999999997 6778888999999999999999 456
Q ss_pred EEEEE--ECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC---CEEEE-EeCCCcEEEEcC-CCceeEE
Q 001391 270 KLVSV--SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIIT-AGEDCTCRVWGS-DGKQLKM 342 (1088)
Q Consensus 270 ~l~s~--s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~---~~l~s-g~~Dg~i~vWd~-~~~~~~~ 342 (1088)
.||+| +.|+.|++||..++.. + ....-...|.++.|+. .++.+ |..+..|.||+. +-+.+..
T Consensus 358 lLAsGGGs~D~~i~fwn~~~g~~--------i---~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~ 426 (484)
T KOG0305|consen 358 LLATGGGSADRCIKFWNTNTGAR--------I---DSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAE 426 (484)
T ss_pred ceEEcCCCcccEEEEEEcCCCcE--------e---cccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeee
Confidence 78885 4699999999998643 2 2334457899999993 23333 345678999999 7888999
Q ss_pred EcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 343 IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 343 ~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
+.+|..+ |..++++|||..+++|+.|.++++|++-
T Consensus 427 l~gH~~R-Vl~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 427 LLGHTSR-VLYLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred ecCCcce-eEEEEECCCCCEEEEecccCcEEecccc
Confidence 9999995 9999999999999999999999999983
No 88
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.89 E-value=2.5e-22 Score=196.55 Aligned_cols=277 Identities=19% Similarity=0.261 Sum_probs=214.7
Q ss_pred eeeeeEEEEEec-cCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE
Q 001391 16 YLGEISALCFVH-LPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1088)
Q Consensus 16 ~~~~V~~v~fs~-~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~ 93 (1088)
|..||-.|+||. .|+ |-+|++++ |+.=-+-+-+||.-+.+|.+|++ .|++.... .+. .+.|+
T Consensus 13 htrpvvdl~~s~itp~----g~flisa~kd~~pmlr~g~tgdwigtfeghkg-avw~~~l~-------~na----~~aas 76 (334)
T KOG0278|consen 13 HTRPVVDLAFSPITPD----GYFLISASKDGKPMLRNGDTGDWIGTFEGHKG-AVWSATLN-------KNA----TRAAS 76 (334)
T ss_pred CCcceeEEeccCCCCC----ceEEEEeccCCCchhccCCCCCcEEeeeccCc-ceeeeecC-------chh----hhhhh
Confidence 678999999992 234 66777777 76666667889999999999998 59988887 443 33333
Q ss_pred -ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce-EE
Q 001391 94 -FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-IL 171 (1088)
Q Consensus 94 -~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~-~~ 171 (1088)
+.|-+.+|||.-++. .+.++ .|..-|.+++|+. |.++|+||+.+..+||+|++..+. ..
T Consensus 77 aaadftakvw~a~tgd---------------elhsf-~hkhivk~~af~~---ds~~lltgg~ekllrvfdln~p~App~ 137 (334)
T KOG0278|consen 77 AAADFTAKVWDAVTGD---------------ELHSF-EHKHIVKAVAFSQ---DSNYLLTGGQEKLLRVFDLNRPKAPPK 137 (334)
T ss_pred hcccchhhhhhhhhhh---------------hhhhh-hhhheeeeEEecc---cchhhhccchHHHhhhhhccCCCCCch
Confidence 348999999977543 33333 5888999999999 999999999999999999987654 34
Q ss_pred EeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEE
Q 001391 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (1088)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1088)
++.++.+.+- .+.++ .....|++.+.|++|++||.+ ++..++.
T Consensus 138 E~~ghtg~Ir-~v~wc---~eD~~iLSSadd~tVRLWD~r---------------------------------Tgt~v~s 180 (334)
T KOG0278|consen 138 EISGHTGGIR-TVLWC---HEDKCILSSADDKTVRLWDHR---------------------------------TGTEVQS 180 (334)
T ss_pred hhcCCCCcce-eEEEe---ccCceEEeeccCCceEEEEec---------------------------------cCcEEEE
Confidence 4544444322 22221 346688888999999999999 6666666
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCc
Q 001391 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCT 329 (1088)
Q Consensus 252 ~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~ 329 (1088)
+. -...|.++..+++|++|.++ .-+.|.+||..+- ..++ -..-+..|.+...+ ...++.|++|..
T Consensus 181 L~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf--------~~lK---s~k~P~nV~SASL~P~k~~fVaGged~~ 247 (334)
T KOG0278|consen 181 LE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSF--------GLLK---SYKMPCNVESASLHPKKEFFVAGGEDFK 247 (334)
T ss_pred Ee-cCCCCcceeeccCCCEEEEe-cCceeEEeccccc--------ccee---eccCccccccccccCCCceEEecCcceE
Confidence 65 46789999999999876665 4568999999884 3332 22334557777777 368999999999
Q ss_pred EEEEcC-CCceeEEE-cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 330 CRVWGS-DGKQLKMI-KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 330 i~vWd~-~~~~~~~~-~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
++.||. +|..+..+ ++|.+ +|.++.|+|+|..-++|+.||+|++|...
T Consensus 248 ~~kfDy~TgeEi~~~nkgh~g-pVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 248 VYKFDYNTGEEIGSYNKGHFG-PVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred EEEEeccCCceeeecccCCCC-ceEEEEECCCCceeeccCCCceEEEEEec
Confidence 999999 88888885 89999 89999999999999999999999999873
No 89
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.89 E-value=2.1e-21 Score=207.91 Aligned_cols=309 Identities=14% Similarity=0.216 Sum_probs=209.8
Q ss_pred ccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc----eEEEeccCCceeEEEEeeecCCCCCcEE
Q 001391 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS----IILEVHSPERCLLYSMKLWGDNLEALRI 196 (1088)
Q Consensus 121 ~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~----~~~~~~~~~~~~~~s~~~~~~s~~~~~l 196 (1088)
.......+++|+..|.++++.| .|..+++|+-|.+|++||+.... ....+...+...+.++.+ ++.+..|
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp---~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~y---s~Tg~~i 229 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDP---SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQY---SVTGDQI 229 (641)
T ss_pred CccceEeccCCceEEEEeeecC---CCceeeeccccceEEEEecccccccchhhhccCcccccccceeee---cCCCCeE
Confidence 4556778899999999999999 99999999999999999997532 234444444444556665 5778888
Q ss_pred EEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCC-CEEEEEE
Q 001391 197 ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVS 275 (1088)
Q Consensus 197 ~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g-~~l~s~s 275 (1088)
++.+....++|+|-...+... ......--.-+...+||...+++.+|+|+. ..++|++
T Consensus 230 Lvvsg~aqakl~DRdG~~~~e---------------------~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s 288 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDRDGFEIVE---------------------FSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCS 288 (641)
T ss_pred EEEecCcceeEEccCCceeee---------------------eeccchhhhhhhccCCceeeeeccccccCcccceEEec
Confidence 887778899999976211111 000000112344567999999999999976 5789999
Q ss_pred CCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCC---cee-EEEcccCC-
Q 001391 276 DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDG---KQL-KMIKEHIG- 348 (1088)
Q Consensus 276 ~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~---~~~-~~~~~h~~- 348 (1088)
.|+++||||+...+. ..+.+++....+..-.++.|+|+ +.+|+.|+.||.|.+|+..+ ++. ..-..|..
T Consensus 289 ~DgtlRiWdv~~~k~----q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g 364 (641)
T KOG0772|consen 289 YDGTLRIWDVNNTKS----QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPG 364 (641)
T ss_pred CCCcEEEEecCCchh----heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCC
Confidence 999999999987543 13445433344555578999998 68899999999999999732 222 22244543
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC--CCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEE
Q 001391 349 RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA--FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLH 426 (1088)
Q Consensus 349 ~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 426 (1088)
..|++|.|++||++|++-|.|+++++||++. +.+....+. ++ ...-+..+
T Consensus 365 ~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL-----------------~t-----------~~~~tdc~ 416 (641)
T KOG0772|consen 365 QDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGL-----------------PT-----------PFPGTDCC 416 (641)
T ss_pred CceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCC-----------------Cc-----------cCCCCccc
Confidence 3599999999999999999999999999964 222221111 11 12346788
Q ss_pred eccCCeEEEEec-------CCeEEEEEeccCCcceeEEeeeec-CCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEE
Q 001391 427 LTSEDTLYIATN-------HGYLYHTKLCDMDSVNWNKILQVS-EGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTI 498 (1088)
Q Consensus 427 ~s~~~~ll~~t~-------~g~i~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~i 498 (1088)
|+|+.++++++. .|.++.+ +..+ +..+.... ....+....+++ .-+.|.+|+.||.+++
T Consensus 417 FSPd~kli~TGtS~~~~~~~g~L~f~---d~~t--~d~v~ki~i~~aSvv~~~Whp--------kLNQi~~gsgdG~~~v 483 (641)
T KOG0772|consen 417 FSPDDKLILTGTSAPNGMTAGTLFFF---DRMT--LDTVYKIDISTASVVRCLWHP--------KLNQIFAGSGDGTAHV 483 (641)
T ss_pred cCCCceEEEecccccCCCCCceEEEE---eccc--eeeEEEecCCCceEEEEeecc--------hhhheeeecCCCceEE
Confidence 999988877642 2445533 3222 22222222 123344444433 3378899999999999
Q ss_pred EEE
Q 001391 499 VRV 501 (1088)
Q Consensus 499 w~~ 501 (1088)
|--
T Consensus 484 yYd 486 (641)
T KOG0772|consen 484 YYD 486 (641)
T ss_pred EEC
Confidence 743
No 90
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=3.1e-21 Score=194.44 Aligned_cols=319 Identities=17% Similarity=0.285 Sum_probs=231.6
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEec
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~ 201 (1088)
+++++.+.||.+.||.++... ....+.+++.|.+.+||.++++.++.++.+|.++ +.++.| .+.+.++++++.
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~---tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GS-VNsikf---h~s~~L~lTaSG 210 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADS---TQPICGTASADHTARIWSLESGACLATYTGHTGS-VNSIKF---HNSGLLLLTASG 210 (481)
T ss_pred Eeehhhhcccccceeeehhhc---CCcceeecccccceeEEeeccccceeeecccccc-eeeEEe---ccccceEEEccC
Confidence 567788899999999999977 7779999999999999999999999999988775 556666 467899999999
Q ss_pred CCeEEEEEeccCccccCCC--------CCCCcc------CCC-CCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcC
Q 001391 202 YNEIIVWKVDWEHVAPLLN--------SPEGNH------AHG-SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS 266 (1088)
Q Consensus 202 dg~I~vwd~~~~~~~~~~~--------~~~~~s------~~~-~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp 266 (1088)
|++..||....+=-.+... ....++ .++ ..++..++ ..++..+.+|.+.|.+..|..
T Consensus 211 D~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ti--------RvPl~~ltgH~~vV~a~dWL~ 282 (481)
T KOG0300|consen 211 DETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTI--------RVPLMRLTGHRAVVSACDWLA 282 (481)
T ss_pred CcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCcee--------eeeeeeeeccccceEehhhhc
Confidence 9999999844211111110 000011 000 01122222 346788999999999999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCC--CceeEE
Q 001391 267 CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSD--GKQLKM 342 (1088)
Q Consensus 267 ~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~--~~~~~~ 342 (1088)
.|+.+++++.|++..+||++++ +.+. .+.||....+.++-+ ..++++.+.|.+.|+||+. -..+..
T Consensus 283 gg~Q~vTaSWDRTAnlwDVEtg--------e~v~--~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~V 352 (481)
T KOG0300|consen 283 GGQQMVTASWDRTANLWDVETG--------EVVN--ILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAV 352 (481)
T ss_pred CcceeeeeeccccceeeeeccC--------ceec--cccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeee
Confidence 9999999999999999999996 4554 889999999988887 4689999999999999993 355778
Q ss_pred EcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCce
Q 001391 343 IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYV 422 (1088)
Q Consensus 343 ~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 422 (1088)
|++|.. .|++..|..+. .+++|+.|.+|++||+++-. ..+-.+. .+.++
T Consensus 353 FQGHtd-tVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMR----------------splATIR-------------tdS~~ 401 (481)
T KOG0300|consen 353 FQGHTD-TVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMR----------------SPLATIR-------------TDSPA 401 (481)
T ss_pred eccccc-ceeEEEEecCC-ceeecCCCceEEEeeecccc----------------Ccceeee-------------cCCcc
Confidence 999998 79999998775 58999999999999995421 0011111 12356
Q ss_pred EEEEeccCCeEEEEecCC-eEEEEEeccCCcceeE-EeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEE
Q 001391 423 RCLHLTSEDTLYIATNHG-YLYHTKLCDMDSVNWN-KILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (1088)
Q Consensus 423 ~~l~~s~~~~ll~~t~~g-~i~~~~~~~~~~~~~~-~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~ 500 (1088)
+.++.+..+.+++.-.++ ++..+++......+.. ...++| .+-+.|.++...++ -.-+++++-|..+.-|+
T Consensus 402 NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgH-rRMV~c~AW~eehp------~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 402 NRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGH-RRMVTCCAWLEEHP------ACNLFTCGFDRMVAGWK 474 (481)
T ss_pred ceeEeecCCceEEeccCCceEEEEecCCCccccCCccccccc-ceeeeeeeccccCc------ccccccccccceeeeeE
Confidence 777777766666665444 4555555443322211 122333 55677777765541 14578888899999998
Q ss_pred EcC
Q 001391 501 VVG 503 (1088)
Q Consensus 501 ~~~ 503 (1088)
++.
T Consensus 475 in~ 477 (481)
T KOG0300|consen 475 INT 477 (481)
T ss_pred ecc
Confidence 864
No 91
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.89 E-value=2.1e-19 Score=196.03 Aligned_cols=223 Identities=17% Similarity=0.260 Sum_probs=161.2
Q ss_pred CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceE-----E
Q 001391 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII-----L 171 (1088)
Q Consensus 97 ~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~-----~ 171 (1088)
+.+-|.-+.... .+.+.+..+.+|.+.|+++.|+|. +..+||||+.|..|+||.+..+... .
T Consensus 55 ~~lgvlPl~~~G-----------r~~r~i~~l~~H~d~VtDl~FspF--~D~LLAT~S~D~~VKiW~lp~g~~q~LSape 121 (1012)
T KOG1445|consen 55 GKLGVLPLTAKG-----------RRTRDIGILAAHGDQVTDLGFSPF--ADELLATCSRDEPVKIWKLPRGHSQKLSAPE 121 (1012)
T ss_pred ceEEEEeccccC-----------ccccccceeecccceeeccCcccc--chhhhhcccCCCeeEEEecCCCcccccCCcc
Confidence 466666665322 124567788899999999999995 6679999999999999999844221 1
Q ss_pred EeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEE
Q 001391 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (1088)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1088)
...++..-.+-.+.||+.. |+ ++ ..+.-|.++|||+. +.+.+..
T Consensus 122 ~~~g~~~~~vE~l~fHpTa-Dg-il-~s~a~g~v~i~D~s---------------------------------tqk~~~e 165 (1012)
T KOG1445|consen 122 IDVGGGNVIVECLRFHPTA-DG-IL-ASGAHGSVYITDIS---------------------------------TQKTAVE 165 (1012)
T ss_pred eeecCCceEEEEeecccCc-Cc-eE-EeccCceEEEEEcc---------------------------------cCceeec
Confidence 1224555556667776432 33 33 44467999999998 7888999
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcc-eEEEEECCC--EEEEEeCC-
Q 001391 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR-VWDCCLTDS--FIITAGED- 327 (1088)
Q Consensus 252 ~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~-I~~v~~~~~--~l~sg~~D- 327 (1088)
+.+|.+.|.+..|+.||+.+++++.|+.|+|||.+.. .+.++ ...+|.+. =..+.|.|+ .|++.+.+
T Consensus 166 l~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~-------~~piQ--~te~H~~~rdsRv~w~Gn~~rlisTGF~~ 236 (1012)
T KOG1445|consen 166 LSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRAS-------MEPIQ--TTEGHGGMRDSRVLWAGNWERLISTGFTT 236 (1012)
T ss_pred ccCCchhhhccccccCCceEeeecCCcceEEeCCccC-------CCccc--cccccccchhheeeeccchhhhhhcccch
Confidence 9999999999999999999999999999999999875 34554 55777653 345677764 67766655
Q ss_pred ---CcEEEEcC--CCceeEEEcccCCCCeEEEEEcCCCCEEEEEe-CCCCEEEEEc
Q 001391 328 ---CTCRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG-FDSAIKVHQF 377 (1088)
Q Consensus 328 ---g~i~vWd~--~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~-~Dg~I~iwd~ 377 (1088)
..+++||. =+.+++++.-....+|.--.|.||.++|+-+| .+.++..+.+
T Consensus 237 ~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~ 292 (1012)
T KOG1445|consen 237 KRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEM 292 (1012)
T ss_pred hhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEe
Confidence 46899998 34556655443333577777899988665554 4667777666
No 92
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=7.1e-21 Score=202.20 Aligned_cols=288 Identities=13% Similarity=0.176 Sum_probs=217.5
Q ss_pred EEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCcc------ccccceeeeccCCC
Q 001391 59 PFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPET------CVNLSLVQSLPRLS 132 (1088)
Q Consensus 59 ~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~------~~~~~~~~~l~~h~ 132 (1088)
.+..|+- .|.+++++ ||.+ +.+.++.+++|.=|++.++...... .|.. ....+.-. ++|.
T Consensus 137 ~~~~H~~-s~~~vals-------~d~~---~~fsask~g~i~kw~v~tgk~~~~i-~~~~ev~k~~~~~~k~~r--~~h~ 202 (479)
T KOG0299|consen 137 VIGKHQL-SVTSVALS-------PDDK---RVFSASKDGTILKWDVLTGKKDRYI-IERDEVLKSHGNPLKESR--KGHV 202 (479)
T ss_pred eeccccC-cceEEEee-------cccc---ceeecCCCcceeeeehhcCcccccc-cccchhhhhccCCCCccc--cccc
Confidence 3444444 79999999 6763 6777777999999998865421111 1110 00112221 4899
Q ss_pred CcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEecc
Q 001391 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~ 212 (1088)
..|.++++++ |+++||+|+.|..|.||+..+.+.+..+.+|... +.+++|. .....+++++.|..|++|+++
T Consensus 203 keil~~avS~---Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~-V~~L~fr---~gt~~lys~s~Drsvkvw~~~- 274 (479)
T KOG0299|consen 203 KEILTLAVSS---DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGA-VSSLAFR---KGTSELYSASADRSVKVWSID- 274 (479)
T ss_pred ceeEEEEEcC---CCcEEEecCCCceEEEecCcccchhhcccccccc-eeeeeee---cCccceeeeecCCceEEEehh-
Confidence 9999999999 9999999999999999999999999888776554 5577763 345678999999999999998
Q ss_pred CccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccC
Q 001391 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292 (1088)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~ 292 (1088)
....+.++.||.+.|.+|....-++.+..|+.|+++++|++.....
T Consensus 275 --------------------------------~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-- 320 (479)
T KOG0299|consen 275 --------------------------------QLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ-- 320 (479)
T ss_pred --------------------------------HhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccce--
Confidence 6677888899999999999988888777788999999999965322
Q ss_pred CCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEcc-cCC----------CCeEEEEEcCC
Q 001391 293 SDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKE-HIG----------RGIWRCLYDSL 359 (1088)
Q Consensus 293 ~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~-h~~----------~~V~~l~~~~d 359 (1088)
..+.+|...+-|++|- ..++++|+.||.|.+|++ ..+++.+.+. |.- ..|++++..|.
T Consensus 321 ---------lifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~ 391 (479)
T KOG0299|consen 321 ---------LIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPG 391 (479)
T ss_pred ---------eeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEeccc
Confidence 3788999999999997 789999999999999999 6666655432 211 14889999999
Q ss_pred CCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCe-EEEEe
Q 001391 360 SSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT-LYIAT 437 (1088)
Q Consensus 360 g~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~-ll~~t 437 (1088)
.+++++|+.+|.|++|.+..... .-..++.+. -.+.|++++|+++|+ ++++.
T Consensus 392 sdL~asGS~~G~vrLW~i~~g~r-------------~i~~l~~ls-------------~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 392 SDLLASGSWSGCVRLWKIEDGLR-------------AINLLYSLS-------------LVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred CceEEecCCCCceEEEEecCCcc-------------ccceeeecc-------------cccEEEEEEEccCCCEEEEec
Confidence 99999999999999999853210 001111211 135799999999997 44443
No 93
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.89 E-value=2.4e-22 Score=202.77 Aligned_cols=274 Identities=15% Similarity=0.219 Sum_probs=222.4
Q ss_pred eeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEe--------eeCCcceEEEEecccccccCCCccceee
Q 001391 19 EISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQ--------VFHGIRLHGISCNFINCTEGSVSTRVTF 89 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~--------~~~~~~V~~i~~s~~~~~~~~d~~~~~~ 89 (1088)
-+-|..|| || +.||++|+ ||.|.|||..+|++-..++ -++ ..|.++.|| .|. .
T Consensus 215 h~EcA~FS--PD----gqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd-~aVlci~FS-------RDs----E 276 (508)
T KOG0275|consen 215 HVECARFS--PD----GQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMD-DAVLCISFS-------RDS----E 276 (508)
T ss_pred chhheeeC--CC----CceEeeccccceeeeehhccchhhhhhhhhhhcceeecc-cceEEEeec-------ccH----H
Confidence 37799999 99 99999999 8999999999997654332 223 479999999 665 6
Q ss_pred EEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeecc-CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC
Q 001391 90 EVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP-RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (1088)
Q Consensus 90 ~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~ 167 (1088)
.+|++. ||.|++|.+.+ +.+++.+. .|+..|+|+.|+. |+..+.+++.|.++|+--+.+|
T Consensus 277 MlAsGsqDGkIKvWri~t---------------G~ClRrFdrAHtkGvt~l~FSr---D~SqiLS~sfD~tvRiHGlKSG 338 (508)
T KOG0275|consen 277 MLASGSQDGKIKVWRIET---------------GQCLRRFDRAHTKGVTCLSFSR---DNSQILSASFDQTVRIHGLKSG 338 (508)
T ss_pred HhhccCcCCcEEEEEEec---------------chHHHHhhhhhccCeeEEEEcc---CcchhhcccccceEEEeccccc
Confidence 666655 99999999996 45666665 8999999999999 9999999999999999999999
Q ss_pred ceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccccee
Q 001391 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1088)
Q Consensus 168 ~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 247 (1088)
++++++.+|.. .+..+.| .++|..+++++.||+|++|+.. +..
T Consensus 339 K~LKEfrGHsS-yvn~a~f---t~dG~~iisaSsDgtvkvW~~K---------------------------------tte 381 (508)
T KOG0275|consen 339 KCLKEFRGHSS-YVNEATF---TDDGHHIISASSDGTVKVWHGK---------------------------------TTE 381 (508)
T ss_pred hhHHHhcCccc-cccceEE---cCCCCeEEEecCCccEEEecCc---------------------------------chh
Confidence 99999987754 3334444 6899999999999999999998 555
Q ss_pred eeEEEe--CCCCCEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeec--cCcceEEEEEC--CCE
Q 001391 248 NLFRLV--GHEGSIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG--HNARVWDCCLT--DSF 320 (1088)
Q Consensus 248 ~~~~~~--gh~~~V~~v~~sp~-g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~--h~~~I~~v~~~--~~~ 320 (1088)
++.+++ +..-+|..+-.-|. ...++.|....+|.+-++.. +.++. ...| ..+...+++.+ |..
T Consensus 382 C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG---------QvVrs-fsSGkREgGdFi~~~lSpkGew 451 (508)
T KOG0275|consen 382 CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG---------QVVRS-FSSGKREGGDFINAILSPKGEW 451 (508)
T ss_pred hhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc---------eEEee-eccCCccCCceEEEEecCCCcE
Confidence 555554 34567888887774 46889999999999999876 33331 1112 22344455565 789
Q ss_pred EEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 001391 321 IITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 321 l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd 376 (1088)
++..++|+.++.|.. .|+...++.-|... |-.++-+|..++|++-+.||.+++|.
T Consensus 452 iYcigED~vlYCF~~~sG~LE~tl~VhEkd-vIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 452 IYCIGEDGVLYCFSVLSGKLERTLPVHEKD-VIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEEccCcEEEEEEeecCceeeeeeccccc-ccccccCcccchhhhhcccchhhhcC
Confidence 999999999999998 89999999999884 88999999999999999999999995
No 94
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=5.5e-22 Score=204.08 Aligned_cols=290 Identities=16% Similarity=0.166 Sum_probs=219.4
Q ss_pred eeeEEEeCCCCCEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEe
Q 001391 247 VNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAG 325 (1088)
Q Consensus 247 ~~~~~~~gh~~~V~~v~~sp~g-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~ 325 (1088)
..+..+.||.+.|.+++=+|.. ..++||+.||.|+|||+.... ++. .+..|.+.|..+++....+++++
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~--------~~~--~f~AH~G~V~Gi~v~~~~~~tvg 126 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE--------CIR--TFKAHEGLVRGICVTQTSFFTVG 126 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhh--------hhh--eeecccCceeeEEecccceEEec
Confidence 3456778999999999999987 789999999999999999853 343 88999999999999988999999
Q ss_pred CCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeee
Q 001391 326 EDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKI 405 (1088)
Q Consensus 326 ~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1088)
.|.+|+.|.+++.++.++.+.. .+..+.-+..+..++|+|.+ |.|||....
T Consensus 127 dDKtvK~wk~~~~p~~tilg~s--~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~------------------------- 177 (433)
T KOG0268|consen 127 DDKTVKQWKIDGPPLHTILGKS--VYLGIDHHRKNSVFATCGEQ--IDIWDEQRD------------------------- 177 (433)
T ss_pred CCcceeeeeccCCcceeeeccc--cccccccccccccccccCce--eeecccccC-------------------------
Confidence 9999999999888888887655 37788877777889999874 899998421
Q ss_pred CCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCC
Q 001391 406 PNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDD 485 (1088)
Q Consensus 406 ~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~ 485 (1088)
.++..+.|--|. |.++.+.+. ...
T Consensus 178 --------------~Pv~smswG~Dt-----------------------------------i~svkfNpv-------ETs 201 (433)
T KOG0268|consen 178 --------------NPVSSMSWGADS-----------------------------------ISSVKFNPV-------ETS 201 (433)
T ss_pred --------------CccceeecCCCc-----------------------------------eeEEecCCC-------cch
Confidence 123333332221 111111111 126
Q ss_pred eEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCc
Q 001391 486 WVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSK 565 (1088)
Q Consensus 486 ~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~ 565 (1088)
+|++++.|+.|.+||+..+....+..+.. .. . -.|++|++-.+++++.|-.++.+|++.-.
T Consensus 202 ILas~~sDrsIvLyD~R~~~Pl~KVi~~m--RT-------N-~IswnPeafnF~~a~ED~nlY~~DmR~l~--------- 262 (433)
T KOG0268|consen 202 ILASCASDRSIVLYDLRQASPLKKVILTM--RT-------N-TICWNPEAFNFVAANEDHNLYTYDMRNLS--------- 262 (433)
T ss_pred heeeeccCCceEEEecccCCccceeeeec--cc-------c-ceecCccccceeeccccccceehhhhhhc---------
Confidence 78999999999999998877665444322 10 1 15788976668889999999999998432
Q ss_pred ccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeecccccccceeEEEE
Q 001391 566 TNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSV 645 (1088)
Q Consensus 566 ~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~ 645 (1088)
-|...-.+|...|+.++|||.|+-+++||.|.+|+||.+..... +. .-+.+ ....|.+|.|
T Consensus 263 -----~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S--------Rd---iYhtk---RMq~V~~Vk~ 323 (433)
T KOG0268|consen 263 -----RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS--------RD---IYHTK---RMQHVFCVKY 323 (433)
T ss_pred -----ccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcc--------hh---hhhHh---hhheeeEEEE
Confidence 12222348999999999999999999999999999999886422 01 00111 1246999999
Q ss_pred EeccCCceEEEEecCCCeEEEEEeecC
Q 001391 646 AKLRSNQTEIRSTGGDGCICYLEYDKD 672 (1088)
Q Consensus 646 ~~~~~~~~~l~t~g~Dg~i~iw~~~~~ 672 (1088)
+ .|..|++|||.||.||+|.....
T Consensus 324 S---~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 324 S---MDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred e---ccccEEEecCCCcceeeeecchh
Confidence 9 78899999999999999997664
No 95
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.3e-21 Score=195.33 Aligned_cols=236 Identities=16% Similarity=0.244 Sum_probs=193.7
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.++|+||+.+ ++|+|+|+ |.+|+|||+.+...+..+..|.+ .|.++.|.+. -. ...+|+++
T Consensus 42 H~~sitavAVs--------~~~~aSGssDetI~IYDm~k~~qlg~ll~Hag-sitaL~F~~~------~S--~shLlS~s 104 (362)
T KOG0294|consen 42 HAGSITALAVS--------GPYVASGSSDETIHIYDMRKRKQLGILLSHAG-SITALKFYPP------LS--KSHLLSGS 104 (362)
T ss_pred cccceeEEEec--------ceeEeccCCCCcEEEEeccchhhhcceecccc-ceEEEEecCC------cc--hhheeeec
Confidence 88999999999 89999998 89999999999999999998877 7999999842 11 12678888
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.||.|.+|+... +.++..+++|.+.|+.++++| .+++-++.+.|+.++.||+.+|+.-..+
T Consensus 105 dDG~i~iw~~~~---------------W~~~~slK~H~~~Vt~lsiHP---S~KLALsVg~D~~lr~WNLV~Gr~a~v~- 165 (362)
T KOG0294|consen 105 DDGHIIIWRVGS---------------WELLKSLKAHKGQVTDLSIHP---SGKLALSVGGDQVLRTWNLVRGRVAFVL- 165 (362)
T ss_pred CCCcEEEEEcCC---------------eEEeeeecccccccceeEecC---CCceEEEEcCCceeeeehhhcCccceee-
Confidence 899999999874 789999999999999999999 9999888999999999999776522211
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
++.
T Consensus 166 ----------------------------------~L~------------------------------------------- 168 (362)
T KOG0294|consen 166 ----------------------------------NLK------------------------------------------- 168 (362)
T ss_pred ----------------------------------ccC-------------------------------------------
Confidence 011
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEE
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVW 333 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vW 333 (1088)
|.. ..|.|+|.|.+++.++.+ .|-+|.+.+... + .....+.++.++.|. +..+++|+.|+.|++|
T Consensus 169 ~~a--t~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v--------~---~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~ 234 (362)
T KOG0294|consen 169 NKA--TLVSWSPQGDHFVVSGRN-KIDIYQLDNASV--------F---REIENPKRILCATFLDGSELLVGGDNEWISLK 234 (362)
T ss_pred Ccc--eeeEEcCCCCEEEEEecc-EEEEEecccHhH--------h---hhhhccccceeeeecCCceEEEecCCceEEEe
Confidence 111 127899999988888776 588999888533 2 222233678888887 7899999999999999
Q ss_pred cC-CCceeEEEcccCCCCeEEEEE--cCCCCEEEEEeCCCCEEEEEcCC
Q 001391 334 GS-DGKQLKMIKEHIGRGIWRCLY--DSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 334 d~-~~~~~~~~~~h~~~~V~~l~~--~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
|. +..++..+.+|..+ |-.+.+ .|++.+|+|++.||.|++||++.
T Consensus 235 D~ds~~~~~~~~AH~~R-VK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 235 DTDSDTPLTEFLAHENR-VKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred ccCCCccceeeecchhh-eeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 99 58889999999994 999884 67788999999999999999954
No 96
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=2.6e-22 Score=206.41 Aligned_cols=278 Identities=17% Similarity=0.256 Sum_probs=213.4
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|...|.|++=+ |. .-..+|+|+ ||.|+|||+++-.++.+|+.|.+ -|.+|++. .. ..+.++
T Consensus 65 HrdGV~~lakh--p~---~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G-~V~Gi~v~-------~~-----~~~tvg 126 (433)
T KOG0268|consen 65 HRDGVSCLAKH--PN---KLSTVASGSCDGEVKIWNLSQRECIRTFKAHEG-LVRGICVT-------QT-----SFFTVG 126 (433)
T ss_pred cccccchhhcC--cc---hhhhhhccccCceEEEEehhhhhhhheeecccC-ceeeEEec-------cc-----ceEEec
Confidence 45668899888 86 226788888 89999999999999999999888 69999998 32 788888
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.|++|+.|.++. .+.+++.+ ...+..+.-+. .+..+||+|.+ |.|||......+.++.
T Consensus 127 dDKtvK~wk~~~----------------~p~~tilg-~s~~~gIdh~~---~~~~FaTcGe~--i~IWD~~R~~Pv~sms 184 (433)
T KOG0268|consen 127 DDKTVKQWKIDG----------------PPLHTILG-KSVYLGIDHHR---KNSVFATCGEQ--IDIWDEQRDNPVSSMS 184 (433)
T ss_pred CCcceeeeeccC----------------Ccceeeec-ccccccccccc---ccccccccCce--eeecccccCCccceee
Confidence 899999999883 23333332 23456666666 67788998854 9999998888887776
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
-.... +.++.+. ......|++++.|+.|.+||++ ...+++...
T Consensus 185 wG~Dt-i~svkfN--pvETsILas~~sDrsIvLyD~R---------------------------------~~~Pl~KVi- 227 (433)
T KOG0268|consen 185 WGADS-ISSVKFN--PVETSILASCASDRSIVLYDLR---------------------------------QASPLKKVI- 227 (433)
T ss_pred cCCCc-eeEEecC--CCcchheeeeccCCceEEEecc---------------------------------cCCccceee-
Confidence 44432 3345542 2345678888899999999999 444444332
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEE
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRV 332 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~v 332 (1088)
-+-.-+.|+|+|++-.++++++|..++.+|++... +++. ...+|...|.++.|+ |.-+++|+.|.+|||
T Consensus 228 ~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~-------~p~~--v~~dhvsAV~dVdfsptG~EfvsgsyDksIRI 298 (433)
T KOG0268|consen 228 LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS-------RPLN--VHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRI 298 (433)
T ss_pred eeccccceecCccccceeeccccccceehhhhhhc-------ccch--hhcccceeEEEeccCCCcchhccccccceEEE
Confidence 22345789999988889999999999999998753 3454 788999999999999 789999999999999
Q ss_pred EcCC-CceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 333 WGSD-GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 333 Wd~~-~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
|..+ +..-..+....-..|.++.|+.|.+++++|+.|+.|++|....
T Consensus 299 f~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 299 FPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred eecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 9994 3322222222223599999999999999999999999998743
No 97
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.6e-21 Score=206.06 Aligned_cols=290 Identities=20% Similarity=0.289 Sum_probs=214.8
Q ss_pred CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccc
Q 001391 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLS 123 (1088)
Q Consensus 44 ~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~ 123 (1088)
...+.|+-.+.-.+. . +.+.|..++|+|.. | .-+|+.+.-.+.||+.... .
T Consensus 9 ~e~~~w~~~~~~~~~--k--e~~~vssl~fsp~~----P------~d~aVt~S~rvqly~~~~~---------------~ 59 (487)
T KOG0310|consen 9 PEIRYWRQETFPPVH--K--EHNSVSSLCFSPKH----P------YDFAVTSSVRVQLYSSVTR---------------S 59 (487)
T ss_pred ccchhhhhhcccccc--c--ccCcceeEecCCCC----C------CceEEecccEEEEEecchh---------------h
Confidence 345566644432221 1 22369999999752 4 4577888889999998753 2
Q ss_pred eeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCC
Q 001391 124 LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN 203 (1088)
Q Consensus 124 ~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg 203 (1088)
..+.+....+.|.++.|-. ||++||.|...|.|+|+|..+...+..+..|.. .+....|. ..++..+++|+.|+
T Consensus 60 ~~k~~srFk~~v~s~~fR~---DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~a-pv~~~~f~--~~d~t~l~s~sDd~ 133 (487)
T KOG0310|consen 60 VRKTFSRFKDVVYSVDFRS---DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQA-PVHVTKFS--PQDNTMLVSGSDDK 133 (487)
T ss_pred hhhhHHhhccceeEEEeec---CCeEEEccCCcCcEEEeccccHHHHHHHhhccC-ceeEEEec--ccCCeEEEecCCCc
Confidence 3444555668999999999 999999999999999999777555555554433 23334442 24567888999999
Q ss_pred eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCC-EEEEEECCCcEEE
Q 001391 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSARI 282 (1088)
Q Consensus 204 ~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~-~l~s~s~Dg~v~i 282 (1088)
.+++||+. +......+.+|++-|.+.+|+|... .++|||.||.||+
T Consensus 134 v~k~~d~s---------------------------------~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl 180 (487)
T KOG0310|consen 134 VVKYWDLS---------------------------------TAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRL 180 (487)
T ss_pred eEEEEEcC---------------------------------CcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEE
Confidence 99999998 4445668899999999999999654 7899999999999
Q ss_pred EEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CC-ceeEEEcccCCCCeEEEEEcC
Q 001391 283 WEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DG-KQLKMIKEHIGRGIWRCLYDS 358 (1088)
Q Consensus 283 Wd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~-~~~~~~~~h~~~~V~~l~~~~ 358 (1088)
||++.... . .....|..+|-.+.+- +..|++++. ..++|||+ .| +.+..+..|.. .|+|+++..
T Consensus 181 ~DtR~~~~-------~---v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~K-tVTcL~l~s 248 (487)
T KOG0310|consen 181 WDTRSLTS-------R---VVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNK-TVTCLRLAS 248 (487)
T ss_pred EEeccCCc-------e---eEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccc-eEEEEEeec
Confidence 99988521 1 2567899999999997 578888774 57999999 35 44555555776 799999999
Q ss_pred CCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCC-eEEEEe
Q 001391 359 LSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIAT 437 (1088)
Q Consensus 359 dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~-~ll~~t 437 (1088)
++..|++||-|+.|++||+..- .-+.....| ++|-+++.+|++ .++++.
T Consensus 249 ~~~rLlS~sLD~~VKVfd~t~~-----------------Kvv~s~~~~-------------~pvLsiavs~dd~t~viGm 298 (487)
T KOG0310|consen 249 DSTRLLSGSLDRHVKVFDTTNY-----------------KVVHSWKYP-------------GPVLSIAVSPDDQTVVIGM 298 (487)
T ss_pred CCceEeecccccceEEEEccce-----------------EEEEeeecc-------------cceeeEEecCCCceEEEec
Confidence 9999999999999999997431 112222222 468999999977 556666
Q ss_pred cCCeEE
Q 001391 438 NHGYLY 443 (1088)
Q Consensus 438 ~~g~i~ 443 (1088)
.+|-+.
T Consensus 299 snGlv~ 304 (487)
T KOG0310|consen 299 SNGLVS 304 (487)
T ss_pred ccceee
Confidence 677654
No 98
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.88 E-value=8.2e-21 Score=222.06 Aligned_cols=295 Identities=15% Similarity=0.189 Sum_probs=226.6
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe---CCeEEEEECCC------------CeeEEEEeeeCCcceEEEEeccccccc
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS---GSQVLLYDLEA------------GTLIRPFQVFHGIRLHGISCNFINCTE 80 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~---d~~I~vwd~~t------------g~~~~~~~~~~~~~V~~i~~s~~~~~~ 80 (1088)
+...|.+++.+ || +..+|+|+ |+.++||+.+. .+.+.+...|.+ .|.|+.|+
T Consensus 12 ~~~~IfSIdv~--pd----g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~-sv~CVR~S------ 78 (942)
T KOG0973|consen 12 NEKSIFSIDVH--PD----GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDG-SVNCVRFS------ 78 (942)
T ss_pred CCeeEEEEEec--CC----ceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccC-ceeEEEEC------
Confidence 44569999999 99 89999976 57888999743 233445555555 79999999
Q ss_pred CCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCC----ccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc
Q 001391 81 GSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQP----ETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS 155 (1088)
Q Consensus 81 ~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~----~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~ 155 (1088)
||| .+||+++ |+.|.||.... ......|.. ...-..+....+.+|+..|.+++|+| ++.+||+++.
T Consensus 79 -~dG----~~lAsGSDD~~v~iW~~~~-~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp---~~~~lvS~s~ 149 (942)
T KOG0973|consen 79 -PDG----SYLASGSDDRLVMIWERAE-IGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP---DDSLLVSVSL 149 (942)
T ss_pred -CCC----CeEeeccCcceEEEeeecc-cCCcccccccccccccceeeEEEEEecCCCccceeccCC---CccEEEEecc
Confidence 898 7888776 78899999884 111122211 12225778899999999999999999 9999999999
Q ss_pred CCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCc
Q 001391 156 DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (1088)
Q Consensus 156 Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~ 235 (1088)
|++|.+||..+.+.+..+.+|.. .+-.+.+ +|-|.++|+-+.|++|+||+..
T Consensus 150 DnsViiwn~~tF~~~~vl~~H~s-~VKGvs~---DP~Gky~ASqsdDrtikvwrt~------------------------ 201 (942)
T KOG0973|consen 150 DNSVIIWNAKTFELLKVLRGHQS-LVKGVSW---DPIGKYFASQSDDRTLKVWRTS------------------------ 201 (942)
T ss_pred cceEEEEccccceeeeeeecccc-cccceEE---CCccCeeeeecCCceEEEEEcc------------------------
Confidence 99999999999988888887754 2334444 7899999999999999999976
Q ss_pred eeEecccccceeeeEEEeCC------CCCEEEEEEcCCCCEEEEEEC----CCcEEEEEcCCCcccCCCCceeeeceeee
Q 001391 236 CFKLQDQQHTAVNLFRLVGH------EGSIFRIEWSSCGSKLVSVSD----DRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (1088)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~gh------~~~V~~v~~sp~g~~l~s~s~----Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~ 305 (1088)
+....+.+.++ +.-...+.|+|||++|++.-. -.++.|.+-.+.+. . ..+.
T Consensus 202 ---------dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~---------~-~~Lv 262 (942)
T KOG0973|consen 202 ---------DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKV---------D-KDLV 262 (942)
T ss_pred ---------cceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCcee---------e-eeee
Confidence 22223333322 335778999999999998532 23566666544321 1 3889
Q ss_pred ccCcceEEEEECC-------C------------EEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEE
Q 001391 306 GHNARVWDCCLTD-------S------------FIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVT 365 (1088)
Q Consensus 306 ~h~~~I~~v~~~~-------~------------~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~t 365 (1088)
||.+++.+++|++ . .+++|+.|++|-||.. ..+++.....-...+|..++|+|||..|+.
T Consensus 263 GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~Lfa 342 (942)
T KOG0973|consen 263 GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFA 342 (942)
T ss_pred cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEE
Confidence 9999999999972 2 6889999999999998 667776655545558999999999999999
Q ss_pred EeCCCCEEEEEcCC
Q 001391 366 AGFDSAIKVHQFQA 379 (1088)
Q Consensus 366 g~~Dg~I~iwd~~~ 379 (1088)
++.||+|.+..++.
T Consensus 343 cS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 343 CSLDGTVALIHFEE 356 (942)
T ss_pred EecCCeEEEEEcch
Confidence 99999999999854
No 99
>PTZ00421 coronin; Provisional
Probab=99.88 E-value=6.8e-20 Score=213.37 Aligned_cols=272 Identities=9% Similarity=0.058 Sum_probs=193.3
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeE----------E---EEeeeCCcceEEEEecccccccC
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLI----------R---PFQVFHGIRLHGISCNFINCTEG 81 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~----------~---~~~~~~~~~V~~i~~s~~~~~~~ 81 (1088)
+...|....++ +| +..++++. +.....|+...|..+ . .+.+|.+ .|.+++|+|.
T Consensus 19 ~~~~i~~~~~~--~d----~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~-~V~~v~fsP~----- 86 (493)
T PTZ00421 19 HFLNVTPSTAL--WD----CSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEG-PIIDVAFNPF----- 86 (493)
T ss_pred ceecccccccc--CC----CCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCC-CEEEEEEcCC-----
Confidence 44566666666 66 44444444 455666765444322 1 3556655 7999999931
Q ss_pred CCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCC-CEEEEEEcCCcEE
Q 001391 82 SVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIR 160 (1088)
Q Consensus 82 ~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~-~~lasgs~Dg~V~ 160 (1088)
+++ .+++++.|++|+||++........ ..+.+..+.+|...|.+++|+| ++ .+|++|+.|++|+
T Consensus 87 -d~~---~LaSgS~DgtIkIWdi~~~~~~~~--------~~~~l~~L~gH~~~V~~l~f~P---~~~~iLaSgs~DgtVr 151 (493)
T PTZ00421 87 -DPQ---KLFTASEDGTIMGWGIPEEGLTQN--------ISDPIVHLQGHTKKVGIVSFHP---SAMNVLASAGADMVVN 151 (493)
T ss_pred -CCC---EEEEEeCCCEEEEEecCCCccccc--------cCcceEEecCCCCcEEEEEeCc---CCCCEEEEEeCCCEEE
Confidence 541 444455699999999975321000 1245678899999999999999 65 6999999999999
Q ss_pred EEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEec
Q 001391 161 VWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240 (1088)
Q Consensus 161 iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 240 (1088)
|||+.+++.+..+..+.. .++++++ ++++.+|++++.|+.|++||++
T Consensus 152 IWDl~tg~~~~~l~~h~~-~V~sla~---spdG~lLatgs~Dg~IrIwD~r----------------------------- 198 (493)
T PTZ00421 152 VWDVERGKAVEVIKCHSD-QITSLEW---NLDGSLLCTTSKDKKLNIIDPR----------------------------- 198 (493)
T ss_pred EEECCCCeEEEEEcCCCC-ceEEEEE---ECCCCEEEEecCCCEEEEEECC-----------------------------
Confidence 999999988888776544 4667776 5789999999999999999998
Q ss_pred ccccceeeeEEEeCCCCC-EEEEEEcCCCCEEEEEE----CCCcEEEEEcCCCcccCCCCceeeeceeee-ccCcceEEE
Q 001391 241 DQQHTAVNLFRLVGHEGS-IFRIEWSSCGSKLVSVS----DDRSARIWEVRAEYWKDSDSIEEVGSSVLY-GHNARVWDC 314 (1088)
Q Consensus 241 ~~~~~~~~~~~~~gh~~~-V~~v~~sp~g~~l~s~s----~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~-~h~~~I~~v 314 (1088)
++..+..+.+|.+. +..+.|.+++..+++++ .|+.|++||+++... .+. ... .+...+...
T Consensus 199 ----sg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~-------p~~--~~~~d~~~~~~~~ 265 (493)
T PTZ00421 199 ----DGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS-------PYS--TVDLDQSSALFIP 265 (493)
T ss_pred ----CCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC-------cee--EeccCCCCceEEE
Confidence 66677788889865 45788999888887765 479999999986432 221 222 223345555
Q ss_pred EEC--CCEEEEEe-CCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCC
Q 001391 315 CLT--DSFIITAG-EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS 360 (1088)
Q Consensus 315 ~~~--~~~l~sg~-~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg 360 (1088)
.|+ +++|++++ .|+.|++||+ +++.+.........++..++|.|..
T Consensus 266 ~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 266 FFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred EEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 665 57788877 5999999999 6676666554444467888888853
No 100
>PTZ00420 coronin; Provisional
Probab=99.88 E-value=6.7e-20 Score=213.96 Aligned_cols=251 Identities=10% Similarity=0.094 Sum_probs=181.9
Q ss_pred CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCC-ccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCcccc
Q 001391 43 GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSV-STRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCV 120 (1088)
Q Consensus 43 d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d-~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~ 120 (1088)
.+.|++|+......+..+.+|.+ .|.+++|+ |+ + .+|++ +.|++|+||++.........
T Consensus 53 ~gvI~L~~~~r~~~v~~L~gH~~-~V~~lafs-------P~~~----~lLASgS~DgtIrIWDi~t~~~~~~~------- 113 (568)
T PTZ00420 53 IGAIRLENQMRKPPVIKLKGHTS-SILDLQFN-------PCFS----EILASGSEDLTIRVWEIPHNDESVKE------- 113 (568)
T ss_pred eeEEEeeecCCCceEEEEcCCCC-CEEEEEEc-------CCCC----CEEEEEeCCCeEEEEECCCCCccccc-------
Confidence 37899999888788888888776 79999999 54 3 45554 55999999999753210000
Q ss_pred ccceeeeccCCCCcEEEEEEecccCCCCE-EEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEE
Q 001391 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRS-LAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASG 199 (1088)
Q Consensus 121 ~~~~~~~l~~h~~~I~~v~f~p~~~d~~~-lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg 199 (1088)
....+..+.+|...|.+++|+| ++.. |++++.|++|++||+.+++.+..+..+ ..+.++.+ ++++.+|+++
T Consensus 114 i~~p~~~L~gH~~~V~sVaf~P---~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~--~~V~Slsw---spdG~lLat~ 185 (568)
T PTZ00420 114 IKDPQCILKGHKKKISIIDWNP---MNYYIMCSSGFDSFVNIWDIENEKRAFQINMP--KKLSSLKW---NIKGNLLSGT 185 (568)
T ss_pred cccceEEeecCCCcEEEEEECC---CCCeEEEEEeCCCeEEEEECCCCcEEEEEecC--CcEEEEEE---CCCCCEEEEE
Confidence 0134556789999999999999 7764 579999999999999999877766533 34667776 6789999999
Q ss_pred ecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEE-----EEEcCCCCEEEEE
Q 001391 200 TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFR-----IEWSSCGSKLVSV 274 (1088)
Q Consensus 200 ~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~-----v~~sp~g~~l~s~ 274 (1088)
+.|+.|+|||++ ++..+..+.+|.+.+.. ..|++++.+++++
T Consensus 186 s~D~~IrIwD~R---------------------------------sg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTt 232 (568)
T PTZ00420 186 CVGKHMHIIDPR---------------------------------KQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILST 232 (568)
T ss_pred ecCCEEEEEECC---------------------------------CCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEE
Confidence 999999999998 67777888999886543 3456899999998
Q ss_pred ECCC----cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEcc-cC
Q 001391 275 SDDR----SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKE-HI 347 (1088)
Q Consensus 275 s~Dg----~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~-h~ 347 (1088)
+.|+ +|+|||++... .++....+..+...+...... +.++++|+.|++|++|++....+..+.. +.
T Consensus 233 G~d~~~~R~VkLWDlr~~~-------~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s 305 (568)
T PTZ00420 233 GFSKNNMREMKLWDLKNTT-------SALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKS 305 (568)
T ss_pred EcCCCCccEEEEEECCCCC-------CceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeeccccc
Confidence 8774 79999998632 222211223333333222222 5788999999999999994333444332 22
Q ss_pred CCCeEEEEEcCCC
Q 001391 348 GRGIWRCLYDSLS 360 (1088)
Q Consensus 348 ~~~V~~l~~~~dg 360 (1088)
..++.+++|.|..
T Consensus 306 ~~p~~g~~f~Pkr 318 (568)
T PTZ00420 306 CSPFRSFGFLPKQ 318 (568)
T ss_pred CCCccceEEcccc
Confidence 2378889999864
No 101
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.1e-20 Score=187.90 Aligned_cols=316 Identities=16% Similarity=0.236 Sum_probs=212.3
Q ss_pred ceEEecCCCc-eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC--eeEEEEe--eeCCcceEEEEecccccc
Q 001391 6 LSEWRLDVGQ-YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG--TLIRPFQ--VFHGIRLHGISCNFINCT 79 (1088)
Q Consensus 6 i~iWdl~~g~-~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg--~~~~~~~--~~~~~~V~~i~~s~~~~~ 79 (1088)
++-|++...+ |.+.|++|+|+ .| |++||+++ |+.|+||++.+- +..+.++ ..-+ --..+.|+
T Consensus 74 ~Hpl~~~~LKgH~~~vt~~~Fs--Sd----GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d-hpT~V~Fa----- 141 (420)
T KOG2096|consen 74 VHPLNVSVLKGHKKEVTDVAFS--SD----GKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD-HPTRVVFA----- 141 (420)
T ss_pred ccchhhhhhhccCCceeeeEEc--CC----CceeEEEeCCceEEEEecchhhhhhhhHhhccccCC-CceEEEEC-----
Confidence 4445555554 78899999999 88 99999988 699999999763 2222221 1112 34678898
Q ss_pred cCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcE
Q 001391 80 EGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSI 159 (1088)
Q Consensus 80 ~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V 159 (1088)
||-+ ...+++..+.++++|.+..... +.. +...+.......-+.|.-.|..+-... ++.+|++++.|..|
T Consensus 142 --pDc~--s~vv~~~~g~~l~vyk~~K~~d-G~~--~~~~v~~D~~~f~~kh~v~~i~iGiA~---~~k~imsas~dt~i 211 (420)
T KOG2096|consen 142 --PDCK--SVVVSVKRGNKLCVYKLVKKTD-GSG--SHHFVHIDNLEFERKHQVDIINIGIAG---NAKYIMSASLDTKI 211 (420)
T ss_pred --CCcc--eEEEEEccCCEEEEEEeeeccc-CCC--CcccccccccccchhcccceEEEeecC---CceEEEEecCCCcE
Confidence 5542 2455555688999999874331 110 000011112223345677777777766 88899999999999
Q ss_pred EEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEe
Q 001391 160 RVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1088)
Q Consensus 160 ~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 239 (1088)
.+|++. |+.+.++...... .+.+++ +|+|.+|++++.---|++|.+-..+... +
T Consensus 212 ~lw~lk-Gq~L~~idtnq~~-n~~aav---SP~GRFia~~gFTpDVkVwE~~f~kdG~-------------------f-- 265 (420)
T KOG2096|consen 212 CLWDLK-GQLLQSIDTNQSS-NYDAAV---SPDGRFIAVSGFTPDVKVWEPIFTKDGT-------------------F-- 265 (420)
T ss_pred EEEecC-Cceeeeecccccc-ccceee---CCCCcEEEEecCCCCceEEEEEeccCcc-------------------h--
Confidence 999998 8888777644322 233333 7999999999999999999986221111 0
Q ss_pred cccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeecc--CcceEEEEEC
Q 001391 240 QDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH--NARVWDCCLT 317 (1088)
Q Consensus 240 ~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h--~~~I~~v~~~ 317 (1088)
.....+..++||...|..++|+|+...++|.|.||++|+||++-.-....+ ...++......| .+....+..+
T Consensus 266 ----qev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD-pk~Lk~g~~pl~aag~~p~RL~ls 340 (420)
T KOG2096|consen 266 ----QEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD-PKILKEGSAPLHAAGSEPVRLELS 340 (420)
T ss_pred ----hhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC-chHhhcCCcchhhcCCCceEEEeC
Confidence 034567789999999999999999999999999999999998754221111 122211011112 2223356666
Q ss_pred C-CEEEEEeCCCcEEEEcC-CCceeEEEc-ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 001391 318 D-SFIITAGEDCTCRVWGS-DGKQLKMIK-EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 318 ~-~~l~sg~~Dg~i~vWd~-~~~~~~~~~-~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd 376 (1088)
| ..++..+...++.++.. +|+...+++ .|.+ .|.+|+|+++|++++|+| |..+++..
T Consensus 341 P~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~-~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 341 PSGDSLAVSFGSDLKVFASEDGKDYPELEDIHST-TISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred CCCcEEEeecCCceEEEEcccCccchhHHHhhcC-ceeeEEecCCCcEEeeec-ceeeeeec
Confidence 2 34444555668999988 777766664 4655 799999999999999987 56777764
No 102
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.88 E-value=4e-21 Score=193.43 Aligned_cols=230 Identities=16% Similarity=0.246 Sum_probs=177.1
Q ss_pred EEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCC--CCCCCCCC-ccccccceeeeccCCCC
Q 001391 58 RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFEL--SPNSQYQP-ETCVNLSLVQSLPRLSH 133 (1088)
Q Consensus 58 ~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~--~~~~~~~~-~~~~~~~~~~~l~~h~~ 133 (1088)
..+..|+. .+.+.+|+ +|| .++|+++ |.+|+|.|++.-- .......+ +....-..++++-.|.+
T Consensus 106 ~ylt~HK~-~cR~aafs-------~DG----~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~d 173 (430)
T KOG0640|consen 106 KYLTSHKS-PCRAAAFS-------PDG----SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVD 173 (430)
T ss_pred EEEeeccc-ceeeeeeC-------CCC----cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccC
Confidence 34555665 79999999 898 7777766 9999999998211 01111111 11123467889999999
Q ss_pred cEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccC
Q 001391 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (1088)
Q Consensus 134 ~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~ 213 (1088)
.|+++.|+| ....|++|+.|++|+++|+......
T Consensus 174 evn~l~FHP---re~ILiS~srD~tvKlFDfsK~saK------------------------------------------- 207 (430)
T KOG0640|consen 174 EVNDLDFHP---RETILISGSRDNTVKLFDFSKTSAK------------------------------------------- 207 (430)
T ss_pred cccceeecc---hhheEEeccCCCeEEEEecccHHHH-------------------------------------------
Confidence 999999999 8999999999999999997432100
Q ss_pred ccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCC
Q 001391 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS 293 (1088)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~ 293 (1088)
+..+ .......|.++.|+|.|.+|+.|.+-.++++||+++.++
T Consensus 208 ---------------------------------rA~K-~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qc--- 250 (430)
T KOG0640|consen 208 ---------------------------------RAFK-VFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQC--- 250 (430)
T ss_pred ---------------------------------HHHH-HhhccceeeeEeecCCCceEEEecCCCceeEEeccceeE---
Confidence 0000 111335689999999999999999999999999999644
Q ss_pred CCceeeec-eeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEE-cccCCCCeEEEEEcCCCCEEEEEeC
Q 001391 294 DSIEEVGS-SVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMI-KEHIGRGIWRCLYDSLSSLLVTAGF 368 (1088)
Q Consensus 294 ~~~~~i~~-~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~-~~h~~~~V~~l~~~~dg~~l~tg~~ 368 (1088)
+-+ ..-.+|.+.|+++.++ +++.++|+.||.|++||- .++++.++ +.|.+..|.+..|..+++++++.|.
T Consensus 251 -----fvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~ 325 (430)
T KOG0640|consen 251 -----FVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK 325 (430)
T ss_pred -----eeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC
Confidence 321 2456799999999998 789999999999999998 88998887 5677778999999999999999999
Q ss_pred CCCEEEEEcC-CCCCCcccC
Q 001391 369 DSAIKVHQFQ-AFLPGSLES 387 (1088)
Q Consensus 369 Dg~I~iwd~~-~~~~~~~~~ 387 (1088)
|..+++|.+. +.+++.+.|
T Consensus 326 DS~vkLWEi~t~R~l~~YtG 345 (430)
T KOG0640|consen 326 DSTVKLWEISTGRMLKEYTG 345 (430)
T ss_pred cceeeeeeecCCceEEEEec
Confidence 9999999994 455555443
No 103
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=3.8e-20 Score=182.88 Aligned_cols=274 Identities=12% Similarity=0.159 Sum_probs=208.3
Q ss_pred eeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec--cCCceeEEEEeeecCCCCCcEEEEEecCC
Q 001391 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH--SPERCLLYSMKLWGDNLEALRIASGTIYN 203 (1088)
Q Consensus 126 ~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~--~~~~~~~~s~~~~~~s~~~~~l~sg~~dg 203 (1088)
+.+.+|...|.+++|+. +|..|++|+.|+++++|+++..+...... ++.. .+-.++++ .++..++++++.|.
T Consensus 14 r~~~~~~~~v~Sv~wn~---~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~-svdql~w~--~~~~d~~atas~dk 87 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNC---DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTD-SVDQLCWD--PKHPDLFATASGDK 87 (313)
T ss_pred HHhhhhhhcceEEEEcc---cCceeeecccCCceEEEEecchhhhhhhcccCCCc-chhhheeC--CCCCcceEEecCCc
Confidence 66779999999999999 99999999999999999998876555443 2222 22233333 45667899999999
Q ss_pred eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEE
Q 001391 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIW 283 (1088)
Q Consensus 204 ~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iW 283 (1088)
+|++||.+ .+++........+ =.-+.|+|+|++++.++.|..|.+.
T Consensus 88 ~ir~wd~r---------------------------------~~k~~~~i~~~~e-ni~i~wsp~g~~~~~~~kdD~it~i 133 (313)
T KOG1407|consen 88 TIRIWDIR---------------------------------SGKCTARIETKGE-NINITWSPDGEYIAVGNKDDRITFI 133 (313)
T ss_pred eEEEEEec---------------------------------cCcEEEEeeccCc-ceEEEEcCCCCEEEEecCcccEEEE
Confidence 99999999 6777777664434 3457899999999999999999999
Q ss_pred EcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCC
Q 001391 284 EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS 360 (1088)
Q Consensus 284 d~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg 360 (1088)
|.++.+. . ........+.-++|+ +++++.-...|+|.|-.. .-+++..++.|.. ...+|.|+|+|
T Consensus 134 d~r~~~~--------~---~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~s-nCicI~f~p~G 201 (313)
T KOG1407|consen 134 DARTYKI--------V---NEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPS-NCICIEFDPDG 201 (313)
T ss_pred Eecccce--------e---ehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCc-ceEEEEECCCC
Confidence 9988543 1 222223445666776 677777777899999998 7899999999998 68899999999
Q ss_pred CEEEEEeCCCCEEEEEcCC-CCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecC
Q 001391 361 SLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNH 439 (1088)
Q Consensus 361 ~~l~tg~~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~ 439 (1088)
+++|+|+.|..+.+||++. -+++.+ ...+-+||.+.|+-+|+++++.+.
T Consensus 202 ryfA~GsADAlvSLWD~~ELiC~R~i------------------------------sRldwpVRTlSFS~dg~~lASaSE 251 (313)
T KOG1407|consen 202 RYFATGSADALVSLWDVDELICERCI------------------------------SRLDWPVRTLSFSHDGRMLASASE 251 (313)
T ss_pred ceEeeccccceeeccChhHhhhheee------------------------------ccccCceEEEEeccCcceeeccCc
Confidence 9999999999999999953 222222 123357999999999999999877
Q ss_pred CeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCC
Q 001391 440 GYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGK 493 (1088)
Q Consensus 440 g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~d 493 (1088)
..+.- +-..+++. ++.+.+...+...++++|.. .+||.+..|
T Consensus 252 Dh~ID--IA~vetGd--~~~eI~~~~~t~tVAWHPk~--------~LLAyA~dd 293 (313)
T KOG1407|consen 252 DHFID--IAEVETGD--RVWEIPCEGPTFTVAWHPKR--------PLLAYACDD 293 (313)
T ss_pred cceEE--eEecccCC--eEEEeeccCCceeEEecCCC--------ceeeEEecC
Confidence 76443 33333333 45567778888899997765 677766654
No 104
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.4e-20 Score=214.95 Aligned_cols=264 Identities=11% Similarity=0.167 Sum_probs=200.1
Q ss_pred eEEEEe-eeCCcceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCC-------------------------
Q 001391 56 LIRPFQ-VFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFEL------------------------- 108 (1088)
Q Consensus 56 ~~~~~~-~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~------------------------- 108 (1088)
....++ .|.+ .|+++.|| +|| .+||++| |+.|+||.+....
T Consensus 258 ~~Qe~~~ah~g-aIw~mKFS-------~DG----KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~ 325 (712)
T KOG0283|consen 258 VVQEISNAHKG-AIWAMKFS-------HDG----KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPS 325 (712)
T ss_pred EeeccccccCC-cEEEEEeC-------CCC----ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcc
Confidence 344555 4555 79999999 999 7888877 9999999987510
Q ss_pred --CC----------C-CCCCCc-------cccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc
Q 001391 109 --SP----------N-SQYQPE-------TCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (1088)
Q Consensus 109 --~~----------~-~~~~~~-------~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~ 168 (1088)
.. . ...++. -....++++.+.||.+.|.++.|+. .++|++++.|.|||+|++...+
T Consensus 326 ~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK----n~fLLSSSMDKTVRLWh~~~~~ 401 (712)
T KOG0283|consen 326 TSSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK----NNFLLSSSMDKTVRLWHPGRKE 401 (712)
T ss_pred ccccccccccccccccccCCccccCCCccccccccchhhhhccchhheeccccc----CCeeEeccccccEEeecCCCcc
Confidence 00 0 000010 0124567889999999999999995 5688899999999999999999
Q ss_pred eEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee
Q 001391 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1088)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 248 (1088)
++..+.+.. .+.+++|++ .|+.++++|+.||.|+||++. ..+
T Consensus 402 CL~~F~Hnd--fVTcVaFnP--vDDryFiSGSLD~KvRiWsI~---------------------------------d~~- 443 (712)
T KOG0283|consen 402 CLKVFSHND--FVTCVAFNP--VDDRYFISGSLDGKVRLWSIS---------------------------------DKK- 443 (712)
T ss_pred eeeEEecCC--eeEEEEecc--cCCCcEeecccccceEEeecC---------------------------------cCe-
Confidence 999987554 577888864 578999999999999999997 222
Q ss_pred eEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeee----ceeeeccCcceEEEEEC---CCEE
Q 001391 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG----SSVLYGHNARVWDCCLT---DSFI 321 (1088)
Q Consensus 249 ~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~----~~~~~~h~~~I~~v~~~---~~~l 321 (1088)
+.....-..-|++++|.|||+..+.|+.+|.+++|+....+. ..... ...-..|. +|+.+.|. +..+
T Consensus 444 Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~-----~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~v 517 (712)
T KOG0283|consen 444 VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKL-----VSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEV 517 (712)
T ss_pred eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeE-----EEeeeEeeccCccccCc-eeeeeEecCCCCCeE
Confidence 222222337899999999999999999999999999988654 11111 00111233 89999997 3568
Q ss_pred EEEeCCCcEEEEcC-CCceeEEEcccCC-CCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 322 ITAGEDCTCRVWGS-DGKQLKMIKEHIG-RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 322 ~sg~~Dg~i~vWd~-~~~~~~~~~~h~~-~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+..+.|..|||+|. +.+++..|+++.. ..=....|+.||++|++++.|..|.+|+...
T Consensus 518 LVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 518 LVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred EEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 88899999999999 6778888887654 2234567889999999999999999999854
No 105
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.87 E-value=5.3e-21 Score=192.57 Aligned_cols=283 Identities=13% Similarity=0.230 Sum_probs=211.1
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCC------------C------eeEEEEeeeCCcceEEEEeccc
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA------------G------TLIRPFQVFHGIRLHGISCNFI 76 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t------------g------~~~~~~~~~~~~~V~~i~~s~~ 76 (1088)
|-+++.|-+|+ || |.++|+|+ |-.|+|.|++. | -+++++-.|-. .|..+.|.
T Consensus 111 HK~~cR~aafs--~D----G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~d-evn~l~FH-- 181 (430)
T KOG0640|consen 111 HKSPCRAAAFS--PD----GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVD-EVNDLDFH-- 181 (430)
T ss_pred cccceeeeeeC--CC----CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccC-cccceeec--
Confidence 66889999999 99 99999999 89999999861 1 13556655555 69999999
Q ss_pred ccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc
Q 001391 77 NCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS 155 (1088)
Q Consensus 77 ~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~ 155 (1088)
|.. .+|+++ .|++|+++|+.... .+.-...-.....|.++.|+| .|.+|+.|..
T Consensus 182 -----Pre----~ILiS~srD~tvKlFDfsK~s-------------aKrA~K~~qd~~~vrsiSfHP---sGefllvgTd 236 (430)
T KOG0640|consen 182 -----PRE----TILISGSRDNTVKLFDFSKTS-------------AKRAFKVFQDTEPVRSISFHP---SGEFLLVGTD 236 (430)
T ss_pred -----chh----heEEeccCCCeEEEEecccHH-------------HHHHHHHhhccceeeeEeecC---CCceEEEecC
Confidence 543 455554 49999999998543 122222223457899999999 9999999999
Q ss_pred CCcEEEEEcCCCceEEEecc--CCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCC
Q 001391 156 DNSIRVWDISNSSIILEVHS--PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (1088)
Q Consensus 156 Dg~V~iWd~~~~~~~~~~~~--~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~ 233 (1088)
..++++||+++-++...... .....+.++.+ ++.+.+-++|+.||.|++||-.
T Consensus 237 Hp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Y---s~t~~lYvTaSkDG~IklwDGV---------------------- 291 (430)
T KOG0640|consen 237 HPTLRLYDVNTYQCFVSANPDDQHTGAITQVRY---SSTGSLYVTASKDGAIKLWDGV---------------------- 291 (430)
T ss_pred CCceeEEeccceeEeeecCcccccccceeEEEe---cCCccEEEEeccCCcEEeeccc----------------------
Confidence 99999999999888655431 22333455555 7889999999999999999977
Q ss_pred CceeEecccccceeeeEEEe-CCCC-CEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcc-
Q 001391 234 FKCFKLQDQQHTAVNLFRLV-GHEG-SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR- 310 (1088)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~-gh~~-~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~- 310 (1088)
.++++..+. .|.+ .|.+..|..+++++++.+.|..|++|.+.+++. +..++-.|-+++
T Consensus 292 -----------S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~--------l~~YtGAg~tgrq 352 (430)
T KOG0640|consen 292 -----------SNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM--------LKEYTGAGTTGRQ 352 (430)
T ss_pred -----------cHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce--------EEEEecCCcccch
Confidence 556665553 5654 699999999999999999999999999999754 321122222221
Q ss_pred --eEEEEEC--CCEEEEEe-CCCcEEEEcC-CCceeEEE-cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 311 --VWDCCLT--DSFIITAG-EDCTCRVWGS-DGKQLKMI-KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 311 --I~~v~~~--~~~l~sg~-~Dg~i~vWd~-~~~~~~~~-~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
-+...|+ ..+++.-. ..+.++-||. ++..+..+ -+|.+ ++..+.-+|.+.-++||+.|..+++|--
T Consensus 353 ~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~-a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 353 KHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNG-AVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCC-CceEEEeCCCCCceeeecccceeeeeee
Confidence 2334454 45665554 4578999999 44444433 47888 7999999999999999999999999964
No 106
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=5.2e-21 Score=210.55 Aligned_cols=348 Identities=17% Similarity=0.254 Sum_probs=237.2
Q ss_pred eEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC
Q 001391 89 FEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (1088)
Q Consensus 89 ~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~ 167 (1088)
++|.+ +.|+.|++|++.......+ .....++..|.+||++++..- +++.|++++.|-+|++|+...+
T Consensus 38 ryLfTgGRDg~i~~W~~~~d~~~~s---------~~~~asme~HsDWVNDiiL~~---~~~tlIS~SsDtTVK~W~~~~~ 105 (735)
T KOG0308|consen 38 RYLFTGGRDGIIRLWSVTQDSNEPS---------TPYIASMEHHSDWVNDIILCG---NGKTLISASSDTTVKVWNAHKD 105 (735)
T ss_pred ceEEecCCCceEEEeccccccCCcc---------cchhhhhhhhHhHHhhHHhhc---CCCceEEecCCceEEEeecccC
Confidence 44544 4599999999986541111 235778889999999999988 8889999999999999986432
Q ss_pred ceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccccee
Q 001391 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1088)
Q Consensus 168 ~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 247 (1088)
. .-
T Consensus 106 ~-----------------------------------------------------------------------------~~ 108 (735)
T KOG0308|consen 106 N-----------------------------------------------------------------------------TF 108 (735)
T ss_pred c-----------------------------------------------------------------------------ch
Confidence 1 01
Q ss_pred eeEEEeCCCCCEEEEEE-cCCCCEEEEEECCCcEEEEEcCCCcc--cCCCCceeeeceee-eccCcceEEEEEC--CCEE
Q 001391 248 NLFRLVGHEGSIFRIEW-SSCGSKLVSVSDDRSARIWEVRAEYW--KDSDSIEEVGSSVL-YGHNARVWDCCLT--DSFI 321 (1088)
Q Consensus 248 ~~~~~~gh~~~V~~v~~-sp~g~~l~s~s~Dg~v~iWd~~~~~~--~~~~~~~~i~~~~~-~~h~~~I~~v~~~--~~~l 321 (1088)
++..+..|.+-|.|+++ .++...++|||-|+.|.+||++++.. ..+....... .+ .|+...|.+++.. +..|
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~--sl~sG~k~siYSLA~N~t~t~i 186 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVN--SLGSGPKDSIYSLAMNQTGTII 186 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccc--cCCCCCccceeeeecCCcceEE
Confidence 12345679999999999 78888999999999999999997622 1111111112 23 3888999999998 4599
Q ss_pred EEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC-CCCCcccCCccccccCCCcc
Q 001391 322 ITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTE 399 (1088)
Q Consensus 322 ~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~ 399 (1088)
++|+..+.+++||. +++.+..+++|.. .|..+..++||..+++++.||+|++||+.. .++.++..
T Consensus 187 vsGgtek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v------------ 253 (735)
T KOG0308|consen 187 VSGGTEKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV------------ 253 (735)
T ss_pred EecCcccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEe------------
Confidence 99999999999999 7888889999998 699999999999999999999999999954 44444333
Q ss_pred eEEeeeCCCccceeeccCCCCceEEEEeccC-CeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCC
Q 001391 400 IFSIKIPNFSEQIRLTDSKSEYVRCLHLTSE-DTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPK 478 (1088)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 478 (1088)
|.+.|.++..+|+ ..++.+..+|.|+.-++.+... ...+ ..++.++..+....
T Consensus 254 ------------------H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~--~tli--ck~daPv~~l~~~~---- 307 (735)
T KOG0308|consen 254 ------------------HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK--STLI--CKEDAPVLKLHLHE---- 307 (735)
T ss_pred ------------------ccCceEEEeeCCCcceEEecCCCCcEEecccCCchh--heEe--ecCCCchhhhhhcc----
Confidence 3345667766664 3788888999999877766422 1112 12233443333321
Q ss_pred CcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCc
Q 001391 479 YPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSS 558 (1088)
Q Consensus 479 ~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~ 558 (1088)
+++-+=+++.|+.|+-|...... .+++.+.+.+ -+.+....+.+....+.
T Consensus 308 ----~~~~~WvtTtds~I~rW~~~~~~------------------------~l~~s~~~~~-~~T~~~~~~~~~~~tp~- 357 (735)
T KOG0308|consen 308 ----HDNSVWVTTTDSSIKRWKLEPDI------------------------ALSVSGDLDF-FSTDSNNHSCDLTNTPD- 357 (735)
T ss_pred ----ccCCceeeeccccceecCCcccc------------------------ccccCCCCCc-ccccCCCccccccCCCc-
Confidence 12333556678888888654211 1233333333 22333333343321110
Q ss_pred ccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcc
Q 001391 559 VCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (1088)
Q Consensus 559 ~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~ 612 (1088)
. ...-+..|.--++-.|.+.++|=+..|++.+||+-..
T Consensus 358 ---------------~-vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~ 395 (735)
T KOG0308|consen 358 ---------------S-VIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILAC 395 (735)
T ss_pred ---------------e-eccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeee
Confidence 0 0011223445555678899999999999999998764
No 107
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=6.6e-20 Score=184.93 Aligned_cols=280 Identities=19% Similarity=0.255 Sum_probs=201.9
Q ss_pred eCCCCCEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCc
Q 001391 253 VGHEGSIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCT 329 (1088)
Q Consensus 253 ~gh~~~V~~v~~sp~-g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~ 329 (1088)
..-++.|.+|+|||. ..+++.+|.|++||+|++.... ..+. .....|.++|.+++|+ +..+++|+.|+.
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g-------~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~ 95 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG-------QLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQ 95 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCC-------cccc-hhhhccCCCeEEEEEccCCceEEeeccCCc
Confidence 346788999999994 4556689999999999998742 1222 2677899999999998 789999999999
Q ss_pred EEEEcCCCceeEEEcccCCCCeEEEEEcCCCC--EEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCC
Q 001391 330 CRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSS--LLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPN 407 (1088)
Q Consensus 330 i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~--~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (1088)
+++||+....+.++..|.+ +|..+.|-+... .|+||+.|.+|+.||.+.. .++.++..|+
T Consensus 96 ~k~wDL~S~Q~~~v~~Hd~-pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~-----------------~pv~t~~LPe 157 (347)
T KOG0647|consen 96 AKLWDLASGQVSQVAAHDA-PVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS-----------------NPVATLQLPE 157 (347)
T ss_pred eEEEEccCCCeeeeeeccc-ceeEEEEecCCCcceeEecccccceeecccCCC-----------------Ceeeeeeccc
Confidence 9999995557888889998 899999977655 8999999999999999642 2344444443
Q ss_pred CccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeE
Q 001391 408 FSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWV 487 (1088)
Q Consensus 408 ~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~l 487 (1088)
.+.++..- ...+++++.+..|..+++.+..+.. +....+....+.|+++..+. +..
T Consensus 158 -------------RvYa~Dv~-~pm~vVata~r~i~vynL~n~~te~--k~~~SpLk~Q~R~va~f~d~--------~~~ 213 (347)
T KOG0647|consen 158 -------------RVYAADVL-YPMAVVATAERHIAVYNLENPPTEF--KRIESPLKWQTRCVACFQDK--------DGF 213 (347)
T ss_pred -------------eeeehhcc-CceeEEEecCCcEEEEEcCCCcchh--hhhcCcccceeeEEEEEecC--------Cce
Confidence 22222222 2256778888889888886654422 22233345667777775543 666
Q ss_pred EEecCCCCEEEEEEcCCCcCcceeeeeeeeccccc---eeeeE-EEeecCCCeEEEEECCCCeEEEEecCCCCCcccccC
Q 001391 488 ALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIER---QLLGT-YWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYES 563 (1088)
Q Consensus 488 a~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~ 563 (1088)
|+|+-.|++-|..++.+.. +..+.++++..... .+..+ -.+|.|.-.+|+|++.||++..||-+....
T Consensus 214 alGsiEGrv~iq~id~~~~--~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~k------ 285 (347)
T KOG0647|consen 214 ALGSIEGRVAIQYIDDPNP--KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTK------ 285 (347)
T ss_pred EeeeecceEEEEecCCCCc--cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhh------
Confidence 9999999999999987644 44555556653221 12221 146889889999999999999999763211
Q ss_pred CcccceeeeeeeccccCceEEEEEeeeCCCEEEEEc
Q 001391 564 SKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGD 599 (1088)
Q Consensus 564 ~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs 599 (1088)
+ ++ ...|..+|+|.+|+.+|.++|-+.
T Consensus 286 -------L-k~-s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 286 -------L-KT-SETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred -------h-hc-cCcCCCccceeEecCCCCEEEEEe
Confidence 1 11 136788999999998888776553
No 108
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=2.3e-20 Score=198.36 Aligned_cols=308 Identities=16% Similarity=0.212 Sum_probs=220.5
Q ss_pred eeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEe-ccCCceeEEEEeeecCCCCCcEEEEEecCC
Q 001391 125 VQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV-HSPERCLLYSMKLWGDNLEALRIASGTIYN 203 (1088)
Q Consensus 125 ~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~-~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg 203 (1088)
+..+..|.-.|.+|+++| ++.++++++.|++|.-|++.+++...-+ ..++ . .
T Consensus 135 ~~~~~~H~~s~~~vals~---d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~e-----------------v-~------ 187 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSP---DDKRVFSASKDGTILKWDVLTGKKDRYIIERDE-----------------V-L------ 187 (479)
T ss_pred ceeeccccCcceEEEeec---cccceeecCCCcceeeeehhcCcccccccccch-----------------h-h------
Confidence 566778999999999999 9999999999999999999888654221 1110 0 0
Q ss_pred eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE-eCCCCCEEEEEEcCCCCEEEEEECCCcEEE
Q 001391 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCGSKLVSVSDDRSARI 282 (1088)
Q Consensus 204 ~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~i 282 (1088)
.. .+.+...- ++|...|.+++.++||++|++|+.|+.|.|
T Consensus 188 -----k~----------------------------------~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~I 228 (479)
T KOG0299|consen 188 -----KS----------------------------------HGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQI 228 (479)
T ss_pred -----hh----------------------------------ccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEE
Confidence 00 00111111 489999999999999999999999999999
Q ss_pred EEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCC
Q 001391 283 WEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL 359 (1088)
Q Consensus 283 Wd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~d 359 (1088)
|+..+. +.++ .+.+|...|.+++|. .+.+++++.|+++++|++ ....+.++.+|+. .|.+|....-
T Consensus 229 w~~~t~--------ehv~--~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd-~v~~IdaL~r 297 (479)
T KOG0299|consen 229 WDCDTL--------EHVK--VFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD-GVLGIDALSR 297 (479)
T ss_pred ecCccc--------chhh--cccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcc-ceeeechhcc
Confidence 999995 3443 789999999999998 578999999999999999 5667788999998 7999998888
Q ss_pred CCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecC
Q 001391 360 SSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNH 439 (1088)
Q Consensus 360 g~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~ 439 (1088)
++.+-+|+.|+++++|++..... . .+.++.+.+-|++|-.+.+++.++.+
T Consensus 298 eR~vtVGgrDrT~rlwKi~eesq----------------l--------------ifrg~~~sidcv~~In~~HfvsGSdn 347 (479)
T KOG0299|consen 298 ERCVTVGGRDRTVRLWKIPEESQ----------------L--------------IFRGGEGSIDCVAFINDEHFVSGSDN 347 (479)
T ss_pred cceEEeccccceeEEEeccccce----------------e--------------eeeCCCCCeeeEEEecccceeeccCC
Confidence 88777788999999999932110 0 12233467899999999999999999
Q ss_pred CeEEEEEeccCCcceeEEeeeecCCc--------ceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCccee
Q 001391 440 GYLYHTKLCDMDSVNWNKILQVSEGM--------PIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLS 511 (1088)
Q Consensus 440 g~i~~~~~~~~~~~~~~~~~~~~~~~--------~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~ 511 (1088)
|.|..|.+.......-.++.++-... -|.++++. +..+++|+|+.+|.|++|.+..+.. .+.
T Consensus 348 G~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i--------~~sdL~asGS~~G~vrLW~i~~g~r--~i~ 417 (479)
T KOG0299|consen 348 GSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVI--------PGSDLLASGSWSGCVRLWKIEDGLR--AIN 417 (479)
T ss_pred ceEEEeeecccCceeEeeccccccCCccccccccceeeeEec--------ccCceEEecCCCCceEEEEecCCcc--ccc
Confidence 99997776655433222222211111 34555553 4459999999999999999987632 111
Q ss_pred eeeeeeccccceeeeEEEeecCCCeEEEEE-CCCCeEEEEecC
Q 001391 512 FTFTWSAGIERQLLGTYWCKSLGHRFIFTA-DPKGRLKLWQLC 553 (1088)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~-~~dg~i~vwd~~ 553 (1088)
+-..+ .-.+-+.. .+|+++|+.+++| +..-.+--|-..
T Consensus 418 ~l~~l--s~~GfVNs--l~f~~sgk~ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 418 LLYSL--SLVGFVNS--LAFSNSGKRIVAGIGKEHRLGRWWCL 456 (479)
T ss_pred eeeec--ccccEEEE--EEEccCCCEEEEecccccccceeeEe
Confidence 11111 11121222 4688899866655 444455455443
No 109
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=8.4e-19 Score=169.04 Aligned_cols=285 Identities=15% Similarity=0.204 Sum_probs=216.1
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEeC-CeEEEEECCC------C--------eeEEEEeeeCCcceEEEEecccccccCC
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGSG-SQVLLYDLEA------G--------TLIRPFQVFHGIRLHGISCNFINCTEGS 82 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~d-~~I~vwd~~t------g--------~~~~~~~~~~~~~V~~i~~s~~~~~~~~ 82 (1088)
..|.+|+|. |. +.+.|+|++ .+.+|--... + ..+.+-..|+...|.+.+|| |
T Consensus 33 qairav~fh--p~----g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws-------~ 99 (350)
T KOG0641|consen 33 QAIRAVAFH--PA----GGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWS-------P 99 (350)
T ss_pred hheeeEEec--CC----CceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEec-------C
Confidence 458899999 99 899999995 7888765422 1 22233334555589999999 8
Q ss_pred CccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccC-CCCEEEEEEc-CCcE
Q 001391 83 VSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN-GNRSLAIGCS-DNSI 159 (1088)
Q Consensus 83 d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~-d~~~lasgs~-Dg~V 159 (1088)
+| .++++++ |++|++..++.+.-+. .-....+.-|.+.|.+++|....+ .+.+|++++. |..|
T Consensus 100 ~g----eliatgsndk~ik~l~fn~dt~~~----------~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i 165 (350)
T KOG0641|consen 100 CG----ELIATGSNDKTIKVLPFNADTCNA----------TGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI 165 (350)
T ss_pred cc----CeEEecCCCceEEEEecccccccc----------cCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence 88 7777765 8999999887543111 112234567999999999976322 3457787753 7778
Q ss_pred EEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEe
Q 001391 160 RVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1088)
Q Consensus 160 ~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 239 (1088)
.+=|-.+++....+.++.+-++ ++- +-++.++++|+.|.+|++||++.
T Consensus 166 y~tdc~~g~~~~a~sghtghil-aly----swn~~m~~sgsqdktirfwdlrv--------------------------- 213 (350)
T KOG0641|consen 166 YITDCGRGQGFHALSGHTGHIL-ALY----SWNGAMFASGSQDKTIRFWDLRV--------------------------- 213 (350)
T ss_pred EEeecCCCCcceeecCCcccEE-EEE----EecCcEEEccCCCceEEEEeeec---------------------------
Confidence 8888888988888887776543 222 23688999999999999999982
Q ss_pred cccccceeeeEEEe----C---CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceE
Q 001391 240 QDQQHTAVNLFRLV----G---HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312 (1088)
Q Consensus 240 ~~~~~~~~~~~~~~----g---h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~ 312 (1088)
...+..+. + -...|.+++..|.|++|++|-.|....+||++.+ +.++ .+..|...|.
T Consensus 214 ------~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~--------r~iq--~f~phsadir 277 (350)
T KOG0641|consen 214 ------NSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG--------RMIQ--RFHPHSADIR 277 (350)
T ss_pred ------cceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC--------ceee--eeCCCcccee
Confidence 22222221 1 1256999999999999999999999999999986 4454 7889999999
Q ss_pred EEEECC--CEEEEEeCCCcEEEEcCCCce-----eEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 313 DCCLTD--SFIITAGEDCTCRVWGSDGKQ-----LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 313 ~v~~~~--~~l~sg~~Dg~i~vWd~~~~~-----~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
|+.|++ .++++++.|..|++=|+.|.. +.....|..+ +-.+.|+|+.--+++.+.|.++.+|-++
T Consensus 278 ~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk-~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 278 CVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDK-AIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCc-eEEEEecCccceeeeccCcceEEEeccC
Confidence 999994 689999999999999996643 3345678875 7788999999889999999999999764
No 110
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.2e-18 Score=168.11 Aligned_cols=257 Identities=16% Similarity=0.267 Sum_probs=187.9
Q ss_pred CCcceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCC-----CCCCCCCCccccccceeeeccCCCCcEEE
Q 001391 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFEL-----SPNSQYQPETCVNLSLVQSLPRLSHWVFD 137 (1088)
Q Consensus 64 ~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~-----~~~~~~~~~~~~~~~~~~~l~~h~~~I~~ 137 (1088)
+.+.|..++|. |.| .+.++++ .+++||-....-. ....++.| ..+.+.-+.|.+.|+|
T Consensus 31 dsqairav~fh-------p~g----~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp-----~v~~kr~khhkgsiyc 94 (350)
T KOG0641|consen 31 DSQAIRAVAFH-------PAG----GLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPP-----SVLCKRNKHHKGSIYC 94 (350)
T ss_pred chhheeeEEec-------CCC----ceEEeccCCceEEEEccccccCcccccccccCCC-----eEEeeeccccCccEEE
Confidence 34579999999 777 5555554 6888887543211 00111111 2233445678899999
Q ss_pred EEEecccCCCCEEEEEEcCCcEEEEEcCCCceE-----EEeccCCceeEEEEeeecCCCCC-cEEEEEe-cCCeEEEEEe
Q 001391 138 VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII-----LEVHSPERCLLYSMKLWGDNLEA-LRIASGT-IYNEIIVWKV 210 (1088)
Q Consensus 138 v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~-----~~~~~~~~~~~~s~~~~~~s~~~-~~l~sg~-~dg~I~vwd~ 210 (1088)
.+|+| +|++||+|+.|.+|++.-++...+. .++..+.+ .+..++|...+..+ .+|++++ .|..|++-|.
T Consensus 95 ~~ws~---~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdg-tirdl~fld~~~s~~~il~s~gagdc~iy~tdc 170 (350)
T KOG0641|consen 95 TAWSP---CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDG-TIRDLAFLDDPESGGAILASAGAGDCKIYITDC 170 (350)
T ss_pred EEecC---ccCeEEecCCCceEEEEecccccccccCcceeeeecCC-ceeeeEEecCCCcCceEEEecCCCcceEEEeec
Confidence 99999 9999999999999999776544332 12222322 35566666554443 4555543 5677888888
Q ss_pred ccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcc
Q 001391 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (1088)
Q Consensus 211 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~ 290 (1088)
. .++.++.+.||++.|.++ ++=++-.+++|+.|.+||+||++-..+
T Consensus 171 ~---------------------------------~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~ 216 (350)
T KOG0641|consen 171 G---------------------------------RGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSC 216 (350)
T ss_pred C---------------------------------CCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccce
Confidence 7 788899999999999987 334678899999999999999987544
Q ss_pred cCCCCceeeeceeeec---cCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEE
Q 001391 291 KDSDSIEEVGSSVLYG---HNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLV 364 (1088)
Q Consensus 291 ~~~~~~~~i~~~~~~~---h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~ 364 (1088)
...+.. .+.+ ....|.+++.. +.+|++|-+|..+.+||+ .+++++.+..|.. .|.++.|+|...+++
T Consensus 217 -----v~~l~~-~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yll 289 (350)
T KOG0641|consen 217 -----VNTLDN-DFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLL 289 (350)
T ss_pred -----eeeccC-cccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEE
Confidence 222221 1111 12467888887 789999999999999999 6789999999998 599999999999999
Q ss_pred EEeCCCCEEEEEcCCCC
Q 001391 365 TAGFDSAIKVHQFQAFL 381 (1088)
Q Consensus 365 tg~~Dg~I~iwd~~~~~ 381 (1088)
|++.|..|++-|+++..
T Consensus 290 t~syd~~ikltdlqgdl 306 (350)
T KOG0641|consen 290 TCSYDMKIKLTDLQGDL 306 (350)
T ss_pred EecccceEEEeecccch
Confidence 99999999999997643
No 111
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2.2e-19 Score=182.23 Aligned_cols=275 Identities=17% Similarity=0.267 Sum_probs=195.9
Q ss_pred EEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEE
Q 001391 195 RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV 274 (1088)
Q Consensus 195 ~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~ 274 (1088)
.|++|+....|.-+++.-.+ ..... ....+..+++.+..|.++|++++. ++.+++||
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~-~~~~~--------------------s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSG 59 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEP-KGCTD--------------------SVKPTLKPLFAFSAHAGSITALAV--SGPYVASG 59 (362)
T ss_pred eEEEeeeeeEEEEEEeccCc-ccccc--------------------ccceeeeccccccccccceeEEEe--cceeEecc
Confidence 46778888888777776111 00000 000134567788899999999998 58999999
Q ss_pred ECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-C---CEEEEEeCCCcEEEEcC-CCceeEEEcccCCC
Q 001391 275 SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-D---SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR 349 (1088)
Q Consensus 275 s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~---~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~ 349 (1088)
|.|-+|+|||+.... .++ .+..|.+.|+++.|. + +.|++|++||.|.+|+. .-.++..+++|.++
T Consensus 60 ssDetI~IYDm~k~~--------qlg--~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~ 129 (362)
T KOG0294|consen 60 SSDETIHIYDMRKRK--------QLG--ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ 129 (362)
T ss_pred CCCCcEEEEeccchh--------hhc--ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc
Confidence 999999999999853 344 788899999999998 3 37999999999999999 67889999999995
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEc-CCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEec
Q 001391 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQF-QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLT 428 (1088)
Q Consensus 350 ~V~~l~~~~dg~~l~tg~~Dg~I~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s 428 (1088)
|+.++++|.+++.++.|.|+.+++|++ +++. ..+..+ . .....+.|+
T Consensus 130 -Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~----------------a~v~~L--~-------------~~at~v~w~ 177 (362)
T KOG0294|consen 130 -VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV----------------AFVLNL--K-------------NKATLVSWS 177 (362)
T ss_pred -cceeEecCCCceEEEEcCCceeeeehhhcCcc----------------ceeecc--C-------------CcceeeEEc
Confidence 999999999999999999999999999 3321 111111 1 123447899
Q ss_pred cCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCc
Q 001391 429 SEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP 508 (1088)
Q Consensus 429 ~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~ 508 (1088)
|+|..++......|-.+.+.+..... .+ .....+.++-+ ..+..+++|..++.|++||.+......
T Consensus 178 ~~Gd~F~v~~~~~i~i~q~d~A~v~~--~i---~~~~r~l~~~~---------l~~~~L~vG~d~~~i~~~D~ds~~~~~ 243 (362)
T KOG0294|consen 178 PQGDHFVVSGRNKIDIYQLDNASVFR--EI---ENPKRILCATF---------LDGSELLVGGDNEWISLKDTDSDTPLT 243 (362)
T ss_pred CCCCEEEEEeccEEEEEecccHhHhh--hh---hccccceeeee---------cCCceEEEecCCceEEEeccCCCccce
Confidence 99876665555555544433322111 11 11122444333 245789999999999999988643221
Q ss_pred ceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCC
Q 001391 509 QLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDP 555 (1088)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~ 555 (1088)
....+..++.+++....+++.+|+|++.||.|++||++..
T Consensus 244 -------~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 244 -------EFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred -------eeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 1223444566655556788999999999999999999855
No 112
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1.2e-19 Score=184.11 Aligned_cols=268 Identities=19% Similarity=0.173 Sum_probs=203.8
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECC
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd 96 (1088)
..|+.|.|+ |. ...|++++ ||++++||.....+...++. +.++.+.+|. ++. ..++..-|
T Consensus 14 d~IS~v~f~--~~----~~~LLvssWDgslrlYdv~~~~l~~~~~~--~~plL~c~F~-------d~~----~~~~G~~d 74 (323)
T KOG1036|consen 14 DGISSVKFS--PS----SSDLLVSSWDGSLRLYDVPANSLKLKFKH--GAPLLDCAFA-------DES----TIVTGGLD 74 (323)
T ss_pred hceeeEEEc--Cc----CCcEEEEeccCcEEEEeccchhhhhheec--CCceeeeecc-------CCc----eEEEeccC
Confidence 569999999 87 44555555 99999999998876666663 4479999998 442 34444449
Q ss_pred CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccC
Q 001391 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP 176 (1088)
Q Consensus 97 ~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~ 176 (1088)
+.|+.+|+.... ...+..|...|.||.+++ ....+++||.|++|++||.........+..+
T Consensus 75 g~vr~~Dln~~~----------------~~~igth~~~i~ci~~~~---~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~ 135 (323)
T KOG1036|consen 75 GQVRRYDLNTGN----------------EDQIGTHDEGIRCIEYSY---EVGCVISGSWDKTIKFWDPRNKVVVGTFDQG 135 (323)
T ss_pred ceEEEEEecCCc----------------ceeeccCCCceEEEEeec---cCCeEEEcccCccEEEEeccccccccccccC
Confidence 999999999654 234557999999999999 7788999999999999999886666655544
Q ss_pred CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCC
Q 001391 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (1088)
Q Consensus 177 ~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 256 (1088)
. .+|++.. .+..|+.|+.+..+.+||+++.+. ....+-..-+
T Consensus 136 k--kVy~~~v-----~g~~LvVg~~~r~v~iyDLRn~~~-------------------------------~~q~reS~lk 177 (323)
T KOG1036|consen 136 K--KVYCMDV-----SGNRLVVGTSDRKVLIYDLRNLDE-------------------------------PFQRRESSLK 177 (323)
T ss_pred c--eEEEEec-----cCCEEEEeecCceEEEEEcccccc-------------------------------hhhhccccce
Confidence 4 5777754 578999999999999999982110 0111122345
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccC---------cceEEEEECC--CEEEEEe
Q 001391 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN---------ARVWDCCLTD--SFIITAG 325 (1088)
Q Consensus 257 ~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~---------~~I~~v~~~~--~~l~sg~ 325 (1088)
-.+.+|++-|++.-++.+|-||.|.+=.++.... .+..+ +.+..|. -+|.+++|++ +.|+||+
T Consensus 178 yqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~-----~~skk-yaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgG 251 (323)
T KOG1036|consen 178 YQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEE-----AQSKK-YAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGG 251 (323)
T ss_pred eEEEEEEEecCCCceEEEeecceEEEEccCCchH-----Hhhhc-eeEEeeecccCCceEEEEeceeEeccccceEEecC
Confidence 6789999999988899999999988766555321 11112 3555553 2689999994 7899999
Q ss_pred CCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeC
Q 001391 326 EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF 368 (1088)
Q Consensus 326 ~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~ 368 (1088)
.||.|.+||+ +.+.+..+..... .|.+++|+.+|..||+++.
T Consensus 252 sDG~V~~Wd~~~rKrl~q~~~~~~-SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 252 SDGIVNIWDLFNRKRLKQLAKYET-SISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CCceEEEccCcchhhhhhccCCCC-ceEEEEeccCCCeEEEEec
Confidence 9999999999 7788888877765 6999999999999999874
No 113
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=6.6e-20 Score=204.96 Aligned_cols=266 Identities=18% Similarity=0.275 Sum_probs=213.6
Q ss_pred eEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc
Q 001391 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (1088)
Q Consensus 89 ~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~ 168 (1088)
..|+++-+..|.+|+-.... ...+..+ +.+.|+++.|++ +|.+||+|..+|.|.|||..+.+
T Consensus 189 n~laValg~~vylW~~~s~~-------------v~~l~~~--~~~~vtSv~ws~---~G~~LavG~~~g~v~iwD~~~~k 250 (484)
T KOG0305|consen 189 NVLAVALGQSVYLWSASSGS-------------VTELCSF--GEELVTSVKWSP---DGSHLAVGTSDGTVQIWDVKEQK 250 (484)
T ss_pred CeEEEEecceEEEEecCCCc-------------eEEeEec--CCCceEEEEECC---CCCEEEEeecCCeEEEEehhhcc
Confidence 58888889999999987543 2333333 278999999999 99999999999999999999998
Q ss_pred eEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee
Q 001391 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1088)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 248 (1088)
.+..+..++...+-++++ ++..+.+|+.++.|..+|++ ....
T Consensus 251 ~~~~~~~~h~~rvg~laW-----~~~~lssGsr~~~I~~~dvR---------------------------------~~~~ 292 (484)
T KOG0305|consen 251 KTRTLRGSHASRVGSLAW-----NSSVLSSGSRDGKILNHDVR---------------------------------ISQH 292 (484)
T ss_pred ccccccCCcCceeEEEec-----cCceEEEecCCCcEEEEEEe---------------------------------cchh
Confidence 888887755555555554 47789999999999999998 2222
Q ss_pred eE-EEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEE
Q 001391 249 LF-RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITA 324 (1088)
Q Consensus 249 ~~-~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg 324 (1088)
.. .+.+|...|.++.|++|+.++++|+.|+.+.|||.... ++. +.+..|.+.|.+++|+ .++||+|
T Consensus 293 ~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~--------~p~--~~~~~H~aAVKA~awcP~q~~lLAsG 362 (484)
T KOG0305|consen 293 VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP--------EPK--FTFTEHTAAVKALAWCPWQSGLLATG 362 (484)
T ss_pred hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc--------ccc--EEEeccceeeeEeeeCCCccCceEEc
Confidence 22 37899999999999999999999999999999999553 223 3889999999999998 5899987
Q ss_pred e--CCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEE--eCCCCEEEEEcCCCCCCcccCCccccccCCCcc
Q 001391 325 G--EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA--GFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTE 399 (1088)
Q Consensus 325 ~--~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg--~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 399 (1088)
+ .|+.|++||. +|+.+..+.... .|.+|.|++..+-|+++ -.++.|.||++...
T Consensus 363 GGs~D~~i~fwn~~~g~~i~~vdtgs--QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~------------------- 421 (484)
T KOG0305|consen 363 GGSADRCIKFWNTNTGARIDSVDTGS--QVCSLIWSKKYKELLSTHGYSENQITLWKYPSM------------------- 421 (484)
T ss_pred CCCcccEEEEEEcCCCcEecccccCC--ceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-------------------
Confidence 6 7899999999 888888876655 49999999988655543 35778999998431
Q ss_pred eEEeeeCCCccceeeccCCCCceEEEEeccCC-eEEEEecCCeEEEEEeccCC
Q 001391 400 IFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIATNHGYLYHTKLCDMD 451 (1088)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~-~ll~~t~~g~i~~~~~~~~~ 451 (1088)
..+..+.+|...|-.++++||| .+++++.|..+..|++++..
T Consensus 422 ----------~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 422 ----------KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDER 464 (484)
T ss_pred ----------ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCCC
Confidence 1233455677889999999998 55566788889988888753
No 114
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.86 E-value=5.5e-20 Score=215.21 Aligned_cols=320 Identities=18% Similarity=0.276 Sum_probs=224.4
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEe--cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGT--IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~--~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1088)
.|....++++.. .|++..+++|+ .|+.++||+.+ +... ....++.. -.+.+..+
T Consensus 10 ~H~~~~IfSIdv---~pdg~~~aTgGq~~d~~~~iW~~~-----~vl~---------------~~~~~~~~-l~k~l~~m 65 (942)
T KOG0973|consen 10 NHNEKSIFSIDV---HPDGVKFATGGQVLDGGIVIWSQD-----PVLD---------------EKEEKNEN-LPKHLCTM 65 (942)
T ss_pred ccCCeeEEEEEe---cCCceeEecCCccccccceeeccc-----cccc---------------hhhhhhcc-cchhheee
Confidence 344555888887 68899999999 89999999986 1110 00000000 24566778
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCc----------ccCCCCceeeeceeeeccCcceEEEEEC--CCE
Q 001391 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY----------WKDSDSIEEVGSSVLYGHNARVWDCCLT--DSF 320 (1088)
Q Consensus 253 ~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~----------~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~ 320 (1088)
..|.+.|.|+.|+|||++||+||+|+.|.+|...... ....+.-+.+ ..+.+|...|.+++|+ +.+
T Consensus 66 ~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~--~~l~~H~~DV~Dv~Wsp~~~~ 143 (942)
T KOG0973|consen 66 DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVV--SILRGHDSDVLDVNWSPDDSL 143 (942)
T ss_pred ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEE--EEEecCCCccceeccCCCccE
Confidence 8999999999999999999999999999999988410 0011112334 3889999999999999 689
Q ss_pred EEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC-CCCCcccCCccccccCCCc
Q 001391 321 IITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRT 398 (1088)
Q Consensus 321 l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~ 398 (1088)
+++++.|++|.+|+. +.+.+..+++|.+ .|-.+.|.|-|+++++-+.|++|++|+... ...+.+.++-
T Consensus 144 lvS~s~DnsViiwn~~tF~~~~vl~~H~s-~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf--------- 213 (942)
T KOG0973|consen 144 LVSVSLDNSVIIWNAKTFELLKVLRGHQS-LVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPF--------- 213 (942)
T ss_pred EEEecccceEEEEccccceeeeeeecccc-cccceEECCccCeeeeecCCceEEEEEcccceeeEeeccch---------
Confidence 999999999999999 7899999999999 699999999999999999999999999643 1111111100
Q ss_pred ceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEec--CCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCC
Q 001391 399 EIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN--HGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNE 476 (1088)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~--~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 476 (1088)
.+ ......++.+.|+|||+++++.+ ++....+.+.+.++.+...-+-||+ .++.++.+.|.-
T Consensus 214 -------~~--------~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~-~p~evvrFnP~l 277 (942)
T KOG0973|consen 214 -------EE--------SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHS-APVEVVRFNPKL 277 (942)
T ss_pred -------hh--------CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCC-CceEEEEeChHH
Confidence 00 01123678999999999998753 2333333344443333223345664 488888887653
Q ss_pred C----C-CcCCCCC----eEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeE
Q 001391 477 P----K-YPCGIDD----WVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRL 547 (1088)
Q Consensus 477 ~----~-~s~~~~~----~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i 547 (1088)
. . -.....+ .+|+|+.|+.|.||..... .|...... -....+.. ++++|||-.|++++.||+|
T Consensus 278 fe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~--RPl~vi~~----lf~~SI~D--msWspdG~~LfacS~DGtV 349 (942)
T KOG0973|consen 278 FERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP--RPLFVIHN----LFNKSIVD--MSWSPDGFSLFACSLDGTV 349 (942)
T ss_pred hccccccCCccCCCcceEEEEEecCCccEEEEecCCC--Cchhhhhh----hhcCceee--eeEcCCCCeEEEEecCCeE
Confidence 0 0 0011122 7999999999999987433 33222111 11222444 5689999999999999999
Q ss_pred EEEecCC
Q 001391 548 KLWQLCD 554 (1088)
Q Consensus 548 ~vwd~~~ 554 (1088)
.+..++.
T Consensus 350 ~~i~Fee 356 (942)
T KOG0973|consen 350 ALIHFEE 356 (942)
T ss_pred EEEEcch
Confidence 9998874
No 115
>PTZ00421 coronin; Provisional
Probab=99.86 E-value=2.7e-19 Score=208.44 Aligned_cols=226 Identities=13% Similarity=0.106 Sum_probs=164.9
Q ss_pred eeeeeEEEEEeccC-CCCCCCCEEEEEe-CCeEEEEECCCC-------eeEEEEeeeCCcceEEEEecccccccCCCccc
Q 001391 16 YLGEISALCFVHLP-SHLSSLPFLLAGS-GSQVLLYDLEAG-------TLIRPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (1088)
Q Consensus 16 ~~~~V~~v~fs~~p-d~~~~~~~laag~-d~~I~vwd~~tg-------~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~ 86 (1088)
|.++|.+++|+ | + +.+|++|+ |++|+|||+.++ ..+..+.+|.. .|.+++|+ |++.
T Consensus 74 H~~~V~~v~fs--P~d----~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~-~V~~l~f~-------P~~~- 138 (493)
T PTZ00421 74 QEGPIIDVAFN--PFD----PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTK-KVGIVSFH-------PSAM- 138 (493)
T ss_pred CCCCEEEEEEc--CCC----CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCC-cEEEEEeC-------cCCC-
Confidence 66889999999 9 6 67888887 799999999765 34667777665 79999999 5431
Q ss_pred eeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcC
Q 001391 87 VTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS 165 (1088)
Q Consensus 87 ~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~ 165 (1088)
.+|++ +.|++|+|||+.. .+.+..+.+|.+.|.+++|+| ++.+|++++.|++|++||++
T Consensus 139 --~iLaSgs~DgtVrIWDl~t---------------g~~~~~l~~h~~~V~sla~sp---dG~lLatgs~Dg~IrIwD~r 198 (493)
T PTZ00421 139 --NVLASAGADMVVNVWDVER---------------GKAVEVIKCHSDQITSLEWNL---DGSLLCTTSKDKKLNIIDPR 198 (493)
T ss_pred --CEEEEEeCCCEEEEEECCC---------------CeEEEEEcCCCCceEEEEEEC---CCCEEEEecCCCEEEEEECC
Confidence 35554 5599999999985 345677889999999999999 99999999999999999999
Q ss_pred CCceEEEeccCCceeEEEEeeecCCCCCcEEEEEe----cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecc
Q 001391 166 NSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT----IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1088)
Q Consensus 166 ~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~----~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 241 (1088)
+++.+.++..+.......+.+ .+++..+++++ .|+.|++||++.
T Consensus 199 sg~~v~tl~~H~~~~~~~~~w---~~~~~~ivt~G~s~s~Dr~VklWDlr~----------------------------- 246 (493)
T PTZ00421 199 DGTIVSSVEAHASAKSQRCLW---AKRKDLIITLGCSKSQQRQIMLWDTRK----------------------------- 246 (493)
T ss_pred CCcEEEEEecCCCCcceEEEE---cCCCCeEEEEecCCCCCCeEEEEeCCC-----------------------------
Confidence 999888887665433222222 23445555543 479999999971
Q ss_pred cccceeeeEEEeC-CCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCC
Q 001391 242 QQHTAVNLFRLVG-HEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDS 319 (1088)
Q Consensus 242 ~~~~~~~~~~~~g-h~~~V~~v~~sp~g~~l~s~s-~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~ 319 (1088)
...++..... +...+....|++++.++++++ .|+.|++||+.++.. +. .....+...+..++|.+.
T Consensus 247 ---~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~--------~~-~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 247 ---MASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL--------TF-CSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred ---CCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce--------EE-EeeccCCCCCcceEeccc
Confidence 1123333332 334566678999999998887 599999999988532 21 122334455667777654
Q ss_pred E
Q 001391 320 F 320 (1088)
Q Consensus 320 ~ 320 (1088)
.
T Consensus 315 ~ 315 (493)
T PTZ00421 315 W 315 (493)
T ss_pred c
Confidence 3
No 116
>PTZ00420 coronin; Provisional
Probab=99.86 E-value=5.2e-19 Score=206.53 Aligned_cols=218 Identities=15% Similarity=0.190 Sum_probs=161.4
Q ss_pred CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC-CCEEEEEEcCCcEEEEEcCCCc------
Q 001391 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG-NRSLAIGCSDNSIRVWDISNSS------ 168 (1088)
Q Consensus 96 d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d-~~~lasgs~Dg~V~iWd~~~~~------ 168 (1088)
++.|++|+... ...+..+.+|.+.|.+++|+| + +.+||+|+.|++|++||+.++.
T Consensus 53 ~gvI~L~~~~r---------------~~~v~~L~gH~~~V~~lafsP---~~~~lLASgS~DgtIrIWDi~t~~~~~~~i 114 (568)
T PTZ00420 53 IGAIRLENQMR---------------KPPVIKLKGHTSSILDLQFNP---CFSEILASGSEDLTIRVWEIPHNDESVKEI 114 (568)
T ss_pred eeEEEeeecCC---------------CceEEEEcCCCCCEEEEEEcC---CCCCEEEEEeCCCeEEEEECCCCCcccccc
Confidence 46788887653 346778899999999999999 6 6899999999999999997642
Q ss_pred --eEEEeccCCceeEEEEeeecCCCCCc-EEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccc
Q 001391 169 --IILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (1088)
Q Consensus 169 --~~~~~~~~~~~~~~s~~~~~~s~~~~-~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 245 (1088)
.+..+.+|. ..+.++++ +|++. ++++++.|++|++||+. .
T Consensus 115 ~~p~~~L~gH~-~~V~sVaf---~P~g~~iLaSgS~DgtIrIWDl~---------------------------------t 157 (568)
T PTZ00420 115 KDPQCILKGHK-KKISIIDW---NPMNYYIMCSSGFDSFVNIWDIE---------------------------------N 157 (568)
T ss_pred ccceEEeecCC-CcEEEEEE---CCCCCeEEEEEeCCCeEEEEECC---------------------------------C
Confidence 123344443 34566666 45555 56789999999999998 4
Q ss_pred eeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEE-----EEEC--C
Q 001391 246 AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD-----CCLT--D 318 (1088)
Q Consensus 246 ~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~-----v~~~--~ 318 (1088)
+..+..+. |...|.+++|+|+|.+|++++.|+.|+|||++++. .+. .+.+|.+.+.+ ..|+ +
T Consensus 158 g~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~--------~i~--tl~gH~g~~~s~~v~~~~fs~d~ 226 (568)
T PTZ00420 158 EKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE--------IAS--SFHIHDGGKNTKNIWIDGLGGDD 226 (568)
T ss_pred CcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc--------EEE--EEecccCCceeEEEEeeeEcCCC
Confidence 45555554 56789999999999999999999999999999853 333 67788765432 3343 5
Q ss_pred CEEEEEeCCC----cEEEEcCC--CceeEEEcccCCC-CeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 319 SFIITAGEDC----TCRVWGSD--GKQLKMIKEHIGR-GIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 319 ~~l~sg~~Dg----~i~vWd~~--~~~~~~~~~h~~~-~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
.+|++++.|+ +|++||+. ++++..+..+... .+......+++.++++|+.|++|++|++..
T Consensus 227 ~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 227 NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 7889888774 79999993 5666655433321 233333355688999999999999999953
No 117
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=3e-19 Score=181.31 Aligned_cols=279 Identities=19% Similarity=0.258 Sum_probs=206.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEE
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVW 333 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vW 333 (1088)
.++.|.+|.|+|.+..|+.++.||++++|++..... .....|..++.+++|. ...+++|+-||.|+.+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l-----------~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~ 80 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL-----------KLKFKHGAPLLDCAFADESTIVTGGLDGQVRRY 80 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh-----------hhheecCCceeeeeccCCceEEEeccCceEEEE
Confidence 367899999999999999999999999999988533 2566789999999998 5899999999999999
Q ss_pred cCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCcccee
Q 001391 334 GSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIR 413 (1088)
Q Consensus 334 d~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (1088)
|++......+..|.. +|.++.+++....+++||.|++|++||.+..... ..
T Consensus 81 Dln~~~~~~igth~~-~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~-----------------~~----------- 131 (323)
T KOG1036|consen 81 DLNTGNEDQIGTHDE-GIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV-----------------GT----------- 131 (323)
T ss_pred EecCCcceeeccCCC-ceEEEEeeccCCeEEEcccCccEEEEeccccccc-----------------cc-----------
Confidence 997777777888888 8999999998889999999999999999642110 00
Q ss_pred eccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCC
Q 001391 414 LTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGK 493 (1088)
Q Consensus 414 ~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~d 493 (1088)
.+ ..+.|.++.... +++++++.+..++.|++....... +.....-..++.|+++.|+. .-.+.++-|
T Consensus 132 -~d-~~kkVy~~~v~g-~~LvVg~~~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~pn~--------eGy~~sSie 198 (323)
T KOG1036|consen 132 -FD-QGKKVYCMDVSG-NRLVVGTSDRKVLIYDLRNLDEPF--QRRESSLKYQTRCVALVPNG--------EGYVVSSIE 198 (323)
T ss_pred -cc-cCceEEEEeccC-CEEEEeecCceEEEEEcccccchh--hhccccceeEEEEEEEecCC--------CceEEEeec
Confidence 00 112566776664 489999999999977776544322 22233345677888876643 668889999
Q ss_pred CCEEEEEEcCCCcCcceeeeeeeeccccc--eeeeE--EEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccce
Q 001391 494 GNMTIVRVVGDVHTPQLSFTFTWSAGIER--QLLGT--YWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNV 569 (1088)
Q Consensus 494 g~I~iw~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 569 (1088)
|+|.+=.++........++.++++..... .+.-. ...|+|--++|+||+.||.|.+||+...+. +
T Consensus 199 GRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKr-----------l 267 (323)
T KOG1036|consen 199 GRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKR-----------L 267 (323)
T ss_pred ceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhh-----------h
Confidence 99988666655334444555556654332 22111 135788888999999999999999875432 1
Q ss_pred eeeeeeccccCceEEEEEeeeCCCEEEEEcCC
Q 001391 570 FLVAEFSSCFGARIMCLDASFEDEVLFCGDLR 601 (1088)
Q Consensus 570 ~l~~~~~~~h~~~It~l~~spdg~~LatGs~d 601 (1088)
. +| ......|.+++|+.||..||+|+.-
T Consensus 268 ~---q~-~~~~~SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 268 K---QL-AKYETSISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred h---hc-cCCCCceEEEEeccCCCeEEEEech
Confidence 1 21 1335679999999999999999873
No 118
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2.8e-20 Score=182.12 Aligned_cols=249 Identities=19% Similarity=0.282 Sum_probs=187.9
Q ss_pred ceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d 146 (1088)
-||.+... =.|+ ++..+++|++|+|+.++... ..+++..|.||.++|+.++|... .-
T Consensus 13 ~IHda~lD-------yygk---rlATcsSD~tVkIf~v~~n~------------~s~ll~~L~Gh~GPVwqv~wahP-k~ 69 (299)
T KOG1332|consen 13 MIHDAQLD-------YYGK---RLATCSSDGTVKIFEVRNNG------------QSKLLAELTGHSGPVWKVAWAHP-KF 69 (299)
T ss_pred hhhHhhhh-------hhcc---eeeeecCCccEEEEEEcCCC------------CceeeeEecCCCCCeeEEeeccc-cc
Confidence 57777665 3342 56666779999999998654 24789999999999999999431 26
Q ss_pred CCEEEEEEcCCcEEEEEcCCCceEEEec-cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCc
Q 001391 147 NRSLAIGCSDNSIRVWDISNSSIILEVH-SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (1088)
Q Consensus 147 ~~~lasgs~Dg~V~iWd~~~~~~~~~~~-~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~ 225 (1088)
|.+||+++.||.|.||.-++++..+... ......+.++++.+ ..-|..|+.++.||.|.|.+.+...
T Consensus 70 G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wap-heygl~LacasSDG~vsvl~~~~~g----------- 137 (299)
T KOG1332|consen 70 GTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAP-HEYGLLLACASSDGKVSVLTYDSSG----------- 137 (299)
T ss_pred CcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccc-cccceEEEEeeCCCcEEEEEEcCCC-----------
Confidence 7899999999999999998885433222 11223344555433 3457899999999999999988210
Q ss_pred cCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCC---C-----------CEEEEEECCCcEEEEEcCCCccc
Q 001391 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC---G-----------SKLVSVSDDRSARIWEVRAEYWK 291 (1088)
Q Consensus 226 s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~---g-----------~~l~s~s~Dg~v~iWd~~~~~~~ 291 (1088)
....-.....|+-.|++++|.|. | ++|+||+.|..|+||+....+.
T Consensus 138 -------------------~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w- 197 (299)
T KOG1332|consen 138 -------------------GWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSW- 197 (299)
T ss_pred -------------------CccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcch-
Confidence 01112234689999999999985 4 5799999999999999988633
Q ss_pred CCCCceeeeceeeeccCcceEEEEECC------CEEEEEeCCCcEEEEcCCC--c--eeEEEcccCCCCeEEEEEcCCCC
Q 001391 292 DSDSIEEVGSSVLYGHNARVWDCCLTD------SFIITAGEDCTCRVWGSDG--K--QLKMIKEHIGRGIWRCLYDSLSS 361 (1088)
Q Consensus 292 ~~~~~~~i~~~~~~~h~~~I~~v~~~~------~~l~sg~~Dg~i~vWd~~~--~--~~~~~~~h~~~~V~~l~~~~dg~ 361 (1088)
... .++.+|...|.+++|.| .+|+++++||++.||..+. + ....++.... .+|++.|+..|+
T Consensus 198 ------~~e-~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~-~~w~vSWS~sGn 269 (299)
T KOG1332|consen 198 ------KLE-RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPD-VVWRVSWSLSGN 269 (299)
T ss_pred ------hhh-hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCc-ceEEEEEecccc
Confidence 122 26899999999999973 5799999999999999832 1 1223344444 799999999999
Q ss_pred EEEEEeCCCCEEEEEcC
Q 001391 362 LLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 362 ~l~tg~~Dg~I~iwd~~ 378 (1088)
.|+.++.|+.|.+|..+
T Consensus 270 ~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 270 ILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EEEEecCCcEEEEEEeC
Confidence 99999999999999763
No 119
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.6e-18 Score=177.11 Aligned_cols=288 Identities=12% Similarity=0.130 Sum_probs=205.8
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEe-
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT- 200 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~- 200 (1088)
++..+.+....+.|.++.|++ +|.+|++++.|.+++|||..+++.+.++..+... +-.++|. .....++.++
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~---~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG-~~~~~Ft---h~~~~~i~sSt 76 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSD---DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYG-VDLACFT---HHSNTVIHSST 76 (311)
T ss_pred cccccccccCCCceeEEEecC---CCCEEEEecCCCeEEEEEcCCCceeeEeeccccc-ccEEEEe---cCCceEEEccC
Confidence 444555666778999999999 9999999999999999999999999988765432 1122332 2223333333
Q ss_pred -cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCc
Q 001391 201 -IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRS 279 (1088)
Q Consensus 201 -~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~ 279 (1088)
.|.+|+.-++. +.+.++.|.||...|.+++.+|-+..++|++.|++
T Consensus 77 k~d~tIryLsl~---------------------------------dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~t 123 (311)
T KOG1446|consen 77 KEDDTIRYLSLH---------------------------------DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKT 123 (311)
T ss_pred CCCCceEEEEee---------------------------------cCceEEEcCCCCceEEEEEecCCCCeEEecccCCe
Confidence 48899999998 88899999999999999999999999999999999
Q ss_pred EEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC---CCceeEEEccc---CCCCe
Q 001391 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS---DGKQLKMIKEH---IGRGI 351 (1088)
Q Consensus 280 v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~---~~~~~~~~~~h---~~~~V 351 (1088)
||+||++..++ .. .+ +...-..++|. |-++|++.....|++||+ +..+..++.-. .. ..
T Consensus 124 vrLWDlR~~~c--------qg--~l--~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~-ew 190 (311)
T KOG1446|consen 124 VRLWDLRVKKC--------QG--LL--NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEA-EW 190 (311)
T ss_pred EEeeEecCCCC--------ce--EE--ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCcc-ce
Confidence 99999997654 21 11 11222346676 567777777779999998 45566665433 33 48
Q ss_pred EEEEEcCCCCEEEEEeCCCCEEEEEc-CCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccC
Q 001391 352 WRCLYDSLSSLLVTAGFDSAIKVHQF-QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSE 430 (1088)
Q Consensus 352 ~~l~~~~dg~~l~tg~~Dg~I~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 430 (1088)
..+.|+|||++|+.+...+.+.+.|. ++..+.++.++... ...--..+|+||
T Consensus 191 ~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~---------------------------~~~~~~a~ftPd 243 (311)
T KOG1446|consen 191 TDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNA---------------------------GNLPLSATFTPD 243 (311)
T ss_pred eeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCC---------------------------CCcceeEEECCC
Confidence 89999999999999999999999997 55544444433311 011246679999
Q ss_pred CeEEEEe-cCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEc
Q 001391 431 DTLYIAT-NHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVV 502 (1088)
Q Consensus 431 ~~ll~~t-~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~ 502 (1088)
+++++++ .+|+|+.|++... .-.....+....++.++.+.|. .....+.+..+.+|-.+
T Consensus 244 s~Fvl~gs~dg~i~vw~~~tg---~~v~~~~~~~~~~~~~~~fnP~----------~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 244 SKFVLSGSDDGTIHVWNLETG---KKVAVLRGPNGGPVSCVRFNPR----------YAMFVSASSNLVFWLPD 303 (311)
T ss_pred CcEEEEecCCCcEEEEEcCCC---cEeeEecCCCCCCccccccCCc----------eeeeeecCceEEEEecc
Confidence 9877766 4599997776333 3223345555677777776543 34444556788888554
No 120
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.85 E-value=3.3e-19 Score=187.71 Aligned_cols=280 Identities=13% Similarity=0.183 Sum_probs=214.7
Q ss_pred CcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEecc
Q 001391 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~ 212 (1088)
..|.++...| ....++||+.|..+.++|....+.+..++++...+. ++.+ .++...+++++.|-.|+||...
T Consensus 220 pgi~ald~~~---s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~-~v~~---~~~~~~v~~aSad~~i~vws~~- 291 (506)
T KOG0289|consen 220 PGITALDIIP---SSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKIT-SVKF---HKDLDTVITASADEIIRVWSVP- 291 (506)
T ss_pred CCeeEEeecC---CCCcceecCCCCceEEEecchhhhhhhccCcceEEE-EEEe---ccchhheeecCCcceEEeeccc-
Confidence 4688888888 667899999999999999999999999998877544 4444 5778899999999999999987
Q ss_pred CccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccC
Q 001391 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292 (1088)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~ 292 (1088)
..........|+.+|+.+..+|.|.||++++.|++..+.|++++.+
T Consensus 292 --------------------------------~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~-- 337 (506)
T KOG0289|consen 292 --------------------------------LSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ-- 337 (506)
T ss_pred --------------------------------cccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE--
Confidence 3334455678999999999999999999999999999999999754
Q ss_pred CCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCC
Q 001391 293 SDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (1088)
Q Consensus 293 ~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~D 369 (1088)
+.........-.+++.+|+ +.+|.+|..||.+++||+ ++..+..|.+|.+ +|..+.|+.+|-+|+++..|
T Consensus 338 ------lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add 410 (506)
T KOG0289|consen 338 ------LTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADD 410 (506)
T ss_pred ------EEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecC
Confidence 2101111233458999999 567889999999999999 7778889999999 79999999999999999999
Q ss_pred CCEEEEEcCC-CCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEe-cCCeEEEEEe
Q 001391 370 SAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT-NHGYLYHTKL 447 (1088)
Q Consensus 370 g~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t-~~g~i~~~~~ 447 (1088)
+.|++||++. ...+++. .++ ...+.++.|.+.|.+++.. ++=++| +
T Consensus 411 ~~V~lwDLRKl~n~kt~~------------------l~~-----------~~~v~s~~fD~SGt~L~~~g~~l~Vy---~ 458 (506)
T KOG0289|consen 411 GSVKLWDLRKLKNFKTIQ------------------LDE-----------KKEVNSLSFDQSGTYLGIAGSDLQVY---I 458 (506)
T ss_pred CeEEEEEehhhcccceee------------------ccc-----------cccceeEEEcCCCCeEEeecceeEEE---E
Confidence 9999999964 2122111 111 1258899999988777765 233344 4
Q ss_pred ccCCcceeEEeeeecCCc-ceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEE
Q 001391 448 CDMDSVNWNKILQVSEGM-PIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRV 501 (1088)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~-~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~ 501 (1088)
....+..|..+...+... ...++.+- ....++++++.|..++++.+
T Consensus 459 ~~k~~k~W~~~~~~~~~sg~st~v~Fg--------~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 459 CKKKTKSWTEIKELADHSGLSTGVRFG--------EHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred Eecccccceeeehhhhcccccceeeec--------ccceEEeeccchhheEEeec
Confidence 455566787776555322 34444442 23478999999998888754
No 121
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.84 E-value=1.1e-19 Score=193.59 Aligned_cols=259 Identities=17% Similarity=0.261 Sum_probs=194.3
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC--e--------eEEEEeeeCCcceEEEEecccccccCCCc
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG--T--------LIRPFQVFHGIRLHGISCNFINCTEGSVS 84 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg--~--------~~~~~~~~~~~~V~~i~~s~~~~~~~~d~ 84 (1088)
|.|.|.-+.+- |. ...++|+++ ++.|.|||..+- . .-.++.+|++ .-.++.|++. ..|
T Consensus 123 h~gEVnRaRym--PQ---np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~-eg~glsWn~~-----~~g 191 (422)
T KOG0264|consen 123 HDGEVNRARYM--PQ---NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEK-EGYGLSWNRQ-----QEG 191 (422)
T ss_pred CCccchhhhhC--CC---CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecc-cccccccccc-----cce
Confidence 67888888887 76 235556555 599999998642 1 1126777776 3588999854 444
Q ss_pred cceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEc
Q 001391 85 TRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDI 164 (1088)
Q Consensus 85 ~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~ 164 (1088)
.+|.++.|++|++||+........ .......+.+|.+.|.+++|+|. +..++++++.|+.+.|||+
T Consensus 192 ----~Lls~~~d~~i~lwdi~~~~~~~~--------~~~p~~~~~~h~~~VeDV~~h~~--h~~lF~sv~dd~~L~iwD~ 257 (422)
T KOG0264|consen 192 ----TLLSGSDDHTICLWDINAESKEDK--------VVDPKTIFSGHEDVVEDVAWHPL--HEDLFGSVGDDGKLMIWDT 257 (422)
T ss_pred ----eEeeccCCCcEEEEeccccccCCc--------cccceEEeecCCcceehhhcccc--chhhheeecCCCeEEEEEc
Confidence 556666699999999986442111 24566778899999999999993 5568999999999999999
Q ss_pred CC--CceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccc
Q 001391 165 SN--SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (1088)
Q Consensus 165 ~~--~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 242 (1088)
++ .+.......+. ..+.+++|-++ ++..||+|+.|++|.+||++
T Consensus 258 R~~~~~~~~~~~ah~-~~vn~~~fnp~--~~~ilAT~S~D~tV~LwDlR------------------------------- 303 (422)
T KOG0264|consen 258 RSNTSKPSHSVKAHS-AEVNCVAFNPF--NEFILATGSADKTVALWDLR------------------------------- 303 (422)
T ss_pred CCCCCCCcccccccC-CceeEEEeCCC--CCceEEeccCCCcEEEeech-------------------------------
Confidence 95 33333333333 34677777443 47899999999999999998
Q ss_pred ccceeeeEEEeCCCCCEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCcccC------CCCceeeeceeeeccCcceEEEE
Q 001391 243 QHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKD------SDSIEEVGSSVLYGHNARVWDCC 315 (1088)
Q Consensus 243 ~~~~~~~~~~~gh~~~V~~v~~sp~g-~~l~s~s~Dg~v~iWd~~~~~~~~------~~~~~~i~~~~~~~h~~~I~~v~ 315 (1088)
.-..+++.+.+|++.|++|.|+|.. ..|+|++.|+.+.+||+..-.... ..+.+.+ +.-.||...|..+.
T Consensus 304 -nL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEll--F~HgGH~~kV~Dfs 380 (422)
T KOG0264|consen 304 -NLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELL--FIHGGHTAKVSDFS 380 (422)
T ss_pred -hcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCccee--EEecCccccccccc
Confidence 1345889999999999999999976 568899999999999997643211 0112222 46779999999999
Q ss_pred EC---CCEEEEEeCCCcEEEEcCC
Q 001391 316 LT---DSFIITAGEDCTCRVWGSD 336 (1088)
Q Consensus 316 ~~---~~~l~sg~~Dg~i~vWd~~ 336 (1088)
|+ +-.|+|.++|+.+.||...
T Consensus 381 Wnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 381 WNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCCCCCeEEEEecCCceEEEeecc
Confidence 98 5689999999999999974
No 122
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.84 E-value=1.3e-19 Score=193.11 Aligned_cols=279 Identities=13% Similarity=0.224 Sum_probs=220.1
Q ss_pred ceeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCC---eeEEEEeee-CCcceEEEEecccccccCCCccceeeE
Q 001391 15 QYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG---TLIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFE 90 (1088)
Q Consensus 15 ~~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg---~~~~~~~~~-~~~~V~~i~~s~~~~~~~~d~~~~~~~ 90 (1088)
.|-.-|.++++| .. .+.+.+|.-|-|+|||+... ..+..+... .++-|..+..+ ||| +.
T Consensus 417 ~HGEvVcAvtIS--~~----trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~-------pdg----rt 479 (705)
T KOG0639|consen 417 AHGEVVCAVTIS--NP----TRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLL-------PDG----RT 479 (705)
T ss_pred ccCcEEEEEEec--CC----cceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEec-------CCC----ce
Confidence 365568899999 55 79999999999999998643 234444432 45568888888 888 66
Q ss_pred EEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce
Q 001391 91 VALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1088)
Q Consensus 91 la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~ 169 (1088)
|+++| ..++.|||+..+. ...-..+....-..++++.+| |.+..+++..||.|.|||+.+...
T Consensus 480 LivGGeastlsiWDLAapT-------------prikaeltssapaCyALa~sp---DakvcFsccsdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 480 LIVGGEASTLSIWDLAAPT-------------PRIKAELTSSAPACYALAISP---DAKVCFSCCSDGNIAVWDLHNQTL 543 (705)
T ss_pred EEeccccceeeeeeccCCC-------------cchhhhcCCcchhhhhhhcCC---ccceeeeeccCCcEEEEEccccee
Confidence 66666 6899999998654 222223333335678899999 999999999999999999999999
Q ss_pred EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeee
Q 001391 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (1088)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 249 (1088)
+..++++... +.++.+ +++|..|-+|+-|++|+.||++ +++.+
T Consensus 544 VrqfqGhtDG-ascIdi---s~dGtklWTGGlDntvRcWDlr---------------------------------egrql 586 (705)
T KOG0639|consen 544 VRQFQGHTDG-ASCIDI---SKDGTKLWTGGLDNTVRCWDLR---------------------------------EGRQL 586 (705)
T ss_pred eecccCCCCC-ceeEEe---cCCCceeecCCCccceeehhhh---------------------------------hhhhh
Confidence 9999987653 223333 6789999999999999999998 33333
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC
Q 001391 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED 327 (1088)
Q Consensus 250 ~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D 327 (1088)
+.. .....|+++.++|++.+++.|-..+.+.+-....... +.+..|..-|.++.|. +..+++.+.|
T Consensus 587 qqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-----------yqlhlheScVLSlKFa~cGkwfvStGkD 654 (705)
T KOG0639|consen 587 QQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-----------YQLHLHESCVLSLKFAYCGKWFVSTGKD 654 (705)
T ss_pred hhh-hhhhhheecccCCCccceeeecccCcEEEEecCCccc-----------eeecccccEEEEEEecccCceeeecCch
Confidence 221 2347899999999999999999999998877766432 4677899999999998 8999999999
Q ss_pred CcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 328 g~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
..+..|.. -|..+...+... +|.++.++.|.++|+||+.|....+|.+
T Consensus 655 nlLnawrtPyGasiFqskE~S--sVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 655 NLLNAWRTPYGASIFQSKESS--SVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred hhhhhccCccccceeeccccC--cceeeeeccCceEEEecCCCcceEEEEE
Confidence 99999998 676666665544 6999999999999999999998888865
No 123
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=4.7e-19 Score=188.92 Aligned_cols=274 Identities=15% Similarity=0.194 Sum_probs=204.3
Q ss_pred CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCcccccc
Q 001391 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNL 122 (1088)
Q Consensus 44 ~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~ 122 (1088)
..+.+||+.||..+.++++.....-+++..-- +. .++++ .+...+.+|.+....
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~------~~-----yllsaq~~rp~l~vw~i~k~~-------------- 72 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTALN------NE-----YLLSAQLKRPLLHVWEILKKD-------------- 72 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhhc------hh-----heeeecccCccccccccCchh--------------
Confidence 67999999999999888874222233333320 21 33333 446789999988532
Q ss_pred ceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecC
Q 001391 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (1088)
Q Consensus 123 ~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d 202 (1088)
.+....--.+.|.+++-+| +|.+|+.|+..+.|++|.+.+|..+..+..|-. .+..+.| +.|+.+|++|+.|
T Consensus 73 -~~~q~~v~Pg~v~al~s~n---~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ-~ITcL~f---s~dgs~iiTgskD 144 (476)
T KOG0646|consen 73 -QVVQYIVLPGPVHALASSN---LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQ-SITCLKF---SDDGSHIITGSKD 144 (476)
T ss_pred -hhhhhcccccceeeeecCC---CceEEEeecccCcEEEEEeccccHHHHHHhhcc-ceeEEEE---eCCCcEEEecCCC
Confidence 1112233457899999999 999999888999999999999998877755433 3445555 6789999999999
Q ss_pred CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCC--CEEEEEECCCcE
Q 001391 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG--SKLVSVSDDRSA 280 (1088)
Q Consensus 203 g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g--~~l~s~s~Dg~v 280 (1088)
|.|.+|.+.+ ..+++ .....++++.+..|+-+|+.+...+.| .+++|+|.|+++
T Consensus 145 g~V~vW~l~~-----------lv~a~-------------~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~ 200 (476)
T KOG0646|consen 145 GAVLVWLLTD-----------LVSAD-------------NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTI 200 (476)
T ss_pred ccEEEEEEEe-----------ecccc-------------cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceE
Confidence 9999999861 00111 011467889999999999999887654 689999999999
Q ss_pred EEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC---C--------------CceeE
Q 001391 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS---D--------------GKQLK 341 (1088)
Q Consensus 281 ~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~---~--------------~~~~~ 341 (1088)
++||+..+.. + ....-+..+.+++.+ +..++.|+++|.|.+.++ . +..+.
T Consensus 201 k~wdlS~g~L--------L---lti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~ 269 (476)
T KOG0646|consen 201 KLWDLSLGVL--------L---LTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQIN 269 (476)
T ss_pred EEEEecccee--------e---EEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceee
Confidence 9999999643 2 222234678888888 689999999999998887 2 12455
Q ss_pred EEcccCC-CCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC-CCCCcc
Q 001391 342 MIKEHIG-RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSL 385 (1088)
Q Consensus 342 ~~~~h~~-~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~-~~~~~~ 385 (1088)
.+.+|.+ .+|++++++-||.+|++|+.||.|+|||+.. ++++++
T Consensus 270 ~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 270 VLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred eeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence 6778877 5799999999999999999999999999944 444443
No 124
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=4.8e-17 Score=186.67 Aligned_cols=477 Identities=14% Similarity=0.113 Sum_probs=293.8
Q ss_pred CCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEE
Q 001391 82 SVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRV 161 (1088)
Q Consensus 82 ~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~i 161 (1088)
+|+ ..+.+.-+..|.||...+ ..++..+.+|...+..+.+.|....-.++.+++.||.|++
T Consensus 26 nD~----k~l~~~~~~~V~VyS~~T---------------g~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~v 86 (792)
T KOG1963|consen 26 NDA----KFLFLCTGNFVKVYSTAT---------------GECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRV 86 (792)
T ss_pred cCC----cEEEEeeCCEEEEEecch---------------HhhhhhcccccCccceeeecCCCccceEEEEEecCccEEE
Confidence 777 667777778999999886 4577799999999999999994333357889999999999
Q ss_pred EEcCCCceEEEeccCCc--eeEEEEeeecCCCCCcEEEEEecCCeEE-EEEeccCccccCCCCCCCccCCCCCCCCceeE
Q 001391 162 WDISNSSIILEVHSPER--CLLYSMKLWGDNLEALRIASGTIYNEII-VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (1088)
Q Consensus 162 Wd~~~~~~~~~~~~~~~--~~~~s~~~~~~s~~~~~l~sg~~dg~I~-vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 238 (1088)
||...+..+.++..... ...+..++... ...+..+..+-.+. -.... ...+ ...+.
T Consensus 87 wd~~~~~Llkt~~~~~~v~~~~~~~~~a~~---s~~~~~s~~~~~~~~~~s~~---~~~q---------------~~~~~ 145 (792)
T KOG1963|consen 87 WDWSDGELLKTFDNNLPVHALVYKPAQADI---SANVYVSVEDYSILTTFSKK---LSKQ---------------SSRFV 145 (792)
T ss_pred ecCCCcEEEEEEecCCceeEEEechhHhCc---cceeEeecccceeeeecccc---cccc---------------eeeeE
Confidence 99999999887764332 22332222111 11111221111111 11110 0000 00000
Q ss_pred ecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-
Q 001391 239 LQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT- 317 (1088)
Q Consensus 239 ~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~- 317 (1088)
+-.. .......+.+|.. -..|.+++.|.+....-. ..+.+|+...+.. ..... -....|...+++.+++
T Consensus 146 ~~t~--~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~-~~~~~~~v~~~~~-----~~~~~-~~~~~Htf~~t~~~~sp 215 (792)
T KOG1963|consen 146 LATF--DSAKGDFLKEHQE-PKSIVDNNSGEFKGIVHM-CKIHIYFVPKHTK-----HTSSR-DITVHHTFNITCVALSP 215 (792)
T ss_pred eeec--cccchhhhhhhcC-CccEEEcCCceEEEEEEe-eeEEEEEecccce-----eeccc-hhhhhhcccceeEEecc
Confidence 0000 0111111223322 456778888877666544 4688898877431 11111 1334577778899988
Q ss_pred -CCEEEEEeCCCcEEEEcCCC-----ceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccc
Q 001391 318 -DSFIITAGEDCTCRVWGSDG-----KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEA 391 (1088)
Q Consensus 318 -~~~l~sg~~Dg~i~vWd~~~-----~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~ 391 (1088)
+.++++|..||.|.+|.--+ .....+.-|.. .|.+++|+++|.+|++||..|.+.+|.+.+.. +.+
T Consensus 216 n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~-~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqf------ 287 (792)
T KOG1963|consen 216 NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHD-EVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQF------ 287 (792)
T ss_pred ccceEEEeccCCcEEEEeccccccccccceEEEeccc-ccceeEEecCCceEeecccceEEEEEeecCCC-ccc------
Confidence 68999999999999998632 33466788888 69999999999999999999999999996532 111
Q ss_pred cccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEE-EEecCCeEEEEEeccCCcceeEEeeeecC-------
Q 001391 392 KEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLY-IATNHGYLYHTKLCDMDSVNWNKILQVSE------- 463 (1088)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll-~~t~~g~i~~~~~~~~~~~~~~~~~~~~~------- 463 (1088)
+..-+.+|..+.++||+.++ +...|..|+.++..+..... ..++-.
T Consensus 288 -----------------------LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~---tIsgi~~~~~~~k 341 (792)
T KOG1963|consen 288 -----------------------LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKS---TISGIKPPTPSTK 341 (792)
T ss_pred -----------------------ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhh---hccCccCCCcccc
Confidence 11123579999999998554 45678888877665432211 001100
Q ss_pred ---CcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeecccc--ceeeeEEEeecCCCeEE
Q 001391 464 ---GMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIE--RQLLGTYWCKSLGHRFI 538 (1088)
Q Consensus 464 ---~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~L 538 (1088)
..-...+.+.+ ..+.++..+..|.|++||+.+.....+......-..... ..+...-.+.+..|.++
T Consensus 342 ~~~~~l~t~~~idp--------r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~m 413 (792)
T KOG1963|consen 342 TRPQSLTTGVSIDP--------RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWM 413 (792)
T ss_pred ccccccceeEEEcC--------CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEE
Confidence 11112222322 346788899999999999988766554443322222222 12222222344568888
Q ss_pred EEEC--------CCC--eEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeC--CCEEEEEcCCCcEEE
Q 001391 539 FTAD--------PKG--RLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFE--DEVLFCGDLRGNLVL 606 (1088)
Q Consensus 539 ~s~~--------~dg--~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spd--g~~LatGs~dg~I~I 606 (1088)
+|.. .|| .++.|...... + ...+......+|...+.+..+.+. ....++++.||.++|
T Consensus 414 aT~E~~~d~~~~~~~e~~LKFW~~n~~~--k--------t~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~Ki 483 (792)
T KOG1963|consen 414 ATLEARIDKFNFFDGEVSLKFWQYNPNS--K--------TFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKI 483 (792)
T ss_pred EEeeeeehhhhccCceEEEEEEEEcCCc--c--------eeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEE
Confidence 8764 222 56788766432 1 233444445688887777776643 337899999999999
Q ss_pred EeCCcccccccccccccccCcceeecccc--cccceeEEEEEeccCCceEEEEecCCCeEEEEEeec
Q 001391 607 FPLLRDLLNDKSVALHVEVSPLNYFKGAH--GISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDK 671 (1088)
Q Consensus 607 w~~~~~~~~~~~~~~~~~l~~~~~~~g~h--g~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~~~ 671 (1088)
|-+..... ..+......++..+ .+..+++.+|+ .| ..+++.|.|++|.+||.+.
T Consensus 484 W~~~~~~n-------~~k~~s~W~c~~i~sy~k~~i~a~~fs---~d-Gslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 484 WVFTDDSN-------IYKKSSNWTCKAIGSYHKTPITALCFS---QD-GSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred EEEecccc-------cCcCccceEEeeeeccccCcccchhhc---CC-CcEEEEecCCEEEEecCCC
Confidence 99865321 11233333443322 13678888888 45 4788999999999999877
No 125
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.82 E-value=5.4e-19 Score=188.53 Aligned_cols=238 Identities=17% Similarity=0.267 Sum_probs=193.3
Q ss_pred CCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccC--CCCcEEEEEEe
Q 001391 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR--LSHWVFDVCFL 141 (1088)
Q Consensus 64 ~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~--h~~~I~~v~f~ 141 (1088)
|+.-|..+.+| ... +.+.++|.+.|+|||+..... ...+..|.. -...|.++.++
T Consensus 418 HGEvVcAvtIS-------~~t----rhVyTgGkgcVKVWdis~pg~------------k~PvsqLdcl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 418 HGEVVCAVTIS-------NPT----RHVYTGGKGCVKVWDISQPGN------------KSPVSQLDCLNRDNYIRSCKLL 474 (705)
T ss_pred cCcEEEEEEec-------CCc----ceeEecCCCeEEEeeccCCCC------------CCccccccccCcccceeeeEec
Confidence 45457888888 443 788889999999999985431 223333332 34679999999
Q ss_pred cccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccC-CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCC
Q 001391 142 KVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP-ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLN 220 (1088)
Q Consensus 142 p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~-~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~ 220 (1088)
| ||+.|++|+.-.++.|||+.........+.. ....+|.++. ++|.++.+++..||.|.|||+.
T Consensus 475 p---dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~---spDakvcFsccsdGnI~vwDLh--------- 539 (705)
T KOG0639|consen 475 P---DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI---SPDAKVCFSCCSDGNIAVWDLH--------- 539 (705)
T ss_pred C---CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhc---CCccceeeeeccCCcEEEEEcc---------
Confidence 9 9999999999999999999866543332211 1223455554 7899999999999999999999
Q ss_pred CCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeee
Q 001391 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG 300 (1088)
Q Consensus 221 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~ 300 (1088)
....++.|+||.+.+.||..++||..|-||+-|.+||.||+++++.
T Consensus 540 ------------------------nq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrq---------- 585 (705)
T KOG0639|consen 540 ------------------------NQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ---------- 585 (705)
T ss_pred ------------------------cceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhh----------
Confidence 7788999999999999999999999999999999999999998743
Q ss_pred ceeeecc--CcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 001391 301 SSVLYGH--NARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 301 ~~~~~~h--~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd 376 (1088)
+..| ...|.++.+. +..++.|-+++.+-|-..++.....+..|.. .|.++.|.+-|+++++.|.|+-+..|.
