Query 001391
Match_columns 1088
No_of_seqs 608 out of 4823
Neff 9.3
Searched_HMMs 29240
Date Tue Mar 26 01:40:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001391.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001391hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 3.1E-54 1.1E-58 528.1 70.6 559 16-904 15-577 (577)
2 1nr0_A Actin interacting prote 100.0 2.7E-53 9.4E-58 522.7 67.2 586 8-905 9-609 (611)
3 1nr0_A Actin interacting prote 100.0 9.6E-53 3.3E-57 517.8 68.7 506 3-671 38-567 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 8.8E-51 3E-55 497.5 70.0 492 1-669 35-537 (577)
5 1pgu_A Actin interacting prote 100.0 4.3E-48 1.5E-52 477.0 65.4 581 7-907 8-614 (615)
6 3sfz_A APAF-1, apoptotic pepti 100.0 3.1E-46 1.1E-50 499.4 65.0 629 16-905 614-1247(1249)
7 1pgu_A Actin interacting prote 100.0 9.2E-46 3.1E-50 456.2 60.4 487 3-672 38-573 (615)
8 3sfz_A APAF-1, apoptotic pepti 100.0 7.2E-46 2.5E-50 495.8 57.6 509 1-672 634-1208(1249)
9 2oaj_A Protein SNI1; WD40 repe 100.0 1.9E-43 6.6E-48 451.0 60.1 512 15-669 15-659 (902)
10 2oaj_A Protein SNI1; WD40 repe 100.0 3.6E-41 1.2E-45 430.0 60.2 512 129-721 14-659 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 9.2E-37 3.1E-41 389.3 49.2 462 16-668 12-502 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 5.8E-34 2E-38 363.4 63.0 438 55-673 4-462 (814)
13 1vyh_C Platelet-activating fac 100.0 3.8E-35 1.3E-39 342.4 40.2 279 16-377 107-409 (410)
14 3ow8_A WD repeat-containing pr 100.0 4.7E-34 1.6E-38 321.3 40.2 283 16-377 31-319 (321)
15 1got_B GT-beta; complex (GTP-b 100.0 9.8E-34 3.3E-38 321.8 42.9 283 16-376 54-340 (340)
16 4gqb_B Methylosome protein 50; 100.0 1.2E-33 4.2E-38 320.7 39.1 293 6-379 16-331 (344)
17 2pbi_B Guanine nucleotide-bind 100.0 2.6E-33 9E-38 320.0 41.9 287 16-376 63-354 (354)
18 2ynn_A Coatomer subunit beta'; 100.0 1E-32 3.5E-37 308.0 41.7 279 16-378 12-301 (304)
19 3iz6_a 40S ribosomal protein R 100.0 9.1E-34 3.1E-38 327.3 33.6 295 16-379 65-375 (380)
20 4g56_B MGC81050 protein; prote 100.0 3.5E-33 1.2E-37 319.3 36.1 296 3-379 25-343 (357)
21 1erj_A Transcriptional repress 100.0 2E-32 6.9E-37 317.6 43.0 288 16-378 63-388 (393)
22 2ynn_A Coatomer subunit beta'; 100.0 1.3E-31 4.4E-36 299.1 43.0 288 55-447 4-300 (304)
23 3fm0_A Protein CIAO1; WDR39,SG 100.0 9.8E-32 3.3E-36 305.9 41.4 295 14-379 13-335 (345)
24 3ow8_A WD repeat-containing pr 100.0 4.8E-32 1.6E-36 305.0 37.9 290 57-446 25-318 (321)
25 2hes_X YDR267CP; beta-propelle 100.0 1.1E-31 3.7E-36 303.5 40.4 297 16-378 13-327 (330)
26 1vyh_C Platelet-activating fac 100.0 1.7E-31 5.8E-36 311.5 39.9 284 57-446 101-408 (410)
27 4ery_A WD repeat-containing pr 100.0 3.5E-31 1.2E-35 296.6 40.4 280 16-378 22-311 (312)
28 3frx_A Guanine nucleotide-bind 100.0 3.6E-31 1.2E-35 297.7 40.3 281 16-378 16-316 (319)
29 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.7E-31 2E-35 299.5 41.9 321 122-556 5-337 (345)
30 1r5m_A SIR4-interacting protei 100.0 3.8E-31 1.3E-35 309.0 40.8 348 6-447 27-423 (425)
31 3frx_A Guanine nucleotide-bind 100.0 7E-31 2.4E-35 295.3 39.8 290 122-503 7-317 (319)
32 2xzm_R RACK1; ribosome, transl 100.0 1.3E-30 4.5E-35 296.4 39.7 282 16-378 20-339 (343)
33 1got_B GT-beta; complex (GTP-b 100.0 4.3E-30 1.5E-34 291.7 43.6 292 122-500 45-340 (340)
34 2hes_X YDR267CP; beta-propelle 100.0 2E-30 7E-35 293.0 40.1 311 122-503 4-328 (330)
35 4gqb_B Methylosome protein 50; 100.0 4.8E-31 1.6E-35 299.4 33.9 306 45-449 15-331 (344)
36 3iz6_a 40S ribosomal protein R 100.0 1.8E-31 6.3E-36 308.0 30.9 320 157-611 46-375 (380)
37 2xzm_R RACK1; ribosome, transl 100.0 5.4E-30 1.8E-34 291.3 40.9 298 122-504 11-341 (343)
38 1gxr_A ESG1, transducin-like e 100.0 6.6E-30 2.3E-34 288.5 41.3 320 16-447 8-335 (337)
39 2pbi_B Guanine nucleotide-bind 100.0 1.2E-29 4E-34 289.7 41.9 295 122-500 54-354 (354)
40 4aow_A Guanine nucleotide-bind 100.0 1.3E-29 4.4E-34 286.9 40.7 283 16-378 37-336 (340)
41 4g56_B MGC81050 protein; prote 100.0 1.9E-30 6.3E-35 296.7 33.2 309 35-449 17-343 (357)
42 3v7d_B Cell division control p 100.0 3.2E-29 1.1E-33 297.5 44.8 276 16-379 120-421 (464)
43 3vl1_A 26S proteasome regulato 100.0 2.6E-30 8.9E-35 302.3 32.9 328 18-448 57-418 (420)
44 1gxr_A ESG1, transducin-like e 100.0 3.8E-29 1.3E-33 282.3 40.8 279 16-377 50-335 (337)
45 1r5m_A SIR4-interacting protei 100.0 8.8E-30 3E-34 297.4 36.8 293 1-378 65-424 (425)
46 2pm9_A Protein WEB1, protein t 100.0 3.3E-31 1.1E-35 309.2 24.3 306 1-379 42-414 (416)
47 3vl1_A 26S proteasome regulato 100.0 1.8E-29 6.1E-34 295.2 38.8 299 2-378 76-418 (420)
48 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.7E-29 1.6E-33 294.4 42.5 286 1-379 136-442 (445)
49 2pm9_A Protein WEB1, protein t 100.0 1.7E-30 5.9E-35 303.2 28.1 349 16-443 11-408 (416)
50 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.6E-28 1.2E-32 286.9 46.3 309 20-447 122-440 (445)
51 3zwl_B Eukaryotic translation 100.0 8.4E-29 2.9E-33 283.1 39.7 280 16-379 31-346 (369)
52 4aow_A Guanine nucleotide-bind 100.0 1.4E-28 4.6E-33 278.4 40.9 296 122-505 28-339 (340)
53 1erj_A Transcriptional repress 100.0 1.2E-28 4.1E-33 285.8 40.7 299 130-503 62-389 (393)
54 2j04_B YDR362CP, TAU91; beta p 100.0 8.5E-31 2.9E-35 312.7 22.9 305 1-379 180-517 (524)
55 3v7d_B Cell division control p 100.0 1.3E-28 4.6E-33 292.1 41.1 330 124-609 113-461 (464)
56 1k8k_C P40, ARP2/3 complex 41 100.0 8E-29 2.7E-33 284.2 37.9 300 16-378 7-360 (372)
57 3i2n_A WD repeat-containing pr 100.0 4.3E-29 1.5E-33 284.5 35.0 297 16-379 17-353 (357)
58 1sq9_A Antiviral protein SKI8; 100.0 5.2E-29 1.8E-33 288.8 35.4 283 16-378 15-394 (397)
59 3dm0_A Maltose-binding peripla 100.0 9.3E-29 3.2E-33 309.1 40.3 282 16-378 381-692 (694)
60 4ery_A WD repeat-containing pr 100.0 9.1E-28 3.1E-32 268.8 43.5 289 54-446 13-309 (312)
61 3ei3_B DNA damage-binding prot 100.0 2.3E-28 7.8E-33 282.2 36.2 289 16-378 72-381 (383)
62 2j04_B YDR362CP, TAU91; beta p 100.0 2.2E-29 7.5E-34 300.5 28.0 323 82-503 171-517 (524)
63 3gre_A Serine/threonine-protei 100.0 1.5E-28 5.1E-33 289.2 34.2 347 35-500 39-437 (437)
64 3k26_A Polycomb protein EED; W 100.0 6.3E-29 2.2E-33 284.0 29.2 325 16-378 17-365 (366)
65 4gga_A P55CDC, cell division c 100.0 1.3E-27 4.5E-32 279.7 38.9 277 20-378 108-394 (420)
66 4h5i_A Guanine nucleotide-exch 100.0 4.1E-28 1.4E-32 278.0 33.2 291 18-379 15-343 (365)
67 3odt_A Protein DOA1; ubiquitin 100.0 5.1E-27 1.7E-31 261.9 41.2 276 16-379 17-296 (313)
68 4ggc_A P55CDC, cell division c 100.0 3.2E-27 1.1E-31 264.4 38.9 277 20-378 28-314 (318)
69 3dm0_A Maltose-binding peripla 100.0 1.1E-27 3.7E-32 299.4 39.0 292 122-502 372-692 (694)
70 3dwl_C Actin-related protein 2 100.0 3.1E-29 1.1E-33 288.6 22.6 301 17-377 11-377 (377)
71 4a11_B DNA excision repair pro 100.0 8.2E-28 2.8E-32 279.2 34.1 318 3-379 22-365 (408)
72 3gre_A Serine/threonine-protei 100.0 1.8E-28 6.2E-33 288.5 27.9 296 16-376 62-437 (437)
73 2pm7_B Protein transport prote 100.0 2.7E-27 9.4E-32 263.0 35.4 254 58-378 3-284 (297)
74 3k26_A Polycomb protein EED; W 100.0 3.2E-27 1.1E-31 269.8 35.1 305 57-447 10-364 (366)
75 4aez_A CDC20, WD repeat-contai 100.0 9.6E-27 3.3E-31 270.6 38.8 274 20-379 96-380 (401)
76 1p22_A F-BOX/WD-repeat protein 100.0 2.6E-27 8.7E-32 278.6 34.3 269 16-379 132-414 (435)
77 2j04_A TAU60, YPL007P, hypothe 100.0 1.7E-28 5.8E-33 284.5 23.4 323 14-437 12-348 (588)
78 2pm7_B Protein transport prote 100.0 4.3E-27 1.5E-31 261.5 33.5 254 16-335 8-283 (297)
79 1sq9_A Antiviral protein SKI8; 100.0 1.2E-26 4.2E-31 268.8 37.0 312 58-448 10-394 (397)
80 1k8k_C P40, ARP2/3 complex 41 100.0 8.9E-27 3E-31 267.1 35.4 292 129-504 5-362 (372)
81 4e54_B DNA damage-binding prot 100.0 6.2E-28 2.1E-32 283.9 26.0 286 16-379 118-430 (435)
82 3dwl_C Actin-related protein 2 100.0 3.3E-28 1.1E-32 280.0 21.7 248 130-448 9-280 (377)
83 3bg1_A Protein SEC13 homolog; 100.0 1.6E-27 5.5E-32 267.4 26.4 260 8-335 4-291 (316)
84 4e54_B DNA damage-binding prot 100.0 2E-27 6.8E-32 279.6 28.4 296 56-452 111-430 (435)
85 3i2n_A WD repeat-containing pr 100.0 1.5E-26 5E-31 263.5 34.5 313 55-449 8-353 (357)
86 3ei3_B DNA damage-binding prot 100.0 3.2E-26 1.1E-30 264.2 37.4 303 122-503 63-382 (383)
87 3odt_A Protein DOA1; ubiquitin 100.0 1.2E-25 4E-30 250.9 40.1 286 50-449 3-296 (313)
88 3zwl_B Eukaryotic translation 100.0 3.3E-25 1.1E-29 253.2 44.5 298 56-449 24-346 (369)
89 4h5i_A Guanine nucleotide-exch 100.0 1.3E-26 4.5E-31 265.5 32.0 297 256-612 14-344 (365)
90 3bg1_A Protein SEC13 homolog; 100.0 2E-27 6.8E-32 266.7 24.5 252 60-378 9-292 (316)
91 3f3f_A Nucleoporin SEH1; struc 100.0 1.4E-26 4.9E-31 261.7 31.7 298 16-379 10-337 (351)
92 3dw8_B Serine/threonine-protei 100.0 2.4E-26 8.3E-31 270.8 34.6 299 16-377 27-444 (447)
93 4gga_A P55CDC, cell division c 100.0 1.7E-25 5.7E-30 261.8 40.0 281 68-451 108-397 (420)
94 4aez_A CDC20, WD repeat-contai 100.0 7.3E-26 2.5E-30 263.1 35.3 261 1-343 110-387 (401)
95 3mmy_A MRNA export factor; mRN 99.9 3.6E-26 1.2E-30 261.1 31.4 281 16-377 38-344 (368)
96 1yfq_A Cell cycle arrest prote 99.9 9E-26 3.1E-30 255.6 32.1 279 15-376 9-321 (342)
97 4ggc_A P55CDC, cell division c 99.9 6.3E-25 2.2E-29 245.6 38.4 280 68-449 28-315 (318)
98 1p22_A F-BOX/WD-repeat protein 99.9 8.4E-26 2.9E-30 265.7 31.4 255 1-336 150-413 (435)
99 4a11_B DNA excision repair pro 99.9 1E-25 3.5E-30 261.4 31.2 366 43-502 22-404 (408)
100 3jrp_A Fusion protein of prote 99.9 5.1E-25 1.7E-29 252.8 35.1 256 54-378 1-286 (379)
101 3jrp_A Fusion protein of prote 99.9 1.2E-24 4.1E-29 249.7 36.4 254 16-335 10-285 (379)
102 3dw8_B Serine/threonine-protei 99.9 4.9E-25 1.7E-29 259.7 33.7 319 65-445 28-442 (447)
103 2j04_A TAU60, YPL007P, hypothe 99.9 8.2E-27 2.8E-31 270.4 17.7 319 129-600 12-350 (588)
104 1k32_A Tricorn protease; prote 99.9 4.1E-23 1.4E-27 269.7 54.7 442 4-610 1-501 (1045)
105 3vu4_A KMHSV2; beta-propeller 99.9 2.8E-24 9.7E-29 245.2 33.1 285 16-378 18-335 (355)
106 1yfq_A Cell cycle arrest prote 99.9 5.7E-24 2E-28 240.7 35.0 298 252-609 7-322 (342)
107 2w18_A PALB2, fancn, partner a 99.9 4.3E-24 1.5E-28 232.9 31.9 294 16-377 38-355 (356)
108 2aq5_A Coronin-1A; WD40 repeat 99.9 6.6E-25 2.2E-29 255.1 27.2 285 19-379 36-342 (402)
109 3f3f_A Nucleoporin SEH1; struc 99.9 1.1E-23 3.9E-28 237.8 34.9 309 126-505 5-339 (351)
110 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.1E-23 3.6E-28 248.9 36.1 285 17-378 4-390 (450)
111 2xyi_A Probable histone-bindin 99.9 1.8E-23 6.1E-28 245.3 35.2 297 18-379 46-410 (430)
112 3mmy_A MRNA export factor; mRN 99.9 2.4E-23 8.2E-28 237.6 35.0 294 48-443 23-340 (368)
113 1k32_A Tricorn protease; prote 99.9 3.2E-22 1.1E-26 261.3 49.1 441 67-670 16-501 (1045)
114 2aq5_A Coronin-1A; WD40 repeat 99.9 6.1E-24 2.1E-28 246.9 28.9 260 1-336 54-341 (402)
115 2vdu_B TRNA (guanine-N(7)-)-me 99.9 3.5E-23 1.2E-27 244.4 35.0 205 129-377 99-337 (450)
116 3jro_A Fusion protein of prote 99.9 3.2E-24 1.1E-28 269.8 25.9 255 16-336 8-284 (753)
117 3bws_A Protein LP49; two-domai 99.9 7.4E-23 2.5E-27 240.1 35.4 273 18-378 123-431 (433)
118 4gq1_A NUP37; propeller, trans 99.9 1.9E-23 6.4E-28 241.9 29.6 315 35-378 31-388 (393)
119 3vu4_A KMHSV2; beta-propeller 99.9 1.4E-22 4.7E-27 231.2 34.4 315 48-451 3-338 (355)
120 3jro_A Fusion protein of prote 99.9 2.4E-23 8.3E-28 261.7 28.5 253 58-379 3-285 (753)
121 3lrv_A PRE-mRNA-splicing facto 99.9 3.6E-23 1.2E-27 234.8 27.2 272 35-378 48-332 (343)
122 1l0q_A Surface layer protein; 99.9 1.7E-21 5.8E-26 225.0 38.9 261 36-379 3-275 (391)
123 1l0q_A Surface layer protein; 99.9 4.1E-21 1.4E-25 221.9 40.9 261 1-348 9-287 (391)
124 4gq1_A NUP37; propeller, trans 99.9 1.7E-22 5.8E-27 233.9 29.3 309 67-449 17-389 (393)
125 2xyi_A Probable histone-bindin 99.9 2.4E-22 8.4E-27 235.6 28.6 257 16-336 127-409 (430)
126 3lrv_A PRE-mRNA-splicing facto 99.9 7.7E-22 2.6E-26 223.9 29.3 273 146-502 47-332 (343)
127 3bws_A Protein LP49; two-domai 99.9 1.1E-20 3.7E-25 221.5 38.4 296 45-447 102-430 (433)
128 2w18_A PALB2, fancn, partner a 99.9 1.3E-21 4.4E-26 213.5 26.4 249 4-335 63-355 (356)
129 2hqs_A Protein TOLB; TOLB, PAL 99.9 6.6E-20 2.3E-24 213.5 34.4 303 19-431 64-409 (415)
130 1nir_A Nitrite reductase; hemo 99.9 4.4E-19 1.5E-23 213.2 38.7 333 24-455 144-517 (543)
131 1nir_A Nitrite reductase; hemo 99.8 3.7E-19 1.3E-23 213.8 33.2 299 2-379 157-514 (543)
132 2hqs_A Protein TOLB; TOLB, PAL 99.8 1.2E-18 4.1E-23 202.9 29.4 271 5-360 94-409 (415)
133 2ecf_A Dipeptidyl peptidase IV 99.8 6.6E-18 2.3E-22 212.6 32.7 309 17-378 36-412 (741)
134 1xfd_A DIP, dipeptidyl aminope 99.8 1.6E-18 5.4E-23 217.6 24.9 326 6-378 5-392 (723)
135 2ojh_A Uncharacterized protein 99.8 2.3E-17 7.8E-22 181.3 25.3 250 1-328 19-293 (297)
136 2z3z_A Dipeptidyl aminopeptida 99.8 1.1E-16 3.8E-21 200.1 32.3 291 2-379 43-435 (706)
137 2ecf_A Dipeptidyl peptidase IV 99.8 5.6E-17 1.9E-21 204.1 29.0 291 5-380 65-460 (741)
138 1ri6_A Putative isomerase YBHE 99.8 5.6E-16 1.9E-20 174.6 32.8 285 2-361 13-335 (343)
139 3vgz_A Uncharacterized protein 99.8 2.2E-15 7.4E-20 170.7 37.3 266 18-370 41-335 (353)
140 2ojh_A Uncharacterized protein 99.7 2.3E-16 7.9E-21 173.2 27.2 249 43-370 21-293 (297)
141 1ri6_A Putative isomerase YBHE 99.7 1.4E-15 4.7E-20 171.4 33.1 275 36-378 5-307 (343)
142 3u4y_A Uncharacterized protein 99.7 2E-15 6.8E-20 169.6 34.0 275 35-380 10-305 (331)
143 1pby_B Quinohemoprotein amine 99.7 6.8E-16 2.3E-20 173.4 29.6 262 36-379 2-310 (337)
144 2z3z_A Dipeptidyl aminopeptida 99.7 3.8E-16 1.3E-20 195.3 29.3 295 36-377 37-387 (706)
145 1xfd_A DIP, dipeptidyl aminope 99.7 6.3E-16 2.1E-20 193.9 26.3 287 1-368 34-429 (723)
146 1pby_B Quinohemoprotein amine 99.7 1.1E-15 3.8E-20 171.7 25.7 256 2-347 9-321 (337)
147 3u4y_A Uncharacterized protein 99.7 5.2E-15 1.8E-19 166.2 30.1 265 2-347 18-314 (331)
148 3hfq_A Uncharacterized protein 99.7 5E-14 1.7E-18 159.4 37.0 262 3-335 15-315 (347)
149 3o4h_A Acylamino-acid-releasin 99.7 3.5E-15 1.2E-19 182.0 27.9 266 17-378 21-314 (582)
150 3hfq_A Uncharacterized protein 99.7 3.2E-14 1.1E-18 161.0 33.7 268 44-378 16-316 (347)
151 3vgz_A Uncharacterized protein 99.6 4.5E-14 1.5E-18 159.8 30.5 243 3-328 68-335 (353)
152 1z68_A Fibroblast activation p 99.6 5.7E-15 1.9E-19 185.1 22.6 305 21-378 19-390 (719)
153 2oit_A Nucleoporin 214KDA; NH2 99.6 9.1E-14 3.1E-18 162.2 30.3 208 133-379 37-278 (434)
154 1jmx_B Amine dehydrogenase; ox 99.6 5.1E-14 1.8E-18 159.0 26.8 294 22-379 4-325 (349)
155 1z68_A Fibroblast activation p 99.6 1.8E-14 6.1E-19 180.6 24.0 301 2-378 34-442 (719)
156 3o4h_A Acylamino-acid-releasin 99.6 3.7E-14 1.3E-18 172.9 24.8 231 64-377 20-274 (582)
157 1jmx_B Amine dehydrogenase; ox 99.6 1.6E-13 5.6E-18 154.8 28.4 262 2-346 19-335 (349)
158 3scy_A Hypothetical bacterial 99.6 1.5E-12 5.2E-17 148.1 36.3 285 35-378 13-336 (361)
159 3scy_A Hypothetical bacterial 99.6 1.7E-12 5.9E-17 147.7 36.2 289 2-357 25-360 (361)
160 2oit_A Nucleoporin 214KDA; NH2 99.6 4.3E-14 1.5E-18 165.0 22.3 223 4-288 23-279 (434)
161 4a5s_A Dipeptidyl peptidase 4 99.6 2.4E-13 8.4E-18 170.5 27.7 325 5-377 4-396 (740)
162 1jof_A Carboxy-CIS,CIS-muconat 99.5 7.2E-12 2.5E-16 142.8 29.1 276 37-379 4-341 (365)
163 1jof_A Carboxy-CIS,CIS-muconat 99.5 6.7E-12 2.3E-16 143.1 28.1 251 19-340 41-344 (365)
164 2oiz_A Aromatic amine dehydrog 99.5 2.1E-11 7.3E-16 138.5 31.7 273 3-361 30-360 (361)
165 2oiz_A Aromatic amine dehydrog 99.5 9.6E-12 3.3E-16 141.4 28.8 257 43-379 30-334 (361)
166 3pe7_A Oligogalacturonate lyas 99.5 3.3E-12 1.1E-16 146.6 24.8 260 45-380 11-330 (388)
167 1q7f_A NHL, brain tumor CG1071 99.5 2.6E-11 9E-16 132.8 29.7 234 67-378 31-279 (286)
168 4a5s_A Dipeptidyl peptidase 4 99.5 2.8E-11 9.4E-16 151.8 33.6 307 3-378 35-448 (740)
169 3pe7_A Oligogalacturonate lyas 99.5 9.7E-12 3.3E-16 142.7 26.8 273 23-377 41-380 (388)
170 1q7f_A NHL, brain tumor CG1071 99.4 1.3E-10 4.4E-15 127.2 31.0 241 130-447 27-278 (286)
171 3azo_A Aminopeptidase; POP fam 99.4 2.7E-11 9.2E-16 150.0 28.5 283 16-377 22-365 (662)
172 3fvz_A Peptidyl-glycine alpha- 99.4 2.9E-11 9.9E-16 135.6 25.2 245 16-337 22-322 (329)
173 3dsm_A Uncharacterized protein 99.4 5.6E-10 1.9E-14 125.0 32.0 266 2-356 15-319 (328)
174 3fvz_A Peptidyl-glycine alpha- 99.3 5.1E-10 1.7E-14 125.4 29.9 238 67-379 25-322 (329)
175 3c5m_A Oligogalacturonate lyas 99.3 1.9E-10 6.5E-15 132.0 26.5 258 46-380 12-330 (396)
176 2z2n_A Virginiamycin B lyase; 99.3 7.9E-09 2.7E-13 113.3 37.8 287 3-379 2-295 (299)
177 3c5m_A Oligogalacturonate lyas 99.3 3E-11 1E-15 138.8 17.8 271 20-377 38-380 (396)
178 2gop_A Trilobed protease; beta 99.3 4.4E-10 1.5E-14 126.7 26.5 248 3-348 42-341 (347)
179 2dg1_A DRP35, lactonase; beta 99.3 4.9E-10 1.7E-14 125.6 26.5 271 18-370 6-301 (333)
180 3azo_A Aminopeptidase; POP fam 99.3 1E-10 3.4E-15 144.8 22.6 268 2-343 45-375 (662)
181 1qks_A Cytochrome CD1 nitrite 99.3 2E-08 6.8E-13 120.1 40.7 273 35-379 167-477 (567)
182 2gop_A Trilobed protease; beta 99.3 3.2E-09 1.1E-13 119.6 31.4 238 43-378 42-330 (347)
183 2z2n_A Virginiamycin B lyase; 99.2 5E-08 1.7E-12 106.8 38.9 274 66-447 15-293 (299)
184 3e5z_A Putative gluconolactona 99.2 1.6E-09 5.4E-14 119.3 26.7 247 55-380 18-287 (296)
185 2dg1_A DRP35, lactonase; beta 99.2 1.2E-09 4.1E-14 122.4 25.2 269 67-440 7-301 (333)
186 3dsm_A Uncharacterized protein 99.2 1.6E-09 5.4E-14 121.3 25.5 261 43-382 16-305 (328)
187 1qks_A Cytochrome CD1 nitrite 99.2 4.5E-08 1.5E-12 117.1 38.7 306 2-379 175-538 (567)
188 3no2_A Uncharacterized protein 99.1 7.7E-09 2.6E-13 112.3 26.4 185 35-289 5-197 (276)
189 2qc5_A Streptogramin B lactona 99.1 1.3E-07 4.5E-12 103.5 35.0 273 18-377 20-298 (300)
190 2xdw_A Prolyl endopeptidase; a 99.1 1.6E-08 5.4E-13 126.0 30.6 240 19-338 126-416 (710)
191 3no2_A Uncharacterized protein 99.1 1.1E-08 3.7E-13 111.1 25.5 209 89-367 6-231 (276)
192 1rwi_B Serine/threonine-protei 99.1 9.9E-09 3.4E-13 110.9 24.7 236 67-379 25-264 (270)
193 2xdw_A Prolyl endopeptidase; a 99.1 2.8E-08 9.7E-13 123.7 31.3 243 67-379 126-414 (710)
194 3e5z_A Putative gluconolactona 99.1 1.7E-08 5.8E-13 110.9 26.1 235 125-447 20-284 (296)
195 2qc5_A Streptogramin B lactona 99.1 3E-07 1E-11 100.6 35.9 273 66-446 20-297 (300)
196 4a2l_A BT_4663, two-component 99.1 3.3E-05 1.1E-09 97.3 59.2 464 4-611 107-614 (795)
197 2mad_H Methylamine dehydrogena 99.0 4.6E-07 1.6E-11 102.8 35.1 270 35-379 32-350 (373)
198 3sjl_D Methylamine dehydrogena 99.0 8.1E-08 2.8E-12 107.7 28.0 272 23-379 38-363 (386)
199 2bkl_A Prolyl endopeptidase; m 99.0 1.8E-08 6.3E-13 125.1 25.2 201 129-378 117-348 (695)
200 1rwi_B Serine/threonine-protei 99.0 5.1E-08 1.8E-12 105.2 23.9 234 19-336 25-263 (270)
201 4a2l_A BT_4663, two-component 99.0 6.1E-05 2.1E-09 94.8 54.9 456 18-612 88-572 (795)
202 2bkl_A Prolyl endopeptidase; m 99.0 1.7E-08 6E-13 125.3 21.9 248 19-346 122-406 (695)
203 3v9f_A Two-component system se 98.9 0.00072 2.5E-08 84.8 61.1 470 19-612 67-569 (781)
204 3c75_H MADH, methylamine dehyd 98.9 2.1E-07 7.1E-12 106.3 25.4 261 44-379 99-402 (426)
205 1yr2_A Prolyl oligopeptidase; 98.9 2.5E-07 8.4E-12 115.8 28.2 245 19-344 164-448 (741)
206 3q7m_A Lipoprotein YFGL, BAMB; 98.9 2.1E-06 7.2E-11 97.7 33.6 261 36-379 54-337 (376)
207 1pjx_A Dfpase, DIISOPROPYLFLUO 98.8 1.9E-06 6.6E-11 94.9 31.0 241 19-335 19-297 (314)
208 1yr2_A Prolyl oligopeptidase; 98.8 3.3E-07 1.1E-11 114.7 27.2 236 67-379 164-441 (741)
209 1xip_A Nucleoporin NUP159; bet 98.8 4.1E-08 1.4E-12 110.6 17.0 170 134-366 39-231 (388)
210 3sjl_D Methylamine dehydrogena 98.8 1.2E-06 4.2E-11 98.1 28.4 273 3-359 58-384 (386)
211 3hrp_A Uncharacterized protein 98.8 8.6E-07 2.9E-11 102.0 27.7 249 133-445 131-406 (409)
212 1pjx_A Dfpase, DIISOPROPYLFLUO 98.8 7.3E-07 2.5E-11 98.4 26.0 239 67-378 19-298 (314)
213 3hrp_A Uncharacterized protein 98.8 1.7E-06 5.7E-11 99.6 28.0 235 18-335 131-408 (409)
214 2mad_H Methylamine dehydrogena 98.8 1.5E-05 5.1E-10 90.3 35.4 254 5-343 48-357 (373)
215 3v9f_A Two-component system se 98.8 0.00087 3E-08 84.0 54.9 467 5-611 88-611 (781)
216 3g4e_A Regucalcin; six bladed 98.7 5.1E-06 1.8E-10 91.1 30.0 227 68-368 15-261 (297)
217 1xip_A Nucleoporin NUP159; bet 98.7 3.3E-07 1.1E-11 103.2 19.7 172 19-275 39-232 (388)
218 3ei3_A DNA damage-binding prot 98.7 0.0027 9.3E-08 81.8 57.6 508 45-668 493-1059(1158)
219 3q7m_A Lipoprotein YFGL, BAMB; 98.7 1.3E-05 4.5E-10 91.0 32.4 285 2-376 61-375 (376)
220 1yiq_A Quinohemoprotein alcoho 98.7 3.5E-06 1.2E-10 103.7 28.2 303 35-368 121-538 (689)
221 1kb0_A Quinohemoprotein alcoho 98.7 1.1E-06 3.7E-11 108.0 23.4 298 35-364 128-535 (677)
222 3g4e_A Regucalcin; six bladed 98.7 4.7E-06 1.6E-10 91.3 26.0 201 3-275 34-260 (297)
223 3dr2_A Exported gluconolactona 98.6 3.9E-06 1.3E-10 92.4 24.4 228 67-374 46-302 (305)
224 2qe8_A Uncharacterized protein 98.6 3.9E-06 1.3E-10 94.2 24.8 275 66-373 17-315 (343)
225 2ghs_A AGR_C_1268P; regucalcin 98.6 5.4E-05 1.8E-09 84.1 33.5 226 68-368 51-291 (326)
226 3c75_H MADH, methylamine dehyd 98.6 6.8E-06 2.3E-10 93.8 25.8 267 4-343 99-409 (426)
227 3iuj_A Prolyl endopeptidase; h 98.6 5.9E-06 2E-10 102.3 26.4 246 18-344 129-412 (693)
228 3hxj_A Pyrrolo-quinoline quino 98.6 9.1E-07 3.1E-11 98.4 17.4 309 7-445 11-320 (330)
229 1yiq_A Quinohemoprotein alcoho 98.5 2E-05 6.7E-10 97.0 27.1 51 327-379 454-505 (689)
230 1mda_H Methylamine dehydrogena 98.5 3.6E-06 1.2E-10 94.5 18.6 252 45-379 47-346 (368)
231 2ghs_A AGR_C_1268P; regucalcin 98.4 4E-05 1.4E-09 85.1 26.8 199 3-275 70-290 (326)
232 3ei3_A DNA damage-binding prot 98.4 0.02 6.9E-07 73.8 59.9 147 483-672 843-1000(1158)
233 3hxj_A Pyrrolo-quinoline quino 98.4 6.5E-06 2.2E-10 91.4 18.0 278 2-378 38-323 (330)
234 1kb0_A Quinohemoprotein alcoho 98.4 5E-05 1.7E-09 93.2 27.4 50 328-379 457-507 (677)
235 2hz6_A Endoplasmic reticulum t 98.4 2.2E-07 7.6E-12 105.5 5.7 198 89-360 11-215 (369)
236 3iuj_A Prolyl endopeptidase; h 98.4 1.7E-05 5.8E-10 98.1 23.1 200 130-379 126-359 (693)
237 3dr2_A Exported gluconolactona 98.3 8.8E-05 3E-09 81.4 23.4 226 20-332 47-302 (305)
238 1mda_H Methylamine dehydrogena 98.2 3E-05 1E-09 87.0 19.3 270 5-358 47-366 (368)
239 2ece_A 462AA long hypothetical 98.2 0.00056 1.9E-08 77.1 28.1 266 44-367 43-399 (462)
240 2qe8_A Uncharacterized protein 98.2 0.00013 4.5E-09 81.6 23.1 244 18-333 17-317 (343)
241 2iwa_A Glutamine cyclotransfer 98.2 0.00024 8.1E-09 75.3 22.8 195 20-288 23-238 (266)
242 2ece_A 462AA long hypothetical 98.2 0.00073 2.5E-08 76.2 27.8 204 35-288 95-353 (462)
243 1npe_A Nidogen, entactin; glyc 98.1 0.0024 8.2E-08 68.2 30.0 248 36-361 2-263 (267)
244 1kv9_A Type II quinohemoprotei 98.1 0.00031 1.1E-08 86.0 25.4 166 35-216 117-337 (668)
245 3nol_A Glutamine cyclotransfer 98.0 0.00038 1.3E-08 72.8 21.1 182 20-277 45-245 (262)
246 2iwa_A Glutamine cyclotransfer 98.0 0.00081 2.8E-08 71.2 23.8 206 122-378 9-236 (266)
247 2hz6_A Endoplasmic reticulum t 98.0 8.4E-07 2.9E-11 100.7 0.5 180 146-379 8-192 (369)
248 2ad6_A Methanol dehydrogenase 98.0 0.00068 2.3E-08 81.2 25.7 46 317-362 474-520 (571)
249 3mbr_X Glutamine cyclotransfer 98.0 0.00095 3.3E-08 69.2 22.1 152 20-214 23-181 (243)
250 3nok_A Glutaminyl cyclase; bet 97.9 0.00035 1.2E-08 73.1 18.7 148 20-212 57-210 (268)
251 3nol_A Glutamine cyclotransfer 97.9 0.001 3.5E-08 69.5 21.8 193 124-368 33-244 (262)
252 1fwx_A Nitrous oxide reductase 97.8 0.0013 4.4E-08 76.9 23.1 284 43-368 24-407 (595)
253 3mbr_X Glutamine cyclotransfer 97.8 0.0036 1.2E-07 64.9 23.9 194 122-368 9-223 (243)
254 3nok_A Glutaminyl cyclase; bet 97.8 0.0018 6.1E-08 67.7 20.3 191 123-367 44-253 (268)
255 1w6s_A Methanol dehydrogenase 97.8 0.0058 2E-07 73.1 27.8 47 315-361 481-528 (599)
256 1kv9_A Type II quinohemoprotei 97.7 0.0025 8.7E-08 77.9 24.5 51 327-379 437-488 (668)
257 1flg_A Protein (quinoprotein e 97.7 0.0042 1.4E-07 74.4 25.1 74 277-361 465-541 (582)
258 2ad6_A Methanol dehydrogenase 97.6 0.015 5E-07 69.6 28.8 52 326-379 442-494 (571)
259 2fp8_A Strictosidine synthase; 97.6 0.0067 2.3E-07 66.7 24.0 112 258-379 186-313 (322)
260 1k3i_A Galactose oxidase precu 97.6 0.0016 5.6E-08 79.6 20.1 116 22-171 190-328 (656)
261 2p4o_A Hypothetical protein; p 97.5 0.036 1.2E-06 60.3 27.7 247 53-370 21-279 (306)
262 3qqz_A Putative uncharacterize 97.5 0.042 1.5E-06 57.6 26.5 210 126-375 20-249 (255)
263 2xbg_A YCF48-like protein; pho 97.5 0.12 4.3E-06 56.6 31.5 274 18-376 36-319 (327)
264 1flg_A Protein (quinoprotein e 97.3 0.19 6.5E-06 59.9 33.0 51 327-379 465-516 (582)
265 1npe_A Nidogen, entactin; glyc 97.3 0.23 7.7E-06 52.5 30.2 194 133-378 36-237 (267)
266 1w6s_A Methanol dehydrogenase 97.3 0.11 3.7E-06 62.0 29.9 52 326-379 451-503 (599)
267 1ijq_A LDL receptor, low-densi 97.2 0.35 1.2E-05 52.6 31.5 236 36-343 2-245 (316)
268 1k3i_A Galactose oxidase precu 97.2 0.0073 2.5E-07 73.8 19.7 95 98-211 220-322 (656)
269 2fp8_A Strictosidine synthase; 97.2 0.059 2E-06 59.0 25.2 238 20-336 21-312 (322)
270 3qqz_A Putative uncharacterize 97.2 0.25 8.7E-06 51.6 27.7 202 18-284 27-250 (255)
271 1fwx_A Nitrous oxide reductase 97.1 0.017 5.8E-07 67.5 19.4 199 35-287 101-361 (595)
272 2xbg_A YCF48-like protein; pho 97.0 0.56 1.9E-05 51.3 31.7 193 257-499 122-318 (327)
273 2p4o_A Hypothetical protein; p 96.9 0.57 2E-05 50.6 29.2 208 122-379 22-242 (306)
274 3v64_C Agrin; beta propeller, 96.8 0.52 1.8E-05 52.1 28.4 231 36-344 45-283 (349)
275 3v65_B Low-density lipoprotein 96.7 0.7 2.4E-05 51.8 28.7 232 36-344 88-326 (386)
276 3v65_B Low-density lipoprotein 96.7 0.66 2.3E-05 52.1 28.4 222 89-377 88-316 (386)
277 3tc9_A Hypothetical hydrolase; 96.6 0.32 1.1E-05 55.6 25.3 201 131-377 177-428 (430)
278 3amr_A 3-phytase; beta-propell 96.6 0.4 1.4E-05 52.2 24.0 191 43-286 49-262 (355)
279 3sov_A LRP-6, low-density lipo 96.6 0.81 2.8E-05 49.7 27.1 232 36-344 5-246 (318)
280 3p5b_L Low density lipoprotein 96.5 1.5 5.1E-05 49.4 33.2 240 35-345 83-329 (400)
281 3v64_C Agrin; beta propeller, 96.5 1.1 3.6E-05 49.6 28.1 194 133-377 73-273 (349)
282 1ijq_A LDL receptor, low-densi 96.5 1.4 4.6E-05 47.9 28.6 222 90-377 3-236 (316)
283 2xe4_A Oligopeptidase B; hydro 96.4 0.13 4.3E-06 63.8 21.9 200 130-377 170-396 (751)
284 4hw6_A Hypothetical protein, I 96.4 0.92 3.1E-05 51.8 27.5 117 258-377 274-431 (433)
285 3s94_A LRP-6, low-density lipo 96.2 3.3 0.00011 49.5 45.5 171 3-211 17-201 (619)
286 3sov_A LRP-6, low-density lipo 96.1 0.98 3.3E-05 49.1 24.6 224 89-377 5-236 (318)
287 3p5b_L Low density lipoprotein 96.1 2.4 8.2E-05 47.7 28.5 222 89-377 84-318 (400)
288 2xe4_A Oligopeptidase B; hydro 96.0 0.35 1.2E-05 59.8 22.7 113 254-378 170-303 (751)
289 3m0c_C LDL receptor, low-densi 95.8 4.5 0.00015 49.7 31.1 237 36-343 396-639 (791)
290 2xzh_A Clathrin heavy chain 1; 95.8 2.6 8.8E-05 45.1 32.5 264 3-379 48-332 (365)
291 2vpj_A Kelch-like protein 12; 95.6 0.8 2.8E-05 49.1 21.2 103 267-378 159-277 (301)
292 3amr_A 3-phytase; beta-propell 95.5 3.2 0.00011 45.1 24.7 205 89-343 42-271 (355)
293 3ii7_A Kelch-like protein 7; p 95.4 0.86 2.9E-05 49.0 20.5 101 89-211 13-126 (306)
294 3tc9_A Hypothetical hydrolase; 95.4 3.7 0.00013 46.6 26.5 154 19-211 138-300 (430)
295 2xn4_A Kelch-like protein 2; s 95.4 1.1 3.6E-05 48.2 20.9 104 267-379 155-276 (302)
296 2xzh_A Clathrin heavy chain 1; 95.3 3.9 0.00013 43.8 32.1 211 97-379 49-290 (365)
297 3pbp_A Nucleoporin NUP82; beta 95.3 0.53 1.8E-05 52.3 17.7 117 35-166 32-158 (452)
298 4asc_A Kelch repeat and BTB do 95.3 0.9 3.1E-05 49.2 20.1 94 267-369 148-253 (315)
299 4hw6_A Hypothetical protein, I 95.1 2.7 9.1E-05 47.9 24.0 156 20-211 141-303 (433)
300 3ii7_A Kelch-like protein 7; p 94.7 2.8 9.5E-05 44.9 22.0 106 36-171 13-132 (306)
301 1bpo_A Protein (clathrin); cla 94.4 7.9 0.00027 43.1 34.7 264 3-379 47-331 (494)
302 3kya_A Putative phosphatase; s 94.4 9.3 0.00032 43.8 27.2 239 89-379 153-475 (496)
303 2p9w_A MAL S 1 allergenic prot 94.3 1.1 3.9E-05 48.2 17.0 113 258-378 64-214 (334)
304 2woz_A Kelch repeat and BTB do 94.3 2.7 9.2E-05 45.4 20.9 94 267-369 158-263 (318)
305 1n7d_A LDL receptor, low-densi 94.3 0.06 2.1E-06 65.9 8.0 239 36-345 378-623 (699)
306 2xn4_A Kelch-like protein 2; s 93.9 4.8 0.00017 42.8 21.7 64 267-338 204-277 (302)
307 1bpo_A Protein (clathrin); cla 93.9 10 0.00034 42.3 26.6 215 4-288 86-332 (494)
308 3m0c_C LDL receptor, low-densi 93.9 16 0.00056 44.7 29.4 183 155-380 402-590 (791)
309 4asc_A Kelch repeat and BTB do 93.8 4.9 0.00017 43.1 21.7 53 267-327 196-253 (315)
310 2vpj_A Kelch-like protein 12; 93.5 7.1 0.00024 41.4 22.1 62 267-336 206-277 (301)
311 1zgk_A Kelch-like ECH-associat 93.4 4.4 0.00015 43.4 20.1 62 146-211 121-192 (308)
312 2p9w_A MAL S 1 allergenic prot 93.3 10 0.00035 40.8 24.2 154 22-211 17-214 (334)
313 2woz_A Kelch repeat and BTB do 93.0 11 0.00039 40.3 24.3 62 146-211 109-183 (318)
314 2ism_A Putative oxidoreductase 93.0 13 0.00043 40.8 24.4 72 67-167 32-115 (352)
315 1zgk_A Kelch-like ECH-associat 92.8 2.8 9.7E-05 44.9 17.5 103 267-378 168-286 (308)
316 4a0p_A LRP6, LRP-6, low-densit 92.6 21 0.00073 42.5 55.1 232 36-344 7-245 (628)
317 2uvk_A YJHT; unknown function, 91.6 8.5 0.00029 42.0 20.0 42 279-328 286-327 (357)
318 2ism_A Putative oxidoreductase 91.1 20 0.00069 39.1 27.9 27 133-163 31-57 (352)
319 1xi4_A Clathrin heavy chain; a 90.9 12 0.0004 48.3 21.4 115 3-154 47-169 (1630)
320 3kya_A Putative phosphatase; s 90.8 27 0.00092 40.0 25.1 161 20-211 141-340 (496)
321 3pbp_A Nucleoporin NUP82; beta 90.5 8.7 0.0003 42.8 17.7 106 89-211 33-157 (452)
322 1n7d_A LDL receptor, low-densi 90.3 0.68 2.3E-05 56.5 9.9 194 133-377 406-612 (699)
323 3s94_A LRP-6, low-density lipo 88.5 46 0.0016 39.5 50.0 225 89-378 10-242 (619)
324 3a9g_A Putative uncharacterize 88.1 34 0.0011 37.4 29.6 31 133-168 29-59 (354)
325 1tl2_A L10, protein (tachylect 86.7 7.8 0.00027 39.0 12.8 163 421-610 42-207 (236)
326 2uvk_A YJHT; unknown function, 85.7 15 0.0005 40.1 16.4 25 146-170 65-99 (357)
327 1suu_A DNA gyrase subunit A; t 84.9 45 0.0015 35.6 24.2 219 357-611 5-231 (312)
328 2g8s_A Glucose/sorbosone dehyd 84.0 53 0.0018 35.7 24.5 30 133-165 18-47 (353)
329 1tl2_A L10, protein (tachylect 82.5 26 0.00087 35.3 14.4 155 257-445 41-206 (236)
330 3sre_A PON1, serum paraoxonase 79.3 76 0.0026 34.5 26.7 109 248-369 155-287 (355)
331 3sre_A PON1, serum paraoxonase 77.7 85 0.0029 34.1 31.6 179 42-277 81-287 (355)
332 1xi4_A Clathrin heavy chain; a 76.6 38 0.0013 43.7 16.5 173 4-211 86-288 (1630)
333 3das_A Putative oxidoreductase 74.6 1E+02 0.0034 33.4 25.8 113 253-367 199-326 (347)
334 4a0p_A LRP6, LRP-6, low-densit 74.0 1.5E+02 0.0051 35.1 59.7 223 89-377 7-235 (628)
335 3l6v_A GYRA, DNA gyrase subuni 72.8 1.1E+02 0.0039 33.3 26.5 219 356-611 3-265 (370)
336 3no0_A DNA gyrase subunit A; D 72.3 97 0.0033 32.2 23.4 164 428-611 33-196 (276)
337 3das_A Putative oxidoreductase 67.1 1.4E+02 0.0049 32.2 27.2 37 130-169 29-65 (347)
338 3uc1_A DNA gyrase subunit A; D 65.0 1.5E+02 0.0052 31.7 24.8 169 427-611 50-228 (327)
339 2g8s_A Glucose/sorbosone dehyd 63.5 1.7E+02 0.0057 31.6 26.4 69 306-377 268-350 (353)
340 1wp5_A Topoisomerase IV; broke 62.9 1.6E+02 0.0056 31.3 26.3 213 358-611 3-225 (323)
341 3a9g_A Putative uncharacterize 62.4 1.7E+02 0.0059 31.5 26.2 51 19-76 30-83 (354)
342 1cru_A Protein (soluble quinop 61.6 2.1E+02 0.0072 32.1 30.1 109 255-369 25-164 (454)
343 3ott_A Two-component system se 60.4 2.8E+02 0.0097 33.3 60.5 457 18-612 63-546 (758)
344 1zi0_A DNA gyrase subunit A; b 60.2 1.7E+02 0.006 30.8 27.6 172 424-611 47-226 (307)
345 2zwa_A Leucine carboxyl methyl 58.2 1.4E+02 0.0046 35.9 16.2 63 146-211 451-521 (695)
346 1cru_A Protein (soluble quinop 56.6 2.5E+02 0.0086 31.5 18.7 61 67-154 28-98 (454)
347 2zwa_A Leucine carboxyl methyl 55.6 1.3E+02 0.0043 36.2 15.3 108 266-379 499-635 (695)
348 1suu_A DNA gyrase subunit A; t 46.0 2.9E+02 0.0099 29.1 28.2 207 265-503 5-231 (312)
349 3ott_A Two-component system se 45.8 4.6E+02 0.016 31.4 57.7 327 6-446 84-445 (758)
350 3sbq_A Nitrous-oxide reductase 44.0 1.6E+02 0.0056 33.9 12.3 116 67-201 324-454 (638)
351 2be1_A Serine/threonine-protei 43.0 82 0.0028 34.0 9.6 65 147-211 10-75 (339)
352 4gq2_M Nucleoporin NUP120; bet 41.7 4.4E+02 0.015 32.8 17.4 130 537-673 128-268 (950)
353 3b7f_A Glycosyl hydrolase, BNR 40.7 3.8E+02 0.013 29.0 25.5 63 310-372 116-201 (394)
354 3qhy_B Beta-lactamase inhibito 36.9 3.7E+02 0.013 27.7 18.9 219 67-378 25-245 (282)
355 2be1_A Serine/threonine-protei 36.7 1.1E+02 0.0037 33.0 9.3 119 36-176 11-140 (339)
356 4gq2_M Nucleoporin NUP120; bet 34.2 3.2E+02 0.011 34.0 14.5 39 133-174 236-274 (950)
357 3sbq_A Nitrous-oxide reductase 33.4 2.3E+02 0.008 32.7 11.4 71 133-211 323-407 (638)
358 2ns5_A Partitioning-defective 31.6 23 0.00079 29.4 2.2 35 1021-1055 4-54 (85)
359 3kci_A Probable E3 ubiquitin-p 31.2 5.3E+02 0.018 27.8 32.7 255 89-378 64-344 (389)
360 2wg3_C Hedgehog-interacting pr 30.2 6.2E+02 0.021 28.3 25.9 30 133-165 14-44 (463)
361 3b7f_A Glycosyl hydrolase, BNR 27.9 5.9E+02 0.02 27.3 15.4 35 421-458 116-153 (394)
362 3no0_A DNA gyrase subunit A; D 25.6 5.6E+02 0.019 26.3 21.4 118 256-378 67-195 (276)
363 2wg3_C Hedgehog-interacting pr 23.6 5.5E+02 0.019 28.7 12.7 53 20-76 16-79 (463)
364 3q6k_A 43.2 kDa salivary prote 23.0 7.5E+02 0.026 26.8 23.3 161 158-337 124-306 (381)
365 1zi0_A DNA gyrase subunit A; b 21.9 6.9E+02 0.024 26.0 28.5 170 257-449 95-277 (307)
366 3uc1_A DNA gyrase subunit A; D 20.2 7.8E+02 0.027 25.9 30.4 166 430-611 109-279 (327)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.1e-54 Score=528.10 Aligned_cols=559 Identities=17% Similarity=0.274 Sum_probs=441.8
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.++|+||+|+ || +++||+|+ |++|+||| .++++++++.+|.+ .|.+++|+ ||++ .+++++
T Consensus 15 H~~~V~~~a~s--pd----g~~las~~~d~~v~iWd-~~~~~~~~l~gh~~-~V~~l~fs-------pdg~---~las~~ 76 (577)
T 2ymu_A 15 HSSSVRGVAFS--PD----GQTIASASDDKTVKLWN-RNGQLLQTLTGHSS-SVWGVAFS-------PDGQ---TIASAS 76 (577)
T ss_dssp CSSCEEEEEEC--TT----SSCEEEEETTSEEEEEC-TTSCEEEEEECCSS-CEEEEEEC-------TTSS---EEEEEE
T ss_pred CCCcEEEEEEC--CC----CCEEEEEeCCCEEEEEE-CCCCEEEEEeCCCC-CEEEEEEC-------CCCC---EEEEEe
Confidence 67899999999 99 99999988 69999999 47899999999776 79999999 8873 444445
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.|++|+|||+. .+.+..+.+|.+.|.+++|+| ++++|++++.|+.+++|+...... ....
T Consensus 77 ~d~~i~vWd~~----------------~~~~~~~~~~~~~v~~~~~s~---d~~~l~~~~~d~~~~~~~~~~~~~-~~~~ 136 (577)
T 2ymu_A 77 DDKTVKLWNRN----------------GQLLQTLTGHSSSVRGVAFSP---DGQTIASASDDKTVKLWNRNGQLL-QTLT 136 (577)
T ss_dssp TTSCEEEEETT----------------SCEEEEECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEETTCCEE-EEEC
T ss_pred CCCEEEEEECC----------------CCEEEEEECCCCCEEEEEECC---CCCEEEEEcCCCceeeccccccee-eecc
Confidence 69999999965 356788899999999999999 999999999999999999765443 3333
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
.+. ..++.+.+ .+++..+++++.++.+++|+.. .........
T Consensus 137 ~~~-~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~ 178 (577)
T 2ymu_A 137 GHS-SSVWGVAF---SPDGQTIASASDDKTVKLWNRN----------------------------------GQLLQTLTG 178 (577)
T ss_dssp CCS-SCEEEEEE---CTTSSCEEEEETTSEEEEECTT----------------------------------SCEEEEEEC
T ss_pred CCC-Cceeeeee---ecCCccceecccccceeccccc----------------------------------eeeeeeccC
Confidence 332 33445554 6788899999999999999865 344556778
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEE
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRV 332 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~v 332 (1088)
|...|.++.|+|+++++++++.|+.|++||... +.+. .+.+|...|.+++|+ +.+|++++.|+.|++
T Consensus 179 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~---------~~~~--~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~ 247 (577)
T 2ymu_A 179 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---------QLLQ--TLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 247 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEECTTS---------CEEE--EEECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred CCcceeeeeecCCCCEEEEEcCCCEEEEEeCCC---------cEEE--EEecCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 999999999999999999999999999999654 3333 778999999999998 578999999999999
Q ss_pred EcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccce
Q 001391 333 WGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQI 412 (1088)
Q Consensus 333 Wd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (1088)
|+.+++.+..+.+|.. +|.+++|+|++++|++++.|+.|++|+..++.++
T Consensus 248 w~~~~~~~~~~~~~~~-~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~----------------------------- 297 (577)
T 2ymu_A 248 WNRNGQLLQTLTGHSS-SVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQ----------------------------- 297 (577)
T ss_dssp ECTTSCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE-----------------------------
T ss_pred EeCCCCEEEEEecCCC-CEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEE-----------------------------
Confidence 9999999999999988 7999999999999999999999999997543222
Q ss_pred eeccCCCCceEEEEeccCCeEEE-EecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEec
Q 001391 413 RLTDSKSEYVRCLHLTSEDTLYI-ATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGD 491 (1088)
Q Consensus 413 ~~~~~~~~~V~~l~~s~~~~ll~-~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~ 491 (1088)
.+.+|...|.+++|+|++.+++ ++.++.+..|++. .... ....++ ..++.++++.++ +..+++|+
T Consensus 298 -~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~---~~~~-~~~~~~-~~~v~~~~~s~~--------g~~l~~~~ 363 (577)
T 2ymu_A 298 -TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN---GQHL-QTLTGH-SSSVWGVAFSPD--------GQTIASAS 363 (577)
T ss_dssp -EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT---SCEE-EEECCC-SSCEEEEEECTT--------SSEEEEEE
T ss_pred -EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC---CCee-EEEeCC-CCCEEEEEECCC--------CCEEEEEe
Confidence 2334567899999999986554 5677888865542 2221 222333 567888888554 48999999
Q ss_pred CCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceee
Q 001391 492 GKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFL 571 (1088)
Q Consensus 492 ~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l 571 (1088)
.||.|++|+... .... ... .+...+.. .+++|++++|++++.|+.|++|+.... +
T Consensus 364 ~dg~v~~~~~~~-~~~~----~~~---~~~~~v~~--~~~s~dg~~l~~~~~d~~v~~~~~~~~---------------~ 418 (577)
T 2ymu_A 364 DDKTVKLWNRNG-QLLQ----TLT---GHSSSVRG--VAFSPDGQTIASASDDKTVKLWNRNGQ---------------L 418 (577)
T ss_dssp TTSEEEEEETTC-CEEE----EEE---CCSSCEEE--EEECTTSSCEEEEETTSEEEEECTTCC---------------E
T ss_pred CCCEEEEEcCCC-CEEE----Eec---CCCCCeEE--EEECCCCCEEEEEeCCCEEEEEeCCCC---------------E
Confidence 999999999543 2111 111 22223333 468999999999999999999996421 1
Q ss_pred eeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeecccccccceeEEEEEeccCC
Q 001391 572 VAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSN 651 (1088)
Q Consensus 572 ~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~ 651 (1088)
... ..+|...|++++|+||+++|++++.|++|++|+.+.. ....+.+|. ..|++++|+ ++
T Consensus 419 ~~~-~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~--------------~~~~~~~~~--~~v~~~~~s---pd 478 (577)
T 2ymu_A 419 LQT-LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ--------------LLQTLTGHS--SSVRGVAFS---PD 478 (577)
T ss_dssp EEE-EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC--------------EEEEEECCS--SCEEEEEEC---TT
T ss_pred EEE-ecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC--------------EEEEEcCCC--CCEEEEEEc---CC
Confidence 122 2368999999999999999999999999999997532 123344454 579999998 67
Q ss_pred ceEEEEecCCCeEEEEEeecCCcceeeecceeeeeeeeEEEeecCCCccCcccceEEEeeecccEEEEeCCcceEEEEEe
Q 001391 652 QTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIP 731 (1088)
Q Consensus 652 ~~~l~t~g~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~~~~~~~~~~~Gf~~~~~~iwn~~~~~~~~~~~ 731 (1088)
+.+|++++.|+.|++|+.+.. .++
T Consensus 479 ~~~las~~~d~~i~iw~~~~~----------~~~---------------------------------------------- 502 (577)
T 2ymu_A 479 GQTIASASDDKTVKLWNRNGQ----------LLQ---------------------------------------------- 502 (577)
T ss_dssp SCEEEEEETTSEEEEEETTSC----------EEE----------------------------------------------
T ss_pred CCEEEEEeCCCEEEEEcCCCC----------EEE----------------------------------------------
Confidence 899999999999999984210 000
Q ss_pred eCCcCcccccccCCcCCcceEEEEEeccEEEEEeeecccCCCcccccccccccCcceEEEEEEeccccccccccccccCC
Q 001391 732 CGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALN 811 (1088)
Q Consensus 732 cGg~~r~~~~~~~~~~~~~~~f~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~Hg~eI~~v~~~~~~~~~~~~~~~~~~~ 811 (1088)
...+|...|++|+|+++
T Consensus 503 -------------------------------------------------~~~~h~~~v~~l~~s~d-------------- 519 (577)
T 2ymu_A 503 -------------------------------------------------TLTGHSSSVRGVAFSPD-------------- 519 (577)
T ss_dssp -------------------------------------------------EEECCSSCEEEEEECTT--------------
T ss_pred -------------------------------------------------EEeCCCCCEEEEEEcCC--------------
Confidence 00167889999999965
Q ss_pred CceEEEeccCCceEEEEEecCCCcccccccccccccCCceeeeEEEeeeeeeccccccCccccccccCccccCCCCcEEE
Q 001391 812 KSSWIATGCEDGTVRLTRYSPGFENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLL 891 (1088)
Q Consensus 812 ~~~~i~TG~eD~tIrl~~~~~~~~~~~~~~~~~~H~~gs~v~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 891 (1088)
+++||||++|++||||+++. ....++.+|. ..|++++|. .|+.+|
T Consensus 520 -g~~l~s~~~dg~v~lwd~~~-----~~~~~~~~h~--~~v~~~~fs---------------------------~dg~~l 564 (577)
T 2ymu_A 520 -GQTIASASDDKTVKLWNRNG-----QLLQTLTGHS--SSVWGVAFS---------------------------PDGQTI 564 (577)
T ss_dssp -SSCEEEEETTSEEEEECTTS-----CEEEEEECCS--SCEEEEEEC---------------------------TTSSCE
T ss_pred -CCEEEEEECcCEEEEEeCCC-----CEEEEEcCCC--CCEEEEEEc---------------------------CCCCEE
Confidence 68999999999999999642 4567889999 999999993 234567
Q ss_pred EEecceeEEEEEE
Q 001391 892 ISVGAKRVLTSWL 904 (1088)
Q Consensus 892 ~s~g~d~~i~~W~ 904 (1088)
+|+|.|++|++|.
T Consensus 565 ~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 565 ASASSDKTVKLWN 577 (577)
T ss_dssp EEEETTSCEEEEC
T ss_pred EEEeCCCEEEEeC
Confidence 8999999999993
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.7e-53 Score=522.68 Aligned_cols=586 Identities=13% Similarity=0.118 Sum_probs=437.1
Q ss_pred EEecCCCceeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccce
Q 001391 8 EWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRV 87 (1088)
Q Consensus 8 iWdl~~g~~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~ 87 (1088)
+|-.....+.+.+.+|+|+ || +++||++.++.|+|||+.+++.+..+.+|.. .|.+++|+ |+|
T Consensus 9 ~~~~~~~~~~g~~~~~~~s--pd----g~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~-~v~~~~~s-------pdg--- 71 (611)
T 1nr0_A 9 LFPSLPRTARGTAVVLGNT--PA----GDKIQYCNGTSVYTVPVGSLTDTEIYTEHSH-QTTVAKTS-------PSG--- 71 (611)
T ss_dssp EECCCCCCCTTCCCCCEEC--TT----SSEEEEEETTEEEEEETTCSSCCEEECCCSS-CEEEEEEC-------TTS---
T ss_pred EECCCCCcccCceeEEeeC--CC----CCEEEeCCCCEEEEecCCCcccCeEecCCCC-ceEEEEEC-------CCC---
Confidence 3333333356788999999 99 9999999999999999999999999998777 69999999 888
Q ss_pred eeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcC----CcEEEE
Q 001391 88 TFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD----NSIRVW 162 (1088)
Q Consensus 88 ~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~D----g~V~iW 162 (1088)
.+|+++ .|++|+|||+.... ......+.+|.+.|.+++|+| ++++|++++.+ +.|++|
T Consensus 72 -~~lasg~~d~~v~lWd~~~~~-------------~~~~~~~~~~~~~v~~v~fs~---dg~~l~~~~~~~~~~~~v~~w 134 (611)
T 1nr0_A 72 -YYCASGDVHGNVRIWDTTQTT-------------HILKTTIPVFSGPVKDISWDS---ESKRIAAVGEGRERFGHVFLF 134 (611)
T ss_dssp -SEEEEEETTSEEEEEESSSTT-------------CCEEEEEECSSSCEEEEEECT---TSCEEEEEECCSSCSEEEEET
T ss_pred -cEEEEEeCCCCEEEeECCCCc-------------ceeeEeecccCCceEEEEECC---CCCEEEEEECCCCceeEEEEe
Confidence 556555 59999999987432 344567789999999999999 99999998865 367777
Q ss_pred EcCCCceEEEeccCCceeEEEEeeecCCCCCc-EEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecc
Q 001391 163 DISNSSIILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1088)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~-~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 241 (1088)
| .++....+.+|.. .+.+++| +|++. .|++|+.|++|++||..
T Consensus 135 d--~~~~~~~l~gh~~-~v~~v~f---~p~~~~~l~s~s~D~~v~lwd~~------------------------------ 178 (611)
T 1nr0_A 135 D--TGTSNGNLTGQAR-AMNSVDF---KPSRPFRIISGSDDNTVAIFEGP------------------------------ 178 (611)
T ss_dssp T--TCCBCBCCCCCSS-CEEEEEE---CSSSSCEEEEEETTSCEEEEETT------------------------------
T ss_pred e--CCCCcceecCCCC-CceEEEE---CCCCCeEEEEEeCCCeEEEEECC------------------------------
Confidence 6 4555555665544 4677777 56665 69999999999999987
Q ss_pred cccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeec--eeeeccCcceEEEEEC--
Q 001391 242 QQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNARVWDCCLT-- 317 (1088)
Q Consensus 242 ~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~--~~~~~h~~~I~~v~~~-- 317 (1088)
..+....+.+|.+.|.+++|+|++++|++++.|++|++||+.+++. ...+.. ....+|...|.+++|+
T Consensus 179 ---~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~-----~~~~~~~~~~~~~h~~~V~~v~~spd 250 (611)
T 1nr0_A 179 ---PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK-----TGVFEDDSLKNVAHSGSVFGLTWSPD 250 (611)
T ss_dssp ---TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----EEECBCTTSSSCSSSSCEEEEEECTT
T ss_pred ---CCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE-----eeeeccccccccccCCCEEEEEECCC
Confidence 6677888999999999999999999999999999999999987543 111100 0112899999999998
Q ss_pred CCEEEEEeCCCcEEEEcC-CCceeEEEcccCC--CCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCcccccc
Q 001391 318 DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIG--RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEF 394 (1088)
Q Consensus 318 ~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~--~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 394 (1088)
+.+|++++.|++|++||+ +++.+..+..+.. ..+..+.+ ++..+++++.|+.+++|+.....
T Consensus 251 g~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~------------- 315 (611)
T 1nr0_A 251 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELGS------------- 315 (611)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTE-------------
T ss_pred CCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCC-------------
Confidence 679999999999999999 6788777754321 13556666 67789999999999999984320
Q ss_pred CCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEE-EecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecC
Q 001391 395 NGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI-ATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLL 473 (1088)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~-~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 473 (1088)
....+.+|...|++++|+|++++++ ++.++.+..|++.. ..........+...+.++++.
T Consensus 316 ----------------~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~---~~~~~~~~~~h~~~v~~~~~s 376 (611)
T 1nr0_A 316 ----------------IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST---GISNRVFPDVHATMITGIKTT 376 (611)
T ss_dssp ----------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---CCEEECSSCSCSSCEEEEEEC
T ss_pred ----------------cceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC---CceeeecccCCcceEEEEEEC
Confidence 1223346778899999999986554 56788888665543 332233323346678888775
Q ss_pred CCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecC
Q 001391 474 SNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLC 553 (1088)
Q Consensus 474 ~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~ 553 (1088)
+. ..+++++.|+.+++|++................ .... ..+++++++.++++ .++.+++|+..
T Consensus 377 ~~---------~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~----~~~~--~~~~s~dg~~~~~~-~~~~v~~~~~~ 440 (611)
T 1nr0_A 377 SK---------GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLS----SQPL--GLAVSADGDIAVAA-CYKHIAIYSHG 440 (611)
T ss_dssp TT---------SCEEEEETTTEEEEECSSSSSSCTTSCCEEECS----SCEE--EEEECTTSSCEEEE-ESSEEEEEETT
T ss_pred CC---------CcEEEEEcCCceEEeecCCccccccceeeeecC----CCCc--EEEEeCCCcEEEEE-eCceEEEEeCC
Confidence 32 578899999999999987654332111111111 1122 24678999887776 56789999822
Q ss_pred CCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeecc
Q 001391 554 DPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKG 633 (1088)
Q Consensus 554 ~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g 633 (1088)
. ... ..|...+.+++|+|||++||+|+.|++|++|++.... +..... .+
T Consensus 441 ----------------~-~~~--~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~-----------~~~~~~-~~ 489 (611)
T 1nr0_A 441 ----------------K-LTE--VPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS-----------VSEVKT-IV 489 (611)
T ss_dssp ----------------E-EEE--EECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE-----------EEEEEE-EE
T ss_pred ----------------c-eee--eecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCc-----------eeeeec-cC
Confidence 0 111 1367789999999999999999999999999987531 111122 33
Q ss_pred cccccceeEEEEEeccCCceEEEEecCCCeEEEEEeecCCcceeeecceeeeeeeeEEEeecCCCccCcccceEEEeeec
Q 001391 634 AHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFAS 713 (1088)
Q Consensus 634 ~hg~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~~~~~~~~~~~Gf~~ 713 (1088)
|. ..|++|+|+ +++.+|++++.|++|++|++..... .. .
T Consensus 490 h~--~~v~~v~fs---pdg~~las~s~d~~v~~w~~~~~~~---~~-----~---------------------------- 528 (611)
T 1nr0_A 490 HP--AEITSVAFS---NNGAFLVATDQSRKVIPYSVANNFE---LA-----H---------------------------- 528 (611)
T ss_dssp CS--SCEEEEEEC---TTSSEEEEEETTSCEEEEEGGGTTE---ES-----C----------------------------
T ss_pred CC--CceEEEEEC---CCCCEEEEEcCCCCEEEEEcCCCCc---ee-----e----------------------------
Confidence 44 579999999 7889999999999999999854210 00 0
Q ss_pred ccEEEEeCCcceEEEEEeeCCcCcccccccCCcCCcceEEEEEeccEEEEEeeecccCCCcccccccccccCcceEEEEE
Q 001391 714 TDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLC 793 (1088)
Q Consensus 714 ~~~~iwn~~~~~~~~~~~cGg~~r~~~~~~~~~~~~~~~f~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~Hg~eI~~v~ 793 (1088)
....++|...|++|+
T Consensus 529 -----------------------------------------------------------------~~~~~~H~~~V~~v~ 543 (611)
T 1nr0_A 529 -----------------------------------------------------------------TNSWTFHTAKVACVS 543 (611)
T ss_dssp -----------------------------------------------------------------CCCCCCCSSCEEEEE
T ss_pred -----------------------------------------------------------------eeeeeecccceeEEE
Confidence 001135899999999
Q ss_pred EeccccccccccccccCCCceEEEeccCCceEEEEEecCCCcccccccccccc-cCCceeeeEEEeeeeeeccccccCcc
Q 001391 794 FVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGFENWSSSKLLGEH-VGGSAVRSICFVSEINQISAVVDNVS 872 (1088)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~i~TG~eD~tIrl~~~~~~~~~~~~~~~~~~H-~~gs~v~~~~f~~~~~~~~~~~~~~~ 872 (1088)
|+|+ +++|||||.|++||||++....+ .....+.+| . ..|++++|.+
T Consensus 544 fspd---------------g~~lasgs~D~~v~lW~~~~~~~--~~~~~~~~h~~--~~v~~v~fs~------------- 591 (611)
T 1nr0_A 544 WSPD---------------NVRLATGSLDNSVIVWNMNKPSD--HPIIIKGAHAM--SSVNSVIWLN------------- 591 (611)
T ss_dssp ECTT---------------SSEEEEEETTSCEEEEETTCTTS--CCEEETTSSTT--SCEEEEEEEE-------------
T ss_pred ECCC---------------CCEEEEEECCCcEEEEECCCccc--ccchhhccCcc--cCeeEEEEcC-------------
Confidence 9966 78999999999999999975322 112568899 8 8999999941
Q ss_pred ccccccCccccCCCCcEEEEEecceeEEEEEEE
Q 001391 873 EEINRQNGVAEDKENPFLLISVGAKRVLTSWLL 905 (1088)
Q Consensus 873 ~~~~~~~~~~~~~~~~~ll~s~g~d~~i~~W~~ 905 (1088)
+.. |+|+|.|++|++|.+
T Consensus 592 --------------d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 592 --------------ETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp --------------TTE-EEEEETTSCEEEEEC
T ss_pred --------------CCE-EEEecCCCCEEEEec
Confidence 244 999999999999986
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=9.6e-53 Score=517.84 Aligned_cols=506 Identities=15% Similarity=0.145 Sum_probs=380.0
Q ss_pred CCCceEEecCCCc-------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC--eeEEEEeeeCCcceEEEE
Q 001391 3 KKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG--TLIRPFQVFHGIRLHGIS 72 (1088)
Q Consensus 3 d~~i~iWdl~~g~-------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg--~~~~~~~~~~~~~V~~i~ 72 (1088)
+++|++|++.+++ |.++|++++|+ |+ +++||+|+ |++|+|||+.++ .....+..|.+ .|.+++
T Consensus 38 ~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~s--pd----g~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~-~v~~v~ 110 (611)
T 1nr0_A 38 GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTS--PS----GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG-PVKDIS 110 (611)
T ss_dssp TTEEEEEETTCSSCCEEECCCSSCEEEEEEC--TT----SSEEEEEETTSEEEEEESSSTTCCEEEEEECSSS-CEEEEE
T ss_pred CCEEEEecCCCcccCeEecCCCCceEEEEEC--CC----CcEEEEEeCCCCEEEeECCCCcceeeEeecccCC-ceEEEE
Confidence 4679999998765 67889999999 99 99999998 799999999754 34556777666 799999
Q ss_pred ecccccccCCCccceeeEEEEEC-C----CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCC
Q 001391 73 CNFINCTEGSVSTRVTFEVALFG-E----KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN 147 (1088)
Q Consensus 73 ~s~~~~~~~~d~~~~~~~la~~g-d----~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~ 147 (1088)
|+ |++ ..|++.+ + +.|++||.. +....+.+|.+.|++++|+| ++
T Consensus 111 fs-------~dg----~~l~~~~~~~~~~~~v~~wd~~-----------------~~~~~l~gh~~~v~~v~f~p---~~ 159 (611)
T 1nr0_A 111 WD-------SES----KRIAAVGEGRERFGHVFLFDTG-----------------TSNGNLTGQARAMNSVDFKP---SR 159 (611)
T ss_dssp EC-------TTS----CEEEEEECCSSCSEEEEETTTC-----------------CBCBCCCCCSSCEEEEEECS---SS
T ss_pred EC-------CCC----CEEEEEECCCCceeEEEEeeCC-----------------CCcceecCCCCCceEEEECC---CC
Confidence 99 887 4555544 3 367777632 34456789999999999999 87
Q ss_pred C-EEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCcc
Q 001391 148 R-SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (1088)
Q Consensus 148 ~-~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s 226 (1088)
. .|++|+.|++|++||..+++....+..|.. .+++++| +|++.+|++|+.|++|++||+.
T Consensus 160 ~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~-~V~~v~f---spdg~~las~s~D~~i~lwd~~--------------- 220 (611)
T 1nr0_A 160 PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK-FVHSVRY---NPDGSLFASTGGDGTIVLYNGV--------------- 220 (611)
T ss_dssp SCEEEEEETTSCEEEEETTTBEEEEEECCCSS-CEEEEEE---CTTSSEEEEEETTSCEEEEETT---------------
T ss_pred CeEEEEEeCCCeEEEEECCCCeEeeeeccccC-ceEEEEE---CCCCCEEEEEECCCcEEEEECC---------------
Confidence 6 699999999999999999888888877654 4677777 6889999999999999999987
Q ss_pred CCCCCCCCceeEecccccceeeeEEEe-------CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceee
Q 001391 227 AHGSSSDFKCFKLQDQQHTAVNLFRLV-------GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEV 299 (1088)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i 299 (1088)
+++.+..+. +|.+.|.+++|+|++++|++++.|++|++||+.+++. ...+
T Consensus 221 ------------------~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~-----~~~~ 277 (611)
T 1nr0_A 221 ------------------DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV-----EKTI 277 (611)
T ss_dssp ------------------TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----EEEE
T ss_pred ------------------CCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce-----eeee
Confidence 444555553 7999999999999999999999999999999988643 1111
Q ss_pred eceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 300 GSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 300 ~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
. ....+...+..+.|.+..+++++.|+++++|+. .++....+.+|.. .|++++|+|++++|++++.|++|++||+.
T Consensus 278 ~--~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~-~v~~l~~spdg~~l~s~s~D~~v~~Wd~~ 354 (611)
T 1nr0_A 278 P--VGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNK-AITALSSSADGKTLFSADAEGHINSWDIS 354 (611)
T ss_dssp E--CCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred c--CCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCC-CEEEEEEeCCCCEEEEEeCCCcEEEEECC
Confidence 1 112344567788888899999999999999999 6677788899988 79999999999999999999999999995
Q ss_pred CCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEe
Q 001391 379 AFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKI 458 (1088)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~ 458 (1088)
...... .....|...|.+++|++++.++.++.++.+..|++.......- ..
T Consensus 355 ~~~~~~----------------------------~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~-~~ 405 (611)
T 1nr0_A 355 TGISNR----------------------------VFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSS-KA 405 (611)
T ss_dssp TCCEEE----------------------------CSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTT-SC
T ss_pred CCceee----------------------------ecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcccccc-ce
Confidence 421100 0012456789999999999999999999888655433211000 00
Q ss_pred eeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEE
Q 001391 459 LQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFI 538 (1088)
Q Consensus 459 ~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L 538 (1088)
..........++++.+ ++..++++ .++.+++|+ .+. .. .. . +...+. ..+++|+|++|
T Consensus 406 ~~~~~~~~~~~~~~s~--------dg~~~~~~-~~~~v~~~~--~~~-~~----~~--~--~~~~v~--~va~spdg~~l 463 (611)
T 1nr0_A 406 VANKLSSQPLGLAVSA--------DGDIAVAA-CYKHIAIYS--HGK-LT----EV--P--ISYNSS--CVALSNDKQFV 463 (611)
T ss_dssp CEEECSSCEEEEEECT--------TSSCEEEE-ESSEEEEEE--TTE-EE----EE--E--CSSCEE--EEEECTTSCEE
T ss_pred eeeecCCCCcEEEEeC--------CCcEEEEE-eCceEEEEe--CCc-ee----ee--e--cCCCce--EEEEeCCCCEE
Confidence 0001112344555533 33556655 467899997 221 10 11 1 111122 25799999999
Q ss_pred EEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccc
Q 001391 539 FTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKS 618 (1088)
Q Consensus 539 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~ 618 (1088)
++|+.|+.|++||+.... +..... .+|...|++++|||||++||+|+.|++|++|++.+...
T Consensus 464 asgs~D~~v~lwd~~~~~------------~~~~~~--~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~---- 525 (611)
T 1nr0_A 464 AVGGQDSKVHVYKLSGAS------------VSEVKT--IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE---- 525 (611)
T ss_dssp EEEETTSEEEEEEEETTE------------EEEEEE--EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE----
T ss_pred EEeCCCCeEEEEEccCCc------------eeeeec--cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCc----
Confidence 999999999999987431 111112 46899999999999999999999999999999875211
Q ss_pred cccccccCcceeecccccccceeEEEEEeccCCceEEEEecCCCeEEEEEeec
Q 001391 619 VALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDK 671 (1088)
Q Consensus 619 ~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~~~ 671 (1088)
+... ...+.|. ..|++|+|+ +++.+|+|++.|++|++|+++.