T Consensus 586 ---lqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheS-cVLSlKFa~cGkwfvStGkDnlLnawr 661 (705)
T KOG0639|consen 586 ---LQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWR 661 (705)
T ss_pred ---hhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeeccccc-EEEEEEecccCceeeecCchhhhhhcc
Confidence 2223 3567777776 6899999999999998888888888888888 799999999999999999999999997
Q ss_pred c
Q 001391 377 F 377 (1088)
Q Consensus 377 ~ 377 (1088)
.
T Consensus 662 t 662 (705)
T KOG0639|consen 662 T 662 (705)
T ss_pred C
Confidence 6
No 126
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=4.7e-19 Score=188.89 Aligned_cols=256 Identities=17% Similarity=0.225 Sum_probs=194.6
Q ss_pred CceEEecCCCc-------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEeccc
Q 001391 5 DLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFI 76 (1088)
Q Consensus 5 ~i~iWdl~~g~-------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~ 76 (1088)
-+.+|.+.+.. ..|+|.|++-+ |+ |.||++|+ .+.|++|.+.+|.++..+..|-. .|.++.|+
T Consensus 62 ~l~vw~i~k~~~~~q~~v~Pg~v~al~s~--n~----G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ-~ITcL~fs-- 132 (476)
T KOG0646|consen 62 LLHVWEILKKDQVVQYIVLPGPVHALASS--NL----GYFLLAGTISGNLYLWELSSGILLNVLSAHYQ-SITCLKFS-- 132 (476)
T ss_pred cccccccCchhhhhhhcccccceeeeecC--CC----ceEEEeecccCcEEEEEeccccHHHHHHhhcc-ceeEEEEe--
Confidence 36788877665 46889999999 98 89999996 79999999999999999977544 79999999
Q ss_pred ccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc
Q 001391 77 NCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS 155 (1088)
Q Consensus 77 ~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~ 155 (1088)
.|| ..+.++ .|+.|.+|.+..-- +++.....++++.+..|.-.|+++...+. +...+|+|+|.
T Consensus 133 -----~dg----s~iiTgskDg~V~vW~l~~lv------~a~~~~~~~p~~~f~~HtlsITDl~ig~G-g~~~rl~TaS~ 196 (476)
T KOG0646|consen 133 -----DDG----SHIITGSKDGAVLVWLLTDLV------SADNDHSVKPLHIFSDHTLSITDLQIGSG-GTNARLYTASE 196 (476)
T ss_pred -----CCC----cEEEecCCCccEEEEEEEeec------ccccCCCccceeeeccCcceeEEEEecCC-CccceEEEecC
Confidence 777 455554 49999999987421 11111136788999999999999999871 13358999999
Q ss_pred CCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCc
Q 001391 156 DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (1088)
Q Consensus 156 Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~ 235 (1088)
|.++++||+..+..+.++..+.. +.++++ +|.+..++.|+.+|.|.+.++....... .
T Consensus 197 D~t~k~wdlS~g~LLlti~fp~s--i~av~l---Dpae~~~yiGt~~G~I~~~~~~~~~~~~-----------------~ 254 (476)
T KOG0646|consen 197 DRTIKLWDLSLGVLLLTITFPSS--IKAVAL---DPAERVVYIGTEEGKIFQNLLFKLSGQS-----------------A 254 (476)
T ss_pred CceEEEEEeccceeeEEEecCCc--ceeEEE---cccccEEEecCCcceEEeeehhcCCccc-----------------c
Confidence 99999999999999888766543 334444 6889999999999999998876211000 0
Q ss_pred eeEecccccceeeeEEEeCCCC--CEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEE
Q 001391 236 CFKLQDQQHTAVNLFRLVGHEG--SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD 313 (1088)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~gh~~--~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~ 313 (1088)
.+..-.....+..+..+.||++ .|+|++.+-||..|++|+.||.|++||+.+.+ +++ ++..-.++|+.
T Consensus 255 ~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q--------~iR--tl~~~kgpVtn 324 (476)
T KOG0646|consen 255 GVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ--------CIR--TLQTSKGPVTN 324 (476)
T ss_pred cccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH--------HHH--HHhhhccccce
Confidence 0000011124567778899999 99999999999999999999999999999864 443 33334567777
Q ss_pred EEEC
Q 001391 314 CCLT 317 (1088)
Q Consensus 314 v~~~ 317 (1088)
+.+.
T Consensus 325 L~i~ 328 (476)
T KOG0646|consen 325 LQIN 328 (476)
T ss_pred eEee
Confidence 7774
No 127
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.82 E-value=1.1e-18 Score=192.15 Aligned_cols=305 Identities=16% Similarity=0.178 Sum_probs=199.4
Q ss_pred EEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEE
Q 001391 183 SMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRI 262 (1088)
Q Consensus 183 s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v 262 (1088)
+..|.........||.+.+||.|.++|...-. .....+.+.....|.+.|+.+
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~---------------------------fr~ee~~lk~~~aH~nAifDl 106 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIV---------------------------FRLEERQLKKPLAHKNAIFDL 106 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhh---------------------------cchhhhhhcccccccceeEee
Confidence 34443334556789999999999999987100 001233456667899999999
Q ss_pred EEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcC--CC
Q 001391 263 EWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS--DG 337 (1088)
Q Consensus 263 ~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~--~~ 337 (1088)
.|.|....|++++.|.++++||+...+ .++.....||...|.++||. +..|++|+.||.+.|||+ ++
T Consensus 107 ~wapge~~lVsasGDsT~r~Wdvk~s~--------l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~ 178 (720)
T KOG0321|consen 107 KWAPGESLLVSASGDSTIRPWDVKTSR--------LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNG 178 (720)
T ss_pred ccCCCceeEEEccCCceeeeeeeccce--------eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccc
Confidence 999977889999999999999999853 44423588999999999998 579999999999999998 22
Q ss_pred c--------------------------eeEEEcccCCCCeEE---EEEcCCCCEEEEEeC-CCCEEEEEcCCCCCCcccC
Q 001391 338 K--------------------------QLKMIKEHIGRGIWR---CLYDSLSSLLVTAGF-DSAIKVHQFQAFLPGSLES 387 (1088)
Q Consensus 338 ~--------------------------~~~~~~~h~~~~V~~---l~~~~dg~~l~tg~~-Dg~I~iwd~~~~~~~~~~~ 387 (1088)
. .+..-..+.. .|.+ +.+..|...||++|. |+.|++||++...-..-.
T Consensus 179 ~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~-ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~- 256 (720)
T KOG0321|consen 179 VDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASN-TIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQ- 256 (720)
T ss_pred hhhHHHHhhhhhccccCCCCCCchhhccccccccccC-ceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccccc-
Confidence 0 0111222333 4655 556678888999888 999999999642110000
Q ss_pred CccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcce
Q 001391 388 HPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPI 467 (1088)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i 467 (1088)
++.....+. .. +. ....+
T Consensus 257 --------------------------------ep~~~~~~~------t~-sk-----------------------rs~G~ 274 (720)
T KOG0321|consen 257 --------------------------------EPRGSDKYP------TH-SK-----------------------RSVGQ 274 (720)
T ss_pred --------------------------------CCCcccCcc------Cc-cc-----------------------ceeee
Confidence 000000000 00 00 00011
Q ss_pred EEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeE
Q 001391 468 ICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRL 547 (1088)
Q Consensus 468 ~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i 547 (1088)
.++..+.. +.++...+.|+.|++|++......+...+.. +.....-.-.+.++++.+|++|+.|+..
T Consensus 275 ~nL~lDss--------Gt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg-----~~~~sf~vks~lSpd~~~l~SgSsd~~a 341 (720)
T KOG0321|consen 275 VNLILDSS--------GTYLFASCTDNSIYFYNMRSLSISPVAEFSG-----KLNSSFYVKSELSPDDCSLLSGSSDEQA 341 (720)
T ss_pred EEEEecCC--------CCeEEEEecCCcEEEEeccccCcCchhhccC-----cccceeeeeeecCCCCceEeccCCCcce
Confidence 22222222 2344444448899999887765544332211 1111111123578999999999999999
Q ss_pred EEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeee--CCCEEEEEcCCCcEEEEeCCcccc
Q 001391 548 KLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASF--EDEVLFCGDLRGNLVLFPLLRDLL 614 (1088)
Q Consensus 548 ~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~sp--dg~~LatGs~dg~I~Iw~~~~~~~ 614 (1088)
++|.+..... +.....+|.-.|++++|.| ....+ +.++|..++||++.++..
T Consensus 342 yiw~vs~~e~--------------~~~~l~Ght~eVt~V~w~pS~~t~v~-TcSdD~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 342 YIWVVSSPEA--------------PPALLLGHTREVTTVRWLPSATTPVA-TCSDDFRVKIWRLSNGLE 395 (720)
T ss_pred eeeeecCccC--------------ChhhhhCcceEEEEEeeccccCCCce-eeccCcceEEEeccCchh
Confidence 9999986532 2222458999999999986 35555 559999999999977543
No 128
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.1e-18 Score=170.98 Aligned_cols=237 Identities=19% Similarity=0.258 Sum_probs=180.0
Q ss_pred CCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcC--CCC
Q 001391 192 EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS--CGS 269 (1088)
Q Consensus 192 ~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp--~g~ 269 (1088)
-|.+||+++.|++|+|+..+.+. ....+.++.||.++|..++|.. -|.
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~------------------------------~s~ll~~L~Gh~GPVwqv~wahPk~G~ 71 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNG------------------------------QSKLLAELTGHSGPVWKVAWAHPKFGT 71 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCC------------------------------CceeeeEecCCCCCeeEEeecccccCc
Confidence 47899999999999999998110 2367889999999999999964 789
Q ss_pred EEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC----CCEEEEEeCCCcEEEEcCCCc----eeE
Q 001391 270 KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT----DSFIITAGEDCTCRVWGSDGK----QLK 341 (1088)
Q Consensus 270 ~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~----~~~l~sg~~Dg~i~vWd~~~~----~~~ 341 (1088)
+|++++.||.|.||.-.+++. +.. .....|...|.+++|. +-.|++++.||.|.|.+.+.. ..+
T Consensus 72 iLAScsYDgkVIiWke~~g~w------~k~--~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~k 143 (299)
T KOG1332|consen 72 ILASCSYDGKVIIWKEENGRW------TKA--YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSK 143 (299)
T ss_pred EeeEeecCceEEEEecCCCch------hhh--hhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchh
Confidence 999999999999999988754 222 3677899999999997 568999999999999998322 223
Q ss_pred EEcccCCCCeEEEEEcCC---C-----------CEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCC
Q 001391 342 MIKEHIGRGIWRCLYDSL---S-----------SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPN 407 (1088)
Q Consensus 342 ~~~~h~~~~V~~l~~~~d---g-----------~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (1088)
....|.- +|+++++.|. | +.|++||.|..|+||+.+...
T Consensus 144 i~~aH~~-GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~-------------------------- 196 (299)
T KOG1332|consen 144 IVFAHEI-GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS-------------------------- 196 (299)
T ss_pred hhhcccc-ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc--------------------------
Confidence 4567877 7999999885 4 469999999999999985410
Q ss_pred CccceeeccCCCCceEEEEeccCC-----eEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCC
Q 001391 408 FSEQIRLTDSKSEYVRCLHLTSED-----TLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCG 482 (1088)
Q Consensus 408 ~~~~~~~~~~~~~~V~~l~~s~~~-----~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~ 482 (1088)
-.....+.+|.+.||.+++.|.- .+..++.+|.++.|... .....|...+...-...++.+.++..
T Consensus 197 -w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~-~e~e~wk~tll~~f~~~~w~vSWS~s------- 267 (299)
T KOG1332|consen 197 -WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD-EEYEPWKKTLLEEFPDVVWRVSWSLS------- 267 (299)
T ss_pred -hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec-CccCcccccccccCCcceEEEEEecc-------
Confidence 01112255677899999999843 45566788988876554 33345654443333455666666444
Q ss_pred CCCeEEEecCCCCEEEEEEcC
Q 001391 483 IDDWVALGDGKGNMTIVRVVG 503 (1088)
Q Consensus 483 ~~~~la~g~~dg~I~iw~~~~ 503 (1088)
+++|++++.|+.+.+|.-+.
T Consensus 268 -Gn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 268 -GNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred -ccEEEEecCCcEEEEEEeCC
Confidence 48999999999999997653
No 129
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=5.7e-19 Score=198.39 Aligned_cols=286 Identities=15% Similarity=0.192 Sum_probs=213.0
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCC----eeEEEEeeeC--CcceEEEEecccccccCCCccceeeEE
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG----TLIRPFQVFH--GIRLHGISCNFINCTEGSVSTRVTFEV 91 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg----~~~~~~~~~~--~~~V~~i~~s~~~~~~~~d~~~~~~~l 91 (1088)
++..+|... ++ ...|+.++...++||.+... ++...+.... -..+..+.|.. -+ +.+|
T Consensus 40 ~~~nAIs~n--r~----~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~------~~----~NlI 103 (839)
T KOG0269|consen 40 AKANAISVN--RD----INQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQ------LY----SNLI 103 (839)
T ss_pred cccceEeec--CC----cceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhccccc------ch----hhhh
Confidence 456677777 77 66777777788999987543 2322322111 11344556652 12 2566
Q ss_pred EEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceE
Q 001391 92 ALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII 170 (1088)
Q Consensus 92 a~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~ 170 (1088)
|++. .|.|.+||+.... +.+++..+..|...|+++.|++ ....+|++|+.||+|++||++..+-.
T Consensus 104 AT~s~nG~i~vWdlnk~~------------rnk~l~~f~EH~Rs~~~ldfh~--tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 104 ATCSTNGVISVWDLNKSI------------RNKLLTVFNEHERSANKLDFHS--TEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred eeecCCCcEEEEecCccc------------cchhhhHhhhhccceeeeeecc--CCccEEEecCCCceEEEEeeeccccc
Confidence 6655 8999999998532 3577888999999999999998 25579999999999999999988777
Q ss_pred EEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeE
Q 001391 171 LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (1088)
Q Consensus 171 ~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1088)
.++.+...+ +..+.|.+ ..+..++++...|.+++||++ ...++..
T Consensus 170 ~t~~~nSES-iRDV~fsp--~~~~~F~s~~dsG~lqlWDlR--------------------------------qp~r~~~ 214 (839)
T KOG0269|consen 170 STFRSNSES-IRDVKFSP--GYGNKFASIHDSGYLQLWDLR--------------------------------QPDRCEK 214 (839)
T ss_pred ccccccchh-hhceeecc--CCCceEEEecCCceEEEeecc--------------------------------CchhHHH
Confidence 666653322 33344432 347899999999999999998 1456777
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC---CEEEEEe--
Q 001391 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAG-- 325 (1088)
Q Consensus 251 ~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~---~~l~sg~-- 325 (1088)
.+..|.+.|.++.|+|++.+|||||.|+.|+|||+.+.+. ... .......++.++.|.| .+|++++
T Consensus 215 k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~------~~~---~tInTiapv~rVkWRP~~~~hLAtcsmv 285 (839)
T KOG0269|consen 215 KLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA------KPK---HTINTIAPVGRVKWRPARSYHLATCSMV 285 (839)
T ss_pred HhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc------cce---eEEeecceeeeeeeccCccchhhhhhcc
Confidence 8899999999999999999999999999999999997543 111 2233456889999983 5788776
Q ss_pred CCCcEEEEcCC--CceeEEEcccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEcC
Q 001391 326 EDCTCRVWGSD--GKQLKMIKEHIGRGIWRCLYDS-LSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 326 ~Dg~i~vWd~~--~~~~~~~~~h~~~~V~~l~~~~-dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
.|-.|+|||+. --+..++..|.. .++.++|.. |...|.+++.||+|..+..+
T Consensus 286 ~dtsV~VWDvrRPYIP~~t~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 286 VDTSVHVWDVRRPYIPYATFLEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred ccceEEEEeeccccccceeeeccCc-cccceeccCCCceeeEeecCccHHHHhhhh
Confidence 57789999994 346688999998 688999954 55688999999998877663
No 130
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.81 E-value=5.3e-18 Score=170.11 Aligned_cols=300 Identities=17% Similarity=0.248 Sum_probs=214.2
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCe------eEE----EEee----eCCcceEEEEeccccccc
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT------LIR----PFQV----FHGIRLHGISCNFINCTE 80 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~------~~~----~~~~----~~~~~V~~i~~s~~~~~~ 80 (1088)
|.|.|.++.+. +. .++|+++|. ||.|.|||++... ++. .+.. .|...|..+.|-|.
T Consensus 42 HgGsvNsL~id--~t---egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~---- 112 (397)
T KOG4283|consen 42 HGGSVNSLQID--LT---EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI---- 112 (397)
T ss_pred CCCccceeeec--cc---cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee----
Confidence 77899999998 65 589999988 8999999997532 111 1111 12346788888763
Q ss_pred CCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcE
Q 001391 81 GSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSI 159 (1088)
Q Consensus 81 ~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V 159 (1088)
.. ..+.+++ |.+++|||.++.. ..-.+ ...+.|++-+++|....-.++|+|..|-.|
T Consensus 113 -Dt-----GmFtssSFDhtlKVWDtnTlQ---------------~a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~V 170 (397)
T KOG4283|consen 113 -DT-----GMFTSSSFDHTLKVWDTNTLQ---------------EAVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQV 170 (397)
T ss_pred -cC-----ceeecccccceEEEeecccce---------------eeEEe-ecCceeehhhcChhhhcceEEEEecCCCcE
Confidence 23 4555555 9999999998632 22222 244778999999976666789999999999
Q ss_pred EEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEe
Q 001391 160 RVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1088)
Q Consensus 160 ~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 239 (1088)
++.|+.+|.....+.+|... +.++.+. ....-.|++|+.||.|++||++.. .++++.
T Consensus 171 rLCDi~SGs~sH~LsGHr~~-vlaV~Ws--p~~e~vLatgsaDg~irlWDiRra--------------------sgcf~~ 227 (397)
T KOG4283|consen 171 RLCDIASGSFSHTLSGHRDG-VLAVEWS--PSSEWVLATGSADGAIRLWDIRRA--------------------SGCFRV 227 (397)
T ss_pred EEEeccCCcceeeeccccCc-eEEEEec--cCceeEEEecCCCceEEEEEeecc--------------------cceeEE
Confidence 99999999999999888664 4455552 234557889999999999999811 123333
Q ss_pred cccccc--eeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcce---EEE
Q 001391 240 QDQQHT--AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV---WDC 314 (1088)
Q Consensus 240 ~~~~~~--~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I---~~v 314 (1088)
.+...+ ...+..-..|.+.|++++|..++.++++++.|..+++|+..+++.. ..+.. ..-|+..+ ..+
T Consensus 228 lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~nt----l~~~g---~~~~n~~~~~~~~~ 300 (397)
T KOG4283|consen 228 LDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNT----LREFG---PIIHNQTTSFAVHI 300 (397)
T ss_pred eecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccc----ccccc---cccccccccceEEE
Confidence 332211 1222334579999999999999999999999999999999987642 11111 11121111 001
Q ss_pred E-ECCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 315 C-LTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 315 ~-~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
. .....++.--.++++.++.+ +|..+..+..|- +.|.+.++-|+=+...+|..|+.|..|..
T Consensus 301 ~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~-k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 301 QSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHL-KRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred eecccceEEEEecCCeEEEEEccCceEEEeeeccc-ceeeEEeecCchhhhhccccCCccccccc
Confidence 1 11344555556799999999 999999999994 47999999999889999999999999987
No 131
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.81 E-value=1.2e-17 Score=167.60 Aligned_cols=319 Identities=18% Similarity=0.220 Sum_probs=206.1
Q ss_pred CCcceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEec
Q 001391 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLK 142 (1088)
Q Consensus 64 ~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p 142 (1088)
|+..|..+++.+ ..| ++++++| |+.|.|||++.........---.....-...+..+|.-.|.++.|-|
T Consensus 42 HgGsvNsL~id~------teg----rymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP 111 (397)
T KOG4283|consen 42 HGGSVNSLQIDL------TEG----RYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYP 111 (397)
T ss_pred CCCccceeeecc------ccc----eEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEee
Confidence 445788888874 455 5666655 99999999985431111100000001112234467888999999999
Q ss_pred ccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCC
Q 001391 143 VCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSP 222 (1088)
Q Consensus 143 ~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~ 222 (1088)
. |...+.+++-|.++++||..+.+....+.-+. .+|+-++.+-.....+||+|+.+-.|++.|+.
T Consensus 112 ~--DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~--~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~----------- 176 (397)
T KOG4283|consen 112 I--DTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEG--KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA----------- 176 (397)
T ss_pred e--cCceeecccccceEEEeecccceeeEEeecCc--eeehhhcChhhhcceEEEEecCCCcEEEEecc-----------
Confidence 4 55678889999999999999988877766544 35554443333446689999999999999999
Q ss_pred CCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCE-EEEEECCCcEEEEEcCCCcccCCCCceeeec
Q 001391 223 EGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK-LVSVSDDRSARIWEVRAEYWKDSDSIEEVGS 301 (1088)
Q Consensus 223 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~-l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~ 301 (1088)
.+...+.+.||.+.|.+|.|+|...+ |+||+.||.||+||++... .++.
T Consensus 177 ----------------------SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras-------gcf~- 226 (397)
T KOG4283|consen 177 ----------------------SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS-------GCFR- 226 (397)
T ss_pred ----------------------CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccc-------ceeE-
Confidence 88889999999999999999998886 5889999999999998731 1221
Q ss_pred eeeeccCcceEEEEECCCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCC-
Q 001391 302 SVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF- 380 (1088)
Q Consensus 302 ~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~- 380 (1088)
.+..|+. . ....++.-..|.+ .|.+++|..++.++++++.|..+++|+....
T Consensus 227 -~lD~hn~--------------------k-----~~p~~~~n~ah~g-kvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 227 -VLDQHNT--------------------K-----RPPILKTNTAHYG-KVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred -EeecccC--------------------c-----cCccccccccccc-eeeeeeecccchhhhhccCccceEEeecccCc
Confidence 2333321 0 0111223446888 4999999999999999999999999998431
Q ss_pred -CCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEee
Q 001391 381 -LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKIL 459 (1088)
Q Consensus 381 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~ 459 (1088)
.++.+- ++. .+...... -.+++.+ .+.++..-+++.+..+++..... .+.+
T Consensus 280 ntl~~~g------------~~~----~n~~~~~~------~~~~~~~---s~vfv~~p~~~~lall~~~sgs~---ir~l 331 (397)
T KOG4283|consen 280 NTLREFG------------PII----HNQTTSFA------VHIQSMD---SDVFVLFPNDGSLALLNLLEGSF---VRRL 331 (397)
T ss_pred ccccccc------------ccc----ccccccce------EEEeecc---cceEEEEecCCeEEEEEccCceE---EEee
Confidence 111110 000 00000000 0012111 12344444556666555544332 3344
Q ss_pred eecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEE
Q 001391 460 QVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRV 501 (1088)
Q Consensus 460 ~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~ 501 (1088)
.+| ...+.|....++ -+.+.+|+.|++|..|..
T Consensus 332 ~~h-~k~i~c~~~~~~--------fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 332 STH-LKRINCAAYRPD--------FEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ecc-cceeeEEeecCc--------hhhhhccccCCccccccc
Confidence 555 555666554333 367889999999999976
No 132
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.81 E-value=3.1e-18 Score=182.75 Aligned_cols=261 Identities=16% Similarity=0.233 Sum_probs=189.4
Q ss_pred CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce----------EEEeccCCceeEEEEeeecCCCCCcEEEEE
Q 001391 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI----------ILEVHSPERCLLYSMKLWGDNLEALRIASG 199 (1088)
Q Consensus 130 ~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~----------~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg 199 (1088)
.|.+.|+.++..| .+...+|+++..+.|.|||.....- -.++.+|... .|++.+ .....-.+++|
T Consensus 122 ~h~gEVnRaRymP--Qnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~e-g~glsW--n~~~~g~Lls~ 196 (422)
T KOG0264|consen 122 NHDGEVNRARYMP--QNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKE-GYGLSW--NRQQEGTLLSG 196 (422)
T ss_pred cCCccchhhhhCC--CCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccc-cccccc--ccccceeEeec
Confidence 5889999999999 3556889899999999999864321 1244455442 344433 23345689999
Q ss_pred ecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCC-CCEEEEEECCC
Q 001391 200 TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC-GSKLVSVSDDR 278 (1088)
Q Consensus 200 ~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~-g~~l~s~s~Dg 278 (1088)
+.|++|.+||+......+ ....+...+.+|+..|..++|++- ...++++++|+
T Consensus 197 ~~d~~i~lwdi~~~~~~~--------------------------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~ 250 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKED--------------------------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG 250 (422)
T ss_pred cCCCcEEEEeccccccCC--------------------------ccccceEEeecCCcceehhhccccchhhheeecCCC
Confidence 999999999998211100 023456778999999999999985 46789999999
Q ss_pred cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcC--CCceeEEEcccCCCCeEE
Q 001391 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWR 353 (1088)
Q Consensus 279 ~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~--~~~~~~~~~~h~~~~V~~ 353 (1088)
.+.|||+++. . .+... ...+|.+.|+|++|+ +..|+||+.|++|++||+ -.+++.++.+|.. .|..
T Consensus 251 ~L~iwD~R~~-~-----~~~~~--~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~d-ev~~ 321 (422)
T KOG0264|consen 251 KLMIWDTRSN-T-----SKPSH--SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHED-EVFQ 321 (422)
T ss_pred eEEEEEcCCC-C-----CCCcc--cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCc-ceEE
Confidence 9999999963 1 12222 778999999999998 579999999999999999 3568899999998 6999
Q ss_pred EEEcCCC-CEEEEEeCCCCEEEEEcCCC-CCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCC
Q 001391 354 CLYDSLS-SLLVTAGFDSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED 431 (1088)
Q Consensus 354 l~~~~dg-~~l~tg~~Dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~ 431 (1088)
+.|+|.. ..|+++|.|+.+.+||+..- ..+..+... ....+.+..-.+|...|..+.|+|..
T Consensus 322 V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~----------------dgppEllF~HgGH~~kV~DfsWnp~e 385 (422)
T KOG0264|consen 322 VEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAE----------------DGPPELLFIHGGHTAKVSDFSWNPNE 385 (422)
T ss_pred EEeCCCCCceeEecccCCcEEEEeccccccccChhhhc----------------cCCcceeEEecCcccccccccCCCCC
Confidence 9999975 58999999999999999531 111100000 11112233345777889999999977
Q ss_pred eE--EEEecCCeEEEEE
Q 001391 432 TL--YIATNHGYLYHTK 446 (1088)
Q Consensus 432 ~l--l~~t~~g~i~~~~ 446 (1088)
-. ...+.++.+..|+
T Consensus 386 PW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 386 PWTIASVAEDNILQIWQ 402 (422)
T ss_pred CeEEEEecCCceEEEee
Confidence 33 3345666666443
No 133
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=9.1e-18 Score=170.21 Aligned_cols=305 Identities=19% Similarity=0.201 Sum_probs=194.6
Q ss_pred eeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceE------EEeccCCceeEEEEeeecCCCCCcE-E
Q 001391 124 LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII------LEVHSPERCLLYSMKLWGDNLEALR-I 196 (1088)
Q Consensus 124 ~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~------~~~~~~~~~~~~s~~~~~~s~~~~~-l 196 (1088)
.+..|++|.+.|++++|+. ||++|||++.|++|++|++...+.. ..+... ....+.| .||..- +
T Consensus 78 ~~~~LKgH~~~vt~~~FsS---dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d---hpT~V~F---apDc~s~v 148 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSS---DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD---HPTRVVF---APDCKSVV 148 (420)
T ss_pred hhhhhhccCCceeeeEEcC---CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCC---CceEEEE---CCCcceEE
Confidence 4567899999999999999 9999999999999999999764321 111111 1222333 455554 4
Q ss_pred EEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC
Q 001391 197 ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD 276 (1088)
Q Consensus 197 ~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~ 276 (1088)
++.-...++++|.+.- +.+ |.. .-...-|+ ...--+.|.-.|..+-....+++|+|++.
T Consensus 149 v~~~~g~~l~vyk~~K-----~~d--------G~~--~~~~v~~D------~~~f~~kh~v~~i~iGiA~~~k~imsas~ 207 (420)
T KOG2096|consen 149 VSVKRGNKLCVYKLVK-----KTD--------GSG--SHHFVHID------NLEFERKHQVDIINIGIAGNAKYIMSASL 207 (420)
T ss_pred EEEccCCEEEEEEeee-----ccc--------CCC--Cccccccc------ccccchhcccceEEEeecCCceEEEEecC
Confidence 4445567899998761 111 000 00000011 01112346677778888888999999999
Q ss_pred CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC----CC-----ceeEEEcc
Q 001391 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS----DG-----KQLKMIKE 345 (1088)
Q Consensus 277 Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~----~~-----~~~~~~~~ 345 (1088)
|..|.+|++.. +. +. ........-..++.+ |.++++++..--++||.. +| ..+..+++
T Consensus 208 dt~i~lw~lkG-q~--------L~--~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG 276 (420)
T KOG2096|consen 208 DTKICLWDLKG-QL--------LQ--SIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG 276 (420)
T ss_pred CCcEEEEecCC-ce--------ee--eeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc
Confidence 99999999984 22 21 222222233445555 789999999999999997 33 24557899
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEE
Q 001391 346 HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCL 425 (1088)
Q Consensus 346 h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 425 (1088)
|.. +|..++|++++..++|.+.||++++||.+-..... .+..++.. +. ..+...++....+
T Consensus 277 H~s-aV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~-----------qDpk~Lk~------g~-~pl~aag~~p~RL 337 (420)
T KOG2096|consen 277 HQS-AVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAG-----------QDPKILKE------GS-APLHAAGSEPVRL 337 (420)
T ss_pred chh-heeeeeeCCCcceeEEEecCCcEEEeeccceEecC-----------CCchHhhc------CC-cchhhcCCCceEE
Confidence 998 79999999999999999999999999984210000 00001000 00 0111112223378
Q ss_pred EeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEE
Q 001391 426 HLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (1088)
Q Consensus 426 ~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~ 500 (1088)
..+|+|..++.+....+..+.-.+ ++-...++.-++..|.++++.+. +.++++++ |..++++.
T Consensus 338 ~lsP~g~~lA~s~gs~l~~~~se~---g~~~~~~e~~h~~~Is~is~~~~--------g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 338 ELSPSGDSLAVSFGSDLKVFASED---GKDYPELEDIHSTTISSISYSSD--------GKYIATCG-DRYVRVIR 400 (420)
T ss_pred EeCCCCcEEEeecCCceEEEEccc---CccchhHHHhhcCceeeEEecCC--------CcEEeeec-ceeeeeec
Confidence 999999999888777776443333 22122333444677888888554 47777766 56777764
No 134
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=3.3e-17 Score=165.88 Aligned_cols=264 Identities=17% Similarity=0.228 Sum_probs=185.4
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC----eeEEEEeeeCCcceEEEEecccccccCCCccceeeEE
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG----TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg----~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~l 91 (1088)
..-|+++.|. +- |+.+|+|+ |++|+|||..+. .+....+.|.+ .|..|.|.+. .-| ..+
T Consensus 13 ~DlihdVs~D--~~----GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~-Si~rV~WAhP-----EfG----qvv 76 (361)
T KOG2445|consen 13 KDLIHDVSFD--FY----GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDG-SIWRVVWAHP-----EFG----QVV 76 (361)
T ss_pred cceeeeeeec--cc----CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCC-cEEEEEecCc-----ccc----ceE
Confidence 3568999999 66 88888887 899999996433 56677788777 7999999742 234 566
Q ss_pred EEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce-
Q 001391 92 ALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI- 169 (1088)
Q Consensus 92 a~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~- 169 (1088)
|++. |++++||.=....... ...+.....++..-...|++|.|.| ..-|-.||+++.||.+|||+.-.-..
T Consensus 77 A~cS~Drtv~iWEE~~~~~~~------~~~~Wv~~ttl~DsrssV~DV~FaP-~hlGLklA~~~aDG~lRIYEA~dp~nL 149 (361)
T KOG2445|consen 77 ATCSYDRTVSIWEEQEKSEEA------HGRRWVRRTTLVDSRSSVTDVKFAP-KHLGLKLAAASADGILRIYEAPDPMNL 149 (361)
T ss_pred EEEecCCceeeeeeccccccc------ccceeEEEEEeecCCcceeEEEecc-hhcceEEEEeccCcEEEEEecCCcccc
Confidence 6654 9999999853211000 1123566778888889999999999 22455899999999999998754322
Q ss_pred -----EEEec----c--CCceeEEEEeeecCCCCCcEEEEEecC-----CeEEEEEeccCccccCCCCCCCccCCCCCCC
Q 001391 170 -----ILEVH----S--PERCLLYSMKLWGDNLEALRIASGTIY-----NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (1088)
Q Consensus 170 -----~~~~~----~--~~~~~~~s~~~~~~s~~~~~l~sg~~d-----g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~ 233 (1088)
..+++ . ......+++.+.+......+||.|+.+ +.++||....+
T Consensus 150 s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~-------------------- 209 (361)
T KOG2445|consen 150 SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNEN-------------------- 209 (361)
T ss_pred ccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCC--------------------
Confidence 22222 1 112223344443323345678888765 57888887610
Q ss_pred CceeEecccccceeeeEEEeCCCCCEEEEEEcCCC----CEEEEEECCCcEEEEEcCCCccc-------CC-----CCce
Q 001391 234 FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG----SKLVSVSDDRSARIWEVRAEYWK-------DS-----DSIE 297 (1088)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g----~~l~s~s~Dg~v~iWd~~~~~~~-------~~-----~~~~ 297 (1088)
..+-..+..+.+|+.+|+.|+|.|+- ..|++++.|| |+||++...... .+ ...+
T Consensus 210 ---------~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~ 279 (361)
T KOG2445|consen 210 ---------GRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVE 279 (361)
T ss_pred ---------cceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceE
Confidence 00234566778999999999999964 4689999999 999999853311 11 1123
Q ss_pred eeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC
Q 001391 298 EVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 298 ~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~ 335 (1088)
.+. .+.+|.+.||.+.|+ |..|.+.|.||.+|+|..
T Consensus 280 ~vs--~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 280 KVS--ELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred Eee--eccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 333 578899999999998 899999999999999997
No 135
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.79 E-value=1e-15 Score=178.71 Aligned_cols=597 Identities=15% Similarity=0.075 Sum_probs=312.2
Q ss_pred CCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCC----CEEEEEEcC
Q 001391 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG----SIFRIEWSS 266 (1088)
Q Consensus 191 ~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~----~V~~v~~sp 266 (1088)
.+...++.++.++.+.+||... ...+..+..-+. ...-+.+++
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~---------------------------------~~~~~~i~~~er~~l~~~~~~g~s~ 143 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKN---------------------------------SSVLSKIQSDERCTLYSSLIIGDSA 143 (967)
T ss_pred hhcceEEEEEcCceEEEEeccc---------------------------------CceehhcCCCceEEEEeEEEEeccC
Confidence 4567888999999999999882 222222221111 112234566
Q ss_pred CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeE-E
Q 001391 267 CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLK-M 342 (1088)
Q Consensus 267 ~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~-~ 342 (1088)
+.-++++|+.-+.|.+|+...... . ..+.||.+.|.++.++ +.++++.++|.++|+|++ +.+... .
T Consensus 144 ~~~~i~~gsv~~~iivW~~~~dn~-------p---~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~ 213 (967)
T KOG0974|consen 144 EELYIASGSVFGEIIVWKPHEDNK-------P---IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCT 213 (967)
T ss_pred cEEEEEeccccccEEEEeccccCC-------c---ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcc
Confidence 777899999999999999884321 1 2588999999999996 899999999999999999 555444 5
Q ss_pred EcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCce
Q 001391 343 IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYV 422 (1088)
Q Consensus 343 ~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 422 (1088)
.-+|.. .||.+.|.|+ .++|++.|.+.++|+.+...+..+.+|. ...+
T Consensus 214 ~fgHsa-Rvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h~-----------------------------g~~i 261 (967)
T KOG0974|consen 214 GFGHSA-RVWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEHS-----------------------------GKGI 261 (967)
T ss_pred cccccc-eeEEEEeccc--eeEEeccceEEEEEecccceehhhhhhh-----------------------------hcce
Confidence 668998 5999999998 8999999999999988776555555544 1246
Q ss_pred EEEEeccCC-eEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCC--C--------CCCcCCCCCeEEEec
Q 001391 423 RCLHLTSED-TLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSN--E--------PKYPCGIDDWVALGD 491 (1088)
Q Consensus 423 ~~l~~s~~~-~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~--~--------~~~s~~~~~~la~g~ 491 (1088)
..++..++. ..+.+.++|.+..+++... ...++. ....+++.... . .......+..+...+
T Consensus 262 w~~~~~~~~~~~vT~g~Ds~lk~~~l~~r-------~~e~~~-~~~~~~~s~~kl~~~~f~k~~~~~~~~~~~~~~~~~~ 333 (967)
T KOG0974|consen 262 WKIAVPIGVIIKVTGGNDSTLKLWDLNGR-------GLEGHV-EQSSLLSSIVKLKDDQFVKCDTLLNFANHGGKLSILG 333 (967)
T ss_pred eEEEEcCCceEEEeeccCcchhhhhhhcc-------ccccce-eeeeeecchhhhcceeeeehHHHHHHHhcCCeEeecc
Confidence 666766655 3444566776653322111 111110 00000000000 0 000000111222222
Q ss_pred C--CCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccc-
Q 001391 492 G--KGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNN- 568 (1088)
Q Consensus 492 ~--dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~- 568 (1088)
. ++.+...+..+... +.. .| .+..+++.++..+.+++.......-....+......
T Consensus 334 ~~~~~~l~~~~~~s~~~-----------------i~~--~~--~~~~~v~~~~~k~~~~v~~~~~~~~~~~~~~h~~~s~ 392 (967)
T KOG0974|consen 334 NKGEKELITFESDSMLR-----------------IIF--SC--TNDDWVAHMSNKGDIYVAWHQNTIVITTSSLHRKLSA 392 (967)
T ss_pred cccccceeeeeeccCcc-----------------cee--hc--cccceeeeccCCCcEEEEEeecccCccchhHHHHHhh
Confidence 2 23333322221110 000 00 122344444444444443322111000000000000
Q ss_pred ----eeeeee------eccccCceEEEEE-eeeCCCEEEEEcCCCcEEEEeCCccccccccc-ccccccCcce--eeccc
Q 001391 569 ----VFLVAE------FSSCFGARIMCLD-ASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSV-ALHVEVSPLN--YFKGA 634 (1088)
Q Consensus 569 ----~~l~~~------~~~~h~~~It~l~-~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~-~~~~~l~~~~--~~~g~ 634 (1088)
..+.+. +...-+-+..+.+ .+|-+.+.+.+.+... ..+......+..... +......... +..+.
T Consensus 393 ~~~~~~~~~~~~~~~~~~g~~~~r~~~~~~~~~ad~~~i~~~~~f~-~~~~~~~~~l~~~~~~~~~l~Gs~~g~lv~~~l 471 (967)
T KOG0974|consen 393 NPISQVCEASYVASKLIDGSIQVRNLSGSLESFADVLNIRSLKEFR-LPFAFRIPCLTSVVEDNLILIGSRHGELVLYNL 471 (967)
T ss_pred CcccceeeeeeehhhccCCcchhhhhhcccccccceeEEeeeeeec-cccCCCCcceecccCcceEEEccCcCcEEEecC
Confidence 000000 0000011111111 1222333333322222 111111111100000 0000000000 00000
Q ss_pred -ccccceeEE--EEEeccCCceEEEEecCCCeEEEEEeecCCcceeee-----cceeeeeeeeEEEeecCCCccCcccce
Q 001391 635 -HGISTVSTL--SVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFI-----GMKQVKELSLIQSVSAENNSIDLASCN 706 (1088)
Q Consensus 635 -hg~~~Vtsv--~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~~~~~~~~-----~~~~~~~~~~ve~~~~~~~~~~~~~~~ 706 (1088)
.+.+..+.+ ...+....+.+-.+.++|+.+-+-.+..++.-..+. ++++..++.. -.+.++
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~si~~~~~kdn~~~~~~~g~dg~~~~~~~~r~~~~n~~~~L~~-----------~~~~s~ 540 (967)
T KOG0974|consen 472 DEPNDDIVLSLSRSHELDTGSSITCIRSKDNSAIFMTTGRDGYWSTIELIRGGTTNYPMELMN-----------KKSFST 540 (967)
T ss_pred CCCCccceeeccCcccccccccEEEEecCCCcEEEEEecCCcEEEEEEEecCccccccceeee-----------eccCCe
Confidence 000111111 001111224677788899988887777765421111 1112111111 123556
Q ss_pred EEEeeecccEEEEeCCcceEEEEEeeCCcCcccccccCCcCCcceEEEEEeccEEEEEeeecccCCCcccccccccccCc
Q 001391 707 YAAGFASTDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHG 786 (1088)
Q Consensus 707 ~~~Gf~~~~~~iwn~~~~~~~~~~~cGg~~r~~~~~~~~~~~~~~~f~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~Hg 786 (1088)
+..| +...|.+|+-.++..+.=..|++.||.|+... -|+|.+.|..+-+..-+-+.+.. -.++.+.|+
T Consensus 541 v~~g-~~~~~~~~~k~n~~~~gf~st~f~l~n~T~~~--------~i~~~~cGg~hr~wal~g~t~~~---~~~re~~~~ 608 (967)
T KOG0974|consen 541 VSSG-ALPSKFINWKGNLLIVGFYSTSFILWNETNET--------PIFETYCGGSHRIWALNGSTDNQ---FNFREIASS 608 (967)
T ss_pred eeec-chhhhhccCCCceEEEEEEeccceEeccccCc--------eeEEEEeCCeeEEeecCCccccc---eeeeecccc
Confidence 7788 88999999999999999999999999999753 28899998877544433232221 145667888
Q ss_pred ceEEEEEEeccccccccccccccCCCceEEEeccCCceEEEEEecCCCcccccccccccccCCceeeeEEEeeeeeeccc
Q 001391 787 REIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGFENWSSSKLLGEHVGGSAVRSICFVSEINQISA 866 (1088)
Q Consensus 787 ~eI~~v~~~~~~~~~~~~~~~~~~~~~~~i~TG~eD~tIrl~~~~~~~~~~~~~~~~~~H~~gs~v~~~~f~~~~~~~~~ 866 (1088)
++|++..... ....++..|.|++.|| +.... .+.+.-.+.+|.+|++++..+-.-.++....
T Consensus 609 ~~i~~~~~~~--------------~~s~~~~nglh~~~ir--ai~~~--~~~ttv~~~~~~~~t~~~~a~~~~~~~l~sv 670 (967)
T KOG0974|consen 609 QLIRQKIDNL--------------SRNSWISNGLHGREIR--AISFS--PYSTTVSLDEHLSGSAVRSASCDGNIKLISV 670 (967)
T ss_pred cEEEEEeecc--------------cccccccCCCCCCcee--eeEec--ccccceecccCCcceeEEeeeccccceeEEE
Confidence 8888766542 2367999999999999 33322 2566778889988876666554333322222
Q ss_pred cccCccccccccCccccCCCCcEEEEEecceeEEEEEEEEeccccccccceeecccccCCCccccccCCCCceEEeeecc
Q 001391 867 VVDNVSEEINRQNGVAEDKENPFLLISVGAKRVLTSWLLRHRGIDEMEETTVESKYNRNGNDLELSLGASSSLSFQWLST 946 (1088)
Q Consensus 867 ~~~~~~~~~~~~~~~~~~~~~~~ll~s~g~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1088)
...+.++..-..++. ++......+.+++.+..++ .+. -....+..+..+++||+.+
T Consensus 671 ~~v~~~~~~t~~~~~-d~~~g~~~~~~~~gkr~i~-----~~~------------------~l~~~s~e~~~~~~~s~~~ 726 (967)
T KOG0974|consen 671 IFVNENLQCTDWYDE-DDENGTVYLLTGGGKRKIS-----SEN------------------ILWRSSHELDEVWDRSLRR 726 (967)
T ss_pred EecccCcccCCCCCc-CCCCCcEEEEEeccceeec-----hhh------------------hHhhhhhhhcccChhHhhh
Confidence 222223322222222 2233566777777777777 110 1112344557899999999
Q ss_pred CCCCCCCCCCC
Q 001391 947 DMPTKNSSTHG 957 (1088)
Q Consensus 947 ~~~~~~~~~~~ 957 (1088)
|||.||.+..|
T Consensus 727 ~~~~~~~p~~R 737 (967)
T KOG0974|consen 727 HRPVKYDPETR 737 (967)
T ss_pred cCceeECCCcc
Confidence 99998876644
No 136
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.78 E-value=2.1e-16 Score=173.87 Aligned_cols=271 Identities=19% Similarity=0.252 Sum_probs=206.7
Q ss_pred eeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC-CC
Q 001391 19 EISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EK 97 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~ 97 (1088)
.|..++|- || |..|+.+.|..+.|||...|.++.++++|++ .|.+++++ .|| .++|+++ |+
T Consensus 14 ci~d~afk--PD----GsqL~lAAg~rlliyD~ndG~llqtLKgHKD-tVycVAys-------~dG----krFASG~aDK 75 (1081)
T KOG1538|consen 14 CINDIAFK--PD----GTQLILAAGSRLLVYDTSDGTLLQPLKGHKD-TVYCVAYA-------KDG----KRFASGSADK 75 (1081)
T ss_pred chheeEEC--CC----CceEEEecCCEEEEEeCCCcccccccccccc-eEEEEEEc-------cCC----ceeccCCCce
Confidence 78899999 99 7777777778999999999999999999888 69999999 888 6777766 99
Q ss_pred EEEEEEeccCCCCCCCCCCccccccceeeec-cCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccC
Q 001391 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSL-PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP 176 (1088)
Q Consensus 98 ~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~ 176 (1088)
.|.+|+-..++ .+ -.|.+.|.|+.|+| -...|+|++- ...-+|..+.....+ .+..
T Consensus 76 ~VI~W~~klEG------------------~LkYSH~D~IQCMsFNP---~~h~LasCsL-sdFglWS~~qK~V~K-~kss 132 (1081)
T KOG1538|consen 76 SVIIWTSKLEG------------------ILKYSHNDAIQCMSFNP---ITHQLASCSL-SDFGLWSPEQKSVSK-HKSS 132 (1081)
T ss_pred eEEEecccccc------------------eeeeccCCeeeEeecCc---hHHHhhhcch-hhccccChhhhhHHh-hhhh
Confidence 99999866332 12 25999999999999 8888999874 346688776543322 1112
Q ss_pred CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCC
Q 001391 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (1088)
Q Consensus 177 ~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 256 (1088)
.+ +.++++ ..||.+++-|-.+|+|.+-+...+ ....+.+-.|.+
T Consensus 133 ~R--~~~CsW---tnDGqylalG~~nGTIsiRNk~gE-------------------------------ek~~I~Rpgg~N 176 (1081)
T KOG1538|consen 133 SR--IICCSW---TNDGQYLALGMFNGTISIRNKNGE-------------------------------EKVKIERPGGSN 176 (1081)
T ss_pred ee--EEEeee---cCCCcEEEEeccCceEEeecCCCC-------------------------------cceEEeCCCCCC
Confidence 22 233333 578999999999999998865410 222344445678
Q ss_pred CCEEEEEEcCCC-----CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCc
Q 001391 257 GSIFRIEWSSCG-----SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCT 329 (1088)
Q Consensus 257 ~~V~~v~~sp~g-----~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~ 329 (1088)
.+|++++|+|.. ..++......++.++.+... .++ ....-.-...|+.+. |.+++.|+.|+.
T Consensus 177 spiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~---------~Ig--k~r~L~FdP~CisYf~NGEy~LiGGsdk~ 245 (1081)
T KOG1538|consen 177 SPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK---------QIG--KDRALNFDPCCISYFTNGEYILLGGSDKQ 245 (1081)
T ss_pred CCceEEEecCCCCCCccceEEEEeccceeEEEEecce---------eec--ccccCCCCchhheeccCCcEEEEccCCCc
Confidence 899999999964 46777888888888888763 221 111112233466654 889999999999
Q ss_pred EEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 330 CRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 330 i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
+.+|..+|-.+.++..... .||.++..|++++++.|+.||+|..|++-
T Consensus 246 L~~fTR~GvrLGTvg~~D~-WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 246 LSLFTRDGVRLGTVGEQDS-WIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred eEEEeecCeEEeeccccce-eEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 9999999998988877665 69999999999999999999999999883
No 137
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=4.9e-17 Score=164.71 Aligned_cols=267 Identities=15% Similarity=0.218 Sum_probs=192.0
Q ss_pred EEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEE
Q 001391 59 PFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDV 138 (1088)
Q Consensus 59 ~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v 138 (1088)
.+...+..-||++.|. +.|. ++.+++.|++++|||.+.+. -...+....+.|.+.|+.|
T Consensus 7 pi~s~h~DlihdVs~D-------~~GR---RmAtCSsDq~vkI~d~~~~s-----------~~W~~Ts~Wrah~~Si~rV 65 (361)
T KOG2445|consen 7 PIDSGHKDLIHDVSFD-------FYGR---RMATCSSDQTVKIWDSTSDS-----------GTWSCTSSWRAHDGSIWRV 65 (361)
T ss_pred ccccCCcceeeeeeec-------ccCc---eeeeccCCCcEEEEeccCCC-----------CceEEeeeEEecCCcEEEE
Confidence 3443233369999998 6672 56666779999999986432 1367778889999999999
Q ss_pred EEecccCCCCEEEEEEcCCcEEEEEcCCC-------ceE-EEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEe
Q 001391 139 CFLKVCNGNRSLAIGCSDNSIRVWDISNS-------SII-LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV 210 (1088)
Q Consensus 139 ~f~p~~~d~~~lasgs~Dg~V~iWd~~~~-------~~~-~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~ 210 (1088)
.|.+ .+=|+.+|+++.|+++.||.-... +.+ .+.-...++.++.+.|.+. .-|..+|+++.||.++||+.
T Consensus 66 ~WAh-PEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~-hlGLklA~~~aDG~lRIYEA 143 (361)
T KOG2445|consen 66 VWAH-PEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPK-HLGLKLAAASADGILRIYEA 143 (361)
T ss_pred EecC-ccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecch-hcceEEEEeccCcEEEEEec
Confidence 9976 236889999999999999986311 111 1111334556777777543 45889999999999999987
Q ss_pred ccCccccCCCCCCCccCCCCCCCCceeEecccccceeee-EEEeCCCCCEEEEEEcCC---CCEEEEEECC-----CcEE
Q 001391 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL-FRLVGHEGSIFRIEWSSC---GSKLVSVSDD-----RSAR 281 (1088)
Q Consensus 211 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~gh~~~V~~v~~sp~---g~~l~s~s~D-----g~v~ 281 (1088)
-. ...++-|..+...+.+ -....+.....||.|+|. ..+|+.|+.+ +.++
T Consensus 144 ~d---------------------p~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~ 202 (361)
T KOG2445|consen 144 PD---------------------PMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVK 202 (361)
T ss_pred CC---------------------ccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceE
Confidence 51 1122223322211111 112246778899999974 3577887776 5789
Q ss_pred EEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC------CEEEEEeCCCcEEEEcCCC------------------
Q 001391 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD------SFIITAGEDCTCRVWGSDG------------------ 337 (1088)
Q Consensus 282 iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~------~~l~sg~~Dg~i~vWd~~~------------------ 337 (1088)
||....... .-..+. .+.+|+.+|++++|.| .+|++++.|| |+||.+..
T Consensus 203 Iye~~e~~r----Kw~kva--~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~ 275 (361)
T KOG2445|consen 203 IYEYNENGR----KWLKVA--ELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTD 275 (361)
T ss_pred EEEecCCcc----eeeeeh--hcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccc
Confidence 998876531 013333 7789999999999984 4799999999 99999842
Q ss_pred ---ceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 338 ---KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 338 ---~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
+.+..+..|.+ .||.+.|+-.|..|++.|.||.||+|..
T Consensus 276 l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 276 LPVEKVSELDDHNG-EVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred cceEEeeeccCCCC-ceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 23456778998 6999999999999999999999999986
No 138
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=4.6e-15 Score=170.61 Aligned_cols=480 Identities=11% Similarity=0.095 Sum_probs=274.7
Q ss_pred EEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEE
Q 001391 23 LCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLF 102 (1088)
Q Consensus 23 v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw 102 (1088)
-.|| +| .++++...+..|.||...||.++..+..+.. .+..+.+.|. +.. ...++.++-+|.|++|
T Consensus 22 avfS--nD----~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a-~l~s~~~~~~-----~~~--~~~~~~~sl~G~I~vw 87 (792)
T KOG1963|consen 22 AVFS--ND----AKFLFLCTGNFVKVYSTATGECITSLEDHTA-PLTSVIVLPS-----SEN--ANYLIVCSLDGTIRVW 87 (792)
T ss_pred cccc--cC----CcEEEEeeCCEEEEEecchHhhhhhcccccC-ccceeeecCC-----Ccc--ceEEEEEecCccEEEe
Confidence 3588 88 8999999999999999999999998887555 7899998854 221 1256667779999999
Q ss_pred EeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccC-----------CCCEEEEEEcCCc--EEEEEcCCCce
Q 001391 103 ELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN-----------GNRSLAIGCSDNS--IRVWDISNSSI 169 (1088)
Q Consensus 103 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~-----------d~~~lasgs~Dg~--V~iWd~~~~~~ 169 (1088)
|.... .+++++..+ -.|.++.+.|.-. +-..+.+++.+-. ++-+.+.+...
T Consensus 88 d~~~~---------------~Llkt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~ 151 (792)
T KOG1963|consen 88 DWSDG---------------ELLKTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDS 151 (792)
T ss_pred cCCCc---------------EEEEEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccc
Confidence 98853 333333222 2233333322000 1111221211111 11111111000
Q ss_pred --EEEeccC--CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccc
Q 001391 170 --ILEVHSP--ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (1088)
Q Consensus 170 --~~~~~~~--~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 245 (1088)
...+..+ ..++++ .+.+.. ..-..+..+.+|+..... . .
T Consensus 152 ~~~d~~~~~~~~~~I~~-------~~~ge~-~~i~~~~~~~~~~v~~~~--~---------------------------~ 194 (792)
T KOG1963|consen 152 AKGDFLKEHQEPKSIVD-------NNSGEF-KGIVHMCKIHIYFVPKHT--K---------------------------H 194 (792)
T ss_pred cchhhhhhhcCCccEEE-------cCCceE-EEEEEeeeEEEEEecccc--e---------------------------e
Confidence 0000001 122222 233333 333345567788776110 0 0
Q ss_pred eeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEE
Q 001391 246 AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIIT 323 (1088)
Q Consensus 246 ~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~s 323 (1088)
......-..|...+++.+++|++++++++..||.|.+|.-..... ..... ..+.-|...|.++.|+ |.+|+|
T Consensus 195 ~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-----~~~t~-t~lHWH~~~V~~L~fS~~G~~LlS 268 (792)
T KOG1963|consen 195 TSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-----DSETC-TLLHWHHDEVNSLSFSSDGAYLLS 268 (792)
T ss_pred eccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccc-----ccccc-eEEEecccccceeEEecCCceEee
Confidence 001111235777799999999999999999999999997544111 11111 2666788999999998 899999
Q ss_pred EeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCC-CCCcccCCccccccCCCcceE
Q 001391 324 AGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIF 401 (1088)
Q Consensus 324 g~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~ 401 (1088)
||..|.+.+|.+ +++ .+-+..-.. +|..+.++||+.+.+....|+.|.+-..... ...++.+-.. .
T Consensus 269 GG~E~VLv~Wq~~T~~-kqfLPRLgs-~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~------~---- 336 (792)
T KOG1963|consen 269 GGREGVLVLWQLETGK-KQFLPRLGS-PILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKP------P---- 336 (792)
T ss_pred cccceEEEEEeecCCC-cccccccCC-eeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccC------C----
Confidence 999999999999 444 333444444 8999999999999999999999999877332 1111111110 0
Q ss_pred EeeeCCCccceeeccCCCCceEEEEecc-CCeEEEEecCCeEEEEEeccCCcceeEEeee-ecCCcc----eEEEecCCC
Q 001391 402 SIKIPNFSEQIRLTDSKSEYVRCLHLTS-EDTLYIATNHGYLYHTKLCDMDSVNWNKILQ-VSEGMP----IICMDLLSN 475 (1088)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~-~~~~~~----i~~l~~~~~ 475 (1088)
.+.. -....+-.+.+++.| .+.++..+..|.+..+++.......-..+.. ...... +...++..
T Consensus 337 ---~~~~------k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~- 406 (792)
T KOG1963|consen 337 ---TPST------KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVAR- 406 (792)
T ss_pred ---Cccc------cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehh-
Confidence 0000 011223456677777 4566666777777777776655432111111 111111 11111111
Q ss_pred CCCCcCCCCCeEEEec--------CCC--CEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecC-CCeEEEEECCC
Q 001391 476 EPKYPCGIDDWVALGD--------GKG--NMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSL-GHRFIFTADPK 544 (1088)
Q Consensus 476 ~~~~s~~~~~~la~g~--------~dg--~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~L~s~~~d 544 (1088)
...+.+++++. .|| .+++|....... ...+..... .+++....+.....+ ....+++++.|
T Consensus 407 -----~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~k--t~~L~T~I~-~PH~~~~vat~~~~~~rs~~~vta~~d 478 (792)
T KOG1963|consen 407 -----SRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSK--TFILNTKIN-NPHGNAFVATIFLNPTRSVRCVTASVD 478 (792)
T ss_pred -----hccceEEEEeeeeehhhhccCceEEEEEEEEcCCcc--eeEEEEEEe-cCCCceeEEEEEecCcccceeEEeccC
Confidence 11245666543 233 577888765432 223332222 233323222222333 33378899999
Q ss_pred CeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCc
Q 001391 545 GRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (1088)
Q Consensus 545 g~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~ 611 (1088)
|.+++|-+.+....... ...+....+.. -|..++++++||.||.+|++| .+++|.|||..+
T Consensus 479 g~~KiW~~~~~~n~~k~--~s~W~c~~i~s---y~k~~i~a~~fs~dGslla~s-~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 479 GDFKIWVFTDDSNIYKK--SSNWTCKAIGS---YHKTPITALCFSQDGSLLAVS-FDDTITIWDYDT 539 (792)
T ss_pred CeEEEEEEecccccCcC--ccceEEeeeec---cccCcccchhhcCCCcEEEEe-cCCEEEEecCCC
Confidence 99999999654432221 12222222222 378899999999999888664 677999999887
No 139
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.77 E-value=3.4e-16 Score=174.96 Aligned_cols=270 Identities=12% Similarity=0.102 Sum_probs=186.7
Q ss_pred CCCCCceEEecCCCcee------eeeEEEEEeccCCCCCCCCEE-EEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEE
Q 001391 1 MGKKDLSEWRLDVGQYL------GEISALCFVHLPSHLSSLPFL-LAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~~~------~~V~~v~fs~~pd~~~~~~~l-aag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~ 72 (1088)
+.|++|++||+.+++.. ..+.+++|+ |+ ++.+ +++. ++.|++||..+++.+..+..+. .+..++
T Consensus 8 ~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~--~d----g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~ 79 (300)
T TIGR03866 8 EKDNTISVIDTATLEVTRTFPVGQRPRGITLS--KD----GKLLYVCASDSDTIQVIDLATGEVIGTLPSGP--DPELFA 79 (300)
T ss_pred cCCCEEEEEECCCCceEEEEECCCCCCceEEC--CC----CCEEEEEECCCCeEEEEECCCCcEEEeccCCC--CccEEE
Confidence 46899999999988722 236789999 98 7766 4454 6999999999998887776533 356788
Q ss_pred ecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEE
Q 001391 73 CNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1088)
Q Consensus 73 ~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la 151 (1088)
++ |+++ .++++. .++.+++||+... +.+..+.. ...+.+++|+| ++.+++
T Consensus 80 ~~-------~~g~---~l~~~~~~~~~l~~~d~~~~---------------~~~~~~~~-~~~~~~~~~~~---dg~~l~ 130 (300)
T TIGR03866 80 LH-------PNGK---ILYIANEDDNLVTVIDIETR---------------KVLAEIPV-GVEPEGMAVSP---DGKIVV 130 (300)
T ss_pred EC-------CCCC---EEEEEcCCCCeEEEEECCCC---------------eEEeEeeC-CCCcceEEECC---CCCEEE
Confidence 88 7763 444444 4799999999742 23333332 23468899999 999999
Q ss_pred EEEcCC-cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEE-EEecCCeEEEEEeccCccccCCCCCCCccCCC
Q 001391 152 IGCSDN-SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (1088)
Q Consensus 152 sgs~Dg-~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~-sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~ 229 (1088)
++..++ .+.+||..+++....+..... ...+.+ ++++..++ ++..++.|++||+.
T Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~---s~dg~~l~~~~~~~~~v~i~d~~------------------ 187 (300)
T TIGR03866 131 NTSETTNMAHFIDTKTYEIVDNVLVDQR--PRFAEF---TADGKELWVSSEIGGTVSVIDVA------------------ 187 (300)
T ss_pred EEecCCCeEEEEeCCCCeEEEEEEcCCC--ccEEEE---CCCCCEEEEEcCCCCEEEEEEcC------------------
Confidence 888765 567789988877655432222 122333 57787775 45569999999998
Q ss_pred CCCCCceeEecccccceeeeEEEeCC-----C--CCEEEEEEcCCCCEEEE-EECCCcEEEEEcCCCcccCCCCceeeec
Q 001391 230 SSSDFKCFKLQDQQHTAVNLFRLVGH-----E--GSIFRIEWSSCGSKLVS-VSDDRSARIWEVRAEYWKDSDSIEEVGS 301 (1088)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~gh-----~--~~V~~v~~sp~g~~l~s-~s~Dg~v~iWd~~~~~~~~~~~~~~i~~ 301 (1088)
+.+.+..+..+ . .....++|+|++++++. .+.++.+.+||..+.+. +.
T Consensus 188 ---------------~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~--------~~- 243 (300)
T TIGR03866 188 ---------------TRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEV--------LD- 243 (300)
T ss_pred ---------------cceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcE--------EE-
Confidence 33333332211 1 12356889999998544 45567899999987532 22
Q ss_pred eeeeccCcceEEEEEC--CCEEEEE-eCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcC
Q 001391 302 SVLYGHNARVWDCCLT--DSFIITA-GEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDS 358 (1088)
Q Consensus 302 ~~~~~h~~~I~~v~~~--~~~l~sg-~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~ 358 (1088)
. ..+...+++++|+ +.+|+++ +.++.|++||+ +++.+..+.... ..+.++++|
T Consensus 244 -~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~--~~~~~~~~~ 300 (300)
T TIGR03866 244 -Y-LLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGR--LPWGVVVRP 300 (300)
T ss_pred -E-EEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccc--ccceeEeCC
Confidence 1 1234578899998 5677775 56899999999 778788887543 468998875
No 140
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.77 E-value=1.4e-17 Score=183.46 Aligned_cols=331 Identities=13% Similarity=0.146 Sum_probs=199.0
Q ss_pred EEEEEcC---CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEc
Q 001391 260 FRIEWSS---CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWG 334 (1088)
Q Consensus 260 ~~v~~sp---~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd 334 (1088)
++..|++ ....|+.+.+||.|.++|....... .++-.......|...|.++.|- ...|++++.|.++++||
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr----~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wd 128 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR----LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWD 128 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcc----hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeee
Confidence 4466765 3356888999999999998775430 0111112567799999999998 47899999999999999
Q ss_pred C-CCceeEE--EcccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCcc
Q 001391 335 S-DGKQLKM--IKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSE 410 (1088)
Q Consensus 335 ~-~~~~~~~--~~~h~~~~V~~l~~~~dg-~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (1088)
+ .+++... +.+|.+ .|.+++|.|.. ..+++||+||.|.|||++-.....++... ..++.
T Consensus 129 vk~s~l~G~~~~~GH~~-SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~--------~~~~~-------- 191 (720)
T KOG0321|consen 129 VKTSRLVGGRLNLGHTG-SVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFD--------NRIYG-------- 191 (720)
T ss_pred eccceeecceeeccccc-ccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHh--------hhhhc--------
Confidence 9 5555544 889999 79999999865 47899999999999999532211111000 00000
Q ss_pred ceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEe
Q 001391 411 QIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALG 490 (1088)
Q Consensus 411 ~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g 490 (1088)
.+.+.- .|. + ....+..+|. .........|..+.+ .++..||++
T Consensus 192 ------~~n~~p-----tps-k--------------p~~kr~~k~k-A~s~ti~ssvTvv~f---------kDe~tlaSa 235 (720)
T KOG0321|consen 192 ------RHNTAP-----TPS-K--------------PLKKRIRKWK-AASNTIFSSVTVVLF---------KDESTLASA 235 (720)
T ss_pred ------cccCCC-----CCC-c--------------hhhccccccc-cccCceeeeeEEEEE---------eccceeeec
Confidence 000000 000 0 0000001110 000000111222222 355788888
Q ss_pred cC-CCCEEEEEEcCCCcCcceee--eeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCccc
Q 001391 491 DG-KGNMTIVRVVGDVHTPQLSF--TFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTN 567 (1088)
Q Consensus 491 ~~-dg~I~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 567 (1088)
+. |+.|++||+..........- ....+....+..-.+.++....|.+|++.+.|+.|++|++........ ...
T Consensus 236 ga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~----~~~ 311 (720)
T KOG0321|consen 236 GAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPV----AEF 311 (720)
T ss_pred cCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCch----hhc
Confidence 87 99999999986543211111 111111111111122233445578888888899999999985431100 000
Q ss_pred ceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeecccccccceeEEEEEe
Q 001391 568 NVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAK 647 (1088)
Q Consensus 568 ~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~ 647 (1088)
...+...|. | .-..|||+.+|++|+.|...++|.++.... +...+.||. -.||.|+|.+
T Consensus 312 sg~~~~sf~------v-ks~lSpd~~~l~SgSsd~~ayiw~vs~~e~------------~~~~l~Ght--~eVt~V~w~p 370 (720)
T KOG0321|consen 312 SGKLNSSFY------V-KSELSPDDCSLLSGSSDEQAYIWVVSSPEA------------PPALLLGHT--REVTTVRWLP 370 (720)
T ss_pred cCcccceee------e-eeecCCCCceEeccCCCcceeeeeecCccC------------ChhhhhCcc--eEEEEEeecc
Confidence 111111111 1 112579999999999999999999987422 334455665 4799999997
Q ss_pred ccCCceEEEEecCCCeEEEEEeecCCc
Q 001391 648 LRSNQTEIRSTGGDGCICYLEYDKDRE 674 (1088)
Q Consensus 648 ~~~~~~~l~t~g~Dg~i~iw~~~~~~~ 674 (1088)
+.. .-++|+++|-.+++|++..+..
T Consensus 371 S~~--t~v~TcSdD~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 371 SAT--TPVATCSDDFRVKIWRLSNGLE 395 (720)
T ss_pred ccC--CCceeeccCcceEEEeccCchh
Confidence 533 3588999999999999976543
No 141
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.77 E-value=1.4e-16 Score=174.19 Aligned_cols=160 Identities=14% Similarity=0.075 Sum_probs=116.4
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCe--eE---EEEeeeCCcceEEEEecccccccCCCccceee
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT--LI---RPFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~--~~---~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~ 89 (1088)
|...|+.+.|+ |- ...+||+|+ |..|+||.+..|- .+ ...-++....|.++.|+|. .| .
T Consensus 78 H~d~VtDl~Fs--pF---~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpT-----aD-----g 142 (1012)
T KOG1445|consen 78 HGDQVTDLGFS--PF---ADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPT-----AD-----G 142 (1012)
T ss_pred ccceeeccCcc--cc---chhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccC-----cC-----c
Confidence 66779999999 74 246888888 8999999998542 22 1223455567899999965 45 6
Q ss_pred EEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC-Cc
Q 001391 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN-SS 168 (1088)
Q Consensus 90 ~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~-~~ 168 (1088)
+++++..+++.|||+.+ .+.+..+.+|.+.|.++.|+. ||.+|++.+.|..|+|||.+. ++
T Consensus 143 il~s~a~g~v~i~D~st---------------qk~~~el~~h~d~vQSa~Wse---DG~llatscKdkqirifDPRa~~~ 204 (1012)
T KOG1445|consen 143 ILASGAHGSVYITDIST---------------QKTAVELSGHTDKVQSADWSE---DGKLLATSCKDKQIRIFDPRASME 204 (1012)
T ss_pred eEEeccCceEEEEEccc---------------CceeecccCCchhhhcccccc---CCceEeeecCCcceEEeCCccCCC
Confidence 88888899999999996 456778889999999999999 999999999999999999875 45
Q ss_pred eEEEeccCCceeEEEEeeecCCCCCcEEEEEec----CCeEEEEEec
Q 001391 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTI----YNEIIVWKVD 211 (1088)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~----dg~I~vwd~~ 211 (1088)
.++..++|....-.-+.+. .+-..|++.+. -.+|++||.+
T Consensus 205 piQ~te~H~~~rdsRv~w~---Gn~~rlisTGF~~~R~reV~~~Dtr 248 (1012)
T KOG1445|consen 205 PIQTTEGHGGMRDSRVLWA---GNWERLISTGFTTKRIREVRAYDTR 248 (1012)
T ss_pred ccccccccccchhheeeec---cchhhhhhcccchhhheeeeeeecc
Confidence 5666665554311112221 11223444332 3678999987
No 142
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=4.8e-17 Score=177.75 Aligned_cols=292 Identities=17% Similarity=0.235 Sum_probs=213.7
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.+-|.||... |. |.+|++|+ ||+|+||.+.||+++++++. .+ -|.+|+|+|. ++- -+||++
T Consensus 399 Htg~Vr~iSvd--p~----G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~-~I~~vaw~P~-----~~~----~vLAvA 461 (733)
T KOG0650|consen 399 HTGLVRSISVD--PS----GEWLASGSDDGTVRIWEIATGRCVRTVQF-DS-EIRSVAWNPL-----SDL----CVLAVA 461 (733)
T ss_pred cCCeEEEEEec--CC----cceeeecCCCCcEEEEEeecceEEEEEee-cc-eeEEEEecCC-----CCc----eeEEEE
Confidence 56889999999 88 99999999 69999999999999999986 44 5999999965 443 455555
Q ss_pred CCCEEEEEEeccCC-------------CCCCCCCCccc-c--------c-cceeeeccCCCCcEEEEEEecccCCCCEEE
Q 001391 95 GEKRVKLFELNFEL-------------SPNSQYQPETC-V--------N-LSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1088)
Q Consensus 95 gd~~v~iw~l~~~~-------------~~~~~~~~~~~-~--------~-~~~~~~l~~h~~~I~~v~f~p~~~d~~~la 151 (1088)
-+..+-|.+...+. .+... .|+.. + . ..-++..-.|...|..|.|+. .|.+|+
T Consensus 462 ~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~-~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr---kGDYla 537 (733)
T KOG0650|consen 462 VGECVLIVNPIFGDRLEVGPTKELLASAPNES-EPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR---KGDYLA 537 (733)
T ss_pred ecCceEEeCccccchhhhcchhhhhhcCCCcc-CCcccceeechhhhhhhccceEEEEecCCccceeeeec---CCceEE
Confidence 44446666644321 00000 01000 0 0 011234446889999999999 999999
Q ss_pred EEEc---CCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCC
Q 001391 152 IGCS---DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAH 228 (1088)
Q Consensus 152 sgs~---Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~ 228 (1088)
|... ...|.|.++.......-+. ..+..+..+.|++. ..+++.++ -..|++||+.
T Consensus 538 tV~~~~~~~~VliHQLSK~~sQ~PF~-kskG~vq~v~FHPs---~p~lfVaT-q~~vRiYdL~----------------- 595 (733)
T KOG0650|consen 538 TVMPDSGNKSVLIHQLSKRKSQSPFR-KSKGLVQRVKFHPS---KPYLFVAT-QRSVRIYDLS----------------- 595 (733)
T ss_pred EeccCCCcceEEEEecccccccCchh-hcCCceeEEEecCC---CceEEEEe-ccceEEEehh-----------------
Confidence 9755 3568888887654443322 22334556667543 33555544 3679999998
Q ss_pred CCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccC
Q 001391 229 GSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN 308 (1088)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~ 308 (1088)
....+..+.....+|..++.+|.|..|+.++.|+.+..+|+.-.. ++.+ ++.-|.
T Consensus 596 ----------------kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlss-------kPyk--~lr~H~ 650 (733)
T KOG0650|consen 596 ----------------KQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSS-------KPYK--TLRLHE 650 (733)
T ss_pred ----------------HHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCc-------chhH--Hhhhhh
Confidence 555566666677889999999999999999999999999998752 3444 788899
Q ss_pred cceEEEEECC--CEEEEEeCCCcEEEEcC---C----C---ceeEEEcccCCC---CeEEEEEcCCCCEEEEEeCCCCEE
Q 001391 309 ARVWDCCLTD--SFIITAGEDCTCRVWGS---D----G---KQLKMIKEHIGR---GIWRCLYDSLSSLLVTAGFDSAIK 373 (1088)
Q Consensus 309 ~~I~~v~~~~--~~l~sg~~Dg~i~vWd~---~----~---~~~~~~~~h~~~---~V~~l~~~~dg~~l~tg~~Dg~I~ 373 (1088)
..+++++|++ .++++|+.||++.|+.- + . -+++.+.+|... +|..+.|+|...+|+++|.||+|+
T Consensus 651 ~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tir 730 (733)
T KOG0650|consen 651 KAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIR 730 (733)
T ss_pred hhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEE
Confidence 9999999995 68999999999999874 1 1 245677888641 488888999999999999999999
Q ss_pred EE
Q 001391 374 VH 375 (1088)
Q Consensus 374 iw 375 (1088)
+|
T Consensus 731 lf 732 (733)
T KOG0650|consen 731 LF 732 (733)
T ss_pred ee
Confidence 98
No 143
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.77 E-value=2.9e-17 Score=170.49 Aligned_cols=250 Identities=17% Similarity=0.234 Sum_probs=174.4
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCC----------------CeeEEEEeeeCCcceEEEEeccccc
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA----------------GTLIRPFQVFHGIRLHGISCNFINC 78 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t----------------g~~~~~~~~~~~~~V~~i~~s~~~~ 78 (1088)
|.+.|.-+.-+ +- +...+.|+=+ .|.|+|||+.. .+.+.++.+|.+ -=++++|||.
T Consensus 150 h~g~~NRvr~~--~~--~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~-EGy~LdWSp~-- 222 (440)
T KOG0302|consen 150 HYGGINRVRVS--RL--GNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKG-EGYGLDWSPI-- 222 (440)
T ss_pred cccccceeeec--cc--CCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCc-cceeeecccc--
Confidence 45667777766 33 1133444433 49999999742 356788888776 4699999954
Q ss_pred ccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccc-eeeeccCCCCcEEEEEEecccCCCCEEEEEEcC
Q 001391 79 TEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLS-LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD 156 (1088)
Q Consensus 79 ~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~-~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~D 156 (1088)
..| .|+++. -+.|++|...++. .+ -...+.+|+..|-+++|+| .....+|+|+.|
T Consensus 223 ---~~g-----~LlsGDc~~~I~lw~~~~g~-------------W~vd~~Pf~gH~~SVEDLqWSp--tE~~vfaScS~D 279 (440)
T KOG0302|consen 223 ---KTG-----RLLSGDCVKGIHLWEPSTGS-------------WKVDQRPFTGHTKSVEDLQWSP--TEDGVFASCSCD 279 (440)
T ss_pred ---ccc-----ccccCccccceEeeeeccCc-------------eeecCccccccccchhhhccCC--ccCceEEeeecC
Confidence 343 444444 4789999988633 11 2245668999999999999 355689999999
Q ss_pred CcEEEEEcCCCce---EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCC
Q 001391 157 NSIRVWDISNSSI---ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (1088)
Q Consensus 157 g~V~iWd~~~~~~---~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~ 233 (1088)
|+|+|||++.+.. +.. +.+ .+-+..+.+ +....+||+|+.||+++|||++.-
T Consensus 280 gsIrIWDiRs~~~~~~~~~-kAh-~sDVNVISW---nr~~~lLasG~DdGt~~iwDLR~~-------------------- 334 (440)
T KOG0302|consen 280 GSIRIWDIRSGPKKAAVST-KAH-NSDVNVISW---NRREPLLASGGDDGTLSIWDLRQF-------------------- 334 (440)
T ss_pred ceEEEEEecCCCccceeEe-ecc-CCceeeEEc---cCCcceeeecCCCceEEEEEhhhc--------------------
Confidence 9999999998833 332 222 222333333 344559999999999999999811
Q ss_pred CceeEecccccceeeeEEEeCCCCCEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCccc------CCCCceeeeceeeec
Q 001391 234 FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWK------DSDSIEEVGSSVLYG 306 (1088)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g-~~l~s~s~Dg~v~iWd~~~~~~~------~~~~~~~i~~~~~~~ 306 (1088)
..+++++.|+-|+.+|++|.|+|.. ..+++++.|.+|.|||+...... .....+.+.+..++-
T Consensus 335 ----------~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFV 404 (440)
T KOG0302|consen 335 ----------KSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFV 404 (440)
T ss_pred ----------cCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEE
Confidence 1457899999999999999999954 67888899999999999764331 001112233335566
Q ss_pred cC--cceEEEEEC---CCEEEEEeCCCcE
Q 001391 307 HN--ARVWDCCLT---DSFIITAGEDCTC 330 (1088)
Q Consensus 307 h~--~~I~~v~~~---~~~l~sg~~Dg~i 330 (1088)
|. ..+-.+.|+ +.++++.+.||.-
T Consensus 405 HqGQke~KevhWH~QiPG~lvsTa~dGfn 433 (440)
T KOG0302|consen 405 HQGQKEVKEVHWHRQIPGLLVSTAIDGFN 433 (440)
T ss_pred ecchhHhhhheeccCCCCeEEEeccccee
Confidence 64 468889998 7899999999854
No 144
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.76 E-value=8.9e-17 Score=164.19 Aligned_cols=323 Identities=14% Similarity=0.182 Sum_probs=219.9
Q ss_pred eeeeeEEEEEeccCC-CCCCCCEEEEEeCCeEEEEECCCC---eeEEEEeee-CCcceEEEEecccccccCCCccceeeE
Q 001391 16 YLGEISALCFVHLPS-HLSSLPFLLAGSGSQVLLYDLEAG---TLIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFE 90 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd-~~~~~~~laag~d~~I~vwd~~tg---~~~~~~~~~-~~~~V~~i~~s~~~~~~~~d~~~~~~~ 90 (1088)
|..+|.+++|. +- +-..-..+|+.++..+.+|++... +.+..+... +...-+.++|+-+ ..++ +.+
T Consensus 37 ~~~~I~gv~fN--~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd----~~~~---~p~ 107 (385)
T KOG1034|consen 37 HNKPIFGVAFN--SFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYD----SNTG---NPF 107 (385)
T ss_pred CCCccceeeee--hhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEec----CCCC---Cee
Confidence 45679999998 31 001123555556689999998653 334444332 3345677777622 1222 267
Q ss_pred EEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce
Q 001391 91 VALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1088)
Q Consensus 91 la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~ 169 (1088)
+|++| -|.|+|.|+.. .++...+.+|.+.|+.+.|+| .+.++|++++.|.+||+|++++..+
T Consensus 108 la~~G~~GvIrVid~~~---------------~~~~~~~~ghG~sINeik~~p--~~~qlvls~SkD~svRlwnI~~~~C 170 (385)
T KOG1034|consen 108 LAAGGYLGVIRVIDVVS---------------GQCSKNYRGHGGSINEIKFHP--DRPQLVLSASKDHSVRLWNIQTDVC 170 (385)
T ss_pred EEeecceeEEEEEecch---------------hhhccceeccCccchhhhcCC--CCCcEEEEecCCceEEEEeccCCeE
Confidence 77776 68999999985 567788999999999999999 2447999999999999999999999
Q ss_pred EEEecc--CCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccccee
Q 001391 170 ILEVHS--PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1088)
Q Consensus 170 ~~~~~~--~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 247 (1088)
+..+.+ .++..+.|+.+ +.++.+|++++.|.+|++|++...+...........++++......+.. ..-
T Consensus 171 v~VfGG~egHrdeVLSvD~---~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~------~~f 241 (385)
T KOG1034|consen 171 VAVFGGVEGHRDEVLSVDF---SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPK------THF 241 (385)
T ss_pred EEEecccccccCcEEEEEE---cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccc------ccc
Confidence 988763 33455778877 6889999999999999999998544333333223333333221110000 011
Q ss_pred eeE-EEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCccc-----CCC-CceeeeceeeeccCcceEEEEEC---
Q 001391 248 NLF-RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK-----DSD-SIEEVGSSVLYGHNARVWDCCLT--- 317 (1088)
Q Consensus 248 ~~~-~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~-----~~~-~~~~i~~~~~~~h~~~I~~v~~~--- 317 (1088)
+.. ...-|...|-|+.|- |.+++|-|-++.|..|....-... .+. ....+. .+.-....||-+.|.
T Consensus 242 p~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~--~~~~~~c~iWfirf~~d~ 317 (385)
T KOG1034|consen 242 PDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILG--EFDYPMCDIWFIRFAFDP 317 (385)
T ss_pred ccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeee--EeccCccceEEEEEeecH
Confidence 111 334688888888885 578999999999999998322110 000 011222 334455678888887
Q ss_pred -CCEEEEEeCCCcEEEEcCC-Cce--eEEE-cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 318 -DSFIITAGEDCTCRVWGSD-GKQ--LKMI-KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 318 -~~~l~sg~~Dg~i~vWd~~-~~~--~~~~-~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
...|+.|.+.|.+.+||++ ..+ ..++ ....++.|...+|+.|+.+|+....|++|.-||.
T Consensus 318 ~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 318 WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred HHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 5789999999999999993 222 2222 2223456999999999999999999999999986
No 145
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=1.7e-17 Score=186.73 Aligned_cols=285 Identities=13% Similarity=0.127 Sum_probs=194.6
Q ss_pred cEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce----EEEeccCCceeEEEEe-eecCCCCCcEEEEEecCCeEEEE
Q 001391 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI----ILEVHSPERCLLYSMK-LWGDNLEALRIASGTIYNEIIVW 208 (1088)
Q Consensus 134 ~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~----~~~~~~~~~~~~~s~~-~~~~s~~~~~l~sg~~dg~I~vw 208 (1088)
....|...+ +...|+.+|. ..+.||.+..... ..... ......++++ .-+...+.++||+++..|.|.+|
T Consensus 41 ~~nAIs~nr---~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k-~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vW 115 (839)
T KOG0269|consen 41 KANAISVNR---DINQIVVAGR-SLLKLYAINPNDFSEKCNHRFK-TKQNKFYSAADVKWGQLYSNLIATCSTNGVISVW 115 (839)
T ss_pred ccceEeecC---CcceeEEecc-cceeeEeeCcccCCcceeeecc-cccceeeehhhcccccchhhhheeecCCCcEEEE
Confidence 455667777 7777887763 4678887754321 11111 1222233321 11124567899999999999999
Q ss_pred EeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCC-CEEEEEECCCcEEEEEcCC
Q 001391 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRA 287 (1088)
Q Consensus 209 d~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g-~~l~s~s~Dg~v~iWd~~~ 287 (1088)
|+.- ....+.+..|..|+..+.++.|++.. .+|+|||.||+|++||++.
T Consensus 116 dlnk------------------------------~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~ 165 (839)
T KOG0269|consen 116 DLNK------------------------------SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS 165 (839)
T ss_pred ecCc------------------------------cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec
Confidence 9980 01356677889999999999999854 6789999999999999998
Q ss_pred CcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcC--CCceeEEEcccCCCCeEEEEEcCCCCE
Q 001391 288 EYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLSSL 362 (1088)
Q Consensus 288 ~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~--~~~~~~~~~~h~~~~V~~l~~~~dg~~ 362 (1088)
.+. . .++.+....|.++.|+ +..|+++.+.|.+++||+ ..++..++..|.+ +|.++.|+|++.+
T Consensus 166 ~~S--------~--~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G-pV~c~nwhPnr~~ 234 (839)
T KOG0269|consen 166 KKS--------K--STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNG-PVLCLNWHPNREW 234 (839)
T ss_pred ccc--------c--ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccC-ceEEEeecCCCce
Confidence 643 2 2667788899999998 689999999999999999 4577788999999 8999999999999
Q ss_pred EEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEe----c
Q 001391 363 LVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT----N 438 (1088)
Q Consensus 363 l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t----~ 438 (1088)
|||||+|+.|+||+..+... .+...+. ...+|.+++|-|+....+++ .
T Consensus 235 lATGGRDK~vkiWd~t~~~~---------------~~~~tIn-------------Tiapv~rVkWRP~~~~hLAtcsmv~ 286 (839)
T KOG0269|consen 235 LATGGRDKMVKIWDMTDSRA---------------KPKHTIN-------------TIAPVGRVKWRPARSYHLATCSMVV 286 (839)
T ss_pred eeecCCCccEEEEeccCCCc---------------cceeEEe-------------ecceeeeeeeccCccchhhhhhccc
Confidence 99999999999999964321 1111221 12468899999977444332 3
Q ss_pred CCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEc
Q 001391 439 HGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVV 502 (1088)
Q Consensus 439 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~ 502 (1088)
+-.|+.|++...--. . ..+.. +...+..+.+.. .+...+.+++.||.+..-.+.
T Consensus 287 dtsV~VWDvrRPYIP-~-~t~~e-H~~~vt~i~W~~-------~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 287 DTSVHVWDVRRPYIP-Y-ATFLE-HTDSVTGIAWDS-------GDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred cceEEEEeecccccc-c-eeeec-cCccccceeccC-------CCceeeEeecCccHHHHhhhh
Confidence 334665554332211 1 11222 233444444422 345677788888877654443
No 146
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.4e-16 Score=169.46 Aligned_cols=285 Identities=12% Similarity=0.201 Sum_probs=209.5
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCC--CeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA--GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t--g~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~ 93 (1088)
.+.|++|.|+ |. ..+|+++. |++++||-+.. ...+..+.. .+.+|....|. |+|. ..+++
T Consensus 213 ~~~I~sv~FH--p~----~plllvaG~d~~lrifqvDGk~N~~lqS~~l-~~fPi~~a~f~-------p~G~---~~i~~ 275 (514)
T KOG2055|consen 213 HGGITSVQFH--PT----APLLLVAGLDGTLRIFQVDGKVNPKLQSIHL-EKFPIQKAEFA-------PNGH---SVIFT 275 (514)
T ss_pred cCCceEEEec--CC----CceEEEecCCCcEEEEEecCccChhheeeee-ccCccceeeec-------CCCc---eEEEe
Confidence 4789999999 98 66666655 99999998753 345555553 55589999999 7773 46666
Q ss_pred EC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCC-CcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEE
Q 001391 94 FG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS-HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL 171 (1088)
Q Consensus 94 ~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~ 171 (1088)
++ .+....||+.... ...+..+.++. ..+....++| ++++||..|..|.|.+-...+++.+.
T Consensus 276 s~rrky~ysyDle~ak-------------~~k~~~~~g~e~~~~e~FeVSh---d~~fia~~G~~G~I~lLhakT~eli~ 339 (514)
T KOG2055|consen 276 SGRRKYLYSYDLETAK-------------VTKLKPPYGVEEKSMERFEVSH---DSNFIAIAGNNGHIHLLHAKTKELIT 339 (514)
T ss_pred cccceEEEEeeccccc-------------cccccCCCCcccchhheeEecC---CCCeEEEcccCceEEeehhhhhhhhh
Confidence 65 6789999998654 44555555655 4567788889 99999999999999999999999887
Q ss_pred EeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEE
Q 001391 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (1088)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1088)
+++-.. .+..++| +.++..|++.+.+|.|.+||++ ...++++
T Consensus 340 s~KieG--~v~~~~f---sSdsk~l~~~~~~GeV~v~nl~---------------------------------~~~~~~r 381 (514)
T KOG2055|consen 340 SFKIEG--VVSDFTF---SSDSKELLASGGTGEVYVWNLR---------------------------------QNSCLHR 381 (514)
T ss_pred eeeecc--EEeeEEE---ecCCcEEEEEcCCceEEEEecC---------------------------------CcceEEE
Confidence 776433 2344444 3567888888899999999999 4556666
Q ss_pred EeCCCCCE--EEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEe--
Q 001391 252 LVGHEGSI--FRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG-- 325 (1088)
Q Consensus 252 ~~gh~~~V--~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~-- 325 (1088)
+.. .+.| +.++.++++.++|+||..|.|.|||..+... +..++++. .+..-...|+++.|+ .++|+.++
T Consensus 382 f~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~--s~~PkPik--~~dNLtt~Itsl~Fn~d~qiLAiaS~~ 456 (514)
T KOG2055|consen 382 FVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFA--STNPKPIK--TVDNLTTAITSLQFNHDAQILAIASRV 456 (514)
T ss_pred Eee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhc--cCCCCchh--hhhhhheeeeeeeeCcchhhhhhhhhc
Confidence 552 3444 4566679999999999999999999765422 12234554 556666789999998 35655555
Q ss_pred CCCcEEEEcC-CCceeEEEcc---cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 326 EDCTCRVWGS-DGKQLKMIKE---HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 326 ~Dg~i~vWd~-~~~~~~~~~~---h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
.+..+|+-.+ .-.....+.. .-+ .|+|++|+|.+.+++.|..+|.+.+|.+.
T Consensus 457 ~knalrLVHvPS~TVFsNfP~~n~~vg-~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 457 KKNALRLVHVPSCTVFSNFPTSNTKVG-HVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cccceEEEeccceeeeccCCCCCCccc-ceEEEEecCCCceEEeecCCCceeeEeec
Confidence 5667888776 3333333322 223 48999999999999999999999999873
No 147
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=7.9e-17 Score=171.44 Aligned_cols=282 Identities=15% Similarity=0.215 Sum_probs=203.2
Q ss_pred cceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEeccc
Q 001391 66 IRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (1088)
Q Consensus 66 ~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~ 144 (1088)
.+|.+|.|+ |.. .++.++| |++++||.++... ...++.+.--.-+|.+.+|.|
T Consensus 214 ~~I~sv~FH-------p~~----plllvaG~d~~lrifqvDGk~-------------N~~lqS~~l~~fPi~~a~f~p-- 267 (514)
T KOG2055|consen 214 GGITSVQFH-------PTA----PLLLVAGLDGTLRIFQVDGKV-------------NPKLQSIHLEKFPIQKAEFAP-- 267 (514)
T ss_pred CCceEEEec-------CCC----ceEEEecCCCcEEEEEecCcc-------------ChhheeeeeccCccceeeecC--
Confidence 379999999 554 4555555 9999999998543 345666666668899999999
Q ss_pred CCCC-EEEEEEcCCcEEEEEcCCCceEEE--eccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCC
Q 001391 145 NGNR-SLAIGCSDNSIRVWDISNSSIILE--VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNS 221 (1088)
Q Consensus 145 ~d~~-~lasgs~Dg~V~iWd~~~~~~~~~--~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~ 221 (1088)
+|. .+++++.......||+.+.+.... ..+.+. .++..+.-++++.+|+..+..|.|.+....
T Consensus 268 -~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~---~~~e~FeVShd~~fia~~G~~G~I~lLhak---------- 333 (514)
T KOG2055|consen 268 -NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEE---KSMERFEVSHDSNFIAIAGNNGHIHLLHAK---------- 333 (514)
T ss_pred -CCceEEEecccceEEEEeeccccccccccCCCCccc---chhheeEecCCCCeEEEcccCceEEeehhh----------
Confidence 998 899999999999999988765432 222222 233334447889999999999999999887
Q ss_pred CCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeec
Q 001391 222 PEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS 301 (1088)
Q Consensus 222 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~ 301 (1088)
++..+..++ -++.|..++|+.+++.|+.++.+|.|.+||++...+ +..
T Consensus 334 -----------------------T~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~--------~~r 381 (514)
T KOG2055|consen 334 -----------------------TKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC--------LHR 381 (514)
T ss_pred -----------------------hhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce--------EEE
Confidence 556666555 568899999999999999999999999999998643 221
Q ss_pred eeeeccCcceEEEEE--CCCEEEEEeCCCcEEEEcC-------CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeC--CC
Q 001391 302 SVLYGHNARVWDCCL--TDSFIITAGEDCTCRVWGS-------DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF--DS 370 (1088)
Q Consensus 302 ~~~~~h~~~I~~v~~--~~~~l~sg~~Dg~i~vWd~-------~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~--Dg 370 (1088)
+...|-- .=+++|. .+.+|++|+..|.|.|||. ..+++..+..-.. .|+++.|++|+++|+.++. +.
T Consensus 382 f~D~G~v-~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~kn 459 (514)
T KOG2055|consen 382 FVDDGSV-HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTT-AITSLQFNHDAQILAIASRVKKN 459 (514)
T ss_pred EeecCcc-ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhe-eeeeeeeCcchhhhhhhhhcccc
Confidence 1222211 1134444 4899999999999999996 2356666666555 6999999999999887774 67
Q ss_pred CEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCC-eEEEEecCCeEEEEEe
Q 001391 371 AIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIATNHGYLYHTKL 447 (1088)
Q Consensus 371 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~-~ll~~t~~g~i~~~~~ 447 (1088)
.+|+-.+... .+|+ ..|.. +..-+.|+|++|+|.+ .+.++..+|++..|++
T Consensus 460 alrLVHvPS~------------------TVFs-NfP~~-------n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 460 ALRLVHVPSC------------------TVFS-NFPTS-------NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred ceEEEeccce------------------eeec-cCCCC-------CCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 7888776321 1111 01111 1223579999999965 5555666777776554
No 148
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.76 E-value=1e-16 Score=163.83 Aligned_cols=309 Identities=16% Similarity=0.241 Sum_probs=216.9
Q ss_pred EEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeecc--CCCCcE
Q 001391 58 RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP--RLSHWV 135 (1088)
Q Consensus 58 ~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~--~h~~~I 135 (1088)
..++..+..+|.+++|.+... .+ ....+|+.|.+.+.+|+...+. -...++.+. .|....
T Consensus 31 ~~l~ed~~~~I~gv~fN~~~~---~~---e~~vfatvG~~rvtiy~c~~d~------------~ir~lq~y~D~d~~Esf 92 (385)
T KOG1034|consen 31 NHLKEDHNKPIFGVAFNSFLG---CD---EPQVFATVGGNRVTIYECPGDG------------GIRLLQSYADEDHDESF 92 (385)
T ss_pred eehhccCCCccceeeeehhcC---CC---CCceEEEeCCcEEEEEEECCcc------------ceeeeeeccCCCCCcce
Confidence 334444556899999984321 11 1278999999999999987432 123444432 366778
Q ss_pred EEEEEecccCC-CCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCc
Q 001391 136 FDVCFLKVCNG-NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (1088)
Q Consensus 136 ~~v~f~p~~~d-~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~ 214 (1088)
+.++|.-...+ ..+||.||.-|.|+|.|+.++++...+.+|..+ +..+.+++. +.++|++++.|..|++|+++
T Consensus 93 ytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~s-INeik~~p~--~~qlvls~SkD~svRlwnI~--- 166 (385)
T KOG1034|consen 93 YTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGS-INEIKFHPD--RPQLVLSASKDHSVRLWNIQ--- 166 (385)
T ss_pred EEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCcc-chhhhcCCC--CCcEEEEecCCceEEEEecc---
Confidence 88888763323 358999999999999999999998888776543 445565533 35799999999999999999
Q ss_pred cccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE---eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCccc
Q 001391 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL---VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK 291 (1088)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~ 291 (1088)
+..++..| .||.+.|.++.|+++|.+++|++.|.++++|++..++..
T Consensus 167 ------------------------------~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~ 216 (385)
T KOG1034|consen 167 ------------------------------TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFK 216 (385)
T ss_pred ------------------------------CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHh
Confidence 56666665 479999999999999999999999999999999854321
Q ss_pred C------------CC---Cc--eeeece-eeeccCcceEEEEECCCEEEEEeCCCcEEEEcC-C-C-------------c
Q 001391 292 D------------SD---SI--EEVGSS-VLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-D-G-------------K 338 (1088)
Q Consensus 292 ~------------~~---~~--~~i~~~-~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~-~-------------~ 338 (1088)
. +. +. ..+..+ +..-|...|-|+.|.++++++-+-++.|..|.. . + .
T Consensus 217 ~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~T 296 (385)
T KOG1034|consen 217 NKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATT 296 (385)
T ss_pred hhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCcccee
Confidence 0 00 00 001001 334588889999999999999999999999987 1 1 1
Q ss_pred eeEEEcccCCCCeEEEEE--cCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeecc
Q 001391 339 QLKMIKEHIGRGIWRCLY--DSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTD 416 (1088)
Q Consensus 339 ~~~~~~~h~~~~V~~l~~--~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (1088)
.+..+..... .||-+.| .|-++.||.|...|.|.+||++........ .+. -.
T Consensus 297 i~~~~~~~~c-~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~t-------------tl~------------~s 350 (385)
T KOG1034|consen 297 ILGEFDYPMC-DIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCT-------------TLT------------HS 350 (385)
T ss_pred eeeEeccCcc-ceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCc-------------eEE------------ec
Confidence 2334444455 4887765 556789999999999999999653211100 000 01
Q ss_pred CCCCceEEEEeccCCeEEE-EecCCeEEEEE
Q 001391 417 SKSEYVRCLHLTSEDTLYI-ATNHGYLYHTK 446 (1088)
Q Consensus 417 ~~~~~V~~l~~s~~~~ll~-~t~~g~i~~~~ 446 (1088)
.....|+..+|+.++.+++ .+.++.+.+|+
T Consensus 351 ~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 351 KSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred cccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 1234699999999996655 46777777654
No 149
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.1e-18 Score=194.46 Aligned_cols=234 Identities=23% Similarity=0.355 Sum_probs=194.7
Q ss_pred cCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEE
Q 001391 129 PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVW 208 (1088)
Q Consensus 129 ~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vw 208 (1088)
..|...|.++..-. .++.+++|+.|..+-+|.+.....+..+.+|+. .+-++.| +.+..+|++|+.+|+|++|
T Consensus 25 ~~hsaav~~lk~~~---s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hes-pIeSl~f---~~~E~LlaagsasgtiK~w 97 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRK---SSRSLVTGGEDEKVNLWAIGKPNAITSLTGHES-PIESLTF---DTSERLLAAGSASGTIKVW 97 (825)
T ss_pred hhhhhhhceeeeec---cceeeccCCCceeeccccccCCchhheeeccCC-cceeeec---CcchhhhcccccCCceeee
Confidence 36888888888866 788999999999999999987766666666654 4556666 5678899999999999999
Q ss_pred EeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001391 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE 288 (1088)
Q Consensus 209 d~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~ 288 (1088)
|++ ..+.++.+.||...+.+|.|+|-+.+.++++.|..+++||.+..
T Consensus 98 Dle---------------------------------eAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~ 144 (825)
T KOG0267|consen 98 DLE---------------------------------EAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK 144 (825)
T ss_pred ehh---------------------------------hhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc
Confidence 999 77888899999999999999999999999999999999999864
Q ss_pred cccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEE
Q 001391 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVT 365 (1088)
Q Consensus 289 ~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~t 365 (1088)
.+ .. ...+|...+..+.|+ |.++++|++|.+++|||+ .|+.+..|+.|.+ .+.++.|+|..-++++
T Consensus 145 Gc--------~~--~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~ 213 (825)
T KOG0267|consen 145 GC--------SH--TYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAP 213 (825)
T ss_pred Cc--------ee--eecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccc-cccccccCchhhhhcc
Confidence 33 32 677799999999998 679999999999999999 8999999999999 5999999999999999
Q ss_pred EeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeE
Q 001391 366 AGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYL 442 (1088)
Q Consensus 366 g~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i 442 (1088)
||.|+++++||+++-.+ .. ..+.....|++.+|+|+++.+..+....+
T Consensus 214 Gs~d~tv~f~dletfe~------------------I~-----------s~~~~~~~v~~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 214 GSSDRTVRFWDLETFEV------------------IS-----------SGKPETDGVRSLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred CCCCceeeeeccceeEE------------------ee-----------ccCCccCCceeeeecCCceeeecCchhhh
Confidence 99999999999963110 00 01112356999999999987776654443
No 150
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.75 E-value=2.4e-15 Score=168.06 Aligned_cols=266 Identities=14% Similarity=0.135 Sum_probs=180.9
Q ss_pred CEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCC
Q 001391 36 PFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQ 113 (1088)
Q Consensus 36 ~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~ 113 (1088)
++++++. |+.|++||+.+++.+..+..+. .+.+++|+ |+++ .++++. .++.|++||....
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~--~~~~l~~~-------~dg~---~l~~~~~~~~~v~~~d~~~~------ 63 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ--RPRGITLS-------KDGK---LLYVCASDSDTIQVIDLATG------ 63 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC--CCCceEEC-------CCCC---EEEEEECCCCeEEEEECCCC------
Confidence 4566655 7999999999999988887643 47889999 7773 444444 4799999998753
Q ss_pred CCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEE-EcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCC
Q 001391 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192 (1088)
Q Consensus 114 ~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg-s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~ 192 (1088)
+....+..+.. +..++|+| +++.++++ +.|+.|++||+.+.+.+..+..+.. ...+.+ +++
T Consensus 64 ---------~~~~~~~~~~~-~~~~~~~~---~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~--~~~~~~---~~d 125 (300)
T TIGR03866 64 ---------EVIGTLPSGPD-PELFALHP---NGKILYIANEDDNLVTVIDIETRKVLAEIPVGVE--PEGMAV---SPD 125 (300)
T ss_pred ---------cEEEeccCCCC-ccEEEECC---CCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCC--cceEEE---CCC
Confidence 23344444433 56789999 88877554 5689999999998877776653321 233444 578
Q ss_pred CcEEEEEecCC-eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEE
Q 001391 193 ALRIASGTIYN-EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (1088)
Q Consensus 193 ~~~l~sg~~dg-~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l 271 (1088)
+.+++++..++ .+.+||.. +......+. ....+..++|+|+++++
T Consensus 126 g~~l~~~~~~~~~~~~~d~~---------------------------------~~~~~~~~~-~~~~~~~~~~s~dg~~l 171 (300)
T TIGR03866 126 GKIVVNTSETTNMAHFIDTK---------------------------------TYEIVDNVL-VDQRPRFAEFTADGKEL 171 (300)
T ss_pred CCEEEEEecCCCeEEEEeCC---------------------------------CCeEEEEEE-cCCCccEEEECCCCCEE
Confidence 88998887765 46677876 333333332 22345789999999988
Q ss_pred EE-EECCCcEEEEEcCCCcccCCCCceeeeceee-eccCc--ceEEEEEC--CCEE-EEEeCCCcEEEEcC-CCceeEEE
Q 001391 272 VS-VSDDRSARIWEVRAEYWKDSDSIEEVGSSVL-YGHNA--RVWDCCLT--DSFI-ITAGEDCTCRVWGS-DGKQLKMI 343 (1088)
Q Consensus 272 ~s-~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~-~~h~~--~I~~v~~~--~~~l-~sg~~Dg~i~vWd~-~~~~~~~~ 343 (1088)
+. +..++.|++||+.+++. ...+. ... ..+.. ....++|+ +.++ ++.+.++.+.+||. +++.+..+
T Consensus 172 ~~~~~~~~~v~i~d~~~~~~-----~~~~~-~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~ 245 (300)
T TIGR03866 172 WVSSEIGGTVSVIDVATRKV-----IKKIT-FEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL 245 (300)
T ss_pred EEEcCCCCEEEEEEcCccee-----eeeee-ecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 54 45689999999988643 11111 000 00111 23456777 4554 44456778999999 56655554
Q ss_pred cccCCCCeEEEEEcCCCCEEEEE-eCCCCEEEEEcCC
Q 001391 344 KEHIGRGIWRCLYDSLSSLLVTA-GFDSAIKVHQFQA 379 (1088)
Q Consensus 344 ~~h~~~~V~~l~~~~dg~~l~tg-~~Dg~I~iwd~~~ 379 (1088)
. +.. .+++++|+|++++|+++ +.+|.|++||+.+
T Consensus 246 ~-~~~-~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 246 L-VGQ-RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred E-eCC-CcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 3 333 58999999999998876 5699999999964
No 151
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.75 E-value=1.2e-15 Score=167.93 Aligned_cols=271 Identities=17% Similarity=0.257 Sum_probs=196.3
Q ss_pred ceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d 146 (1088)
.|+.++|- ||| ..++...+..+.+||.+. +.++.++++|.+.|+|++++. |
T Consensus 14 ci~d~afk-------PDG----sqL~lAAg~rlliyD~nd---------------G~llqtLKgHKDtVycVAys~---d 64 (1081)
T KOG1538|consen 14 CINDIAFK-------PDG----TQLILAAGSRLLVYDTSD---------------GTLLQPLKGHKDTVYCVAYAK---D 64 (1081)
T ss_pred chheeEEC-------CCC----ceEEEecCCEEEEEeCCC---------------cccccccccccceEEEEEEcc---C
Confidence 58999999 888 566666677899999885 568889999999999999999 9
Q ss_pred CCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCcc
Q 001391 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (1088)
Q Consensus 147 ~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s 226 (1088)
|+.+|+|+.|..|.+|+-.- + |
T Consensus 65 GkrFASG~aDK~VI~W~~kl----------E---------------G--------------------------------- 86 (1081)
T KOG1538|consen 65 GKRFASGSADKSVIIWTSKL----------E---------------G--------------------------------- 86 (1081)
T ss_pred CceeccCCCceeEEEecccc----------c---------------c---------------------------------
Confidence 99999999999999996410 0 0
Q ss_pred CCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeec
Q 001391 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG 306 (1088)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~ 306 (1088)
+. -..|.+.|.|+.|+|-...|+||+-. ..-+|....+.. ....
T Consensus 87 ----------------------~L-kYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V------------~K~k 130 (1081)
T KOG1538|consen 87 ----------------------IL-KYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSV------------SKHK 130 (1081)
T ss_pred ----------------------ee-eeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhH------------Hhhh
Confidence 00 02488999999999999999999875 456787766421 1222
Q ss_pred cCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEcc--cCCCCeEEEEEcCCC-----CEEEEEeCCCCEEEEEc
Q 001391 307 HNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKE--HIGRGIWRCLYDSLS-----SLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 307 h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~--h~~~~V~~l~~~~dg-----~~l~tg~~Dg~I~iwd~ 377 (1088)
-..++.+++|. |.+++.|-.||+|.+-+..|++...+.. ....+||+++|+|.. ..++......++.+|.+
T Consensus 131 ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L 210 (1081)
T KOG1538|consen 131 SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL 210 (1081)
T ss_pred hheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe
Confidence 34578889997 7899999999999999887766555543 222489999999864 36777777788888887
Q ss_pred CCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeE-EEEecCCeEEEEEeccCCcceeE
Q 001391 378 QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTL-YIATNHGYLYHTKLCDMDSVNWN 456 (1088)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~l-l~~t~~g~i~~~~~~~~~~~~~~ 456 (1088)
.++.+.. .... +....|+.+.++|.+ ++++.++.+. ++........
T Consensus 211 sG~~Igk----~r~L--------------------------~FdP~CisYf~NGEy~LiGGsdk~L~---~fTR~GvrLG 257 (1081)
T KOG1538|consen 211 SGKQIGK----DRAL--------------------------NFDPCCISYFTNGEYILLGGSDKQLS---LFTRDGVRLG 257 (1081)
T ss_pred cceeecc----cccC--------------------------CCCchhheeccCCcEEEEccCCCceE---EEeecCeEEe
Confidence 6643321 0000 122468888888854 5566677665 4443333322
Q ss_pred EeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcC
Q 001391 457 KILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVG 503 (1088)
Q Consensus 457 ~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~ 503 (1088)
.+ +..+.-|+.+.+.|+. +.++.|..||+|-.|++..
T Consensus 258 Tv--g~~D~WIWtV~~~PNs--------Q~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 258 TV--GEQDSWIWTVQAKPNS--------QYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred ec--cccceeEEEEEEccCC--------ceEEEEEccCeeehhhhHH
Confidence 22 2345668888886654 8999999999999998753
No 152
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=4.2e-16 Score=158.11 Aligned_cols=288 Identities=14% Similarity=0.173 Sum_probs=201.6
Q ss_pred eEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCE
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKR 98 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~ 98 (1088)
-.|+.|+ +- |.+||+|. +|.|.|||..|-..-+.+..|-. +|.+++|| +||. .+|.++.|..
T Consensus 26 a~~~~Fs--~~----G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~-pi~sl~WS-------~dgr---~LltsS~D~s 88 (405)
T KOG1273|consen 26 AECCQFS--RW----GDYLAVGCANGRVVIYDFDTFRIARMLSAHVR-PITSLCWS-------RDGR---KLLTSSRDWS 88 (405)
T ss_pred cceEEec--cC----cceeeeeccCCcEEEEEccccchhhhhhcccc-ceeEEEec-------CCCC---EeeeecCCce
Confidence 6799999 88 89999998 79999999999887777777655 79999999 8883 6666677999
Q ss_pred EEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCc
Q 001391 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPER 178 (1088)
Q Consensus 99 v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~ 178 (1088)
|.+||+..+. +++.+. ...+|+.+.|+|.. ....+|+- .+..-.+-++..+....--.....
T Consensus 89 i~lwDl~~gs---------------~l~rir-f~spv~~~q~hp~k-~n~~va~~-~~~sp~vi~~s~~~h~~Lp~d~d~ 150 (405)
T KOG1273|consen 89 IKLWDLLKGS---------------PLKRIR-FDSPVWGAQWHPRK-RNKCVATI-MEESPVVIDFSDPKHSVLPKDDDG 150 (405)
T ss_pred eEEEeccCCC---------------ceeEEE-ccCccceeeecccc-CCeEEEEE-ecCCcEEEEecCCceeeccCCCcc
Confidence 9999998643 333332 56889999999921 22334433 344455555554322111111222
Q ss_pred eeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCC-C
Q 001391 179 CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE-G 257 (1088)
Q Consensus 179 ~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~-~ 257 (1088)
..-.+..-..+.+.|.++++|+..|.+.++|.. +.++++.++--. .
T Consensus 151 dln~sas~~~fdr~g~yIitGtsKGkllv~~a~---------------------------------t~e~vas~rits~~ 197 (405)
T KOG1273|consen 151 DLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE---------------------------------TLECVASFRITSVQ 197 (405)
T ss_pred ccccccccccccCCCCEEEEecCcceEEEEecc---------------------------------hheeeeeeeechhe
Confidence 222222211236789999999999999999998 666777776555 7
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCC-CCceeeeceeeec--cCcceEEEEEC--CCEEEEEe-CCCcEE
Q 001391 258 SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS-DSIEEVGSSVLYG--HNARVWDCCLT--DSFIITAG-EDCTCR 331 (1088)
Q Consensus 258 ~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~-~~~~~i~~~~~~~--h~~~I~~v~~~--~~~l~sg~-~Dg~i~ 331 (1088)
.|..+.++..|++++.-+.|+.||.|++..--.... .-.+... .++. ....-.+++|+ +.+++.++ .-..++
T Consensus 198 ~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~--K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLY 275 (405)
T KOG1273|consen 198 AIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEH--KLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALY 275 (405)
T ss_pred eeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhH--HHHHHHhhhhhhheeecCCccEEEeccccceeEE
Confidence 899999999999999999999999999874211000 0001000 1110 11223567787 56665554 446799
Q ss_pred EEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 332 VWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 332 vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
||.. .|..++.+.+..+...-.+.|+|-...+++- ..|.+.+|...
T Consensus 276 IWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 276 IWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred EEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence 9999 8999999999887678889999988877777 78899999873
No 153
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.74 E-value=3.6e-16 Score=166.47 Aligned_cols=293 Identities=16% Similarity=0.192 Sum_probs=206.8
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC----eeEEEEeeeCCcceEEEEecccccccCCCccceeeE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG----TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFE 90 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg----~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~ 90 (1088)
+.++|++++|+ |. ...++||+|. .|+|-+||+.+. .-+..+..|. ..|.+|.|+|. ... .+
T Consensus 185 ~~~Rit~l~fH--Pt--~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs-~~Vs~l~F~P~-----n~s----~i 250 (498)
T KOG4328|consen 185 TDRRITSLAFH--PT--ENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHS-GPVSGLKFSPA-----NTS----QI 250 (498)
T ss_pred cccceEEEEec--cc--CcceEEEEccCCCcEEEEecCCCCCccCceEEeccCC-ccccceEecCC-----Chh----he
Confidence 56889999999 97 4457888888 699999999532 2344555544 48999999975 332 78
Q ss_pred EEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce-
Q 001391 91 VALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI- 169 (1088)
Q Consensus 91 la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~- 169 (1088)
++++-||+|++-|++... .+.+..+.....++.++.|+. +...++.|..=|...+||++++..
T Consensus 251 ~ssSyDGtiR~~D~~~~i-------------~e~v~s~~~d~~~fs~~d~~~---e~~~vl~~~~~G~f~~iD~R~~~s~ 314 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNI-------------SEEVLSLDTDNIWFSSLDFSA---ESRSVLFGDNVGNFNVIDLRTDGSE 314 (498)
T ss_pred eeeccCceeeeeeecchh-------------hHHHhhcCccceeeeeccccC---CCccEEEeecccceEEEEeecCCcc
Confidence 888889999999998543 444555554556788899987 777777787777999999987654
Q ss_pred EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeee
Q 001391 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (1088)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 249 (1088)
...+..+.. -+.++++.+ ....++|+++.|++.+|||++.- .....++
T Consensus 315 ~~~~~lh~k-KI~sv~~NP--~~p~~laT~s~D~T~kIWD~R~l-----------------------------~~K~sp~ 362 (498)
T KOG4328|consen 315 YENLRLHKK-KITSVALNP--VCPWFLATASLDQTAKIWDLRQL-----------------------------RGKASPF 362 (498)
T ss_pred chhhhhhhc-ccceeecCC--CCchheeecccCcceeeeehhhh-----------------------------cCCCCcc
Confidence 444444444 466777643 34568999999999999999811 0012234
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCc------ceEEEEEC--CCEE
Q 001391 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA------RVWDCCLT--DSFI 321 (1088)
Q Consensus 250 ~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~------~I~~v~~~--~~~l 321 (1088)
.....|...|.++.|||.+..|+|.+.|..|||||..--... ..+. ....|.. ...-..|. .++|
T Consensus 363 lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~----~~p~---~~I~Hn~~t~RwlT~fKA~W~P~~~li 435 (498)
T KOG4328|consen 363 LSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK----DEPL---GTIPHNNRTGRWLTPFKAAWDPDYNLI 435 (498)
T ss_pred eecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc----CCcc---ceeeccCcccccccchhheeCCCccEE
Confidence 556689999999999999988999999999999998511000 1111 2223322 12345566 4789
Q ss_pred EEEeCCCcEEEEcCCCc-eeEEEcccCCCCeEEE-EEcCCCC-EEEEEeCCCCEEEEEc
Q 001391 322 ITAGEDCTCRVWGSDGK-QLKMIKEHIGRGIWRC-LYDSLSS-LLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 322 ~sg~~Dg~i~vWd~~~~-~~~~~~~h~~~~V~~l-~~~~dg~-~l~tg~~Dg~I~iwd~ 377 (1088)
++|-.-..|-|+|-+++ .+..+.......|.++ .|+|-+. +++.++..|.|.||.-
T Consensus 436 ~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 436 VVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred EEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEec
Confidence 99999899999999554 4666655544456654 6899888 5555556788888754
No 154
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=4.3e-18 Score=189.87 Aligned_cols=240 Identities=17% Similarity=0.263 Sum_probs=194.9
Q ss_pred CceEEecCCC-ceeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCC
Q 001391 5 DLSEWRLDVG-QYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGS 82 (1088)
Q Consensus 5 ~i~iWdl~~g-~~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~ 82 (1088)
.+++||.+.. .|...|.++..- .. .+.+++|. +..+-+|.+...-.+..+.+|+. .|.++.|+ +
T Consensus 15 ~Lr~~~~~~~~~hsaav~~lk~~--~s----~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hes-pIeSl~f~-------~ 80 (825)
T KOG0267|consen 15 KLRVWDTREFVAHSAAVGCLKIR--KS----SRSLVTGGEDEKVNLWAIGKPNAITSLTGHES-PIESLTFD-------T 80 (825)
T ss_pred ccccccchhhhhhhhhhceeeee--cc----ceeeccCCCceeeccccccCCchhheeeccCC-cceeeecC-------c
Confidence 3567776544 377788888875 44 78888887 67888999987777778899887 79999999 5
Q ss_pred CccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEE
Q 001391 83 VSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRV 161 (1088)
Q Consensus 83 d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~i 161 (1088)
+. .+|+++. +|+|++||++. .+.+++|.+|...+.+++|+| -+.+.|+|+.|..+++
T Consensus 81 ~E----~LlaagsasgtiK~wDlee---------------Ak~vrtLtgh~~~~~sv~f~P---~~~~~a~gStdtd~~i 138 (825)
T KOG0267|consen 81 SE----RLLAAGSASGTIKVWDLEE---------------AKIVRTLTGHLLNITSVDFHP---YGEFFASGSTDTDLKI 138 (825)
T ss_pred ch----hhhcccccCCceeeeehhh---------------hhhhhhhhccccCcceeeecc---ceEEecccccccccee
Confidence 43 5555544 89999999994 467889999999999999999 9999999999999999
Q ss_pred EEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecc
Q 001391 162 WDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1088)
Q Consensus 162 Wd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 241 (1088)
||+....+...+.++.. .+-.++ ++|+|.++++|+.|.+++|||..
T Consensus 139 wD~Rk~Gc~~~~~s~~~-vv~~l~---lsP~Gr~v~~g~ed~tvki~d~~------------------------------ 184 (825)
T KOG0267|consen 139 WDIRKKGCSHTYKSHTR-VVDVLR---LSPDGRWVASGGEDNTVKIWDLT------------------------------ 184 (825)
T ss_pred hhhhccCceeeecCCcc-eeEEEe---ecCCCceeeccCCcceeeeeccc------------------------------
Confidence 99998888888877543 233444 48999999999999999999998
Q ss_pred cccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CC
Q 001391 242 QQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS 319 (1088)
Q Consensus 242 ~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~ 319 (1088)
.++.+..|++|++.|..+.|+|..-.+++||.|+++++||+++ .+.+. ...+....|.+.+|+ +.
T Consensus 185 ---agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet--------fe~I~--s~~~~~~~v~~~~fn~~~~ 251 (825)
T KOG0267|consen 185 ---AGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET--------FEVIS--SGKPETDGVRSLAFNPDGK 251 (825)
T ss_pred ---ccccccccccccccccccccCchhhhhccCCCCceeeeeccce--------eEEee--ccCCccCCceeeeecCCce
Confidence 7888899999999999999999999999999999999999998 34443 334446789999998 34
Q ss_pred EEEEEeCC
Q 001391 320 FIITAGED 327 (1088)
Q Consensus 320 ~l~sg~~D 327 (1088)
.+++|.+.
T Consensus 252 ~~~~G~q~ 259 (825)
T KOG0267|consen 252 IVLSGEQI 259 (825)
T ss_pred eeecCchh
Confidence 45555443
No 155
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.8e-15 Score=173.94 Aligned_cols=242 Identities=13% Similarity=0.157 Sum_probs=183.8
Q ss_pred cceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccC
Q 001391 66 IRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (1088)
Q Consensus 66 ~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~ 145 (1088)
.+-..|+|. |+|. .+++++.|+.|++|+....... .+ .+.-+...|.+++.
T Consensus 14 ~G~t~i~~d-------~~ge---fi~tcgsdg~ir~~~~~sd~e~-----------P~---ti~~~g~~v~~ia~----- 64 (933)
T KOG1274|consen 14 GGLTLICYD-------PDGE---FICTCGSDGDIRKWKTNSDEEE-----------PE---TIDISGELVSSIAC----- 64 (933)
T ss_pred CceEEEEEc-------CCCC---EEEEecCCCceEEeecCCcccC-----------Cc---hhhccCceeEEEee-----
Confidence 357889998 7873 5666666999999997754200 11 11126788888887
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCc---eEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCC
Q 001391 146 GNRSLAIGCSDNSIRVWDISNSS---IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSP 222 (1088)
Q Consensus 146 d~~~lasgs~Dg~V~iWd~~~~~---~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~ 222 (1088)
++.++++|+.+++|.+|.+.+++ .+..+..+.+...+ +.+|.++|.|+.|-.|++-+..
T Consensus 65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v-------~g~g~~iaagsdD~~vK~~~~~----------- 126 (933)
T KOG1274|consen 65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAV-------SGSGKMIAAGSDDTAVKLLNLD----------- 126 (933)
T ss_pred cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEE-------ecCCcEEEeecCceeEEEEecc-----------
Confidence 55689999999999999998765 45666666665544 3679999999999999999988
Q ss_pred CCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeece
Q 001391 223 EGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS 302 (1088)
Q Consensus 223 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~ 302 (1088)
.......+++|+++|.+|.|+|.+.+||+.+-||.|++|++.++....... .+.+.
T Consensus 127 ----------------------D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~--~v~k~ 182 (933)
T KOG1274|consen 127 ----------------------DSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLT--GVDKD 182 (933)
T ss_pred ----------------------ccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcc--cCCcc
Confidence 667788899999999999999999999999999999999999875421110 00000
Q ss_pred eeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcc--cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 303 VLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKE--HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 303 ~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~--h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
.-......+..++|+ +..++..+.|+.|++|+. .......+.. +.. .+..+.|+|.|.|||+++.||.|.|||.
T Consensus 183 n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss-~~~~~~wsPnG~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 183 NEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSS-KFSDLQWSPNGKYIAASTLDGQILVWNV 261 (933)
T ss_pred ccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccccc-ceEEEEEcCCCcEEeeeccCCcEEEEec
Confidence 001113445678898 468888999999999999 4455555543 333 4889999999999999999999999999
Q ss_pred CC
Q 001391 378 QA 379 (1088)
Q Consensus 378 ~~ 379 (1088)
++
T Consensus 262 ~t 263 (933)
T KOG1274|consen 262 DT 263 (933)
T ss_pred cc
Confidence 75
No 156
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.73 E-value=2.5e-16 Score=168.27 Aligned_cols=269 Identities=14% Similarity=0.151 Sum_probs=195.0
Q ss_pred CEEEEEeCCeEEEEECCCCeeEEEEeeeC-CcceEEEEecccccccCCCccceeeEEEE--ECCCEEEEEEeccCCCCCC
Q 001391 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFH-GIRLHGISCNFINCTEGSVSTRVTFEVAL--FGEKRVKLFELNFELSPNS 112 (1088)
Q Consensus 36 ~~laag~d~~I~vwd~~tg~~~~~~~~~~-~~~V~~i~~s~~~~~~~~d~~~~~~~la~--~gd~~v~iw~l~~~~~~~~ 112 (1088)
.+.++.++..+++||...-+....+..+. ...+..+.|. ... .+++. +||+.+++|.-.... +
T Consensus 4 Nl~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~-------~~n----~lvvas~~gdk~~~~~~K~g~~--~- 69 (673)
T KOG4378|consen 4 NLHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQ-------RRN----FLVVASMAGDKVMRIKEKDGKT--P- 69 (673)
T ss_pred ceeeeccCCceEEeecccccCccccccCCCCCcceeeecc-------ccc----eEEEeecCCceeEEEecccCCC--C-
Confidence 46777777899999998765544444322 2248888887 332 33333 458999999765321 0
Q ss_pred CCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCC
Q 001391 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192 (1088)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~ 192 (1088)
....+..+.+. .-.|++... ...++++||..++|+|||+....+...++.|. ..+..+.+ ...
T Consensus 70 --------~Vp~~~k~~gd--~~~Cv~~~s---~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~-stvt~v~Y---N~~ 132 (673)
T KOG4378|consen 70 --------EVPRVRKLTGD--NAFCVACAS---QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQ-STVTYVDY---NNT 132 (673)
T ss_pred --------ccceeeccccc--hHHHHhhhh---cceeeeccCcCceeeehhhHHHHHhhhccCCc-ceeEEEEe---cCC
Confidence 12334444443 445555555 55799999999999999999776677777776 44555555 456
Q ss_pred CcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCC-CCCEEEEEEcCCCCE-
Q 001391 193 ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH-EGSIFRIEWSSCGSK- 270 (1088)
Q Consensus 193 ~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh-~~~V~~v~~sp~g~~- 270 (1088)
+.+||+++..|.|.|..+. ++.....|... ...|.-+.|+|..++
T Consensus 133 DeyiAsvs~gGdiiih~~~---------------------------------t~~~tt~f~~~sgqsvRll~ys~skr~l 179 (673)
T KOG4378|consen 133 DEYIASVSDGGDIIIHGTK---------------------------------TKQKTTTFTIDSGQSVRLLRYSPSKRFL 179 (673)
T ss_pred cceeEEeccCCcEEEEecc---------------------------------cCccccceecCCCCeEEEeeccccccee
Confidence 7899999999999999988 44444444433 345678999998776
Q ss_pred EEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcCC-CceeEEEccc
Q 001391 271 LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSD-GKQLKMIKEH 346 (1088)
Q Consensus 271 l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~~-~~~~~~~~~h 346 (1088)
|.+++++|.|.+||+..... .+. ....|.++...++|+ +.+|++.+.|..|.+||.. .+....+...
T Consensus 180 L~~asd~G~VtlwDv~g~sp-------~~~--~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~ 250 (673)
T KOG4378|consen 180 LSIASDKGAVTLWDVQGMSP-------IFH--ASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS 250 (673)
T ss_pred eEeeccCCeEEEEeccCCCc-------ccc--hhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeec
Confidence 56789999999999987532 222 567899999999998 4789999999999999994 3334444333
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 347 IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 347 ~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
. |...++|.++|.+|+.|...|.|..||++.
T Consensus 251 ~--Plstvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 251 H--PLSTVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred C--CcceeeecCCceEEEeecCCceEEEEeccc
Confidence 2 689999999999999999999999999965
No 157
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=5.7e-16 Score=164.53 Aligned_cols=243 Identities=15% Similarity=0.191 Sum_probs=173.4
Q ss_pred eEEEEEC-CCEEEEEEeccCCCCCCCCCCc------cccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEE
Q 001391 89 FEVALFG-EKRVKLFELNFELSPNSQYQPE------TCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRV 161 (1088)
Q Consensus 89 ~~la~~g-d~~v~iw~l~~~~~~~~~~~~~------~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~i 161 (1088)
.++|++. +..|.|||+.....-...+.-. .....+.-....+|++.|.++.|+. .-...||+||.|.+|++
T Consensus 193 NyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~--~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 193 NYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNR--NFRNVLASGSADKTVKL 270 (463)
T ss_pred ceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcc--ccceeEEecCCCceEEE
Confidence 5777766 9999999998432111000000 0001111222457999999999987 13468999999999999
Q ss_pred EEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecc
Q 001391 162 WDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1088)
Q Consensus 162 Wd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 241 (1088)
||+.++++..++..+. ..+.++.++.. ....|++|+.|+++.+.|++..
T Consensus 271 WD~~~g~p~~s~~~~~-k~Vq~l~wh~~--~p~~LLsGs~D~~V~l~D~R~~---------------------------- 319 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHG-KKVQTLEWHPY--EPSVLLSGSYDGTVALKDCRDP---------------------------- 319 (463)
T ss_pred EEcCCCCcceehhhcC-CceeEEEecCC--CceEEEeccccceEEeeeccCc----------------------------
Confidence 9999999998887444 34677888654 4679999999999999999821
Q ss_pred cccceeeeEEEeCCCCCEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---
Q 001391 242 QQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--- 317 (1088)
Q Consensus 242 ~~~~~~~~~~~~gh~~~V~~v~~sp~g~-~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--- 317 (1088)
......-.-.+.|-.++|.|... .++++.+||+|+-+|++... +++ +++..|...|.+++++
T Consensus 320 -----~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~-------~~v--wt~~AHd~~ISgl~~n~~~ 385 (463)
T KOG0270|consen 320 -----SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG-------KPV--WTLKAHDDEISGLSVNIQT 385 (463)
T ss_pred -----cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCC-------Cce--eEEEeccCCcceEEecCCC
Confidence 11111112357789999998664 56778899999999999852 444 3889999999999998
Q ss_pred CCEEEEEeCCCcEEEEcCCCceeEEEcccCC--CCeEEEEEcCCCC-EEEEEeCCCCEEEEEcC
Q 001391 318 DSFIITAGEDCTCRVWGSDGKQLKMIKEHIG--RGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 318 ~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~--~~V~~l~~~~dg~-~l~tg~~Dg~I~iwd~~ 378 (1088)
+++++|++.|+++++|++.+..-.....|.- ....|.++.|+-. .++.||..+.+++||+.
T Consensus 386 p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 386 PGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred CcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecc
Confidence 7899999999999999994433333333322 1245666677643 67888888899999984
No 158
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.72 E-value=6e-16 Score=165.40 Aligned_cols=280 Identities=11% Similarity=0.100 Sum_probs=200.8
Q ss_pred CCCCceEEecCCCc-------ee--eeeEEEEEeccCCCCCCCCEEEEEe--CCeEEEEECCCCee--EEEEeeeCCcce
Q 001391 2 GKKDLSEWRLDVGQ-------YL--GEISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTL--IRPFQVFHGIRL 68 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~-------~~--~~V~~v~fs~~pd~~~~~~~laag~--d~~I~vwd~~tg~~--~~~~~~~~~~~V 68 (1088)
...+++|||..... |. -.+..++|. .. ..++++.. |..+++|. +.|+. +.......+..-
T Consensus 10 ~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~--~~----n~lvvas~~gdk~~~~~~-K~g~~~~Vp~~~k~~gd~~ 82 (673)
T KOG4378|consen 10 TGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQ--RR----NFLVVASMAGDKVMRIKE-KDGKTPEVPRVRKLTGDNA 82 (673)
T ss_pred cCCceEEeecccccCccccccCCCCCcceeeecc--cc----ceEEEeecCCceeEEEec-ccCCCCccceeeccccchH
Confidence 34569999987654 11 128888988 54 22444433 57888887 33330 111111122223
Q ss_pred EEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCC
Q 001391 69 HGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN 147 (1088)
Q Consensus 69 ~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~ 147 (1088)
.|++.. .-. .+++++| .+.|+|||+.. ....+.+++|.+.|++|.++- ..
T Consensus 83 ~Cv~~~-------s~S----~y~~sgG~~~~Vkiwdl~~---------------kl~hr~lkdh~stvt~v~YN~---~D 133 (673)
T KOG4378|consen 83 FCVACA-------SQS----LYEISGGQSGCVKIWDLRA---------------KLIHRFLKDHQSTVTYVDYNN---TD 133 (673)
T ss_pred HHHhhh-------hcc----eeeeccCcCceeeehhhHH---------------HHHhhhccCCcceeEEEEecC---Cc
Confidence 333332 221 6666666 79999999983 345677899999999999998 88
Q ss_pred CEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccC
Q 001391 148 RSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHA 227 (1088)
Q Consensus 148 ~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~ 227 (1088)
.+||+++..|.|.|..+.++.....+..+.+..+.-+.+... ...+|.+++.+|.|.+||+.
T Consensus 134 eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~s--kr~lL~~asd~G~VtlwDv~---------------- 195 (673)
T KOG4378|consen 134 EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPS--KRFLLSIASDKGAVTLWDVQ---------------- 195 (673)
T ss_pred ceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccc--cceeeEeeccCCeEEEEecc----------------
Confidence 999999999999999999998887777666655545555322 23467788999999999998
Q ss_pred CCCCCCCceeEecccccceee-eEEEeCCCCCEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeee
Q 001391 228 HGSSSDFKCFKLQDQQHTAVN-LFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (1088)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~-~~~~~gh~~~V~~v~~sp~g-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~ 305 (1088)
...+ ..-...|..+..+|+|+|.. ..|++.+.|+.|.+||....+. .. ..
T Consensus 196 -----------------g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s--------~~---~l 247 (673)
T KOG4378|consen 196 -----------------GMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS--------TD---RL 247 (673)
T ss_pred -----------------CCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc--------cc---ee
Confidence 3333 33456899999999999965 5678999999999999987543 11 12
Q ss_pred ccCcceEEEEEC--CCEEEEEeCCCcEEEEcC--CCceeEEEcccCCCCeEEEEEcCCCCEEEE
Q 001391 306 GHNARVWDCCLT--DSFIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLSSLLVT 365 (1088)
Q Consensus 306 ~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~--~~~~~~~~~~h~~~~V~~l~~~~dg~~l~t 365 (1088)
....+...++|. |.+|+.|...|.|..||+ ...++..+..|.. .|++++|-+.. .+++
T Consensus 248 ~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~-sVt~vafq~s~-tvlt 309 (673)
T KOG4378|consen 248 TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA-SVTRVAFQPSP-TVLT 309 (673)
T ss_pred eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc-ceeEEEeeecc-eeee
Confidence 223467889998 789999999999999999 4578899999998 69999998764 3443
No 159
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.71 E-value=6e-15 Score=159.28 Aligned_cols=503 Identities=12% Similarity=0.110 Sum_probs=275.5
Q ss_pred ceeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 15 QYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 15 ~~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
++...|.|+.++ .+ ...+.++.|..+.+|.-.+........-++.. |....+ +..... ..|+.-+.+++++
T Consensus 12 r~~e~vc~v~w~--~~----eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df-~pt~~h-~~~rs~-~~g~~~d~~~i~s 82 (737)
T KOG1524|consen 12 RNSEKVCCVDWS--SN----EEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDF-VPTDMH-LGGRSS-GGGKGSDTLLICS 82 (737)
T ss_pred ccceeEEeeccc--cc----ceEEEeccCceEEEeecccchhhhhhhCCccc-CCcccc-cccccc-CCCCCcceEEEEc
Confidence 456678899998 55 67777788876666664433322222222221 111111 111111 1111124677888
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.||.+.|.+-. .+..+....|.+.|.+-.|+| ||.-|+|+|.||.|++|.- +|....++.
T Consensus 83 ~DGkf~il~k~----------------~rVE~sv~AH~~A~~~gRW~~---dGtgLlt~GEDG~iKiWSr-sGMLRStl~ 142 (737)
T KOG1524|consen 83 NDGRFVILNKS----------------ARVERSISAHAAAISSGRWSP---DGAGLLTAGEDGVIKIWSR-SGMLRSTVV 142 (737)
T ss_pred CCceEEEeccc----------------chhhhhhhhhhhhhhhcccCC---CCceeeeecCCceEEEEec-cchHHHHHh
Confidence 89999998755 455667789999999999999 9999999999999999985 443332222
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
. ....+|++++-+. ....+++.+ +.+.|=-+. ....+.+.+.
T Consensus 143 Q-~~~~v~c~~W~p~--S~~vl~c~g--~h~~IKpL~---------------------------------~n~k~i~WkA 184 (737)
T KOG1524|consen 143 Q-NEESIRCARWAPN--SNSIVFCQG--GHISIKPLA---------------------------------ANSKIIRWRA 184 (737)
T ss_pred h-cCceeEEEEECCC--CCceEEecC--CeEEEeecc---------------------------------cccceeEEec
Confidence 2 2234677776322 233444433 444444444 3445667789
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEc
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWG 334 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd 334 (1088)
|.+-|.++.|+|....++||++|-..++||-..... +....|..+|++++|.+..++.-+.-.++|+
T Consensus 185 HDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~L-----------f~S~~~ey~ITSva~npd~~~~v~S~nt~R~-- 251 (737)
T KOG1524|consen 185 HDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANL-----------FTSAAEEYAITSVAFNPEKDYLLWSYNTARF-- 251 (737)
T ss_pred cCcEEEEeecCccccceeecCCceeEEeecccCccc-----------ccCChhccceeeeeeccccceeeeeeeeeee--
Confidence 999999999999999999999999999999876432 4677899999999999544333333345551
Q ss_pred CCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc-CCCCC-CcccCCccccccCCCcceEEeeeCCCcc-c
Q 001391 335 SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF-QAFLP-GSLESHPEAKEFNGRTEIFSIKIPNFSE-Q 411 (1088)
Q Consensus 335 ~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 411 (1088)
-+...+ .|..++|++||..+++|...|.+.+=-. +.+.. ..++... .......+ .+... .
T Consensus 252 --------~~p~~G-SifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~~~n~~~t~------~~r~~I~v--rdV~~~v 314 (737)
T KOG1524|consen 252 --------SSPRVG-SIFNLSWSADGTQATCGTSTGQLIVAYAIEQQLVSGNLKATS------KSRKSITV--RDVATGV 314 (737)
T ss_pred --------cCCCcc-ceEEEEEcCCCceeeccccCceEEEeeeehhhhhhccceeEe------eccceEEe--ehhhhhH
Confidence 122334 6999999999999999999997765333 32111 1110000 00000000 00000 0
Q ss_pred eeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEec
Q 001391 412 IRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGD 491 (1088)
Q Consensus 412 ~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~ 491 (1088)
...++- ...|...... -+.++++|+ .++|.+. .+..+-..+..+.... ...+. .....+++.
T Consensus 315 ~d~LE~-p~rv~k~sL~-Y~hLvvaTs-~qvyiys---~knwntpiiidgre~t-r~lie---------q~ek~fli~-- 376 (737)
T KOG1524|consen 315 QDILEF-PQRVVKFSLG-YGHLVVATS-LQVYIYS---EKNWNTPIIIDGREDT-RNLIE---------QGEKYFLIL-- 376 (737)
T ss_pred HHHhhC-ccceeeeeec-eeEEEEEec-cEEEEEe---cCCccCcEEEeccccc-hhHhh---------hhhhheEEe--
Confidence 011111 1234444322 335555553 3455332 2111101122222111 00000 011122222
Q ss_pred CCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEE--ECCCCeEEEEec-CCCCCcccccCCcccc
Q 001391 492 GKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFT--ADPKGRLKLWQL-CDPFSSVCYESSKTNN 568 (1088)
Q Consensus 492 ~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s--~~~dg~i~vwd~-~~~~~~~~~~~~~~~~ 568 (1088)
..-.|.+|..+..... ....+.. ...++.. -..+.....|+. ......+.+||. +.++.....
T Consensus 377 dgsSi~lytyegR~~~-----np~~Pg~-~~dlL~~-rtlsLandtLaird~ad~kvlhlFd~istgk~qgDg------- 442 (737)
T KOG1524|consen 377 DGSSIWLYTYEGRLHL-----NPRYPGS-QIDLLTW-RTLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDG------- 442 (737)
T ss_pred cCcEEEEEEecCceec-----CCCCCCc-ccccccc-eeeecccceEEeecCCCCeeEEeccCCCCCcccCCc-------
Confidence 1235666666532211 0001110 0001000 012333334443 223346677877 444321110
Q ss_pred eeeeeeeccccCceEEEEEee----eCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeecccccccceeEEE
Q 001391 569 VFLVAEFSSCFGARIMCLDAS----FEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLS 644 (1088)
Q Consensus 569 ~~l~~~~~~~h~~~It~l~~s----pdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~ 644 (1088)
+ ...|...|.-++.. ++++.+|.-+.++.++|=.+.+-. ...++-.++ .-|+.++
T Consensus 443 ----k--~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfg-------kee~I~KiG--------TmVhtLa 501 (737)
T KOG1524|consen 443 ----K--SLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFG-------KEEEIYKIG--------TMVHTLA 501 (737)
T ss_pred ----c--ccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcC-------chhhhhhhh--------hhhhhhh
Confidence 0 12455566666654 678899999999999998776522 222333343 3477888
Q ss_pred EEeccCCceEEEEecCCCeEEEEEeec
Q 001391 645 VAKLRSNQTEIRSTGGDGCICYLEYDK 671 (1088)
Q Consensus 645 ~~~~~~~~~~l~t~g~Dg~i~iw~~~~ 671 (1088)
|. +..-++.+=.|+++.+|-++.
T Consensus 502 wn----dttNiLcglqDt~fsVWy~pn 524 (737)
T KOG1524|consen 502 WN----DTTNILCGLQDTCFSVWYYPN 524 (737)
T ss_pred hc----cccceeeeeccceEEEEEcCC
Confidence 88 235688899999999998765
No 160
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=2.9e-15 Score=172.27 Aligned_cols=253 Identities=12% Similarity=0.101 Sum_probs=172.5
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEE
Q 001391 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRV 332 (1088)
Q Consensus 253 ~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~v 332 (1088)
.+|+..-+.|+|.|+|.+|++|+.||.|++|+...... .++ ...-+...|.+++....+|++|+++++|.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e----~P~-----ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~ 80 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE----EPE-----TIDISGELVSSIACYSNHFLTGSEQNTVLR 80 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc----CCc-----hhhccCceeEEEeecccceEEeeccceEEE
Confidence 46888899999999999999999999999999876411 011 222277889999988889999999999999
Q ss_pred EcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccc
Q 001391 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQ 411 (1088)
Q Consensus 333 Wd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (1088)
|.. +++.-..+....- ++..++++.+|.+++.||.|-.|++-+.... .+
T Consensus 81 y~fps~~~~~iL~Rftl-p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~-----------------------------s~ 130 (933)
T KOG1274|consen 81 YKFPSGEEDTILARFTL-PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS-----------------------------SQ 130 (933)
T ss_pred eeCCCCCccceeeeeec-cceEEEEecCCcEEEeecCceeEEEEecccc-----------------------------ch
Confidence 999 5544434444445 7999999999999999999999999887421 01
Q ss_pred eeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEec
Q 001391 412 IRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGD 491 (1088)
Q Consensus 412 ~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~ 491 (1088)
...+.+|.++|.++.|.|++. ++|+.+
T Consensus 131 ~~~lrgh~apVl~l~~~p~~~-----------------------------------------------------fLAvss 157 (933)
T KOG1274|consen 131 EKVLRGHDAPVLQLSYDPKGN-----------------------------------------------------FLAVSS 157 (933)
T ss_pred heeecccCCceeeeeEcCCCC-----------------------------------------------------EEEEEe
Confidence 122334445566666665554 444444
Q ss_pred CCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceee
Q 001391 492 GKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFL 571 (1088)
Q Consensus 492 ~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l 571 (1088)
.||.+++|++.++.+...+.-...........+ ....+++|+|..|+....|+.|++|+.........+
T Consensus 158 ~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i-~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~L---------- 226 (933)
T KOG1274|consen 158 CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRI-CTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKL---------- 226 (933)
T ss_pred cCceEEEEEcccchhhhhcccCCccccccccce-eeeeeecCCCCeEEeeccCCeEEEEccCCceeheee----------
Confidence 444444444444332211110000000000111 112468999888888889999999998865421111
Q ss_pred eeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCc
Q 001391 572 VAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (1088)
Q Consensus 572 ~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~ 611 (1088)
. ..-+...+.++.|||.|+|||+++.||.|.|||+++
T Consensus 227 r---~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 227 R---DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred c---ccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 1 112334499999999999999999999999999985
No 161
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.8e-15 Score=153.67 Aligned_cols=301 Identities=14% Similarity=0.150 Sum_probs=202.1
Q ss_pred ceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecC
Q 001391 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (1088)
Q Consensus 123 ~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d 202 (1088)
++..++.. .. -.|+.|++ .|.+||+|..||.|.|||+.+...-..+..|... +.++++ +++|..|++++.|
T Consensus 16 el~~tld~-~~-a~~~~Fs~---~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~p-i~sl~W---S~dgr~LltsS~D 86 (405)
T KOG1273|consen 16 ELTHTLDN-PL-AECCQFSR---WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRP-ITSLCW---SRDGRKLLTSSRD 86 (405)
T ss_pred hhceeccC-Cc-cceEEecc---CcceeeeeccCCcEEEEEccccchhhhhhccccc-eeEEEe---cCCCCEeeeecCC
Confidence 44444432 22 78999999 9999999999999999999998866666655543 456665 7899999999999
Q ss_pred CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCC-EEEEEECCCcEE
Q 001391 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSAR 281 (1088)
Q Consensus 203 g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~-~l~s~s~Dg~v~ 281 (1088)
..|.+||+. .+.++++++ ...+|+.+.|+|... ..+.+-.+..-.
T Consensus 87 ~si~lwDl~---------------------------------~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~ 132 (405)
T KOG1273|consen 87 WSIKLWDLL---------------------------------KGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPV 132 (405)
T ss_pred ceeEEEecc---------------------------------CCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcE
Confidence 999999998 666777665 568899999999553 333333344455
Q ss_pred EEEcCCCcccCCCCceeeeceeeeccCcc-eEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEc
Q 001391 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNAR-VWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYD 357 (1088)
Q Consensus 282 iWd~~~~~~~~~~~~~~i~~~~~~~h~~~-I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~ 357 (1088)
+-++..+.. ..+. ..-.+.... -.+..|. |+++++|...|.+.+++. +-+++..++-.....|.++.++
T Consensus 133 vi~~s~~~h------~~Lp-~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s 205 (405)
T KOG1273|consen 133 VIDFSDPKH------SVLP-KDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVS 205 (405)
T ss_pred EEEecCCce------eecc-CCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEe
Confidence 555554321 1111 011111111 1222344 899999999999999999 6677777766553369999999
Q ss_pred CCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEe
Q 001391 358 SLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT 437 (1088)
Q Consensus 358 ~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t 437 (1088)
..|+.|+.-+.|+.||.|+++.-...... .+ +.....+..+ ...-.-++++|+.+|.+++++
T Consensus 206 ~~g~~liiNtsDRvIR~ye~~di~~~~r~-----------~e------~e~~~K~qDv-VNk~~Wk~ccfs~dgeYv~a~ 267 (405)
T KOG1273|consen 206 RKGRFLIINTSDRVIRTYEISDIDDEGRD-----------GE------VEPEHKLQDV-VNKLQWKKCCFSGDGEYVCAG 267 (405)
T ss_pred ccCcEEEEecCCceEEEEehhhhcccCcc-----------CC------cChhHHHHHH-HhhhhhhheeecCCccEEEec
Confidence 99999999999999999998521100000 00 0000000000 001123678899999888887
Q ss_pred cCCe--EEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcC
Q 001391 438 NHGY--LYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVG 503 (1088)
Q Consensus 438 ~~g~--i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~ 503 (1088)
+... +| +|....+...+++.|..+.....+++++-. ..+++- ..|.+++|....