T Consensus 526 ------~~~~-~~~~~H~-~~V~~v~fs---pdg~~lasgs~D~~v~lW~~~~ 567 (611)
T 1nr0_A 526 ------LAHT-NSWTFHT-AKVACVSWS---PDNVRLATGSLDNSVIVWNMNK 567 (611)
T ss_dssp ------ESCC-CCCCCCS-SCEEEEEEC---TTSSEEEEEETTSCEEEEETTC
T ss_pred ------eeee-eeeeecc-cceeEEEEC---CCCCEEEEEECCCcEEEEECCC
Confidence 1000 0123243 589999999 7889999999999999999865
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8.8e-51 Score=497.52 Aligned_cols=492 Identities=17% Similarity=0.276 Sum_probs=390.9
Q ss_pred CCCCCceEEecCCCc-------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEE
Q 001391 1 MGKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~-------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~ 72 (1088)
+.|++|+|||. +++ |.++|++|+|+ || +++|++|+ |++|+|||. +++++..+..|.. .|.+++
T Consensus 35 ~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fs--pd----g~~las~~~d~~i~vWd~-~~~~~~~~~~~~~-~v~~~~ 105 (577)
T 2ymu_A 35 SDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFS--PD----GQTIASASDDKTVKLWNR-NGQLLQTLTGHSS-SVRGVA 105 (577)
T ss_dssp ETTSEEEEECT-TSCEEEEEECCSSCEEEEEEC--TT----SSEEEEEETTSCEEEEET-TSCEEEEECCCSS-CEEEEE
T ss_pred eCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEEC--CC----CCEEEEEeCCCEEEEEEC-CCCEEEEEECCCC-CEEEEE
Confidence 46899999996 444 67899999999 99 89999988 799999995 6788999998776 799999
Q ss_pred ecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEE
Q 001391 73 CNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (1088)
Q Consensus 73 ~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~las 152 (1088)
|+ |+++ .+++++.|+.+++|+.. ........+|...|.++.++| ++..+++
T Consensus 106 ~s-------~d~~---~l~~~~~d~~~~~~~~~----------------~~~~~~~~~~~~~v~~~~~~~---~~~~~~~ 156 (577)
T 2ymu_A 106 FS-------PDGQ---TIASASDDKTVKLWNRN----------------GQLLQTLTGHSSSVWGVAFSP---DGQTIAS 156 (577)
T ss_dssp EC-------TTSS---EEEEEETTSCEEEEETT----------------CCEEEEECCCSSCEEEEEECT---TSSCEEE
T ss_pred EC-------CCCC---EEEEEcCCCceeecccc----------------cceeeeccCCCCceeeeeeec---CCcccee
Confidence 99 7773 55555669999999976 244566778999999999999 9999999
Q ss_pred EEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCC
Q 001391 153 GCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (1088)
Q Consensus 153 gs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~ 232 (1088)
++.++.+++|+..... ......+. ..++.+.+ ++++.+|++++.|+.|++||..
T Consensus 157 ~~~~~~~~~~~~~~~~-~~~~~~~~-~~v~~~~~---~~~~~~l~~~~~d~~v~~w~~~--------------------- 210 (577)
T 2ymu_A 157 ASDDKTVKLWNRNGQL-LQTLTGHS-SSVWGVAF---SPDGQTIASASDDKTVKLWNRN--------------------- 210 (577)
T ss_dssp EETTSEEEEECTTSCE-EEEEECCS-SCEEEEEE---CTTSSCEEEEETTSEEEEECTT---------------------
T ss_pred cccccceeccccceee-eeeccCCC-cceeeeee---cCCCCEEEEEcCCCEEEEEeCC---------------------
Confidence 9999999999965443 33333333 33455555 6889999999999999999964
Q ss_pred CCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceE
Q 001391 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312 (1088)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~ 312 (1088)
++.+..+.+|...|.+++|+|++++|++++.|+.|++||... +.+. .+.+|...|.
T Consensus 211 -------------~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~---------~~~~--~~~~~~~~v~ 266 (577)
T 2ymu_A 211 -------------GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---------QLLQ--TLTGHSSSVN 266 (577)
T ss_dssp -------------SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS---------CEEE--EECCCSSCEE
T ss_pred -------------CcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC---------CEEE--EEecCCCCEE
Confidence 456778899999999999999999999999999999999654 3343 7789999999
Q ss_pred EEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCcc
Q 001391 313 DCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPE 390 (1088)
Q Consensus 313 ~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~ 390 (1088)
+++|+ +..+++++.|+++++|+.+++.+..+.+|.. .|++++|+|++++|++++.|+.|++|+..+..+.
T Consensus 267 ~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~------- 338 (577)
T 2ymu_A 267 GVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS-SVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ------- 338 (577)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE-------
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCC-CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeE-------
Confidence 99998 5799999999999999999999999999998 7999999999999999999999999998643221
Q ss_pred ccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEE-EecCCeEEEEEeccCCcceeEEeeeecCCcceEE
Q 001391 391 AKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI-ATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIIC 469 (1088)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~-~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~ 469 (1088)
.+..+...+.+++|+|++.+++ ++.+|.+..|+. .. +.......+ ..++.+
T Consensus 339 -----------------------~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~---~~-~~~~~~~~~-~~~v~~ 390 (577)
T 2ymu_A 339 -----------------------TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR---NG-QLLQTLTGH-SSSVRG 390 (577)
T ss_dssp -----------------------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET---TC-CEEEEEECC-SSCEEE
T ss_pred -----------------------EEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC---CC-CEEEEecCC-CCCeEE
Confidence 2234556799999999986655 566777775542 22 212233333 567888
Q ss_pred EecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEE
Q 001391 470 MDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKL 549 (1088)
Q Consensus 470 l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~v 549 (1088)
+++.++ ++++++++.|+.|++|+... +... .. ..+...+.. .+++|++++|++++.|+.|++
T Consensus 391 ~~~s~d--------g~~l~~~~~d~~v~~~~~~~-~~~~----~~---~~~~~~v~~--~~~s~d~~~l~~~~~d~~v~~ 452 (577)
T 2ymu_A 391 VAFSPD--------GQTIASASDDKTVKLWNRNG-QLLQ----TL---TGHSSSVWG--VAFSPDDQTIASASDDKTVKL 452 (577)
T ss_dssp EEECTT--------SSCEEEEETTSEEEEECTTC-CEEE----EE---ECCSSCEEE--EEECTTSSEEEEEETTSEEEE
T ss_pred EEECCC--------CCEEEEEeCCCEEEEEeCCC-CEEE----Ee---cCCCCCeEE--EEECCCCCEEEEEcCCCEEEE
Confidence 888554 48999999999999998532 2111 11 122223333 468999999999999999999
Q ss_pred EecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcce
Q 001391 550 WQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLN 629 (1088)
Q Consensus 550 wd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~ 629 (1088)
|++... +... ..+|...|++++|+|++++||+|+.|++|+||+.+.. ...
T Consensus 453 w~~~~~---------------~~~~-~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~--------------~~~ 502 (577)
T 2ymu_A 453 WNRNGQ---------------LLQT-LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--------------LLQ 502 (577)
T ss_dssp EETTSC---------------EEEE-EECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSC--------------EEE
T ss_pred EECCCC---------------EEEE-EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCC--------------EEE
Confidence 996522 1122 2378999999999999999999999999999996531 133
Q ss_pred eecccccccceeEEEEEeccCCceEEEEecCCCeEEEEEe
Q 001391 630 YFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEY 669 (1088)
Q Consensus 630 ~~~g~hg~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~ 669 (1088)
.+.+|. ..|++|+|+ +++.+|++++.||.|++|++
T Consensus 503 ~~~~h~--~~v~~l~~s---~dg~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 503 TLTGHS--SSVRGVAFS---PDGQTIASASDDKTVKLWNR 537 (577)
T ss_dssp EEECCS--SCEEEEEEC---TTSSCEEEEETTSEEEEECT
T ss_pred EEeCCC--CCEEEEEEc---CCCCEEEEEECcCEEEEEeC
Confidence 455555 579999998 67789999999999999985
No 5
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.3e-48 Score=476.98 Aligned_cols=581 Identities=13% Similarity=0.122 Sum_probs=448.2
Q ss_pred eEEecCCCceeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCC----eeEEEEeeeCCcc-eEEEEecccccccC
Q 001391 7 SEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG----TLIRPFQVFHGIR-LHGISCNFINCTEG 81 (1088)
Q Consensus 7 ~iWdl~~g~~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg----~~~~~~~~~~~~~-V~~i~~s~~~~~~~ 81 (1088)
.+|......|.+.|++++|+ |+ +++|+++.++.|+|||+.++ +.+..+.+|.. . |.+++|+
T Consensus 8 ~~~~~~~~~~~~~v~~~~~s--pd----g~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~-~~v~~~~~s------- 73 (615)
T 1pgu_A 8 EIIPPQPSTQRNFTTHLSYD--PT----TNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS-SVVTTVKFS------- 73 (615)
T ss_dssp EEECCCCCCCTTCCCCCEEE--TT----TTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTT-SCEEEEEEC-------
T ss_pred hccCCCCCCccCceeEEEEC--CC----CCEEEEecCCeEEEEECCCCCCccccceEEecCCC-ceEEEEEEC-------
Confidence 44555555578899999999 99 89999999999999999999 89999998776 7 9999999
Q ss_pred C--CccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcC---
Q 001391 82 S--VSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD--- 156 (1088)
Q Consensus 82 ~--d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~D--- 156 (1088)
| +++ .+++++.|++|+||++..... ......+....+.+|...|.+++|+| ++++|++++.+
T Consensus 74 p~~~~~---~l~s~~~dg~v~vw~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~~~~~ 140 (615)
T 1pgu_A 74 PIKGSQ---YLCSGDESGKVIVWGWTFDKE-------SNSVEVNVKSEFQVLAGPISDISWDF---EGRRLCVVGEGRDN 140 (615)
T ss_dssp SSTTCC---EEEEEETTSEEEEEEEEEEGG-------GTEEEEEEEEEEECCSSCEEEEEECT---TSSEEEEEECCSSC
T ss_pred cCCCCC---EEEEecCCCEEEEEeCCCCcc-------cccccccccchhhcccccEEEEEEeC---CCCEEEEeccCCCC
Confidence 7 772 444445599999999964310 00001466778889999999999999 99999999987
Q ss_pred -CcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCc-EEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCC
Q 001391 157 -NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF 234 (1088)
Q Consensus 157 -g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~-~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~ 234 (1088)
+.|++|| .++.+..+..+.. .+.++.+ ++++. ++++++.|+.|++||+.
T Consensus 141 ~~~v~~~d--~~~~~~~~~~~~~-~v~~~~~---~~~~~~~l~~~~~d~~v~vwd~~----------------------- 191 (615)
T 1pgu_A 141 FGVFISWD--SGNSLGEVSGHSQ-RINACHL---KQSRPMRSMTVGDDGSVVFYQGP----------------------- 191 (615)
T ss_dssp SEEEEETT--TCCEEEECCSCSS-CEEEEEE---CSSSSCEEEEEETTTEEEEEETT-----------------------
T ss_pred ccEEEEEE--CCCcceeeecCCc-cEEEEEE---CCCCCcEEEEEeCCCcEEEEeCC-----------------------
Confidence 6788887 6667777766544 4667776 56676 89999999999999998
Q ss_pred ceeEecccccceeeeEEEeCCCC---CEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceee-e---c
Q 001391 235 KCFKLQDQQHTAVNLFRLVGHEG---SIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL-Y---G 306 (1088)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~gh~~---~V~~v~~sp~-g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~-~---~ 306 (1088)
..+.+..+.+|.. .|.+++|+|+ ++++++++.|+.|++||+.+++ .+. .+ . +
T Consensus 192 ----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--------~~~--~~~~~~~~ 251 (615)
T 1pgu_A 192 ----------PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE--------FLK--YIEDDQEP 251 (615)
T ss_dssp ----------TBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC--------EEE--ECCBTTBC
T ss_pred ----------CcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC--------EeE--Eecccccc
Confidence 7788888999999 9999999999 9999999999999999998853 332 34 4 8
Q ss_pred cCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEcccC---CCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCC
Q 001391 307 HNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHI---GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFL 381 (1088)
Q Consensus 307 h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~---~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~ 381 (1088)
|...|.+++|+ +.+|++++.|+.|++||+ +++.+..+..+. ...+.++.+. ++.++++++.||.|++||+...
T Consensus 252 ~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~- 329 (615)
T 1pgu_A 252 VQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHD- 329 (615)
T ss_dssp CCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEE-
T ss_pred cCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCC-
Confidence 99999999996 789999999999999999 688888887762 1258888886 8899999999999999998531
Q ss_pred CCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeee
Q 001391 382 PGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQV 461 (1088)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~ 461 (1088)
..+..+..|...|++++| |+ +++++.+|.+. +|+.. .+. .
T Consensus 330 ----------------------------~~~~~~~~~~~~v~~~~~-~~--l~~~~~dg~i~---~w~~~-----~~~-~ 369 (615)
T 1pgu_A 330 ----------------------------EVLKTISGHNKGITALTV-NP--LISGSYDGRIM---EWSSS-----SMH-Q 369 (615)
T ss_dssp ----------------------------EEEEEECCCSSCEEEEET-TT--TEEEETTSCEE---ETTTT-----EEE-C
T ss_pred ----------------------------cEEEEEeCCCCCEEEEEe-cC--cEEECCCCeEE---EEEch-----hhc-C
Confidence 112234456678999999 87 88889999988 55544 122 4
Q ss_pred cCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEE
Q 001391 462 SEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTA 541 (1088)
Q Consensus 462 ~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~ 541 (1088)
.+...+.++++ + .++.+++++.|+.+++|++....... ... ..++++++.+++++
T Consensus 370 ~~~~~v~~~~~-~--------~~~~l~~~~~d~~i~~~~~~~~~~~~--------------~~~--~~~~s~~~~~~~~~ 424 (615)
T 1pgu_A 370 DHSNLIVSLDN-S--------KAQEYSSISWDDTLKVNGITKHEFGS--------------QPK--VASANNDGFTAVLT 424 (615)
T ss_dssp CCCSCEEEEEC-C--------STTCCEEEETTTEEEETTEEEEECSS--------------CEE--EEEECSSSEEEEEE
T ss_pred cccCceEEEEE-C--------CCcEEEEEeCCCCEEEEEcccCcccC--------------Cce--EEEEcCCCCEEEEe
Confidence 44678888887 2 23689999999999999987654321 111 24688999998887
Q ss_pred CCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcC-CCcEEEEeCCcccccccccc
Q 001391 542 DPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDL-RGNLVLFPLLRDLLNDKSVA 620 (1088)
Q Consensus 542 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~-dg~I~Iw~~~~~~~~~~~~~ 620 (1088)
.++.+++|++.... ....+ .|...+++++|+ +++|++|+. ||.|++|++.....
T Consensus 425 -~~~~~~~~~~~~~~--------------~~~~~--~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~------ 479 (615)
T 1pgu_A 425 -NDDDLLILQSFTGD--------------IIKSV--RLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEV------ 479 (615)
T ss_dssp -TTSEEEEEETTTCC--------------EEEEE--ECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEE------
T ss_pred -CCCceEEEeccCCc--------------eeeec--ccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccc------
Confidence 78899999986442 11222 367889999999 899999999 99999999986421
Q ss_pred cccccCcceeecccccccceeEEEEEeccCCceEEEEecCCCeEEEEEeecCCcceeeecceeeeeeeeEEEeecCCCcc
Q 001391 621 LHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSI 700 (1088)
Q Consensus 621 ~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~~ 700 (1088)
.. ..+.+|. ..|++++|+ +++.+|++++.||.|++|++..... +.
T Consensus 480 -----~~-~~~~~~~--~~v~~~~~s---~~g~~l~~~~~dg~i~iw~~~~~~~---------~~--------------- 524 (615)
T 1pgu_A 480 -----SF-DLKTPLR--AKPSYISIS---PSETYIAAGDVMGKILLYDLQSREV---------KT--------------- 524 (615)
T ss_dssp -----EE-ECSSCCS--SCEEEEEEC---TTSSEEEEEETTSCEEEEETTTTEE---------EE---------------
T ss_pred -----cc-cccCCcc--CceEEEEEC---CCCCEEEEcCCCCeEEEeeCCCCcc---------ee---------------
Confidence 11 2333343 579999998 6789999999999999999864310 00
Q ss_pred CcccceEEEeeecccEEEEeCCcceEEEEEeeCCcCcccccccCCcCCcceEEEEEeccEEEEEeeecccCCCccccccc
Q 001391 701 DLASCNYAAGFASTDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNL 780 (1088)
Q Consensus 701 ~~~~~~~~~Gf~~~~~~iwn~~~~~~~~~~~cGg~~r~~~~~~~~~~~~~~~f~~~k~~~i~~~~~~~~~~~~~~~~~~~ 780 (1088)
.
T Consensus 525 ------------------------------------------------------------------------------~- 525 (615)
T 1pgu_A 525 ------------------------------------------------------------------------------S- 525 (615)
T ss_dssp ------------------------------------------------------------------------------C-
T ss_pred ------------------------------------------------------------------------------E-
Confidence 0
Q ss_pred ccccCcceEEEEEEeccccccccccccccCCCceEEEeccCCceEEEEEecCCCcccccccccccccCCceeeeEEEeee
Q 001391 781 HMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGFENWSSSKLLGEHVGGSAVRSICFVSE 860 (1088)
Q Consensus 781 ~~~~Hg~eI~~v~~~~~~~~~~~~~~~~~~~~~~~i~TG~eD~tIrl~~~~~~~~~~~~~~~~~~H~~gs~v~~~~f~~~ 860 (1088)
..+.|...|++++|++...... ....++++||||++|++|+||++.... .....+.+|. ..|++++|.+
T Consensus 526 ~~~~h~~~v~~~~~sp~~~~~~-----~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~h~--~~v~~l~~s~- 594 (615)
T 1pgu_A 526 RWAFRTSKINAISWKPAEKGAN-----EEEIEEDLVATGSLDTNIFIYSVKRPM---KIIKALNAHK--DGVNNLLWET- 594 (615)
T ss_dssp CSCCCSSCEEEEEECCCC-----------CCSCCEEEEEETTSCEEEEESSCTT---CCEEETTSST--TCEEEEEEEE-
T ss_pred eecCCCCceeEEEEcCcccccc-----ccccCCCEEEEEcCCCcEEEEECCCCc---eechhhhcCc--cceEEEEEcC-
Confidence 0113889999999986100000 000137899999999999999997632 3567789999 9999999951
Q ss_pred eeeccccccCccccccccCccccCCCCcEEEEEecceeEEEEEEEEe
Q 001391 861 INQISAVVDNVSEEINRQNGVAEDKENPFLLISVGAKRVLTSWLLRH 907 (1088)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~s~g~d~~i~~W~~~~ 907 (1088)
++. |+|+|.|+.|++|.++.
T Consensus 595 --------------------------~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 595 --------------------------PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp --------------------------TTE-EEEEETTSCEEEEEEC-
T ss_pred --------------------------CCC-eEEecCCceEEEEeeec
Confidence 345 99999999999999864
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.1e-46 Score=499.37 Aligned_cols=629 Identities=14% Similarity=0.197 Sum_probs=454.5
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.+.|++++|+ |+ +++|++|+ |++|+|||+.+++.+..+..|.+ .|.+++|+ |+++ .+++++
T Consensus 614 h~~~v~~~~~s--~~----~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~-~v~~~~~s-------~~~~---~l~s~~ 676 (1249)
T 3sfz_A 614 HTDAVYHACFS--QD----GQRIASCGADKTLQVFKAETGEKLLDIKAHED-EVLCCAFS-------SDDS---YIATCS 676 (1249)
T ss_dssp CSSCEEEEEEC--TT----SSEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEEC-------TTSS---EEEEEE
T ss_pred ccccEEEEEEC--CC----CCEEEEEeCCCeEEEEECCCCCEEEEeccCCC-CEEEEEEe-------cCCC---EEEEEe
Confidence 67899999999 99 89999988 79999999999999999998776 79999999 7773 455555
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.|++|+|||+.. .+.+..+.+|...|.+++|+| +.++.++++|+.|+.|++||+.+++.+..+.
T Consensus 677 ~d~~v~vwd~~~---------------~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~ 740 (1249)
T 3sfz_A 677 ADKKVKIWDSAT---------------GKLVHTYDEHSEQVNCCHFTN-KSNHLLLATGSNDFFLKLWDLNQKECRNTMF 740 (1249)
T ss_dssp TTSEEEEEETTT---------------CCEEEEEECCSSCEEEEEECS-SSSCCEEEEEETTSCEEEEETTSSSEEEEEC
T ss_pred CCCeEEEEECCC---------------CceEEEEcCCCCcEEEEEEec-CCCceEEEEEeCCCeEEEEECCCcchhheec
Confidence 699999999985 457788889999999999999 2234589999999999999999999998887
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
.+.. .+.++++ ++++..+++|+.||.|++||+.+.+..... ..... ..........
T Consensus 741 ~h~~-~v~~~~~---sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~------------------~~~~~--~~~~~~~~~~ 796 (1249)
T 3sfz_A 741 GHTN-SVNHCRF---SPDDELLASCSADGTLRLWDVRSANERKSI------------------NVKRF--FLSSEDPPED 796 (1249)
T ss_dssp CCSS-CEEEEEE---CSSTTEEEEEESSSEEEEEEGGGTEEEEEE------------------ECCCC--C--------C
T ss_pred CCCC-CEEEEEE---ecCCCEEEEEECCCeEEEEeCCCCccccee------------------ccccc--ccccCCcccc
Confidence 7655 3566666 678999999999999999999822111000 00000 0000001123
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEE
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRV 332 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~v 332 (1088)
+...+.+++|+|+++.+++++ ++.+.+||+.++. .+. ....+|...|.+++|+ +.++++++.||.|++
T Consensus 797 ~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~--------~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~v 866 (1249)
T 3sfz_A 797 VEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSG--------LLA-EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL 866 (1249)
T ss_dssp CCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCC--------EEE-EEECSSSSCCCEEEECSSTTEEEEECSSSCEEE
T ss_pred ccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCC--------cee-EEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEE
Confidence 345788999999999999987 6899999998853 232 1445899999999998 689999999999999
Q ss_pred EcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccc
Q 001391 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQ 411 (1088)
Q Consensus 333 Wd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (1088)
|++ ++..+..+.+|.+ .|++++|+|++++|++++.||.|++|++......... ..
T Consensus 867 wd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~-------------~~---------- 922 (1249)
T 3sfz_A 867 WNIDSRLKVADCRGHLS-WVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAI-------------VL---------- 922 (1249)
T ss_dssp EETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSS-------------SE----------
T ss_pred EEcCCCceeeecCCCcc-ceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeee-------------cc----------
Confidence 999 7888899999998 7999999999999999999999999998431100000 00
Q ss_pred eeeccCCCCceEEEEeccCCeEEEE-ecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEe
Q 001391 412 IRLTDSKSEYVRCLHLTSEDTLYIA-TNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALG 490 (1088)
Q Consensus 412 ~~~~~~~~~~V~~l~~s~~~~ll~~-t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g 490 (1088)
.......+.+++..++. ...+.+..+. ...... .......+.++++.+. ++++++|
T Consensus 923 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~i~~~~~sp~--------g~~l~~g 979 (1249)
T 3sfz_A 923 --------KQEIDVVFQENETMVLAVDNIRGLQLIA---GKTGQI----DYLPEAQVSCCCLSPH--------LEYVAFG 979 (1249)
T ss_dssp --------EEEEEEEEETTEEEEEEEESSSSEEEEE---ESSCCE----EEECCSCEEEEEECTT--------SSEEEEE
T ss_pred --------cceeeEEEcCCCcEEEEecCCcceEEEe---cCcceE----EEcccCcEEEEEEcCC--------CCEEEEE
Confidence 01122333333333332 3333333222 112111 1112456778877554 4899999
Q ss_pred cCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCccccee
Q 001391 491 DGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVF 570 (1088)
Q Consensus 491 ~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 570 (1088)
+.+|.|++|++.++..... ...+...+.. .++++++++|++++.||.|++|++....
T Consensus 980 ~~~g~i~i~d~~~~~~~~~-------~~~h~~~v~~--l~~s~dg~~l~s~~~dg~i~vwd~~~~~-------------- 1036 (1249)
T 3sfz_A 980 DEDGAIKIIELPNNRVFSS-------GVGHKKAVRH--IQFTADGKTLISSSEDSVIQVWNWQTGD-------------- 1036 (1249)
T ss_dssp ETTSCCEEEETTTTSCEEE-------CCCCSSCCCC--EEECSSSSCEEEECSSSBEEEEETTTTE--------------
T ss_pred cCCCCEEEEEcCCCceeee-------cccCCCceEE--EEECCCCCEEEEEcCCCEEEEEECCCCc--------------
Confidence 9999999999987653221 1122222333 4689999999999999999999998542
Q ss_pred eeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeecccccccceeEEEEEeccC
Q 001391 571 LVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRS 650 (1088)
Q Consensus 571 l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~ 650 (1088)
.. ....|...|.+++++|++ .+++++.||+|++||+.++. ....+.+|. ..|++++|+ +
T Consensus 1037 ~~--~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~-------------~~~~~~~~~--~~v~~~~~s---~ 1095 (1249)
T 3sfz_A 1037 YV--FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGR-------------IERDFTCHQ--GTVLSCAIS---S 1095 (1249)
T ss_dssp EE--CCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTC-------------CCEEEECCS--SCCCCEEEC---S
T ss_pred eE--EEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCc-------------eeEEEcccC--CcEEEEEEC---C
Confidence 11 133688999999999966 56789999999999998642 233455555 479999998 6
Q ss_pred CceEEEEecCCCeEEEEEeecCCcceeeecceeeeeeeeEEEeecCCCccCcccceEEEeeecccEEEEeCCcceEEEEE
Q 001391 651 NQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQI 730 (1088)
Q Consensus 651 ~~~~l~t~g~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~~~~~~~~~~~Gf~~~~~~iwn~~~~~~~~~~ 730 (1088)
++.+|++++.||+|++|++..+.....+.. + ...+..+.+.+ ++.+++.|..++.+.+||..+...+...
T Consensus 1096 d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~----h-~~~v~~~~~s~-----dg~~lat~~~dg~i~vwd~~~~~~~~~~ 1165 (1249)
T 3sfz_A 1096 DATKFSSTSADKTAKIWSFDLLSPLHELKG----H-NGCVRCSAFSL-----DGILLATGDDNGEIRIWNVSDGQLLHSC 1165 (1249)
T ss_dssp SSSSCEEECCSSCCCEECSSSSSCSBCCCC----C-SSCEEEEEECS-----SSSEEEEEETTSCCCEEESSSSCCCCCC
T ss_pred CCCEEEEEcCCCcEEEEECCCcceeeeecc----C-CCcEEEEEECC-----CCCEEEEEeCCCEEEEEECCCCceEEEe
Confidence 778899999999999999976543222111 1 23455555542 4667889999999999998664421110
Q ss_pred eeCCcCcccccccCCcCCcceEEEEEeccEEEEEeeecccCCCcccccccccccCcceEEEEEEeccccccccccccccC
Q 001391 731 PCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSAL 810 (1088)
Q Consensus 731 ~cGg~~r~~~~~~~~~~~~~~~f~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~Hg~eI~~v~~~~~~~~~~~~~~~~~~ 810 (1088)
. ++ ........|...|++++|+++
T Consensus 1166 ~------~~-------------------------------------~~~~~~~~~~~~v~~l~fs~d------------- 1189 (1249)
T 3sfz_A 1166 A------PI-------------------------------------SVEEGTATHGGWVTDVCFSPD------------- 1189 (1249)
T ss_dssp C------CC-------------------------------------C-------CCSCCCEEEECTT-------------
T ss_pred c------cc-------------------------------------cccccccccCceEEEEEECCC-------------
Confidence 0 00 001112478999999999965
Q ss_pred CCceEEEeccCCceEEEEEecCCCcccccccccccccCCceeeeEEEeeeeeeccccccCccccccccCccccCCCCcEE
Q 001391 811 NKSSWIATGCEDGTVRLTRYSPGFENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFL 890 (1088)
Q Consensus 811 ~~~~~i~TG~eD~tIrl~~~~~~~~~~~~~~~~~~H~~gs~v~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 890 (1088)
+.+|++++ |+|++|++..+ .....+..|. ..|+++.|. .++.+
T Consensus 1190 --g~~l~s~~--g~v~vwd~~~g----~~~~~~~~~~--~~i~~~~~s---------------------------~dg~~ 1232 (1249)
T 3sfz_A 1190 --SKTLVSAG--GYLKWWNVATG----DSSQTFYTNG--TNLKKIHVS---------------------------PDFRT 1232 (1249)
T ss_dssp --SSCEEEES--SSEEEBCSSSC----BCCCCCCCSS--CCCCCCEEC---------------------------SSSCC
T ss_pred --CCEEEECC--CeEEEEECCCC----ceeeeeeccC--CcccEEEEC---------------------------CCCCE
Confidence 67888886 89999999763 3466778888 889999983 34567
Q ss_pred EEEecceeEEEEEEE
Q 001391 891 LISVGAKRVLTSWLL 905 (1088)
Q Consensus 891 l~s~g~d~~i~~W~~ 905 (1088)
|++++.|+.|.+|.+
T Consensus 1233 l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1233 YVTVDNLGILYILQV 1247 (1249)
T ss_dssp EEEECTTCCEEEECC
T ss_pred EEEecCCcEEEEEee
Confidence 899999999999976
No 7
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=9.2e-46 Score=456.17 Aligned_cols=487 Identities=13% Similarity=0.140 Sum_probs=379.4
Q ss_pred CCCceEEecCCC----c-------eeee-eEEEEEeccC--CCCCCCCEEEEEe-CCeEEEEECCCC--------eeEEE
Q 001391 3 KKDLSEWRLDVG----Q-------YLGE-ISALCFVHLP--SHLSSLPFLLAGS-GSQVLLYDLEAG--------TLIRP 59 (1088)
Q Consensus 3 d~~i~iWdl~~g----~-------~~~~-V~~v~fs~~p--d~~~~~~~laag~-d~~I~vwd~~tg--------~~~~~ 59 (1088)
|+.|++||+.++ + |.++ |++++|+ | + +++|++|+ |+.|+|||+.++ +.+..
T Consensus 38 ~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~s--p~~~----~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~ 111 (615)
T 1pgu_A 38 GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFS--PIKG----SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSE 111 (615)
T ss_dssp TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEEC--SSTT----CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEE
T ss_pred CCeEEEEECCCCCCccccceEEecCCCceEEEEEEC--cCCC----CCEEEEecCCCEEEEEeCCCCcccccccccccch
Confidence 678999999988 4 6678 9999999 9 9 89999988 799999999855 67777
Q ss_pred EeeeCCcceEEEEecccccccCCCccceeeEEEEECC----CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcE
Q 001391 60 FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE----KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWV 135 (1088)
Q Consensus 60 ~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd----~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I 135 (1088)
+..|.. .|.+++|+ |+++ .+++++.+ +.|.+|+. .+.+..+.+|...|
T Consensus 112 ~~~~~~-~v~~~~~s-------~~~~---~l~~~~~~~~~~~~v~~~d~-----------------~~~~~~~~~~~~~v 163 (615)
T 1pgu_A 112 FQVLAG-PISDISWD-------FEGR---RLCVVGEGRDNFGVFISWDS-----------------GNSLGEVSGHSQRI 163 (615)
T ss_dssp EECCSS-CEEEEEEC-------TTSS---EEEEEECCSSCSEEEEETTT-----------------CCEEEECCSCSSCE
T ss_pred hhcccc-cEEEEEEe-------CCCC---EEEEeccCCCCccEEEEEEC-----------------CCcceeeecCCccE
Confidence 777665 79999999 7773 44444444 57888872 24667788999999
Q ss_pred EEEEEecccCCCC-EEEEEEcCCcEEEEEcCCCceEEEeccCCce--eEEEEeeecCCCC-CcEEEEEecCCeEEEEEec
Q 001391 136 FDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERC--LLYSMKLWGDNLE-ALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 136 ~~v~f~p~~~d~~-~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~--~~~s~~~~~~s~~-~~~l~sg~~dg~I~vwd~~ 211 (1088)
.+++|+| +++ ++++++.|+.|++||+.+++.+..+..+... .+.++++ +++ +.+|++++.||.|++||+.
T Consensus 164 ~~~~~~~---~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~l~~~~~dg~i~vwd~~ 237 (615)
T 1pgu_A 164 NACHLKQ---SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEF---SPDSGEFVITVGSDRKISCFDGK 237 (615)
T ss_dssp EEEEECS---SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEE---CSTTCCEEEEEETTCCEEEEETT
T ss_pred EEEEECC---CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEE---CCCCCCEEEEEeCCCeEEEEECC
Confidence 9999999 887 8999999999999999999998888766541 4667776 678 8999999999999999998
Q ss_pred cCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE-e---CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001391 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-V---GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (1088)
Q Consensus 212 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~---gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~ 287 (1088)
+++.+..+ . +|...|.+++|+ +++++++++.|+.|++||+.+
T Consensus 238 ---------------------------------~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~ 283 (615)
T 1pgu_A 238 ---------------------------------SGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTT 283 (615)
T ss_dssp ---------------------------------TCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTT
T ss_pred ---------------------------------CCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCC
Confidence 66677777 5 899999999999 999999999999999999988
Q ss_pred CcccCCCCceeeeceeeecc----CcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC
Q 001391 288 EYWKDSDSIEEVGSSVLYGH----NARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS 361 (1088)
Q Consensus 288 ~~~~~~~~~~~i~~~~~~~h----~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~ 361 (1088)
++ .+. .+..+ ...+.++.+. +.++++++.||.|++||+ .++.+..+.+|.. +|.+++| |+
T Consensus 284 ~~--------~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~-~v~~~~~-~~-- 349 (615)
T 1pgu_A 284 SK--------CVQ--KWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNK-GITALTV-NP-- 349 (615)
T ss_dssp TE--------EEE--EEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSS-CEEEEET-TT--
T ss_pred Cc--------EEE--EEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCC-CEEEEEe-cC--
Confidence 53 332 33333 4678888886 899999999999999999 6788889999998 7999999 88
Q ss_pred EEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCe
Q 001391 362 LLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGY 441 (1088)
Q Consensus 362 ~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~ 441 (1088)
|++++.||.|++|++. . +. ..|...|.+++|.+++.+++++.++.
T Consensus 350 -l~~~~~dg~i~~w~~~--~------------------------------~~--~~~~~~v~~~~~~~~~~l~~~~~d~~ 394 (615)
T 1pgu_A 350 -LISGSYDGRIMEWSSS--S------------------------------MH--QDHSNLIVSLDNSKAQEYSSISWDDT 394 (615)
T ss_dssp -TEEEETTSCEEETTTT--E------------------------------EE--CCCCSCEEEEECCSTTCCEEEETTTE
T ss_pred -cEEECCCCeEEEEEch--h------------------------------hc--CcccCceEEEEECCCcEEEEEeCCCC
Confidence 9999999999999884 0 11 23556899999966778888889998
Q ss_pred EEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeecccc
Q 001391 442 LYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIE 521 (1088)
Q Consensus 442 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~ 521 (1088)
+. +|+...... .....++++.++ +.+++++ .++.+.+|++.+++..... . ..
T Consensus 395 i~---~~~~~~~~~--------~~~~~~~~~s~~--------~~~~~~~-~~~~~~~~~~~~~~~~~~~------~--~~ 446 (615)
T 1pgu_A 395 LK---VNGITKHEF--------GSQPKVASANND--------GFTAVLT-NDDDLLILQSFTGDIIKSV------R--LN 446 (615)
T ss_dssp EE---ETTEEEEEC--------SSCEEEEEECSS--------SEEEEEE-TTSEEEEEETTTCCEEEEE------E--CS
T ss_pred EE---EEEcccCcc--------cCCceEEEEcCC--------CCEEEEe-CCCceEEEeccCCceeeec------c--cC
Confidence 88 444332211 114555666443 3666666 7889999998665432211 1 11
Q ss_pred ceeeeEEEeecCCCeEEEEECC-CCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcC
Q 001391 522 RQLLGTYWCKSLGHRFIFTADP-KGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDL 600 (1088)
Q Consensus 522 ~~~~~~~~~~s~dg~~L~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~ 600 (1088)
..+.. .+++ +++|++++. |+.|++||+.... +.......|...|++++|+|++++|++|+.
T Consensus 447 ~~~~~--~~~~--~~~l~~~~~~d~~i~~~~~~~~~--------------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 508 (615)
T 1pgu_A 447 SPGSA--VSLS--QNYVAVGLEEGNTIQVFKLSDLE--------------VSFDLKTPLRAKPSYISISPSETYIAAGDV 508 (615)
T ss_dssp SCEEE--EEEC--SSEEEEEETTTSCEEEEETTEEE--------------EEEECSSCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCceE--EEEc--CCEEEEeecCCCeEEEEECCCcc--------------ccccccCCccCceEEEEECCCCCEEEEcCC
Confidence 11222 3445 889999999 9999999997431 110113468999999999999999999999
Q ss_pred CCcEEEEeCCcccccccccccccccCcceeecccccccceeEEEEEecc-------CCceEEEEecCCCeEEEEEeecC
Q 001391 601 RGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLR-------SNQTEIRSTGGDGCICYLEYDKD 672 (1088)
Q Consensus 601 dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~-------~~~~~l~t~g~Dg~i~iw~~~~~ 672 (1088)
||.|++|++.+... ...+.+.|. ..|++++|++.. .++.+|++++.||.|++|+++..
T Consensus 509 dg~i~iw~~~~~~~-------------~~~~~~~h~-~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 509 MGKILLYDLQSREV-------------KTSRWAFRT-SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp TSCEEEEETTTTEE-------------EECCSCCCS-SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred CCeEEEeeCCCCcc-------------eeEeecCCC-CceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence 99999999986421 233444244 689999999310 07789999999999999998653
No 8
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7.2e-46 Score=495.83 Aligned_cols=509 Identities=16% Similarity=0.214 Sum_probs=389.7
Q ss_pred CCCCCceEEecCCCc-------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEE
Q 001391 1 MGKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~-------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~ 72 (1088)
+.||+|++||+.+++ |.++|++++|+ |+ +++|++|+ |++|+|||+.+++++..+..|.. .|.+++
T Consensus 634 ~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s--~~----~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-~v~~~~ 706 (1249)
T 3sfz_A 634 GADKTLQVFKAETGEKLLDIKAHEDEVLCCAFS--SD----DSYIATCSADKKVKIWDSATGKLVHTYDEHSE-QVNCCH 706 (1249)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC--TT----SSEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEE
T ss_pred eCCCeEEEEECCCCCEEEEeccCCCCEEEEEEe--cC----CCEEEEEeCCCeEEEEECCCCceEEEEcCCCC-cEEEEE
Confidence 468999999999987 67889999999 99 89999988 79999999999999999998766 799999
Q ss_pred ecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEE
Q 001391 73 CNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1088)
Q Consensus 73 ~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la 151 (1088)
|+|. .++ .++++ +.|+.|++||+.. .+....+.+|.+.|.+++|+| ++++|+
T Consensus 707 ~~~~-----~~~----~~l~sg~~d~~v~vwd~~~---------------~~~~~~~~~h~~~v~~~~~sp---~~~~l~ 759 (1249)
T 3sfz_A 707 FTNK-----SNH----LLLATGSNDFFLKLWDLNQ---------------KECRNTMFGHTNSVNHCRFSP---DDELLA 759 (1249)
T ss_dssp ECSS-----SSC----CEEEEEETTSCEEEEETTS---------------SSEEEEECCCSSCEEEEEECS---STTEEE
T ss_pred EecC-----CCc----eEEEEEeCCCeEEEEECCC---------------cchhheecCCCCCEEEEEEec---CCCEEE
Confidence 9942 233 45544 4589999999985 456778889999999999999 999999
Q ss_pred EEEcCCcEEEEEcCCCceEEEeccCC------------ceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCC
Q 001391 152 IGCSDNSIRVWDISNSSIILEVHSPE------------RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLL 219 (1088)
Q Consensus 152 sgs~Dg~V~iWd~~~~~~~~~~~~~~------------~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~ 219 (1088)
+|+.||+|++||+.+++....+.... ...+.+++ +++++..+++++ ++.+.+||+.
T Consensus 760 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~s~dg~~l~~~~-~~~v~~~d~~-------- 827 (1249)
T 3sfz_A 760 SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS---WSADGDKIIVAA-KNKVLLFDIH-------- 827 (1249)
T ss_dssp EEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCC---BCTTSSEEEEEE-TTEEEEEETT--------
T ss_pred EEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEE---ECCCCCEEEEEc-CCcEEEEEec--------
Confidence 99999999999999988776654221 11222333 378899998887 7899999998
Q ss_pred CCCCCccCCCCCCCCceeEecccccceeeeEEEe-CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCcee
Q 001391 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEE 298 (1088)
Q Consensus 220 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~ 298 (1088)
++..+..+. +|...|.+++|+|+++++++++.|+.|++||+.++ ..
T Consensus 828 -------------------------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~--------~~ 874 (1249)
T 3sfz_A 828 -------------------------TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR--------LK 874 (1249)
T ss_dssp -------------------------TCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT--------EE
T ss_pred -------------------------CCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC--------ce
Confidence 444454444 89999999999999999999999999999999885 33
Q ss_pred eeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCC-c-----------------------------eeEEEc--
Q 001391 299 VGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDG-K-----------------------------QLKMIK-- 344 (1088)
Q Consensus 299 i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~-~-----------------------------~~~~~~-- 344 (1088)
+. .+.+|...|.+++|+ +.++++++.||++++|++.. . .+....
T Consensus 875 ~~--~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 952 (1249)
T 3sfz_A 875 VA--DCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGK 952 (1249)
T ss_dssp EE--EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEES
T ss_pred ee--ecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecC
Confidence 43 778999999999998 67999999999999999621 0 000011
Q ss_pred ------ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCC
Q 001391 345 ------EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSK 418 (1088)
Q Consensus 345 ------~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (1088)
.+.. .+.+++++|+++++++|+.||.|++|++.... .......|
T Consensus 953 ~~~~~~~~~~-~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~-----------------------------~~~~~~~h 1002 (1249)
T 3sfz_A 953 TGQIDYLPEA-QVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR-----------------------------VFSSGVGH 1002 (1249)
T ss_dssp SCCEEEECCS-CEEEEEECTTSSEEEEEETTSCCEEEETTTTS-----------------------------CEEECCCC
T ss_pred cceEEEcccC-cEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCc-----------------------------eeeecccC
Confidence 1223 69999999999999999999999999985321 11223356
Q ss_pred CCceEEEEeccCCeE-EEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEE
Q 001391 419 SEYVRCLHLTSEDTL-YIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMT 497 (1088)
Q Consensus 419 ~~~V~~l~~s~~~~l-l~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~ 497 (1088)
...|++++|+|++.+ ++++.+|.+..|++.. .... ....+...+.++.+.++ ..+++++.||.|+
T Consensus 1003 ~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~---~~~~--~~~~~~~~v~~~~~~~~---------~~l~~~~~dg~v~ 1068 (1249)
T 3sfz_A 1003 KKAVRHIQFTADGKTLISSSEDSVIQVWNWQT---GDYV--FLQAHQETVKDFRLLQD---------SRLLSWSFDGTVK 1068 (1249)
T ss_dssp SSCCCCEEECSSSSCEEEECSSSBEEEEETTT---TEEE--CCBCCSSCEEEEEECSS---------SEEEEEESSSEEE
T ss_pred CCceEEEEECCCCCEEEEEcCCCEEEEEECCC---CceE--EEecCCCcEEEEEEcCC---------CcEEEEECCCcEE
Confidence 678999999999864 4556788888665543 3322 22234567888887553 5789999999999
Q ss_pred EEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeecc
Q 001391 498 IVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSS 577 (1088)
Q Consensus 498 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~ 577 (1088)
+|++.++..... +. .+...+.. .+++|++++|++++.||.|++||+..... ... ..
T Consensus 1069 vwd~~~~~~~~~----~~---~~~~~v~~--~~~s~d~~~l~s~s~d~~v~iwd~~~~~~--------------~~~-l~ 1124 (1249)
T 3sfz_A 1069 VWNVITGRIERD----FT---CHQGTVLS--CAISSDATKFSSTSADKTAKIWSFDLLSP--------------LHE-LK 1124 (1249)
T ss_dssp EEETTTTCCCEE----EE---CCSSCCCC--EEECSSSSSCEEECCSSCCCEECSSSSSC--------------SBC-CC
T ss_pred EEECCCCceeEE----Ec---ccCCcEEE--EEECCCCCEEEEEcCCCcEEEEECCCcce--------------eee-ec
Confidence 999987764322 11 12222333 46899999999999999999999875431 112 23
Q ss_pred ccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcce---eecccccccceeEEEEEeccCCceE
Q 001391 578 CFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLN---YFKGAHGISTVSTLSVAKLRSNQTE 654 (1088)
Q Consensus 578 ~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~---~~~g~hg~~~Vtsv~~~~~~~~~~~ 654 (1088)
+|...|++++|+|++++||+|+.||+|++|++.++.. ...+.+.. ...+|. ..|++++|+ +++.+
T Consensus 1125 ~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~~--~~v~~l~fs---~dg~~ 1192 (1249)
T 3sfz_A 1125 GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL-------LHSCAPISVEEGTATHG--GWVTDVCFS---PDSKT 1192 (1249)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCC-------CCCCCCCC-------CC--SCCCEEEEC---TTSSC
T ss_pred cCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCce-------EEEeccccccccccccC--ceEEEEEEC---CCCCE
Confidence 6899999999999999999999999999999986532 11111111 112233 579999998 67788
Q ss_pred EEEecCCCeEEEEEeecC
Q 001391 655 IRSTGGDGCICYLEYDKD 672 (1088)
Q Consensus 655 l~t~g~Dg~i~iw~~~~~ 672 (1088)
|++++ |.+++|++..+
T Consensus 1193 l~s~~--g~v~vwd~~~g 1208 (1249)
T 3sfz_A 1193 LVSAG--GYLKWWNVATG 1208 (1249)
T ss_dssp EEEES--SSEEEBCSSSC
T ss_pred EEECC--CeEEEEECCCC
Confidence 88886 89999998653
No 9
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-43 Score=451.00 Aligned_cols=512 Identities=10% Similarity=0.028 Sum_probs=342.3
Q ss_pred ceeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE
Q 001391 15 QYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1088)
Q Consensus 15 ~~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~ 93 (1088)
-|.+.|++|+|+ |+ +++||+|+ |++|+|||..+++.+..+. +...|.+++|+ | ++ .++++
T Consensus 15 gh~~~V~~lafs--pd----g~~lAsgs~Dg~I~lw~~~~~~~~~~~~--~~~~V~~l~fs-------p-g~---~L~S~ 75 (902)
T 2oaj_A 15 GMSSKPIAAAFD--FT----QNLLAIATVTGEVHIYGQQQVEVVIKLE--DRSAIKEMRFV-------K-GI---YLVVI 75 (902)
T ss_dssp ECSSCEEEEEEE--TT----TTEEEEEETTSEEEEECSTTCEEEEECS--SCCCEEEEEEE-------T-TT---EEEEE
T ss_pred CCCCCcEEEEEC--CC----CCEEEEEeCCCEEEEEeCCCcEEEEEcC--CCCCEEEEEEc-------C-CC---EEEEE
Confidence 367889999999 99 89999998 7999999998887765544 33479999999 7 52 46666
Q ss_pred ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEE-E
Q 001391 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL-E 172 (1088)
Q Consensus 94 ~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~-~ 172 (1088)
+.|++|+|||+... +.+..+. |.+.|++++|+| ++++|++|+.||+|++||+.+++... .
T Consensus 76 s~D~~v~lWd~~~~---------------~~~~~~~-~~~~V~~v~~sp---~g~~l~sgs~dg~V~lwd~~~~~~~~~~ 136 (902)
T 2oaj_A 76 NAKDTVYVLSLYSQ---------------KVLTTVF-VPGKITSIDTDA---SLDWMLIGLQNGSMIVYDIDRDQLSSFK 136 (902)
T ss_dssp ETTCEEEEEETTTC---------------SEEEEEE-CSSCEEEEECCT---TCSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ECcCeEEEEECCCC---------------cEEEEEc-CCCCEEEEEECC---CCCEEEEEcCCCcEEEEECCCCccccce
Confidence 67999999999853 3445554 678999999999 99999999999999999999887531 1
Q ss_pred e-------c--cCCceeEEEEeeecCCC-CCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccc
Q 001391 173 V-------H--SPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (1088)
Q Consensus 173 ~-------~--~~~~~~~~s~~~~~~s~-~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 242 (1088)
+ . ......+.++++. | ++..+++|+.||.| +||++
T Consensus 137 i~~~~~~~~~~~~h~~~V~sl~~s---p~~~~~l~~g~~dg~v-lWd~~------------------------------- 181 (902)
T 2oaj_A 137 LDNLQKSSFFPAARLSPIVSIQWN---PRDIGTVLISYEYVTL-TYSLV------------------------------- 181 (902)
T ss_dssp ECCHHHHHTCSSSCCCCCCEEEEE---TTEEEEEEEECSSCEE-EEETT-------------------------------
T ss_pred eccccccccccccCCCCeEEEEEc---cCCCCEEEEEeCCCcE-EEECC-------------------------------
Confidence 1 0 1122345667763 4 35789999999999 99998
Q ss_pred ccceeeeEEEeC------------------CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceee
Q 001391 243 QHTAVNLFRLVG------------------HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (1088)
Q Consensus 243 ~~~~~~~~~~~g------------------h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~ 304 (1088)
..+.+..+.+ |...|.+++|+|+|++|++++.|++|++||+.+++. .........
T Consensus 182 --~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~-----~~~r~l~~~ 254 (902)
T 2oaj_A 182 --ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHM-----IMARTVFET 254 (902)
T ss_dssp --TTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCE-----EEEECSSCS
T ss_pred --CCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE-----EEEEeeccc
Confidence 3444444444 467899999999999999999999999999988643 110000000
Q ss_pred e-------------ccCcceEEEEEC----C---CEEEEEeCC-----CcEEEEcCC-------------------Ccee
Q 001391 305 Y-------------GHNARVWDCCLT----D---SFIITAGED-----CTCRVWGSD-------------------GKQL 340 (1088)
Q Consensus 305 ~-------------~h~~~I~~v~~~----~---~~l~sg~~D-----g~i~vWd~~-------------------~~~~ 340 (1088)
. .|...|.+++|+ + .++++|+.| ..+++|++. ++..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 334 (902)
T 2oaj_A 255 EINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQM 334 (902)
T ss_dssp CTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEE
T ss_pred ccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccce
Confidence 1 245579999994 2 467788776 378899841 2234
Q ss_pred EEEc-ccCCCCeEEEEEcC----------CCCEEEEEeCCCCEEEEEcCCC-CC-CcccCCccccccCCCcceEEeeeCC
Q 001391 341 KMIK-EHIGRGIWRCLYDS----------LSSLLVTAGFDSAIKVHQFQAF-LP-GSLESHPEAKEFNGRTEIFSIKIPN 407 (1088)
Q Consensus 341 ~~~~-~h~~~~V~~l~~~~----------dg~~l~tg~~Dg~I~iwd~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (1088)
..+. .+.+ .|..+.+.+ +...+++++.||.|++|++... .. .....
T Consensus 335 ~~~~~~~~~-~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~-------------------- 393 (902)
T 2oaj_A 335 KIFPLPTNV-PIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLF-------------------- 393 (902)
T ss_dssp EEECCSSSS-CEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGS--------------------
T ss_pred EEEecCCCC-ceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccC--------------------
Confidence 4443 3444 688888765 3447899999999999998422 11 00000
Q ss_pred CccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccC-----CcceeEEeeeecCCcceEEEecCCCCCCCcCC
Q 001391 408 FSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDM-----DSVNWNKILQVSEGMPIICMDLLSNEPKYPCG 482 (1088)
Q Consensus 408 ~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~-----~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~ 482 (1088)
...+..+...|+++++++... .+|.. ....| .+.++. ..+..+++ .+
T Consensus 394 ----~~~l~~~~~~v~~~~~s~~~~-------------~~w~~~~~~~~~~~~--~l~G~~-~~v~sv~~--------sp 445 (902)
T 2oaj_A 394 ----PQNLSWLRPLATTSMAASVPN-------------KLWLGALSAAQNKDY--LLKGGV-RTKRQKLP--------AE 445 (902)
T ss_dssp ----CGGGTTBTTBEEEEEEEEEEH-------------HHHHHHHHTTBCCCC--SCCCSB-CCCCCCCC--------CS
T ss_pred ----CCcccccCCCeeEEEEEEcCH-------------HHHHHHHhcccCCCC--cccCCc-CCCCcccc--------cc
Confidence 011223445688888764210 01110 01111 223332 12222222 24
Q ss_pred CCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeee----ccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCc
Q 001391 483 IDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWS----AGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSS 558 (1088)
Q Consensus 483 ~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~ 558 (1088)
+++++++|+.|++|++||+.++.+.....+..... ..+...+.. .+++|++++||+|+.||+|++|++...+..
T Consensus 446 dg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~s--vafspdg~~LAsgs~DgtV~lwd~~~~~~~ 523 (902)
T 2oaj_A 446 YGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDK--ISFAAETLELAVSIETGDVVLFKYEVNQFY 523 (902)
T ss_dssp EEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEE--EEEETTTTEEEEEETTSCEEEEEEEECCC-
T ss_pred cCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeE--EEecCCCCeEEEEecCcEEEEEEecCcccc
Confidence 56899999999999999998875322111111100 022222333 579999999999999999999999754210
Q ss_pred c--------c--ccC-----C----------------cccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEE
Q 001391 559 V--------C--YES-----S----------------KTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLF 607 (1088)
Q Consensus 559 ~--------~--~~~-----~----------------~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw 607 (1088)
. . ... . -...+.+... ..+|...|++++||||| +||+|+.|++|+||
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-l~~h~~~V~svafSpdG-~lAsgs~D~tv~lw 601 (902)
T 2oaj_A 524 SVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTA-VHANKGKTSAINNSNIG-FVGIAYAAGSLMLI 601 (902)
T ss_dssp --------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEE-ECCCSCSEEEEEECBTS-EEEEEETTSEEEEE
T ss_pred CccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEE-EEcCCCcEEEEEecCCc-EEEEEeCCCcEEEE
Confidence 0 0 000 0 0000122223 23699999999999999 99999999999999
Q ss_pred eCCcccccccccccccccCcceeec-ccccccceeEEEEE-----eccCCceEEEEecCCCeEEEEEe
Q 001391 608 PLLRDLLNDKSVALHVEVSPLNYFK-GAHGISTVSTLSVA-----KLRSNQTEIRSTGGDGCICYLEY 669 (1088)
Q Consensus 608 ~~~~~~~~~~~~~~~~~l~~~~~~~-g~hg~~~Vtsv~~~-----~~~~~~~~l~t~g~Dg~i~iw~~ 669 (1088)
|+..... ..+ ..+..+. +|. ..|++|+|+ +.+.++.+|++++.||+|++|++
T Consensus 602 d~~~~~~-------~~~-~~~~~~~~gh~--~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 602 DRRGPAI-------IYM-ENIREISGAQS--ACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp ETTTTEE-------EEE-EEGGGTCSSCC--CCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred ECCCCeE-------EEE-eehhHhccccc--cceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 9875321 000 0112232 454 579999999 54444689999999999999999
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-41 Score=430.03 Aligned_cols=512 Identities=11% Similarity=0.100 Sum_probs=334.0
Q ss_pred cCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEE
Q 001391 129 PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVW 208 (1088)
Q Consensus 129 ~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vw 208 (1088)
.+|.+.|++++|+| ++++||+|+.||+|++|+..+.+....+. ....+.+++|. + +.+|++++.|++|++|
T Consensus 14 ~gh~~~V~~lafsp---dg~~lAsgs~Dg~I~lw~~~~~~~~~~~~--~~~~V~~l~fs---p-g~~L~S~s~D~~v~lW 84 (902)
T 2oaj_A 14 YGMSSKPIAAAFDF---TQNLLAIATVTGEVHIYGQQQVEVVIKLE--DRSAIKEMRFV---K-GIYLVVINAKDTVYVL 84 (902)
T ss_dssp EECSSCEEEEEEET---TTTEEEEEETTSEEEEECSTTCEEEEECS--SCCCEEEEEEE---T-TTEEEEEETTCEEEEE
T ss_pred cCCCCCcEEEEECC---CCCEEEEEeCCCEEEEEeCCCcEEEEEcC--CCCCEEEEEEc---C-CCEEEEEECcCeEEEE
Confidence 48999999999999 99999999999999999998877666543 23457777773 4 6699999999999999
Q ss_pred EeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001391 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE 288 (1088)
Q Consensus 209 d~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~ 288 (1088)
|+. +++.+..+. |.+.|.+++|+|+++++++|+.||+|++||+.+.
T Consensus 85 d~~---------------------------------~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~ 130 (902)
T 2oaj_A 85 SLY---------------------------------SQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRD 130 (902)
T ss_dssp ETT---------------------------------TCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTT
T ss_pred ECC---------------------------------CCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 998 556666665 7789999999999999999999999999999886
Q ss_pred cccCCCCceeeec-------eeeeccCcceEEEEECC---CEEEEEeCCCcEEEEcC-CCceeEEEccc-----------
Q 001391 289 YWKDSDSIEEVGS-------SVLYGHNARVWDCCLTD---SFIITAGEDCTCRVWGS-DGKQLKMIKEH----------- 346 (1088)
Q Consensus 289 ~~~~~~~~~~i~~-------~~~~~h~~~I~~v~~~~---~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h----------- 346 (1088)
.. ..... ....+|...|++++|++ ..+++|+.||+| +||+ .++.+..+..|
T Consensus 131 ~~------~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~ 203 (902)
T 2oaj_A 131 QL------SSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFS 203 (902)
T ss_dssp EE------EEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTC
T ss_pred cc------ccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccc
Confidence 43 11100 13467999999999985 589999999999 9999 67777777765
Q ss_pred -------CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC-CCCC--ccc---CCccccccCCCcceEEeeeCCCcccee
Q 001391 347 -------IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPG--SLE---SHPEAKEFNGRTEIFSIKIPNFSEQIR 413 (1088)
Q Consensus 347 -------~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~-~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (1088)
.. .|++++|+|+|.+|++|+.||+|++||++. +.+. ++. .|. +.. ....
T Consensus 204 ~~~~~~h~~-~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~----------------~~~-~~~~ 265 (902)
T 2oaj_A 204 EKTNEKRTP-KVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINV----------------PQP-DYIR 265 (902)
T ss_dssp CCTTSCBCC-CEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTS----------------CCT-TCCC
T ss_pred cccccccCC-CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCC----------------CCC-cCCC
Confidence 34 699999999999999999999999999954 2221 110 111 000 0000
Q ss_pred eccCCCCceEEEEec----cCC-eEEEEe-cC-----CeEEEEEeccCC---------------cceeEEeeeecCCcce
Q 001391 414 LTDSKSEYVRCLHLT----SED-TLYIAT-NH-----GYLYHTKLCDMD---------------SVNWNKILQVSEGMPI 467 (1088)
Q Consensus 414 ~~~~~~~~V~~l~~s----~~~-~ll~~t-~~-----g~i~~~~~~~~~---------------~~~~~~~~~~~~~~~i 467 (1088)
....+.+.|.+++|+ |++ .+++++ .+ ..+..+++.... ..+...++.......+
T Consensus 266 ~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v 345 (902)
T 2oaj_A 266 DSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPI 345 (902)
T ss_dssp CCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCE
T ss_pred CCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCce
Confidence 000134579999995 443 455544 22 245544431100 0011223222234556
Q ss_pred EEEecCCCC-CCC-cCCCCCeEEEecCCCCEEEEEEcCCCcCcc-e------------eeeeeee---------------
Q 001391 468 ICMDLLSNE-PKY-PCGIDDWVALGDGKGNMTIVRVVGDVHTPQ-L------------SFTFTWS--------------- 517 (1088)
Q Consensus 468 ~~l~~~~~~-~~~-s~~~~~~la~g~~dg~I~iw~~~~~~~~~~-~------------~~~~~~~--------------- 517 (1088)
..+.+.+.. +.+ ...+...+++++.||.|++|++.++..... . .....+.
T Consensus 346 ~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~ 425 (902)
T 2oaj_A 346 VNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQ 425 (902)
T ss_dssp EEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTB
T ss_pred EEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhccc
Confidence 665554321 100 012345788888999999999865532110 0 0000000
Q ss_pred ------ccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeC
Q 001391 518 ------AGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFE 591 (1088)
Q Consensus 518 ------~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spd 591 (1088)
..+..... ..+++|++++|++|+.|++|++||+..+..... ......+......+|...|++++|+||
T Consensus 426 ~~~~~l~G~~~~v~--sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~----~~~~~~l~~~~~~~h~~~V~svafspd 499 (902)
T 2oaj_A 426 NKDYLLKGGVRTKR--QKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN----ASFEVNLSRTLNKAKELAVDKISFAAE 499 (902)
T ss_dssp CCCCSCCCSBCCCC--CCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT----BCEEEEHHHHTTCSSSCCEEEEEEETT
T ss_pred CCCCcccCCcCCCC--cccccccCcEEEEecCCCcEEEEECCCccccCC----ceEEeechhhcCCCCCCceeEEEecCC
Confidence 00000011 125689999999999999999999986531100 000000000111378899999999999
Q ss_pred CCEEEEEcCCCcEEEEeCCcccccc--------c------------------------ccccccccCcceeecccccccc
Q 001391 592 DEVLFCGDLRGNLVLFPLLRDLLND--------K------------------------SVALHVEVSPLNYFKGAHGIST 639 (1088)
Q Consensus 592 g~~LatGs~dg~I~Iw~~~~~~~~~--------~------------------------~~~~~~~l~~~~~~~g~hg~~~ 639 (1088)
+++||+|+.||+|+||++.++.... + .+.....+.+...+.+|. ..
T Consensus 500 g~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~--~~ 577 (902)
T 2oaj_A 500 TLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANK--GK 577 (902)
T ss_dssp TTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCS--CS
T ss_pred CCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCC--Cc
Confidence 9999999999999999998652100 0 000001123455666666 48
Q ss_pred eeEEEEEeccCCceEEEEecCCCeEEEEEeecCCcceeeecceee--eeeeeEEEeecCCCc--cC-cccceEEEeeecc
Q 001391 640 VSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQV--KELSLIQSVSAENNS--ID-LASCNYAAGFAST 714 (1088)
Q Consensus 640 Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~~~~~~~~~~~~~--~~~~~ve~~~~~~~~--~~-~~~~~~~~Gf~~~ 714 (1088)
|++|+|+ +++ +|++++.||+|++||++....... ...... .....|..+.|.-.+ +| .++..++.|..++
T Consensus 578 V~svafS---pdG-~lAsgs~D~tv~lwd~~~~~~~~~-~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~ 652 (902)
T 2oaj_A 578 TSAINNS---NIG-FVGIAYAAGSLMLIDRRGPAIIYM-ENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMG 652 (902)
T ss_dssp EEEEEEC---BTS-EEEEEETTSEEEEEETTTTEEEEE-EEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTS
T ss_pred EEEEEec---CCc-EEEEEeCCCcEEEEECCCCeEEEE-eehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCC
Confidence 9999998 677 999999999999999855321100 001000 012335555554111 12 2346789999999
Q ss_pred cEEEEeC
Q 001391 715 DFIIWNL 721 (1088)
Q Consensus 715 ~~~iwn~ 721 (1088)
.+.+|+.
T Consensus 653 tv~~wd~ 659 (902)
T 2oaj_A 653 EVITYKI 659 (902)
T ss_dssp EEEEEEE
T ss_pred cEEEEEE
Confidence 9999997
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=9.2e-37 Score=389.31 Aligned_cols=462 Identities=14% Similarity=0.198 Sum_probs=343.3
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.+.|++++|+ |+ +++||+|. +|.|+|||+.+++.+..+..|.+ .|.+++|+ |+++ .+++++
T Consensus 12 h~~~v~~i~~s--p~----~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~-~v~~~~~s-------~~~~---~l~~~~ 74 (814)
T 3mkq_A 12 RSDRVKGIDFH--PT----EPWVLTTLYSGRVEIWNYETQVEVRSIQVTET-PVRAGKFI-------ARKN---WIIVGS 74 (814)
T ss_dssp ECSCEEEEEEC--SS----SSEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEEE-------GGGT---EEEEEE
T ss_pred CCCceEEEEEC--CC----CCEEEEEeCCCEEEEEECCCCceEEEEecCCC-cEEEEEEe-------CCCC---EEEEEe
Confidence 67889999999 99 89999988 79999999999999999998766 79999999 7773 455555
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC-ceEEEe
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS-SIILEV 173 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~-~~~~~~ 173 (1088)
.|+.|++|++.. .+.+..+.+|.+.|.+++|+| ++++|++++.|++|++||+.++ .....+
T Consensus 75 ~dg~i~vw~~~~---------------~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 136 (814)
T 3mkq_A 75 DDFRIRVFNYNT---------------GEKVVDFEAHPDYIRSIAVHP---TKPYVLSGSDDLTVKLWNWENNWALEQTF 136 (814)
T ss_dssp TTSEEEEEETTT---------------CCEEEEEECCSSCEEEEEECS---SSSEEEEEETTSEEEEEEGGGTSEEEEEE
T ss_pred CCCeEEEEECCC---------------CcEEEEEecCCCCEEEEEEeC---CCCEEEEEcCCCEEEEEECCCCceEEEEE
Confidence 699999999985 456777889999999999999 9999999999999999999987 444555
Q ss_pred ccCCceeEEEEeeecCCC-CCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE
Q 001391 174 HSPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1088)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~-~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1088)
..+. ..+.++++ +| ++..+++++.||.|++||+. .......+
T Consensus 137 ~~~~-~~v~~~~~---~p~~~~~l~~~~~dg~v~vwd~~---------------------------------~~~~~~~~ 179 (814)
T 3mkq_A 137 EGHE-HFVMCVAF---NPKDPSTFASGCLDRTVKVWSLG---------------------------------QSTPNFTL 179 (814)
T ss_dssp ECCS-SCEEEEEE---ETTEEEEEEEEETTSEEEEEETT---------------------------------CSSCSEEE
T ss_pred cCCC-CcEEEEEE---EcCCCCEEEEEeCCCeEEEEECC---------------------------------CCcceeEE
Confidence 4443 34666666 45 78899999999999999997 44445555
Q ss_pred eCC-CCCEEEEEEcC--CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC
Q 001391 253 VGH-EGSIFRIEWSS--CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED 327 (1088)
Q Consensus 253 ~gh-~~~V~~v~~sp--~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D 327 (1088)
..| ...|..++|+| ++.++++++.|+.|++||+.++ +.+. .+.+|...|.+++|+ +.+|++++.|
T Consensus 180 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~--------~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d 249 (814)
T 3mkq_A 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK--------SCVA--TLEGHMSNVSFAVFHPTLPIIISGSED 249 (814)
T ss_dssp ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT--------EEEE--EEECCSSCEEEEEECSSSSEEEEEETT
T ss_pred ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC--------cEEE--EEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 544 48999999999 9999999999999999999875 3343 678899999999998 5799999999
Q ss_pred CcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCE-EEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeee
Q 001391 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSL-LVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKI 405 (1088)
Q Consensus 328 g~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~-l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1088)
|.|++||. +++.+..+..|.. .|++++|+|++.. +++++.|+.+.+|++...
T Consensus 250 g~v~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 303 (814)
T 3mkq_A 250 GTLKIWNSSTYKVEKTLNVGLE-RSWCIATHPTGRKNYIASGFDNGFTVLSLGND------------------------- 303 (814)
T ss_dssp SCEEEEETTTCSEEEEECCSSS-SEEEEEECTTCGGGEEEEEETTEEEEEECSCC-------------------------
T ss_pred CeEEEEECCCCcEEEEeecCCC-cEEEEEEccCCCceEEEEEeCCCEEEEEcCCC-------------------------
Confidence 99999999 7888999998887 6999999999873 244455777889987431
Q ss_pred CCCccceeeccCCCCceEEEEeccCCeEEEEecCC----eEEEEEec------cCCcceeEEeeeecCCcceEEEecCCC
Q 001391 406 PNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHG----YLYHTKLC------DMDSVNWNKILQVSEGMPIICMDLLSN 475 (1088)
Q Consensus 406 ~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g----~i~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~~~~ 475 (1088)
...+.++|++.+++..... .++...+. ..................+.++++.+
T Consensus 304 ----------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp- 366 (814)
T 3mkq_A 304 ----------------EPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP- 366 (814)
T ss_dssp ----------------SCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-
T ss_pred ----------------CceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-
Confidence 1123345555555443211 11111111 00000000011122234455666644
Q ss_pred CCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCC
Q 001391 476 EPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDP 555 (1088)
Q Consensus 476 ~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~ 555 (1088)
++.++++++ +|.+.+|++...... ....+. ..+++|+++++++++.+|.+++|+.-
T Consensus 367 -------dg~~la~~~-~~~~~i~~~~~~~~~------------~~~~i~--~~~~spdg~~la~~~~~g~v~l~~~~-- 422 (814)
T 3mkq_A 367 -------NGRFVTVVG-DGEYVIYTALAWRNK------------AFGKCQ--DFVWGPDSNSYALIDETGQIKYYKNF-- 422 (814)
T ss_dssp -------TSSEEEEEE-TTEEEEEETTTTEEE------------EEEECS--EEEECTTSSCEEEECTTCCEEEEETT--
T ss_pred -------CCCEEEEec-CCEEEEEECcccccc------------CCCceE--EEEEeCCCCeEEEEeCCCcEEEEECC--
Confidence 457888887 899999996432110 011122 25689999999999999999999632
Q ss_pred CCcccccCCcccceeeeeeeccccCceEEEEEeeeCC---CEEEEEcCCCcEEEEeCCcccccccccccccccCcceeec
Q 001391 556 FSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFED---EVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFK 632 (1088)
Q Consensus 556 ~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg---~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~ 632 (1088)
.+|...|.+++|+|++ .+|++++.|++|++||+.++. ....+.
T Consensus 423 ---------------------~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~-------------~~~~~~ 468 (814)
T 3mkq_A 423 ---------------------KEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGT-------------LVRRID 468 (814)
T ss_dssp ---------------------EECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCC-------------EEEEES
T ss_pred ---------------------CCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCc-------------EEEEEe
Confidence 1456678899999998 688899999999999998642 123333
Q ss_pred ccccccceeEEEEEeccCCceEEEEe------cCCCeEEEEE
Q 001391 633 GAHGISTVSTLSVAKLRSNQTEIRST------GGDGCICYLE 668 (1088)
Q Consensus 633 g~hg~~~Vtsv~~~~~~~~~~~l~t~------g~Dg~i~iw~ 668 (1088)
++. ..+.|+ +++.+|+++ +.|+.+.+|-
T Consensus 469 ~~~-----~~v~~s---~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 469 VNA-----KDVIWS---DNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp SCE-----EEEEEC---TTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred cCC-----CEEEEc---CCCCEEEEEEcCcccCCceEEEEEe
Confidence 222 278888 778899999 7777666654
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.8e-34 Score=363.39 Aligned_cols=438 Identities=13% Similarity=0.184 Sum_probs=324.6
Q ss_pred eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCc
Q 001391 55 TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW 134 (1088)
Q Consensus 55 ~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 134 (1088)
+..+.+.+|.+ +|.+++|+ |+++ .+++++.++.|+|||+.. .+.+..+.+|...
T Consensus 4 ~~~~~~~~h~~-~v~~i~~s-------p~~~---~la~~~~~g~v~iwd~~~---------------~~~~~~~~~~~~~ 57 (814)
T 3mkq_A 4 DIKKTFSNRSD-RVKGIDFH-------PTEP---WVLTTLYSGRVEIWNYET---------------QVEVRSIQVTETP 57 (814)
T ss_dssp CCEEEEEEECS-CEEEEEEC-------SSSS---EEEEEETTSEEEEEETTT---------------TEEEEEEECCSSC
T ss_pred ccceeeecCCC-ceEEEEEC-------CCCC---EEEEEeCCCEEEEEECCC---------------CceEEEEecCCCc
Confidence 34567888776 79999999 7772 444445599999999874 4577788899999
Q ss_pred EEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCc
Q 001391 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (1088)
Q Consensus 135 I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~ 214 (1088)
|.+++|+| ++++|++|+.||.|++||+.+++.+..+..+.. .+.++++ ++++.+|++++.||.|++||+.
T Consensus 58 v~~~~~s~---~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~v~~~~~---s~~~~~l~~~~~dg~i~vw~~~--- 127 (814)
T 3mkq_A 58 VRAGKFIA---RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPD-YIRSIAV---HPTKPYVLSGSDDLTVKLWNWE--- 127 (814)
T ss_dssp EEEEEEEG---GGTEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEE---CSSSSEEEEEETTSEEEEEEGG---
T ss_pred EEEEEEeC---CCCEEEEEeCCCeEEEEECCCCcEEEEEecCCC-CEEEEEE---eCCCCEEEEEcCCCEEEEEECC---
Confidence 99999999 999999999999999999999999888876654 4667776 6889999999999999999998
Q ss_pred cccCCCCCCCccCCCCCCCCceeEecccccce-eeeEEEeCCCCCEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCcccC
Q 001391 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA-VNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKD 292 (1088)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~~~~gh~~~V~~v~~sp-~g~~l~s~s~Dg~v~iWd~~~~~~~~ 292 (1088)
.. .....+.+|...|.+++|+| ++..+++++.|+.|++||+.++..
T Consensus 128 ------------------------------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~-- 175 (814)
T 3mkq_A 128 ------------------------------NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-- 175 (814)
T ss_dssp ------------------------------GTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC--
T ss_pred ------------------------------CCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc--
Confidence 33 56777889999999999999 889999999999999999987532
Q ss_pred CCCceeeeceeeeccCcceEEEEEC----CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEe
Q 001391 293 SDSIEEVGSSVLYGHNARVWDCCLT----DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367 (1088)
Q Consensus 293 ~~~~~~i~~~~~~~h~~~I~~v~~~----~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~ 367 (1088)
.. .....|...+.+++|+ +.++++++.||.|++||+ +++.+..+.+|.+ .|.+++|+|++++|++++
T Consensus 176 ------~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~ 247 (814)
T 3mkq_A 176 ------NF-TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGS 247 (814)
T ss_dssp ------SE-EEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEE
T ss_pred ------ee-EEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEe
Confidence 11 1233445889999996 579999999999999999 7888889999988 799999999999999999
Q ss_pred CCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCe--EEEEecCCeEEEE
Q 001391 368 FDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT--LYIATNHGYLYHT 445 (1088)
Q Consensus 368 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~--ll~~t~~g~i~~~ 445 (1088)
.||.|++||+.... ....+..+...+.+++|+|++. +++++.++.+..+
T Consensus 248 ~dg~v~vwd~~~~~-----------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (814)
T 3mkq_A 248 EDGTLKIWNSSTYK-----------------------------VEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298 (814)
T ss_dssp TTSCEEEEETTTCS-----------------------------EEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEE
T ss_pred CCCeEEEEECCCCc-----------------------------EEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEE
Confidence 99999999985321 0112233446799999999985 5777777777655
Q ss_pred EeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCC---EEE------EEEcCCCcCcceeeeeee
Q 001391 446 KLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGN---MTI------VRVVGDVHTPQLSFTFTW 516 (1088)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~---I~i------w~~~~~~~~~~~~~~~~~ 516 (1088)
++..... . +.+. +++..+++++.+.. +.. |++..+.........
T Consensus 299 ~~~~~~~--------------~--~~~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 351 (814)
T 3mkq_A 299 SLGNDEP--------------T--LSLD--------PVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKE--- 351 (814)
T ss_dssp ECSCCSC--------------C--EEEC--------SSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEE---
T ss_pred EcCCCCc--------------e--eEEC--------CCCCEEEECcccccceeeeeeecccccccccCccceeeeec---
Confidence 5432211 1 1111 12345555544432 111 111221111100000
Q ss_pred eccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEE
Q 001391 517 SAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLF 596 (1088)
Q Consensus 517 ~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~La 596 (1088)
.......+. ..+++|+|++|++++ ++.+.+|++... ...+...|++++|+|++++||
T Consensus 352 ~~~~~~~~~--~~~~spdg~~la~~~-~~~~~i~~~~~~--------------------~~~~~~~i~~~~~spdg~~la 408 (814)
T 3mkq_A 352 LGSVDVFPQ--SLAHSPNGRFVTVVG-DGEYVIYTALAW--------------------RNKAFGKCQDFVWGPDSNSYA 408 (814)
T ss_dssp ECCCSSCCS--EEEECTTSSEEEEEE-TTEEEEEETTTT--------------------EEEEEEECSEEEECTTSSCEE
T ss_pred CCCCccCCc--eeEECCCCCEEEEec-CCEEEEEECccc--------------------cccCCCceEEEEEeCCCCeEE
Confidence 001111122 256899999999987 899999997532 112356788999999999999
Q ss_pred EEcCCCcEEEEeCCcccccccccccccccCcceeecccccccceeEEEEEeccCCc---eEEEEecCCCeEEEEEeecCC
Q 001391 597 CGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQ---TEIRSTGGDGCICYLEYDKDR 673 (1088)
Q Consensus 597 tGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~---~~l~t~g~Dg~i~iw~~~~~~ 673 (1088)
+++.+|.|++|+...+ |. ..|.++.|+ +++ ..|++++.||.|++|++..+.
T Consensus 409 ~~~~~g~v~l~~~~~~---------------------~~--~~v~~~~~s---~dg~~~~~l~~~~~d~~v~~~d~~~~~ 462 (814)
T 3mkq_A 409 LIDETGQIKYYKNFKE---------------------VT--SWSVPMHSA---IDRLFSGALLGVKSDGFVYFFDWDNGT 462 (814)
T ss_dssp EECTTCCEEEEETTEE---------------------CT--TCCCCCSSC---CCEEECSSSEEEEETTEEEEECTTTCC
T ss_pred EEeCCCcEEEEECCCC---------------------cc--ceEEcCCcC---ccceecceEEEEecCCEEEEEECCcCc
Confidence 9999999999974321 21 245666666 454 478999999999999997653
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.8e-35 Score=342.42 Aligned_cols=279 Identities=19% Similarity=0.348 Sum_probs=248.6
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.++|++++|+ |+ +.+|++|+ |++|+|||+.+++.+.++.+|.+ .|.+++|+ |+++ .+++++
T Consensus 107 h~~~V~~~~~~--p~----~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~-~V~~v~~~-------~~~~---~l~sgs 169 (410)
T 1vyh_C 107 HRSPVTRVIFH--PV----FSVMVSASEDATIKVWDYETGDFERTLKGHTD-SVQDISFD-------HSGK---LLASCS 169 (410)
T ss_dssp CSSCEEEEEEC--SS----SSEEEEEESSSCEEEEETTTCCCCEEECCCSS-CEEEEEEC-------TTSS---EEEEEE
T ss_pred cCCcEEEEEEc--CC----CCEEEEEeCCCeEEEEECCCCcEEEEEeccCC-cEEEEEEc-------CCCC---EEEEEe
Confidence 67899999999 99 88999988 79999999999999999998777 79999999 7773 455556
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.|++|+|||+.. .+.+..+.+|...|.+++|+| ++++|++|+.|++|++||+.++..+..+.