T Consensus 268 s~~aHaLY---IWE~~~GsLVKILhG~kgE~l~DV~whp~r--------p~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 268 SARAHALY---IWEKSIGSLVKILHGTKGEELLDVNWHPVR--------PIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred cccceeEE---EEecCCcceeeeecCCchhheeecccccce--------eeeeec-cCCceEEEEeec
Confidence 6433 66 677777777788888887777666665543 344444 789999998753
No 162
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.71 E-value=8.4e-16 Score=159.73 Aligned_cols=214 Identities=19% Similarity=0.286 Sum_probs=160.3
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC----------------ceEEEeccCCceeEEEEe
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS----------------SIILEVHSPERCLLYSMK 185 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~----------------~~~~~~~~~~~~~~~s~~ 185 (1088)
.+......+|.+.|+-+...+.. +..+.|+=+..|.|+||++... +.+.++.++. ..-|.++
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~-~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk-~EGy~Ld 218 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLG-NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHK-GEGYGLD 218 (440)
T ss_pred ccccccccccccccceeeecccC-CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccC-ccceeee
Confidence 34445556788888888888721 3346667788999999998532 2234444333 3455666
Q ss_pred eecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEc
Q 001391 186 LWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS 265 (1088)
Q Consensus 186 ~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~s 265 (1088)
+.+ ...-.+++|.--+.|++|...++. |. .--..|.+|+..|-.++||
T Consensus 219 WSp--~~~g~LlsGDc~~~I~lw~~~~g~-------------------------W~-----vd~~Pf~gH~~SVEDLqWS 266 (440)
T KOG0302|consen 219 WSP--IKTGRLLSGDCVKGIHLWEPSTGS-------------------------WK-----VDQRPFTGHTKSVEDLQWS 266 (440)
T ss_pred ccc--ccccccccCccccceEeeeeccCc-------------------------ee-----ecCccccccccchhhhccC
Confidence 522 123357888888999999987211 10 1122356799999999999
Q ss_pred CCC-CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC----CCc
Q 001391 266 SCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS----DGK 338 (1088)
Q Consensus 266 p~g-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~----~~~ 338 (1088)
|.. ..|+|||-|++|+|||++.+.. ...+ ....|...|..+.|+ -.+|++|+.||+++|||+ .++
T Consensus 267 ptE~~vfaScS~DgsIrIWDiRs~~~-----~~~~---~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~ 338 (440)
T KOG0302|consen 267 PTEDGVFASCSCDGSIRIWDIRSGPK-----KAAV---STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQ 338 (440)
T ss_pred CccCceEEeeecCceEEEEEecCCCc-----ccee---EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCC
Confidence 965 5789999999999999998743 2233 458899999999998 358999999999999999 468
Q ss_pred eeEEEcccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEEEcC
Q 001391 339 QLKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 339 ~~~~~~~h~~~~V~~l~~~~dg-~~l~tg~~Dg~I~iwd~~ 378 (1088)
++..|+.|.. +|+++.|+|.. ..|+++|.|..|.+||+.
T Consensus 339 pVA~fk~Hk~-pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 339 PVATFKYHKA-PITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred cceeEEeccC-CeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 8999999998 89999999854 578889999999999994
No 163
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=2.3e-15 Score=174.19 Aligned_cols=310 Identities=16% Similarity=0.216 Sum_probs=215.5
Q ss_pred CceEEecCCCc-eeeeeEEEEEeccCCCCCCCCEEEEEeC-CeEEEEECCCCeeEEEEee--eCCcceEEEEeccccccc
Q 001391 5 DLSEWRLDVGQ-YLGEISALCFVHLPSHLSSLPFLLAGSG-SQVLLYDLEAGTLIRPFQV--FHGIRLHGISCNFINCTE 80 (1088)
Q Consensus 5 ~i~iWdl~~g~-~~~~V~~v~fs~~pd~~~~~~~laag~d-~~I~vwd~~tg~~~~~~~~--~~~~~V~~i~~s~~~~~~ 80 (1088)
.|..||..... -..+-..+.|+ |- ...++++.| ..|+|||.+.++++..|.. +...+|..+.+--.
T Consensus 1051 ~i~~W~~~~~~~n~~~pk~~~~h--pf----~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe---- 1120 (1387)
T KOG1517|consen 1051 PIGNWDQKFMTGNNQPPKTLKFH--PF----EPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINE---- 1120 (1387)
T ss_pred cccchHHHHHhcCCCCCceeeec--CC----CceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecc----
Confidence 34566633222 12345677888 76 677888775 8999999999999887764 23457888887521
Q ss_pred CCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeee-------ccCCCCcEEEEEEecccCCCCEEEEE
Q 001391 81 GSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQS-------LPRLSHWVFDVCFLKVCNGNRSLAIG 153 (1088)
Q Consensus 81 ~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~-------l~~h~~~I~~v~f~p~~~d~~~lasg 153 (1088)
-|. ..+++++.||.||||+--.... . +.+++.- +.+-.+.=.-++|.. ...+|+++
T Consensus 1121 -~D~---aLlLtas~dGvIRIwk~y~~~~--~--------~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ---~~G~Ll~t 1183 (1387)
T KOG1517|consen 1121 -QDD---ALLLTASSDGVIRIWKDYADKW--K--------KPELVTAWSSLSDQLPGARGTGLVVDWQQ---QSGHLLVT 1183 (1387)
T ss_pred -cch---hheeeeccCceEEEeccccccc--C--------CceeEEeeccccccCccCCCCCeeeehhh---hCCeEEec
Confidence 222 3777778899999998543210 0 1222221 112222223455655 55566677
Q ss_pred EcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCC
Q 001391 154 CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (1088)
Q Consensus 154 s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~ 233 (1088)
|.-..|+|||.....+...+.....+.+.++.. +...|.+|++|..||.|++||.+.
T Consensus 1184 Gd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~--~~~~gn~i~AGfaDGsvRvyD~R~--------------------- 1240 (1387)
T KOG1517|consen 1184 GDVRSIRIWDAHKEQVVADIPYGSSTLVTALSA--DLVHGNIIAAGFADGSVRVYDRRM--------------------- 1240 (1387)
T ss_pred CCeeEEEEEecccceeEeecccCCCccceeecc--cccCCceEEEeecCCceEEeeccc---------------------
Confidence 668899999999888888877666666666543 345689999999999999999981
Q ss_pred CceeEecccccceeeeEEEeCCCCC--EEEEEEcCCCC-EEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcc
Q 001391 234 FKCFKLQDQQHTAVNLFRLVGHEGS--IFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310 (1088)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~gh~~~--V~~v~~sp~g~-~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~ 310 (1088)
......+...+.|... |..+.+-+.|- .|++|+.||.|++||++.... ...+.........+.
T Consensus 1241 ---------a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-----e~~~~iv~~~~yGs~ 1306 (1387)
T KOG1517|consen 1241 ---------APPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-----ETFLTIVAHWEYGSA 1306 (1387)
T ss_pred ---------CCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-----cccceeeeccccCcc
Confidence 1133456677889888 99999998764 599999999999999998421 111110011111234
Q ss_pred eEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEcccCC------CCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 311 VWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIG------RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 311 I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~------~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
.+++..+ ...+++|+. +.|+||++.|+.+..++.+.+ ..+.+++|+|..-+|+.|..|.+|.||....
T Consensus 1307 lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1307 LTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred ceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence 7888887 578899888 999999999888776654321 3688999999999999999999999998743
No 164
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.69 E-value=9.8e-16 Score=162.80 Aligned_cols=240 Identities=14% Similarity=0.183 Sum_probs=167.8
Q ss_pred EEEEeccCC-CCCCCCEEEEEe-CCeEEEEECCC----------CeeEE-----------EEeeeCCcceEEEEeccccc
Q 001391 22 ALCFVHLPS-HLSSLPFLLAGS-GSQVLLYDLEA----------GTLIR-----------PFQVFHGIRLHGISCNFINC 78 (1088)
Q Consensus 22 ~v~fs~~pd-~~~~~~~laag~-d~~I~vwd~~t----------g~~~~-----------~~~~~~~~~V~~i~~s~~~~ 78 (1088)
|+++.+-|. ..+.+.|+|.|+ ++.|.|||+.= |.... .-.+|.. .|..+.|.
T Consensus 178 C~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTd-avl~Ls~n---- 252 (463)
T KOG0270|consen 178 CIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTD-AVLALSWN---- 252 (463)
T ss_pred hhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchH-HHHHHHhc----
Confidence 555542122 335578999999 89999999742 10000 0112333 45566665
Q ss_pred ccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCC
Q 001391 79 TEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN 157 (1088)
Q Consensus 79 ~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg 157 (1088)
..- +.+||+++ |.+|++||+.+ .++..++..|.+.|.+++|+| .....|++|+.|+
T Consensus 253 ---~~~---~nVLaSgsaD~TV~lWD~~~---------------g~p~~s~~~~~k~Vq~l~wh~--~~p~~LLsGs~D~ 309 (463)
T KOG0270|consen 253 ---RNF---RNVLASGSADKTVKLWDVDT---------------GKPKSSITHHGKKVQTLEWHP--YEPSVLLSGSYDG 309 (463)
T ss_pred ---ccc---ceeEEecCCCceEEEEEcCC---------------CCcceehhhcCCceeEEEecC--CCceEEEeccccc
Confidence 222 25666665 99999999996 456777888999999999999 3567999999999
Q ss_pred cEEEEEcCCC---ceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCC
Q 001391 158 SIRVWDISNS---SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF 234 (1088)
Q Consensus 158 ~V~iWd~~~~---~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~ 234 (1088)
+|.+.|.+.. ....++.+....+.|. ......+++++.||+++-+|++
T Consensus 310 ~V~l~D~R~~~~s~~~wk~~g~VEkv~w~------~~se~~f~~~tddG~v~~~D~R----------------------- 360 (463)
T KOG0270|consen 310 TVALKDCRDPSNSGKEWKFDGEVEKVAWD------PHSENSFFVSTDDGTVYYFDIR----------------------- 360 (463)
T ss_pred eEEeeeccCccccCceEEeccceEEEEec------CCCceeEEEecCCceEEeeecC-----------------------
Confidence 9999999842 2223333333333332 2335678889999999999998
Q ss_pred ceeEecccccceeeeEEEeCCCCCEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccC---cc
Q 001391 235 KCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN---AR 310 (1088)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~---~~ 310 (1088)
..++++..++.|.+.|.+|.+++.- .+++|++.|+.|++|++..... . ....|. ++
T Consensus 361 ---------~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~------~-----~v~~~~~~~~r 420 (463)
T KOG0270|consen 361 ---------NPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP------K-----SVKEHSFKLGR 420 (463)
T ss_pred ---------CCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC------c-----ccccccccccc
Confidence 2458899999999999999998865 5688899999999999987533 1 122222 22
Q ss_pred eEEEEEC---CCEEEEEeCCCcEEEEcC-CCc
Q 001391 311 VWDCCLT---DSFIITAGEDCTCRVWGS-DGK 338 (1088)
Q Consensus 311 I~~v~~~---~~~l~sg~~Dg~i~vWd~-~~~ 338 (1088)
..|.++. +..++.|+..+.++|||+ +..
T Consensus 421 l~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 421 LHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred eeecccCCCcceEEEecCccceEEEeecccCh
Confidence 3444444 468999999999999998 443
No 165
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=6.9e-15 Score=161.06 Aligned_cols=237 Identities=13% Similarity=0.116 Sum_probs=160.3
Q ss_pred ceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecC
Q 001391 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (1088)
Q Consensus 123 ~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d 202 (1088)
.+-..+.||++.|.++...| .|.+||+|+.||+|+||.+.++.++.+..-.. .+.+++|.+. ++-.+||++..
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp---~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~--~I~~vaw~P~-~~~~vLAvA~~- 463 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDP---SGEWLASGSDDGTVRIWEIATGRCVRTVQFDS--EIRSVAWNPL-SDLCVLAVAVG- 463 (733)
T ss_pred eeeeeEeccCCeEEEEEecC---CcceeeecCCCCcEEEEEeecceEEEEEeecc--eeEEEEecCC-CCceeEEEEec-
Confidence 34456789999999999999 99999999999999999999999998876433 4555555332 23334444433
Q ss_pred CeEEEEEeccCccccCCCCCCC-ccCCCCCCCCceeEeccccc---ceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC-
Q 001391 203 NEIIVWKVDWEHVAPLLNSPEG-NHAHGSSSDFKCFKLQDQQH---TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD- 277 (1088)
Q Consensus 203 g~I~vwd~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D- 277 (1088)
..+.|-+...+........... .+.......+..+..|.... ...-+.....|...|..|.|+..|.+|++...+
T Consensus 464 ~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~ 543 (733)
T KOG0650|consen 464 ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDS 543 (733)
T ss_pred CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCC
Confidence 3366655443311111000000 01101111334556665431 122245556799999999999999999997654
Q ss_pred --CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC--CEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeE
Q 001391 278 --RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIW 352 (1088)
Q Consensus 278 --g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~--~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~ 352 (1088)
..|.|.++...+. .. .+..-.+.|.++.|++ .+++.++ ...||+||+ ....++.+..... .|.
T Consensus 544 ~~~~VliHQLSK~~s-----Q~-----PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~k-wiS 611 (733)
T KOG0650|consen 544 GNKSVLIHQLSKRKS-----QS-----PFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSK-WIS 611 (733)
T ss_pred CcceEEEEecccccc-----cC-----chhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCe-eee
Confidence 6789999987643 11 3334456688999994 4555554 457999999 5555566555544 699
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 353 RCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 353 ~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
+++.+|.|..|+.|+.|+.++.+|++
T Consensus 612 ~msihp~GDnli~gs~d~k~~WfDld 637 (733)
T KOG0650|consen 612 SMSIHPNGDNLILGSYDKKMCWFDLD 637 (733)
T ss_pred eeeecCCCCeEEEecCCCeeEEEEcc
Confidence 99999999999999999999999984
No 166
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.69 E-value=2.6e-15 Score=150.70 Aligned_cols=278 Identities=21% Similarity=0.297 Sum_probs=195.8
Q ss_pred CEEEEEe-----CCeEEEEECCC--CeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE-C---C----CEEE
Q 001391 36 PFLLAGS-----GSQVLLYDLEA--GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-G---E----KRVK 100 (1088)
Q Consensus 36 ~~laag~-----d~~I~vwd~~t--g~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-g---d----~~v~ 100 (1088)
.-+++|+ +.+|.+.++.. +++......|+...|+.++-+|. +. ++|++. . | -.+.
T Consensus 27 icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~------d~----~ilaT~yn~~s~s~vl~~aa 96 (370)
T KOG1007|consen 27 ICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPF------DQ----RILATVYNDTSDSGVLTGAA 96 (370)
T ss_pred eEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCC------CC----ceEEEEEeccCCCcceeeEE
Confidence 3445554 36777777654 34444433345457999999953 22 555543 2 2 3589
Q ss_pred EEEeccCCCCCCCCCCccccccceeeecc-CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce-EEEeccCC-
Q 001391 101 LFELNFELSPNSQYQPETCVNLSLVQSLP-RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-ILEVHSPE- 177 (1088)
Q Consensus 101 iw~l~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~-~~~~~~~~- 177 (1088)
||.+..+..+ +.++ .++++..+. .+-+.|.|+.|.| ++..|++-. |+.|.+|++..+.. +..+..+.
T Consensus 97 iw~ipe~~~~-S~~~-----tlE~v~~Ldteavg~i~cvew~P---ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s 166 (370)
T KOG1007|consen 97 IWQIPEPLGQ-SNSS-----TLECVASLDTEAVGKINCVEWEP---NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSES 166 (370)
T ss_pred EEecccccCc-cccc-----hhhHhhcCCHHHhCceeeEEEcC---CCCeeEEec-cCceEEEEcccCcchheeeccccc
Confidence 9999854311 2222 367777776 5667999999999 888888765 99999999987765 44444222
Q ss_pred ---ceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEE-Ee
Q 001391 178 ---RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR-LV 253 (1088)
Q Consensus 178 ---~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 253 (1088)
....++-++ ..-.++..+++. .|+++..||++ +...... -.
T Consensus 167 ~e~~~~ftsg~W-spHHdgnqv~tt-~d~tl~~~D~R---------------------------------T~~~~~sI~d 211 (370)
T KOG1007|consen 167 AEMRHSFTSGAW-SPHHDGNQVATT-SDSTLQFWDLR---------------------------------TMKKNNSIED 211 (370)
T ss_pred ccccceeccccc-CCCCccceEEEe-CCCcEEEEEcc---------------------------------chhhhcchhh
Confidence 112233332 223467777664 58999999998 2322222 24
Q ss_pred CCCCCEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCc
Q 001391 254 GHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCT 329 (1088)
Q Consensus 254 gh~~~V~~v~~sp~g~-~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~ 329 (1088)
.|...|..+.|+|+.+ +|+||++||.|||||.+..+ .++. .+.+|.-.||++.|+ +++|++|+.|..
T Consensus 212 AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk-------~pv~--el~~HsHWvW~VRfn~~hdqLiLs~~SDs~ 282 (370)
T KOG1007|consen 212 AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK-------FPVQ--ELPGHSHWVWAVRFNPEHDQLILSGGSDSA 282 (370)
T ss_pred hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC-------cccc--ccCCCceEEEEEEecCccceEEEecCCCce
Confidence 7888999999999876 57899999999999998853 2443 889999999999998 689999999999
Q ss_pred EEEEcCC---C---------------------------ceeEEEcccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEEEcC
Q 001391 330 CRVWGSD---G---------------------------KQLKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 330 i~vWd~~---~---------------------------~~~~~~~~h~~~~V~~l~~~~dg-~~l~tg~~Dg~I~iwd~~ 378 (1088)
+.+|... . ..+.++..|.. .|++++|+.-. -.+++-+.||.+.|=.+.
T Consensus 283 V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED-SVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 283 VNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED-SVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred eEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc-ceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 9999861 0 13446677887 79999997644 467889999999886653
No 167
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.69 E-value=4.5e-15 Score=158.18 Aligned_cols=266 Identities=18% Similarity=0.188 Sum_probs=189.0
Q ss_pred EECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeee
Q 001391 49 YDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQS 127 (1088)
Q Consensus 49 wd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~ 127 (1088)
+|+.+-.....++.+.+ +|++++|+|. .+- .++++++ .|+|-+||+..... ...-+..
T Consensus 171 l~l~~~~~~~v~kv~~~-Rit~l~fHPt-----~~~----~lva~GdK~G~VG~Wn~~~~~~-----------d~d~v~~ 229 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDR-RITSLAFHPT-----ENR----KLVAVGDKGGQVGLWNFGTQEK-----------DKDGVYL 229 (498)
T ss_pred cccccceecceeEeccc-ceEEEEeccc-----Ccc----eEEEEccCCCcEEEEecCCCCC-----------ccCceEE
Confidence 44555555666677666 8999999964 221 3444444 59999999963221 1234556
Q ss_pred ccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce--EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeE
Q 001391 128 LPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI--ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEI 205 (1088)
Q Consensus 128 l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~--~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I 205 (1088)
+..|...|.++.|+|. +-..+++.+.||+|++-|++.... +..+. ......+++.+ +.+...++.|+.-|..
T Consensus 230 f~~hs~~Vs~l~F~P~--n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~-~d~~~fs~~d~---~~e~~~vl~~~~~G~f 303 (498)
T KOG4328|consen 230 FTPHSGPVSGLKFSPA--NTSQIYSSSYDGTIRLQDFEGNISEEVLSLD-TDNIWFSSLDF---SAESRSVLFGDNVGNF 303 (498)
T ss_pred eccCCccccceEecCC--ChhheeeeccCceeeeeeecchhhHHHhhcC-ccceeeeeccc---cCCCccEEEeecccce
Confidence 6789999999999993 445788899999999999987643 23322 23334445554 4556677788888899
Q ss_pred EEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCC-CEEEEEECCCcEEEEE
Q 001391 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWE 284 (1088)
Q Consensus 206 ~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g-~~l~s~s~Dg~v~iWd 284 (1088)
.+||.++ .+.....+.-|+..|.+|+++|.. .+++|+|.|++++|||
T Consensus 304 ~~iD~R~--------------------------------~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD 351 (498)
T KOG4328|consen 304 NVIDLRT--------------------------------DGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWD 351 (498)
T ss_pred EEEEeec--------------------------------CCccchhhhhhhcccceeecCCCCchheeecccCcceeeee
Confidence 9999982 233344556788899999999966 5689999999999999
Q ss_pred cCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCC-----CceeEEEcccCC---CC--eE
Q 001391 285 VRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSD-----GKQLKMIKEHIG---RG--IW 352 (1088)
Q Consensus 285 ~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~-----~~~~~~~~~h~~---~~--V~ 352 (1088)
++.-.... .++ .....|...|.++.|+ +..|++-+.|..|||||.. -.++.++. |.. +. ..
T Consensus 352 ~R~l~~K~----sp~--lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~f 424 (498)
T KOG4328|consen 352 LRQLRGKA----SPF--LSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPF 424 (498)
T ss_pred hhhhcCCC----Ccc--eecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccch
Confidence 98754311 112 2667899999999999 4569999999999999972 12233332 221 12 34
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcCCC
Q 001391 353 RCLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (1088)
Q Consensus 353 ~l~~~~dg~~l~tg~~Dg~I~iwd~~~~ 380 (1088)
...|.|+..+++.|-.-..|-|+|-+++
T Consensus 425 KA~W~P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 425 KAAWDPDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred hheeCCCccEEEEeccCcceeEEcCCCC
Confidence 5679999999999999999999988653
No 168
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.7e-15 Score=155.95 Aligned_cols=285 Identities=14% Similarity=0.175 Sum_probs=196.4
Q ss_pred CEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCC
Q 001391 36 PFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQY 114 (1088)
Q Consensus 36 ~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~ 114 (1088)
..+|++. .|.|++||..+|+.+..|.++.. .+.++.|... ..|+ .++.++.||+|++||++...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~-~~N~vrf~~~---ds~h-----~v~s~ssDG~Vr~wD~Rs~~------ 105 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPA-TTNGVRFISC---DSPH-----GVISCSSDGTVRLWDIRSQA------ 105 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCC-cccceEEecC---CCCC-----eeEEeccCCeEEEEEeecch------
Confidence 4566655 79999999999999999999877 5899999731 1243 67888889999999999654
Q ss_pred CCccccccceeeeccCCC-CcEEEEEEecccCCCCEEEEEE----cCCcEEEEEcCCCce-EEEeccCCceeEEEEeeec
Q 001391 115 QPETCVNLSLVQSLPRLS-HWVFDVCFLKVCNGNRSLAIGC----SDNSIRVWDISNSSI-ILEVHSPERCLLYSMKLWG 188 (1088)
Q Consensus 115 ~~~~~~~~~~~~~l~~h~-~~I~~v~f~p~~~d~~~lasgs----~Dg~V~iWd~~~~~~-~~~~~~~~~~~~~s~~~~~ 188 (1088)
........+|+ ....|++.+- .++.+++|. .|..|.+||++..+. +..+...+..-+.+++|++
T Consensus 106 -------e~a~~~~~~~~~~~f~~ld~nc---k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP 175 (376)
T KOG1188|consen 106 -------ESARISWTQQSGTPFICLDLNC---KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHP 175 (376)
T ss_pred -------hhhheeccCCCCCcceEeeccC---cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecC
Confidence 23344455565 5667777766 777888875 377899999998776 6666655556688899986
Q ss_pred CCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCC
Q 001391 189 DNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG 268 (1088)
Q Consensus 189 ~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g 268 (1088)
. +.++|++|+.||-|.+||.... .....+...-.|...|.++.|..++
T Consensus 176 ~--~pnlLlSGSvDGLvnlfD~~~d------------------------------~EeDaL~~viN~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 176 S--DPNLLLSGSVDGLVNLFDTKKD------------------------------NEEDALLHVINHGSSIHLIGWLSKK 223 (376)
T ss_pred C--CCCeEEeecccceEEeeecCCC------------------------------cchhhHHHhhcccceeeeeeeecCC
Confidence 5 4579999999999999999811 1223333444688899999999877
Q ss_pred -CEEEEEECCCcEEEEEcCCCcccCCCCceeeec---eeeeccCcceEEEEEC-CCEEEEEeC-CCcEEEEcC----C--
Q 001391 269 -SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS---SVLYGHNARVWDCCLT-DSFIITAGE-DCTCRVWGS----D-- 336 (1088)
Q Consensus 269 -~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~---~~~~~h~~~I~~v~~~-~~~l~sg~~-Dg~i~vWd~----~-- 336 (1088)
+.+.+-+...+..+|+++.+..........+.. .....-..-|.+..-. ....+.++. -++..++-+ .
T Consensus 224 ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~ 303 (376)
T KOG1188|consen 224 YKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGS 303 (376)
T ss_pred cceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeeccccc
Confidence 568888899999999999875411000000000 0000000111111111 244555544 455555544 1
Q ss_pred -CceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 337 -GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 337 -~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
.+.+..+.+++..-|.++.|...+..+.|||.||.+++|..
T Consensus 304 ~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 304 LLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 34566677755557889999988999999999999999985
No 169
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.67 E-value=2.8e-14 Score=150.26 Aligned_cols=349 Identities=16% Similarity=0.163 Sum_probs=214.2
Q ss_pred CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCC
Q 001391 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (1088)
Q Consensus 177 ~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 256 (1088)
....++++.+...+. ..+++|+.|..|++|.+...+..+. ..+...+..+..|.
T Consensus 12 ~~~pv~s~dfq~n~~--~~laT~G~D~~iriW~v~r~~~~~~------------------------~~~V~y~s~Ls~H~ 65 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSL--NKLATAGGDKDIRIWKVNRSEPGGG------------------------DMKVEYLSSLSRHT 65 (434)
T ss_pred CCCceEEEEeccCcc--cceecccCccceeeeeeeecCCCCC------------------------ceeEEEeecccCCc
Confidence 444577887765432 3999999999999999883221110 01345667788999
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCccc------CCCC-ceeeeceeeeccCcceEEEEEC--CCEEEEEeCC
Q 001391 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK------DSDS-IEEVGSSVLYGHNARVWDCCLT--DSFIITAGED 327 (1088)
Q Consensus 257 ~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~------~~~~-~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D 327 (1088)
..|+.+.|+|+|..|+||+++|.|.+|....-+.. .... ...+. ..+.+|...|..++|+ +.++++++.|
T Consensus 66 ~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~-k~lr~h~~diydL~Ws~d~~~l~s~s~d 144 (434)
T KOG1009|consen 66 RAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVK-KVLRGHRDDIYDLAWSPDSNFLVSGSVD 144 (434)
T ss_pred ceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEE-EEecccccchhhhhccCCCceeeeeecc
Confidence 99999999999999999999999999988731110 0000 12233 3788999999999998 6899999999
Q ss_pred CcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeC
Q 001391 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIP 406 (1088)
Q Consensus 328 g~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (1088)
.++++||+ .|+.+..+..|.. -+..++|.|-++++++-+.|...+.+++....+...-++. .+......
T Consensus 145 ns~~l~Dv~~G~l~~~~~dh~~-yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~---------~m~~~~~~ 214 (434)
T KOG1009|consen 145 NSVRLWDVHAGQLLAILDDHEH-YVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLD---------IMPAKAFN 214 (434)
T ss_pred ceEEEEEeccceeEeecccccc-ccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeee---------EeeecccC
Confidence 99999999 8999999999998 5999999999999999999997777776432111000000 00000000
Q ss_pred CCcc-ceeecc--CCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeec-CCcceEEEecCCCCCCCcCC
Q 001391 407 NFSE-QIRLTD--SKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVS-EGMPIICMDLLSNEPKYPCG 482 (1088)
Q Consensus 407 ~~~~-~~~~~~--~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~~~~~~~~s~~ 482 (1088)
+..+ ....+. .-....+.++|+|+|.+++.- +|.+- .-......-..+..+. ...++..+- ++
T Consensus 215 ~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtP-ag~~~---~g~~~~~n~tYvfsrk~l~rP~~~lp---------~~ 281 (434)
T KOG1009|consen 215 EREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTP-AGLFK---VGGGVFRNTSYVFSRKDLKRPAARLP---------SP 281 (434)
T ss_pred CCCcceeeeeecCchhhhhhhcccCCCCcEEEcc-cceee---eCCceeeceeEeeccccccCceeecC---------CC
Confidence 0011 111111 112356888999998877754 33221 1110001111111111 122332221 22
Q ss_pred CCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCccccc
Q 001391 483 IDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYE 562 (1088)
Q Consensus 483 ~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~ 562 (1088)
....+++... -..|.+..-...+ . .++.--+.+++-.....+++||.+...
T Consensus 282 ~k~~lavr~~---pVy~elrp~~~~~---------------~-----~~~lpyrlvfaiAt~~svyvydtq~~~------ 332 (434)
T KOG1009|consen 282 KKPALAVRFS---PVYYELRPLSSEK---------------F-----LFVLPYRLVFAIATKNSVYVYDTQTLE------ 332 (434)
T ss_pred CcceEEEEee---eeEEEeccccccc---------------c-----ccccccceEEEEeecceEEEecccccc------
Confidence 3345555432 2233333211000 0 011122333333345679999987432
Q ss_pred CCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcc
Q 001391 563 SSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (1088)
Q Consensus 563 ~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~ 612 (1088)
.+-++.. -|-..||.++|++||.+|+..|.||..-+-.++..
T Consensus 333 -----P~~~v~n---ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 333 -----PLAVVDN---IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred -----ceEEEee---eeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 1222222 57888999999999999999999999888777654
No 170
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=3.3e-16 Score=184.51 Aligned_cols=292 Identities=16% Similarity=0.314 Sum_probs=210.7
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe-----------CCeEEEEECC--CC----eeEEEEeeeCCcceEEEEeccccccc
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDLE--AG----TLIRPFQVFHGIRLHGISCNFINCTE 80 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~-----------d~~I~vwd~~--tg----~~~~~~~~~~~~~V~~i~~s~~~~~~ 80 (1088)
+.-.-++++ |+ + -.++|+|. +.++.||.+. +. +.+..+.. ..+-+.++|.+.
T Consensus 7 ~Rta~~awS--p~--~-~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s--~~rF~kL~W~~~---- 75 (1049)
T KOG0307|consen 7 SRTATFAWS--PA--S-PPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQS--SNRFNKLAWGSY---- 75 (1049)
T ss_pred cccceEEec--CC--C-chhhHHHhhhhccccccccccccceeeecccCccccccccccccc--cccceeeeeccc----
Confidence 344467888 88 2 33777653 2355666543 32 34555554 346799999832
Q ss_pred CCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcE
Q 001391 81 GSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSI 159 (1088)
Q Consensus 81 ~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V 159 (1088)
+...+.+++.+. ||.|.+||...... + .....+.+...|++.|..+.|++. .+++||+|+.||.|
T Consensus 76 ---g~~~~GlIaGG~edG~I~ly~p~~~~~-~--------~~~~~la~~~~h~G~V~gLDfN~~--q~nlLASGa~~geI 141 (1049)
T KOG0307|consen 76 ---GSHSHGLIAGGLEDGNIVLYDPASIIA-N--------ASEEVLATKSKHTGPVLGLDFNPF--QGNLLASGADDGEI 141 (1049)
T ss_pred ---CCCccceeeccccCCceEEecchhhcc-C--------cchHHHhhhcccCCceeeeecccc--CCceeeccCCCCcE
Confidence 221124666665 89999999875210 1 125678889999999999999992 44599999999999
Q ss_pred EEEEcCCCceEEEeccC-CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeE
Q 001391 160 RVWDISNSSIILEVHSP-ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (1088)
Q Consensus 160 ~iWd~~~~~~~~~~~~~-~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 238 (1088)
.|||+...+.-.+.... ....+.++++ +......|++++.+|.+.|||++
T Consensus 142 ~iWDlnn~~tP~~~~~~~~~~eI~~lsW--NrkvqhILAS~s~sg~~~iWDlr--------------------------- 192 (1049)
T KOG0307|consen 142 LIWDLNKPETPFTPGSQAPPSEIKCLSW--NRKVSHILASGSPSGRAVIWDLR--------------------------- 192 (1049)
T ss_pred EEeccCCcCCCCCCCCCCCcccceEecc--chhhhHHhhccCCCCCceecccc---------------------------
Confidence 99999876554443211 1222333333 23345678999999999999999
Q ss_pred ecccccceeeeEEEeCCCC--CEEEEEEcCCC-CEEEEEECC---CcEEEEEcCCCcccCCCCceeeeceeeeccCcceE
Q 001391 239 LQDQQHTAVNLFRLVGHEG--SIFRIEWSSCG-SKLVSVSDD---RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312 (1088)
Q Consensus 239 ~~~~~~~~~~~~~~~gh~~--~V~~v~~sp~g-~~l~s~s~D---g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~ 312 (1088)
..+++..+..|.+ .+..++|+|+. ..++++++| -.|.+||++... ..++ ++.+|...|.
T Consensus 193 ------~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as-------sP~k--~~~~H~~Gil 257 (1049)
T KOG0307|consen 193 ------KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS-------SPLK--ILEGHQRGIL 257 (1049)
T ss_pred ------CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC-------Cchh--hhccccccee
Confidence 4556666665544 47789999987 456777665 368999988742 2343 7789999999
Q ss_pred EEEEC---CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEcCC
Q 001391 313 DCCLT---DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 313 ~v~~~---~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~-~l~tg~~Dg~I~iwd~~~ 379 (1088)
++.|. +.+++|++.|+.|.+|+. +++.+..+..... .++.+.|.|... +++.++.||.|.|+.+.+
T Consensus 258 slsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 258 SLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred eeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc-ceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 99998 479999999999999999 8899999987555 699999998665 889999999999999954
No 171
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.66 E-value=7.4e-15 Score=147.51 Aligned_cols=270 Identities=13% Similarity=0.168 Sum_probs=195.1
Q ss_pred CCCceEEecCCCc----------eeeeeEEEEEeccCCCCCCCCEEEEEeC--------CeEEEEECCCC---------e
Q 001391 3 KKDLSEWRLDVGQ----------YLGEISALCFVHLPSHLSSLPFLLAGSG--------SQVLLYDLEAG---------T 55 (1088)
Q Consensus 3 d~~i~iWdl~~g~----------~~~~V~~v~fs~~pd~~~~~~~laag~d--------~~I~vwd~~tg---------~ 55 (1088)
|+-|.+-++..+. +.|.|..++-+ |. ..++|+++.. -.+-||.+... +
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~--P~---d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE 113 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASS--PF---DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLE 113 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcC--CC---CCceEEEEEeccCCCcceeeEEEEecccccCccccchhh
Confidence 4556666665543 67899999999 86 3567777653 25789998532 3
Q ss_pred eEEEEe-eeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCc
Q 001391 56 LIRPFQ-VFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW 134 (1088)
Q Consensus 56 ~~~~~~-~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 134 (1088)
++..+. .+.+ +|.++.|. |++ ..+++-.|+.|.+|++...... .+ .-+...-.+|...
T Consensus 114 ~v~~Ldteavg-~i~cvew~-------Pns----~klasm~dn~i~l~~l~ess~~-va--------ev~ss~s~e~~~~ 172 (370)
T KOG1007|consen 114 CVASLDTEAVG-KINCVEWE-------PNS----DKLASMDDNNIVLWSLDESSKI-VA--------EVLSSESAEMRHS 172 (370)
T ss_pred HhhcCCHHHhC-ceeeEEEc-------CCC----CeeEEeccCceEEEEcccCcch-he--------eecccccccccce
Confidence 344444 2334 79999999 776 7888888999999999864310 00 0011111236778
Q ss_pred EEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCC-cEEEEEecCCeEEEEEeccC
Q 001391 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEA-LRIASGTIYNEIIVWKVDWE 213 (1088)
Q Consensus 135 I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~-~~l~sg~~dg~I~vwd~~~~ 213 (1088)
.++-+|+|. .++..+++.+ |++++.||+++..+...+....+..+..+.| +|+. ..|++++.||.|++||.+
T Consensus 173 ftsg~WspH-Hdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDf---Npnkq~~lvt~gDdgyvriWD~R-- 245 (370)
T KOG1007|consen 173 FTSGAWSPH-HDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDF---NPNKQHILVTCGDDGYVRIWDTR-- 245 (370)
T ss_pred ecccccCCC-CccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccC---CCCceEEEEEcCCCccEEEEecc--
Confidence 899999983 2777887764 8999999999988888887777777777776 4444 568899999999999998
Q ss_pred ccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCccc-
Q 001391 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWK- 291 (1088)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g-~~l~s~s~Dg~v~iWd~~~~~~~- 291 (1088)
.+..+++.+.+|..+|.+|.|+|.- ++++|++.|..|.+|....-...
T Consensus 246 ------------------------------~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~ 295 (370)
T KOG1007|consen 246 ------------------------------KTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ 295 (370)
T ss_pred ------------------------------CCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccc
Confidence 2567899999999999999999964 67889999999999987543211
Q ss_pred ------------CCCCceeeec------eeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcC
Q 001391 292 ------------DSDSIEEVGS------SVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 292 ------------~~~~~~~i~~------~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~ 335 (1088)
.....+..++ .++..|...|.+++|+ |-.|++-+.||.+.|=.+
T Consensus 296 qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 296 QIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 0000111110 2667899999999998 568899999999988665
No 172
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=5.8e-15 Score=152.08 Aligned_cols=286 Identities=15% Similarity=0.192 Sum_probs=184.8
Q ss_pred cEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcC--CCCEE
Q 001391 194 LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS--CGSKL 271 (1088)
Q Consensus 194 ~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp--~g~~l 271 (1088)
..+|++-..|.|++||.. ++..+..+++|...+..+.|.. ....+
T Consensus 41 ~~vav~lSngsv~lyd~~---------------------------------tg~~l~~fk~~~~~~N~vrf~~~ds~h~v 87 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKG---------------------------------TGQLLEEFKGPPATTNGVRFISCDSPHGV 87 (376)
T ss_pred eeEEEEecCCeEEEEecc---------------------------------chhhhheecCCCCcccceEEecCCCCCee
Confidence 578889999999999998 7888999999999999999987 45779
Q ss_pred EEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccC-cceEEEEEC--CCEEEEEe----CCCcEEEEcC-C-CceeEE
Q 001391 272 VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN-ARVWDCCLT--DSFIITAG----EDCTCRVWGS-D-GKQLKM 342 (1088)
Q Consensus 272 ~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~-~~I~~v~~~--~~~l~sg~----~Dg~i~vWd~-~-~~~~~~ 342 (1088)
.+|+.||+||+||++.... ...+...+++ .+..+++.. ++.+++|. .|..+.+||. . .+++..
T Consensus 88 ~s~ssDG~Vr~wD~Rs~~e--------~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~ 159 (376)
T KOG1188|consen 88 ISCSSDGTVRLWDIRSQAE--------SARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ 159 (376)
T ss_pred EEeccCCeEEEEEeecchh--------hhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh
Confidence 9999999999999998643 2112344444 455666664 56666665 3667999999 3 343555
Q ss_pred E-cccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCC
Q 001391 343 I-KEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSE 420 (1088)
Q Consensus 343 ~-~~h~~~~V~~l~~~~dg-~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (1088)
+ ..|.. -|+++.|+|+. ++|++|+.||-|.++|++.. +.+..+...-.+..
T Consensus 160 ~~eSH~D-DVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d--------------------------~EeDaL~~viN~~s 212 (376)
T KOG1188|consen 160 LNESHND-DVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD--------------------------NEEDALLHVINHGS 212 (376)
T ss_pred hhhhccC-cceeEEecCCCCCeEEeecccceEEeeecCCC--------------------------cchhhHHHhhcccc
Confidence 4 56777 49999999964 69999999999999999642 11111111112334
Q ss_pred ceEEEEeccCC--eEEEEecCCeEEEEEeccCCcceeEEeeeec--C----CcceEEEecCCCCCCCcCCCCCeEEEecC
Q 001391 421 YVRCLHLTSED--TLYIATNHGYLYHTKLCDMDSVNWNKILQVS--E----GMPIICMDLLSNEPKYPCGIDDWVALGDG 492 (1088)
Q Consensus 421 ~V~~l~~s~~~--~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~--~----~~~i~~l~~~~~~~~~s~~~~~~la~g~~ 492 (1088)
.|.++.|..++ ++++.|..+.+..|++.+.....|....... . ..--+.++. ..+.+.+.+++++.
T Consensus 213 SI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~------~~~~~~~~~~l~g~ 286 (376)
T KOG1188|consen 213 SIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE------HSPGDKDTCALAGT 286 (376)
T ss_pred eeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec------ccCCCcceEEEecc
Confidence 68999999988 8899998888887777665443332211000 0 001111111 12345566666655
Q ss_pred -CCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCC
Q 001391 493 -KGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDP 555 (1088)
Q Consensus 493 -dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~ 555 (1088)
.++..++-+..........-.......+..-++.. ++...+.+++||+.||.+.+|..++.
T Consensus 287 ~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i--~~~~~~~~l~TGGEDG~l~~Wk~~da 348 (376)
T KOG1188|consen 287 DSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDI--LFDVKNDVLYTGGEDGLLQAWKVEDA 348 (376)
T ss_pred ccCceeEEEeeecccccccCccccccCCcHHHHHHH--hhhcccceeeccCCCceEEEEecCCc
Confidence 66777776643111111111111222222223332 24456789999999999999996543
No 173
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.65 E-value=6.3e-12 Score=146.82 Aligned_cols=370 Identities=19% Similarity=0.305 Sum_probs=249.6
Q ss_pred eccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc-eEEEeccCCceeEEEEeeecCCCCCc-EEEE-EecCC
Q 001391 127 SLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-IILEVHSPERCLLYSMKLWGDNLEAL-RIAS-GTIYN 203 (1088)
Q Consensus 127 ~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~-~~~~~~~~~~~~~~s~~~~~~s~~~~-~l~s-g~~dg 203 (1088)
....|...|.++.+.+ .+..++.++.|+.+.+|+..... ....+.......+...... .+++. .++. +..|+
T Consensus 60 ~~~~~~~~i~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~ 134 (466)
T COG2319 60 LLRGHEDSITSIAFSP---DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS--SPDGNSILLASSSLDG 134 (466)
T ss_pred eeeeccceEEEEEECC---CCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE--CCCcceEEeccCCCCc
Confidence 4567899999999999 99999999999999999998886 5555554322122223221 23444 4444 44599
Q ss_pred eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccc-eeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC-CCcEE
Q 001391 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT-AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRSAR 281 (1088)
Q Consensus 204 ~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~-Dg~v~ 281 (1088)
.+.+|+.. . ......+..|...|..++|+|++..+++++. |+.++
T Consensus 135 ~~~~~~~~---------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 181 (466)
T COG2319 135 TVKLWDLS---------------------------------TPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIK 181 (466)
T ss_pred cEEEEEec---------------------------------CCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceE
Confidence 99999998 4 5677788999999999999999999888886 99999
Q ss_pred EEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CC-EEEEEeCCCcEEEEcC-CCceeE-EEcccCCCCeEEEEE
Q 001391 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS-FIITAGEDCTCRVWGS-DGKQLK-MIKEHIGRGIWRCLY 356 (1088)
Q Consensus 282 iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~-~l~sg~~Dg~i~vWd~-~~~~~~-~~~~h~~~~V~~l~~ 356 (1088)
+|++... ..+. .+.+|...|.+++|. +. .+++++.|+.+++||. .+..+. .+..|.. .. ...|
T Consensus 182 ~~~~~~~--------~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~ 249 (466)
T COG2319 182 LWDLRTG--------KPLS--TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSF 249 (466)
T ss_pred EEEcCCC--------ceEE--eeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc-ce-eEeE
Confidence 9999873 2332 666799999999998 33 5555699999999988 567777 6888877 33 3379
Q ss_pred cCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCC-eEEE
Q 001391 357 DSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYI 435 (1088)
Q Consensus 357 ~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~-~ll~ 435 (1088)
++++.++++++.|+.+++|+...... .+. ....|...+.++.|.|++ .+++
T Consensus 250 ~~~~~~~~~~~~d~~~~~~~~~~~~~----------------~~~------------~~~~~~~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 250 SPDGSLLASGSSDGTIRLWDLRSSSS----------------LLR------------TLSGHSSSVLSVAFSPDGKLLAS 301 (466)
T ss_pred CCCCCEEEEecCCCcEEEeeecCCCc----------------EEE------------EEecCCccEEEEEECCCCCEEEE
Confidence 99998999999999999999954211 000 012345678899999955 4444
Q ss_pred EecCCeEEEEEeccCCcceeEEeee-ecCCcceEEEecCCCCCCCcCCCCCeEEEe-cCCCCEEEEEEcCCCcCcceeee
Q 001391 436 ATNHGYLYHTKLCDMDSVNWNKILQ-VSEGMPIICMDLLSNEPKYPCGIDDWVALG-DGKGNMTIVRVVGDVHTPQLSFT 513 (1088)
Q Consensus 436 ~t~~g~i~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~s~~~~~~la~g-~~dg~I~iw~~~~~~~~~~~~~~ 513 (1088)
++.++.+..+ +........... ..+...+..+.+ .. +...++.+ ..|+.+.+|++.... . ...
T Consensus 302 ~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~d~~~~~~~~~~~~-~---~~~ 366 (466)
T COG2319 302 GSSDGTVRLW---DLETGKLLSSLTLKGHEGPVSSLSF-SP-------DGSLLVSGGSDDGTIRLWDLRTGK-P---LKT 366 (466)
T ss_pred eeCCCcEEEE---EcCCCceEEEeeecccCCceEEEEE-CC-------CCCEEEEeecCCCcEEeeecCCCc-e---eEE
Confidence 4555555544 333222111111 122234555555 31 12344444 678899999887654 1 001
Q ss_pred eeeeccccceeeeEEEeecCCCeEEEE-ECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCC
Q 001391 514 FTWSAGIERQLLGTYWCKSLGHRFIFT-ADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFED 592 (1088)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~s~dg~~L~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg 592 (1088)
.. ....... ..+++ ....+. +..++.+.+|+...... ...+. .+...+....+++++
T Consensus 367 --~~--~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~-~~~~~~~~~~~~~~~ 424 (466)
T COG2319 367 --LE--GHSNVLS--VSFSP-DGRVVSSGSTDGTVRLWDLSTGSL--------------LRNLD-GHTSRVTSLDFSPDG 424 (466)
T ss_pred --ec--CCceEEE--EEECC-CCCEEEEecCCCceEEEecccCee--------------eeecc-CCCCcEEEEEECCCC
Confidence 01 1110112 23444 333443 78899999999885421 11111 111678899999999
Q ss_pred CEEEEEcCCCcEEEEeCCc
Q 001391 593 EVLFCGDLRGNLVLFPLLR 611 (1088)
Q Consensus 593 ~~LatGs~dg~I~Iw~~~~ 611 (1088)
..++.++.++++.+|+...
T Consensus 425 ~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 425 KSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cEEEEecCCCcEEEEeccC
Confidence 9999999999999999774
No 174
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.64 E-value=6.1e-12 Score=146.90 Aligned_cols=367 Identities=22% Similarity=0.333 Sum_probs=251.8
Q ss_pred CceeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCe-eEEEEeeeCCcceEEEEecccccccCCCccceeeEE
Q 001391 14 GQYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT-LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1088)
Q Consensus 14 g~~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~-~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~l 91 (1088)
..+...|.++.|. +. +..++.+. ++.+.+|+...+. .+..+...+...+..+.+. . +++. ..+
T Consensus 62 ~~~~~~i~~~~~~--~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~---~~~ 126 (466)
T COG2319 62 RGHEDSITSIAFS--PD----GELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-S-----PDGN---SIL 126 (466)
T ss_pred eeccceEEEEEEC--CC----CcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-C-----CCcc---eEE
Confidence 3466789999999 77 77788776 8999999998886 6667766443356677662 2 5551 233
Q ss_pred EE-EC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc-CCcEEEEEcCCCc
Q 001391 92 AL-FG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNSS 168 (1088)
Q Consensus 92 a~-~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~-Dg~V~iWd~~~~~ 168 (1088)
+. .. ++.+.+|++... ......+..|...|.+++|+| ++..+++++. |+.+++|++..+.
T Consensus 127 ~~~~~~d~~~~~~~~~~~--------------~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 189 (466)
T COG2319 127 LASSSLDGTVKLWDLSTP--------------GKLIRTLEGHSESVTSLAFSP---DGKLLASGSSLDGTIKLWDLRTGK 189 (466)
T ss_pred eccCCCCccEEEEEecCC--------------CeEEEEEecCcccEEEEEECC---CCCEEEecCCCCCceEEEEcCCCc
Confidence 33 44 899999999841 356777889999999999999 8888888885 9999999999877
Q ss_pred eEEEeccCCceeEEEEeeecCCCCCc-EEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccccee
Q 001391 169 IILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1088)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~s~~~~-~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 247 (1088)
.+..+..+. ..+..+++. +++. .+++++.|+.|++||.. .+.
T Consensus 190 ~~~~~~~~~-~~v~~~~~~---~~~~~~~~~~~~d~~i~~wd~~---------------------------------~~~ 232 (466)
T COG2319 190 PLSTLAGHT-DPVSSLAFS---PDGGLLIASGSSDGTIRLWDLS---------------------------------TGK 232 (466)
T ss_pred eEEeeccCC-CceEEEEEc---CCcceEEEEecCCCcEEEEECC---------------------------------CCc
Confidence 777776633 345556653 5665 55556999999999876 444
Q ss_pred eeE-EEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC--CEEEEE
Q 001391 248 NLF-RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITA 324 (1088)
Q Consensus 248 ~~~-~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~--~~l~sg 324 (1088)
.+. .+.+|.... -..|+|++.++++++.|+.+++|+...... .+. ...+|...+.++.|.+ ..++++
T Consensus 233 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-------~~~--~~~~~~~~v~~~~~~~~~~~~~~~ 302 (466)
T COG2319 233 LLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS-------LLR--TLSGHSSSVLSVAFSPDGKLLASG 302 (466)
T ss_pred EEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc-------EEE--EEecCCccEEEEEECCCCCEEEEe
Confidence 555 678888875 448999999999999999999999987531 222 3378889999999984 777789
Q ss_pred eCCCcEEEEcC-CCceeEEEc--ccCCCCeEEEEEcCCCCEEEEE-eCCCCEEEEEcCCCCCCcccCCccccccCCCcce
Q 001391 325 GEDCTCRVWGS-DGKQLKMIK--EHIGRGIWRCLYDSLSSLLVTA-GFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEI 400 (1088)
Q Consensus 325 ~~Dg~i~vWd~-~~~~~~~~~--~h~~~~V~~l~~~~dg~~l~tg-~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1088)
+.|+.+++|+. ......... .|.. .+..+.+.+++..++.+ ..|+.+.+|+..... . .
T Consensus 303 ~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~----------------~ 364 (466)
T COG2319 303 SSDGTVRLWDLETGKLLSSLTLKGHEG-PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-P----------------L 364 (466)
T ss_pred eCCCcEEEEEcCCCceEEEeeecccCC-ceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-e----------------e
Confidence 99999999988 444444444 6766 58999994332455555 688999999985421 0 0
Q ss_pred EEeeeCCCccceeeccCCCCceEEEEeccCCeEEEE--ecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCC
Q 001391 401 FSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA--TNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPK 478 (1088)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~--t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 478 (1088)
... ... ..+..+.+.+ ...+.+ ..++.+..++...... ........ ..+.......
T Consensus 365 ~~~------------~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~---- 422 (466)
T COG2319 365 KTL------------EGH-SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSL---LRNLDGHT-SRVTSLDFSP---- 422 (466)
T ss_pred EEe------------cCC-ceEEEEEECC-CCCEEEEecCCCceEEEecccCee---eeeccCCC-CcEEEEEECC----
Confidence 000 000 1155666666 423332 4556666444333221 11111110 3444444433
Q ss_pred CcCCCCCeEEEecCCCCEEEEEEcC
Q 001391 479 YPCGIDDWVALGDGKGNMTIVRVVG 503 (1088)
Q Consensus 479 ~s~~~~~~la~g~~dg~I~iw~~~~ 503 (1088)
.+..++.+..++.+++|+...
T Consensus 423 ----~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 423 ----DGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ----CCcEEEEecCCCcEEEEeccC
Confidence 346788889999999998875
No 175
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.64 E-value=2.7e-14 Score=145.72 Aligned_cols=276 Identities=16% Similarity=0.204 Sum_probs=195.6
Q ss_pred eEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCC-------C-----eeEEEEeeeCCcceEEEEecccccccCCCccc
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA-------G-----TLIRPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t-------g-----~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~ 86 (1088)
..+..|+ || |.-|++-+ |..+++|++.. + +...+++..++..|..-+|-+.--...|+.
T Consensus 52 ~kgckWS--PD----GSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t-- 123 (406)
T KOG2919|consen 52 LKGCKWS--PD----GSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST-- 123 (406)
T ss_pred hccceeC--CC----CceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcc--
Confidence 4477899 99 77777766 89999999842 1 223344555566788777754323345665
Q ss_pred eeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeecc--CCCCc---EEEEEEecccCCCCEEEEEEcCCcEE
Q 001391 87 VTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP--RLSHW---VFDVCFLKVCNGNRSLAIGCSDNSIR 160 (1088)
Q Consensus 87 ~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~--~h~~~---I~~v~f~p~~~d~~~lasgs~Dg~V~ 160 (1088)
.++++ +.+.-|++||.-++. +.+.+. .|.+. -.+++|+| ||.+|..| ..++|+
T Consensus 124 --~l~a~ssr~~PIh~wdaftG~---------------lraSy~~ydh~de~taAhsL~Fs~---DGeqlfaG-ykrcir 182 (406)
T KOG2919|consen 124 --NLFAVSSRDQPIHLWDAFTGK---------------LRASYRAYDHQDEYTAAHSLQFSP---DGEQLFAG-YKRCIR 182 (406)
T ss_pred --ceeeeccccCceeeeeccccc---------------cccchhhhhhHHhhhhheeEEecC---CCCeEeec-ccceEE
Confidence 45555 458999999988643 333332 34443 47899999 99999866 578999
Q ss_pred EEEc-CCCce---EEEec---cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCC
Q 001391 161 VWDI-SNSSI---ILEVH---SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (1088)
Q Consensus 161 iWd~-~~~~~---~~~~~---~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~ 233 (1088)
++|+ +.|.. ..++. .....++...++. ..+..+++.|+.-..+-|+...
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~s--P~~~~~~a~gsY~q~~giy~~~---------------------- 238 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFS--PMDSKTLAVGSYGQRVGIYNDD---------------------- 238 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceeeeeecc--CCCCcceeeecccceeeeEecC----------------------
Confidence 9999 44432 11111 1223334444442 2234588999888888888776
Q ss_pred CceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCcccCCCCceeeeceeeeccCc-ce
Q 001391 234 FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA-RV 311 (1088)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~-Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~-~I 311 (1088)
...+++.+.||.+.|+.+.|.++|..|.+|+. |-.|-.||++..+. .+ +.+..|.. .=
T Consensus 239 -----------~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~-------pv--~~L~rhv~~TN 298 (406)
T KOG2919|consen 239 -----------GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD-------PV--YALERHVGDTN 298 (406)
T ss_pred -----------CCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc-------hh--hhhhhhccCcc
Confidence 67888899999999999999999999999876 67899999987532 22 25555544 33
Q ss_pred EEEEEC----CCEEEEEeCCCcEEEEcC-C-CceeEEEcccCCCCeEEEEEcCCCCEEEEEeCC
Q 001391 312 WDCCLT----DSFIITAGEDCTCRVWGS-D-GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (1088)
Q Consensus 312 ~~v~~~----~~~l~sg~~Dg~i~vWd~-~-~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~D 369 (1088)
..+.|. ++.|++|+.||.|++||+ . |.....+..|.. .+..++++|--.+++|++..
T Consensus 299 QRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd-~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 299 QRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD-TVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc-cccceecCcccceeeeccCc
Confidence 345554 789999999999999999 3 677777877877 79999999998888887754
No 176
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.64 E-value=5.6e-14 Score=143.45 Aligned_cols=259 Identities=17% Similarity=0.257 Sum_probs=179.4
Q ss_pred eEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeecc-CCCCcEEEEEEec----
Q 001391 68 LHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP-RLSHWVFDVCFLK---- 142 (1088)
Q Consensus 68 V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~I~~v~f~p---- 142 (1088)
.++..|| |||. -+|+.+.|+.+++|++..+.-.... +.....+....++ .....|.+.+|-+
T Consensus 52 ~kgckWS-------PDGS---ciL~~sedn~l~~~nlP~dlys~~~---~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s 118 (406)
T KOG2919|consen 52 LKGCKWS-------PDGS---CILSLSEDNCLNCWNLPFDLYSKKA---DGPLNFSKHLSYRYQEGETVYDYCWYSRMKS 118 (406)
T ss_pred hccceeC-------CCCc---eEEeecccCeeeEEecChhhcccCC---CCccccccceeEEeccCCEEEEEEeeecccc
Confidence 5667777 8984 6777778999999999854311110 0011112222221 1235677777742
Q ss_pred ccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccC----CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEec-cCcccc
Q 001391 143 VCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP----ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD-WEHVAP 217 (1088)
Q Consensus 143 ~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~----~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~-~~~~~~ 217 (1088)
..++..++|+.+.|.-|++||.-+|+....+..- +-....++.| ++||..|++|. ...|++||.. .++.-+
T Consensus 119 ~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~F---s~DGeqlfaGy-krcirvFdt~RpGr~c~ 194 (406)
T KOG2919|consen 119 DQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQF---SPDGEQLFAGY-KRCIRVFDTSRPGRDCP 194 (406)
T ss_pred CCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEe---cCCCCeEeecc-cceEEEeeccCCCCCCc
Confidence 1125678999999999999999999887766521 1223445555 89999999874 6789999984 111000
Q ss_pred CCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCcccCCCCc
Q 001391 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSI 296 (1088)
Q Consensus 218 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~ 296 (1088)
. .....+.-.+..+-|.+++|+|.. +.++.++.-+++-|++-...
T Consensus 195 v--------------------------y~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-------- 240 (406)
T KOG2919|consen 195 V--------------------------YTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-------- 240 (406)
T ss_pred c--------------------------hhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC--------
Confidence 0 000011122457789999999955 58899999999999887764
Q ss_pred eeeeceeeeccCcceEEEEEC--CCEEEEEeC-CCcEEEEcC--CCceeEEEcccCCCCeEEEEE--cCCCCEEEEEeCC
Q 001391 297 EEVGSSVLYGHNARVWDCCLT--DSFIITAGE-DCTCRVWGS--DGKQLKMIKEHIGRGIWRCLY--DSLSSLLVTAGFD 369 (1088)
Q Consensus 297 ~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~-Dg~i~vWd~--~~~~~~~~~~h~~~~V~~l~~--~~dg~~l~tg~~D 369 (1088)
.++. .+.+|.+.|+.++|. ++.|++|+. |-.|..||+ ...++..+..|.+..=..|.| .|++++|++|+.|
T Consensus 241 ~pl~--llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~td 318 (406)
T KOG2919|consen 241 RPLQ--LLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTD 318 (406)
T ss_pred Ccee--eecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCC
Confidence 3343 778999999999998 788888875 678999999 567888888887643345554 6889999999999
Q ss_pred CCEEEEEcCC
Q 001391 370 SAIKVHQFQA 379 (1088)
Q Consensus 370 g~I~iwd~~~ 379 (1088)
|.|++||+++
T Consensus 319 G~V~vwdlk~ 328 (406)
T KOG2919|consen 319 GSVRVWDLKD 328 (406)
T ss_pred ccEEEEecCC
Confidence 9999999964
No 177
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.62 E-value=2.2e-13 Score=137.30 Aligned_cols=258 Identities=16% Similarity=0.214 Sum_probs=182.3
Q ss_pred CeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC-----CCEEEEEEeccCCCCCCCCCCccccccceeeec
Q 001391 54 GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-----EKRVKLFELNFELSPNSQYQPETCVNLSLVQSL 128 (1088)
Q Consensus 54 g~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-----d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l 128 (1088)
++.+.++..+ ..++++.||-. ++.+ .+||.+. .+.|.|..+.... .+.+...
T Consensus 35 ~~eiy~Y~ap--~~lya~~Ws~~-----~~~~---~rla~gS~~Ee~~Nkvqiv~ld~~s-------------~e~~~~a 91 (364)
T KOG0290|consen 35 RKEIYTYNAP--WPLYAMNWSVR-----PDKK---FRLAVGSFIEEYNNKVQIVQLDEDS-------------GELVEDA 91 (364)
T ss_pred cceEEEecCC--CceeeeccccC-----CCcc---eeEEEeeeccccCCeeEEEEEccCC-------------CceeccC
Confidence 4556666653 35899999843 5553 7777765 4788888887433 1222111
Q ss_pred -cCCCCcEEEEEEecccCCC-----CEEEEEEcCCcEEEEEcCCCceEEE----ec----cCCceeEEEEeeecCCCCCc
Q 001391 129 -PRLSHWVFDVCFLKVCNGN-----RSLAIGCSDNSIRVWDISNSSIILE----VH----SPERCLLYSMKLWGDNLEAL 194 (1088)
Q Consensus 129 -~~h~~~I~~v~f~p~~~d~-----~~lasgs~Dg~V~iWd~~~~~~~~~----~~----~~~~~~~~s~~~~~~s~~~~ 194 (1088)
..|.-+++.+-|.| +. ++|||.+ ..+|+|.+...+.... +. ......+.|..+ +..+..
T Consensus 92 ~fd~~YP~tK~~wiP---d~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDW--ne~dp~ 164 (364)
T KOG0290|consen 92 NFDHPYPVTKLMWIP---DSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDW--NEVDPN 164 (364)
T ss_pred CCCCCCCccceEecC---CccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCccccccc--ccCCcc
Confidence 36888999999999 44 3677764 5799999974221111 11 122233444443 456678
Q ss_pred EEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCC-CEEEE
Q 001391 195 RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVS 273 (1088)
Q Consensus 195 ~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g-~~l~s 273 (1088)
+|.+.+.|-+..|||++++. .+..-..+..|...|+.|+|..++ +.++|
T Consensus 165 ~igtSSiDTTCTiWdie~~~------------------------------~~~vkTQLIAHDKEV~DIaf~~~s~~~FAS 214 (364)
T KOG0290|consen 165 LIGTSSIDTTCTIWDIETGV------------------------------SGTVKTQLIAHDKEVYDIAFLKGSRDVFAS 214 (364)
T ss_pred eeEeecccCeEEEEEEeecc------------------------------ccceeeEEEecCcceeEEEeccCccceEEE
Confidence 99999999999999998210 122344567899999999999866 57899
Q ss_pred EECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCC-CcEEEEcC--CCceeEEEcccC
Q 001391 274 VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGED-CTCRVWGS--DGKQLKMIKEHI 347 (1088)
Q Consensus 274 ~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~D-g~i~vWd~--~~~~~~~~~~h~ 347 (1088)
++.||+||++|++.... ...+ +.-.....+...++|+ ++++++-..| ..|.+-|+ ...++..+++|.
T Consensus 215 vgaDGSvRmFDLR~leH-----STII--YE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~ 287 (364)
T KOG0290|consen 215 VGADGSVRMFDLRSLEH-----STII--YEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQ 287 (364)
T ss_pred ecCCCcEEEEEeccccc-----ceEE--ecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCc
Confidence 99999999999998643 1222 1112224567788887 5788887776 46888998 577889999999
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCCEEEEEcCC
Q 001391 348 GRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 348 ~~~V~~l~~~~dg-~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+ .|..++|.|.. ..|.|+|.|..+.+||+..
T Consensus 288 a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 288 A-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred c-cccceEecCCCCceeeecCCcceEEEEeccc
Confidence 9 79999999965 5899999999999999964
No 178
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=6.3e-14 Score=145.71 Aligned_cols=285 Identities=13% Similarity=0.147 Sum_probs=204.8
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECC------CCeeEEEEeeeCCcceEEEEecccccccCCCcccee
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLE------AGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVT 88 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~------tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~ 88 (1088)
|.|.|.++.|| .+ +++|++|. |..++||++. +.+.+.....|+...|++++|. ...
T Consensus 55 H~GCiNAlqFS--~N----~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~-------~~N---- 117 (609)
T KOG4227|consen 55 HTGCINALQFS--HN----DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFD-------LEN---- 117 (609)
T ss_pred hccccceeeec--cC----CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEc-------cCC----
Confidence 78999999999 77 89999998 5899999985 3466666666775679999997 332
Q ss_pred eEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC
Q 001391 89 FEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (1088)
Q Consensus 89 ~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~ 167 (1088)
..+.+++ +++|.+.|+++.. .-.+..-....+.|+.+..+| ..+.+++.+.++.|.+||....
T Consensus 118 ~~~~SG~~~~~VI~HDiEt~q-------------si~V~~~~~~~~~VY~m~~~P---~DN~~~~~t~~~~V~~~D~Rd~ 181 (609)
T KOG4227|consen 118 RFLYSGERWGTVIKHDIETKQ-------------SIYVANENNNRGDVYHMDQHP---TDNTLIVVTRAKLVSFIDNRDR 181 (609)
T ss_pred eeEecCCCcceeEeeecccce-------------eeeeecccCcccceeecccCC---CCceEEEEecCceEEEEeccCC
Confidence 3444444 7999999998643 111222222335899999999 7889999999999999999876
Q ss_pred ceEEEec--cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccc
Q 001391 168 SIILEVH--SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (1088)
Q Consensus 168 ~~~~~~~--~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 245 (1088)
..-..+. .......+++.|++.. ..+|++.+..+.+-+||.+- .
T Consensus 182 ~~~~~~~~~AN~~~~F~t~~F~P~~--P~Li~~~~~~~G~~~~D~R~--------------------------------~ 227 (609)
T KOG4227|consen 182 QNPISLVLPANSGKNFYTAEFHPET--PALILVNSETGGPNVFDRRM--------------------------------Q 227 (609)
T ss_pred CCCCceeeecCCCccceeeeecCCC--ceeEEeccccCCCCceeecc--------------------------------c
Confidence 5322221 2234456777776543 46788888889999999871 1
Q ss_pred eeeeEE------EeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeecc-------CcceE
Q 001391 246 AVNLFR------LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH-------NARVW 312 (1088)
Q Consensus 246 ~~~~~~------~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h-------~~~I~ 312 (1088)
..++.. +......-.++.|+|.|..+++--.-..-.+||+...++ -.+ ...| ...+.
T Consensus 228 ~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~------~V~----k~D~N~~GY~N~~T~K 297 (609)
T KOG4227|consen 228 ARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRC------FVL----KSDHNPNGYCNIKTIK 297 (609)
T ss_pred cchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccc------eeE----eccCCCCcceeeeeee
Confidence 111111 111122235788999999998877766677889887544 111 1222 23577
Q ss_pred EEEEC-CCEEEEEeCCCcEEEEcCC------C------------------ceeEEEcccCCCCeEEEEEcCCCCEEEEEe
Q 001391 313 DCCLT-DSFIITAGEDCTCRVWGSD------G------------------KQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367 (1088)
Q Consensus 313 ~v~~~-~~~l~sg~~Dg~i~vWd~~------~------------------~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~ 367 (1088)
+++|. +..+++|+.+-.|.+|.+. | +.+..+++|.. -+..+.|+|...+|++.|
T Consensus 298 S~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRS-v~NQVRF~~H~~~l~SSG 376 (609)
T KOG4227|consen 298 SMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRS-VPNQVRFSQHNNLLVSSG 376 (609)
T ss_pred eeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccc-cccceeecCCcceEeccc
Confidence 78887 5669999999999999981 1 23567889988 688999999999999999
Q ss_pred CCCCEEEEEcC
Q 001391 368 FDSAIKVHQFQ 378 (1088)
Q Consensus 368 ~Dg~I~iwd~~ 378 (1088)
-...+++|...
T Consensus 377 VE~~~KlWS~~ 387 (609)
T KOG4227|consen 377 VENSFKLWSDH 387 (609)
T ss_pred hhhheeccccc
Confidence 99999999863
No 179
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.59 E-value=1.6e-13 Score=143.70 Aligned_cols=219 Identities=18% Similarity=0.257 Sum_probs=162.2
Q ss_pred EeeeCCcceEEEEecccccccCCCccceeeEEEE---ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEE
Q 001391 60 FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL---FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVF 136 (1088)
Q Consensus 60 ~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~---~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~ 136 (1088)
-+..+..+|..+.|...+|...|- ++.+. +|+|..-+.-+..-.. .-+..-.+.||++.|.
T Consensus 22 e~CYddIrVs~~tWDS~fcavNPk-----fiAvi~easgGgaf~ViPl~k~Gr-----------~d~~~P~v~GHt~~vL 85 (472)
T KOG0303|consen 22 DQCYDDIRVSRVTWDSSFCAVNPK-----FVAVIIEASGGGAFLVIPLVKTGR-----------MDASYPLVCGHTAPVL 85 (472)
T ss_pred hhhhcceeeeeeeccccccccCCc-----eEEEEEecCCCcceeecccccccc-----------cCCCCCCccCcccccc
Confidence 334556678888887666665553 33333 3455666666553210 0122234569999999
Q ss_pred EEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccc
Q 001391 137 DVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVA 216 (1088)
Q Consensus 137 ~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~ 216 (1088)
+++|+|. +...||+||.|.+|.||++..+.....
T Consensus 86 Di~w~Pf--nD~vIASgSeD~~v~vW~IPe~~l~~~-------------------------------------------- 119 (472)
T KOG0303|consen 86 DIDWCPF--NDCVIASGSEDTKVMVWQIPENGLTRD-------------------------------------------- 119 (472)
T ss_pred ccccCcc--CCceeecCCCCceEEEEECCCcccccC--------------------------------------------
Confidence 9999994 667899999999999999844321111
Q ss_pred cCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCcccCCCC
Q 001391 217 PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDS 295 (1088)
Q Consensus 217 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g-~~l~s~s~Dg~v~iWd~~~~~~~~~~~ 295 (1088)
..+++..+.||...|.-|+|+|.. ..|+|++.|.+|.+||+.++..
T Consensus 120 ----------------------------ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea----- 166 (472)
T KOG0303|consen 120 ----------------------------LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA----- 166 (472)
T ss_pred ----------------------------cccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCce-----
Confidence 224577788999999999999965 5789999999999999999743
Q ss_pred ceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEe---CC
Q 001391 296 IEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG---FD 369 (1088)
Q Consensus 296 ~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~---~D 369 (1088)
.+ ++ .|...|+++.|+ |.++++.+.|..|||||. +++.+..-.+|.+..-....|..++.++.||- .+
T Consensus 167 --li---~l-~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~se 240 (472)
T KOG0303|consen 167 --LI---TL-DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSE 240 (472)
T ss_pred --ee---ec-CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccc
Confidence 22 33 399999999998 899999999999999999 88888888888875456677888888444443 47
Q ss_pred CCEEEEEcCC
Q 001391 370 SAIKVHQFQA 379 (1088)
Q Consensus 370 g~I~iwd~~~ 379 (1088)
..+.+||...
T Consensus 241 Rq~aLwdp~n 250 (472)
T KOG0303|consen 241 RQIALWDPNN 250 (472)
T ss_pred cceeccCccc
Confidence 8899999853
No 180
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.59 E-value=2.3e-14 Score=142.52 Aligned_cols=295 Identities=13% Similarity=0.147 Sum_probs=190.3
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.+.|+++.|- .+ .+|.+|. .|.|++|++++.+.+..++.+.+..|..++.. |++ .+..-+
T Consensus 13 ~~~~v~s~~fq--a~-----~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~-------p~d----~l~tqg 74 (323)
T KOG0322|consen 13 HSSSVTSVLFQ--AN-----ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSI-------PND----SLDTQG 74 (323)
T ss_pred ccchheehhhc--cc-----hhhhcccccceEEEEEeecCccchhhhhhccceeeceeec-------CCc----chhhcC
Confidence 45889999998 55 4588888 59999999999998888887787789999988 543 455556
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEeccc--CCC----CEEEEEEc--CCcEEEEEcCC
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC--NGN----RSLAIGCS--DNSIRVWDISN 166 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~--~d~----~~lasgs~--Dg~V~iWd~~~ 166 (1088)
.|..+.+|++.... ... -|+=.++++.|.+.+ ..+ ++++.=+. |- +.+-|...
T Consensus 75 Rd~~L~lw~ia~s~-------------~i~-----i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde-~h~~D~g~ 135 (323)
T KOG0322|consen 75 RDPLLILWTIAYSA-------------FIS-----IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE-THKQDGGD 135 (323)
T ss_pred CCceEEEEEccCcc-------------eEE-----EeeeeccccccccceeccCCCcchhheecCCcccch-hhhhccCc
Confidence 69999999998532 111 222233444443311 011 11221111 11 22222222
Q ss_pred CceEEEeccCCc---eeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccc
Q 001391 167 SSIILEVHSPER---CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (1088)
Q Consensus 167 ~~~~~~~~~~~~---~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 243 (1088)
...+.....++. ....+...-.......++++|..+|.+.+||+.++... +.+ +
T Consensus 136 ~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~--------------------~~~---~ 192 (323)
T KOG0322|consen 136 TTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKI--------------------IQL---P 192 (323)
T ss_pred cceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCcee--------------------ecc---c
Confidence 222222221111 11111111001123346788999999999999832111 110 1
Q ss_pred cceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEE
Q 001391 244 HTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFI 321 (1088)
Q Consensus 244 ~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l 321 (1088)
...+.......|+.+|.++.|.+.-..=++++.+..+..|+++.... .-.+.. ...-..-.|..+.+. +..+
T Consensus 193 ~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g-----slq~~~-e~~lknpGv~gvrIRpD~KIl 266 (323)
T KOG0322|consen 193 QSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG-----SLQIRK-EITLKNPGVSGVRIRPDGKIL 266 (323)
T ss_pred cccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC-----cccccc-eEEecCCCccceEEccCCcEE
Confidence 12234445567999999999998777778999999999999876421 011110 122222345555555 7899
Q ss_pred EEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 322 ITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 322 ~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
+|++-|+.||||.. +.+++..++.|.+ +|.+++|+|+..++|.++.|++|.+|++
T Consensus 267 ATAGWD~RiRVyswrtl~pLAVLkyHsa-gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 267 ATAGWDHRIRVYSWRTLNPLAVLKYHSA-GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eecccCCcEEEEEeccCCchhhhhhhhc-ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999 8999999999998 7999999999999999999999999986
No 181
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.58 E-value=8e-14 Score=140.40 Aligned_cols=245 Identities=17% Similarity=0.237 Sum_probs=167.6
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCC--CeeE--EEEe----eeCCcceEEEEecccccccCCCccce
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEA--GTLI--RPFQ----VFHGIRLHGISCNFINCTEGSVSTRV 87 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~t--g~~~--~~~~----~~~~~~V~~i~~s~~~~~~~~d~~~~ 87 (1088)
|..|++.+.|. |+..+...-|++.++..+|+|.+.. ++.. ..+. .+...++.+..|.. -|.
T Consensus 95 ~~YP~tK~~wi--Pd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne------~dp--- 163 (364)
T KOG0290|consen 95 HPYPVTKLMWI--PDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNE------VDP--- 163 (364)
T ss_pred CCCCccceEec--CCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCccccccccc------CCc---
Confidence 67899999999 9833333455666667899999873 2211 1111 12234677777763 333
Q ss_pred eeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCC-CEEEEEEcCCcEEEEEcC
Q 001391 88 TFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIRVWDIS 165 (1088)
Q Consensus 88 ~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~-~~lasgs~Dg~V~iWd~~ 165 (1088)
.++.++ -|-+..|||++.+. ....-..|-.|...|++++|.. ++ +.+|+.|.||.||++|++
T Consensus 164 -~~igtSSiDTTCTiWdie~~~------------~~~vkTQLIAHDKEV~DIaf~~---~s~~~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 164 -NLIGTSSIDTTCTIWDIETGV------------SGTVKTQLIAHDKEVYDIAFLK---GSRDVFASVGADGSVRMFDLR 227 (364)
T ss_pred -ceeEeecccCeEEEEEEeecc------------ccceeeEEEecCcceeEEEecc---CccceEEEecCCCcEEEEEec
Confidence 455554 49999999999742 1334456678999999999997 54 589999999999999998
Q ss_pred CCceEEEe-ccCC-ceeEEEEeeecCCCCCcEEEEEec-CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccc
Q 001391 166 NSSIILEV-HSPE-RCLLYSMKLWGDNLEALRIASGTI-YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (1088)
Q Consensus 166 ~~~~~~~~-~~~~-~~~~~s~~~~~~s~~~~~l~sg~~-dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 242 (1088)
..+....+ +.+. ...+. ++.+...|-+++|+-.. ...|.|-|++
T Consensus 228 ~leHSTIIYE~p~~~~pLl--RLswnkqDpnymATf~~dS~~V~iLDiR------------------------------- 274 (364)
T KOG0290|consen 228 SLEHSTIIYEDPSPSTPLL--RLSWNKQDPNYMATFAMDSNKVVILDIR------------------------------- 274 (364)
T ss_pred ccccceEEecCCCCCCcce--eeccCcCCchHHhhhhcCCceEEEEEec-------------------------------
Confidence 77654333 2333 22232 33334455667777544 4678999998
Q ss_pred ccceeeeEEEeCCCCCEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---C
Q 001391 243 QHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---D 318 (1088)
Q Consensus 243 ~~~~~~~~~~~gh~~~V~~v~~sp~g-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~ 318 (1088)
....++.++++|.+.|++|+|.|.. ..++|+++|..+-+||+..... .....+...+.-.+.|..+.|+ +
T Consensus 275 -~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~-----~~~~dPilay~a~~EVNqi~Ws~~~~ 348 (364)
T KOG0290|consen 275 -VPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR-----ENGEDPILAYTAGGEVNQIQWSSSQP 348 (364)
T ss_pred -CCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc-----cCCCCchhhhhccceeeeeeecccCC
Confidence 1567889999999999999999965 6899999999999999987422 0111111333356778999997 6
Q ss_pred CEEEEEeC
Q 001391 319 SFIITAGE 326 (1088)
Q Consensus 319 ~~l~sg~~ 326 (1088)
..|+.+..
T Consensus 349 Dwiai~~~ 356 (364)
T KOG0290|consen 349 DWIAICFG 356 (364)
T ss_pred CEEEEEec
Confidence 67776653
No 182
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=1.6e-13 Score=148.82 Aligned_cols=244 Identities=13% Similarity=0.145 Sum_probs=155.9
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEeC-CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGSG-SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~d-~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.|.|.|++|+ .+ |.+|++|+| -.+.|||...-++++.+...|...|+++.|-|. .+. +.++.++
T Consensus 49 H~GCVN~LeWn--~d----G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~-----tnn---riv~sgA 114 (758)
T KOG1310|consen 49 HTGCVNCLEWN--AD----GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPY-----TNN---RIVLSGA 114 (758)
T ss_pred ccceecceeec--CC----CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeecc-----CCC---eEEEecc
Confidence 78999999999 88 999999995 889999999889999888666667999999864 232 2445556
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCC-CEEEEEEcCCcEEEEEcCCCceE---
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNSSII--- 170 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~-~~lasgs~Dg~V~iWd~~~~~~~--- 170 (1088)
||+.|+|+|+.....-+.. .-..+..+.+..|.+.|..++..| ++ ..+.+++.||+|+-+|++....-
T Consensus 115 gDk~i~lfdl~~~~~~~~d-----~~~~~~~~~~~cht~rVKria~~p---~~PhtfwsasEDGtirQyDiREph~c~p~ 186 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMD-----HGMEETTRCWSCHTDRVKRIATAP---NGPHTFWSASEDGTIRQYDIREPHVCNPD 186 (758)
T ss_pred CcceEEEEecccccccccc-----cCccchhhhhhhhhhhhhheecCC---CCCceEEEecCCcceeeecccCCccCCcc
Confidence 7999999999842210110 001345566778999999999999 77 68999999999999999763211
Q ss_pred ----EEec--cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCC--CC-CCccCCCCCCCCceeEecc
Q 001391 171 ----LEVH--SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLN--SP-EGNHAHGSSSDFKCFKLQD 241 (1088)
Q Consensus 171 ----~~~~--~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~--~~-~~~s~~~~~~~~~~~~~~~ 241 (1088)
..+. .+..-.++++.+. ..+..+|+.|+.|-..++||.+. ..+... +. ..+. ..+.++++.+.
T Consensus 187 ~~~~~~l~ny~~~lielk~ltis--p~rp~~laVGgsdpfarLYD~Rr--~lks~~s~~~~~~~p----p~~~~cv~yf~ 258 (758)
T KOG1310|consen 187 EDCPSILVNYNPQLIELKCLTIS--PSRPYYLAVGGSDPFARLYDRRR--VLKSFRSDGTMNTCP----PKDCRCVRYFS 258 (758)
T ss_pred ccccHHHHHhchhhheeeeeeec--CCCCceEEecCCCchhhhhhhhh--hccCCCCCccccCCC----Ccccchhheec
Confidence 0010 1111223444442 23457899999999999999651 111100 11 1111 11333444443
Q ss_pred cccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 001391 242 QQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (1088)
Q Consensus 242 ~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~ 289 (1088)
..........+..--..++-++|+|+|.-|+..-..-.|+++|+..++
T Consensus 259 p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 259 PGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred CccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence 221100000000011225668899999776665555589999987654
No 183
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.57 E-value=6.3e-15 Score=166.71 Aligned_cols=268 Identities=16% Similarity=0.212 Sum_probs=198.2
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEeC-CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGSG-SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL- 93 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~d-~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~- 93 (1088)
|...|.|+.|. .. ++++++|+| ..++||...++.+++.+.+|.+ .|..++.+ .+. .++++
T Consensus 189 H~naVyca~fD--rt----g~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~-ditdlavs-------~~n----~~iaaa 250 (1113)
T KOG0644|consen 189 HRNAVYCAIFD--RT----GRYIITGSDDRLVKIWSMETARCLASCRGHSG-DITDLAVS-------SNN----TMIAAA 250 (1113)
T ss_pred hhhheeeeeec--cc----cceEeecCccceeeeeeccchhhhccCCCCcc-ccchhccc-------hhh----hhhhhc
Confidence 56779999999 66 999999995 9999999999999999999888 79999998 442 44444
Q ss_pred ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEe
Q 001391 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1088)
Q Consensus 94 ~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~ 173 (1088)
+-|..|++|.+.. ..++..+.||++.|++++|+| .++.+.||++++||..- ......
T Consensus 251 S~D~vIrvWrl~~---------------~~pvsvLrghtgavtaiafsP-------~~sss~dgt~~~wd~r~-~~~~y~ 307 (1113)
T KOG0644|consen 251 SNDKVIRVWRLPD---------------GAPVSVLRGHTGAVTAIAFSP-------RASSSDDGTCRIWDARL-EPRIYV 307 (1113)
T ss_pred ccCceEEEEecCC---------------CchHHHHhccccceeeeccCc-------cccCCCCCceEeccccc-cccccC
Confidence 4489999999985 567888999999999999999 44778999999999872 111111
Q ss_pred ----ccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeee
Q 001391 174 ----HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (1088)
Q Consensus 174 ----~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 249 (1088)
...++....+..+ ..++..+++|+.|++-..|....
T Consensus 308 prp~~~~~~~~~~s~~~---~~~~~~f~Tgs~d~ea~n~e~~~------------------------------------- 347 (1113)
T KOG0644|consen 308 PRPLKFTEKDLVDSILF---ENNGDRFLTGSRDGEARNHEFEQ------------------------------------- 347 (1113)
T ss_pred CCCCCcccccceeeeec---cccccccccccCCcccccchhhH-------------------------------------
Confidence 1112233333333 34567788999999888887650
Q ss_pred EEEeCCCCCEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEe
Q 001391 250 FRLVGHEGSIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAG 325 (1088)
Q Consensus 250 ~~~~gh~~~V~~v~~sp~-g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~ 325 (1088)
+..|...+.-+.++.+ ..+.+++-.+-.+.+|++.++.. .. .+.+|...+..+.++ +....+++
T Consensus 348 --l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l--------~H--~l~ghsd~~yvLd~Hpfn~ri~msag 415 (1113)
T KOG0644|consen 348 --LAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL--------LH--NLMGHSDEVYVLDVHPFNPRIAMSAG 415 (1113)
T ss_pred --hhhhccceEEEeccccccccceeeeeeeEeeeeecccchh--------hh--hhcccccceeeeeecCCCcHhhhhcc
Confidence 0111111111222222 24567777788899999998633 32 778899999999988 45678999
Q ss_pred CCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 326 EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 326 ~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
.||...|||+ .|.+++.....++ .+...+|++||..++....-|.+.|...
T Consensus 416 ~dgst~iwdi~eg~pik~y~~gh~-kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 416 YDGSTIIWDIWEGIPIKHYFIGHG-KLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred CCCceEeeecccCCcceeeecccc-eeeccccCCCCceEecCCCCCceEEecc
Confidence 9999999999 7877766433334 3778899999999998888899988876
No 184
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=1.3e-12 Score=128.50 Aligned_cols=283 Identities=17% Similarity=0.164 Sum_probs=190.2
Q ss_pred eeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCC---------C-eeEEEEeeeCCcceEEEEecccccccCCCccce
Q 001391 19 EISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA---------G-TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRV 87 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t---------g-~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~ 87 (1088)
.|.+-+++ |. +++|++|. +|+|-|..+.+ | ..+-.++.|++ +|..++|. |
T Consensus 12 tvf~qa~s--p~----~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdg-piy~~~f~--------d---- 72 (325)
T KOG0649|consen 12 TVFAQAIS--PS----KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDG-PIYYLAFH--------D---- 72 (325)
T ss_pred HHHHHhhC--Cc----ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCC-Ceeeeeee--------h----
Confidence 45666788 87 89999999 69999999853 2 23445577777 89999997 3
Q ss_pred eeEEEEECCCEEEEEEeccCCC-CCCCCCCccccccceeeeccCCC-----CcEEEEEEecccCCCCEEEEEEcCCcEEE
Q 001391 88 TFEVALFGEKRVKLFELNFELS-PNSQYQPETCVNLSLVQSLPRLS-----HWVFDVCFLKVCNGNRSLAIGCSDNSIRV 161 (1088)
Q Consensus 88 ~~~la~~gd~~v~iw~l~~~~~-~~~~~~~~~~~~~~~~~~l~~h~-----~~I~~v~f~p~~~d~~~lasgs~Dg~V~i 161 (1088)
..|.++|||.|+=|.++.... ...+ .-.....+.|. -.|+++-+.| ..+.+..++.|+.++-
T Consensus 73 -~~Lls~gdG~V~gw~W~E~~es~~~K--------~lwe~~~P~~~~~~evPeINam~ldP---~enSi~~AgGD~~~y~ 140 (325)
T KOG0649|consen 73 -DFLLSGGDGLVYGWEWNEEEESLATK--------RLWEVKIPMQVDAVEVPEINAMWLDP---SENSILFAGGDGVIYQ 140 (325)
T ss_pred -hheeeccCceEEEeeehhhhhhccch--------hhhhhcCccccCcccCCccceeEecc---CCCcEEEecCCeEEEE
Confidence 688888999999999885331 0000 00111112222 4689999998 6666777778999999
Q ss_pred EEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecc
Q 001391 162 WDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1088)
Q Consensus 162 Wd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 241 (1088)
||+++|+...++.+|..- +.++.. . .....+.+|+.||++++||.++.+....+.
T Consensus 141 ~dlE~G~i~r~~rGHtDY-vH~vv~--R-~~~~qilsG~EDGtvRvWd~kt~k~v~~ie--------------------- 195 (325)
T KOG0649|consen 141 VDLEDGRIQREYRGHTDY-VHSVVG--R-NANGQILSGAEDGTVRVWDTKTQKHVSMIE--------------------- 195 (325)
T ss_pred EEecCCEEEEEEcCCcce-eeeeee--c-ccCcceeecCCCccEEEEeccccceeEEec---------------------
Confidence 999999999999988753 334432 1 234579999999999999999433221110
Q ss_pred cccceeeeEEEeCCC-CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCE
Q 001391 242 QQHTAVNLFRLVGHE-GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSF 320 (1088)
Q Consensus 242 ~~~~~~~~~~~~gh~-~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~ 320 (1088)
. .+.-..++.|. .+|.+++-+ ..+++.|+. ..+.+|.++.... . ....-.+++..+.|.+..
T Consensus 196 ~---yk~~~~lRp~~g~wigala~~--edWlvCGgG-p~lslwhLrsse~--------t---~vfpipa~v~~v~F~~d~ 258 (325)
T KOG0649|consen 196 P---YKNPNLLRPDWGKWIGALAVN--EDWLVCGGG-PKLSLWHLRSSES--------T---CVFPIPARVHLVDFVDDC 258 (325)
T ss_pred c---ccChhhcCcccCceeEEEecc--CceEEecCC-CceeEEeccCCCc--------e---EEEecccceeEeeeecce
Confidence 0 00001122333 457777764 446665544 5799999998543 2 344455678889999999
Q ss_pred EEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEE
Q 001391 321 IITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVH 375 (1088)
Q Consensus 321 l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg-~~l~tg~~Dg~I~iw 375 (1088)
++++++.+.+.-|.+.|..-........ ..++..++..- ++|-.+|..+.+.++
T Consensus 259 vl~~G~g~~v~~~~l~Gvl~a~ip~~s~-~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 259 VLIGGEGNHVQSYTLNGVLQANIPVEST-ACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred EEEeccccceeeeeeccEEEEeccCCcc-ceeeecccCCceEEEEecccceeeeee
Confidence 9999999999999998876666544333 35666654332 455556666666554
No 185
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=4.2e-14 Score=154.81 Aligned_cols=261 Identities=16% Similarity=0.221 Sum_probs=177.7
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCC--------CeeEEEEeeeCCcceEEEEecccccccCCCccc
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA--------GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t--------g~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~ 86 (1088)
|...|.+++|. |. ...|++++ +++|.+|+++. -+.+.+|.+|.+ +|.+++++ +++.
T Consensus 293 ~~d~ir~l~~~--~s----ep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~g-PVl~v~v~-------~n~~- 357 (577)
T KOG0642|consen 293 HDDCIRALAFH--PS----EPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEG-PVLCVVVP-------SNGE- 357 (577)
T ss_pred chhhhhhhhcC--CC----CCeEEEeccccchhhhhhcccCCccccceeeeEEEecccC-ceEEEEec-------CCce-
Confidence 66778888998 76 56677776 89999999932 367899999888 89999998 6662
Q ss_pred eeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC
Q 001391 87 VTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (1088)
Q Consensus 87 ~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~ 166 (1088)
..+..+-|++|+.|++.....+.+.+.| ..+..++.||.+.||.+++++ ....|++++.||++++|+...
T Consensus 358 --~~ysgg~Dg~I~~w~~p~n~dp~ds~dp-----~vl~~~l~Ghtdavw~l~~s~---~~~~Llscs~DgTvr~w~~~~ 427 (577)
T KOG0642|consen 358 --HCYSGGIDGTIRCWNLPPNQDPDDSYDP-----SVLSGTLLGHTDAVWLLALSS---TKDRLLSCSSDGTVRLWEPTE 427 (577)
T ss_pred --EEEeeccCceeeeeccCCCCCcccccCc-----chhccceeccccceeeeeecc---cccceeeecCCceEEeeccCC
Confidence 3444444999999998843322223322 456678899999999999999 888899999999999999876
Q ss_pred CceEEEeccCC-ceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccc
Q 001391 167 SSIILEVHSPE-RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (1088)
Q Consensus 167 ~~~~~~~~~~~-~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 245 (1088)
... .++..+. ...-.++.+... +-...++....+.-.+.+.. .
T Consensus 428 ~~~-~~f~~~~e~g~Plsvd~~ss--~~a~~~~s~~~~~~~~~~~e---------------------------------v 471 (577)
T KOG0642|consen 428 ESP-CTFGEPKEHGYPLSVDRTSS--RPAHSLASFRFGYTSIDDME---------------------------------V 471 (577)
T ss_pred cCc-cccCCccccCCcceEeeccc--hhHhhhhhcccccccchhhh---------------------------------h
Confidence 655 2222111 112223333211 11122222222222223322 1
Q ss_pred eeeeEEEe-------CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-
Q 001391 246 AVNLFRLV-------GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT- 317 (1088)
Q Consensus 246 ~~~~~~~~-------gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~- 317 (1088)
...+..+. .-...+..+.++|.+.+.+++..|+.|+++|..++. .+. ....|...++++++.
T Consensus 472 ~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~--------~l~--s~~a~~~svtslai~~ 541 (577)
T KOG0642|consen 472 VSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK--------ILH--SMVAHKDSVTSLAIDP 541 (577)
T ss_pred hhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc--------cch--heeeccceecceeecC
Confidence 11111111 112457788899999999999999999999998853 332 667788899999997
Q ss_pred -CCEEEEEeCCCcEEEEcC-CCceeEEEcccC
Q 001391 318 -DSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347 (1088)
Q Consensus 318 -~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~ 347 (1088)
+.+|++++.||.+++|.+ ...++.....|.
T Consensus 542 ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 542 NGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred CCceEEeecCCceeehhhccchheeecccccc
Confidence 789999999999999999 444444444444
No 186
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=2.1e-14 Score=169.53 Aligned_cols=242 Identities=17% Similarity=0.266 Sum_probs=178.8
Q ss_pred eEEEEEeccCCCCCCC--CEEEEEe-CCeEEEEECCC---C---eeEEEEeeeCCcceEEEEecccccccCCCccceeeE
Q 001391 20 ISALCFVHLPSHLSSL--PFLLAGS-GSQVLLYDLEA---G---TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFE 90 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~--~~laag~-d~~I~vwd~~t---g---~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~ 90 (1088)
-..|+|. +. +++ .+||.|. ||.|.+||... + ..+.++..|++ .|.+++|+ +... .+
T Consensus 67 F~kL~W~--~~--g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G-~V~gLDfN-------~~q~---nl 131 (1049)
T KOG0307|consen 67 FNKLAWG--SY--GSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTG-PVLGLDFN-------PFQG---NL 131 (1049)
T ss_pred ceeeeec--cc--CCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCC-ceeeeecc-------ccCC---ce
Confidence 4577887 54 112 2566666 79999999865 2 45677888888 79999999 4441 57
Q ss_pred EEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce
Q 001391 91 VALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1088)
Q Consensus 91 la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~ 169 (1088)
||+++ ++.|.|||+.... ..|.+. -..-.+.|.+++|+. .....||+++.+|.+.|||++..+.
T Consensus 132 LASGa~~geI~iWDlnn~~---tP~~~~----------~~~~~~eI~~lsWNr--kvqhILAS~s~sg~~~iWDlr~~~p 196 (1049)
T KOG0307|consen 132 LASGADDGEILIWDLNKPE---TPFTPG----------SQAPPSEIKCLSWNR--KVSHILASGSPSGRAVIWDLRKKKP 196 (1049)
T ss_pred eeccCCCCcEEEeccCCcC---CCCCCC----------CCCCcccceEeccch--hhhHHhhccCCCCCceeccccCCCc
Confidence 77766 7999999999643 222221 112457899999986 2345789999999999999998888
Q ss_pred EEEeccCCc-eeEEEEeeecCCCCCcEEEEEecC---CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccc
Q 001391 170 ILEVHSPER-CLLYSMKLWGDNLEALRIASGTIY---NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (1088)
Q Consensus 170 ~~~~~~~~~-~~~~s~~~~~~s~~~~~l~sg~~d---g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 245 (1088)
+..+..+.+ ..+..+.++++. ...|++++.| -.|.+||++ ..
T Consensus 197 ii~ls~~~~~~~~S~l~WhP~~--aTql~~As~dd~~PviqlWDlR--------------------------------~a 242 (1049)
T KOG0307|consen 197 IIKLSDTPGRMHCSVLAWHPDH--ATQLLVASGDDSAPVIQLWDLR--------------------------------FA 242 (1049)
T ss_pred ccccccCCCccceeeeeeCCCC--ceeeeeecCCCCCceeEeeccc--------------------------------cc
Confidence 777765544 334456665433 3344444433 358999998 14
Q ss_pred eeeeEEEeCCCCCEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEE
Q 001391 246 AVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFI 321 (1088)
Q Consensus 246 ~~~~~~~~gh~~~V~~v~~sp~g-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l 321 (1088)
..+++.+.+|...|.++.|++.+ .+++|++.|+.|.+|+.+++ +.+. .+.....++..+.|. +..+
T Consensus 243 ssP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg--------Evl~--~~p~~~nW~fdv~w~pr~P~~~ 312 (1049)
T KOG0307|consen 243 SSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG--------EVLG--ELPAQGNWCFDVQWCPRNPSVM 312 (1049)
T ss_pred CCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc--------eEee--ecCCCCcceeeeeecCCCcchh
Confidence 56777889999999999999966 88999999999999999995 3443 444456789999998 5799
Q ss_pred EEEeCCCcEEEEcC
Q 001391 322 ITAGEDCTCRVWGS 335 (1088)
Q Consensus 322 ~sg~~Dg~i~vWd~ 335 (1088)
+.++.||.|-|+.+
T Consensus 313 A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 313 AAASFDGKISIYSL 326 (1049)
T ss_pred hhheeccceeeeee
Confidence 99999999999998
No 187
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=4.2e-13 Score=139.64 Aligned_cols=262 Identities=14% Similarity=0.184 Sum_probs=186.0
Q ss_pred ccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC------CceEEEeccCCceeEEEEeeecCCCCCc
Q 001391 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN------SSIILEVHSPERCLLYSMKLWGDNLEAL 194 (1088)
Q Consensus 121 ~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~------~~~~~~~~~~~~~~~~s~~~~~~s~~~~ 194 (1088)
+.-+.+.+.+|.+.|.++.|+. ++++||+|+.|..+++|+++. .+.+.....|.++.++++.| .....
T Consensus 45 R~~~qKD~~~H~GCiNAlqFS~---N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F---~~~N~ 118 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQFSH---NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEF---DLENR 118 (609)
T ss_pred cchhhhhhhhhccccceeeecc---CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEE---ccCCe
Confidence 3445567789999999999999 999999999999999999964 35566666778889999988 45677
Q ss_pred EEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe--CCCCCEEEEEEcCCCCEEE
Q 001391 195 RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV--GHEGSIFRIEWSSCGSKLV 272 (1088)
Q Consensus 195 ~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--gh~~~V~~v~~sp~g~~l~ 272 (1088)
.+++|..+++|..-|++ +.+.+..+. ...+.|+.+..+|....++
T Consensus 119 ~~~SG~~~~~VI~HDiE---------------------------------t~qsi~V~~~~~~~~~VY~m~~~P~DN~~~ 165 (609)
T KOG4227|consen 119 FLYSGERWGTVIKHDIE---------------------------------TKQSIYVANENNNRGDVYHMDQHPTDNTLI 165 (609)
T ss_pred eEecCCCcceeEeeecc---------------------------------cceeeeeecccCcccceeecccCCCCceEE
Confidence 89999999999999998 444454443 2335899999999999999
Q ss_pred EEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcCCC--ceeEEEcccC
Q 001391 273 SVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSDG--KQLKMIKEHI 347 (1088)
Q Consensus 273 s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~~~--~~~~~~~~h~ 347 (1088)
+.+.++.|.+||.+..+. .+.++.+........++.|+ +.+|+++++.+-+-+||... ..+....+..
T Consensus 166 ~~t~~~~V~~~D~Rd~~~-------~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~ 238 (609)
T KOG4227|consen 166 VVTRAKLVSFIDNRDRQN-------PISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFK 238 (609)
T ss_pred EEecCceEEEEeccCCCC-------CCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccc
Confidence 999999999999988542 22222333444567788887 68999999999999999832 2222211111
Q ss_pred C-----CCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCce
Q 001391 348 G-----RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYV 422 (1088)
Q Consensus 348 ~-----~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 422 (1088)
+ ..-.+..|+|+|+.+++--+-..-.+||+-.+....++... .++. .. ....+
T Consensus 239 ~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~---------------N~~G--Y~-----N~~T~ 296 (609)
T KOG4227|consen 239 GLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDH---------------NPNG--YC-----NIKTI 296 (609)
T ss_pred cCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccC---------------CCCc--ce-----eeeee
Confidence 1 01246789999998888776666677787543322222110 0111 00 01247
Q ss_pred EEEEeccCCeEEEEecCCeEEEEEeccC
Q 001391 423 RCLHLTSEDTLYIATNHGYLYHTKLCDM 450 (1088)
Q Consensus 423 ~~l~~s~~~~ll~~t~~g~i~~~~~~~~ 450 (1088)
++++|..+-.++.++.+-.|+.|++...
T Consensus 297 KS~~F~~D~~v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 297 KSMTFIDDYTVATGSDHWGIHIWKLPRA 324 (609)
T ss_pred eeeeeecceeeeccCcccceEEEecCCC
Confidence 8888988767666666666998887653
No 188
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.55 E-value=7.2e-13 Score=139.74 Aligned_cols=259 Identities=17% Similarity=0.228 Sum_probs=174.0
Q ss_pred eCCcceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEe
Q 001391 63 FHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFL 141 (1088)
Q Consensus 63 ~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~ 141 (1088)
|...+|..+.|. +++. ..++++| |..|+||.++.....+. ....+....|..|...|+++.|+
T Consensus 11 H~~~pv~s~dfq-------~n~~---~~laT~G~D~~iriW~v~r~~~~~~------~~~V~y~s~Ls~H~~aVN~vRf~ 74 (434)
T KOG1009|consen 11 HDHEPVYSVDFQ-------KNSL---NKLATAGGDKDIRIWKVNRSEPGGG------DMKVEYLSSLSRHTRAVNVVRFS 74 (434)
T ss_pred cCCCceEEEEec-------cCcc---cceecccCccceeeeeeeecCCCCC------ceeEEEeecccCCcceeEEEEEc
Confidence 345579999998 4431 3566654 99999999986542211 13467889999999999999999
Q ss_pred cccCCCCEEEEEEcCCcEEEEEcC--------C-----C--ceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEE
Q 001391 142 KVCNGNRSLAIGCSDNSIRVWDIS--------N-----S--SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEII 206 (1088)
Q Consensus 142 p~~~d~~~lasgs~Dg~V~iWd~~--------~-----~--~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~ 206 (1088)
| +|++||+|+.+|.|.+|... + . -.+.......+.-+|.+++ ++++..+++|+.|+.++
T Consensus 75 p---~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~W---s~d~~~l~s~s~dns~~ 148 (434)
T KOG1009|consen 75 P---DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAW---SPDSNFLVSGSVDNSVR 148 (434)
T ss_pred C---CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhc---cCCCceeeeeeccceEE
Confidence 9 99999999999999999876 2 1 1122222223344566655 68999999999999999
Q ss_pred EEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 001391 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR 286 (1088)
Q Consensus 207 vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~ 286 (1088)
+||+. .+.....+.+|..-|..++|.|-++++++-+.|+..+.+.+.
T Consensus 149 l~Dv~---------------------------------~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 149 LWDVH---------------------------------AGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred EEEec---------------------------------cceeEeeccccccccceeecchhhhhhhhhccCcccceeeee
Confidence 99999 666777777777778888887777777777777755555544
Q ss_pred CCccc--------------------------------------CCC---------------C--------------ceee
Q 001391 287 AEYWK--------------------------------------DSD---------------S--------------IEEV 299 (1088)
Q Consensus 287 ~~~~~--------------------------------------~~~---------------~--------------~~~i 299 (1088)
..+.. .++ . .++.
T Consensus 196 ~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~ 275 (434)
T KOG1009|consen 196 LKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPA 275 (434)
T ss_pred eeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCce
Confidence 32211 000 0 0000
Q ss_pred eceeeeccCcceEEEEECC--------------------CEEEEEeCCCcEEEEcC-CCceeEEEc-ccCCCCeEEEEEc
Q 001391 300 GSSVLYGHNARVWDCCLTD--------------------SFIITAGEDCTCRVWGS-DGKQLKMIK-EHIGRGIWRCLYD 357 (1088)
Q Consensus 300 ~~~~~~~h~~~I~~v~~~~--------------------~~l~sg~~Dg~i~vWd~-~~~~~~~~~-~h~~~~V~~l~~~ 357 (1088)
..+.+.......+.|++ -.++.++ ...+.+||. .-.++.... -|-. +|+.++|+
T Consensus 276 --~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~-~iTDiaws 351 (434)
T KOG1009|consen 276 --ARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYS-AITDIAWS 351 (434)
T ss_pred --eecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeee-eecceeec
Confidence 01111222223333321 1234444 457899998 455665543 3544 79999999
Q ss_pred CCCCEEEEEeCCCCEEEEEcCCC
Q 001391 358 SLSSLLVTAGFDSAIKVHQFQAF 380 (1088)
Q Consensus 358 ~dg~~l~tg~~Dg~I~iwd~~~~ 380 (1088)
+||..|+..+.||...+-.++..
T Consensus 352 ~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 352 DDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred CCCcEEEEeccCCceEEEEEcch
Confidence 99999999999998888777543
No 189
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=9.1e-14 Score=149.30 Aligned_cols=310 Identities=14% Similarity=0.110 Sum_probs=220.6
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL- 93 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~- 93 (1088)
|.|.|..|.|. .. +..|++|+ |..|.+||+.+++....|...|.+.|+...|-|. .+. ..++.
T Consensus 141 H~GcVntV~FN--~~----Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~-----s~d----~ti~~~ 205 (559)
T KOG1334|consen 141 HKGCVNTVHFN--QR----GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPF-----SGD----RTIVTS 205 (559)
T ss_pred CCCccceeeec--cc----CceeeccCccceEEeehhhccCcccccccccccchhhhhccCC-----CCC----cCceec
Confidence 77999999999 66 88999999 5999999999999988888767778999999865 332 44555
Q ss_pred ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEe
Q 001391 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1088)
Q Consensus 94 ~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~ 173 (1088)
+.|+.+++=.+.... ..+....+..|.+.|+.++..|. ...-+.+++.|+.+.-.|+........+
T Consensus 206 s~dgqvr~s~i~~t~------------~~e~t~rl~~h~g~vhklav~p~--sp~~f~S~geD~~v~~~Dlr~~~pa~~~ 271 (559)
T KOG1334|consen 206 SRDGQVRVSEILETG------------YVENTKRLAPHEGPVHKLAVEPD--SPKPFLSCGEDAVVFHIDLRQDVPAEKF 271 (559)
T ss_pred cccCceeeeeecccc------------ceecceecccccCccceeeecCC--CCCcccccccccceeeeeeccCCcccee
Confidence 559999998876432 13345567789999999999992 3357889999999999999876543322
Q ss_pred c---c--CCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee
Q 001391 174 H---S--PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1088)
Q Consensus 174 ~---~--~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 248 (1088)
. . +..-.+++++.. ..+...+++|+.|-.+++||.+.-...+.. +.+. ...+
T Consensus 272 ~cr~~~~~~~v~L~~Ia~~--P~nt~~faVgG~dqf~RvYD~R~~~~e~~n---------------~~~~------~f~p 328 (559)
T KOG1334|consen 272 VCREADEKERVGLYTIAVD--PRNTNEFAVGGSDQFARVYDQRRIDKEENN---------------GVLD------KFCP 328 (559)
T ss_pred eeeccCCccceeeeeEecC--CCCccccccCChhhhhhhhcccchhhcccc---------------chhh------hcCC
Confidence 2 1 222356666653 334568999999999999998721111000 0000 0111
Q ss_pred eEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCc----eeeeceeeeccCc--ceEEEEECC---C
Q 001391 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSI----EEVGSSVLYGHNA--RVWDCCLTD---S 319 (1088)
Q Consensus 249 ~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~----~~i~~~~~~~h~~--~I~~v~~~~---~ 319 (1088)
-+......-.|++++|+.++.-++++..|-.|++++-..+.-..+.+. +.++ ....||.. .|-.+-|-| .
T Consensus 329 ~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k-~vYKGHrN~~TVKgVNFfGPrsE 407 (559)
T KOG1334|consen 329 HHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVK-RVYKGHRNSRTVKGVNFFGPRSE 407 (559)
T ss_pred ccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccc-hhhcccccccccceeeeccCccc
Confidence 111112335699999998887777777888899995443322111111 2222 35778865 477888874 7
Q ss_pred EEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 320 FIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 320 ~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
++++|+.-|.|.+|+- +++.+..+.+-.. -|.||.-+|--..||+.|-|..||||...+
T Consensus 408 yVvSGSDCGhIFiW~K~t~eii~~MegDr~-VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 408 YVVSGSDCGHIFIWDKKTGEIIRFMEGDRH-VVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred eEEecCccceEEEEecchhHHHHHhhcccc-eEeccCCCCCCchhhccCCccceeeecCCc
Confidence 9999999999999999 7788888877766 699999999999999999999999998743
No 190
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=6.6e-12 Score=123.56 Aligned_cols=246 Identities=11% Similarity=0.127 Sum_probs=167.6
Q ss_pred ceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d 146 (1088)
.|+.-+++ |.++ .+++...+|.|.+..++.-.. .++..|. ...+-...+|.++|+.++|..
T Consensus 12 tvf~qa~s-------p~~~---~l~agn~~G~iav~sl~sl~s-~sa~~~g----k~~iv~eqahdgpiy~~~f~d---- 72 (325)
T KOG0649|consen 12 TVFAQAIS-------PSKQ---YLFAGNLFGDIAVLSLKSLDS-GSAEPPG----KLKIVPEQAHDGPIYYLAFHD---- 72 (325)
T ss_pred HHHHHhhC-------Ccce---EEEEecCCCeEEEEEehhhhc-cccCCCC----CcceeeccccCCCeeeeeeeh----
Confidence 35666777 5552 444445589999999984321 1222221 233445589999999999974
Q ss_pred CCEEEEEEcCCcEEEEEcCCCce------EEEeccCC------ceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCc
Q 001391 147 NRSLAIGCSDNSIRVWDISNSSI------ILEVHSPE------RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (1088)
Q Consensus 147 ~~~lasgs~Dg~V~iWd~~~~~~------~~~~~~~~------~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~ 214 (1088)
.+|.+|+ ||.|+=|....... +.++..|. -..+.+|-+ .|..+-++.++.|+.++-||++
T Consensus 73 -~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~l---dP~enSi~~AgGD~~~y~~dlE--- 144 (325)
T KOG0649|consen 73 -DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWL---DPSENSILFAGGDGVIYQVDLE--- 144 (325)
T ss_pred -hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEe---ccCCCcEEEecCCeEEEEEEec---
Confidence 5677776 69999998764322 11111111 112333433 3445555555589999999999
Q ss_pred cccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCC
Q 001391 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD 294 (1088)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~ 294 (1088)
+++....++||++-|.++.--.....++||++||++|+||.++.+.
T Consensus 145 ------------------------------~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~---- 190 (325)
T KOG0649|consen 145 ------------------------------DGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKH---- 190 (325)
T ss_pred ------------------------------CCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccce----
Confidence 8888999999999999999866677899999999999999999765
Q ss_pred Cceeeece----eeecc-CcceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeC
Q 001391 295 SIEEVGSS----VLYGH-NARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF 368 (1088)
Q Consensus 295 ~~~~i~~~----~~~~h-~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~ 368 (1088)
.+.+.++ .+..| ...|.+++.+...++.|+ ...+.+|.+ ..++...+.-. + ++..+.|..| .++.+|.
T Consensus 191 -v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~t~vfpip-a-~v~~v~F~~d--~vl~~G~ 264 (325)
T KOG0649|consen 191 -VSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFPIP-A-RVHLVDFVDD--CVLIGGE 264 (325)
T ss_pred -eEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCceEEEecc-c-ceeEeeeecc--eEEEecc
Confidence 3333221 22233 345778888888888766 457899999 55666665433 3 4778888765 5788888
Q ss_pred CCCEEEEEcCC
Q 001391 369 DSAIKVHQFQA 379 (1088)
Q Consensus 369 Dg~I~iwd~~~ 379 (1088)
.+.|.-|.+.+
T Consensus 265 g~~v~~~~l~G 275 (325)
T KOG0649|consen 265 GNHVQSYTLNG 275 (325)
T ss_pred ccceeeeeecc
Confidence 88899998865
No 191
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=2e-13 Score=149.62 Aligned_cols=261 Identities=15% Similarity=0.212 Sum_probs=165.3
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC
Q 001391 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED 327 (1088)
Q Consensus 250 ~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D 327 (1088)
.++..|.+.|+.++|+|-...|++++.|+++++|++...........+++ +++.+|.++|.|+++. +..+++|+.|
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi--~tfraH~gPVl~v~v~~n~~~~ysgg~D 365 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPI--LTFRAHEGPVLCVVVPSNGEHCYSGGID 365 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeee--EEEecccCceEEEEecCCceEEEeeccC
Confidence 36778999999999999999999999999999999954332233334555 4999999999999998 7899999999
Q ss_pred CcEEEEcCC--C---------ceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCC
Q 001391 328 CTCRVWGSD--G---------KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNG 396 (1088)
Q Consensus 328 g~i~vWd~~--~---------~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 396 (1088)
|+|+.|++. . .....+.+|.+ .||.+++++....|++++.||++++|+.......++....
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtd-avw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~------- 437 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTD-AVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPK------- 437 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhccceecccc-ceeeeeecccccceeeecCCceEEeeccCCcCccccCCcc-------
Confidence 999999651 1 23456889998 6999999999999999999999999998553322222111
Q ss_pred CcceEEeeeCCCccceeeccCCCCceEEEEeccCC--eEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCC
Q 001391 397 RTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED--TLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLS 474 (1088)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~--~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 474 (1088)
..++..++.+..-. ..++.-..+ .+.+.+.....-..++.... .+.. .....
T Consensus 438 ---------------------e~g~Plsvd~~ss~~a~~~~s~~~~---~~~~~~~ev~s~~~~~~s~~-~~~~-~~~~~ 491 (577)
T KOG0642|consen 438 ---------------------EHGYPLSVDRTSSRPAHSLASFRFG---YTSIDDMEVVSDLLIFESSA-SPGP-RRYPQ 491 (577)
T ss_pred ---------------------ccCCcceEeeccchhHhhhhhcccc---cccchhhhhhhheeeccccC-CCcc-cccCc
Confidence 01122222222111 111111111 11111111111001100000 0000 00000
Q ss_pred CCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCC
Q 001391 475 NEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCD 554 (1088)
Q Consensus 475 ~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~ 554 (1088)
.+...+-+..++.+++.+|+.|++++..++......... .....+ .++.++|-+|.+++.|+.+++|.+..
T Consensus 492 in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~-------~~svts--lai~~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 492 INKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAH-------KDSVTS--LAIDPNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred cceEEecCCCCeeEecccCCceecccccccccchheeec-------cceecc--eeecCCCceEEeecCCceeehhhccc
Confidence 001122344588999999999999998877654322211 111112 45779999999999999999999864
Q ss_pred C
Q 001391 555 P 555 (1088)
Q Consensus 555 ~ 555 (1088)
.
T Consensus 563 k 563 (577)
T KOG0642|consen 563 K 563 (577)
T ss_pred h
Confidence 3
No 192
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.51 E-value=2.8e-14 Score=161.54 Aligned_cols=212 Identities=20% Similarity=0.335 Sum_probs=159.8
Q ss_pred ccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEe
Q 001391 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (1088)
Q Consensus 121 ~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~ 200 (1088)
..+.++.+.+|...|+|+.|.. .|.++++|+.|..++||..+++.++....+++.. +..++. +.+..++++++
T Consensus 179 kmk~ikrLlgH~naVyca~fDr---tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~d-itdlav---s~~n~~iaaaS 251 (1113)
T KOG0644|consen 179 KMKNIKRLLGHRNAVYCAIFDR---TGRYIITGSDDRLVKIWSMETARCLASCRGHSGD-ITDLAV---SSNNTMIAAAS 251 (1113)
T ss_pred HHHHHHHHHhhhhheeeeeecc---ccceEeecCccceeeeeeccchhhhccCCCCccc-cchhcc---chhhhhhhhcc
Confidence 3667888999999999999998 9999999999999999999999999999888764 233333 45677899999
Q ss_pred cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcE
Q 001391 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280 (1088)
Q Consensus 201 ~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v 280 (1088)
.|..|++|.+. .+.++..+.||++.|++++|+|-. +.+.||++
T Consensus 252 ~D~vIrvWrl~---------------------------------~~~pvsvLrghtgavtaiafsP~~----sss~dgt~ 294 (1113)
T KOG0644|consen 252 NDKVIRVWRLP---------------------------------DGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTC 294 (1113)
T ss_pred cCceEEEEecC---------------------------------CCchHHHHhccccceeeeccCccc----cCCCCCce
Confidence 99999999998 788899999999999999999965 78899999
Q ss_pred EEEEcCCC-cccCCC-----Cceeeec--------e--------eeeccC--------cceEEEEEC---CCEEEEEeCC
Q 001391 281 RIWEVRAE-YWKDSD-----SIEEVGS--------S--------VLYGHN--------ARVWDCCLT---DSFIITAGED 327 (1088)
Q Consensus 281 ~iWd~~~~-~~~~~~-----~~~~i~~--------~--------~~~~h~--------~~I~~v~~~---~~~l~sg~~D 327 (1088)
++||.+-. ..-.+. ....+.. . ....|. ..+.-+.++ ..+.+++-.+
T Consensus 295 ~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~ 374 (1113)
T KOG0644|consen 295 RIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARND 374 (1113)
T ss_pred EeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeee
Confidence 99998721 100000 0000000 0 000111 111111111 2455566667
Q ss_pred CcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEEEc
Q 001391 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 328 g~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg-~~l~tg~~Dg~I~iwd~ 377 (1088)
..+++|++ +|..++.+.+|.. .+..+.++|-. ....+++.||...|||+
T Consensus 375 ~~~~vwnl~~g~l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi 425 (1113)
T KOG0644|consen 375 HRLCVWNLYTGQLLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDI 425 (1113)
T ss_pred eEeeeeecccchhhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeec
Confidence 78999999 8999999999988 69999999954 46678999999999998
No 193
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.51 E-value=5.6e-13 Score=139.66 Aligned_cols=124 Identities=24% Similarity=0.425 Sum_probs=106.7
Q ss_pred EEeCCCCCEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeC
Q 001391 251 RLVGHEGSIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGE 326 (1088)
Q Consensus 251 ~~~gh~~~V~~v~~sp~-g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~ 326 (1088)
.+.||+++|..++|+|- ...++|||+|.+|.+|.+..+...... .+++. .+.||..+|--++|+ .+.|++++.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l-tepvv--~L~gH~rrVg~V~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL-TEPVV--ELYGHQRRVGLVQWHPTAPNVLLSAGS 152 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc-ccceE--EEeecceeEEEEeecccchhhHhhccC
Confidence 35699999999999994 467899999999999999876542111 13333 889999999999999 589999999
Q ss_pred CCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 327 DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 327 Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
|.+|.+|++ +|+.+-++. |.+ -|+++.|+.||.+|+|.+.|..|+|||.+.
T Consensus 153 Dn~v~iWnv~tgeali~l~-hpd-~i~S~sfn~dGs~l~TtckDKkvRv~dpr~ 204 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLD-HPD-MVYSMSFNRDGSLLCTTCKDKKVRVIDPRR 204 (472)
T ss_pred CceEEEEeccCCceeeecC-CCC-eEEEEEeccCCceeeeecccceeEEEcCCC
Confidence 999999999 888888887 887 699999999999999999999999999954
No 194
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.50 E-value=4.2e-13 Score=133.60 Aligned_cols=296 Identities=14% Similarity=0.125 Sum_probs=182.4
Q ss_pred eeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 302 SVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 302 ~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+.+.+|.+.++++.|. +.+|++|..-|.+.+|++ +.+.+..++.+....|+.+...|+ ..|.+-++|+.+.+|++..
T Consensus 8 fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~ 86 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAY 86 (323)
T ss_pred eEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccC
Confidence 4778999999999998 778999999999999999 566677778666668999998887 4689999999999999954
Q ss_pred CCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEecc-----CC----eEEEEecCCeEEEEEeccC
Q 001391 380 FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTS-----ED----TLYIATNHGYLYHTKLCDM 450 (1088)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-----~~----~ll~~t~~g~i~~~~~~~~ 450 (1088)
... ..+.++. ++++.|.+ +. .++..-..|.- +....+.
T Consensus 87 s~~---------------i~i~Si~-----------------~nslgFCrfSl~~~~k~~eqll~yp~rgsd-e~h~~D~ 133 (323)
T KOG0322|consen 87 SAF---------------ISIHSIV-----------------VNSLGFCRFSLVKKPKNSEQLLEYPSRGSD-ETHKQDG 133 (323)
T ss_pred cce---------------EEEeeee-----------------ccccccccceeccCCCcchhheecCCcccc-hhhhhcc
Confidence 211 0011110 11111111 00 11111111110 0001111
Q ss_pred CcceeEEeee---ecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeee-----ccccc
Q 001391 451 DSVNWNKILQ---VSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWS-----AGIER 522 (1088)
Q Consensus 451 ~~~~~~~~~~---~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~-----~~~~~ 522 (1088)
....-..+.. ....+.+++.+.... +...-+++.|-++|.+.+|+++.+... +.+...+. ..+..
T Consensus 134 g~~tqv~i~dd~~~~Klgsvmc~~~~~~-----c~s~~lllaGyEsghvv~wd~S~~~~~--~~~~~~~kv~~~~ash~q 206 (323)
T KOG0322|consen 134 GDTTQVQIADDSERSKLGSVMCQDKDHA-----CGSTFLLLAGYESGHVVIWDLSTGDKI--IQLPQSSKVESPNASHKQ 206 (323)
T ss_pred CccceeEccCchhccccCceeeeecccc-----ccceEEEEEeccCCeEEEEEccCCcee--eccccccccccchhhccC
Confidence 1100001111 112344555553221 334467888999999999999986322 11111111 11222
Q ss_pred eeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCC
Q 001391 523 QLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRG 602 (1088)
Q Consensus 523 ~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg 602 (1088)
..++.- +.+....=++|+.+..+..|.+..... . +.++.+.... .-.|..+.+-||+++||+++-||
T Consensus 207 pvlsld--yas~~~rGisgga~dkl~~~Sl~~s~g--s--------lq~~~e~~lk-npGv~gvrIRpD~KIlATAGWD~ 273 (323)
T KOG0322|consen 207 PVLSLD--YASSCDRGISGGADDKLVMYSLNHSTG--S--------LQIRKEITLK-NPGVSGVRIRPDGKILATAGWDH 273 (323)
T ss_pred cceeee--echhhcCCcCCCccccceeeeeccccC--c--------ccccceEEec-CCCccceEEccCCcEEeecccCC
Confidence 233321 222223345678888999999875421 1 1122221111 22377788889999999999999
Q ss_pred cEEEEeCCcccccccccccccccCcceeecccccccceeEEEEEeccCCceEEEEecCCCeEEEEEe
Q 001391 603 NLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEY 669 (1088)
Q Consensus 603 ~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~ 669 (1088)
.|+||+.. .+.|+.+++-|. ..|.+++|+ ++...++.+|.|+.|.+|++
T Consensus 274 RiRVyswr-------------tl~pLAVLkyHs--agvn~vAfs---pd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 274 RIRVYSWR-------------TLNPLAVLKYHS--AGVNAVAFS---PDCELMAAASKDARISLWKL 322 (323)
T ss_pred cEEEEEec-------------cCCchhhhhhhh--cceeEEEeC---CCCchhhhccCCceEEeeec
Confidence 99999866 677888888666 589999999 56688999999999999986
No 195
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.49 E-value=3.9e-12 Score=130.42 Aligned_cols=223 Identities=13% Similarity=0.125 Sum_probs=169.8
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEeC-CeEEEEECCCC---eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGSG-SQVLLYDLEAG---TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~d-~~I~vwd~~tg---~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
..||+|.+|+ +| +..+|.+.. ..|.||..... +..+++..|.. .|.+|+|+ |..+ +++.
T Consensus 10 ~~pitchAwn--~d----rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~-~vtgvdWa-------p~sn---rIvt 72 (361)
T KOG1523|consen 10 LEPITCHAWN--SD----RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDK-IVTGVDWA-------PKSN---RIVT 72 (361)
T ss_pred cCceeeeeec--CC----CceEEeccCCceEEEEEecCCCCceeceehhhhCc-ceeEEeec-------CCCC---ceeE
Confidence 4799999999 88 888998885 79999998765 46788888776 79999999 4442 5666
Q ss_pred EECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce---
Q 001391 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI--- 169 (1088)
Q Consensus 93 ~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~--- 169 (1088)
++.|+...||....+. ..++.-.+..|+...+++.|+| ..+.+|+|+.-..|.||-++....
T Consensus 73 cs~drnayVw~~~~~~------------~WkptlvLlRiNrAAt~V~WsP---~enkFAVgSgar~isVcy~E~ENdWWV 137 (361)
T KOG1523|consen 73 CSHDRNAYVWTQPSGG------------TWKPTLVLLRINRAATCVKWSP---KENKFAVGSGARLISVCYYEQENDWWV 137 (361)
T ss_pred ccCCCCccccccCCCC------------eeccceeEEEeccceeeEeecC---cCceEEeccCccEEEEEEEecccceeh
Confidence 6779999999985332 2556666778899999999999 999999999999999998875433
Q ss_pred EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeee
Q 001391 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (1088)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 249 (1088)
.+.++.+.++.+.++.++ +++.++++|+.|+..+|+..--...... ...++=|... .-+..+
T Consensus 138 sKhikkPirStv~sldWh---pnnVLlaaGs~D~k~rVfSayIK~Vdek----pap~pWgsk~-----------PFG~lm 199 (361)
T KOG1523|consen 138 SKHIKKPIRSTVTSLDWH---PNNVLLAAGSTDGKCRVFSAYIKGVDEK----PAPTPWGSKM-----------PFGQLM 199 (361)
T ss_pred hhhhCCccccceeeeecc---CCcceecccccCcceeEEEEeeeccccC----CCCCCCccCC-----------cHHHHH
Confidence 345667778888888885 6688999999999999998652111111 0111111100 124455
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 001391 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (1088)
Q Consensus 250 ~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~ 289 (1088)
.++....++|..+.|+|+|..|+-.+.|.++.+=|.....
T Consensus 200 ~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 200 SEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred HhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 5555677899999999999999999999999999887753
No 196
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.48 E-value=7.8e-12 Score=144.85 Aligned_cols=276 Identities=16% Similarity=0.120 Sum_probs=186.5
Q ss_pred CeEEEEECCCC-eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccc
Q 001391 44 SQVLLYDLEAG-TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVN 121 (1088)
Q Consensus 44 ~~I~vwd~~tg-~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~ 121 (1088)
+.+.||+++.. ..-..+.. ...|.+++|+|.. | .++++ ..+|+|.+||+....... .
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~--~s~v~~~~f~p~~----p------~ll~gG~y~GqV~lWD~~~~~~~~---------~ 280 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLES--PSEVTCLKFCPFD----P------NLLAGGCYNGQVVLWDLRKGSDTP---------P 280 (555)
T ss_pred ceEEEEecCCCCCceEEEec--CCceeEEEeccCC----c------ceEEeeccCceEEEEEccCCCCCC---------C
Confidence 37999999876 33333333 3369999999541 2 34444 449999999998654110 1
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEE---e--cc------CCceeEEEEeeecCC
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE---V--HS------PERCLLYSMKLWGDN 190 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~---~--~~------~~~~~~~s~~~~~~s 190 (1088)
...-.....|.+.++.+.|.... .+.-+++++.||.|..|+++.-..... + .. .......++.|...
T Consensus 281 s~ls~~~~sh~~~v~~vvW~~~~-~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~- 358 (555)
T KOG1587|consen 281 SGLSALEVSHSEPVTAVVWLQNE-HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT- 358 (555)
T ss_pred cccccccccCCcCeEEEEEeccC-CCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccC-
Confidence 12223345789999999998732 235689999999999998865332110 0 01 11233456666544
Q ss_pred CCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCE
Q 001391 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK 270 (1088)
Q Consensus 191 ~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~ 270 (1088)
+...++.|+.+|.|.--.....+.... ...+....+..|.+.|.++.++|=+..
T Consensus 359 -~p~~FiVGTe~G~v~~~~r~g~~~~~~-------------------------~~~~~~~~~~~h~g~v~~v~~nPF~~k 412 (555)
T KOG1587|consen 359 -DPNHFIVGTEEGKVYKGCRKGYTPAPE-------------------------VSYKGHSTFITHIGPVYAVSRNPFYPK 412 (555)
T ss_pred -CCceEEEEcCCcEEEEEeccCCccccc-------------------------ccccccccccccCcceEeeecCCCccc
Confidence 445799999999998744331000000 011334456679999999999997766
Q ss_pred EEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcC---CCceeEEEc
Q 001391 271 LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS---DGKQLKMIK 344 (1088)
Q Consensus 271 l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~---~~~~~~~~~ 344 (1088)
++..+.|.+|+||...... .++ +.+..+...+++++|+ +..|+++..||.+.+||+ ...++.+..
T Consensus 413 ~fls~gDW~vriWs~~~~~-------~Pl--~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~ 483 (555)
T KOG1587|consen 413 NFLSVGDWTVRIWSEDVIA-------SPL--LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK 483 (555)
T ss_pred eeeeeccceeEeccccCCC-------Ccc--hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccc
Confidence 5555559999999977321 222 2555677779999999 578999999999999999 344555555
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 345 EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 345 ~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
.+.. ....+.++++|+.|++|...|++.+|++.
T Consensus 484 ~~~~-~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 484 VCSP-ALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred cccc-ccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 4533 56778888889999999999999999995
No 197
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.48 E-value=8.3e-12 Score=147.76 Aligned_cols=185 Identities=12% Similarity=0.151 Sum_probs=121.3
Q ss_pred EEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecc
Q 001391 162 WDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1088)
Q Consensus 162 Wd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 241 (1088)
|+. .|..+.+++.|..... ..+. .++++.++++|+.||+|++|+.+.-. +..
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~-k~a~--s~~~~s~FvsgS~DGtVKvW~~~k~~--~~~---------------------- 1085 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVI-KLAV--SSEHTSLFVSGSDDGTVKVWNLRKLE--GEG---------------------- 1085 (1431)
T ss_pred CCc-cceEeehhhhcccccc-ceee--cCCCCceEEEecCCceEEEeeehhhh--cCc----------------------
Confidence 443 4667777777665544 3332 25667899999999999999987111 100
Q ss_pred cccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEE-EEC---
Q 001391 242 QQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDC-CLT--- 317 (1088)
Q Consensus 242 ~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v-~~~--- 317 (1088)
...+...+..--...+.++.+.+.+..+|.++.||.|++.++......... ........... .+.+.++ +|.
T Consensus 1086 --~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~-~~~~ri~n~~~-~g~vv~m~a~~~~~ 1161 (1431)
T KOG1240|consen 1086 --GSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRV-ATQVRIPNLKK-DGVVVSMHAFTAIV 1161 (1431)
T ss_pred --ceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccce-eeeeecccccC-CCceEEeecccccc
Confidence 022333334435678999999999999999999999999998763210000 01111001111 2223333 333
Q ss_pred CC-EEEEEeCCCcEEEEcC-CCceeEE--EcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 318 DS-FIITAGEDCTCRVWGS-DGKQLKM--IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 318 ~~-~l~sg~~Dg~i~vWd~-~~~~~~~--~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
.. .++-+...+.|..||. ....+.. ....+| .|++++.+|.+.+++.|...|.+.+||++-
T Consensus 1162 ~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG-~vTSi~idp~~~WlviGts~G~l~lWDLRF 1226 (1431)
T KOG1240|consen 1162 QSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG-LVTSIVIDPWCNWLVIGTSRGQLVLWDLRF 1226 (1431)
T ss_pred cceeEEEEEeccceEEecchhhhhHHhhhcCcccc-ceeEEEecCCceEEEEecCCceEEEEEeec
Confidence 34 7788888899999998 3222222 223345 599999999999999999999999999964
No 198
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=5.4e-12 Score=146.83 Aligned_cols=298 Identities=15% Similarity=0.192 Sum_probs=198.1
Q ss_pred cEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCC--ceeEEEEeeecCCCCCcEEEEEecCCeEEEEEec
Q 001391 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE--RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 134 ~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~--~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
.-..+.|+| =...++++...-.|++||.+.++.+..+..+. ...+..+.+.. ..|..++.+|+.||.|+||+--
T Consensus 1066 ~pk~~~~hp---f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liN-e~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1066 PPKTLKFHP---FEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELIN-EQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred CCceeeecC---CCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeec-ccchhheeeeccCceEEEeccc
Confidence 345677887 66688888877889999999999887776433 33455565543 3567789999999999999754
Q ss_pred cCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE---e----CCCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 001391 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL---V----GHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (1088)
Q Consensus 212 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~----gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd 284 (1088)
... |. +.+.+... . +-.+.=.-+.|-....+|+++++-+.|||||
T Consensus 1142 ~~~-------------------------~~---~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWD 1193 (1387)
T KOG1517|consen 1142 ADK-------------------------WK---KPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWD 1193 (1387)
T ss_pred ccc-------------------------cC---CceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEe
Confidence 100 00 11111111 1 1111114467877778888888899999999
Q ss_pred cCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcCC----CceeEEEcccCCC-CeEEEEE
Q 001391 285 VRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSD----GKQLKMIKEHIGR-GIWRCLY 356 (1088)
Q Consensus 285 ~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~~----~~~~~~~~~h~~~-~V~~l~~ 356 (1088)
..... .+.- ...+-...|+++.-+ ++.|+.|..||.+|+||.. ...+...+.|... +|..+.+
T Consensus 1194 a~~E~--------~~~d-iP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~sl 1264 (1387)
T KOG1517|consen 1194 AHKEQ--------VVAD-IPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSL 1264 (1387)
T ss_pred cccce--------eEee-cccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEe
Confidence 98843 2221 333445556766654 6899999999999999982 2356777888762 3889999
Q ss_pred cCCCCE-EEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEE
Q 001391 357 DSLSSL-LVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI 435 (1088)
Q Consensus 357 ~~dg~~-l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~ 435 (1088)
.++|-. |++|+.||.|++||++.....++ +++. ..++ -++.++++...+...+++
T Consensus 1265 q~~G~~elvSgs~~G~I~~~DlR~~~~e~~---------------~~iv--------~~~~-yGs~lTal~VH~hapiiA 1320 (1387)
T KOG1517|consen 1265 QRQGLGELVSGSQDGDIQLLDLRMSSKETF---------------LTIV--------AHWE-YGSALTALTVHEHAPIIA 1320 (1387)
T ss_pred ecCCCcceeeeccCCeEEEEecccCccccc---------------ceee--------eccc-cCccceeeeeccCCCeee
Confidence 887764 99999999999999975321111 1110 0010 012478888888888888
Q ss_pred EecCCeEEEEEeccCCcc--eeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCC
Q 001391 436 ATNHGYLYHTKLCDMDSV--NWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGD 504 (1088)
Q Consensus 436 ~t~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~ 504 (1088)
+++.+.|..|++....-. +.....-+.....+.|+.+++.. -++|.|..|..|.||.....
T Consensus 1321 sGs~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~--------~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1321 SGSAQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHR--------LLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ecCcceEEEEecChhhhcccccCcccccCcCCCcceeeecchh--------HhhhhccCCceEEEeecCCc
Confidence 877777776655443221 11122334445667888887654 67899999999999987654
No 199
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.47 E-value=2e-11 Score=127.67 Aligned_cols=241 Identities=15% Similarity=0.171 Sum_probs=166.9
Q ss_pred CceEEecCCCc------eeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeee--CCcceEEEEeccc
Q 001391 5 DLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVF--HGIRLHGISCNFI 76 (1088)
Q Consensus 5 ~i~iWdl~~g~------~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~--~~~~V~~i~~s~~ 76 (1088)
.+++.+.+++. +..+|.+|.+. ++.|+++-...|+|||+.+-++++++..- +..++.++.++
T Consensus 69 ~Lkv~~~Kk~~~ICe~~fpt~IL~VrmN--------r~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n-- 138 (391)
T KOG2110|consen 69 KLKVVHFKKKTTICEIFFPTSILAVRMN--------RKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPN-- 138 (391)
T ss_pred eEEEEEcccCceEEEEecCCceEEEEEc--------cceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccC--
Confidence 36677777665 56778899998 55677776666999999999999999864 33335444444
Q ss_pred ccccCCCccceeeEEEEEC---CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEE
Q 001391 77 NCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG 153 (1088)
Q Consensus 77 ~~~~~~d~~~~~~~la~~g---d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg 153 (1088)
+++ -++|.=+ .|.|.|||... .+.+..+..|.+.+-+++|++ +|.+|||+
T Consensus 139 -----~~n----~ylAyp~s~t~GdV~l~d~~n---------------l~~v~~I~aH~~~lAalafs~---~G~llATA 191 (391)
T KOG2110|consen 139 -----NAN----CYLAYPGSTTSGDVVLFDTIN---------------LQPVNTINAHKGPLAALAFSP---DGTLLATA 191 (391)
T ss_pred -----CCC----ceEEecCCCCCceEEEEEccc---------------ceeeeEEEecCCceeEEEECC---CCCEEEEe
Confidence 444 4666644 58999999884 678888899999999999999 99999999
Q ss_pred EcCCc-EEEEEcCCCceEEEeccCCc-eeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCC
Q 001391 154 CSDNS-IRVWDISNSSIILEVHSPER-CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSS 231 (1088)
Q Consensus 154 s~Dg~-V~iWd~~~~~~~~~~~~~~~-~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~ 231 (1088)
+..|+ |||+.+.+|+.+.++..+.. ..+|+++| ++++.+|++.+..++|++|++......+........+..+..
T Consensus 192 SeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~F---s~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~ 268 (391)
T KOG2110|consen 192 SEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSF---SPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKV 268 (391)
T ss_pred ccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEE---CCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchh
Confidence 99997 68999999999999986654 56888887 688889999999999999999843311111000000011100
Q ss_pred C-------CCceeEecccccceeeeEEEeCCCC---CEEEEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001391 232 S-------DFKCFKLQDQQHTAVNLFRLVGHEG---SIFRIEWSSCGSKLVSVSDDRSARIWEVRAE 288 (1088)
Q Consensus 232 ~-------~~~~~~~~~~~~~~~~~~~~~gh~~---~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~ 288 (1088)
+ ..+.-..|+ ..+.....+.... .+..+.-.+...++..++.||.+..|.+...
T Consensus 269 sk~~~sylps~V~~~~~---~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 269 SKAATSYLPSQVSSVLD---QSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred hhhhhhhcchhhhhhhh---hccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence 0 011111122 2223333332222 2333443457789999999999999998764
No 200
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.46 E-value=8.5e-11 Score=133.27 Aligned_cols=277 Identities=14% Similarity=0.149 Sum_probs=166.6
Q ss_pred EEEEEeCCeEEEEECCC-Ce--eEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCC
Q 001391 37 FLLAGSGSQVLLYDLEA-GT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNS 112 (1088)
Q Consensus 37 ~laag~d~~I~vwd~~t-g~--~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~ 112 (1088)
|++.+.++.|++||+.+ |+ .+..+.. .+ ..+.++++ |+++ .+.++. .++.|.+|+++...
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~-~~~~l~~s-------pd~~---~lyv~~~~~~~i~~~~~~~~g---- 68 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDV-PG-QVQPMVIS-------PDKR---HLYVGVRPEFRVLSYRIADDG---- 68 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEec-CC-CCccEEEC-------CCCC---EEEEEECCCCcEEEEEECCCC----
Confidence 44545689999999964 43 4455543 22 47888999 7773 444443 47899999997321
Q ss_pred CCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE-cCCcEEEEEcCCC-c---eEEEeccCCceeEEEEeee
Q 001391 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISNS-S---IILEVHSPERCLLYSMKLW 187 (1088)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs-~Dg~V~iWd~~~~-~---~~~~~~~~~~~~~~s~~~~ 187 (1088)
.++.+.... ..+....++|+| ++++|++++ .++.|.+|++.+. . .+..+.... ....+.+
T Consensus 69 --------~l~~~~~~~-~~~~p~~i~~~~---~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~--~~~~~~~- 133 (330)
T PRK11028 69 --------ALTFAAESP-LPGSPTHISTDH---QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLE--GCHSANI- 133 (330)
T ss_pred --------ceEEeeeec-CCCCceEEEECC---CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCC--cccEeEe-
Confidence 122222222 223467899999 999888775 4889999999742 2 222222211 1233333
Q ss_pred cCCCCCcEEE-EEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcC
Q 001391 188 GDNLEALRIA-SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS 266 (1088)
Q Consensus 188 ~~s~~~~~l~-sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp 266 (1088)
+|++.+++ +...++.|.+||+.+...... .......... ......++|+|
T Consensus 134 --~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~--------------------------~~~~~~~~~~-g~~p~~~~~~p 184 (330)
T PRK11028 134 --DPDNRTLWVPCLKEDRIRLFTLSDDGHLVA--------------------------QEPAEVTTVE-GAGPRHMVFHP 184 (330)
T ss_pred --CCCCCEEEEeeCCCCEEEEEEECCCCcccc--------------------------cCCCceecCC-CCCCceEEECC
Confidence 57787775 455679999999972110000 0000011111 23467899999
Q ss_pred CCCEEEEEEC-CCcEEEEEcCCCcccCCCCceeeeceeee----ccCcceEEEEEC--CCEEEEEeC-CCcEEEEcC--C
Q 001391 267 CGSKLVSVSD-DRSARIWEVRAEYWKDSDSIEEVGSSVLY----GHNARVWDCCLT--DSFIITAGE-DCTCRVWGS--D 336 (1088)
Q Consensus 267 ~g~~l~s~s~-Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~----~h~~~I~~v~~~--~~~l~sg~~-Dg~i~vWd~--~ 336 (1088)
++++++++.. +++|.+|++..... ..+.+...... .+......+.++ +.+++++.+ +++|.+|++ +
T Consensus 185 dg~~lyv~~~~~~~v~v~~~~~~~~----~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 185 NQQYAYCVNELNSSVDVWQLKDPHG----EIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred CCCEEEEEecCCCEEEEEEEeCCCC----CEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 9999988766 89999999974210 01222211111 111223357777 567777754 789999998 3
Q ss_pred CceeEEEccc--CCCCeEEEEEcCCCCEEEEEeC-CCCEEEEEcC
Q 001391 337 GKQLKMIKEH--IGRGIWRCLYDSLSSLLVTAGF-DSAIKVHQFQ 378 (1088)
Q Consensus 337 ~~~~~~~~~h--~~~~V~~l~~~~dg~~l~tg~~-Dg~I~iwd~~ 378 (1088)
+..+. +..+ .+...+.+.++|+|++|+++.. +++|.+|+++
T Consensus 261 ~~~~~-~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 261 GSVLS-FEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCeEE-EeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 32221 1111 1123568899999999988775 8999999884
No 201
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.45 E-value=1.3e-10 Score=131.88 Aligned_cols=263 Identities=15% Similarity=0.182 Sum_probs=163.2
Q ss_pred CCCCCceEEecCC-Cc--------eeeeeEEEEEeccCCCCCCCCEEEEEe--CCeEEEEECC-CCee--EEEEeeeCCc
Q 001391 1 MGKKDLSEWRLDV-GQ--------YLGEISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLE-AGTL--IRPFQVFHGI 66 (1088)
Q Consensus 1 ~~d~~i~iWdl~~-g~--------~~~~V~~v~fs~~pd~~~~~~~laag~--d~~I~vwd~~-tg~~--~~~~~~~~~~ 66 (1088)
.+|+.|++||+.+ ++ ..+....++++ |+ +++|+++. ++.|.+|++. +|+. +..... ..
T Consensus 9 ~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~s--pd----~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~--~~ 80 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVIS--PD----KRHLYVGVRPEFRVLSYRIADDGALTFAAESPL--PG 80 (330)
T ss_pred CCCCCEEEEEECCCCceeeeeEEecCCCCccEEEC--CC----CCEEEEEECCCCcEEEEEECCCCceEEeeeecC--CC
Confidence 3688999999964 33 22446789999 99 88887765 4899999986 4443 222222 22
Q ss_pred ceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~ 145 (1088)
....++|+ |+++ .++++ .+++.|.+|+++.... ..+.+..+.+ .....+++++|
T Consensus 81 ~p~~i~~~-------~~g~---~l~v~~~~~~~v~v~~~~~~g~-----------~~~~~~~~~~-~~~~~~~~~~p--- 135 (330)
T PRK11028 81 SPTHISTD-------HQGR---FLFSASYNANCVSVSPLDKDGI-----------PVAPIQIIEG-LEGCHSANIDP--- 135 (330)
T ss_pred CceEEEEC-------CCCC---EEEEEEcCCCeEEEEEECCCCC-----------CCCceeeccC-CCcccEeEeCC---
Confidence 46789998 7773 44444 3489999999974320 0122222222 23467789999
Q ss_pred CCCEEEEE-EcCCcEEEEEcCCCceEEE-----eccCCceeEEEEeeecCCCCCcEEEEEec-CCeEEEEEeccCccccC
Q 001391 146 GNRSLAIG-CSDNSIRVWDISNSSIILE-----VHSPERCLLYSMKLWGDNLEALRIASGTI-YNEIIVWKVDWEHVAPL 218 (1088)
Q Consensus 146 d~~~lasg-s~Dg~V~iWd~~~~~~~~~-----~~~~~~~~~~s~~~~~~s~~~~~l~sg~~-dg~I~vwd~~~~~~~~~ 218 (1088)
++++++++ ..++.|.+||+.+...+.. ...+.......+.+ ++++.++++... +++|.+|++....