T Consensus 170 ~D~~i~iwd~~~---------------~~~~~~~~~h~~~V~~v~~~p---~~~~l~s~s~D~~i~~wd~~~~~~~~~~~ 231 (410)
T 1vyh_C 170 ADMTIKLWDFQG---------------FECIRTMHGHDHNVSSVSIMP---NGDHIVSASRDKTIKMWEVQTGYCVKTFT 231 (410)
T ss_dssp TTSCCCEEETTS---------------SCEEECCCCCSSCEEEEEECS---SSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCCeEEEEeCCC---------------CceeEEEcCCCCCEEEEEEeC---CCCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 699999999874 457788899999999999999 99999999999999999999999998887
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
.+... +..+.+ ++++.+|++|+.|+.|++||+. +......+.+
T Consensus 232 ~h~~~-v~~~~~---~~~g~~l~s~s~D~~v~vwd~~---------------------------------~~~~~~~~~~ 274 (410)
T 1vyh_C 232 GHREW-VRMVRP---NQDGTLIASCSNDQTVRVWVVA---------------------------------TKECKAELRE 274 (410)
T ss_dssp CCSSC-EEEEEE---CTTSSEEEEEETTSCEEEEETT---------------------------------TCCEEEEECC
T ss_pred CCCcc-EEEEEE---CCCCCEEEEEcCCCeEEEEECC---------------------------------CCceeeEecC
Confidence 66543 445554 6889999999999999999998 6677788899
Q ss_pred CCCCEEEEEEcCC--------------------CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEE
Q 001391 255 HEGSIFRIEWSSC--------------------GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDC 314 (1088)
Q Consensus 255 h~~~V~~v~~sp~--------------------g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v 314 (1088)
|...|.+++|+|+ +.++++++.|++|++||+.++ ..+. .+.+|...|.++
T Consensus 275 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~--------~~~~--~~~~h~~~v~~v 344 (410)
T 1vyh_C 275 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG--------MCLM--TLVGHDNWVRGV 344 (410)
T ss_dssp CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT--------EEEE--EEECCSSCEEEE
T ss_pred CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC--------ceEE--EEECCCCcEEEE
Confidence 9999999999996 678999999999999999885 3443 778999999999
Q ss_pred EEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 315 CLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 315 ~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
+|+ +.+|++|+.||+|++||+ .++++..+.+|.. .|++++|+|++.+|++|+.||+|++|++
T Consensus 345 ~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 345 LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH-FVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS-CEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC-cEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 998 679999999999999999 7888999999998 7999999999999999999999999986
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.7e-34 Score=321.34 Aligned_cols=283 Identities=17% Similarity=0.286 Sum_probs=242.4
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCee--EEEEeeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTL--IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~--~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
|.++|.+|+|+ |+....+.+|++|+ |++|+|||+.+++. ...+.+|.. .|.+++|+ +++. .+++
T Consensus 31 H~~~V~~v~~~--~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~-~v~~~~~~-------~~~~---~l~s 97 (321)
T 3ow8_A 31 HDDAIWSVAWG--TNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQL-GVVSVDIS-------HTLP---IAAS 97 (321)
T ss_dssp SSSCEEEEEEC---------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEEC-------SSSS---EEEE
T ss_pred CCCcEEEEEEe--cCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCC-CEEEEEEC-------CCCC---EEEE
Confidence 67999999999 75222357899988 89999999988754 345677666 79999999 6662 4444
Q ss_pred EECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEE
Q 001391 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1088)
Q Consensus 93 ~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~ 172 (1088)
++.|++|++||+.. .+.+..+..|...+.+++|+| ++++|++|+.|+.|++||+.+++....
T Consensus 98 ~s~D~~i~lWd~~~---------------~~~~~~~~~~~~~~~~~~~sp---dg~~l~~g~~dg~v~i~~~~~~~~~~~ 159 (321)
T 3ow8_A 98 SSLDAHIRLWDLEN---------------GKQIKSIDAGPVDAWTLAFSP---DSQYLATGTHVGKVNIFGVESGKKEYS 159 (321)
T ss_dssp EETTSEEEEEETTT---------------TEEEEEEECCTTCCCCEEECT---TSSEEEEECTTSEEEEEETTTCSEEEE
T ss_pred EeCCCcEEEEECCC---------------CCEEEEEeCCCccEEEEEECC---CCCEEEEEcCCCcEEEEEcCCCceeEE
Confidence 45599999999985 456777888999999999999 999999999999999999999998887
Q ss_pred eccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE
Q 001391 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1088)
Q Consensus 173 ~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1088)
+..+.. .+.++++ +|++.+|++|+.||.|++||+. +++.+..+
T Consensus 160 ~~~~~~-~v~~~~~---spdg~~lasg~~dg~i~iwd~~---------------------------------~~~~~~~~ 202 (321)
T 3ow8_A 160 LDTRGK-FILSIAY---SPDGKYLASGAIDGIINIFDIA---------------------------------TGKLLHTL 202 (321)
T ss_dssp EECSSS-CEEEEEE---CTTSSEEEEEETTSCEEEEETT---------------------------------TTEEEEEE
T ss_pred ecCCCc-eEEEEEE---CCCCCEEEEEcCCCeEEEEECC---------------------------------CCcEEEEE
Confidence 765543 3556666 6899999999999999999998 67788899
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcE
Q 001391 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTC 330 (1088)
Q Consensus 253 ~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i 330 (1088)
.+|...|.+++|+|++++|++++.|++|++||+.+. ..+. .+.+|...|.+++|+ +.+|++++.|++|
T Consensus 203 ~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~--------~~~~--~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v 272 (321)
T 3ow8_A 203 EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA--------NLAG--TLSGHASWVLNVAFCPDDTHFVSSSSDKSV 272 (321)
T ss_dssp CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC--------CEEE--EECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc--------ceeE--EEcCCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 999999999999999999999999999999999875 3333 788999999999998 6799999999999
Q ss_pred EEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 331 RVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 331 ~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
++||+ +++++..+.+|.+ .|++++|+|++.+|++++.||.|++||.
T Consensus 273 ~iwd~~~~~~~~~~~~h~~-~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 273 KVWDVGTRTCVHTFFDHQD-QVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEeCCCCEEEEEEcCCCC-cEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 99999 7889999999988 7999999999999999999999999996
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=9.8e-34 Score=321.76 Aligned_cols=283 Identities=16% Similarity=0.258 Sum_probs=243.3
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.++|.+++|+ |+ +++|++|+ |++|+|||+.+++.+..+..+.. .|.+++|+ |+++ .+++++
T Consensus 54 H~~~v~~~~~s--~d----~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~-~v~~~~~s-------~~~~---~l~s~~ 116 (340)
T 1got_B 54 HLAKIYAMHWG--TD----SRLLLSASQDGKLIIWDSYTTNKVHAIPLRSS-WVMTCAYA-------PSGN---YVACGG 116 (340)
T ss_dssp CSSCEEEEEEC--TT----SSEEEEEETTTEEEEEETTTCCEEEEEECSSS-CEEEEEEC-------TTSS---EEEEEE
T ss_pred CCCceEEEEEC--CC----CCEEEEEeCCCcEEEEECCCCCcceEeecCCc-cEEEEEEC-------CCCC---EEEEEe
Confidence 67899999999 99 89999988 79999999999999999988666 79999999 7772 444445
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.|+.|++|++.... ...+....+.+|.+.|.++.|++ ++. +++++.|++|++||+.+++.+..+.
T Consensus 117 ~d~~v~iw~~~~~~-----------~~~~~~~~~~~h~~~v~~~~~~~---~~~-l~s~s~d~~i~~wd~~~~~~~~~~~ 181 (340)
T 1got_B 117 LDNICSIYNLKTRE-----------GNVRVSRELAGHTGYLSCCRFLD---DNQ-IVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp TTCEEEEEETTTCS-----------BSCEEEEEEECCSSCEEEEEEEE---TTE-EEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CCCeEEEEECccCC-----------CcceeEEEecCCCccEEEEEECC---CCc-EEEEECCCcEEEEECCCCcEEEEEc
Confidence 59999999997532 01356677889999999999998 765 8899999999999999999998887
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
.+.. .+.++++ +|++.++++|+.|+.|++||++ ++..+..+.+
T Consensus 182 ~h~~-~v~~~~~---~~~~~~l~sg~~d~~v~~wd~~---------------------------------~~~~~~~~~~ 224 (340)
T 1got_B 182 GHTG-DVMSLSL---APDTRLFVSGACDASAKLWDVR---------------------------------EGMCRQTFTG 224 (340)
T ss_dssp CCSS-CEEEEEE---CTTSSEEEEEETTSCEEEEETT---------------------------------TCSEEEEECC
T ss_pred CCCC-ceEEEEE---CCCCCEEEEEeCCCcEEEEECC---------------------------------CCeeEEEEcC
Confidence 6654 3667776 6788999999999999999998 6777888999
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEE
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRV 332 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~v 332 (1088)
|...|.+++|+|++++|++++.|++|++||+...+ .+..+....+...|.+++|+ +.+|++|+.|+.|++
T Consensus 225 h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~--------~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~v 296 (340)
T 1got_B 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQ--------ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--------EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCc--------EEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEE
Confidence 99999999999999999999999999999998853 22211222344579999998 689999999999999
Q ss_pred EcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 001391 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 333 Wd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd 376 (1088)
||. .++.+..+.+|.+ +|++++|+|++.+|++|+.||.|++||
T Consensus 297 wd~~~~~~~~~~~~h~~-~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 297 WDALKADRAGVLAGHDN-RVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EETTTCCEEEEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEcccCcEeeEeecCCC-cEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999 7888899999998 799999999999999999999999996
No 16
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=320.70 Aligned_cols=293 Identities=16% Similarity=0.172 Sum_probs=228.3
Q ss_pred ceEEecCCCc---eeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCC------------CeeEEEEeeeCCcceEE
Q 001391 6 LSEWRLDVGQ---YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEA------------GTLIRPFQVFHGIRLHG 70 (1088)
Q Consensus 6 i~iWdl~~g~---~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~t------------g~~~~~~~~~~~~~V~~ 70 (1088)
.+.|++.... +...|.+++|+ || |++|+++++.++++||... +.....+. ++. .|.+
T Consensus 16 ~r~w~~~~~~~~~~~~~v~~~~fs--~d----G~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~~ 87 (344)
T 4gqb_B 16 AREWNLPPNAPACMERQLEAARYR--SD----GALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQ-TEA-GVAD 87 (344)
T ss_dssp -------CCSCSSCCSEEEEEEEC--TT----SCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEE-ESS-CEEE
T ss_pred ccccCCCCCCcccccCCEEEEEEC--CC----CCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeec-cCC-CEEE
Confidence 5788876654 55779999999 99 8999999998888887321 11112222 233 6999
Q ss_pred EEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEE
Q 001391 71 ISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL 150 (1088)
Q Consensus 71 i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~l 150 (1088)
++|+ |++ .+++++.|++|+|||++.... .......+.+|.+.|++++|+| ++++|
T Consensus 88 ~~~s-------~d~----~l~~~s~dg~v~lWd~~~~~~-----------~~~~~~~~~~H~~~V~~v~~sp---dg~~l 142 (344)
T 4gqb_B 88 LTWV-------GER----GILVASDSGAVELWELDENET-----------LIVSKFCKYEHDDIVSTVSVLS---SGTQA 142 (344)
T ss_dssp EEEE-------TTT----EEEEEETTSEEEEEEECTTSS-----------CEEEEEEEECCSSCEEEEEECT---TSSEE
T ss_pred EEEe-------CCC----eEEEEECCCEEEEEeccCCCc-----------eeEeeccccCCCCCEEEEEECC---CCCEE
Confidence 9999 775 777788899999999986430 1123344568999999999999 99999
Q ss_pred EEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCC-cEEEEEecCCeEEEEEeccCccccCCCCCCCccCCC
Q 001391 151 AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEA-LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (1088)
Q Consensus 151 asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~-~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~ 229 (1088)
++|+.|++|++||+.+++.+..+.+|... ++++.+ ++++ .++++|+.|++|++||++
T Consensus 143 ~sgs~d~~i~iwd~~~~~~~~~~~~h~~~-V~~~~~---~~~~~~~l~s~s~D~~v~iwd~~------------------ 200 (344)
T 4gqb_B 143 VSGSKDICIKVWDLAQQVVLSSYRAHAAQ-VTCVAA---SPHKDSVFLSCSEDNRILLWDTR------------------ 200 (344)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSC-EEEEEE---CSSCTTEEEEEETTSCEEEEETT------------------
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcCcCCc-eEEEEe---cCCCCCceeeecccccccccccc------------------
Confidence 99999999999999999999998877653 566666 4555 578999999999999998
Q ss_pred CCCCCceeEecccccceeeeEEE--eCCCCCEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeec
Q 001391 230 SSSDFKCFKLQDQQHTAVNLFRL--VGHEGSIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG 306 (1088)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~--~gh~~~V~~v~~sp~-g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~ 306 (1088)
.++....+ ..|...+.+++|+|+ ++++++++.|++|++||+++++ .+. .+.+
T Consensus 201 ---------------~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~--------~~~--~~~~ 255 (344)
T 4gqb_B 201 ---------------CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS--------CVL--SSAV 255 (344)
T ss_dssp ---------------SSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC----------CCE--EEEC
T ss_pred ---------------ccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc--------EEE--EEcC
Confidence 44444444 356678999999995 5688999999999999998853 343 7889
Q ss_pred cCcceEEEEEC--C-CEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEcCC
Q 001391 307 HNARVWDCCLT--D-SFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 307 h~~~I~~v~~~--~-~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~-~l~tg~~Dg~I~iwd~~~ 379 (1088)
|...|++++|+ + .+|++|+.|++|++||+....+..+.+|.+ .|++++|+|++. +|+++|.||+|++|++..
T Consensus 256 h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~-~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 256 HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRD-FVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSS-CEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCC-CEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 99999999998 3 579999999999999995555667889998 799999999986 678999999999999964
No 17
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.6e-33 Score=319.99 Aligned_cols=287 Identities=13% Similarity=0.239 Sum_probs=243.6
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.++|.+++|+ |+ +++|++|+ |++|+|||..+++..+.+..+.. .|.+++|+ |++ ..++++
T Consensus 63 H~~~V~~~~~s--~d----~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~-~v~~~~~s-------p~g----~~lasg 124 (354)
T 2pbi_B 63 HGNKVLCMDWC--KD----KRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCT-WVMACAYA-------PSG----CAIACG 124 (354)
T ss_dssp CSSCEEEEEEC--TT----SSEEEEEETTSEEEEEETTTCCEEEEEECSSS-CCCEEEEC-------TTS----SEEEEE
T ss_pred CCCeEEEEEEC--CC----CCEEEEEeCCCeEEEEECCCCCcceEEecCCC-CEEEEEEC-------CCC----CEEEEe
Confidence 67899999999 99 89999988 79999999999999998887665 79999999 787 566666
Q ss_pred C-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEe
Q 001391 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1088)
Q Consensus 95 g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~ 173 (1088)
+ |+.+++|++....... .......+.+|.+.|.+++|+| ++..|++|+.|++|++||+++++.+..+
T Consensus 125 ~~d~~i~v~~~~~~~~~~---------~~~~~~~~~~h~~~v~~~~~~~---~~~~l~t~s~D~~v~lwd~~~~~~~~~~ 192 (354)
T 2pbi_B 125 GLDNKCSVYPLTFDKNEN---------MAAKKKSVAMHTNYLSACSFTN---SDMQILTASGDGTCALWDVESGQLLQSF 192 (354)
T ss_dssp STTSEEEEEECCCCTTCC---------SGGGCEEEEECSSCEEEEEECS---SSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred eCCCCEEEEEEecccccc---------ccccceeeeccCCcEEEEEEeC---CCCEEEEEeCCCcEEEEeCCCCeEEEEE
Confidence 5 9999999987543111 1234556778999999999999 9999999999999999999999999888
Q ss_pred ccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe
Q 001391 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1088)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1088)
..+... +.++.+. .++++.+|++|+.||.|++||++ +++.+..+.
T Consensus 193 ~~h~~~-v~~~~~~-~~~~g~~l~sgs~Dg~v~~wd~~---------------------------------~~~~~~~~~ 237 (354)
T 2pbi_B 193 HGHGAD-VLCLDLA-PSETGNTFVSGGCDKKAMVWDMR---------------------------------SGQCVQAFE 237 (354)
T ss_dssp ECCSSC-EEEEEEC-CCSSCCEEEEEETTSCEEEEETT---------------------------------TCCEEEEEC
T ss_pred cCCCCC-eEEEEEE-eCCCCCEEEEEeCCCeEEEEECC---------------------------------CCcEEEEec
Confidence 876543 4455543 23467899999999999999998 677788899
Q ss_pred CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEE
Q 001391 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCR 331 (1088)
Q Consensus 254 gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~ 331 (1088)
+|...|.+++|+|++.+|++++.|++|++||+...+. +..+....+...+.+++|+ +.+|++|+.|++|+
T Consensus 238 ~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~--------~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~ 309 (354)
T 2pbi_B 238 THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE--------VAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTIN 309 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--------EEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE--------EEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEE
Confidence 9999999999999999999999999999999987532 2211222334578999998 68999999999999
Q ss_pred EEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 001391 332 VWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 332 vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd 376 (1088)
+||+ +++.+..+.+|.+ .|++++|+|++++|++|+.||+|++|+
T Consensus 310 vwd~~~~~~~~~l~~h~~-~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 310 VWDVLKGSRVSILFGHEN-RVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEETTTCSEEEEECCCSS-CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEECCCCceEEEEECCCC-cEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999 8888999999998 799999999999999999999999995
No 18
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1e-32 Score=308.04 Aligned_cols=279 Identities=18% Similarity=0.303 Sum_probs=234.6
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.++|++++|+ |+ +++|++|+ |++|+|||+.+++.+..+..+.. .|.+++|+ |+++ .+++++
T Consensus 12 h~~~V~~~~fs--p~----~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~-~v~~~~~~-------~~~~---~l~s~s 74 (304)
T 2ynn_A 12 RSDRVKGIDFH--PT----EPWVLTTLYSGRVELWNYETQVEVRSIQVTET-PVRAGKFI-------ARKN---WIIVGS 74 (304)
T ss_dssp ECSCEEEEEEC--SS----SSEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEEE-------GGGT---EEEEEE
T ss_pred CCCceEEEEEC--CC----CCEEEEEcCCCcEEEEECCCCceeEEeeccCC-cEEEEEEe-------CCCC---EEEEEC
Confidence 67889999999 99 89999988 79999999999999999998766 79999999 6763 555566
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceE-EEe
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII-LEV 173 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~-~~~ 173 (1088)
.|++|++||+.. .+.+..+.+|.+.|.+++|+| ++++|++|+.|++|++||+.++... ..+
T Consensus 75 ~d~~i~vwd~~~---------------~~~~~~~~~h~~~v~~~~~~~---~~~~l~sgs~D~~v~lWd~~~~~~~~~~~ 136 (304)
T 2ynn_A 75 DDFRIRVFNYNT---------------GEKVVDFEAHPDYIRSIAVHP---TKPYVLSGSDDLTVKLWNWENNWALEQTF 136 (304)
T ss_dssp TTSEEEEEETTT---------------CCEEEEEECCSSCEEEEEECS---SSSEEEEEETTSCEEEEEGGGTTEEEEEE
T ss_pred CCCEEEEEECCC---------------CcEEEEEeCCCCcEEEEEEcC---CCCEEEEECCCCeEEEEECCCCcchhhhh
Confidence 699999999985 456778899999999999999 9999999999999999999987554 445
Q ss_pred ccCCceeEEEEeeecCCC-CCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEE-
Q 001391 174 HSPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR- 251 (1088)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~-~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~- 251 (1088)
..+. ..+.++++ +| ++..|++|+.|++|++||+. .......
T Consensus 137 ~~h~-~~v~~v~~---~p~~~~~l~sgs~D~~v~iwd~~---------------------------------~~~~~~~~ 179 (304)
T 2ynn_A 137 EGHE-HFVMCVAF---NPKDPSTFASGCLDRTVKVWSLG---------------------------------QSTPNFTL 179 (304)
T ss_dssp CCCC-SCEEEEEE---CTTCTTEEEEEETTSEEEEEETT---------------------------------CSSCSEEE
T ss_pred cccC-CcEEEEEE---CCCCCCEEEEEeCCCeEEEEECC---------------------------------CCCcccee
Confidence 4444 45667776 45 57899999999999999997 3333333
Q ss_pred EeCCCCCEEEEEEcC--CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC
Q 001391 252 LVGHEGSIFRIEWSS--CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED 327 (1088)
Q Consensus 252 ~~gh~~~V~~v~~sp--~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D 327 (1088)
..+|...|..+.|+| ++.+|++++.|++|++||+.++ +.+. .+.+|...|.+++|+ +.+|++|+.|
T Consensus 180 ~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~--------~~~~--~~~~h~~~v~~~~~~p~~~~l~s~s~D 249 (304)
T 2ynn_A 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK--------SCVA--TLEGHMSNVSFAVFHPTLPIIISGSED 249 (304)
T ss_dssp ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT--------EEEE--EEECCSSCEEEEEECSSSSEEEEEETT
T ss_pred ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC--------ccce--eeCCCCCCEEEEEECCCCCEEEEEcCC
Confidence 346778899999987 7789999999999999999885 4444 788999999999998 5789999999
Q ss_pred CcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC--EEEEEeCCCCEEEEEcC
Q 001391 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS--LLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 328 g~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~--~l~tg~~Dg~I~iwd~~ 378 (1088)
|+|++||. +++.+..+..|.. .+++++++|++. ++++|+.|| +.+|++.
T Consensus 250 g~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~ 301 (304)
T 2ynn_A 250 GTLKIWNSSTYKVEKTLNVGLE-RSWCIATHPTGRKNYIASGFDNG-FTVLSLG 301 (304)
T ss_dssp SCEEEEETTTCCEEEEECCSSS-SEEEEEECTTCGGGCEEEEETTE-EEEEECC
T ss_pred CeEEEEECCCCceeeeccCCCc-cEEEEEECCCCCceEEEEecCCc-eEEEEec
Confidence 99999999 7889999999887 699999999875 577776555 7788774
No 19
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=9.1e-34 Score=327.33 Aligned_cols=295 Identities=17% Similarity=0.285 Sum_probs=239.9
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.++|++++|+ |+ +++|++|+ |++|+|||+.+++.+..+..|.. .|.+++|+ |++ .+++++
T Consensus 65 H~~~V~~~~~s--p~----~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~-~v~~~~~s-------~~g----~~las~ 126 (380)
T 3iz6_a 65 HSGKVYSLDWT--PE----KNWIVSASQDGRLIVWNALTSQKTHAIKLHCP-WVMECAFA-------PNG----QSVACG 126 (380)
T ss_dssp CSSCEEEEEEC--TT----SSCEEEEETTSEEEEEETTTTEEEEEEECCCT-TCCCCEEC-------TTS----SEEEEC
T ss_pred cccEEEEEEEc--CC----CCEEEEEeCCCeEEEEECCCCccceEEecCCC-CEEEEEEC-------CCC----CEEEEe
Confidence 67899999999 99 88999988 79999999999999999998776 69999999 787 556555
Q ss_pred C-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC-CCEEEEEEcCCcEEEEEcCCCceEEE
Q 001391 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG-NRSLAIGCSDNSIRVWDISNSSIILE 172 (1088)
Q Consensus 95 g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d-~~~lasgs~Dg~V~iWd~~~~~~~~~ 172 (1088)
+ |+.+++|++........ .......+.+|.+.|.++.|+| + +..|++|+.|++|++||+.+++.+..
T Consensus 127 ~~d~~v~iw~~~~~~~~~~--------~~~~~~~~~gh~~~v~~~~~~~---~~~~~l~s~s~D~~i~~wd~~~~~~~~~ 195 (380)
T 3iz6_a 127 GLDSACSIFNLSSQADRDG--------NMPVSRVLTGHKGYASSCQYVP---DQETRLITGSGDQTCVLWDVTTGQRISI 195 (380)
T ss_dssp CSSSCCEEEECCCCSSCCC--------SSTTCCBCCCCSSCCCCCBCCS---SSSSCEEEECTTSCEEEECTTTCCEEEE
T ss_pred eCCCcEEEEECCCCccccC--------CccceeeccCCCcceEEEEEec---CCCCEEEEECCCCcEEEEEcCCCcEEEE
Confidence 4 99999999975321111 1345567889999999999999 5 45799999999999999999998877
Q ss_pred ec----cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee
Q 001391 173 VH----SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1088)
Q Consensus 173 ~~----~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 248 (1088)
+. ......+.++.+. ++++.++++|+.|+.|++||++ .....
T Consensus 196 ~~~~~~~~h~~~v~~~~~~--~~~~~~l~sgs~D~~v~~wd~~--------------------------------~~~~~ 241 (380)
T 3iz6_a 196 FGSEFPSGHTADVLSLSIN--SLNANMFISGSCDTTVRLWDLR--------------------------------ITSRA 241 (380)
T ss_dssp ECCCSSSSCCSCEEEEEEC--SSSCCEEEEEETTSCEEEEETT--------------------------------TTCCC
T ss_pred eecccCCCCccCeEEEEee--cCCCCEEEEEECCCeEEEEECC--------------------------------CCCcc
Confidence 63 1223345566652 3478899999999999999987 13456
Q ss_pred eEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeec--eeeeccCcceEEEEEC--CCEEEEE
Q 001391 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNARVWDCCLT--DSFIITA 324 (1088)
Q Consensus 249 ~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~--~~~~~h~~~I~~v~~~--~~~l~sg 324 (1088)
+..+.+|.+.|.+++|+|++++|++++.|++|++||+.++.. ...+.. .....+...|.+++|+ +.+|++|
T Consensus 242 ~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g 316 (380)
T 3iz6_a 242 VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ-----LQVYNREPDRNDNELPIVTSVAFSISGRLLFAG 316 (380)
T ss_dssp CEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEE-----EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEE
T ss_pred eEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcE-----EEEecccccccccccCceEEEEECCCCCEEEEE
Confidence 778899999999999999999999999999999999998643 111110 0011223358999998 7899999
Q ss_pred eCCCcEEEEcC-CCceeEEE----cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 325 GEDCTCRVWGS-DGKQLKMI----KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 325 ~~Dg~i~vWd~-~~~~~~~~----~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+.||.|++||. .++.+..+ .+|.+ .|++++|+|++.+|++|+.||+|++|++.+
T Consensus 317 ~~dg~i~vwd~~~~~~~~~~~~~~~~h~~-~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 317 YSNGDCYVWDTLLAEMVLNLGTLQNSHEG-RISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp CTTSCEEEEETTTCCEEEEECCSCSSCCC-CCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred ECCCCEEEEECCCCceEEEEecccCCCCC-ceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 99999999999 67777776 67887 699999999999999999999999999964
No 20
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.5e-33 Score=319.26 Aligned_cols=296 Identities=14% Similarity=0.156 Sum_probs=223.6
Q ss_pred CCCceEEecCCCc---eeeeeEEEEEeccCCCCCCCCEEEEEe-------CCeEEEEECCCCeeE----EEEeeeCCcce
Q 001391 3 KKDLSEWRLDVGQ---YLGEISALCFVHLPSHLSSLPFLLAGS-------GSQVLLYDLEAGTLI----RPFQVFHGIRL 68 (1088)
Q Consensus 3 d~~i~iWdl~~g~---~~~~V~~v~fs~~pd~~~~~~~laag~-------d~~I~vwd~~tg~~~----~~~~~~~~~~V 68 (1088)
+.....|++.... |.+.|.+|+|| || |++||+|+ |+.|++|+..++... .....|+. .|
T Consensus 25 ~~~~~~w~~p~~~p~~H~~~V~~v~fS--pD----G~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~-~V 97 (357)
T 4g56_B 25 SSKGSAWGRPVTAPACMEVQIGAVRYR--RD----GALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEA-GV 97 (357)
T ss_dssp ---------------CCCSEEEEEEEC--SS----SCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSS-CE
T ss_pred CccccccCCCCCCcccccCCEEEEEEC--CC----CCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCC-CE
Confidence 4557888876554 77899999999 99 99999987 467999998877543 23334444 69
Q ss_pred EEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCC
Q 001391 69 HGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNR 148 (1088)
Q Consensus 69 ~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~ 148 (1088)
.+++|+ |++ .+++++.|++|+|||+..... .........+|.+.|++++|+| +++
T Consensus 98 ~~~~~s-------~d~----~~l~~s~dg~v~lWd~~~~~~-----------~~~~~~~~~~h~~~V~~v~~sp---dg~ 152 (357)
T 4g56_B 98 TDVAWV-------SEK----GILVASDSGAVELWEILEKES-----------LLVNKFAKYEHDDIVKTLSVFS---DGT 152 (357)
T ss_dssp EEEEEE-------TTT----EEEEEETTSCEEEC-------------------CCCCEEECCCSSCEEEEEECS---SSS
T ss_pred EEEEEc-------CCC----CEEEEECCCEEEEeeccccce-----------eEEEeeccCCCCCCEEEEEECC---CCC
Confidence 999999 776 788888899999999986430 0112234458999999999999 999
Q ss_pred EEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCC-cEEEEEecCCeEEEEEeccCccccCCCCCCCccC
Q 001391 149 SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEA-LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHA 227 (1088)
Q Consensus 149 ~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~-~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~ 227 (1088)
+|++|+.|++|++||+.+++.+..+..+.. .+.++++ ++++ .++++++.||.|++||++
T Consensus 153 ~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~-~v~~v~~---s~~~~~~~~s~~~dg~v~~wd~~---------------- 212 (357)
T 4g56_B 153 QAVSGGKDFSVKVWDLSQKAVLKSYNAHSS-EVNCVAA---CPGKDTIFLSCGEDGRILLWDTR---------------- 212 (357)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEE---CTTCSSCEEEEETTSCEEECCTT----------------
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEcCCCC-CEEEEEE---ccCCCceeeeeccCCceEEEECC----------------
Confidence 999999999999999999999998877654 4667766 3444 578999999999999998
Q ss_pred CCCCCCCceeEecccccceeeeE--EEeCCCCCEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceee
Q 001391 228 HGSSSDFKCFKLQDQQHTAVNLF--RLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (1088)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~--~~~gh~~~V~~v~~sp~g-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~ 304 (1088)
+++... .+..|...+.+++|+|++ .+|++++.|+.|++||+.+++ .+. .+
T Consensus 213 -----------------~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~--------~~~--~~ 265 (357)
T 4g56_B 213 -----------------KPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD--------SAQ--TS 265 (357)
T ss_dssp -----------------SSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG--------GCE--EE
T ss_pred -----------------CCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCc--------EeE--EE
Confidence 222222 234677889999999975 688999999999999998853 333 77
Q ss_pred eccCcceEEEEEC--C-CEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEcCC
Q 001391 305 YGHNARVWDCCLT--D-SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDS-LSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 305 ~~h~~~I~~v~~~--~-~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~-dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
.+|...|++++|+ + .+|++|+.|++|+|||+ .++.+ ...+|.+ .|++++|+| ++.+|++++.||+|++|++..
T Consensus 266 ~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~-~~~~H~~-~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 266 AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF-RDLSHRD-FVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE-EECCCSS-CEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe-EECCCCC-CEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 8999999999998 2 57999999999999999 45554 4457888 799999998 789999999999999999943
No 21
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2e-32 Score=317.58 Aligned_cols=288 Identities=18% Similarity=0.364 Sum_probs=236.2
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCC-----------------cceEEEEeccccc
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHG-----------------IRLHGISCNFINC 78 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~-----------------~~V~~i~~s~~~~ 78 (1088)
|.+.|.+++|+ || +++||+|.++.++||++.+++.+..+..+.. ..|.+++|+
T Consensus 63 h~~~V~~v~fs--pd----g~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s---- 132 (393)
T 1erj_A 63 HTSVVCCVKFS--ND----GEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS---- 132 (393)
T ss_dssp CSSCCCEEEEC--TT----SSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC----
T ss_pred CCCEEEEEEEC--CC----CCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEEC----
Confidence 67889999999 99 8999999999999999999999888765432 138999999
Q ss_pred ccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCc
Q 001391 79 TEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNS 158 (1088)
Q Consensus 79 ~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~ 158 (1088)
|+++ .+++++.|++|+|||+.. .+.+..+.+|...|.+++|+| ++++|++|+.|++
T Consensus 133 ---~dg~---~l~s~~~d~~i~iwd~~~---------------~~~~~~~~~h~~~v~~~~~~p---~~~~l~s~s~d~~ 188 (393)
T 1erj_A 133 ---PDGK---FLATGAEDRLIRIWDIEN---------------RKIVMILQGHEQDIYSLDYFP---SGDKLVSGSGDRT 188 (393)
T ss_dssp ---TTSS---EEEEEETTSCEEEEETTT---------------TEEEEEECCCSSCEEEEEECT---TSSEEEEEETTSE
T ss_pred ---CCCC---EEEEEcCCCeEEEEECCC---------------CcEEEEEccCCCCEEEEEEcC---CCCEEEEecCCCc
Confidence 7873 444555699999999874 456778899999999999999 9999999999999
Q ss_pred EEEEEcCCCceEEEeccCCceeEEEEeeecCCC-CCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCcee
Q 001391 159 IRVWDISNSSIILEVHSPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCF 237 (1088)
Q Consensus 159 V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~-~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 237 (1088)
|++||+.+++....+..+.. +.++++ ++ ++.+|++|+.||.|++||+.
T Consensus 189 v~iwd~~~~~~~~~~~~~~~--v~~~~~---~~~~~~~l~~~s~d~~v~iwd~~-------------------------- 237 (393)
T 1erj_A 189 VRIWDLRTGQCSLTLSIEDG--VTTVAV---SPGDGKYIAAGSLDRAVRVWDSE-------------------------- 237 (393)
T ss_dssp EEEEETTTTEEEEEEECSSC--EEEEEE---CSTTCCEEEEEETTSCEEEEETT--------------------------
T ss_pred EEEEECCCCeeEEEEEcCCC--cEEEEE---ECCCCCEEEEEcCCCcEEEEECC--------------------------
Confidence 99999999988777654432 445555 34 78999999999999999998
Q ss_pred EecccccceeeeEEE-------eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCC----CCceeeeceeeec
Q 001391 238 KLQDQQHTAVNLFRL-------VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS----DSIEEVGSSVLYG 306 (1088)
Q Consensus 238 ~~~~~~~~~~~~~~~-------~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~----~~~~~i~~~~~~~ 306 (1088)
++..+..+ .+|...|.+++|+|++++|++++.|++|++||+.+...... ...... ..+.+
T Consensus 238 -------~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~--~~~~~ 308 (393)
T 1erj_A 238 -------TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCE--VTYIG 308 (393)
T ss_dssp -------TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEE--EEEEC
T ss_pred -------CCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcce--EEEec
Confidence 33333333 68999999999999999999999999999999986432100 001122 26789
Q ss_pred cCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcC------CCCEEEEEeCCCCEEEEEc
Q 001391 307 HNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDS------LSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 307 h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~------dg~~l~tg~~Dg~I~iwd~ 377 (1088)
|...|.+++|+ +.+|++|+.|++|++||. +++++..+.+|.+ .|.+++|++ ++++|++|+.||+|++|++
T Consensus 309 h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~-~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 309 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN-SVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC-CEEEEEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence 99999999998 689999999999999999 7889999999998 799999976 6789999999999999998
Q ss_pred C
Q 001391 378 Q 378 (1088)
Q Consensus 378 ~ 378 (1088)
.
T Consensus 388 ~ 388 (393)
T 1erj_A 388 K 388 (393)
T ss_dssp E
T ss_pred c
Confidence 4
No 22
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.3e-31 Score=299.14 Aligned_cols=288 Identities=15% Similarity=0.238 Sum_probs=235.0
Q ss_pred eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCc
Q 001391 55 TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW 134 (1088)
Q Consensus 55 ~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 134 (1088)
+...++.+|.+ .|.+++|+ |+++ .+++++.|++|+|||++. .+.+..+.+|...
T Consensus 4 ~~~~~~~~h~~-~V~~~~fs-------p~~~---~l~s~~~dg~v~lWd~~~---------------~~~~~~~~~~~~~ 57 (304)
T 2ynn_A 4 DIKKTFSNRSD-RVKGIDFH-------PTEP---WVLTTLYSGRVELWNYET---------------QVEVRSIQVTETP 57 (304)
T ss_dssp CCEEEEEEECS-CEEEEEEC-------SSSS---EEEEEETTSEEEEEETTT---------------TEEEEEEECCSSC
T ss_pred eeEEeecCCCC-ceEEEEEC-------CCCC---EEEEEcCCCcEEEEECCC---------------CceeEEeeccCCc
Confidence 34567888777 79999999 7773 555556699999999975 4567788899999
Q ss_pred EEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCc
Q 001391 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (1088)
Q Consensus 135 I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~ 214 (1088)
|.+++|+| ++++|++|+.|++|++||+.+++.+..+..|.. .+.++++ +|++.+|++|+.|++|++||++
T Consensus 58 v~~~~~~~---~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~-~v~~~~~---~~~~~~l~sgs~D~~v~lWd~~--- 127 (304)
T 2ynn_A 58 VRAGKFIA---RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPD-YIRSIAV---HPTKPYVLSGSDDLTVKLWNWE--- 127 (304)
T ss_dssp EEEEEEEG---GGTEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEE---CSSSSEEEEEETTSCEEEEEGG---
T ss_pred EEEEEEeC---CCCEEEEECCCCEEEEEECCCCcEEEEEeCCCC-cEEEEEE---cCCCCEEEEECCCCeEEEEECC---
Confidence 99999999 999999999999999999999999988887654 3667776 6788999999999999999998
Q ss_pred cccCCCCCCCccCCCCCCCCceeEecccccce-eeeEEEeCCCCCEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCcccC
Q 001391 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA-VNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKD 292 (1088)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~~~~gh~~~V~~v~~sp-~g~~l~s~s~Dg~v~iWd~~~~~~~~ 292 (1088)
.. .....+.+|...|.+++|+| ++..|++++.|++|++||+.....
T Consensus 128 ------------------------------~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~-- 175 (304)
T 2ynn_A 128 ------------------------------NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-- 175 (304)
T ss_dssp ------------------------------GTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC--
T ss_pred ------------------------------CCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc--
Confidence 33 45667889999999999999 678999999999999999977532
Q ss_pred CCCceeeeceeeeccCcceEEEEEC----CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEe
Q 001391 293 SDSIEEVGSSVLYGHNARVWDCCLT----DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367 (1088)
Q Consensus 293 ~~~~~~i~~~~~~~h~~~I~~v~~~----~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~ 367 (1088)
... ...+|...+..+.|. +.+|++|+.|++|++||+ +++++..+.+|.. .|.+++|+|++.+|++|+
T Consensus 176 -----~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s 247 (304)
T 2ynn_A 176 -----NFT--LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGS 247 (304)
T ss_dssp -----SEE--EECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEE
T ss_pred -----cce--eccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC-CEEEEEECCCCCEEEEEc
Confidence 111 334677789999986 368999999999999999 7888999999998 799999999999999999
Q ss_pred CCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCe--EEEEecCCeEEEE
Q 001391 368 FDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT--LYIATNHGYLYHT 445 (1088)
Q Consensus 368 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~--ll~~t~~g~i~~~ 445 (1088)
.||+|++||+.+.. ....+..+.+.+.+++++|++. +++++.++.+..+
T Consensus 248 ~Dg~i~iWd~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~ 298 (304)
T 2ynn_A 248 EDGTLKIWNSSTYK-----------------------------VEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298 (304)
T ss_dssp TTSCEEEEETTTCC-----------------------------EEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEE
T ss_pred CCCeEEEEECCCCc-----------------------------eeeeccCCCccEEEEEECCCCCceEEEEecCCceEEE
Confidence 99999999985421 1122334446789999998773 4555555555544
Q ss_pred Ee
Q 001391 446 KL 447 (1088)
Q Consensus 446 ~~ 447 (1088)
.+
T Consensus 299 ~~ 300 (304)
T 2ynn_A 299 SL 300 (304)
T ss_dssp EC
T ss_pred Ee
Confidence 33
No 23
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=9.8e-32 Score=305.89 Aligned_cols=295 Identities=17% Similarity=0.253 Sum_probs=231.0
Q ss_pred CceeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEE--E-eeeCCcceEEEEecccccccCCCccceee
Q 001391 14 GQYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRP--F-QVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (1088)
Q Consensus 14 g~~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~--~-~~~~~~~V~~i~~s~~~~~~~~d~~~~~~ 89 (1088)
++..+.|.+++|+ |+ +++||+|+ |++|+|||+.+++.+.. + .+|.. .|.+++|+ |+++ .
T Consensus 13 ~h~~~~v~~l~~s--p~----g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~-~v~~~~~s-------p~g~---~ 75 (345)
T 3fm0_A 13 AHPDSRCWFLAWN--PA----GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQR-TVRKVAWS-------PCGN---Y 75 (345)
T ss_dssp CSTTSCEEEEEEC--TT----SSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSS-CEEEEEEC-------TTSS---E
T ss_pred CCCCCcEEEEEEC--CC----CCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCC-cEEEEEEC-------CCCC---E
Confidence 4443489999999 99 89999988 79999999998865433 2 34444 79999999 7773 4
Q ss_pred EEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce
Q 001391 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1088)
Q Consensus 90 ~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~ 169 (1088)
+++++.|++++||++.... .+.+..+.+|.+.|.+++|+| ++++|++|+.|++|++||+.++..
T Consensus 76 l~s~s~D~~v~iw~~~~~~-------------~~~~~~~~~h~~~v~~v~~sp---~~~~l~s~s~D~~v~iwd~~~~~~ 139 (345)
T 3fm0_A 76 LASASFDATTCIWKKNQDD-------------FECVTTLEGHENEVKSVAWAP---SGNLLATCSRDKSVWVWEVDEEDE 139 (345)
T ss_dssp EEEEETTSCEEEEEECCC--------------EEEEEEECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEEECTTSC
T ss_pred EEEEECCCcEEEEEccCCC-------------eEEEEEccCCCCCceEEEEeC---CCCEEEEEECCCeEEEEECCCCCC
Confidence 4444569999999988543 467788999999999999999 999999999999999999987643
Q ss_pred ---EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccce
Q 001391 170 ---ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (1088)
Q Consensus 170 ---~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 246 (1088)
+..+..+.. .+.++++ +|++.+|++|+.|+.|++||..+. ..
T Consensus 140 ~~~~~~~~~h~~-~v~~~~~---~p~~~~l~s~s~d~~i~~w~~~~~-------------------------------~~ 184 (345)
T 3fm0_A 140 YECVSVLNSHTQ-DVKHVVW---HPSQELLASASYDDTVKLYREEED-------------------------------DW 184 (345)
T ss_dssp EEEEEEECCCCS-CEEEEEE---CSSSSCEEEEETTSCEEEEEEETT-------------------------------EE
T ss_pred eEEEEEecCcCC-CeEEEEE---CCCCCEEEEEeCCCcEEEEEecCC-------------------------------CE
Confidence 344444433 4566666 678999999999999999998710 22
Q ss_pred eeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCC-------CCceeeeceeeec-cCcceEEEEEC-
Q 001391 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS-------DSIEEVGSSVLYG-HNARVWDCCLT- 317 (1088)
Q Consensus 247 ~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~-------~~~~~i~~~~~~~-h~~~I~~v~~~- 317 (1088)
.....+.+|...|.+++|+|++++|++++.|++|++|+......... ....++. .+.+ |...|++++|+
T Consensus 185 ~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~v~~~~ 262 (345)
T 3fm0_A 185 VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCIC--TLSGFHSRTIYDIAWCQ 262 (345)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEE--EECSSCSSCEEEEEECT
T ss_pred EEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeE--EecCCCCCcEEEEEEec
Confidence 35677899999999999999999999999999999999754321100 0012222 3444 88999999998
Q ss_pred -CCEEEEEeCCCcEEEEcCCCc-----e-----eEEEcccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEEEcCC
Q 001391 318 -DSFIITAGEDCTCRVWGSDGK-----Q-----LKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 318 -~~~l~sg~~Dg~i~vWd~~~~-----~-----~~~~~~h~~~~V~~l~~~~dg-~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+..|++++.|++|++|+.... + .....+|.. .|++++|+|++ .+|++|+.||+|++|++..
T Consensus 263 ~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 263 LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQ-DVNCVAWNPKEPGLLASCSDDGEVAFWKYQR 335 (345)
T ss_dssp TTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSS-CEEEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred CCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccC-cEeEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence 689999999999999997321 1 122357877 79999999997 4999999999999999954
No 24
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.8e-32 Score=304.98 Aligned_cols=290 Identities=16% Similarity=0.180 Sum_probs=236.2
Q ss_pred EEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEE
Q 001391 57 IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVF 136 (1088)
Q Consensus 57 ~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~ 136 (1088)
....++|.+ .|.+++|+|.. .+++ ..+++++.|++|+||++.... ......+.+|...|.
T Consensus 25 ~~~~~~H~~-~V~~v~~~~~~---~~~~---~~l~tgs~D~~v~vW~~~~~~-------------~~~~~~l~gh~~~v~ 84 (321)
T 3ow8_A 25 FKQEQAHDD-AIWSVAWGTNK---KENS---ETVVTGSLDDLVKVWKWRDER-------------LDLQWSLEGHQLGVV 84 (321)
T ss_dssp EEETTSSSS-CEEEEEEC-------------CEEEEEETTSCEEEEEEETTE-------------EEEEEEECCCSSCEE
T ss_pred eeecccCCC-cEEEEEEecCC---CCCC---CEEEEEcCCCCEEEEECCCCC-------------eeeeeeeccCCCCEE
Confidence 344456666 79999999421 0123 134444559999999998543 455667899999999
Q ss_pred EEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccc
Q 001391 137 DVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVA 216 (1088)
Q Consensus 137 ~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~ 216 (1088)
+++|+| ++.++++++.|++|++||+.+++.+..+..+... ++++++ +|++.+|++|+.||.|++|++.
T Consensus 85 ~~~~~~---~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~-~~~~~~---spdg~~l~~g~~dg~v~i~~~~----- 152 (321)
T 3ow8_A 85 SVDISH---TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVD-AWTLAF---SPDSQYLATGTHVGKVNIFGVE----- 152 (321)
T ss_dssp EEEECS---SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTC-CCCEEE---CTTSSEEEEECTTSEEEEEETT-----
T ss_pred EEEECC---CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCcc-EEEEEE---CCCCCEEEEEcCCCcEEEEEcC-----
Confidence 999999 9999999999999999999999988887655432 344554 6899999999999999999998
Q ss_pred cCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCc
Q 001391 217 PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSI 296 (1088)
Q Consensus 217 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~ 296 (1088)
.+.....+..|...|.+++|+|++++|++++.|+.|++||+.++
T Consensus 153 ----------------------------~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~-------- 196 (321)
T 3ow8_A 153 ----------------------------SGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG-------- 196 (321)
T ss_dssp ----------------------------TCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--------
T ss_pred ----------------------------CCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC--------
Confidence 66677788899999999999999999999999999999999885
Q ss_pred eeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEE
Q 001391 297 EEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIK 373 (1088)
Q Consensus 297 ~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~ 373 (1088)
+.+. .+.+|...|.+++|+ +.+|++|+.|++|++||+ .++.+..+.+|.. .|.+++|+|++.+|++++.|++|+
T Consensus 197 ~~~~--~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~ 273 (321)
T 3ow8_A 197 KLLH--TLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS-WVLNVAFCPDDTHFVSSSSDKSVK 273 (321)
T ss_dssp EEEE--EECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEE
T ss_pred cEEE--EEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEE
Confidence 3443 778999999999998 579999999999999999 7788889999998 699999999999999999999999
Q ss_pred EEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCe-EEEEecCCeEEEEE
Q 001391 374 VHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT-LYIATNHGYLYHTK 446 (1088)
Q Consensus 374 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~-ll~~t~~g~i~~~~ 446 (1088)
+||+.... .+..+..|...|.+++|+|++. ++.++.+|.+..|+
T Consensus 274 iwd~~~~~-----------------------------~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 274 VWDVGTRT-----------------------------CVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp EEETTTTE-----------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred EEeCCCCE-----------------------------EEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 99995321 1223345667899999999885 55556778888554
No 25
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-31 Score=303.49 Aligned_cols=297 Identities=19% Similarity=0.250 Sum_probs=220.5
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC--eeEEEE-eeeCCcceEEEEecccccccCCCccceeeEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG--TLIRPF-QVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg--~~~~~~-~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~l 91 (1088)
|.++|.+++|+ |+ +|++|+ |++|+|||+.++ +.+..+ ...+...|.+++|+ |+++ .++
T Consensus 13 h~~~v~~~~~s--~~------~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~s-------p~~~---~la 74 (330)
T 2hes_X 13 YKEKIWSFDFS--QG------ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWR-------PHTS---LLA 74 (330)
T ss_dssp CSSCEEEEEEE--TT------EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEEC-------TTSS---EEE
T ss_pred CCCceeeeccC--CC------EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEEC-------CCCC---EEE
Confidence 66899999999 64 888877 799999999875 455566 33134479999999 7772 444
Q ss_pred EEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC----
Q 001391 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS---- 167 (1088)
Q Consensus 92 a~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~---- 167 (1088)
+++.|++|+||++..... .....+.+..+.+|.+.|.+++|+| ++++|++|+.|++|++||+...
T Consensus 75 s~s~D~~v~iw~~~~~~~--------~~~~~~~~~~~~~h~~~V~~v~~sp---~g~~las~s~D~~v~iwd~~~~~~~~ 143 (330)
T 2hes_X 75 AGSFDSTVSIWAKEESAD--------RTFEMDLLAIIEGHENEVKGVAWSN---DGYYLATCSRDKSVWIWETDESGEEY 143 (330)
T ss_dssp EEETTSCEEEEEC---------------CCCEEEEEEC----CEEEEEECT---TSCEEEEEETTSCEEEEECCTTCCCC
T ss_pred EEeCCCcEEEEEcccCcC--------ccccceeEEEEcCCCCcEEEEEECC---CCCEEEEEeCCCEEEEEeccCCCCCe
Confidence 455699999999864210 0012456778899999999999999 9999999999999999999432
Q ss_pred ceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccccee
Q 001391 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1088)
Q Consensus 168 ~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 247 (1088)
+.+..+..+.. .+.++.+ +|++.+|++|+.|++|++||..+ ....
T Consensus 144 ~~~~~~~~h~~-~v~~v~~---~p~~~~l~s~s~D~~i~iW~~~~-------------------------------~~~~ 188 (330)
T 2hes_X 144 ECISVLQEHSQ-DVKHVIW---HPSEALLASSSYDDTVRIWKDYD-------------------------------DDWE 188 (330)
T ss_dssp EEEEEECCCSS-CEEEEEE---CSSSSEEEEEETTSCEEEEEEET-------------------------------TEEE
T ss_pred EEEEEeccCCC-ceEEEEE---CCCCCEEEEEcCCCeEEEEECCC-------------------------------CCee
Confidence 34555655543 4667766 67899999999999999999871 0235
Q ss_pred eeEEEeCCCCCEEEEEEcCC--CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeec-cCcceEEEEEC-CCEEEE
Q 001391 248 NLFRLVGHEGSIFRIEWSSC--GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG-HNARVWDCCLT-DSFIIT 323 (1088)
Q Consensus 248 ~~~~~~gh~~~V~~v~~sp~--g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~-h~~~I~~v~~~-~~~l~s 323 (1088)
++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+............... .+.+ |...|++++|+ +.+|++
T Consensus 189 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~v~~s~~~~l~s 266 (330)
T 2hes_X 189 CVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEA--ILPDVHKRQVYNVAWGFNGLIAS 266 (330)
T ss_dssp EEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEE--ECCSCCSSCEEEEEECTTSCEEE
T ss_pred EEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEee--ecccccccceEEEEEcCCCEEEE
Confidence 77889999999999999998 678999999999999999764210000001221 3444 89999999998 678999
Q ss_pred EeCCCcEEEEcC-CCc--eeEE-EcccCCCCeEEEEEcC--CCCEEEEEeCCCCEEEEEcC
Q 001391 324 AGEDCTCRVWGS-DGK--QLKM-IKEHIGRGIWRCLYDS--LSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 324 g~~Dg~i~vWd~-~~~--~~~~-~~~h~~~~V~~l~~~~--dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
++.||+|++|+. .++ .+.. +.+|....|++++|+| ++++|++|+.||+|++|+++
T Consensus 267 ~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 267 VGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp EETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred EeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence 999999999998 442 3333 3567653599999999 68899999999999999985
No 26
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.7e-31 Score=311.53 Aligned_cols=284 Identities=17% Similarity=0.256 Sum_probs=240.3
Q ss_pred EEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEE
Q 001391 57 IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVF 136 (1088)
Q Consensus 57 ~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~ 136 (1088)
...+.+|.+ .|.+++|+ |+++ .+++++.|++|+|||+.. .+....+.+|.+.|.
T Consensus 101 ~~~l~gh~~-~V~~~~~~-------p~~~---~l~s~s~Dg~i~vwd~~~---------------~~~~~~l~~h~~~V~ 154 (410)
T 1vyh_C 101 KYALSGHRS-PVTRVIFH-------PVFS---VMVSASEDATIKVWDYET---------------GDFERTLKGHTDSVQ 154 (410)
T ss_dssp SCEEECCSS-CEEEEEEC-------SSSS---EEEEEESSSCEEEEETTT---------------CCCCEEECCCSSCEE
T ss_pred eEeecccCC-cEEEEEEc-------CCCC---EEEEEeCCCeEEEEECCC---------------CcEEEEEeccCCcEE
Confidence 445667666 79999999 7762 555556699999999985 346678889999999
Q ss_pred EEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccc
Q 001391 137 DVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVA 216 (1088)
Q Consensus 137 ~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~ 216 (1088)
+++|+| ++++|++|+.|++|++||+.+++.+..+..+.. .+.++++ +|++.+|++|+.|++|++||+.
T Consensus 155 ~v~~~~---~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~-~V~~v~~---~p~~~~l~s~s~D~~i~~wd~~----- 222 (410)
T 1vyh_C 155 DISFDH---SGKLLASCSADMTIKLWDFQGFECIRTMHGHDH-NVSSVSI---MPNGDHIVSASRDKTIKMWEVQ----- 222 (410)
T ss_dssp EEEECT---TSSEEEEEETTSCCCEEETTSSCEEECCCCCSS-CEEEEEE---CSSSSEEEEEETTSEEEEEETT-----
T ss_pred EEEEcC---CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCC-CEEEEEE---eCCCCEEEEEeCCCeEEEEECC-----
Confidence 999999 999999999999999999999998888876654 4667776 6789999999999999999998
Q ss_pred cCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCc
Q 001391 217 PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSI 296 (1088)
Q Consensus 217 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~ 296 (1088)
++..+..+.+|...|.++.|+|++.++++++.|++|++||+.++.
T Consensus 223 ----------------------------~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~------- 267 (410)
T 1vyh_C 223 ----------------------------TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE------- 267 (410)
T ss_dssp ----------------------------TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------
T ss_pred ----------------------------CCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-------
Confidence 677888899999999999999999999999999999999998853
Q ss_pred eeeeceeeeccCcceEEEEECC----------------------CEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEE
Q 001391 297 EEVGSSVLYGHNARVWDCCLTD----------------------SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWR 353 (1088)
Q Consensus 297 ~~i~~~~~~~h~~~I~~v~~~~----------------------~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~ 353 (1088)
... .+.+|...|.+++|++ .+|++|+.|++|++||+ +++++..+.+|.. .|++
T Consensus 268 -~~~--~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~-~v~~ 343 (410)
T 1vyh_C 268 -CKA--ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN-WVRG 343 (410)
T ss_dssp -EEE--EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEE
T ss_pred -eee--EecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC-cEEE
Confidence 332 6788999999999973 47999999999999999 7889999999998 7999
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCe-
Q 001391 354 CLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT- 432 (1088)
Q Consensus 354 l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~- 432 (1088)
++|+|++++|++|+.||+|++||+.... .+..+..|...|.+++|+|++.
T Consensus 344 v~~~~~g~~l~s~s~D~~i~vwd~~~~~-----------------------------~~~~~~~h~~~v~~l~~~~~~~~ 394 (410)
T 1vyh_C 344 VLFHSGGKFILSCADDKTLRVWDYKNKR-----------------------------CMKTLNAHEHFVTSLDFHKTAPY 394 (410)
T ss_dssp EEECSSSSCEEEEETTTEEEEECCTTSC-----------------------------CCEEEECCSSCEEEEEECSSSSC
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCc-----------------------------eEEEEcCCCCcEEEEEEcCCCCE
Confidence 9999999999999999999999985321 1122345667899999999885
Q ss_pred EEEEecCCeEEEEE
Q 001391 433 LYIATNHGYLYHTK 446 (1088)
Q Consensus 433 ll~~t~~g~i~~~~ 446 (1088)
++.++.+|.|..|+
T Consensus 395 l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 395 VVTGSVDQTVKVWE 408 (410)
T ss_dssp EEEEETTSEEEEEC
T ss_pred EEEEeCCCcEEEEe
Confidence 45556788887543
No 27
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.5e-31 Score=296.62 Aligned_cols=280 Identities=15% Similarity=0.286 Sum_probs=236.9
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.++|++++|+ |+ +++|++|+ |+.|+|||..+++.+..+..|.. .|.+++|+ |+++ .+++++
T Consensus 22 h~~~v~~~~~s--~~----~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~-~v~~~~~~-------~~~~---~l~s~~ 84 (312)
T 4ery_A 22 HTKAVSSVKFS--PN----GEWLASSSADKLIKIWGAYDGKFEKTISGHKL-GISDVAWS-------SDSN---LLVSAS 84 (312)
T ss_dssp CSSCEEEEEEC--TT----SSEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEEC-------TTSS---EEEEEE
T ss_pred cCCcEEEEEEC--CC----CCEEEEeeCCCeEEEEeCCCcccchhhccCCC-ceEEEEEc-------CCCC---EEEEEC
Confidence 66899999999 99 89999988 79999999999999999988766 79999999 7773 555556
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.|+.|++||+.. .+.+..+.+|...|.+++|+| ++++|++|+.|++|++||+.+++.+..+.
T Consensus 85 ~d~~i~vwd~~~---------------~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 146 (312)
T 4ery_A 85 DDKTLKIWDVSS---------------GKCLKTLKGHSNYVFCCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLP 146 (312)
T ss_dssp TTSEEEEEETTT---------------CCEEEEEECCSSCEEEEEECS---SSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred CCCEEEEEECCC---------------CcEEEEEcCCCCCEEEEEEcC---CCCEEEEEeCCCcEEEEECCCCEEEEEec
Confidence 699999999985 356778889999999999999 99999999999999999999999888887
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE-e
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-V 253 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 253 (1088)
.+.. .+.++.+ ++++.++++|+.||.|++||+. .++.+..+ .
T Consensus 147 ~~~~-~v~~~~~---~~~~~~l~~~~~d~~i~~wd~~---------------------------------~~~~~~~~~~ 189 (312)
T 4ery_A 147 AHSD-PVSAVHF---NRDGSLIVSSSYDGLCRIWDTA---------------------------------SGQCLKTLID 189 (312)
T ss_dssp CCSS-CEEEEEE---CTTSSEEEEEETTSCEEEEETT---------------------------------TCCEEEEECC
T ss_pred CCCC-cEEEEEE---cCCCCEEEEEeCCCcEEEEECC---------------------------------CCceeeEEec
Confidence 6654 3556665 6789999999999999999998 45555554 3
Q ss_pred CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEE--EEEC---CCEEEEEeCCC
Q 001391 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD--CCLT---DSFIITAGEDC 328 (1088)
Q Consensus 254 gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~--v~~~---~~~l~sg~~Dg 328 (1088)
.|...+..++|+|+++++++++.|+.|++||+.+++ .+. .+.+|...+.+ ..+. +.+|++|+.||
T Consensus 190 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~--~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg 259 (312)
T 4ery_A 190 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--------CLK--TYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259 (312)
T ss_dssp SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTE--------EEE--EECSSCCSSSCCCEEEECSSSCEEEECCTTS
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCc--------EEE--EEEecCCceEEEEEEEEeCCCcEEEEECCCC
Confidence 567789999999999999999999999999998853 333 55666554322 2232 67899999999
Q ss_pred cEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEe--CCCCEEEEEcC
Q 001391 329 TCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG--FDSAIKVHQFQ 378 (1088)
Q Consensus 329 ~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~--~Dg~I~iwd~~ 378 (1088)
.|++||+ +++.+..+.+|.. .|.+++|+|++++|++++ .|++|++|+.+
T Consensus 260 ~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 260 LVYIWNLQTKEIVQKLQGHTD-VVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CEEEEETTTCCEEEEECCCSS-CEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEEEECCCchhhhhhhccCC-cEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 9999999 7888899999988 799999999999999997 69999999863
No 28
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.6e-31 Score=297.69 Aligned_cols=281 Identities=15% Similarity=0.227 Sum_probs=226.2
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCC-----CeeEEEEeeeCCcceEEEEecccccccCCCccceee
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA-----GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t-----g~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~ 89 (1088)
|.++|++|+|+ |+ .+.+|++|+ |++|++||+.+ +..+..+.+|.. .|.+++|+ |+++ .
T Consensus 16 H~~~V~~l~~~--~~---~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~-~v~~~~~s-------~dg~---~ 79 (319)
T 3frx_A 16 HNGWVTSLATS--AG---QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH-IVQDCTLT-------ADGA---Y 79 (319)
T ss_dssp CSSCEEEEEEC--SS---CTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSS-CEEEEEEC-------TTSS---E
T ss_pred ccceEEEEEcc--CC---CccEEEEecCCccEEEecCCCCCccccccceEEeCCcc-cEEEEEEC-------CCCC---E
Confidence 67999999999 86 247888888 79999999864 356778888776 79999999 7773 4
Q ss_pred EEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce
Q 001391 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1088)
Q Consensus 90 ~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~ 169 (1088)
+++++.|++|+|||+.. .+.+..+.+|...|.+++|+| ++.+|++|+.|++|++||+. ++.
T Consensus 80 l~s~s~D~~v~~wd~~~---------------~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~s~D~~i~vwd~~-~~~ 140 (319)
T 3frx_A 80 ALSASWDKTLRLWDVAT---------------GETYQRFVGHKSDVMSVDIDK---KASMIISGSRDKTIKVWTIK-GQC 140 (319)
T ss_dssp EEEEETTSEEEEEETTT---------------TEEEEEEECCSSCEEEEEECT---TSCEEEEEETTSCEEEEETT-SCE
T ss_pred EEEEeCCCEEEEEECCC---------------CCeeEEEccCCCcEEEEEEcC---CCCEEEEEeCCCeEEEEECC-CCe
Confidence 55556699999999985 456778899999999999999 99999999999999999996 455
Q ss_pred EEEeccCCceeEEEEeeecCC---CCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccce
Q 001391 170 ILEVHSPERCLLYSMKLWGDN---LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (1088)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~s---~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 246 (1088)
+..+..+.. .+.++.+.+.. .++..+++++.|+.|++||+. ..
T Consensus 141 ~~~~~~h~~-~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~---------------------------------~~ 186 (319)
T 3frx_A 141 LATLLGHND-WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN---------------------------------QF 186 (319)
T ss_dssp EEEECCCSS-CEEEEEECCC------CCEEEEEETTSCEEEEETT---------------------------------TT
T ss_pred EEEEeccCC-cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECC---------------------------------cc
Confidence 666665543 35566664322 256689999999999999998 66
Q ss_pred eeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEE
Q 001391 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA 324 (1088)
Q Consensus 247 ~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg 324 (1088)
.....+.+|...|.+++|+|++++|++++.|++|++||+.+++ .+. .+. +...|.+++|+ +.+++++
T Consensus 187 ~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~--------~~~--~~~-~~~~v~~~~~sp~~~~la~~ 255 (319)
T 3frx_A 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK--------AMY--TLS-AQDEVFSLAFSPNRYWLAAA 255 (319)
T ss_dssp EEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE--------EEE--EEE-CCSCEEEEEECSSSSEEEEE
T ss_pred hhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--------EEE--Eec-CCCcEEEEEEcCCCCEEEEE
Confidence 7778889999999999999999999999999999999998853 332 333 44689999999 4566666
Q ss_pred eCCCcEEEEcCC-CceeEEEcc--------cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 325 GEDCTCRVWGSD-GKQLKMIKE--------HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 325 ~~Dg~i~vWd~~-~~~~~~~~~--------h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
+ +..+++|+++ +..+..+.. |.. .+.+++|+|+|++|++|+.||.|++|++.
T Consensus 256 ~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 256 T-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEP-HAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp E-TTEEEEEEETTEEEEEEECCCCTTCCGGGCC-CEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred c-CCCcEEEEeCcCeeeeccCccccccccCcCc-ceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 5 5569999994 444444432 344 69999999999999999999999999984
No 29
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.7e-31 Score=299.54 Aligned_cols=321 Identities=17% Similarity=0.230 Sum_probs=238.8
Q ss_pred cceeeeccCCCC-cEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEE--EeccCCceeEEEEeeecCCCCCcEEEE
Q 001391 122 LSLVQSLPRLSH-WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL--EVHSPERCLLYSMKLWGDNLEALRIAS 198 (1088)
Q Consensus 122 ~~~~~~l~~h~~-~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~--~~~~~~~~~~~s~~~~~~s~~~~~l~s 198 (1088)
.+++..+.+|.+ .|++++|+| ++++||+|+.|++|+|||+.++.... .+.......+.++++ +|++.+|++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp---~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~---sp~g~~l~s 78 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNP---AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAW---SPCGNYLAS 78 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECT---TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEE---CTTSSEEEE
T ss_pred EEEeeeecCCCCCcEEEEEECC---CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEE---CCCCCEEEE
Confidence 567888999998 999999999 99999999999999999998876442 232333445777777 688999999
Q ss_pred EecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCC
Q 001391 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR 278 (1088)
Q Consensus 199 g~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg 278 (1088)
|+.|++|++|+.... ....+..+.+|.+.|.+++|+|++++|++++.|+
T Consensus 79 ~s~D~~v~iw~~~~~-------------------------------~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~ 127 (345)
T 3fm0_A 79 ASFDATTCIWKKNQD-------------------------------DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK 127 (345)
T ss_dssp EETTSCEEEEEECCC--------------------------------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EECCCcEEEEEccCC-------------------------------CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCC
Confidence 999999999998710 2356778899999999999999999999999999
Q ss_pred cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCc--eeEEEcccCCCCeEE
Q 001391 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGK--QLKMIKEHIGRGIWR 353 (1088)
Q Consensus 279 ~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~--~~~~~~~h~~~~V~~ 353 (1088)
+|++||+..... ...+. .+.+|...|.+++|+ +.+|++|+.|++|++|+. .++ +...+.+|.. .|++
T Consensus 128 ~v~iwd~~~~~~-----~~~~~--~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~-~v~~ 199 (345)
T 3fm0_A 128 SVWVWEVDEEDE-----YECVS--VLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHES-TVWS 199 (345)
T ss_dssp CEEEEEECTTSC-----EEEEE--EECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEE
T ss_pred eEEEEECCCCCC-----eEEEE--EecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCC-ceEE
Confidence 999999987533 23343 778999999999998 579999999999999999 443 4567889988 7999
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEEcCCC-CCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCe
Q 001391 354 CLYDSLSSLLVTAGFDSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT 432 (1088)
Q Consensus 354 l~~~~dg~~l~tg~~Dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ 432 (1088)
++|+|++++|++|+.|++|++|+.... ..+ .+.+....+...
T Consensus 200 l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~-------------------------------------~~~~~~~~~~~~ 242 (345)
T 3fm0_A 200 LAFDPSGQRLASCSDDRTVRIWRQYLPGNEQ-------------------------------------GVACSGSDPSWK 242 (345)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEEECTTCTT-------------------------------------CCCCC---CEEE
T ss_pred EEECCCCCEEEEEeCCCeEEEeccccCCCCc-------------------------------------cceeeccCCccc
Confidence 999999999999999999999997311 000 000000000000
Q ss_pred EEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcc--e
Q 001391 433 LYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQ--L 510 (1088)
Q Consensus 433 ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~--~ 510 (1088)
. .....+.+...+.++++.+. +..+++++.|+.|++|+......... .
T Consensus 243 ~----------------------~~~~~~~h~~~v~~v~~~~~--------~~~l~s~~~d~~i~vw~~~~~~~~~~~~~ 292 (345)
T 3fm0_A 243 C----------------------ICTLSGFHSRTIYDIAWCQL--------TGALATACGDDAIRVFQEDPNSDPQQPTF 292 (345)
T ss_dssp E----------------------EEEECSSCSSCEEEEEECTT--------TCCEEEEETTSCEEEEEECTTSCTTSCCE
T ss_pred e----------------------eEEecCCCCCcEEEEEEecC--------CCEEEEEeCCCeEEEEEeCCCCCcceeeE
Confidence 0 01112333556777777544 47899999999999999976543222 2
Q ss_pred eeeeeeeccccceeeeEEEeecCCC-eEEEEECCCCeEEEEecCCCC
Q 001391 511 SFTFTWSAGIERQLLGTYWCKSLGH-RFIFTADPKGRLKLWQLCDPF 556 (1088)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~s~dg-~~L~s~~~dg~i~vwd~~~~~ 556 (1088)
.+.......+...+.. .+++|++ .+|++++.||.|++|++...+
T Consensus 293 ~~~~~~~~~h~~~V~~--v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 293 SLTAHLHQAHSQDVNC--VAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp EEEEEETTSSSSCEEE--EEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred EEEeeecccccCcEeE--eEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 2222222233333433 4688887 599999999999999998653
No 30
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-31 Score=309.00 Aligned_cols=348 Identities=17% Similarity=0.167 Sum_probs=260.9
Q ss_pred ceEEecCCCc-------eeeeeEEEEEeccCCCCCCCC-EEEEEe-CCeEEEEEC----CCCe------eEEEEee----
Q 001391 6 LSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLP-FLLAGS-GSQVLLYDL----EAGT------LIRPFQV---- 62 (1088)
Q Consensus 6 i~iWdl~~g~-------~~~~V~~v~fs~~pd~~~~~~-~laag~-d~~I~vwd~----~tg~------~~~~~~~---- 62 (1088)
+.+|++.... |.++|++++|+ |+ ++ +||+|+ |+.|+|||+ .+++ ....+..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 1r5m_A 27 DSSDDLDGFVKILKEIVKLDNIVSSTWN--PL----DESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFAL 100 (425)
T ss_dssp -------CCCEECEEEEECSCCSEEEEC--SS----CTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCC
T ss_pred cccccchhhhhheeeeeccCceEEEEEC--CC----CCcEEEEecCCceEEEEEEecccCCccccccccccccccccccc
Confidence 5677776654 45889999999 99 78 999988 699999999 8888 4555543
Q ss_pred e-----CCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEE
Q 001391 63 F-----HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFD 137 (1088)
Q Consensus 63 ~-----~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~ 137 (1088)
+ +...|.+++|+ |+++ .+++++.|+.|++|+.. .+.+..+.+|...|.+
T Consensus 101 ~~~~~~~~~~v~~~~~s-------~~~~---~l~~~~~dg~i~i~~~~----------------~~~~~~~~~~~~~v~~ 154 (425)
T 1r5m_A 101 SASSGKTTNQVTCLAWS-------HDGN---SIVTGVENGELRLWNKT----------------GALLNVLNFHRAPIVS 154 (425)
T ss_dssp C------CBCEEEEEEC-------TTSS---EEEEEETTSCEEEEETT----------------SCEEEEECCCCSCEEE
T ss_pred cccccCCCCceEEEEEc-------CCCC---EEEEEeCCCeEEEEeCC----------------CCeeeeccCCCccEEE
Confidence 1 34479999999 7773 45555669999999933 4567788899999999
Q ss_pred EEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCcee--------------EEEEeeecCCCCCcEEEEEecCC
Q 001391 138 VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCL--------------LYSMKLWGDNLEALRIASGTIYN 203 (1088)
Q Consensus 138 v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~--------------~~s~~~~~~s~~~~~l~sg~~dg 203 (1088)
++|+| ++++|++++.|+.|++||+.+++.+..+..+.... +.++.+ .++ ..+++++.+|
T Consensus 155 ~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~g 227 (425)
T 1r5m_A 155 VKWNK---DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEW---VDD-DKFVIPGPKG 227 (425)
T ss_dssp EEECT---TSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEE---EET-TEEEEECGGG
T ss_pred EEECC---CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEE---cCC-CEEEEEcCCC
Confidence 99999 99999999999999999999998888776543320 333444 233 4688999999
Q ss_pred eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEE
Q 001391 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIW 283 (1088)
Q Consensus 204 ~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iW 283 (1088)
.|++||+. ....+..+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 228 ~i~~~d~~---------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 274 (425)
T 1r5m_A 228 AIFVYQIT---------------------------------EKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274 (425)
T ss_dssp CEEEEETT---------------------------------CSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred eEEEEEcC---------------------------------CCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 99999998 566777888999999999999999999999999999999
Q ss_pred EcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC
Q 001391 284 EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS 361 (1088)
Q Consensus 284 d~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~ 361 (1088)
|+.+.+. +. .+.+|...|.+++|+ +.++++++.|+.|++||+ +++.+..+..|.. +|.+++|+|+++
T Consensus 275 d~~~~~~--------~~--~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~s~~~~ 343 (425)
T 1r5m_A 275 HGGNGNS--------QN--CFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGV-PIFAGRISQDGQ 343 (425)
T ss_dssp CSSSBSC--------SE--EECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTC-CEEEEEECTTSS
T ss_pred ECCCCcc--------ce--EecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCc-cEEEEEEcCCCC
Confidence 9988532 32 667899999999998 349999999999999999 7888888988887 799999999999
Q ss_pred EEEEEeCCCCEEEEEcCCCC--CCcccCCccccccCCCcceEEeeeCCCccceeeccCCCC--ceEEEEeccCCeEE-EE
Q 001391 362 LLVTAGFDSAIKVHQFQAFL--PGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSE--YVRCLHLTSEDTLY-IA 436 (1088)
Q Consensus 362 ~l~tg~~Dg~I~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~V~~l~~s~~~~ll-~~ 436 (1088)
+|++++.||.|++|++.... ...+.+.. ...+. +.....+..+..+.. .|.+++|+|++.++ ++
T Consensus 344 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~--------~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 412 (425)
T 1r5m_A 344 KYAVAFMDGQVNVYDLKKLNSKSRSLYGNR--------DGILN---PLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVA 412 (425)
T ss_dssp EEEEEETTSCEEEEECHHHHC-------------------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEE
T ss_pred EEEEEECCCeEEEEECCCCccceeeeeccc--------ccccC---cccchhhhhhcCcccCCceEEEEccCCCceEEEE
Confidence 99999999999999994311 11111110 00000 111123445556654 89999999998655 66
Q ss_pred ecCCeEEEEEe
Q 001391 437 TNHGYLYHTKL 447 (1088)
Q Consensus 437 t~~g~i~~~~~ 447 (1088)
+.+|.+..|++
T Consensus 413 ~~dg~i~iw~~ 423 (425)
T 1r5m_A 413 YSLQEGSVVAI 423 (425)
T ss_dssp ESSSCCEEEEC
T ss_pred ecCceEEEEee
Confidence 78888886654
No 31
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7e-31 Score=295.28 Aligned_cols=290 Identities=17% Similarity=0.246 Sum_probs=233.0
Q ss_pred cceeeeccCCCCcEEEEEEecccCCC-CEEEEEEcCCcEEEEEcCCC-----ceEEEeccCCceeEEEEeeecCCCCCcE
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNS-----SIILEVHSPERCLLYSMKLWGDNLEALR 195 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~-~~lasgs~Dg~V~iWd~~~~-----~~~~~~~~~~~~~~~s~~~~~~s~~~~~ 195 (1088)
+.+..++.+|.++|++++|+| ++ ++|++|+.|++|++|++... ..+..+.+|.. .+.++++ ++++.+
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~---~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~-~v~~~~~---s~dg~~ 79 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSA---GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH-IVQDCTL---TADGAY 79 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECS---SCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSS-CEEEEEE---CTTSSE
T ss_pred EEEEEEEccccceEEEEEccC---CCccEEEEecCCccEEEecCCCCCccccccceEEeCCcc-cEEEEEE---CCCCCE
Confidence 567788999999999999998 65 79999999999999998643 23455655554 3556666 688999
Q ss_pred EEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEE
Q 001391 196 IASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (1088)
Q Consensus 196 l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s 275 (1088)
|++|+.|++|++||+. +++.+..+.+|...|.+++|+|++.++++++
T Consensus 80 l~s~s~D~~v~~wd~~---------------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 126 (319)
T 3frx_A 80 ALSASWDKTLRLWDVA---------------------------------TGETYQRFVGHKSDVMSVDIDKKASMIISGS 126 (319)
T ss_dssp EEEEETTSEEEEEETT---------------------------------TTEEEEEEECCSSCEEEEEECTTSCEEEEEE
T ss_pred EEEEeCCCEEEEEECC---------------------------------CCCeeEEEccCCCcEEEEEEcCCCCEEEEEe
Confidence 9999999999999998 7778889999999999999999999999999
Q ss_pred CCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC--------CEEEEEeCCCcEEEEcC-CCceeEEEccc
Q 001391 276 DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--------SFIITAGEDCTCRVWGS-DGKQLKMIKEH 346 (1088)
Q Consensus 276 ~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~--------~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h 346 (1088)
.|++|++||+... .+. .+.+|...|.++++.+ ..+++++.|++|++||+ .++....+.+|
T Consensus 127 ~D~~i~vwd~~~~---------~~~--~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h 195 (319)
T 3frx_A 127 RDKTIKVWTIKGQ---------CLA--TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 195 (319)
T ss_dssp TTSCEEEEETTSC---------EEE--EECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCeEEEEECCCC---------eEE--EEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCC
Confidence 9999999999753 333 7789999999999973 27999999999999999 67778889999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEE
Q 001391 347 IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLH 426 (1088)
Q Consensus 347 ~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 426 (1088)
.. +|.+++|+|++++|++|+.||.|++||+.... .+..+ . ....|.+++
T Consensus 196 ~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~-----------------~~~~~------------~-~~~~v~~~~ 244 (319)
T 3frx_A 196 NS-NINTLTASPDGTLIASAGKDGEIMLWNLAAKK-----------------AMYTL------------S-AQDEVFSLA 244 (319)
T ss_dssp CS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTE-----------------EEEEE------------E-CCSCEEEEE
T ss_pred CC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------------EEEEe------------c-CCCcEEEEE
Confidence 88 79999999999999999999999999995421 11111 1 124689999
Q ss_pred eccCCeEEEEecCCeEEEEEeccCCcceeEEeee------ecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEE
Q 001391 427 LTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQ------VSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (1088)
Q Consensus 427 ~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~------~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~ 500 (1088)
|+|++.+++++.++.+..+++..... ...+.. ..+...+.++++.+ ++++|++|+.||.|++|+
T Consensus 245 ~sp~~~~la~~~~~~i~v~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~sp--------dg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 245 FSPNRYWLAAATATGIKVFSLDPQYL--VDDLRPEFAGYSKAAEPHAVSLAWSA--------DGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp ECSSSSEEEEEETTEEEEEEETTEEE--EEEECCCCTTCCGGGCCCEEEEEECT--------TSSEEEEEETTSCEEEEE
T ss_pred EcCCCCEEEEEcCCCcEEEEeCcCee--eeccCccccccccCcCcceeEEEECC--------CCCEEEEeecCceEEEEE
Confidence 99999988888777777665533211 111110 11234577777754 458999999999999999
Q ss_pred EcC
Q 001391 501 VVG 503 (1088)
Q Consensus 501 ~~~ 503 (1088)
+.+
T Consensus 315 ~~t 317 (319)
T 3frx_A 315 VMT 317 (319)
T ss_dssp EEE
T ss_pred Eee
Confidence 875
No 32
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.3e-30 Score=296.36 Aligned_cols=282 Identities=14% Similarity=0.212 Sum_probs=220.9
Q ss_pred eeeeeEEEEE-----eccC-CCCCCCCEEEEEe-CCeEEEEECCC-------CeeEEEEeeeCCcceEEEEecccccccC
Q 001391 16 YLGEISALCF-----VHLP-SHLSSLPFLLAGS-GSQVLLYDLEA-------GTLIRPFQVFHGIRLHGISCNFINCTEG 81 (1088)
Q Consensus 16 ~~~~V~~v~f-----s~~p-d~~~~~~~laag~-d~~I~vwd~~t-------g~~~~~~~~~~~~~V~~i~~s~~~~~~~ 81 (1088)
|.++|++++| + | + +++|++|+ |++|+|||+.+ +..+..+.+|.. .|.+++|+
T Consensus 20 H~~~V~~~~~~~s~~~--~~d----~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~-~V~~~~~~------- 85 (343)
T 2xzm_R 20 HSDWVTSIVAGFSQKE--NED----SPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNH-FVSDLALS------- 85 (343)
T ss_dssp CSSCEEEEEECCCSST--TCC----CCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSS-CEEEEEEC-------
T ss_pred chhhhhheeeEEEeec--CCC----CCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCC-ceEEEEEC-------
Confidence 6789999999 5 5 5 78999988 79999999875 345667777766 79999999
Q ss_pred CCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEE
Q 001391 82 SVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRV 161 (1088)
Q Consensus 82 ~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~i 161 (1088)
|++. .+++++.|++|+|||+.. .+.+..+.+|.+.|.+++|+| ++++|++|+.|++|++
T Consensus 86 ~~~~---~l~s~s~D~~v~lwd~~~---------------~~~~~~~~~h~~~v~~v~~sp---~~~~l~s~~~d~~i~~ 144 (343)
T 2xzm_R 86 QENC---FAISSSWDKTLRLWDLRT---------------GTTYKRFVGHQSEVYSVAFSP---DNRQILSAGAEREIKL 144 (343)
T ss_dssp SSTT---EEEEEETTSEEEEEETTS---------------SCEEEEEECCCSCEEEEEECS---STTEEEEEETTSCEEE
T ss_pred CCCC---EEEEEcCCCcEEEEECCC---------------CcEEEEEcCCCCcEEEEEECC---CCCEEEEEcCCCEEEE
Confidence 7762 445556699999999985 356778889999999999999 9999999999999999
Q ss_pred EEcCCCceEEEec--cCCceeEEEEeeecCC-------CCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCC
Q 001391 162 WDISNSSIILEVH--SPERCLLYSMKLWGDN-------LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (1088)
Q Consensus 162 Wd~~~~~~~~~~~--~~~~~~~~s~~~~~~s-------~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~ 232 (1088)
||+... ...... ......+.++++.+.. +.+.++++++.||.|++||..