T Consensus 136 ~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~---~pdg~~lyv~~~~~~~v~v~~~~~~~---- 208 (330)
T PRK11028 136 DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVF---HPNQQYAYCVNELNSSVDVWQLKDPH---- 208 (330)
T ss_pred CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEE---CCCCCEEEEEecCCCEEEEEEEeCCC----
Confidence 99877554 5579999999976332211 11111222334554 588888887766 8999999997110
Q ss_pred CCCCCCccCCCCCCCCceeEecccccceeeeEEEeC------CCCCEEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCccc
Q 001391 219 LNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG------HEGSIFRIEWSSCGSKLVSVSD-DRSARIWEVRAEYWK 291 (1088)
Q Consensus 219 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g------h~~~V~~v~~sp~g~~l~s~s~-Dg~v~iWd~~~~~~~ 291 (1088)
+ ..+.+..+.. +......+.++|++++++++.. ++.|.+|++.....
T Consensus 209 ----------------~---------~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~- 262 (330)
T PRK11028 209 ----------------G---------EIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGS- 262 (330)
T ss_pred ----------------C---------CEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCC-
Confidence 0 1112222211 1223456899999999888754 78999999965321
Q ss_pred CCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeC-CCcEEEEcC
Q 001391 292 DSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE-DCTCRVWGS 335 (1088)
Q Consensus 292 ~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~-Dg~i~vWd~ 335 (1088)
..+.++. ...+ ...+.+.++ +.+|+++.. +++|.+|++
T Consensus 263 ---~~~~~~~-~~~~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 263 ---VLSFEGH-QPTE--TQPRGFNIDHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred ---eEEEeEE-Eecc--ccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 0122220 1111 234567777 677776665 899999987
No 202
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.45 E-value=2.3e-13 Score=145.29 Aligned_cols=265 Identities=16% Similarity=0.204 Sum_probs=202.1
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECC
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd 96 (1088)
||. -+.|+ .+ |++|+.|. -|.|--+|+.+++++..+.+-+ .|..+.|. .+. .++|++..
T Consensus 131 GPY-~~~yt--rn----GrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E--tv~Dv~~L-------Hne----q~~AVAQK 190 (545)
T KOG1272|consen 131 GPY-HLDYT--RN----GRHLLLGGRKGHLAAFDWVTKKLHFEINVME--TVRDVTFL-------HNE----QFFAVAQK 190 (545)
T ss_pred CCe-eeeec--CC----ccEEEecCCccceeeeecccceeeeeeehhh--hhhhhhhh-------cch----HHHHhhhh
Confidence 444 46777 66 88888888 5999999999999999998755 59999998 553 79999999
Q ss_pred CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccC
Q 001391 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP 176 (1088)
Q Consensus 97 ~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~ 176 (1088)
+.+.|||-. +..++.++.| ..|..+.|.| .--+|++++..|.++.-|+.+|+.+..+...
T Consensus 191 ~y~yvYD~~----------------GtElHClk~~-~~v~rLeFLP---yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~ 250 (545)
T KOG1272|consen 191 KYVYVYDNN----------------GTELHCLKRH-IRVARLEFLP---YHFLLVAASEAGFLKYQDVSTGKLVASIRTG 250 (545)
T ss_pred ceEEEecCC----------------CcEEeehhhc-Cchhhhcccc---hhheeeecccCCceEEEeechhhhhHHHHcc
Confidence 999999965 4556666655 4589999999 8889999999999999999999998877644
Q ss_pred CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCC
Q 001391 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (1088)
Q Consensus 177 ~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 256 (1088)
.+. +..| ..+|-...+-.|...|+|.+|... ...++..+..|.
T Consensus 251 ~G~-~~vm---~qNP~NaVih~GhsnGtVSlWSP~---------------------------------skePLvKiLcH~ 293 (545)
T KOG1272|consen 251 AGR-TDVM---KQNPYNAVIHLGHSNGTVSLWSPN---------------------------------SKEPLVKILCHR 293 (545)
T ss_pred CCc-cchh---hcCCccceEEEcCCCceEEecCCC---------------------------------CcchHHHHHhcC
Confidence 332 1122 236777788899999999999998 778888889999
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcC-
Q 001391 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS- 335 (1088)
Q Consensus 257 ~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~- 335 (1088)
++|.+|++.++|.+++|++.|+.++|||++.-.. +. +... .-....++++..-++..+....+.+|.-
T Consensus 294 g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q--------l~--t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~d~ 362 (545)
T KOG1272|consen 294 GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ--------LH--TYRT-PHPASNLSLSQKGLLALSYGDHVQIWKDA 362 (545)
T ss_pred CCcceEEECCCCcEEeecccccceeEeeeccccc--------cc--eeec-CCCccccccccccceeeecCCeeeeehhh
Confidence 9999999999999999999999999999998422 21 2222 3345678888655566666678999975
Q ss_pred -CCc--eeEEEcccC-CCCeEEEEEcCCCCEEEEEeCCC
Q 001391 336 -DGK--QLKMIKEHI-GRGIWRCLYDSLSSLLVTAGFDS 370 (1088)
Q Consensus 336 -~~~--~~~~~~~h~-~~~V~~l~~~~dg~~l~tg~~Dg 370 (1088)
.+. .-..+-.|. +.+|..+.|.|-...|-.|..-|
T Consensus 363 ~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 363 LKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred hcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 322 111122221 23689999999776666665555
No 203
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1.8e-12 Score=139.52 Aligned_cols=312 Identities=15% Similarity=0.143 Sum_probs=211.8
Q ss_pred ccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEe
Q 001391 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (1088)
Q Consensus 121 ~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~ 200 (1088)
++.+...|.+|.+.|..|.|+. .|..|++|+.|..|.+||...+.....+...+...++...|.+++ +...+++.+
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~---~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s-~d~ti~~~s 206 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQ---RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFS-GDRTIVTSS 206 (559)
T ss_pred HhhhhhcccCCCCccceeeecc---cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCC-CCcCceecc
Confidence 4667788999999999999999 999999999999999999999999888887777778888888775 456789999
Q ss_pred cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCC-EEEEEECCCc
Q 001391 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRS 279 (1088)
Q Consensus 201 ~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~-~l~s~s~Dg~ 279 (1088)
.||.+++=.+.... .......+..|.+.|..++.-|+.. .|.|++.|+.
T Consensus 207 ~dgqvr~s~i~~t~------------------------------~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~ 256 (559)
T KOG1334|consen 207 RDGQVRVSEILETG------------------------------YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAV 256 (559)
T ss_pred ccCceeeeeecccc------------------------------ceecceecccccCccceeeecCCCCCcccccccccc
Confidence 99999987765110 1222445668999999999999764 5899999999
Q ss_pred EEEEEcCCCcccCCCCceeeeceeeeccCc---ceEEEEEC---CCEEEEEeCCCcEEEEcCC---C----ceeEEEccc
Q 001391 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNA---RVWDCCLT---DSFIITAGEDCTCRVWGSD---G----KQLKMIKEH 346 (1088)
Q Consensus 280 v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~---~I~~v~~~---~~~l~sg~~Dg~i~vWd~~---~----~~~~~~~~h 346 (1088)
+.-.|++.... ...+. ....+.. ...+++.. ...+++|+.|-.+|+||.. . ..+.++..|
T Consensus 257 v~~~Dlr~~~p-----a~~~~--cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~ 329 (559)
T KOG1334|consen 257 VFHIDLRQDVP-----AEKFV--CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPH 329 (559)
T ss_pred eeeeeeccCCc-----cceee--eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCc
Confidence 99999987644 12221 2222333 34566665 4689999999999999972 1 123333322
Q ss_pred C-----CCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeee-CCCccceeeccCC--
Q 001391 347 I-----GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKI-PNFSEQIRLTDSK-- 418 (1088)
Q Consensus 347 ~-----~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-- 418 (1088)
+ .-.|++++|+.++.-|.+.-.|-.|.++.-....-.. ...... ....+.+ +.+|
T Consensus 330 hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~---------------p~~~s~~~~~~k~v--YKGHrN 392 (559)
T KOG1334|consen 330 HLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE---------------PDPSSPREQYVKRV--YKGHRN 392 (559)
T ss_pred cccccCcccceeEEecCCccceeeeecccceEEeccccccCCC---------------CCCCcchhhccchh--hccccc
Confidence 2 1259999999777666666677778888542211000 000000 0000111 2333
Q ss_pred CCceEEEEecc-CCeEEEE-ecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCE
Q 001391 419 SEYVRCLHLTS-EDTLYIA-TNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNM 496 (1088)
Q Consensus 419 ~~~V~~l~~s~-~~~ll~~-t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I 496 (1088)
...|+++.|.. ...++++ +..|.|+ +|+..+.+....+.+... -|.|+.-+ |...+||+.+-|..|
T Consensus 393 ~~TVKgVNFfGPrsEyVvSGSDCGhIF---iW~K~t~eii~~MegDr~-VVNCLEpH--------P~~PvLAsSGid~DV 460 (559)
T KOG1334|consen 393 SRTVKGVNFFGPRSEYVVSGSDCGHIF---IWDKKTGEIIRFMEGDRH-VVNCLEPH--------PHLPVLASSGIDHDV 460 (559)
T ss_pred ccccceeeeccCccceEEecCccceEE---EEecchhHHHHHhhcccc-eEeccCCC--------CCCchhhccCCccce
Confidence 34588888765 3455554 5568899 555554443334455433 56665543 345899999999999
Q ss_pred EEEEEc
Q 001391 497 TIVRVV 502 (1088)
Q Consensus 497 ~iw~~~ 502 (1088)
+||...
T Consensus 461 KIWTP~ 466 (559)
T KOG1334|consen 461 KIWTPL 466 (559)
T ss_pred eeecCC
Confidence 999763
No 204
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.42 E-value=4.2e-11 Score=141.95 Aligned_cols=268 Identities=16% Similarity=0.166 Sum_probs=172.6
Q ss_pred EECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeec
Q 001391 49 YDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL 128 (1088)
Q Consensus 49 wd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l 128 (1088)
|+. .|.+++.+..|.. .|..++.++ +++. ..+.++.||+|++|+...-..... ..+...++
T Consensus 1034 W~p-~G~lVAhL~Ehs~-~v~k~a~s~------~~~s---~FvsgS~DGtVKvW~~~k~~~~~~--------s~rS~lty 1094 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSS-AVIKLAVSS------EHTS---LFVSGSDDGTVKVWNLRKLEGEGG--------SARSELTY 1094 (1431)
T ss_pred CCc-cceEeehhhhccc-cccceeecC------CCCc---eEEEecCCceEEEeeehhhhcCcc--------eeeeeEEE
Confidence 664 4789999998887 466888874 3431 444445599999999885331111 12333344
Q ss_pred cCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC--Cce-----EEEeccCCceeEEEEeeecCCCCCcEEEEEec
Q 001391 129 PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN--SSI-----ILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (1088)
Q Consensus 129 ~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~--~~~-----~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~ 201 (1088)
......+.++.+.+ .++.+|+++.||.|++.+++. ... ...........+.+|...........|+.++.
T Consensus 1095 s~~~sr~~~vt~~~---~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~ 1171 (1431)
T KOG1240|consen 1095 SPEGSRVEKVTMCG---NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATD 1171 (1431)
T ss_pred eccCCceEEEEecc---CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEe
Confidence 44567899999999 999999999999999999875 211 11111222222334432222222247888999
Q ss_pred CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEE--EeCCCCCEEEEEEcCCCCEEEEEECCCc
Q 001391 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR--LVGHEGSIFRIEWSSCGSKLVSVSDDRS 279 (1088)
Q Consensus 202 dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~gh~~~V~~v~~sp~g~~l~s~s~Dg~ 279 (1088)
.+.|..||.+ ......+ ..-..|.|++++.+|.+.++++|+..|.
T Consensus 1172 ~~~iv~~D~r---------------------------------~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~ 1218 (1431)
T KOG1240|consen 1172 LSRIVSWDTR---------------------------------MRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQ 1218 (1431)
T ss_pred ccceEEecch---------------------------------hhhhHHhhhcCccccceeEEEecCCceEEEEecCCce
Confidence 9999999998 2222221 2233578999999999999999999999
Q ss_pred EEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---C--CEEEEEeC--CCcEEEEcC-CCceeEEEcccCC---
Q 001391 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---D--SFIITAGE--DCTCRVWGS-DGKQLKMIKEHIG--- 348 (1088)
Q Consensus 280 v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~--~~l~sg~~--Dg~i~vWd~-~~~~~~~~~~h~~--- 348 (1088)
+.+||++-+ .++.. -..++..+|..+..+ + ...++++. .+.+-+|++ +|.+-..+-...+
T Consensus 1219 l~lWDLRF~--------~~i~s-w~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ 1289 (1431)
T KOG1240|consen 1219 LVLWDLRFR--------VPILS-WEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPI 1289 (1431)
T ss_pred EEEEEeecC--------ceeec-ccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcc
Confidence 999999875 23321 333444666666654 3 56665554 678999999 5544333322100
Q ss_pred ---------------CCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCC
Q 001391 349 ---------------RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (1088)
Q Consensus 349 ---------------~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~ 380 (1088)
-+.....+...+..+.+|+.|..|+.||....
T Consensus 1290 ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1290 LSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred hhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 01122333344568999999999999999653
No 205
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=3.3e-12 Score=138.77 Aligned_cols=186 Identities=16% Similarity=0.173 Sum_probs=142.6
Q ss_pred ccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEe
Q 001391 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (1088)
Q Consensus 121 ~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~ 200 (1088)
++.+.+.|.||++-|+|++|+. +|.+|++|+.|-.+.|||....+.+..+.......++++.|++.. +..+|++|.
T Consensus 39 rL~lE~eL~GH~GCVN~LeWn~---dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t-nnriv~sgA 114 (758)
T KOG1310|consen 39 RLDLEAELTGHTGCVNCLEWNA---DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT-NNRIVLSGA 114 (758)
T ss_pred hcchhhhhccccceecceeecC---CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccC-CCeEEEecc
Confidence 3566778999999999999999 999999999999999999999999999988888889999998875 456899999
Q ss_pred cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCC-CEEEEEECCCc
Q 001391 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRS 279 (1088)
Q Consensus 201 ~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g-~~l~s~s~Dg~ 279 (1088)
.|..|+++|+...+-.+...+ .....+.+..|...|..++-.|++ ..+-++++||+
T Consensus 115 gDk~i~lfdl~~~~~~~~d~~-----------------------~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt 171 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMDHG-----------------------MEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT 171 (758)
T ss_pred CcceEEEEecccccccccccC-----------------------ccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc
Confidence 999999999983221111110 234455667899999999999998 67899999999
Q ss_pred EEEEEcCCCcccCCC--CceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcC
Q 001391 280 ARIWEVRAEYWKDSD--SIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 280 v~iWd~~~~~~~~~~--~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~ 335 (1088)
++-+|++......+. ....+. ...+.--...|+..+ +.+|+.|+.|-..++||.
T Consensus 172 irQyDiREph~c~p~~~~~~~l~--ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 172 IRQYDIREPHVCNPDEDCPSILV--NYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred eeeecccCCccCCccccccHHHH--HhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 999999874321110 011110 111111234567776 689999999999999995
No 206
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.41 E-value=7.9e-10 Score=115.98 Aligned_cols=233 Identities=13% Similarity=0.181 Sum_probs=163.9
Q ss_pred ceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d 146 (1088)
.+..+.|. .|. ..|+.+.....++++.+.-. + ......-.-.|--+-|+
T Consensus 7 ti~~~~~N-------qd~----~~lsvGs~~Gyk~~~~~~~~--------------k-~~~~~~~~~~IvEmLFS----- 55 (391)
T KOG2110|consen 7 TINFIGFN-------QDS----TLLSVGSKDGYKIFSCSPFE--------------K-CFSKDTEGVSIVEMLFS----- 55 (391)
T ss_pred ceeeeeec-------cce----eEEEccCCCceeEEecCchH--------------H-hhcccCCCeEEEEeecc-----
Confidence 35556666 554 56666666778888877422 1 11111122345555554
Q ss_pred CCEEEEEEcCC--cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCC
Q 001391 147 NRSLAIGCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEG 224 (1088)
Q Consensus 147 ~~~lasgs~Dg--~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~ 224 (1088)
..++|..+.+. .+++.++..+..+..+.-+.. +.++++ +.+.|++.-.+. |+|+|+.
T Consensus 56 SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~--IL~Vrm-----Nr~RLvV~Lee~-IyIydI~------------- 114 (391)
T KOG2110|consen 56 SSLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTS--ILAVRM-----NRKRLVVCLEES-IYIYDIK------------- 114 (391)
T ss_pred cceeEEEecCCCceEEEEEcccCceEEEEecCCc--eEEEEE-----ccceEEEEEccc-EEEEecc-------------
Confidence 36666666544 489999988888877765543 445554 345566554444 9999998
Q ss_pred ccCCCCCCCCceeEecccccceeeeEEEe---CCCCCEEEEEEcCCCCEEEE--EECCCcEEEEEcCCCcccCCCCceee
Q 001391 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLV---GHEGSIFRIEWSSCGSKLVS--VSDDRSARIWEVRAEYWKDSDSIEEV 299 (1088)
Q Consensus 225 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~---gh~~~V~~v~~sp~g~~l~s--~s~Dg~v~iWd~~~~~~~~~~~~~~i 299 (1088)
..+.++++. .+...+.++++++.+.+++- ....|.|.+||..+. +.+
T Consensus 115 --------------------~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl--------~~v 166 (391)
T KOG2110|consen 115 --------------------DMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL--------QPV 166 (391)
T ss_pred --------------------cceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc--------eee
Confidence 455555443 35556777777777778775 233589999999884 445
Q ss_pred eceeeeccCcceEEEEEC--CCEEEEEeCCCc-EEEEcC-CCceeEEEcccCC-CCeEEEEEcCCCCEEEEEeCCCCEEE
Q 001391 300 GSSVLYGHNARVWDCCLT--DSFIITAGEDCT-CRVWGS-DGKQLKMIKEHIG-RGIWRCLYDSLSSLLVTAGFDSAIKV 374 (1088)
Q Consensus 300 ~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~-i~vWd~-~~~~~~~~~~h~~-~~V~~l~~~~dg~~l~tg~~Dg~I~i 374 (1088)
. .+..|.+.+.+++|+ |.+|+|+++.|+ |||+.+ +|+.+.+|+.-.. -.|.+++|+|++++|++.+..++|.+
T Consensus 167 ~--~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHi 244 (391)
T KOG2110|consen 167 N--TINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHI 244 (391)
T ss_pred e--EEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEE
Confidence 4 677999999999998 899999999998 599999 8999998864322 24889999999999999999999999
Q ss_pred EEcCCCC
Q 001391 375 HQFQAFL 381 (1088)
Q Consensus 375 wd~~~~~ 381 (1088)
+.++...
T Consensus 245 FKL~~~~ 251 (391)
T KOG2110|consen 245 FKLEKVS 251 (391)
T ss_pred EEecccc
Confidence 9996543
No 207
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.38 E-value=2.3e-11 Score=132.00 Aligned_cols=268 Identities=15% Similarity=0.159 Sum_probs=177.1
Q ss_pred CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeee-ceeeeccCcceEEEEEC----CCEEEEEeCCC
Q 001391 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG-SSVLYGHNARVWDCCLT----DSFIITAGEDC 328 (1088)
Q Consensus 254 gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~-~~~~~~h~~~I~~v~~~----~~~l~sg~~Dg 328 (1088)
.|...|.++.|+.....+.+++++..+.-||+.+... +.+. +-.+......+...... ...++.++.||
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~------~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DG 85 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV------EVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDG 85 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhh------hhhhCCcccCCccccccccccCCCCCcceEEEEcCCc
Confidence 5677788999998887777777666666667665432 1110 00111000001111111 25788899999
Q ss_pred cEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCC
Q 001391 329 TCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNF 408 (1088)
Q Consensus 329 ~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (1088)
.+.+-+-.++..+.+..|.+ .|.+-.|+|||.-|+|+|.||.|++|.-.+-...+
T Consensus 86 kf~il~k~~rVE~sv~AH~~-A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRSt------------------------ 140 (737)
T KOG1524|consen 86 RFVILNKSARVERSISAHAA-AISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRST------------------------ 140 (737)
T ss_pred eEEEecccchhhhhhhhhhh-hhhhcccCCCCceeeeecCCceEEEEeccchHHHH------------------------
Confidence 99999999999999999999 79999999999999999999999999975421111
Q ss_pred ccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEecc-CCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeE
Q 001391 409 SEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCD-MDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWV 487 (1088)
Q Consensus 409 ~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~l 487 (1088)
+.....+|+|++|.|+..-++-++.++++.-.+.. ....+| ..+++-|.++++.+. .+++
T Consensus 141 ------l~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~W-----kAHDGiiL~~~W~~~--------s~lI 201 (737)
T KOG1524|consen 141 ------VVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRW-----RAHDGLVLSLSWSTQ--------SNII 201 (737)
T ss_pred ------HhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEE-----eccCcEEEEeecCcc--------ccce
Confidence 11223579999999998777778888876433322 223345 344677888887554 4899
Q ss_pred EEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCccc
Q 001391 488 ALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTN 567 (1088)
Q Consensus 488 a~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 567 (1088)
++|++|-..++||-....+-. ...++..+.+ .++.|+ +.++.++. .+++ +
T Consensus 202 ~sgGED~kfKvWD~~G~~Lf~--------S~~~ey~ITS--va~npd-~~~~v~S~-nt~R---~--------------- 251 (737)
T KOG1524|consen 202 ASGGEDFRFKIWDAQGANLFT--------SAAEEYAITS--VAFNPE-KDYLLWSY-NTAR---F--------------- 251 (737)
T ss_pred eecCCceeEEeecccCccccc--------CChhccceee--eeeccc-cceeeeee-eeee---e---------------
Confidence 999999999999976533211 1112222333 356676 33333322 2223 1
Q ss_pred ceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeC
Q 001391 568 NVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPL 609 (1088)
Q Consensus 568 ~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~ 609 (1088)
.....+.|..++||+||..+++|...|.+.+=.+
T Consensus 252 --------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 252 --------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred --------cCCCccceEEEEEcCCCceeeccccCceEEEeee
Confidence 1223567999999999999999999999775443
No 208
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.35 E-value=7.9e-10 Score=113.80 Aligned_cols=237 Identities=13% Similarity=0.157 Sum_probs=163.3
Q ss_pred CCceEEecCCCc------eeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECC-CCeeEEEEeeeC-CcceEEEEecc
Q 001391 4 KDLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLE-AGTLIRPFQVFH-GIRLHGISCNF 75 (1088)
Q Consensus 4 ~~i~iWdl~~g~------~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~-tg~~~~~~~~~~-~~~V~~i~~s~ 75 (1088)
+.|.|||=...+ +..+|.+|.+. + ..|++.-...|.||... ..+.++.+.... ..+..+++-+
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~--r------~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~- 145 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLR--R------DRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPT- 145 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEc--C------CeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCC-
Confidence 569999955554 56889999999 4 47888888899999987 557777766422 2223333322
Q ss_pred cccccCCCccceeeEEEEEC--CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEE
Q 001391 76 INCTEGSVSTRVTFEVALFG--EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG 153 (1088)
Q Consensus 76 ~~~~~~~d~~~~~~~la~~g--d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg 153 (1088)
.+. .+||.=| -|.|+|-++.... ...-..++.|...|.|++++- +|..+||+
T Consensus 146 ------~~k----~~LafPg~k~GqvQi~dL~~~~-------------~~~p~~I~AH~s~Iacv~Ln~---~Gt~vATa 199 (346)
T KOG2111|consen 146 ------SNK----SLLAFPGFKTGQVQIVDLASTK-------------PNAPSIINAHDSDIACVALNL---QGTLVATA 199 (346)
T ss_pred ------CCc----eEEEcCCCccceEEEEEhhhcC-------------cCCceEEEcccCceeEEEEcC---CccEEEEe
Confidence 332 6677655 5899999998533 112245679999999999999 99999999
Q ss_pred EcCCc-EEEEEcCCCceEEEeccC-CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCC
Q 001391 154 CSDNS-IRVWDISNSSIILEVHSP-ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSS 231 (1088)
Q Consensus 154 s~Dg~-V~iWd~~~~~~~~~~~~~-~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~ 231 (1088)
|..|+ |||||..+|+.+.++..+ ....+|+++| +|+..+||+.+.-|++.||.++..+...... ..
T Consensus 200 StkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF---Sp~~s~LavsSdKgTlHiF~l~~~~~~~~~~---------SS 267 (346)
T KOG2111|consen 200 STKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAF---SPNSSWLAVSSDKGTLHIFSLRDTENTEDES---------SS 267 (346)
T ss_pred ccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEe---CCCccEEEEEcCCCeEEEEEeecCCCCcccc---------cc
Confidence 99998 799999999999998744 5678999988 8999999999999999999998322111100 00
Q ss_pred CCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001391 232 SDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (1088)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~ 287 (1088)
....+..+...-.+...+..+.-..+...-++|-.+...++..+.||+-+-+.+..
T Consensus 268 l~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~ 323 (346)
T KOG2111|consen 268 LSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFDP 323 (346)
T ss_pred ccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEecc
Confidence 00001111111112233344444466778888888767777777888776555443
No 209
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.33 E-value=4.6e-10 Score=130.31 Aligned_cols=282 Identities=12% Similarity=0.106 Sum_probs=175.5
Q ss_pred CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce--EEE--
Q 001391 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI--ILE-- 172 (1088)
Q Consensus 97 ~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~--~~~-- 172 (1088)
..+.||++..+. .+...+ .-...|.+++|+|. +..+||.|..+|.|.+||+..+.. ...
T Consensus 222 ~~~~vW~~~~p~--------------~Pe~~~-~~~s~v~~~~f~p~--~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls 284 (555)
T KOG1587|consen 222 GVLLVWSLKNPN--------------TPELVL-ESPSEVTCLKFCPF--DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS 284 (555)
T ss_pred ceEEEEecCCCC--------------CceEEE-ecCCceeEEEeccC--CcceEEeeccCceEEEEEccCCCCCCCcccc
Confidence 479999998643 122222 23478999999993 667889999999999999987655 222
Q ss_pred -eccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEE
Q 001391 173 -VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (1088)
Q Consensus 173 -~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1088)
........++.+.+... +.+.-+++++.||.|..|+.+--.. +.. +.. .. .......
T Consensus 285 ~~~~sh~~~v~~vvW~~~-~~~~~f~s~ssDG~i~~W~~~~l~~-P~e---------~~~----------~~-~~~~~~~ 342 (555)
T KOG1587|consen 285 ALEVSHSEPVTAVVWLQN-EHNTEFFSLSSDGSICSWDTDMLSL-PVE---------GLL----------LE-SKKHKGQ 342 (555)
T ss_pred cccccCCcCeEEEEEecc-CCCCceEEEecCCcEeeeecccccc-chh---------hcc----------cc-ccccccc
Confidence 22223334445544443 3336789999999999998771100 000 000 00 0000000
Q ss_pred EeCCCCCEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCC
Q 001391 252 LVGHEGSIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGED 327 (1088)
Q Consensus 252 ~~gh~~~V~~v~~sp~-g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~D 327 (1088)
-..-...+++++|.+. -..++.|+++|.|.--+-...+.......+.. .....|.+.|.++.++ ...+++++ |
T Consensus 343 ~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~--~~~~~h~g~v~~v~~nPF~~k~fls~g-D 419 (555)
T KOG1587|consen 343 QSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGH--STFITHIGPVYAVSRNPFYPKNFLSVG-D 419 (555)
T ss_pred ccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccc--ccccccCcceEeeecCCCccceeeeec-c
Confidence 0122346888999884 46789999999987644333222000000111 2566788999999988 45666666 9
Q ss_pred CcEEEEcC--CCceeEEEcccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEee
Q 001391 328 CTCRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIK 404 (1088)
Q Consensus 328 g~i~vWd~--~~~~~~~~~~h~~~~V~~l~~~~dg~-~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1088)
.++++|.. ...++..+..+.. .|++++|+|-.. .++++..||.+.+||+...... .+.+.
T Consensus 420 W~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~---------------Pv~s~- 482 (555)
T KOG1587|consen 420 WTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE---------------PVLSQ- 482 (555)
T ss_pred ceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhccccC---------------Ccccc-
Confidence 99999997 4567777777776 599999999764 7788888999999999432111 11110
Q ss_pred eCCCccceeeccCCCCceEEEEeccCCeEEEE-ecCCeEEEEEec
Q 001391 405 IPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA-TNHGYLYHTKLC 448 (1088)
Q Consensus 405 ~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~-t~~g~i~~~~~~ 448 (1088)
.......+.+.+++.+++++. ...|.++.+++.
T Consensus 483 -----------~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 483 -----------KVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred -----------cccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 011234567778887766655 566777766664
No 210
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=3.7e-11 Score=128.16 Aligned_cols=195 Identities=16% Similarity=0.142 Sum_probs=140.2
Q ss_pred EEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEE
Q 001391 21 SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRV 99 (1088)
Q Consensus 21 ~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v 99 (1088)
.+|+|+ ++ +..|++|. ||++|||++.+-..+.....|++ .|.+++|| ||| .+|++-+....
T Consensus 148 k~vaf~--~~----gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~-eV~DL~FS-------~dg----k~lasig~d~~ 209 (398)
T KOG0771|consen 148 KVVAFN--GD----GSKLATGGTDGTLRVWEWPSMLTILEEIAHHA-EVKDLDFS-------PDG----KFLASIGADSA 209 (398)
T ss_pred eEEEEc--CC----CCEeeeccccceEEEEecCcchhhhhhHhhcC-ccccceeC-------CCC----cEEEEecCCce
Confidence 689999 87 89999976 89999999888887777777777 69999999 898 56666553399
Q ss_pred EEEEeccCCCCCCCCCCccccccceeeec--cCCCCcEEEEEEecccCCC-----CEEEEEEcCCcEEEEEcCCCceEE-
Q 001391 100 KLFELNFELSPNSQYQPETCVNLSLVQSL--PRLSHWVFDVCFLKVCNGN-----RSLAIGCSDNSIRVWDISNSSIIL- 171 (1088)
Q Consensus 100 ~iw~l~~~~~~~~~~~~~~~~~~~~~~~l--~~h~~~I~~v~f~p~~~d~-----~~lasgs~Dg~V~iWd~~~~~~~~- 171 (1088)
+||+.+... .++.. ..-+.....+.|+. |+ .+.+....-+.|+.|++.....-.
T Consensus 210 ~VW~~~~g~---------------~~a~~t~~~k~~~~~~cRF~~---d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~ 271 (398)
T KOG0771|consen 210 RVWSVNTGA---------------ALARKTPFSKDEMFSSCRFSV---DNAQETLRLAASQFPGGGVRLCDISLWSGSNF 271 (398)
T ss_pred EEEEeccCc---------------hhhhcCCcccchhhhhceecc---cCCCceEEEEEecCCCCceeEEEeeeeccccc
Confidence 999998642 11111 12234466778877 44 233334456677777765432211
Q ss_pred -Eec--cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee
Q 001391 172 -EVH--SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1088)
Q Consensus 172 -~~~--~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 248 (1088)
... ......+.+++. +++|.++|.|+.||.|.|++.. +.+.
T Consensus 272 l~~~~~~~~~~siSsl~V---S~dGkf~AlGT~dGsVai~~~~---------------------------------~lq~ 315 (398)
T KOG0771|consen 272 LRLRKKIKRFKSISSLAV---SDDGKFLALGTMDGSVAIYDAK---------------------------------SLQR 315 (398)
T ss_pred cchhhhhhccCcceeEEE---cCCCcEEEEeccCCcEEEEEec---------------------------------eeee
Confidence 111 111223456665 7899999999999999999987 4444
Q ss_pred eEEE-eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001391 249 LFRL-VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (1088)
Q Consensus 249 ~~~~-~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~ 287 (1088)
++-. +.|...|+.+.|+|+.+++++.+.|..+.+..+.-
T Consensus 316 ~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 316 LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 4433 47999999999999999999999999999888765
No 211
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=1.7e-08 Score=114.63 Aligned_cols=491 Identities=12% Similarity=0.072 Sum_probs=250.7
Q ss_pred eEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEeccccccc---CCCccceeeEEEEEC-
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTE---GSVSTRVTFEVALFG- 95 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~---~~d~~~~~~~la~~g- 95 (1088)
-.+++++ |. .++|-|+...|.|-|..+-+.+..+..|.. .|..+.|.|..... .|.. .+.++|+++
T Consensus 18 ~~A~Dw~--~~-----GLiAygshslV~VVDs~s~q~iqsie~h~s-~V~~VrWap~~~p~~llS~~~--~~lliAsaD~ 87 (1062)
T KOG1912|consen 18 RNAADWS--PS-----GLIAYGSHSLVSVVDSRSLQLIQSIELHQS-AVTSVRWAPAPSPRDLLSPSS--SQLLIASADI 87 (1062)
T ss_pred ccccccC--cc-----ceEEEecCceEEEEehhhhhhhhccccCcc-ceeEEEeccCCCchhccCccc--cceeEEeccc
Confidence 4567777 64 689999999999999999999999998776 69999999874321 1111 125556655
Q ss_pred CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCC-CEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 96 d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~-~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.|.|.+||.... ..+..+..|.+.|.+++|-|...+. ..|+.-....++.+|+..+|+...+..
T Consensus 88 ~GrIil~d~~~~---------------s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ 152 (1062)
T KOG1912|consen 88 SGRIILVDFVLA---------------SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD 152 (1062)
T ss_pred cCcEEEEEehhh---------------hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc
Confidence 699999998853 3445566788999999999855455 456666678899999999999887765
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeee----E
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL----F 250 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~----~ 250 (1088)
.... ++.+..+-++++ ..+..-+..|.+.+-+.- +... ++ ...+.++|-......... .
T Consensus 153 ys~~-iLs~f~~DPfd~--rh~~~l~s~g~vl~~~~l-----~~se------p~---~pgk~~qI~sd~Sdl~~lere~a 215 (1062)
T KOG1912|consen 153 YSHE-ILSCFRVDPFDS--RHFCVLGSKGFVLSCKDL-----GLSE------PD---VPGKEFQITSDHSDLAHLERETA 215 (1062)
T ss_pred cCCc-ceeeeeeCCCCc--ceEEEEccCceEEEEecc-----CCCC------CC---CCceeEEEecCccchhhhhhhhh
Confidence 4332 344455544443 334444445666665543 0000 00 001111111000000000 0
Q ss_pred EEeCCCCC---------EEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CC
Q 001391 251 RLVGHEGS---------IFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS 319 (1088)
Q Consensus 251 ~~~gh~~~---------V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~ 319 (1088)
.-..++.. ....+|+|.-+.++-...-+.+.++|++-.. ++....+......+.++--. ..
T Consensus 216 t~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~--------~l~vvpier~~akfv~vlP~~~rd 287 (1062)
T KOG1912|consen 216 TGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYEC--------CLAVVPIERGGAKFVDVLPDPRRD 287 (1062)
T ss_pred ccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhc--------eeEEEEeccCCcceeEeccCCCcc
Confidence 00001100 1124678876666666667789999987642 33211222222223333222 36
Q ss_pred EEEEEeCCCcEEEEcCCC-----------------ceeEEEcccCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEEcCCCC
Q 001391 320 FIITAGEDCTCRVWGSDG-----------------KQLKMIKEHIGRGIWRCLYDSL-SSLLVTAGFDSAIKVHQFQAFL 381 (1088)
Q Consensus 320 ~l~sg~~Dg~i~vWd~~~-----------------~~~~~~~~h~~~~V~~l~~~~d-g~~l~tg~~Dg~I~iwd~~~~~ 381 (1088)
.++..-.||.+.+|-... .+...+..-..-.+......|. ...++.--.+|...+|.+....
T Consensus 288 ~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~r 367 (1062)
T KOG1912|consen 288 ALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGR 367 (1062)
T ss_pred eEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCC
Confidence 788999999999997621 1111111111101122222333 2334444457788899885422
Q ss_pred CCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccC------CeEEEEecCCeEEEEEeccCCccee
Q 001391 382 PGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSE------DTLYIATNHGYLYHTKLCDMDSVNW 455 (1088)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~------~~ll~~t~~g~i~~~~~~~~~~~~~ 455 (1088)
+...... ++.+. +..+.|... ..+...+.+|.. .... ..
T Consensus 368 i~~~~~s----~~iel------------------------~~pf~f~~~~~~v~k~~l~~LS~dg~h-----~sGs--~~ 412 (1062)
T KOG1912|consen 368 IHLDYRS----SSIEL------------------------VLPFDFNLSTKLVGKTSLISLSDDGSH-----SSGS--TC 412 (1062)
T ss_pred cCccccc----ccccc------------------------cccccccCceeehhhccccchhhcCCC-----CCCc--ee
Confidence 2110000 00000 000011100 011111111100 0000 00
Q ss_pred EEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCC
Q 001391 456 NKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGH 535 (1088)
Q Consensus 456 ~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 535 (1088)
.++...+ +.......+.+ .....-..++|+|...|+|.++|+.++..............+-+-.....+..++...
T Consensus 413 ~~~~p~p---~~t~~~~~p~~-n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~ 488 (1062)
T KOG1912|consen 413 VRMRPMP---ELTKVENDPGG-NTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSH 488 (1062)
T ss_pred eecccCc---ccceeecCCCC-CccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeecc
Confidence 0000000 00000111110 0001123689999999999999998876433221110000000000011111122111
Q ss_pred eEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCc
Q 001391 536 RFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (1088)
Q Consensus 536 ~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~ 611 (1088)
..=++++..+.+.+=|++.+.. +.+ + ........+|..+..|..++||+..-+|.-+-+||+..
T Consensus 489 ~n~~sg~vrN~l~vtdLrtGls-k~f--------R---~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt 552 (1062)
T KOG1912|consen 489 VNSASGGVRNDLVVTDLRTGLS-KRF--------R---GLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKT 552 (1062)
T ss_pred ccccccceeeeEEEEEcccccc-ccc--------c---cCCCCCcCcceeeeecccCceEEEEecccchHHHhhcc
Confidence 1112455556777888886642 111 1 00123467899999999999999999999999999864
No 212
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.28 E-value=3.7e-10 Score=116.04 Aligned_cols=334 Identities=16% Similarity=0.187 Sum_probs=200.8
Q ss_pred EEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEE-EEECCCEEEE
Q 001391 23 LCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV-ALFGEKRVKL 101 (1088)
Q Consensus 23 v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~l-a~~gd~~v~i 101 (1088)
.+|| |+ ++|+|+.++-.+.|-|..+-++++.|...+ +|.-|.|. .|. ...+ +.+-++.|.+
T Consensus 14 c~fS--p~----g~yiAs~~~yrlviRd~~tlq~~qlf~cld--ki~yieW~-------ads---~~ilC~~yk~~~vqv 75 (447)
T KOG4497|consen 14 CSFS--PC----GNYIASLSRYRLVIRDSETLQLHQLFLCLD--KIVYIEWK-------ADS---CHILCVAYKDPKVQV 75 (447)
T ss_pred eeEC--CC----CCeeeeeeeeEEEEeccchhhHHHHHHHHH--Hhhheeee-------ccc---eeeeeeeeccceEEE
Confidence 4799 99 999999998899999999887776666533 47888888 454 1333 3355899999
Q ss_pred EEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCC-EEEEEEcCCcEEEEEcCCCceEEEeccCCcee
Q 001391 102 FELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERCL 180 (1088)
Q Consensus 102 w~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~-~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~ 180 (1088)
|++... +....+..-.+.+.++.|+| ||+ .|.+..-|-.|.+|.+.+.+....-....+
T Consensus 76 wsl~Qp---------------ew~ckIdeg~agls~~~WSP---dgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~-- 135 (447)
T KOG4497|consen 76 WSLVQP---------------EWYCKIDEGQAGLSSISWSP---DGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTN-- 135 (447)
T ss_pred EEeecc---------------eeEEEeccCCCcceeeeECC---CcceEeeeecceeEEEEEEeccceeEEecccccC--
Confidence 999853 45566667778899999999 996 455566688999999988765543322222
Q ss_pred EEEEeeecCCCCCcEEEEEecCCe---EEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCC
Q 001391 181 LYSMKLWGDNLEALRIASGTIYNE---IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG 257 (1088)
Q Consensus 181 ~~s~~~~~~s~~~~~l~sg~~dg~---I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 257 (1088)
+...+| .++|.+.+..+.... +.+.... .-..+..+.-.+-
T Consensus 136 ~kg~~f---~~dg~f~ai~sRrDCkdyv~i~~c~---------------------------------~W~ll~~f~~dT~ 179 (447)
T KOG4497|consen 136 VKGYAF---HPDGQFCAILSRRDCKDYVQISSCK---------------------------------AWILLKEFKLDTI 179 (447)
T ss_pred ceeEEE---CCCCceeeeeecccHHHHHHHHhhH---------------------------------HHHHHHhcCCCcc
Confidence 223333 578887777664421 1111111 1123333444445
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC
Q 001391 258 SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 258 ~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~ 335 (1088)
..+++.|+|||..+ -+||.--. ..+ ......-.+..+.|+ +++++.|+.|+.+||-+-
T Consensus 180 DltgieWsPdg~~l---------aVwd~~Le--------ykv---~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh 239 (447)
T KOG4497|consen 180 DLTGIEWSPDGNWL---------AVWDNVLE--------YKV---YAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNH 239 (447)
T ss_pred cccCceECCCCcEE---------EEecchhh--------hee---eeeeeccceeEEEeccccceEEeeccchhhhhhce
Confidence 56667777777644 34543221 000 112222345666666 467777777777666432
Q ss_pred -C----Cc--------------------------------------------------------eeEEEcccC-----CC
Q 001391 336 -D----GK--------------------------------------------------------QLKMIKEHI-----GR 349 (1088)
Q Consensus 336 -~----~~--------------------------------------------------------~~~~~~~h~-----~~ 349 (1088)
+ ++ .+..++... .-
T Consensus 240 ~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~ 319 (447)
T KOG4497|consen 240 FTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKC 319 (447)
T ss_pred eeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccc
Confidence 1 00 011111101 11
Q ss_pred CeEEEEEcCCCCEEEEEeCC--CCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEe
Q 001391 350 GIWRCLYDSLSSLLVTAGFD--SAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHL 427 (1088)
Q Consensus 350 ~V~~l~~~~dg~~l~tg~~D--g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~ 427 (1088)
++--++|++|..+++|-... +.+-+||++...+...- ....+|+...|
T Consensus 320 g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL------------------------------iQk~piraf~W 369 (447)
T KOG4497|consen 320 GAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL------------------------------IQKHPIRAFEW 369 (447)
T ss_pred ccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh------------------------------hhccceeEEEe
Confidence 46778999999998886543 67889998653322111 11247899999
Q ss_pred ccCC-eEEEEecCCeEEEEEeccCCcceeEEeeee-cCCcceEEEecCCCCCCCcCCCCCeEEEecCCC
Q 001391 428 TSED-TLYIATNHGYLYHTKLCDMDSVNWNKILQV-SEGMPIICMDLLSNEPKYPCGIDDWVALGDGKG 494 (1088)
Q Consensus 428 s~~~-~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg 494 (1088)
.|.. ++++.+...++|.|..... ..... ..+..|..+..... +..++..+.|.
T Consensus 370 dP~~prL~vctg~srLY~W~psg~------~~V~vP~~GF~i~~l~W~~~--------g~~i~l~~kDa 424 (447)
T KOG4497|consen 370 DPGRPRLVVCTGKSRLYFWAPSGP------RVVGVPKKGFNIQKLQWLQP--------GEFIVLCGKDA 424 (447)
T ss_pred CCCCceEEEEcCCceEEEEcCCCc------eEEecCCCCceeeeEEecCC--------CcEEEEEcCCc
Confidence 9965 7888888888885543221 12122 22345555555433 36677777765
No 213
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=2e-08 Score=112.73 Aligned_cols=458 Identities=14% Similarity=0.156 Sum_probs=265.0
Q ss_pred eCCcceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEe
Q 001391 63 FHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFL 141 (1088)
Q Consensus 63 ~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~ 141 (1088)
+...+.+++.|. .+. .++|++| ||.++|..+.+...+.....-.....+..-+++.||...|.-+.|+
T Consensus 12 PnnvkL~c~~WN-------ke~----gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWN 80 (1189)
T KOG2041|consen 12 PNNVKLHCAEWN-------KES----GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWN 80 (1189)
T ss_pred CCCceEEEEEEc-------ccC----CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEec
Confidence 344578999998 554 6888877 8999999998654222110000111355667899999999999999
Q ss_pred cccCCCCEEEEEEcCCcEEEEEcCCCceEEEe-ccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCC
Q 001391 142 KVCNGNRSLAIGCSDNSIRVWDISNSSIILEV-HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLN 220 (1088)
Q Consensus 142 p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~-~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~ 220 (1088)
. +.+.|-|...+|.|.+|-+-.+.....+ ....++.+.|+++ ..+|..|+....||.|.|=.++.+
T Consensus 81 e---~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsW---n~dG~kIcIvYeDGavIVGsvdGN------- 147 (1189)
T KOG2041|consen 81 E---NNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSW---NLDGTKICIVYEDGAVIVGSVDGN------- 147 (1189)
T ss_pred c---ccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEE---cCCCcEEEEEEccCCEEEEeeccc-------
Confidence 8 8888989999999999999777654332 2345667778876 578999999999999998887722
Q ss_pred CCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCcee-e
Q 001391 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEE-V 299 (1088)
Q Consensus 221 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~-i 299 (1088)
++|...-.+. ....+.|++|.+.++.+-..|.+.++|....-...- ...+ +
T Consensus 148 -----------------RIwgKeLkg~----------~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl-~~~c~V 199 (1189)
T KOG2041|consen 148 -----------------RIWGKELKGQ----------LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKL-EKDCEV 199 (1189)
T ss_pred -----------------eecchhcchh----------eccceeecccHHHHHhhhcCCcEEEecccccHHHhh-hhceEE
Confidence 2222211111 123688999999888888889999999765311000 0011 1
Q ss_pred e-ceeeeccCcceEEEEEC-C---------CEEEEEeCCCcEEEEcC--CCceeEEEcccCCCCeEEEEEcCCCCEEEEE
Q 001391 300 G-SSVLYGHNARVWDCCLT-D---------SFIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366 (1088)
Q Consensus 300 ~-~~~~~~h~~~I~~v~~~-~---------~~l~sg~~Dg~i~vWd~--~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg 366 (1088)
. .-.+......|..+.|. + ..++.+-.+|.+.+..- +..++-.-.+ - .|....|+++|..|+.+
T Consensus 200 n~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m-~~vgakWnh~G~vLAvc 276 (1189)
T KOG2041|consen 200 NGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--M-KIVGAKWNHNGAVLAVC 276 (1189)
T ss_pred eeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--c-EeecceecCCCcEEEEc
Confidence 0 00112222346666764 1 47899999999988776 2233322222 2 37889999999999999
Q ss_pred eCCC---------CEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEe
Q 001391 367 GFDS---------AIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT 437 (1088)
Q Consensus 367 ~~Dg---------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t 437 (1088)
|.|. .|.++.. ....++.+...+..|++++|-..|..++..
T Consensus 277 G~~~da~~~~d~n~v~Fysp------------------------------~G~i~gtlkvpg~~It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 277 GNDSDADEPTDSNKVHFYSP------------------------------YGHIVGTLKVPGSCITGLSWEGTGLRIAIA 326 (1189)
T ss_pred cCcccccCccccceEEEecc------------------------------chhheEEEecCCceeeeeEEcCCceEEEEE
Confidence 8763 2222222 112344455556679999999888888888
Q ss_pred cCCeEEEEEeccCCcceeEEe-------eeecC--CcceEEEecCCCCCC----------CcCCCCCeEEEecCCCCEEE
Q 001391 438 NHGYLYHTKLCDMDSVNWNKI-------LQVSE--GMPIICMDLLSNEPK----------YPCGIDDWVALGDGKGNMTI 498 (1088)
Q Consensus 438 ~~g~i~~~~~~~~~~~~~~~~-------~~~~~--~~~i~~l~~~~~~~~----------~s~~~~~~la~g~~dg~I~i 498 (1088)
-++.|+..++... -+|..+ .++.+ ...|.-++...+... ..+..--.++.-..+|.|.-
T Consensus 327 vdsfiyfanIRP~--ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e 404 (1189)
T KOG2041|consen 327 VDSFIYFANIRPE--YKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGVIPE 404 (1189)
T ss_pred ecceEEEEeeccc--ceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCCCcc
Confidence 8889888776543 223221 12221 112333333222200 01111123444444555554
Q ss_pred EEE-cCCCcCcceeeeeeeecccc---ceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCC----------
Q 001391 499 VRV-VGDVHTPQLSFTFTWSAGIE---RQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESS---------- 564 (1088)
Q Consensus 499 w~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~---------- 564 (1088)
++. ++....-...+.-......+ ..+...+. .-++.+++.++.+ .+.+|....++........
T Consensus 405 ~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv--~vn~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~ 481 (1189)
T KOG2041|consen 405 YSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFV--CVNGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHG 481 (1189)
T ss_pred hhhhhcccceEEEeeecccCCcCCCCcceeeeeEE--EecceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccC
Confidence 421 11110000011000000111 11222121 2356677777654 5788976544321111110
Q ss_pred -------cccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcc
Q 001391 565 -------KTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (1088)
Q Consensus 565 -------~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~ 612 (1088)
....++.-..-..+...+|.+++.| .++|.+|-..|.|+-|.+.+.
T Consensus 482 Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv 534 (1189)
T KOG2041|consen 482 DDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNV 534 (1189)
T ss_pred CCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecce
Confidence 0001111101123567788888877 789999999999999998864
No 214
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=9e-11 Score=125.28 Aligned_cols=200 Identities=18% Similarity=0.168 Sum_probs=141.7
Q ss_pred EEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCC
Q 001391 69 HGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN 147 (1088)
Q Consensus 69 ~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~ 147 (1088)
..++|+ .+| ..+++++ |+++|||++.. ...+.....|...|.++.|+| |+
T Consensus 148 k~vaf~-------~~g----s~latgg~dg~lRv~~~Ps---------------~~t~l~e~~~~~eV~DL~FS~---dg 198 (398)
T KOG0771|consen 148 KVVAFN-------GDG----SKLATGGTDGTLRVWEWPS---------------MLTILEEIAHHAEVKDLDFSP---DG 198 (398)
T ss_pred eEEEEc-------CCC----CEeeeccccceEEEEecCc---------------chhhhhhHhhcCccccceeCC---CC
Confidence 455666 666 6777776 99999999774 445566678999999999999 99
Q ss_pred CEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEE-EeeecCC-CCCcEEEEE-ecCCeEEEEEeccCccccCCCCCCC
Q 001391 148 RSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYS-MKLWGDN-LEALRIASG-TIYNEIIVWKVDWEHVAPLLNSPEG 224 (1088)
Q Consensus 148 ~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s-~~~~~~s-~~~~~l~sg-~~dg~I~vwd~~~~~~~~~~~~~~~ 224 (1088)
+.|++-+.| ..+||+++++..+...........++ ++|..++ .+..++++- ..-+.|+.||+.
T Consensus 199 k~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~------------- 264 (398)
T KOG0771|consen 199 KFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDIS------------- 264 (398)
T ss_pred cEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEee-------------
Confidence 999999999 99999999997777665433333333 3442211 112344443 334567777765
Q ss_pred ccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceee
Q 001391 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (1088)
Q Consensus 225 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~ 304 (1088)
+|... ..-+......-...|.+++.+++|++++.|+.||.|-|++..+. +.+. +.-
T Consensus 265 --------------~w~~~-~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~l--------q~~~-~vk 320 (398)
T KOG0771|consen 265 --------------LWSGS-NFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSL--------QRLQ-YVK 320 (398)
T ss_pred --------------eeccc-cccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEecee--------eeeE-eeh
Confidence 23221 11112222223457999999999999999999999999999884 4443 366
Q ss_pred eccCcceEEEEECC--CEEEEEeCCCcEEEEcC
Q 001391 305 YGHNARVWDCCLTD--SFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 305 ~~h~~~I~~v~~~~--~~l~sg~~Dg~i~vWd~ 335 (1088)
..|...|+.+.|+| +++++-+.|...+|..+
T Consensus 321 ~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 321 EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred hhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 78999999999994 67888888888887766
No 215
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.26 E-value=5.4e-10 Score=122.03 Aligned_cols=244 Identities=17% Similarity=0.154 Sum_probs=155.6
Q ss_pred CCCCEEEEEeCCeEEEEECCCCeeEEEE---eeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCC
Q 001391 33 SSLPFLLAGSGSQVLLYDLEAGTLIRPF---QVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELS 109 (1088)
Q Consensus 33 ~~~~~laag~d~~I~vwd~~tg~~~~~~---~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~ 109 (1088)
..+.+|.-..+..++||+...+..+..- ..+.+..-.+=+|... ...+.+ ..+++..+-+.|.+.+......
T Consensus 133 ~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~--~a~~~g---~dllIGf~tGqvq~idp~~~~~ 207 (636)
T KOG2394|consen 133 GKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSF--TATPKG---LDLLIGFTTGQVQLIDPINFEV 207 (636)
T ss_pred CCCCEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceeccccc--ccCCCC---cceEEeeccCceEEecchhhHH
Confidence 4477888888889999998754322111 0112212223333211 122444 2688888889999988764220
Q ss_pred CCCCCCCcccccccee-eeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeec
Q 001391 110 PNSQYQPETCVNLSLV-QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWG 188 (1088)
Q Consensus 110 ~~~~~~~~~~~~~~~~-~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~ 188 (1088)
.++. ....-....|+|+.|.|. +...++.+-.+|.+.++|.. +..+.....|..
T Consensus 208 ------------sklfne~r~i~ktsvT~ikWvpg--~~~~Fl~a~~sGnlyly~~~-------~~~~~t~p~~~~---- 262 (636)
T KOG2394|consen 208 ------------SKLFNEERLINKSSVTCIKWVPG--SDSLFLVAHASGNLYLYDKE-------IVCGATAPSYQA---- 262 (636)
T ss_pred ------------HHhhhhcccccccceEEEEEEeC--CCceEEEEEecCceEEeecc-------ccccCCCCcccc----
Confidence 0000 001112378999999992 33455666789999999872 112222222221
Q ss_pred CCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCC
Q 001391 189 DNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG 268 (1088)
Q Consensus 189 ~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g 268 (1088)
-+++..++.. .|.-. ....++....--++.|...+|+|||
T Consensus 263 -~k~~~~f~i~-------t~ksk--------------------------------~~rNPv~~w~~~~g~in~f~FS~DG 302 (636)
T KOG2394|consen 263 -LKDGDQFAIL-------TSKSK--------------------------------KTRNPVARWHIGEGSINEFAFSPDG 302 (636)
T ss_pred -cCCCCeeEEe-------eeecc--------------------------------ccCCccceeEeccccccceeEcCCC
Confidence 1334333332 22221 0223444444455689999999999
Q ss_pred CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcc
Q 001391 269 SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKE 345 (1088)
Q Consensus 269 ~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~ 345 (1088)
++||+.|.||.+||+|..+.. .+. .+...-+...|++|+ +.+|++|++|-.|.||.+ +.+.+..-++
T Consensus 303 ~~LA~VSqDGfLRvF~fdt~e--------Llg--~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqG 372 (636)
T KOG2394|consen 303 KYLATVSQDGFLRIFDFDTQE--------LLG--VMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQG 372 (636)
T ss_pred ceEEEEecCceEEEeeccHHH--------HHH--HHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccc
Confidence 999999999999999999843 232 333344678999999 689999999999999999 7888888899
Q ss_pred cCCCCeEEEEEc
Q 001391 346 HIGRGIWRCLYD 357 (1088)
Q Consensus 346 h~~~~V~~l~~~ 357 (1088)
|.. .|..++|.
T Consensus 373 HkS-WVs~VaFD 383 (636)
T KOG2394|consen 373 HKS-WVSVVAFD 383 (636)
T ss_pred ccc-ceeeEeec
Confidence 998 59999998
No 216
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=8e-09 Score=117.29 Aligned_cols=556 Identities=14% Similarity=0.107 Sum_probs=284.8
Q ss_pred CceEEecCCCc-------eeeeeEEEEEeccCC-----CCC---CCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcce
Q 001391 5 DLSEWRLDVGQ-------YLGEISALCFVHLPS-----HLS---SLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRL 68 (1088)
Q Consensus 5 ~i~iWdl~~g~-------~~~~V~~v~fs~~pd-----~~~---~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V 68 (1088)
.|.+-|..+-+ |...|+.|.|. |. .++ +.-+||++. .|.|.+||...+..+..++.+.. +|
T Consensus 36 lV~VVDs~s~q~iqsie~h~s~V~~VrWa--p~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~-~~ 112 (1062)
T KOG1912|consen 36 LVSVVDSRSLQLIQSIELHQSAVTSVRWA--PAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSND-SV 112 (1062)
T ss_pred eEEEEehhhhhhhhccccCccceeEEEec--cCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCc-ch
Confidence 35555555544 66889999998 64 222 334445555 49999999999988888887555 79
Q ss_pred EEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCC
Q 001391 69 HGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNR 148 (1088)
Q Consensus 69 ~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~ 148 (1088)
..++|-+. .++. ++.+++..+..++.+|+..+++ .+-....-.....|+.+.|. |.+
T Consensus 113 qdl~W~~~----rd~S--rd~LlaIh~ss~lvLwntdtG~---------------k~Wk~~ys~~iLs~f~~DPf--d~r 169 (1062)
T KOG1912|consen 113 QDLCWVPA----RDDS--RDVLLAIHGSSTLVLWNTDTGE---------------KFWKYDYSHEILSCFRVDPF--DSR 169 (1062)
T ss_pred hheeeeec----cCcc--hheeEEecCCcEEEEEEccCCc---------------eeeccccCCcceeeeeeCCC--Ccc
Confidence 99999754 1333 3478888999999999988643 33333333445566888885 455
Q ss_pred EEEEEEcCCcEEEEEcCC-------CceEEEeccC-C------------------c----eeEEEEeeecCCCCCcEEEE
Q 001391 149 SLAIGCSDNSIRVWDISN-------SSIILEVHSP-E------------------R----CLLYSMKLWGDNLEALRIAS 198 (1088)
Q Consensus 149 ~lasgs~Dg~V~iWd~~~-------~~~~~~~~~~-~------------------~----~~~~s~~~~~~s~~~~~l~s 198 (1088)
.+..-+..|.+.+-+.-. ++.. .+..+ . . -+.|++. +.++|.-.-+.-
T Consensus 170 h~~~l~s~g~vl~~~~l~~sep~~pgk~~-qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~-faf~p~~rn~lf 247 (1062)
T KOG1912|consen 170 HFCVLGSKGFVLSCKDLGLSEPDVPGKEF-QITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQ-FAFSPHWRNILF 247 (1062)
T ss_pred eEEEEccCceEEEEeccCCCCCCCCceeE-EEecCccchhhhhhhhhccccccCCCcchhHHHHHHh-hhcChhhhceEE
Confidence 555555567776665521 1111 11111 0 0 0011111 112333333333
Q ss_pred EecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCC--CEEEEEEC
Q 001391 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG--SKLVSVSD 276 (1088)
Q Consensus 199 g~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g--~~l~s~s~ 276 (1088)
......+.++|++ -..++....--.+.+.-+.+.|++ ..|...-.
T Consensus 248 i~~prellv~dle---------------------------------~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~ 294 (1062)
T KOG1912|consen 248 ITFPRELLVFDLE---------------------------------YECCLAVVPIERGGAKFVDVLPDPRRDALFCLHS 294 (1062)
T ss_pred EEeccceEEEcch---------------------------------hhceeEEEEeccCCcceeEeccCCCcceEEEEec
Confidence 4456778888887 344555544445555566777765 56888899
Q ss_pred CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEE-------------EC-CCEEEEEeCCCcEEEEcC-CCce--
Q 001391 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC-------------LT-DSFIITAGEDCTCRVWGS-DGKQ-- 339 (1088)
Q Consensus 277 Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~-------------~~-~~~l~sg~~Dg~i~vWd~-~~~~-- 339 (1088)
||.+.+|--+........+.+.+. ..-...+-+++ -+ ++.++.--.+|...+|.+ +|+.
T Consensus 295 nG~ltirvrk~~~~~f~~~~~~l~----~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~ 370 (1062)
T KOG1912|consen 295 NGRLTIRVRKEEPTEFKKPNASLS----MDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHL 370 (1062)
T ss_pred CCeEEEEEeeccCccccccchhhc----cccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCc
Confidence 999999976653211000000000 00001111111 11 233333345666677776 3220
Q ss_pred -----------------------------eEEEcccCCCCeEEEEEc-----------CCC-------CEEEEEeCCCCE
Q 001391 340 -----------------------------LKMIKEHIGRGIWRCLYD-----------SLS-------SLLVTAGFDSAI 372 (1088)
Q Consensus 340 -----------------------------~~~~~~h~~~~V~~l~~~-----------~dg-------~~l~tg~~Dg~I 372 (1088)
+....+|.. +..+.... |.+ .+++.|...|+|
T Consensus 371 ~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~s-Gs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV 449 (1062)
T KOG1912|consen 371 DYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSS-GSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTV 449 (1062)
T ss_pred ccccccccccccccccCceeehhhccccchhhcCCCCC-CceeeecccCcccceeecCCCCCccceeeeeEEeecCCceE
Confidence 000112332 23333222 222 267888899999
Q ss_pred EEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEe-------cCCe---E
Q 001391 373 KVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT-------NHGY---L 442 (1088)
Q Consensus 373 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t-------~~g~---i 442 (1088)
.++|+.+..+. ..+..|...|+++.|.....++..+ ..|+ +
T Consensus 450 ~vvdvst~~v~-----------------------------~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l 500 (1062)
T KOG1912|consen 450 DVVDVSTNAVA-----------------------------ASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDL 500 (1062)
T ss_pred EEEEecchhhh-----------------------------hhhcccccceeeeeeccceeEEEeeeccccccccceeeeE
Confidence 99998543221 1112234567778777665555432 1122 2
Q ss_pred EEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceee------eeee
Q 001391 443 YHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSF------TFTW 516 (1088)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~------~~~~ 516 (1088)
...++.......+ +..+++++.+|..+.++..+ .++++.-.+.-+.+|++.+-.+...... ...|
T Consensus 501 ~vtdLrtGlsk~f-R~l~~~despI~~irvS~~~--------~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leW 571 (1062)
T KOG1912|consen 501 VVTDLRTGLSKRF-RGLQKPDESPIRAIRVSSSG--------RYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEW 571 (1062)
T ss_pred EEEEccccccccc-ccCCCCCcCcceeeeecccC--------ceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEee
Confidence 2223333333333 23366677889888886654 8999999999999999966444322111 2223
Q ss_pred eccccceeeeEEE--eecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCE
Q 001391 517 SAGIERQLLGTYW--CKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEV 594 (1088)
Q Consensus 517 ~~~~~~~~~~~~~--~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~ 594 (1088)
....+..+...-. ..+...+..++.+.+. +++.+............ .....+.| .-.+..|+|- +..
T Consensus 572 sl~~~~si~qk~ls~q~sms~n~vv~ds~es--~~~~~~~~a~~~sdgsq---~~~a~esf----afal~~mAwk--~d~ 640 (1062)
T KOG1912|consen 572 SLPKHPSIKQKELSKQSSMSENLVVLDSVES--RIYHITLSALVVSDGSQ---VNTAWESF----AFALCAMAWK--DDI 640 (1062)
T ss_pred cccCCCCcccccchhhhhhhhceeeeccccc--hheehhhhhhhhccccc---hhhHHHHH----HHHHHhhhcc--CCe
Confidence 3111111111000 0011223344333232 33322211111111000 00000111 1123345554 779
Q ss_pred EEEEcCCCcEEEEeCCcccccc---cc-cccccccCcceeecccccccceeEEEEEecc--CCceEEEE-ecCCCeEEEE
Q 001391 595 LFCGDLRGNLVLFPLLRDLLND---KS-VALHVEVSPLNYFKGAHGISTVSTLSVAKLR--SNQTEIRS-TGGDGCICYL 667 (1088)
Q Consensus 595 LatGs~dg~I~Iw~~~~~~~~~---~~-~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~--~~~~~l~t-~g~Dg~i~iw 667 (1088)
|+.|+.+|++.+||+....... .+ +..+... .....|-|. -.|....|.+.- .....+.+ +|+|++.++.
T Consensus 641 lv~GD~~GNl~~WDlg~R~SRg~~d~p~~ra~~l~--~~~ipG~~~-~lvl~~d~~~lwdtk~~~lV~siag~dssfrll 717 (1062)
T KOG1912|consen 641 LVVGDVEGNLVVWDLGRRQSRGVRDSPDPRAHSLT--FPQIPGDHT-TLVLELDWLPLWDTKADTLVLSIAGMDSSFRLL 717 (1062)
T ss_pred eEeecccCceeEEecccccccCccCCCCchhhhee--cccCCCCce-EEEEecCcceecccccceeeeeeccCCcceEEE
Confidence 9999999999999987532211 00 0001000 011223332 345555555421 11133333 5999999999
Q ss_pred EeecCCcceee
Q 001391 668 EYDKDRESLEF 678 (1088)
Q Consensus 668 ~~~~~~~~~~~ 678 (1088)
|++-.+....+
T Consensus 718 dvdlc~~~~~~ 728 (1062)
T KOG1912|consen 718 DVDLCEKSPLV 728 (1062)
T ss_pred EEEecccCcee
Confidence 99876544333
No 217
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.25 E-value=1.9e-08 Score=103.78 Aligned_cols=302 Identities=16% Similarity=0.151 Sum_probs=175.4
Q ss_pred eEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCC
Q 001391 68 LHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN 147 (1088)
Q Consensus 68 V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~ 147 (1088)
...++|. .|. ..++++.|.-.+||+.+.-. ...+...+...+.-+...- -.
T Consensus 8 ~lsvs~N-------QD~----ScFava~~~Gfriyn~~P~k---------------e~~~r~~~~~G~~~veMLf---R~ 58 (346)
T KOG2111|consen 8 TLSVSFN-------QDH----SCFAVATDTGFRIYNCDPFK---------------ESASRQFIDGGFKIVEMLF---RS 58 (346)
T ss_pred eeEEEEc-------cCC----ceEEEEecCceEEEecCchh---------------hhhhhccccCchhhhhHhh---hh
Confidence 4457787 554 68888999999999988421 1111111111111111111 22
Q ss_pred CEEEE-EEc------CCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCC
Q 001391 148 RSLAI-GCS------DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLN 220 (1088)
Q Consensus 148 ~~las-gs~------Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~ 220 (1088)
++||. ||. -+.|.|||=...+++.++.-. ..+.++.+ . ...|++. ..+.|.||....
T Consensus 59 N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~--~~I~~V~l---~--r~riVvv-l~~~I~VytF~~-------- 122 (346)
T KOG2111|consen 59 NYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFN--SEIKAVKL---R--RDRIVVV-LENKIYVYTFPD-------- 122 (346)
T ss_pred ceEEEecCCCCCCCCCceEEEEecccCcEEEEEEec--cceeeEEE---c--CCeEEEE-ecCeEEEEEcCC--------
Confidence 44433 433 357999996556666655422 22444544 2 3344443 357899998761
Q ss_pred CCCCccCCCCCCCCceeEecccccceeeeEEEeCC--CCCEEEEEEcCCCCEEEE-EECCCcEEEEEcCCCcccCCCCce
Q 001391 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH--EGSIFRIEWSSCGSKLVS-VSDDRSARIWEVRAEYWKDSDSIE 297 (1088)
Q Consensus 221 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh--~~~V~~v~~sp~g~~l~s-~s~Dg~v~iWd~~~~~~~~~~~~~ 297 (1088)
..+.++.+..- .....++.-..+...|+. |-.-|.|+|-|+...+. .
T Consensus 123 ------------------------n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~------~ 172 (346)
T KOG2111|consen 123 ------------------------NPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKP------N 172 (346)
T ss_pred ------------------------ChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCc------C
Confidence 22233332211 112333332333344443 44568999999987432 1
Q ss_pred eeeceeeeccCcceEEEEEC--CCEEEEEeCCCc-EEEEcC-CCceeEEEccc-CCCCeEEEEEcCCCCEEEEEeCCCCE
Q 001391 298 EVGSSVLYGHNARVWDCCLT--DSFIITAGEDCT-CRVWGS-DGKQLKMIKEH-IGRGIWRCLYDSLSSLLVTAGFDSAI 372 (1088)
Q Consensus 298 ~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~-i~vWd~-~~~~~~~~~~h-~~~~V~~l~~~~dg~~l~tg~~Dg~I 372 (1088)
.+.....|...|.|++.+ |.+++|++..|+ |||||. +|..+..++.- ....|.+++|+|++.+|++.+..|++
T Consensus 173 --~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTl 250 (346)
T KOG2111|consen 173 --APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTL 250 (346)
T ss_pred --CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeE
Confidence 123788999999999998 899999999998 699999 89999888542 22359999999999999999999999
Q ss_pred EEEEcCCCCCCcccCCccccccCCCcceEEeeeCCC---ccceeeccCCCCceEEEEeccC-CeEEEEecCCeEEEEEec
Q 001391 373 KVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNF---SEQIRLTDSKSEYVRCLHLTSE-DTLYIATNHGYLYHTKLC 448 (1088)
Q Consensus 373 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~V~~l~~s~~-~~ll~~t~~g~i~~~~~~ 448 (1088)
.|+.+.......- .+ .+..+.. .-.|.. ......+.-.++..-.++|..+ +.+++...||..+.+.+.
T Consensus 251 HiF~l~~~~~~~~-~~-SSl~~~~------~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~ 322 (346)
T KOG2111|consen 251 HIFSLRDTENTED-ES-SSLSFKR------LVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFD 322 (346)
T ss_pred EEEEeecCCCCcc-cc-ccccccc------cccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEec
Confidence 9999954321111 00 0111000 000000 0000111112334556677766 677888888888877665
Q ss_pred cCCcce
Q 001391 449 DMDSVN 454 (1088)
Q Consensus 449 ~~~~~~ 454 (1088)
..+.++
T Consensus 323 ~~~~g~ 328 (346)
T KOG2111|consen 323 PKNGGE 328 (346)
T ss_pred cccccc
Confidence 554433
No 218
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.23 E-value=1.1e-09 Score=112.56 Aligned_cols=204 Identities=16% Similarity=0.162 Sum_probs=156.7
Q ss_pred ceEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~ 145 (1088)
+|.+.+|+ +|. ..+|++ ....|.||...... ..+..+++..|...|+.|+|+|
T Consensus 12 pitchAwn-------~dr----t~iAv~~~~~evhiy~~~~~~------------~w~~~htls~Hd~~vtgvdWap--- 65 (361)
T KOG1523|consen 12 PITCHAWN-------SDR----TQIAVSPNNHEVHIYSMLGAD------------LWEPAHTLSEHDKIVTGVDWAP--- 65 (361)
T ss_pred ceeeeeec-------CCC----ceEEeccCCceEEEEEecCCC------------CceeceehhhhCcceeEEeecC---
Confidence 79999999 776 455554 46799999987533 2678899999999999999999
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCc
Q 001391 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (1088)
Q Consensus 146 d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~ 225 (1088)
..+.|++|+.|..-++|....+ +
T Consensus 66 ~snrIvtcs~drnayVw~~~~~-------------------------~-------------------------------- 88 (361)
T KOG1523|consen 66 KSNRIVTCSHDRNAYVWTQPSG-------------------------G-------------------------------- 88 (361)
T ss_pred CCCceeEccCCCCccccccCCC-------------------------C--------------------------------
Confidence 8999999999998888865211 1
Q ss_pred cCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeee
Q 001391 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (1088)
Q Consensus 226 s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~ 305 (1088)
+-++...+..|+...++|.|+|.+..+++||.-+.|.+|-++.... --+....-.
T Consensus 89 -------------------~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd------WWVsKhikk 143 (361)
T KOG1523|consen 89 -------------------TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND------WWVSKHIKK 143 (361)
T ss_pred -------------------eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc------eehhhhhCC
Confidence 1222334456788999999999999999999999999998876421 111112445
Q ss_pred ccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-----C--------------CceeEEEcccCCCCeEEEEEcCCCCEEE
Q 001391 306 GHNARVWDCCLT--DSFIITAGEDCTCRVWGS-----D--------------GKQLKMIKEHIGRGIWRCLYDSLSSLLV 364 (1088)
Q Consensus 306 ~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-----~--------------~~~~~~~~~h~~~~V~~l~~~~dg~~l~ 364 (1088)
.+...|.++.|+ +-+++.|+.|+.+||+.. + |+++.++....+ .|..+.|+|+|..|+
T Consensus 144 PirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~gg-wvh~v~fs~sG~~la 222 (361)
T KOG1523|consen 144 PIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGG-WVHGVLFSPSGNRLA 222 (361)
T ss_pred ccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCC-ceeeeEeCCCCCEee
Confidence 667889999999 457888999999999986 1 122333433334 699999999999999
Q ss_pred EEeCCCCEEEEEcCC
Q 001391 365 TAGFDSAIKVHQFQA 379 (1088)
Q Consensus 365 tg~~Dg~I~iwd~~~ 379 (1088)
=.+.|..+.+-|..+
T Consensus 223 wv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 223 WVGHDSTVSFVDAAG 237 (361)
T ss_pred EecCCCceEEeecCC
Confidence 999999999998854
No 219
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=8.3e-10 Score=129.30 Aligned_cols=231 Identities=12% Similarity=0.040 Sum_probs=149.9
Q ss_pred CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC---CCEEEEEEeccCCCCCCCCCCcccc
Q 001391 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPETCV 120 (1088)
Q Consensus 44 ~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g---d~~v~iw~l~~~~~~~~~~~~~~~~ 120 (1088)
.+|.|||..... ...+..+.. .+...+|| |||+ .++.++. +..|.+||+....
T Consensus 184 ~~i~i~d~dg~~-~~~lt~~~~-~v~~p~wS-------PDG~---~la~~s~~~~~~~i~i~dl~tg~------------ 239 (429)
T PRK01742 184 YEVRVADYDGFN-QFIVNRSSQ-PLMSPAWS-------PDGS---KLAYVSFENKKSQLVVHDLRSGA------------ 239 (429)
T ss_pred EEEEEECCCCCC-ceEeccCCC-ccccceEc-------CCCC---EEEEEEecCCCcEEEEEeCCCCc------------
Confidence 589999986544 445555444 68999999 8883 3333332 2479999987543
Q ss_pred ccceeeeccCCCCcEEEEEEecccCCCCEEEEEE-cCCcEEEE--EcCCCceEEEeccCCceeEEEEeeecCCCCCcEEE
Q 001391 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SDNSIRVW--DISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (1088)
Q Consensus 121 ~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs-~Dg~V~iW--d~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~ 197 (1088)
.+.+..+.+|. ..++|+| ||+.|+.++ .+|.+.|| |+.+++. ..+..+. ....+..+ +||+..|+
T Consensus 240 -~~~l~~~~g~~---~~~~wSP---DG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~-~~~~~~~w---SpDG~~i~ 307 (429)
T PRK01742 240 -RKVVASFRGHN---GAPAFSP---DGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGA-GNNTEPSW---SPDGQSIL 307 (429)
T ss_pred -eEEEecCCCcc---CceeECC---CCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCC-CCcCCEEE---CCCCCEEE
Confidence 33445555554 3689999 999888764 68876665 5555543 3333222 22334444 68888766
Q ss_pred E-EecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC
Q 001391 198 S-GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD 276 (1088)
Q Consensus 198 s-g~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~ 276 (1088)
. +..+|...||++.. .+.....+ ++.+ ....|+|+|++++..+.
T Consensus 308 f~s~~~g~~~I~~~~~--------------------------------~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 308 FTSDRSGSPQVYRMSA--------------------------------SGGGASLV-GGRG--YSAQISADGKTLVMING 352 (429)
T ss_pred EEECCCCCceEEEEEC--------------------------------CCCCeEEe-cCCC--CCccCCCCCCEEEEEcC
Confidence 5 44678899998761 11111222 3443 45789999999988887
Q ss_pred CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC---CCceeEEEcccCCCCe
Q 001391 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS---DGKQLKMIKEHIGRGI 351 (1088)
Q Consensus 277 Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~---~~~~~~~~~~h~~~~V 351 (1088)
++ +.+||+.++.. +.+ ...+ ....+.|+ +.+|+.++.++.+.+|.+ +|+....+..|.+ .+
T Consensus 353 ~~-i~~~Dl~~g~~------~~l----t~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g-~~ 418 (429)
T PRK01742 353 DN-VVKQDLTSGST------EVL----SSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG-QV 418 (429)
T ss_pred CC-EEEEECCCCCe------EEe----cCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCC-CC
Confidence 65 55599887643 111 1111 22456677 678999998998887775 7888899988887 58
Q ss_pred EEEEEcCC
Q 001391 352 WRCLYDSL 359 (1088)
Q Consensus 352 ~~l~~~~d 359 (1088)
...+|+|-
T Consensus 419 ~~p~wsp~ 426 (429)
T PRK01742 419 KFPAWSPY 426 (429)
T ss_pred CCcccCCC
Confidence 88999874
No 220
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.21 E-value=1e-09 Score=113.56 Aligned_cols=271 Identities=15% Similarity=0.186 Sum_probs=168.2
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCe-----eEEEEeeeC-----------CcceEEEEeccccccc
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT-----LIRPFQVFH-----------GIRLHGISCNFINCTE 80 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~-----~~~~~~~~~-----------~~~V~~i~~s~~~~~~ 80 (1088)
.-|.+|.|. .. |.+||+|. ||.|.+|.-.... ....++.|+ ..+|..|.|.+.
T Consensus 26 diis~vef~--~~----Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~---- 95 (433)
T KOG1354|consen 26 DIISAVEFD--HY----GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDD---- 95 (433)
T ss_pred cceeeEEee--cc----cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCC----
Confidence 458899999 66 89999999 7999999754322 233444333 246788888733
Q ss_pred CCCccceeeEEEEECCCEEEEEEeccCCCCCCCCC------Cc--------------cccccceeeec-cCCCCcEEEEE
Q 001391 81 GSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQ------PE--------------TCVNLSLVQSL-PRLSHWVFDVC 139 (1088)
Q Consensus 81 ~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~------~~--------------~~~~~~~~~~l-~~h~~~I~~v~ 139 (1088)
.+. ...|++..|++|++|.+.......+.+. |. ..+.-.+.+.+ .+|+-.|+++.
T Consensus 96 -~n~---a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS 171 (433)
T KOG1354|consen 96 -GNL---AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSIS 171 (433)
T ss_pred -CCc---cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeee
Confidence 222 3667777799999999985442221110 00 00111222332 46888999999
Q ss_pred EecccCCCCEEEEEEcCCcEEEEEcCCCceEE---EeccCC----ceeEEEEeeecCCCCCcEEEEEecCCeEEEEEecc
Q 001391 140 FLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL---EVHSPE----RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (1088)
Q Consensus 140 f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~---~~~~~~----~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~ 212 (1088)
++. |++.++++ .|=.|.+|+++--.... -++.+. ..++.+..|++. ...+++-.+..|+|++-|++.
T Consensus 172 ~Ns---D~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~--~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 172 VNS---DKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPH--HCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred ecC---ccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHh--HccEEEEecCCCcEEEeechh
Confidence 998 99988887 48889999987433222 222221 234556666532 356777888899999999982
Q ss_pred CccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccC
Q 001391 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292 (1088)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~ 292 (1088)
..+ .+..-+++..+......--|.+--..|..+.|+++|+++++-.. -+|++||+....
T Consensus 246 ~aL-----------------Cd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~--- 304 (433)
T KOG1354|consen 246 SAL-----------------CDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEA--- 304 (433)
T ss_pred hhh-----------------hcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccC---
Confidence 211 11111111111112222223344567889999999999988654 589999996542
Q ss_pred CCCceeeeceeeeccC------------cce---EEEEECC--CEEEEEeCCCcEEEEcC
Q 001391 293 SDSIEEVGSSVLYGHN------------ARV---WDCCLTD--SFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 293 ~~~~~~i~~~~~~~h~------------~~I---~~v~~~~--~~l~sg~~Dg~i~vWd~ 335 (1088)
+++. +..-|. ..| ..++|+| .+++||+.....++++.
T Consensus 305 ----~pv~--t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 305 ----KPVE--TYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred ----Ccce--EEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecC
Confidence 2222 222221 122 4577774 59999999999999997
No 221
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=6.1e-10 Score=130.40 Aligned_cols=230 Identities=12% Similarity=0.007 Sum_probs=148.0
Q ss_pred CCCceEEecCCCc------eeeeeEEEEEeccCCCCCCCCEEEEEe-C---CeEEEEECCCCeeEEEEeeeCCcceEEEE
Q 001391 3 KKDLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGS-G---SQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1088)
Q Consensus 3 d~~i~iWdl~~g~------~~~~V~~v~fs~~pd~~~~~~~laag~-d---~~I~vwd~~tg~~~~~~~~~~~~~V~~i~ 72 (1088)
+..|.+||..... +...|...+|| || ++.|+..+ + ..|++||+.+++... +....+ ....++
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wS--PD----G~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g-~~~~~~ 254 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWS--PD----GSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRG-HNGAPA 254 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEc--CC----CCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCC-ccCcee
Confidence 4679999976543 34568999999 99 88887755 2 579999999875422 222222 245688
Q ss_pred ecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEE
Q 001391 73 CNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1088)
Q Consensus 73 ~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la 151 (1088)
|+ |||+ .++.+. .++.+.||.++... .....+..+...+.+..|+| ||+.|+
T Consensus 255 wS-------PDG~---~La~~~~~~g~~~Iy~~d~~~--------------~~~~~lt~~~~~~~~~~wSp---DG~~i~ 307 (429)
T PRK01742 255 FS-------PDGS---RLAFASSKDGVLNIYVMGANG--------------GTPSQLTSGAGNNTEPSWSP---DGQSIL 307 (429)
T ss_pred EC-------CCCC---EEEEEEecCCcEEEEEEECCC--------------CCeEeeccCCCCcCCEEECC---CCCEEE
Confidence 99 8883 344433 47777777665322 12344556677788999999 999776
Q ss_pred EEE-cCCcEEEEEcCCC-ceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCC
Q 001391 152 IGC-SDNSIRVWDISNS-SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (1088)
Q Consensus 152 sgs-~Dg~V~iWd~~~~-~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~ 229 (1088)
..+ .++..+||++... .....+ .+.. +... .+|++..|+..+.++ +.+||+.
T Consensus 308 f~s~~~g~~~I~~~~~~~~~~~~l-~~~~---~~~~---~SpDG~~ia~~~~~~-i~~~Dl~------------------ 361 (429)
T PRK01742 308 FTSDRSGSPQVYRMSASGGGASLV-GGRG---YSAQ---ISADGKTLVMINGDN-VVKQDLT------------------ 361 (429)
T ss_pred EEECCCCCceEEEEECCCCCeEEe-cCCC---CCcc---CCCCCCEEEEEcCCC-EEEEECC------------------
Confidence 554 5788899987542 222222 2221 2333 378999988877655 5558887
Q ss_pred CCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCc
Q 001391 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA 309 (1088)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~ 309 (1088)
++........+ ....+.|+|+|++++.++.++.+.+|.+.... ..... .+.+|.+
T Consensus 362 ---------------~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~------G~~~~--~l~~~~g 416 (429)
T PRK01742 362 ---------------SGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSAD------GRFKA--RLPGSDG 416 (429)
T ss_pred ---------------CCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECC------CCceE--EccCCCC
Confidence 22222111122 23567899999999999999988888764311 12222 5667777
Q ss_pred ceEEEEECC
Q 001391 310 RVWDCCLTD 318 (1088)
Q Consensus 310 ~I~~v~~~~ 318 (1088)
.+...+|++
T Consensus 417 ~~~~p~wsp 425 (429)
T PRK01742 417 QVKFPAWSP 425 (429)
T ss_pred CCCCcccCC
Confidence 788888874
No 222
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=7.9e-09 Score=107.91 Aligned_cols=210 Identities=15% Similarity=0.178 Sum_probs=132.4
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCC
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~ 97 (1088)
-++..++++ +- --.+.+++.|..|+|||-++ ++...++......|.+++|. |.+. .-++++-.+
T Consensus 99 ~dlr~~aWh--qH---~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawR-------Plsa---selavgCr~ 162 (445)
T KOG2139|consen 99 IDLRGVAWH--QH---IIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWR-------PLSA---SELAVGCRA 162 (445)
T ss_pred cceeeEeec--hh---hhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEec-------cCCc---ceeeeeecc
Confidence 456778888 53 02333344589999999766 66666665444469999999 4443 566676678
Q ss_pred EEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc-CCcEEEEEcCCCceEEEeccC
Q 001391 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNSSIILEVHSP 176 (1088)
Q Consensus 98 ~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~-Dg~V~iWd~~~~~~~~~~~~~ 176 (1088)
-|.||..+......-...- ...-...+...++| ..|++++|.+ ||..+++++- |..|+|||..++..+.-....
T Consensus 163 gIciW~~s~tln~~r~~~~-~s~~~~qvl~~pgh-~pVtsmqwn~---dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g 237 (445)
T KOG2139|consen 163 GICIWSDSRTLNANRNIRM-MSTHHLQVLQDPGH-NPVTSMQWNE---DGTILVTASFGSSSIMIWDPDTGQKIPLIPKG 237 (445)
T ss_pred eeEEEEcCccccccccccc-ccccchhheeCCCC-ceeeEEEEcC---CCCEEeecccCcceEEEEcCCCCCcccccccC
Confidence 8999998743311100000 00001123344566 6899999999 9999999874 778999999998765443211
Q ss_pred CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCC
Q 001391 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (1088)
Q Consensus 177 ~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 256 (1088)
.+ -+++ ...+||+.++.+++-|+..++|.... .-.... -.-..
T Consensus 238 lg--g~sl--LkwSPdgd~lfaAt~davfrlw~e~q--------------------------------~wt~er-w~lgs 280 (445)
T KOG2139|consen 238 LG--GFSL--LKWSPDGDVLFAATCDAVFRLWQENQ--------------------------------SWTKER-WILGS 280 (445)
T ss_pred CC--ceee--EEEcCCCCEEEEecccceeeeehhcc--------------------------------cceecc-eeccC
Confidence 11 1121 12379999999999999999997550 111111 11233
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 001391 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVR 286 (1088)
Q Consensus 257 ~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~ 286 (1088)
+.|....|+|+|++|+-+.. +.-++|.+.
T Consensus 281 grvqtacWspcGsfLLf~~s-gsp~lysl~ 309 (445)
T KOG2139|consen 281 GRVQTACWSPCGSFLLFACS-GSPRLYSLT 309 (445)
T ss_pred CceeeeeecCCCCEEEEEEc-CCceEEEEe
Confidence 48999999999998755433 233445443
No 223
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.17 E-value=2.3e-09 Score=111.27 Aligned_cols=227 Identities=17% Similarity=0.229 Sum_probs=161.1
Q ss_pred CEEEEEe-CCeEEEEE-CCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCC
Q 001391 36 PFLLAGS-GSQVLLYD-LEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNS 112 (1088)
Q Consensus 36 ~~laag~-d~~I~vwd-~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~ 112 (1088)
.-+.+.+ |.+++||- ..+|+.-..+......++..+.+. ++. ..|.+ ...+++.-+.+...-
T Consensus 37 ~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~-------~e~----~~L~vg~~ngtvtefs~sedf---- 101 (404)
T KOG1409|consen 37 EGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYV-------SES----RRLYVGQDNGTVTEFALSEDF---- 101 (404)
T ss_pred CCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeee-------ccc----eEEEEEEecceEEEEEhhhhh----
Confidence 3355544 79999995 345555445554445578888888 554 44444 457899888876421
Q ss_pred CCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec--cCCceeEEEEeeecCC
Q 001391 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH--SPERCLLYSMKLWGDN 190 (1088)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~--~~~~~~~~s~~~~~~s 190 (1088)
-+....+.+..|...|..+-|+. ....+++.+.|..+.---.+.+..+.... ....+..+.
T Consensus 102 -------nkm~~~r~~~~h~~~v~~~if~~---~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d------- 164 (404)
T KOG1409|consen 102 -------NKMTFLKDYLAHQARVSAIVFSL---THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFD------- 164 (404)
T ss_pred -------hhcchhhhhhhhhcceeeEEecC---CceeEEEeccccceEEEeeccCCcccceEeeccCCCCcee-------
Confidence 02456677788999999999988 77899999988876655555554433221 111111111
Q ss_pred CCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCE
Q 001391 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK 270 (1088)
Q Consensus 191 ~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~ 270 (1088)
-.+...|...|.|.+-.+. +.....+.++.+|.+.+.+++|.|..+.
T Consensus 165 --~~~~fvGd~~gqvt~lr~~-------------------------------~~~~~~i~~~~~h~~~~~~l~Wd~~~~~ 211 (404)
T KOG1409|consen 165 --ALYAFVGDHSGQITMLKLE-------------------------------QNGCQLITTFNGHTGEVTCLKWDPGQRL 211 (404)
T ss_pred --eEEEEecccccceEEEEEe-------------------------------ecCCceEEEEcCcccceEEEEEcCCCcE
Confidence 1144556666777766665 1145678889999999999999999999
Q ss_pred EEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCC
Q 001391 271 LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSD 336 (1088)
Q Consensus 271 l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~ 336 (1088)
+.+|..|..+.+||+...+. +. ..+++|...|..++.. -..++++++||.|.+|+.+
T Consensus 212 LfSg~~d~~vi~wdigg~~g--------~~-~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 212 LFSGASDHSVIMWDIGGRKG--------TA-YELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred EEeccccCceEEEeccCCcc--------ee-eeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 99999999999999987532 22 4889999999888876 5789999999999999983
No 224
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=2.7e-09 Score=112.75 Aligned_cols=268 Identities=14% Similarity=0.151 Sum_probs=186.0
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEe-----eeCCcceEEEEecccccccCCCccceeeEE
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQ-----VFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~-----~~~~~~V~~i~~s~~~~~~~~d~~~~~~~l 91 (1088)
..|++++|- -+ +....+.... +..+..++.....+..... ......|.+++.. |+ .++
T Consensus 56 ~ris~l~~~--~d--~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--------dg----~Li 119 (412)
T KOG3881|consen 56 DRISSLLFG--VD--GETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--------DG----TLI 119 (412)
T ss_pred hhhhhheee--cC--CceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--------CC----EEE
Confidence 447777777 43 2245566653 5667777766655544431 1122357777764 54 788
Q ss_pred EEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcC--CcEEEEEcCCCce
Q 001391 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD--NSIRVWDISNSSI 169 (1088)
Q Consensus 92 a~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~D--g~V~iWd~~~~~~ 169 (1088)
++-++|.+.+|..+.+.... .....+..+ ..+..|.-+| .+...+|+||.. +.+.+||+++.+.
T Consensus 120 tc~~sG~l~~~~~k~~d~hs-----------s~l~~la~g-~g~~~~r~~~--~~p~Iva~GGke~~n~lkiwdle~~~q 185 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHS-----------SKLIKLATG-PGLYDVRQTD--TDPYIVATGGKENINELKIWDLEQSKQ 185 (412)
T ss_pred EEecCCcEEEEeccCCcccc-----------ccceeeecC-CceeeeccCC--CCCceEecCchhcccceeeeeccccee
Confidence 88899999999998543111 111122222 3456666665 234567779988 8899999999887
Q ss_pred EEEeccCCc--------eeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecc
Q 001391 170 ILEVHSPER--------CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1088)
Q Consensus 170 ~~~~~~~~~--------~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 241 (1088)
+.+.+...+ -...++.|...++ ...+|+++.-+.+++||.+
T Consensus 186 iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~-~~~fat~T~~hqvR~YDt~------------------------------ 234 (412)
T KOG3881|consen 186 IWSAKNVPNDRLGLRVPVWITDIRFLEGSP-NYKFATITRYHQVRLYDTR------------------------------ 234 (412)
T ss_pred eeeccCCCCccccceeeeeeccceecCCCC-CceEEEEecceeEEEecCc------------------------------
Confidence 777654322 1223455554433 6789999999999999988
Q ss_pred cccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC--C
Q 001391 242 QQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--S 319 (1088)
Q Consensus 242 ~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~--~ 319 (1088)
...+++..|.--+.+|.++...|++.+++++..-+.+..+|++.++. .. ..+.+-.+.|.++..++ .
T Consensus 235 --~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl--------~g-~~~kg~tGsirsih~hp~~~ 303 (412)
T KOG3881|consen 235 --HQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL--------LG-CGLKGITGSIRSIHCHPTHP 303 (412)
T ss_pred --ccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee--------ec-cccCCccCCcceEEEcCCCc
Confidence 25678888888899999999999999999999999999999998633 33 25778889999999995 5
Q ss_pred EEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCC
Q 001391 320 FIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL 359 (1088)
Q Consensus 320 ~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~d 359 (1088)
+++++|-|+.+||+|+ +.+++....-.. .+++|.+.++
T Consensus 304 ~las~GLDRyvRIhD~ktrkll~kvYvKs--~lt~il~~~~ 342 (412)
T KOG3881|consen 304 VLASCGLDRYVRIHDIKTRKLLHKVYVKS--RLTFILLRDD 342 (412)
T ss_pred eEEeeccceeEEEeecccchhhhhhhhhc--cccEEEecCC
Confidence 9999999999999999 545555433222 2566666543
No 225
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=2.7e-09 Score=112.78 Aligned_cols=255 Identities=14% Similarity=0.177 Sum_probs=167.7
Q ss_pred CcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEeccc
Q 001391 65 GIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (1088)
Q Consensus 65 ~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~ 144 (1088)
..+|..++|- .|++ .+.+++...+..+....+...... + ..............|..++..
T Consensus 55 ~~ris~l~~~-------~d~~-tevl~~r~~~~~~~~~~~~E~~~~-----s----~~~~~~~~~l~~~~I~gl~~~--- 114 (412)
T KOG3881|consen 55 LDRISSLLFG-------VDGE-TEVLNARSADDDLPKFVIEEFEIS-----S----SLDDAKTVSLGTKSIKGLKLA--- 114 (412)
T ss_pred hhhhhhheee-------cCCc-eeEeeccccCcccccccccCCccc-----c----ccccccccccccccccchhhc---
Confidence 3467788886 3332 124444456777777777643311 1 011223344555677777764
Q ss_pred CCCCEEEEEEcCCcEEEEEcCCCc----eEEEeccCCceeEEEEeeecCCCCCcEEEEEecC--CeEEEEEeccCccccC
Q 001391 145 NGNRSLAIGCSDNSIRVWDISNSS----IILEVHSPERCLLYSMKLWGDNLEALRIASGTIY--NEIIVWKVDWEHVAPL 218 (1088)
Q Consensus 145 ~d~~~lasgs~Dg~V~iWd~~~~~----~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d--g~I~vwd~~~~~~~~~ 218 (1088)
| ..|++|-.+|.+.+|....+. .+..+..+ ..++.+.-+ ..+...+++|+.. ..+.+||++..
T Consensus 115 -d-g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g--~g~~~~r~~--~~~p~Iva~GGke~~n~lkiwdle~~----- 183 (412)
T KOG3881|consen 115 -D-GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG--PGLYDVRQT--DTDPYIVATGGKENINELKIWDLEQS----- 183 (412)
T ss_pred -C-CEEEEEecCCcEEEEeccCCccccccceeeecC--CceeeeccC--CCCCceEecCchhcccceeeeecccc-----
Confidence 3 467788889999999998443 22222222 223344332 2334577789999 89999999811
Q ss_pred CCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCC--CCEEEEEECCCcEEEEEcCCCcccCCCCc
Q 001391 219 LNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC--GSKLVSVSDDRSARIWEVRAEYWKDSDSI 296 (1088)
Q Consensus 219 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~--g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~ 296 (1088)
-++|....-..-...+ .-.-+++++.|.+. ...|++++.-+.+|+||.+.++
T Consensus 184 ------------------~qiw~aKNvpnD~L~L-rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR------- 237 (412)
T KOG3881|consen 184 ------------------KQIWSAKNVPNDRLGL-RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR------- 237 (412)
T ss_pred ------------------eeeeeccCCCCccccc-eeeeeeccceecCCCCCceEEEEecceeEEEecCcccC-------
Confidence 2222221100000000 01246778899887 7899999999999999999764
Q ss_pred eeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEE-EcccCCCCeEEEEEcCCCCEEEEEeCCCCE
Q 001391 297 EEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAI 372 (1088)
Q Consensus 297 ~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~-~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I 372 (1088)
+++. .+.--..+|+++... +++|++|..-|.+..||. .++.+.. +++..| .|.+|..+|..++|+++|-|..+
T Consensus 238 RPV~--~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyv 314 (412)
T KOG3881|consen 238 RPVA--QFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYV 314 (412)
T ss_pred ccee--EeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeE
Confidence 3443 222334567776665 789999999999999999 5566555 788888 79999999999999999999999
Q ss_pred EEEEcCC
Q 001391 373 KVHQFQA 379 (1088)
Q Consensus 373 ~iwd~~~ 379 (1088)
||||+++
T Consensus 315 RIhD~kt 321 (412)
T KOG3881|consen 315 RIHDIKT 321 (412)
T ss_pred EEeeccc
Confidence 9999965
No 226
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=6.9e-09 Score=114.35 Aligned_cols=281 Identities=15% Similarity=0.154 Sum_probs=180.7
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe--CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~--d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~ 93 (1088)
+...-+.|..+ || |+|+++.+ -+.|+|||+..-.+ .|.-|-...+..+.+.. .|- ...+..
T Consensus 50 ~p~ast~ik~s--~D----GqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLs------DD~---SK~v~L 112 (703)
T KOG2321|consen 50 MPTASTRIKVS--PD----GQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILS------DDY---SKSVFL 112 (703)
T ss_pred CccccceeEec--CC----CcEEEEecccCCceEEEEccccee--eeeecccccceeEEEec------cch---hhheEe
Confidence 34556789999 99 88887744 49999999886433 44433332343333320 221 144555
Q ss_pred ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEe
Q 001391 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1088)
Q Consensus 94 ~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~ 173 (1088)
-.|++|.+..-... .+ -.. -...=.+++++. -..-|++++....|.-.+++.|..+..+
T Consensus 113 ~~DR~IefHak~G~-----hy----------~~R---IP~~GRDm~y~~---~scDly~~gsg~evYRlNLEqGrfL~P~ 171 (703)
T KOG2321|consen 113 QNDRTIEFHAKYGR-----HY----------RTR---IPKFGRDMKYHK---PSCDLYLVGSGSEVYRLNLEQGRFLNPF 171 (703)
T ss_pred ecCceeeehhhcCe-----ee----------eee---cCcCCccccccC---CCccEEEeecCcceEEEEcccccccccc
Confidence 56777766543210 00 000 011123455554 2223445555667888999999888776
Q ss_pred ccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe
Q 001391 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1088)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1088)
..... .++++.. ++...+|++|+.+|.|-.||.++....+..+ ......
T Consensus 172 ~~~~~-~lN~v~i---n~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~---------------------------~~~~v~ 220 (703)
T KOG2321|consen 172 ETDSG-ELNVVSI---NEEHGLLACGTEDGVVEFWDPRDKSRVGTLD---------------------------AASSVN 220 (703)
T ss_pred ccccc-cceeeee---cCccceEEecccCceEEEecchhhhhheeee---------------------------cccccC
Confidence 64432 2344443 4556799999999999999998433322111 001112
Q ss_pred CCC-----CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC----CCEEEEE
Q 001391 254 GHE-----GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT----DSFIITA 324 (1088)
Q Consensus 254 gh~-----~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~----~~~l~sg 324 (1088)
.|. ..|+++.|+.+|-.++.|..+|.|.|||++..+. +- ..-.+...+|..+.|. .+.++|.
T Consensus 221 s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--------l~-~kdh~~e~pi~~l~~~~~~~q~~v~S~ 291 (703)
T KOG2321|consen 221 SHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--------LL-VKDHGYELPIKKLDWQDTDQQNKVVSM 291 (703)
T ss_pred CCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc--------ee-ecccCCccceeeecccccCCCceEEec
Confidence 233 3499999999999999999999999999998643 21 1223334567788885 2455554
Q ss_pred eCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 325 GEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 325 ~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
....++|||- +|+....+..-.. +..+++-|++.+++++-.++.+..|=+
T Consensus 292 -Dk~~~kiWd~~~Gk~~asiEpt~~--lND~C~~p~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 292 -DKRILKIWDECTGKPMASIEPTSD--LNDFCFVPGSGMFFTANESSKMHTYYI 342 (703)
T ss_pred -chHHhhhcccccCCceeeccccCC--cCceeeecCCceEEEecCCCcceeEEc
Confidence 3568999999 8998888876553 899999999999999998887777755
No 227
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.14 E-value=7.9e-10 Score=120.77 Aligned_cols=212 Identities=16% Similarity=0.141 Sum_probs=139.3
Q ss_pred CceEEecCCCc----------ee-eeeEEEEEeccCCCCCCCCEEEEEeC-CeEEEEECCCCeeEEEEe---eeCCcceE
Q 001391 5 DLSEWRLDVGQ----------YL-GEISALCFVHLPSHLSSLPFLLAGSG-SQVLLYDLEAGTLIRPFQ---VFHGIRLH 69 (1088)
Q Consensus 5 ~i~iWdl~~g~----------~~-~~V~~v~fs~~pd~~~~~~~laag~d-~~I~vwd~~tg~~~~~~~---~~~~~~V~ 69 (1088)
.+.+|++..+. +. ..-+|-+|.+.++ ...+--|+.|-+ |.|++.|....+..+.|. .....+|.
T Consensus 145 ~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a-~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT 223 (636)
T KOG2394|consen 145 ELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTA-TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVT 223 (636)
T ss_pred eEEEEEccCcchhccchhhhcccCCCCceeccccccc-CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceE
Confidence 36777777433 11 1133566642122 111456677775 899999976522211121 12235799
Q ss_pred EEEecccccccCCCccceeeEEEEECCCEEEEEEeccCC-CCCCCCCC----cccc--------ccceeeeccCCCCcEE
Q 001391 70 GISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFEL-SPNSQYQP----ETCV--------NLSLVQSLPRLSHWVF 136 (1088)
Q Consensus 70 ~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~-~~~~~~~~----~~~~--------~~~~~~~l~~h~~~I~ 136 (1088)
++.|.|. .++ ..+++..++.+.+||.+... .....++. +... .-.++..+.--.+.|+
T Consensus 224 ~ikWvpg-----~~~----~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in 294 (636)
T KOG2394|consen 224 CIKWVPG-----SDS----LFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSIN 294 (636)
T ss_pred EEEEEeC-----CCc----eEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccc
Confidence 9999854 443 67777889999999875321 11111111 1000 1122333333346899
Q ss_pred EEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccc
Q 001391 137 DVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVA 216 (1088)
Q Consensus 137 ~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~ 216 (1088)
..+|+| ||++||+.+.||.+||+|..+.+++..++.--+. +.++++ +||+.+|++|++|.-|.||.+.
T Consensus 295 ~f~FS~---DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGG-LLCvcW---SPDGKyIvtGGEDDLVtVwSf~----- 362 (636)
T KOG2394|consen 295 EFAFSP---DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGG-LLCVCW---SPDGKYIVTGGEDDLVTVWSFE----- 362 (636)
T ss_pred ceeEcC---CCceEEEEecCceEEEeeccHHHHHHHHHhhccc-eEEEEE---cCCccEEEecCCcceEEEEEec-----
Confidence 999999 9999999999999999999988776655533332 334444 6999999999999999999998
Q ss_pred cCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcC
Q 001391 217 PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS 266 (1088)
Q Consensus 217 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp 266 (1088)
..+.+.+-.||+.+|..|+|.|
T Consensus 363 ----------------------------erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 363 ----------------------------ERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ----------------------------cceEEEeccccccceeeEeecc
Confidence 7788888899999999999984
No 228
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=2.1e-08 Score=110.86 Aligned_cols=301 Identities=17% Similarity=0.158 Sum_probs=184.7
Q ss_pred CCCceEEecCCCc-----eeeeeEEEEEeccCCCCCCCCEEEE-------Ee----CCeEEEEECCCCeeEEEEeeeCCc
Q 001391 3 KKDLSEWRLDVGQ-----YLGEISALCFVHLPSHLSSLPFLLA-------GS----GSQVLLYDLEAGTLIRPFQVFHGI 66 (1088)
Q Consensus 3 d~~i~iWdl~~g~-----~~~~V~~v~fs~~pd~~~~~~~laa-------g~----d~~I~vwd~~tg~~~~~~~~~~~~ 66 (1088)
+..+.|.+..++. ....+.++.|| |- +.||.+ +. ...+++|+++++.....++....+
T Consensus 54 ~~~v~i~~~~~~~~~lt~~~~~~~~L~fS--P~----g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~ 127 (566)
T KOG2315|consen 54 NQVVKVFEIATLKVVLCVELKKTYDLLFS--PK----GNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQN 127 (566)
T ss_pred CCeEEEEEccCCcEEEEeccceeeeeeec--cc----ccccccccccccccCCCCCCCceeeeeeccceehhheehhhhc
Confidence 4557788877773 22368899999 98 788876 11 257889999997776666654332
Q ss_pred ceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d 146 (1088)
-+..+|+ .|. .+.+---.+.+.+|++.... ...+. -|...|....++| .
T Consensus 128 -~W~~qfs-------~dE----sl~arlv~nev~f~~~~~f~--------------~~~~k--l~~~~i~~f~lSp---g 176 (566)
T KOG2315|consen 128 -GWVPQFS-------IDE----SLAARLVSNEVQFYDLGSFK--------------TIQHK--LSVSGITMLSLSP---G 176 (566)
T ss_pred -Ccccccc-------cch----hhhhhhhcceEEEEecCCcc--------------ceeee--eeccceeeEEecC---C
Confidence 2788888 552 33333457899999987422 11222 3567899999999 4
Q ss_pred C--CEEEE-----EEcCCcEEEEEcCCCceEEEeccCC--ceeEEEEeeecCCCCCcEE-EEEecCCeEEEEEeccCccc
Q 001391 147 N--RSLAI-----GCSDNSIRVWDISNSSIILEVHSPE--RCLLYSMKLWGDNLEALRI-ASGTIYNEIIVWKVDWEHVA 216 (1088)
Q Consensus 147 ~--~~las-----gs~Dg~V~iWd~~~~~~~~~~~~~~--~~~~~s~~~~~~s~~~~~l-~sg~~dg~I~vwd~~~~~~~ 216 (1088)
+ ..+|+ +|.-+.|+||.......-..+.... .+.-..+.+-.. ..+.++ ++...|.+=.
T Consensus 177 p~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~-gt~LLvLastdVDktn~---------- 245 (566)
T KOG2315|consen 177 PEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKL-GTALLVLASTDVDKTNA---------- 245 (566)
T ss_pred CCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccC-CceEEEEEEEeecCCCc----------
Confidence 3 35555 4667789999886332221111111 111112222111 122333 3333332100
Q ss_pred cCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEE--EECCCcEEEEEcCCCcccCCC
Q 001391 217 PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS--VSDDRSARIWEVRAEYWKDSD 294 (1088)
Q Consensus 217 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s--~s~Dg~v~iWd~~~~~~~~~~ 294 (1088)
...+..++.+...+ .......+ ..+++|.++.|+|+++-++. |-.--.+.|+|++..-
T Consensus 246 -------------SYYGEq~Lyll~t~-g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~----- 305 (566)
T KOG2315|consen 246 -------------SYYGEQTLYLLATQ-GESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP----- 305 (566)
T ss_pred -------------cccccceEEEEEec-CceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE-----
Confidence 00011222222221 12222222 34799999999999987665 4456788999988741
Q ss_pred CceeeeceeeeccCcceEEEEEC--CCEEEEEeCC---CcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeC
Q 001391 295 SIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF 368 (1088)
Q Consensus 295 ~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D---g~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~ 368 (1088)
.+.-.+++-.++.|+ +++|+.+|.+ |.+-|||+ +.+++..+.... -+-+.|+|||.+++|+..
T Consensus 306 --------v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~---tt~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 306 --------VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN---TTVFEWSPDGEYFLTATT 374 (566)
T ss_pred --------eEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC---ceEEEEcCCCcEEEEEec
Confidence 223334555677887 7888888765 78999999 767777776554 356789999999998874
Q ss_pred ------CCCEEEEEcCCCCC
Q 001391 369 ------DSAIKVHQFQAFLP 382 (1088)
Q Consensus 369 ------Dg~I~iwd~~~~~~ 382 (1088)
|+.++||++.+..+
T Consensus 375 aPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 375 APRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred cccEEecCCeEEEEecCcee
Confidence 78999999987544
No 229
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.10 E-value=3.3e-10 Score=121.60 Aligned_cols=190 Identities=16% Similarity=0.219 Sum_probs=149.9
Q ss_pred EEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCc
Q 001391 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (1088)
Q Consensus 135 I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~ 214 (1088)
-+.+.++. +|.+|+.|+.-|.|-.+|..++.+...+..-+ .+..+.|. .+..++|+ .....+.|||-.
T Consensus 132 PY~~~ytr---nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E--tv~Dv~~L---Hneq~~AV-AQK~y~yvYD~~--- 199 (545)
T KOG1272|consen 132 PYHLDYTR---NGRHLLLGGRKGHLAAFDWVTKKLHFEINVME--TVRDVTFL---HNEQFFAV-AQKKYVYVYDNN--- 199 (545)
T ss_pred CeeeeecC---CccEEEecCCccceeeeecccceeeeeeehhh--hhhhhhhh---cchHHHHh-hhhceEEEecCC---
Confidence 46688888 99999999999999999999999888876433 24455543 23344444 456778888865
Q ss_pred cccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCC
Q 001391 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD 294 (1088)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~ 294 (1088)
+..++.++.| ..|..+.|.|.-=+|++++..|.++--|+..++.
T Consensus 200 -------------------------------GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl---- 243 (545)
T KOG1272|consen 200 -------------------------------GTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKL---- 243 (545)
T ss_pred -------------------------------CcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhh----
Confidence 5556666655 5589999999988999999999999999999754
Q ss_pred CceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCC
Q 001391 295 SIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSA 371 (1088)
Q Consensus 295 ~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~ 371 (1088)
+. .+..-.+++..++-+ +..+-+|..+|+|.+|.. ..+++..+-.|.+ +|.+|++.++|++++|.|.|..
T Consensus 244 ----Va--~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~ 316 (545)
T KOG1272|consen 244 ----VA--SIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRK 316 (545)
T ss_pred ----hH--HHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccc
Confidence 22 233334455555555 567889999999999999 6678888889999 8999999999999999999999
Q ss_pred EEEEEcCC
Q 001391 372 IKVHQFQA 379 (1088)
Q Consensus 372 I~iwd~~~ 379 (1088)
++|||++.
T Consensus 317 ~kIWDlR~ 324 (545)
T KOG1272|consen 317 VKIWDLRN 324 (545)
T ss_pred eeEeeecc
Confidence 99999964
No 230
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.10 E-value=4.7e-08 Score=100.82 Aligned_cols=313 Identities=13% Similarity=0.073 Sum_probs=184.8
Q ss_pred ceEEecCCCc------eeeeeEEEEEeccCCCCCCCCEEEEEe--CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccc
Q 001391 6 LSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFIN 77 (1088)
Q Consensus 6 i~iWdl~~g~------~~~~V~~v~fs~~pd~~~~~~~laag~--d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~ 77 (1088)
+-|-|.++-+ ....|.-+.+. -| .-+++++- ++.|++|++...+-..++..... ++..+.||
T Consensus 31 lviRd~~tlq~~qlf~cldki~yieW~--ad----s~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~a-gls~~~WS--- 100 (447)
T KOG4497|consen 31 LVIRDSETLQLHQLFLCLDKIVYIEWK--AD----SCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQA-GLSSISWS--- 100 (447)
T ss_pred EEEeccchhhHHHHHHHHHHhhheeee--cc----ceeeeeeeeccceEEEEEeecceeEEEeccCCC-cceeeeEC---
Confidence 4455555544 23556677787 66 56677655 69999999998888888886444 79999999
Q ss_pred cccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcC
Q 001391 78 CTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD 156 (1088)
Q Consensus 78 ~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~D 156 (1088)
|||+ .+|..+. +-.|.||.+.+.. ...+ +--...+..++|+| ||++.+.++.-
T Consensus 101 ----Pdgr---hiL~tseF~lriTVWSL~t~~-------------~~~~---~~pK~~~kg~~f~~---dg~f~ai~sRr 154 (447)
T KOG4497|consen 101 ----PDGR---HILLTSEFDLRITVWSLNTQK-------------GYLL---PHPKTNVKGYAFHP---DGQFCAILSRR 154 (447)
T ss_pred ----CCcc---eEeeeecceeEEEEEEeccce-------------eEEe---cccccCceeEEECC---CCceeeeeecc
Confidence 8883 4444444 8999999998643 1111 11123456677777 77766655431
Q ss_pred ------------------------------------CcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEe
Q 001391 157 ------------------------------------NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (1088)
Q Consensus 157 ------------------------------------g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~ 200 (1088)
+.+-+||-.-...+...+.. ..+.++..+|.+.+++.|+
T Consensus 155 DCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~-----lG~k~v~wsP~~qflavGs 229 (447)
T KOG4497|consen 155 DCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERG-----LGLKFVEWSPCNQFLAVGS 229 (447)
T ss_pred cHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeec-----cceeEEEeccccceEEeec
Confidence 11223332221111111111 1233444478899999999
Q ss_pred cCCeEEEEEeccCccccCCC-------------------------CCCCccCCCCCC--CCceeEecccccceeeeEEEe
Q 001391 201 IYNEIIVWKVDWEHVAPLLN-------------------------SPEGNHAHGSSS--DFKCFKLQDQQHTAVNLFRLV 253 (1088)
Q Consensus 201 ~dg~I~vwd~~~~~~~~~~~-------------------------~~~~~s~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 253 (1088)
.|+.++|-+--+-+.-++.. +...+.+..... ....-.++..+.....++.++
T Consensus 230 yD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lk 309 (447)
T KOG4497|consen 230 YDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLK 309 (447)
T ss_pred cchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeeccc
Confidence 99999885533211111100 000000000000 000001122222222333333
Q ss_pred ------CCCCCEEEEEEcCCCCEEEEEEC--CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC--CEEEE
Q 001391 254 ------GHEGSIFRIEWSSCGSKLVSVSD--DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIIT 323 (1088)
Q Consensus 254 ------gh~~~V~~v~~sp~g~~l~s~s~--Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~--~~l~s 323 (1088)
...-.+..++|++|..+++|-.+ -..+.+||++..+. ........+|....|++ ..++.
T Consensus 310 p~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l-----------~avLiQk~piraf~WdP~~prL~v 378 (447)
T KOG4497|consen 310 PPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKL-----------HAVLIQKHPIRAFEWDPGRPRLVV 378 (447)
T ss_pred CCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhh-----------hhhhhhccceeEEEeCCCCceEEE
Confidence 23445778999999999988644 46899999988543 13333445788899983 34555
Q ss_pred EeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCC
Q 001391 324 AGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSA 371 (1088)
Q Consensus 324 g~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~ 371 (1088)
+.....+++|...|..........- .|..+.|+.+|..++..+.|..
T Consensus 379 ctg~srLY~W~psg~~~V~vP~~GF-~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 379 CTGKSRLYFWAPSGPRVVGVPKKGF-NIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred EcCCceEEEEcCCCceEEecCCCCc-eeeeEEecCCCcEEEEEcCCce
Confidence 5555669999998754444443333 6999999999999999998864
No 231
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.07 E-value=1.7e-07 Score=106.27 Aligned_cols=271 Identities=10% Similarity=0.038 Sum_probs=161.5
Q ss_pred CCEEEEEe--CCeEEEEECCCCeeEEEEeeeCCcceE-EEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCC
Q 001391 35 LPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLH-GISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPN 111 (1088)
Q Consensus 35 ~~~laag~--d~~I~vwd~~tg~~~~~~~~~~~~~V~-~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~ 111 (1088)
+.++++.. ++.|.|.|..+.+.++++..... +| .+.|+ |||+ .+.++..|+.|.++|+..
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~--~h~~~~~s-------~Dgr---~~yv~~rdg~vsviD~~~----- 67 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGA--PHAGLKFS-------PDGR---YLYVANRDGTVSVIDLAT----- 67 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STT--EEEEEE-T-------T-SS---EEEEEETTSEEEEEETTS-----
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCC--ceeEEEec-------CCCC---EEEEEcCCCeEEEEECCc-----
Confidence 45565544 59999999999999999987443 45 46788 8884 666667799999999985
Q ss_pred CCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE-cCCcEEEEEcCCCceEEEeccCC------ceeEEEE
Q 001391 112 SQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISNSSIILEVHSPE------RCLLYSM 184 (1088)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs-~Dg~V~iWd~~~~~~~~~~~~~~------~~~~~s~ 184 (1088)
.+.+++++.- ..-.++++++ ||++++++. .++.+.++|.++.+.+.++.... ......+
T Consensus 68 ----------~~~v~~i~~G-~~~~~i~~s~---DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aI 133 (369)
T PF02239_consen 68 ----------GKVVATIKVG-GNPRGIAVSP---DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAI 133 (369)
T ss_dssp ----------SSEEEEEE-S-SEEEEEEE-----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEE
T ss_pred ----------ccEEEEEecC-CCcceEEEcC---CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeE
Confidence 3466666543 3468899999 999888764 68999999999999988875321 1112222
Q ss_pred eeecCCCCCc-EEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccccee-eeEEEeCCCCCEEEE
Q 001391 185 KLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV-NLFRLVGHEGSIFRI 262 (1088)
Q Consensus 185 ~~~~~s~~~~-~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~gh~~~V~~v 262 (1088)
.. ++... ++++--.-+.|.+-|.. ... ...............
T Consensus 134 v~---s~~~~~fVv~lkd~~~I~vVdy~---------------------------------d~~~~~~~~i~~g~~~~D~ 177 (369)
T PF02239_consen 134 VA---SPGRPEFVVNLKDTGEIWVVDYS---------------------------------DPKNLKVTTIKVGRFPHDG 177 (369)
T ss_dssp EE----SSSSEEEEEETTTTEEEEEETT---------------------------------TSSCEEEEEEE--TTEEEE
T ss_pred Ee---cCCCCEEEEEEccCCeEEEEEec---------------------------------cccccceeeeccccccccc
Confidence 11 34444 44554455777777766 111 122222344567789
Q ss_pred EEcCCCCEEEEE-ECCCcEEEEEcCCCcccCCCCceeeec--------eeeeccCc--ceEEEEECCCEEEEEeCCCcEE
Q 001391 263 EWSSCGSKLVSV-SDDRSARIWEVRAEYWKDSDSIEEVGS--------SVLYGHNA--RVWDCCLTDSFIITAGEDCTCR 331 (1088)
Q Consensus 263 ~~sp~g~~l~s~-s~Dg~v~iWd~~~~~~~~~~~~~~i~~--------~~~~~h~~--~I~~v~~~~~~l~sg~~Dg~i~ 331 (1088)
.|+|++++++.+ ..+..|-++|..+++. ...+.. ..-..|.. ++|...-.+...++.-....+.
T Consensus 178 ~~dpdgry~~va~~~sn~i~viD~~~~k~-----v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~ 252 (369)
T PF02239_consen 178 GFDPDGRYFLVAANGSNKIAVIDTKTGKL-----VALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVS 252 (369)
T ss_dssp EE-TTSSEEEEEEGGGTEEEEEETTTTEE-----EEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT
T ss_pred ccCcccceeeecccccceeEEEeeccceE-----EEEeeccccccccccccccCCCcceEEeeccccceecccccCCccc
Confidence 999999987664 5567899999888644 111110 01122322 3444443344443433344667
Q ss_pred EEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEE----eCCCCEEEEEcCC
Q 001391 332 VWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA----GFDSAIKVHQFQA 379 (1088)
Q Consensus 332 vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg----~~Dg~I~iwd~~~ 379 (1088)
+|+. +.+.++++....+ + .-+..+|+++++.+. ...++|.++|.++
T Consensus 253 v~d~~~wkvv~~I~~~G~-g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~t 303 (369)
T PF02239_consen 253 VHDDYAWKVVKTIPTQGG-G-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT 303 (369)
T ss_dssp -STTTBTSEEEEEE-SSS-S---EE--TT-SEEEEE-TT-SSHT-EEEEECCG
T ss_pred cchhhcCeEEEEEECCCC-c-ceeecCCCCccEEeeccCCCCCceEEEEECcC
Confidence 8887 7788888887655 5 677889999999888 4458999999864
No 232
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.06 E-value=6.4e-09 Score=108.06 Aligned_cols=223 Identities=13% Similarity=0.154 Sum_probs=159.1
Q ss_pred ccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEc-CCCceEEEeccCCceeEEEEeeecCCCCCcEEEEE
Q 001391 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDI-SNSSIILEVHSPERCLLYSMKLWGDNLEALRIASG 199 (1088)
Q Consensus 121 ~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~-~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg 199 (1088)
+..+.+.++||.+.|++...-| ...-+.+.+.|.++|||-- +.++.-..+.........++.+ ..+...|+.|
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~---~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y---~~e~~~L~vg 86 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIP---KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEY---VSESRRLYVG 86 (404)
T ss_pred chhhhhhhcCchhhhhhheecc---CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeee---eccceEEEEE
Confidence 3567889999999999999999 7778999999999999964 3444433333221222223333 3566788999
Q ss_pred ecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCc
Q 001391 200 TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRS 279 (1088)
Q Consensus 200 ~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~ 279 (1088)
-..|++.-+.+... . .+....+....|...|..+-|+-..+.+++++.|..
T Consensus 87 ~~ngtvtefs~sed----------------------------f-nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~ 137 (404)
T KOG1409|consen 87 QDNGTVTEFALSED----------------------------F-NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQ 137 (404)
T ss_pred EecceEEEEEhhhh----------------------------h-hhcchhhhhhhhhcceeeEEecCCceeEEEeccccc
Confidence 99999988876510 0 022334455678888899888888888888888876
Q ss_pred EEEEEcCCCccc---------------------------------CCCCceeeeceeeeccCcceEEEEEC--CCEEEEE
Q 001391 280 ARIWEVRAEYWK---------------------------------DSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA 324 (1088)
Q Consensus 280 v~iWd~~~~~~~---------------------------------~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg 324 (1088)
+.---.+.+... .......+ .++.+|...+.+++|. +..+.+|
T Consensus 138 ~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i--~~~~~h~~~~~~l~Wd~~~~~LfSg 215 (404)
T KOG1409|consen 138 FAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLI--TTFNGHTGEVTCLKWDPGQRLLFSG 215 (404)
T ss_pred eEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceE--EEEcCcccceEEEEEcCCCcEEEec
Confidence 643333222111 00001222 3677899999999998 6899999
Q ss_pred eCCCcEEEEcCCC--ceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCC
Q 001391 325 GEDCTCRVWGSDG--KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFL 381 (1088)
Q Consensus 325 ~~Dg~i~vWd~~~--~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~ 381 (1088)
.+|..+.+||+.+ .....+.+|.. .|..+...+--+.|.+++.||.|.+|+++...
T Consensus 216 ~~d~~vi~wdigg~~g~~~el~gh~~-kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 216 ASDHSVIMWDIGGRKGTAYELQGHND-KVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred cccCceEEEeccCCcceeeeeccchh-hhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 9999999999944 34556788888 49999888888899999999999999996543
No 233
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.04 E-value=6e-07 Score=101.86 Aligned_cols=295 Identities=14% Similarity=0.144 Sum_probs=167.1
Q ss_pred CCCCceEEecCCCceeee------e-EEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEe
Q 001391 2 GKKDLSEWRLDVGQYLGE------I-SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISC 73 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~~~~~------V-~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~ 73 (1088)
+++.|.+.|..+.+..+. + ..+.|+ || ++++.+.+ |+.|.++|+.+++.+++++... ...++++
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s--~D----gr~~yv~~rdg~vsviD~~~~~~v~~i~~G~--~~~~i~~ 85 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGAPHAGLKFS--PD----GRYLYVANRDGTVSVIDLATGKVVATIKVGG--NPRGIAV 85 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STTEEEEEE-T--T-----SSEEEEEETTSEEEEEETTSSSEEEEEE-SS--EEEEEEE
T ss_pred CCCEEEEEECCCCeEEEEEcCCCCceeEEEec--CC----CCEEEEEcCCCeEEEEECCcccEEEEEecCC--CcceEEE
Confidence 468899999998873322 2 346789 99 88888877 7999999999999999998733 4799999
Q ss_pred cccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccC-------CCCcEEEEEEecccC
Q 001391 74 NFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR-------LSHWVFDVCFLKVCN 145 (1088)
Q Consensus 74 s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~-------h~~~I~~v~f~p~~~ 145 (1088)
| +||+ .++++ ...+.+.++|.++ ++.++.+.. ...++..+..+|
T Consensus 86 s-------~DG~---~~~v~n~~~~~v~v~D~~t---------------le~v~~I~~~~~~~~~~~~Rv~aIv~s~--- 137 (369)
T PF02239_consen 86 S-------PDGK---YVYVANYEPGTVSVIDAET---------------LEPVKTIPTGGMPVDGPESRVAAIVASP--- 137 (369)
T ss_dssp ---------TTT---EEEEEEEETTEEEEEETTT-----------------EEEEEE--EE-TTTS---EEEEEE-S---
T ss_pred c-------CCCC---EEEEEecCCCceeEecccc---------------ccceeecccccccccccCCCceeEEecC---
Confidence 9 8883 33333 3489999999875 344444432 235788888888
Q ss_pred CCCEEEEEEcC-CcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEE-EecCCeEEEEEeccCccccCCCCCC
Q 001391 146 GNRSLAIGCSD-NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS-GTIYNEIIVWKVDWEHVAPLLNSPE 223 (1088)
Q Consensus 146 d~~~lasgs~D-g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~s-g~~dg~I~vwd~~~~~~~~~~~~~~ 223 (1088)
....++..-.| +.|-+-|....+.+..-........+...+ ++++.++++ ...++.|-++|..+
T Consensus 138 ~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~---dpdgry~~va~~~sn~i~viD~~~----------- 203 (369)
T PF02239_consen 138 GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGF---DPDGRYFLVAANGSNKIAVIDTKT----------- 203 (369)
T ss_dssp SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE----TTSSEEEEEEGGGTEEEEEETTT-----------
T ss_pred CCCEEEEEEccCCeEEEEEeccccccceeeeccccccccccc---CcccceeeecccccceeEEEeecc-----------
Confidence 77755555454 777777877654433222122223344443 577877655 55678899999882
Q ss_pred CccCCCCCCCCceeEecccccceeeeEEEe----CCCCCEEEEE-------Ec--CCCCEEEEEECCCcEEEEEcCCCcc
Q 001391 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRLV----GHEGSIFRIE-------WS--SCGSKLVSVSDDRSARIWEVRAEYW 290 (1088)
Q Consensus 224 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~----gh~~~V~~v~-------~s--p~g~~l~s~s~Dg~v~iWd~~~~~~ 290 (1088)
.+.+..+. .|...+..+- |. -.+...++.-....+.+|+....
T Consensus 204 ----------------------~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w-- 259 (369)
T PF02239_consen 204 ----------------------GKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW-- 259 (369)
T ss_dssp ----------------------TEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT--
T ss_pred ----------------------ceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcC--
Confidence 22222221 2333333321 11 11222222222234555666654
Q ss_pred cCCCCceeeeceeeeccCcceEEEEEC--CCEEEEE----eCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEE
Q 001391 291 KDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA----GEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLL 363 (1088)
Q Consensus 291 ~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg----~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l 363 (1088)
+.++ .+...... .-+..+ ..++... ....+|.++|. +.+.+.++....+..+..+.|+++|+.+
T Consensus 260 ------kvv~--~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v 330 (369)
T PF02239_consen 260 ------KVVK--TIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEV 330 (369)
T ss_dssp ------SEEE--EEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEE
T ss_pred ------eEEE--EEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEE
Confidence 3333 33333333 444445 3566655 45689999999 5566677755444358999999999966
Q ss_pred EEEeCC--CCEEEEEcCC
Q 001391 364 VTAGFD--SAIKVHQFQA 379 (1088)
Q Consensus 364 ~tg~~D--g~I~iwd~~~ 379 (1088)
.....+ +.|.++|..+
T Consensus 331 ~vS~~~~~~~i~v~D~~T 348 (369)
T PF02239_consen 331 WVSVWDGNGAIVVYDAKT 348 (369)
T ss_dssp EEEEE--TTEEEEEETTT
T ss_pred EEEEecCCCEEEEEECCC
Confidence 555443 3699999854
No 234
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=6.4e-08 Score=113.16 Aligned_cols=199 Identities=6% Similarity=0.077 Sum_probs=125.0
Q ss_pred ccCCCCcEEEEEEecccCCCCEEEEEE---cCCcEEEEEcCCCceEEE--eccCCceeEEEEeeecCCCCCcEEEEE-ec
Q 001391 128 LPRLSHWVFDVCFLKVCNGNRSLAIGC---SDNSIRVWDISNSSIILE--VHSPERCLLYSMKLWGDNLEALRIASG-TI 201 (1088)
Q Consensus 128 l~~h~~~I~~v~f~p~~~d~~~lasgs---~Dg~V~iWd~~~~~~~~~--~~~~~~~~~~s~~~~~~s~~~~~l~sg-~~ 201 (1088)
+..+...+.+.+|+| ||+.|+..+ .+..|.+|++.+++.... +..+.. ...+ +||+..|+.. +.
T Consensus 194 lt~~~~~~~~p~wSP---DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~----~~~~---SPDG~~La~~~~~ 263 (429)
T PRK03629 194 VHRSPQPLMSPAWSP---DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG----APAF---SPDGSKLAFALSK 263 (429)
T ss_pred eecCCCceeeeEEcC---CCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcC----CeEE---CCCCCEEEEEEcC
Confidence 334667899999999 999887654 245799999988764332 222222 2333 6889877754 44
Q ss_pred CC--eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC-C
Q 001391 202 YN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD-R 278 (1088)
Q Consensus 202 dg--~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D-g 278 (1088)
+| .|.+||+. ++. ...+..+...+....|+|||+.|+..+.+ +
T Consensus 264 ~g~~~I~~~d~~---------------------------------tg~-~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g 309 (429)
T PRK03629 264 TGSLNLYVMDLA---------------------------------SGQ-IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAG 309 (429)
T ss_pred CCCcEEEEEECC---------------------------------CCC-EEEccCCCCCcCceEECCCCCEEEEEeCCCC
Confidence 54 48888886 232 23344445567889999999998877764 4
Q ss_pred cEEEE--EcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC---CcEEEEcCCCceeEEEcccCCCCe
Q 001391 279 SARIW--EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSDGKQLKMIKEHIGRGI 351 (1088)
Q Consensus 279 ~v~iW--d~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D---g~i~vWd~~~~~~~~~~~h~~~~V 351 (1088)
...+| |+.++.. + .+..+........|+ +..|+..+.+ ..|.+||+.+.....+.... ..
T Consensus 310 ~~~Iy~~d~~~g~~------~-----~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~--~~ 376 (429)
T PRK03629 310 RPQVYKVNINGGAP------Q-----RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF--LD 376 (429)
T ss_pred CceEEEEECCCCCe------E-----EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC--CC
Confidence 44555 5554321 1 222233344567777 5677665543 35888998444445554322 24
Q ss_pred EEEEEcCCCCEEEEEeCCCC---EEEEEcCCCCCC
Q 001391 352 WRCLYDSLSSLLVTAGFDSA---IKVHQFQAFLPG 383 (1088)
Q Consensus 352 ~~l~~~~dg~~l~tg~~Dg~---I~iwd~~~~~~~ 383 (1088)
....|+|||+.|+..+.++. +.++++++...+
T Consensus 377 ~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~ 411 (429)
T PRK03629 377 ETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA 411 (429)
T ss_pred CCceECCCCCEEEEEEcCCCceEEEEEECCCCCeE
Confidence 56789999999999988765 566666554433
No 235
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=1.4e-07 Score=110.29 Aligned_cols=233 Identities=12% Similarity=0.041 Sum_probs=145.4
Q ss_pred eEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE---CCCEEEEEEeccCCCCCCCCCCccccc
Q 001391 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF---GEKRVKLFELNFELSPNSQYQPETCVN 121 (1088)
Q Consensus 45 ~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~---gd~~v~iw~l~~~~~~~~~~~~~~~~~ 121 (1088)
.|.+||...+.. ..+..+.. .+...+|| |||+ .++.++ ++..+.+|++..+.
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~-~~~~p~wS-------PDG~---~la~~s~~~g~~~i~i~dl~~G~------------- 234 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQ-PLMSPAWS-------PDGS---KLAYVTFESGRSALVIQTLANGA------------- 234 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCC-ceeeeEEc-------CCCC---EEEEEEecCCCcEEEEEECCCCC-------------
Confidence 799999875543 33433333 68999999 8883 333232 24578899987533
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEEEE-EcCC--cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEE
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS 198 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg-s~Dg--~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~s 198 (1088)
.+.+..+.++ +...+|+| ||+.|+.. +.++ .|.+||+.+++.......+. ......+ +|++..|+.
T Consensus 235 ~~~l~~~~~~---~~~~~~SP---DG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~--~~~~~~w---SPDG~~I~f 303 (429)
T PRK03629 235 VRQVASFPRH---NGAPAFSP---DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS--NNTEPTW---FPDSQNLAY 303 (429)
T ss_pred eEEccCCCCC---cCCeEECC---CCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCC--CcCceEE---CCCCCEEEE
Confidence 2334444444 44689999 99987754 4444 58899998876544332221 2233333 688887766
Q ss_pred Eec-CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC
Q 001391 199 GTI-YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277 (1088)
Q Consensus 199 g~~-dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D 277 (1088)
.+. ++...+|.+... .+ ....+..+........|+|||++++..+.+
T Consensus 304 ~s~~~g~~~Iy~~d~~-------------------------------~g-~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~ 351 (429)
T PRK03629 304 TSDQAGRPQVYKVNIN-------------------------------GG-APQRITWEGSQNQDADVSSDGKFMVMVSSN 351 (429)
T ss_pred EeCCCCCceEEEEECC-------------------------------CC-CeEEeecCCCCccCEEECCCCCEEEEEEcc
Confidence 554 455566654300 11 122333344456678999999998876543
Q ss_pred ---CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCc---EEEEcCCCceeEEEcccCCC
Q 001391 278 ---RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCT---CRVWGSDGKQLKMIKEHIGR 349 (1088)
Q Consensus 278 ---g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~---i~vWd~~~~~~~~~~~h~~~ 349 (1088)
..|.+||+.++.. +.+ .. ........|+ +..|+.++.++. +.+++++|+....+..|.+
T Consensus 352 ~g~~~I~~~dl~~g~~------~~L-----t~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~- 418 (429)
T PRK03629 352 GGQQHIAKQDLATGGV------QVL-----TD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDG- 418 (429)
T ss_pred CCCceEEEEECCCCCe------EEe-----CC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCC-
Confidence 3588899877533 222 11 1122345676 677888887764 6777888888888888877
Q ss_pred CeEEEEEcC
Q 001391 350 GIWRCLYDS 358 (1088)
Q Consensus 350 ~V~~l~~~~ 358 (1088)
.+...+|+|
T Consensus 419 ~~~~p~Wsp 427 (429)
T PRK03629 419 QVKFPAWSP 427 (429)
T ss_pred CcCCcccCC
Confidence 588888876
No 236
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.96 E-value=3.5e-05 Score=97.12 Aligned_cols=295 Identities=12% Similarity=0.179 Sum_probs=174.6
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEE----ECCCC--eeEEEEeeeCCcceEEEEecccccccCCCccceeeE
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLY----DLEAG--TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFE 90 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vw----d~~tg--~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~ 90 (1088)
+.|.++.|. ++ ..-|..+. +|.|.+. |..+. +++..+.. +|.+++|| ||. +.+
T Consensus 76 ~~ivs~~yl--~d----~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~----GI~a~~WS-------PD~---Ell 135 (928)
T PF04762_consen 76 DKIVSFQYL--AD----SESLCIALASGDIILVREDPDPDEDEIEIVGSVDS----GILAASWS-------PDE---ELL 135 (928)
T ss_pred CcEEEEEec--cC----CCcEEEEECCceEEEEEccCCCCCceeEEEEEEcC----cEEEEEEC-------CCc---CEE
Confidence 457777777 87 44455554 7888888 55443 34444443 79999999 776 366
Q ss_pred EEEECCCEEEEEEeccCCC----------------------CCCCCCCccccc-------cc----eeeeccCCCCcEEE
Q 001391 91 VALFGEKRVKLFELNFELS----------------------PNSQYQPETCVN-------LS----LVQSLPRLSHWVFD 137 (1088)
Q Consensus 91 la~~gd~~v~iw~l~~~~~----------------------~~~~~~~~~~~~-------~~----~~~~l~~h~~~I~~ 137 (1088)
+++.+++++.+-+-..+.. ...+|....... .. -...+. +.+.-..
T Consensus 136 a~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ 214 (928)
T PF04762_consen 136 ALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVR 214 (928)
T ss_pred EEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceE
Confidence 6667788887775432110 001111100000 00 011222 4556677
Q ss_pred EEEecccCCCCEEEEEEc---C---CcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEec---CCeEEEE
Q 001391 138 VCFLKVCNGNRSLAIGCS---D---NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI---YNEIIVW 208 (1088)
Q Consensus 138 v~f~p~~~d~~~lasgs~---D---g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~---dg~I~vw 208 (1088)
+.|-. ||+++|+.+- . ..+|||+-+ |....+.+ +....--++++ .|.|.+||+.-. ...|.+|
T Consensus 215 ISWRG---DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE-~v~gLe~~l~W---rPsG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 215 ISWRG---DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE-PVDGLEGALSW---RPSGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred EEECC---CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc-cCCCccCCccC---CCCCCEEEEEEEcCCCcEEEEE
Confidence 88887 9999998764 2 579999975 55444333 33333333433 588999998754 3455666
Q ss_pred EeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001391 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE 288 (1088)
Q Consensus 209 d~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~ 288 (1088)
.-+ +. ..++....+......|..+.|++|+..|+..-.|. |.+|...+.
T Consensus 287 ErN-----GL-------------------------rhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 287 ERN-----GL-------------------------RHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred ecC-----Cc-------------------------EeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence 544 00 01121222224567899999999999999988775 999999886
Q ss_pred cccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcC-----CCc--------eeEEEcc-------
Q 001391 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-----DGK--------QLKMIKE------- 345 (1088)
Q Consensus 289 ~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~-----~~~--------~~~~~~~------- 345 (1088)
.. .++..........+..+.|+ +..|.....+|.+..++. .+. .+..+.+
T Consensus 336 HW-------YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTp 408 (928)
T PF04762_consen 336 HW-------YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTP 408 (928)
T ss_pred EE-------EEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEec
Confidence 43 12211222233344457887 456666666666655443 110 0111110
Q ss_pred ---------------cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 346 ---------------HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 346 ---------------h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
.-..+|..++|++++..+++-..||.+.+|.+..
T Consensus 409 f~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 409 FRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred ccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 1113699999999998899999999999999743
No 237
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=6.4e-07 Score=93.97 Aligned_cols=206 Identities=15% Similarity=0.184 Sum_probs=135.6
Q ss_pred CcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEecc
Q 001391 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~ 212 (1088)
-.+..++|++ .-..+|++..|-+|++||-.. ++...++......+.++++.+.+ +..++.|.. +.|.+|....
T Consensus 99 ~dlr~~aWhq---H~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPls--aselavgCr-~gIciW~~s~ 171 (445)
T KOG2139|consen 99 IDLRGVAWHQ---HIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLS--ASELAVGCR-AGICIWSDSR 171 (445)
T ss_pred cceeeEeech---hhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCC--cceeeeeec-ceeEEEEcCc
Confidence 3577889988 666789999999999999877 55556666655567777775443 335666654 5689998761
Q ss_pred CccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCccc
Q 001391 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRSARIWEVRAEYWK 291 (1088)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~-Dg~v~iWd~~~~~~~ 291 (1088)
.-.... .++. .......+..-.|| ..|+++.|.+||..+++++. |..|+|||.+++..
T Consensus 172 tln~~r-----------------~~~~--~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~- 230 (445)
T KOG2139|consen 172 TLNANR-----------------NIRM--MSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK- 230 (445)
T ss_pred cccccc-----------------cccc--ccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc-
Confidence 111100 0000 00011223344566 78999999999999999775 68899999999754
Q ss_pred CCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeC
Q 001391 292 DSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF 368 (1088)
Q Consensus 292 ~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~ 368 (1088)
.++ . .--.+.+.-+.|+ +.+|+.+.-|+..++|.. ..........-.+ .|...+|+|.|++|+-...
T Consensus 231 -----~pL---~-~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsg-rvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 231 -----IPL---I-PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSG-RVQTACWSPCGSFLLFACS 300 (445)
T ss_pred -----ccc---c-ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCC-ceeeeeecCCCCEEEEEEc
Confidence 222 1 1233567889998 689999999999999976 2222222222334 4999999999986654442
Q ss_pred CCCEEEEEc
Q 001391 369 DSAIKVHQF 377 (1088)
Q Consensus 369 Dg~I~iwd~ 377 (1088)
|.-++|.+
T Consensus 301 -gsp~lysl 308 (445)
T KOG2139|consen 301 -GSPRLYSL 308 (445)
T ss_pred -CCceEEEE
Confidence 34456666
No 238
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.93 E-value=0.00026 Score=89.50 Aligned_cols=418 Identities=13% Similarity=0.093 Sum_probs=220.1
Q ss_pred CCCcEEEEEEecccCCCCEEEEEEcCCcEEEE----EcCCC--ceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCe
Q 001391 131 LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVW----DISNS--SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNE 204 (1088)
Q Consensus 131 h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iW----d~~~~--~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~ 204 (1088)
..+.|.++.+.+ +...++.+..+|.|.+. +..+. +.+..+..+ +.++++ +||+.+|+..+.+++
T Consensus 74 ~~~~ivs~~yl~---d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~G----I~a~~W---SPD~Ella~vT~~~~ 143 (928)
T PF04762_consen 74 PNDKIVSFQYLA---DSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSG----ILAASW---SPDEELLALVTGEGN 143 (928)
T ss_pred CCCcEEEEEecc---CCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCc----EEEEEE---CCCcCEEEEEeCCCE
Confidence 457899999999 88888889999999999 44433 334444444 444544 699999999999999
Q ss_pred EEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 001391 205 IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (1088)
Q Consensus 205 I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd 284 (1088)
+.+-+-. ..++....-+.... .....++.|....=.-+.
T Consensus 144 l~~mt~~----------------------------------fd~i~E~~l~~~~~-------~~~~~VsVGWGkKeTQF~ 182 (928)
T PF04762_consen 144 LLLMTRD----------------------------------FDPISEVPLDSDDF-------GESKHVSVGWGKKETQFH 182 (928)
T ss_pred EEEEecc----------------------------------ceEEEEeecCcccc-------CCCceeeeccCcccCccC
Confidence 9887644 12222221111000 001122222111100010
Q ss_pred cCCCcccC---CCCce-eeeceeeeccCcceEEEEEC--CCEEEEEeC---C---CcEEEEcCCCceeEEEcccCCCCeE
Q 001391 285 VRAEYWKD---SDSIE-EVGSSVLYGHNARVWDCCLT--DSFIITAGE---D---CTCRVWGSDGKQLKMIKEHIGRGIW 352 (1088)
Q Consensus 285 ~~~~~~~~---~~~~~-~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~---D---g~i~vWd~~~~~~~~~~~h~~~~V~ 352 (1088)
-..++... .++.. .+..-.+. +...-..++|. |.++++.+. . +.+|||+.+|....+-..-.+ -=.
T Consensus 183 Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~g-Le~ 260 (928)
T PF04762_consen 183 GSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDG-LEG 260 (928)
T ss_pred cchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCC-ccC
Confidence 00010000 00000 00000222 44455678887 577777663 2 579999998876555443333 234
Q ss_pred EEEEcCCCCEEEEEeC---CCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEecc
Q 001391 353 RCLYDSLSSLLVTAGF---DSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTS 429 (1088)
Q Consensus 353 ~l~~~~dg~~l~tg~~---Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 429 (1088)
+++|.|.|++||+.-. ...|.+|.-++..... |.+. +......|..++|++
T Consensus 261 ~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhge----------------F~l~----------~~~~~~~v~~l~Wn~ 314 (928)
T PF04762_consen 261 ALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGE----------------FTLR----------FDPEEEKVIELAWNS 314 (928)
T ss_pred CccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeee----------------EecC----------CCCCCceeeEEEECC
Confidence 7899999999998875 3456666655432111 1111 112335689999999
Q ss_pred CCeEEEEecCCeEEEEEeccCCcceeEEeeee--cCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcC
Q 001391 430 EDTLYIATNHGYLYHTKLCDMDSVNWNKILQV--SEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHT 507 (1088)
Q Consensus 430 ~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~--~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~ 507 (1088)
++.+|+..-...+. +|..++..|-.-... .....+..+.+++. +...+.+.+.+|.+..+++.-..