T Consensus 145 wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--------------------- 202 (343)
T 2xzm_R 145 WNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--------------------- 202 (343)
T ss_dssp EESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT---------------------
T ss_pred EeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC---------------------
Confidence 999743 333322 1223345666663321 223789999999999999954
Q ss_pred CCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceE
Q 001391 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312 (1088)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~ 312 (1088)
......+.+|...|.+++|+|++++|++++.|+.|++||+..... .. ....+...|.
T Consensus 203 -------------~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~-------~~---~~~~~~~~v~ 259 (343)
T 2xzm_R 203 -------------FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY-------PQ---REFDAGSTIN 259 (343)
T ss_dssp -------------TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSS-------CS---EEEECSSCEE
T ss_pred -------------CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcc-------cc---eeecCCCcEE
Confidence 455677889999999999999999999999999999999954321 11 2234556799
Q ss_pred EEEEC-CCEEEEEeCCCcEEEEcC-CCceeE--EEc-----------ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 313 DCCLT-DSFIITAGEDCTCRVWGS-DGKQLK--MIK-----------EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 313 ~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~--~~~-----------~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
+++|+ +..+++++.|+.+++|++ +++... .+. +|.. .|++++|+|++++|++|+.||.|++|++
T Consensus 260 ~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~sg~~Dg~v~~w~~ 338 (343)
T 2xzm_R 260 QIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNP-QCTSLAWNALGKKLFAGFTDGVIRTFSF 338 (343)
T ss_dssp EEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCC-CEEEEEECSSSCCEEEEETTSEEEEEEE
T ss_pred EEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCC-ceEEEEECCCCCeEEEecCCceEEEEEE
Confidence 99999 344555677899999998 444322 333 5666 6999999999999999999999999998
Q ss_pred C
Q 001391 378 Q 378 (1088)
Q Consensus 378 ~ 378 (1088)
.
T Consensus 339 ~ 339 (343)
T 2xzm_R 339 E 339 (343)
T ss_dssp E
T ss_pred E
Confidence 4
No 33
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.3e-30 Score=291.65 Aligned_cols=292 Identities=13% Similarity=0.211 Sum_probs=236.1
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEec
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~ 201 (1088)
.+....+.+|.+.|++++|+| ++++|++|+.|++|++||+.+++.+..+..+.. .+.++++ +|++.+|++|+.
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~---d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~-~v~~~~~---s~~~~~l~s~~~ 117 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGT---DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSS-WVMTCAY---APSGNYVACGGL 117 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECT---TSSEEEEEETTTEEEEEETTTCCEEEEEECSSS-CEEEEEE---CTTSSEEEEEET
T ss_pred chhheeecCCCCceEEEEECC---CCCEEEEEeCCCcEEEEECCCCCcceEeecCCc-cEEEEEE---CCCCCEEEEEeC
Confidence 566788999999999999999 999999999999999999999998888776654 3556666 688999999999
Q ss_pred CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEE
Q 001391 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSAR 281 (1088)
Q Consensus 202 dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~ 281 (1088)
|+.|++|++.+.+ ........+.+|.+.|.++.|++++. +++++.|++|+
T Consensus 118 d~~v~iw~~~~~~-----------------------------~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~ 167 (340)
T 1got_B 118 DNICSIYNLKTRE-----------------------------GNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCA 167 (340)
T ss_dssp TCEEEEEETTTCS-----------------------------BSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEE
T ss_pred CCeEEEEECccCC-----------------------------CcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEE
Confidence 9999999987211 02245667889999999999998875 89999999999
Q ss_pred EEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcC
Q 001391 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDS 358 (1088)
Q Consensus 282 iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~ 358 (1088)
+||+.++ +.+. .+.+|...|.+++|+ +.++++|+.|++|++||+ +++.+..+.+|.. .|.+++|+|
T Consensus 168 ~wd~~~~--------~~~~--~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p 236 (340)
T 1got_B 168 LWDIETG--------QQTT--TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES-DINAICFFP 236 (340)
T ss_dssp EEETTTT--------EEEE--EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS-CEEEEEECT
T ss_pred EEECCCC--------cEEE--EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcC-CEEEEEEcC
Confidence 9999885 3343 778999999999998 579999999999999999 7888999999998 799999999
Q ss_pred CCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEE-Ee
Q 001391 359 LSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI-AT 437 (1088)
Q Consensus 359 dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~-~t 437 (1088)
++++|++|+.||+|++||++... .+.... ...+...|.+++|+|++.+++ ++
T Consensus 237 ~~~~l~s~s~d~~v~iwd~~~~~-----------------~~~~~~----------~~~~~~~v~~~~~s~~g~~l~~g~ 289 (340)
T 1got_B 237 NGNAFATGSDDATCRLFDLRADQ-----------------ELMTYS----------HDNIICGITSVSFSKSGRLLLAGY 289 (340)
T ss_dssp TSSEEEEEETTSCEEEEETTTTE-----------------EEEEEC----------CTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCEEEEEcCCCcEEEEECCCCc-----------------EEEEEc----------cCCcccceEEEEECCCCCEEEEEC
Confidence 99999999999999999995421 011110 011224689999999986554 56
Q ss_pred cCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEE
Q 001391 438 NHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (1088)
Q Consensus 438 ~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~ 500 (1088)
.+|.+..|++.. ......+.+| ..+|.++++.++ +.+|++|+.||.|++|+
T Consensus 290 ~d~~i~vwd~~~---~~~~~~~~~h-~~~v~~~~~s~d--------g~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 290 DDFNCNVWDALK---ADRAGVLAGH-DNRVSCLGVTDD--------GMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTSEEEEEETTT---CCEEEEEECC-SSCEEEEEECTT--------SSCEEEEETTSCEEEEC
T ss_pred CCCeEEEEEccc---CcEeeEeecC-CCcEEEEEEcCC--------CCEEEEEcCCccEEecC
Confidence 778888665433 3323344555 568999988554 48999999999999995
No 34
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-30 Score=293.02 Aligned_cols=311 Identities=18% Similarity=0.262 Sum_probs=229.0
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC--ceEEEe-ccCCceeEEEEeeecCCCCCcEEEE
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS--SIILEV-HSPERCLLYSMKLWGDNLEALRIAS 198 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~--~~~~~~-~~~~~~~~~s~~~~~~s~~~~~l~s 198 (1088)
.+++..+.+|.+.|++++|+| + +||+|+.|++|++||+..+ .....+ .......+.++++ +|++.+|++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~---~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~---sp~~~~las 75 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQ---G--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAW---RPHTSLLAA 75 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEET---T--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEE---CTTSSEEEE
T ss_pred cccceeeccCCCceeeeccCC---C--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEE---CCCCCEEEE
Confidence 567888999999999999998 6 9999999999999999875 344555 2324445778877 678999999
Q ss_pred EecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCC
Q 001391 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR 278 (1088)
Q Consensus 199 g~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg 278 (1088)
|+.|++|++||+...... ......+..+.+|.+.|.+++|+|++++|++++.|+
T Consensus 76 ~s~D~~v~iw~~~~~~~~--------------------------~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~ 129 (330)
T 2hes_X 76 GSFDSTVSIWAKEESADR--------------------------TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDK 129 (330)
T ss_dssp EETTSCEEEEEC---------------------------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTS
T ss_pred EeCCCcEEEEEcccCcCc--------------------------cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 999999999998611000 002356777899999999999999999999999999
Q ss_pred cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CC--ceeEEEcccCCCCeEE
Q 001391 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DG--KQLKMIKEHIGRGIWR 353 (1088)
Q Consensus 279 ~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~--~~~~~~~~h~~~~V~~ 353 (1088)
+|++||+..... ..+.+. .+.+|...|.+++|+ +.+|++|+.|++|++||. .+ +++..+.+|.+ .|++
T Consensus 130 ~v~iwd~~~~~~----~~~~~~--~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~-~v~~ 202 (330)
T 2hes_X 130 SVWIWETDESGE----EYECIS--VLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG-TVWS 202 (330)
T ss_dssp CEEEEECCTTCC----CCEEEE--EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEE
T ss_pred EEEEEeccCCCC----CeEEEE--EeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCC-cEEE
Confidence 999999954211 023343 778999999999998 579999999999999998 44 57788999998 7999
Q ss_pred EEEcCC--CCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeecc-CCCCceEEEEeccC
Q 001391 354 CLYDSL--SSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTD-SKSEYVRCLHLTSE 430 (1088)
Q Consensus 354 l~~~~d--g~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~V~~l~~s~~ 430 (1088)
++|+|+ +.+|++|+.|++|++|++...... ....+ .....+. .|...|.+++|+++
T Consensus 203 ~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~-------------~~~~~--------~~~~~~~~~h~~~v~~v~~s~~ 261 (330)
T 2hes_X 203 SDFDKTEGVFRLCSGSDDSTVRVWKYMGDDED-------------DQQEW--------VCEAILPDVHKRQVYNVAWGFN 261 (330)
T ss_dssp EEECCSSSSCEEEEEETTSCEEEEEEEEECTT-------------SCEEE--------EEEEECCSCCSSCEEEEEECTT
T ss_pred EEecCCCCeeEEEEEeCCCeEEEEEecCCCcc-------------cccee--------EEeeecccccccceEEEEEcCC
Confidence 999998 679999999999999998432100 00000 0111222 26678999999988
Q ss_pred CeEEEEecCCeEEEEEeccCCcceeEEee---eecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcC
Q 001391 431 DTLYIATNHGYLYHTKLCDMDSVNWNKIL---QVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVG 503 (1088)
Q Consensus 431 ~~ll~~t~~g~i~~~~~~~~~~~~~~~~~---~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~ 503 (1088)
+.+++++.+|.+..|+.. ...|..+. .+|....+.++++.+. .++.+|++|+.||.|++|++..
T Consensus 262 ~~l~s~~~dg~v~iw~~~---~~~~~~~~~~~~~h~~~~v~~v~~~~~------~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 262 GLIASVGADGVLAVYEEV---DGEWKVFAKRALCHGVYEINVVKWLEL------NGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp SCEEEEETTSCEEEEEEE---TTEEEEEEEESCTTTTSCEEEEEEC-----------CCEEEEETTSEEEEEEC--
T ss_pred CEEEEEeCCCEEEEEEcC---CCceEEEeccccccccceEEEEEEecC------CCceEEEEecCCCcEEEEEecc
Confidence 888888999999866543 33332222 2343337888887652 1347899999999999999763
No 35
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.8e-31 Score=299.35 Aligned_cols=306 Identities=11% Similarity=0.111 Sum_probs=223.4
Q ss_pred eEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccce
Q 001391 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSL 124 (1088)
Q Consensus 45 ~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~ 124 (1088)
..+.|++..... ..++. .|.+++|+ ||| .+|++++|+++++||............+ ....
T Consensus 15 ~~r~w~~~~~~~----~~~~~-~v~~~~fs-------~dG----~~l~~~sd~~~r~Wd~~~~~~~~~~~~~----~~~~ 74 (344)
T 4gqb_B 15 AAREWNLPPNAP----ACMER-QLEAARYR-------SDG----ALLLGASSLSGRCWAGSLWLFKDPCAAP----NEGF 74 (344)
T ss_dssp --------CCSC----SSCCS-EEEEEEEC-------TTS----CEEEEEECCSSSCCCEEEEEESSGGGTT----CGGG
T ss_pred cccccCCCCCCc----ccccC-CEEEEEEC-------CCC----CEEEEEeCCceEEeeceeeeeccccccC----Ccce
Confidence 456788765433 22344 59999999 888 6777777888898875421100000000 0112
Q ss_pred eeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec---cCCceeEEEEeeecCCCCCcEEEEEec
Q 001391 125 VQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH---SPERCLLYSMKLWGDNLEALRIASGTI 201 (1088)
Q Consensus 125 ~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~---~~~~~~~~s~~~~~~s~~~~~l~sg~~ 201 (1088)
......|...|.+++|+| ++ .|++|+.||+|+|||+.+++.+.... ..+...+.+++| ++++.+|++|+.
T Consensus 75 ~~~~~~~~~~v~~~~~s~---d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~---spdg~~l~sgs~ 147 (344)
T 4gqb_B 75 CSAGVQTEAGVADLTWVG---ER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSV---LSSGTQAVSGSK 147 (344)
T ss_dssp CSEEEEESSCEEEEEEET---TT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEE---CTTSSEEEEEET
T ss_pred eeeeeccCCCEEEEEEeC---CC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEE---CCCCCEEEEEeC
Confidence 222334667899999999 75 67899999999999999887654432 123345777777 688999999999
Q ss_pred CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCC-EEEEEECCCcE
Q 001391 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSA 280 (1088)
Q Consensus 202 dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~-~l~s~s~Dg~v 280 (1088)
|++|++||+. +++.+..+.+|.+.|.+++|+|++. .+++++.|++|
T Consensus 148 d~~i~iwd~~---------------------------------~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v 194 (344)
T 4gqb_B 148 DICIKVWDLA---------------------------------QQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRI 194 (344)
T ss_dssp TSCEEEEETT---------------------------------TTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCE
T ss_pred CCeEEEEECC---------------------------------CCcEEEEEcCcCCceEEEEecCCCCCceeeecccccc
Confidence 9999999998 7888999999999999999999884 78999999999
Q ss_pred EEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEE
Q 001391 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLY 356 (1088)
Q Consensus 281 ~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~ 356 (1088)
++||+++++. ........|...+.+++|+ +.+|++|+.||+|++||+ +++++..+.+|.. .|++++|
T Consensus 195 ~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~f 265 (344)
T 4gqb_B 195 LLWDTRCPKP--------ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQ-CVTGLVF 265 (344)
T ss_dssp EEEETTSSSC--------EEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSS-CEEEEEE
T ss_pred ccccccccce--------eeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCC-CEEEEEE
Confidence 9999998643 2211334566779999998 468999999999999999 7889999999998 7999999
Q ss_pred cCCC-CEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCe-EE
Q 001391 357 DSLS-SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT-LY 434 (1088)
Q Consensus 357 ~~dg-~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~-ll 434 (1088)
+|++ ++|++|+.|++|++||+.... +..+.+|.+.|++++|+|++. ++
T Consensus 266 sp~g~~~lasgs~D~~i~vwd~~~~~------------------------------~~~~~~H~~~V~~v~~sp~~~~ll 315 (344)
T 4gqb_B 266 SPHSVPFLASLSEDCSLAVLDSSLSE------------------------------LFRSQAHRDFVRDATWSPLNHSLL 315 (344)
T ss_dssp CSSSSCCEEEEETTSCEEEECTTCCE------------------------------EEEECCCSSCEEEEEECSSSTTEE
T ss_pred ccCCCeEEEEEeCCCeEEEEECCCCc------------------------------EEEEcCCCCCEEEEEEeCCCCeEE
Confidence 9998 589999999999999985421 112346778899999999874 55
Q ss_pred E-EecCCeEEEEEecc
Q 001391 435 I-ATNHGYLYHTKLCD 449 (1088)
Q Consensus 435 ~-~t~~g~i~~~~~~~ 449 (1088)
+ ++.|+.|..|++..
T Consensus 316 as~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 316 TTVGWDHQVVHHVVPT 331 (344)
T ss_dssp EEEETTSCEEEEECCC
T ss_pred EEEcCCCeEEEEECCC
Confidence 4 46789998776643
No 36
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.8e-31 Score=307.96 Aligned_cols=320 Identities=15% Similarity=0.256 Sum_probs=233.4
Q ss_pred CcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCce
Q 001391 157 NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKC 236 (1088)
Q Consensus 157 g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~ 236 (1088)
..+..|+.....+...+.+|.. .++++++ +|++.+|++|+.||+|++||+.
T Consensus 46 ~~~~~~~~~~~~~~~~l~gH~~-~V~~~~~---sp~~~~l~s~s~D~~v~iWd~~------------------------- 96 (380)
T 3iz6_a 46 RTAVSFNPTDLVCCRTLQGHSG-KVYSLDW---TPEKNWIVSASQDGRLIVWNAL------------------------- 96 (380)
T ss_dssp GGCCCCCCCCCEEEEEECCCSS-CEEEEEE---CTTSSCEEEEETTSEEEEEETT-------------------------
T ss_pred ccccccccceeEEeeccccccc-EEEEEEE---cCCCCEEEEEeCCCeEEEEECC-------------------------
Confidence 3455677667777777877765 4677777 6889999999999999999998
Q ss_pred eEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEE
Q 001391 237 FKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCL 316 (1088)
Q Consensus 237 ~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~ 316 (1088)
++.....+.+|...|.+++|+|+++++++++.|+.+++||+....... ...... ..+.+|...|.++.|
T Consensus 97 --------~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~-~~~~~~--~~~~gh~~~v~~~~~ 165 (380)
T 3iz6_a 97 --------TSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRD-GNMPVS--RVLTGHKGYASSCQY 165 (380)
T ss_dssp --------TTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCC-CSSTTC--CBCCCCSSCCCCCBC
T ss_pred --------CCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcccc-CCccce--eeccCCCcceEEEEE
Confidence 677788899999999999999999999999999999999997643200 001112 267899999999999
Q ss_pred C---CCEEEEEeCCCcEEEEcC-CCceeEEE-----cccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEcCCCCCCccc
Q 001391 317 T---DSFIITAGEDCTCRVWGS-DGKQLKMI-----KEHIGRGIWRCLYDS-LSSLLVTAGFDSAIKVHQFQAFLPGSLE 386 (1088)
Q Consensus 317 ~---~~~l~sg~~Dg~i~vWd~-~~~~~~~~-----~~h~~~~V~~l~~~~-dg~~l~tg~~Dg~I~iwd~~~~~~~~~~ 386 (1088)
. +..|++|+.|++|++||+ +++.+..+ .+|.. .|.++++++ ++++|++|+.|++|++||++...
T Consensus 166 ~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~----- 239 (380)
T 3iz6_a 166 VPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA-DVLSLSINSLNANMFISGSCDTTVRLWDLRITS----- 239 (380)
T ss_dssp CSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCS-CEEEEEECSSSCCEEEEEETTSCEEEEETTTTC-----
T ss_pred ecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCcc-CeEEEEeecCCCCEEEEEECCCeEEEEECCCCC-----
Confidence 7 357999999999999999 77887777 56777 699999976 88999999999999999985210
Q ss_pred CCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcc
Q 001391 387 SHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMP 466 (1088)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1088)
..+..+.+|...|.+++|+|++
T Consensus 240 -----------------------~~~~~~~~h~~~v~~v~~~p~~----------------------------------- 261 (380)
T 3iz6_a 240 -----------------------RAVRTYHGHEGDINSVKFFPDG----------------------------------- 261 (380)
T ss_dssp -----------------------CCCEEECCCSSCCCEEEECTTS-----------------------------------
T ss_pred -----------------------cceEEECCcCCCeEEEEEecCC-----------------------------------
Confidence 0011222333445555555443
Q ss_pred eEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCe
Q 001391 467 IICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGR 546 (1088)
Q Consensus 467 i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~ 546 (1088)
..+++|+.||.|++||+.++.......... .............+++|+|++|++|+.||.
T Consensus 262 ------------------~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~ 321 (380)
T 3iz6_a 262 ------------------QRFGTGSDDGTCRLFDMRTGHQLQVYNREP--DRNDNELPIVTSVAFSISGRLLFAGYSNGD 321 (380)
T ss_dssp ------------------SEEEEECSSSCEEEEETTTTEEEEEECCCC--SSSCCSSCSCSEEEECSSSSEEEEECTTSC
T ss_pred ------------------CeEEEEcCCCeEEEEECCCCcEEEEecccc--cccccccCceEEEEECCCCCEEEEEECCCC
Confidence 456666667777777766543221110000 000000001112578999999999999999
Q ss_pred EEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCc
Q 001391 547 LKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (1088)
Q Consensus 547 i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~ 611 (1088)
|++||+...... ........+|...|++++|+|||++|++|+.||+|+||++..
T Consensus 322 i~vwd~~~~~~~-----------~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 322 CYVWDTLLAEMV-----------LNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp EEEEETTTCCEE-----------EEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred EEEEECCCCceE-----------EEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 999998754311 111122347999999999999999999999999999999874
No 37
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.4e-30 Score=291.27 Aligned_cols=298 Identities=13% Similarity=0.180 Sum_probs=233.7
Q ss_pred cceeeeccCCCCcEEEEEE-----ecccCCCCEEEEEEcCCcEEEEEcCCC-------ceEEEeccCCceeEEEEeeecC
Q 001391 122 LSLVQSLPRLSHWVFDVCF-----LKVCNGNRSLAIGCSDNSIRVWDISNS-------SIILEVHSPERCLLYSMKLWGD 189 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f-----~p~~~d~~~lasgs~Dg~V~iWd~~~~-------~~~~~~~~~~~~~~~s~~~~~~ 189 (1088)
.++...+.+|.+.|++++| ++ .++++|++|+.|++|++||+.+. .....+.+|.. .+.++++
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~--~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~-~V~~~~~--- 84 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKEN--EDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNH-FVSDLAL--- 84 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTT--CCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSS-CEEEEEE---
T ss_pred eeeeeeeccchhhhhheeeEEEeecC--CCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCC-ceEEEEE---
Confidence 5567789999999999999 43 27889999999999999999754 23445555544 4666766
Q ss_pred CCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCC
Q 001391 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS 269 (1088)
Q Consensus 190 s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~ 269 (1088)
++++.++++|+.|++|++||+. +++.+..+.+|.+.|.+++|+|+++
T Consensus 85 ~~~~~~l~s~s~D~~v~lwd~~---------------------------------~~~~~~~~~~h~~~v~~v~~sp~~~ 131 (343)
T 2xzm_R 85 SQENCFAISSSWDKTLRLWDLR---------------------------------TGTTYKRFVGHQSEVYSVAFSPDNR 131 (343)
T ss_dssp CSSTTEEEEEETTSEEEEEETT---------------------------------SSCEEEEEECCCSCEEEEEECSSTT
T ss_pred CCCCCEEEEEcCCCcEEEEECC---------------------------------CCcEEEEEcCCCCcEEEEEECCCCC
Confidence 6789999999999999999998 6777888999999999999999999
Q ss_pred EEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC------------CEEEEEeCCCcEEEEcCCC
Q 001391 270 KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD------------SFIITAGEDCTCRVWGSDG 337 (1088)
Q Consensus 270 ~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~------------~~l~sg~~Dg~i~vWd~~~ 337 (1088)
+|++++.|++|++||+.... ........+|...|.+++|++ .+|++++.|++|++||..+
T Consensus 132 ~l~s~~~d~~i~~wd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 203 (343)
T 2xzm_R 132 QILSAGAEREIKLWNILGEC--------KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF 203 (343)
T ss_dssp EEEEEETTSCEEEEESSSCE--------EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT
T ss_pred EEEEEcCCCEEEEEeccCCc--------eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC
Confidence 99999999999999997531 111012347889999999983 5899999999999999888
Q ss_pred ceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccC
Q 001391 338 KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDS 417 (1088)
Q Consensus 338 ~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (1088)
+....+.+|.. +|.+++|+|++++|++|+.||.|++||+...... ... + .
T Consensus 204 ~~~~~~~~h~~-~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~----------------~~~------------~-~ 253 (343)
T 2xzm_R 204 QIRYTFKAHES-NVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP----------------QRE------------F-D 253 (343)
T ss_dssp EEEEEEECCSS-CEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC----------------SEE------------E-E
T ss_pred ceeEEEcCccc-cceEEEECCCCCEEEEEcCCCeEEEEECCCCccc----------------cee------------e-c
Confidence 88888999988 7999999999999999999999999998321100 000 0 1
Q ss_pred CCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeee---------ecCCcceEEEecCCCCCCCcCCCCCeEE
Q 001391 418 KSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQ---------VSEGMPIICMDLLSNEPKYPCGIDDWVA 488 (1088)
Q Consensus 418 ~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~---------~~~~~~i~~l~~~~~~~~~s~~~~~~la 488 (1088)
+...|.+++|+|++.+++++.++.+..|++..........+.. ..+...+.++++.++ ++.|+
T Consensus 254 ~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--------g~~l~ 325 (343)
T 2xzm_R 254 AGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNAL--------GKKLF 325 (343)
T ss_dssp CSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSS--------SCCEE
T ss_pred CCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCC--------CCeEE
Confidence 1235899999999999998888888877665433221101110 023456888888654 48999
Q ss_pred EecCCCCEEEEEEcCC
Q 001391 489 LGDGKGNMTIVRVVGD 504 (1088)
Q Consensus 489 ~g~~dg~I~iw~~~~~ 504 (1088)
+|+.||.|++|++.++
T Consensus 326 sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 326 AGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEETTSEEEEEEEEEE
T ss_pred EecCCceEEEEEEEcc
Confidence 9999999999998753
No 38
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6.6e-30 Score=288.50 Aligned_cols=320 Identities=13% Similarity=0.151 Sum_probs=253.7
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
+.++|.+++|+ || +++++++. ++.+.+|+............|.. .|.+++|+ |++ .+++++
T Consensus 8 ~~~~v~~~~~s--~d----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~-------~~~----~~l~~~ 69 (337)
T 1gxr_A 8 GSKPAYSFHVT--AD----GQMQPVPFPPDALIGPGIPRHARQINTLNHGE-VVCAVTIS-------NPT----RHVYTG 69 (337)
T ss_dssp EEEECCEEEEC--SS----SCEEECCCCTTSSSSTTCCSEEEEEEEECCSS-CCCEEEEC-------SSS----SEEEEE
T ss_pred cCCceeEEEEC--CC----CCEEEeecCCCcEeccccCCccccceeccCCC-ceEEEEEe-------cCC----cEEEEc
Confidence 56789999999 99 89998877 46666666554444333444444 79999999 777 677777
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeec--cCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc--eE
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL--PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS--II 170 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l--~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~--~~ 170 (1088)
+|+.|++|++..... ...+..+ .+|...|.+++|+| ++++|++++.|+.|++||+.+++ ..
T Consensus 70 ~dg~i~iw~~~~~~~------------~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~~~d~~~~~~~~~ 134 (337)
T 1gxr_A 70 GKGCVKVWDISHPGN------------KSPVSQLDCLNRDNYIRSCKLLP---DGCTLIVGGEASTLSIWDLAAPTPRIK 134 (337)
T ss_dssp CBSEEEEEETTSTTC------------CSCSEEEECSCTTSBEEEEEECT---TSSEEEEEESSSEEEEEECCCC--EEE
T ss_pred CCCeEEEEECCCCCc------------eeeeecccccCCCCcEEEEEEcC---CCCEEEEEcCCCcEEEEECCCCCccee
Confidence 799999999986431 1222223 37899999999999 99999999999999999999887 34
Q ss_pred EEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeE
Q 001391 171 LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (1088)
Q Consensus 171 ~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1088)
..+..+. ..+.++++ ++++.++++++.||.|++||+. +.+.+.
T Consensus 135 ~~~~~~~-~~i~~~~~---~~~~~~l~~~~~dg~v~~~d~~---------------------------------~~~~~~ 177 (337)
T 1gxr_A 135 AELTSSA-PACYALAI---SPDSKVCFSCCSDGNIAVWDLH---------------------------------NQTLVR 177 (337)
T ss_dssp EEEECSS-SCEEEEEE---CTTSSEEEEEETTSCEEEEETT---------------------------------TTEEEE
T ss_pred eecccCC-CceEEEEE---CCCCCEEEEEeCCCcEEEEeCC---------------------------------CCceee
Confidence 4444443 33556666 5788999999999999999998 677788
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCC
Q 001391 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC 328 (1088)
Q Consensus 251 ~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg 328 (1088)
.+.+|...|.+++|+|+++++++++.|+.|++||+.+++. + ....|...+.+++|+ +.++++++.|+
T Consensus 178 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--------~---~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 246 (337)
T 1gxr_A 178 QFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ--------L---QQHDFTSQIFSLGYCPTGEWLAVGMESS 246 (337)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--------E---EEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred eeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCce--------E---eeecCCCceEEEEECCCCCEEEEEcCCC
Confidence 8899999999999999999999999999999999988532 2 334577889999998 67999999999
Q ss_pred cEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCC
Q 001391 329 TCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNF 408 (1088)
Q Consensus 329 ~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (1088)
.+++||+.......+..|.. +|.+++|+|++++|++++.||.|++|++..... +..
T Consensus 247 ~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~-----------------~~~------ 302 (337)
T 1gxr_A 247 NVEVLHVNKPDKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS-----------------IFQ------ 302 (337)
T ss_dssp CEEEEETTSSCEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----------------EEE------
T ss_pred cEEEEECCCCCeEEEcCCcc-ceeEEEECCCCCEEEEecCCCcEEEEECCCCeE-----------------EEE------
Confidence 99999996555667888887 799999999999999999999999999854211 111
Q ss_pred ccceeeccCCCCceEEEEeccCCeE-EEEecCCeEEEEEe
Q 001391 409 SEQIRLTDSKSEYVRCLHLTSEDTL-YIATNHGYLYHTKL 447 (1088)
Q Consensus 409 ~~~~~~~~~~~~~V~~l~~s~~~~l-l~~t~~g~i~~~~~ 447 (1088)
..+...+.+++|+|++.+ ++++.+|.+..|++
T Consensus 303 -------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 303 -------SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp -------EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred -------ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 123457999999998855 45677888886654
No 39
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.98 E-value=1.2e-29 Score=289.69 Aligned_cols=295 Identities=14% Similarity=0.185 Sum_probs=235.9
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEec
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~ 201 (1088)
.+....+.+|.+.|++++|+| ++++|+||+.|++|++||..+++....+..+.. .+.++++ +|++..+++|+.
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~---d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~-~v~~~~~---sp~g~~lasg~~ 126 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCK---DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCT-WVMACAY---APSGCAIACGGL 126 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTCCEEEEEECSSS-CCCEEEE---CTTSSEEEEEST
T ss_pred cEEEEEecCCCCeEEEEEECC---CCCEEEEEeCCCeEEEEECCCCCcceEEecCCC-CEEEEEE---CCCCCEEEEeeC
Confidence 456788999999999999999 999999999999999999999988877765543 3445555 689999999999
Q ss_pred CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEE
Q 001391 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSAR 281 (1088)
Q Consensus 202 dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~ 281 (1088)
|+.+++|++....... .......+.+|.+.|.+++|+|++..|++++.|++|+
T Consensus 127 d~~i~v~~~~~~~~~~---------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~ 179 (354)
T 2pbi_B 127 DNKCSVYPLTFDKNEN---------------------------MAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCA 179 (354)
T ss_dssp TSEEEEEECCCCTTCC---------------------------SGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred CCCEEEEEEecccccc---------------------------ccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEE
Confidence 9999999987221110 1234556778999999999999999999999999999
Q ss_pred EEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC----CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEE
Q 001391 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT----DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLY 356 (1088)
Q Consensus 282 iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~----~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~ 356 (1088)
+||+.++ +.+. .+.+|...|.++++. +.+|++|+.||+|++||+ +++++..+..|.. .|.+++|
T Consensus 180 lwd~~~~--------~~~~--~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~~ 248 (354)
T 2pbi_B 180 LWDVESG--------QLLQ--SFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES-DVNSVRY 248 (354)
T ss_dssp EEETTTC--------CEEE--EEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEE
T ss_pred EEeCCCC--------eEEE--EEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC-CeEEEEE
Confidence 9999885 3343 778999999999996 369999999999999999 7888999999998 6999999
Q ss_pred cCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEE-
Q 001391 357 DSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI- 435 (1088)
Q Consensus 357 ~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~- 435 (1088)
+|++.+|++|+.|++|++||+.... .+.... ...+...+.+++|+|++.+++
T Consensus 249 ~p~~~~l~s~s~D~~v~lwd~~~~~-----------------~~~~~~----------~~~~~~~~~~~~~s~~g~~l~~ 301 (354)
T 2pbi_B 249 YPSGDAFASGSDDATCRLYDLRADR-----------------EVAIYS----------KESIIFGASSVDFSLSGRLLFA 301 (354)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTE-----------------EEEEEC----------CTTCCSCEEEEEECTTSSEEEE
T ss_pred eCCCCEEEEEeCCCeEEEEECCCCc-----------------EEEEEc----------CCCcccceeEEEEeCCCCEEEE
Confidence 9999999999999999999995421 000000 011123588999999986655
Q ss_pred EecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEE
Q 001391 436 ATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (1088)
Q Consensus 436 ~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~ 500 (1088)
++.++.+..|++.... ....+.+| ...|.++++.++ +.+|++|+.||.|++|+
T Consensus 302 g~~d~~i~vwd~~~~~---~~~~l~~h-~~~v~~l~~spd--------g~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 302 GYNDYTINVWDVLKGS---RVSILFGH-ENRVSTLRVSPD--------GTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EETTSCEEEEETTTCS---EEEEECCC-SSCEEEEEECTT--------SSCEEEEETTSEEEEEC
T ss_pred EECCCcEEEEECCCCc---eEEEEECC-CCcEEEEEECCC--------CCEEEEEcCCCCEEecC
Confidence 5678889866654332 22333444 578999998654 48999999999999995
No 40
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.98 E-value=1.3e-29 Score=286.89 Aligned_cols=283 Identities=15% Similarity=0.219 Sum_probs=228.5
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC-----eeEEEEeeeCCcceEEEEecccccccCCCccceee
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG-----TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg-----~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~ 89 (1088)
|.++|++|+|+ |+ .+++|++|+ |++|+|||+.++ .+...+.+|.. .|.+++|+ |+++ .
T Consensus 37 H~~~V~~v~~s--p~---~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~-~V~~~~~s-------~dg~---~ 100 (340)
T 4aow_A 37 HNGWVTQIATT--PQ---FPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSH-FVSDVVIS-------SDGQ---F 100 (340)
T ss_dssp CSSCEEEEEEC--TT---CTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSS-CEEEEEEC-------TTSS---E
T ss_pred ccCCEEEEEEe--CC---CCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCC-CEEEEEEC-------CCCC---E
Confidence 77999999999 97 247999888 899999998764 35566777665 79999999 7773 4
Q ss_pred EEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce
Q 001391 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1088)
Q Consensus 90 ~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~ 169 (1088)
+++++.|+.|++|+... .........+...+..+.+++ ++.+|++|+.|+.+++||+.....