T Consensus 315 ds~iLAv~~~~~vq---LWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe-------~p~~L~v~t~~g~~~~~~~~~~v-- 382 (928)
T PF04762_consen 315 DSEILAVWLEDRVQ---LWTRSNYHWYLKQEIRFSSSESVNFVKWDPE-------KPLRLHVLTSNGQYEIYDFAWDV-- 382 (928)
T ss_pred CCCEEEEEecCCce---EEEeeCCEEEEEEEEEccCCCCCCceEECCC-------CCCEEEEEecCCcEEEEEEEEEE--
Confidence 99888876665555 677777777322222 22222333444443 44667777777888776653110
Q ss_pred cceeeeeeeeccccceeeeEEEeecC-CCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEE
Q 001391 508 PQLSFTFTWSAGIERQLLGTYWCKSL-GHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCL 586 (1088)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l 586 (1088)
.... ..++ |...+++-+ ...+++-.++...-+.+. ..+.......|.++
T Consensus 383 -------~~s~-----------~~~~~D~g~vaVID-G~~lllTpf~~a~VPPPM-----------s~~~l~~~~~v~~v 432 (928)
T PF04762_consen 383 -------SRSP-----------GSSPNDNGTVAVID-GNKLLLTPFRRAVVPPPM-----------SSYELELPSPVNDV 432 (928)
T ss_pred -------EecC-----------CCCccCceEEEEEe-CCeEEEecccccCCCchH-----------hceEEcCCCCcEEE
Confidence 0000 0111 222333332 224555544432110000 11222346679999
Q ss_pred EeeeCCCEEEEEcCCCcEEEEeCCccccc-ccccccccccCcc--eeecccccccceeEEEEEeccCCceEEEEecCC--
Q 001391 587 DASFEDEVLFCGDLRGNLVLFPLLRDLLN-DKSVALHVEVSPL--NYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGD-- 661 (1088)
Q Consensus 587 ~~spdg~~LatGs~dg~I~Iw~~~~~~~~-~~~~~~~~~l~~~--~~~~g~hg~~~Vtsv~~~~~~~~~~~l~t~g~D-- 661 (1088)
+|++++..+|+-..||+|.+|........ ...+.....+... ......-....+.++.|. .+...++....+
T Consensus 433 af~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 509 (928)
T PF04762_consen 433 AFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWL---NDDTLLVLSDSDSN 509 (928)
T ss_pred EEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEe---CCCEEEEEEecCcc
Confidence 99999988999999999999996653221 0001110111100 000000011468888888 343444444443
Q ss_pred -CeEEEEEeecC
Q 001391 662 -GCICYLEYDKD 672 (1088)
Q Consensus 662 -g~i~iw~~~~~ 672 (1088)
..+.++++...
T Consensus 510 ~~~i~~~~~~~~ 521 (928)
T PF04762_consen 510 QSKIVLVDIDDS 521 (928)
T ss_pred cceEEEEEeccC
Confidence 67777777443
No 239
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.88 E-value=2.9e-07 Score=95.89 Aligned_cols=237 Identities=14% Similarity=0.118 Sum_probs=141.6
Q ss_pred CCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce-----EEEeccC--CceeEE---------EEeeecCCCCCc
Q 001391 131 LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-----ILEVHSP--ERCLLY---------SMKLWGDNLEAL 194 (1088)
Q Consensus 131 h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~-----~~~~~~~--~~~~~~---------s~~~~~~s~~~~ 194 (1088)
..+-|.++.|.. .|.+||||..+|.|.++.-..... ...++.| +...+- .++++. ..+..
T Consensus 24 eadiis~vef~~---~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~-~~n~a 99 (433)
T KOG1354|consen 24 EADIISAVEFDH---YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLD-DGNLA 99 (433)
T ss_pred hhcceeeEEeec---ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecC-CCCcc
Confidence 347799999999 999999999999999987654321 2222222 221221 223322 34456
Q ss_pred EEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccc-----ccceeeeEEE-eCCCCCEEEEEEcCCC
Q 001391 195 RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ-----QHTAVNLFRL-VGHEGSIFRIEWSSCG 268 (1088)
Q Consensus 195 ~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~gh~~~V~~v~~sp~g 268 (1088)
.+...+.|.+|++|.+.......... .....+....-..+++... .....+.+.+ .+|.-.|.++.++.|+
T Consensus 100 ~FLlstNdktiKlWKi~er~~k~~~~---~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~ 176 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGSKKEGY---NLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK 176 (433)
T ss_pred EEEEecCCcceeeeeeeccccccccc---cccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc
Confidence 67778899999999998433222100 0000001111111111110 0011222232 4799999999999999
Q ss_pred CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC---CEEEEEeCCCcEEEEcCCCc-----ee
Q 001391 269 SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGEDCTCRVWGSDGK-----QL 340 (1088)
Q Consensus 269 ~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~---~~l~sg~~Dg~i~vWd~~~~-----~~ 340 (1088)
..++|+ +|=.|.+|++.-... +...--++|..+..-+.-|++..|++ ++++-.+..|+|++-|+... ..
T Consensus 177 Et~lSA-DdLRINLWnlei~d~--sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hs 253 (433)
T KOG1354|consen 177 ETFLSA-DDLRINLWNLEIIDQ--SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHS 253 (433)
T ss_pred ceEeec-cceeeeeccccccCC--ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchh
Confidence 999987 566799999875321 00011122222233344688889983 67888888999999998421 11
Q ss_pred EEEcccCC-----------CCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 341 KMIKEHIG-----------RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 341 ~~~~~h~~-----------~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
+.+..... ..|..+.|+++|+++++-.. -+|++||++
T Consensus 254 KlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~n 301 (433)
T KOG1354|consen 254 KLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLN 301 (433)
T ss_pred hhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecc
Confidence 11111110 25788999999999987543 589999994
No 240
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.87 E-value=1.1e-08 Score=115.42 Aligned_cols=290 Identities=17% Similarity=0.207 Sum_probs=187.4
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCC-eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG-TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg-~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g 95 (1088)
.+++.++.++ |. |+-+|.++.--+.|-|+... ..-+-+.......|-.++|+|. |.- +.-++.+.
T Consensus 24 ~~~~~a~si~--p~----grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h-----~a~---~~wiVsts 89 (1081)
T KOG0309|consen 24 DGGFNAVSIN--PS----GRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPH-----PAK---PYWIVSTS 89 (1081)
T ss_pred cCcccceeec--cc----cchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccC-----CCC---ceeEEecC
Confidence 4678899999 87 67677766544667787643 3433444334445788899965 332 37788888
Q ss_pred CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEecc
Q 001391 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS 175 (1088)
Q Consensus 96 d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~ 175 (1088)
.....+|++.... .......+.||...|+++.|+| .....+++++.|-.+..||+.+.....-...
T Consensus 90 ~qkaiiwnlA~ss------------~~aIef~lhghsraitd~n~~~--q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~ 155 (1081)
T KOG0309|consen 90 NQKAIIWNLAKSS------------SNAIEFVLHGHSRAITDINFNP--QHPDVLATCSVDTYVHAWDMRSPHRPFYSTS 155 (1081)
T ss_pred cchhhhhhhhcCC------------ccceEEEEecCccceeccccCC--CCCcceeeccccccceeeeccCCCcceeeee
Confidence 8889999998654 1334456679999999999998 2446899999999999999987644222111
Q ss_pred CCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCC
Q 001391 176 PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (1088)
Q Consensus 176 ~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 255 (1088)
.-......+++. -.++..+| .+..+.|.+||.+ ....++..+++|
T Consensus 156 ~w~s~asqVkwn--yk~p~vla-sshg~~i~vwd~r--------------------------------~gs~pl~s~K~~ 200 (1081)
T KOG0309|consen 156 SWRSAASQVKWN--YKDPNVLA-SSHGNDIFVWDLR--------------------------------KGSTPLCSLKGH 200 (1081)
T ss_pred cccccCceeeec--ccCcchhh-hccCCceEEEecc--------------------------------CCCcceEEeccc
Confidence 111111122221 13344444 3455779999988 256788899999
Q ss_pred CCCEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEE---------
Q 001391 256 EGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFII--------- 322 (1088)
Q Consensus 256 ~~~V~~v~~sp-~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~--------- 322 (1088)
...|..++|.. ....+.+++.|++|+.||...... .-+ .......+||.-++. ..+.+
T Consensus 201 vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~-------e~~--~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v 271 (1081)
T KOG0309|consen 201 VSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT-------ESK--RTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMV 271 (1081)
T ss_pred ceeeehHHHhhhhhhhhcccCCCCceeeeccccccc-------ccc--eeccccCcceeccccccCceeEeccccCCeee
Confidence 99999999975 335688999999999999876422 111 222233445555543 11111
Q ss_pred -EEeCCCcEEEEcC--CCceeEEEcccCCCCeEEEEEcC--------CC--CEEEEEeCCCCEEEEEcCC
Q 001391 323 -TAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWRCLYDS--------LS--SLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 323 -sg~~Dg~i~vWd~--~~~~~~~~~~h~~~~V~~l~~~~--------dg--~~l~tg~~Dg~I~iwd~~~ 379 (1088)
---.+.....|+. ..+++..|.+|.. .|....|-. |. -.|+|=+.|..+++|-+..
T Consensus 272 ~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 272 PQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred eeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 1112223334554 3467899999987 354444421 22 2799999999999999854
No 241
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.87 E-value=4.5e-07 Score=92.75 Aligned_cols=112 Identities=17% Similarity=0.265 Sum_probs=88.9
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcC
Q 001391 259 IFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 259 V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~ 335 (1088)
..++.|++.+..++++-.+|.+.+-+...... +.++ ...+|...+|.+.|+ ++++++|+.||.+..||+
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~l------e~vq--~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~ 195 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVL------EKVQ--TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDI 195 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeee------eecc--cccccceeeeeeecccCCCceEEecCCCceEEEEEe
Confidence 45788999999999999999988555444321 3333 778999999999998 789999999999999999
Q ss_pred C--CceeEE-EcccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEcCC
Q 001391 336 D--GKQLKM-IKEHIGRGIWRCLYDS-LSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 336 ~--~~~~~~-~~~h~~~~V~~l~~~~-dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
. ++.+.. -+-|.. +|.+|.-+| .+.+|+||+.|-.|++||.+.
T Consensus 196 R~p~~~i~~n~kvH~~-GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 196 RIPKTFIWHNSKVHTS-GVVSIYSSPPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred cCCcceeeecceeeec-ceEEEecCCCCCceEEEeccccceeeeehhc
Confidence 3 444433 456776 799998876 467999999999999999853
No 242
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.87 E-value=2.7e-07 Score=108.41 Aligned_cols=232 Identities=13% Similarity=0.024 Sum_probs=138.6
Q ss_pred CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE---CCCEEEEEEeccCCCCCCCCCCcccc
Q 001391 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF---GEKRVKLFELNFELSPNSQYQPETCV 120 (1088)
Q Consensus 44 ~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~---gd~~v~iw~l~~~~~~~~~~~~~~~~ 120 (1088)
.+|.+||... .....+..+.. .+...+|+ |||+ .++.++ +...|.+|++....
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~-~v~~p~wS-------pDg~---~la~~s~~~~~~~l~~~dl~~g~------------ 239 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAE-PILSPAWS-------PDGK---KLAYVSFERGRSAIYVQDLATGQ------------ 239 (433)
T ss_pred EEEEEECCCC-CCceEeecCCC-ccccccCC-------CCCC---EEEEEecCCCCcEEEEEECCCCC------------
Confidence 3699999864 44444554443 68899999 8873 333333 23579999987533
Q ss_pred ccceeeeccCCCCcEEEEEEecccCCCCEEE-EEEcCC--cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEE
Q 001391 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (1088)
Q Consensus 121 ~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la-sgs~Dg--~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~ 197 (1088)
.+.+.. +.+...+.+|+| ||+.|+ +.+.++ .|.+||+.+++... +..+. ....+..+ ++|+..|+
T Consensus 240 -~~~l~~---~~g~~~~~~~Sp---DG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~-~~~~~~~~---spDG~~l~ 307 (433)
T PRK04922 240 -RELVAS---FRGINGAPSFSP---DGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHF-GIDTEPTW---APDGKSIY 307 (433)
T ss_pred -EEEecc---CCCCccCceECC---CCCEEEEEEeCCCCceEEEEECCCCCeEE-CccCC-CCccceEE---CCCCCEEE
Confidence 223332 333455789999 998765 445555 59999998876533 32221 12233444 67888777
Q ss_pred EEe-cCCe--EEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEE
Q 001391 198 SGT-IYNE--IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV 274 (1088)
Q Consensus 198 sg~-~dg~--I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~ 274 (1088)
..+ .+|. |.++++. .+. ...+..+.......+|+|+|++++..
T Consensus 308 f~sd~~g~~~iy~~dl~---------------------------------~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 308 FTSDRGGRPQIYRVAAS---------------------------------GGS-AERLTFQGNYNARASVSPDGKKIAMV 353 (433)
T ss_pred EEECCCCCceEEEEECC---------------------------------CCC-eEEeecCCCCccCEEECCCCCEEEEE
Confidence 655 4555 4444544 111 22222233345578999999998876
Q ss_pred ECCC---cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC---CcEEEEcCCCceeEEEccc
Q 001391 275 SDDR---SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSDGKQLKMIKEH 346 (1088)
Q Consensus 275 s~Dg---~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D---g~i~vWd~~~~~~~~~~~h 346 (1088)
+.++ .|.+||+.+++. + .+. +........|+ +..|+..+.+ +.+.+++.++.....+..+
T Consensus 354 ~~~~~~~~I~v~d~~~g~~------~-----~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~ 421 (433)
T PRK04922 354 HGSGGQYRIAVMDLSTGSV------R-----TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVSA 421 (433)
T ss_pred ECCCCceeEEEEECCCCCe------E-----ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEcccC
Confidence 5443 689999877543 1 111 22223455777 5666655543 3577788887777777665
Q ss_pred CCCCeEEEEEcC
Q 001391 347 IGRGIWRCLYDS 358 (1088)
Q Consensus 347 ~~~~V~~l~~~~ 358 (1088)
.+ .+...+|+|
T Consensus 422 ~g-~~~~p~wsp 432 (433)
T PRK04922 422 DG-EVREPAWSP 432 (433)
T ss_pred CC-CCCCCccCC
Confidence 55 366677765
No 243
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=2.8e-07 Score=101.99 Aligned_cols=236 Identities=13% Similarity=0.091 Sum_probs=149.9
Q ss_pred eEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC
Q 001391 68 LHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1088)
Q Consensus 68 V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d 146 (1088)
-..|..+ |||+ +++|++- --.|++||+..-. +++.+++. ..|..+.... .|
T Consensus 54 st~ik~s-------~DGq---Y~lAtG~YKP~ikvydlanLS-------------LKFERhlD---ae~V~feiLs--DD 105 (703)
T KOG2321|consen 54 STRIKVS-------PDGQ---YLLATGTYKPQIKVYDLANLS-------------LKFERHLD---AEVVDFEILS--DD 105 (703)
T ss_pred cceeEec-------CCCc---EEEEecccCCceEEEEcccce-------------eeeeeccc---ccceeEEEec--cc
Confidence 5677777 8993 4444443 6899999998543 45555443 2333333222 25
Q ss_pred CCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCcc
Q 001391 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (1088)
Q Consensus 147 ~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s 226 (1088)
-..++--..|.+|.+-.--...-...+.... ..++++. ++..++++ +....|+-++++
T Consensus 106 ~SK~v~L~~DR~IefHak~G~hy~~RIP~~G----RDm~y~~--~scDly~~-gsg~evYRlNLE--------------- 163 (703)
T KOG2321|consen 106 YSKSVFLQNDRTIEFHAKYGRHYRTRIPKFG----RDMKYHK--PSCDLYLV-GSGSEVYRLNLE--------------- 163 (703)
T ss_pred hhhheEeecCceeeehhhcCeeeeeecCcCC----ccccccC--CCccEEEe-ecCcceEEEEcc---------------
Confidence 5556666778888775432221122222222 2344432 33333333 344567778887
Q ss_pred CCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeec-eeee
Q 001391 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS-SVLY 305 (1088)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~-~~~~ 305 (1088)
.++.+..+....+.++++..++...+|++|+.||.|-.||.+.... ...+.. ....
T Consensus 164 ------------------qGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr-----v~~l~~~~~v~ 220 (703)
T KOG2321|consen 164 ------------------QGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR-----VGTLDAASSVN 220 (703)
T ss_pred ------------------ccccccccccccccceeeeecCccceEEecccCceEEEecchhhhh-----heeeecccccC
Confidence 6777777777779999999999999999999999999999988643 111110 1222
Q ss_pred ccCc-----ceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCC-CCeEEEEEcCC--CCEEEEEeCCCCEEE
Q 001391 306 GHNA-----RVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIG-RGIWRCLYDSL--SSLLVTAGFDSAIKV 374 (1088)
Q Consensus 306 ~h~~-----~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~-~~V~~l~~~~d--g~~l~tg~~Dg~I~i 374 (1088)
.|.. .|+++.|+ |-.++.|..+|.+.+||+ ..+++. .+.|.. -+|..+.|.+. ++.|++. ....++|
T Consensus 221 s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~-~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~ki 298 (703)
T KOG2321|consen 221 SHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL-VKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKI 298 (703)
T ss_pred CCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee-ecccCCccceeeecccccCCCceEEec-chHHhhh
Confidence 2333 49999998 457999999999999999 444433 333432 36889999765 3455554 3568899
Q ss_pred EEcC
Q 001391 375 HQFQ 378 (1088)
Q Consensus 375 wd~~ 378 (1088)
||-.
T Consensus 299 Wd~~ 302 (703)
T KOG2321|consen 299 WDEC 302 (703)
T ss_pred cccc
Confidence 9984
No 244
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.86 E-value=7.1e-07 Score=105.03 Aligned_cols=200 Identities=12% Similarity=0.064 Sum_probs=127.2
Q ss_pred eeeccCCCCcEEEEEEecccCCCCEEEEEEc---CCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEE-EEe
Q 001391 125 VQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS---DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGT 200 (1088)
Q Consensus 125 ~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~---Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~-sg~ 200 (1088)
.+.+..|...+.+.+|+| ||+.|+..+. +..|.+||+.+++... +..... ......+ +||+..|+ +.+
T Consensus 194 ~~~lt~~~~~v~~p~wSp---DG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~g-~~~~~~~---SPDG~~la~~~~ 265 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSP---NRQEITYMSYANGRPRVYLLDLETGQREL-VGNFPG-MTFAPRF---SPDGRKVVMSLS 265 (435)
T ss_pred cEEEecCCCCeEeeEECC---CCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCCC-cccCcEE---CCCCCEEEEEEe
Confidence 344557788999999999 9998887653 4689999998876532 221111 2223333 68887765 555
Q ss_pred cCCe--EEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC-C
Q 001391 201 IYNE--IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-D 277 (1088)
Q Consensus 201 ~dg~--I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~-D 277 (1088)
.++. |.+||+. .+ ....+..+.+......|+|||+.++..+. +
T Consensus 266 ~~g~~~Iy~~d~~---------------------------------~~-~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~ 311 (435)
T PRK05137 266 QGGNTDIYTMDLR---------------------------------SG-TTTRLTDSPAIDTSPSYSPDGSQIVFESDRS 311 (435)
T ss_pred cCCCceEEEEECC---------------------------------CC-ceEEccCCCCccCceeEcCCCCEEEEEECCC
Confidence 6665 6666765 22 23445556666778899999999887764 3
Q ss_pred C--cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC---CcEEEEcCCCceeEEEcccCCCC
Q 001391 278 R--SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSDGKQLKMIKEHIGRG 350 (1088)
Q Consensus 278 g--~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D---g~i~vWd~~~~~~~~~~~h~~~~ 350 (1088)
+ .|.+||+..+.. + .+..+...+....|+ +..|+....+ ..|.+|++++.....+.. .. .
T Consensus 312 g~~~Iy~~d~~g~~~------~-----~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~-~~-~ 378 (435)
T PRK05137 312 GSPQLYVMNADGSNP------R-----RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTS-GF-L 378 (435)
T ss_pred CCCeEEEEECCCCCe------E-----EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccC-CC-C
Confidence 3 577778766432 1 222233445667787 5677665543 357888885555554432 22 3
Q ss_pred eEEEEEcCCCCEEEEEeCC------CCEEEEEcCC
Q 001391 351 IWRCLYDSLSSLLVTAGFD------SAIKVHQFQA 379 (1088)
Q Consensus 351 V~~l~~~~dg~~l~tg~~D------g~I~iwd~~~ 379 (1088)
+....|+|||+.|+..+.+ ..+.++++.+
T Consensus 379 ~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 379 VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 6788999999987765543 2456666654
No 245
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.85 E-value=3.1e-07 Score=107.91 Aligned_cols=198 Identities=13% Similarity=0.067 Sum_probs=122.6
Q ss_pred eccCCCCcEEEEEEecccCCCCEEEEEEc---CCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEE-EEecC
Q 001391 127 SLPRLSHWVFDVCFLKVCNGNRSLAIGCS---DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTIY 202 (1088)
Q Consensus 127 ~l~~h~~~I~~v~f~p~~~d~~~lasgs~---Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~-sg~~d 202 (1088)
.+..+...+.+.+|+| |++.|+..+. +..|.+||+.+++.......+ ....+..+ +|++..|+ +.+.+
T Consensus 198 ~lt~~~~~v~~p~wSp---Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~--g~~~~~~~---SpDG~~l~~~~s~~ 269 (433)
T PRK04922 198 TILRSAEPILSPAWSP---DGKKLAYVSFERGRSAIYVQDLATGQRELVASFR--GINGAPSF---SPDGRRLALTLSRD 269 (433)
T ss_pred EeecCCCccccccCCC---CCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC--CCccCceE---CCCCCEEEEEEeCC
Confidence 3446677899999999 9998888763 346999999887653322111 11223333 67887665 44555
Q ss_pred C--eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC-CCc
Q 001391 203 N--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRS 279 (1088)
Q Consensus 203 g--~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~-Dg~ 279 (1088)
| .|.+||+. ++. +..+..+.......+|+|||++++.++. ++.
T Consensus 270 g~~~Iy~~d~~---------------------------------~g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~ 315 (433)
T PRK04922 270 GNPEIYVMDLG---------------------------------SRQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGR 315 (433)
T ss_pred CCceEEEEECC---------------------------------CCC-eEECccCCCCccceEECCCCCEEEEEECCCCC
Confidence 5 58888887 222 3344455555677899999999887764 444
Q ss_pred --EEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCC---cEEEEcCCCceeEEEcccCCCCeE
Q 001391 280 --ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC---TCRVWGSDGKQLKMIKEHIGRGIW 352 (1088)
Q Consensus 280 --v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg---~i~vWd~~~~~~~~~~~h~~~~V~ 352 (1088)
|.++++.+++. +.+ +. +.......+|+ +..|+..+.++ .|.+||+.+.....+.. .. ...
T Consensus 316 ~~iy~~dl~~g~~------~~l---t~--~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~-~~-~~~ 382 (433)
T PRK04922 316 PQIYRVAASGGSA------ERL---TF--QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTP-GS-LDE 382 (433)
T ss_pred ceEEEEECCCCCe------EEe---ec--CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCC-CC-CCC
Confidence 55566655422 111 22 22334457787 56776654333 58999994443444432 22 245
Q ss_pred EEEEcCCCCEEEEEeCC---CCEEEEEcCC
Q 001391 353 RCLYDSLSSLLVTAGFD---SAIKVHQFQA 379 (1088)
Q Consensus 353 ~l~~~~dg~~l~tg~~D---g~I~iwd~~~ 379 (1088)
...|+|||++|+..+.+ +.+.++++.+
T Consensus 383 ~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 383 SPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred CceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 67899999987766653 3455666654
No 246
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.85 E-value=3.8e-06 Score=97.13 Aligned_cols=263 Identities=12% Similarity=0.066 Sum_probs=151.4
Q ss_pred CCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceE-EEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCC
Q 001391 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLH-GISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNS 112 (1088)
Q Consensus 35 ~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~-~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~ 112 (1088)
+..+.++. ++.|.-+|..+|+++..+..... +. .... .++ .+++...++.+..+|.+++.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~--~~~~p~v--------~~~----~v~v~~~~g~l~ald~~tG~---- 126 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDER--LSGGVGA--------DGG----LVFVGTEKGEVIALDAEDGK---- 126 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCC--cccceEE--------cCC----EEEEEcCCCEEEEEECCCCc----
Confidence 34555555 68999999999999888775332 21 1221 222 56666678999999987543
Q ss_pred CCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeE----EEEeeec
Q 001391 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLL----YSMKLWG 188 (1088)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~----~s~~~~~ 188 (1088)
.+..... .+.+.+.-.. .+..++.++.++.+..||..+++.+.+......... .+..+
T Consensus 127 -----------~~W~~~~-~~~~~~~p~v----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~-- 188 (377)
T TIGR03300 127 -----------ELWRAKL-SSEVLSPPLV----ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI-- 188 (377)
T ss_pred -----------Eeeeecc-CceeecCCEE----ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--
Confidence 1111111 1222221111 234566777899999999999998777654322110 01111
Q ss_pred CCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCC--CCEEEEEEcC
Q 001391 189 DNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE--GSIFRIEWSS 266 (1088)
Q Consensus 189 ~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~--~~V~~v~~sp 266 (1088)
.+..++.+..+|.+..+|..+++.. |... .....+.. ..+..+.-+|
T Consensus 189 ---~~~~v~~~~~~g~v~ald~~tG~~~-----------------------W~~~-----~~~~~g~~~~~~~~~~~~~p 237 (377)
T TIGR03300 189 ---ADGGVLVGFAGGKLVALDLQTGQPL-----------------------WEQR-----VALPKGRTELERLVDVDGDP 237 (377)
T ss_pred ---ECCEEEEECCCCEEEEEEccCCCEe-----------------------eeec-----cccCCCCCchhhhhccCCcc
Confidence 1236777888899999998732211 1100 00000000 0000000011
Q ss_pred --CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEE
Q 001391 267 --CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMI 343 (1088)
Q Consensus 267 --~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~ 343 (1088)
.+..++.++.++.++.||..+++. +- ... . .........++.++.++.||.+..+|. +|+.+...
T Consensus 238 ~~~~~~vy~~~~~g~l~a~d~~tG~~--------~W--~~~-~-~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 238 VVDGGQVYAVSYQGRVAALDLRSGRV--------LW--KRD-A-SSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKN 305 (377)
T ss_pred EEECCEEEEEEcCCEEEEEECCCCcE--------EE--eec-c-CCccCceEeCCEEEEECCCCeEEEEECCCCcEEEcc
Confidence 356788888899999999988632 11 111 1 112233345788888999999999999 78877665
Q ss_pred cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 344 KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 344 ~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
.........+... .+..|++++.||.+.++|..
T Consensus 306 ~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 306 DELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred ccccCCccccCEE--ECCEEEEEeCCCEEEEEECC
Confidence 3322212233333 35688999999999999984
No 247
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.83 E-value=4.9e-07 Score=92.51 Aligned_cols=270 Identities=16% Similarity=0.107 Sum_probs=160.6
Q ss_pred CeEEEEECCCCeeEE--EEeeeCCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCcccc
Q 001391 44 SQVLLYDLEAGTLIR--PFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCV 120 (1088)
Q Consensus 44 ~~I~vwd~~tg~~~~--~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~ 120 (1088)
|.+.+|++.+-+.+. +++.-....++.|.|+-. ..+| +..++. -..+.|.++....... . .
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~----~~~g---~~~l~~a~a~G~i~~~r~~~~~s-s--------~ 109 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIR----ETDG---DFNLLDAHARGQIQLYRNDEDES-S--------V 109 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeec----cCCc---cceeeeccccceEEEEeecccee-e--------e
Confidence 368889887765443 444333345778888622 1333 233333 4489999998774320 0 0
Q ss_pred ccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceE--EEeccCCceeEEEEeeecCCCCCcEEEE
Q 001391 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII--LEVHSPERCLLYSMKLWGDNLEALRIAS 198 (1088)
Q Consensus 121 ~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~--~~~~~~~~~~~~s~~~~~~s~~~~~l~s 198 (1088)
.++.+...+--...-.++.|++ .+..++++-.+|.+.+-+....... +..+.|+. .+|.+.|-. .+.+++++
T Consensus 110 ~L~~ls~~ki~~~~~lslD~~~---~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~-E~Wta~f~~--~~pnlvyt 183 (339)
T KOG0280|consen 110 HLRGLSSKKISVVEALSLDIST---SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEF-EAWTAKFSD--KEPNLVYT 183 (339)
T ss_pred eecccchhhhhheeeeEEEeec---cCceEEEEcCCCcEEEEecceeeeeecccccccce-eeeeeeccc--CCCceEEe
Confidence 1111111111111346788888 7888999988999986555444332 34555543 466666643 34579999
Q ss_pred EecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcC-CCCEEEEEECC
Q 001391 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDD 277 (1088)
Q Consensus 199 g~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp-~g~~l~s~s~D 277 (1088)
|+.|+.+..||++. + .....+..+-|...|.+|.-+| .+.+++||+.|
T Consensus 184 GgDD~~l~~~D~R~----p---------------------------~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYD 232 (339)
T KOG0280|consen 184 GGDDGSLSCWDIRI----P---------------------------KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYD 232 (339)
T ss_pred cCCCceEEEEEecC----C---------------------------cceeeecceeeecceEEEecCCCCCceEEEeccc
Confidence 99999999999981 0 1222233567889999998886 57789999999
Q ss_pred CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCC---EEEEEeCCCcEEEEcCC---Cc---eeEEEcccCC
Q 001391 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDS---FIITAGEDCTCRVWGSD---GK---QLKMIKEHIG 348 (1088)
Q Consensus 278 g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~---~l~sg~~Dg~i~vWd~~---~~---~~~~~~~h~~ 348 (1088)
-.|++||.++-. +++. ...-.+.||.+..++. .++.++.-.-.+|-+.+ .+ .+...+.|..
T Consensus 233 e~i~~~DtRnm~-------kPl~---~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdS 302 (339)
T KOG0280|consen 233 ECIRVLDTRNMG-------KPLF---KAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDS 302 (339)
T ss_pred cceeeeehhccc-------Cccc---cCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccc
Confidence 999999998642 2222 1223378999998842 33444444445666652 22 2233344443
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCCCEE-EEEc
Q 001391 349 RGIWRCLYDSLSSLLVTAG-FDSAIK-VHQF 377 (1088)
Q Consensus 349 ~~V~~l~~~~dg~~l~tg~-~Dg~I~-iwd~ 377 (1088)
-+..-.|......|+|++ .|+.++ +|-.
T Consensus 303 -l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 303 -LCYGGDWDSKDSFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred -eeeccccccccceeeeeeccccceeeeeee
Confidence 233334433335678865 466644 6643
No 248
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.82 E-value=7.5e-07 Score=104.32 Aligned_cols=194 Identities=12% Similarity=0.033 Sum_probs=121.0
Q ss_pred eeccCCCCcEEEEEEecccCCCCEEEEEEcC---CcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEE-EEec
Q 001391 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD---NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTI 201 (1088)
Q Consensus 126 ~~l~~h~~~I~~v~f~p~~~d~~~lasgs~D---g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~-sg~~ 201 (1088)
+.+..+...+.+.+|+| ||+.|+..+.+ ..|.+||+.+++.......+ . ......+ +||+..|+ +.+.
T Consensus 189 ~~l~~~~~~v~~p~wSP---DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~-g-~~~~~~~---SPDG~~la~~~~~ 260 (427)
T PRK02889 189 QSALSSPEPIISPAWSP---DGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK-G-SNSAPAW---SPDGRTLAVALSR 260 (427)
T ss_pred eEeccCCCCcccceEcC---CCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC-C-CccceEE---CCCCCEEEEEEcc
Confidence 33446778899999999 99988877642 45999999888654322111 1 1223333 68888776 5677
Q ss_pred CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC-CCcE
Q 001391 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRSA 280 (1088)
Q Consensus 202 dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~-Dg~v 280 (1088)
+|...||.+.. .......+..+.+......|+|||+.++..+. ++..
T Consensus 261 ~g~~~Iy~~d~--------------------------------~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~ 308 (427)
T PRK02889 261 DGNSQIYTVNA--------------------------------DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAP 308 (427)
T ss_pred CCCceEEEEEC--------------------------------CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCc
Confidence 88878877650 11223444555555677889999998886664 4667
Q ss_pred EEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCC---cEEEEcCCCceeEEEcccCCCCeEEEE
Q 001391 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC---TCRVWGSDGKQLKMIKEHIGRGIWRCL 355 (1088)
Q Consensus 281 ~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg---~i~vWd~~~~~~~~~~~h~~~~V~~l~ 355 (1088)
.+|.+..... ..+.+ ...+ .......|+ +++|+..+.++ .|.+||+.+.....+.... ......
T Consensus 309 ~Iy~~~~~~g----~~~~l---t~~g--~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~--~~~~p~ 377 (427)
T PRK02889 309 QIYRMPASGG----AAQRV---TFTG--SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTT--RDESPS 377 (427)
T ss_pred EEEEEECCCC----ceEEE---ecCC--CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCC--CccCce
Confidence 7776543211 01111 2222 223356677 67777666554 5999999443344444332 246789
Q ss_pred EcCCCCEEEEEeCCC
Q 001391 356 YDSLSSLLVTAGFDS 370 (1088)
Q Consensus 356 ~~~dg~~l~tg~~Dg 370 (1088)
|+|||+.|+..+.++
T Consensus 378 ~spdg~~l~~~~~~~ 392 (427)
T PRK02889 378 FAPNGRYILYATQQG 392 (427)
T ss_pred ECCCCCEEEEEEecC
Confidence 999999887777544
No 249
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.81 E-value=1.3e-06 Score=102.88 Aligned_cols=230 Identities=12% Similarity=0.054 Sum_probs=137.9
Q ss_pred eEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE---CCCEEEEEEeccCCCCCCCCCCccccc
Q 001391 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF---GEKRVKLFELNFELSPNSQYQPETCVN 121 (1088)
Q Consensus 45 ~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~---gd~~v~iw~l~~~~~~~~~~~~~~~~~ 121 (1088)
.|.++|... .....+..+.. .+...+|+ |||+ .++.++ ++..|.+|++....
T Consensus 183 ~l~~~d~dg-~~~~~lt~~~~-~v~~p~wS-------pDG~---~lay~s~~~g~~~i~~~dl~~g~------------- 237 (435)
T PRK05137 183 RLAIMDQDG-ANVRYLTDGSS-LVLTPRFS-------PNRQ---EITYMSYANGRPRVYLLDLETGQ------------- 237 (435)
T ss_pred EEEEECCCC-CCcEEEecCCC-CeEeeEEC-------CCCC---EEEEEEecCCCCEEEEEECCCCc-------------
Confidence 899999754 44455555444 69999999 8883 333333 25689999987533
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEE-EEEcCCc--EEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEE
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDNS--IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS 198 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~la-sgs~Dg~--V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~s 198 (1088)
.+ .+..+.+.+...+|+| ||+.|+ +.+.++. |.+||+.+++... +..+. ....+..+ +||+..|+.
T Consensus 238 ~~---~l~~~~g~~~~~~~SP---DG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~-~~~~~~~~---spDG~~i~f 306 (435)
T PRK05137 238 RE---LVGNFPGMTFAPRFSP---DGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSP-AIDTSPSY---SPDGSQIVF 306 (435)
T ss_pred EE---EeecCCCcccCcEECC---CCCEEEEEEecCCCceEEEEECCCCceEE-ccCCC-CccCceeE---cCCCCEEEE
Confidence 12 2334556778899999 998765 5555555 7777888776533 33222 12223333 688887776
Q ss_pred Ee-cCC--eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEE
Q 001391 199 GT-IYN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (1088)
Q Consensus 199 g~-~dg--~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s 275 (1088)
.+ .+| .|.++|+. .+ ....+..+.+.+....|+|+|++|+..+
T Consensus 307 ~s~~~g~~~Iy~~d~~---------------------------------g~-~~~~lt~~~~~~~~~~~SpdG~~ia~~~ 352 (435)
T PRK05137 307 ESDRSGSPQLYVMNAD---------------------------------GS-NPRRISFGGGRYSTPVWSPRGDLIAFTK 352 (435)
T ss_pred EECCCCCCeEEEEECC---------------------------------CC-CeEEeecCCCcccCeEECCCCCEEEEEE
Confidence 55 333 56666765 22 2233333455667789999999998776
Q ss_pred CC---CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC------CcEEEEcCCCceeEEEc
Q 001391 276 DD---RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED------CTCRVWGSDGKQLKMIK 344 (1088)
Q Consensus 276 ~D---g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D------g~i~vWd~~~~~~~~~~ 344 (1088)
.+ ..|.+||+..+.. +.+ .....+....|+ +..|+..+.+ ..+.+.++++.....+.
T Consensus 353 ~~~~~~~i~~~d~~~~~~------~~l------t~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 353 QGGGQFSIGVMKPDGSGE------RIL------TSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred cCCCceEEEEEECCCCce------Eec------cCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 54 3577888755321 111 112235667787 4565554432 25777777665555554
Q ss_pred ccCCCCeEEEEEcC
Q 001391 345 EHIGRGIWRCLYDS 358 (1088)
Q Consensus 345 ~h~~~~V~~l~~~~ 358 (1088)
. .+ .+...+|+|
T Consensus 421 ~-~~-~~~~p~Wsp 432 (435)
T PRK05137 421 T-PG-DASDPAWSP 432 (435)
T ss_pred C-CC-CccCcccCC
Confidence 2 33 255556655
No 250
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.75 E-value=7.4e-07 Score=91.72 Aligned_cols=147 Identities=14% Similarity=0.268 Sum_probs=102.1
Q ss_pred EEEEeccCCCCCCCCEEEEEeC-----------CeEEEEECC-CCeeEEEEeeeCCcceEEEEecccccccCCCccceee
Q 001391 22 ALCFVHLPSHLSSLPFLLAGSG-----------SQVLLYDLE-AGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (1088)
Q Consensus 22 ~v~fs~~pd~~~~~~~laag~d-----------~~I~vwd~~-tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~ 89 (1088)
.+.++ |. |.+|++-.+ +...+|-+. .+..+..+.......|+.++|+ |+|. .
T Consensus 10 ~~~W~--~~----G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~Ws-------P~g~---~ 73 (194)
T PF08662_consen 10 KLHWQ--PS----GDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWS-------PNGN---E 73 (194)
T ss_pred EEEec--cc----CCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEEC-------cCCC---E
Confidence 45667 76 666665221 345555552 2344555555444469999999 7773 5
Q ss_pred EEEEEC--CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcC---CcEEEEEc
Q 001391 90 EVALFG--EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD---NSIRVWDI 164 (1088)
Q Consensus 90 ~la~~g--d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~D---g~V~iWd~ 164 (1088)
++++.| ++.|.+||++ .+.+..+. ...+..+.|+| +|++|++|+.+ |.|.+||.
T Consensus 74 favi~g~~~~~v~lyd~~----------------~~~i~~~~--~~~~n~i~wsP---~G~~l~~~g~~n~~G~l~~wd~ 132 (194)
T PF08662_consen 74 FAVIYGSMPAKVTLYDVK----------------GKKIFSFG--TQPRNTISWSP---DGRFLVLAGFGNLNGDLEFWDV 132 (194)
T ss_pred EEEEEccCCcccEEEcCc----------------ccEeEeec--CCCceEEEECC---CCCEEEEEEccCCCcEEEEEEC
Confidence 555555 5799999996 24455543 46678999999 99999998754 56999999
Q ss_pred CCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEec------CCeEEEEEec
Q 001391 165 SNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI------YNEIIVWKVD 211 (1088)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~------dg~I~vwd~~ 211 (1088)
++.+.+.+...+. ...+.+ +|+|.++++++. |+.++||+..
T Consensus 133 ~~~~~i~~~~~~~---~t~~~W---sPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 133 RKKKKISTFEHSD---ATDVEW---SPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CCCEEeeccccCc---EEEEEE---cCCCCEEEEEEeccceeccccEEEEEec
Confidence 9888887765442 234444 799999998763 7889999986
No 251
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.75 E-value=1e-06 Score=103.14 Aligned_cols=234 Identities=11% Similarity=0.029 Sum_probs=136.0
Q ss_pred CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC---CCEEEEEEeccCCCCCCCCCCcccc
Q 001391 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPETCV 120 (1088)
Q Consensus 44 ~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g---d~~v~iw~l~~~~~~~~~~~~~~~~ 120 (1088)
..|.++|.. |.....+..+.. .+...+|+ |||+ .++.++. ...|.+||+..+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~-~v~~p~wS-------PDG~---~la~~s~~~~~~~I~~~dl~~g~------------ 231 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPE-PIISPAWS-------PDGT---KLAYVSFESKKPVVYVHDLATGR------------ 231 (427)
T ss_pred cEEEEECCC-CCCceEeccCCC-CcccceEc-------CCCC---EEEEEEccCCCcEEEEEECCCCC------------
Confidence 468888864 444444544444 68899999 8873 3333332 2469999987543
Q ss_pred ccceeeeccCCCCcEEEEEEecccCCCCEEE-EEEcCCcEEEEEc--CCCceEEEeccCCceeEEEEeeecCCCCCcEEE
Q 001391 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDNSIRVWDI--SNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (1088)
Q Consensus 121 ~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la-sgs~Dg~V~iWd~--~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~ 197 (1088)
...+.. ..+.+.+.+|+| ||+.|+ +.+.++...||.+ ..+. ...+..+. ....+..+ ++|+..|+
T Consensus 232 -~~~l~~---~~g~~~~~~~SP---DG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~-~~~~~~~w---SpDG~~l~ 299 (427)
T PRK02889 232 -RRVVAN---FKGSNSAPAWSP---DGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSS-GIDTEPFF---SPDGRSIY 299 (427)
T ss_pred -EEEeec---CCCCccceEECC---CCCEEEEEEccCCCceEEEEECCCCC-cEECCCCC-CCCcCeEE---cCCCCEEE
Confidence 223332 334566899999 998776 5667887777665 3333 33443322 12223333 68888776
Q ss_pred EEe-cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC
Q 001391 198 SGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD 276 (1088)
Q Consensus 198 sg~-~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~ 276 (1088)
..+ ..|...+|.+... .+. ...+..+.......+|+|+|++++..+.
T Consensus 300 f~s~~~g~~~Iy~~~~~-------------------------------~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 300 FTSDRGGAPQIYRMPAS-------------------------------GGA-AQRVTFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred EEecCCCCcEEEEEECC-------------------------------CCc-eEEEecCCCCcCceEECCCCCEEEEEEc
Confidence 544 4567777776500 111 1112222233446789999999988776
Q ss_pred CC---cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC-Cc--EEEEcCCCceeEEEcccCC
Q 001391 277 DR---SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED-CT--CRVWGSDGKQLKMIKEHIG 348 (1088)
Q Consensus 277 Dg---~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D-g~--i~vWd~~~~~~~~~~~h~~ 348 (1088)
++ .|.+||+.+++. + .+.. ........|+ +..|+..+.+ |. +.+.+.+|+....+..+.+
T Consensus 348 ~~g~~~I~v~d~~~g~~------~-----~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g 415 (427)
T PRK02889 348 VGGAFKLYVQDLATGQV------T-----ALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQGG 415 (427)
T ss_pred cCCcEEEEEEECCCCCe------E-----EccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEeecCCC
Confidence 54 699999987533 1 1111 1223456777 4566555543 33 4444556776666665655
Q ss_pred CCeEEEEEcC
Q 001391 349 RGIWRCLYDS 358 (1088)
Q Consensus 349 ~~V~~l~~~~ 358 (1088)
.+...+|+|
T Consensus 416 -~~~~p~wsp 424 (427)
T PRK02889 416 -DVREPSWGP 424 (427)
T ss_pred -CCCCCccCC
Confidence 366667766
No 252
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.75 E-value=1.7e-05 Score=87.94 Aligned_cols=265 Identities=11% Similarity=0.020 Sum_probs=161.2
Q ss_pred CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE---------CCCEEEEEEeccCCCCCCCC
Q 001391 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF---------GEKRVKLFELNFELSPNSQY 114 (1088)
Q Consensus 44 ~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~---------gd~~v~iw~l~~~~~~~~~~ 114 (1088)
++|.|.|..+++.+.++..... -+++ +| ||++ ..+++.. .+..|.+||..+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~--P~~~-~s-------pDg~--~lyva~~~~~R~~~G~~~d~V~v~D~~t~------- 87 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFL--PNPV-VA-------SDGS--FFAHASTVYSRIARGKRTDYVEVIDPQTH------- 87 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCC--Ccee-EC-------CCCC--EEEEEeccccccccCCCCCEEEEEECccC-------
Confidence 7999999999999999987443 4555 88 7874 3455556 5789999999863
Q ss_pred CCccccccceeeeccC-------CCCcEEEEEEecccCCCCEEEEEE-c-CCcEEEEEcCCCceEEEeccCCceeEEEEe
Q 001391 115 QPETCVNLSLVQSLPR-------LSHWVFDVCFLKVCNGNRSLAIGC-S-DNSIRVWDISNSSIILEVHSPERCLLYSMK 185 (1088)
Q Consensus 115 ~~~~~~~~~~~~~l~~-------h~~~I~~v~f~p~~~d~~~lasgs-~-Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~ 185 (1088)
+.++.+.- ....-..++++| ||++|++.. . ++.|.+.|+.+++.+.++.-+....+|..
T Consensus 88 --------~~~~~i~~p~~p~~~~~~~~~~~~ls~---dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t- 155 (352)
T TIGR02658 88 --------LPIADIELPEGPRFLVGTYPWMTSLTP---DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPT- 155 (352)
T ss_pred --------cEEeEEccCCCchhhccCccceEEECC---CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEe-
Confidence 33333331 122345788999 999888765 3 79999999999999999887665555542
Q ss_pred eecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEE-EE
Q 001391 186 LWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRI-EW 264 (1088)
Q Consensus 186 ~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v-~~ 264 (1088)
+.+..+ +-+.||......+.... +. .......+.+-+..++.= .|
T Consensus 156 ----~e~~~~--~~~~Dg~~~~v~~d~~g---------------------~~-------~~~~~~vf~~~~~~v~~rP~~ 201 (352)
T TIGR02658 156 ----ANDTFF--MHCRDGSLAKVGYGTKG---------------------NP-------KIKPTEVFHPEDEYLINHPAY 201 (352)
T ss_pred ----cCCccE--EEeecCceEEEEecCCC---------------------ce-------EEeeeeeecCCccccccCCce
Confidence 122222 23345555544443100 00 000000111101111110 34
Q ss_pred cC-CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeee-----ccCcceEEEEEC--CCEEEEEe----------C
Q 001391 265 SS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY-----GHNARVWDCCLT--DSFIITAG----------E 326 (1088)
Q Consensus 265 sp-~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~-----~h~~~I~~v~~~--~~~l~sg~----------~ 326 (1088)
.+ +|+++....+ |+|.+-|+....... ...+...... -....+.-++++ ++.++... .
T Consensus 202 ~~~dg~~~~vs~e-G~V~~id~~~~~~~~---~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~ 277 (352)
T TIGR02658 202 SNKSGRLVWPTYT-GKIFQIDLSSGDAKF---LPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTA 277 (352)
T ss_pred EcCCCcEEEEecC-CeEEEEecCCCccee---cceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCC
Confidence 55 7777766666 999999976643210 1111100110 022333447887 45555532 1
Q ss_pred CCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC-EEEEEe-CCCCEEEEEcCC
Q 001391 327 DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAG-FDSAIKVHQFQA 379 (1088)
Q Consensus 327 Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~-~l~tg~-~Dg~I~iwd~~~ 379 (1088)
.+.|.++|. +++.+..+..-. .++.++++||++ +|++.. .++.|.++|..+
T Consensus 278 ~~~V~ViD~~t~kvi~~i~vG~--~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 278 SRFLFVVDAKTGKRLRKIELGH--EIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred CCEEEEEECCCCeEEEEEeCCC--ceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 247999999 777787776432 599999999999 877666 578899999854
No 253
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.73 E-value=7.6e-07 Score=91.60 Aligned_cols=155 Identities=14% Similarity=0.273 Sum_probs=103.1
Q ss_pred EEEEEecccCCCCEEEEEEc----------CCcEEEEEcCC-CceEEEeccCCceeEEEEeeecCCCCCcEEEE--EecC
Q 001391 136 FDVCFLKVCNGNRSLAIGCS----------DNSIRVWDISN-SSIILEVHSPERCLLYSMKLWGDNLEALRIAS--GTIY 202 (1088)
Q Consensus 136 ~~v~f~p~~~d~~~lasgs~----------Dg~V~iWd~~~-~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~s--g~~d 202 (1088)
..+.|+| +|++|++-.. -+...+|.++. ......+.......+..+++ +|++..+|. |..+
T Consensus 9 ~~~~W~~---~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~W---sP~g~~favi~g~~~ 82 (194)
T PF08662_consen 9 AKLHWQP---SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAW---SPNGNEFAVIYGSMP 82 (194)
T ss_pred EEEEecc---cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEE---CcCCCEEEEEEccCC
Confidence 3567788 8876655332 12355555532 23344443333333666666 677777544 5567
Q ss_pred CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC---Cc
Q 001391 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD---RS 279 (1088)
Q Consensus 203 g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D---g~ 279 (1088)
+.|.+||++ ...+..+. ...+..|.|+|+|+++++++.+ |.
T Consensus 83 ~~v~lyd~~----------------------------------~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~ 126 (194)
T PF08662_consen 83 AKVTLYDVK----------------------------------GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGD 126 (194)
T ss_pred cccEEEcCc----------------------------------ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcE
Confidence 899999986 33444443 5677899999999999998754 66
Q ss_pred EEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeC------CCcEEEEcCCCceeEEEc
Q 001391 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE------DCTCRVWGSDGKQLKMIK 344 (1088)
Q Consensus 280 v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~------Dg~i~vWd~~~~~~~~~~ 344 (1088)
|.+||.++. +.+ ....| ..+..++|+ +.+|+++.. |..++||+..|+.+....
T Consensus 127 l~~wd~~~~--------~~i---~~~~~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~ 187 (194)
T PF08662_consen 127 LEFWDVRKK--------KKI---STFEH-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKP 187 (194)
T ss_pred EEEEECCCC--------EEe---ecccc-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEecc
Confidence 999999974 333 22233 347899998 688888764 788999999998776543
No 254
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.72 E-value=8.9e-06 Score=89.46 Aligned_cols=286 Identities=13% Similarity=0.176 Sum_probs=179.0
Q ss_pred ceEEecCCCc-----eeeeeEEEEEeccCCCCCCCCEEEEEeC-C---------------eEEEEECCCCeeEEEEeeeC
Q 001391 6 LSEWRLDVGQ-----YLGEISALCFVHLPSHLSSLPFLLAGSG-S---------------QVLLYDLEAGTLIRPFQVFH 64 (1088)
Q Consensus 6 i~iWdl~~g~-----~~~~V~~v~fs~~pd~~~~~~~laag~d-~---------------~I~vwd~~tg~~~~~~~~~~ 64 (1088)
|.+|.-.... ....|.-+.|| |. ++||.+=+. + .+.|||+.+|.++..|.+..
T Consensus 55 V~~~~g~~~~~l~~~~~~~V~~~~fS--P~----~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~ 128 (561)
T COG5354 55 VECWGGPSKAKLVRFRHPDVKYLDFS--PN----EKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGIS 128 (561)
T ss_pred eEEccccchhheeeeecCCceecccC--cc----cceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccC
Confidence 5666644433 23568899999 99 999998442 2 49999999999999998744
Q ss_pred Ccc--eE-EEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEe
Q 001391 65 GIR--LH-GISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFL 141 (1088)
Q Consensus 65 ~~~--V~-~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~ 141 (1088)
. + .+ -++|+ -+. .++|---...+.|+++. +.... -..+.++ ...|....|+
T Consensus 129 q-~~~~Wp~~k~s-------~~D----~y~ARvv~~sl~i~e~t-~n~~~-----------~p~~~lr--~~gi~dFsis 182 (561)
T COG5354 129 Q-PYLGWPVLKFS-------IDD----KYVARVVGSSLYIHEIT-DNIEE-----------HPFKNLR--PVGILDFSIS 182 (561)
T ss_pred C-cccccceeeee-------ecc----hhhhhhccCeEEEEecC-Ccccc-----------Cchhhcc--ccceeeEEec
Confidence 3 3 34 56777 332 44444457889999983 32111 1112222 3568888999
Q ss_pred cccCCCCEEEE-----EEcCCcEEEEEcCCCceEEE--eccCCceeEEEEeeecCCCCCcEEEE--Ee-------c--CC
Q 001391 142 KVCNGNRSLAI-----GCSDNSIRVWDISNSSIILE--VHSPERCLLYSMKLWGDNLEALRIAS--GT-------I--YN 203 (1088)
Q Consensus 142 p~~~d~~~las-----gs~Dg~V~iWd~~~~~~~~~--~~~~~~~~~~s~~~~~~s~~~~~l~s--g~-------~--dg 203 (1088)
|.. ++..||. ++.++++++|.+..+..+.+ +..-..+ .+.+. +.|..++. -+ . ..
T Consensus 183 P~~-n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~-----qLkW~-~~g~~ll~l~~t~~ksnKsyfges 255 (561)
T COG5354 183 PEG-NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGV-----QLKWQ-VLGKYLLVLVMTHTKSNKSYFGES 255 (561)
T ss_pred CCC-CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeeccc-----EEEEe-cCCceEEEEEEEeeecccceeccc
Confidence 932 3444554 46788999999986655433 2221121 11111 22333221 11 1 13
Q ss_pred eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEE--ECCCcEE
Q 001391 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV--SDDRSAR 281 (1088)
Q Consensus 204 ~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~--s~Dg~v~ 281 (1088)
++.++++. ...+.....-.++|...+|.|.++.+++. ..+..+.
T Consensus 256 nLyl~~~~----------------------------------e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s 301 (561)
T COG5354 256 NLYLLRIT----------------------------------ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVS 301 (561)
T ss_pred eEEEEeec----------------------------------ccccceeccccccceeeeecccCCceeEEeccccccee
Confidence 44555543 22233333568999999999999876654 4788899
Q ss_pred EEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC---CcEEEEcCCCce--eEEEcccCCCCeEEE
Q 001391 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSDGKQ--LKMIKEHIGRGIWRC 354 (1088)
Q Consensus 282 iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D---g~i~vWd~~~~~--~~~~~~h~~~~V~~l 354 (1088)
++|++.. .........=..+.|+ ..+++.++.| |.+-+||..++. +..+.+.. ..-+
T Consensus 302 ~~~lr~N-------------l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n---~s~~ 365 (561)
T COG5354 302 VFDLRGN-------------LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN---TSYC 365 (561)
T ss_pred ecccccc-------------eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC---ceEe
Confidence 9998874 1344444444556676 5788887766 679999995543 33455443 4567
Q ss_pred EEcCCCCEEEEEe------CCCCEEEEEcCCC
Q 001391 355 LYDSLSSLLVTAG------FDSAIKVHQFQAF 380 (1088)
Q Consensus 355 ~~~~dg~~l~tg~------~Dg~I~iwd~~~~ 380 (1088)
.|+||++++.+.. .|..|+||++.+.
T Consensus 366 ~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 366 DWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred eccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 8999999887764 4889999999654
No 255
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.71 E-value=3.2e-05 Score=87.75 Aligned_cols=286 Identities=10% Similarity=0.078 Sum_probs=181.3
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCe---------------eEEEEeeeCCcceEEEEecccccccC
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT---------------LIRPFQVFHGIRLHGISCNFINCTEG 81 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~---------------~~~~~~~~~~~~V~~i~~s~~~~~~~ 81 (1088)
....|++|. .. ..|+|+|+ ||.++|-.+.+.. .-.++.+|.+ .|.-+.|.
T Consensus 15 vkL~c~~WN--ke----~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~-sV~vvTWN------- 80 (1189)
T KOG2041|consen 15 VKLHCAEWN--KE----SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNA-SVMVVTWN------- 80 (1189)
T ss_pred ceEEEEEEc--cc----CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcc-eEEEEEec-------
Confidence 456799999 76 67999987 8999999875421 1235566665 79999998
Q ss_pred CCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEE
Q 001391 82 SVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIR 160 (1088)
Q Consensus 82 ~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~ 160 (1088)
... ..|.+++ +|-|.||-+-.+. +-....-.....-|.++.|+. ||+.++....||.|.
T Consensus 81 e~~----QKLTtSDt~GlIiVWmlykgs-------------W~EEMiNnRnKSvV~SmsWn~---dG~kIcIvYeDGavI 140 (1189)
T KOG2041|consen 81 ENN----QKLTTSDTSGLIIVWMLYKGS-------------WCEEMINNRNKSVVVSMSWNL---DGTKICIVYEDGAVI 140 (1189)
T ss_pred ccc----ccccccCCCceEEEEeeeccc-------------HHHHHhhCcCccEEEEEEEcC---CCcEEEEEEccCCEE
Confidence 333 6777776 8999999887533 111111223446799999999 999999999999988
Q ss_pred EEEcCCCceE-EEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEe
Q 001391 161 VWDISNSSII-LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1088)
Q Consensus 161 iWd~~~~~~~-~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 239 (1088)
+=.++..+.. +.+++.. +..+.+ ++|...+..+-..|.+.++|.+.+=... +.+
T Consensus 141 VGsvdGNRIwgKeLkg~~---l~hv~w---s~D~~~~Lf~~ange~hlydnqgnF~~K-------------------l~~ 195 (1189)
T KOG2041|consen 141 VGSVDGNRIWGKELKGQL---LAHVLW---SEDLEQALFKKANGETHLYDNQGNFERK-------------------LEK 195 (1189)
T ss_pred EEeeccceecchhcchhe---ccceee---cccHHHHHhhhcCCcEEEecccccHHHh-------------------hhh
Confidence 7666543322 1122111 111211 4666777777788999999977110000 000
Q ss_pred cccccceeeeEEEeCCCCCEEEEEE--------cCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcce
Q 001391 240 QDQQHTAVNLFRLVGHEGSIFRIEW--------SSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311 (1088)
Q Consensus 240 ~~~~~~~~~~~~~~gh~~~V~~v~~--------sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I 311 (1088)
-. .......+......|-.+.| -|+...++.|...|.+.|-.-.+... + .+......|
T Consensus 196 ~c---~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~-------P----vv~dtgm~~ 261 (1189)
T KOG2041|consen 196 DC---EVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE-------P----VVVDTGMKI 261 (1189)
T ss_pred ce---EEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC-------C----eEEecccEe
Confidence 00 00000011111122444444 25888999999999998876655422 1 222333567
Q ss_pred EEEEEC--CCEEEEEeCC---------CcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 312 WDCCLT--DSFIITAGED---------CTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 312 ~~v~~~--~~~l~sg~~D---------g~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
..+.|+ |..|+.+|.+ +.|.++..-|+.+.+++.... .|++++|-..|-.++.+ .|+.|.+=+++
T Consensus 262 vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~-~It~lsWEg~gLriA~A-vdsfiyfanIR 337 (1189)
T KOG2041|consen 262 VGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGS-CITGLSWEGTGLRIAIA-VDSFIYFANIR 337 (1189)
T ss_pred ecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCc-eeeeeEEcCCceEEEEE-ecceEEEEeec
Confidence 777787 6677777644 357777778888888887766 69999998877666554 47777776664
No 256
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.68 E-value=8.3e-06 Score=94.33 Aligned_cols=284 Identities=10% Similarity=0.071 Sum_probs=163.0
Q ss_pred CCCCceEEecCCCcee------eeeE-EEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEe
Q 001391 2 GKKDLSEWRLDVGQYL------GEIS-ALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISC 73 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~~~------~~V~-~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~ 73 (1088)
.++.|..+|..+|+.. +.+. +.... +..++++. ++.|..+|..+|+++.+..... .+.+
T Consensus 73 ~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~--------~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~--~~~~--- 139 (377)
T TIGR03300 73 ADGTVVALDAETGKRLWRVDLDERLSGGVGAD--------GGLVFVGTEKGEVIALDAEDGKELWRAKLSS--EVLS--- 139 (377)
T ss_pred CCCeEEEEEccCCcEeeeecCCCCcccceEEc--------CCEEEEEcCCCEEEEEECCCCcEeeeeccCc--eeec---
Confidence 4567888888887721 1221 22222 34566655 7999999999999988766422 1221
Q ss_pred cccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcE-----EEEEEecccCCCC
Q 001391 74 NFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWV-----FDVCFLKVCNGNR 148 (1088)
Q Consensus 74 s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I-----~~v~f~p~~~d~~ 148 (1088)
+|. ..++ .+++..+++.+..||.+++. .+-........+ .+..+ . + .
T Consensus 140 ~p~----v~~~----~v~v~~~~g~l~a~d~~tG~---------------~~W~~~~~~~~~~~~~~~sp~~-~---~-~ 191 (377)
T TIGR03300 140 PPL----VANG----LVVVRTNDGRLTALDAATGE---------------RLWTYSRVTPALTLRGSASPVI-A---D-G 191 (377)
T ss_pred CCE----EECC----EEEEECCCCeEEEEEcCCCc---------------eeeEEccCCCceeecCCCCCEE-E---C-C
Confidence 111 0232 66666778999999987543 111111111100 01111 1 3 4
Q ss_pred EEEEEEcCCcEEEEEcCCCceEEEecc--CCce-e---EEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCC
Q 001391 149 SLAIGCSDNSIRVWDISNSSIILEVHS--PERC-L---LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSP 222 (1088)
Q Consensus 149 ~lasgs~Dg~V~iWd~~~~~~~~~~~~--~~~~-~---~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~ 222 (1088)
.++.+..++.+..+|..+++.+.+... +... . ...... .....+..++.++.+|.+..+|..
T Consensus 192 ~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~-~p~~~~~~vy~~~~~g~l~a~d~~----------- 259 (377)
T TIGR03300 192 GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDG-DPVVDGGQVYAVSYQGRVAALDLR----------- 259 (377)
T ss_pred EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCC-ccEEECCEEEEEEcCCEEEEEECC-----------
Confidence 677788889999999999987654321 1100 0 000000 000124577778889999999987
Q ss_pred CCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeece
Q 001391 223 EGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS 302 (1088)
Q Consensus 223 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~ 302 (1088)
+++.+..... ...... ...+..++.++.||.+..+|..+++. +-..
T Consensus 260 ----------------------tG~~~W~~~~--~~~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~--------~W~~ 305 (377)
T TIGR03300 260 ----------------------SGRVLWKRDA--SSYQGP--AVDDNRLYVTDADGVVVALDRRSGSE--------LWKN 305 (377)
T ss_pred ----------------------CCcEEEeecc--CCccCc--eEeCCEEEEECCCCeEEEEECCCCcE--------EEcc
Confidence 3333332221 111111 12467788888999999999988642 1100
Q ss_pred eeeccCcceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEE
Q 001391 303 VLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVH 375 (1088)
Q Consensus 303 ~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iw 375 (1088)
...+ .....+....++.+++++.+|.++++|. +|+.+..+..+.. +++.--...++ .|+.++.||.|..+
T Consensus 306 ~~~~-~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~-~~~~sp~~~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 306 DELK-YRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGS-GIASPPVVVGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred cccc-CCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC-ccccCCEEECC-EEEEEeCCceEEEe
Confidence 0111 1112222334789999999999999999 7999988876654 34332222233 48888999988765
No 257
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.67 E-value=0.00015 Score=82.50 Aligned_cols=295 Identities=11% Similarity=0.095 Sum_probs=157.7
Q ss_pred EEEEECC----CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeC----CCcEEEEcCC---C
Q 001391 271 LVSVSDD----RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE----DCTCRVWGSD---G 337 (1088)
Q Consensus 271 l~s~s~D----g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~----Dg~i~vWd~~---~ 337 (1088)
++.|+.+ +.|..|+++.... ....+. . .........++++ +.+|++..+ ++.|..|++. +
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g----~l~~~~--~-~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g 74 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETG----TLTLVQ--T-VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG 74 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTT----EEEEEE--E-EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCC----CceEee--e-ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc
Confidence 4455555 6888888833211 012222 1 1122334456675 678888777 5789999882 3
Q ss_pred ce--eEEEcccCCCCeEEEEEcCCCCEEEEEeC-CCCEEEEEcCCC-CCCcccCCccccccCCCcceEEe--eeCCCccc
Q 001391 338 KQ--LKMIKEHIGRGIWRCLYDSLSSLLVTAGF-DSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSI--KIPNFSEQ 411 (1088)
Q Consensus 338 ~~--~~~~~~h~~~~V~~l~~~~dg~~l~tg~~-Dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 411 (1088)
+. +..... .+.....++++|++++|+++.. +|.|.++++... .+... ...+.. ..++.
T Consensus 75 ~L~~~~~~~~-~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~------------~~~~~~~g~g~~~--- 138 (345)
T PF10282_consen 75 TLTLLNSVPS-GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEV------------VQTVRHEGSGPNP--- 138 (345)
T ss_dssp EEEEEEEEEE-SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEE------------EEEEESEEEESST---
T ss_pred eeEEeeeecc-CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCccccee------------eeecccCCCCCcc---
Confidence 32 233332 2334668999999999988875 899999999531 11000 000000 00110
Q ss_pred eeeccCCCCceEEEEeccCCeEEEEec--CCeEEEEEeccCCc-ceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEE
Q 001391 412 IRLTDSKSEYVRCLHLTSEDTLYIATN--HGYLYHTKLCDMDS-VNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVA 488 (1088)
Q Consensus 412 ~~~~~~~~~~V~~l~~s~~~~ll~~t~--~g~i~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la 488 (1088)
.........++.++|+++++..+. .+.|+.+++..... .........+.+..-.-+.+++++ ....+
T Consensus 139 ---~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg-------~~~Yv 208 (345)
T PF10282_consen 139 ---DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDG-------KYAYV 208 (345)
T ss_dssp ---TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTS-------SEEEE
T ss_pred ---cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCc-------CEEEE
Confidence 011234578899999997766654 34577776644331 111111222333333444454432 23445
Q ss_pred EecCCCCEEEEEEc--CCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEEC-CCCeEEEEecCCCCCcccccCCc
Q 001391 489 LGDGKGNMTIVRVV--GDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTAD-PKGRLKLWQLCDPFSSVCYESSK 565 (1088)
Q Consensus 489 ~g~~dg~I~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~-~dg~i~vwd~~~~~~~~~~~~~~ 565 (1088)
+.-.++.|.+|++. ++......... .............-.+++|||++|+++. ..+.|.+|+++... .
T Consensus 209 ~~e~s~~v~v~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~--g------ 279 (345)
T PF10282_consen 209 VNELSNTVSVFDYDPSDGSLTEIQTIS-TLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT--G------ 279 (345)
T ss_dssp EETTTTEEEEEEEETTTTEEEEEEEEE-SCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT--T------
T ss_pred ecCCCCcEEEEeecccCCceeEEEEee-eccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC--C------
Confidence 56668899999998 33221111111 1111111111233356899999988654 56789999995321 0
Q ss_pred ccceeeeeeeccccCceEEEEEeeeCCCEEEEEc-CCCcEEEEeCC
Q 001391 566 TNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGD-LRGNLVLFPLL 610 (1088)
Q Consensus 566 ~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs-~dg~I~Iw~~~ 610 (1088)
.+.....+. .....-..++++|+|++|+++. .++.|.+|+++
T Consensus 280 --~l~~~~~~~-~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 280 --TLTLVQTVP-TGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp --TEEEEEEEE-ESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred --ceEEEEEEe-CCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 122222222 1233467899999999999887 45689999875
No 258
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.66 E-value=0.0003 Score=79.97 Aligned_cols=284 Identities=15% Similarity=0.168 Sum_probs=166.4
Q ss_pred CCCceEEec--CCCce--------eeeeEEEEEeccCCCCCCCCEEEEEe-----CCeEEEEECCC--Cee--EEEEeee
Q 001391 3 KKDLSEWRL--DVGQY--------LGEISALCFVHLPSHLSSLPFLLAGS-----GSQVLLYDLEA--GTL--IRPFQVF 63 (1088)
Q Consensus 3 d~~i~iWdl--~~g~~--------~~~V~~v~fs~~pd~~~~~~~laag~-----d~~I~vwd~~t--g~~--~~~~~~~ 63 (1088)
.+.|.++++ .+++. ...-+.|+++ |+ +++|.+.. .+.|..|.+.. |++ +.+...
T Consensus 12 ~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~--~~----~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~- 84 (345)
T PF10282_consen 12 GGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVS--PD----GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS- 84 (345)
T ss_dssp STEEEEEEEETTTTEEEEEEEEEESSSECCEEE---TT----SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-
T ss_pred CCcEEEEEEcCCCCCceEeeeecCCCCCceEEEE--eC----CCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-
Confidence 366888888 55551 1224578888 88 78888864 26899999875 433 333332
Q ss_pred CCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeec----------cCCC
Q 001391 64 HGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL----------PRLS 132 (1088)
Q Consensus 64 ~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l----------~~h~ 132 (1088)
.+.....++++ |+++ .++++ +++++|.++++..... .......+ ..-.
T Consensus 85 ~g~~p~~i~~~-------~~g~---~l~vany~~g~v~v~~l~~~g~-----------l~~~~~~~~~~g~g~~~~rq~~ 143 (345)
T PF10282_consen 85 GGSSPCHIAVD-------PDGR---FLYVANYGGGSVSVFPLDDDGS-----------LGEVVQTVRHEGSGPNPDRQEG 143 (345)
T ss_dssp SSSCEEEEEEC-------TTSS---EEEEEETTTTEEEEEEECTTSE-----------EEEEEEEEESEEEESSTTTTSS
T ss_pred CCCCcEEEEEe-------cCCC---EEEEEEccCCeEEEEEccCCcc-----------cceeeeecccCCCCCccccccc
Confidence 34456778888 7773 44444 4699999999986420 01111111 1223
Q ss_pred CcEEEEEEecccCCCCEEEEEE-cCCcEEEEEcCCCc--e--EEEeccCCceeEEEEeeecCCCCCcEEEE-EecCCeEE
Q 001391 133 HWVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISNSS--I--ILEVHSPERCLLYSMKLWGDNLEALRIAS-GTIYNEII 206 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasgs-~Dg~V~iWd~~~~~--~--~~~~~~~~~~~~~s~~~~~~s~~~~~l~s-g~~dg~I~ 206 (1088)
...+++.|+| ++++|++.. ....|.+|++.... . ...+..+..+.-..+.| ++++.+++. ...+++|.
T Consensus 144 ~h~H~v~~~p---dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f---~pdg~~~Yv~~e~s~~v~ 217 (345)
T PF10282_consen 144 PHPHQVVFSP---DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAF---SPDGKYAYVVNELSNTVS 217 (345)
T ss_dssp TCEEEEEE-T---TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE----TTSSEEEEEETTTTEEE
T ss_pred ccceeEEECC---CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEE---cCCcCEEEEecCCCCcEE
Confidence 5678999999 999877753 34579999997654 3 23334444444555665 467776655 45678899
Q ss_pred EEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe----C--CCCCEEEEEEcCCCCEEEEEE-CCCc
Q 001391 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV----G--HEGSIFRIEWSSCGSKLVSVS-DDRS 279 (1088)
Q Consensus 207 vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~----g--h~~~V~~v~~sp~g~~l~s~s-~Dg~ 279 (1088)
++++.... + ....+.... + .......|+++|||++|.++. ...+
T Consensus 218 v~~~~~~~--------------------g---------~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~s 268 (345)
T PF10282_consen 218 VFDYDPSD--------------------G---------SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNS 268 (345)
T ss_dssp EEEEETTT--------------------T---------EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTE
T ss_pred EEeecccC--------------------C---------ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCE
Confidence 99887111 0 111222221 1 123688999999999876654 5678
Q ss_pred EEEEEcCCC-cccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEe-CCCcEEEEcC---CCceeEEEcccCCCCeE
Q 001391 280 ARIWEVRAE-YWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG-EDCTCRVWGS---DGKQLKMIKEHIGRGIW 352 (1088)
Q Consensus 280 v~iWd~~~~-~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~-~Dg~i~vWd~---~~~~~~~~~~h~~~~V~ 352 (1088)
|.+|++... .. .+.+. .........+.++++ +++|+++. .++.|.+|++ +|.+...-.........
T Consensus 269 I~vf~~d~~~g~-----l~~~~--~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ 341 (345)
T PF10282_consen 269 ISVFDLDPATGT-----LTLVQ--TVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPV 341 (345)
T ss_dssp EEEEEECTTTTT-----EEEEE--EEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEE
T ss_pred EEEEEEecCCCc-----eEEEE--EEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCE
Confidence 999999432 11 23443 222233447888886 67777666 5678999987 34433332222222355
Q ss_pred EEEE
Q 001391 353 RCLY 356 (1088)
Q Consensus 353 ~l~~ 356 (1088)
||.|
T Consensus 342 ci~f 345 (345)
T PF10282_consen 342 CIVF 345 (345)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 6654
No 259
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.66 E-value=1.6e-07 Score=115.88 Aligned_cols=188 Identities=15% Similarity=0.197 Sum_probs=137.5
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g 95 (1088)
...|.++.-+ |. ..+-++|+ ||.|++|.+..++.+..++.....+|..+.|+ ..|+ ..-++-|
T Consensus 2208 v~~v~r~~sH--p~----~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~-------~qGn---k~~i~d~ 2271 (2439)
T KOG1064|consen 2208 VENVRRMTSH--PS----DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFN-------HQGN---KFGIVDG 2271 (2439)
T ss_pred cCceeeecCC--CC----CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhc-------ccCC---ceeeecc
Confidence 3446666666 65 66777776 79999999999999888886555689999998 6663 5566677
Q ss_pred CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE---cCCcEEEEEcCCC---ce
Q 001391 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC---SDNSIRVWDISNS---SI 169 (1088)
Q Consensus 96 d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs---~Dg~V~iWd~~~~---~~ 169 (1088)
||.+.+|.... +.....+.|...-.+.+|.. ..+++++ .++.+.+||..-. ..
T Consensus 2272 dg~l~l~q~~p----------------k~~~s~qchnk~~~Df~Fi~-----s~~~tag~s~d~~n~~lwDtl~~~~~s~ 2330 (2439)
T KOG1064|consen 2272 DGDLSLWQASP----------------KPYTSWQCHNKALSDFRFIG-----SLLATAGRSSDNRNVCLWDTLLPPMNSL 2330 (2439)
T ss_pred CCceeecccCC----------------cceeccccCCccccceeeee-----hhhhccccCCCCCcccchhcccCcccce
Confidence 99999999872 45566678888888898853 6677765 4778999997432 22
Q ss_pred EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeee
Q 001391 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (1088)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 249 (1088)
+. .+|... ...+++ -|...++++|+.+|.|++||++ ..+.+
T Consensus 2331 v~--~~H~~g-aT~l~~---~P~~qllisggr~G~v~l~D~r---------------------------------qrql~ 2371 (2439)
T KOG1064|consen 2331 VH--TCHDGG-ATVLAY---APKHQLLISGGRKGEVCLFDIR---------------------------------QRQLR 2371 (2439)
T ss_pred ee--eecCCC-ceEEEE---cCcceEEEecCCcCcEEEeehH---------------------------------HHHHH
Confidence 33 223221 223333 4788999999999999999998 44455
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcc
Q 001391 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (1088)
Q Consensus 250 ~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~ 290 (1088)
+.++. +. ...++++++..|.++||++.....
T Consensus 2372 h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2372 HTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred HHhhh---------hh-hhheeeccCcccceEEEEccccch
Confidence 44443 34 567899999999999999988543
No 260
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=3.3e-05 Score=86.20 Aligned_cols=275 Identities=11% Similarity=0.144 Sum_probs=161.1
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE----
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL---- 93 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~---- 93 (1088)
.+....++| ++ |+++|.+.+..++|++..++..+.+... . ++..+.||| -+ ..|.+
T Consensus 35 ~~~~v~~~S--~~----G~lfA~~~~~~v~i~~~~~~~~~lt~~~--~-~~~~L~fSP-------~g----~yL~T~e~~ 94 (566)
T KOG2315|consen 35 RPCNVFAYS--NN----GRLFAYSDNQVVKVFEIATLKVVLCVEL--K-KTYDLLFSP-------KG----NYLLTWEPW 94 (566)
T ss_pred CcceeEEEc--CC----CcEEEEEcCCeEEEEEccCCcEEEEecc--c-eeeeeeecc-------cc----ccccccccc
Confidence 345667788 77 8999999999999999999865444443 2 689999995 43 33333
Q ss_pred --ECC-----CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC
Q 001391 94 --FGE-----KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (1088)
Q Consensus 94 --~gd-----~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~ 166 (1088)
.++ ..+.+|++++.. ....-..+-..+ |+..|++ |..+ +.--..+.+.+|+..+
T Consensus 95 ~i~~~~~~~~pn~~v~~vet~~-------------~~s~~q~k~Q~~--W~~qfs~---dEsl-~arlv~nev~f~~~~~ 155 (566)
T KOG2315|consen 95 AIYGPKNASNPNVLVYNVETGV-------------QRSQIQKKMQNG--WVPQFSI---DESL-AARLVSNEVQFYDLGS 155 (566)
T ss_pred ccccCCCCCCCceeeeeeccce-------------ehhheehhhhcC--ccccccc---chhh-hhhhhcceEEEEecCC
Confidence 333 346799988621 111111112223 5888987 5543 2233356799999987
Q ss_pred CceEE-EeccCCceeEEEEeeecCCCCCcEEEE-----EecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEec
Q 001391 167 SSIIL-EVHSPERCLLYSMKLWGDNLEALRIAS-----GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240 (1088)
Q Consensus 167 ~~~~~-~~~~~~~~~~~s~~~~~~s~~~~~l~s-----g~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 240 (1088)
.+.+. .++. .+...+.+. ..|....||+ ++.-+.++||.+.......
T Consensus 156 f~~~~~kl~~-~~i~~f~lS---pgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~----------------------- 208 (566)
T KOG2315|consen 156 FKTIQHKLSV-SGITMLSLS---PGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ----------------------- 208 (566)
T ss_pred ccceeeeeec-cceeeEEec---CCCCCceEEEEccCCCCCCcEEEEeccccccccc-----------------------
Confidence 54432 2321 121122221 1223344444 4566778888875111100
Q ss_pred ccccceeeeEEEeCCCCCEEEEEEcCCCCEE---EEEEC---------CCcEEEEEcCCCcccCCCCceeeeceeeeccC
Q 001391 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL---VSVSD---------DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN 308 (1088)
Q Consensus 241 ~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l---~s~s~---------Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~ 308 (1088)
....+.| ....=..+.|++-|.-| ++... ..++++.++..... . .-....
T Consensus 209 -----~~a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~--------~---V~L~k~ 270 (566)
T KOG2315|consen 209 -----PVANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV--------S---VPLLKE 270 (566)
T ss_pred -----hhhhccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE--------E---EecCCC
Confidence 0000001 01112234555555421 22222 34677777663221 1 223346
Q ss_pred cceEEEEEC--CC--EEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCC---CCEEEEEcCC
Q 001391 309 ARVWDCCLT--DS--FIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD---SAIKVHQFQA 379 (1088)
Q Consensus 309 ~~I~~v~~~--~~--~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~D---g~I~iwd~~~ 379 (1088)
++|.++.|+ +. -++-|-.=.++.|+|+.++++..+.. + +=.++-|+|.|++|+.+|.+ |.+-+||...
T Consensus 271 GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~e--g-pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 271 GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPE--G-PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred CCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCC--C-CccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence 899999998 32 34455667889999999999888743 3 44688999999999998865 7999999843
No 261
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.62 E-value=5.3e-06 Score=97.52 Aligned_cols=190 Identities=15% Similarity=0.093 Sum_probs=120.0
Q ss_pred eeccCCCCcEEEEEEecccCCCCEEEEEEcC---CcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEE-EEec
Q 001391 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD---NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTI 201 (1088)
Q Consensus 126 ~~l~~h~~~I~~v~f~p~~~d~~~lasgs~D---g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~-sg~~ 201 (1088)
+.+..+...+.+.+|+| ||++|+.+..+ ..|++||+.+++........ ....+..+ ++++..|+ +.+.
T Consensus 183 ~~l~~~~~~~~~p~~Sp---dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~--~~~~~~~~---spDg~~l~~~~~~ 254 (417)
T TIGR02800 183 QTITRSREPILSPAWSP---DGQKLAYVSFESGKPEIYVQDLATGQREKVASFP--GMNGAPAF---SPDGSKLAVSLSK 254 (417)
T ss_pred EEeecCCCceecccCCC---CCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCC--CCccceEE---CCCCCEEEEEECC
Confidence 33445667789999999 99998877643 47999999887654332211 12233444 67887665 4444
Q ss_pred CC--eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC-C
Q 001391 202 YN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD-R 278 (1088)
Q Consensus 202 dg--~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D-g 278 (1088)
++ .|.+|++. ++ ....+..+........|+|+|++|+.++.. +
T Consensus 255 ~~~~~i~~~d~~---------------------------------~~-~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g 300 (417)
T TIGR02800 255 DGNPDIYVMDLD---------------------------------GK-QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG 300 (417)
T ss_pred CCCccEEEEECC---------------------------------CC-CEEECCCCCCCCCCEEECCCCCEEEEEECCCC
Confidence 44 47777876 22 123334444455567899999988776653 3
Q ss_pred --cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCC---cEEEEcCCCceeEEEcccCCCCe
Q 001391 279 --SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC---TCRVWGSDGKQLKMIKEHIGRGI 351 (1088)
Q Consensus 279 --~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg---~i~vWd~~~~~~~~~~~h~~~~V 351 (1088)
.|.++|+.+++. + .+..+...+....|+ +.+++..+.++ .|.+||+.+.....+.... ..
T Consensus 301 ~~~iy~~d~~~~~~------~-----~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~--~~ 367 (417)
T TIGR02800 301 SPQIYMMDADGGEV------R-----RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTG--LD 367 (417)
T ss_pred CceEEEEECCCCCE------E-----EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCC--CC
Confidence 577777765422 1 233344456677787 56777777665 7888888544444444332 24
Q ss_pred EEEEEcCCCCEEEEEeCCC
Q 001391 352 WRCLYDSLSSLLVTAGFDS 370 (1088)
Q Consensus 352 ~~l~~~~dg~~l~tg~~Dg 370 (1088)
....|+|+++.|+..+.++
T Consensus 368 ~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 368 ESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CCceECCCCCEEEEEEeCC
Confidence 4568999999888777654
No 262
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.62 E-value=2.6e-06 Score=95.56 Aligned_cols=143 Identities=14% Similarity=0.163 Sum_probs=112.0
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCceEEEec-cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCC
Q 001391 146 GNRSLAIGCSDNSIRVWDISNSSIILEVH-SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEG 224 (1088)
Q Consensus 146 d~~~lasgs~Dg~V~iWd~~~~~~~~~~~-~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~ 224 (1088)
|-..++-|...|.|.+|++..++....+. ......+..+.. ..+-.+|.+++.|+.+..|+..
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~---~~~~~ciyS~~ad~~v~~~~~~------------- 132 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILD---AQRLGCIYSVGADLKVVYILEK------------- 132 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeec---ccccCceEecCCceeEEEEecc-------------
Confidence 44577888899999999999999888776 222222333221 3455689999999999999998
Q ss_pred ccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceee
Q 001391 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (1088)
Q Consensus 225 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~ 304 (1088)
....++..++....+.+++.+||++.+++++. +|++||++++ +.+. .+
T Consensus 133 --------------------~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~--~ik~~~~~~k--------evv~--~f 180 (541)
T KOG4547|consen 133 --------------------EKVIIRIWKEQKPLVSSLCISPDGKILLTASR--QIKVLDIETK--------EVVI--TF 180 (541)
T ss_pred --------------------cceeeeeeccCCCccceEEEcCCCCEEEeccc--eEEEEEccCc--------eEEE--Ee
Confidence 67788888888999999999999999999875 8999999995 4454 89
Q ss_pred eccCcceEEEEEC-------CCEE-EEEeCCCcEEEEcCC
Q 001391 305 YGHNARVWDCCLT-------DSFI-ITAGEDCTCRVWGSD 336 (1088)
Q Consensus 305 ~~h~~~I~~v~~~-------~~~l-~sg~~Dg~i~vWd~~ 336 (1088)
.||.++|.++.|. +.++ .+...+.-+.+|-..
T Consensus 181 tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 181 TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred cCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 9999999999985 3444 445566678888773
No 263
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.58 E-value=4.3e-07 Score=97.10 Aligned_cols=162 Identities=18% Similarity=0.212 Sum_probs=108.2
Q ss_pred EEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce----EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEe
Q 001391 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI----ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV 210 (1088)
Q Consensus 135 I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~----~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~ 210 (1088)
...+..+| .+++||++..+....++++..... +.....+.+.. ++.+...+......-..+....+.+|..
T Consensus 65 ~~~~~~s~---~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~--ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 65 PALVLTSD---SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPT--AISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccccccCC---CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcc--eeeeeeccceEEEEeecCCceeeeeecc
Confidence 34455566 888999998888877777654332 22222232221 2222222222222222333444445544
Q ss_pred ccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcc
Q 001391 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (1088)
Q Consensus 211 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~ 290 (1088)
. . .....+-||-..+..|+++||+++++++..|..||+-.....
T Consensus 140 ~---------------------------------~-~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~-- 183 (390)
T KOG3914|consen 140 D---------------------------------S-GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT-- 183 (390)
T ss_pred c---------------------------------c-cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc--
Confidence 3 2 233345699999999999999999999999999999877652
Q ss_pred cCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEc
Q 001391 291 KDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIK 344 (1088)
Q Consensus 291 ~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~ 344 (1088)
-.+.. -..||...|..++.. +..|+++|.|+++++||+ +|+.+.++.
T Consensus 184 ------f~Ies-fclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 184 ------FVIES-FCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred ------cchhh-hccccHhheeeeeeccCceeeecCCCCcEEEEecccCCcccccc
Confidence 23332 567999999999998 567899999999999999 888886654
No 264
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.57 E-value=1.2e-05 Score=94.48 Aligned_cols=222 Identities=12% Similarity=0.061 Sum_probs=129.7
Q ss_pred CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC----CCEEEEEEeccCCCCCCCCCCccc
Q 001391 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG----EKRVKLFELNFELSPNSQYQPETC 119 (1088)
Q Consensus 44 ~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g----d~~v~iw~l~~~~~~~~~~~~~~~ 119 (1088)
..|.++|...+. ...+..+.. .+...+|+ ||| ..++... ...|.+|++....
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~-~~~~p~~S-------pdg----~~la~~~~~~~~~~i~v~d~~~g~----------- 225 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSRE-PILSPAWS-------PDG----QKLAYVSFESGKPEIYVQDLATGQ----------- 225 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCC-ceecccCC-------CCC----CEEEEEEcCCCCcEEEEEECCCCC-----------
Confidence 468899975443 344444333 58888899 888 3444322 2579999987532
Q ss_pred cccceeeeccCCCCcEEEEEEecccCCCCEEEE-EEcCC--cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEE
Q 001391 120 VNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI-GCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRI 196 (1088)
Q Consensus 120 ~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~las-gs~Dg--~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l 196 (1088)
.+. +..+...+.+++|+| |++.|+. .+.++ .|.+||+.++..... ..+.. ......+ ++++..|
T Consensus 226 --~~~---~~~~~~~~~~~~~sp---Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~l-~~~~~-~~~~~~~---s~dg~~l 292 (417)
T TIGR02800 226 --REK---VASFPGMNGAPAFSP---DGSKLAVSLSKDGNPDIYVMDLDGKQLTRL-TNGPG-IDTEPSW---SPDGKSI 292 (417)
T ss_pred --EEE---eecCCCCccceEECC---CCCEEEEEECCCCCccEEEEECCCCCEEEC-CCCCC-CCCCEEE---CCCCCEE
Confidence 222 223445667799999 9987654 44444 588899887754332 22211 1112233 5678777
Q ss_pred EEEec-CC--eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEE
Q 001391 197 ASGTI-YN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS 273 (1088)
Q Consensus 197 ~sg~~-dg--~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s 273 (1088)
+..+. .+ .|.++++. .+. ...+..+...+....|+|+|++++.
T Consensus 293 ~~~s~~~g~~~iy~~d~~---------------------------------~~~-~~~l~~~~~~~~~~~~spdg~~i~~ 338 (417)
T TIGR02800 293 AFTSDRGGSPQIYMMDAD---------------------------------GGE-VRRLTFRGGYNASPSWSPDGDLIAF 338 (417)
T ss_pred EEEECCCCCceEEEEECC---------------------------------CCC-EEEeecCCCCccCeEECCCCCEEEE
Confidence 65543 34 46666655 222 2334445566778899999999998
Q ss_pred EECCC---cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCC---cEEEEcCCCceeEEEcc
Q 001391 274 VSDDR---SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC---TCRVWGSDGKQLKMIKE 345 (1088)
Q Consensus 274 ~s~Dg---~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg---~i~vWd~~~~~~~~~~~ 345 (1088)
++.++ .|.+||+.++.. +.+ ... .......|+ +..|+..+.++ .+.+.+.+++....+..
T Consensus 339 ~~~~~~~~~i~~~d~~~~~~------~~l-----~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~ 406 (417)
T TIGR02800 339 VHREGGGFNIAVMDLDGGGE------RVL-----TDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARLPL 406 (417)
T ss_pred EEccCCceEEEEEeCCCCCe------EEc-----cCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeECCC
Confidence 88776 788888877432 111 111 112334566 56666665543 35555556666665554
Q ss_pred cCC
Q 001391 346 HIG 348 (1088)
Q Consensus 346 h~~ 348 (1088)
+.+
T Consensus 407 ~~g 409 (417)
T TIGR02800 407 GNG 409 (417)
T ss_pred CCC
Confidence 433
No 265
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.57 E-value=3.1e-06 Score=94.94 Aligned_cols=188 Identities=15% Similarity=0.189 Sum_probs=141.5
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCceEEEeccC------CceeEEEEee-------------ecCCCCCcEEEEEecCCeEE
Q 001391 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSP------ERCLLYSMKL-------------WGDNLEALRIASGTIYNEII 206 (1088)
Q Consensus 146 d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~------~~~~~~s~~~-------------~~~s~~~~~l~sg~~dg~I~ 206 (1088)
...++|....||.+|+|+...++....+... ..+..|.+.. ..-+.+...++-|+..|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 5678999999999999999988876665421 1222232211 00123456788899999999
Q ss_pred EEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe--CCCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 001391 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV--GHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (1088)
Q Consensus 207 vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd 284 (1088)
+++.. .++.-..+. +|.+.|.++.++.+-..|.|++.|..+..|+
T Consensus 84 ~ys~~---------------------------------~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~ 130 (541)
T KOG4547|consen 84 LYSVA---------------------------------GGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYIL 130 (541)
T ss_pred EEEec---------------------------------CCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEe
Confidence 99998 555555554 7999999999999999999999999999999
Q ss_pred cCCCcccCCCCceeeeceeeeccCcceEEEEECC--CEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCC--
Q 001391 285 VRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL-- 359 (1088)
Q Consensus 285 ~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~--~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~d-- 359 (1088)
....+ .+. ...+-+..+.++++++ ..+++|+ +.|++||+ +++.+.+|.+|.+ +|.++.|-.+
T Consensus 131 ~~~~~--------~~~--~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~ 197 (541)
T KOG4547|consen 131 EKEKV--------IIR--IWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLID 197 (541)
T ss_pred cccce--------eee--eeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCc-ceEEEEEEEecc
Confidence 98853 333 5666677788999985 4777665 68999999 7888999999999 8999999765
Q ss_pred ---CCE-EEEEeCCCCEEEEEcCC
Q 001391 360 ---SSL-LVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 360 ---g~~-l~tg~~Dg~I~iwd~~~ 379 (1088)
|.+ |.+...+.-+.+|-...
T Consensus 198 g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 198 GIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ccccceeeeccccccceeEEEEEc
Confidence 454 44555667788887743
No 266
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.57 E-value=1.1e-06 Score=90.14 Aligned_cols=236 Identities=15% Similarity=0.189 Sum_probs=141.5
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCe-----eEEEEeeeC-----------CcceEEEEeccccc
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT-----LIRPFQVFH-----------GIRLHGISCNFINC 78 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~-----~~~~~~~~~-----------~~~V~~i~~s~~~~ 78 (1088)
...-|++|.|. .. |.||++|. +|.|.+|.-.... -...|+.|+ ..+|..|.|.
T Consensus 25 ead~ItaVefd--~t----g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~---- 94 (460)
T COG5170 25 EADKITAVEFD--ET----GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWF---- 94 (460)
T ss_pred ccceeeEEEec--cc----cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeee----
Confidence 34569999999 66 89999999 7999999865432 122344443 1457778876
Q ss_pred ccCCCccceeeEEEEECCCEEEEEEeccCCCC--------C---CCC-----CC------c----ccc-ccceeeec-cC
Q 001391 79 TEGSVSTRVTFEVALFGEKRVKLFELNFELSP--------N---SQY-----QP------E----TCV-NLSLVQSL-PR 130 (1088)
Q Consensus 79 ~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~--------~---~~~-----~~------~----~~~-~~~~~~~l-~~ 130 (1088)
.+++ +...|++..|++|++|.+...... . .+. ++ . ..+ ..++-+.+ ..
T Consensus 95 ---~~t~-r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNa 170 (460)
T COG5170 95 ---DDTG-RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANA 170 (460)
T ss_pred ---cCCC-cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceecccc
Confidence 2221 236677778999999998744200 0 000 00 0 000 11112222 56
Q ss_pred CCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce---EEEeccCC----ceeEEEEeeecCCCCCcEEEEEecCC
Q 001391 131 LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI---ILEVHSPE----RCLLYSMKLWGDNLEALRIASGTIYN 203 (1088)
Q Consensus 131 h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~---~~~~~~~~----~~~~~s~~~~~~s~~~~~l~sg~~dg 203 (1088)
|.-.|.++.|+. |.+.++++ .|-.|.+|+++--.. +.-++.+. ..++.+..|++. ....+.-.+..|
T Consensus 171 H~yhiNSiS~Ns---D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~--~cn~fmYSsSkG 244 (460)
T COG5170 171 HPYHINSISFNS---DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPE--MCNVFMYSSSKG 244 (460)
T ss_pred ceeEeeeeeecC---chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHh--HcceEEEecCCC
Confidence 888899999988 88888776 478899999864332 22222222 234556666432 344566677889
Q ss_pred eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEE
Q 001391 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIW 283 (1088)
Q Consensus 204 ~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iW 283 (1088)
+|++-|++...+-.. .-.++.....+...--+.+-...|..+.|+++|+++++-+. -+|+||
T Consensus 245 ~Ikl~DlRq~alcdn-----------------~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiw 306 (460)
T COG5170 245 EIKLNDLRQSALCDN-----------------SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIW 306 (460)
T ss_pred cEEehhhhhhhhccC-----------------chhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEE
Confidence 999999982221110 00000000011111223344567889999999999988755 589999
Q ss_pred EcCCCc
Q 001391 284 EVRAEY 289 (1088)
Q Consensus 284 d~~~~~ 289 (1088)
|++..+
T Consensus 307 Dvnm~k 312 (460)
T COG5170 307 DVNMAK 312 (460)
T ss_pred eccccc
Confidence 998764
No 267
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.55 E-value=0.00034 Score=74.72 Aligned_cols=277 Identities=11% Similarity=0.130 Sum_probs=163.5
Q ss_pred eEEEEEC---CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc---CCcEEEE
Q 001391 89 FEVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS---DNSIRVW 162 (1088)
Q Consensus 89 ~~la~~g---d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~---Dg~V~iW 162 (1088)
.++.+.. ++-|.+|++.+.. + .... ..+..+.+.++-++|+| ++++|.++-. +|.|--|
T Consensus 5 ~YiGtyT~~~s~gI~v~~ld~~~--g---------~l~~-~~~v~~~~nptyl~~~~---~~~~LY~v~~~~~~ggvaay 69 (346)
T COG2706 5 VYIGTYTKRESQGIYVFNLDTKT--G---------ELSL-LQLVAELGNPTYLAVNP---DQRHLYVVNEPGEEGGVAAY 69 (346)
T ss_pred EEEeeecccCCCceEEEEEeCcc--c---------ccch-hhhccccCCCceEEECC---CCCEEEEEEecCCcCcEEEE
Confidence 3444544 6789999998543 1 0111 12234667789999999 9999988754 5777777
Q ss_pred EcCC--CceEEE--eccCCceeEEEEeeecCCCCCcEEEEEe-cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCcee
Q 001391 163 DISN--SSIILE--VHSPERCLLYSMKLWGDNLEALRIASGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCF 237 (1088)
Q Consensus 163 d~~~--~~~~~~--~~~~~~~~~~s~~~~~~s~~~~~l~sg~-~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 237 (1088)
.++. |+.... ...+..... .+++ ++++.+|+++. ..|.|.++.++....
T Consensus 70 ~iD~~~G~Lt~ln~~~~~g~~p~-yvsv---d~~g~~vf~AnY~~g~v~v~p~~~dG~---------------------- 123 (346)
T COG2706 70 RIDPDDGRLTFLNRQTLPGSPPC-YVSV---DEDGRFVFVANYHSGSVSVYPLQADGS---------------------- 123 (346)
T ss_pred EEcCCCCeEEEeeccccCCCCCe-EEEE---CCCCCEEEEEEccCceEEEEEcccCCc----------------------
Confidence 7764 544322 111111112 2222 67888877765 458899999872110
Q ss_pred EecccccceeeeEEEeCCCCC----------EEEEEEcCCCCEEEEEE--CCCcEEEEEcCCCcccCCCCceeeeceeee
Q 001391 238 KLQDQQHTAVNLFRLVGHEGS----------IFRIEWSSCGSKLVSVS--DDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (1088)
Q Consensus 238 ~~~~~~~~~~~~~~~~gh~~~----------V~~v~~sp~g~~l~s~s--~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~ 305 (1088)
......+..|.+. +....+.|++++|+++. .| .|.+|++..++. ....+ ...
T Consensus 124 --------l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L------~~~~~-~~v 187 (346)
T COG2706 124 --------LQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKL------TPADP-AEV 187 (346)
T ss_pred --------cccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCcc------ccccc-ccc
Confidence 0111111223333 78899999999998874 35 699999997654 22221 222
Q ss_pred ccCcceEEEEEC--CCEEEE-EeCCCcEEEEcCCC--ceeEEEccc-------CC-CCeEEEEEcCCCCEEEEEeC-CCC
Q 001391 306 GHNARVWDCCLT--DSFIIT-AGEDCTCRVWGSDG--KQLKMIKEH-------IG-RGIWRCLYDSLSSLLVTAGF-DSA 371 (1088)
Q Consensus 306 ~h~~~I~~v~~~--~~~l~s-g~~Dg~i~vWd~~~--~~~~~~~~h-------~~-~~V~~l~~~~dg~~l~tg~~-Dg~ 371 (1088)
........+.|+ +.+.+. .--+++|-+|..++ ..+..++.+ .+ ...-.|.+++||++|.++.+ ...
T Consensus 188 ~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~ds 267 (346)
T COG2706 188 KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDS 267 (346)
T ss_pred CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCe
Confidence 445567889998 344444 44689999999943 333333221 11 24667889999999988764 346
Q ss_pred EEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCC--eEEEEEe
Q 001391 372 IKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHG--YLYHTKL 447 (1088)
Q Consensus 372 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g--~i~~~~~ 447 (1088)
|.++.+... .. .+.+ ...+..+....|.+.+++.+++|++.++. .+..+.+
T Consensus 268 I~~f~V~~~----------------~g-~L~~--------~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 268 IAVFSVDPD----------------GG-KLEL--------VGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFER 320 (346)
T ss_pred EEEEEEcCC----------------CC-EEEE--------EEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEE
Confidence 777766321 00 0110 11112223347899999999877776443 2544443
No 268
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.54 E-value=0.00023 Score=77.70 Aligned_cols=224 Identities=12% Similarity=0.066 Sum_probs=139.3
Q ss_pred CCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEE-EecccCCCCEEEEEEcCCcEE
Q 001391 82 SVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVC-FLKVCNGNRSLAIGCSDNSIR 160 (1088)
Q Consensus 82 ~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~-f~p~~~d~~~lasgs~Dg~V~ 160 (1088)
.|| ..++....|.|.++|.+++....-... .....-......-....-+. |++ .+|.+++..+ -|...
T Consensus 276 sDG----krIvFq~~GdIylydP~td~lekldI~----lpl~rk~k~~k~~~pskyledfa~--~~Gd~ia~VS-RGkaF 344 (668)
T COG4946 276 SDG----KRIVFQNAGDIYLYDPETDSLEKLDIG----LPLDRKKKQPKFVNPSKYLEDFAV--VNGDYIALVS-RGKAF 344 (668)
T ss_pred CCC----cEEEEecCCcEEEeCCCcCcceeeecC----CccccccccccccCHHHhhhhhcc--CCCcEEEEEe-cCcEE
Confidence 677 688888889999999886542111000 00000000111111111122 344 2678888876 46677
Q ss_pred EEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCC-eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEe
Q 001391 161 VWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN-EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1088)
Q Consensus 161 iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg-~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 239 (1088)
|.+...+-.++. ..+.+ +-|. ....+..-++.|+.|| .+-|+|..
T Consensus 345 i~~~~~~~~iqv-~~~~~-VrY~----r~~~~~e~~vigt~dgD~l~iyd~~---------------------------- 390 (668)
T COG4946 345 IMRPWDGYSIQV-GKKGG-VRYR----RIQVDPEGDVIGTNDGDKLGIYDKD---------------------------- 390 (668)
T ss_pred EECCCCCeeEEc-CCCCc-eEEE----EEccCCcceEEeccCCceEEEEecC----------------------------
Confidence 766655543332 11111 2222 1234556788899999 89999987
Q ss_pred cccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--
Q 001391 240 QDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-- 317 (1088)
Q Consensus 240 ~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-- 317 (1088)
+..+.++.+.-+.|.++..+|+|++++.+.+...+.+.|+.++.. +.+ -....+-|+...|+
T Consensus 391 ------~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv------~~i----dkS~~~lItdf~~~~n 454 (668)
T COG4946 391 ------GGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV------RLI----DKSEYGLITDFDWHPN 454 (668)
T ss_pred ------CceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe------eEe----cccccceeEEEEEcCC
Confidence 334566777789999999999999999999989999999999754 222 23344568888888
Q ss_pred CCEEEEEeCCC----cEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEe
Q 001391 318 DSFIITAGEDC----TCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367 (1088)
Q Consensus 318 ~~~l~sg~~Dg----~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~ 367 (1088)
...++-+--+| .|+++|+.+..+.......+ .=.+-+|.||+++|.--+
T Consensus 455 sr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta-~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 455 SRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTA-YDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ceeEEEecCcceeeeeEEEEecCCCeEEEecCCcc-cccCcccCCCCcEEEEEe
Confidence 35666555444 68999996654444433333 235778999999876554
No 269
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.52 E-value=5.2e-07 Score=111.56 Aligned_cols=189 Identities=13% Similarity=0.167 Sum_probs=135.2
Q ss_pred CCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEe
Q 001391 131 LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV 210 (1088)
Q Consensus 131 h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~ 210 (1088)
+-..|.++.=+| ...+-+||+.||.|++|....++.+........+.+..+.| +.+|+.+..+..||.+.+|..
T Consensus 2207 ~v~~v~r~~sHp---~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f---~~qGnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2207 PVENVRRMTSHP---SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRF---NHQGNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred ccCceeeecCCC---CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhh---cccCCceeeeccCCceeeccc
Confidence 346677888788 77788899999999999999888877766443344444444 567889999999999999998
Q ss_pred ccCccccC-------CC---CCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcE
Q 001391 211 DWEHVAPL-------LN---SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280 (1088)
Q Consensus 211 ~~~~~~~~-------~~---~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v 280 (1088)
.-....+. .+ -.......|...+++++.+|+.-.....-..-..|.+.++++++.|..+.++||+.+|.|
T Consensus 2281 ~pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v 2360 (2439)
T KOG1064|consen 2281 SPKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEV 2360 (2439)
T ss_pred CCcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcE
Confidence 72111100 00 112233445556889999998654443333338999999999999999999999999999
Q ss_pred EEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEE
Q 001391 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMI 343 (1088)
Q Consensus 281 ~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~ 343 (1088)
++||++..+. + |.-.. +. ...++++|+..|.++||++ .-..+.++
T Consensus 2361 ~l~D~rqrql--------~-------h~~~~--~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2361 CLFDIRQRQL--------R-------HTFQA--LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred EEeehHHHHH--------H-------HHhhh--hh-hhheeeccCcccceEEEEccccchhhcC
Confidence 9999988533 1 11111 11 3578999999999999999 44455554
No 270
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=3.2e-05 Score=85.75 Aligned_cols=282 Identities=15% Similarity=0.199 Sum_probs=169.4
Q ss_pred eeEEEEEeccCCCCCCCCEEEEEe------------CCeEEEEECCCCeeEEEEeeeCCcc-eE-EEEecccccccCCCc
Q 001391 19 EISALCFVHLPSHLSSLPFLLAGS------------GSQVLLYDLEAGTLIRPFQVFHGIR-LH-GISCNFINCTEGSVS 84 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~laag~------------d~~I~vwd~~tg~~~~~~~~~~~~~-V~-~i~~s~~~~~~~~d~ 84 (1088)
.|.-+.|| |. -+||++=+ +..|+|||+.||.+.+.|..+.+.. ++ -..|| .|+
T Consensus 251 ~Vq~idfS--P~----EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS-------~Dd 317 (698)
T KOG2314|consen 251 GVQFIDFS--PN----EKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWS-------HDD 317 (698)
T ss_pred CceeeecC--Cc----cceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEec-------cCC
Confidence 37789999 99 89999822 2589999999999999998854322 22 34566 675
Q ss_pred cceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc-----CCcE
Q 001391 85 TRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-----DNSI 159 (1088)
Q Consensus 85 ~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~-----Dg~V 159 (1088)
.++|.-..++|.||+... +.++-.-.---..|....|+| .+++||-=.. -..+
T Consensus 318 ----Ky~Arm~~~sisIyEtps---------------f~lld~Kslki~gIr~FswsP---~~~llAYwtpe~~~~parv 375 (698)
T KOG2314|consen 318 ----KYFARMTGNSISIYETPS---------------FMLLDKKSLKISGIRDFSWSP---TSNLLAYWTPETNNIPARV 375 (698)
T ss_pred ----ceeEEeccceEEEEecCc---------------eeeecccccCCccccCcccCC---CcceEEEEcccccCCcceE
Confidence 788888889999998663 111111111225688888999 7776654221 2235
Q ss_pred EEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEE----------ecCCeEEEEEeccCccccCCCCCCCccCCC
Q 001391 160 RVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASG----------TIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (1088)
Q Consensus 160 ~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg----------~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~ 229 (1088)
.+-.+.+++.+.+..... +..+.+++. .+|.+|+.- +....+-|+.++
T Consensus 376 tL~evPs~~~iRt~nlfn---VsDckLhWQ-k~gdyLcvkvdR~tK~~~~g~f~n~eIfrir------------------ 433 (698)
T KOG2314|consen 376 TLMEVPSKREIRTKNLFN---VSDCKLHWQ-KSGDYLCVKVDRHTKSKVKGQFSNLEIFRIR------------------ 433 (698)
T ss_pred EEEecCccceeeecccee---eeccEEEec-cCCcEEEEEEEeeccccccceEeeEEEEEee------------------
Confidence 555555555544432111 112333333 345555432 112223333333
Q ss_pred CCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC---CCcEEEEEcCCCcccCCCCceeeeceeeec
Q 001391 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD---DRSARIWEVRAEYWKDSDSIEEVGSSVLYG 306 (1088)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~---Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~ 306 (1088)
...-++... .-...|...+|-|.|..+++-+. ..++.+|.+.+... ....+. .+.
T Consensus 434 --------------eKdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~----~~~lVk--~~d- 491 (698)
T KOG2314|consen 434 --------------EKDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK----KPSLVK--ELD- 491 (698)
T ss_pred --------------ccCCCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC----chhhhh--hhc-
Confidence 122222222 24577899999999988766443 35788888874211 022222 111
Q ss_pred cCcceEEEEEC--CCEEEEE---eCCCcEEEEcCCC-cee-EEEcccCCCCeEEEEEcCCCCEEEEEeC------CCCEE
Q 001391 307 HNARVWDCCLT--DSFIITA---GEDCTCRVWGSDG-KQL-KMIKEHIGRGIWRCLYDSLSSLLVTAGF------DSAIK 373 (1088)
Q Consensus 307 h~~~I~~v~~~--~~~l~sg---~~Dg~i~vWd~~~-~~~-~~~~~h~~~~V~~l~~~~dg~~l~tg~~------Dg~I~ 373 (1088)
......+.|+ |.+++.+ |..|.+..+|.+. ... .....|.. .+.+.|.|.|+|++|++. |...+
T Consensus 492 -k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~--at~veWDPtGRYvvT~ss~wrhk~d~GYr 568 (698)
T KOG2314|consen 492 -KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFA--ATEVEWDPTGRYVVTSSSSWRHKVDNGYR 568 (698)
T ss_pred -ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccc--cccceECCCCCEEEEeeehhhhccccceE
Confidence 1345677787 5666554 4678999999853 222 12234543 678999999999999874 66788
Q ss_pred EEEcCCCCC
Q 001391 374 VHQFQAFLP 382 (1088)
Q Consensus 374 iwd~~~~~~ 382 (1088)
+|++++..+
T Consensus 569 i~tfqGrll 577 (698)
T KOG2314|consen 569 IFTFQGRLL 577 (698)
T ss_pred EEEeecHHH
Confidence 999877544
No 271
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.50 E-value=5.2e-05 Score=83.58 Aligned_cols=272 Identities=13% Similarity=0.115 Sum_probs=168.6
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECC
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd 96 (1088)
.-++..+++| |. |++|++..-..|.+|+-..+..+..+.. . .|.-+.|| |.+ .+|+++.+
T Consensus 32 ~~p~~~~~~S--P~----G~~l~~~~~~~V~~~~g~~~~~l~~~~~--~-~V~~~~fS-------P~~----kYL~tw~~ 91 (561)
T COG5354 32 NWPVAYVSES--PL----GTYLFSEHAAGVECWGGPSKAKLVRFRH--P-DVKYLDFS-------PNE----KYLVTWSR 91 (561)
T ss_pred Ccchhheeec--Cc----chheehhhccceEEccccchhheeeeec--C-CceecccC-------ccc----ceeeeecc
Confidence 3468899999 98 9999998888899999888776666663 2 48999999 666 67777763
Q ss_pred C----------------EEEEEEeccCCCCCCCCCCccccccceeeeccCCCCc--EE-EEEEecccCCCCEEEEEEcCC
Q 001391 97 K----------------RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW--VF-DVCFLKVCNGNRSLAIGCSDN 157 (1088)
Q Consensus 97 ~----------------~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~--I~-~v~f~p~~~d~~~lasgs~Dg 157 (1088)
. .+.+||+.. ...+..+.+-... .+ -+.|+- +..++|=- ...
T Consensus 92 ~pi~~pe~e~sp~~~~n~~~vwd~~s---------------g~iv~sf~~~~q~~~~Wp~~k~s~---~D~y~ARv-v~~ 152 (561)
T COG5354 92 EPIIEPEIEISPFTSKNNVFVWDIAS---------------GMIVFSFNGISQPYLGWPVLKFSI---DDKYVARV-VGS 152 (561)
T ss_pred CCccChhhccCCccccCceeEEeccC---------------ceeEeeccccCCcccccceeeeee---cchhhhhh-ccC
Confidence 2 467888775 3455666555544 55 677877 66655433 245
Q ss_pred cEEEEEcCCCceE----EEeccCCceeEEEEeeecCCCCCcEEEE-----EecCCeEEEEEeccCccccCCCCCCCccCC
Q 001391 158 SIRVWDISNSSII----LEVHSPERCLLYSMKLWGDNLEALRIAS-----GTIYNEIIVWKVDWEHVAPLLNSPEGNHAH 228 (1088)
Q Consensus 158 ~V~iWd~~~~~~~----~~~~~~~~~~~~s~~~~~~s~~~~~l~s-----g~~dg~I~vwd~~~~~~~~~~~~~~~~s~~ 228 (1088)
.+.|+++ ++... ..+. +.+-.-++ +.+. .++..||. ++..+++++|.+.
T Consensus 153 sl~i~e~-t~n~~~~p~~~lr-~~gi~dFs--isP~-~n~~~la~~tPEk~~kpa~~~i~sIp----------------- 210 (561)
T COG5354 153 SLYIHEI-TDNIEEHPFKNLR-PVGILDFS--ISPE-GNHDELAYWTPEKLNKPAMVRILSIP----------------- 210 (561)
T ss_pred eEEEEec-CCccccCchhhcc-ccceeeEE--ecCC-CCCceEEEEccccCCCCcEEEEEEcc-----------------
Confidence 6999996 33221 1111 11111122 1111 12222332 3455666666665
Q ss_pred CCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEE-----------CCCcEEEEEcCCCcccCCCCce
Q 001391 229 GSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS-----------DDRSARIWEVRAEYWKDSDSIE 297 (1088)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s-----------~Dg~v~iWd~~~~~~~~~~~~~ 297 (1088)
.+..+..-.--+-.=..+.|.+.|++++.-- ....+.|+++.....
T Consensus 211 ----------------~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i------- 267 (561)
T COG5354 211 ----------------KNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI------- 267 (561)
T ss_pred ----------------CCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-------
Confidence 2222222111122235677888888765321 124567777765322
Q ss_pred eeeceeeeccCcceEEEEEC--CC--EEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCC---C
Q 001391 298 EVGSSVLYGHNARVWDCCLT--DS--FIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD---S 370 (1088)
Q Consensus 298 ~i~~~~~~~h~~~I~~v~~~--~~--~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~D---g 370 (1088)
. ...+-.++|...+|. .+ -+++|-.+.++.++|+.++....+.... =..+.|+|.+++++.+|.| |
T Consensus 268 --~--V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~---rNT~~fsp~~r~il~agF~nl~g 340 (561)
T COG5354 268 --P--VEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQK---RNTIFFSPHERYILFAGFDNLQG 340 (561)
T ss_pred --c--eeccccccceeeeecccCCceeEEecccccceeecccccceEEecCCcc---cccccccCcccEEEEecCCcccc
Confidence 1 222567889999996 22 3566678999999999888555544332 3467899999999998876 6
Q ss_pred CEEEEEcCC
Q 001391 371 AIKVHQFQA 379 (1088)
Q Consensus 371 ~I~iwd~~~ 379 (1088)
.|-+|+..+
T Consensus 341 ni~i~~~~~ 349 (561)
T COG5354 341 NIEIFDPAG 349 (561)
T ss_pred ceEEeccCC
Confidence 788888754
No 272
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.49 E-value=0.0039 Score=68.42 Aligned_cols=231 Identities=12% Similarity=0.035 Sum_probs=134.2
Q ss_pred EEeCCCcEEEEc--CCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcce
Q 001391 323 TAGEDCTCRVWG--SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEI 400 (1088)
Q Consensus 323 sg~~Dg~i~vWd--~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1088)
....||.=.+|. ++|+-++.....+. -.+-..+.||+.++- +.-|.|.++|..+..+..++-.
T Consensus 241 lsD~eG~GnlYSvdldGkDlrrHTnFtd--YY~R~~nsDGkrIvF-q~~GdIylydP~td~lekldI~------------ 305 (668)
T COG4946 241 LSDHEGVGNLYSVDLDGKDLRRHTNFTD--YYPRNANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIG------------ 305 (668)
T ss_pred EecccCccceEEeccCCchhhhcCCchh--ccccccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecC------------
Confidence 344555444444 46766554433332 233345678887665 4567899999976544433211
Q ss_pred EEeeeCCCc-cceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCC
Q 001391 401 FSIKIPNFS-EQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKY 479 (1088)
Q Consensus 401 ~~~~~~~~~-~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~ 479 (1088)
.|-.. ......-.........+.. +|.+++..+.|+.+..+.|.... .+..+...+.-..+.
T Consensus 306 ----lpl~rk~k~~k~~~pskyledfa~~-~Gd~ia~VSRGkaFi~~~~~~~~------iqv~~~~~VrY~r~~------ 368 (668)
T COG4946 306 ----LPLDRKKKQPKFVNPSKYLEDFAVV-NGDYIALVSRGKAFIMRPWDGYS------IQVGKKGGVRYRRIQ------ 368 (668)
T ss_pred ----CccccccccccccCHHHhhhhhccC-CCcEEEEEecCcEEEECCCCCee------EEcCCCCceEEEEEc------
Confidence 11110 0000000000111112222 56788888888888766666533 222222223333332
Q ss_pred cCCCCCeEEEecCCC-CEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCc
Q 001391 480 PCGIDDWVALGDGKG-NMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSS 558 (1088)
Q Consensus 480 s~~~~~~la~g~~dg-~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~ 558 (1088)
.+.+-++.|..|| .+-+|+..++.... ....-+++.. ...+++|++++.+.....+.+.|++++..
T Consensus 369 --~~~e~~vigt~dgD~l~iyd~~~~e~kr--------~e~~lg~I~a--v~vs~dGK~~vvaNdr~el~vididngnv- 435 (668)
T COG4946 369 --VDPEGDVIGTNDGDKLGIYDKDGGEVKR--------IEKDLGNIEA--VKVSPDGKKVVVANDRFELWVIDIDNGNV- 435 (668)
T ss_pred --cCCcceEEeccCCceEEEEecCCceEEE--------eeCCccceEE--EEEcCCCcEEEEEcCceEEEEEEecCCCe-
Confidence 2335788999999 89999998765321 1112222332 45789999999999999999999986631
Q ss_pred ccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCC----cEEEEeCCcc
Q 001391 559 VCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRG----NLVLFPLLRD 612 (1088)
Q Consensus 559 ~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg----~I~Iw~~~~~ 612 (1088)
.+. .....+-|+.++|+|++++||-|--+| .|++||+..+
T Consensus 436 -----------~~i---dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 436 -----------RLI---DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred -----------eEe---cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 111 123356699999999999999988877 5889998764
No 273
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.48 E-value=3e-07 Score=104.22 Aligned_cols=227 Identities=15% Similarity=0.192 Sum_probs=150.7
Q ss_pred ceEEecCCCc----------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC-eeEEEEeeeCCcceEEEEe
Q 001391 6 LSEWRLDVGQ----------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG-TLIRPFQVFHGIRLHGISC 73 (1088)
Q Consensus 6 i~iWdl~~g~----------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg-~~~~~~~~~~~~~V~~i~~ 73 (1088)
..+|++.... |...|+.+.|. |. ....|++++ |..+..||+.+. ..+..+..-+. +...++|
T Consensus 93 aiiwnlA~ss~~aIef~lhghsraitd~n~~--~q---~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s-~asqVkw 166 (1081)
T KOG0309|consen 93 AIIWNLAKSSSNAIEFVLHGHSRAITDINFN--PQ---HPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS-AASQVKW 166 (1081)
T ss_pred hhhhhhhcCCccceEEEEecCccceeccccC--CC---CCcceeeccccccceeeeccCCCcceeeeecccc-cCceeee
Confidence 4567766543 56678899998 64 235677777 899999999876 34555544333 5678888
Q ss_pred cccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEE
Q 001391 74 NFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG 153 (1088)
Q Consensus 74 s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg 153 (1088)
+- .++ ..+|.+-.+.|++||+..+. ..+..+++|...|+.++|+.. .-..+.+.
T Consensus 167 ny------k~p----~vlasshg~~i~vwd~r~gs--------------~pl~s~K~~vs~vn~~~fnr~--~~s~~~s~ 220 (1081)
T KOG0309|consen 167 NY------KDP----NVLASSHGNDIFVWDLRKGS--------------TPLCSLKGHVSSVNSIDFNRF--KYSEIMSS 220 (1081)
T ss_pred cc------cCc----chhhhccCCceEEEeccCCC--------------cceEEecccceeeehHHHhhh--hhhhhccc
Confidence 73 454 68888889999999998654 677888899999999999762 33468899
Q ss_pred EcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCC
Q 001391 154 CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (1088)
Q Consensus 154 s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~ 233 (1088)
+.|++|+.||.+....-..........++-.++.++. +|.++.---.++.+.+.+.+..
T Consensus 221 ~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg-~g~~~mp~~G~n~v~~~~c~n~-------------------- 279 (1081)
T KOG0309|consen 221 SNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFG-EGYCIMPMVGGNMVPQLRCENS-------------------- 279 (1081)
T ss_pred CCCCceeeecccccccccceeccccCcceeccccccC-ceeEeccccCCeeeeeccccch--------------------
Confidence 9999999999875433322222333344544444432 2322221111224445544410
Q ss_pred CceeEecccccceeeeEEEeCCCCCEEEEEEcCCCC----------EEEEEECCCcEEEEEcCCC
Q 001391 234 FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS----------KLVSVSDDRSARIWEVRAE 288 (1088)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~----------~l~s~s~Dg~v~iWd~~~~ 288 (1088)
...|......+++++|.||.+.|....|-..+. .|+|=|.|.++|+|-+.+.
T Consensus 280 ---d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 280 ---DLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred ---hhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 011222225678999999999998877643221 5899999999999998763
No 274
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.47 E-value=0.00053 Score=73.30 Aligned_cols=264 Identities=16% Similarity=0.141 Sum_probs=159.4
Q ss_pred CCCCceEEecCCCc----------eeeeeEEEEEeccCCCCCCCCEEEEEe----CCeEEEEECCC--CeeE--EEEeee
Q 001391 2 GKKDLSEWRLDVGQ----------YLGEISALCFVHLPSHLSSLPFLLAGS----GSQVLLYDLEA--GTLI--RPFQVF 63 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~----------~~~~V~~v~fs~~pd~~~~~~~laag~----d~~I~vwd~~t--g~~~--~~~~~~ 63 (1088)
+++-|++|++.+.. ..+..+-|+|+ |+ ++.|.++. .+.|--|.+.. |++. .....
T Consensus 14 ~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~--~~----~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~- 86 (346)
T COG2706 14 ESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVN--PD----QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL- 86 (346)
T ss_pred CCCceEEEEEeCcccccchhhhccccCCCceEEEC--CC----CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc-
Confidence 35669999988543 45678899999 98 77888765 27777777764 6542 22222
Q ss_pred CCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCc--------
Q 001391 64 HGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW-------- 134 (1088)
Q Consensus 64 ~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~-------- 134 (1088)
.+..-.-++++ ++++ .++++ ...+.|.++.+..... .........|.+.
T Consensus 87 ~g~~p~yvsvd-------~~g~---~vf~AnY~~g~v~v~p~~~dG~------------l~~~v~~~~h~g~~p~~rQ~~ 144 (346)
T COG2706 87 PGSPPCYVSVD-------EDGR---FVFVANYHSGSVSVYPLQADGS------------LQPVVQVVKHTGSGPHERQES 144 (346)
T ss_pred CCCCCeEEEEC-------CCCC---EEEEEEccCceEEEEEcccCCc------------cccceeeeecCCCCCCccccC
Confidence 23334667777 7762 33333 4589999999975431 1111112223333
Q ss_pred --EEEEEEecccCCCCEEEEEEc-CCcEEEEEcCCCceEEEe--ccCCceeEEEEeeecCCCCCcEEEEEe-cCCeEEEE
Q 001391 135 --VFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNSSIILEV--HSPERCLLYSMKLWGDNLEALRIASGT-IYNEIIVW 208 (1088)
Q Consensus 135 --I~~v~f~p~~~d~~~lasgs~-Dg~V~iWd~~~~~~~~~~--~~~~~~~~~s~~~~~~s~~~~~l~sg~-~dg~I~vw 208 (1088)
+....|.| ++++|++..- --.|.+|++..++....- .-..++--..+.| .|++.+.+.-+ -+++|.+|
T Consensus 145 ~h~H~a~~tP---~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~F---Hpn~k~aY~v~EL~stV~v~ 218 (346)
T COG2706 145 PHVHSANFTP---DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVF---HPNGKYAYLVNELNSTVDVL 218 (346)
T ss_pred CccceeeeCC---CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEE---cCCCcEEEEEeccCCEEEEE
Confidence 88899999 9998888632 235999999977653221 1122333334555 36777766544 58999999
Q ss_pred EeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe------CCCCCEEEEEEcCCCCEEEEEEC-CCcEE
Q 001391 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV------GHEGSIFRIEWSSCGSKLVSVSD-DRSAR 281 (1088)
Q Consensus 209 d~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~------gh~~~V~~v~~sp~g~~l~s~s~-Dg~v~ 281 (1088)
...... + ..+.++.+. ....+..+|..+|||++|..+-+ ...|.
T Consensus 219 ~y~~~~--g---------------------------~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~ 269 (346)
T COG2706 219 EYNPAV--G---------------------------KFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIA 269 (346)
T ss_pred EEcCCC--c---------------------------eEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence 988210 0 111222211 13456778999999999987754 34788
Q ss_pred EEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC-CcEEEEcC
Q 001391 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED-CTCRVWGS 335 (1088)
Q Consensus 282 iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D-g~i~vWd~ 335 (1088)
++.+..... ....+. ....+........+. +.+|+.+.++ ..|.+|..
T Consensus 270 ~f~V~~~~g----~L~~~~--~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 270 VFSVDPDGG----KLELVG--ITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFER 320 (346)
T ss_pred EEEEcCCCC----EEEEEE--EeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEE
Confidence 887765421 012222 222233334555565 6777777765 57888887
No 275
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.43 E-value=4.2e-05 Score=77.60 Aligned_cols=265 Identities=9% Similarity=-0.024 Sum_probs=157.3
Q ss_pred CceEEecCCCc--eeeeeEEEEEeccCCCC-CCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEeccccccc
Q 001391 5 DLSEWRLDVGQ--YLGEISALCFVHLPSHL-SSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTE 80 (1088)
Q Consensus 5 ~i~iWdl~~g~--~~~~V~~v~fs~~pd~~-~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~ 80 (1088)
.+.+|++-+.. -..--+.|.|- |..+ ....+||+|+ -|...+|.+.+.+.+..+-..+ +.++.+....| .
T Consensus 53 sv~i~~~y~N~~~iv~~y~g~~F~--p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~s---nn~v~~~~r~c-d 126 (344)
T KOG4532|consen 53 SVPINSHYSNPKGIVEFYTGMTFT--PGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVS---NNDVTLVKRYC-D 126 (344)
T ss_pred eeEeccccCCchhhEEeeeccccc--chHhhccccEEEeccccceeeeecccCcccceeeeccc---ccchhhhhhhc-c
Confidence 46677776655 11112567777 6411 2246788876 5999999999866544333212 23333321111 1
Q ss_pred CCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEE
Q 001391 81 GSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIR 160 (1088)
Q Consensus 81 ~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~ 160 (1088)
..- .++.++-|.++++.+++.+. .+...+... -.+.++++++ |++++++.+....|-
T Consensus 127 ~~~-----~~~i~sndht~k~~~~~~~s-------------~~~~~h~~~--~~~ns~~~sn---d~~~~~~Vgds~~Vf 183 (344)
T KOG4532|consen 127 LKF-----PLNIASNDHTGKTMVVSGDS-------------NKFAVHNQN--LTQNSLHYSN---DPSWGSSVGDSRRVF 183 (344)
T ss_pred ccc-----ceeeccCCcceeEEEEecCc-------------ccceeeccc--cceeeeEEcC---CCceEEEecCCCcce
Confidence 121 67778889999999998543 122222111 2288999999 999999999999999
Q ss_pred EEEcCCC-ceEEE-eccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeE
Q 001391 161 VWDISNS-SIILE-VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (1088)
Q Consensus 161 iWd~~~~-~~~~~-~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 238 (1088)
.|.+... +.+.. ...+....-++..+ +.....+|+++.||++.|||++.....
T Consensus 184 ~y~id~~sey~~~~~~a~t~D~gF~~S~---s~~~~~FAv~~Qdg~~~I~DVR~~~tp---------------------- 238 (344)
T KOG4532|consen 184 RYAIDDESEYIENIYEAPTSDHGFYNSF---SENDLQFAVVFQDGTCAIYDVRNMATP---------------------- 238 (344)
T ss_pred EEEeCCccceeeeeEecccCCCceeeee---ccCcceEEEEecCCcEEEEEecccccc----------------------
Confidence 9998653 33322 23333323344443 567789999999999999999821110
Q ss_pred ecccccceeeeEEEeCCCCCEEEEEEcCCCC--EEEEEECCCcEEEEEcCCCcccCCCCceeeec--eeeeccCc-ceEE
Q 001391 239 LQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS--KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNA-RVWD 313 (1088)
Q Consensus 239 ~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~--~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~--~~~~~h~~-~I~~ 313 (1088)
.......-..|.+.+..+.|++.|. +|...-.-+.+.+-|+++... .+.+.+ -....|.. .|..
T Consensus 239 ------m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~-----~q~I~i~~d~~~~~~tq~ifg 307 (344)
T KOG4532|consen 239 ------MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN-----HQVIVIPDDVERKHNTQHIFG 307 (344)
T ss_pred ------hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce-----eeEEecCcccccccccccccc
Confidence 0111112235999999999998764 444444556899999998754 233321 12223333 3777
Q ss_pred EEEC--CCEEEEEeCCCcEEEEcC
Q 001391 314 CCLT--DSFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 314 v~~~--~~~l~sg~~Dg~i~vWd~ 335 (1088)
..|. +..+.+..++ .+.-|++
T Consensus 308 t~f~~~n~s~~v~~e~-~~ae~ni 330 (344)
T KOG4532|consen 308 TNFNNENESNDVKNEL-QGAEYNI 330 (344)
T ss_pred ccccCCCcccccccch-hhheeec
Confidence 7776 3444444443 2333444
No 276
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.42 E-value=3.1e-06 Score=85.24 Aligned_cols=75 Identities=19% Similarity=0.369 Sum_probs=61.4
Q ss_pred CEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEE
Q 001391 258 SIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVW 333 (1088)
Q Consensus 258 ~V~~v~~sp~g~-~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vW 333 (1088)
.|.+++-+|..+ .+++|++||.+-+||.+... .+.. .+..|.+.||-+.|+ |..|+++++||.+..|
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-------~p~S--~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~w 251 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-------MPVS--LLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHW 251 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEccccc-------chHH--HHHHhhhhhhheeccCCCchheeEecCCCcEEEE
Confidence 388899888654 56778899999999998852 2232 678899999999998 6899999999999999
Q ss_pred cCCCceeE
Q 001391 334 GSDGKQLK 341 (1088)
Q Consensus 334 d~~~~~~~ 341 (1088)
|.+++.+.
T Consensus 252 das~~~l~ 259 (319)
T KOG4714|consen 252 DASTTFLS 259 (319)
T ss_pred cCCCceEE
Confidence 99765544
No 277
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.42 E-value=5.9e-05 Score=88.00 Aligned_cols=242 Identities=11% Similarity=0.030 Sum_probs=132.2
Q ss_pred eEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCC--EEEEEEeccCCCCCCCCCCcccccc
Q 001391 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK--RVKLFELNFELSPNSQYQPETCVNL 122 (1088)
Q Consensus 45 ~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~--~v~iw~l~~~~~~~~~~~~~~~~~~ 122 (1088)
.|.+.|...+.. ..+..... .+..-+|| |||+......++..++ .|.+.++..+. .
T Consensus 166 ~l~~~d~dG~~~-~~lt~~~~-~~~sP~wS-------PDG~~~~~~y~S~~~g~~~I~~~~l~~g~-------------~ 223 (428)
T PRK01029 166 ELWSVDYDGQNL-RPLTQEHS-LSITPTWM-------HIGSGFPYLYVSYKLGVPKIFLGSLENPA-------------G 223 (428)
T ss_pred eEEEEcCCCCCc-eEcccCCC-CcccceEc-------cCCCceEEEEEEccCCCceEEEEECCCCC-------------c
Confidence 677888765443 33433222 45667888 8874111112333343 45666665432 3
Q ss_pred ceeeeccCCCCcEEEEEEecccCCCCEEEEEEc-----CCcEEEEEcCCC--ceEEEeccCCceeEEEEeeecCCCCCcE
Q 001391 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-----DNSIRVWDISNS--SIILEVHSPERCLLYSMKLWGDNLEALR 195 (1088)
Q Consensus 123 ~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~-----Dg~V~iWd~~~~--~~~~~~~~~~~~~~~s~~~~~~s~~~~~ 195 (1088)
+.+..+.+ .....+|+| ||+.|+..+. |-.+.+|++..+ .....+.........+..+ +|||..
T Consensus 224 ~~lt~~~g---~~~~p~wSP---DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~w---SPDG~~ 294 (428)
T PRK01029 224 KKILALQG---NQLMPTFSP---RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSF---SPDGTR 294 (428)
T ss_pred eEeecCCC---CccceEECC---CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEE---CCCCCE
Confidence 34444444 345689999 9988876542 334555777653 1222222111111223333 689987
Q ss_pred EEEEe-cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEE
Q 001391 196 IASGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV 274 (1088)
Q Consensus 196 l~sg~-~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~ 274 (1088)
|+..+ .+|...+|.+... ..+.....+..+...+....|+|||++|+..
T Consensus 295 Laf~s~~~g~~~ly~~~~~------------------------------~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~ 344 (428)
T PRK01029 295 LVFVSNKDGRPRIYIMQID------------------------------PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFC 344 (428)
T ss_pred EEEEECCCCCceEEEEECc------------------------------ccccceEEeccCCCCccceeECCCCCEEEEE
Confidence 76554 5676666654300 0112233444555667788999999998876
Q ss_pred ECC---CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEE-EEeC--CCcEEEEcCCCceeEEEccc
Q 001391 275 SDD---RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFII-TAGE--DCTCRVWGSDGKQLKMIKEH 346 (1088)
Q Consensus 275 s~D---g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~-sg~~--Dg~i~vWd~~~~~~~~~~~h 346 (1088)
+.+ ..|.+||+.+++. + .+......+....|+ +..|+ ++.. ...|.++++++.....+...
T Consensus 345 ~~~~g~~~I~v~dl~~g~~------~-----~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~ 413 (428)
T PRK01029 345 SVIKGVRQICVYDLATGRD------Y-----QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIG 413 (428)
T ss_pred EcCCCCcEEEEEECCCCCe------E-----EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC
Confidence 653 4689999987643 1 222222345667787 45555 3333 34688888855444444433
Q ss_pred CCCCeEEEEEcCC
Q 001391 347 IGRGIWRCLYDSL 359 (1088)
Q Consensus 347 ~~~~V~~l~~~~d 359 (1088)
.+ .+...+|+|-
T Consensus 414 ~g-~~~~p~Ws~~ 425 (428)
T PRK01029 414 SG-EKRFPSWGAF 425 (428)
T ss_pred CC-cccCceecCC
Confidence 34 3556667664
No 278
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=1e-06 Score=96.52 Aligned_cols=252 Identities=16% Similarity=0.158 Sum_probs=156.3
Q ss_pred EEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEE
Q 001391 57 IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVF 136 (1088)
Q Consensus 57 ~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~ 136 (1088)
+..|.+|.. +|..++--. ... ..+.++.|++|++|.++.+.. ..-...+..++..|...|.
T Consensus 728 L~nf~GH~~-~iRai~Aid------NEN----SFiSASkDKTVKLWSik~EgD--------~~~tsaCQfTY~aHkk~i~ 788 (1034)
T KOG4190|consen 728 LCNFTGHQE-KIRAIAAID------NEN----SFISASKDKTVKLWSIKPEGD--------EIGTSACQFTYQAHKKPIH 788 (1034)
T ss_pred eecccCcHH-HhHHHHhcc------ccc----ceeeccCCceEEEEEeccccC--------ccccceeeeEhhhccCccc
Confidence 345555544 566665431 222 567777899999999986541 1112346778899999999
Q ss_pred EEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEecc-CC---ceeEEEEeeecCCCCCcEE-EEEecCCeEEEEEec
Q 001391 137 DVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS-PE---RCLLYSMKLWGDNLEALRI-ASGTIYNEIIVWKVD 211 (1088)
Q Consensus 137 ~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~-~~---~~~~~s~~~~~~s~~~~~l-~sg~~dg~I~vwd~~ 211 (1088)
++.|.. +.++++++ |+-|.+||.--++.+.++.. +. ...+..+ .+.+...+ +.++...+|+++|.+
T Consensus 789 ~igfL~---~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl----~nv~~~iliAgcsaeSTVKl~DaR 859 (1034)
T KOG4190|consen 789 DIGFLA---DLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCL----ENVDRHILIAGCSAESTVKLFDAR 859 (1034)
T ss_pred ceeeee---ccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEec----ccCcchheeeeccchhhheeeecc
Confidence 999998 88888765 89999999988777664431 11 1222222 12234444 445889999999988
Q ss_pred cCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCccc
Q 001391 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK 291 (1088)
Q Consensus 212 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~ 291 (1088)
..+-. ..-.+....+.++.+.+++..|.|.+++.+-..|.|.+.|.++++.
T Consensus 860 sce~~----------------------------~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~v- 910 (1034)
T KOG4190|consen 860 SCEWT----------------------------CELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKV- 910 (1034)
T ss_pred cccce----------------------------eeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCce-
Confidence 11100 0111222245667799999999999999999999999999999753
Q ss_pred CCCCceeeeceeeeccCcceEEEE-ECCCEEEEEeCCCcEEE-EcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeC
Q 001391 292 DSDSIEEVGSSVLYGHNARVWDCC-LTDSFIITAGEDCTCRV-WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF 368 (1088)
Q Consensus 292 ~~~~~~~i~~~~~~~h~~~I~~v~-~~~~~l~sg~~Dg~i~v-Wd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~ 368 (1088)
+. ....-......++ -+++.++....|.++.| |.. +|....+.+.... +..- +..-|.-|++...
T Consensus 911 -------IN--swrpmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppe-pahf--lqsvgpSLV~a~~ 978 (1034)
T KOG4190|consen 911 -------IN--SWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPE-PAHF--LQSVGPSLVTAQN 978 (1034)
T ss_pred -------ec--cCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCc-chhh--hhccCceeEEecc
Confidence 21 1111111111122 23567888888999998 987 6655544443322 1110 1122445777776
Q ss_pred CCCEEEEEc
Q 001391 369 DSAIKVHQF 377 (1088)
Q Consensus 369 Dg~I~iwd~ 377 (1088)
...+.+|.-
T Consensus 979 Gn~lgVYad 987 (1034)
T KOG4190|consen 979 GNILGVYAD 987 (1034)
T ss_pred CcEEEEEec
Confidence 667777754
No 279
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.41 E-value=5e-05 Score=89.54 Aligned_cols=199 Identities=13% Similarity=0.045 Sum_probs=117.0
Q ss_pred eeccCCCCcEEEEEEecccCCCCEEEEEEcC---CcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEE-EEec
Q 001391 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD---NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTI 201 (1088)
Q Consensus 126 ~~l~~h~~~I~~v~f~p~~~d~~~lasgs~D---g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~-sg~~ 201 (1088)
+.+..+...+....|+| ||+.|+..+.+ ..|.+||+.+++........ .......+ +|++..|+ +...
T Consensus 192 ~~l~~~~~~~~~p~wSp---DG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~--g~~~~~~~---SpDG~~la~~~~~ 263 (430)
T PRK00178 192 VTLLQSREPILSPRWSP---DGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE--GLNGAPAW---SPDGSKLAFVLSK 263 (430)
T ss_pred eEEecCCCceeeeeECC---CCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC--CCcCCeEE---CCCCCEEEEEEcc
Confidence 33445677899999999 99988776543 36889999887654322111 11112333 68888776 4444
Q ss_pred CC--eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC-CC
Q 001391 202 YN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DR 278 (1088)
Q Consensus 202 dg--~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~-Dg 278 (1088)
+| .|.+||+. ++. ...+..+........|+|||+.++..+. ++
T Consensus 264 ~g~~~Iy~~d~~---------------------------------~~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g 309 (430)
T PRK00178 264 DGNPEIYVMDLA---------------------------------SRQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGG 309 (430)
T ss_pred CCCceEEEEECC---------------------------------CCC-eEEcccCCCCcCCeEECCCCCEEEEEECCCC
Confidence 55 57777876 222 2334445555667889999998876654 33
Q ss_pred --cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeC-CC--cEEEEcCCCceeEEEcccCCCCe
Q 001391 279 --SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE-DC--TCRVWGSDGKQLKMIKEHIGRGI 351 (1088)
Q Consensus 279 --~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~-Dg--~i~vWd~~~~~~~~~~~h~~~~V 351 (1088)
.|.++++.+++. +.+ ...+ .......|+ +..|+..+. ++ .|.+||+.+.....+..- . ..
T Consensus 310 ~~~iy~~d~~~g~~------~~l---t~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~-~-~~ 376 (430)
T PRK00178 310 KPQIYKVNVNGGRA------ERV---TFVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT-S-LD 376 (430)
T ss_pred CceEEEEECCCCCE------EEe---ecCC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC-C-CC
Confidence 566677766432 111 2112 222345666 566665553 33 478888844334444321 1 12
Q ss_pred EEEEEcCCCCEEEEEeCC-CC--EEEEEcCC
Q 001391 352 WRCLYDSLSSLLVTAGFD-SA--IKVHQFQA 379 (1088)
Q Consensus 352 ~~l~~~~dg~~l~tg~~D-g~--I~iwd~~~ 379 (1088)
....|+|||+.++..+.+ |. +.+.++.+
T Consensus 377 ~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 377 ESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred CCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 356899999988766543 33 44555543
No 280
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.39 E-value=7.9e-05 Score=87.66 Aligned_cols=198 Identities=12% Similarity=0.073 Sum_probs=113.2
Q ss_pred ccCCCCcEEEEEEecccCCCCEEEEEEc-CC--cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEE-EecCC
Q 001391 128 LPRLSHWVFDVCFLKVCNGNRSLAIGCS-DN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS-GTIYN 203 (1088)
Q Consensus 128 l~~h~~~I~~v~f~p~~~d~~~lasgs~-Dg--~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~s-g~~dg 203 (1088)
+..+...+.+..|+| ||+.|+..+. ++ .|.+||+.+++.......+. ......+ +||+..|+. .+.+|
T Consensus 213 l~~~~~~~~~p~wSP---DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g--~~~~~~w---SPDG~~La~~~~~~g 284 (448)
T PRK04792 213 LLRSPEPLMSPAWSP---DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG--INGAPRF---SPDGKKLALVLSKDG 284 (448)
T ss_pred eecCCCcccCceECC---CCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC--CcCCeeE---CCCCCEEEEEEeCCC
Confidence 345567889999999 9998877653 22 58889998876532221111 1122333 688887764 56666
Q ss_pred e--EEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC-CC--
Q 001391 204 E--IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DR-- 278 (1088)
Q Consensus 204 ~--I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~-Dg-- 278 (1088)
. |.++|+. ++. ...+..+.......+|+|||++++..+. ++
T Consensus 285 ~~~Iy~~dl~---------------------------------tg~-~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~ 330 (448)
T PRK04792 285 QPEIYVVDIA---------------------------------TKA-LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKP 330 (448)
T ss_pred CeEEEEEECC---------------------------------CCC-eEECccCCCCccceEECCCCCEEEEEECCCCCc
Confidence 5 6666665 222 2334445556677899999998876654 34
Q ss_pred cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeC-CCc--EEEEcCCCceeEEEcccCCCCeEE
Q 001391 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE-DCT--CRVWGSDGKQLKMIKEHIGRGIWR 353 (1088)
Q Consensus 279 ~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~-Dg~--i~vWd~~~~~~~~~~~h~~~~V~~ 353 (1088)
.|.++|+.+++. +.+ +..++ .....+|+ +..|+..+. ++. |.++|+.+.....+.... ....
T Consensus 331 ~Iy~~dl~~g~~------~~L---t~~g~--~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~--~d~~ 397 (448)
T PRK04792 331 QIYRVNLASGKV------SRL---TFEGE--QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTR--LDES 397 (448)
T ss_pred eEEEEECCCCCE------EEE---ecCCC--CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCC--CCCC
Confidence 455566665432 111 22222 23345676 556655443 444 445666444444443322 1234
Q ss_pred EEEcCCCCEEEEEeC-CCC--EEEEEcCCC
Q 001391 354 CLYDSLSSLLVTAGF-DSA--IKVHQFQAF 380 (1088)
Q Consensus 354 l~~~~dg~~l~tg~~-Dg~--I~iwd~~~~ 380 (1088)
..|+|||+.|+.... +|. +.+++.++.
T Consensus 398 ps~spdG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 398 PSVAPNGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred ceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 579999997766554 443 555565543
No 281
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.39 E-value=0.00029 Score=81.84 Aligned_cols=271 Identities=10% Similarity=-0.000 Sum_probs=144.7
Q ss_pred CEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEE----EecccccccCCCccceeeEEEEECCCEEEEEEeccCCCC
Q 001391 36 PFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGI----SCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSP 110 (1088)
Q Consensus 36 ~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i----~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~ 110 (1088)
..|.++. ++.|.-+|.++|+.+.+...........- .++.. +...++ .+++...++.+.-+|.+++.
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~--~~v~~~----~v~v~~~~g~l~ald~~tG~-- 141 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGG--VTVAGG----KVYIGSEKGQVYALNAEDGE-- 141 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccc--cEEECC----EEEEEcCCCEEEEEECCCCC--
Confidence 3444444 68999999999999887764321111110 01100 000122 56666668899999987643
Q ss_pred CCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeE----EEEee
Q 001391 111 NSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLL----YSMKL 186 (1088)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~----~s~~~ 186 (1088)
.+-+.... +.+.+--.. .+..++.+..++.+.-+|..+|+.+-+......... .+...
T Consensus 142 -------------~~W~~~~~-~~~~ssP~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v 203 (394)
T PRK11138 142 -------------VAWQTKVA-GEALSRPVV----SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT 203 (394)
T ss_pred -------------CcccccCC-CceecCCEE----ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE
Confidence 11111111 122221111 234566777899999999999998877653311100 01111
Q ss_pred ecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCC-CCEEEEEEc
Q 001391 187 WGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE-GSIFRIEWS 265 (1088)
Q Consensus 187 ~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~V~~v~~s 265 (1088)
.+..++.++.+|.+...|..+++.. |..... .+. ..+. .....+..+
T Consensus 204 -----~~~~v~~~~~~g~v~a~d~~~G~~~-----------------------W~~~~~-~~~---~~~~~~~~~~~~~s 251 (394)
T PRK11138 204 -----AFGGAIVGGDNGRVSAVLMEQGQLI-----------------------WQQRIS-QPT---GATEIDRLVDVDTT 251 (394)
T ss_pred -----ECCEEEEEcCCCEEEEEEccCChhh-----------------------heeccc-cCC---CccchhcccccCCC
Confidence 1235666778898888887732211 110000 000 0000 000011112
Q ss_pred C--CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEE
Q 001391 266 S--CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKM 342 (1088)
Q Consensus 266 p--~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~ 342 (1088)
| .+..++.++.++.+...|..+++. +-. ...+ ....+...+..++.++.+|.+..+|. +|+.+..
T Consensus 252 P~v~~~~vy~~~~~g~l~ald~~tG~~--------~W~-~~~~---~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~ 319 (394)
T PRK11138 252 PVVVGGVVYALAYNGNLVALDLRSGQI--------VWK-REYG---SVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWS 319 (394)
T ss_pred cEEECCEEEEEEcCCeEEEEECCCCCE--------EEe-ecCC---CccCcEEECCEEEEEcCCCeEEEEECCCCcEEEc
Confidence 2 245677777889999999988642 110 1111 11223445778888899999999999 7776654
Q ss_pred EcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 343 IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 343 ~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
..........+..+ .+.+|+.++.||.+.+.|..
T Consensus 320 ~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~ 353 (394)
T PRK11138 320 QSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINRE 353 (394)
T ss_pred ccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECC
Confidence 43222211222222 24568888999999998874
No 282
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.38 E-value=0.0014 Score=73.05 Aligned_cols=261 Identities=11% Similarity=0.110 Sum_probs=146.1
Q ss_pred CCceEEecCCCceeeeeEE-----EEEeccCCCCCCCCEEEEEe-----------CCeEEEEECCCCeeEEEEeeeCC--
Q 001391 4 KDLSEWRLDVGQYLGEISA-----LCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDLEAGTLIRPFQVFHG-- 65 (1088)
Q Consensus 4 ~~i~iWdl~~g~~~~~V~~-----v~fs~~pd~~~~~~~laag~-----------d~~I~vwd~~tg~~~~~~~~~~~-- 65 (1088)
++|.+-|..+++..+.|.. ..+| || ++.|.++. +..|.|||.++++.++.+.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~~s--pD----g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~ 100 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPVVA--SD----GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPR 100 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCceeEC--CC----CCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCch
Confidence 7899999999886555441 2388 88 55555432 38999999999999999886332
Q ss_pred ----cceEEEEecccccccCCCccceeeEEEEE--C-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEE
Q 001391 66 ----IRLHGISCNFINCTEGSVSTRVTFEVALF--G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDV 138 (1088)
Q Consensus 66 ----~~V~~i~~s~~~~~~~~d~~~~~~~la~~--g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v 138 (1088)
..-..++++ ||| ..+.++ . +..|.+.|+.... .+..+.- .+...-.
T Consensus 101 ~~~~~~~~~~~ls-------~dg----k~l~V~n~~p~~~V~VvD~~~~k---------------vv~ei~v-p~~~~vy 153 (352)
T TIGR02658 101 FLVGTYPWMTSLT-------PDN----KTLLFYQFSPSPAVGVVDLEGKA---------------FVRMMDV-PDCYHIF 153 (352)
T ss_pred hhccCccceEEEC-------CCC----CEEEEecCCCCCEEEEEECCCCc---------------EEEEEeC-CCCcEEE
Confidence 123477888 888 444443 3 7999999998643 3333221 1111111
Q ss_pred EEecccCCCCEEEEEEcCCcEEEEEcCC-CceE-EE--eccCCceeEEEE-eeecCCCCCcEEEEEecCCeEEEEEeccC
Q 001391 139 CFLKVCNGNRSLAIGCSDNSIRVWDISN-SSII-LE--VHSPERCLLYSM-KLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (1088)
Q Consensus 139 ~f~p~~~d~~~lasgs~Dg~V~iWd~~~-~~~~-~~--~~~~~~~~~~s~-~~~~~s~~~~~l~sg~~dg~I~vwd~~~~ 213 (1088)
..+ +...+ +-+.||......+.. ++.. .. +.......++.- .+ ...++.++..... |+|.+-|+...
T Consensus 154 ~t~----e~~~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~--~~~dg~~~~vs~e-G~V~~id~~~~ 225 (352)
T TIGR02658 154 PTA----NDTFF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAY--SNKSGRLVWPTYT-GKIFQIDLSSG 225 (352)
T ss_pred Eec----CCccE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCce--EcCCCcEEEEecC-CeEEEEecCCC
Confidence 111 11111 112344444433322 1111 11 000101111110 11 0226767766655 99999997521
Q ss_pred ccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe-------CCCCCEEEEEEcCCCCEEEEEE----------C
Q 001391 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-------GHEGSIFRIEWSSCGSKLVSVS----------D 276 (1088)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-------gh~~~V~~v~~sp~g~~l~s~s----------~ 276 (1088)
... ....+..+. -..+.+.-++++|+++++.... .
T Consensus 226 ~~~----------------------------~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~ 277 (352)
T TIGR02658 226 DAK----------------------------FLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTA 277 (352)
T ss_pred cce----------------------------ecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCC
Confidence 111 111111111 0223344599999999887743 1
Q ss_pred CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CC-EEEEEe-CCCcEEEEcC-CCceeEEEc
Q 001391 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS-FIITAG-EDCTCRVWGS-DGKQLKMIK 344 (1088)
Q Consensus 277 Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~-~l~sg~-~Dg~i~vWd~-~~~~~~~~~ 344 (1088)
.+.|.++|..+.+ .+. .... ..+++.++++ +. +|++.. .++.|.+.|. +++.+..+.
T Consensus 278 ~~~V~ViD~~t~k--------vi~-~i~v--G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 278 SRFLFVVDAKTGK--------RLR-KIEL--GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred CCEEEEEECCCCe--------EEE-EEeC--CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 2579999988853 333 1222 3478999998 45 666555 6789999999 788888873
No 283
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.37 E-value=8.6e-05 Score=87.51 Aligned_cols=231 Identities=10% Similarity=-0.015 Sum_probs=129.3
Q ss_pred eEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC---CCEEEEEEeccCCCCCCCCCCccccc
Q 001391 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPETCVN 121 (1088)
Q Consensus 45 ~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g---d~~v~iw~l~~~~~~~~~~~~~~~~~ 121 (1088)
.|.++|...+. ...+..+.. .+....|+ |||+ .++.++. ...|.+|++....
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~-~~~~p~wS-------pDG~---~la~~s~~~~~~~l~~~~l~~g~------------- 234 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSRE-PILSPRWS-------PDGK---RIAYVSFEQKRPRIFVQNLDTGR------------- 234 (430)
T ss_pred EEEEECCCCCC-ceEEecCCC-ceeeeeEC-------CCCC---EEEEEEcCCCCCEEEEEECCCCC-------------
Confidence 58888877544 344444333 68899999 8883 3433332 2468888887543
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEE-EEEcCC--cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEE
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS 198 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~la-sgs~Dg--~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~s 198 (1088)
.+.+.... +.+...+|+| ||+.|+ +...++ .|.+||+.+++... +..+. ....+..+ ++++..|+.
T Consensus 235 ~~~l~~~~---g~~~~~~~Sp---DG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~-~~~~~~~~---spDg~~i~f 303 (430)
T PRK00178 235 REQITNFE---GLNGAPAWSP---DGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHP-AIDTEPFW---GKDGRTLYF 303 (430)
T ss_pred EEEccCCC---CCcCCeEECC---CCCEEEEEEccCCCceEEEEECCCCCeEE-cccCC-CCcCCeEE---CCCCCEEEE
Confidence 22333233 3455789999 998776 444454 58888998876533 32221 12223333 578877665
Q ss_pred Ee-cCC--eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEE
Q 001391 199 GT-IYN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (1088)
Q Consensus 199 g~-~dg--~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s 275 (1088)
.+ .+| .|.++++. .+.. ..+...........|+|+|++++..+
T Consensus 304 ~s~~~g~~~iy~~d~~---------------------------------~g~~-~~lt~~~~~~~~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 304 TSDRGGKPQIYKVNVN---------------------------------GGRA-ERVTFVGNYNARPRLSADGKTLVMVH 349 (430)
T ss_pred EECCCCCceEEEEECC---------------------------------CCCE-EEeecCCCCccceEECCCCCEEEEEE
Confidence 44 344 45555654 1211 11111112234578999999988776
Q ss_pred CC-C--cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeC-CC--cEEEEcCCCceeEEEcccC
Q 001391 276 DD-R--SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE-DC--TCRVWGSDGKQLKMIKEHI 347 (1088)
Q Consensus 276 ~D-g--~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~-Dg--~i~vWd~~~~~~~~~~~h~ 347 (1088)
.+ + .|.+||+.++.. +.+. .. .......|+ +..++..+. ++ .+.+++.+|.....+..+.
T Consensus 350 ~~~~~~~l~~~dl~tg~~------~~lt---~~---~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~~ 417 (430)
T PRK00178 350 RQDGNFHVAAQDLQRGSV------RILT---DT---SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLPTAQ 417 (430)
T ss_pred ccCCceEEEEEECCCCCE------EEcc---CC---CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcCCC
Confidence 53 3 578888877532 2221 11 111234566 455555443 33 4666677776666665554
Q ss_pred CCCeEEEEEcC
Q 001391 348 GRGIWRCLYDS 358 (1088)
Q Consensus 348 ~~~V~~l~~~~ 358 (1088)
+ .+...+|+|
T Consensus 418 g-~~~~p~ws~ 427 (430)
T PRK00178 418 G-EVREPSWSP 427 (430)
T ss_pred C-CcCCCccCC
Confidence 4 366666665
No 284
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.33 E-value=7e-06 Score=82.77 Aligned_cols=250 Identities=12% Similarity=0.166 Sum_probs=134.9
Q ss_pred eEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeC-CcceEEEEecccccccCCCcc----ceeeEEEE
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFH-GIRLHGISCNFINCTEGSVST----RVTFEVAL 93 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~-~~~V~~i~~s~~~~~~~~d~~----~~~~~la~ 93 (1088)
|+.+.|+ -+ ..|+.+. ++.+.....-++.++...+.-. -.+-+..+.+.. |+.. ..+..+++
T Consensus 39 ~~~~~~v--~~-----~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~se-----p~p~~~~s~~~t~V~~ 106 (319)
T KOG4714|consen 39 LSKVSLS--AE-----YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSE-----IDPNDACTMTDNRVCI 106 (319)
T ss_pred EEEeech--hh-----heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCC-----CCCcccccccCCceEe
Confidence 6777777 33 3455555 6777777777666655443211 123444444322 2111 01134555
Q ss_pred EC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE-----cCCcEEEEEcCCC
Q 001391 94 FG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-----SDNSIRVWDISNS 167 (1088)
Q Consensus 94 ~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs-----~Dg~V~iWd~~~~ 167 (1088)
.+ |+.+.+.+.+.. ++..+....-...-.+.+... .++.+.+++ .-+..+.|+++..
T Consensus 107 ~~~dg~~~v~s~~~~--------------~~~~~~i~~~~~~~as~~~~~---~~~~i~s~~~g~~n~~d~~~a~~~~p~ 169 (319)
T KOG4714|consen 107 GYADGSLAVFSTDKD--------------LALMSRIPSIHSGSASRKICR---HGNSILSGGCGNWNAQDNFYANTLDPI 169 (319)
T ss_pred cCCCceEEEEechHH--------------Hhhhhhcccccccccccceee---cccEEecCCcceEeeccceeeeccccc
Confidence 44 899999987741 122222221111111222222 334444332 1223455665443
Q ss_pred ceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccccee
Q 001391 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1088)
Q Consensus 168 ~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 247 (1088)
+....-+..... +.+++.+ .....+++.|+.||.+.+||++. ..-
T Consensus 170 ~t~~~~~~~~~~-v~~l~~h--p~qq~~v~cgt~dg~~~l~d~rn--------------------------------~~~ 214 (319)
T KOG4714|consen 170 KTLIPSKKALDA-VTALCSH--PAQQHLVCCGTDDGIVGLWDARN--------------------------------VAM 214 (319)
T ss_pred cccccccccccc-chhhhCC--cccccEEEEecCCCeEEEEEccc--------------------------------ccc
Confidence 322111111111 3333332 33456888999999999999981 122
Q ss_pred eeEEEeCCCCCEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCccc------------CCCCcee---eeceeeeccCcce
Q 001391 248 NLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWK------------DSDSIEE---VGSSVLYGHNARV 311 (1088)
Q Consensus 248 ~~~~~~gh~~~V~~v~~sp-~g~~l~s~s~Dg~v~iWd~~~~~~~------------~~~~~~~---i~~~~~~~h~~~I 311 (1088)
+...++.|+..|..|-|+| ++..|.++++||.+.-||..+.-.. ..+..+. +.+ .+......|
T Consensus 215 p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~-ll~~~~~Si 293 (319)
T KOG4714|consen 215 PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITS-LLPSRSLSI 293 (319)
T ss_pred hHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeec-cccccceee
Confidence 3445678999999999999 5678999999999999998753211 1111111 110 112223345
Q ss_pred EEEEECCCEEEEEeCCCcEEEEc
Q 001391 312 WDCCLTDSFIITAGEDCTCRVWG 334 (1088)
Q Consensus 312 ~~v~~~~~~l~sg~~Dg~i~vWd 334 (1088)
.++...+..|++|+.-+.|++.+
T Consensus 294 nsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 294 NSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred eeeeccCceEEeccccceEEEec
Confidence 55556688888888888887764
No 285
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=2e-06 Score=94.31 Aligned_cols=299 Identities=13% Similarity=0.156 Sum_probs=172.2
Q ss_pred eeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeC
Q 001391 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGE 326 (1088)
Q Consensus 247 ~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~ 326 (1088)
-.+..+.||...|..++-..+...+++++.|++|++|.++..... ....-..++...|..+|.++.|-...-..++.
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~---~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc 802 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE---IGTSACQFTYQAHKKPIHDIGFLADLRSIASC 802 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc---cccceeeeEhhhccCcccceeeeeccceeeec
Confidence 456678899999999988888888999999999999999764220 01111125888999999999998444344566
Q ss_pred CCcEEEEcC-CCceeEEEcc-cCCCCeEEEEEcC--CCCEEEEE-eCCCCEEEEEcCCCCCCcccCCccccccCCCcceE
Q 001391 327 DCTCRVWGS-DGKQLKMIKE-HIGRGIWRCLYDS--LSSLLVTA-GFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIF 401 (1088)
Q Consensus 327 Dg~i~vWd~-~~~~~~~~~~-h~~~~V~~l~~~~--dg~~l~tg-~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1088)
||.|.+||. .|+++.++.. .....+..+...+ +..+++.| +...+|+++|.+.-. +-. -+
T Consensus 803 D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce------------~~~---E~ 867 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCE------------WTC---EL 867 (1034)
T ss_pred cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccc------------cee---eE
Confidence 999999998 7777764321 1111233444333 44444444 788999999985311 001 11
Q ss_pred EeeeCCCccceeeccCCCCceEEEEeccCCe-EEEEecCCeEEEEEeccCCcce-eEEeeeecCCcceEEEecCCCCCCC
Q 001391 402 SIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT-LYIATNHGYLYHTKLCDMDSVN-WNKILQVSEGMPIICMDLLSNEPKY 479 (1088)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~-ll~~t~~g~i~~~~~~~~~~~~-~~~~~~~~~~~~i~~l~~~~~~~~~ 479 (1088)
.++ + ..+.+..+|+++..+.|. +.++-++|.+...+..+..... |+.. +... ..+
T Consensus 868 kVc--n-------a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm-----ecdl---------lql 924 (1034)
T KOG4190|consen 868 KVC--N-------APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM-----ECDL---------LQL 924 (1034)
T ss_pred Eec--c-------CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc-----cchh---------hhh
Confidence 111 0 012235689999999774 4455678887754443333221 4322 1111 112
Q ss_pred cCCCCCeEEEecCCCCEEE-EEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCc
Q 001391 480 PCGIDDWVALGDGKGNMTI-VRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSS 558 (1088)
Q Consensus 480 s~~~~~~la~g~~dg~I~i-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~ 558 (1088)
..+.++.++....|..+-+ |...++....+ .+-+.++.+ . ...-|.-|++......+.+|.-.....
T Consensus 925 aapsdq~L~~saldHslaVnWhaldgimh~q----~kpppepah-f------lqsvgpSLV~a~~Gn~lgVYad~a~~h- 992 (1034)
T KOG4190|consen 925 AAPSDQALAQSALDHSLAVNWHALDGIMHLQ----DKPPPEPAH-F------LQSVGPSLVTAQNGNILGVYADSAELH- 992 (1034)
T ss_pred cCchhHHHHhhcccceeEeeehhcCCeeeec----cCCCCcchh-h------hhccCceeEEeccCcEEEEEecchhhh-
Confidence 2345567777777777777 75544322110 000011111 0 112345677776777788885321110
Q ss_pred ccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEE
Q 001391 559 VCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVL 606 (1088)
Q Consensus 559 ~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~I 606 (1088)
.+ ...+---+. ...+..|+++.-|-+.-...|.+.|.|.+
T Consensus 993 -a~---stitKiR~d----~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 993 -AE---STITKIRPD----EFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred -hh---hhhcccccc----ccCCccceeeeccccchhhccCCCCceee
Confidence 00 000000111 23556788888887777778999998876
No 286
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.30 E-value=0.00032 Score=90.44 Aligned_cols=221 Identities=8% Similarity=-0.048 Sum_probs=126.6
Q ss_pred cEEEEEEecccCCCCEEEEEE-cCCcEEEEEcCCCceEEEeccC-C---------------ceeEEEEeeecCCC-CCcE
Q 001391 134 WVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISNSSIILEVHSP-E---------------RCLLYSMKLWGDNL-EALR 195 (1088)
Q Consensus 134 ~I~~v~f~p~~~d~~~lasgs-~Dg~V~iWd~~~~~~~~~~~~~-~---------------~~~~~s~~~~~~s~-~~~~ 195 (1088)
....+++.+ +++.|+++. ..+.|+++|+.++.. .++.+. . ...-+.+++ ++ ++.+
T Consensus 625 ~P~GIavd~---~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~---dp~~g~L 697 (1057)
T PLN02919 625 RPQGLAYNA---KKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCF---EPVNEKV 697 (1057)
T ss_pred CCcEEEEeC---CCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEE---ecCCCeE
Confidence 468899998 888766664 356799999877643 222110 0 001123444 34 5667
Q ss_pred EEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCC-EEEEE
Q 001391 196 IASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSV 274 (1088)
Q Consensus 196 l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~-~l~s~ 274 (1088)
+++.+.++.|++||..+..... +..++... .. .+.. .....-....+|+++|+++ .+++-
T Consensus 698 yVad~~~~~I~v~d~~~g~v~~-------~~G~G~~~------~~----~g~~--~~~~~~~~P~GIavspdG~~LYVAD 758 (1057)
T PLN02919 698 YIAMAGQHQIWEYNISDGVTRV-------FSGDGYER------NL----NGSS--GTSTSFAQPSGISLSPDLKELYIAD 758 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEE-------EecCCccc------cC----CCCc--cccccccCccEEEEeCCCCEEEEEE
Confidence 7777788999999986321110 00000000 00 0000 0001123467899999998 45666
Q ss_pred ECCCcEEEEEcCCCcccC---CCCceeeeceeee--------ccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeE
Q 001391 275 SDDRSARIWEVRAEYWKD---SDSIEEVGSSVLY--------GHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLK 341 (1088)
Q Consensus 275 s~Dg~v~iWd~~~~~~~~---~~~~~~i~~~~~~--------~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~ 341 (1088)
+.++.|++||+.++.... ...........+. ..-.....++++ +.++++-..++.|++||..+..+.
T Consensus 759 s~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 759 SESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT 838 (1057)
T ss_pred CCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence 778999999998653200 0000000000000 001123567776 567888888999999999554444
Q ss_pred EEcccC-------------CCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCC
Q 001391 342 MIKEHI-------------GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (1088)
Q Consensus 342 ~~~~h~-------------~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~ 380 (1088)
.+.+.. ......++++++|+++++-+.++.|++||+.+.
T Consensus 839 tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 839 TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 433211 013568999999999999899999999999653
No 287
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.28 E-value=0.00016 Score=85.10 Aligned_cols=231 Identities=10% Similarity=0.030 Sum_probs=125.9
Q ss_pred eEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE-CC--CEEEEEEeccCCCCCCCCCCccccc
Q 001391 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GE--KRVKLFELNFELSPNSQYQPETCVN 121 (1088)
Q Consensus 45 ~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd--~~v~iw~l~~~~~~~~~~~~~~~~~ 121 (1088)
.|.++|...... +.+.... ..+....|| |||+ .++.++ .+ ..|.+||+....
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~-~~~~~p~wS-------PDG~---~La~~s~~~g~~~L~~~dl~tg~------------- 253 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSP-EPLMSPAWS-------PDGR---KLAYVSFENRKAEIFVQDIYTQV------------- 253 (448)
T ss_pred EEEEEeCCCCCc-eEeecCC-CcccCceEC-------CCCC---EEEEEEecCCCcEEEEEECCCCC-------------
Confidence 677788655433 3333323 368889999 8883 333333 23 357777776432
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEEE-EEcCCc--EEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEE
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI-GCSDNS--IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS 198 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~las-gs~Dg~--V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~s 198 (1088)
.+.+..+.+ .....+|+| ||+.|+. ...++. |.++|+.+++... +..+. .......+ ++|+..|+.
T Consensus 254 ~~~lt~~~g---~~~~~~wSP---DG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~-~~~~~p~w---SpDG~~I~f 322 (448)
T PRK04792 254 REKVTSFPG---INGAPRFSP---DGKKLALVLSKDGQPEIYVVDIATKALTR-ITRHR-AIDTEPSW---HPDGKSLIF 322 (448)
T ss_pred eEEecCCCC---CcCCeeECC---CCCEEEEEEeCCCCeEEEEEECCCCCeEE-CccCC-CCccceEE---CCCCCEEEE
Confidence 233333333 334689999 9997764 455665 7777887776433 22221 12223333 578877665
Q ss_pred Ee-cCCe--EEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEE
Q 001391 199 GT-IYNE--IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (1088)
Q Consensus 199 g~-~dg~--I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s 275 (1088)
.+ .++. |.++|+. +++ ...+..+.......+|+|||++++..+
T Consensus 323 ~s~~~g~~~Iy~~dl~---------------------------------~g~-~~~Lt~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 323 TSERGGKPQIYRVNLA---------------------------------SGK-VSRLTFEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred EECCCCCceEEEEECC---------------------------------CCC-EEEEecCCCCCcCeeECCCCCEEEEEE
Confidence 44 3444 4444554 222 112221222234578999999987765
Q ss_pred C-CCc--EEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEE-EeCCCc--EEEEcCCCceeEEEcccC
Q 001391 276 D-DRS--ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIIT-AGEDCT--CRVWGSDGKQLKMIKEHI 347 (1088)
Q Consensus 276 ~-Dg~--v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~s-g~~Dg~--i~vWd~~~~~~~~~~~h~ 347 (1088)
. ++. |.++|+.++.. +.+ ... .......|+ +..|+. ...++. +.+++.+|+....+..+.
T Consensus 369 ~~~g~~~I~~~dl~~g~~------~~l-----t~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~~~ 436 (448)
T PRK04792 369 RTNGKFNIARQDLETGAM------QVL-----TST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLPAGQ 436 (448)
T ss_pred ecCCceEEEEEECCCCCe------EEc-----cCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcCCC
Confidence 5 343 44566666432 111 111 111123566 455544 444443 667777888777776665
Q ss_pred CCCeEEEEEcC
Q 001391 348 GRGIWRCLYDS 358 (1088)
Q Consensus 348 ~~~V~~l~~~~ 358 (1088)
+ .+...+|+|
T Consensus 437 g-~~~~p~Wsp 446 (448)
T PRK04792 437 G-EVKSPAWSP 446 (448)
T ss_pred C-CcCCCccCC
Confidence 5 366777776
No 288
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.26 E-value=1.5e-05 Score=85.56 Aligned_cols=82 Identities=15% Similarity=0.173 Sum_probs=66.2
Q ss_pred ccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeecccccccceeEEEEEeccCCceEE
Q 001391 576 SSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEI 655 (1088)
Q Consensus 576 ~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~~~l 655 (1088)
..+|-..++.+++|||+++|+++++|..|+|=.++.... + -..+.||. ..|+.++.. ++ ..|
T Consensus 147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~----------I--esfclGH~--eFVS~isl~---~~-~~L 208 (390)
T KOG3914|consen 147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV----------I--ESFCLGHK--EFVSTISLT---DN-YLL 208 (390)
T ss_pred hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc----------h--hhhccccH--hheeeeeec---cC-cee
Confidence 458999999999999999999999999999988774211 1 12345565 689999888 33 568
Q ss_pred EEecCCCeEEEEEeecCCcc
Q 001391 656 RSTGGDGCICYLEYDKDRES 675 (1088)
Q Consensus 656 ~t~g~Dg~i~iw~~~~~~~~ 675 (1088)
+|+|+|+++++|++..+.+.
T Consensus 209 lS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 209 LSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred eecCCCCcEEEEecccCCcc
Confidence 99999999999999887654
No 289
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=0.00024 Score=79.05 Aligned_cols=109 Identities=13% Similarity=0.114 Sum_probs=76.3
Q ss_pred EEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCC
Q 001391 69 HGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNR 148 (1088)
Q Consensus 69 ~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~ 148 (1088)
.-+.|| |-| .+|++.--.-|.+|--+. +..++.+ .|+ .|.-+.||| ..+
T Consensus 214 tyv~wS-------P~G----TYL~t~Hk~GI~lWGG~~---------------f~r~~RF-~Hp-~Vq~idfSP---~Ek 262 (698)
T KOG2314|consen 214 TYVRWS-------PKG----TYLVTFHKQGIALWGGES---------------FDRIQRF-YHP-GVQFIDFSP---NEK 262 (698)
T ss_pred eeEEec-------CCc----eEEEEEeccceeeecCcc---------------HHHHHhc-cCC-CceeeecCC---ccc
Confidence 456778 777 789999889999996442 3333333 254 488999999 999
Q ss_pred EEEEEEc-----------CCcEEEEEcCCCceEEEeccCC-ceeEEEEeeecCCCCCcEEEEEecCCeEEEEEec
Q 001391 149 SLAIGCS-----------DNSIRVWDISNSSIILEVHSPE-RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 149 ~lasgs~-----------Dg~V~iWd~~~~~~~~~~~~~~-~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
+|+|=+. ...++|||+.+|.....+.... ....|.+- ..+-|+.++|--+. ..|.|++..
T Consensus 263 YLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~f--rWS~DdKy~Arm~~-~sisIyEtp 334 (698)
T KOG2314|consen 263 YLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIF--RWSHDDKYFARMTG-NSISIYETP 334 (698)
T ss_pred eEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceE--EeccCCceeEEecc-ceEEEEecC
Confidence 9999653 2579999999999888776532 22333332 23567888887655 678888865
No 290
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.19 E-value=0.0028 Score=65.97 Aligned_cols=234 Identities=10% Similarity=0.054 Sum_probs=124.0
Q ss_pred CCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEE
Q 001391 82 SVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRV 161 (1088)
Q Consensus 82 ~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~i 161 (1088)
.+| .+||+-.|..|.|=..+.+- . .+..++ +..+.-.-.=.-++|+| |+.+||.+...|+|++
T Consensus 7 ~~G----k~lAi~qd~~iEiRsa~Ddf------~---si~~kc-qVpkD~~PQWRkl~WSp---D~tlLa~a~S~G~i~v 69 (282)
T PF15492_consen 7 SDG----KLLAILQDQCIEIRSAKDDF------S---SIIGKC-QVPKDPNPQWRKLAWSP---DCTLLAYAESTGTIRV 69 (282)
T ss_pred CCC----cEEEEEeccEEEEEeccCCc------h---heeEEE-ecCCCCCchheEEEECC---CCcEEEEEcCCCeEEE
Confidence 677 78888888887776554321 0 011111 11111112346799999 9999999999999999
Q ss_pred EEcCCCceEEEeccCC------ceeEEEEeeecCCCC---CcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCC
Q 001391 162 WDISNSSIILEVHSPE------RCLLYSMKLWGDNLE---ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (1088)
Q Consensus 162 Wd~~~~~~~~~~~~~~------~~~~~s~~~~~~s~~---~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~ 232 (1088)
+|+... .+..+.... ...+-.+.|.....+ ...|+.-+.+|.++-+-+..+...+
T Consensus 70 fdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~--------------- 133 (282)
T PF15492_consen 70 FDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQG--------------- 133 (282)
T ss_pred Eecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCc---------------
Confidence 999653 333433211 122333333322111 1134444556666666553111000
Q ss_pred CCceeEecccccceeeeEEEeC-CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcce
Q 001391 233 DFKCFKLQDQQHTAVNLFRLVG-HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311 (1088)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~g-h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I 311 (1088)
........+.. +...|.++.++|..+.|+.|+.... +++. -..-...+
T Consensus 134 -----------y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~--------------s~a~~~GL 182 (282)
T PF15492_consen 134 -----------YQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM--------------SKASSCGL 182 (282)
T ss_pred -----------ceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc--------------ccccccCc
Confidence 11222333333 4778999999999988877665322 1100 00001111
Q ss_pred EEEEEC---CCEE-EEEeCCCc------EEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 312 WDCCLT---DSFI-ITAGEDCT------CRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 312 ~~v~~~---~~~l-~sg~~Dg~------i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
++=..- +.+. ++..+|+. ..+|.+..-.+...++...+.|..|.++|||..||+...+|.|.+|++..
T Consensus 183 taWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 183 TAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred eEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 111111 1111 22222222 12333311111122233334799999999999999999999999999954
No 291
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.19 E-value=0.00038 Score=81.30 Aligned_cols=204 Identities=11% Similarity=-0.046 Sum_probs=112.4
Q ss_pred CCCCcEEEEEEecccCCCCEE---EEEEcCC--cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEe-cCC
Q 001391 130 RLSHWVFDVCFLKVCNGNRSL---AIGCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT-IYN 203 (1088)
Q Consensus 130 ~h~~~I~~v~f~p~~~d~~~l---asgs~Dg--~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~-~dg 203 (1088)
.....+.+=+|+| ||+.+ ++...++ .|.+.++.+++.......+. ......+ +|||..|+... .+|
T Consensus 182 ~~~~~~~sP~wSP---DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g--~~~~p~w---SPDG~~Laf~s~~~g 253 (428)
T PRK01029 182 QEHSLSITPTWMH---IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG--NQLMPTF---SPRKKLLAFISDRYG 253 (428)
T ss_pred cCCCCcccceEcc---CCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC--CccceEE---CCCCCEEEEEECCCC
Confidence 3445567789999 98742 2444443 57777887775433222111 1122333 68998777543 223
Q ss_pred ----eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEE-CCC
Q 001391 204 ----EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS-DDR 278 (1088)
Q Consensus 204 ----~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s-~Dg 278 (1088)
.+.+|++.... .+.......++.+.....+|+|||+.|+..+ .++
T Consensus 254 ~~di~~~~~~~~~g~------------------------------~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g 303 (428)
T PRK01029 254 NPDLFIQSFSLETGA------------------------------IGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG 303 (428)
T ss_pred CcceeEEEeecccCC------------------------------CCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC
Confidence 23335554100 1122222223334456789999999887765 466
Q ss_pred cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC---CcEEEEcCCCceeEEEcccCCCCeEE
Q 001391 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSDGKQLKMIKEHIGRGIWR 353 (1088)
Q Consensus 279 ~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D---g~i~vWd~~~~~~~~~~~h~~~~V~~ 353 (1088)
...+|.+..... ..... .+..+...+....|+ +..|+..+.+ ..|.+||+.+.....+..... .+..
T Consensus 304 ~~~ly~~~~~~~-----g~~~~--~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~-~~~~ 375 (428)
T PRK01029 304 RPRIYIMQIDPE-----GQSPR--LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPE-NKES 375 (428)
T ss_pred CceEEEEECccc-----ccceE--EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCC-Cccc
Confidence 666665432100 01111 333344456677888 5666655433 368999995444455543333 4678
Q ss_pred EEEcCCCCEEEEEeC---CCCEEEEEcCC
Q 001391 354 CLYDSLSSLLVTAGF---DSAIKVHQFQA 379 (1088)
Q Consensus 354 l~~~~dg~~l~tg~~---Dg~I~iwd~~~ 379 (1088)
..|+|||+.|+.... ...|.++++.+
T Consensus 376 p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 376 PSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 899999997765433 24566677754
No 292
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.19 E-value=6.2e-06 Score=60.23 Aligned_cols=38 Identities=37% Similarity=0.594 Sum_probs=36.1
Q ss_pred eeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 001391 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (1088)
Q Consensus 247 ~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd 284 (1088)
+++..+.+|.+.|.+|+|+|++.++++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999999999999999997
No 293
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.15 E-value=0.0012 Score=85.27 Aligned_cols=269 Identities=12% Similarity=0.091 Sum_probs=140.9
Q ss_pred EEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeee--C-----------CcceEEEEecccccccCCCccce
Q 001391 22 ALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVF--H-----------GIRLHGISCNFINCTEGSVSTRV 87 (1088)
Q Consensus 22 ~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~--~-----------~~~V~~i~~s~~~~~~~~d~~~~ 87 (1088)
.++++ ++ .+++.++-. ++.|++||.. |..+..+... . -...+++++. ++++
T Consensus 572 gvavd--~~---~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd-------~~gn-- 636 (1057)
T PLN02919 572 KLAID--LL---NNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYN-------AKKN-- 636 (1057)
T ss_pred eEEEE--CC---CCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEe-------CCCC--
Confidence 56777 54 145555555 5899999975 5555444321 0 0135778887 5541
Q ss_pred eeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccC-------CCCcEEEEEEecccCCCC-EEEEEEcCCc
Q 001391 88 TFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR-------LSHWVFDVCFLKVCNGNR-SLAIGCSDNS 158 (1088)
Q Consensus 88 ~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~-------h~~~I~~v~f~p~~~d~~-~lasgs~Dg~ 158 (1088)
.+.++ .+++.|+++|+...... .+... ......+.+ .-..-++++|+| ++. +.++.+.++.
T Consensus 637 -~LYVaDt~n~~Ir~id~~~~~V~--tlag~----G~~g~~~~gg~~~~~~~ln~P~gVa~dp---~~g~LyVad~~~~~ 706 (1057)
T PLN02919 637 -LLYVADTENHALREIDFVNETVR--TLAGN----GTKGSDYQGGKKGTSQVLNSPWDVCFEP---VNEKVYIAMAGQHQ 706 (1057)
T ss_pred -EEEEEeCCCceEEEEecCCCEEE--EEecc----CcccCCCCCChhhhHhhcCCCeEEEEec---CCCeEEEEECCCCe
Confidence 33333 34688999987642200 00000 000000000 012346899998 554 5556667889
Q ss_pred EEEEEcCCCceEEEecc--------CC-----ceeEEEEeeecCCCCCc-EEEEEecCCeEEEEEeccCccccCCCCCCC
Q 001391 159 IRVWDISNSSIILEVHS--------PE-----RCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEG 224 (1088)
Q Consensus 159 V~iWd~~~~~~~~~~~~--------~~-----~~~~~s~~~~~~s~~~~-~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~ 224 (1088)
|++||..++....-... .. ......+++ ++++. ++++.+.++.|++||+.++.......
T Consensus 707 I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIav---spdG~~LYVADs~n~~Irv~D~~tg~~~~~~g---- 779 (1057)
T PLN02919 707 IWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISL---SPDLKELYIADSESSSIRALDLKTGGSRLLAG---- 779 (1057)
T ss_pred EEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEE---eCCCCEEEEEECCCCeEEEEECCCCcEEEEEe----
Confidence 99999987754321100 00 001122333 46666 55566677999999987332110000
Q ss_pred ccCCCCCC-CCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeec--
Q 001391 225 NHAHGSSS-DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS-- 301 (1088)
Q Consensus 225 ~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~-- 301 (1088)
+... .......... .+... ...-....+++++++|..+++-+.++.|++||..++.. ......
T Consensus 780 ----g~~~~~~~l~~fG~~--dG~g~---~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v-----~tiaG~G~ 845 (1057)
T PLN02919 780 ----GDPTFSDNLFKFGDH--DGVGS---EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRV-----TTLAGTGK 845 (1057)
T ss_pred ----cccccCcccccccCC--CCchh---hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeE-----EEEeccCC
Confidence 0000 0000000000 00000 00112346899999999999999999999999987543 010000
Q ss_pred ------eeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCC
Q 001391 302 ------SVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSD 336 (1088)
Q Consensus 302 ------~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~ 336 (1088)
....+.-.....++++ +.++++-+.++.|++||+.
T Consensus 846 ~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 846 AGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred cCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 0011122346677886 6778888889999999993
No 294
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.13 E-value=0.0045 Score=63.05 Aligned_cols=99 Identities=10% Similarity=-0.025 Sum_probs=70.1
Q ss_pred CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEcc
Q 001391 268 GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKE 345 (1088)
Q Consensus 268 g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~ 345 (1088)
..+++.+|..+.+.--|..+++. + -..--..+|-+-+.- +++++.|+..|.+++-+. +|.....+..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~--------~---We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~ 91 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNL--------I---WEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVI 91 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcE--------E---eehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeee
Confidence 34667788888888888877643 1 111122344443333 888999999999999999 7877777765
Q ss_pred cCCCCeE-EEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 346 HIGRGIW-RCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 346 h~~~~V~-~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
-.. |- +....+++.++..|+.|++....|...
T Consensus 92 ~~~--vk~~a~~d~~~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 92 LET--VKVRAQCDFDGGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred hhh--hccceEEcCCCceEEEecCCCcEEEecccc
Confidence 443 32 344678999999999999999988854
No 295
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.13 E-value=0.00046 Score=70.26 Aligned_cols=198 Identities=14% Similarity=0.065 Sum_probs=123.9
Q ss_pred EEEEEeccc--CCCCEEEEEEcCCcEEEEEcCCCceEEEec-cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEecc
Q 001391 136 FDVCFLKVC--NGNRSLAIGCSDNSIRVWDISNSSIILEVH-SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (1088)
Q Consensus 136 ~~v~f~p~~--~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~-~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~ 212 (1088)
..+.|-|.+ ....+||.||.-|...+|...+.+....+- .+.+.+...-.+ -....-+..++.|.++++.++.
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~---cd~~~~~~i~sndht~k~~~~~- 146 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRY---CDLKFPLNIASNDHTGKTMVVS- 146 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhh---cccccceeeccCCcceeEEEEe-
Confidence 345565522 133589999999999999998765433322 111111000000 0112245566788889988887
Q ss_pred CccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCC--EEEEEEcCCCCEEEEEECCCcEEEEEcCCCcc
Q 001391 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGS--IFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (1088)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~ 290 (1088)
.... .+.-|... +.++++++|++++++.++.+.|-+|.+.....
T Consensus 147 --------------------------------~~s~--~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se 192 (344)
T KOG4532|consen 147 --------------------------------GDSN--KFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE 192 (344)
T ss_pred --------------------------------cCcc--cceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccc
Confidence 1110 11123333 78899999999999999999999999987532
Q ss_pred cCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC--CCceeEE----EcccCCCCeEEEEEcCCCC-
Q 001391 291 KDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS--DGKQLKM----IKEHIGRGIWRCLYDSLSS- 361 (1088)
Q Consensus 291 ~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~--~~~~~~~----~~~h~~~~V~~l~~~~dg~- 361 (1088)
...+ ......+..=.+..|+ +..++++..||++.|||+ .+.+... -..|.| .+..+.|++.|.
T Consensus 193 ------y~~~-~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnG-a~R~c~Fsl~g~l 264 (344)
T KOG4532|consen 193 ------YIEN-IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNG-AFRVCRFSLYGLL 264 (344)
T ss_pred ------eeee-eEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCC-ceEEEEecCCCcc
Confidence 1121 1333334444567777 678999999999999999 3333222 233666 799999998664
Q ss_pred -EEEEEeCCCCEEEEEcCC
Q 001391 362 -LLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 362 -~l~tg~~Dg~I~iwd~~~ 379 (1088)
+|.-.-.-+.+.+-|++.
T Consensus 265 DLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 265 DLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred eEEEEecCcceEEEEEccc
Confidence 444444456788888754
No 296
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.11 E-value=7.6e-06 Score=59.73 Aligned_cols=38 Identities=32% Similarity=0.492 Sum_probs=35.9
Q ss_pred ceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEE
Q 001391 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWD 163 (1088)
Q Consensus 123 ~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd 163 (1088)
+++..+.+|.+.|++|+|+| ++.+|++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~---~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSP---DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEET---TSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEec---ccccceeeCCCCEEEEEC
Confidence 56788999999999999999 999999999999999997
No 297
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.11 E-value=3.9e-05 Score=79.07 Aligned_cols=241 Identities=14% Similarity=0.124 Sum_probs=141.1
Q ss_pred CCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc-----eEEEeccCCce-----------eEEEEeeecCCCCCcE
Q 001391 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-----IILEVHSPERC-----------LLYSMKLWGDNLEALR 195 (1088)
Q Consensus 132 ~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~-----~~~~~~~~~~~-----------~~~s~~~~~~s~~~~~ 195 (1088)
.+.|+++.|.. .|.+|++|...|.|.++.-+... ....+++++.. .+..+.++.. .....
T Consensus 26 ad~ItaVefd~---tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~-t~r~h 101 (460)
T COG5170 26 ADKITAVEFDE---TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDD-TGRNH 101 (460)
T ss_pred cceeeEEEecc---ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecC-CCcce
Confidence 47799999988 99999999888999999765432 12223333211 1122333322 23345
Q ss_pred EEEEecCCeEEEEEeccCccc--cCCC-CCCCccCCCCCC-CCceeEeccccccee-----eeE-EEeCCCCCEEEEEEc
Q 001391 196 IASGTIYNEIIVWKVDWEHVA--PLLN-SPEGNHAHGSSS-DFKCFKLQDQQHTAV-----NLF-RLVGHEGSIFRIEWS 265 (1088)
Q Consensus 196 l~sg~~dg~I~vwd~~~~~~~--~~~~-~~~~~s~~~~~~-~~~~~~~~~~~~~~~-----~~~-~~~gh~~~V~~v~~s 265 (1088)
+...+.|.+|++|.+....+. .+.. .....++-+... ....+.+........ +.+ ....|.-.|.++.|.
T Consensus 102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N 181 (460)
T COG5170 102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN 181 (460)
T ss_pred EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence 666678999999999844221 1111 111111111111 111122111111111 111 125788899999999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeecc-----CcceEEEEECC---CEEEEEeCCCcEEEEcCCC
Q 001391 266 SCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH-----NARVWDCCLTD---SFIITAGEDCTCRVWGSDG 337 (1088)
Q Consensus 266 p~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h-----~~~I~~v~~~~---~~l~sg~~Dg~i~vWd~~~ 337 (1088)
.|.+.++++ +|-.|.+|++..... .+......+| ..-|++..|++ .++.-.+..|.|++-|+..
T Consensus 182 sD~et~lSa-DdLrINLWnl~i~D~-------sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq 253 (460)
T COG5170 182 SDKETLLSA-DDLRINLWNLEIIDG-------SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQ 253 (460)
T ss_pred Cchheeeec-cceeeeeccccccCC-------ceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhh
Confidence 999988887 566799999876422 1111123333 34578888983 5777778899999999842
Q ss_pred c-----eeEEE------------cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC--CCCCccc
Q 001391 338 K-----QLKMI------------KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA--FLPGSLE 386 (1088)
Q Consensus 338 ~-----~~~~~------------~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~--~~~~~~~ 386 (1088)
. ....+ .+-. ..|..+.|+++|+++++-+. -++++||.+. .++.+..
T Consensus 254 ~alcdn~~klfe~~~D~v~~~ff~eiv-sSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~ 319 (460)
T COG5170 254 SALCDNSKKLFELTIDGVDVDFFEEIV-SSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIP 319 (460)
T ss_pred hhhccCchhhhhhccCcccchhHHHHh-hhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeec
Confidence 1 11111 1111 25788899999999887654 5899999843 4444443
No 298
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.09 E-value=0.00066 Score=70.53 Aligned_cols=203 Identities=13% Similarity=0.159 Sum_probs=115.5
Q ss_pred EEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeee------CCcceEEEEecccccccCCCccceeeEEEE
Q 001391 21 SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVF------HGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1088)
Q Consensus 21 ~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~------~~~~V~~i~~s~~~~~~~~d~~~~~~~la~ 93 (1088)
.-|+|| || +.+||.+. .|+|+|||+.. ..+..+... -...|.++.|.+... +.+.-..+++.
T Consensus 47 Rkl~WS--pD----~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~----s~~ws~ELlvi 115 (282)
T PF15492_consen 47 RKLAWS--PD----CTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKK----SAQWSYELLVI 115 (282)
T ss_pred eEEEEC--CC----CcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeecccc----ccccceeEEEE
Confidence 368999 99 88888888 59999999875 333333321 123588888864321 11111256677
Q ss_pred ECCCEEEEEEeccCCCCCCCCCCccccccceeeecc-CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEE
Q 001391 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP-RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1088)
Q Consensus 94 ~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~ 172 (1088)
.-+|.++=|-+..+. ...| .......+. .+...|.++.++| ..++|++||.... +.+.
T Consensus 116 ~Y~G~L~Sy~vs~gt--~q~y------~e~hsfsf~~~yp~Gi~~~vy~p---~h~LLlVgG~~~~------~~~~---- 174 (282)
T PF15492_consen 116 NYRGQLRSYLVSVGT--NQGY------QENHSFSFSSHYPHGINSAVYHP---KHRLLLVGGCEQN------QDGM---- 174 (282)
T ss_pred eccceeeeEEEEccc--CCcc------eeeEEEEecccCCCceeEEEEcC---CCCEEEEeccCCC------CCcc----
Confidence 677888777765322 1111 112222232 3468999999999 8888888875322 0000
Q ss_pred eccCCceeEEEEeeecCCCCCcEEEEEecCCe------EEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccce
Q 001391 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNE------IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (1088)
Q Consensus 173 ~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~------I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 246 (1088)
.....+.+.+-++....|....+.+ ..|+. -.+|.+- ..
T Consensus 175 -s~a~~~GLtaWRiL~~~Pyyk~v~~-~~~~~~~~~~~~~~~~~~---------------------------------~~ 219 (282)
T PF15492_consen 175 -SKASSCGLTAWRILSDSPYYKQVTS-SEDDITASSKRRGLLRIP---------------------------------SF 219 (282)
T ss_pred -ccccccCceEEEEcCCCCcEEEccc-cCccccccccccceeecc---------------------------------ce
Confidence 0011222333333333343333221 11111 1122211 11
Q ss_pred eeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcc
Q 001391 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (1088)
Q Consensus 247 ~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~ 290 (1088)
+.......-.+.|+.|..||||+.|++...+|.|.+|++..-+.
T Consensus 220 ~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 220 KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence 11111223467899999999999999999999999999988544
No 299
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.01 E-value=0.0053 Score=65.78 Aligned_cols=216 Identities=11% Similarity=0.064 Sum_probs=127.9
Q ss_pred CCeEEEEECCCCeeEEEEeeeCC-cceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccc
Q 001391 43 GSQVLLYDLEAGTLIRPFQVFHG-IRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVN 121 (1088)
Q Consensus 43 d~~I~vwd~~tg~~~~~~~~~~~-~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~ 121 (1088)
+++|..||..+|+.+.+...... .......+. .++ .+++..+++.+..||..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-------~~~----~v~~~~~~~~l~~~d~~tG~------------- 57 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-------DGG----RVYVASGDGNLYALDAKTGK------------- 57 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-------ETT----EEEEEETTSEEEEEETTTSE-------------
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE-------eCC----EEEEEcCCCEEEEEECCCCC-------------
Confidence 47899999999999998875221 111211221 232 66666789999999987543
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEe-ccCC---c-eeEEEEeeecCCCCCcEE
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV-HSPE---R-CLLYSMKLWGDNLEALRI 196 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~-~~~~---~-~~~~s~~~~~~s~~~~~l 196 (1088)
.+..... .+.+.... .. ++..++++..++.+..+|..+|+.+.+. .... . ....... ..+..+
T Consensus 58 --~~W~~~~-~~~~~~~~-~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-----~~~~~~ 125 (238)
T PF13360_consen 58 --VLWRFDL-PGPISGAP-VV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPA-----VDGDRL 125 (238)
T ss_dssp --EEEEEEC-SSCGGSGE-EE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEE-----EETTEE
T ss_pred --EEEEeec-ccccccee-ee---cccccccccceeeeEecccCCcceeeeeccccccccccccccCce-----EecCEE
Confidence 2222211 11111111 22 4556677778899999999999998874 3221 1 0111111 136678
Q ss_pred EEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCC----------EEEEEEcC
Q 001391 197 ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGS----------IFRIEWSS 266 (1088)
Q Consensus 197 ~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~----------V~~v~~sp 266 (1088)
+.+..++.|..+|+. +++.+.....+... +.+-....
T Consensus 126 ~~~~~~g~l~~~d~~---------------------------------tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (238)
T PF13360_consen 126 YVGTSSGKLVALDPK---------------------------------TGKLLWKYPVGEPRGSSPISSFSDINGSPVIS 172 (238)
T ss_dssp EEEETCSEEEEEETT---------------------------------TTEEEEEEESSTT-SS--EEEETTEEEEEECC
T ss_pred EEEeccCcEEEEecC---------------------------------CCcEEEEeecCCCCCCcceeeecccccceEEE
Confidence 888889999999998 55555555443311 12222223
Q ss_pred CCCEEEEEECCCc-EEEEEcCCCcccCCCCceeeeceeeeccCcceEE-EEECCCEEEEEeCCCcEEEEcC-CCceeE
Q 001391 267 CGSKLVSVSDDRS-ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD-CCLTDSFIITAGEDCTCRVWGS-DGKQLK 341 (1088)
Q Consensus 267 ~g~~l~s~s~Dg~-v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~-v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~ 341 (1088)
++ .+..++.++. +.+ |+.+++. +- ... ...+.. ....+..++.++.++.+..||+ +|+.+.
T Consensus 173 ~~-~v~~~~~~g~~~~~-d~~tg~~--------~w--~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 173 DG-RVYVSSGDGRVVAV-DLATGEK--------LW--SKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp TT-EEEEECCTSSEEEE-ETTTTEE--------EE--EEC--SS-ECECEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred CC-EEEEEcCCCeEEEE-ECCCCCE--------EE--Eec--CCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 44 6777777775 555 9888642 11 111 122333 4445788888889999999999 777654
No 300
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.99 E-value=0.0031 Score=73.26 Aligned_cols=262 Identities=10% Similarity=0.039 Sum_probs=144.4
Q ss_pred EEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCC
Q 001391 37 FLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQ 115 (1088)
Q Consensus 37 ~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~ 115 (1088)
.|.++. ++.|.-+|.++|+++.+..... .+.+ +|. ..++ .+++..+++.+.-+|.+++.
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~--~~~s---sP~----v~~~----~v~v~~~~g~l~ald~~tG~------- 181 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTKVAG--EALS---RPV----VSDG----LVLVHTSNGMLQALNESDGA------- 181 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCcccccCCC--ceec---CCE----EECC----EEEEECCCCEEEEEEccCCC-------
Confidence 444554 7999999999999988877532 1221 111 0233 56666678888888887543
Q ss_pred CccccccceeeeccCCCCcEE-EEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEecc--CCcee----EEEEeeec
Q 001391 116 PETCVNLSLVQSLPRLSHWVF-DVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS--PERCL----LYSMKLWG 188 (1088)
Q Consensus 116 ~~~~~~~~~~~~l~~h~~~I~-~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~--~~~~~----~~s~~~~~ 188 (1088)
.+-.+......+. ...-+|.- .+..++.++.++.+...|..+++.+.+... +.... .......
T Consensus 182 --------~~W~~~~~~~~~~~~~~~sP~v-~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~s- 251 (394)
T PRK11138 182 --------VKWTVNLDVPSLTLRGESAPAT-AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTT- 251 (394)
T ss_pred --------EeeeecCCCCcccccCCCCCEE-ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCC-
Confidence 1111111000000 00011110 223466677899999999998877654331 11000 0000000
Q ss_pred CCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCC
Q 001391 189 DNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG 268 (1088)
Q Consensus 189 ~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g 268 (1088)
.-..+..++.++.+|.+...|.. +++.+....- +....+ ...+
T Consensus 252 P~v~~~~vy~~~~~g~l~ald~~---------------------------------tG~~~W~~~~--~~~~~~--~~~~ 294 (394)
T PRK11138 252 PVVVGGVVYALAYNGNLVALDLR---------------------------------SGQIVWKREY--GSVNDF--AVDG 294 (394)
T ss_pred cEEECCEEEEEEcCCeEEEEECC---------------------------------CCCEEEeecC--CCccCc--EEEC
Confidence 00124466677788999999987 2322222110 111111 1245
Q ss_pred CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEEcccC
Q 001391 269 SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347 (1088)
Q Consensus 269 ~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~ 347 (1088)
..+..++.++.+...|..+++. +-......+ ....+....+..|+.++.||.+.+.|. +|+.+...+...
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~--------~W~~~~~~~-~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~ 365 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVE--------LWSQSDLLH-RLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDS 365 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcE--------EEcccccCC-CcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC
Confidence 6777788899999999887632 110011111 112223334788899999999999999 888887765443
Q ss_pred CCCeEE-EEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 348 GRGIWR-CLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 348 ~~~V~~-l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
. .+.+ ..+ .+..|+.++.||.+..+++
T Consensus 366 ~-~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 366 S-GFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred C-cceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 3 2432 222 2346888899998887754
No 301
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.98 E-value=0.00055 Score=79.60 Aligned_cols=106 Identities=13% Similarity=0.187 Sum_probs=75.6
Q ss_pred EEEeccCCCCCCCCEEEEEe-----CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-ECC
Q 001391 23 LCFVHLPSHLSSLPFLLAGS-----GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGE 96 (1088)
Q Consensus 23 v~fs~~pd~~~~~~~laag~-----d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd 96 (1088)
..|+ |. ..++|+++ +|.|.||- .+|++-+-..- ...+.+++|+ |.. .+|+. ++-
T Consensus 21 ~SWH--Ps----ePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~--P~hatSLCWH-------pe~----~vLa~gwe~ 80 (1416)
T KOG3617|consen 21 SSWH--PS----EPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY--PVHATSLCWH-------PEE----FVLAQGWEM 80 (1416)
T ss_pred cccC--CC----CceeEEEEecCCCCceEEEEe-cCCCCCccccc--ceehhhhccC-------hHH----HHHhhcccc
Confidence 4566 66 67777765 48899986 66765433321 1235678998 542 44444 457
Q ss_pred CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC
Q 001391 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (1088)
Q Consensus 97 ~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~ 166 (1088)
+.+.+|.-... +.......|+..|..+.|+| +|..|+|+..-|.|.+|....
T Consensus 81 g~~~v~~~~~~---------------e~htv~~th~a~i~~l~wS~---~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 81 GVSDVQKTNTT---------------ETHTVVETHPAPIQGLDWSH---DGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ceeEEEecCCc---------------eeeeeccCCCCCceeEEecC---CCCeEEEcCCCceeEEEEeee
Confidence 89999987742 23334457999999999999 999999999999999998863
No 302
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.95 E-value=2.6e-05 Score=81.83 Aligned_cols=165 Identities=16% Similarity=0.171 Sum_probs=113.1
Q ss_pred EEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCC
Q 001391 151 AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGS 230 (1088)
Q Consensus 151 asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~ 230 (1088)
++.|.+..|-+-|++++....-. ..+-+++..|+ ..+.++..|...|.|...|+++...
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~---sksDVfAlQf~---~s~nLv~~GcRngeI~~iDLR~rnq--------------- 286 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQ---SKSDVFALQFA---GSDNLVFNGCRNGEIFVIDLRCRNQ--------------- 286 (425)
T ss_pred ecccccceeEEEEeecccccccc---cchhHHHHHhc---ccCCeeEecccCCcEEEEEeeeccc---------------
Confidence 44556777888888887433211 22334444442 3467999999999999999983210
Q ss_pred CCCCceeEecccccceeeeEEEeCCCCCEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCc
Q 001391 231 SSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA 309 (1088)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp-~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~ 309 (1088)
..+.+.+.+. |...|+++.... ++++|++.+.+|.|++||.+.-++ ...+. ...||-.
T Consensus 287 -------------G~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~-----~~~V~--qYeGHvN 345 (425)
T KOG2695|consen 287 -------------GNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC-----KKSVM--QYEGHVN 345 (425)
T ss_pred -------------CCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhc-----cccee--eeecccc
Confidence 1233444443 889999998877 889999999999999999987544 22343 7778865
Q ss_pred ceEEEEEC----CCEEEEEeCCCcEEEEcC-CCceeEEEcccCC---CCeEEEEEc
Q 001391 310 RVWDCCLT----DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIG---RGIWRCLYD 357 (1088)
Q Consensus 310 ~I~~v~~~----~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~---~~V~~l~~~ 357 (1088)
.-.-+-++ ...+++++.|+..|+|.+ .|..+.++..... .-++++++.
T Consensus 346 ~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 346 LSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred cccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 44444443 578999999999999999 7888877654321 125566653
No 303
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.91 E-value=0.0026 Score=68.14 Aligned_cols=209 Identities=13% Similarity=0.088 Sum_probs=125.2
Q ss_pred CCCCceEEecCCCcee---------eeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEE
Q 001391 2 GKKDLSEWRLDVGQYL---------GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGI 71 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~~~---------~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i 71 (1088)
.+|+|..||..+|+.. +...+..+ ++ +..+++++ ++.|..||..+|+.+.++..... +...
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~---~~----~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~--~~~~ 71 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAV---PD----GGRVYVASGDGNLYALDAKTGKVLWRFDLPGP--ISGA 71 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEE---EE----TTEEEEEETTSEEEEEETTTSEEEEEEECSSC--GGSG
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEE---Ee----CCEEEEEcCCCEEEEEECCCCCEEEEeecccc--ccce
Confidence 3688999999999821 11111123 22 45666664 79999999999999998886332 2222
Q ss_pred EecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeee-ccCC---CCcEEEEEEecccCCC
Q 001391 72 SCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQS-LPRL---SHWVFDVCFLKVCNGN 147 (1088)
Q Consensus 72 ~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~-l~~h---~~~I~~v~f~p~~~d~ 147 (1088)
... .++ .+++...++.+..+|..++. .+.. .... ..-........ ++
T Consensus 72 ~~~-------~~~----~v~v~~~~~~l~~~d~~tG~---------------~~W~~~~~~~~~~~~~~~~~~~~---~~ 122 (238)
T PF13360_consen 72 PVV-------DGG----RVYVGTSDGSLYALDAKTGK---------------VLWSIYLTSSPPAGVRSSSSPAV---DG 122 (238)
T ss_dssp EEE-------ETT----EEEEEETTSEEEEEETTTSC---------------EEEEEEE-SSCTCSTB--SEEEE---ET
T ss_pred eee-------ccc----ccccccceeeeEecccCCcc---------------eeeeeccccccccccccccCceE---ec
Confidence 121 233 66777788889999877543 2222 1111 01122233333 56
Q ss_pred CEEEEEEcCCcEEEEEcCCCceEEEeccCCce---e-------EEEEeeecCCCCCcEEEEEecCCeEEEEEeccCcccc
Q 001391 148 RSLAIGCSDNSIRVWDISNSSIILEVHSPERC---L-------LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217 (1088)
Q Consensus 148 ~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~---~-------~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~ 217 (1088)
..++.+..++.|..+|..+|+.+......... . ...+.+ .++ .++.++.++.+..+|..
T Consensus 123 ~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~v~~~~~~g~~~~~d~~------ 191 (238)
T PF13360_consen 123 DRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI----SDG-RVYVSSGDGRVVAVDLA------ 191 (238)
T ss_dssp TEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC----CTT-EEEEECCTSSEEEEETT------
T ss_pred CEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE----ECC-EEEEEcCCCeEEEEECC------
Confidence 77888888999999999999998776543311 0 111211 234 66667777753333887
Q ss_pred CCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 001391 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (1088)
Q Consensus 218 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~ 289 (1088)
+++.+.... ...+..+ ..+++..++.++.++.+..||+.+++
T Consensus 192 ---------------------------tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 192 ---------------------------TGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp ---------------------------TTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTE
T ss_pred ---------------------------CCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 444333222 2222221 34677888888899999999999974
No 304
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.87 E-value=1e-05 Score=93.65 Aligned_cols=193 Identities=13% Similarity=0.155 Sum_probs=135.3
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
+....+|++|+ -+ .+.|+.|. .|.|++|++.+|.......+|.. .|.-+..+ .||. ..|.++
T Consensus 1100 ~~~~fTc~afs--~~----~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~S-avT~vePs-------~dgs---~~Ltss 1162 (1516)
T KOG1832|consen 1100 ETALFTCIAFS--GG----TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQS-AVTLVEPS-------VDGS---TQLTSS 1162 (1516)
T ss_pred cccceeeEEee--cC----CceEEeeeccceEEEEEccCcccccccccccc-cccccccc-------CCcc---eeeeec
Confidence 34678999999 55 89999999 79999999999999999999777 69999888 6763 555554
Q ss_pred C--CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEE
Q 001391 95 G--EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1088)
Q Consensus 95 g--d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~ 172 (1088)
. .--..+|++... +...+++. .-.++.|+. ..+.-+.|.......+||++++..+.+
T Consensus 1163 s~S~PlsaLW~~~s~--------------~~~~Hsf~----ed~~vkFsn---~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1163 SSSSPLSALWDASST--------------GGPRHSFD----EDKAVKFSN---SLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred cccCchHHHhccccc--------------cCcccccc----ccceeehhh---hHHHHHhcccccceEEEecccCcHHHH
Confidence 4 346889998742 23333333 345788876 444344455556789999999988877
Q ss_pred eccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE
Q 001391 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1088)
Q Consensus 173 ~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1088)
+..+.....|+-.+..++|...+|.-- | .+||++ ....+++|
T Consensus 1222 ylt~~~~~~y~~n~a~FsP~D~LIlnd---G--vLWDvR---------------------------------~~~aIh~F 1263 (1516)
T KOG1832|consen 1222 YLTDTVTSSYSNNLAHFSPCDTLILND---G--VLWDVR---------------------------------IPEAIHRF 1263 (1516)
T ss_pred hcCcchhhhhhccccccCCCcceEeeC---c--eeeeec---------------------------------cHHHHhhh
Confidence 655554455555556678888777643 3 689998 34555555
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcc
Q 001391 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (1088)
Q Consensus 253 ~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~ 290 (1088)
...+..+. =.|+|.|..++.-++ |||+++-+.
T Consensus 1264 D~ft~~~~-G~FHP~g~eVIINSE-----IwD~RTF~l 1295 (1516)
T KOG1832|consen 1264 DQFTDYGG-GGFHPSGNEVIINSE-----IWDMRTFKL 1295 (1516)
T ss_pred hhheeccc-ccccCCCceEEeech-----hhhhHHHHH
Confidence 44332222 258999988887654 799988543
No 305
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.82 E-value=0.00034 Score=82.33 Aligned_cols=179 Identities=11% Similarity=0.152 Sum_probs=130.2
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCc
Q 001391 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (1088)
Q Consensus 146 d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~ 225 (1088)
++..+..|+-...+..+|+.+.+........... +.-++ .++..+.+|...|+|.+-|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~-v~imR-----~Nnr~lf~G~t~G~V~LrD~~-------------- 205 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG-VTIMR-----YNNRNLFCGDTRGTVFLRDPN-------------- 205 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCc-eEEEE-----ecCcEEEeecccceEEeecCC--------------
Confidence 3456777888888899999888776665533322 33444 367899999999999999998
Q ss_pred cCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC---------CCcEEEEEcCCCcccCCCCc
Q 001391 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD---------DRSARIWEVRAEYWKDSDSI 296 (1088)
Q Consensus 226 s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~---------Dg~v~iWd~~~~~~~~~~~~ 296 (1088)
+.+.++++..|.+.|..+.. .|..|++|+. |.-|++||++..+. .
T Consensus 206 -------------------s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra-----l 259 (1118)
T KOG1275|consen 206 -------------------SFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA-----L 259 (1118)
T ss_pred -------------------cCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhc-----c
Confidence 78899999999999987655 6889999875 66789999998654 2
Q ss_pred eeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcC---CCceeEE--EcccCCCCeEEEEEcCCCCEEEEEeC
Q 001391 297 EEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS---DGKQLKM--IKEHIGRGIWRCLYDSLSSLLVTAGF 368 (1088)
Q Consensus 297 ~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~---~~~~~~~--~~~h~~~~V~~l~~~~dg~~l~tg~~ 368 (1088)
.++. ...+ ..-+.|+ ...++.++..|...+-|. ..-+... +..... .+..++++++++.++.|..
T Consensus 260 ~PI~--~~~~----P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s-~i~~fDiSsn~~alafgd~ 332 (1118)
T KOG1275|consen 260 SPIQ--FPYG----PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGS-GISAFDISSNGDALAFGDH 332 (1118)
T ss_pred CCcc--cccC----chhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCC-cceeEEecCCCceEEEecc
Confidence 2222 1111 1234444 467888899999999884 2222333 222222 4999999999999999999
Q ss_pred CCCEEEEEc
Q 001391 369 DSAIKVHQF 377 (1088)
Q Consensus 369 Dg~I~iwd~ 377 (1088)
+|.|.+|.-
T Consensus 333 ~g~v~~wa~ 341 (1118)
T KOG1275|consen 333 EGHVNLWAD 341 (1118)
T ss_pred cCcEeeecC
Confidence 999999974
No 306
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.81 E-value=0.0066 Score=65.28 Aligned_cols=208 Identities=13% Similarity=0.067 Sum_probs=126.2
Q ss_pred CcEEEEEEecccCCCCEEEEEEcCCc-EEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEe-----cCCeEE
Q 001391 133 HWVFDVCFLKVCNGNRSLAIGCSDNS-IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT-----IYNEII 206 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasgs~Dg~-V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~-----~dg~I~ 206 (1088)
.+-..++.+| .....++.+-.-|+ ..+||..+++....+..+..-..|.-.. +++||.+|++.- ..|.|-
T Consensus 5 ~RgH~~a~~p--~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~--fs~dG~~LytTEnd~~~g~G~Ig 80 (305)
T PF07433_consen 5 ARGHGVAAHP--TRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGV--FSPDGRLLYTTENDYETGRGVIG 80 (305)
T ss_pred ccccceeeCC--CCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEE--EcCCCCEEEEeccccCCCcEEEE
Confidence 3445678888 23456677766665 6789999999998888776655554332 268999998854 358899
Q ss_pred EEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC-------CCc
Q 001391 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-------DRS 279 (1088)
Q Consensus 207 vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~-------Dg~ 279 (1088)
|||.. ...+.+.++..|.-....+.+.|||+.|+.+-. .|.
T Consensus 81 Vyd~~--------------------------------~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR 128 (305)
T PF07433_consen 81 VYDAA--------------------------------RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGR 128 (305)
T ss_pred EEECc--------------------------------CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCc
Confidence 99987 146677888888877888999999988776532 122
Q ss_pred EEEEEcCCCccc----CCCCceeeeceee--eccCcceEEEEEC-CCEEEEEeCC-C-------cEEEEcCCCceeEEEc
Q 001391 280 ARIWEVRAEYWK----DSDSIEEVGSSVL--YGHNARVWDCCLT-DSFIITAGED-C-------TCRVWGSDGKQLKMIK 344 (1088)
Q Consensus 280 v~iWd~~~~~~~----~~~~~~~i~~~~~--~~h~~~I~~v~~~-~~~l~sg~~D-g-------~i~vWd~~~~~~~~~~ 344 (1088)
.++ |+.+.+.. ...+.+.+....+ .-|...|..+++. ...++.|... | .+.+++.. +.+..+.
T Consensus 129 ~kL-Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g-~~~~~~~ 206 (305)
T PF07433_consen 129 AKL-NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG-GALRLLP 206 (305)
T ss_pred eec-ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC-Ccceecc
Confidence 222 22211110 0111233332234 3366678777776 3333333321 1 13333321 1122221
Q ss_pred -------ccCCCCeEEEEEcCCCCEE-EEEeCCCCEEEEEcCC
Q 001391 345 -------EHIGRGIWRCLYDSLSSLL-VTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 345 -------~h~~~~V~~l~~~~dg~~l-~tg~~Dg~I~iwd~~~ 379 (1088)
...+ .|-+|++++++.++ +|+-.-+.+.+||..+
T Consensus 207 ~p~~~~~~l~~-Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t 248 (305)
T PF07433_consen 207 APEEQWRRLNG-YIGSIAADRDGRLIAVTSPRGGRVAVWDAAT 248 (305)
T ss_pred CChHHHHhhCC-ceEEEEEeCCCCEEEEECCCCCEEEEEECCC
Confidence 1223 48899999999866 5555788999999854
No 307
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.76 E-value=0.0031 Score=72.94 Aligned_cols=211 Identities=12% Similarity=0.140 Sum_probs=120.8
Q ss_pred CCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEe
Q 001391 131 LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV 210 (1088)
Q Consensus 131 h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~ 210 (1088)
|...|.--++.. .+++++.|+.-|.+.+|+-..++....-............+ +++..++|+|+..|.|.++-+
T Consensus 32 ~~~~v~lTc~ds---t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~v---s~~e~lvAagt~~g~V~v~ql 105 (726)
T KOG3621|consen 32 FPARVKLTCVDA---TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSV---SSVEYLVAAGTASGRVSVFQL 105 (726)
T ss_pred CcceEEEEEeec---CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEe---cchhHhhhhhcCCceEEeehh
Confidence 334454445555 88999999999999999987765543322222222222333 567789999999999999988
Q ss_pred ccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE-eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 001391 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (1088)
Q Consensus 211 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~ 289 (1088)
.. +..+ ....+..+ +.|...|++++|++++..+.+|...|.|.+-.++...
T Consensus 106 ~~-~~p~---------------------------~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~ 157 (726)
T KOG3621|consen 106 NK-ELPR---------------------------DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQ 157 (726)
T ss_pred hc-cCCC---------------------------cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhh
Confidence 72 1111 11111111 2378999999999999999999999999998887731
Q ss_pred ccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcCCCceeEEEcccCCCC--eEEEEEcCC----C-CE
Q 001391 290 WKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRG--IWRCLYDSL----S-SL 362 (1088)
Q Consensus 290 ~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~--V~~l~~~~d----g-~~ 362 (1088)
. -......+..-...|.-+.+...+|+.+.--. ..+++.+.+.++++.....++ -...+|-|. . .+
T Consensus 158 ~------~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r-~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~ 230 (726)
T KOG3621|consen 158 A------FLSKSQEILSEDSEIVQLDYLQSYLLVSTLTR-CILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQ 230 (726)
T ss_pred h------hccccceeeccCcceEEeecccceehHhhhhh-hheeecchhHHHHhcCCCcCCccccceEEeeccccCCCce
Confidence 1 00110133444566777777655554444332 234455333233332111111 234455443 2 24
Q ss_pred EEEEeCCCCEEEEEc--CCCCCCc
Q 001391 363 LVTAGFDSAIKVHQF--QAFLPGS 384 (1088)
Q Consensus 363 l~tg~~Dg~I~iwd~--~~~~~~~ 384 (1088)
|+++ +-| .|+|.. .+..+++
T Consensus 231 Iyca-RPG-~RlWead~~G~V~~T 252 (726)
T KOG3621|consen 231 IYCA-RPG-LRLWEADFAGEVIKT 252 (726)
T ss_pred EEEe-cCC-CceEEeecceeEEEe
Confidence 4444 433 577765 4444433
No 308
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.73 E-value=0.062 Score=57.86 Aligned_cols=211 Identities=13% Similarity=0.035 Sum_probs=121.6
Q ss_pred eEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEe-cccCCCCEEEEEEcCCcEEEEEcCC
Q 001391 89 FEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFL-KVCNGNRSLAIGCSDNSIRVWDISN 166 (1088)
Q Consensus 89 ~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~-p~~~d~~~lasgs~Dg~V~iWd~~~ 166 (1088)
.++.+- ..+.|..|+..... .....+.+ ...+++. + ++. |+.+..+ .+.++|..+
T Consensus 13 ~l~~~D~~~~~i~~~~~~~~~--------------~~~~~~~~----~~G~~~~~~---~g~-l~v~~~~-~~~~~d~~~ 69 (246)
T PF08450_consen 13 RLYWVDIPGGRIYRVDPDTGE--------------VEVIDLPG----PNGMAFDRP---DGR-LYVADSG-GIAVVDPDT 69 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTE--------------EEEEESSS----EEEEEEECT---TSE-EEEEETT-CEEEEETTT
T ss_pred EEEEEEcCCCEEEEEECCCCe--------------EEEEecCC----CceEEEEcc---CCE-EEEEEcC-ceEEEecCC
Confidence 444444 37888888877432 11122222 7788888 5 544 5555544 456669988
Q ss_pred CceEEEecc---C-CceeEEEEeeecCCCCCcEEEEEecC--------CeEEEEEeccCccccCCCCCCCccCCCCCCCC
Q 001391 167 SSIILEVHS---P-ERCLLYSMKLWGDNLEALRIASGTIY--------NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF 234 (1088)
Q Consensus 167 ~~~~~~~~~---~-~~~~~~s~~~~~~s~~~~~l~sg~~d--------g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~ 234 (1088)
++....... . .......+++ +++|.+.++.... |.|..++..
T Consensus 70 g~~~~~~~~~~~~~~~~~~ND~~v---d~~G~ly~t~~~~~~~~~~~~g~v~~~~~~----------------------- 123 (246)
T PF08450_consen 70 GKVTVLADLPDGGVPFNRPNDVAV---DPDGNLYVTDSGGGGASGIDPGSVYRIDPD----------------------- 123 (246)
T ss_dssp TEEEEEEEEETTCSCTEEEEEEEE----TTS-EEEEEECCBCTTCGGSEEEEEEETT-----------------------
T ss_pred CcEEEEeeccCCCcccCCCceEEE---cCCCCEEEEecCCCccccccccceEEECCC-----------------------
Confidence 865433332 1 2333444444 5667655554332 334444432
Q ss_pred ceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEE-EEECCCcEEEEEcCCCcccCCCCceeeece-eeeccCcceE
Q 001391 235 KCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLV-SVSDDRSARIWEVRAEYWKDSDSIEEVGSS-VLYGHNARVW 312 (1088)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~-s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~-~~~~h~~~I~ 312 (1088)
++ +..+...-...+.|+|+|+++.|+ +-+..+.|..+++...... ......+ .+..-....-
T Consensus 124 -----------~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~g~pD 187 (246)
T PF08450_consen 124 -----------GK-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE----LSNRRVFIDFPGGPGYPD 187 (246)
T ss_dssp -----------SE-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC----EEEEEEEEE-SSSSCEEE
T ss_pred -----------Ce-EEEEecCcccccceEECCcchheeecccccceeEEEeccccccc----eeeeeeEEEcCCCCcCCC
Confidence 11 222223345678999999998765 6677888888888643210 0111100 1222223477
Q ss_pred EEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEc-CCCCEEEE
Q 001391 313 DCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYD-SLSSLLVT 365 (1088)
Q Consensus 313 ~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~-~dg~~l~t 365 (1088)
.+++. +++.++....+.|.+++.+|+.+..+..... .+++++|. ++.+.|+.
T Consensus 188 G~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~-~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 188 GLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPVP-RPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp EEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SSS-SEEEEEEESTTSSEEEE
T ss_pred cceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCCC-CEEEEEEECCCCCEEEE
Confidence 78887 6677777788999999999999988876644 59999994 66554443
No 309
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.00048 Score=74.94 Aligned_cols=238 Identities=15% Similarity=0.098 Sum_probs=155.0
Q ss_pred eEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc-CCcEEEEEcCCC
Q 001391 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNS 167 (1088)
Q Consensus 89 ~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~-Dg~V~iWd~~~~ 167 (1088)
..+.++-|+.++.|.-..-. -.+.+..+..|...|.+++.+- ++.++.|++. |..++++|+++-
T Consensus 22 fiiqASlDGh~KFWkKs~is------------GvEfVKhFraHL~~I~sl~~S~---dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 22 FIIQASLDGHKKFWKKSRIS------------GVEFVKHFRAHLGVILSLAVSY---DGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred eEEeeecchhhhhcCCCCcc------------ceeehhhhHHHHHHHHhhhccc---cceeEeeccCcccceeEEEeecc
Confidence 66666779999999866311 1567788889999999999998 9999999777 999999999876
Q ss_pred ceEEEecc---CCc-eeEEEEeeecCCCCC-cEEEE-EecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecc
Q 001391 168 SIILEVHS---PER-CLLYSMKLWGDNLEA-LRIAS-GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1088)
Q Consensus 168 ~~~~~~~~---~~~-~~~~s~~~~~~s~~~-~~l~s-g~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 241 (1088)
..+..++. |.. +..++ ..+. ..|+. .-.++.|.++|-..
T Consensus 87 DminmiKL~~lPg~a~wv~s------kGd~~s~IAVs~~~sg~i~VvD~~~----------------------------- 131 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTS------KGDKISLIAVSLFKSGKIFVVDGFG----------------------------- 131 (558)
T ss_pred chhhhcccccCCCceEEecC------CCCeeeeEEeecccCCCcEEECCcC-----------------------------
Confidence 65533331 111 11111 1111 23333 34568888988760
Q ss_pred cccce-eeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCC-cccCC-CCc---eeeeceeeeccCcceEEEE
Q 001391 242 QQHTA-VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE-YWKDS-DSI---EEVGSSVLYGHNARVWDCC 315 (1088)
Q Consensus 242 ~~~~~-~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~-~~~~~-~~~---~~i~~~~~~~h~~~I~~v~ 315 (1088)
.. +....-.-|..+|..+.+.|-+..++|....|.|.-|..... +.... ... .....+..........++.
T Consensus 132 ---d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~E 208 (558)
T KOG0882|consen 132 ---DFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFE 208 (558)
T ss_pred ---CcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceE
Confidence 22 233333469999999999999999999999999999998741 11000 000 0000011222334567888
Q ss_pred EC--CCEEEEEeCCCcEEEEcC-CCceeEEEc--------------------------------ccCCCCeEEEEEcCCC
Q 001391 316 LT--DSFIITAGEDCTCRVWGS-DGKQLKMIK--------------------------------EHIGRGIWRCLYDSLS 360 (1088)
Q Consensus 316 ~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~--------------------------------~h~~~~V~~l~~~~dg 360 (1088)
|+ +..+.+-+.|..||++.. +|+.++.+. .|....-+.+.|...+
T Consensus 209 fsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~ 288 (558)
T KOG0882|consen 209 FSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESG 288 (558)
T ss_pred EccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCC
Confidence 87 678888899999999998 554333221 1222233466788888
Q ss_pred CEEEEEeCCCCEEEEEcCCC
Q 001391 361 SLLVTAGFDSAIKVHQFQAF 380 (1088)
Q Consensus 361 ~~l~tg~~Dg~I~iwd~~~~ 380 (1088)
++|+-|+-=| |++.++.+.
T Consensus 289 ~flly~t~~g-ikvin~~tn 307 (558)
T KOG0882|consen 289 NFLLYGTILG-IKVINLDTN 307 (558)
T ss_pred CEEEeeccee-EEEEEeecC
Confidence 8888777655 788888543
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.64 E-value=0.028 Score=60.59 Aligned_cols=207 Identities=10% Similarity=0.131 Sum_probs=120.5
Q ss_pred eEEEEEeccCCCCCCCCEEEEEe--CCeEEEEECCCCeeEEEEeeeCCcceE--EEEecccccccCCCccceeeEEEEEC
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLH--GISCNFINCTEGSVSTRVTFEVALFG 95 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~--d~~I~vwd~~tg~~~~~~~~~~~~~V~--~i~~s~~~~~~~~d~~~~~~~la~~g 95 (1088)
..+++.+ |+ ....++.+- +....+||+.+|+.+..+....+ +-+ .-.|| +||+ .++++-.
T Consensus 7 gH~~a~~--p~---~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~g-RHFyGHg~fs-------~dG~---~LytTEn 70 (305)
T PF07433_consen 7 GHGVAAH--PT---RPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPG-RHFYGHGVFS-------PDGR---LLYTTEN 70 (305)
T ss_pred ccceeeC--CC---CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCC-CEEecCEEEc-------CCCC---EEEEecc
Confidence 4567788 85 245555565 57999999999999988876443 221 34678 8883 4444422
Q ss_pred -----CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc---------------
Q 001391 96 -----EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS--------------- 155 (1088)
Q Consensus 96 -----d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~--------------- 155 (1088)
.+.|-|||... . .+.+..+..|-=.-..+.+.| |++.|+++-.
T Consensus 71 d~~~g~G~IgVyd~~~-~-------------~~ri~E~~s~GIGPHel~l~p---DG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 71 DYETGRGVIGVYDAAR-G-------------YRRIGEFPSHGIGPHELLLMP---DGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred ccCCCcEEEEEEECcC-C-------------cEEEeEecCCCcChhhEEEcC---CCCEEEEEcCCCccCcccCceecCh
Confidence 47899999983 2 567777777776677888999 9987777521
Q ss_pred ---CCcEEEEEcCCCceEEEeccCCce---eEEEEeeecCCCCCcEEEEEecCCe-------EEEEEeccCccccCCCCC
Q 001391 156 ---DNSIRVWDISNSSIILEVHSPERC---LLYSMKLWGDNLEALRIASGTIYNE-------IIVWKVDWEHVAPLLNSP 222 (1088)
Q Consensus 156 ---Dg~V~iWd~~~~~~~~~~~~~~~~---~~~s~~~~~~s~~~~~l~sg~~dg~-------I~vwd~~~~~~~~~~~~~ 222 (1088)
+..+.+-|..+|+.+.+...+..- .+-.+++ ..++..++..-..|. |-+++..
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~---~~~G~V~~a~Q~qg~~~~~~PLva~~~~g----------- 199 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAV---DGDGTVAFAMQYQGDPGDAPPLVALHRRG----------- 199 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEe---cCCCcEEEEEecCCCCCccCCeEEEEcCC-----------
Confidence 224555666777766654432211 1222222 233333332211111 1111110
Q ss_pred CCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEE-EEEECCCcEEEEEcCCCcc
Q 001391 223 EGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL-VSVSDDRSARIWEVRAEYW 290 (1088)
Q Consensus 223 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l-~s~s~Dg~v~iWd~~~~~~ 290 (1088)
..++..... ... ...-.+-|-+|++++++..+ +|+-.-+.+.+||..+++.
T Consensus 200 ------------~~~~~~~~p--~~~---~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~ 251 (305)
T PF07433_consen 200 ------------GALRLLPAP--EEQ---WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRL 251 (305)
T ss_pred ------------CcceeccCC--hHH---HHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCE
Confidence 001110000 000 11234678899999999877 5555678999999999754
No 311
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.63 E-value=0.00016 Score=76.13 Aligned_cols=145 Identities=13% Similarity=0.149 Sum_probs=100.6
Q ss_pred CCCceEEecCCCc-----eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC-----eeEEEEeeeCCcceEEE
Q 001391 3 KKDLSEWRLDVGQ-----YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG-----TLIRPFQVFHGIRLHGI 71 (1088)
Q Consensus 3 d~~i~iWdl~~g~-----~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg-----~~~~~~~~~~~~~V~~i 71 (1088)
+..|-+=|+++|+ -.++|.++.|. - ++.+|.+|. .|.|.++|+..+ .+.+.+ .++..|.++
T Consensus 233 sqqv~L~nvetg~~qsf~sksDVfAlQf~--~----s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl--yh~Ssvtsl 304 (425)
T KOG2695|consen 233 SQQVLLTNVETGHQQSFQSKSDVFALQFA--G----SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL--YHDSSVTSL 304 (425)
T ss_pred cceeEEEEeecccccccccchhHHHHHhc--c----cCCeeEecccCCcEEEEEeeecccCCCcceEEE--EcCcchhhh
Confidence 4446677888887 24789999998 4 379999999 799999999764 233333 234468888
Q ss_pred EecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEE
Q 001391 72 SCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1088)
Q Consensus 72 ~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la 151 (1088)
+.... +++ .++++.-++.|++||+..-. ..+-+..+.||-..-.-+-++- ++....++
T Consensus 305 q~Lq~------s~q---~LmaS~M~gkikLyD~R~~K------------~~~~V~qYeGHvN~~a~l~~~v-~~eeg~I~ 362 (425)
T KOG2695|consen 305 QILQF------SQQ---KLMASDMTGKIKLYDLRATK------------CKKSVMQYEGHVNLSAYLPAHV-KEEEGSIF 362 (425)
T ss_pred hhhcc------ccc---eEeeccCcCceeEeeehhhh------------cccceeeeeccccccccccccc-ccccceEE
Confidence 87631 331 44444559999999998422 1334788888865433333332 11556788
Q ss_pred EEEcCCcEEEEEcCCCceEEEeccCC
Q 001391 152 IGCSDNSIRVWDISNSSIILEVHSPE 177 (1088)
Q Consensus 152 sgs~Dg~V~iWd~~~~~~~~~~~~~~ 177 (1088)
++|.|...|||.+..+..+.++..+.
T Consensus 363 s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 363 SVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred EccCeeEEEEEecccCceeeccCCCC
Confidence 89999999999999999988876543
No 312
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.61 E-value=0.11 Score=53.26 Aligned_cols=105 Identities=14% Similarity=0.068 Sum_probs=73.8
Q ss_pred CCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCcc
Q 001391 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (1088)
Q Consensus 147 ~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s 226 (1088)
..+++.|+-.+.+.--|..+|....+.....+-....+. -++.++.|...|.+++-+..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v------vgdfVV~GCy~g~lYfl~~~--------------- 81 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV------VGDFVVLGCYSGGLYFLCVK--------------- 81 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE------ECCEEEEEEccCcEEEEEec---------------
Confidence 357788888888888999998887665443332221221 25679999999999999998
Q ss_pred CCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcc
Q 001391 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (1088)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~ 290 (1088)
++.....+..-+.-=......+++..+..++.|++...-|..+..+
T Consensus 82 ------------------tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~c 127 (354)
T KOG4649|consen 82 ------------------TGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGC 127 (354)
T ss_pred ------------------chhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccce
Confidence 5555555543322223345678999999999999999999888543
No 313
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.58 E-value=0.14 Score=59.11 Aligned_cols=80 Identities=11% Similarity=0.149 Sum_probs=62.5
Q ss_pred ccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeecccccccceeEEEEEeccCCceEE
Q 001391 576 SSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEI 655 (1088)
Q Consensus 576 ~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~~~l 655 (1088)
.......|.|.+++|+.+.|+.|+.||+|.+||..++.. ..... . -..+.++|. +++..+
T Consensus 255 sipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t---------~~~ka-~-------~~P~~iaWH---p~gai~ 314 (545)
T PF11768_consen 255 SIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT---------LLAKA-E-------FIPTLIAWH---PDGAIF 314 (545)
T ss_pred EEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee---------eeeee-c-------ccceEEEEc---CCCcEE
Confidence 346778899999999999999999999999999876421 11101 0 247889999 678889
Q ss_pred EEecCCCeEEEEEeecCCcc
Q 001391 656 RSTGGDGCICYLEYDKDRES 675 (1088)
Q Consensus 656 ~t~g~Dg~i~iw~~~~~~~~ 675 (1088)
+.++.-|.+.+||+-.+...
T Consensus 315 ~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 315 VVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred EEEcCCceEEEEEeecCccc
Confidence 99999999999998765443
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.0023 Score=74.93 Aligned_cols=187 Identities=9% Similarity=0.071 Sum_probs=114.6
Q ss_pred CcceEEEEECCCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC-CCCCccc
Q 001391 308 NARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLE 386 (1088)
Q Consensus 308 ~~~I~~v~~~~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~-~~~~~~~ 386 (1088)
...+.|+++++.+++.|..+|.+++.+..+.+ .+...|.. . ..+|.++++|+.||+|.|-.+-+ ....
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~--~-----~~~Gey~asCS~DGkv~I~sl~~~~~~~--- 107 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNP-KTNFDHSS--S-----ILEGEYVASCSDDGKVVIGSLFTDDEIT--- 107 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCcc-cccccccc--c-----ccCCceEEEecCCCcEEEeeccCCccce---
Confidence 34678888999999999999999999998877 55555654 1 67899999999999999988732 1111
Q ss_pred CCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccC------CeEEEEecCCeEEEEEeccCC-cceeEEee
Q 001391 387 SHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSE------DTLYIATNHGYLYHTKLCDMD-SVNWNKIL 459 (1088)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~------~~ll~~t~~g~i~~~~~~~~~-~~~~~~~~ 459 (1088)
.++. ..++.++++.|+ +++++++..| ++.. ..+ -+.|..+.
T Consensus 108 -------------~~df---------------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~---er~wlgnk~~v~ 155 (846)
T KOG2066|consen 108 -------------QYDF---------------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLS---ERNWLGNKDSVV 155 (846)
T ss_pred -------------eEec---------------CCcceeEEeccchhhhhhhheeecCcce-EEEe---hhhhhcCcccee
Confidence 1111 136788888886 3677777777 5532 211 11222332
Q ss_pred eecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEE
Q 001391 460 QVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIF 539 (1088)
Q Consensus 460 ~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~ 539 (1088)
-....++|.++.+. +++||-++. -.|++||....+....+.... ...... ..-...++.++ ..|+
T Consensus 156 l~~~eG~I~~i~W~----------g~lIAWand-~Gv~vyd~~~~~~l~~i~~p~--~~~R~e-~fpphl~W~~~-~~LV 220 (846)
T KOG2066|consen 156 LSEGEGPIHSIKWR----------GNLIAWAND-DGVKVYDTPTRQRLTNIPPPS--QSVRPE-LFPPHLHWQDE-DRLV 220 (846)
T ss_pred eecCccceEEEEec----------CcEEEEecC-CCcEEEeccccceeeccCCCC--CCCCcc-cCCCceEecCC-CeEE
Confidence 33345678777652 356666664 468999998765433222211 000000 11111234444 4444
Q ss_pred EECCCCeEEEEecC
Q 001391 540 TADPKGRLKLWQLC 553 (1088)
Q Consensus 540 s~~~dg~i~vwd~~ 553 (1088)
.| ...+|++..+.
T Consensus 221 IG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 221 IG-WGDSVKICSIK 233 (846)
T ss_pred Ee-cCCeEEEEEEe
Confidence 44 56678998887
No 315
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.56 E-value=0.1 Score=56.25 Aligned_cols=217 Identities=9% Similarity=0.068 Sum_probs=125.6
Q ss_pred EEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEE
Q 001391 22 ALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVK 100 (1088)
Q Consensus 22 ~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~ 100 (1088)
++.|. +. .+.++.+.. ++.|..||..+++... +.. . ...++++.. +++ .++++.. +.+.
T Consensus 4 gp~~d--~~---~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~-~--~~~G~~~~~------~~g----~l~v~~~-~~~~ 63 (246)
T PF08450_consen 4 GPVWD--PR---DGRLYWVDIPGGRIYRVDPDTGEVEV-IDL-P--GPNGMAFDR------PDG----RLYVADS-GGIA 63 (246)
T ss_dssp EEEEE--TT---TTEEEEEETTTTEEEEEETTTTEEEE-EES-S--SEEEEEEEC------TTS----EEEEEET-TCEE
T ss_pred ceEEE--CC---CCEEEEEEcCCCEEEEEECCCCeEEE-Eec-C--CCceEEEEc------cCC----EEEEEEc-CceE
Confidence 45666 63 156666654 6999999998876532 332 2 267777762 344 4555554 5555
Q ss_pred EEEeccCCCCCCCCCCccccccceeeecc--C-CCCcEEEEEEecccCCCCEEEEEEcC--------CcEEEEEcCCCce
Q 001391 101 LFELNFELSPNSQYQPETCVNLSLVQSLP--R-LSHWVFDVCFLKVCNGNRSLAIGCSD--------NSIRVWDISNSSI 169 (1088)
Q Consensus 101 iw~l~~~~~~~~~~~~~~~~~~~~~~~l~--~-h~~~I~~v~f~p~~~d~~~lasgs~D--------g~V~iWd~~~~~~ 169 (1088)
++|+.... .+.+.... . .....+++++.| +|.+.++-... |.|..++.. ++.
T Consensus 64 ~~d~~~g~-------------~~~~~~~~~~~~~~~~~ND~~vd~---~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~ 126 (246)
T PF08450_consen 64 VVDPDTGK-------------VTVLADLPDGGVPFNRPNDVAVDP---DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV 126 (246)
T ss_dssp EEETTTTE-------------EEEEEEEETTCSCTEEEEEEEE-T---TS-EEEEEECCBCTTCGGSEEEEEEETT-SEE
T ss_pred EEecCCCc-------------EEEEeeccCCCcccCCCceEEEcC---CCCEEEEecCCCccccccccceEEECCC-CeE
Confidence 55876543 33344432 2 346789999999 99977665433 446666666 443
Q ss_pred EEEeccCCceeEEEEeeecCCCCCcEEE-EEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee
Q 001391 170 ILEVHSPERCLLYSMKLWGDNLEALRIA-SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1088)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~s~~~~~l~-sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 248 (1088)
...... ......+++ ++++..|+ +-+..+.|..+++....... ...+.
T Consensus 127 ~~~~~~--~~~pNGi~~---s~dg~~lyv~ds~~~~i~~~~~~~~~~~~--------------------------~~~~~ 175 (246)
T PF08450_consen 127 TVVADG--LGFPNGIAF---SPDGKTLYVADSFNGRIWRFDLDADGGEL--------------------------SNRRV 175 (246)
T ss_dssp EEEEEE--ESSEEEEEE---ETTSSEEEEEETTTTEEEEEEEETTTCCE--------------------------EEEEE
T ss_pred EEEecC--cccccceEE---CCcchheeecccccceeEEEeccccccce--------------------------eeeee
Confidence 222221 111223333 46776554 66778888888886111000 01223
Q ss_pred eEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC
Q 001391 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT 317 (1088)
Q Consensus 249 ~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~ 317 (1088)
+..+..-.+..-.+++..+|...++....+.|.+++.+. + .+. ...-....+++++|.
T Consensus 176 ~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G-~--------~~~--~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 176 FIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDG-K--------LLR--EIELPVPRPTNCAFG 233 (246)
T ss_dssp EEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTS-C--------EEE--EEE-SSSSEEEEEEE
T ss_pred EEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCc-c--------EEE--EEcCCCCCEEEEEEE
Confidence 333444445588999999999988888889999999873 2 222 222223478999995
No 316
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.41 E-value=0.17 Score=58.44 Aligned_cols=115 Identities=10% Similarity=0.101 Sum_probs=80.5
Q ss_pred CCCCEEEEEEcCC-CCEEEE----EECCCcE----EEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEE
Q 001391 255 HEGSIFRIEWSSC-GSKLVS----VSDDRSA----RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIIT 323 (1088)
Q Consensus 255 h~~~V~~v~~sp~-g~~l~s----~s~Dg~v----~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~s 323 (1088)
-+....++.|+-. ...+.| .+.+|.+ .+|+....+. +.+. .+....+..|.+++++ ...++.
T Consensus 204 TE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~kl------qrvs-vtsipL~s~v~~ca~sp~E~kLvl 276 (545)
T PF11768_consen 204 TENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKL------QRVS-VTSIPLPSQVICCARSPSEDKLVL 276 (545)
T ss_pred ecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCce------eEEE-EEEEecCCcceEEecCcccceEEE
Confidence 3445577778753 333433 2334433 4566655433 4444 3556778889999998 589999
Q ss_pred EeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 324 AGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 324 g~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
|+.||+|.+||...+..... ...- ..+.++|+|+|..+++|+.-|.+.+||+.
T Consensus 277 GC~DgSiiLyD~~~~~t~~~-ka~~-~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 277 GCEDGSIILYDTTRGVTLLA-KAEF-IPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred EecCCeEEEEEcCCCeeeee-eecc-cceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 99999999999844333322 2233 46789999999999999999999999984
No 317
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.39 E-value=0.13 Score=57.93 Aligned_cols=185 Identities=11% Similarity=0.114 Sum_probs=120.3
Q ss_pred CcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCC----CcEEEEEec---------C-CeEEEEEeccCccccCCCCC
Q 001391 157 NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE----ALRIASGTI---------Y-NEIIVWKVDWEHVAPLLNSP 222 (1088)
Q Consensus 157 g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~----~~~l~sg~~---------d-g~I~vwd~~~~~~~~~~~~~ 222 (1088)
..|++.|..+.+.+.++.-+....+.+++.+....+ ..+|+.|+. . |.|.++++... +.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~---~~---- 74 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISES---PE---- 74 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS---------
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcc---cc----
Confidence 358999999998888877777777788777765542 567887764 2 88999998821 00
Q ss_pred CCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeece
Q 001391 223 EGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS 302 (1088)
Q Consensus 223 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~ 302 (1088)
....-+.+.. ...+++|++++-- +.+++.+.. +.|.+|++...+. ... .
T Consensus 75 -------------------~~~~l~~i~~-~~~~g~V~ai~~~--~~~lv~~~g-~~l~v~~l~~~~~-------l~~-~ 123 (321)
T PF03178_consen 75 -------------------NNFKLKLIHS-TEVKGPVTAICSF--NGRLVVAVG-NKLYVYDLDNSKT-------LLK-K 123 (321)
T ss_dssp ----------------------EEEEEEE-EEESS-EEEEEEE--TTEEEEEET-TEEEEEEEETTSS-------EEE-E
T ss_pred -------------------cceEEEEEEE-EeecCcceEhhhh--CCEEEEeec-CEEEEEEccCccc-------chh-h
Confidence 0001122222 2357889998876 334555444 6899999988641 222 1
Q ss_pred eeeccCcceEEEEECCCEEEEEeCCCcEEEEcC--CCceeEEEc-ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 303 VLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS--DGKQLKMIK-EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 303 ~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~--~~~~~~~~~-~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
........+.++...+++++.|.....+.++.. .++.+..+. ......++++.+.++++.++.+..+|.+.++....
T Consensus 124 ~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 124 AFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred heecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 333344478888888889999998888887755 455444433 22233588888886667999999999999998853
No 318
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.37 E-value=0.03 Score=65.13 Aligned_cols=150 Identities=9% Similarity=0.050 Sum_probs=86.0
Q ss_pred eeeEEEEEeccCCCCCCCCE-EEE-Ee---CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 18 GEISALCFVHLPSHLSSLPF-LLA-GS---GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~-laa-g~---d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
+.+..-.|+ || ++. ++. .. ...|.++|+.+|+...... ..+ ......|+ |||+ .++.
T Consensus 188 ~~~~~p~wS--pD----G~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g-~~~~~~~S-------PDG~---~la~ 249 (419)
T PRK04043 188 GLNIFPKWA--NK----EQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQG-MLVVSDVS-------KDGS---KLLL 249 (419)
T ss_pred CCeEeEEEC--CC----CCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCC-cEEeeEEC-------CCCC---EEEE
Confidence 356678999 99 653 443 22 2789999999886544333 333 35667788 8884 4443
Q ss_pred EEC---CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc-CC--cEEEEEcCC
Q 001391 93 LFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DN--SIRVWDISN 166 (1088)
Q Consensus 93 ~~g---d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~-Dg--~V~iWd~~~ 166 (1088)
+.. +..|.++++.... .+.+. .+........|+| ||+.|+-.+. .+ .|.+.|+.+
T Consensus 250 ~~~~~g~~~Iy~~dl~~g~-------------~~~LT---~~~~~d~~p~~SP---DG~~I~F~Sdr~g~~~Iy~~dl~~ 310 (419)
T PRK04043 250 TMAPKGQPDIYLYDTNTKT-------------LTQIT---NYPGIDVNGNFVE---DDKRIVFVSDRLGYPNIFMKKLNS 310 (419)
T ss_pred EEccCCCcEEEEEECCCCc-------------EEEcc---cCCCccCccEECC---CCCEEEEEECCCCCceEEEEECCC
Confidence 332 3456666665322 22222 2222233457999 9987766553 23 577788877
Q ss_pred CceEEEeccCCceeEEEEeeecCCCCCcEEEEEecC---------CeEEEEEec
Q 001391 167 SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY---------NEIIVWKVD 211 (1088)
Q Consensus 167 ~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d---------g~I~vwd~~ 211 (1088)
++.......... ...+ +|++..|+..... ..|.+.|+.
T Consensus 311 g~~~rlt~~g~~----~~~~---SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~ 357 (419)
T PRK04043 311 GSVEQVVFHGKN----NSSV---STYKNYIVYSSRETNNEFGKNTFNLYLISTN 357 (419)
T ss_pred CCeEeCccCCCc----CceE---CCCCCEEEEEEcCCCcccCCCCcEEEEEECC
Confidence 765333222211 1122 6888877765433 246666665
No 319
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.35 E-value=0.0034 Score=74.36 Aligned_cols=183 Identities=13% Similarity=0.106 Sum_probs=124.8
Q ss_pred CEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCC
Q 001391 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQY 114 (1088)
Q Consensus 36 ~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~ 114 (1088)
.++..|-...+..+|..++++.+......+ .|.-|+-. + +.+.++ ..|+|.+-|.+.
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~-~v~imR~N---------n----r~lf~G~t~G~V~LrD~~s-------- 206 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSAS-GVTIMRYN---------N----RNLFCGDTRGTVFLRDPNS-------- 206 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCC-ceEEEEec---------C----cEEEeecccceEEeecCCc--------
Confidence 444444467888899999998888887554 46666543 2 333333 379999999874
Q ss_pred CCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc---------CCcEEEEEcCCCceEEEeccCCceeEEEEe
Q 001391 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS---------DNSIRVWDISNSSIILEVHSPERCLLYSMK 185 (1088)
Q Consensus 115 ~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~---------Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~ 185 (1088)
++.++++..|++.|.++.. .|++|+++|. |..|+|||++.-+.+.-+.-+.... -++
T Consensus 207 -------~~~iht~~aHs~siSDfDv-----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~--flr 272 (1118)
T KOG1275|consen 207 -------FETIHTFDAHSGSISDFDV-----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQ--FLR 272 (1118)
T ss_pred -------Cceeeeeeccccceeeeec-----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCch--hhh
Confidence 7789999999999999887 6788888874 7779999998877665444333221 123
Q ss_pred eecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEc
Q 001391 186 LWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS 265 (1088)
Q Consensus 186 ~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~s 265 (1088)
|++. -...++..+..|...+-|..+-. . ....+..+..-...+.++.++
T Consensus 273 f~Ps--l~t~~~V~S~sGq~q~vd~~~ls---------------------------N--P~~~~~~v~p~~s~i~~fDiS 321 (1118)
T KOG1275|consen 273 FHPS--LTTRLAVTSQSGQFQFVDTATLS---------------------------N--PPAGVKMVNPNGSGISAFDIS 321 (1118)
T ss_pred hccc--ccceEEEEecccceeeccccccC---------------------------C--CccceeEEccCCCcceeEEec
Confidence 3221 13466777778888888843100 0 111122222333459999999
Q ss_pred CCCCEEEEEECCCcEEEEEc
Q 001391 266 SCGSKLVSVSDDRSARIWEV 285 (1088)
Q Consensus 266 p~g~~l~s~s~Dg~v~iWd~ 285 (1088)
++++.++.+..+|.|.+|.-
T Consensus 322 sn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 322 SNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CCCceEEEecccCcEeeecC
Confidence 99999999999999999983
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.003 Score=74.02 Aligned_cols=184 Identities=13% Similarity=0.058 Sum_probs=124.1
Q ss_pred CCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEec
Q 001391 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 132 ~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
.+.+.|++++ ++.++-|.-+|.|++.+..... .+...+... ..+|.++++++.||.|.|-.+.
T Consensus 39 ~D~is~~av~-----~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~----------~~~Gey~asCS~DGkv~I~sl~ 101 (846)
T KOG2066|consen 39 NDAISCCAVH-----DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS----------ILEGEYVASCSDDGKVVIGSLF 101 (846)
T ss_pred hhHHHHHHhh-----cceeeeccccceEEEEecCCcc--ccccccccc----------ccCCceEEEecCCCcEEEeecc
Confidence 4678888885 4789999999999999875432 221111111 3579999999999999998877
Q ss_pred cCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCC-----CCEEEEEECCCcEEEEEcC
Q 001391 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC-----GSKLVSVSDDRSARIWEVR 286 (1088)
Q Consensus 212 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~-----g~~l~s~s~Dg~v~iWd~~ 286 (1088)
+......+. ...++.+|+++|+ .+.+++|+.-| +.++.-+
T Consensus 102 ---------------------------------~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~ 146 (846)
T KOG2066|consen 102 ---------------------------------TDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERN 146 (846)
T ss_pred ---------------------------------CCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhh
Confidence 233332222 3467899999998 46799999988 7776532
Q ss_pred CCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCC-----CeEEEEEcCCC
Q 001391 287 AEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR-----GIWRCLYDSLS 360 (1088)
Q Consensus 287 ~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~-----~V~~l~~~~dg 360 (1088)
=-. ......+..-.++|.++.|.+++++=++.+| ++|||. .++.+..+...... --..+.|.++.
T Consensus 147 wlg--------nk~~v~l~~~eG~I~~i~W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~ 217 (846)
T KOG2066|consen 147 WLG--------NKDSVVLSEGEGPIHSIKWRGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED 217 (846)
T ss_pred hhc--------CccceeeecCccceEEEEecCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC
Confidence 211 1111245556789999999999999998777 899999 66666655443321 12356666654
Q ss_pred CEEEEEeCCCCEEEEEcC
Q 001391 361 SLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 361 ~~l~tg~~Dg~I~iwd~~ 378 (1088)
.|+.|= --+|+|..++
T Consensus 218 -~LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 218 -RLVIGW-GDSVKICSIK 233 (846)
T ss_pred -eEEEec-CCeEEEEEEe
Confidence 455544 4478888885
No 321
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.27 E-value=0.038 Score=64.35 Aligned_cols=141 Identities=16% Similarity=0.169 Sum_probs=90.0
Q ss_pred eEEEEECCCEEEEEeCCCcEEEEcCCCceeEEEcc--cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCC
Q 001391 311 VWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKE--HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESH 388 (1088)
Q Consensus 311 I~~v~~~~~~l~sg~~Dg~i~vWd~~~~~~~~~~~--h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~ 388 (1088)
.+|+...+.+++.|+.-|.+++|+..+.....++. -.+ .+..+.++++..++|.|+..|.|.++.++......
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~-~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~---- 112 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATG-ITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD---- 112 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcccccCccc-eEEEEEecchhHhhhhhcCCceEEeehhhccCCCc----
Confidence 35555568999999999999999995544444333 333 45667788888899999999999999885421110
Q ss_pred ccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCC-eEEEEecCCeEEEEEeccCCcceeEEeeeecCCcce
Q 001391 389 PEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPI 467 (1088)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~-~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i 467 (1088)
.++.. ..-..|...|++++|++++ +++.+-..|.+....+............-...+.+|
T Consensus 113 ----------~~~~t---------~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~I 173 (726)
T KOG3621|consen 113 ----------LDYVT---------PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEI 173 (726)
T ss_pred ----------ceeec---------cccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcce
Confidence 01100 0011256689999999998 778888889988766654111111111112235677
Q ss_pred EEEecCCC
Q 001391 468 ICMDLLSN 475 (1088)
Q Consensus 468 ~~l~~~~~ 475 (1088)
.-+|...+
T Consensus 174 VQlD~~q~ 181 (726)
T KOG3621|consen 174 VQLDYLQS 181 (726)
T ss_pred EEeecccc
Confidence 77777554
No 322
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.019 Score=62.18 Aligned_cols=120 Identities=15% Similarity=0.140 Sum_probs=80.9
Q ss_pred ceeeeEEEeCCCCCEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCE
Q 001391 245 TAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSF 320 (1088)
Q Consensus 245 ~~~~~~~~~gh~~~V~~v~~sp~g~-~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~ 320 (1088)
+.+...-+.+|...|..++|+|..+ .+..++.+..|+|.|+.+.. .+. ....| ..+|+++|. .++
T Consensus 182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~--------~vs--sy~a~-~~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC--------VVS--SYIAY-NQIWSCCWDLDERHV 250 (463)
T ss_pred CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce--------eee--heecc-CCceeeeeccCCcce
Confidence 3344556678889999999999876 68889999999999999853 222 33444 789999998 478
Q ss_pred EEEEeCCCcEEEEcC--CCceeEEEcc-cCCCCeEEEEEc------CCCCEEEEEeCCCCEEEEEc
Q 001391 321 IITAGEDCTCRVWGS--DGKQLKMIKE-HIGRGIWRCLYD------SLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 321 l~sg~~Dg~i~vWd~--~~~~~~~~~~-h~~~~V~~l~~~------~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
|+.|-.+|.|.|||+ ...++..+.+ -...+|-.++.- +.+.+|+....+ +..|++
T Consensus 251 IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei 314 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEI 314 (463)
T ss_pred eEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhh
Confidence 999999999999999 2333333322 111245555432 234445444433 556666
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.19 E-value=0.074 Score=65.68 Aligned_cols=216 Identities=14% Similarity=0.165 Sum_probs=119.0
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECC
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd 96 (1088)
+.|.++.|. -+ ..-++.+. +|.|.+-|.++... .+-+.-..+|.+++|| ||.. .++.+.++
T Consensus 69 ~~i~s~~fl--~d----~~~i~v~~~~G~iilvd~et~~~--eivg~vd~GI~aaswS-------~Dee---~l~liT~~ 130 (1265)
T KOG1920|consen 69 DEIVSVQFL--AD----TNSICVITALGDIILVDPETLEL--EIVGNVDNGISAASWS-------PDEE---LLALITGR 130 (1265)
T ss_pred cceEEEEEe--cc----cceEEEEecCCcEEEEcccccce--eeeeeccCceEEEeec-------CCCc---EEEEEeCC
Confidence 568888888 54 34444444 68888889887643 2222233479999999 7762 45555667
Q ss_pred CEEEEEEeccCCCCC----------CCCCC------ccccc--------cceeeecc--C---CCCcEEEEEEecccCCC
Q 001391 97 KRVKLFELNFELSPN----------SQYQP------ETCVN--------LSLVQSLP--R---LSHWVFDVCFLKVCNGN 147 (1088)
Q Consensus 97 ~~v~iw~l~~~~~~~----------~~~~~------~~~~~--------~~~~~~l~--~---h~~~I~~v~f~p~~~d~ 147 (1088)
+++.+-+-....... +++.. ....+ .+.+...+ + -.+.=.+|.|-- ||
T Consensus 131 ~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg---Dg 207 (1265)
T KOG1920|consen 131 QTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG---DG 207 (1265)
T ss_pred cEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc---CC
Confidence 777665432111000 00000 00000 00000000 0 112234588877 99
Q ss_pred CEEEEEE----cC-CcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEE---ecCCeEEEEEeccCccccCC
Q 001391 148 RSLAIGC----SD-NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASG---TIYNEIIVWKVDWEHVAPLL 219 (1088)
Q Consensus 148 ~~lasgs----~D-g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg---~~dg~I~vwd~~~~~~~~~~ 219 (1088)
+++|+.. .+ +.|++||-+ +..- ....+....-.++.+ -|.|.++++- +.|+.|.++.-+..+
T Consensus 208 ~~fAVs~~~~~~~~RkirV~drE-g~Ln-s~se~~~~l~~~LsW---kPsgs~iA~iq~~~sd~~IvffErNGL~----- 277 (1265)
T KOG1920|consen 208 EYFAVSFVESETGTRKIRVYDRE-GALN-STSEPVEGLQHSLSW---KPSGSLIAAIQCKTSDSDIVFFERNGLR----- 277 (1265)
T ss_pred cEEEEEEEeccCCceeEEEeccc-chhh-cccCcccccccceee---cCCCCeEeeeeecCCCCcEEEEecCCcc-----
Confidence 9988832 24 789999987 4332 222222222223333 3678888874 345678888765100
Q ss_pred CCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEE---EECCCcEEEEEcCCCc
Q 001391 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS---VSDDRSARIWEVRAEY 289 (1088)
Q Consensus 220 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s---~s~Dg~v~iWd~~~~~ 289 (1088)
.+.....+......|..++|+.++..|+. ......|++|-+.+..
T Consensus 278 -------------------------hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 278 -------------------------HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred -------------------------ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 12222223333445899999999999887 4455559999998853
No 324
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.17 E-value=0.0081 Score=70.33 Aligned_cols=104 Identities=12% Similarity=0.129 Sum_probs=75.9
Q ss_pred EEEcCCCCEEEEEE----CCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC--CEEEEEeCCCcEEEEcC
Q 001391 262 IEWSSCGSKLVSVS----DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 262 v~~sp~g~~l~s~s----~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~--~~l~sg~~Dg~i~vWd~ 335 (1088)
..|+|...+++.++ ..|+|.||--... . .+- -..+-.+++++|++ -.|+.|-+-|.+.+|..
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfadtGE-P-----qr~------Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~ 88 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFADTGE-P-----QRD------VTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKT 88 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEecCCC-C-----Ccc------cccceehhhhccChHHHHHhhccccceeEEEec
Confidence 46788888777665 3577888753321 1 111 11223456799995 46788889999999999
Q ss_pred CCceeEE-EcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 336 DGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 336 ~~~~~~~-~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
..+...+ ...|.. +|..+.|+++|..++|+..-|.+.+|...
T Consensus 89 ~~~e~htv~~th~a-~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 89 NTTETHTVVETHPA-PIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCceeeeeccCCCC-CceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5555554 456776 79999999999999999999999999885
No 325
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.11 E-value=0.3 Score=55.99 Aligned_cols=287 Identities=14% Similarity=0.134 Sum_probs=135.6
Q ss_pred eeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCC
Q 001391 19 EISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~ 97 (1088)
.|+.+.|. ++ ..-|++|. .|.|.||-+...+--. .....+-..+.+.+.... +.
T Consensus 3 ~v~~vs~a--~~----t~Elav~~~~GeVv~~k~~~n~~~~---~~~~~~~~~~~~~~~~~~----------------~~ 57 (395)
T PF08596_consen 3 SVTHVSFA--PE----TLELAVGLESGEVVLFKFGKNQNYG---NREQPPDLDYNFRRFSLN----------------NS 57 (395)
T ss_dssp -EEEEEEE--TT----TTEEEEEETTS-EEEEEEEE---------------------S--GG----------------GS
T ss_pred eEEEEEec--CC----CceEEEEccCCcEEEEEcccCCCCC---ccCCCcccCccccccccc----------------CC
Confidence 58899999 87 56777777 6999999886533221 001101112222211111 12
Q ss_pred EEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccC-
Q 001391 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP- 176 (1088)
Q Consensus 98 ~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~- 176 (1088)
.-.|-|+.....+. ..--+.+..-+....+.|++++.+ |-.++|.|..+|.+.|.|++....+.+-.-.
T Consensus 58 ~~~l~di~~r~~~~------~~~gf~P~~l~~~~~g~vtal~~S----~iGFvaigy~~G~l~viD~RGPavI~~~~i~~ 127 (395)
T PF08596_consen 58 PGKLTDISDRAPPS------LKEGFLPLTLLDAKQGPVTALKNS----DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE 127 (395)
T ss_dssp S-SEEE-GGG--TT-------SEEEEEEEEE---S-SEEEEEE-----BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG
T ss_pred CcceEEehhhCCcc------cccccCchhheeccCCcEeEEecC----CCcEEEEEecCCcEEEEECCCCeEEeeccccc
Confidence 23345554322111 000134444555568999999997 5678999999999999999888777663211
Q ss_pred ------Cc----eeEEEEeeec-CCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccc
Q 001391 177 ------ER----CLLYSMKLWG-DNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (1088)
Q Consensus 177 ------~~----~~~~s~~~~~-~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 245 (1088)
.. ++-|++.-.. +.....++++|+..|.+.+|++. +... + ...
T Consensus 128 ~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIl-----p~~~--------------g-------~f~ 181 (395)
T PF08596_consen 128 SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKIL-----PSSN--------------G-------RFS 181 (395)
T ss_dssp --T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEE-----E-GG--------------G--------EE
T ss_pred cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEe-----cCCC--------------C-------ceE
Confidence 12 2333322222 22234689999999999999886 1000 0 001
Q ss_pred eeeeEEEeCCCCCEEEEE-EcCC-----------------C---CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceee
Q 001391 246 AVNLFRLVGHEGSIFRIE-WSSC-----------------G---SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (1088)
Q Consensus 246 ~~~~~~~~gh~~~V~~v~-~sp~-----------------g---~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~ 304 (1088)
.........+.+.|..+. ++.+ + ..++....+..+|++...+.+. .. ..
T Consensus 182 v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~--------~~--K~ 251 (395)
T PF08596_consen 182 VQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKG--------AH--KS 251 (395)
T ss_dssp EEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---E--------EE--EE
T ss_pred EEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcc--------cc--ee
Confidence 122222234566666654 3211 0 1233334456899999887532 21 11
Q ss_pred eccCcceEEEEE-------CCCEEEEEeCCCcEEEEcC-CCceeEEEcccCC---CCeEEEEEcCCCCEEEEEeCCCCEE
Q 001391 305 YGHNARVWDCCL-------TDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIG---RGIWRCLYDSLSSLLVTAGFDSAIK 373 (1088)
Q Consensus 305 ~~h~~~I~~v~~-------~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~---~~V~~l~~~~dg~~l~tg~~Dg~I~ 373 (1088)
.........+.+ .+..|++-..+|.++++.+ .-+.+..++-... +.+....++++|..++-.+.. .+.
T Consensus 252 ~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gps-E~~ 330 (395)
T PF08596_consen 252 FDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPS-EIQ 330 (395)
T ss_dssp -SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSS-EEE
T ss_pred eccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCcc-cEE
Confidence 222122222333 1467888889999999999 6666666554321 123455677888766555433 344
Q ss_pred EEEc
Q 001391 374 VHQF 377 (1088)
Q Consensus 374 iwd~ 377 (1088)
++.+
T Consensus 331 l~sv 334 (395)
T PF08596_consen 331 LFSV 334 (395)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4444
No 326
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0039 Score=68.10 Aligned_cols=215 Identities=15% Similarity=0.146 Sum_probs=128.9
Q ss_pred eccCcceEEEEEC-CCEEEEEeCCCcEEEEcCCC----ceeEEEcccCCCCeEEEEEcCCCCEEEEEeC-CCCEEEEEcC
Q 001391 305 YGHNARVWDCCLT-DSFIITAGEDCTCRVWGSDG----KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF-DSAIKVHQFQ 378 (1088)
Q Consensus 305 ~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~~~----~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~-Dg~I~iwd~~ 378 (1088)
+-|...|+.+... -.++++++.||.++.|.-.. +.+..+..|.+ .|.+++.+.++.++.|.+. |..++++|+.
T Consensus 6 ymhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~-~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 6 YMHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLG-VILSLAVSYDGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred hcccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHH-HHHhhhccccceeEeeccCcccceeEEEee
Confidence 4577778887777 78999999999999999743 33445677877 6999999999999999887 9999999985
Q ss_pred CC-CCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEE
Q 001391 379 AF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNK 457 (1088)
Q Consensus 379 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~ 457 (1088)
.- ++..+. .+..++...-..+.+..+..++.+. ..+|.+..++-...... .-
T Consensus 85 n~DminmiK------------------L~~lPg~a~wv~skGd~~s~IAVs~-------~~sg~i~VvD~~~d~~q--~~ 137 (558)
T KOG0882|consen 85 NFDMINMIK------------------LVDLPGFAEWVTSKGDKISLIAVSL-------FKSGKIFVVDGFGDFCQ--DG 137 (558)
T ss_pred ccchhhhcc------------------cccCCCceEEecCCCCeeeeEEeec-------ccCCCcEEECCcCCcCc--cc
Confidence 42 110000 0111111111112222233333221 23444553322221110 11
Q ss_pred eeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccc--------eeeeEEE
Q 001391 458 ILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIER--------QLLGTYW 529 (1088)
Q Consensus 458 ~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 529 (1088)
...+-+..++.++...+.+ +.+++....|.|.-|.....-+.+...+. |...++. +....-.
T Consensus 138 ~fkklH~sPV~~i~y~qa~--------Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~--~~~K~eTdLy~f~K~Kt~pts~ 207 (558)
T KOG0882|consen 138 YFKKLHFSPVKKIRYNQAG--------DSAVSIDISGMVEYWSAEGPFQFPRTNLN--FELKHETDLYGFPKAKTEPTSF 207 (558)
T ss_pred eecccccCceEEEEeeccc--------cceeeccccceeEeecCCCcccCcccccc--ccccccchhhcccccccCccce
Confidence 2233345677777775543 77888888999999987742111211111 1111111 1112225
Q ss_pred eecCCCeEEEEECCCCeEEEEecCCCCC
Q 001391 530 CKSLGHRFIFTADPKGRLKLWQLCDPFS 557 (1088)
Q Consensus 530 ~~s~dg~~L~s~~~dg~i~vwd~~~~~~ 557 (1088)
+++|++..+.+-+.|..|++++...+..
T Consensus 208 Efsp~g~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 208 EFSPDGAQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred EEccccCcccccCcccEEEEEEeccchh
Confidence 7899999999999999999999887653
No 327
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.073 Score=63.37 Aligned_cols=192 Identities=10% Similarity=0.102 Sum_probs=117.5
Q ss_pred CCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCC-EEEEEEcCCC
Q 001391 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGS-IFRIEWSSCG 268 (1088)
Q Consensus 190 s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-V~~v~~sp~g 268 (1088)
++.+..++.|+.+|.|.+.+-. .+.++.++.+... |..+-...+.
T Consensus 32 ~s~~~~vvigt~~G~V~~Ln~s----------------------------------~~~~~~fqa~~~siv~~L~~~~~~ 77 (933)
T KOG2114|consen 32 SSSTGSVVIGTADGRVVILNSS----------------------------------FQLIRGFQAYEQSIVQFLYILNKQ 77 (933)
T ss_pred cCCCceEEEeeccccEEEeccc----------------------------------ceeeehheecchhhhhHhhcccCc
Confidence 4667889999999988887754 3444667777766 4444444444
Q ss_pred CEEEEEECCC-----cEEEEEcCCCcccCCCCceeeeceeeec-----cCcceEEEEEC--CCEEEEEeCCCcEEEEcC-
Q 001391 269 SKLVSVSDDR-----SARIWEVRAEYWKDSDSIEEVGSSVLYG-----HNARVWDCCLT--DSFIITAGEDCTCRVWGS- 335 (1088)
Q Consensus 269 ~~l~s~s~Dg-----~v~iWd~~~~~~~~~~~~~~i~~~~~~~-----h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~- 335 (1088)
.+|++.+.|. .+++|+++......+ ++++......+ .+.++.+++.+ -..+|.|-.+|.|..+.-
T Consensus 78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~s--P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD 155 (933)
T KOG2114|consen 78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNS--PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD 155 (933)
T ss_pred eEEEEEeecCCCCceEEEEecccccCCCCC--cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc
Confidence 6888877775 489999987543211 33331112222 24567778887 478999999999988864
Q ss_pred --CCceeEE-EcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccce
Q 001391 336 --DGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQI 412 (1088)
Q Consensus 336 --~~~~~~~-~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (1088)
..+-.+. +....+.+|+.+++..++..++-...-..|.+|.+.++. ...
T Consensus 156 i~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~----------------------------p~~ 207 (933)
T KOG2114|consen 156 ILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT----------------------------PSL 207 (933)
T ss_pred chhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC----------------------------cce
Confidence 1121222 222223489999999888763333334578999886532 012
Q ss_pred eeccCCCCceEEEEeccCCeEEEEecCCeEEEE
Q 001391 413 RLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHT 445 (1088)
Q Consensus 413 ~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~ 445 (1088)
...+.++...+|..+++...-++.+....++.+
T Consensus 208 ~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY 240 (933)
T KOG2114|consen 208 KVLDNNGISLNCSSFSDGTYQFICAGSEFLYFY 240 (933)
T ss_pred eeeccCCccceeeecCCCCccEEEecCceEEEE
Confidence 223445556788888876543444445555533
No 328
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.07 E-value=0.49 Score=53.20 Aligned_cols=190 Identities=15% Similarity=0.179 Sum_probs=117.4
Q ss_pred CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-EC---------C-CEEEEEEeccCCCCCC
Q 001391 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FG---------E-KRVKLFELNFELSPNS 112 (1088)
Q Consensus 44 ~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~g---------d-~~v~iw~l~~~~~~~~ 112 (1088)
..|++.|..+.+.+.++.-.....+.+++.... . .+......++++ .+ . |.|.++++....
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l--~--~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~---- 73 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKL--K--GDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESP---- 73 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEE--T--TS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEE--c--CccccccCEEEEEecccccccccccCcEEEEEEEEccc----
Confidence 468999999999998888777767777776422 0 110000144444 33 1 789999998631
Q ss_pred CCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc-eEEEeccCCceeEEEEeeecCCC
Q 001391 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-IILEVHSPERCLLYSMKLWGDNL 191 (1088)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~-~~~~~~~~~~~~~~s~~~~~~s~ 191 (1088)
....+++++.... ..+.|++++-.. +. |+.+. .+.|.+|++...+ ....-..+....+.++..
T Consensus 74 ----~~~~~l~~i~~~~-~~g~V~ai~~~~----~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~----- 137 (321)
T PF03178_consen 74 ----ENNFKLKLIHSTE-VKGPVTAICSFN----GR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV----- 137 (321)
T ss_dssp --------EEEEEEEEE-ESS-EEEEEEET----TE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE-----
T ss_pred ----ccceEEEEEEEEe-ecCcceEhhhhC----CE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec-----
Confidence 1111345554443 468899998763 33 54443 5899999998887 554444333335555554
Q ss_pred CCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEE
Q 001391 192 EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (1088)
Q Consensus 192 ~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l 271 (1088)
.+.+|+.|+....+.++.++.. ......+. -.....+++++.|.++++.+
T Consensus 138 ~~~~I~vgD~~~sv~~~~~~~~-----------------------------~~~l~~va-~d~~~~~v~~~~~l~d~~~~ 187 (321)
T PF03178_consen 138 FKNYILVGDAMKSVSLLRYDEE-----------------------------NNKLILVA-RDYQPRWVTAAEFLVDEDTI 187 (321)
T ss_dssp ETTEEEEEESSSSEEEEEEETT-----------------------------TE-EEEEE-EESS-BEEEEEEEE-SSSEE
T ss_pred cccEEEEEEcccCEEEEEEEcc-----------------------------CCEEEEEE-ecCCCccEEEEEEecCCcEE
Confidence 2569999999999999877610 00111222 12345678999998776799
Q ss_pred EEEECCCcEEEEEcCC
Q 001391 272 VSVSDDRSARIWEVRA 287 (1088)
Q Consensus 272 ~s~s~Dg~v~iWd~~~ 287 (1088)
+.+..+|.+.++....
T Consensus 188 i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 188 IVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEETTSEEEEEEE-S
T ss_pred EEEcCCCeEEEEEECC
Confidence 9999999999998864
No 329
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0099 Score=64.33 Aligned_cols=83 Identities=19% Similarity=0.215 Sum_probs=68.8
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCC-EEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEe
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~-~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~ 200 (1088)
++...-+.+|...|.+++|+| ..+ ++..++.+++|+|.|+++...+.+...+ ..+||+++.- .+...|++|.
T Consensus 183 fkssq~lp~~g~~IrdlafSp---~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDl--de~h~IYaGl 255 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSP---FNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDL--DERHVIYAGL 255 (463)
T ss_pred cchhhcccccchhhhhhccCc---cccceeeeeccCceEEEEecccceeeeheecc--CCceeeeecc--CCcceeEEec
Confidence 444556778899999999999 555 7888999999999999999888777655 4578887743 3477899999
Q ss_pred cCCeEEEEEec
Q 001391 201 IYNEIIVWKVD 211 (1088)
Q Consensus 201 ~dg~I~vwd~~ 211 (1088)
..|.|.|||++
T Consensus 256 ~nG~VlvyD~R 266 (463)
T KOG1645|consen 256 QNGMVLVYDMR 266 (463)
T ss_pred cCceEEEEEcc
Confidence 99999999998
No 330
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.97 E-value=0.28 Score=57.13 Aligned_cols=189 Identities=9% Similarity=0.099 Sum_probs=105.7
Q ss_pred cEEEEEEecccCCCCE-EEEEEc---CCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEE-EecC--CeEE
Q 001391 134 WVFDVCFLKVCNGNRS-LAIGCS---DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS-GTIY--NEII 206 (1088)
Q Consensus 134 ~I~~v~f~p~~~d~~~-lasgs~---Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~s-g~~d--g~I~ 206 (1088)
.+..-.|+| ||+. ++..+. +..|.++|+.+++...-...+. ......+ +||+..++. .+.+ ..|.
T Consensus 189 ~~~~p~wSp---DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g--~~~~~~~---SPDG~~la~~~~~~g~~~Iy 260 (419)
T PRK04043 189 LNIFPKWAN---KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQG--MLVVSDV---SKDGSKLLLTMAPKGQPDIY 260 (419)
T ss_pred CeEeEEECC---CCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCC--cEEeeEE---CCCCCEEEEEEccCCCcEEE
Confidence 678899999 9984 554333 3568899998886544333222 1222333 688876553 3334 4566
Q ss_pred EEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC-CC--cEEEE
Q 001391 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DR--SARIW 283 (1088)
Q Consensus 207 vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~-Dg--~v~iW 283 (1088)
++++. .+. ...+..+.+......|+|||+.|+-.+. .+ .|.+.
T Consensus 261 ~~dl~---------------------------------~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~ 306 (419)
T PRK04043 261 LYDTN---------------------------------TKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMK 306 (419)
T ss_pred EEECC---------------------------------CCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEE
Confidence 66765 222 2333333333345579999998776654 33 57777
Q ss_pred EcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC---------CcEEEEcCCCceeEEEcccCCCCeE
Q 001391 284 EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---------CTCRVWGSDGKQLKMIKEHIGRGIW 352 (1088)
Q Consensus 284 d~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D---------g~i~vWd~~~~~~~~~~~h~~~~V~ 352 (1088)
|+.+++. +.+ +..+.. ...|+ +..|+..... ..|.+.|+.+.....+.... ...
T Consensus 307 dl~~g~~------~rl---t~~g~~----~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~--~~~ 371 (419)
T PRK04043 307 KLNSGSV------EQV---VFHGKN----NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANG--VNQ 371 (419)
T ss_pred ECCCCCe------EeC---ccCCCc----CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCC--CcC
Confidence 7766432 111 222221 13566 5555544433 25777787544455554432 233
Q ss_pred EEEEcCCCCEEEEEeCC-CC--EEEEEcCC
Q 001391 353 RCLYDSLSSLLVTAGFD-SA--IKVHQFQA 379 (1088)
Q Consensus 353 ~l~~~~dg~~l~tg~~D-g~--I~iwd~~~ 379 (1088)
...|+|||+.|+-...+ +. +.+.++++
T Consensus 372 ~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 372 FPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 67899999977665543 33 34444443
No 331
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.97 E-value=0.64 Score=53.95 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=39.6
Q ss_pred eEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEec
Q 001391 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELN 105 (1088)
Q Consensus 45 ~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~ 105 (1088)
.|+||+. +|+++.++.-.. .+|.++.|+ .+. .++++..||.++++|+.
T Consensus 62 ~I~iys~-sG~ll~~i~w~~-~~iv~~~wt-------~~e----~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDS-GRIVGMGWT-------DDE----ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECC-CCCEeEEEEECC-CCEEEEEEC-------CCC----eEEEEEcCCEEEEEeCC
Confidence 5999995 578888877544 489999998 443 89999999999999986
No 332
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.96 E-value=0.18 Score=59.65 Aligned_cols=240 Identities=9% Similarity=-0.049 Sum_probs=125.9
Q ss_pred CCCEEEEEe--CCeEEEEECCCCeeEEEEeeeCCcceEEEEec--cc----------ccccCCCccceeeEEEEEC--CC
Q 001391 34 SLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCN--FI----------NCTEGSVSTRVTFEVALFG--EK 97 (1088)
Q Consensus 34 ~~~~laag~--d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s--~~----------~~~~~~d~~~~~~~la~~g--d~ 97 (1088)
.|+||..-. .+.|-..++..-++-..+..+....+|++.|- |. .++..||| ..+.... .+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDG----k~l~~~~ey~~ 215 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDG----KDLDDPKKYRS 215 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCC----CEeecccceeE
Confidence 378888876 36677777776655555555555567877774 22 12333455 2222222 35
Q ss_pred EEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCC
Q 001391 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE 177 (1088)
Q Consensus 98 ~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~ 177 (1088)
.+.+.|.++ .+...++.- .+.-.-++++| +++++++.+.+ .+.+..+..+....
T Consensus 216 ~vSvID~et---------------meV~~qV~V-dgnpd~v~~sp---dGk~afvTsyN-------sE~G~tl~em~a~e 269 (635)
T PRK02888 216 LFTAVDAET---------------MEVAWQVMV-DGNLDNVDTDY---DGKYAFSTCYN-------SEEGVTLAEMMAAE 269 (635)
T ss_pred EEEEEECcc---------------ceEEEEEEe-CCCcccceECC---CCCEEEEeccC-------cccCcceeeecccc
Confidence 566666553 222222211 12345677888 88888777531 22222222222211
Q ss_pred ceeEEEEee---ecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 178 RCLLYSMKL---WGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 178 ~~~~~s~~~---~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
...+....+ ....++|.....+ ++.|.+.|..+.... ....+..+ .
T Consensus 270 ~d~~vvfni~~iea~vkdGK~~~V~--gn~V~VID~~t~~~~----------------------------~~~v~~yI-P 318 (635)
T PRK02888 270 RDWVVVFNIARIEEAVKAGKFKTIG--GSKVPVVDGRKAANA----------------------------GSALTRYV-P 318 (635)
T ss_pred CceEEEEchHHHHHhhhCCCEEEEC--CCEEEEEECCccccC----------------------------CcceEEEE-E
Confidence 111111100 0112455554442 577899997710000 01223222 2
Q ss_pred CCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCcccCC---CCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCC
Q 001391 255 HEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDS---DSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC 328 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s-~Dg~v~iWd~~~~~~~~~---~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg 328 (1088)
-.....++.++|||++++.++ .+.+|.+.|+.+.+..-. +....+. ....-.......+|. +....|-.-|.
T Consensus 319 VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vv--aevevGlGPLHTaFDg~G~aytslf~ds 396 (635)
T PRK02888 319 VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVV--AEPELGLGPLHTAFDGRGNAYTTLFLDS 396 (635)
T ss_pred CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEE--EeeccCCCcceEEECCCCCEEEeEeecc
Confidence 346678999999999987655 489999999988542100 0001110 001112334566777 56777888899
Q ss_pred cEEEEcCC
Q 001391 329 TCRVWGSD 336 (1088)
Q Consensus 329 ~i~vWd~~ 336 (1088)
.|..|++.
T Consensus 397 qv~kwn~~ 404 (635)
T PRK02888 397 QIVKWNIE 404 (635)
T ss_pred eeEEEehH
Confidence 99999983
No 333
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.96 E-value=0.12 Score=60.09 Aligned_cols=226 Identities=13% Similarity=0.151 Sum_probs=116.3
Q ss_pred ceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d 146 (1088)
....+.++ |+| +.++++|++.-.|+.... .+... .+.-...+|.+ .
T Consensus 34 ~p~~ls~n-------png----r~v~V~g~geY~iyt~~~---------------~r~k~-----~G~g~~~vw~~---~ 79 (443)
T PF04053_consen 34 YPQSLSHN-------PNG----RFVLVCGDGEYEIYTALA---------------WRNKA-----FGSGLSFVWSS---R 79 (443)
T ss_dssp --SEEEE--------TTS----SEEEEEETTEEEEEETTT---------------TEEEE-----EEE-SEEEE-T---S
T ss_pred CCeeEEEC-------CCC----CEEEEEcCCEEEEEEccC---------------Ccccc-----cCceeEEEEec---C
Confidence 35566666 887 788889999999998321 11111 13345677876 5
Q ss_pred CCEEEEEEcCCcEEEEEcCCCceEEEeccCCc-eeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCc
Q 001391 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPER-CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (1088)
Q Consensus 147 ~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~-~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~ 225 (1088)
++ +|+-...++|.++.--..+....+..+.. ..++. |.+|...+. +.|.+||+.
T Consensus 80 n~-yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~---------G~LL~~~~~-~~i~~yDw~-------------- 134 (443)
T PF04053_consen 80 NR-YAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG---------GNLLGVKSS-DFICFYDWE-------------- 134 (443)
T ss_dssp SE-EEEE-TTS-EEEEETTEE-TT-----SS-EEEEE----------SSSEEEEET-TEEEEE-TT--------------
T ss_pred cc-EEEEECCCeEEEEEcCccccceEEcCCcccceEEc---------CcEEEEECC-CCEEEEEhh--------------
Confidence 55 66666688899964323333233333321 11211 555555543 489999999
Q ss_pred cCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCccc--CCCCc-eeeece
Q 001391 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK--DSDSI-EEVGSS 302 (1088)
Q Consensus 226 s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~--~~~~~-~~i~~~ 302 (1088)
+++.++++... .|..|.|++++.+++-.+.+ .+.+++....... ..+.. ..+.
T Consensus 135 -------------------~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~-- 190 (443)
T PF04053_consen 135 -------------------TGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFE-- 190 (443)
T ss_dssp -------------------T--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEE--
T ss_pred -------------------HcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceE--
Confidence 67777777643 38999999999999998876 6778776543000 00000 1221
Q ss_pred eeeccCcceEEEEECCCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 303 VLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 303 ~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
....-..+|.+.+|.++.++-.... .++-+ +.|+ ...+..-. +++.-+.+.++.+.+....+|+.+..+.++.
T Consensus 191 ~~~E~~~~IkSg~W~~d~fiYtT~~-~lkYl-~~Ge-~~~i~~ld-~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 191 LIHEISERIKSGCWVEDCFIYTTSN-HLKYL-VNGE-TGIIAHLD-KPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEEEE-S--SEEEEETTEEEEE-TT-EEEEE-ETTE-EEEEEE-S-S--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred EEEEecceeEEEEEEcCEEEEEcCC-eEEEE-EcCC-cceEEEcC-CceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 2222256788888886655544444 66552 1332 22332222 3688888999888899999999999998753
No 334
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.92 E-value=0.77 Score=54.89 Aligned_cols=118 Identities=8% Similarity=-0.040 Sum_probs=59.9
Q ss_pred EEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEE-EEecccccccCCC-ccceeeEEEEECCCEEEEEEeccCCCCCCC
Q 001391 37 FLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHG-ISCNFINCTEGSV-STRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (1088)
Q Consensus 37 ~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~-i~~s~~~~~~~~d-~~~~~~~la~~gd~~v~iw~l~~~~~~~~~ 113 (1088)
.+..+. ++.|+-.|..+|+++-++.......... ..+.. .... .+ + .+++...++.|.-+|.++..
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~-g~~~-~~~~----~V~v~~~~g~v~AlD~~TG~----- 131 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNR-GVAY-WDPR----KVFFGTFDGRLVALDAETGK----- 131 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccC-CcEE-ccCC----eEEEecCCCeEEEEECCCCC-----
Confidence 344444 7999999999999988776533200000 00000 0000 12 2 56666678999999887643
Q ss_pred CCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE---------cCCcEEEEEcCCCceEEEec
Q 001391 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC---------SDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 114 ~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs---------~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
......+..+...-..+.-+|.- .+..++.++ .++.+.-.|..+++.+-+..
T Consensus 132 --------~~W~~~~~~~~~~~~~i~ssP~v-~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 132 --------QVWKFGNNDQVPPGYTMTGAPTI-VKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred --------EeeeecCCCCcCcceEecCCCEE-ECCEEEEeccccccccCCCCcEEEEEECCCCceeeEee
Confidence 11111111110000011111211 223444543 36788999999998877654
No 335
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.17 Score=60.37 Aligned_cols=183 Identities=15% Similarity=0.219 Sum_probs=112.3
Q ss_pred ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCc-EEEEEEecccCCCCEEEEEEcCC-----cEEEEEcCCC
Q 001391 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW-VFDVCFLKVCNGNRSLAIGCSDN-----SIRVWDISNS 167 (1088)
Q Consensus 94 ~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~-I~~v~f~p~~~d~~~lasgs~Dg-----~V~iWd~~~~ 167 (1088)
..+|.|.+++-. ++.++.+..+... |..+.... +..+|++-+.|+ .++||+++..
T Consensus 42 t~~G~V~~Ln~s----------------~~~~~~fqa~~~siv~~L~~~~---~~~~L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 42 TADGRVVILNSS----------------FQLIRGFQAYEQSIVQFLYILN---KQNFLFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred eccccEEEeccc----------------ceeeehheecchhhhhHhhccc---CceEEEEEeecCCCCceEEEEeccccc
Confidence 347777777644 4566777777766 55555443 446788877665 4899999643
Q ss_pred ------ceE-----EEeccC-CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCc
Q 001391 168 ------SII-----LEVHSP-ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (1088)
Q Consensus 168 ------~~~-----~~~~~~-~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~ 235 (1088)
.++ ..+..| ......++++ +.+-..+|.|-.+|.|..+.-+-.+
T Consensus 103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~V---s~~l~~Iv~Gf~nG~V~~~~GDi~R--------------------- 158 (933)
T KOG2114|consen 103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAV---SEDLKTIVCGFTNGLVICYKGDILR--------------------- 158 (933)
T ss_pred CCCCCcceeeeeeeeccCCCCCCCcceEEEE---EccccEEEEEecCcEEEEEcCcchh---------------------
Confidence 223 111223 2233334444 3457789999999999998643000
Q ss_pred eeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEE
Q 001391 236 CFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC 315 (1088)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~ 315 (1088)
..+....-....+++|+++++..+++.++-+.....|.+|.+..... .. ..+..|.....|..
T Consensus 159 --------Drgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p-------~~--~~ld~~G~~lnCss 221 (933)
T KOG2114|consen 159 --------DRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTP-------SL--KVLDNNGISLNCSS 221 (933)
T ss_pred --------ccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCc-------ce--eeeccCCccceeee
Confidence 01122222234567899999999888744444445799999985321 11 25777888899999
Q ss_pred EC-CCE-EEEEeCCCcEEEEcCCC
Q 001391 316 LT-DSF-IITAGEDCTCRVWGSDG 337 (1088)
Q Consensus 316 ~~-~~~-l~sg~~Dg~i~vWd~~~ 337 (1088)
++ +.. ++.++ +..+.+|+.++
T Consensus 222 ~~~~t~qfIca~-~e~l~fY~sd~ 244 (933)
T KOG2114|consen 222 FSDGTYQFICAG-SEFLYFYDSDG 244 (933)
T ss_pred cCCCCccEEEec-CceEEEEcCCC
Confidence 98 333 44444 44688999854
No 336
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.77 E-value=0.33 Score=51.60 Aligned_cols=208 Identities=8% Similarity=0.047 Sum_probs=110.5
Q ss_pred eeccCCCCcEEEEEEecccCCCC-EEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCe
Q 001391 126 QSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNE 204 (1088)
Q Consensus 126 ~~l~~h~~~I~~v~f~p~~~d~~-~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~ 204 (1088)
..+.+-.+.+..++|+| +.+ ++++....+.|...+. +|+.+.++.-....-.-.+++. .++.++++.-.++.
T Consensus 15 ~~l~g~~~e~SGLTy~p---d~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~---g~~~~vl~~Er~~~ 87 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNP---DTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYL---GNGRYVLSEERDQR 87 (248)
T ss_dssp EE-TT--S-EEEEEEET---TTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE----STTEEEEEETTTTE
T ss_pred eECCCccCCccccEEcC---CCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEE---CCCEEEEEEcCCCc
Confidence 45667777899999999 755 5566666777877776 5777777653322222234442 45666666667899
Q ss_pred EEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE-----eCCCCCEEEEEEcCCCCEEEEEECCCc
Q 001391 205 IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-----VGHEGSIFRIEWSSCGSKLVSVSDDRS 279 (1088)
Q Consensus 205 I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-----~gh~~~V~~v~~sp~g~~l~s~s~Dg~ 279 (1088)
+.++++....... .......+ ..++..+-+++|+|.++.|+.+-+..-
T Consensus 88 L~~~~~~~~~~~~---------------------------~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P 140 (248)
T PF06977_consen 88 LYIFTIDDDTTSL---------------------------DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKP 140 (248)
T ss_dssp EEEEEE----TT-----------------------------EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSS
T ss_pred EEEEEEecccccc---------------------------chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCC
Confidence 9999985111000 01111111 135567899999999888888877777
Q ss_pred EEEEEcCCCcccCCCCceeeec---eeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcCCCceeEEEcccCC-----
Q 001391 280 ARIWEVRAEYWKDSDSIEEVGS---SVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSDGKQLKMIKEHIG----- 348 (1088)
Q Consensus 280 v~iWd~~~~~~~~~~~~~~i~~---~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~----- 348 (1088)
.+++.+..... ......... .........+.+++++ +.+++...++..+..+|.+|+++..+.-..+
T Consensus 141 ~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~ 218 (248)
T PF06977_consen 141 KRLYEVNGFPG--GFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLS 218 (248)
T ss_dssp EEEEEEESTT---SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-S
T ss_pred hhhEEEccccC--ccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcc
Confidence 77877764110 000111100 0011233457888887 5688888999999999999988776533221
Q ss_pred ---CCeEEEEEcCCCCEEEEEeCCC
Q 001391 349 ---RGIWRCLYDSLSSLLVTAGFDS 370 (1088)
Q Consensus 349 ---~~V~~l~~~~dg~~l~tg~~Dg 370 (1088)
..--.|++.++|++.++ +.-+
T Consensus 219 ~~~~QpEGIa~d~~G~LYIv-sEpN 242 (248)
T PF06977_consen 219 KDIPQPEGIAFDPDGNLYIV-SEPN 242 (248)
T ss_dssp S---SEEEEEE-TT--EEEE-ETTT
T ss_pred cccCCccEEEECCCCCEEEE-cCCc
Confidence 23678999999875544 4433
No 337
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.61 E-value=0.67 Score=57.76 Aligned_cols=70 Identities=14% Similarity=0.106 Sum_probs=51.0
Q ss_pred CCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce--EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEE
Q 001391 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI--ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWK 209 (1088)
Q Consensus 132 ~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~--~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd 209 (1088)
++.|.++.|.. +...++.+..+|.|.+-|.++... +.....+ +.++.+ ++|+.+++-.+..+++.+-+
T Consensus 68 d~~i~s~~fl~---d~~~i~v~~~~G~iilvd~et~~~eivg~vd~G----I~aasw---S~Dee~l~liT~~~tll~mT 137 (1265)
T KOG1920|consen 68 DDEIVSVQFLA---DTNSICVITALGDIILVDPETLELEIVGNVDNG----ISAASW---SPDEELLALITGRQTLLFMT 137 (1265)
T ss_pred CcceEEEEEec---ccceEEEEecCCcEEEEcccccceeeeeeccCc----eEEEee---cCCCcEEEEEeCCcEEEEEe
Confidence 36899999998 888888999999999998876543 3333333 223333 68888988888888887765
Q ss_pred ec
Q 001391 210 VD 211 (1088)
Q Consensus 210 ~~ 211 (1088)
..
T Consensus 138 ~~ 139 (1265)
T KOG1920|consen 138 KD 139 (1265)
T ss_pred cc
Confidence 43
No 338
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.59 E-value=1.6 Score=48.00 Aligned_cols=265 Identities=15% Similarity=0.109 Sum_probs=145.6
Q ss_pred CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE--E-----CC--CEEEEEEeccCCCCCCCC
Q 001391 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL--F-----GE--KRVKLFELNFELSPNSQY 114 (1088)
Q Consensus 44 ~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~--~-----gd--~~v~iw~l~~~~~~~~~~ 114 (1088)
+.+.|+|..+++.+..+...- ...+..+ ||++ ..+.+. + |+ -.|.+||..+-.
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~---~~~~~~s-------pdgk--~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~------ 78 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF---LGNVALS-------PDGK--TIYVAETFYSRGTRGERTDVVEIWDTQTLS------ 78 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES---SEEEEE--------TTSS--EEEEEEEEEEETTEEEEEEEEEEEETTTTE------
T ss_pred ceEEEEECCCCcEEEEeeccc---CCceeEC-------CCCC--EEEEEEEEEeccccccceeEEEEEecCcCc------
Confidence 589999999999999888633 3446677 7774 122222 1 12 359999988532
Q ss_pred CCccccccceeeeccC-CC----CcEEEEEEecccCCCCEEEEE--EcCCcEEEEEcCCCceEEEeccCCceeEEEEeee
Q 001391 115 QPETCVNLSLVQSLPR-LS----HWVFDVCFLKVCNGNRSLAIG--CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLW 187 (1088)
Q Consensus 115 ~~~~~~~~~~~~~l~~-h~----~~I~~v~f~p~~~d~~~lasg--s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~ 187 (1088)
.+..-.++. |. ......+++. |++++++. +--.+|.|-|+..++.+.++..+....+|-.
T Consensus 79 -------~~~EI~iP~k~R~~~~~~~~~~~ls~---dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~--- 145 (342)
T PF06433_consen 79 -------PTGEIEIPPKPRAQVVPYKNMFALSA---DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPS--- 145 (342)
T ss_dssp -------EEEEEEETTS-B--BS--GGGEEE-T---TSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEE---
T ss_pred -------ccceEecCCcchheecccccceEEcc---CCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEec---
Confidence 111111111 01 1223457777 88877764 4566799999999999999988776555542
Q ss_pred cCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEE-EEEEcC
Q 001391 188 GDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIF-RIEWSS 266 (1088)
Q Consensus 188 ~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~-~v~~sp 266 (1088)
. ..-+.+-+.||.+.-..+...... ..+....|..-.++++ .-++..
T Consensus 146 ---~-~~~F~~lC~DGsl~~v~Ld~~Gk~----------------------------~~~~t~~F~~~~dp~f~~~~~~~ 193 (342)
T PF06433_consen 146 ---G-NRGFSMLCGDGSLLTVTLDADGKE----------------------------AQKSTKVFDPDDDPLFEHPAYSR 193 (342)
T ss_dssp ---E-TTEEEEEETTSCEEEEEETSTSSE----------------------------EEEEEEESSTTTS-B-S--EEET
T ss_pred ---C-CCceEEEecCCceEEEEECCCCCE----------------------------eEeeccccCCCCcccccccceEC
Confidence 1 235778889999998888711000 0000011111122222 223444
Q ss_pred CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeec--------cCcceEEEEEC--CCEEEEE---eC-----CC
Q 001391 267 CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG--------HNARVWDCCLT--DSFIITA---GE-----DC 328 (1088)
Q Consensus 267 ~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~--------h~~~I~~v~~~--~~~l~sg---~~-----Dg 328 (1088)
.+..++-.+..|.|+--|+..... +...+..+.. -.+.-.-++++ .+.|+.. +. |+
T Consensus 194 ~~~~~~F~Sy~G~v~~~dlsg~~~------~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdp 267 (342)
T PF06433_consen 194 DGGRLYFVSYEGNVYSADLSGDSA------KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDP 267 (342)
T ss_dssp TTTEEEEEBTTSEEEEEEETTSSE------EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-
T ss_pred CCCeEEEEecCCEEEEEeccCCcc------cccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCC
Confidence 555555567777777777766432 1111111100 00111123443 2222221 12 22
Q ss_pred c--EEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC-EEEEE-eCCCCEEEEEcCC
Q 001391 329 T--CRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTA-GFDSAIKVHQFQA 379 (1088)
Q Consensus 329 ~--i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~-~l~tg-~~Dg~I~iwd~~~ 379 (1088)
. |-++|+ +++.+..+.... ++.+|.++.+.+ +|++. ..++.+.+||..+
T Consensus 268 gteVWv~D~~t~krv~Ri~l~~--~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 268 GTEVWVYDLKTHKRVARIPLEH--PIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp EEEEEEEETTTTEEEEEEEEEE--EESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred ceEEEEEECCCCeEEEEEeCCC--ccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence 2 666666 788888876433 588999998876 66554 4589999999843
No 339
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.57 E-value=1 Score=53.41 Aligned_cols=104 Identities=11% Similarity=0.000 Sum_probs=64.7
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEE-EEEeCCCcEEEEcCCC-c---
Q 001391 266 SCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFI-ITAGEDCTCRVWGSDG-K--- 338 (1088)
Q Consensus 266 p~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l-~sg~~Dg~i~vWd~~~-~--- 338 (1088)
++|++... .++.|.+.|..+.... ....+ ....-....+.+.++ +.++ +++..+.++.|.|+.. +
T Consensus 286 kdGK~~~V--~gn~V~VID~~t~~~~---~~~v~---~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~ 357 (635)
T PRK02888 286 KAGKFKTI--GGSKVPVVDGRKAANA---GSALT---RYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF 357 (635)
T ss_pred hCCCEEEE--CCCEEEEEECCccccC---CcceE---EEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence 45665444 2567888887761100 00111 233344567788888 4554 5556689999999832 2
Q ss_pred ---------eeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 339 ---------QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 339 ---------~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
...+..--. +-...+|.++|+...|-.-|..|..|++..
T Consensus 358 ~~~~~~~~~vvaevevGl--GPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 358 DGKIKPRDAVVAEPELGL--GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hccCCccceEEEeeccCC--CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 123333222 345778999999888888999999999853
No 340
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.57 E-value=1.3 Score=52.91 Aligned_cols=32 Identities=16% Similarity=0.322 Sum_probs=26.8
Q ss_pred EEECCCEEEEEeCCCcEEEEcC-CCceeEEEcc
Q 001391 314 CCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKE 345 (1088)
Q Consensus 314 v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~ 345 (1088)
+...+..|+.++.||.++.+|. +|+.+..++.
T Consensus 402 ~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 402 LATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred eEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 3455788999999999999999 8998888765
No 341
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.49 E-value=3.5 Score=50.69 Aligned_cols=450 Identities=12% Similarity=0.051 Sum_probs=214.0
Q ss_pred EEEeccCCCCCCCCEEEEEe-CCeEEEEECCC------CeeEEEEee-eCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 23 LCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA------GTLIRPFQV-FHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 23 v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t------g~~~~~~~~-~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
+... |. +|++...- +|.+++..+.+ +..+.-|.. ++.-.|..++|.- .+.+. .+++..
T Consensus 119 ~~VD--p~----~R~Igl~~yqgl~~vIp~d~~~sht~~s~l~~fn~rfdel~v~Di~fly----~~s~p----t~~vly 184 (1096)
T KOG1897|consen 119 LLVD--PK----GRVIGLHLYQGLFKVIPIDSDESHTGGSLLKAFNVRFDELNVYDIKFLY----GCSDP----TLAVLY 184 (1096)
T ss_pred EEEC--CC----CcEEEEEeecCeEEEEEecccccccCcccccccccccCcceEEEEEEEc----CCCCC----ceEEEE
Confidence 4455 77 77777766 68888887766 444444442 3344588888862 12332 333333
Q ss_pred C---CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEE
Q 001391 95 G---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL 171 (1088)
Q Consensus 95 g---d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~ 171 (1088)
. ++.++.|+++.....-.+ .. .+.-..+. +.-+..-| .+.+..|+.|. ..|..-+- .....
T Consensus 185 ~Ds~~~Hv~~yelnl~~ke~~~--------~~-w~~~v~~~--a~~li~VP-~~~gGvlV~ge--~~I~Y~~~--~~~~a 248 (1096)
T KOG1897|consen 185 KDSDGRHVKTYELNLRDKEFVK--------GP-WSNNVDNG--ASMLIPVP-SPIGGVLVIGE--EFIVYMSG--DNFVA 248 (1096)
T ss_pred EcCCCcEEEEEEeccchhhccc--------cc-cccccccC--CceeeecC-CCCceEEEEee--eEEEEeeC--CceeE
Confidence 3 578999988854310000 00 00001111 22222223 11555666654 22322222 22222
Q ss_pred EeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEec-cCccccCCCCCCCccCCCCCCCCceeEecccccceeeeE
Q 001391 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD-WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (1088)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1088)
.......+..+. +.-.-..++...+.|+.+|.+...-+. +++... ......
T Consensus 249 i~p~~~~~~t~~-~~~~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s---------------------------~~~lkv 300 (1096)
T KOG1897|consen 249 IAPLTAEQSTIV-CYGRVDLQGSRYLLGDEDGMLFKLLLSHTGETVS---------------------------GLDLKV 300 (1096)
T ss_pred ecccccCCceEE-EcccccCCccEEEEecCCCcEEEEEeeccccccc---------------------------ceEEEE
Confidence 111111111111 111124677788889999988776654 111110 000111
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC------CCEEEEE
Q 001391 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT------DSFIITA 324 (1088)
Q Consensus 251 ~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~------~~~l~sg 324 (1088)
..-|-..-..++.+.++ ..+.+||.-|.=.+-.+.+.... ......+ .....-++|.+++.- ...++|+
T Consensus 301 e~lge~siassi~~L~n-g~lFvGS~~gdSqLi~L~~e~d~-gsy~~il---et~~NLgPI~Dm~Vvd~d~q~q~qivtC 375 (1096)
T KOG1897|consen 301 EYLGETSIASSINYLDN-GVLFVGSRFGDSQLIKLNTEPDV-GSYVVIL---ETFVNLGPIVDMCVVDLDRQGQGQIVTC 375 (1096)
T ss_pred EecCCcchhhhhhcccC-ceEEEeccCCceeeEEccccCCC-Cchhhhh---hhcccccceeeEEEEeccccCCceEEEE
Confidence 12233444455555555 46777887766667666654321 0001111 112234578887764 2456665
Q ss_pred e---CCCcEEEEcC--CCceeE--EEcccCCCCeEEEE--EcCCC-CEEEEEeCCCCEEEEEcCCCCCCcccCCcccccc
Q 001391 325 G---EDCTCRVWGS--DGKQLK--MIKEHIGRGIWRCL--YDSLS-SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEF 394 (1088)
Q Consensus 325 ~---~Dg~i~vWd~--~~~~~~--~~~~h~~~~V~~l~--~~~dg-~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 394 (1088)
+ .||++|+..- .-..+. .+.+-. ++|.+. ++++- .+|+.+--+ .-++..+..+ .... ...+|
T Consensus 376 sGa~kdgSLRiiRngi~I~e~A~i~l~Gik--g~w~lk~~v~~~~d~ylvlsf~~-eTrvl~i~~e-~ee~----~~~gf 447 (1096)
T KOG1897|consen 376 SGAFKDGSLRIIRNGIGIDELASIDLPGIK--GMWSLKSMVDENYDNYLVLSFIS-ETRVLNISEE-VEET----EDPGF 447 (1096)
T ss_pred eCCCCCCcEEEEecccccceeeEeecCCcc--ceeEeeccccccCCcEEEEEecc-ceEEEEEccc-eEEe----ccccc
Confidence 4 6899999875 112232 345533 589988 43321 255544333 3455555432 1110 01122
Q ss_pred CCCcceEEeeeC----------------CCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEe
Q 001391 395 NGRTEIFSIKIP----------------NFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKI 458 (1088)
Q Consensus 395 ~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~ 458 (1088)
..+.+.+-...- ...+....|....+.....++....++++++.++.++...+.+.. ...+
T Consensus 448 ~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~---l~e~ 524 (1096)
T KOG1897|consen 448 STDEQTIFCSTINGNQLVQVTSNSIRLVSSAGLRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGG---LREV 524 (1096)
T ss_pred cccCceEEEEccCCceEEEEecccEEEEcchhhhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccc---eeee
Confidence 222222111111 111233444444443334444434467777776777655554443 2233
Q ss_pred eeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEE-EeecCCCeE
Q 001391 459 LQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTY-WCKSLGHRF 537 (1088)
Q Consensus 459 ~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~dg~~ 537 (1088)
.+.....++.|+|+.|-+ -.....+++++|.-+..+.+.-....... .............+.+ .++--|..+
T Consensus 525 ~~~~~e~evaCLDisp~~--d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~-----~~~~~l~~~~iPRSIl~~~~e~d~~y 597 (1096)
T KOG1897|consen 525 SHKEFEYEVACLDISPLG--DAPNKSRLLAVGLWSDISMILTFLPDLIL-----ITHEQLSGEIIPRSILLTTFEGDIHY 597 (1096)
T ss_pred eeheecceeEEEecccCC--CCCCcceEEEEEeecceEEEEEECCCcce-----eeeeccCCCccchheeeEEeeccceE
Confidence 344456789999998653 00123358898887776655544322111 1111111111112221 345556889
Q ss_pred EEEECCCCeEEEEecC
Q 001391 538 IFTADPKGRLKLWQLC 553 (1088)
Q Consensus 538 L~s~~~dg~i~vwd~~ 553 (1088)
|.++..||.+..+-+.
T Consensus 598 LlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 598 LLVALGDGALLYFVLD 613 (1096)
T ss_pred EEEEcCCceEEEEEEE
Confidence 9999999999776655
No 342
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.40 E-value=0.0086 Score=42.09 Aligned_cols=38 Identities=34% Similarity=0.605 Sum_probs=33.7
Q ss_pred eeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 001391 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (1088)
Q Consensus 247 ~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd 284 (1088)
.++..+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34566778999999999999999999999999999996
No 343
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.32 E-value=0.25 Score=44.69 Aligned_cols=69 Identities=22% Similarity=0.341 Sum_probs=49.3
Q ss_pred EEEEEEecccCCC-CEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEec
Q 001391 135 VFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 135 I~~v~f~p~~~d~-~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
|.++++...+.|| ..|++|+.|..||+|+- .+.+.++..... +.++.. .....++.+..+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~--v~~L~~----~~~~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDK--VTSLCS----LGGGRFAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccc--eEEEEE----cCCCEEEEEecCCEEEEEeCc
Confidence 7788888765555 47899999999999974 356666654443 233332 234679999999999999854
No 344
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.31 E-value=1.9 Score=45.88 Aligned_cols=165 Identities=10% Similarity=0.065 Sum_probs=91.0
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEeC--CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGSG--SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~d--~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g 95 (1088)
..+++|+|. |+ ...|+|-.| +.|..++. +|++++++.........+|++. .++ .++++..
T Consensus 22 ~e~SGLTy~--pd----~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~-------g~~----~~vl~~E 83 (248)
T PF06977_consen 22 DELSGLTYN--PD----TGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYL-------GNG----RYVLSEE 83 (248)
T ss_dssp S-EEEEEEE--TT----TTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE--------STT----EEEEEET
T ss_pred CCccccEEc--CC----CCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEE-------CCC----EEEEEEc
Confidence 459999999 98 666666654 88888886 5888888775333358899997 554 5555554
Q ss_pred -CCEEEEEEeccCCCCCCCCCCccccccceee--eccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC---Cce
Q 001391 96 -EKRVKLFELNFELSPNSQYQPETCVNLSLVQ--SLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN---SSI 169 (1088)
Q Consensus 96 -d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~--~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~---~~~ 169 (1088)
++.+.++++......-. ....+.+. ....+...+-.++|.| .++.|+.+-...-..++.+.. ...
T Consensus 84 r~~~L~~~~~~~~~~~~~------~~~~~~~~l~~~~~~N~G~EGla~D~---~~~~L~v~kE~~P~~l~~~~~~~~~~~ 154 (248)
T PF06977_consen 84 RDQRLYIFTIDDDTTSLD------RADVQKISLGFPNKGNKGFEGLAYDP---KTNRLFVAKERKPKRLYEVNGFPGGFD 154 (248)
T ss_dssp TTTEEEEEEE----TT--------EEEEEEEE---S---SS--EEEEEET---TTTEEEEEEESSSEEEEEEESTT-SS-
T ss_pred CCCcEEEEEEeccccccc------hhhceEEecccccCCCcceEEEEEcC---CCCEEEEEeCCCChhhEEEccccCccc
Confidence 78899999854220000 00001111 1123456689999999 877777777777777777754 222
Q ss_pred EEEec-------cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEec
Q 001391 170 ILEVH-------SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 170 ~~~~~-------~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
+.... ......+.++.++ ...+.+++-......|..+|..
T Consensus 155 ~~~~~~~~~~~~~~~~~d~S~l~~~--p~t~~lliLS~es~~l~~~d~~ 201 (248)
T PF06977_consen 155 LFVSDDQDLDDDKLFVRDLSGLSYD--PRTGHLLILSDESRLLLELDRQ 201 (248)
T ss_dssp -EEEE-HHHH-HT--SS---EEEEE--TTTTEEEEEETTTTEEEEE-TT
T ss_pred eeeccccccccccceeccccceEEc--CCCCeEEEEECCCCeEEEECCC
Confidence 21111 0011123344554 3456677777888888888855
No 345
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.27 E-value=0.0042 Score=72.96 Aligned_cols=198 Identities=10% Similarity=0.116 Sum_probs=124.1
Q ss_pred ccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEe
Q 001391 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (1088)
Q Consensus 121 ~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~ 200 (1088)
+++.++.+..|+...+|++|+- +.+.|++|+-.|.|+++++.+|.......+|... +.....+.+|.+..+.+
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~---~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~Sa----vT~vePs~dgs~~Ltss 1162 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSG---GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSA----VTLVEPSVDGSTQLTSS 1162 (1516)
T ss_pred hcccchhhhccccceeeEEeec---CCceEEeeeccceEEEEEccCccccccccccccc----cccccccCCcceeeeec
Confidence 4677888889999999999998 8899999999999999999999877766665432 23334466777666655
Q ss_pred cCCe--EEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCC
Q 001391 201 IYNE--IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR 278 (1088)
Q Consensus 201 ~dg~--I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg 278 (1088)
.... ..+|++. ..+.+.+.+.+ -.++.|+....+-+.|..-.
T Consensus 1163 s~S~PlsaLW~~~--------------------------------s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d 1206 (1516)
T KOG1832|consen 1163 SSSSPLSALWDAS--------------------------------STGGPRHSFDE----DKAVKFSNSLQFRALGTEAD 1206 (1516)
T ss_pred cccCchHHHhccc--------------------------------cccCccccccc----cceeehhhhHHHHHhccccc
Confidence 4433 5678776 13344444432 45677876654444444445
Q ss_pred cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC--CEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEE
Q 001391 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCL 355 (1088)
Q Consensus 279 ~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~--~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~ 355 (1088)
.+.+||+.++... ...+. ...+....-.++.|++ .+++ .||. +||. ..+.++.|..... .+ .-.
T Consensus 1207 ~a~~YDvqT~~~l----~tylt--~~~~~~y~~n~a~FsP~D~LIl---ndGv--LWDvR~~~aIh~FD~ft~-~~-~G~ 1273 (1516)
T KOG1832|consen 1207 DALLYDVQTCSPL----QTYLT--DTVTSSYSNNLAHFSPCDTLIL---NDGV--LWDVRIPEAIHRFDQFTD-YG-GGG 1273 (1516)
T ss_pred ceEEEecccCcHH----HHhcC--cchhhhhhccccccCCCcceEe---eCce--eeeeccHHHHhhhhhhee-cc-ccc
Confidence 6889999986431 01111 1111111225566663 3333 2443 6888 3344555543332 11 335
Q ss_pred EcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 356 YDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 356 ~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
|+|.|..++.-+ -|||+++
T Consensus 1274 FHP~g~eVIINS-----EIwD~RT 1292 (1516)
T KOG1832|consen 1274 FHPSGNEVIINS-----EIWDMRT 1292 (1516)
T ss_pred ccCCCceEEeec-----hhhhhHH
Confidence 899999888765 4899865
No 346
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.25 E-value=4.7 Score=49.62 Aligned_cols=106 Identities=12% Similarity=0.185 Sum_probs=68.3
Q ss_pred CCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcc
Q 001391 533 LGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (1088)
Q Consensus 533 ~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~ 612 (1088)
.+|++||.- ...|++|++...++ +.. ...|...+..+...-.|..+++|+--+++.+-.+...
T Consensus 838 fngkllA~I--n~~vrLye~t~~~e-------------Lr~--e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~ 900 (1096)
T KOG1897|consen 838 FNGKLLAGI--NQSVRLYEWTTERE-------------LRI--ECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGD 900 (1096)
T ss_pred hCCeEEEec--CcEEEEEEccccce-------------ehh--hhcccCCeEEEEEEecCcEEEEeeccceEEEEEEecc
Confidence 477887754 56789998875421 111 1256778999999999999999999999887766543
Q ss_pred cccccccccccccCcceeecccccccceeEEEEEeccCCceEEEEecCCCeEEEEEeec
Q 001391 613 LLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDK 671 (1088)
Q Consensus 613 ~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~~~ 671 (1088)
.- .+.. .-+.-++ .-.|++.+. ++ ..++-+-.+|.+.+-..+.
T Consensus 901 eg------~f~e-----vArD~~p-~Wmtaveil---~~-d~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 901 EG------NFEE-----VARDYNP-NWMTAVEIL---DD-DTYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred CC------ceEE-----eehhhCc-cceeeEEEe---cC-ceEEeecccccEEEEEecC
Confidence 20 0101 1111232 458888888 34 4455666788888777664
No 347
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.15 E-value=0.45 Score=43.07 Aligned_cols=106 Identities=13% Similarity=0.203 Sum_probs=66.6
Q ss_pred eEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCE
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKR 98 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~ 98 (1088)
|++|++. .-+..+...|++|+ |..||||+- .+.+..+...+ +|..+.-. ..+ ....+..+|+
T Consensus 2 V~al~~~--d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~--~v~~L~~~-------~~~----~F~Y~l~NGT 64 (111)
T PF14783_consen 2 VTALCLF--DFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETD--KVTSLCSL-------GGG----RFAYALANGT 64 (111)
T ss_pred eeEEEEE--ecCCCCcceEEEecCCcEEEEEeC--CcEEEEEeccc--ceEEEEEc-------CCC----EEEEEecCCE
Confidence 6788887 31112235666666 799999994 36777877533 58888776 443 5555666888
Q ss_pred EEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCC-CEEEEEEcCCcEE
Q 001391 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIR 160 (1088)
Q Consensus 99 v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~-~~lasgs~Dg~V~ 160 (1088)
|-+|+-.. ++.+. + -...+.++++...+.|| ..|++|-.+|.|-
T Consensus 65 VGvY~~~~----------------RlWRi-K-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 65 VGVYDRSQ----------------RLWRI-K-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEeCcc----------------eeeee-c-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 88887542 12221 1 12337777776644444 3688898888764
No 348
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.13 E-value=0.57 Score=57.64 Aligned_cols=125 Identities=14% Similarity=0.043 Sum_probs=82.2
Q ss_pred ceeeeEEEeCCCCC-EEEEEEcC-----CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeec-eeeeccCcceEEEEEC
Q 001391 245 TAVNLFRLVGHEGS-IFRIEWSS-----CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS-SVLYGHNARVWDCCLT 317 (1088)
Q Consensus 245 ~~~~~~~~~gh~~~-V~~v~~sp-----~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~-~~~~~h~~~I~~v~~~ 317 (1088)
.++.+.....|... |..++-.. +......|-.+..+..||.+-... ..+.. ...+.......|++-+
T Consensus 513 ~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~------k~v~~~~k~Y~~~~~Fs~~aTt 586 (794)
T PF08553_consen 513 RGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN------KLVDSQSKQYSSKNNFSCFATT 586 (794)
T ss_pred CCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC------ceeeccccccccCCCceEEEec
Confidence 56667776666543 54443221 123456677778899999986421 11110 1122334456777777
Q ss_pred -CCEEEEEeCCCcEEEEcCCCceeEE-EcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 318 -DSFIITAGEDCTCRVWGSDGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 318 -~~~l~sg~~Dg~i~vWd~~~~~~~~-~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
..+||.|+.+|.||+||..|+..++ +.+-. .||..|..+.||++|+..+ +..+.+++.
T Consensus 587 ~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG-~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 587 EDGYIAVGSNKGDIRLYDRLGKRAKTALPGLG-DPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CCceEEEEeCCCcEEeecccchhhhhcCCCCC-CCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 6899999999999999986655444 44444 4899999999999887666 456777775
No 349
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.11 E-value=0.0097 Score=41.80 Aligned_cols=38 Identities=29% Similarity=0.488 Sum_probs=33.3
Q ss_pred ceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEE
Q 001391 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWD 163 (1088)
Q Consensus 123 ~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd 163 (1088)
+....+..|...|.++.|.+ ++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSP---DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECC---CCCEEEEecCCCeEEEcC
Confidence 44566678899999999999 889999999999999996
No 350
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.02 E-value=0.69 Score=56.94 Aligned_cols=151 Identities=11% Similarity=0.092 Sum_probs=97.3
Q ss_pred CCCCEEEEEe--CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCC
Q 001391 33 SSLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSP 110 (1088)
Q Consensus 33 ~~~~~laag~--d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~ 110 (1088)
....+|+-.. ...|+-.|+..|+++.....+....|..++-...+ ....+ +..++.-.++.+..||.+...
T Consensus 491 ~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~-aqlt~----e~tflGls~n~lfriDpR~~~-- 563 (794)
T PF08553_consen 491 QDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKF-AQLTN----EQTFLGLSDNSLFRIDPRLSG-- 563 (794)
T ss_pred cccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccc-cccCC----CceEEEECCCceEEeccCCCC--
Confidence 4456766654 37899999999999999998776555555432110 00011 267888889999999988543
Q ss_pred CCCCCCcccccccee----eeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEee
Q 001391 111 NSQYQPETCVNLSLV----QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKL 186 (1088)
Q Consensus 111 ~~~~~~~~~~~~~~~----~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~ 186 (1088)
.+++ +.+ .......|++-.. ..+||+|+.+|.||+||- .++.-++.-...+..+..+..
T Consensus 564 -----------~k~v~~~~k~Y-~~~~~Fs~~aTt~----~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDv 626 (794)
T PF08553_consen 564 -----------NKLVDSQSKQY-SSKNNFSCFATTE----DGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDV 626 (794)
T ss_pred -----------Cceeecccccc-ccCCCceEEEecC----CceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEe
Confidence 1111 111 2334567776653 457999999999999994 333333433344555666665
Q ss_pred ecCCCCCcEEEEEecCCeEEEEEec
Q 001391 187 WGDNLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 187 ~~~s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
+.||.+|++.+ +..|.+.+..
T Consensus 627 ---t~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 627 ---TADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred ---cCCCcEEEEee-cceEEEEEEe
Confidence 67888877654 5667777754
No 351
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.96 E-value=0.96 Score=51.90 Aligned_cols=176 Identities=11% Similarity=0.088 Sum_probs=94.1
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeC-------CcceEEEEecccccccCCCcccee
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFH-------GIRLHGISCNFINCTEGSVSTRVT 88 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~-------~~~V~~i~~s~~~~~~~~d~~~~~ 88 (1088)
.|+|++++.| .- -++|+|+ +|.|.|.|++....+..-...+ ...|.++.|+.... +.|+- -.
T Consensus 86 ~g~vtal~~S--~i-----GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~--~~D~y-SS 155 (395)
T PF08596_consen 86 QGPVTALKNS--DI-----GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTL--GGDGY-SS 155 (395)
T ss_dssp S-SEEEEEE---BT-----SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE---TTSSS-EE
T ss_pred CCcEeEEecC--CC-----cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEec--CCCcc-cc
Confidence 4889999999 43 5999999 6999999999888887744322 23477888874321 22321 11
Q ss_pred e-EEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEe-ccc--------------CCC---CE
Q 001391 89 F-EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFL-KVC--------------NGN---RS 149 (1088)
Q Consensus 89 ~-~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~-p~~--------------~d~---~~ 149 (1088)
. +++....|.+.+|.+.... ++....+.......+.+.|..+..- ... ..+ .-
T Consensus 156 i~L~vGTn~G~v~~fkIlp~~--------~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g 227 (395)
T PF08596_consen 156 ICLLVGTNSGNVLTFKILPSS--------NGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPG 227 (395)
T ss_dssp EEEEEEETTSEEEEEEEEE-G--------GG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----E
T ss_pred eEEEEEeCCCCEEEEEEecCC--------CCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCc
Confidence 3 3344557999999987422 0111223333334566777777743 200 000 11
Q ss_pred EEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecC--CCCCcEEEEEecCCeEEEEEec
Q 001391 150 LAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGD--NLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 150 lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~--s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
+++...+..+|++...+.+...+.. ........+.+... ...+..|++-..+|.|+++.+-
T Consensus 228 ~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP 290 (395)
T PF08596_consen 228 YVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP 290 (395)
T ss_dssp EEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT
T ss_pred EEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECC
Confidence 3334447889999998877766554 22122222333211 1246678888899999999987
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.70 E-value=2.4 Score=49.37 Aligned_cols=137 Identities=16% Similarity=0.170 Sum_probs=76.3
Q ss_pred eEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEE
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRV 99 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v 99 (1088)
...+.++ |+ +++++++.+|.-.||.....+-.. .+ .-...+|. +.+ .+++.-..++|
T Consensus 35 p~~ls~n--pn----gr~v~V~g~geY~iyt~~~~r~k~--~G----~g~~~vw~-------~~n----~yAv~~~~~~I 91 (443)
T PF04053_consen 35 PQSLSHN--PN----GRFVLVCGDGEYEIYTALAWRNKA--FG----SGLSFVWS-------SRN----RYAVLESSSTI 91 (443)
T ss_dssp -SEEEE---TT----SSEEEEEETTEEEEEETTTTEEEE--EE----E-SEEEE--------TSS----EEEEE-TTS-E
T ss_pred CeeEEEC--CC----CCEEEEEcCCEEEEEEccCCcccc--cC----ceeEEEEe-------cCc----cEEEEECCCeE
Confidence 5689999 99 999999999999999955444422 22 23556777 543 44444448889
Q ss_pred EEEE-eccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCC-
Q 001391 100 KLFE-LNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE- 177 (1088)
Q Consensus 100 ~iw~-l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~- 177 (1088)
.|+. ++... ...+... ..+..+- .|.+|...+ ++.|.+||+++++.+.++..+.
T Consensus 92 ~I~kn~~~~~----------------~k~i~~~-~~~~~If------~G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~~v 147 (443)
T PF04053_consen 92 KIYKNFKNEV----------------VKSIKLP-FSVEKIF------GGNLLGVKS-SDFICFYDWETGKLIRRIDVSAV 147 (443)
T ss_dssp EEEETTEE-T----------------T-----S-S-EEEEE-------SSSEEEEE-TTEEEEE-TTT--EEEEESS-E-
T ss_pred EEEEcCcccc----------------ceEEcCC-cccceEE------cCcEEEEEC-CCCEEEEEhhHcceeeEEecCCC
Confidence 9973 33211 1111110 1122221 256666665 4489999999999999998663
Q ss_pred ceeEEEEeeecCCCCCcEEEEEecCCeEEEEEec
Q 001391 178 RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 178 ~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
+.+.| ++++.+++-.+. .++.+++..
T Consensus 148 k~V~W-------s~~g~~val~t~-~~i~il~~~ 173 (443)
T PF04053_consen 148 KYVIW-------SDDGELVALVTK-DSIYILKYN 173 (443)
T ss_dssp EEEEE--------TTSSEEEEE-S--SEEEEEE-
T ss_pred cEEEE-------ECCCCEEEEEeC-CeEEEEEec
Confidence 44444 367888888764 477787765
No 353
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.60 E-value=5.6 Score=45.32 Aligned_cols=276 Identities=13% Similarity=0.073 Sum_probs=135.7
Q ss_pred CCceEEecCCCce------eeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCC------------
Q 001391 4 KDLSEWRLDVGQY------LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHG------------ 65 (1088)
Q Consensus 4 ~~i~iWdl~~g~~------~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~------------ 65 (1088)
+.+.|+|+.+++. ...+....+| |+ ++++|-..++.|.+++..+++..+--.....
T Consensus 23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~s--P~----g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvye 96 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPPPPKLQDAKWS--PD----GKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYE 96 (353)
T ss_dssp EEEEEEETTTTEEEESS-EETTBSEEEE---SS----STEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHH
T ss_pred eeEEEEecCCCceEECcCCccccccceee--cC----CCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceecc
Confidence 4577899999872 2457889999 99 9999999999999999988855432221111
Q ss_pred ----cceEEEEecccccccCCCccceeeEEEE--ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEE
Q 001391 66 ----IRLHGISCNFINCTEGSVSTRVTFEVAL--FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVC 139 (1088)
Q Consensus 66 ----~~V~~i~~s~~~~~~~~d~~~~~~~la~--~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~ 139 (1088)
.+-.++-|| ||+ ..||. ..+..|+.+.+..-.... . ---.+..+.
T Consensus 97 EEv~~~~~~~~WS-------pd~----~~la~~~~d~~~v~~~~~~~~~~~~-----------~-------~yp~~~~~~ 147 (353)
T PF00930_consen 97 EEVFDRRSAVWWS-------PDS----KYLAFLRFDEREVPEYPLPDYSPPD-----------S-------QYPEVESIR 147 (353)
T ss_dssp HHTSSSSBSEEE--------TTS----SEEEEEEEE-TTS-EEEEEEESSST-----------E-------SS-EEEEEE
T ss_pred ccccccccceEEC-------CCC----CEEEEEEECCcCCceEEeeccCCcc-----------c-------cCCcccccc
Confidence 012455567 887 34444 346666666655221000 0 001344455
Q ss_pred EecccCCCCEEEEEEcCCcEEEEEcCCCceEE-Eec---cCCceeEEEEeeecCCCCCc-E-EEEEecCC---eEEEEEe
Q 001391 140 FLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL-EVH---SPERCLLYSMKLWGDNLEAL-R-IASGTIYN---EIIVWKV 210 (1088)
Q Consensus 140 f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~-~~~---~~~~~~~~s~~~~~~s~~~~-~-l~sg~~dg---~I~vwd~ 210 (1088)
+-. -|.-.... .+.++|+.+++... ... ......+..+.+. +++. + +..-..+. .+.+.|.
T Consensus 148 YPk---~G~~np~v----~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~---~d~~~l~~~~~nR~q~~~~l~~~d~ 217 (353)
T PF00930_consen 148 YPK---AGDPNPRV----SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWS---PDGKRLWVQWLNRDQNRLDLVLCDA 217 (353)
T ss_dssp --B---TTS---EE----EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEE---ETTEEEEEEEEETTSTEEEEEEEEE
T ss_pred cCC---CCCcCCce----EEEEEECCCCcEEEeeeccccCCCccCcccceec---CCCcEEEEEEcccCCCEEEEEEEEC
Confidence 422 22222111 36678888776532 211 2334445555542 3444 2 22233332 2344455
Q ss_pred ccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCE---EEEEEc-CCCC-EEEEEECCCcEEEEEc
Q 001391 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSI---FRIEWS-SCGS-KLVSVSDDRSARIWEV 285 (1088)
Q Consensus 211 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V---~~v~~s-p~g~-~l~s~s~Dg~v~iWd~ 285 (1088)
.++ ..+.+. .....++| ....|. +++. ++.....||.-+|+-+
T Consensus 218 ~tg-------------------------------~~~~~~-~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~ 265 (353)
T PF00930_consen 218 STG-------------------------------ETRVVL-EETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLY 265 (353)
T ss_dssp CTT-------------------------------TCEEEE-EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred CCC-------------------------------ceeEEE-EecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEE
Confidence 411 111111 11222333 244444 5554 4445557776666555
Q ss_pred CCCcccCCCCceeeeceeeeccCcceEE-EEEC---CCEEEEEeCCC----cEEEEcCC-CceeEEEcccCCCCeEEEEE
Q 001391 286 RAEYWKDSDSIEEVGSSVLYGHNARVWD-CCLT---DSFIITAGEDC----TCRVWGSD-GKQLKMIKEHIGRGIWRCLY 356 (1088)
Q Consensus 286 ~~~~~~~~~~~~~i~~~~~~~h~~~I~~-v~~~---~~~l~sg~~Dg----~i~vWd~~-~~~~~~~~~h~~~~V~~l~~ 356 (1088)
..... ... .+....-.|.. +.+. +.+.+++..+. .+..-++. +..+..+....+. -..+.|
T Consensus 266 ~~~~~-------~~~--~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~-~~~~~~ 335 (353)
T PF00930_consen 266 DLDGG-------KPR--QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD-HYSASF 335 (353)
T ss_dssp ETTSS-------EEE--ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST-TEEEEE
T ss_pred ccccc-------cee--ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC-ceEEEE
Confidence 44221 111 23333445544 3344 23455666533 34444456 7778888766653 268999
Q ss_pred cCCCCEEEEE
Q 001391 357 DSLSSLLVTA 366 (1088)
Q Consensus 357 ~~dg~~l~tg 366 (1088)
+|++++++-.
T Consensus 336 Spdg~y~v~~ 345 (353)
T PF00930_consen 336 SPDGKYYVDT 345 (353)
T ss_dssp -TTSSEEEEE
T ss_pred CCCCCEEEEE
Confidence 9999976644
No 354
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.52 E-value=2.6 Score=44.87 Aligned_cols=184 Identities=10% Similarity=0.039 Sum_probs=115.6
Q ss_pred ccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEE
Q 001391 128 LPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIV 207 (1088)
Q Consensus 128 l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~v 207 (1088)
+.|-...|.++.|+| +.+.|++......-.||=..+|+.+.++....-.-.-.+.+ ..++.++++--.++.+.+
T Consensus 81 i~g~~~nvS~LTynp---~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Iey---ig~n~fvi~dER~~~l~~ 154 (316)
T COG3204 81 ILGETANVSSLTYNP---DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEY---IGGNQFVIVDERDRALYL 154 (316)
T ss_pred cccccccccceeeCC---CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEE---ecCCEEEEEehhcceEEE
Confidence 345556699999999 88888888878888888778899888875322111112222 245667777778899998
Q ss_pred EEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001391 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (1088)
Q Consensus 208 wd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~ 287 (1088)
+.+.-.... ..... ..-++......+..--+++|.|..+.|..+=+-.-++|+.+..
T Consensus 155 ~~vd~~t~~---------------------~~~~~--~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 155 FTVDADTTV---------------------ISAKV--QKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred EEEcCCccE---------------------Eeccc--eEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 887611000 00000 0111111222245567899999999999888888888888774
Q ss_pred CcccCCCCceeeeceeeeccC-------cceEEEEEC---CCEEEEEeCCCcEEEEcCCCceeEEEcccC
Q 001391 288 EYWKDSDSIEEVGSSVLYGHN-------ARVWDCCLT---DSFIITAGEDCTCRVWGSDGKQLKMIKEHI 347 (1088)
Q Consensus 288 ~~~~~~~~~~~i~~~~~~~h~-------~~I~~v~~~---~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~ 347 (1088)
.... -... ....+. ..|.++.|. +.+++.+.+++.+.-.|..|.++..+.-+.
T Consensus 212 ~~~~-----l~~~--~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~ 274 (316)
T COG3204 212 SPSS-----LSVH--ASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTK 274 (316)
T ss_pred CCcc-----cccc--cccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEecc
Confidence 3210 0000 111111 235667776 678899999999999999888766654433
No 355
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.44 E-value=4.4 Score=43.09 Aligned_cols=116 Identities=14% Similarity=0.147 Sum_probs=73.5
Q ss_pred EEEEEeccCCCCCCCCEEEEEe--C-CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCC
Q 001391 21 SALCFVHLPSHLSSLPFLLAGS--G-SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97 (1088)
Q Consensus 21 ~~v~fs~~pd~~~~~~~laag~--d-~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~ 97 (1088)
-++.|. .+ +.++-+.. + ..|+.+|+.+|+.+.........--.+++.. .|. ....++.++
T Consensus 48 QGL~~~--~~----g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-------~d~----l~qLTWk~~ 110 (264)
T PF05096_consen 48 QGLEFL--DD----GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-------GDK----LYQLTWKEG 110 (264)
T ss_dssp EEEEEE--ET----TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-------TTE----EEEEESSSS
T ss_pred ccEEec--CC----CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-------CCE----EEEEEecCC
Confidence 366674 33 44444433 2 6899999999998887776554334567766 453 778889999
Q ss_pred EEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 98 ~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
...+||.++ ++.+.++.- ...=|.++. |++.|+.......++++|..+.+...++.
T Consensus 111 ~~f~yd~~t---------------l~~~~~~~y-~~EGWGLt~-----dg~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 111 TGFVYDPNT---------------LKKIGTFPY-PGEGWGLTS-----DGKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp EEEEEETTT---------------TEEEEEEE--SSS--EEEE-----CSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred eEEEEcccc---------------ceEEEEEec-CCcceEEEc-----CCCEEEEECCccceEEECCcccceEEEEE
Confidence 999999874 445554432 233456663 66666666667789999998887766654
No 356
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.13 E-value=7.7 Score=44.06 Aligned_cols=201 Identities=13% Similarity=0.147 Sum_probs=92.8
Q ss_pred CCCEEEEEe--CCeEEEEECCC----CeeEEEEee---eCC---cceEEEEecccccccCCCccceeeEEEEECC-----
Q 001391 34 SLPFLLAGS--GSQVLLYDLEA----GTLIRPFQV---FHG---IRLHGISCNFINCTEGSVSTRVTFEVALFGE----- 96 (1088)
Q Consensus 34 ~~~~laag~--d~~I~vwd~~t----g~~~~~~~~---~~~---~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd----- 96 (1088)
.+++|++.. .+.|+|.|+.+ .++.+.+.. +.. ..-|.+... |+|. .++.+-||
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hcl-------p~G~---imIS~lGd~~G~g 155 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCL-------PDGR---IMISALGDADGNG 155 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE--------SS-----EEEEEEEETTS-S
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeec-------CCcc---EEEEeccCCCCCC
Confidence 478888876 48999999874 355555553 111 122333333 6662 44544341
Q ss_pred -CEEEEEEeccCCCCCCCCCCccccccceeeecc---CCCCcEEEEEEecccCCCCEEEEEEc-----------------
Q 001391 97 -KRVKLFELNFELSPNSQYQPETCVNLSLVQSLP---RLSHWVFDVCFLKVCNGNRSLAIGCS----------------- 155 (1088)
Q Consensus 97 -~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~---~h~~~I~~v~f~p~~~d~~~lasgs~----------------- 155 (1088)
+.+.++|-++ ++...... +...--++.-+.| ..+.++|...
T Consensus 156 ~Ggf~llD~~t---------------f~v~g~We~~~~~~~~gYDfw~qp---r~nvMiSSeWg~P~~~~~Gf~~~d~~~ 217 (461)
T PF05694_consen 156 PGGFVLLDGET---------------FEVKGRWEKDRGPQPFGYDFWYQP---RHNVMISSEWGAPSMFEKGFNPEDLEA 217 (461)
T ss_dssp --EEEEE-TTT-----------------EEEE--SB-TT------EEEET---TTTEEEE-B---HHHHTT---TTTHHH
T ss_pred CCcEEEEcCcc---------------ccccceeccCCCCCCCCCCeEEcC---CCCEEEEeccCChhhcccCCChhHhhc
Confidence 3455655442 11222111 1123345666777 6666666431
Q ss_pred ---CCcEEEEEcCCCceEEEeccCC-ceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCC
Q 001391 156 ---DNSIRVWDISNSSIILEVHSPE-RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSS 231 (1088)
Q Consensus 156 ---Dg~V~iWd~~~~~~~~~~~~~~-~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~ 231 (1088)
..++.+||+.+.+.++++.-++ ..+...+++..+.....-++.+.-.++|..|--..
T Consensus 218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~------------------- 278 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDD------------------- 278 (461)
T ss_dssp H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-E-------------------
T ss_pred ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcC-------------------
Confidence 4579999999999999998654 44566788766544444455444555666554320
Q ss_pred CCCceeEecccccceeeeEEEeC-----------------CCCCEEEEEEcCCCCEEE-EEECCCcEEEEEcCCCcc
Q 001391 232 SDFKCFKLQDQQHTAVNLFRLVG-----------------HEGSIFRIEWSSCGSKLV-SVSDDRSARIWEVRAEYW 290 (1088)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~g-----------------h~~~V~~v~~sp~g~~l~-s~s~Dg~v~iWd~~~~~~ 290 (1088)
++. | ..+.+..+.. -..-|+.|..|.|.++|. ++-.+|.||.||+.....
T Consensus 279 --~g~---W----~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 279 --DGE---W----AAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp --TTE---E----EEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred --CCC---e----eeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 000 0 1111111111 134578999999999885 455689999999998644
No 357
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.12 E-value=6.7 Score=43.28 Aligned_cols=278 Identities=13% Similarity=0.166 Sum_probs=130.3
Q ss_pred CCceEEecCCCceeeeeE-----EEEEeccCCCCCCCCEEEEEe-----------CCeEEEEECCCCeeEEEEeeeCCcc
Q 001391 4 KDLSEWRLDVGQYLGEIS-----ALCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDLEAGTLIRPFQVFHGIR 67 (1088)
Q Consensus 4 ~~i~iWdl~~g~~~~~V~-----~v~fs~~pd~~~~~~~laag~-----------d~~I~vwd~~tg~~~~~~~~~~~~~ 67 (1088)
+.+.|.|..+++..|-|. -+..+ || ++.+.+.+ ...|.+||.+|-.....+..+.+.+
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~~~~~s--pd----gk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R 90 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLGNVALS--PD----GKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPR 90 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSEEEEE---TT----SSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B
T ss_pred ceEEEEECCCCcEEEEeecccCCceeEC--CC----CCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcch
Confidence 368899999999777765 46778 88 77777532 1479999999999888887754322
Q ss_pred eEEEEecccccccCCCccceeeEEEEEC---CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEeccc
Q 001391 68 LHGISCNFINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (1088)
Q Consensus 68 V~~i~~s~~~~~~~~d~~~~~~~la~~g---d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~ 144 (1088)
...+... .......|+ +.+.+.. ..+|.|.|+... +.+..+.- .+ |.-.-|.
T Consensus 91 ~~~~~~~-~~~~ls~dg----k~~~V~N~TPa~SVtVVDl~~~---------------kvv~ei~~-PG---C~~iyP~- 145 (342)
T PF06433_consen 91 AQVVPYK-NMFALSADG----KFLYVQNFTPATSVTVVDLAAK---------------KVVGEIDT-PG---CWLIYPS- 145 (342)
T ss_dssp --BS--G-GGEEE-TTS----SEEEEEEESSSEEEEEEETTTT---------------EEEEEEEG-TS---EEEEEEE-
T ss_pred heecccc-cceEEccCC----cEEEEEccCCCCeEEEEECCCC---------------ceeeeecC-CC---EEEEEec-
Confidence 2221111 000001343 2222222 344555554421 22222211 11 2222341
Q ss_pred CCCCEEEEEEcCCcEEEEEcC-CCceEEEe---ccCCceeEEE-EeeecCCCCCcEEEEEecCCeEEEEEeccCccccCC
Q 001391 145 NGNRSLAIGCSDNSIRVWDIS-NSSIILEV---HSPERCLLYS-MKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLL 219 (1088)
Q Consensus 145 ~d~~~lasgs~Dg~V~iWd~~-~~~~~~~~---~~~~~~~~~s-~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~ 219 (1088)
..+.+.+-+.||.+.-..+. .|+...+. ..+....++. -.+ ...+..++--+..|.|+--|+........
T Consensus 146 -~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~---~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~- 220 (342)
T PF06433_consen 146 -GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAY---SRDGGRLYFVSYEGNVYSADLSGDSAKFG- 220 (342)
T ss_dssp -ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EE---ETTTTEEEEEBTTSEEEEEEETTSSEEEE-
T ss_pred -CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccce---ECCCCeEEEEecCCEEEEEeccCCccccc-
Confidence 22346677889999999987 45544221 1222222221 111 12233344456778888888762111000
Q ss_pred CCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEE---C-----C--CcEEEEEcCCCc
Q 001391 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS---D-----D--RSARIWEVRAEY 289 (1088)
Q Consensus 220 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s---~-----D--g~v~iWd~~~~~ 289 (1088)
..+.+.... ....-.+ .+.-.-+++++..+.|..-- . | ..|.++|+.++
T Consensus 221 ---------------~~~~~~t~~-e~~~~Wr----PGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~- 279 (342)
T PF06433_consen 221 ---------------KPWSLLTDA-EKADGWR----PGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH- 279 (342)
T ss_dssp ---------------EEEESS-HH-HHHTTEE----E-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT-
T ss_pred ---------------CcccccCcc-ccccCcC----CcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC-
Confidence 000000000 0000000 01112244554443333211 1 2 14667777775
Q ss_pred ccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEE-eCCCcEEEEcC-CCceeEEEcccCC
Q 001391 290 WKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITA-GEDCTCRVWGS-DGKQLKMIKEHIG 348 (1088)
Q Consensus 290 ~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg-~~Dg~i~vWd~-~~~~~~~~~~h~~ 348 (1088)
+.+....+ ...+.++..+ ..+|+.. ..++.+.+||. +|+.+..+..-..
T Consensus 280 -------krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~ 333 (342)
T PF06433_consen 280 -------KRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGE 333 (342)
T ss_dssp -------EEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SS
T ss_pred -------eEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCC
Confidence 33331122 2346788887 3466544 56899999999 8999888875443
No 358
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.93 E-value=0.05 Score=41.06 Aligned_cols=31 Identities=16% Similarity=0.382 Sum_probs=28.7
Q ss_pred CceEEEEEeeeCCCEEEEEcCCCcEEEEeCC
Q 001391 580 GARIMCLDASFEDEVLFCGDLRGNLVLFPLL 610 (1088)
Q Consensus 580 ~~~It~l~~spdg~~LatGs~dg~I~Iw~~~ 610 (1088)
..+|.+++|||...+||+|+.+|.|.||.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999984
No 359
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.90 E-value=0.011 Score=67.57 Aligned_cols=203 Identities=17% Similarity=0.236 Sum_probs=120.7
Q ss_pred CcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceE-EEeccCCceeEEEEeeecCCCCCcEEEEEe----cCCeEEE
Q 001391 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII-LEVHSPERCLLYSMKLWGDNLEALRIASGT----IYNEIIV 207 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~-~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~----~dg~I~v 207 (1088)
..+.|++..-. .+...++.|..+|.|-+-.+....-. .++..+....+.++++. +-|...||+|- .|..+.|
T Consensus 57 qy~kcva~~y~-~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwn--eLDtn~LAagldkhrnds~~~I 133 (783)
T KOG1008|consen 57 QYVKCVASFYG-NDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWN--ELDTNHLAAGLDKHRNDSSLKI 133 (783)
T ss_pred CCceeehhhcC-CchhhhhhccccCceEEeecCCcccccceecccccccccccccc--cccHHHHHhhhhhhcccCCccc
Confidence 45677776651 13457899999999999887655433 33333333344455543 34667788874 4678999
Q ss_pred EEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001391 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (1088)
Q Consensus 208 wd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~ 287 (1088)
||+.+.-..|. ...... .+-......++|..+.+.+++|...+.+.++|++.
T Consensus 134 wdi~s~ltvPk---------------------------e~~~fs-~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq 185 (783)
T KOG1008|consen 134 WDINSLLTVPK---------------------------ESPLFS-SSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ 185 (783)
T ss_pred eecccccCCCc---------------------------cccccc-cccccCccccccccCcchhhcccccchhhhhhhhh
Confidence 99983211111 111110 01334455888888889999999999999999984
Q ss_pred CcccCCCCceeeeceeeeccCcceEEEEE---CCCEEEEEeCCCcEEEEcC---CCceeEEEcccCC---CCeEEEEEcC
Q 001391 288 EYWKDSDSIEEVGSSVLYGHNARVWDCCL---TDSFIITAGEDCTCRVWGS---DGKQLKMIKEHIG---RGIWRCLYDS 358 (1088)
Q Consensus 288 ~~~~~~~~~~~i~~~~~~~h~~~I~~v~~---~~~~l~sg~~Dg~i~vWd~---~~~~~~~~~~h~~---~~V~~l~~~~ 358 (1088)
... ....+ .+..+..+.. .++++++-. ||.|.+||. -..++..+..... +.+..++|.|
T Consensus 186 s~~----~~~sv-------nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycP 253 (783)
T KOG1008|consen 186 SLD----SVSSV-------NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCP 253 (783)
T ss_pred hhh----hhhhh-------hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEecc
Confidence 211 01111 1122333333 467877766 999999994 1223332221111 1388999998
Q ss_pred CCC-EEEEEeCC-CCEEEEEcC
Q 001391 359 LSS-LLVTAGFD-SAIKVHQFQ 378 (1088)
Q Consensus 359 dg~-~l~tg~~D-g~I~iwd~~ 378 (1088)
... ++++..+| ++|+++++.
T Consensus 254 trtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 254 TRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCcchhhhhccCcceEEEeccc
Confidence 643 45555554 789999884
No 360
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.51 E-value=4.8 Score=49.83 Aligned_cols=121 Identities=23% Similarity=0.268 Sum_probs=77.1
Q ss_pred CEEEEEeCCeEEEEECCCCeeEEEEe--e--------------------eCCcceEEEEecccccccCCCccceeeEEEE
Q 001391 36 PFLLAGSGSQVLLYDLEAGTLIRPFQ--V--------------------FHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1088)
Q Consensus 36 ~~laag~d~~I~vwd~~tg~~~~~~~--~--------------------~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~ 93 (1088)
+-|+++.|+.+.+||-..... .+.. . +-...|+.|.++ |+| .+++.
T Consensus 34 rNLl~~~d~~L~vWd~~e~~l-~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n-------~~g----~~lal 101 (717)
T PF10168_consen 34 RNLLACRDGDLFVWDSSECCL-LTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLN-------PTG----SLLAL 101 (717)
T ss_pred eeeEEEeCCEEEEEECCCCEE-EEEeeccccccccCccccCcceeecCCCCceeEEEEEEC-------CCC----CEEEE
Confidence 678888889999999654322 1111 0 112346777777 888 79999
Q ss_pred ECCCEEEEEEeccCCCCCCCCCCc-ccccccee--e---eccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC
Q 001391 94 FGEKRVKLFELNFELSPNSQYQPE-TCVNLSLV--Q---SLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (1088)
Q Consensus 94 ~gd~~v~iw~l~~~~~~~~~~~~~-~~~~~~~~--~---~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~ 167 (1088)
+|...|.|-.+.........|... ..+..+.. . ....+...|..+.|+|.+.++..|++-..|+++|+||+...
T Consensus 102 ~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 102 VGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 999999999886432111112110 01111111 0 11234568999999997666788999999999999999754
Q ss_pred c
Q 001391 168 S 168 (1088)
Q Consensus 168 ~ 168 (1088)
.
T Consensus 182 ~ 182 (717)
T PF10168_consen 182 Q 182 (717)
T ss_pred C
Confidence 3
No 361
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.40 E-value=12 Score=42.74 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=42.1
Q ss_pred CCEEEEE----------eCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEe
Q 001391 35 LPFLLAG----------SGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFEL 104 (1088)
Q Consensus 35 ~~~laag----------~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l 104 (1088)
+++++.. ..+.+.|||+.+++....... ...+....|| |+| ..++...++.|.++++
T Consensus 4 ~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~s-------P~g----~~~~~v~~~nly~~~~ 70 (353)
T PF00930_consen 4 GKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP--PPKLQDAKWS-------PDG----KYIAFVRDNNLYLRDL 70 (353)
T ss_dssp SSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E--ETTBSEEEE--------SSS----TEEEEEETTEEEEESS
T ss_pred CCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC--ccccccceee-------cCC----CeeEEEecCceEEEEC
Confidence 7777763 236899999999866543333 2368899999 888 6777777899999987
Q ss_pred cc
Q 001391 105 NF 106 (1088)
Q Consensus 105 ~~ 106 (1088)
..
T Consensus 71 ~~ 72 (353)
T PF00930_consen 71 AT 72 (353)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 362
>PHA02713 hypothetical protein; Provisional
Probab=94.20 E-value=2.9 Score=50.79 Aligned_cols=61 Identities=5% Similarity=0.026 Sum_probs=35.8
Q ss_pred CCCEEEEEECC------CcEEEEEcCC-CcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCC--cEEEEcC
Q 001391 267 CGSKLVSVSDD------RSARIWEVRA-EYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDC--TCRVWGS 335 (1088)
Q Consensus 267 ~g~~l~s~s~D------g~v~iWd~~~-~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg--~i~vWd~ 335 (1088)
+++..+.|+.+ ..+..||..+ .+. ..+. .+.........+.+.+.+.++||.|+ ++-.||.
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W------~~~~--~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGW------ELIT--TTESRLSALHTILHDNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCe------eEcc--ccCcccccceeEEECCEEEEEeeecceeehhhcCc
Confidence 45555666543 2467788887 444 2222 22223333445555688889999888 5666666
No 363
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.02 E-value=1.9 Score=49.22 Aligned_cols=122 Identities=9% Similarity=0.003 Sum_probs=81.5
Q ss_pred ceeeeEEEeCCCCCEEEEEEcCCCCE-------EEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccC----cceEE
Q 001391 245 TAVNLFRLVGHEGSIFRIEWSSCGSK-------LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN----ARVWD 313 (1088)
Q Consensus 245 ~~~~~~~~~gh~~~V~~v~~sp~g~~-------l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~----~~I~~ 313 (1088)
.++.+...+-|.. |.-+.+.|+.+. -+.|-.|..|.-||.+-... ..+. ...+|. ....|
T Consensus 365 ~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~------~kl~--~~q~kqy~~k~nFsc 435 (644)
T KOG2395|consen 365 RGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK------NKLA--VVQSKQYSTKNNFSC 435 (644)
T ss_pred cceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc------ceee--eeeccccccccccce
Confidence 5666666665555 777777776532 23455677888899875322 1221 333332 23455
Q ss_pred EEEC-CCEEEEEeCCCcEEEEcCCCceeEE-EcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 314 CCLT-DSFIITAGEDCTCRVWGSDGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 314 v~~~-~~~l~sg~~Dg~i~vWd~~~~~~~~-~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
.+-. ..+|+.|+.+|.||+||..++..++ +.+... +|..+..+.+|++|+..+ +..+.+-+.
T Consensus 436 ~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~-~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 436 FATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGD-AIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eeecCCceEEEeecCCcEEeehhhhhhhhhcccccCC-ceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 5554 6899999999999999996665555 555544 899999999999877655 556777765
No 364
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.01 E-value=3 Score=50.62 Aligned_cols=220 Identities=12% Similarity=0.035 Sum_probs=113.8
Q ss_pred CCEEEEEe-C------CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC-C------CEEE
Q 001391 35 LPFLLAGS-G------SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-E------KRVK 100 (1088)
Q Consensus 35 ~~~laag~-d------~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d------~~v~ 100 (1088)
+.+++.|+ . ..+..||..+++......-.....-+++++. .+ .+.+++| + +++-
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-------~~-----~lYv~GG~~~~~~~l~~ve 352 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-------NG-----KLYVVGGYDSGSDRLSSVE 352 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-------CC-----EEEEEccccCCCcccceEE
Confidence 45666654 3 4788999988754433332233235666665 33 5666666 4 3455
Q ss_pred EEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCc-----EEEEEcCCCceEEEecc
Q 001391 101 LFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNS-----IRVWDISNSSIILEVHS 175 (1088)
Q Consensus 101 iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~-----V~iWd~~~~~~~~~~~~ 175 (1088)
.||..... +..+..+...........+ +|.+-|+||.||. |..||..+.+.-.....
T Consensus 353 ~YD~~~~~-------------W~~~a~M~~~R~~~~v~~l-----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m 414 (571)
T KOG4441|consen 353 RYDPRTNQ-------------WTPVAPMNTKRSDFGVAVL-----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPM 414 (571)
T ss_pred EecCCCCc-------------eeccCCccCccccceeEEE-----CCEEEEEeccccccccccEEEecCCCCcccccCCC
Confidence 56655432 3334444433333333333 7788899998874 77788876654332221
Q ss_pred CCceeEEEEeeecCCCCCcEEEEEecCC------eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeee
Q 001391 176 PERCLLYSMKLWGDNLEALRIASGTIYN------EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (1088)
Q Consensus 176 ~~~~~~~s~~~~~~s~~~~~l~sg~~dg------~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 249 (1088)
...-....++. -++.+.+.|+.++ ++..||..++. |.. ..++
T Consensus 415 ~~~r~~~gv~~----~~g~iYi~GG~~~~~~~l~sve~YDP~t~~-------------------------W~~---~~~M 462 (571)
T KOG4441|consen 415 LTRRSGHGVAV----LGGKLYIIGGGDGSSNCLNSVECYDPETNT-------------------------WTL---IAPM 462 (571)
T ss_pred CcceeeeEEEE----ECCEEEEEcCcCCCccccceEEEEcCCCCc-------------------------eee---cCCc
Confidence 21111122221 3577777777554 35566665221 110 0111
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEECCC-----cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEE
Q 001391 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDR-----SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITA 324 (1088)
Q Consensus 250 ~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg-----~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg 324 (1088)
..-+.+-+ ++. -++...+.|+.|+ +|..+|..+.+. ..+. .+......+..+...+...+.|
T Consensus 463 ~~~R~~~g----~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W------~~v~--~m~~~rs~~g~~~~~~~ly~vG 529 (571)
T KOG4441|consen 463 NTRRSGFG----VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQW------TMVA--PMTSPRSAVGVVVLGGKLYAVG 529 (571)
T ss_pred ccccccce----EEE-ECCEEEEECCccCCCccceEEEEcCCCCce------eEcc--cCccccccccEEEECCEEEEEe
Confidence 11111111 221 2456667777665 367788877654 2221 2333344455566667888888
Q ss_pred eCCCc
Q 001391 325 GEDCT 329 (1088)
Q Consensus 325 ~~Dg~ 329 (1088)
+.||.
T Consensus 530 G~~~~ 534 (571)
T KOG4441|consen 530 GFDGN 534 (571)
T ss_pred cccCc
Confidence 87764
No 365
>PHA02713 hypothetical protein; Provisional
Probab=93.83 E-value=2.5 Score=51.35 Aligned_cols=63 Identities=3% Similarity=0.089 Sum_probs=34.1
Q ss_pred EEECCCEEEEEeCCC------cEEEEcCCC-ceeE---EEcccCCCCeEEEEEcCCCCEEEEEeCCC--CEEEEEcCC
Q 001391 314 CCLTDSFIITAGEDC------TCRVWGSDG-KQLK---MIKEHIGRGIWRCLYDSLSSLLVTAGFDS--AIKVHQFQA 379 (1088)
Q Consensus 314 v~~~~~~l~sg~~Dg------~i~vWd~~~-~~~~---~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg--~I~iwd~~~ 379 (1088)
+.+.+...+.||.++ .+..||... ..-. .+..... ..+++. -++.+.++||.|| .+..||..+
T Consensus 460 ~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~--~~~~~~-~~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 460 VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS--ALHTIL-HDNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc--cceeEE-ECCEEEEEeeecceeehhhcCccc
Confidence 344566677777542 356788743 2222 2222221 122222 2678889999888 566666643
No 366
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=93.76 E-value=17 Score=42.28 Aligned_cols=67 Identities=9% Similarity=0.059 Sum_probs=40.7
Q ss_pred cceEEEEEC--CCEEEEEeCCCcEEEEcCC-CceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 309 ARVWDCCLT--DSFIITAGEDCTCRVWGSD-GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 309 ~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~-~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
+++..++++ +++++.-..+|.+.+...+ .+.+..+..........+.|.-+...++.- ...+.+...
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~ 286 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVGP 286 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEECC
Confidence 568888888 6788888999999988873 234444443322245677776654332222 334555443
No 367
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.71 E-value=21 Score=43.09 Aligned_cols=31 Identities=10% Similarity=0.186 Sum_probs=25.6
Q ss_pred CCCEEEEEeCCCcEEEEcC-CCceeEEEcccC
Q 001391 317 TDSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347 (1088)
Q Consensus 317 ~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~ 347 (1088)
.+.+++.+..||.++.+|. +|+++..++...
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~ 502 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGS 502 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCCC
Confidence 3667888888999999999 899998876543
No 368
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=93.37 E-value=14 Score=40.20 Aligned_cols=147 Identities=11% Similarity=-0.023 Sum_probs=84.5
Q ss_pred CCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEE
Q 001391 192 EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (1088)
Q Consensus 192 ~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l 271 (1088)
.+..|+.|+.+| +.+++... ........ +...|..+...|+-+.+
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~--------------------------------~~~~~~i~--~~~~I~ql~vl~~~~~l 50 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSD--------------------------------PSKPTRIL--KLSSITQLSVLPELNLL 50 (275)
T ss_pred CCCEEEEEECCC-EEEEEecC--------------------------------CccceeEe--ecceEEEEEEecccCEE
Confidence 467888999998 88888830 11111111 22339999999988887
Q ss_pred EEEECCCcEEEEEcCCCcccCCCCceeeec----eeeeccCcceEEEE----ECCCEEEEEeCCCcEEEEcCCC------
Q 001391 272 VSVSDDRSARIWEVRAEYWKDSDSIEEVGS----SVLYGHNARVWDCC----LTDSFIITAGEDCTCRVWGSDG------ 337 (1088)
Q Consensus 272 ~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~----~~~~~h~~~I~~v~----~~~~~l~sg~~Dg~i~vWd~~~------ 337 (1088)
+.-++ +.+.++++..-............. .........+...+ ..+...+......+|.+|....
T Consensus 51 lvLsd-~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~ 129 (275)
T PF00780_consen 51 LVLSD-GQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS 129 (275)
T ss_pred EEEcC-CccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc
Confidence 77654 999999998754311100000000 00112223344444 1133444444455888888722
Q ss_pred ceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 338 KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 338 ~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+..+.+.-.. .+.+++|. ++.|+.|..+ .+.+.|+.+
T Consensus 130 ~~~ke~~lp~--~~~~i~~~--~~~i~v~~~~-~f~~idl~~ 166 (275)
T PF00780_consen 130 KLLKEISLPD--PPSSIAFL--GNKICVGTSK-GFYLIDLNT 166 (275)
T ss_pred ceeEEEEcCC--CcEEEEEe--CCEEEEEeCC-ceEEEecCC
Confidence 3455555443 58899998 3457776655 478888864
No 369
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.25 E-value=0.22 Score=50.67 Aligned_cols=107 Identities=18% Similarity=0.124 Sum_probs=68.1
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCceEEE-eccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCC
Q 001391 146 GNRSLAIGCSDNSIRVWDISNSSIILE-VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEG 224 (1088)
Q Consensus 146 d~~~lasgs~Dg~V~iWd~~~~~~~~~-~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~ 224 (1088)
-+..+++|+.+|.|.+|+....-.... .......+.. .++...++.+..++..+|.|+.|+..
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~---~Ip~~~~~~~~c~~~~dg~ir~~n~~------------- 132 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDL---GIPNGRDSSLGCVGAQDGRIRACNIK------------- 132 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhccccccee---ccccccccceeEEeccCCceeeeccc-------------
Confidence 445788999999999998862211111 1111111111 11123456788999999999999998
Q ss_pred ccCCCCCCCCceeEecccccceeeeEEEeCCC-CCEEEEEEcCCCCEEEEE--ECCCcEEEEEcCCC
Q 001391 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE-GSIFRIEWSSCGSKLVSV--SDDRSARIWEVRAE 288 (1088)
Q Consensus 225 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~V~~v~~sp~g~~l~s~--s~Dg~v~iWd~~~~ 288 (1088)
..+.+....+|+ .++.....+..+++++++ |.|..++.|++..-
T Consensus 133 --------------------p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 133 --------------------PNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred --------------------cCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 555666666777 555555556666677776 77777888877653
No 370
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.17 E-value=0.3 Score=56.48 Aligned_cols=70 Identities=14% Similarity=0.066 Sum_probs=60.7
Q ss_pred cceEEEEECC--CEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeE-EEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 309 ARVWDCCLTD--SFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIW-RCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 309 ~~I~~v~~~~--~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~-~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
..|--+.|+| .++|++.++|.+.+..++-+.+.++.-|.. .++ +++|.|||++|+.|-.||+|+++|...
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~-~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGE-NVTASLCWRPDGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCC-ccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence 4566777875 689999999999999998888999887766 566 999999999999999999999999954
No 371
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.08 E-value=6.4 Score=47.12 Aligned_cols=50 Identities=16% Similarity=0.288 Sum_probs=41.6
Q ss_pred CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEecc
Q 001391 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNF 106 (1088)
Q Consensus 44 ~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~ 106 (1088)
..|+||++ +|+++.++.-.++ ++-++.|+ .+. .++++..+|++.+|++..
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~-~lI~mgWs-------~~e----eLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHG-ELIGMGWS-------DDE----ELICVQKDGTVHVYGLLG 113 (829)
T ss_pred eeEEEEec-cccchHHHHhcCC-Ceeeeccc-------CCc----eEEEEeccceEEEeecch
Confidence 67999995 5888888776666 79999998 553 788889999999999874
No 372
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.98 E-value=11 Score=41.74 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=26.8
Q ss_pred eeeeccCCCCcEEEEEEecccCCCCEEEEEEc-CCcEEEEEcC
Q 001391 124 LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDIS 165 (1088)
Q Consensus 124 ~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~-Dg~V~iWd~~ 165 (1088)
.++.+..|-..-+.|+|+| |++.|+.+-. .+.|.-|++.
T Consensus 154 ~~~l~~~~~~~~NGla~Sp---Dg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 154 VVRLLDDDLTIPNGLAFSP---DGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred EEEeecCcEEecCceEECC---CCCEEEEEeCCCCeEEEEecC
Confidence 3344444445567899999 9988877744 4778887775
No 373
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=92.98 E-value=32 Score=43.13 Aligned_cols=105 Identities=10% Similarity=0.028 Sum_probs=58.5
Q ss_pred CeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCC
Q 001391 485 DWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESS 564 (1088)
Q Consensus 485 ~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~ 564 (1088)
+.+.+| ....+++|++...++.++...+. +...+......+..+++|+....+..+..+... +.
T Consensus 946 ~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~---------~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~--n~---- 1009 (1205)
T KOG1898|consen 946 GRVLAG-VGRFLRLYDLGKKKLLRKCELKF---------IPNRISSIQTYGARIVVGDIQESVHFVRYRRED--NQ---- 1009 (1205)
T ss_pred CEEEEe-cccEEEEeeCChHHHHhhhhhcc---------CceEEEEEeecceEEEEeeccceEEEEEEecCC--Ce----
Confidence 444444 44689999998877665544332 111122233456677777766666554433211 00
Q ss_pred cccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcc
Q 001391 565 KTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (1088)
Q Consensus 565 ~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~ 612 (1088)
+..-....-...|+++.+- |...+|.|++-|++.+-.++..
T Consensus 1010 ------l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1010 ------LIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred ------EEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECCCc
Confidence 1111111223345665444 5567889999999999887754
No 374
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.71 E-value=19 Score=39.85 Aligned_cols=118 Identities=10% Similarity=-0.068 Sum_probs=69.5
Q ss_pred eeeeEEEeCCCCCEEEEEEcCCCCEEEEE-ECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEE
Q 001391 246 AVNLFRLVGHEGSIFRIEWSSCGSKLVSV-SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFII 322 (1088)
Q Consensus 246 ~~~~~~~~gh~~~V~~v~~sp~g~~l~s~-s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~ 322 (1088)
+.....+.+|-..-++|+||||++.+..+ +..+.|.-|++........ .+... .......+..-.++.. +.+-+
T Consensus 152 g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~--~~~~~-~~~~~~~G~PDG~~vDadG~lw~ 228 (307)
T COG3386 152 GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIG--GRRGF-VDFDEEPGLPDGMAVDADGNLWV 228 (307)
T ss_pred CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccC--CcceE-EEccCCCCCCCceEEeCCCCEEE
Confidence 44455555556667889999999876655 4457777777763111000 01100 1222233444455555 44544
Q ss_pred EEeCCC-cEEEEcCCCceeEEEcccCCCCeEEEEEc-CCCCEEEEEe
Q 001391 323 TAGEDC-TCRVWGSDGKQLKMIKEHIGRGIWRCLYD-SLSSLLVTAG 367 (1088)
Q Consensus 323 sg~~Dg-~i~vWd~~~~~~~~~~~h~~~~V~~l~~~-~dg~~l~tg~ 367 (1088)
++..+| .|.+|+.+|+++..+..... .+++++|- ++.+.|...+
T Consensus 229 ~a~~~g~~v~~~~pdG~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 229 AAVWGGGRVVRFNPDGKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred ecccCCceEEEECCCCcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 444443 89999999999999887755 58888884 4555444333
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=92.50 E-value=10 Score=46.05 Aligned_cols=107 Identities=10% Similarity=0.059 Sum_probs=61.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEc---CCCcccCCCCceeeeceeee-ccCcceEEEEEC-CCEEEEEeCCCc
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEV---RAEYWKDSDSIEEVGSSVLY-GHNARVWDCCLT-DSFIITAGEDCT 329 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~---~~~~~~~~~~~~~i~~~~~~-~h~~~I~~v~~~-~~~l~sg~~Dg~ 329 (1088)
..+.|..+.|+|||.+++... ++.|.+=-+ ..+. .+...+..+. +-...+.++.|. +..|+.+..++.
T Consensus 446 ~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~------~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~ 518 (591)
T PRK13616 446 VPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ------YALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPE 518 (591)
T ss_pred cCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc------eeecccEEeecccCCccccceEecCCEEEEEecCCC
Confidence 356799999999999987766 467766333 2221 1111111121 222335778887 555667666666
Q ss_pred EEEEcC--CCceeEEEcc--cCCCCeEEEEEcCCCCEEEEEeCCCC
Q 001391 330 CRVWGS--DGKQLKMIKE--HIGRGIWRCLYDSLSSLLVTAGFDSA 371 (1088)
Q Consensus 330 i~vWd~--~~~~~~~~~~--h~~~~V~~l~~~~dg~~l~tg~~Dg~ 371 (1088)
-.+|.+ +|.....+.. ... ++.+++-+++ .++....+|.
T Consensus 519 ~~v~~v~vDG~~~~~~~~~n~~~-~v~~vaa~~~--~iyv~~~~g~ 561 (591)
T PRK13616 519 HPVWYVNLDGSNSDALPSRNLSA-PVVAVAASPS--TVYVTDARAV 561 (591)
T ss_pred CceEEEecCCccccccCCCCccC-ceEEEecCCc--eEEEEcCCce
Confidence 666665 6655443332 133 5778877763 3555566663
No 376
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.49 E-value=0.7 Score=53.61 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=55.4
Q ss_pred CCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEE-EEEEcCCC
Q 001391 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIF-RIEWSSCG 268 (1088)
Q Consensus 190 s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~-~v~~sp~g 268 (1088)
+|.-.++|.++.+|.|.+..+. -+.+..+.-|...++ +++|.|||
T Consensus 29 nP~~dLiA~~t~~gelli~R~n----------------------------------~qRlwtip~p~~~v~~sL~W~~DG 74 (665)
T KOG4640|consen 29 NPKMDLIATRTEKGELLIHRLN----------------------------------WQRLWTIPIPGENVTASLCWRPDG 74 (665)
T ss_pred cCccchhheeccCCcEEEEEec----------------------------------cceeEeccCCCCccceeeeecCCC
Confidence 5777899999999999998876 344556665666666 99999999
Q ss_pred CEEEEEECCCcEEEEEcCCCc
Q 001391 269 SKLVSVSDDRSARIWEVRAEY 289 (1088)
Q Consensus 269 ~~l~s~s~Dg~v~iWd~~~~~ 289 (1088)
+.++.|-.||+|++.|+.++.
T Consensus 75 kllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 75 KLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred CEEEEEecCCeEEEEEccCCC
Confidence 999999999999999999864
No 377
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.37 E-value=23 Score=39.93 Aligned_cols=62 Identities=19% Similarity=0.177 Sum_probs=41.6
Q ss_pred CCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEE
Q 001391 533 LGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLV 605 (1088)
Q Consensus 533 ~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~ 605 (1088)
..|.++++.-..+.|....++.... ..-...+......+++.+++.|||.+.++-+.+|.|+
T Consensus 269 ~~g~~~~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 269 YRGDLFVADYGGGRIWRLDLDEDGS-----------VTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp GTTEEEEEETTTTEEEEEEEETTEE-----------EEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred ccCcEEEecCCCCEEEEEeeecCCC-----------ccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 3677888777777888777753321 1111222234566899999999999999999999875
No 378
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=92.25 E-value=24 Score=39.88 Aligned_cols=89 Identities=12% Similarity=0.070 Sum_probs=45.7
Q ss_pred CEEEEEe-C--CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCC
Q 001391 36 PFLLAGS-G--SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNS 112 (1088)
Q Consensus 36 ~~laag~-d--~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~ 112 (1088)
++|.++. + ..+.+.|+.+++...--.+ .+....+...+ |+++ .++-+..+++++-.|+++..
T Consensus 49 kllF~s~~dg~~nly~lDL~t~~i~QLTdg-~g~~~~g~~~s-------~~~~---~~~Yv~~~~~l~~vdL~T~e---- 113 (386)
T PF14583_consen 49 KLLFASDFDGNRNLYLLDLATGEITQLTDG-PGDNTFGGFLS-------PDDR---ALYYVKNGRSLRRVDLDTLE---- 113 (386)
T ss_dssp EEEEEE-TTSS-EEEEEETTT-EEEE---S-S-B-TTT-EE--------TTSS---EEEEEETTTEEEEEETTT------
T ss_pred EEEEEeccCCCcceEEEEcccCEEEECccC-CCCCccceEEe-------cCCC---eEEEEECCCeEEEEECCcCc----
Confidence 5555555 3 6899999999876544333 33335566777 5541 44455667888888887532
Q ss_pred CCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEE
Q 001391 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1088)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la 151 (1088)
....+....+++-...+... .|+..++
T Consensus 114 -----------~~~vy~~p~~~~g~gt~v~n-~d~t~~~ 140 (386)
T PF14583_consen 114 -----------ERVVYEVPDDWKGYGTWVAN-SDCTKLV 140 (386)
T ss_dssp -----------EEEEEE--TTEEEEEEEEE--TTSSEEE
T ss_pred -----------EEEEEECCcccccccceeeC-CCccEEE
Confidence 22334445677766777542 2555543
No 379
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=92.15 E-value=0.049 Score=62.57 Aligned_cols=181 Identities=13% Similarity=0.136 Sum_probs=108.5
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE----cCCcEEEEEcCCCce-
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC----SDNSIRVWDISNSSI- 169 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs----~Dg~V~iWd~~~~~~- 169 (1088)
.+|.|.+-.+..... .-.-..++|....++++|++. |...||.|- .|-.+.|||+.++-.
T Consensus 78 atG~I~l~s~r~~hd-------------Ss~E~tp~~ar~Ct~lAwneL--Dtn~LAagldkhrnds~~~Iwdi~s~ltv 142 (783)
T KOG1008|consen 78 ATGNISLLSVRHPHD-------------SSAEVTPGYARPCTSLAWNEL--DTNHLAAGLDKHRNDSSLKIWDINSLLTV 142 (783)
T ss_pred ccCceEEeecCCccc-------------ccceecccccccccccccccc--cHHHHHhhhhhhcccCCccceecccccCC
Confidence 378888888775431 111233577888999999984 556777763 366799999987722
Q ss_pred ---EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccce
Q 001391 170 ---ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (1088)
Q Consensus 170 ---~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 246 (1088)
...+.........++++ ..+..+|.+|.....+.++|++.
T Consensus 143 Pke~~~fs~~~l~gqns~cw---lrd~klvlaGm~sr~~~ifdlRq---------------------------------- 185 (783)
T KOG1008|consen 143 PKESPLFSSSTLDGQNSVCW---LRDTKLVLAGMTSRSVHIFDLRQ---------------------------------- 185 (783)
T ss_pred CccccccccccccCcccccc---ccCcchhhcccccchhhhhhhhh----------------------------------
Confidence 11111111111113333 25677888888888999999871
Q ss_pred eeeEEEeCCCCCEEEEEEcC-CCCEEEEEECCCcEEEEEc-CCCcccCCCCceeeece--eeeccCcceEEEEEC---CC
Q 001391 247 VNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEV-RAEYWKDSDSIEEVGSS--VLYGHNARVWDCCLT---DS 319 (1088)
Q Consensus 247 ~~~~~~~gh~~~V~~v~~sp-~g~~l~s~s~Dg~v~iWd~-~~~~~~~~~~~~~i~~~--~~~~h~~~I~~v~~~---~~ 319 (1088)
.......-.+..+.++...| .+.++++-+ |+.|-+||. .+-+ .++... .......++..++|. ..
T Consensus 186 s~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnie-------npl~~i~~~~N~~~~~l~~~aycPtrtg 257 (783)
T KOG1008|consen 186 SLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIE-------NPLQIILRNENKKPKQLFALAYCPTRTG 257 (783)
T ss_pred hhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhc-------cHHHHHhhCCCCcccceeeEEeccCCcc
Confidence 00111111234566788888 667777766 899999994 2211 111100 111112357888887 46
Q ss_pred EEEEEeCC-CcEEEEcC
Q 001391 320 FIITAGED-CTCRVWGS 335 (1088)
Q Consensus 320 ~l~sg~~D-g~i~vWd~ 335 (1088)
++++...| ++|+.+++
T Consensus 258 lla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 258 LLAVLSRDSITIRLYDI 274 (783)
T ss_pred hhhhhccCcceEEEecc
Confidence 67777665 78999997
No 380
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=91.78 E-value=8.7 Score=46.68 Aligned_cols=215 Identities=14% Similarity=0.170 Sum_probs=107.3
Q ss_pred eEEEEEC-C------CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcC-----
Q 001391 89 FEVALFG-E------KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD----- 156 (1088)
Q Consensus 89 ~~la~~g-d------~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~D----- 156 (1088)
.+++++| . ..+..+|..... ......+.. ...-.++++. ++...++||.|
T Consensus 286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~-------------w~~~a~m~~-~r~~~~~~~~----~~~lYv~GG~~~~~~~ 347 (571)
T KOG4441|consen 286 KLVAVGGYNRQGQSLRSVECYDPKTNE-------------WSSLAPMPS-PRCRVGVAVL----NGKLYVVGGYDSGSDR 347 (571)
T ss_pred eEEEECCCCCCCcccceeEEecCCcCc-------------EeecCCCCc-ccccccEEEE----CCEEEEEccccCCCcc
Confidence 5666665 2 457777776542 333333332 2224455554 56788889888
Q ss_pred -CcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCe-----EEEEEeccCccccCCCCCCCccCCCC
Q 001391 157 -NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNE-----IIVWKVDWEHVAPLLNSPEGNHAHGS 230 (1088)
Q Consensus 157 -g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~-----I~vwd~~~~~~~~~~~~~~~~s~~~~ 230 (1088)
.++..||..+.+......-...-...+++. -++.+.|.|+.||. +-.||..+++
T Consensus 348 l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~----l~g~iYavGG~dg~~~l~svE~YDp~~~~---------------- 407 (571)
T KOG4441|consen 348 LSSVERYDPRTNQWTPVAPMNTKRSDFGVAV----LDGKLYAVGGFDGEKSLNSVECYDPVTNK---------------- 407 (571)
T ss_pred cceEEEecCCCCceeccCCccCccccceeEE----ECCEEEEEeccccccccccEEEecCCCCc----------------
Confidence 357788887776544222222111222222 35778888888865 4455554111
Q ss_pred CCCCceeEecccccceeeeEEEeCCCCCEEEEEE-cCCCCEEEEEECCC------cEEEEEcCCCcccCCCCceeeecee
Q 001391 231 SSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEW-SSCGSKLVSVSDDR------SARIWEVRAEYWKDSDSIEEVGSSV 303 (1088)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~-sp~g~~l~s~s~Dg------~v~iWd~~~~~~~~~~~~~~i~~~~ 303 (1088)
|.. +..+. ....+.+. .-+|...+.|+.++ ++..||..++.. ..+. .
T Consensus 408 ---------W~~------va~m~---~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W------~~~~--~ 461 (571)
T KOG4441|consen 408 ---------WTP------VAPML---TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW------TLIA--P 461 (571)
T ss_pred ---------ccc------cCCCC---cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce------eecC--C
Confidence 111 11111 11111111 12566677777553 567788887655 2221 1
Q ss_pred eeccCcceEEEEECCCEEEEEeCCCc-----EEEEcCCCceeEEEc---ccCCCCeEEEEEcCCCCEEEEEeCCC
Q 001391 304 LYGHNARVWDCCLTDSFIITAGEDCT-----CRVWGSDGKQLKMIK---EHIGRGIWRCLYDSLSSLLVTAGFDS 370 (1088)
Q Consensus 304 ~~~h~~~I~~v~~~~~~l~sg~~Dg~-----i~vWd~~~~~~~~~~---~h~~~~V~~l~~~~dg~~l~tg~~Dg 370 (1088)
+..-......+.+.+.+.+.||.|+. +..+|.....-..+. .... .+ .++. -++.+.+.||.||
T Consensus 462 M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs-~~-g~~~-~~~~ly~vGG~~~ 533 (571)
T KOG4441|consen 462 MNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRS-AV-GVVV-LGGKLYAVGGFDG 533 (571)
T ss_pred cccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccc-cc-cEEE-ECCEEEEEecccC
Confidence 11111222244445778888888873 566777433333222 1221 12 2222 2456677888775
No 381
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.31 E-value=34 Score=39.85 Aligned_cols=147 Identities=17% Similarity=0.144 Sum_probs=79.1
Q ss_pred eEEecCCCce---eeeeEEEEEeccCCCCCCCCEEEEEe--C----CeEEEEECCCCeeEEEEeeeCCcceEEEEecccc
Q 001391 7 SEWRLDVGQY---LGEISALCFVHLPSHLSSLPFLLAGS--G----SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFIN 77 (1088)
Q Consensus 7 ~iWdl~~g~~---~~~V~~v~fs~~pd~~~~~~~laag~--d----~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~ 77 (1088)
.|.|+..... .-.+...++| || +++||-+. + ..|+|+|+++|+.+...- ....-..+.|.
T Consensus 110 vllD~n~l~~~~~~~~~~~~~~S--pd----g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i--~~~~~~~~~W~--- 178 (414)
T PF02897_consen 110 VLLDPNELAKDGGYVSLGGFSVS--PD----GKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI--ENPKFSSVSWS--- 178 (414)
T ss_dssp EEEEGGGGSTTSS-EEEEEEEET--TT----SSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE--EEEESEEEEEC---
T ss_pred EEEcchHhhccCceEEeeeeeEC--CC----CCEEEEEecCCCCceEEEEEEECCCCcCcCCcc--cccccceEEEe---
Confidence 4556554432 2244567889 99 88888764 2 469999999998765321 11112338888
Q ss_pred cccCCCccceeeEEEEE-CC----------CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC
Q 001391 78 CTEGSVSTRVTFEVALF-GE----------KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1088)
Q Consensus 78 ~~~~~d~~~~~~~la~~-gd----------~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d 146 (1088)
+|++ .++.+. .+ ..|..|++.+... .-.++.......-+...+..++ |
T Consensus 179 ----~d~~---~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~-----------~d~lvfe~~~~~~~~~~~~~s~---d 237 (414)
T PF02897_consen 179 ----DDGK---GFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQS-----------EDELVFEEPDEPFWFVSVSRSK---D 237 (414)
T ss_dssp ----TTSS---EEEEEECSTTTSS-CCGCCEEEEEEETTS-GG-----------G-EEEEC-TTCTTSEEEEEE-T---T
T ss_pred ----CCCC---EEEEEEeCcccccccCCCCcEEEEEECCCChH-----------hCeeEEeecCCCcEEEEEEecC---c
Confidence 6763 444443 22 2356666654320 0123333333333467888888 9
Q ss_pred CCEEEEEEc---C-CcEEEEEcCCC----ceEEEeccCCceeEEEEe
Q 001391 147 NRSLAIGCS---D-NSIRVWDISNS----SIILEVHSPERCLLYSMK 185 (1088)
Q Consensus 147 ~~~lasgs~---D-g~V~iWd~~~~----~~~~~~~~~~~~~~~s~~ 185 (1088)
+++|+.... + ..+.+.++..+ .....+..+.....+.+.
T Consensus 238 ~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 238 GRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp SSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred ccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 998766433 2 34777787764 234444444444444443
No 382
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=91.14 E-value=32 Score=39.58 Aligned_cols=193 Identities=13% Similarity=0.135 Sum_probs=116.2
Q ss_pred EEEEeccCCCCCCCCEEEE--EeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC--CC
Q 001391 22 ALCFVHLPSHLSSLPFLLA--GSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG--EK 97 (1088)
Q Consensus 22 ~v~fs~~pd~~~~~~~laa--g~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g--d~ 97 (1088)
.++++ ++ +..+.+ ..+..|.+.|..+.+.++...... .-++++++ ++++ ..+++-.+ ++
T Consensus 78 ~i~v~--~~----~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~-------~~~~--~vYV~n~~~~~~ 140 (381)
T COG3391 78 GVAVN--PA----GNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVD-------PDGK--YVYVANAGNGNN 140 (381)
T ss_pred ceeeC--CC----CCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEEC-------CCCC--EEEEEecccCCc
Confidence 56666 66 443333 335999999988888888877644 46889998 6663 13333342 56
Q ss_pred EEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEE-EcCCcEEEEEcCCCceEE-E---
Q 001391 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSSIIL-E--- 172 (1088)
Q Consensus 98 ~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg-s~Dg~V~iWd~~~~~~~~-~--- 172 (1088)
++.+.|-.+. +.......-..+ ..+++.| +++.+++. ..++.|.+.|........ .
T Consensus 141 ~vsvid~~t~---------------~~~~~~~vG~~P-~~~a~~p---~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~ 201 (381)
T COG3391 141 TVSVIDAATN---------------KVTATIPVGNTP-TGVAVDP---DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGS 201 (381)
T ss_pred eEEEEeCCCC---------------eEEEEEecCCCc-ceEEECC---CCCeEEEEecCCCeEEEEeCCCcceecccccc
Confidence 7777766542 233332222233 8899999 99866655 478999999977665553 1
Q ss_pred -eccCCceeEEEEeeecCCCCCcEEEEEecC---CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee
Q 001391 173 -VHSPERCLLYSMKLWGDNLEALRIASGTIY---NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1088)
Q Consensus 173 -~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d---g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 248 (1088)
...... -+.+.+ ++++..+...... +.+...|.. ....
T Consensus 202 ~~~~~~~--P~~i~v---~~~g~~~yV~~~~~~~~~v~~id~~---------------------------------~~~v 243 (381)
T COG3391 202 LVGVGTG--PAGIAV---DPDGNRVYVANDGSGSNNVLKIDTA---------------------------------TGNV 243 (381)
T ss_pred ccccCCC--CceEEE---CCCCCEEEEEeccCCCceEEEEeCC---------------------------------CceE
Confidence 111111 111222 4677755554333 477777766 2222
Q ss_pred eEE--EeCCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCc
Q 001391 249 LFR--LVGHEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEY 289 (1088)
Q Consensus 249 ~~~--~~gh~~~V~~v~~sp~g~~l~s~s-~Dg~v~iWd~~~~~ 289 (1088)
... ..+-. ....+..+|+|+.+.... ..+.+.+-|..+..
T Consensus 244 ~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 244 TATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred EEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 222 11222 567789999999887764 44788888877743
No 383
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=90.90 E-value=27 Score=37.95 Aligned_cols=253 Identities=12% Similarity=0.105 Sum_probs=120.9
Q ss_pred CCEEEEEeC-CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCC
Q 001391 35 LPFLLAGSG-SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (1088)
Q Consensus 35 ~~~laag~d-~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~ 113 (1088)
+..|+.|++ | |.+|+.+.......... ...|..+... ++- ..+++-.|+.+.++++..-......
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl-------~~~----~~llvLsd~~l~~~~L~~l~~~~~~ 72 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVL-------PEL----NLLLVLSDGQLYVYDLDSLEPVSTS 72 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEe-------ccc----CEEEEEcCCccEEEEchhhcccccc
Confidence 678888885 6 99999943332222222 1248999988 443 3444445699999999853311100
Q ss_pred CCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC-----ceEEEeccCCceeEEEEeeec
Q 001391 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS-----SIILEVHSPERCLLYSMKLWG 188 (1088)
Q Consensus 114 ~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~-----~~~~~~~~~~~~~~~s~~~~~ 188 (1088)
... .................+...+..........|+++ ..+.|.+|..... +...++..+. ...++.+.
T Consensus 73 ~~~-~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp~--~~~~i~~~- 147 (275)
T PF00780_consen 73 APL-AFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLPD--PPSSIAFL- 147 (275)
T ss_pred ccc-cccccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcCC--CcEEEEEe-
Confidence 000 000000000011122334444411111133455554 4568998887653 3455555553 34455553
Q ss_pred CCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCC
Q 001391 189 DNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG 268 (1088)
Q Consensus 189 ~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g 268 (1088)
+..++.|.. ....+.|+.+....... ........+........++..+.. +++
T Consensus 148 ----~~~i~v~~~-~~f~~idl~~~~~~~l~---------------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 200 (275)
T PF00780_consen 148 ----GNKICVGTS-KGFYLIDLNTGSPSELL---------------------DPSDSSSSFKSRNSSSKPLGIFQL-SDN 200 (275)
T ss_pred ----CCEEEEEeC-CceEEEecCCCCceEEe---------------------CccCCcchhhhcccCCCceEEEEe-CCc
Confidence 456666654 34667777632211100 000000000001111222333333 345
Q ss_pred CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEEccc
Q 001391 269 SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEH 346 (1088)
Q Consensus 269 ~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h 346 (1088)
.+|++. |..-.+-|...... + . ....-...+.++++...+|+..+.+ .|-||++ +++.++.+...
T Consensus 201 e~Ll~~--~~~g~fv~~~G~~~------r--~--~~i~W~~~p~~~~~~~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 201 EFLLCY--DNIGVFVNKNGEPS------R--K--STIQWSSAPQSVAYSSPYLIAFSSN-SIEVRSLETGELVQTIPLP 266 (275)
T ss_pred eEEEEe--cceEEEEcCCCCcC------c--c--cEEEcCCchhEEEEECCEEEEECCC-EEEEEECcCCcEEEEEECC
Confidence 666543 33344445443211 1 1 1111223566777777777777665 4999999 88888887654
No 384
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=90.63 E-value=0.76 Score=34.73 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=29.1
Q ss_pred CCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc
Q 001391 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (1088)
Q Consensus 132 ~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~ 168 (1088)
...|.+++|+| ..++||.|..||.|.++.+ +++
T Consensus 11 ~~~v~~~~w~P---~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCP---TMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECC---CCCEEEEEECCCeEEEEEC-CCc
Confidence 35699999999 9999999999999999998 443
No 385
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.92 E-value=20 Score=38.11 Aligned_cols=107 Identities=13% Similarity=0.073 Sum_probs=75.9
Q ss_pred cEEEEEEecccCCCCEEEEEEcCCc-EEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEec-----CCeEEE
Q 001391 134 WVFDVCFLKVCNGNRSLAIGCSDNS-IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI-----YNEIIV 207 (1088)
Q Consensus 134 ~I~~v~f~p~~~d~~~lasgs~Dg~-V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~-----dg~I~v 207 (1088)
+-..|+|+|. ....++.+-.-|+ ..++|....+....+...+.-..|.--. +++||.+|++.-. .|.|-|
T Consensus 69 R~Hgi~~~p~--~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGv--fs~dG~~LYATEndfd~~rGViGv 144 (366)
T COG3490 69 RGHGIAFHPA--LPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGV--FSPDGRLLYATENDFDPNRGVIGV 144 (366)
T ss_pred ccCCeecCCC--CcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccc--cCCCCcEEEeecCCCCCCCceEEE
Confidence 3456888882 3345666666665 5689999888877776665544544322 3688998887543 377889
Q ss_pred EEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC
Q 001391 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD 276 (1088)
Q Consensus 208 wd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~ 276 (1088)
||.+ ...+.+.++..|.-....+.+.+||+.++.+..
T Consensus 145 Yd~r--------------------------------~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 145 YDAR--------------------------------EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred Eecc--------------------------------cccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence 9987 245667788888888899999999999887643
No 386
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=89.90 E-value=1 Score=46.06 Aligned_cols=102 Identities=14% Similarity=0.054 Sum_probs=65.9
Q ss_pred CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcC-CCceeEEE
Q 001391 268 GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQLKMI 343 (1088)
Q Consensus 268 g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~-~~~~~~~~ 343 (1088)
+..++.|+.+|.|.+|+...... ... ....-...|.++-.. +.+..+++.||.||.|+. .++.+...
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~-------~~d--~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~ 140 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGA-------HSD--RVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV 140 (238)
T ss_pred CceEEeecccceEEEecCCccch-------HHH--hhhcccccceeccccccccceeEEeccCCceeeeccccCceeeee
Confidence 46789999999999998873211 000 111111223332222 358899999999999999 66777666
Q ss_pred cccCCCCeEEEEEcCCCCEEEEE--eCCCCEEEEEcC
Q 001391 344 KEHIGRGIWRCLYDSLSSLLVTA--GFDSAIKVHQFQ 378 (1088)
Q Consensus 344 ~~h~~~~V~~l~~~~dg~~l~tg--~~Dg~I~iwd~~ 378 (1088)
..|...++..+..+..+..|+.. +.|..++.|++.
T Consensus 141 g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 141 GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 66764456666666666666666 777777777773
No 387
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.81 E-value=3.2 Score=51.38 Aligned_cols=100 Identities=18% Similarity=0.288 Sum_probs=66.2
Q ss_pred EEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce
Q 001391 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1088)
Q Consensus 90 ~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~ 169 (1088)
++++++.+.+-..|+... +.+...-..-..+|.+++|+. +|..++.|-.+|.|.+||+..++.
T Consensus 102 ivi~Ts~ghvl~~d~~~n--------------L~~~~~ne~v~~~Vtsvafn~---dg~~l~~G~~~G~V~v~D~~~~k~ 164 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGN--------------LGPLHQNERVQGPVTSVAFNQ---DGSLLLAGLGDGHVTVWDMHRAKI 164 (1206)
T ss_pred EEEEcCchhhhhhhhhcc--------------cchhhcCCccCCcceeeEecC---CCceeccccCCCcEEEEEccCCcc
Confidence 334444577777776631 111122223347899999999 999999999999999999999888
Q ss_pred EEEecc---CCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEecc
Q 001391 170 ILEVHS---PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (1088)
Q Consensus 170 ~~~~~~---~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~ 212 (1088)
++.+.. +...++..... .++..+.++..-|. +|.+..
T Consensus 165 l~~i~e~~ap~t~vi~v~~t----~~nS~llt~D~~Gs--f~~lv~ 204 (1206)
T KOG2079|consen 165 LKVITEHGAPVTGVIFVGRT----SQNSKLLTSDTGGS--FWKLVF 204 (1206)
T ss_pred eeeeeecCCccceEEEEEEe----CCCcEEEEccCCCc--eEEEEe
Confidence 776653 33444443332 33447888777776 777653
No 388
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.75 E-value=1.5 Score=54.13 Aligned_cols=74 Identities=14% Similarity=0.078 Sum_probs=56.1
Q ss_pred ccCcceEEEEECCCEEEEEeCCCcEEEEcCCCceeE-EEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 306 GHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLK-MIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 306 ~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~~~~~~~-~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
.....+.+.+.-...++.|+..|.+...|.++..-. .-..+...+|++++|+.+|.+++.|-.+|.|.+||...
T Consensus 87 ~~~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~ 161 (1206)
T KOG2079|consen 87 DIAAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR 161 (1206)
T ss_pred CCCcceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC
Confidence 344556666666778899999999999998664221 11223334899999999999999999999999999954
No 389
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=89.69 E-value=20 Score=39.40 Aligned_cols=155 Identities=9% Similarity=0.036 Sum_probs=77.6
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEeC-CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGSG-SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~d-~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g 95 (1088)
.+.+..+..+ +| +++|+++.. ....-||.-...- ....-....+|..|.|+ |++ .+.....
T Consensus 144 ~gs~~~~~r~--~d----G~~vavs~~G~~~~s~~~G~~~w-~~~~r~~~~riq~~gf~-------~~~----~lw~~~~ 205 (302)
T PF14870_consen 144 SGSINDITRS--SD----GRYVAVSSRGNFYSSWDPGQTTW-QPHNRNSSRRIQSMGFS-------PDG----NLWMLAR 205 (302)
T ss_dssp ---EEEEEE---TT----S-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE--------TTS-----EEEEET
T ss_pred cceeEeEEEC--CC----CcEEEEECcccEEEEecCCCccc-eEEccCccceehhceec-------CCC----CEEEEeC
Confidence 4678888888 88 899999995 5556787542211 11222234589999999 776 5666667
Q ss_pred CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEecc
Q 001391 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS 175 (1088)
Q Consensus 96 d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~ 175 (1088)
++.|+.=+..... +.+ .+.+..+..-.-.+.++++.+ ++...|+|+ .|+ .+...+.|+.-.+...
T Consensus 206 Gg~~~~s~~~~~~---~~w-------~~~~~~~~~~~~~~ld~a~~~---~~~~wa~gg-~G~-l~~S~DgGktW~~~~~ 270 (302)
T PF14870_consen 206 GGQIQFSDDPDDG---ETW-------SEPIIPIKTNGYGILDLAYRP---PNEIWAVGG-SGT-LLVSTDGGKTWQKDRV 270 (302)
T ss_dssp TTEEEEEE-TTEE---EEE----------B-TTSS--S-EEEEEESS---SS-EEEEES-TT--EEEESSTTSS-EE-GG
T ss_pred CcEEEEccCCCCc---ccc-------ccccCCcccCceeeEEEEecC---CCCEEEEeC-Ccc-EEEeCCCCccceECcc
Confidence 8888887722110 000 011111112223489999998 877777665 443 3445566666555543
Q ss_pred --CCceeEEEEeeecCCCCCcEEEEEecCCeEEEE
Q 001391 176 --PERCLLYSMKLWGDNLEALRIASGTIYNEIIVW 208 (1088)
Q Consensus 176 --~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vw 208 (1088)
+....+|.+.|.. ...-.+-+.+|.|.-|
T Consensus 271 ~~~~~~n~~~i~f~~----~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 271 GENVPSNLYRIVFVN----PDKGFVLGQDGVLLRY 301 (302)
T ss_dssp GTTSSS---EEEEEE----TTEEEEE-STTEEEEE
T ss_pred ccCCCCceEEEEEcC----CCceEEECCCcEEEEe
Confidence 4455678887742 2333444567777655
No 390
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=89.21 E-value=50 Score=38.46 Aligned_cols=199 Identities=14% Similarity=0.124 Sum_probs=97.2
Q ss_pred EEEEEEcCCCCEEEEE-ECCC----cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEE-EEEeCC---
Q 001391 259 IFRIEWSSCGSKLVSV-SDDR----SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFI-ITAGED--- 327 (1088)
Q Consensus 259 V~~v~~sp~g~~l~s~-s~Dg----~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l-~sg~~D--- 327 (1088)
+....++|+|++++-+ +..| .+++.|+.+++. +.. .+.. .....+.|. +..| .+...+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~--------l~d-~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~ 194 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF--------LPD-GIEN--PKFSSVSWSDDGKGFFYTRFDEDQR 194 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE--------EEE-EEEE--EESEEEEECTTSSEEEEEECSTTTS
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC--------cCC-cccc--cccceEEEeCCCCEEEEEEeCcccc
Confidence 4467899999988754 3333 599999999643 210 1111 112238887 3444 443322
Q ss_pred -------CcEEEEcC-CCce--eEEEcccCCCC-eEEEEEcCCCCEEEEEeCC-CC---EEEEEcCCCCCCcccCCcccc
Q 001391 328 -------CTCRVWGS-DGKQ--LKMIKEHIGRG-IWRCLYDSLSSLLVTAGFD-SA---IKVHQFQAFLPGSLESHPEAK 392 (1088)
Q Consensus 328 -------g~i~vWd~-~~~~--~~~~~~h~~~~-V~~l~~~~dg~~l~tg~~D-g~---I~iwd~~~~~~~~~~~~~~~~ 392 (1088)
..|+.|.+ ++.. ...+....... ...+..++|+++|+..... .. +.+.++.....
T Consensus 195 ~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~---------- 264 (414)
T PF02897_consen 195 TSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS---------- 264 (414)
T ss_dssp S-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT----------
T ss_pred cccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC----------
Confidence 23777777 3322 23444444422 5678889999987654433 22 44445532100
Q ss_pred ccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecC----CeEEEEEeccCCcceeEEeeeecC-Ccce
Q 001391 393 EFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNH----GYLYHTKLCDMDSVNWNKILQVSE-GMPI 467 (1088)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~----g~i~~~~~~~~~~~~~~~~~~~~~-~~~i 467 (1088)
. ......+......+....-..++.+++.|+. +.|+.+++.+.....|..++-.+. ...+
T Consensus 265 ---~------------~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l 329 (414)
T PF02897_consen 265 ---P------------DAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSL 329 (414)
T ss_dssp ---S------------S-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEE
T ss_pred ---C------------cCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeE
Confidence 0 0001111111112222222225577777654 457777776665555654433332 3355
Q ss_pred EEEecCCCCCCCcCCCCCeEEEecCCC--CEEEEEEc
Q 001391 468 ICMDLLSNEPKYPCGIDDWVALGDGKG--NMTIVRVV 502 (1088)
Q Consensus 468 ~~l~~~~~~~~~s~~~~~~la~g~~dg--~I~iw~~~ 502 (1088)
..+.+.. +.+++....++ .|+++++.
T Consensus 330 ~~~~~~~---------~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 330 EDVSLFK---------DYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEEET---------TEEEEEEEETTEEEEEEEETT
T ss_pred EEEEEEC---------CEEEEEEEECCccEEEEEECC
Confidence 5555532 24666666666 45666665
No 391
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=89.04 E-value=50 Score=38.20 Aligned_cols=156 Identities=13% Similarity=0.170 Sum_probs=89.1
Q ss_pred CCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEc---C-
Q 001391 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS---S- 266 (1088)
Q Consensus 191 ~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~s---p- 266 (1088)
.+...|+.|+..|.++|++....+..+ ...+. -..-+.+|..|..- +
T Consensus 35 ~~~d~IivGS~~G~LrIy~P~~~~~~~----------------------------~~lll-E~~l~~PILqv~~G~F~s~ 85 (418)
T PF14727_consen 35 SGSDKIIVGSYSGILRIYDPSGNEFQP----------------------------EDLLL-ETQLKDPILQVECGKFVSG 85 (418)
T ss_pred CCccEEEEeccccEEEEEccCCCCCCC----------------------------ccEEE-EEecCCcEEEEEeccccCC
Confidence 345789999999999999986221111 11111 12234667766543 2
Q ss_pred CCCEEEEEECCCcEEEEEcCCCccc-CCCCceeeeceeeeccCcc--eEEEEE---C----CCEEEEEeCCCcEEEEcCC
Q 001391 267 CGSKLVSVSDDRSARIWEVRAEYWK-DSDSIEEVGSSVLYGHNAR--VWDCCL---T----DSFIITAGEDCTCRVWGSD 336 (1088)
Q Consensus 267 ~g~~l~s~s~Dg~v~iWd~~~~~~~-~~~~~~~i~~~~~~~h~~~--I~~v~~---~----~~~l~sg~~Dg~i~vWd~~ 336 (1088)
.....+..=.-+.+.+|.+...... .....-.+. ..+.|.-. ...++. . ..+|..=+.||.+.+++-+
T Consensus 86 ~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~L~--~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe 163 (418)
T PF14727_consen 86 SEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQYQLE--LIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQE 163 (418)
T ss_pred CCcceEEEecCCEEEEEEEEecCCCcccCcEEEEE--EEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCC
Confidence 1222333345677888887432210 000011222 34444332 223332 2 2678889999999999986
Q ss_pred CceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 337 GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 337 ~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
.-....+-...- ---.++|.+....+++++.+..+..|...
T Consensus 164 ~~~f~~~lp~~l-lPgPl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 164 SFAFSRFLPDFL-LPGPLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred cEEEEEEcCCCC-CCcCeEEeecCCEEEEecCceeEEEecHH
Confidence 555433322211 12357788888889999999999999873
No 392
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.76 E-value=3.5 Score=47.08 Aligned_cols=124 Identities=15% Similarity=0.082 Sum_probs=77.7
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCC--E-----EEEEEcCCcEEEEEcCCC-c-eEEEeccCC--ceeEEEEeeecCC
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNR--S-----LAIGCSDNSIRVWDISNS-S-IILEVHSPE--RCLLYSMKLWGDN 190 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~--~-----lasgs~Dg~V~iWd~~~~-~-~~~~~~~~~--~~~~~s~~~~~~s 190 (1088)
++.+....-|.+ |.-+.+.| +.+ . -+.|-.|+.|.-||.+-. . .+.-.+.+. +..-+++.. .
T Consensus 366 GKIVeEWk~~~d-i~mv~~t~---d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~a---T 438 (644)
T KOG2395|consen 366 GKIVEEWKFEDD-INMVDITP---DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFA---T 438 (644)
T ss_pred ceeeeEeeccCC-cceeeccC---CcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceee---e
Confidence 556666666665 88888887 432 2 235777999999998632 2 222222221 111122111 1
Q ss_pred CCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCE
Q 001391 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK 270 (1088)
Q Consensus 191 ~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~ 270 (1088)
...-+|++|+.+|.|++||-- ....-..+.+-..+|..|..+.+|++
T Consensus 439 T~sG~IvvgS~~GdIRLYdri---------------------------------~~~AKTAlPgLG~~I~hVdvtadGKw 485 (644)
T KOG2395|consen 439 TESGYIVVGSLKGDIRLYDRI---------------------------------GRRAKTALPGLGDAIKHVDVTADGKW 485 (644)
T ss_pred cCCceEEEeecCCcEEeehhh---------------------------------hhhhhhcccccCCceeeEEeeccCcE
Confidence 234589999999999999964 22233346778899999999999999
Q ss_pred EEEEECCCcEEEEEcC
Q 001391 271 LVSVSDDRSARIWEVR 286 (1088)
Q Consensus 271 l~s~s~Dg~v~iWd~~ 286 (1088)
++..+.. .+.+-++.
T Consensus 486 il~Tc~t-yLlLi~t~ 500 (644)
T KOG2395|consen 486 ILATCKT-YLLLIDTL 500 (644)
T ss_pred EEEeccc-EEEEEEEe
Confidence 8776654 56665543
No 393
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=88.41 E-value=34 Score=40.29 Aligned_cols=121 Identities=16% Similarity=0.303 Sum_probs=65.9
Q ss_pred CcEEEEEEecccCCC--CEEEEEEcCCcEEEEEcC-----CCceEEEeccCCc---eeEEEEeeecCCCCCcEEEEEecC
Q 001391 133 HWVFDVCFLKVCNGN--RSLAIGCSDNSIRVWDIS-----NSSIILEVHSPER---CLLYSMKLWGDNLEALRIASGTIY 202 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~--~~lasgs~Dg~V~iWd~~-----~~~~~~~~~~~~~---~~~~s~~~~~~s~~~~~l~sg~~d 202 (1088)
..|..+.|.|....+ .+||+ .-...|.+|.+. ..+.+....+..+ .++-.-+.| .|....|+.-+..
T Consensus 57 EhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVW--HPk~~iL~VLT~~ 133 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVW--HPKKAILTVLTAR 133 (671)
T ss_pred ceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccc--cCCCceEEEEecC
Confidence 458999999953322 25554 457889999985 2222222111111 011111122 2445555555554
Q ss_pred CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC-CCcEE
Q 001391 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRSAR 281 (1088)
Q Consensus 203 g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~-Dg~v~ 281 (1088)
..-.+.++... ..+....+ ...+-|.|.+|.+||++|+.+-. .=.-+
T Consensus 134 dvSV~~sV~~d-------------------------------~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSy 181 (671)
T PF15390_consen 134 DVSVLPSVHCD-------------------------------SSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSY 181 (671)
T ss_pred ceeEeeeeeeC-------------------------------CceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEE
Confidence 44455565510 12222233 45688999999999998876533 34567
Q ss_pred EEEcCCC
Q 001391 282 IWEVRAE 288 (1088)
Q Consensus 282 iWd~~~~ 288 (1088)
+||-..+
T Consensus 182 iWd~~qK 188 (671)
T PF15390_consen 182 IWDSAQK 188 (671)
T ss_pred EecCchh
Confidence 8886553
No 394
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.91 E-value=7.2 Score=47.46 Aligned_cols=124 Identities=10% Similarity=0.094 Sum_probs=76.3
Q ss_pred CCeEEEEECCCCeEEEEecCCCCC----c-ccccCCcccceeeeeeeccccCceEEEEEee--eCCCEEEEEcCCCcEEE
Q 001391 534 GHRFIFTADPKGRLKLWQLCDPFS----S-VCYESSKTNNVFLVAEFSSCFGARIMCLDAS--FEDEVLFCGDLRGNLVL 606 (1088)
Q Consensus 534 dg~~L~s~~~dg~i~vwd~~~~~~----~-~~~~~~~~~~~~l~~~~~~~h~~~It~l~~s--pdg~~LatGs~dg~I~I 606 (1088)
+...|+.+..||.|.+|.++.-.. . ...... .........|...-...+..+|+. ...++||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~-~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSG-FSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccc-cccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 567888999999999997642110 0 000000 000111112333345578899998 88899999999999999
Q ss_pred EeCCcccccccccccccccCcceeecccccccceeEEEEEeccCCc---eEEEEecCCCeEEEEEee
Q 001391 607 FPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQ---TEIRSTGGDGCICYLEYD 670 (1088)
Q Consensus 607 w~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~---~~l~t~g~Dg~i~iw~~~ 670 (1088)
|-+..... +........ |. ..|-+|+|.....+. ..|+.++-.|.+-+|++.
T Consensus 192 Faf~l~~~---------r~~~~~s~~--~~-hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 192 FAFALVDE---------RFYHVPSHQ--HS-HNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEEecccc---------ccccccccc--cc-cCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 87764210 000000111 22 469999999765332 378889999999998884
No 395
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=87.51 E-value=44 Score=35.76 Aligned_cols=184 Identities=11% Similarity=0.067 Sum_probs=99.5
Q ss_pred CcEEEEEEecccCCCCEEEEEEcCC--cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEe
Q 001391 133 HWVFDVCFLKVCNGNRSLAIGCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV 210 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasgs~Dg--~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~ 210 (1088)
.....+.|.. ++.++-+.|.-| .|+.+|+.+++...+..-+..-..-.++.+ ++.+..-.=.++...+||.
T Consensus 45 aFTQGL~~~~---~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~----~d~l~qLTWk~~~~f~yd~ 117 (264)
T PF05096_consen 45 AFTQGLEFLD---DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL----GDKLYQLTWKEGTGFVYDP 117 (264)
T ss_dssp -EEEEEEEEE---TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE----TTEEEEEESSSSEEEEEET
T ss_pred ccCccEEecC---CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE----CCEEEEEEecCCeEEEEcc
Confidence 4566788867 888888877766 799999999998877665544333333332 1222222335678888888
Q ss_pred ccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcc
Q 001391 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (1088)
Q Consensus 211 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~ 290 (1088)
. +.+.+.++. ..+.=++++ .+++.|+.+.....++++|..+-+.
T Consensus 118 ~---------------------------------tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~ 161 (264)
T PF05096_consen 118 N---------------------------------TLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKE 161 (264)
T ss_dssp T---------------------------------TTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SE
T ss_pred c---------------------------------cceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccce
Confidence 7 455555554 223445565 4666777776677899999876433
Q ss_pred cCCCCceeeeceeeeccCc---ceEEEEECCC-EEEEEeCCCcEEEEcC-CCceeEEEcc------------c--CCCCe
Q 001391 291 KDSDSIEEVGSSVLYGHNA---RVWDCCLTDS-FIITAGEDCTCRVWGS-DGKQLKMIKE------------H--IGRGI 351 (1088)
Q Consensus 291 ~~~~~~~~i~~~~~~~h~~---~I~~v~~~~~-~l~sg~~Dg~i~vWd~-~~~~~~~~~~------------h--~~~~V 351 (1088)
...+. ...... .+.-+.+-+. ..+=.-....|..-|. +|+....+.- + ...-.
T Consensus 162 -----~~~i~---V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVL 233 (264)
T PF05096_consen 162 -----VRTIQ---VTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVL 233 (264)
T ss_dssp -----EEEEE----EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-E
T ss_pred -----EEEEE---EEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCee
Confidence 22222 222222 2344555433 3333334445555566 6665554311 0 12247
Q ss_pred EEEEEcCCCCEEEEEe
Q 001391 352 WRCLYDSLSSLLVTAG 367 (1088)
Q Consensus 352 ~~l~~~~dg~~l~tg~ 367 (1088)
..||+.|..+.|...|
T Consensus 234 NGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 234 NGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EeEeEeCCCCEEEEEe
Confidence 8999998776555444
No 396
>PRK13684 Ycf48-like protein; Provisional
Probab=87.20 E-value=34 Score=38.53 Aligned_cols=157 Identities=9% Similarity=-0.052 Sum_probs=85.5
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECC
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd 96 (1088)
.+.+.++.+. |+ +.++++|..|.+..-.-..++.-..........+.++.+. +++ .+++++..
T Consensus 172 ~g~~~~i~~~--~~----g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~-------~~g----~~~~vg~~ 234 (334)
T PRK13684 172 AGVVRNLRRS--PD----GKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQ-------PDG----NLWMLARG 234 (334)
T ss_pred cceEEEEEEC--CC----CeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEc-------CCC----CEEEEecC
Confidence 4678899999 88 7899888877665421122232222333344578999998 665 56666666
Q ss_pred CEEEEEEeccCCCCCCCCCCccccccceeeec-cCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEecc
Q 001391 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSL-PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS 175 (1088)
Q Consensus 97 ~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~ 175 (1088)
+.+++=.-+... . .+.+..- ..-...+.++.+.| ++..+++ +.+|.+. .....++.-.....
T Consensus 235 G~~~~~s~d~G~----s--------W~~~~~~~~~~~~~l~~v~~~~---~~~~~~~-G~~G~v~-~S~d~G~tW~~~~~ 297 (334)
T PRK13684 235 GQIRFNDPDDLE----S--------WSKPIIPEITNGYGYLDLAYRT---PGEIWAG-GGNGTLL-VSKDGGKTWEKDPV 297 (334)
T ss_pred CEEEEccCCCCC----c--------cccccCCccccccceeeEEEcC---CCCEEEE-cCCCeEE-EeCCCCCCCeECCc
Confidence 665422122111 1 1111110 11123578899988 7776554 4567554 34455554444332
Q ss_pred --CCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEec
Q 001391 176 --PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 176 --~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
......+.+.+. ++......+..|.|..|+-.
T Consensus 298 ~~~~~~~~~~~~~~----~~~~~~~~G~~G~il~~~~~ 331 (334)
T PRK13684 298 GEEVPSNFYKIVFL----DPEKGFVLGQRGVLLRYVGS 331 (334)
T ss_pred CCCCCcceEEEEEe----CCCceEEECCCceEEEecCC
Confidence 222345666553 22344556678888877643
No 397
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=87.02 E-value=50 Score=35.85 Aligned_cols=249 Identities=14% Similarity=0.140 Sum_probs=126.1
Q ss_pred ceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccC-----CCCcEEEEEEe
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR-----LSHWVFDVCFL 141 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~-----h~~~I~~v~f~ 141 (1088)
.-++|+++ |.+. ..++..+.+...+||......++.. ..++-.+.. -....+.+.|+
T Consensus 24 N~WGia~~-------p~~~---~WVadngT~~~TlYdg~~~~~~g~~--------~~L~vtiP~~~~~~~~~~PTGiVfN 85 (336)
T TIGR03118 24 NAWGLSYR-------PGGP---FWVANTGTGTATLYVGNPDTQPLVQ--------DPLVVVIPAPPPLAAEGTPTGQVFN 85 (336)
T ss_pred ccceeEec-------CCCC---EEEecCCcceEEeecCCcccccCCc--------cceEEEecCCCCCCCCCCccEEEEe
Confidence 35899999 5542 5555566799999998743322211 223333332 22457777776
Q ss_pred ccc-----CCC----CEEEEEEcCCcEEEEEcCCCce-----EEEeccCCceeEE-EEeeecCCCCCcEEEE-EecCCeE
Q 001391 142 KVC-----NGN----RSLAIGCSDNSIRVWDISNSSI-----ILEVHSPERCLLY-SMKLWGDNLEALRIAS-GTIYNEI 205 (1088)
Q Consensus 142 p~~-----~d~----~~lasgs~Dg~V~iWd~~~~~~-----~~~~~~~~~~~~~-s~~~~~~s~~~~~l~s-g~~dg~I 205 (1088)
..+ ..+ ..++.+++||+|.=|...-... ...+.......+| .+++... ..+.+|+. --..++|
T Consensus 86 ~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~-~~~~~LYaadF~~g~I 164 (336)
T TIGR03118 86 GSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPT-GGGDYLYAANFRQGRI 164 (336)
T ss_pred CCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeec-CCCceEEEeccCCCce
Confidence 411 011 1356678999999998643322 1222222222333 3444322 22344444 3456888
Q ss_pred EEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 001391 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEV 285 (1088)
Q Consensus 206 ~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~ 285 (1088)
-|+|-...+..-. .. +.-..-.....-.. ++.+.+ .--|+-..-.+++..=+.+..-|.|-++|.
T Consensus 165 DVFd~~f~~~~~~--g~--F~DP~iPagyAPFn----------Iqnig~-~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~ 229 (336)
T TIGR03118 165 DVFKGSFRPPPLP--GS--FIDPALPAGYAPFN----------VQNLGG-TLYVTYAQQDADRNDEVAGAGLGYVNVFTL 229 (336)
T ss_pred EEecCccccccCC--CC--ccCCCCCCCCCCcc----------eEEECC-eEEEEEEecCCcccccccCCCcceEEEEcC
Confidence 8888663221100 00 00000000000111 111110 000111111333333344555678888888
Q ss_pred CCCcccCCCCceeeeceeeeccCcceEEEEEC--------CCEEEEEeCCCcEEEEcC-CCceeEEEcccCC-----CCe
Q 001391 286 RAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--------DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIG-----RGI 351 (1088)
Q Consensus 286 ~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--------~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~-----~~V 351 (1088)
... .++.+...+.-...|.++.. +.+|+----||+|..+|. +|+.+..+....+ +++
T Consensus 230 ~G~---------l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GL 300 (336)
T TIGR03118 230 NGQ---------LLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGL 300 (336)
T ss_pred CCc---------EEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCe
Confidence 763 22212233444456777653 567777677999999998 7887777766544 257
Q ss_pred EEEEEcC
Q 001391 352 WRCLYDS 358 (1088)
Q Consensus 352 ~~l~~~~ 358 (1088)
|.|+|..
T Consensus 301 WgL~fGn 307 (336)
T TIGR03118 301 WSLTFGN 307 (336)
T ss_pred EEeeeCC
Confidence 8898865
No 398
>PHA03098 kelch-like protein; Provisional
Probab=85.76 E-value=24 Score=42.80 Aligned_cols=104 Identities=9% Similarity=0.001 Sum_probs=48.8
Q ss_pred CCCEEEEEECC------CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCC--------cEEE
Q 001391 267 CGSKLVSVSDD------RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDC--------TCRV 332 (1088)
Q Consensus 267 ~g~~l~s~s~D------g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg--------~i~v 332 (1088)
+++..+.|+.+ +.+..||..+.+. ..+. .+.........+...+..++.||.+. .+.+
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W------~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~ 460 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKW------SKGS--PLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVES 460 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCee------eecC--CCCccccCceEEEECCEEEEECCccCCCCCcccceEEE
Confidence 45566666632 4578888887654 1111 11101111123333456666676432 3778
Q ss_pred EcCCCceeEEEcccC-CCCeEEEEEcCCCCEEEEEeCC-----CCEEEEEcCC
Q 001391 333 WGSDGKQLKMIKEHI-GRGIWRCLYDSLSSLLVTAGFD-----SAIKVHQFQA 379 (1088)
Q Consensus 333 Wd~~~~~~~~~~~h~-~~~V~~l~~~~dg~~l~tg~~D-----g~I~iwd~~~ 379 (1088)
||.....-..+.... .+.-.+++. -++.+++.||.+ ..+.+||...
T Consensus 461 yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 461 YNPVTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred ecCCCCceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCC
Confidence 887433222221110 001112222 266677777765 3566777644
No 399
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=85.75 E-value=21 Score=43.64 Aligned_cols=163 Identities=13% Similarity=0.146 Sum_probs=91.6
Q ss_pred CCEEEEEeCCeEEEEECCCCeeEE------EEee-e--------------CCcceEEEEecccccccCCCccceeeEEEE
Q 001391 35 LPFLLAGSGSQVLLYDLEAGTLIR------PFQV-F--------------HGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1088)
Q Consensus 35 ~~~laag~d~~I~vwd~~tg~~~~------~~~~-~--------------~~~~V~~i~~s~~~~~~~~d~~~~~~~la~ 93 (1088)
+.+|..+.++.|.||+...-..+. .+.. . ....|.-|.+.- .+. .+.++++
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~----lg~----~EVLl~c 120 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGD----LGG----EEVLLLC 120 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecc----cCC----eeEEEEE
Confidence 568888899999999986422211 1100 0 001133333221 111 2477888
Q ss_pred ECCCEEEEEEeccC-----CC--CCCCCCCccccccceeeeccCCCCcEEEEEEe--cccCCCCEEEEEEcCCcEEEEEc
Q 001391 94 FGEKRVKLFELNFE-----LS--PNSQYQPETCVNLSLVQSLPRLSHWVFDVCFL--KVCNGNRSLAIGCSDNSIRVWDI 164 (1088)
Q Consensus 94 ~gd~~v~iw~l~~~-----~~--~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~--p~~~d~~~lasgs~Dg~V~iWd~ 164 (1088)
.+||.|.+|..+.- .. ...... .....++...+. -....|+++++ . ..++||+++....|.||-+
T Consensus 121 ~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~--~r~~i~P~f~~~-v~~SaWGLdIh~~~---~~rlIAVSsNs~~VTVFaf 194 (717)
T PF08728_consen 121 TDDGDVLAYYTETIIEAIERFSEDNDSGF--SRLKIKPFFHLR-VGASAWGLDIHDYK---KSRLIAVSSNSQEVTVFAF 194 (717)
T ss_pred ecCCeEEEEEHHHHHHHHHhhcccccccc--ccccCCCCeEee-cCCceeEEEEEecC---cceEEEEecCCceEEEEEE
Confidence 88999999987520 00 000000 001112222222 23478999998 6 7789999988888988876
Q ss_pred CCCce-EEEe-ccCCceeEEEEeeecCCCCCc---EEEEEecCCeEEEEEec
Q 001391 165 SNSSI-ILEV-HSPERCLLYSMKLWGDNLEAL---RIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 165 ~~~~~-~~~~-~~~~~~~~~s~~~~~~s~~~~---~l~sg~~dg~I~vwd~~ 211 (1088)
..... .... .......+-++.|.....++. .|++++..|++.+|++.
T Consensus 195 ~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 195 ALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred eccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 54211 1110 111223355677776654433 88899999999999984
No 400
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=85.61 E-value=0.25 Score=59.18 Aligned_cols=106 Identities=16% Similarity=0.284 Sum_probs=52.7
Q ss_pred EEEEEE-CCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEE---ECCCEEEEEeCCCcEEEEcC-CCceeEEEc
Q 001391 270 KLVSVS-DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC---LTDSFIITAGEDCTCRVWGS-DGKQLKMIK 344 (1088)
Q Consensus 270 ~l~s~s-~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~---~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~ 344 (1088)
++++++ ..+.+++|.-...++........+. ....|...|.... |.-..+++-+.+++|.+|.- .........
T Consensus 306 ~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~--iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~a~~~~vs~ 383 (1283)
T KOG1916|consen 306 LRITTTDVNREEKFWAEAPWQCLLDKLIDGVQ--IVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRKAQPLVVSR 383 (1283)
T ss_pred EEEecccCCcceeEeeccchhhhhhhcccceE--eecCCCccccchhhhHHHHHHHHHhhhHHHHHHhhcchhhhhhhhh
Confidence 345544 4567999998776652111112222 2335655554422 22345667778899999875 222222233
Q ss_pred ccCCCCeEEEEE--cC---CCCEEEEEeC-CCCEEEEEc
Q 001391 345 EHIGRGIWRCLY--DS---LSSLLVTAGF-DSAIKVHQF 377 (1088)
Q Consensus 345 ~h~~~~V~~l~~--~~---dg~~l~tg~~-Dg~I~iwd~ 377 (1088)
.|.+-+|.+-.+ +| +...+.+|+. +..+++|-.
T Consensus 384 ~~~~hpV~S~i~v~S~~R~~h~e~~~~~~~nr~~~i~~s 422 (1283)
T KOG1916|consen 384 PHDGHPVLSAIFVTSPERPDHIELITGGPLNRELKIWVS 422 (1283)
T ss_pred hhhcceeccccccccCCCccccccccCCcchhhhhhhhh
Confidence 344334544322 22 2224455543 445666655
No 401
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=85.49 E-value=76 Score=36.53 Aligned_cols=261 Identities=12% Similarity=0.080 Sum_probs=145.3
Q ss_pred CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccc
Q 001391 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLS 123 (1088)
Q Consensus 44 ~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~ 123 (1088)
..+.+++..+.+....+..+. ...++... +++. ..+++-.+...+...+... . .
T Consensus 11 ~~~~v~~~~~~~~~~~~~~~~--~~~~v~~~-------~~g~--~~~v~~~~~~~~~~~~~~~-n--------------~ 64 (381)
T COG3391 11 ADVSVINTGTNKVTAAISLGR--GPGGVAVN-------PDGT--QVYVANSGSNDVSVIDATS-N--------------T 64 (381)
T ss_pred CceEEEeecccEEEEEeecCC--CCceeEEc-------CccC--EEEEEeecCceeeeccccc-c--------------e
Confidence 347788877777766666533 36777777 5552 1233333333343333331 1 1
Q ss_pred eeeeccCCCCcEEEEEEecccCCCC-EEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEec-
Q 001391 124 LVQSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI- 201 (1088)
Q Consensus 124 ~~~~l~~h~~~I~~v~f~p~~~d~~-~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~- 201 (1088)
.......-...-..+++++ .+. ..++...++.|.+.|..+.+.......... -..+.+ ++++..+..+..
T Consensus 65 ~~~~~~~g~~~p~~i~v~~---~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~--P~~~~~---~~~~~~vYV~n~~ 136 (381)
T COG3391 65 VTQSLSVGGVYPAGVAVNP---AGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLG--PVGLAV---DPDGKYVYVANAG 136 (381)
T ss_pred eeeeccCCCccccceeeCC---CCCeEEEecCCCCeEEEEcCcccceeeEeeeccC--CceEEE---CCCCCEEEEEecc
Confidence 1111111113345677877 776 445555578999999887777766654332 223333 466766655544
Q ss_pred --CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEE-ECCC
Q 001391 202 --YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV-SDDR 278 (1088)
Q Consensus 202 --dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~-s~Dg 278 (1088)
++.+.+.|.. +...+.....-..+ ..++++|+|.++..+ ..++
T Consensus 137 ~~~~~vsvid~~---------------------------------t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~ 182 (381)
T COG3391 137 NGNNTVSVIDAA---------------------------------TNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDN 182 (381)
T ss_pred cCCceEEEEeCC---------------------------------CCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCC
Confidence 5777777776 44445444433334 899999999976555 4788
Q ss_pred cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC---CcEEEEcC-CCceeEE-EcccCCCCe
Q 001391 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGS-DGKQLKM-IKEHIGRGI 351 (1088)
Q Consensus 279 ~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D---g~i~vWd~-~~~~~~~-~~~h~~~~V 351 (1088)
.|.+.|...... .+... ....+-......+.+. +..+...... +.+.+.|. .+..... ...-.. .-
T Consensus 183 ~v~vi~~~~~~v-----~~~~~-~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~ 255 (381)
T COG3391 183 TVSVIDTSGNSV-----VRGSV-GSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-AP 255 (381)
T ss_pred eEEEEeCCCcce-----ecccc-ccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CC
Confidence 999999766432 00000 0011112233455554 5544443333 58888888 4444333 222221 24
Q ss_pred EEEEEcCCCCEEEEEeC-CCCEEEEEcCC
Q 001391 352 WRCLYDSLSSLLVTAGF-DSAIKVHQFQA 379 (1088)
Q Consensus 352 ~~l~~~~dg~~l~tg~~-Dg~I~iwd~~~ 379 (1088)
..+.+.|+|..+..... .+.+.+-|...
T Consensus 256 ~~v~~~p~g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 256 RGVAVDPAGKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred CceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence 57889999998877744 47777777643
No 402
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.08 E-value=26 Score=35.56 Aligned_cols=96 Identities=11% Similarity=0.114 Sum_probs=58.6
Q ss_pred CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccc
Q 001391 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLS 123 (1088)
Q Consensus 44 ~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~ 123 (1088)
..|++||+.+|+.+.+-..... .+++--+... .|. ....++.++....+|.++ ++
T Consensus 68 S~ir~~~L~~gq~~~s~~l~~~-~~FgEGit~~-----gd~----~y~LTw~egvaf~~d~~t---------------~~ 122 (262)
T COG3823 68 SKIRVSDLTTGQEIFSEKLAPD-TVFGEGITKL-----GDY----FYQLTWKEGVAFKYDADT---------------LE 122 (262)
T ss_pred ceeEEEeccCceEEEEeecCCc-cccccceeec-----cce----EEEEEeccceeEEEChHH---------------hh
Confidence 7899999999999887765422 3443333211 343 788889999999999874 23
Q ss_pred eeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceE
Q 001391 124 LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII 170 (1088)
Q Consensus 124 ~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~ 170 (1088)
.+..+. ..+.=|.++- |+..|..+....+++.-|.++....
T Consensus 123 ~lg~~~-y~GeGWgLt~-----d~~~LimsdGsatL~frdP~tfa~~ 163 (262)
T COG3823 123 ELGRFS-YEGEGWGLTS-----DDKNLIMSDGSATLQFRDPKTFAEL 163 (262)
T ss_pred hhcccc-cCCcceeeec-----CCcceEeeCCceEEEecCHHHhhhc
Confidence 333222 1222344443 5555666655667777777654433
No 403
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=84.68 E-value=3.1 Score=30.59 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=26.0
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEeC-CeEEEEECCCC
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGSG-SQVLLYDLEAG 54 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~d-~~I~vwd~~tg 54 (1088)
|.|.+++|| |+.. ...+|+...+ +.|.|+|+.++
T Consensus 1 GAvR~~kFs--P~~~-~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFS--PEPG-GNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeC--CCCC-cccEEEEEccCCeEEEEEcccC
Confidence 568999999 8611 1268888886 99999999853
No 404
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.95 E-value=65 Score=34.47 Aligned_cols=101 Identities=9% Similarity=0.086 Sum_probs=66.4
Q ss_pred EEEEEeccCCCCCCCCEEEEEe--CCeEEEEECCCCeeEEEEeeeCCcceE-EEEecccccccCCCccceeeEEEEE-C-
Q 001391 21 SALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLH-GISCNFINCTEGSVSTRVTFEVALF-G- 95 (1088)
Q Consensus 21 ~~v~fs~~pd~~~~~~~laag~--d~~I~vwd~~tg~~~~~~~~~~~~~V~-~i~~s~~~~~~~~d~~~~~~~la~~-g- 95 (1088)
..++|+ |. ..+-++.+- +..-.++|..+.+.+.++...++---+ .=.|| ||| .+|-.. +
T Consensus 71 Hgi~~~--p~---~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs-------~dG----~~LYATEnd 134 (366)
T COG3490 71 HGIAFH--PA---LPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFS-------PDG----RLLYATEND 134 (366)
T ss_pred CCeecC--CC---CcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccC-------CCC----cEEEeecCC
Confidence 357777 75 234444443 567889999888776665543221111 12477 888 455443 2
Q ss_pred ----CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE
Q 001391 96 ----EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC 154 (1088)
Q Consensus 96 ----d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs 154 (1088)
.+.|-|||.... ++.+..+..|.=.-..+.+.+ ||++|+.+.
T Consensus 135 fd~~rGViGvYd~r~~--------------fqrvgE~~t~GiGpHev~lm~---DGrtlvvan 180 (366)
T COG3490 135 FDPNRGVIGVYDAREG--------------FQRVGEFSTHGIGPHEVTLMA---DGRTLVVAN 180 (366)
T ss_pred CCCCCceEEEEecccc--------------cceecccccCCcCcceeEEec---CCcEEEEeC
Confidence 267999998832 567777888887778899999 999988763
No 405
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=83.93 E-value=5.6 Score=46.96 Aligned_cols=109 Identities=14% Similarity=0.137 Sum_probs=71.7
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcCC
Q 001391 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSD 336 (1088)
Q Consensus 257 ~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~~ 336 (1088)
.-++++.-+|.|+.+++++.||+|++|+....+. ..+ .....+-..+.|.+.-++++..|..+.-|.-+
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q------ski-----~~~~~p~~nlv~tnhgl~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ------SKI-----CEEAKPKENLVFTNHGLVTATSDRRALAWKED 83 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccch------hhh-----hhhcCCccceeeeccceEEEeccchhheeecc
Confidence 4467788889999999999999999999987543 111 11222334455666668888889999999887
Q ss_pred CceeEEEcc--cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 337 GKQLKMIKE--HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 337 ~~~~~~~~~--h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
|-..+++.. ...+...++.+.|..+. +.|.--|-|.-+|.
T Consensus 84 gvvqqqfdyndqsekefss~~cdptaqn-vvgtlcggv~q~dc 125 (1636)
T KOG3616|consen 84 GVVQQQFDYNDQSEKEFSSILCDPTAQN-VVGTLCGGVEQFDC 125 (1636)
T ss_pred CcchhhccccchhhhhccceecCchhhh-hhhhhccceeeehH
Confidence 765555432 22334667777776543 33444455555554
No 406
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=83.34 E-value=1.5e+02 Score=38.21 Aligned_cols=189 Identities=15% Similarity=0.146 Sum_probs=105.2
Q ss_pred cEEEEEcCCCceEEEeccCCceeEEEEeeecCC------CCCcEEEEEec---------CCeEEEEEeccCccccCCCCC
Q 001391 158 SIRVWDISNSSIILEVHSPERCLLYSMKLWGDN------LEALRIASGTI---------YNEIIVWKVDWEHVAPLLNSP 222 (1088)
Q Consensus 158 ~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s------~~~~~l~sg~~---------dg~I~vwd~~~~~~~~~~~~~ 222 (1088)
.|.+.+..+++.+-.+.-++...+.++++..-. ....+|++|+. .|.+.|+|+- +..|...
T Consensus 1005 ~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diI--eVVPepg-- 1080 (1366)
T KOG1896|consen 1005 SIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDII--EVVPEPG-- 1080 (1366)
T ss_pred eeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEE--EecCCCC--
Confidence 466666666666666655555555555543211 11347888763 4889999976 1111111
Q ss_pred CCccCCCCCCCCceeEecccccceeeeEEE--eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeee
Q 001391 223 EGNHAHGSSSDFKCFKLQDQQHTAVNLFRL--VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG 300 (1088)
Q Consensus 223 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~ 300 (1088)
+. .+...++.+ +.-++.|..++=- +| +|+++.. ..|.+|+++... ..++
T Consensus 1081 --------kP-----------~t~~KlKel~~eE~KGtVsavceV-~G-~l~~~~G-qKI~v~~l~r~~-------~lig 1131 (1366)
T KOG1896|consen 1081 --------KP-----------FTKNKLKELYIEEQKGTVSAVCEV-RG-HLLSSQG-QKIIVRKLDRDS-------ELIG 1131 (1366)
T ss_pred --------CC-----------cccceeeeeehhhcccceEEEEEe-cc-EEEEccC-cEEEEEEeccCC-------ccee
Confidence 00 011122222 2345667666532 33 4555433 479999995532 2333
Q ss_pred ceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcC--CCceeEEEcc-cCCCCeEEEEEcCCCC--EEEEEeCCCCEEEE
Q 001391 301 SSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS--DGKQLKMIKE-HIGRGIWRCLYDSLSS--LLVTAGFDSAIKVH 375 (1088)
Q Consensus 301 ~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~--~~~~~~~~~~-h~~~~V~~l~~~~dg~--~l~tg~~Dg~I~iw 375 (1088)
..+..-.-.+.++..-.++|+.|.--..|.+... ....+..+.. ...-.+.++.|.-||. .++++..|++|+++
T Consensus 1132 -VaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1132 -VAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVY 1210 (1366)
T ss_pred -eEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEE
Confidence 2333333444444444678888777666666555 4444444322 2222488888877775 67888999999999
Q ss_pred EcCCC
Q 001391 376 QFQAF 380 (1088)
Q Consensus 376 d~~~~ 380 (1088)
-..-.
T Consensus 1211 ~Y~Pe 1215 (1366)
T KOG1896|consen 1211 MYAPE 1215 (1366)
T ss_pred EeCCC
Confidence 87543
No 407
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=83.07 E-value=19 Score=43.57 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=69.3
Q ss_pred CCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCC
Q 001391 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (1088)
Q Consensus 35 ~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~ 113 (1088)
++..++-+ ..++.|||...+.+...-.-.+...|.+++|... ||++ .+++++-.+.|.++.--.-. ...
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst-----~d~q---siLaVGf~~~v~l~~Q~R~d--y~~ 110 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTST-----PDGQ---SILAVGFPHHVLLYTQLRYD--YTN 110 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeec-----CCCC---EEEEEEcCcEEEEEEccchh--hhc
Confidence 45555544 4799999999887544333223447999999865 8885 77888889999999653111 000
Q ss_pred CCCccccccceeee--ccCCC-CcEEEEEEecccCCCCEEEEEEcCCcEEEEEc
Q 001391 114 YQPETCVNLSLVQS--LPRLS-HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDI 164 (1088)
Q Consensus 114 ~~~~~~~~~~~~~~--l~~h~-~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~ 164 (1088)
..| ....++. +..|+ ++|.+..|.+ +|.+++.+ ++.+.|+|-
T Consensus 111 ~~p----~w~~i~~i~i~~~T~h~Igds~Wl~---~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 111 KGP----SWAPIRKIDISSHTPHPIGDSIWLK---DGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred CCc----ccceeEEEEeecCCCCCccceeEec---CCeEEEEe--CCEEEEECC
Confidence 011 1122222 23454 6799999998 88755433 466777764
No 408
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=82.82 E-value=35 Score=39.72 Aligned_cols=168 Identities=16% Similarity=0.139 Sum_probs=84.6
Q ss_pred CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECC-CEEEEEEeccCCCCCCCCCCcccccc
Q 001391 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE-KRVKLFELNFELSPNSQYQPETCVNL 122 (1088)
Q Consensus 44 ~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd-~~v~iw~l~~~~~~~~~~~~~~~~~~ 122 (1088)
..+.+=|.. |.-...+.. ....+..-+|+ |+++....+....+. ..+.+++++... .
T Consensus 173 ~~l~~~D~d-g~~~~~l~~-~~~~~~~p~ws-------~~~~~~~y~~f~~~~~~~i~~~~l~~g~-------------~ 230 (425)
T COG0823 173 YELALGDYD-GYNQQKLTD-SGSLILTPAWS-------PDGKKLAYVSFELGGCPRIYYLDLNTGK-------------R 230 (425)
T ss_pred ceEEEEccC-CcceeEecc-cCcceeccccC-------cCCCceEEEEEecCCCceEEEEeccCCc-------------c
Confidence 344444443 433333332 22345556676 666311111111223 468888988654 3
Q ss_pred ceeeeccCCCCcEEEEEEecccCCCCEEEEE-EcCCc--EEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEE
Q 001391 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNS--IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASG 199 (1088)
Q Consensus 123 ~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg-s~Dg~--V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg 199 (1088)
..+..+.++. ..-+|+| ||+.|+-. ..|+. |.+.|+..+.... +..... ....-. .+|||..|+-.
T Consensus 231 ~~i~~~~g~~---~~P~fsp---DG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~g-i~~~Ps---~spdG~~ivf~ 299 (425)
T COG0823 231 PVILNFNGNN---GAPAFSP---DGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFG-INTSPS---WSPDGSKIVFT 299 (425)
T ss_pred ceeeccCCcc---CCccCCC---CCCEEEEEECCCCCccEEEEcCCCCccee-cccCCc-cccCcc---CCCCCCEEEEE
Confidence 3444445444 3467899 98866554 55665 5556666665333 332211 111222 26888877654
Q ss_pred -ecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC
Q 001391 200 -TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD 276 (1088)
Q Consensus 200 -~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~ 276 (1088)
+..|.-.||-... .+....++.-..+.=..-.|+|||++++..+.
T Consensus 300 Sdr~G~p~I~~~~~--------------------------------~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 300 SDRGGRPQIYLYDL--------------------------------EGSQVTRLTFSGGGNSNPVWSPDGDKIVFESS 345 (425)
T ss_pred eCCCCCcceEEECC--------------------------------CCCceeEeeccCCCCcCccCCCCCCEEEEEec
Confidence 4455555554440 11112222222222226778999999988774
No 409
>PHA03098 kelch-like protein; Provisional
Probab=82.71 E-value=38 Score=41.07 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=17.0
Q ss_pred CCCEEEEEEcC-----CcEEEEEcCCCceE
Q 001391 146 GNRSLAIGCSD-----NSIRVWDISNSSII 170 (1088)
Q Consensus 146 d~~~lasgs~D-----g~V~iWd~~~~~~~ 170 (1088)
++...+.||.+ ..+..||..+.+..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 66777778765 34777888766543
No 410
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=82.37 E-value=1e+02 Score=35.49 Aligned_cols=228 Identities=14% Similarity=0.150 Sum_probs=91.3
Q ss_pred CeeEEEEeeeC-CcceEEEEecccccccCC--CccceeeEEEEEC--CCEEEEEEeccCCCCCCCCCCccccccceeeec
Q 001391 54 GTLIRPFQVFH-GIRLHGISCNFINCTEGS--VSTRVTFEVALFG--EKRVKLFELNFELSPNSQYQPETCVNLSLVQSL 128 (1088)
Q Consensus 54 g~~~~~~~~~~-~~~V~~i~~s~~~~~~~~--d~~~~~~~la~~g--d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l 128 (1088)
+++++.+.... +...|..-|+. |+..+ +....+++|++-+ ...|.|.|+.+.. .. .++.+.+
T Consensus 52 gqVIhrl~mp~~GDElHH~GWNa--CSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dP-----r~------P~l~KvI 118 (461)
T PF05694_consen 52 GQVIHRLPMPNRGDELHHSGWNA--CSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDP-----RK------PRLHKVI 118 (461)
T ss_dssp TSEEEEEE-SSS---B---EES----GGSTT--TT--S-EEEEEBTTT--EEEEE--S-T-----TS-------EEEEEE
T ss_pred ccEEEEEeCCCCCCccccccCcc--cccccCCCCcccCCcEEeeeeccCcEEEEECCCCC-----CC------CceEeee
Confidence 57888776533 34567666651 22222 1111236666666 7889999988533 11 2333333
Q ss_pred cC---CC----CcEEEEEEecccCCCCEEEEEE--c----CCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcE
Q 001391 129 PR---LS----HWVFDVCFLKVCNGNRSLAIGC--S----DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALR 195 (1088)
Q Consensus 129 ~~---h~----~~I~~v~f~p~~~d~~~lasgs--~----Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~ 195 (1088)
.. +. ..-..+...| +|+.++|+- . -|-+.+.|-++.+.......+.....+.-.||.. |..+.
T Consensus 119 e~~ev~~k~g~s~PHT~Hclp---~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~q-pr~nv 194 (461)
T PF05694_consen 119 EPEEVFEKTGLSRPHTVHCLP---DGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQ-PRHNV 194 (461)
T ss_dssp -HHHHHHHH-EEEEEEEEE-S---S--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEE-TTTTE
T ss_pred CHHHHHhhcCCCCCceeeecC---CccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEc-CCCCE
Confidence 21 11 2233444556 888887752 2 2357788888887777766544434444444443 33444
Q ss_pred EEEEe--------------------cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCC
Q 001391 196 IASGT--------------------IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (1088)
Q Consensus 196 l~sg~--------------------~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 255 (1088)
++|.. .-..+.+||+. +.+.++++.-.
T Consensus 195 MiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~---------------------------------~r~~~Q~idLg 241 (461)
T PF05694_consen 195 MISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWS---------------------------------TRKLLQTIDLG 241 (461)
T ss_dssp EEE-B---HHHHTT---TTTHHHH-S--EEEEEETT---------------------------------TTEEEEEEES-
T ss_pred EEEeccCChhhcccCCChhHhhcccccCeEEEEECC---------------------------------CCcEeeEEecC
Confidence 55432 12567777777 66666666533
Q ss_pred C--CCEEEEEEcC--CCCE-EEEEECCCcEEEEEc-CCCcccCCCCceee-e--ceeeec------------cCcceEEE
Q 001391 256 E--GSIFRIEWSS--CGSK-LVSVSDDRSARIWEV-RAEYWKDSDSIEEV-G--SSVLYG------------HNARVWDC 314 (1088)
Q Consensus 256 ~--~~V~~v~~sp--~g~~-l~s~s~Dg~v~iWd~-~~~~~~~~~~~~~i-~--~~~~~~------------h~~~I~~v 314 (1088)
+ ..+..|.|.. +..+ ++.+.-..+|..|-- ..+... .+.+ . .....+ -..-|+++
T Consensus 242 ~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~----a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI 317 (461)
T PF05694_consen 242 EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWA----AEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDI 317 (461)
T ss_dssp TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEE----EEEEEEE--EE--SS---GGGGGG-EE------E
T ss_pred CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCee----eeEEEECCCcccCcccccccccccccCCCceEeE
Confidence 2 2356777754 3433 333334445544433 333221 1111 1 000000 13457888
Q ss_pred EEC--CCEE-EEEeCCCcEEEEcC
Q 001391 315 CLT--DSFI-ITAGEDCTCRVWGS 335 (1088)
Q Consensus 315 ~~~--~~~l-~sg~~Dg~i~vWd~ 335 (1088)
..+ +.+| ++.-.+|.+|.||+
T Consensus 318 ~iSlDDrfLYvs~W~~GdvrqYDI 341 (461)
T PF05694_consen 318 LISLDDRFLYVSNWLHGDVRQYDI 341 (461)
T ss_dssp EE-TTS-EEEEEETTTTEEEEEE-
T ss_pred EEccCCCEEEEEcccCCcEEEEec
Confidence 887 4544 56668999999999
No 411
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=82.25 E-value=25 Score=40.89 Aligned_cols=129 Identities=19% Similarity=0.148 Sum_probs=72.7
Q ss_pred CceEEecCCCce------eeeeEEEEEeccCCCCCCCCEEEEEe--C--CeEEEEECCCCeeEEEEeeeCCcceEEEEec
Q 001391 5 DLSEWRLDVGQY------LGEISALCFVHLPSHLSSLPFLLAGS--G--SQVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (1088)
Q Consensus 5 ~i~iWdl~~g~~------~~~V~~v~fs~~pd~~~~~~~laag~--d--~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s 74 (1088)
.+.++|+.+++. .+.-.+-+|+ || ++.|+-.. + ..|.++|+.++... .+....+... .=.|+
T Consensus 219 ~i~~~~l~~g~~~~i~~~~g~~~~P~fs--pD----G~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~-~Ps~s 290 (425)
T COG0823 219 RIYYLDLNTGKRPVILNFNGNNGAPAFS--PD----GSKLAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFGINT-SPSWS 290 (425)
T ss_pred eEEEEeccCCccceeeccCCccCCccCC--CC----CCEEEEEECCCCCccEEEEcCCCCcce-ecccCCcccc-CccCC
Confidence 488899999883 3445577899 99 66666654 3 57888898877633 3443333211 33444
Q ss_pred ccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEE
Q 001391 75 FINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG 153 (1088)
Q Consensus 75 ~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg 153 (1088)
|||+ .++.+++ .+.=.||-...+. .....+......=..-.++| ||++|+..
T Consensus 291 -------pdG~---~ivf~Sdr~G~p~I~~~~~~g--------------~~~~riT~~~~~~~~p~~Sp---dG~~i~~~ 343 (425)
T COG0823 291 -------PDGS---KIVFTSDRGGRPQIYLYDLEG--------------SQVTRLTFSGGGNSNPVWSP---DGDKIVFE 343 (425)
T ss_pred -------CCCC---EEEEEeCCCCCcceEEECCCC--------------CceeEeeccCCCCcCccCCC---CCCEEEEE
Confidence 8883 4444443 4555666555332 11111111111111666788 99988877
Q ss_pred Ec-CCc--EEEEEcCCCc
Q 001391 154 CS-DNS--IRVWDISNSS 168 (1088)
Q Consensus 154 s~-Dg~--V~iWd~~~~~ 168 (1088)
+. +|. |.+.|+.++.
T Consensus 344 ~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 344 SSSGGQWDIDKNDLASGG 361 (425)
T ss_pred eccCCceeeEEeccCCCC
Confidence 64 343 5566665554
No 412
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=81.99 E-value=54 Score=41.21 Aligned_cols=106 Identities=10% Similarity=0.043 Sum_probs=66.6
Q ss_pred EEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEE--EEcCCCcee
Q 001391 263 EWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCR--VWGSDGKQL 340 (1088)
Q Consensus 263 ~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~--vWd~~~~~~ 340 (1088)
+..|-..++++|- .+.+++|++..++. ++...+.--+..|..+++....++.|...-.+. .|+..++.+
T Consensus 940 Ai~~f~~~~Lagv-G~~l~~YdlG~K~l--------LRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l 1010 (1205)
T KOG1898|consen 940 AICPFQGRVLAGV-GRFLRLYDLGKKKL--------LRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQL 1010 (1205)
T ss_pred EEeccCCEEEEec-ccEEEEeeCChHHH--------HhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCeE
Confidence 4456566655553 45899999988644 211122224677899999887787776555554 455566666
Q ss_pred EEEcccC-CCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 341 KMIKEHI-GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 341 ~~~~~h~-~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
..+.... .+.|+.+.+.. ...++.+.+-|.+.+-.+.
T Consensus 1011 ~~fadD~~pR~Vt~~~~lD-~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1011 IVFADDPVPRHVTALELLD-YDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred EEEeCCCccceeeEEEEec-CCceeeccccCcEEEEECC
Confidence 6664322 23466666553 3457888887888777663
No 413
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=81.71 E-value=1e+02 Score=38.44 Aligned_cols=94 Identities=11% Similarity=0.133 Sum_probs=59.3
Q ss_pred CceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcc-c----ccccccccccccCcce-eecccccccceeEEEEEeccCCce
Q 001391 580 GARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD-L----LNDKSVALHVEVSPLN-YFKGAHGISTVSTLSVAKLRSNQT 653 (1088)
Q Consensus 580 ~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~-~----~~~~~~~~~~~l~~~~-~~~g~hg~~~Vtsv~~~~~~~~~~ 653 (1088)
.-.|..+.++|+|++||..+..|- .|-.+... . +..+......+..++. .+...+....|.++.|.+.+.++.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 346899999999999999888654 44445431 1 1111111112222222 222222236799999998876667
Q ss_pred EEEEecCCCeEEEEEeecCCc
Q 001391 654 EIRSTGGDGCICYLEYDKDRE 674 (1088)
Q Consensus 654 ~l~t~g~Dg~i~iw~~~~~~~ 674 (1088)
+|+.=..|+++|+|++.....
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred eEEEEecCCEEEEEecCCCCC
Confidence 888888899999999975443
No 414
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=81.70 E-value=1.2e+02 Score=35.97 Aligned_cols=162 Identities=11% Similarity=0.113 Sum_probs=89.2
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe---CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS---GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~---d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
.||.+++|. .. ...+++.- +|.+++=| .+.+..|.. |+++.|.|......| .+||+-
T Consensus 20 HPvhGlaWT--DG----kqVvLT~L~l~~gE~kfGd---s~viGqFEh-----V~GlsW~P~~~~~~p------aLLAVQ 79 (671)
T PF15390_consen 20 HPVHGLAWT--DG----KQVVLTDLQLHNGEPKFGD---SKVIGQFEH-----VHGLSWAPPCTADTP------ALLAVQ 79 (671)
T ss_pred ccccceEec--CC----CEEEEEeeeeeCCccccCC---ccEeeccce-----eeeeeecCcccCCCC------ceEEEe
Confidence 578888887 32 34444432 46655533 356677764 999999976433333 689999
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeecc-CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEe
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP-RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~ 173 (1088)
-.+.|.||.+........+. .......+. ...---..+.|+| ....|++-..+..-.+.++.......+.
T Consensus 80 HkkhVtVWqL~~s~~e~~K~------l~sQtcEi~e~~pvLpQGCVWHP---k~~iL~VLT~~dvSV~~sV~~d~srVka 150 (671)
T PF15390_consen 80 HKKHVTVWQLCPSTTERNKL------LMSQTCEIREPFPVLPQGCVWHP---KKAILTVLTARDVSVLPSVHCDSSRVKA 150 (671)
T ss_pred ccceEEEEEeccCccccccc------eeeeeeeccCCcccCCCcccccC---CCceEEEEecCceeEeeeeeeCCceEEE
Confidence 99999999998433111110 001111110 0011124577899 8888877666555556666543333333
Q ss_pred ccCCceeEEEEeeecCCCCCcEEEEE-ecCCeEEEEEec
Q 001391 174 HSPERCLLYSMKLWGDNLEALRIASG-TIYNEIIVWKVD 211 (1088)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~~l~sg-~~dg~I~vwd~~ 211 (1088)
.-.....+.+.++ ..||..|+.+ +..=.-++||-.
T Consensus 151 Di~~~G~IhCACW---T~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 151 DIKTSGLIHCACW---TKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred eccCCceEEEEEe---cCcCCEEEEEeCCeEEEEEecCc
Confidence 3233445555555 3466655443 222234577754
No 415
>PHA02790 Kelch-like protein; Provisional
Probab=81.62 E-value=50 Score=39.42 Aligned_cols=100 Identities=11% Similarity=0.121 Sum_probs=46.5
Q ss_pred CCCEEEEEECC---CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcCCCceeEEE
Q 001391 267 CGSKLVSVSDD---RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMI 343 (1088)
Q Consensus 267 ~g~~l~s~s~D---g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~~~~~~~~~ 343 (1088)
+|+..+.|+.+ ..+..||..+.+. ..+. .+.........+.+.+.+.+.|+ .+.+||.....-..+
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W------~~~~--~m~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~ 430 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQW------QFGP--STYYPHYKSCALVFGRRLFLVGR---NAEFYCESSNTWTLI 430 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEE------EeCC--CCCCccccceEEEECCEEEEECC---ceEEecCCCCcEeEc
Confidence 45666666654 3467788877544 1111 11111111222334455555553 467788743322222
Q ss_pred ccc-CCCCeEEEEEcCCCCEEEEEeCC-----CCEEEEEcC
Q 001391 344 KEH-IGRGIWRCLYDSLSSLLVTAGFD-----SAIKVHQFQ 378 (1088)
Q Consensus 344 ~~h-~~~~V~~l~~~~dg~~l~tg~~D-----g~I~iwd~~ 378 (1088)
... ..+.-.+++. -++++.+.||.+ .++..||..
T Consensus 431 ~~m~~~r~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 431 DDPIYPRDNPELII-VDNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred CCCCCCccccEEEE-ECCEEEEECCcCCCcccceEEEEECC
Confidence 111 1111112232 356777888765 245566654
No 416
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=81.25 E-value=35 Score=41.40 Aligned_cols=114 Identities=11% Similarity=0.176 Sum_probs=64.3
Q ss_pred CCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEee--eCCCEEEEEcCCCcEEEEeCC
Q 001391 533 LGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDAS--FEDEVLFCGDLRGNLVLFPLL 610 (1088)
Q Consensus 533 ~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~s--pdg~~LatGs~dg~I~Iw~~~ 610 (1088)
.-++..++-+....+.|||..... ++....| .....|..++|. ||++.+.+-+-...|.+|.-.
T Consensus 39 s~~k~a~V~~~~~~LtIWD~~~~~------------lE~~~~f--~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 39 SIKKIAVVDSSRSELTIWDTRSGV------------LEYEESF--SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL 104 (631)
T ss_pred ccCcEEEEECCCCEEEEEEcCCcE------------EEEeeee--cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEcc
Confidence 355665555566799999998542 2222333 347789999986 788877777788888888643
Q ss_pred cccccccccccccccCcceeecccccccceeEEEEEeccCCceEEEEecCCCeEEEEE
Q 001391 611 RDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLE 668 (1088)
Q Consensus 611 ~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~ 668 (1088)
+.......+ .+..+..+.. . .|....|....|. .++..++.+| ..+.+++
T Consensus 105 R~dy~~~~p-~w~~i~~i~i-~-~~T~h~Igds~Wl---~~G~LvV~sG--Nqlfv~d 154 (631)
T PF12234_consen 105 RYDYTNKGP-SWAPIRKIDI-S-SHTPHPIGDSIWL---KDGTLVVGSG--NQLFVFD 154 (631)
T ss_pred chhhhcCCc-ccceeEEEEe-e-cCCCCCccceeEe---cCCeEEEEeC--CEEEEEC
Confidence 311100001 1112211211 1 2223568888998 5544443333 4455554
No 417
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=80.97 E-value=94 Score=35.87 Aligned_cols=151 Identities=15% Similarity=0.130 Sum_probs=84.2
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC
Q 001391 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 257 ~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~ 335 (1088)
+....+..++++.+++.+..-..++-||-..... +. ........+.++.+. +..++..+..|.+..=+-
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W------~~----~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d 308 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYW------QP----HNRASARRIQNMGWRADGGLWLLTRGGGLYVSKG 308 (398)
T ss_pred cceeeEEEcCCCCEEEEECCccEEEecCCCCcce------EE----ecCCCccceeeeeEcCCCCEEEEeCCceEEEecC
Confidence 4456677788887777665544444455332100 11 222334567788886 445555667787655444
Q ss_pred CCc-----eeEEEccc-CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCc
Q 001391 336 DGK-----QLKMIKEH-IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFS 409 (1088)
Q Consensus 336 ~~~-----~~~~~~~h-~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (1088)
.++ ........ ....+.++.+.+++.. +.+|.+|.+....-.++. |....
T Consensus 309 ~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~-~a~G~~G~v~~s~D~G~t-------------------W~~~~---- 364 (398)
T PLN00033 309 TGLTEEDFDFEEADIKSRGFGILDVGYRSKKEA-WAAGGSGILLRSTDGGKS-------------------WKRDK---- 364 (398)
T ss_pred CCCcccccceeecccCCCCcceEEEEEcCCCcE-EEEECCCcEEEeCCCCcc-------------------eeEcc----
Confidence 553 23333222 2225889999888765 455667766655433221 11100
Q ss_pred cceeeccCCCCceEEEEeccCCeEEEEecCCeEEEE
Q 001391 410 EQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHT 445 (1088)
Q Consensus 410 ~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~ 445 (1088)
....-......+.|.++++.++.+.+|.|+++
T Consensus 365 ----~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 365 ----GADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred ----ccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 00011134668888888899999999998754
No 418
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.31 E-value=74 Score=38.67 Aligned_cols=42 Identities=24% Similarity=0.238 Sum_probs=32.6
Q ss_pred CcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCC
Q 001391 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE 177 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~ 177 (1088)
..+..+.++| +.++|+-=..+|.|.+-+.+..+....+..+.
T Consensus 217 ~~~~ki~VS~---n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~ 258 (829)
T KOG2280|consen 217 SSVVKISVSP---NRRFLALYTETGKIWVVSIDLSQILCEFNCTD 258 (829)
T ss_pred ceEEEEEEcC---CcceEEEEecCCcEEEEecchhhhhhccCCCC
Confidence 4577788888 88888888889999988887777766665443
No 419
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=79.00 E-value=1.2e+02 Score=34.38 Aligned_cols=31 Identities=23% Similarity=0.074 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 001391 259 IFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (1088)
Q Consensus 259 V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~ 289 (1088)
..+..++|+.+.++-....+.|+--|+.+.+
T Consensus 83 ~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e 113 (386)
T PF14583_consen 83 TFGGFLSPDDRALYYVKNGRSLRRVDLDTLE 113 (386)
T ss_dssp TTT-EE-TTSSEEEEEETTTEEEEEETTT--
T ss_pred ccceEEecCCCeEEEEECCCeEEEEECCcCc
Confidence 4456677888887666666788888888854
No 420
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.21 E-value=25 Score=44.40 Aligned_cols=57 Identities=19% Similarity=0.199 Sum_probs=39.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD 318 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~ 318 (1088)
-....++++|+|.|+.++.|-..|++.-|...-.-. ..+..-... ...+|.+++|..
T Consensus 197 ~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik------~~ip~Pp~~-e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 197 VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK------SEIPEPPVE-ENYRVLSVTWLS 253 (1405)
T ss_pred cccceeeEEeccccceeeEecCCCeEEEeeccccee------ecccCCCcC-CCcceeEEEEec
Confidence 456789999999999999999999999887655311 111100111 157899999973
No 421
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=76.70 E-value=2.4e+02 Score=36.53 Aligned_cols=156 Identities=10% Similarity=0.132 Sum_probs=88.2
Q ss_pred CCeEEEecC---------CCCEEEEEEcC-----CCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEE
Q 001391 484 DDWVALGDG---------KGNMTIVRVVG-----DVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKL 549 (1088)
Q Consensus 484 ~~~la~g~~---------dg~I~iw~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~v 549 (1088)
..++++|.. .|.+.||++-. ++...+.+++..+..+..+.+ + .+..-+|.+ +++ ...+|.+
T Consensus 1046 k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtV-s--avceV~G~l-~~~-~GqKI~v 1120 (1366)
T KOG1896|consen 1046 KPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTV-S--AVCEVRGHL-LSS-QGQKIIV 1120 (1366)
T ss_pred cceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccce-E--EEEEeccEE-EEc-cCcEEEE
Confidence 467777754 58899999843 332333344333333322211 1 223345544 443 4567999
Q ss_pred EecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcce
Q 001391 550 WQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLN 629 (1088)
Q Consensus 550 wd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~ 629 (1088)
|+++...... +-.|. +..+--.+...=.++|..|+--..|....+..... ++..+.
T Consensus 1121 ~~l~r~~~li------------gVaFi---D~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~---------rlsL~s 1176 (1366)
T KOG1896|consen 1121 RKLDRDSELI------------GVAFI---DLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPY---------RLSLLS 1176 (1366)
T ss_pred EEeccCCcce------------eeEEe---ccceeEEehhhhhhheehhhhhhceEEEEEccCce---------EEEEee
Confidence 9995432111 11221 11122222223367899999999999887765311 222222
Q ss_pred eecccccccceeEEEEEeccCCceEEEEecCCCeEEEEEeecC
Q 001391 630 YFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKD 672 (1088)
Q Consensus 630 ~~~g~hg~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~ 672 (1088)
.- .. .-.++++.|.-.+.+ .+++.+.+|+.|.++-..+.
T Consensus 1177 rd--~~-~l~v~s~EFLVdg~~-L~flvsDa~rNi~vy~Y~Pe 1215 (1366)
T KOG1896|consen 1177 RD--FE-PLNVYSTEFLVDGSN-LSFLVSDADRNIHVYMYAPE 1215 (1366)
T ss_pred cC--Cc-hhhceeeeeEEcCCe-eEEEEEcCCCcEEEEEeCCC
Confidence 11 11 135889999976665 78999999999999998774
No 422
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=76.66 E-value=70 Score=30.32 Aligned_cols=110 Identities=11% Similarity=0.150 Sum_probs=65.9
Q ss_pred CCEEEEEe-CCeEEEEECCCC--------eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEec
Q 001391 35 LPFLLAGS-GSQVLLYDLEAG--------TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELN 105 (1088)
Q Consensus 35 ~~~laag~-d~~I~vwd~~tg--------~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~ 105 (1088)
..-|++++ .+.|.|++.... ..+..+...+ .|.+++-.+.. . .+. ...|+.+...++-.||+.
T Consensus 10 ~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~--~italaaG~l~--~-~~~---~D~LliGt~t~llaYDV~ 81 (136)
T PF14781_consen 10 HPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQ--EITALAAGRLK--P-DDG---RDCLLIGTQTSLLAYDVE 81 (136)
T ss_pred ceeEEEEecCCEEEEECCCccccccccccCceeEEECCC--ceEEEEEEecC--C-CCC---cCEEEEeccceEEEEEcc
Confidence 55677766 799999997632 2445555422 58888766421 0 122 267788888999999998
Q ss_pred cCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccC-CCCEEEEEEcCCcEEEEEcCCCce
Q 001391 106 FELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN-GNRSLAIGCSDNSIRVWDISNSSI 169 (1088)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~-d~~~lasgs~Dg~V~iWd~~~~~~ 169 (1088)
... --.++.-.+.|.++.+-.... +..++++| .+..|.-+|.+..+.
T Consensus 82 ~N~----------------d~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 82 NNS----------------DLFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEI 129 (136)
T ss_pred cCc----------------hhhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEE
Confidence 533 111233447788888854332 23445444 466677776654443
No 423
>PHA02790 Kelch-like protein; Provisional
Probab=76.57 E-value=1.1e+02 Score=36.34 Aligned_cols=62 Identities=8% Similarity=0.017 Sum_probs=31.3
Q ss_pred CCCEEEEEEcC--CcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCC---eEEEEEec
Q 001391 146 GNRSLAIGCSD--NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN---EIIVWKVD 211 (1088)
Q Consensus 146 d~~~lasgs~D--g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg---~I~vwd~~ 211 (1088)
++...+.||.+ .++..||..+.+....-..+..-...++.. -++.+.+.|+.++ .+..||..
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~----~~g~IYviGG~~~~~~~ve~ydp~ 384 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS----INNVIYVIGGHSETDTTTEYLLPN 384 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE----ECCEEEEecCcCCCCccEEEEeCC
Confidence 77777788754 457888876654432222121111112221 2455556666543 35566665
No 424
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.32 E-value=24 Score=44.51 Aligned_cols=131 Identities=14% Similarity=0.032 Sum_probs=75.7
Q ss_pred EEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC--CCEEEEEEeccCCCCC-CCCCCccccccceeeeccCCCCc
Q 001391 58 RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG--EKRVKLFELNFELSPN-SQYQPETCVNLSLVQSLPRLSHW 134 (1088)
Q Consensus 58 ~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g--d~~v~iw~l~~~~~~~-~~~~~~~~~~~~~~~~l~~h~~~ 134 (1088)
..+..+....|+.+... +|++ ...++.. +-.|..||++.-.... ..+. .++..+.......-
T Consensus 93 ~t~~v~k~~pi~~~v~~-------~D~t---~s~v~~tsng~~v~~fD~~~fs~s~~~~~~-----pl~~s~ts~ek~vf 157 (1405)
T KOG3630|consen 93 LTFKVEKEIPIVIFVCF-------HDAT---DSVVVSTSNGEAVYSFDLEEFSESRYETTV-----PLKNSATSFEKPVF 157 (1405)
T ss_pred cceeeeccccceEEEec-------cCCc---eEEEEEecCCceEEEEehHhhhhhhhhhcc-----ccccccchhccccc
Confidence 45566666566666666 6652 3333333 4578899987422100 0011 12222233333355
Q ss_pred EEEEEEecccCCC-CEEEEEEcCCcEEEEEcCCCce-EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEec
Q 001391 135 VFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNSSI-ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 135 I~~v~f~p~~~d~-~~lasgs~Dg~V~iWd~~~~~~-~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
..++.|+| .- ...|....|+.|++..+..... ... .+......++++ ++.|..++.|-..|++.-|...
T Consensus 158 ~~~~~wnP---~vp~n~av~l~dlsl~V~~~~~~~~~v~s--~p~t~~~Tav~W---SprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 158 QLKNVWNP---LVPLNSAVDLSDLSLRVKSTKQLAQNVTS--FPVTNSQTAVLW---SPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred cccccccC---Cccchhhhhccccchhhhhhhhhhhhhcc--cCcccceeeEEe---ccccceeeEecCCCeEEEeecc
Confidence 67888888 33 2356677899999887653322 122 233333444444 6889999999999999998876
No 425
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=76.03 E-value=1.3e+02 Score=33.18 Aligned_cols=283 Identities=12% Similarity=0.046 Sum_probs=121.9
Q ss_pred EecCCCceeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCC-e---eEEE-EeeeCCcceEEEEecccccccCCC
Q 001391 9 WRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG-T---LIRP-FQVFHGIRLHGISCNFINCTEGSV 83 (1088)
Q Consensus 9 Wdl~~g~~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg-~---~~~~-~~~~~~~~V~~i~~s~~~~~~~~d 83 (1088)
|......-..++..|.|. .+ ..-.++|..+.| +...+| + .+.. ...........|.|. .+
T Consensus 8 W~~v~l~t~~~l~dV~F~--d~----~~G~~VG~~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~-------~~ 72 (302)
T PF14870_consen 8 WQQVSLPTDKPLLDVAFV--DP----NHGWAVGAYGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFD-------GN 72 (302)
T ss_dssp EEEEE-S-SS-EEEEEES--SS----S-EEEEETTTEE--EEESSTTSS-EE-----S-----EEEEEEEE-------TT
T ss_pred cEEeecCCCCceEEEEEe--cC----CEEEEEecCCEE--EEECCCCccccccccCCCccceeeEEEEEec-------CC
Confidence 444433334578899998 54 567777887754 444333 2 2111 111112235667765 32
Q ss_pred ccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEE
Q 001391 84 STRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWD 163 (1088)
Q Consensus 84 ~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd 163 (1088)
...+++..+ +.+-..+... ..+.+..-..-......+.... ++..++ ++..|. ||.
T Consensus 73 -----~g~ivG~~g-~ll~T~DgG~------------tW~~v~l~~~lpgs~~~i~~l~---~~~~~l-~~~~G~--iy~ 128 (302)
T PF14870_consen 73 -----EGWIVGEPG-LLLHTTDGGK------------TWERVPLSSKLPGSPFGITALG---DGSAEL-AGDRGA--IYR 128 (302)
T ss_dssp -----EEEEEEETT-EEEEESSTTS------------S-EE----TT-SS-EEEEEEEE---TTEEEE-EETT----EEE
T ss_pred -----ceEEEcCCc-eEEEecCCCC------------CcEEeecCCCCCCCeeEEEEcC---CCcEEE-EcCCCc--EEE
Confidence 334444333 3233222111 1333221111122334444444 444333 333443 333
Q ss_pred cC-CCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccc
Q 001391 164 IS-NSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (1088)
Q Consensus 164 ~~-~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 242 (1088)
.. .++.-..+.......+..+.. ++++.+++++..-+...-||...
T Consensus 129 T~DgG~tW~~~~~~~~gs~~~~~r---~~dG~~vavs~~G~~~~s~~~G~------------------------------ 175 (302)
T PF14870_consen 129 TTDGGKTWQAVVSETSGSINDITR---SSDGRYVAVSSRGNFYSSWDPGQ------------------------------ 175 (302)
T ss_dssp ESSTTSSEEEEE-S----EEEEEE----TTS-EEEEETTSSEEEEE-TT-------------------------------
T ss_pred eCCCCCCeeEcccCCcceeEeEEE---CCCCcEEEEECcccEEEEecCCC------------------------------
Confidence 33 333333333333333444332 57888888876655566777540
Q ss_pred ccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeec--eeeeccCcceEEEEEC-CC
Q 001391 243 QHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNARVWDCCLT-DS 319 (1088)
Q Consensus 243 ~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~--~~~~~h~~~I~~v~~~-~~ 319 (1088)
..-.+. -+.-...|..+.|.|++...+.+ ..+.|++=+.... .+.... .....-.-.+.+++|. ++
T Consensus 176 -~~w~~~--~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~-------~~~w~~~~~~~~~~~~~~ld~a~~~~~ 244 (302)
T PF14870_consen 176 -TTWQPH--NRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDD-------GETWSEPIIPIKTNGYGILDLAYRPPN 244 (302)
T ss_dssp -SS-EEE--E--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTE-------EEEE---B-TTSS--S-EEEEEESSSS
T ss_pred -ccceEE--ccCccceehhceecCCCCEEEEe-CCcEEEEccCCCC-------ccccccccCCcccCceeeEEEEecCCC
Confidence 011111 12345789999999998876655 8888888772221 111110 0111122347899998 56
Q ss_pred EEEEEeCCCcEEEEcCCCceeEEEcc--cCCCCeEEEEEcCCCCEEEEEeCCCCEEEE
Q 001391 320 FIITAGEDCTCRVWGSDGKQLKMIKE--HIGRGIWRCLYDSLSSLLVTAGFDSAIKVH 375 (1088)
Q Consensus 320 ~l~sg~~Dg~i~vWd~~~~~~~~~~~--h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iw 375 (1088)
.+..++..|++.+=.-.|+.-+..+. .....+..+.|.++.+ -..-|.+|.+.-|
T Consensus 245 ~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~-gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 245 EIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK-GFVLGQDGVLLRY 301 (302)
T ss_dssp -EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTE-EEEE-STTEEEEE
T ss_pred CEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCc-eEEECCCcEEEEe
Confidence 66667777777654446665555543 1112488898876544 4445678876544
No 426
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=75.46 E-value=1.1e+02 Score=31.91 Aligned_cols=90 Identities=8% Similarity=-0.057 Sum_probs=48.8
Q ss_pred CCCeEEEecCCCCEEEEE--EcCCCcC-cceeeeeeeeccccce-eeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCc
Q 001391 483 IDDWVALGDGKGNMTIVR--VVGDVHT-PQLSFTFTWSAGIERQ-LLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSS 558 (1088)
Q Consensus 483 ~~~~la~g~~dg~I~iw~--~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~ 558 (1088)
...+..+-+.+-+|.-|+ ..++... ++..+...-....+.. .-+ .+...+|+..++.-..++|...|..+++.
T Consensus 169 ~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDG--m~ID~eG~L~Va~~ng~~V~~~dp~tGK~- 245 (310)
T KOG4499|consen 169 AKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDG--MTIDTEGNLYVATFNGGTVQKVDPTTGKI- 245 (310)
T ss_pred CcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCc--ceEccCCcEEEEEecCcEEEEECCCCCcE-
Confidence 345666777777887777 4555432 2222222111111110 111 23445677777777778888888876642
Q ss_pred ccccCCcccceeeeeeeccccCceEEEEEee
Q 001391 559 VCYESSKTNNVFLVAEFSSCFGARIMCLDAS 589 (1088)
Q Consensus 559 ~~~~~~~~~~~~l~~~~~~~h~~~It~l~~s 589 (1088)
..++..+ ..+|+|++|-
T Consensus 246 -------------L~eiklP-t~qitsccFg 262 (310)
T KOG4499|consen 246 -------------LLEIKLP-TPQITSCCFG 262 (310)
T ss_pred -------------EEEEEcC-CCceEEEEec
Confidence 2233323 6679999987
No 427
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.37 E-value=26 Score=45.06 Aligned_cols=144 Identities=18% Similarity=0.167 Sum_probs=82.5
Q ss_pred ecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEE--------cCCCCEE
Q 001391 200 TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEW--------SSCGSKL 271 (1088)
Q Consensus 200 ~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~--------sp~g~~l 271 (1088)
+.|+.+.+|+.+ +....+.+.+-+..|..|.. -|.=+++
T Consensus 96 TiDn~L~lWny~---------------------------------~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~Iqhl 142 (1311)
T KOG1900|consen 96 TIDNNLFLWNYE---------------------------------SDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHL 142 (1311)
T ss_pred EeCCeEEEEEcC---------------------------------CCCccccccchhhhheeeeeecCCCCcchhhhhee
Confidence 568999999998 33334444455555555543 2333444
Q ss_pred EEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC-----CC---c-e--
Q 001391 272 VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-----DG---K-Q-- 339 (1088)
Q Consensus 272 ~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-----~~---~-~-- 339 (1088)
+..+.--.|.++-+.-......... ....+...-....|.|+... ++.|.-+|.|| .+|.+ +| + +
T Consensus 143 LvvaT~~ei~ilgV~~~~~~~~~~~-f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~K 219 (1311)
T KOG1900|consen 143 LVVATPVEIVILGVSFDEFTGELSI-FNTSFKISVDGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRK 219 (1311)
T ss_pred EEecccceEEEEEEEeccccCcccc-cccceeeecCCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhccccc
Confidence 4444444566665543322100000 00001222334567888865 56677777788 55654 11 1 0
Q ss_pred --------------eEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 340 --------------LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 340 --------------~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+-.+.+...++|..+++....+.+.+-+..|+|.+|++.+
T Consensus 220 iclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 220 ICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 1122222234899999999889999999999999999954
No 428
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=74.87 E-value=1.5e+02 Score=33.31 Aligned_cols=58 Identities=17% Similarity=0.157 Sum_probs=34.2
Q ss_pred cEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce---EEEec---cCCceeEEEEeeecCCCCCcEE
Q 001391 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI---ILEVH---SPERCLLYSMKLWGDNLEALRI 196 (1088)
Q Consensus 134 ~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~---~~~~~---~~~~~~~~s~~~~~~s~~~~~l 196 (1088)
.-++|+|.| |+++++ +...|.|++++ ..+.. +..+. ......+..+++++.-+....|
T Consensus 3 ~P~~~a~~p---dG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~l 66 (331)
T PF07995_consen 3 NPRSMAFLP---DGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYL 66 (331)
T ss_dssp SEEEEEEET---TSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EE
T ss_pred CceEEEEeC---CCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEE
Confidence 357899999 987766 45699999999 44433 22321 2223456677776543333333
No 429
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=73.09 E-value=17 Score=37.33 Aligned_cols=71 Identities=11% Similarity=0.071 Sum_probs=48.0
Q ss_pred eeCCcceEEEEeccccccc-CCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEE
Q 001391 62 VFHGIRLHGISCNFINCTE-GSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCF 140 (1088)
Q Consensus 62 ~~~~~~V~~i~~s~~~~~~-~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f 140 (1088)
.|.++.|.....-|..+.. ++| .++++.+.+.|.+|++..+. .++...+..- +.|..+.+
T Consensus 7 ~F~sQ~v~~~~~EP~~~c~~g~d-----~Lfva~~g~~Vev~~l~~~~-------------~~~~~~F~Tv-~~V~~l~y 67 (215)
T PF14761_consen 7 PFGSQNVVPCEQEPTAVCCGGPD-----ALFVAASGCKVEVYDLEQEE-------------CPLLCTFSTV-GRVLQLVY 67 (215)
T ss_pred ccCCceeeccccCcceeeccCCc-----eEEEEcCCCEEEEEEcccCC-------------CceeEEEcch-hheeEEEe
Confidence 3444455555544443222 235 67777888999999999433 4556666544 78999999
Q ss_pred ecccCCCCEEEEEE
Q 001391 141 LKVCNGNRSLAIGC 154 (1088)
Q Consensus 141 ~p~~~d~~~lasgs 154 (1088)
+. .|++|+|-=
T Consensus 68 ~~---~GDYlvTlE 78 (215)
T PF14761_consen 68 SE---AGDYLVTLE 78 (215)
T ss_pred cc---ccceEEEEE
Confidence 99 999999963
No 430
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.07 E-value=1.1e+02 Score=35.06 Aligned_cols=114 Identities=12% Similarity=0.154 Sum_probs=70.9
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCe----eEEEEeeeCCcceEEEEecccccccCCCccceeeEE
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT----LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~----~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~l 91 (1088)
.|+|.++.|| +| .+.||+-- +.+|.+++....+ ..++.+. ....|+|..|+ .. .-+
T Consensus 66 ~G~I~SIkFS--lD----nkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~-k~~~IlGF~W~-------~s-----~e~ 126 (657)
T KOG2377|consen 66 KGEIKSIKFS--LD----NKILAVQRTSKTVDFCNFIPDNSQLEYTQECKT-KNANILGFCWT-------SS-----TEI 126 (657)
T ss_pred CCceeEEEec--cC----cceEEEEecCceEEEEecCCCchhhHHHHHhcc-CcceeEEEEEe-------cC-----eeE
Confidence 3789999999 99 77777744 7999999974322 2233333 23359999998 33 445
Q ss_pred EEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCC--EEEEEEcCCcEEEEEcCC
Q 001391 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNR--SLAIGCSDNSIRVWDISN 166 (1088)
Q Consensus 92 a~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~--~lasgs~Dg~V~iWd~~~ 166 (1088)
|.-.+.-+-+|..... ...++..+.|.-.|.--.|.+ +-. +|+|+-..+++.=+.+.+
T Consensus 127 A~i~~~G~e~y~v~pe--------------krslRlVks~~~nvnWy~yc~---et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 127 AFITDQGIEFYQVLPE--------------KRSLRLVKSHNLNVNWYMYCP---ETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred EEEecCCeEEEEEchh--------------hhhhhhhhhcccCccEEEEcc---ccceEeeeccccccccccEEEee
Confidence 5555666777776643 233445556777777777877 555 344443444444444443
No 431
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=71.89 E-value=1.3e+02 Score=31.31 Aligned_cols=48 Identities=8% Similarity=0.135 Sum_probs=35.9
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC
Q 001391 261 RIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD 318 (1088)
Q Consensus 261 ~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~ 318 (1088)
+++...+|...+++-..++|...|..+++. +. .+.-...+|+++||.+
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~--------L~--eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKI--------LL--EIKLPTPQITSCCFGG 263 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCCCcE--------EE--EEEcCCCceEEEEecC
Confidence 345566788888888889999999999754 22 3333478899999984
No 432
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=71.45 E-value=66 Score=37.10 Aligned_cols=119 Identities=11% Similarity=0.136 Sum_probs=69.8
Q ss_pred EecCCCceeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCe-----eEEEEeee-CCcceEEEEecccccccCC
Q 001391 9 WRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGT-----LIRPFQVF-HGIRLHGISCNFINCTEGS 82 (1088)
Q Consensus 9 Wdl~~g~~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~-----~~~~~~~~-~~~~V~~i~~s~~~~~~~~ 82 (1088)
|...+......++++.|. ++ +.+++++.+|.+.. ....|+ ........ ....+.++.|. +
T Consensus 272 W~~~~~~~~~~l~~v~~~--~d----g~l~l~g~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~-------~ 337 (398)
T PLN00033 272 WQPHNRASARRIQNMGWR--AD----GGLWLLTRGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYR-------S 337 (398)
T ss_pred eEEecCCCccceeeeeEc--CC----CCEEEEeCCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEc-------C
Confidence 343333334568899999 88 88999998877554 334443 22222221 22348888888 6
Q ss_pred CccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEE
Q 001391 83 VSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVW 162 (1088)
Q Consensus 83 d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iW 162 (1088)
++ ..++++..|.+....-. .. .++.......-....+.+.|.+ +++..++| .+|.|.-|
T Consensus 338 d~----~~~a~G~~G~v~~s~D~-G~------------tW~~~~~~~~~~~~ly~v~f~~---~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 338 KK----EAWAAGGSGILLRSTDG-GK------------SWKRDKGADNIAANLYSVKFFD---DKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CC----cEEEEECCCcEEEeCCC-Cc------------ceeEccccCCCCcceeEEEEcC---CCceEEEe-CCcEEEEe
Confidence 65 67777777766655322 11 1233322233446788999976 66655554 67776554
No 433
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=70.70 E-value=5.3 Score=48.51 Aligned_cols=123 Identities=13% Similarity=0.050 Sum_probs=75.0
Q ss_pred eccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcC--CCceEE----EeccCCceeEEEEeeecCCCCCcEEEEEe
Q 001391 127 SLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS--NSSIIL----EVHSPERCLLYSMKLWGDNLEALRIASGT 200 (1088)
Q Consensus 127 ~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~--~~~~~~----~~~~~~~~~~~s~~~~~~s~~~~~l~sg~ 200 (1088)
-+++..+.|-.++|-.. +...++ -.-|.+.|||+. .|+... +...+.+....-+.++..-++..++..+.
T Consensus 127 l~kgf~G~v~dl~fah~--~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~ 202 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHT--KCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGL 202 (1283)
T ss_pred HHhcCCCCccccccccc--CChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeecc
Confidence 34677888888888531 222222 223567888875 344332 22233333333333444455667888888
Q ss_pred cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEE-----------EEcCCCC
Q 001391 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRI-----------EWSSCGS 269 (1088)
Q Consensus 201 ~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v-----------~~sp~g~ 269 (1088)
.+++|++..+.+.. ...+.+|..++..+ ..+|||+
T Consensus 203 ~~~~i~lL~~~ra~----------------------------------~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt 248 (1283)
T KOG1916|consen 203 KGGEIRLLNINRAL----------------------------------RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGT 248 (1283)
T ss_pred CCCceeEeeechHH----------------------------------HHHHHhcCCCcccHHHHhhchhhheeeCCCCc
Confidence 89999887776111 11233465555443 2689999
Q ss_pred EEEEEECCCcEEEEEcCC
Q 001391 270 KLVSVSDDRSARIWEVRA 287 (1088)
Q Consensus 270 ~l~s~s~Dg~v~iWd~~~ 287 (1088)
.++.++.||.+++|.+.-
T Consensus 249 v~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 249 VFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred EEEEeecCCccceeeeee
Confidence 999999999999998753
No 434
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=70.65 E-value=45 Score=38.45 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=41.2
Q ss_pred ceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCC
Q 001391 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE 177 (1088)
Q Consensus 123 ~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~ 177 (1088)
.....+......+.++..+| ++++.|+...=|.|.++|+.++..+...++-.
T Consensus 298 ~~r~~l~D~~R~~~~i~~sP---~~~laA~tDslGRV~LiD~~~~~vvrmWKGYR 349 (415)
T PF14655_consen 298 PMRFGLPDSKREGESICLSP---SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYR 349 (415)
T ss_pred ceEEeeccCCceEEEEEECC---CCCEEEEEcCCCcEEEEECCCChhhhhhccCc
Confidence 34445555667799999999 99998888778999999999998877766543
No 435
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=69.65 E-value=19 Score=37.73 Aligned_cols=75 Identities=9% Similarity=0.056 Sum_probs=48.9
Q ss_pred ecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeee---eccccCceEEEEEeeeCCCEEEEEcCCCcEEEE
Q 001391 531 KSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAE---FSSCFGARIMCLDASFEDEVLFCGDLRGNLVLF 607 (1088)
Q Consensus 531 ~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~---~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw 607 (1088)
+...+++|.+-..+|.+++||+...+..-... --.++... ........|+.+.++.+|.-|++ -.+|..+.|
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~----Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~-lsng~~y~y 92 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPV----SIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT-LSNGDSYSY 92 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCc----cHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE-EeCCCEEEe
Confidence 44577889999999999999998664321110 00001100 00034677999999988887765 456899999
Q ss_pred eCC
Q 001391 608 PLL 610 (1088)
Q Consensus 608 ~~~ 610 (1088)
+.+
T Consensus 93 ~~~ 95 (219)
T PF07569_consen 93 SPD 95 (219)
T ss_pred ccc
Confidence 866
No 436
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=69.27 E-value=2 Score=48.63 Aligned_cols=150 Identities=20% Similarity=0.306 Sum_probs=95.1
Q ss_pred EEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCc-EEEEEecCCeEEEEEeccCc
Q 001391 136 FDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEH 214 (1088)
Q Consensus 136 ~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~-~l~sg~~dg~I~vwd~~~~~ 214 (1088)
....|-| .+.-++.++.+..+..||-. ++.......+..++ .+++ +.++. .++.+-..+.+.+||+.++.
T Consensus 38 i~~~w~~---e~~nlavaca~tiv~~YD~a-gq~~le~n~tg~al--dm~w---DkegdvlavlAek~~piylwd~n~ey 108 (615)
T KOG2247|consen 38 IIHRWRP---EGHNLAVACANTIVIYYDKA-GQVILELNPTGKAL--DMAW---DKEGDVLAVLAEKTGPIYLWDVNSEY 108 (615)
T ss_pred ceeeEec---CCCceehhhhhhHHHhhhhh-cceecccCCchhHh--hhhh---ccccchhhhhhhcCCCeeechhhhhh
Confidence 3455666 55558888889999999853 34444433333322 2222 12333 33445677899999997211
Q ss_pred cccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe-CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCC
Q 001391 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS 293 (1088)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~ 293 (1088)
. ..+ .+. .|.... +.|++....++.+-..+.++|++..+.+.
T Consensus 109 t-------------------------------qqL-E~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~--- 151 (615)
T KOG2247|consen 109 T-------------------------------QQL-ESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRR--- 151 (615)
T ss_pred H-------------------------------HHH-hccCcchHHH--HhhccCCccccccccccceEEEeccchhh---
Confidence 0 011 111 122222 67888888888888999999999988543
Q ss_pred CCceeeeceeeec-cCcceEEEEEC-CCEEEEEeCCCcEEEEcCCCce
Q 001391 294 DSIEEVGSSVLYG-HNARVWDCCLT-DSFIITAGEDCTCRVWGSDGKQ 339 (1088)
Q Consensus 294 ~~~~~i~~~~~~~-h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~~~~~ 339 (1088)
....| |..++.++++. .++.+.++.|..+.+-...++.
T Consensus 152 --------iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~~qeget 191 (615)
T KOG2247|consen 152 --------IIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVTTQEGET 191 (615)
T ss_pred --------hhhhcccccceeEEEecccceeeecCcHHHHHHhhhccce
Confidence 24456 99999999998 7889999988877665544433
No 437
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=68.99 E-value=15 Score=27.12 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=25.9
Q ss_pred CCEEEEEEcCCC---CEEEEEECCCcEEEEEcCC
Q 001391 257 GSIFRIEWSSCG---SKLVSVSDDRSARIWEVRA 287 (1088)
Q Consensus 257 ~~V~~v~~sp~g---~~l~s~s~Dg~v~iWd~~~ 287 (1088)
+.|.++.|+|+. .+|+.+-.-+.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999855 4788888889999999985
No 438
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=68.62 E-value=2.7e+02 Score=33.62 Aligned_cols=115 Identities=10% Similarity=0.048 Sum_probs=59.3
Q ss_pred CEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccC---CCccceeeEEEEECCCEEEEEEeccCCCCCC
Q 001391 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEG---SVSTRVTFEVALFGEKRVKLFELNFELSPNS 112 (1088)
Q Consensus 36 ~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~---~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~ 112 (1088)
.+.++..++.|+-.|.++|+++-++.......+......+. ...+ -++ .+++...++.+.-.|.++..
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~-~~rg~av~~~----~v~v~t~dg~l~ALDa~TGk---- 141 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDV-VNRGVALYDG----KVFFGTLDARLVALDAKTGK---- 141 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCccccccccccc-ccccceEECC----EEEEEcCCCEEEEEECCCCC----
Confidence 34443446889999999999998876422111211000000 0000 122 55666668888888876543
Q ss_pred CCCCccccccceeeec--cCCC--CcEEEEEEecccCCCCEEEEEE------cCCcEEEEEcCCCceEEEec
Q 001391 113 QYQPETCVNLSLVQSL--PRLS--HWVFDVCFLKVCNGNRSLAIGC------SDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 113 ~~~~~~~~~~~~~~~l--~~h~--~~I~~v~f~p~~~d~~~lasgs------~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.+-.. ..+. ..+.+ +|.-.++ .++++. .+|.|.-+|.++|+.+-+..
T Consensus 142 -----------~~W~~~~~~~~~~~~~ts---sP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 142 -----------VVWSKKNGDYKAGYTITA---APLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred -----------EEeecccccccccccccC---CcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 11111 1111 01111 1111133 444443 26899999999999876654
No 439
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=66.18 E-value=1.1e+02 Score=29.04 Aligned_cols=112 Identities=11% Similarity=0.044 Sum_probs=64.5
Q ss_pred CCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcC----
Q 001391 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS---- 266 (1088)
Q Consensus 191 ~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp---- 266 (1088)
.....|+.++.-|.|.|.+.......... ....+..+ .-...|++|+-.+
T Consensus 8 G~~pcL~~aT~~gKV~IH~ph~~~~~~~~-------------------------~~~~i~~L-Nin~~italaaG~l~~~ 61 (136)
T PF14781_consen 8 GVHPCLACATTGGKVFIHNPHERGQRTGR-------------------------QDSDISFL-NINQEITALAAGRLKPD 61 (136)
T ss_pred CCceeEEEEecCCEEEEECCCcccccccc-------------------------ccCceeEE-ECCCceEEEEEEecCCC
Confidence 34457888888899999987621111000 11122222 2345666665433
Q ss_pred -CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-----CCEEEEEeCCCcEEEEcCCCcee
Q 001391 267 -CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-----DSFIITAGEDCTCRVWGSDGKQL 340 (1088)
Q Consensus 267 -~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-----~~~l~sg~~Dg~i~vWd~~~~~~ 340 (1088)
+...|+.|+.. ++..||+..... . -...-+..|.++.+. +.-++..+.++.|.-||.+|..+
T Consensus 62 ~~~D~LliGt~t-~llaYDV~~N~d-------~----Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 62 DGRDCLLIGTQT-SLLAYDVENNSD-------L----FYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred CCcCEEEEeccc-eEEEEEcccCch-------h----hhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence 34567777664 789999988643 1 222334566676663 34455555688888888866543
No 440
>PRK10115 protease 2; Provisional
Probab=63.58 E-value=3.8e+02 Score=33.57 Aligned_cols=112 Identities=10% Similarity=0.064 Sum_probs=62.1
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEeC------CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEE
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGSG------SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~d------~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~l 91 (1088)
-.+..+.+| || +++|+-+.| -.|+|.|+.+|+.+...- .+.+ ..++|+ +|++ .++
T Consensus 127 ~~l~~~~~S--pd----g~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--~~~~-~~~~w~-------~D~~---~~~ 187 (686)
T PRK10115 127 YTLGGMAIT--PD----NTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--DNVE-PSFVWA-------NDSW---TFY 187 (686)
T ss_pred EEEeEEEEC--CC----CCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--cCcc-eEEEEe-------eCCC---EEE
Confidence 457788899 99 889988764 379999999886442221 2222 458888 6652 344
Q ss_pred EEEC-C-----CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEE-EEEEecccCCCCEEEEEEc---CCcEEE
Q 001391 92 ALFG-E-----KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVF-DVCFLKVCNGNRSLAIGCS---DNSIRV 161 (1088)
Q Consensus 92 a~~g-d-----~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~-~v~f~p~~~d~~~lasgs~---Dg~V~i 161 (1088)
.+.- + ..|..+++.+... .-.++.. ....... .+..+. ++++++..+. ++.+.+
T Consensus 188 y~~~~~~~~~~~~v~~h~lgt~~~-----------~d~lv~~--e~~~~~~~~~~~s~---d~~~l~i~~~~~~~~~~~l 251 (686)
T PRK10115 188 YVRKHPVTLLPYQVWRHTIGTPAS-----------QDELVYE--EKDDTFYVSLHKTT---SKHYVVIHLASATTSEVLL 251 (686)
T ss_pred EEEecCCCCCCCEEEEEECCCChh-----------HCeEEEe--eCCCCEEEEEEEcC---CCCEEEEEEECCccccEEE
Confidence 4432 2 3456666654310 0122322 2222222 333343 6666555433 456888
Q ss_pred EEc
Q 001391 162 WDI 164 (1088)
Q Consensus 162 Wd~ 164 (1088)
++.
T Consensus 252 ~~~ 254 (686)
T PRK10115 252 LDA 254 (686)
T ss_pred EEC
Confidence 885
No 441
>PF12053 DUF3534: Domain of unknown function (DUF3534); InterPro: IPR021922 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 150 amino acids in length. This domain is found associated with PF00595 from PFAM. This domain has a conserved GILD sequence motif. ; PDB: 2NS5_A.
Probab=62.59 E-value=6 Score=37.82 Aligned_cols=22 Identities=59% Similarity=1.139 Sum_probs=17.0
Q ss_pred ceEEEE----EEEeecchhhhhhhhc
Q 001391 1021 RLTVCF----VVVACSDATLALRALI 1042 (1088)
Q Consensus 1021 ~~~~~~----~~~~~~~~~~~~~~~~ 1042 (1088)
|+|||| |||-|.|+++++|-|+
T Consensus 2 kvtV~fg~~~vvVPC~dg~~tV~~L~ 27 (145)
T PF12053_consen 2 KVTVCFGRTRVVVPCGDGQLTVRDLI 27 (145)
T ss_dssp EEEEEETTEEEEEEESSS---HHHHH
T ss_pred eEEEEeCCeEEEEEeCCCCccHHHHH
Confidence 689999 9999999999988775
No 442
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=62.56 E-value=88 Score=36.15 Aligned_cols=59 Identities=12% Similarity=0.108 Sum_probs=45.3
Q ss_pred CCEEEEEeCCCcEEEEcCCCceeEE-EcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 318 DSFIITAGEDCTCRVWGSDGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 318 ~~~l~sg~~Dg~i~vWd~~~~~~~~-~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
..+++.|+..|-||+||.-|...++ +.+.. ..|-.+....+|.++++.+. ..+.+-|+.
T Consensus 573 sGyIa~as~kGDirLyDRig~rAKtalP~lG-~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLG-DAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred CceEEEecCCCceeeehhhcchhhhcCcccc-cceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 6799999999999999986655544 44444 47999999999998776664 467777764
No 443
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=62.48 E-value=45 Score=34.98 Aligned_cols=87 Identities=15% Similarity=0.136 Sum_probs=51.9
Q ss_pred EcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEE
Q 001391 356 YDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI 435 (1088)
Q Consensus 356 ~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~ 435 (1088)
+..++.+|++-..+|.+.+||+......- .... -..++.... ... ......|..+.++.+|..++
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~-~~~S-------i~pll~~~~--~~~-----~~~~~~i~~~~lt~~G~PiV 82 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVL-PPVS-------IAPLLNSSP--VSD-----KSSSPNITSCSLTSNGVPIV 82 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeecc-CCcc-------HHHHhcccc--ccc-----CCCCCcEEEEEEcCCCCEEE
Confidence 44567889999999999999996532100 0000 000110000 000 03345788999999998888
Q ss_pred EecCCeEEEEEeccCCcceeEEeee
Q 001391 436 ATNHGYLYHTKLCDMDSVNWNKILQ 460 (1088)
Q Consensus 436 ~t~~g~i~~~~~~~~~~~~~~~~~~ 460 (1088)
..++|..| .|+..-..|.++.+
T Consensus 83 ~lsng~~y---~y~~~L~~W~~vsd 104 (219)
T PF07569_consen 83 TLSNGDSY---SYSPDLGCWIRVSD 104 (219)
T ss_pred EEeCCCEE---EeccccceeEEecc
Confidence 88888888 45555566866644
No 444
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=62.36 E-value=1.8e+02 Score=33.33 Aligned_cols=105 Identities=11% Similarity=0.018 Sum_probs=54.9
Q ss_pred CCEEEEEEcCCCCEEEEEE-----------CCC-cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEE
Q 001391 257 GSIFRIEWSSCGSKLVSVS-----------DDR-SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIIT 323 (1088)
Q Consensus 257 ~~V~~v~~sp~g~~l~s~s-----------~Dg-~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~s 323 (1088)
.....|+|.++|+.+++.. ..+ .|.+++-.++.- ...... .+...-.....+++. +. |+.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG----~~d~~~--vfa~~l~~p~Gi~~~~~G-lyV 86 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDG----KYDKSN--VFAEELSMVTGLAVAVGG-VYV 86 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCC----CcceeE--EeecCCCCccceeEecCC-EEE
Confidence 4567899999999877753 223 566665433210 011221 222223345677776 44 555
Q ss_pred EeCCCcEEEEcCCC------ce--e-EEEccc---CCCCeEEEEEcCCCCEEEEEeC
Q 001391 324 AGEDCTCRVWGSDG------KQ--L-KMIKEH---IGRGIWRCLYDSLSSLLVTAGF 368 (1088)
Q Consensus 324 g~~Dg~i~vWd~~~------~~--~-~~~~~h---~~~~V~~l~~~~dg~~l~tg~~ 368 (1088)
+......++.+.++ +. + ..+... .......+++.|||.+.++-+.
T Consensus 87 ~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~ 143 (367)
T TIGR02604 87 ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGN 143 (367)
T ss_pred eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEeccc
Confidence 55554444546532 21 1 112221 0113678999999987666553
No 445
>PRK13616 lipoprotein LpqB; Provisional
Probab=61.94 E-value=3.8e+02 Score=32.90 Aligned_cols=67 Identities=13% Similarity=0.180 Sum_probs=34.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeec--cCcceEEEEECCCEEEEEeCCCcEE
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG--HNARVWDCCLTDSFIITAGEDCTCR 331 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~--h~~~I~~v~~~~~~l~sg~~Dg~i~ 331 (1088)
-...+..+.|.+++..+ .+..++...+|.+.-... ... .+.. ....+..++-.+..++....+|.+.
T Consensus 495 l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~-----~~~----~~~~~n~~~~v~~vaa~~~~iyv~~~~g~~~ 563 (591)
T PRK13616 495 LGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGS-----NSD----ALPSRNLSAPVVAVAASPSTVYVTDARAVLQ 563 (591)
T ss_pred cCCccccceEecCCEEE-EEecCCCCceEEEecCCc-----ccc----ccCCCCccCceEEEecCCceEEEEcCCceEE
Confidence 33446889999998855 444444445565443211 000 1111 2445666665554555555555433
No 446
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.72 E-value=3.1e+02 Score=31.54 Aligned_cols=102 Identities=15% Similarity=0.194 Sum_probs=67.5
Q ss_pred CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC-CEEEEEeCCCcEEE
Q 001391 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-SFIITAGEDCTCRV 332 (1088)
Q Consensus 254 gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~-~~l~sg~~Dg~i~v 332 (1088)
..+++|.++.|++|.+.++.--.|++|.+++....+. ..... ..-...+..|...+|.. .-++.-... -+-+
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~-----~l~~~-~~ck~k~~~IlGF~W~~s~e~A~i~~~-G~e~ 136 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNS-----QLEYT-QECKTKNANILGFCWTSSTEIAFITDQ-GIEF 136 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCch-----hhHHH-HHhccCcceeEEEEEecCeeEEEEecC-CeEE
Confidence 4567999999999999999999999999999855322 11110 12233345578888873 334444433 3556
Q ss_pred EcC--CCceeEEEcccCCCCeEEEEEcCCCCEE
Q 001391 333 WGS--DGKQLKMIKEHIGRGIWRCLYDSLSSLL 363 (1088)
Q Consensus 333 Wd~--~~~~~~~~~~h~~~~V~~l~~~~dg~~l 363 (1088)
|.. ..+.++..+.|.. .|.--.|.++.+.+
T Consensus 137 y~v~pekrslRlVks~~~-nvnWy~yc~et~v~ 168 (657)
T KOG2377|consen 137 YQVLPEKRSLRLVKSHNL-NVNWYMYCPETAVI 168 (657)
T ss_pred EEEchhhhhhhhhhhccc-CccEEEEccccceE
Confidence 655 4455666677776 58888888887743
No 447
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=60.06 E-value=3.1e+02 Score=31.31 Aligned_cols=204 Identities=12% Similarity=0.097 Sum_probs=95.0
Q ss_pred CEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEc----CCCC---EEEEEeCC---CCEEEEEcCCCCCCcccCC
Q 001391 319 SFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYD----SLSS---LLVTAGFD---SAIKVHQFQAFLPGSLESH 388 (1088)
Q Consensus 319 ~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~----~dg~---~l~tg~~D---g~I~iwd~~~~~~~~~~~~ 388 (1088)
.+|+....++-+.+||+.|+.++.+.. + .+..+..- -+|+ ++++..++ .+|++|.+....
T Consensus 69 SlIigTdK~~GL~VYdL~Gk~lq~~~~--G-r~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~------- 138 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLDGKELQSLPV--G-RPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDT------- 138 (381)
T ss_dssp -EEEEEETTTEEEEEETTS-EEEEE-S--S--EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTT-------
T ss_pred ceEEEEeCCCCEEEEcCCCcEEEeecC--C-CcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCC-------
Confidence 578888889999999999999988752 3 24444432 1333 23444443 469999884210
Q ss_pred ccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEe--cc-CCe--EEEEecCCeEEEEEeccCCcc--eeEEeeee
Q 001391 389 PEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHL--TS-EDT--LYIATNHGYLYHTKLCDMDSV--NWNKILQV 461 (1088)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~--s~-~~~--ll~~t~~g~i~~~~~~~~~~~--~~~~~~~~ 461 (1088)
..+-.+..+.. .+ ......+..+|+ ++ +|. .++...+|.+..|.+...... .-+.+.+.
T Consensus 139 ---------g~L~~v~~~~~--p~---~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f 204 (381)
T PF02333_consen 139 ---------GELTDVTDPAA--PI---ATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF 204 (381)
T ss_dssp ---------TEEEE-CBTTC---E---E-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE
T ss_pred ---------CcceEcCCCCc--cc---ccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe
Confidence 00111110000 00 000112445554 33 343 344567888888888765443 22334344
Q ss_pred cCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCC-CeE-EE
Q 001391 462 SEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLG-HRF-IF 539 (1088)
Q Consensus 462 ~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-g~~-L~ 539 (1088)
.-..++-.+.+... ...|.+|-++--|.-|+.+...-.....+...........+-++-.....+ ..| |+
T Consensus 205 ~~~sQ~EGCVVDDe--------~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLiv 276 (381)
T PF02333_consen 205 KVGSQPEGCVVDDE--------TGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIV 276 (381)
T ss_dssp E-SS-EEEEEEETT--------TTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEE
T ss_pred cCCCcceEEEEecc--------cCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEE
Confidence 43445555555433 268888888876666655432211111111100001111122222222233 234 55
Q ss_pred EECCCCeEEEEecCC
Q 001391 540 TADPKGRLKLWQLCD 554 (1088)
Q Consensus 540 s~~~dg~i~vwd~~~ 554 (1088)
+.-.++.+.+|+.+.
T Consensus 277 SsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 277 SSQGDNSFAVYDREG 291 (381)
T ss_dssp EEGGGTEEEEEESST
T ss_pred EcCCCCeEEEEecCC
Confidence 666788999999774
No 448
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=59.22 E-value=38 Score=24.26 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=22.1
Q ss_pred CCEEEEEe--CCeEEEEECCCCeeEEEEee
Q 001391 35 LPFLLAGS--GSQVLLYDLEAGTLIRPFQV 62 (1088)
Q Consensus 35 ~~~laag~--d~~I~vwd~~tg~~~~~~~~ 62 (1088)
++.|.++. +++|.++|..+++.+..+..
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 55555544 59999999999999888886
No 449
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=57.95 E-value=2.9e+02 Score=31.70 Aligned_cols=164 Identities=11% Similarity=0.083 Sum_probs=88.7
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeecc-CcceE-EEE-EC-CCEEEEEeCC
Q 001391 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH-NARVW-DCC-LT-DSFIITAGED 327 (1088)
Q Consensus 252 ~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h-~~~I~-~v~-~~-~~~l~sg~~D 327 (1088)
+..-...|..+-..|||+.+..-+. ..+.++++.+.... .+++-. ...+. ...|+ .+. .+ +..++.+.+|
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~----~rkl~~-dspg~~~~~Vte~l~lL~Gg~SLLv~~~d 289 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQ----IRKLVD-DSPGDSRHQVTEQLYLLSGGFSLLVVHED 289 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccc----hhhhhh-cCCCchHHHHHHHHHHHhCceeEEEEcCC
Confidence 4444566777888999998876655 57889998875431 111100 00110 01111 111 12 5568889999
Q ss_pred CcEEEEcC---CCc-eeEEEcccC--CCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceE
Q 001391 328 CTCRVWGS---DGK-QLKMIKEHI--GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIF 401 (1088)
Q Consensus 328 g~i~vWd~---~~~-~~~~~~~h~--~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1088)
|.+.-|=. ++. .+...+..+ ..++..+.-..+.+-+++-...|++.++.-.....-
T Consensus 290 G~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l------------------ 351 (733)
T COG4590 290 GLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL------------------ 351 (733)
T ss_pred CceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce------------------
Confidence 99988754 222 122111111 112333333333445666677777777654221100
Q ss_pred EeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCC
Q 001391 402 SIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMD 451 (1088)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~ 451 (1088)
....-...+.-++++|.+..+..-+.|.+..+.+.+..
T Consensus 352 ------------L~~~~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~ 389 (733)
T COG4590 352 ------------LFERAYQAPQLVAMSPNQAYLLSEDQGKIRLAQLENRN 389 (733)
T ss_pred ------------ehhhhhcCcceeeeCcccchheeecCCceEEEEecCCC
Confidence 00001123567789998888888888998887776643
No 450
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=56.79 E-value=2.8e+02 Score=29.77 Aligned_cols=84 Identities=14% Similarity=0.062 Sum_probs=45.6
Q ss_pred CEEEEEEcCCCCEEEEEE---CCCcEEEEEcCCCcccCCCCceeeece-eeeccCcceEEEEEC-C-CEEEEEeCC-CcE
Q 001391 258 SIFRIEWSSCGSKLVSVS---DDRSARIWEVRAEYWKDSDSIEEVGSS-VLYGHNARVWDCCLT-D-SFIITAGED-CTC 330 (1088)
Q Consensus 258 ~V~~v~~sp~g~~l~s~s---~Dg~v~iWd~~~~~~~~~~~~~~i~~~-~~~~h~~~I~~v~~~-~-~~l~sg~~D-g~i 330 (1088)
.|..+.++|||.+++... .++.|.+=-+...... .......+. ........+.++.|. + .+++.+... +.+
T Consensus 113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g--~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~ 190 (253)
T PF10647_consen 113 RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG--VPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPV 190 (253)
T ss_pred ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC--CcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCce
Confidence 899999999999877655 3577777665433220 001111111 222335678999998 3 344443333 333
Q ss_pred EE-EcCCCceeEEE
Q 001391 331 RV-WGSDGKQLKMI 343 (1088)
Q Consensus 331 ~v-Wd~~~~~~~~~ 343 (1088)
.. ....|.....+
T Consensus 191 ~~~v~~dG~~~~~l 204 (253)
T PF10647_consen 191 VRLVSVDGGPSTPL 204 (253)
T ss_pred eEEEEccCCccccc
Confidence 33 33455544444
No 451
>PRK13684 Ycf48-like protein; Provisional
Probab=55.03 E-value=3.5e+02 Score=30.40 Aligned_cols=115 Identities=10% Similarity=-0.038 Sum_probs=63.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEE
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVW 333 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vW 333 (1088)
-...++++.+.++++.++.+ ..|.+++=..+.+.. -+.+. .....-...+.++.+. +..++.++.+|.+..=
T Consensus 213 ~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s-----W~~~~-~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S 285 (334)
T PRK13684 213 SSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES-----WSKPI-IPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVS 285 (334)
T ss_pred CcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc-----ccccc-CCccccccceeeEEEcCCCCEEEEcCCCeEEEe
Confidence 34678999999998876654 557664322222211 11111 0001112346777777 4456677778876642
Q ss_pred cCCCceeEEEcccCC--CCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 334 GSDGKQLKMIKEHIG--RGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 334 d~~~~~~~~~~~h~~--~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
.-.|+.-........ ...+.+.+..+++.++ .|..|.|.-++-
T Consensus 286 ~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 286 KDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVG 330 (334)
T ss_pred CCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEecC
Confidence 224454444332111 2477888876666544 566788877754
No 452
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=53.97 E-value=3.9e+02 Score=30.59 Aligned_cols=13 Identities=15% Similarity=0.161 Sum_probs=9.3
Q ss_pred cEEEEEcCCCceE
Q 001391 158 SIRVWDISNSSII 170 (1088)
Q Consensus 158 ~V~iWd~~~~~~~ 170 (1088)
.+.+||..+.+..
T Consensus 190 ~v~~YD~~t~~W~ 202 (376)
T PRK14131 190 EVLSYDPSTNQWK 202 (376)
T ss_pred eEEEEECCCCeee
Confidence 5788898776554
No 453
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=53.44 E-value=4.2e+02 Score=30.81 Aligned_cols=185 Identities=13% Similarity=0.206 Sum_probs=102.2
Q ss_pred EEecCCCc-eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCe-----eEEEEeeeCCcceEEEEeccccccc
Q 001391 8 EWRLDVGQ-YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT-----LIRPFQVFHGIRLHGISCNFINCTE 80 (1088)
Q Consensus 8 iWdl~~g~-~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~-----~~~~~~~~~~~~V~~i~~s~~~~~~ 80 (1088)
.|...-+. ..-+..|++...+-...+....|++|+ .|.|+||+...+. ++-+.+ -+.+|.++..-.. . .
T Consensus 9 wWst~~~~~e~~d~~~l~v~~~~~~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~--l~~PILqv~~G~F-~-s 84 (418)
T PF14727_consen 9 WWSTKCGENEEFDQGSLCVGNLDNSPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ--LKDPILQVECGKF-V-S 84 (418)
T ss_pred eeeccCCCCCcCcCceEEEEcccCCCCCccEEEEeccccEEEEEccCCCCCCCccEEEEEe--cCCcEEEEEeccc-c-C
Confidence 45554432 112334555542221122356888888 8999999986543 222222 2347888887532 1 1
Q ss_pred CCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccC-C-CCEEEEEEcCCc
Q 001391 81 GSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN-G-NRSLAIGCSDNS 158 (1088)
Q Consensus 81 ~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~-d-~~~lasgs~Dg~ 158 (1088)
+++. ..||+---+.+.||.+.... +. ...+....++++....- ......+..-|... . ...|.+=+-||.
T Consensus 85 ~~~~----~~LaVLhP~kl~vY~v~~~~--g~-~~~g~~~~L~~~yeh~l-~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~ 156 (418)
T PF14727_consen 85 GSED----LQLAVLHPRKLSVYSVSLVD--GT-VEHGNQYQLELIYEHSL-QRTAYNMCCGPFGGVKGRDFICVQSMDGS 156 (418)
T ss_pred CCCc----ceEEEecCCEEEEEEEEecC--CC-cccCcEEEEEEEEEEec-ccceeEEEEEECCCCCCceEEEEEecCce
Confidence 1232 78888889999999996332 11 00011122222221111 23344555544322 2 357888899999
Q ss_pred EEEEEcCCCceEEEecc--CCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEec
Q 001391 159 IRVWDISNSSIILEVHS--PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 159 V~iWd~~~~~~~~~~~~--~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
+.+++-+.-.....+.. -.+++.|+ +....+++++.+..+..|+..
T Consensus 157 L~~feqe~~~f~~~lp~~llPgPl~Y~-------~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 157 LSFFEQESFAFSRFLPDFLLPGPLCYC-------PRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred EEEEeCCcEEEEEEcCCCCCCcCeEEe-------ecCCEEEEecCceeEEEecHH
Confidence 99998765443333321 12344554 345678888888888888875
No 454
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=53.00 E-value=4e+02 Score=30.41 Aligned_cols=108 Identities=12% Similarity=0.096 Sum_probs=51.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeec----cCcceEEEEEC--CCEEEEEeC--
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG----HNARVWDCCLT--DSFIITAGE-- 326 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~----h~~~I~~v~~~--~~~l~sg~~-- 326 (1088)
.-....++++.+++ .+++ +.....++.+......... ..+.+-. .+.. +......++|. +.+.++-+.
T Consensus 70 ~l~~p~Gi~~~~~G-lyV~-~~~~i~~~~d~~gdg~ad~-~~~~l~~-~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~ 145 (367)
T TIGR02604 70 ELSMVTGLAVAVGG-VYVA-TPPDILFLRDKDGDDKADG-EREVLLS-GFGGQINNHHHSLNSLAWGPDGWLYFNHGNTL 145 (367)
T ss_pred CCCCccceeEecCC-EEEe-CCCeEEEEeCCCCCCCCCC-ccEEEEE-ccCCCCCcccccccCceECCCCCEEEecccCC
Confidence 34456889999988 4444 4444333445433211000 1122210 1111 12335567776 334343331
Q ss_pred -----------------CCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEe
Q 001391 327 -----------------DCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367 (1088)
Q Consensus 327 -----------------Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~ 367 (1088)
.|.|..++.++..+..+... .+..+.++|+++|+++++-.
T Consensus 146 ~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G-~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 146 ASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHG-FQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CceeccCCCccCcccccCceEEEEecCCCeEEEEecC-cCCCccceECCCCCEEEEcc
Confidence 13455555555444444322 22467889999888766543
No 455
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.49 E-value=1.8e+02 Score=38.01 Aligned_cols=152 Identities=16% Similarity=0.157 Sum_probs=84.9
Q ss_pred eCCCcEEEEcC-CCceeEEEcccCCCCeEEEEE-cC-------CCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccC
Q 001391 325 GEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLY-DS-------LSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFN 395 (1088)
Q Consensus 325 ~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~-~~-------dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~ 395 (1088)
+-|..+.+|+. ++.....+.+... .|..+.+ -| .=++++.-+.--.|.++-+.-... .+.. .-|
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~sh-tIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~---~~~~--~~f- 168 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSH-TILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEF---TGEL--SIF- 168 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhh-hheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccc---cCcc--ccc-
Confidence 45888999999 5566666665554 4655543 22 223444444444566665521000 0000 000
Q ss_pred CCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcce---eEE--------------e
Q 001391 396 GRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVN---WNK--------------I 458 (1088)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~---~~~--------------~ 458 (1088)
...+.+. ..+-.|+|+....+|+++.++.+|.+|.+......... +.+ +
T Consensus 169 --~~~~~i~------------~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~ 234 (1311)
T KOG1900|consen 169 --NTSFKIS------------VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSL 234 (1311)
T ss_pred --ccceeee------------cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhh
Confidence 0001221 22346899998889999999999998876432211100 000 0
Q ss_pred --eeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCC
Q 001391 459 --LQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDV 505 (1088)
Q Consensus 459 --~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~ 505 (1088)
..+.+..+|..+.+..+. +++.+-++.|.|.+|++....
T Consensus 235 ~~~~~~~~dpI~qi~ID~SR--------~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 235 LSVPGSSKDPIRQITIDNSR--------NILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred hcCCCCCCCcceeeEecccc--------ceeeeeccCceEEEEEccCCC
Confidence 112334566666665543 788888999999999997643
No 456
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.59 E-value=3.7e+02 Score=29.31 Aligned_cols=180 Identities=14% Similarity=0.100 Sum_probs=96.8
Q ss_pred eeccCcceEEEEECC--CEEEEEeCCCcEEEE-cCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCC
Q 001391 304 LYGHNARVWDCCLTD--SFIITAGEDCTCRVW-GSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (1088)
Q Consensus 304 ~~~h~~~I~~v~~~~--~~l~sg~~Dg~i~vW-d~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~ 380 (1088)
..|-...+.++.|++ +.|++......-.|| +.+|+.+.++.-..-.---.|.+..+++++++--+++.+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 455556699999983 445554444444444 44899988864322112457888889999888888999999888432
Q ss_pred CCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCC-eEEEEecCCeEEEEEeccCCcceeEEee
Q 001391 381 LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIATNHGYLYHTKLCDMDSVNWNKIL 459 (1088)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~-~ll~~t~~g~i~~~~~~~~~~~~~~~~~ 459 (1088)
..+.... ...-.++.....+.....++|.|.+ .++++-...-+..+............+.
T Consensus 161 -----------------t~~~~~~--~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~ 221 (316)
T COG3204 161 -----------------TTVISAK--VQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHAS 221 (316)
T ss_pred -----------------ccEEecc--ceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccc
Confidence 1111111 0011122222334567889999966 5555544443332222221111111111
Q ss_pred eecC-CcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCC
Q 001391 460 QVSE-GMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGD 504 (1088)
Q Consensus 460 ~~~~-~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~ 504 (1088)
..+. ...+...+++. ..+....+.+++.+.+++.+.-.+....
T Consensus 222 ~~~~~~~~~f~~DvSg--l~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 222 LDPTADRDLFVLDVSG--LEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cCcccccceEeecccc--ceecCCCCcEEEEecCCceEEEEecCCC
Confidence 1111 12233333321 2233346688899999988888777643
No 457
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.26 E-value=1.3e+02 Score=39.22 Aligned_cols=66 Identities=9% Similarity=-0.078 Sum_probs=39.7
Q ss_pred cceEEEEEC-CCEEEEEeCCCcEEEEcCCCcee-EEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCC
Q 001391 309 ARVWDCCLT-DSFIITAGEDCTCRVWGSDGKQL-KMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (1088)
Q Consensus 309 ~~I~~v~~~-~~~l~sg~~Dg~i~vWd~~~~~~-~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~ 380 (1088)
..+.+..+. ..-++.+..-+.+-+|+...... ..+..... ..++++..++++..||.+..||.+..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~h~Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 199 YESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQ------LESRDGSHFVSYHTDGSYAFWDVSSG 266 (993)
T ss_pred cccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccc------cCccCCceEEEEEecCCEEeeecCCC
Confidence 334444443 44455566666677776633222 22221111 11788999999999999999999653
No 458
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=49.19 E-value=3.4e+02 Score=31.93 Aligned_cols=66 Identities=9% Similarity=0.007 Sum_probs=39.5
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCC
Q 001391 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDS 319 (1088)
Q Consensus 251 ~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~ 319 (1088)
.+...-...+.|+|.|||+.|++--..|.|++++..+.... ....+.......-......++++++
T Consensus 24 ~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~---~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 24 VLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVK---VVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred EEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCcee---eeecCCceeccCCCCceeeEEECCC
Confidence 34444567889999999988877765799999876543210 0000110011112566788998854
No 459
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=48.80 E-value=60 Score=39.49 Aligned_cols=85 Identities=13% Similarity=0.088 Sum_probs=42.3
Q ss_pred eCCCEEEEEcCCCcEEEEeCCccccccc--------ccccccccCcceeec--cc-ccccceeEEEEEecc-CCceEEEE
Q 001391 590 FEDEVLFCGDLRGNLVLFPLLRDLLNDK--------SVALHVEVSPLNYFK--GA-HGISTVSTLSVAKLR-SNQTEIRS 657 (1088)
Q Consensus 590 pdg~~LatGs~dg~I~Iw~~~~~~~~~~--------~~~~~~~l~~~~~~~--g~-hg~~~Vtsv~~~~~~-~~~~~l~t 657 (1088)
++...|+.+..||.+............. .....+.+..+.... +. .....+.++++.... .+..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4778899999999999988775221000 000011111111000 00 011233444443211 24578999
Q ss_pred ecCCCeEEEEEeecCCc
Q 001391 658 TGGDGCICYLEYDKDRE 674 (1088)
Q Consensus 658 ~g~Dg~i~iw~~~~~~~ 674 (1088)
.++|+++|+|++.....
T Consensus 236 l~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EETTSEEEEEETTTTCE
T ss_pred EeCCCeEEEEECCCCeE
Confidence 99999999999988644
No 460
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=48.45 E-value=2.2e+02 Score=33.07 Aligned_cols=126 Identities=17% Similarity=0.118 Sum_probs=71.7
Q ss_pred cceeeeccCCCCcEEEEEEeccc-----CCCCEEEEEEcCCcEEEEEcC-CCceEEEec--cCCceeEEEEeeecCCCCC
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVC-----NGNRSLAIGCSDNSIRVWDIS-NSSIILEVH--SPERCLLYSMKLWGDNLEA 193 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~-----~d~~~lasgs~Dg~V~iWd~~-~~~~~~~~~--~~~~~~~~s~~~~~~s~~~ 193 (1088)
++.+-...-|.+- -+.|.|.. .+.+.| +|-.+..|.-.|.+ .+..+...+ .-....-++... ....
T Consensus 500 GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~---tTes 573 (776)
T COG5167 500 GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGM---TTES 573 (776)
T ss_pred ceeeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccCCceeeeeehhccccccccccc---cccC
Confidence 4555555555553 56666611 012233 46566666666654 232222221 111111122111 1244
Q ss_pred cEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEE
Q 001391 194 LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS 273 (1088)
Q Consensus 194 ~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s 273 (1088)
-+||+++.-|-|++||-- ..+.-..+.+-...|..|..+.+|++++.
T Consensus 574 GyIa~as~kGDirLyDRi---------------------------------g~rAKtalP~lG~aIk~idvta~Gk~ila 620 (776)
T COG5167 574 GYIAAASRKGDIRLYDRI---------------------------------GKRAKTALPGLGDAIKHIDVTANGKHILA 620 (776)
T ss_pred ceEEEecCCCceeeehhh---------------------------------cchhhhcCcccccceeeeEeecCCcEEEE
Confidence 589999999999999965 22223345667788999999999998877
Q ss_pred EECCCcEEEEEcCC
Q 001391 274 VSDDRSARIWEVRA 287 (1088)
Q Consensus 274 ~s~Dg~v~iWd~~~ 287 (1088)
.+.. .+.+-|+.-
T Consensus 621 TCk~-yllL~d~~i 633 (776)
T COG5167 621 TCKN-YLLLTDVPI 633 (776)
T ss_pred eecc-eEEEEeccc
Confidence 6654 677777654
No 461
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=48.15 E-value=2.3e+02 Score=28.37 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=25.5
Q ss_pred CceEEEEeccCC-------eEEEEecCCeEEEEEeccCCcceeEEee
Q 001391 420 EYVRCLHLTSED-------TLYIATNHGYLYHTKLCDMDSVNWNKIL 459 (1088)
Q Consensus 420 ~~V~~l~~s~~~-------~ll~~t~~g~i~~~~~~~~~~~~~~~~~ 459 (1088)
..++.++|+|.| .+.+.|++|.+..+.-......+|..+.
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~~~~W~~v~ 132 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNPQGEWNRVA 132 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCccccEeeee
Confidence 379999999955 3556688888875432221155575553
No 462
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.13 E-value=3.6e+02 Score=31.62 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=29.8
Q ss_pred cEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEe
Q 001391 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1088)
Q Consensus 134 ~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~ 173 (1088)
.+..++|+|.+--...|..-+.|++||+||+.....+...
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhcc
Confidence 4677899993322467778889999999999877665443
No 463
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=47.65 E-value=4.1e+02 Score=29.03 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=42.6
Q ss_pred CceEEecCCCc-------eeeeeEEEEEeccCCCCCCCCEEEEEe-------CCeEEEEECCCCeeEEEEeeeC----Cc
Q 001391 5 DLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-------GSQVLLYDLEAGTLIRPFQVFH----GI 66 (1088)
Q Consensus 5 ~i~iWdl~~g~-------~~~~V~~v~fs~~pd~~~~~~~laag~-------d~~I~vwd~~tg~~~~~~~~~~----~~ 66 (1088)
.|++||..+.+ ..|.|++|.|. .+ .+++++|. ...+..||..+..-. .+.... ..
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~--~~----~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipg 89 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWA--SN----NQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPG 89 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEe--cC----CEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCC
Confidence 48899988776 56899999998 55 67888875 147899998876432 222211 12
Q ss_pred ceEEEEec
Q 001391 67 RLHGISCN 74 (1088)
Q Consensus 67 ~V~~i~~s 74 (1088)
+|..+.+.
T Consensus 90 pv~a~~~~ 97 (281)
T PF12768_consen 90 PVTALTFI 97 (281)
T ss_pred cEEEEEee
Confidence 57777664
No 464
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=46.82 E-value=43 Score=22.06 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=21.3
Q ss_pred ceEEEEEeeeCCCEEEEEcCCCcEEEEe
Q 001391 581 ARIMCLDASFEDEVLFCGDLRGNLVLFP 608 (1088)
Q Consensus 581 ~~It~l~~spdg~~LatGs~dg~I~Iw~ 608 (1088)
+.|.+++.+ ..+++.+.+.+.++||.
T Consensus 2 E~i~aia~g--~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAG--DSWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEcc--CCEEEEEeCCCeEEecC
Confidence 457888877 56999999999999984
No 465
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=43.45 E-value=4.4e+02 Score=28.21 Aligned_cols=113 Identities=12% Similarity=0.036 Sum_probs=62.9
Q ss_pred cEEEEEEecccCCCCEEEEEEcCCcEEEEE-cCCCce-EEEeccCCce-eEEEEeeecCCCCCcEEEEEe---cCCeEEE
Q 001391 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWD-ISNSSI-ILEVHSPERC-LLYSMKLWGDNLEALRIASGT---IYNEIIV 207 (1088)
Q Consensus 134 ~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd-~~~~~~-~~~~~~~~~~-~~~s~~~~~~s~~~~~l~sg~---~dg~I~v 207 (1088)
.+..-.|++ ++...+....+...+++. ..++.. ...+..+... .+.++++ ++||..+|.-. .++.|.+
T Consensus 67 ~l~~PS~d~---~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~v---SpDG~RvA~v~~~~~~~~v~v 140 (253)
T PF10647_consen 67 SLTRPSWDP---DGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRV---SPDGTRVAVVVEDGGGGRVYV 140 (253)
T ss_pred ccccccccC---CCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEE---CCCCcEEEEEEecCCCCeEEE
Confidence 566667777 766665555566666663 333322 2222222221 4566666 78998877644 3577777
Q ss_pred EEeccCccc-cCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC
Q 001391 208 WKVDWEHVA-PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277 (1088)
Q Consensus 208 wd~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D 277 (1088)
--+...... +. ....++.........+..++|.+++.+++.+...
T Consensus 141 a~V~r~~~g~~~-------------------------~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 141 AGVVRDGDGVPR-------------------------RLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred EEEEeCCCCCcc-------------------------eeccceEecccccCcceeeeecCCCEEEEEeCCC
Confidence 766511110 00 0112223333445789999999999877665543
No 466
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=42.04 E-value=5.8e+02 Score=29.17 Aligned_cols=201 Identities=15% Similarity=0.114 Sum_probs=108.8
Q ss_pred eEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecc-cCCCCE--EEEEEc-C---CcEEE
Q 001391 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKV-CNGNRS--LAIGCS-D---NSIRV 161 (1088)
Q Consensus 89 ~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~-~~d~~~--lasgs~-D---g~V~i 161 (1088)
.++.+-.++-+.+||+. .+.++.+.. ++++-+.+-.. .-+++. |+.++. + ++|++
T Consensus 70 lIigTdK~~GL~VYdL~----------------Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~ 131 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLD----------------GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRL 131 (381)
T ss_dssp EEEEEETTTEEEEEETT----------------S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEE
T ss_pred eEEEEeCCCCEEEEcCC----------------CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEE
Confidence 55555568899999998 344555432 33444443210 003332 444443 2 57999
Q ss_pred EEcCCC-ceEEEeccC------CceeEEEEeeecCCCCC-cEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCC
Q 001391 162 WDISNS-SIILEVHSP------ERCLLYSMKLWGDNLEA-LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (1088)
Q Consensus 162 Wd~~~~-~~~~~~~~~------~~~~~~s~~~~~~s~~~-~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~ 233 (1088)
|.+... ..+..+..+ ....+|.+++.....++ .+++....+|.+..|.+......
T Consensus 132 f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g----------------- 194 (381)
T PF02333_consen 132 FRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDG----------------- 194 (381)
T ss_dssp EEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTS-----------------
T ss_pred EEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCC-----------------
Confidence 988632 233333221 11235777776544444 46677888999999888611100
Q ss_pred CceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEE
Q 001391 234 FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD 313 (1088)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~ 313 (1088)
.-..+.+++|.. ...+-++.......+|..+-++.-|+-|+.+.... ...+.+....-.+....|-.
T Consensus 195 ---------~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~---~~~~~v~~~~g~~l~aDvEG 261 (381)
T PF02333_consen 195 ---------KVSATLVREFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGG---NDRTLVASADGDGLVADVEG 261 (381)
T ss_dssp ---------SEEEEEEEEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC----S--EEEEEBSSSSB-S-EEE
T ss_pred ---------cEeeEEEEEecC-CCcceEEEEecccCCEEEecCccEEEEEecCCCCC---CcceeeecccccccccCccc
Confidence 013456777764 34788999999889999999998777777654321 01122220011123455666
Q ss_pred EEEC------CCEEEEEeCCCcEEEEcCCC
Q 001391 314 CCLT------DSFIITAGEDCTCRVWGSDG 337 (1088)
Q Consensus 314 v~~~------~~~l~sg~~Dg~i~vWd~~~ 337 (1088)
+++- +-+|+|.-.+++..||+..+
T Consensus 262 laly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 262 LALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred eEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 6653 23556666778999999843
No 467
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=41.73 E-value=4.5e+02 Score=27.83 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=30.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCccc
Q 001391 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLE 386 (1088)
Q Consensus 350 ~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~ 386 (1088)
.||--.-+|+...+++.-..+-+++||+.++.++.++
T Consensus 57 AIwVh~t~P~kS~vItt~Kk~Gl~VYDLsGkqLqs~~ 93 (364)
T COG4247 57 AIWVHATNPDKSLVITTVKKAGLRVYDLSGKQLQSVN 93 (364)
T ss_pred ceEeccCCcCcceEEEeeccCCeEEEecCCCeeeecC
Confidence 5776667888889999999999999999988777654
No 468
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=41.72 E-value=78 Score=38.51 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=25.0
Q ss_pred CCEEEEEEcC----CCCEEEEEECCCcEEEEEcCCCcc
Q 001391 257 GSIFRIEWSS----CGSKLVSVSDDRSARIWEVRAEYW 290 (1088)
Q Consensus 257 ~~V~~v~~sp----~g~~l~s~s~Dg~v~iWd~~~~~~ 290 (1088)
+.+..++.++ +..++++.+.|+++|+||+.++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 3455566665 678999999999999999999643
No 469
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=41.39 E-value=1.1e+03 Score=32.25 Aligned_cols=94 Identities=19% Similarity=0.247 Sum_probs=54.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEe
Q 001391 348 GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHL 427 (1088)
Q Consensus 348 ~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~ 427 (1088)
.+.|.++++-.+ +.+++....|.+..+.-.+. ...+. ..+-++.|..++.
T Consensus 702 ~~~i~a~Avv~~-~~fvald~qg~lt~h~k~g~-p~~l~----------------------------~~gl~G~ik~l~l 751 (1774)
T PF11725_consen 702 DRVITAFAVVND-NKFVALDDQGDLTAHQKPGR-PVPLS----------------------------RPGLSGEIKDLAL 751 (1774)
T ss_pred cCcceeEEEEcC-CceEEeccCCccccccCCCC-CccCC----------------------------CCCCCcchhheee
Confidence 345777777654 34566677777777763221 11110 0112356889999
Q ss_pred ccCCeEEEEecCCeEEEEE--eccCC------cceeEEeeeecCCcceEEEec
Q 001391 428 TSEDTLYIATNHGYLYHTK--LCDMD------SVNWNKILQVSEGMPIICMDL 472 (1088)
Q Consensus 428 s~~~~ll~~t~~g~i~~~~--~~~~~------~~~~~~~~~~~~~~~i~~l~~ 472 (1088)
..+..+++.+.+|.+|... -|... ..+|.++.- +.+.++.++..
T Consensus 752 D~~~nL~Alt~~G~Lf~~~k~~WQ~~~~~~~~~~~W~~v~l-P~~~~v~~l~~ 803 (1774)
T PF11725_consen 752 DEKQNLYALTSTGELFRLPKEAWQGNAEGDQMAAKWQKVAL-PDEQPVKSLRT 803 (1774)
T ss_pred ccccceeEecCCCceeecCHHHhhCcccCCccccCceeccC-CCCCchhhhhc
Confidence 8888999999999998652 12211 234766633 34555555544
No 470
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=41.09 E-value=5.5e+02 Score=28.67 Aligned_cols=112 Identities=13% Similarity=0.128 Sum_probs=63.9
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCc------EEEEEcCCCcccCCCCceeeeceeeeccCc--------ceEEEEEC--CC
Q 001391 256 EGSIFRIEWSSCGSKLVSVSDDRS------ARIWEVRAEYWKDSDSIEEVGSSVLYGHNA--------RVWDCCLT--DS 319 (1088)
Q Consensus 256 ~~~V~~v~~sp~g~~l~s~s~Dg~------v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~--------~I~~v~~~--~~ 319 (1088)
-+.+.+|.+.|++..+++.|+++. +...++..... ............+....+ ..-++++. +.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 366788999987778888888888 65555554110 000011111111111111 22345553 55
Q ss_pred EEEEEeCC------CcEEEEcCCCceeEEEc--------------ccCCCCeEEEEEcCCCCEEEEEeC
Q 001391 320 FIITAGED------CTCRVWGSDGKQLKMIK--------------EHIGRGIWRCLYDSLSSLLVTAGF 368 (1088)
Q Consensus 320 ~l~sg~~D------g~i~vWd~~~~~~~~~~--------------~h~~~~V~~l~~~~dg~~l~tg~~ 368 (1088)
++++.-.+ ..|+.++.+|+.+..+. ....++.-+++++|+|+.|+++-.
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 66655555 67888887776654431 112346899999999996666543
No 471
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.02 E-value=3.4e+02 Score=31.78 Aligned_cols=32 Identities=19% Similarity=0.440 Sum_probs=26.4
Q ss_pred CEEEEEEcCCC---CEEEEEECCCcEEEEEcCCCc
Q 001391 258 SIFRIEWSSCG---SKLVSVSDDRSARIWEVRAEY 289 (1088)
Q Consensus 258 ~V~~v~~sp~g---~~l~s~s~Dg~v~iWd~~~~~ 289 (1088)
.+..++|+|+. ..|..-+.|.++|+||+....
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcc
Confidence 46678999976 678888889999999998853
No 472
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=40.43 E-value=8.8e+02 Score=30.80 Aligned_cols=186 Identities=13% Similarity=0.093 Sum_probs=0.0
Q ss_pred CCEEEEEEcCCcEEEEEcCCCceEEEeccCCcee-------EEEEeeecC-------------CCCCcEEEEEecCCeEE
Q 001391 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCL-------LYSMKLWGD-------------NLEALRIASGTIYNEII 206 (1088)
Q Consensus 147 ~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~-------~~s~~~~~~-------------s~~~~~l~sg~~dg~I~ 206 (1088)
+..|+.++.++.|.-.|..+|+.+-++....... +-.+.++.. ...+..|+.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Q ss_pred EEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCE-------------EEEEEcC--CCCEE
Q 001391 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSI-------------FRIEWSS--CGSKL 271 (1088)
Q Consensus 207 vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V-------------~~v~~sp--~g~~l 271 (1088)
-.|.+ +++.+..+ +..+.| ..+.-.| .+..+
T Consensus 274 ALDA~---------------------------------TGk~~W~f-g~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~V 319 (764)
T TIGR03074 274 ALDAD---------------------------------TGKLCEDF-GNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTV 319 (764)
T ss_pred EEECC---------------------------------CCCEEEEe-cCCCceeeecccCcCCCcccccccCCEEECCEE
Q ss_pred EEEEC----------CCcEEEEEcCCCcccCCCCceeeeceeeeccCc----------------------ceEEEEECCC
Q 001391 272 VSVSD----------DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA----------------------RVWDCCLTDS 319 (1088)
Q Consensus 272 ~s~s~----------Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~----------------------~I~~v~~~~~ 319 (1088)
+.++. +|.|+-+|..+++. .-.-+.. ...++.-..+
T Consensus 320 IvG~~v~d~~~~~~~~G~I~A~Da~TGkl------------~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~g 387 (764)
T TIGR03074 320 VIGGRVADNYSTDEPSGVIRAFDVNTGAL------------VWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLG 387 (764)
T ss_pred EEEecccccccccCCCcEEEEEECCCCcE------------eeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCC
Q ss_pred EEEEEe------------------CCCcEEEEcC-CCceeEEEcccCCCCeEE---------EEEcC-CCC---EEEEEe
Q 001391 320 FIITAG------------------EDCTCRVWGS-DGKQLKMIKEHIGRGIWR---------CLYDS-LSS---LLVTAG 367 (1088)
Q Consensus 320 ~l~sg~------------------~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~---------l~~~~-dg~---~l~tg~ 367 (1088)
+++.+. ..++|.-.|. +|+....++....+ +|. +.+.. +|+ .++.++
T Consensus 388 lvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD-~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~ 466 (764)
T TIGR03074 388 LVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHHD-LWDMDVPAQPSLVDLPDADGTTVPALVAPT 466 (764)
T ss_pred eEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCCc-cccccccCCceEEeeecCCCcEeeEEEEEC
Q ss_pred CCCCEEEEEcCC
Q 001391 368 FDSAIKVHQFQA 379 (1088)
Q Consensus 368 ~Dg~I~iwd~~~ 379 (1088)
.+|.+.+.|.++
T Consensus 467 K~G~~~vlDr~t 478 (764)
T TIGR03074 467 KQGQIYVLDRRT 478 (764)
T ss_pred CCCEEEEEECCC
No 473
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=40.33 E-value=5.3e+02 Score=28.19 Aligned_cols=100 Identities=14% Similarity=0.115 Sum_probs=56.1
Q ss_pred CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC-------CCEEEEEEeccCCCCCCCCCC
Q 001391 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-------EKRVKLFELNFELSPNSQYQP 116 (1088)
Q Consensus 44 ~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-------d~~v~iw~l~~~~~~~~~~~~ 116 (1088)
..|++||..+.+-...-..-.+ .|..+.|. .+. .+++++. ...+..||+....
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G-~V~~l~~~-------~~~----~Llv~G~ft~~~~~~~~la~yd~~~~~-------- 75 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISG-TVTDLQWA-------SNN----QLLVGGNFTLNGTNSSNLATYDFKNQT-------- 75 (281)
T ss_pred CEEEEEECCCCEeecCCCCceE-EEEEEEEe-------cCC----EEEEEEeeEECCCCceeEEEEecCCCe--------
Confidence 6899999988766544444445 69999996 332 5555543 2467888887532
Q ss_pred ccccccceeee-c-cCCCCcEEEEEEecccCCCC-EEEEEE-c--CCcEEEEEcCCCceE
Q 001391 117 ETCVNLSLVQS-L-PRLSHWVFDVCFLKVCNGNR-SLAIGC-S--DNSIRVWDISNSSII 170 (1088)
Q Consensus 117 ~~~~~~~~~~~-l-~~h~~~I~~v~f~p~~~d~~-~lasgs-~--Dg~V~iWd~~~~~~~ 170 (1088)
+..+.. . ..-.+.|..+.+... |+. ..+.|. . +..|..||-.....+
T Consensus 76 -----w~~~~~~~s~~ipgpv~a~~~~~~--d~~~~~~aG~~~~g~~~l~~~dGs~W~~i 128 (281)
T PF12768_consen 76 -----WSSLGGGSSNSIPGPVTALTFISN--DGSNFWVAGRSANGSTFLMKYDGSSWSSI 128 (281)
T ss_pred -----eeecCCcccccCCCcEEEEEeecc--CCceEEEeceecCCCceEEEEcCCceEec
Confidence 111111 0 122467888887541 333 333333 2 334666765544433
No 474
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=39.91 E-value=1e+02 Score=21.81 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=19.8
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEEC-C--CcEEEE
Q 001391 253 VGHEGSIFRIEWSSCGSKLVSVSD-D--RSARIW 283 (1088)
Q Consensus 253 ~gh~~~V~~v~~sp~g~~l~s~s~-D--g~v~iW 283 (1088)
....+.-....|+|||+.|+-++. + |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 345566788899999998866543 4 555554
No 475
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=39.44 E-value=4.6e+02 Score=30.51 Aligned_cols=28 Identities=29% Similarity=0.284 Sum_probs=24.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 351 IWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 351 V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
|.+++..+..+.|++...+|.|.+|++.
T Consensus 192 I~~v~~d~~r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 192 IVQVAVDPSRRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred eeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence 9999999988999999999999999995
No 476
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=39.22 E-value=6.4e+02 Score=28.86 Aligned_cols=93 Identities=18% Similarity=0.316 Sum_probs=58.7
Q ss_pred eEEEEECCCCeeEEEEeeeC-CcceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCcccccc
Q 001391 45 QVLLYDLEAGTLIRPFQVFH-GIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNL 122 (1088)
Q Consensus 45 ~I~vwd~~tg~~~~~~~~~~-~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~ 122 (1088)
.|.|.| +.+..+.++++.. +.+|.++.|- .|- ..++++. -.-+.+.|+..+.. .
T Consensus 407 ~vYilD-e~lnvvGkltGl~~gERIYAvRf~-------gdv----~yiVTfrqtDPlfviDlsNPen------------P 462 (603)
T COG4880 407 AVYILD-ENLNVVGKLTGLAPGERIYAVRFV-------GDV----LYIVTFRQTDPLFVIDLSNPEN------------P 462 (603)
T ss_pred eeEEEc-CCCcEEEEEeccCCCceEEEEEEe-------Cce----EEEEEEeccCceEEEEcCCCCC------------C
Confidence 466666 4567888888753 6789999998 453 5666665 45677888886541 2
Q ss_pred ceeeec--cCCCCcEEEEEEecccCCCCEEEEEEcCCcEE--EEEcCCC
Q 001391 123 SLVQSL--PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIR--VWDISNS 167 (1088)
Q Consensus 123 ~~~~~l--~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~--iWd~~~~ 167 (1088)
+.+..+ +|.+. -++|.+ .+.+|-+|-.+|.++ ++|+...
T Consensus 463 kvlGeLKIPGfS~-----YLHpig-en~~lGvG~~~g~vKiSLFdiSdl 505 (603)
T COG4880 463 KVLGELKIPGFSE-----YLHPIG-ENRLLGVGAYQGGVKISLFDISDL 505 (603)
T ss_pred ceeEEEecCCchh-----hccccC-CCcEEEeecccCCceEEEEeccCC
Confidence 333333 34332 234522 556788887777654 6887654
No 477
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=37.75 E-value=5.9e+02 Score=28.02 Aligned_cols=117 Identities=12% Similarity=0.106 Sum_probs=69.2
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeec-----cCcceEEEEEC--------------CC
Q 001391 259 IFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG-----HNARVWDCCLT--------------DS 319 (1088)
Q Consensus 259 V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~-----h~~~I~~v~~~--------------~~ 319 (1088)
-+.|+++|.+.+-++....+...+||........ ..+.+. ..... .....+.+.|+ ..
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g--~~~~L~-vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPL--VQDPLV-VVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccC--CccceE-EEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 4789999999999999999999999997321100 011111 12221 12345555554 13
Q ss_pred EEEEEeCCCcEEEEcCC--Cc----eeEEEcc-cCCCCeE-EEEEcC--CCCEEEEEe-CCCCEEEEEcCC
Q 001391 320 FIITAGEDCTCRVWGSD--GK----QLKMIKE-HIGRGIW-RCLYDS--LSSLLVTAG-FDSAIKVHQFQA 379 (1088)
Q Consensus 320 ~l~sg~~Dg~i~vWd~~--~~----~~~~~~~-h~~~~V~-~l~~~~--dg~~l~tg~-~Dg~I~iwd~~~ 379 (1088)
.++.+++||+|.-|... .. ....+.. ..+ .|+ .+++.. .+.+|..+. ..++|.++|-.-
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~g-avYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f 171 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQG-NVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF 171 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCc-ceeeeeEEeecCCCceEEEeccCCCceEEecCcc
Confidence 57889999999999961 11 1222321 123 343 455543 345555544 578999998644
No 478
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=37.38 E-value=7.5e+02 Score=29.13 Aligned_cols=53 Identities=15% Similarity=0.123 Sum_probs=35.5
Q ss_pred eeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCee--EEEEe----eeCCcceEEEEecccc
Q 001391 19 EISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTL--IRPFQ----VFHGIRLHGISCNFIN 77 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~--~~~~~----~~~~~~V~~i~~s~~~ 77 (1088)
.-.+|+|. || +++|++-- .|.|++++..++.. +..+. ........+|+++|++
T Consensus 31 ~Pw~mafl--PD----G~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWG--PD----NQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEc--CC----CeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 35588999 99 88888876 49999998765432 22121 1112368999999764
No 479
>PLN02193 nitrile-specifier protein
Probab=36.52 E-value=7.9e+02 Score=29.12 Aligned_cols=22 Identities=0% Similarity=0.021 Sum_probs=14.0
Q ss_pred CCCeEEEEECCC----CeEEEEecCC
Q 001391 533 LGHRFIFTADPK----GRLKLWQLCD 554 (1088)
Q Consensus 533 ~dg~~L~s~~~d----g~i~vwd~~~ 554 (1088)
.++++++.++.+ ..+.+||+..
T Consensus 327 ~~gkiyviGG~~g~~~~dv~~yD~~t 352 (470)
T PLN02193 327 VQGKVWVVYGFNGCEVDDVHYYDPVQ 352 (470)
T ss_pred ECCcEEEEECCCCCccCceEEEECCC
Confidence 356676666654 3577788764
No 480
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=36.39 E-value=6e+02 Score=27.71 Aligned_cols=262 Identities=9% Similarity=0.038 Sum_probs=130.5
Q ss_pred CCEEEEEe-CCeEEEEECCCCe---eEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCC
Q 001391 35 LPFLLAGS-GSQVLLYDLEAGT---LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELS 109 (1088)
Q Consensus 35 ~~~laag~-d~~I~vwd~~tg~---~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~ 109 (1088)
+.++..+. +.-|+|.|+++.. ++..+.. .+ --.++..+. ..+-++. +.-+-+.|+..+.
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~g-yaygv~vsG-------------n~aYVadlddgfLivdvsdps- 159 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-DG-YAYGVYVSG-------------NYAYVADLDDGFLIVDVSDPS- 159 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccC-Cc-eEEEEEecC-------------CEEEEeeccCcEEEEECCCCC-
Confidence 34555555 3569999987653 3333432 12 245666662 2333333 6667788888654
Q ss_pred CCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce---EEEeccCCceeEEEEee
Q 001391 110 PNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI---ILEVHSPERCLLYSMKL 186 (1088)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~---~~~~~~~~~~~~~s~~~ 186 (1088)
..++...+......-+.++++ |++-..+..|+-+.+-|+..... +.... .....+++..
T Consensus 160 -----------sP~lagrya~~~~d~~~v~IS-----Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n--~g~g~~sv~v 221 (370)
T COG5276 160 -----------SPQLAGRYALPGGDTHDVAIS-----GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN--TGPGTYSVSV 221 (370)
T ss_pred -----------CceeeeeeccCCCCceeEEEe-----cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe--cCCceEEEEe
Confidence 234555565555556788884 56666777899999999976532 22221 1123455443
Q ss_pred ecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE--eCCCCCEEEEEE
Q 001391 187 WGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL--VGHEGSIFRIEW 264 (1088)
Q Consensus 187 ~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~gh~~~V~~v~~ 264 (1088)
+++..+++.. +--+.+-|.. .......+ ....+.+.--.+
T Consensus 222 ---sdnr~y~vvy--~egvlivd~s---------------------------------~~ssp~~~gsyet~~p~~~s~v 263 (370)
T COG5276 222 ---SDNRAYLVVY--DEGVLIVDVS---------------------------------GPSSPTVFGSYETSNPVSISTV 263 (370)
T ss_pred ---cCCeeEEEEc--ccceEEEecC---------------------------------CCCCceEeeccccCCcccccce
Confidence 3333333332 3334455554 11111111 111111111122
Q ss_pred cCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcCCC-ceeEEE
Q 001391 265 SSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDG-KQLKMI 343 (1088)
Q Consensus 265 sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~~~-~~~~~~ 343 (1088)
.-.+++......+.-+.+-|+++... ..... .+.-....-..+...+.++..+..+ +..+-+... +.....
T Consensus 264 ~Vs~~~~Yvadga~gl~~idisnp~s-----pfl~s--s~~t~g~~a~gi~ay~~y~yiadkn-~g~vV~~s~~s~m~~~ 335 (370)
T COG5276 264 PVSGEYAYVADGAKGLPIIDISNPPS-----PFLSS--SLDTAGYQAAGIRAYGNYNYIADKN-TGAVVDASPPSMMDKR 335 (370)
T ss_pred ecccceeeeeccccCceeEeccCCCC-----Cchhc--cccCCCccccceEEecCeeEeccCC-ceEEEeCCChhhcccc
Confidence 33455555666666667777766432 11111 1111111233445556666666655 445555521 111111
Q ss_pred cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 344 KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 344 ~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
.+... .+.+.+.+-+.+.+.+...++-+.+|+.
T Consensus 336 ~g~~t-i~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 336 PGRPT-IGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred cCcce-EeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 11111 2344444445557888888898999875
No 481
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=35.82 E-value=6.4e+02 Score=27.84 Aligned_cols=74 Identities=12% Similarity=0.046 Sum_probs=49.8
Q ss_pred cEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEE--eeecCCCCCcEEEEEecCCeEEEEEec
Q 001391 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSM--KLWGDNLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 134 ~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~--~~~~~s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
.|++|...+ +|.+|+|.-.-.+|.+.|-.+++.+-.+.++... -+.+ .-+....+-..+-.+..++.|.++|=.
T Consensus 145 HiNsV~~~~---~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~-df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 145 HINSVDKDD---DGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNS-DFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred EeeeeeecC---CccEEEEecccCEEEEEECCCCcEEEEeCCCCCC-cccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 478888777 9999999988889999999999999888766221 1110 001111233344445678899999863
No 482
>PLN02153 epithiospecifier protein
Probab=35.68 E-value=6.7e+02 Score=28.08 Aligned_cols=24 Identities=4% Similarity=-0.112 Sum_probs=16.1
Q ss_pred eeCCCEEEEEcCC--------------CcEEEEeCCcc
Q 001391 589 SFEDEVLFCGDLR--------------GNLVLFPLLRD 612 (1088)
Q Consensus 589 spdg~~LatGs~d--------------g~I~Iw~~~~~ 612 (1088)
..++++++.|... ..++.||..+.
T Consensus 249 ~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~ 286 (341)
T PLN02153 249 VVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL 286 (341)
T ss_pred EECCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence 3467888888852 25778887654
No 483
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]
Probab=35.57 E-value=1e+03 Score=30.07 Aligned_cols=244 Identities=12% Similarity=0.095 Sum_probs=119.2
Q ss_pred eEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc----------CC-
Q 001391 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS----------DN- 157 (1088)
Q Consensus 89 ~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~----------Dg- 157 (1088)
.++.+..-..++++.+..+...... .-+....+-| ..+..++++| .+++.++|+. ||
T Consensus 874 gy~~Vd~~~~vr~~~~~~dn~y~gn--------K~p~k~~~~~-Ktlqklvyh~---~~~~~~Vgsc~~~~f~~~gEdgE 941 (1319)
T COG5161 874 GYLMVDNVLGVRASQYVFDNGYVGN--------KNPVKRTPKH-KTLQKLVYHC---AGRYMVVGSCEEAGFSPKGEDGE 941 (1319)
T ss_pred cEEEEecccceeEEEEEeccceecc--------cCceeecccc-ccccceeeec---cceEEEEEeeeecCccccCCCCC
Confidence 5677777777888877654311100 1122223333 4566777777 7777666643 33
Q ss_pred -----------------cEEEEEcCCCceEEEeccCCceeEEEEeeecCC------CCCcEEEEEec---------CCeE
Q 001391 158 -----------------SIRVWDISNSSIILEVHSPERCLLYSMKLWGDN------LEALRIASGTI---------YNEI 205 (1088)
Q Consensus 158 -----------------~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s------~~~~~l~sg~~---------dg~I 205 (1088)
.|-+++..+.+.+-++.-++...++++++.--. ....++++|+. .|..
T Consensus 942 ~~i~~D~Nvphaeg~~~~vdL~spksw~vID~yef~~ne~v~~i~~~~l~~~~~tk~k~pyi~vgtt~~~gED~p~rG~~ 1021 (1319)
T COG5161 942 SGIPVDTNVPHAEGYRFYVDLYSPKSWEVIDTYEFDENEYVFHIKYLILDDMQGTKGKSPYILVGTTFIEGEDRPARGRL 1021 (1319)
T ss_pred ccCccCCCCcccccceeeEEEecCcceeEeeeeecccceeeeeeeeeeeeccccccCCCceEEEEeeecccCccCCcCce
Confidence 244555555666666666666666666553211 12236666653 3667
Q ss_pred EEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe--CCCCCEEEEEEcCCCCEEEEEECCCcEEEE
Q 001391 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV--GHEGSIFRIEWSSCGSKLVSVSDDRSARIW 283 (1088)
Q Consensus 206 ~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iW 283 (1088)
+++++- +..|... +.. +...++.+. .-++.|..++= -+|++ +.| ....|.+.
T Consensus 1022 hv~eII--~VVP~pg---------~P~------------t~~KLK~~~~Ee~kGTV~~vcE-V~G~~-~~~-qgqKV~Vr 1075 (1319)
T COG5161 1022 HVLEII--SVVPSPG---------SPF------------TDCKLKVLGIEETKGTVVRVCE-VRGKI-ALC-QGQKVMVR 1075 (1319)
T ss_pred EEEEEE--EecCCCC---------CCc------------ccceeeEEehhhcccEEEEEEE-EccEE-Eec-cCcEEEEE
Confidence 777654 1111110 000 111222211 12233332221 13333 332 33457777
Q ss_pred EcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcCCCceeEEE--c-ccCCCCeEEEEEcCCC
Q 001391 284 EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMI--K-EHIGRGIWRCLYDSLS 360 (1088)
Q Consensus 284 d~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~~~~~~~~~--~-~h~~~~V~~l~~~~dg 360 (1088)
+++.... .-.+ .+..-.....+...-+++++.|..-..+..+-...++.+.. . +.....+++..|.-+|
T Consensus 1076 ~i~~~~~-----iipV---~F~Dl~~ft~s~k~~~Nlll~gD~~qg~~F~gF~~ePyRm~l~s~s~~~~n~~s~efLv~G 1147 (1319)
T COG5161 1076 KIDRSSG-----IIPV---GFYDLHIFTSSIKVVKNLLLAGDIYQGLSFFGFQSEPYRMHLISSSEPLRNATSTEFLVTG 1147 (1319)
T ss_pred EecccCC-----ccee---EEEeeeeeeehhhhhhheeehhhhhcCcEEEEecCCcEEEEEecCCchhhcchhhHhhccC
Confidence 7765422 1111 22221122222222256777776555555555544444332 1 1111235666666555
Q ss_pred C--EEEEEeCCCCEEEEEcC
Q 001391 361 S--LLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 361 ~--~l~tg~~Dg~I~iwd~~ 378 (1088)
. +++++..+|.|++....
T Consensus 1148 ~~lyf~~~Da~gnih~l~Y~ 1167 (1319)
T COG5161 1148 NELYFLCCDAKGNIHGLTYS 1167 (1319)
T ss_pred CeeEEEEEcCCCCEEEEecC
Confidence 4 78889999999998774
No 484
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=34.71 E-value=7.9e+02 Score=28.57 Aligned_cols=42 Identities=14% Similarity=-0.007 Sum_probs=34.1
Q ss_pred eeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 001391 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (1088)
Q Consensus 248 ~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~ 289 (1088)
....+......+.+|..+|++++.++...=|.|.++|+..+.
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~ 340 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGI 340 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCCh
Confidence 344556667789999999999988887777999999998864
No 485
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=33.18 E-value=2.3e+02 Score=28.27 Aligned_cols=33 Identities=12% Similarity=0.116 Sum_probs=25.3
Q ss_pred cEEEEEEeccc--CC-CCEEEEEEcCCcEEEEEcCC
Q 001391 134 WVFDVCFLKVC--NG-NRSLAIGCSDNSIRVWDISN 166 (1088)
Q Consensus 134 ~I~~v~f~p~~--~d-~~~lasgs~Dg~V~iWd~~~ 166 (1088)
.|.+++|+|.. .+ +-+||+...++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 79999999932 22 23788889999999998653
No 486
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=31.72 E-value=6.1e+02 Score=26.36 Aligned_cols=55 Identities=18% Similarity=0.317 Sum_probs=40.1
Q ss_pred EEEECC-CEEEEEeCCCcEEEEcCC---CceeEEEcccCCCCeEEEEEcCCCCEEEEEeCC
Q 001391 313 DCCLTD-SFIITAGEDCTCRVWGSD---GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (1088)
Q Consensus 313 ~v~~~~-~~l~sg~~Dg~i~vWd~~---~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~D 369 (1088)
.++-.+ +.|+.+...+.|.+|++. .+.+..|..- + .|..+.++..|++|+|--.+
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~-~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-G-RVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-h-heeEEEeccccceEEEEEee
Confidence 344444 666666778899999984 3456667655 3 59999999999999997543
No 487
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=30.74 E-value=7.2e+02 Score=26.89 Aligned_cols=234 Identities=12% Similarity=0.059 Sum_probs=117.3
Q ss_pred EEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEE
Q 001391 22 ALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVK 100 (1088)
Q Consensus 22 ~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~ 100 (1088)
.|+-. || +..-..++ .+.|---|..+|+... +....+..-|+|..- ||| ..-++-+...|.
T Consensus 66 dvapa--pd----G~VWft~qg~gaiGhLdP~tGev~~-ypLg~Ga~Phgiv~g-------pdg----~~Witd~~~aI~ 127 (353)
T COG4257 66 DVAPA--PD----GAVWFTAQGTGAIGHLDPATGEVET-YPLGSGASPHGIVVG-------PDG----SAWITDTGLAIG 127 (353)
T ss_pred ccccC--CC----CceEEecCccccceecCCCCCceEE-EecCCCCCCceEEEC-------CCC----CeeEecCcceeE
Confidence 45555 66 54555555 3666666888887643 343466667888887 776 233332222343
Q ss_pred EEEeccCCCCCCCCCCccccccceee-eccCCCCcEEEEEEecccCCCCEEEEEEc---------CCcEEEEEcCCCceE
Q 001391 101 LFELNFELSPNSQYQPETCVNLSLVQ-SLPRLSHWVFDVCFLKVCNGNRSLAIGCS---------DNSIRVWDISNSSII 170 (1088)
Q Consensus 101 iw~l~~~~~~~~~~~~~~~~~~~~~~-~l~~h~~~I~~v~f~p~~~d~~~lasgs~---------Dg~V~iWd~~~~~~~ 170 (1088)
=.+-++.+ .+... .++.-.+......|.+ .|.+-.|+.. .+.|++|+...+
T Consensus 128 R~dpkt~e-------------vt~f~lp~~~a~~nlet~vfD~---~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG--- 188 (353)
T COG4257 128 RLDPKTLE-------------VTRFPLPLEHADANLETAVFDP---WGNLWFTGQIGAYGRLDPARNVISVFPAPQG--- 188 (353)
T ss_pred EecCcccc-------------eEEeecccccCCCcccceeeCC---CccEEEeeccccceecCcccCceeeeccCCC---
Confidence 33433221 11111 1222335677888888 8888788753 234555555332
Q ss_pred EEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeE
Q 001391 171 LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (1088)
Q Consensus 171 ~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1088)
..-|.++. .++|..-++.-.++.|-.-|..... .+.+-
T Consensus 189 --------~gpyGi~a---tpdGsvwyaslagnaiaridp~~~~-------------------------------aev~p 226 (353)
T COG4257 189 --------GGPYGICA---TPDGSVWYASLAGNAIARIDPFAGH-------------------------------AEVVP 226 (353)
T ss_pred --------CCCcceEE---CCCCcEEEEeccccceEEcccccCC-------------------------------cceec
Confidence 22233333 4667666665555666555544110 00000
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCC
Q 001391 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC 328 (1088)
Q Consensus 251 ~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg 328 (1088)
.-......-..+--+|.|+.-+|....+.+..+|...... +. +.+.+-..+-.++... +..-++-...|
T Consensus 227 ~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW--------~e-ypLPgs~arpys~rVD~~grVW~sea~ag 297 (353)
T COG4257 227 QPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSW--------IE-YPLPGSKARPYSMRVDRHGRVWLSEADAG 297 (353)
T ss_pred CCCcccccccccccCccCcEEEeccCCceeeEeCcccccc--------ee-eeCCCCCCCcceeeeccCCcEEeeccccC
Confidence 0011112234455567777777777777888887766432 11 3444444444555444 22223333334
Q ss_pred cEEEEcCCCceeEEE
Q 001391 329 TCRVWGSDGKQLKMI 343 (1088)
Q Consensus 329 ~i~vWd~~~~~~~~~ 343 (1088)
.|.-+|.....+..+
T Consensus 298 ai~rfdpeta~ftv~ 312 (353)
T COG4257 298 AIGRFDPETARFTVL 312 (353)
T ss_pred ceeecCcccceEEEe
Confidence 455555433334443
No 488
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.53 E-value=6.3e+02 Score=33.15 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=29.2
Q ss_pred EEecCCCce--eeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCC
Q 001391 8 EWRLDVGQY--LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA 53 (1088)
Q Consensus 8 iWdl~~g~~--~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t 53 (1088)
.|...+.+| ......++|+ |. ..++|.|+ .|.|++|-..-
T Consensus 24 f~~~~~~~~G~~~~~~~~afD--~~----q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 24 FAFDKTNRHGFPSTPSALAFD--PT----QGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred cccccceecCCCCCCcceeec--cc----cceEEEEEecccEEEecccc
Confidence 455555553 2345688999 88 89999999 69999998653
No 489
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=30.33 E-value=1.3e+03 Score=29.63 Aligned_cols=169 Identities=11% Similarity=0.029 Sum_probs=84.0
Q ss_pred eccCCeEEEEecCCeEEEEEeccCCcceeE-------EeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEE
Q 001391 427 LTSEDTLYIATNHGYLYHTKLCDMDSVNWN-------KILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIV 499 (1088)
Q Consensus 427 ~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~-------~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw 499 (1088)
......+++.|+.|.++.++........|. .+.....+..+..+-.... ..+...+++.+.+|.++-.
T Consensus 543 ~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~-----~~~~~~lvliT~~GyiKRi 617 (800)
T TIGR01063 543 ASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKPIVNLLPLQPDERITAILSVKE-----FDDGLYLFFATKNGVVKKT 617 (800)
T ss_pred ecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcCHHHhccCCCCCeEEEEEEecc-----CCCCCEEEEEeCCCEEEEE
Confidence 344568999999999988766554333221 0112222233332221111 1244678888999999887
Q ss_pred EEcCCCcCcc-eeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccc
Q 001391 500 RVVGDVHTPQ-LSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSC 578 (1088)
Q Consensus 500 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~ 578 (1088)
++..-..... ......+ .....+..+..+ ... ..++..+..|.+..+.+..-+........ ... ....
T Consensus 618 ~l~~~~~~~r~G~~aikl--ke~D~lv~v~~~-~~~-d~lll~Ts~Gr~~r~~v~eIp~~gr~~~G----v~~---i~L~ 686 (800)
T TIGR01063 618 SLTEFSNIRSNGIIAIKL--DDGDELISVRLT-SGD-DEVMLGSKNGKAVRFPEEDVRPMGRAARG----VRG---IKLK 686 (800)
T ss_pred EhHHhhhhccCCcccccC--CCCCEEEEEEEe-CCC-CEEEEEECCCcEEEEEhhhcCCcCCCCCC----eec---ccCC
Confidence 7654221111 0001111 112233333332 223 34444456677766665432211110000 000 1112
Q ss_pred cCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCc
Q 001391 579 FGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (1088)
Q Consensus 579 h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~ 611 (1088)
-+..|.++....++..|+..+..|.++...++.
T Consensus 687 ~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e 719 (800)
T TIGR01063 687 NEDFVVSLLVVSEESYLLIVTENGYGKRTSIEE 719 (800)
T ss_pred CCCEEEEEEEeccccEEEEEecCCcEEEEEHHH
Confidence 345576666555666888999999999888664
No 490
>PRK05560 DNA gyrase subunit A; Validated
Probab=29.12 E-value=1.3e+03 Score=29.49 Aligned_cols=259 Identities=12% Similarity=0.043 Sum_probs=116.3
Q ss_pred CCEEEEEeCCCcEEEEcCCC--------ceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCc
Q 001391 318 DSFIITAGEDCTCRVWGSDG--------KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHP 389 (1088)
Q Consensus 318 ~~~l~sg~~Dg~i~vWd~~~--------~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~ 389 (1088)
...++.-+.+|.++--+... .-+..+..-.++.+..+........|+..+..|.+.......-......+..
T Consensus 498 E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G 577 (805)
T PRK05560 498 EDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKEDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASRTARG 577 (805)
T ss_pred CCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCcCCCC
Confidence 46788889999998775511 1111111112233545444455556666677786665544211000000000
Q ss_pred cccccCCCcceEEeeeCCCccceeeccCCCCceEEEEec---cCCeEEEEecCCeEEEEEeccCCccee--EEeeeecCC
Q 001391 390 EAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLT---SEDTLYIATNHGYLYHTKLCDMDSVNW--NKILQVSEG 464 (1088)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s---~~~~ll~~t~~g~i~~~~~~~~~~~~~--~~~~~~~~~ 464 (1088)
..+. . ...+......+.++.+. .+..+++.|.+|++....+.+.....- ........+
T Consensus 578 --------~~i~--------~-ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~ 640 (805)
T PRK05560 578 --------RPIV--------N-LLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEG 640 (805)
T ss_pred --------eEHH--------H-hcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCC
Confidence 0000 0 00011122234444444 345788889999988776544321110 011111123
Q ss_pred cceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCc---ceeeeeeeeccccceeeeEEEeecCCCeEEEEE
Q 001391 465 MPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP---QLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTA 541 (1088)
Q Consensus 465 ~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~ 541 (1088)
..+..+... ...+.++..+..|.+..+....-.... ........ .....+...+ ....++.+++..
T Consensus 641 D~lv~v~~~--------~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L--~~~E~Vv~~~-~v~~~~~~il~v 709 (805)
T PRK05560 641 DELIGVRLT--------DGDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKL--REGDEVVSMD-VVREDSQEILTV 709 (805)
T ss_pred CEEEEEEEe--------CCCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccC--CCCCEEEEEE-EEcCCCcEEEEE
Confidence 333333221 223556666777887777654311110 00000111 2222343332 333444466777
Q ss_pred CCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCC
Q 001391 542 DPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLL 610 (1088)
Q Consensus 542 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~ 610 (1088)
+..|.++...+..-.....- ....... .+. .....+..+.....+..++..+.+|.+..++..
T Consensus 710 Tk~G~iKr~~l~e~~~~~R~----~kG~~~l-kl~-~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~ 772 (805)
T PRK05560 710 TENGYGKRTPVSEYRLQGRG----GKGVITI-KIT-EKNGKLVGALPVDDDDEIMLITDSGKLIRTRVS 772 (805)
T ss_pred EeCCeEEEEEHHHhhccCCC----CCcEEee-ecc-CCCCeEEEEEEecCCCeEEEEecCCeEEEEEHH
Confidence 78898888876532211000 0000111 111 112344444333444556777888988888765
No 491
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=28.96 E-value=1.3e+03 Score=29.32 Aligned_cols=66 Identities=18% Similarity=0.068 Sum_probs=45.4
Q ss_pred CcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEE----c-----------c---cCCCCeEEEEEcCCCCEEEEE
Q 001391 308 NARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMI----K-----------E---HIGRGIWRCLYDSLSSLLVTA 366 (1088)
Q Consensus 308 ~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~----~-----------~---h~~~~V~~l~~~~dg~~l~tg 366 (1088)
...|.+++.. +.+++.+-+||+|.++|. +-+.+... . + ....++-.++|+|.+..++.-
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 3557777765 788999999999999997 33222211 0 0 001134468899999999999
Q ss_pred eCCCCEE
Q 001391 367 GFDSAIK 373 (1088)
Q Consensus 367 ~~Dg~I~ 373 (1088)
..||.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 9999876
No 492
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=28.92 E-value=5.7e+02 Score=31.93 Aligned_cols=231 Identities=9% Similarity=0.029 Sum_probs=0.0
Q ss_pred ccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcce-eEEeeeecCCcceEEEecCCCCCCCcCCCCCeE
Q 001391 409 SEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVN-WNKILQVSEGMPIICMDLLSNEPKYPCGIDDWV 487 (1088)
Q Consensus 409 ~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~-~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~l 487 (1088)
++.+..+.+|. |.+++.+.+ +-++.|.+|.+|.|-+....... -..-.+.....+|.+.....-...+....++.-
T Consensus 220 PkrV~gL~gh~--~~qisvs~~-HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~~h 296 (1267)
T KOG0783|consen 220 PKRVPGLIGHK--VIQISVSHT-HSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGKSH 296 (1267)
T ss_pred ccccccccccc--eEEEEeecc-eeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhcccce
Q ss_pred EEecCCCCEEEEEEcCCCc-CcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcc
Q 001391 488 ALGDGKGNMTIVRVVGDVH-TPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKT 566 (1088)
Q Consensus 488 a~g~~dg~I~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 566 (1088)
-++-.+..|+.|-++++++ +.......+.+....+....+..+...++..+..-...-.+.+-|...............
T Consensus 297 sVawt~~~VY~wGlN~GQlGi~~n~~~Vt~Pr~l~~~~~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~k~~~n~~~lks 376 (1267)
T KOG0783|consen 297 SVAWTDTDVYSWGLNNGQLGISDNISVVTTPRRLAGLLSPVIHVVATTRATVCLLQNNSIIAFADYNQVKLPFNVDFLKS 376 (1267)
T ss_pred eeeeecceEEEecccCceecCCCCCceeecchhhcccccceEEEEecCccEEEEecCCcEEEEecccceecCcchhccce
Q ss_pred ccee-eeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeecccccccceeEEEE
Q 001391 567 NNVF-LVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSV 645 (1088)
Q Consensus 567 ~~~~-l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~ 645 (1088)
.... -+-.++.-|-..-.+-... |+.=..-|.|+.|+-.+..+ ...++.|...+. |..|+|
T Consensus 377 ~~V~gg~l~~~~~~~~k~~a~~~k-----ll~lte~g~Vy~w~s~ns~~------~~c~ftp~r~~~-------isdIa~ 438 (1267)
T KOG0783|consen 377 LKVTGGPLSLTRFNVRKLLASENK-----LLVLTELGEVYEWDSKNSTR------TSCKFTPLRIFE-------ISDIAW 438 (1267)
T ss_pred eEEecCccchhhhhhhhcchhhhh-----eeeeccCCeEEEEecCCCce------eeeecccceeee-------hhhhhh
Q ss_pred EeccCCceEEEEecCCCeEE
Q 001391 646 AKLRSNQTEIRSTGGDGCIC 665 (1088)
Q Consensus 646 ~~~~~~~~~l~t~g~Dg~i~ 665 (1088)
. ...|+-..+|||.+
T Consensus 439 ~-----~N~~~~~t~dGc~~ 453 (1267)
T KOG0783|consen 439 T-----ANSLILCTRDGCWK 453 (1267)
T ss_pred c-----cceEEEEecCccee
No 493
>PLN02153 epithiospecifier protein
Probab=28.31 E-value=8.8e+02 Score=27.13 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=15.6
Q ss_pred CCCEEEEEEcC-----CcEEEEEcCCCce
Q 001391 146 GNRSLAIGCSD-----NSIRVWDISNSSI 169 (1088)
Q Consensus 146 d~~~lasgs~D-----g~V~iWd~~~~~~ 169 (1088)
++.+.+.||.+ +.+.+||..+.+.
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W 113 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEW 113 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEE
Confidence 55666777653 3577888876544
No 494
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=27.54 E-value=8.8e+02 Score=26.90 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=32.8
Q ss_pred CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEe
Q 001391 267 CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAG 325 (1088)
Q Consensus 267 ~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~ 325 (1088)
+|+..++-+..|.+.-+|.++++. +.+. .+ .+....+.|.+.+++.+-
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~------e~Va--~v---pG~~rGL~f~G~llvVgm 259 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKF------QPVA--FL---PGFTRGLAFAGDFAFVGL 259 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcE------EEEE--EC---CCCCcccceeCCEEEEEe
Confidence 577788888889999999876643 3332 22 345677888877776654
No 495
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=25.91 E-value=9e+02 Score=26.46 Aligned_cols=198 Identities=11% Similarity=0.019 Sum_probs=112.9
Q ss_pred CCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec-cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEe
Q 001391 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH-SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV 210 (1088)
Q Consensus 132 ~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~-~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~ 210 (1088)
.+-+.++.++. ++...+..+.-++|.|+.+......+. .+.....|.+.. .|++...+..|.-..+.|+
T Consensus 86 ~~l~~Dv~vse-----~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v-----sGn~aYVadlddgfLivdv 155 (370)
T COG5276 86 RDLFADVRVSE-----EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV-----SGNYAYVADLDDGFLIVDV 155 (370)
T ss_pred hhhhheeEecc-----cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe-----cCCEEEEeeccCcEEEEEC
Confidence 35677888854 677777778889999998765432222 122234444443 5778888887777888888
Q ss_pred ccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcc
Q 001391 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (1088)
Q Consensus 211 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~ 290 (1088)
.+. .+.....+.....+.-..++.| |++-..+..|+-+.+-|+.....
T Consensus 156 sdp------------------------------ssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~s 203 (370)
T COG5276 156 SDP------------------------------SSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHS 203 (370)
T ss_pred CCC------------------------------CCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCC
Confidence 721 1223333343334444555554 56666777888899999988654
Q ss_pred cCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcCCCce-eEEEcccCCCCeEEE-EEcCCCCEEEEEeC
Q 001391 291 KDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQ-LKMIKEHIGRGIWRC-LYDSLSSLLVTAGF 368 (1088)
Q Consensus 291 ~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~~~~~-~~~~~~h~~~~V~~l-~~~~dg~~l~tg~~ 368 (1088)
+..+. -......+.++..++++....-.+--+.+-|.++.. ...+.......+.++ .+.-.+++......
T Consensus 204 -----Pvli~---~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadg 275 (370)
T COG5276 204 -----PVLIG---SYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADG 275 (370)
T ss_pred -----CeEEE---EEecCCceEEEEecCCeeEEEEcccceEEEecCCCCCceEeeccccCCcccccceecccceeeeecc
Confidence 22222 112223677888887766666566667777774322 222221111112222 23333455555666
Q ss_pred CCCEEEEEcCC
Q 001391 369 DSAIKVHQFQA 379 (1088)
Q Consensus 369 Dg~I~iwd~~~ 379 (1088)
+.-+.+-|...
T Consensus 276 a~gl~~idisn 286 (370)
T COG5276 276 AKGLPIIDISN 286 (370)
T ss_pred ccCceeEeccC
Confidence 66666666643
No 496
>COG4246 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.08 E-value=8.6e+02 Score=25.97 Aligned_cols=73 Identities=7% Similarity=-0.136 Sum_probs=40.3
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeee-CCC---EEEEEcCCCcEEEEeC
Q 001391 534 GHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASF-EDE---VLFCGDLRGNLVLFPL 609 (1088)
Q Consensus 534 dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~sp-dg~---~LatGs~dg~I~Iw~~ 609 (1088)
+|+.+++=-.+-+|-+|-++......++ ..-....|++ ...|+..+-.++.+| +|. -++++++.+..+.-++
T Consensus 144 dG~~~VsfEr~hRI~iyp~~p~~~~~p~---rqlp~~~Pa~-eLr~N~G~Eaia~a~~~gp~aga~VVvsEks~d~~~nl 219 (340)
T COG4246 144 DGDALVSFERDHRIWIYPVPPFAGWGPP---RQLPAPKPAT-ELRDNGGLEAIAAAPVNGPLAGALVVVSEKSEDKAGNL 219 (340)
T ss_pred cCceEEEeeccceeEEeccCCccCCCCc---ccCCCCCchh-hcccCCCeeeeeecCCCCCcccceEEEeecchhhhcch
Confidence 7788887777777777765522111111 1112333433 236677788888764 332 3556777766555544
Q ss_pred C
Q 001391 610 L 610 (1088)
Q Consensus 610 ~ 610 (1088)
.
T Consensus 220 ~ 220 (340)
T COG4246 220 S 220 (340)
T ss_pred h
Confidence 4
No 497
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=24.87 E-value=2.4e+02 Score=35.20 Aligned_cols=89 Identities=16% Similarity=0.287 Sum_probs=56.3
Q ss_pred CceEEEEEeeeCCCEEEEEcCCCcEEEEeCC----ccccccc------ccccccccCcceeecccccccceeEEEEEecc
Q 001391 580 GARIMCLDASFEDEVLFCGDLRGNLVLFPLL----RDLLNDK------SVALHVEVSPLNYFKGAHGISTVSTLSVAKLR 649 (1088)
Q Consensus 580 ~~~It~l~~spdg~~LatGs~dg~I~Iw~~~----~~~~~~~------~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~ 649 (1088)
+-.|.|+.-..+|+++.+|-.| +-||.+. ++-+... +......+-|..-..|.|| ++|++++..
T Consensus 181 GinV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipg-etI~Ql~vD--- 254 (1263)
T COG5308 181 GINVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPG-ETIKQLAVD--- 254 (1263)
T ss_pred CceeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcc-cchhheeec---
Confidence 3458888888899999888888 4455443 2111100 0011122334444556888 899999888
Q ss_pred CCceEEEEecCCCeEEEEEeecCCc
Q 001391 650 SNQTEIRSTGGDGCICYLEYDKDRE 674 (1088)
Q Consensus 650 ~~~~~l~t~g~Dg~i~iw~~~~~~~ 674 (1088)
.....|.+-..-..|+-+.+.....
T Consensus 255 qsRg~ly~Lr~kS~Vray~itkngl 279 (1263)
T COG5308 255 QSRGLLYVLRKKSAVRAYSITKNGL 279 (1263)
T ss_pred ccccceeeecccceeeeEeeecccc
Confidence 3446677777778889998876543
No 498
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=24.54 E-value=1.6e+02 Score=19.66 Aligned_cols=25 Identities=16% Similarity=0.395 Sum_probs=20.3
Q ss_pred CEEEEEEcCCcEEEEEcCCCceEEE
Q 001391 148 RSLAIGCSDNSIRVWDISNSSIILE 172 (1088)
Q Consensus 148 ~~lasgs~Dg~V~iWd~~~~~~~~~ 172 (1088)
..++.++.++.+..+|..+|+.+-+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEE
Confidence 3677788899999999988877654
No 499
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=21.80 E-value=1.4e+02 Score=28.63 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=27.9
Q ss_pred CceEEEeccCCceEEEEEecCCCcccccccccccccCCceeeeEEEeee
Q 001391 812 KSSWIATGCEDGTVRLTRYSPGFENWSSSKLLGEHVGGSAVRSICFVSE 860 (1088)
Q Consensus 812 ~~~~i~TG~eD~tIrl~~~~~~~~~~~~~~~~~~H~~gs~v~~~~f~~~ 860 (1088)
.+-+.++|=-|++||.+.+....+ .+..+..|.++...+.++|++|
T Consensus 22 t~llyl~gKGD~~ir~yEv~~~~p---~l~~l~~~~s~~~~~G~~~lPK 67 (136)
T PF08954_consen 22 TNLLYLAGKGDGNIRYYEVSDESP---YLHYLSEYRSPEPQKGFAFLPK 67 (136)
T ss_dssp T-EEEEEETT-S-EEEEEE-SSTT---SEEEEEEE--SS--SEEEE--G
T ss_pred CCEEEEEeccCcEEEEEEEcCCCC---ceEEccccccCCCeEeeEecCc
Confidence 357889999999999999976432 3556666666688999999977
No 500
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=21.62 E-value=6e+02 Score=27.26 Aligned_cols=77 Identities=17% Similarity=0.133 Sum_probs=50.0
Q ss_pred CCCcEEEEEEecccCC----CCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEE
Q 001391 131 LSHWVFDVCFLKVCNG----NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEII 206 (1088)
Q Consensus 131 h~~~I~~v~f~p~~~d----~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~ 206 (1088)
+...|+|++-.+-+.. -..|+.|.++|.|.|.|.+....+.++.-+.-....++.- .+..-+-.|+.++.||.|+
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G-~~devdyRI~Va~Rdg~iy 253 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSG-QYDEVDYRIVVACRDGKIY 253 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEe-eeeccceEEEEEeCCCEEE
Confidence 4567899887653211 1489999999999999998888887776553322211110 0111244788888999987
Q ss_pred EE
Q 001391 207 VW 208 (1088)
Q Consensus 207 vw 208 (1088)
+-
T Consensus 254 ~i 255 (257)
T PF14779_consen 254 TI 255 (257)
T ss_pred EE
Confidence 64
Done!