T Consensus 101 l~s~~~d~~i~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~s~d~~~~~~d~~~~~~ 162 (340)
T 4aow_A 101 ALSGSWDGTLRLWDLTT---------------GTTTRRFVGHTKDVLSVAFSS---DNRQIVSGSRDKTIKLWNTLGVCK 162 (340)
T ss_dssp EEEEETTSEEEEEETTT---------------TEEEEEEECCSSCEEEEEECT---TSSCEEEEETTSCEEEECTTSCEE
T ss_pred EEEEcccccceEEeecc---------------cceeeeecCCCCceeEEEEee---cCccceeecCCCeEEEEEeCCCce
Confidence 55556699999999874 344555667888999999999 999999999999999999987665
Q ss_pred EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeee
Q 001391 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (1088)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 249 (1088)
...........+..+++.. .....++++++.|+.|++||+. ..+.+
T Consensus 163 ~~~~~~~~~~~v~~~~~~~-~~~~~~~~s~~~d~~i~i~d~~---------------------------------~~~~~ 208 (340)
T 4aow_A 163 YTVQDESHSEWVSCVRFSP-NSSNPIIVSCGWDKLVKVWNLA---------------------------------NCKLK 208 (340)
T ss_dssp EEECSSSCSSCEEEEEECS-CSSSCEEEEEETTSCEEEEETT---------------------------------TTEEE
T ss_pred EEEEeccccCcccceEEcc-CCCCcEEEEEcCCCEEEEEECC---------------------------------CCcee
Confidence 5443333334455555533 3456788999999999999998 67788
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCC
Q 001391 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDC 328 (1088)
Q Consensus 250 ~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg 328 (1088)
..+.+|.+.|.+++|+|++++|++++.|+.|++||+.+.+ .+ ....+...|.+++|+ +..+++++.|+
T Consensus 209 ~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~--------~~---~~~~~~~~v~~~~~~~~~~~~~~~~d~ 277 (340)
T 4aow_A 209 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK--------HL---YTLDGGDIINALCFSPNRYWLCAATGP 277 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE--------EE---EEEECSSCEEEEEECSSSSEEEEEETT
T ss_pred eEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc--------ee---eeecCCceEEeeecCCCCceeeccCCC
Confidence 8899999999999999999999999999999999998853 33 223345689999998 56788899999
Q ss_pred cEEEEcC-CCceeEEE---------cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 329 TCRVWGS-DGKQLKMI---------KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 329 ~i~vWd~-~~~~~~~~---------~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
.|++||+ .+..+..+ ..|.. .|++++|+|++++|++|+.||.|++||++
T Consensus 278 ~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 278 SIKIWDLEGKIIVDELKQEVISTSSKAEPP-QCTSLAWSADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp EEEEEETTTTEEEEEECCC-------CCCC-CEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred EEEEEECCCCeEEEeccccceeeeccCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 9999999 44444443 35666 69999999999999999999999999984
No 41
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.98 E-value=1.9e-30 Score=296.67 Aligned_cols=309 Identities=11% Similarity=0.107 Sum_probs=217.7
Q ss_pred CCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC-------CCEEEEEEeccC
Q 001391 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-------EKRVKLFELNFE 107 (1088)
Q Consensus 35 ~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-------d~~v~iw~l~~~ 107 (1088)
..|+.+..+.....|++....+ ..|++ .|.+++|| ||| .+|++++ |++|++|+....
T Consensus 17 ~~~~~~~g~~~~~~w~~p~~~p----~~H~~-~V~~v~fS-------pDG----~~las~s~d~~~~wd~~v~~~~~~~~ 80 (357)
T 4g56_B 17 NLYFQSNGSSKGSAWGRPVTAP----ACMEV-QIGAVRYR-------RDG----ALLLAASSLSSRTWGGSIWVFKDPEG 80 (357)
T ss_dssp ---------------------------CCCS-EEEEEEEC-------SSS----CEEEEEECSSSSSCCEEEEEESSCC-
T ss_pred ceEEecCCCccccccCCCCCCc----ccccC-CEEEEEEC-------CCC----CEEEEEcCCCCccccCeEEEEECCCC
Confidence 4444444467889999764332 35555 79999999 898 5666654 567888876643
Q ss_pred CCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec---cCCceeEEEE
Q 001391 108 LSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH---SPERCLLYSM 184 (1088)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~---~~~~~~~~s~ 184 (1088)
.. ...+.....+|...|.+++|+| ++.+ ++++.||+|+|||+.+++...... ......+.++
T Consensus 81 ~~-----------~~~~~~~~~~~~~~V~~~~~s~---d~~~-l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v 145 (357)
T 4g56_B 81 AP-----------NESLCTAGVQTEAGVTDVAWVS---EKGI-LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTL 145 (357)
T ss_dssp -------------CGGGCSEEEECSSCEEEEEEET---TTEE-EEEETTSCEEEC--------CCCCEEECCCSSCEEEE
T ss_pred Cc-----------ceeEecccCCCCCCEEEEEEcC---CCCE-EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEE
Confidence 20 1234445567999999999999 8764 567889999999998876543221 1223456777
Q ss_pred eeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEE
Q 001391 185 KLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEW 264 (1088)
Q Consensus 185 ~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~ 264 (1088)
++ +|++.+|++|+.|+.|++||+. +++.+..+.+|...|.+++|
T Consensus 146 ~~---spdg~~l~sgs~dg~v~iwd~~---------------------------------~~~~~~~~~~h~~~v~~v~~ 189 (357)
T 4g56_B 146 SV---FSDGTQAVSGGKDFSVKVWDLS---------------------------------QKAVLKSYNAHSSEVNCVAA 189 (357)
T ss_dssp EE---CSSSSEEEEEETTSCEEEEETT---------------------------------TTEEEEEECCCSSCEEEEEE
T ss_pred EE---CCCCCEEEEEeCCCeEEEEECC---------------------------------CCcEEEEEcCCCCCEEEEEE
Confidence 76 6889999999999999999998 77888899999999999999
Q ss_pred cCCCC-EEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcC-CCce
Q 001391 265 SSCGS-KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQ 339 (1088)
Q Consensus 265 sp~g~-~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~-~~~~ 339 (1088)
+|++. ++++++.|++|++||+++++. ........|...+.+++|+ +.+|++|+.|+.|++||+ ++++
T Consensus 190 s~~~~~~~~s~~~dg~v~~wd~~~~~~--------~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~ 261 (357)
T 4g56_B 190 CPGKDTIFLSCGEDGRILLWDTRKPKP--------ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS 261 (357)
T ss_dssp CTTCSSCEEEEETTSCEEECCTTSSSC--------BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG
T ss_pred ccCCCceeeeeccCCceEEEECCCCce--------eeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcE
Confidence 99875 789999999999999988643 2112445677889999998 468999999999999999 7888
Q ss_pred eEEEcccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCC
Q 001391 340 LKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSK 418 (1088)
Q Consensus 340 ~~~~~~h~~~~V~~l~~~~dg-~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (1088)
+..+.+|.. +|++++|+|++ ++|++|+.|++|+|||++... .+ ...+|
T Consensus 262 ~~~~~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~------------------~~------------~~~~H 310 (357)
T 4g56_B 262 AQTSAVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADFSE------------------VF------------RDLSH 310 (357)
T ss_dssp CEEECCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTSCE------------------EE------------EECCC
T ss_pred eEEEeccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc------------------Ee------------EECCC
Confidence 999999988 79999999987 589999999999999985421 11 11246
Q ss_pred CCceEEEEecc-CCeE-EEEecCCeEEEEEecc
Q 001391 419 SEYVRCLHLTS-EDTL-YIATNHGYLYHTKLCD 449 (1088)
Q Consensus 419 ~~~V~~l~~s~-~~~l-l~~t~~g~i~~~~~~~ 449 (1088)
.+.|++++|+| ++.+ +.++.+|.|..|++..
T Consensus 311 ~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 311 RDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp SSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred CCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 67899999998 5654 4567889999777644
No 42
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.98 E-value=3.2e-29 Score=297.49 Aligned_cols=276 Identities=18% Similarity=0.299 Sum_probs=229.5
Q ss_pred eeee-eEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE
Q 001391 16 YLGE-ISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1088)
Q Consensus 16 ~~~~-V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~ 93 (1088)
|.++ ++++.|+ +.+|++|+ |++|++||+.+++.+..+.+|.+ .|.+++|+ +++ .++++
T Consensus 120 h~~~v~~~~~~~--------~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~-~V~~l~~~-------~~~----~l~s~ 179 (464)
T 3v7d_B 120 HMTSVITCLQFE--------DNYVITGADDKMIRVYDSINKKFLLQLSGHDG-GVWALKYA-------HGG----ILVSG 179 (464)
T ss_dssp CSSSCEEEEEEE--------TTEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEEC-------STT----EEEEE
T ss_pred CCCCcEEEEEEC--------CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCc-CEEEEEEc-------CCC----EEEEE
Confidence 3344 6788877 56888888 79999999999999999998777 79999999 665 66666
Q ss_pred ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceE---
Q 001391 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII--- 170 (1088)
Q Consensus 94 ~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~--- 170 (1088)
+.|++|++||+.. .+.+..+.+|.+.|.+++|++ .+++.+|++|+.|++|++||+.++...
T Consensus 180 s~dg~i~vwd~~~---------------~~~~~~~~~h~~~v~~l~~~~-~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 243 (464)
T 3v7d_B 180 STDRTVRVWDIKK---------------GCCTHVFEGHNSTVRCLDIVE-YKNIKYIVTGSRDNTLHVWKLPKESSVPDH 243 (464)
T ss_dssp ETTSCEEEEETTT---------------TEEEEEECCCSSCEEEEEEEE-SSSCEEEEEEETTSCEEEEECCCCCCC---
T ss_pred eCCCCEEEEECCC---------------CcEEEEECCCCCccEEEEEec-CCCCCEEEEEcCCCcEEEeeCCCCcccccc
Confidence 7799999999985 456778889999999999995 127789999999999999999877543
Q ss_pred --------------------EEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCC
Q 001391 171 --------------------LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGS 230 (1088)
Q Consensus 171 --------------------~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~ 230 (1088)
..+..+.. .+.++ ++++.++++|+.||.|++||+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~-----~~~~~~l~~~~~d~~i~vwd~~------------------- 298 (464)
T 3v7d_B 244 GEEHDYPLVFHTPEENPYFVGVLRGHMA-SVRTV-----SGHGNIVVSGSYDNTLIVWDVA------------------- 298 (464)
T ss_dssp ---CCSSEEESCGGGCTTEEEEECCCSS-CEEEE-----EEETTEEEEEETTSCEEEEETT-------------------
T ss_pred cccCCcceEeeccCCCeEEEEEccCccc-eEEEE-----cCCCCEEEEEeCCCeEEEEECC-------------------
Confidence 22223322 22333 3578899999999999999998
Q ss_pred CCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcc
Q 001391 231 SSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310 (1088)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~ 310 (1088)
+.+.+..+.+|...|.+++|+|+++++++++.|+.|++||+.++ +.+. .+.+|...
T Consensus 299 --------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~--------~~~~--~~~~h~~~ 354 (464)
T 3v7d_B 299 --------------QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG--------ELMY--TLQGHTAL 354 (464)
T ss_dssp --------------TTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT--------EEEE--EECCCSSC
T ss_pred --------------CCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--------cEEE--EEeCCCCc
Confidence 77888899999999999999999999999999999999999885 3443 77899999
Q ss_pred eEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 311 VWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 311 I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
|.+++|++.+|++++.||+|++||+ +++...... +.. .+..+++++++++|++|+ ||.|++||+..
T Consensus 355 v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~-~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~ 421 (464)
T 3v7d_B 355 VGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH-HTN-LSAITTFYVSDNILVSGS-ENQFNIYNLRS 421 (464)
T ss_dssp EEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE-CTT-CCCEEEEEECSSEEEEEE-TTEEEEEETTT
T ss_pred EEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeec-CCC-CccEEEEEeCCCEEEEec-CCeEEEEECCC
Confidence 9999999999999999999999999 555444442 333 578889999999999998 99999999954
No 43
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.97 E-value=2.6e-30 Score=302.32 Aligned_cols=328 Identities=11% Similarity=0.108 Sum_probs=250.0
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECC
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd 96 (1088)
..+++++|+ |+ +++|++|+ |+.|++||+.+++....+..+ . .+....|+ ++++ .+++++.|
T Consensus 57 ~~~~~~~~s--~~----g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~-~~~~~~~~-------~~~~---~l~~~~~d 118 (420)
T 3vl1_A 57 DAGKGNTFE--KV----GSHLYKARLDGHDFLFNTIIRDGSKMLKRA-D-YTAVDTAK-------LQMR---RFILGTTE 118 (420)
T ss_dssp BCCTTCEEE--EE----ETTEEEEEETTEEEEEECCSEETTTTSCSC-C-EEEEEEEC-------SSSC---EEEEEETT
T ss_pred ccccceeee--ec----CCeEEEEEcCCcEEEEEecccceeeEEecC-C-ceEEEEEe-------cCCC---EEEEEECC
Confidence 345689999 99 88888887 899999999988776666554 2 34444666 6762 44555569
Q ss_pred CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccC
Q 001391 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP 176 (1088)
Q Consensus 97 ~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~ 176 (1088)
+.|++||+.. .+....+.+|.+.|.+++|+| ++++|++|+.|++|++||+.+++.+..+..+
T Consensus 119 g~i~iwd~~~---------------~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h 180 (420)
T 3vl1_A 119 GDIKVLDSNF---------------NLQREIDQAHVSEITKLKFFP---SGEALISSSQDMQLKIWSVKDGSNPRTLIGH 180 (420)
T ss_dssp SCEEEECTTS---------------CEEEEETTSSSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTCCCCEEEECC
T ss_pred CCEEEEeCCC---------------cceeeecccccCccEEEEECC---CCCEEEEEeCCCeEEEEeCCCCcCceEEcCC
Confidence 9999999874 356677789999999999999 9999999999999999999999988888765
Q ss_pred CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC--
Q 001391 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG-- 254 (1088)
Q Consensus 177 ~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g-- 254 (1088)
.. .+.++++ ++++.+|++++.||.|++||+. +++.+..+..
T Consensus 181 ~~-~v~~~~~---~~~~~~l~s~~~d~~v~iwd~~---------------------------------~~~~~~~~~~~~ 223 (420)
T 3vl1_A 181 RA-TVTDIAI---IDRGRNVLSASLDGTIRLWECG---------------------------------TGTTIHTFNRKE 223 (420)
T ss_dssp SS-CEEEEEE---ETTTTEEEEEETTSCEEEEETT---------------------------------TTEEEEEECBTT
T ss_pred CC-cEEEEEE---cCCCCEEEEEcCCCcEEEeECC---------------------------------CCceeEEeecCC
Confidence 44 4667776 5788999999999999999998 3444444442
Q ss_pred ----------------------CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceE
Q 001391 255 ----------------------HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312 (1088)
Q Consensus 255 ----------------------h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~ 312 (1088)
|...+.+++|+|+++++++++.|+.|++||+.+++. +. ....+|...|.
T Consensus 224 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~--------~~-~~~~~~~~~v~ 294 (420)
T 3vl1_A 224 NPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ--------TI-QLPSKFTCSCN 294 (420)
T ss_dssp BTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCE--------EE-EECCTTSSCEE
T ss_pred CCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCce--------eE-EcccccCCCce
Confidence 234555566689999999999999999999988532 22 14456889999
Q ss_pred EEEEC--CC-EEEEEeCCCcEEEEcC-CC-ceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccC
Q 001391 313 DCCLT--DS-FIITAGEDCTCRVWGS-DG-KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLES 387 (1088)
Q Consensus 313 ~v~~~--~~-~l~sg~~Dg~i~vWd~-~~-~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~ 387 (1088)
+++|+ +. +|++|+.||.|++||+ ++ .++..+..|...+|.++.+ +++.+|++++.||.|++|++.......
T Consensus 295 ~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~--- 370 (420)
T 3vl1_A 295 SLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESER--- 370 (420)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCS---
T ss_pred eEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCc---
Confidence 99998 34 9999999999999999 44 4478888766657888855 577899999999999999995421000
Q ss_pred CccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCe----EEEEecCCeEEEEEec
Q 001391 388 HPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT----LYIATNHGYLYHTKLC 448 (1088)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~----ll~~t~~g~i~~~~~~ 448 (1088)
.+.. .........+.+.|.+++|+|++. +++.+++|.+..|++.
T Consensus 371 -----------~~~~------~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 371 -----------PAIE------FETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp -----------CEEC------TTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred -----------ccee------ccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 0000 000112335567899999999887 8888899988866653
No 44
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.97 E-value=3.8e-29 Score=282.29 Aligned_cols=279 Identities=13% Similarity=0.189 Sum_probs=233.6
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeE---EEEee-eCCcceEEEEecccccccCCCccceeeEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLI---RPFQV-FHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~---~~~~~-~~~~~V~~i~~s~~~~~~~~d~~~~~~~l 91 (1088)
|.++|++++|+ |+ +++|+++.++.|+|||+.+++.. ..+.. .+...|.+++|+ |+++ .++
T Consensus 50 h~~~v~~~~~~--~~----~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------~~~~---~l~ 113 (337)
T 1gxr_A 50 HGEVVCAVTIS--NP----TRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL-------PDGC---TLI 113 (337)
T ss_dssp CSSCCCEEEEC--SS----SSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEEC-------TTSS---EEE
T ss_pred CCCceEEEEEe--cC----CcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEc-------CCCC---EEE
Confidence 67889999999 99 89999999999999999887533 33331 234479999999 7763 455
Q ss_pred EEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEE
Q 001391 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL 171 (1088)
Q Consensus 92 a~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~ 171 (1088)
+++.|+.|++|++.... ......+.+|...|.+++|+| ++++|++++.|+.|++||+.+++.+.
T Consensus 114 ~~~~d~~i~~~d~~~~~-------------~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~v~~~d~~~~~~~~ 177 (337)
T 1gxr_A 114 VGGEASTLSIWDLAAPT-------------PRIKAELTSSAPACYALAISP---DSKVCFSCCSDGNIAVWDLHNQTLVR 177 (337)
T ss_dssp EEESSSEEEEEECCCC---------------EEEEEEECSSSCEEEEEECT---TSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred EEcCCCcEEEEECCCCC-------------cceeeecccCCCceEEEEECC---CCCEEEEEeCCCcEEEEeCCCCceee
Confidence 55669999999998543 346677888999999999999 99999999999999999999999888
Q ss_pred EeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEE
Q 001391 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (1088)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1088)
.+..+.. .+.++.+ ++++..|++++.||.|++||+. ..+.+..
T Consensus 178 ~~~~~~~-~i~~~~~---~~~~~~l~~~~~dg~i~~~d~~---------------------------------~~~~~~~ 220 (337)
T 1gxr_A 178 QFQGHTD-GASCIDI---SNDGTKLWTGGLDNTVRSWDLR---------------------------------EGRQLQQ 220 (337)
T ss_dssp EECCCSS-CEEEEEE---CTTSSEEEEEETTSEEEEEETT---------------------------------TTEEEEE
T ss_pred eeecccC-ceEEEEE---CCCCCEEEEEecCCcEEEEECC---------------------------------CCceEee
Confidence 8876544 3566666 6788999999999999999998 4555555
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCc
Q 001391 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCT 329 (1088)
Q Consensus 252 ~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~ 329 (1088)
+ .|...+.+++|+|+++++++++.|+.|++||+.+.+. ..+..|...|.+++|+ +.+|++++.||.
T Consensus 221 ~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 288 (337)
T 1gxr_A 221 H-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-----------YQLHLHESCVLSLKFAYCGKWFVSTGKDNL 288 (337)
T ss_dssp E-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-----------EEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred e-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-----------EEEcCCccceeEEEECCCCCEEEEecCCCc
Confidence 4 4788999999999999999999999999999988532 2677899999999998 689999999999
Q ss_pred EEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 330 CRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 330 i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
+++|++ .++.+.. ..|.. .|.+++|+|++++|++++.||.|++|++
T Consensus 289 i~~~~~~~~~~~~~-~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 289 LNAWRTPYGASIFQ-SKESS-SVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEETTTCCEEEE-EECSS-CEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEEEECCCCeEEEE-ecCCC-cEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 999999 5665544 34666 6999999999999999999999999996
No 45
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.8e-30 Score=297.41 Aligned_cols=293 Identities=13% Similarity=0.161 Sum_probs=244.4
Q ss_pred CCCCCceEEec----CCCc-----------------------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECC
Q 001391 1 MGKKDLSEWRL----DVGQ-----------------------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLE 52 (1088)
Q Consensus 1 ~~d~~i~iWdl----~~g~-----------------------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~ 52 (1088)
+.|+.|++||+ .+++ |.++|++++|+ |+ +++|++|+ ++.|+||| .
T Consensus 65 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~----~~~l~~~~~dg~i~i~~-~ 137 (425)
T 1r5m_A 65 EKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWS--HD----GNSIVTGVENGELRLWN-K 137 (425)
T ss_dssp ETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEEC--TT----SSEEEEEETTSCEEEEE-T
T ss_pred cCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEc--CC----CCEEEEEeCCCeEEEEe-C
Confidence 35889999999 7776 45689999999 99 89999988 79999999 7
Q ss_pred CCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCC
Q 001391 53 AGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS 132 (1088)
Q Consensus 53 tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~ 132 (1088)
+++.+..+..|.. .|.+++|+ |+++ .+++++.|+.|++|++.. .+.+..+..|.
T Consensus 138 ~~~~~~~~~~~~~-~v~~~~~~-------~~~~---~l~~~~~d~~i~iwd~~~---------------~~~~~~~~~~~ 191 (425)
T 1r5m_A 138 TGALLNVLNFHRA-PIVSVKWN-------KDGT---HIISMDVENVTILWNVIS---------------GTVMQHFELKE 191 (425)
T ss_dssp TSCEEEEECCCCS-CEEEEEEC-------TTSS---EEEEEETTCCEEEEETTT---------------TEEEEEECCC-
T ss_pred CCCeeeeccCCCc-cEEEEEEC-------CCCC---EEEEEecCCeEEEEECCC---------------CcEEEEeeccc
Confidence 7888888888666 79999999 7763 555666699999999974 34555566666
Q ss_pred Cc---------------EEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEE
Q 001391 133 HW---------------VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (1088)
Q Consensus 133 ~~---------------I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~ 197 (1088)
.. |.+++|+| ++ .+++++.|+.|++||+.+++.+..+..+.. .+.++++ ++++.+|+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~-~i~~~~~---~~~~~~l~ 263 (425)
T 1r5m_A 192 TGGSSINAENHSGDGSLGVDVEWVD---DD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHG-PISVLEF---NDTNKLLL 263 (425)
T ss_dssp --------------CCCBSCCEEEE---TT-EEEEECGGGCEEEEETTCSSCSEEECCCSS-CEEEEEE---ETTTTEEE
T ss_pred cCccceeeccccCCcceeeEEEEcC---CC-EEEEEcCCCeEEEEEcCCCceeeeeccCCC-ceEEEEE---CCCCCEEE
Confidence 55 99999998 65 588899999999999999988887765543 3566666 56788999
Q ss_pred EEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC
Q 001391 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277 (1088)
Q Consensus 198 sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D 277 (1088)
+++.||.|++||+. ....+..+.+|...|.+++|+|++ ++++++.|
T Consensus 264 ~~~~d~~i~i~d~~---------------------------------~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d 309 (425)
T 1r5m_A 264 SASDDGTLRIWHGG---------------------------------NGNSQNCFYGHSQSIVSASWVGDD-KVISCSMD 309 (425)
T ss_dssp EEETTSCEEEECSS---------------------------------SBSCSEEECCCSSCEEEEEEETTT-EEEEEETT
T ss_pred EEcCCCEEEEEECC---------------------------------CCccceEecCCCccEEEEEECCCC-EEEEEeCC
Confidence 99999999999998 667778888999999999999999 99999999
Q ss_pred CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCc----------------
Q 001391 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGK---------------- 338 (1088)
Q Consensus 278 g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~---------------- 338 (1088)
+.|++||+.++ +.+. .+..|...|.+++|+ +.+|++++.||.|++|++ .++
T Consensus 310 ~~i~i~d~~~~--------~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~ 379 (425)
T 1r5m_A 310 GSVRLWSLKQN--------TLLA--LSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNP 379 (425)
T ss_dssp SEEEEEETTTT--------EEEE--EEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------C
T ss_pred CcEEEEECCCC--------cEeE--ecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCc
Confidence 99999999885 3343 677899999999998 689999999999999999 556
Q ss_pred ----eeEEEcccCCC-CeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 339 ----QLKMIKEHIGR-GIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 339 ----~~~~~~~h~~~-~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
.+..+..|... +|.+++|+|++++|++++.||.|++|+++
T Consensus 380 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 380 LPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred ccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 78888888653 69999999999999999999999999985
No 46
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.3e-31 Score=309.23 Aligned_cols=306 Identities=13% Similarity=0.154 Sum_probs=244.2
Q ss_pred CCCCCceEEecCCCc---------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCC----CeeEEEEeeeCCc
Q 001391 1 MGKKDLSEWRLDVGQ---------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA----GTLIRPFQVFHGI 66 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~---------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t----g~~~~~~~~~~~~ 66 (1088)
+.|+.|++||+.++. |.++|++++|+ |+ +++|++|+ |+.|+|||+.+ .+.+..+..|..
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s--~~----~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~- 114 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASLQVDSKFNDLDWS--HN----NKIIAGALDNGSLELYSTNEANNAINSMARFSNHSS- 114 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEEC--SS----SSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSS-
T ss_pred CCCCeEEEEEccCCCCCcEEEEEecCCceEEEEEC--CC----CCeEEEEccCCeEEEeecccccccccchhhccCCcc-
Confidence 368899999998774 56789999999 99 88999987 79999999987 357778887666
Q ss_pred ceEEEEecccccccCCC-ccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEeccc
Q 001391 67 RLHGISCNFINCTEGSV-STRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d-~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~ 144 (1088)
.|.+++|+ |+ + .++++ +.|+.|++||+.........+ .......+.+|...|.+++|+|
T Consensus 115 ~v~~~~~~-------~~~~----~~l~s~~~dg~v~iwd~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~-- 175 (416)
T 2pm9_A 115 SVKTVKFN-------AKQD----NVLASGGNNGEIFIWDMNKCTESPSNY------TPLTPGQSMSSVDEVISLAWNQ-- 175 (416)
T ss_dssp CCCEEEEC-------SSST----TBEEEECSSSCEEBCBTTTTSSCTTTC------CCBCCCCSCCSSCCCCEEEECS--
T ss_pred ceEEEEEc-------CCCC----CEEEEEcCCCeEEEEECCCCccccccc------cccccccccCCCCCeeEEEeCC--
Confidence 79999999 65 4 45555 458999999998643110000 0112234568999999999999
Q ss_pred CC-CCEEEEEEcCCcEEEEEcCCCceEEEeccCC-----ceeEEEEeeecCCCCC-cEEEEEecCC---eEEEEEeccCc
Q 001391 145 NG-NRSLAIGCSDNSIRVWDISNSSIILEVHSPE-----RCLLYSMKLWGDNLEA-LRIASGTIYN---EIIVWKVDWEH 214 (1088)
Q Consensus 145 ~d-~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~-----~~~~~s~~~~~~s~~~-~~l~sg~~dg---~I~vwd~~~~~ 214 (1088)
+ +.+|++++.|+.|++||+.+++.+..+..+. ...+.++++ ++++ .++++++.|+ .|++||+++
T Consensus 176 -~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~l~~~~~d~~~~~i~~~d~~~-- 249 (416)
T 2pm9_A 176 -SLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEW---HPKNSTRVATATGSDNDPSILIWDLRN-- 249 (416)
T ss_dssp -SCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEE---CSSCTTEEEEEECCSSSCCCCEEETTS--
T ss_pred -CCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEE---CCCCCCEEEEEECCCCCceEEEEeCCC--
Confidence 7 7899999999999999999999888887653 455777777 5665 6899999998 999999981
Q ss_pred cccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe-CCCCCEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCcccC
Q 001391 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-GHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKD 292 (1088)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~v~~sp-~g~~l~s~s~Dg~v~iWd~~~~~~~~ 292 (1088)
...++..+. +|...|.+++|+| ++++|++++.|+.|++||+.++
T Consensus 250 ------------------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~---- 295 (416)
T 2pm9_A 250 ------------------------------ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA---- 295 (416)
T ss_dssp ------------------------------TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC----
T ss_pred ------------------------------CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC----
Confidence 124455666 8999999999999 9999999999999999999885
Q ss_pred CCCceeeeceeeeccCcceEEEEEC--C-CEEEEEeCCCcEEEEcC-CCceeEEE-------------------------
Q 001391 293 SDSIEEVGSSVLYGHNARVWDCCLT--D-SFIITAGEDCTCRVWGS-DGKQLKMI------------------------- 343 (1088)
Q Consensus 293 ~~~~~~i~~~~~~~h~~~I~~v~~~--~-~~l~sg~~Dg~i~vWd~-~~~~~~~~------------------------- 343 (1088)
+.+. .+.+|...|.+++|+ + .+|++++.|+.|++|++ .++.....
T Consensus 296 ----~~~~--~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (416)
T 2pm9_A 296 ----EQLS--QFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKE 369 (416)
T ss_dssp ----CEEE--EEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCS
T ss_pred ----ccce--eecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccc
Confidence 3443 778899999999998 3 79999999999999999 33221111
Q ss_pred ----------cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 344 ----------KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 344 ----------~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
..|.. ++.+++|+|+|++|++++.|+.|++|++..
T Consensus 370 ~~~~~~~~~~~~~~~-~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 370 KPSVFHLQAPTWYGE-PSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp CCCSSCCCCCSTTCC-CSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred ccccccccCCccccC-CccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 01344 688999999999999999999999999853
No 47
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.97 E-value=1.8e-29 Score=295.22 Aligned_cols=299 Identities=11% Similarity=0.085 Sum_probs=241.5
Q ss_pred CCCCceEEecCCCce------eeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEec
Q 001391 2 GKKDLSEWRLDVGQY------LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~~------~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s 74 (1088)
.|+.|++||+.+++. ...+....|+ |+ +++|++|+ ++.|+|||+.+++++..+..|.+ .|.+++|+
T Consensus 76 ~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~--~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~~~~~ 148 (420)
T 3vl1_A 76 LDGHDFLFNTIIRDGSKMLKRADYTAVDTAK--LQ----MRRFILGTTEGDIKVLDSNFNLQREIDQAHVS-EITKLKFF 148 (420)
T ss_dssp ETTEEEEEECCSEETTTTSCSCCEEEEEEEC--SS----SCEEEEEETTSCEEEECTTSCEEEEETTSSSS-CEEEEEEC
T ss_pred cCCcEEEEEecccceeeEEecCCceEEEEEe--cC----CCEEEEEECCCCEEEEeCCCcceeeecccccC-ccEEEEEC
Confidence 588999999998762 1334455678 88 88999988 79999999999998887777666 79999999
Q ss_pred ccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE
Q 001391 75 FINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC 154 (1088)
Q Consensus 75 ~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs 154 (1088)
|+++ .+++++.|++|++||+.. .+.+..+.+|...|.+++|+| ++++|++|+
T Consensus 149 -------~~~~---~l~s~s~d~~i~iwd~~~---------------~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~~ 200 (420)
T 3vl1_A 149 -------PSGE---ALISSSQDMQLKIWSVKD---------------GSNPRTLIGHRATVTDIAIID---RGRNVLSAS 200 (420)
T ss_dssp -------TTSS---EEEEEETTSEEEEEETTT---------------CCCCEEEECCSSCEEEEEEET---TTTEEEEEE
T ss_pred -------CCCC---EEEEEeCCCeEEEEeCCC---------------CcCceEEcCCCCcEEEEEEcC---CCCEEEEEc
Confidence 7763 555556699999999985 345667789999999999999 999999999
Q ss_pred cCCcEEEEEcCCCceEEEeccCC--ceeEEEEee------------------ecCCCCCcEEEEEecCCeEEEEEeccCc
Q 001391 155 SDNSIRVWDISNSSIILEVHSPE--RCLLYSMKL------------------WGDNLEALRIASGTIYNEIIVWKVDWEH 214 (1088)
Q Consensus 155 ~Dg~V~iWd~~~~~~~~~~~~~~--~~~~~s~~~------------------~~~s~~~~~l~sg~~dg~I~vwd~~~~~ 214 (1088)
.|++|++||+.+++.+..+..+. ...+.++.+ ..+++++.+|++|+.||.|++||+.
T Consensus 201 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~--- 277 (420)
T 3vl1_A 201 LDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVF--- 277 (420)
T ss_dssp TTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETT---
T ss_pred CCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECC---
Confidence 99999999999999888876432 223444443 2246789999999999999999998
Q ss_pred cccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE-eCCCCCEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCcccC
Q 001391 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKD 292 (1088)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~v~~sp~g~-~l~s~s~Dg~v~iWd~~~~~~~~ 292 (1088)
....+..+ .+|...|.+++|+|+++ ++++++.|+.|++||+.+++.
T Consensus 278 ------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~-- 325 (420)
T 3vl1_A 278 ------------------------------SKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC-- 325 (420)
T ss_dssp ------------------------------TCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--
T ss_pred ------------------------------CCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC--
Confidence 44444444 46899999999999998 999999999999999988532
Q ss_pred CCCceeeeceeeec-cCcceEEEEEC-CCEEEEEeCCCcEEEEcCCC----------ceeEEEcccCCCCeEEEEEcCCC
Q 001391 293 SDSIEEVGSSVLYG-HNARVWDCCLT-DSFIITAGEDCTCRVWGSDG----------KQLKMIKEHIGRGIWRCLYDSLS 360 (1088)
Q Consensus 293 ~~~~~~i~~~~~~~-h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~~~----------~~~~~~~~h~~~~V~~l~~~~dg 360 (1088)
.+. .+.+ |...|.++.+. +.+|++++.|++|++|++.. .....+..|.+ .|.+++|+|++
T Consensus 326 -----~~~--~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~ 397 (420)
T 3vl1_A 326 -----PVG--EFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDD-AVSQFCYVSDD 397 (420)
T ss_dssp -----CSE--EEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSC-CCCEEEEECCS
T ss_pred -----chh--hhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCc-ceEEEEEccCC
Confidence 222 4444 77789999887 67999999999999999832 22334566777 69999999999
Q ss_pred C---EEEEEeCCCCEEEEEcC
Q 001391 361 S---LLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 361 ~---~l~tg~~Dg~I~iwd~~ 378 (1088)
. .|++.+.+|.+.+|+++
T Consensus 398 ~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 398 ESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp SSSCEEEEEETTTEEEEEESC
T ss_pred CCcceEEEEcCCceEEEEecc
Confidence 9 78888899999999985
No 48
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=4.7e-29 Score=294.36 Aligned_cols=286 Identities=19% Similarity=0.349 Sum_probs=247.2
Q ss_pred CCCCCceEEecCCCc-------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEE
Q 001391 1 MGKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~-------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~ 72 (1088)
+.||+|++||+.+++ |.++|.+++|+ +.+|++|+ |++|++||+.+++.+..+..|.. .|.+++
T Consensus 136 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~ 206 (445)
T 2ovr_B 136 SDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--------DNIIISGSTDRTLKVWNAETGECIHTLYGHTS-TVRCMH 206 (445)
T ss_dssp ETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--------TTEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEE
T ss_pred ECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--------CCEEEEEeCCCeEEEEECCcCcEEEEECCCCC-cEEEEE
Confidence 468999999999887 67889999999 45888877 79999999999999999998776 799999
Q ss_pred ecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEE
Q 001391 73 CNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (1088)
Q Consensus 73 ~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~las 152 (1088)
++ ++ .+++++.|++|++||+.. .+.+..+.+|...|.+++| +++++++
T Consensus 207 ~~-------~~-----~l~s~s~dg~i~~wd~~~---------------~~~~~~~~~~~~~v~~~~~-----~~~~l~~ 254 (445)
T 2ovr_B 207 LH-------EK-----RVVSGSRDATLRVWDIET---------------GQCLHVLMGHVAAVRCVQY-----DGRRVVS 254 (445)
T ss_dssp EE-------TT-----EEEEEETTSEEEEEESSS---------------CCEEEEEECCSSCEEEEEE-----CSSCEEE
T ss_pred ec-------CC-----EEEEEeCCCEEEEEECCC---------------CcEEEEEcCCcccEEEEEE-----CCCEEEE
Confidence 97 43 677777799999999985 3567778899999999998 5678999
Q ss_pred EEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCC
Q 001391 153 GCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (1088)
Q Consensus 153 gs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~ 232 (1088)
|+.|+.|++||+.+++.+..+..+.. .+.++.+ ++..+++|+.||.|++||+.
T Consensus 255 ~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~-----~~~~l~~~~~d~~i~i~d~~--------------------- 307 (445)
T 2ovr_B 255 GAYDFMVKVWDPETETCLHTLQGHTN-RVYSLQF-----DGIHVVSGSLDTSIRVWDVE--------------------- 307 (445)
T ss_dssp EETTSCEEEEEGGGTEEEEEECCCSS-CEEEEEE-----CSSEEEEEETTSCEEEEETT---------------------
T ss_pred EcCCCEEEEEECCCCcEeEEecCCCC-ceEEEEE-----CCCEEEEEeCCCeEEEEECC---------------------
Confidence 99999999999999999988876654 4556665 67899999999999999998
Q ss_pred CCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeec---cCc
Q 001391 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG---HNA 309 (1088)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~---h~~ 309 (1088)
+++.+..+.+|...+.++.++ ++++++++.|+.|++||+.+++ .+. .+.+ |..
T Consensus 308 ------------~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~--------~~~--~~~~~~~~~~ 363 (445)
T 2ovr_B 308 ------------TGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQ--------CLQ--TLQGPNKHQS 363 (445)
T ss_dssp ------------TCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCC--------EEE--EECSTTSCSS
T ss_pred ------------CCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCc--------EEE--EEccCCCCCC
Confidence 677888899999999998874 6799999999999999998753 332 3443 889
Q ss_pred ceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEE-----cccCCCCeEEEEEcCCCCEEEEEeCCCC----EEEEEcCC
Q 001391 310 RVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMI-----KEHIGRGIWRCLYDSLSSLLVTAGFDSA----IKVHQFQA 379 (1088)
Q Consensus 310 ~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~-----~~h~~~~V~~l~~~~dg~~l~tg~~Dg~----I~iwd~~~ 379 (1088)
.|.+++|++.+|++|+.||.|++||+ +++.+..+ ..|.+ .|++++|+|++.++++|+.||+ +.+||++.
T Consensus 364 ~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 364 AVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG-VVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp CEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTC-EEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCc-eEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 99999999999999999999999999 78888877 45666 7999999999999999999998 99999854
No 49
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.7e-30 Score=303.15 Aligned_cols=349 Identities=16% Similarity=0.241 Sum_probs=255.4
Q ss_pred eeeeeEEEEEeccCCCCCCCC-EEEEE----------e-CCeEEEEECCCCe---eEEEEeeeCCcceEEEEeccccccc
Q 001391 16 YLGEISALCFVHLPSHLSSLP-FLLAG----------S-GSQVLLYDLEAGT---LIRPFQVFHGIRLHGISCNFINCTE 80 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~-~laag----------~-d~~I~vwd~~tg~---~~~~~~~~~~~~V~~i~~s~~~~~~ 80 (1088)
+..+|.+++|+ |+ ++ +|++| + |+.|+|||+.+++ .+..+. +. ..|.+++|+
T Consensus 11 ~~~~v~~~~~s--p~----g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~-~~-~~v~~~~~s------ 76 (416)
T 2pm9_A 11 EFSRTATFAWS--HD----KIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQ-VD-SKFNDLDWS------ 76 (416)
T ss_dssp EEEESCBCCBC--SS----SSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCC-CS-SCEEEEEEC------
T ss_pred hhhhcceEeeC--CC----CCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEe-cC-CceEEEEEC------
Confidence 35689999999 98 65 89988 5 6899999999875 444443 33 479999999
Q ss_pred CCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC-CCEEEEEEcCCcE
Q 001391 81 GSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG-NRSLAIGCSDNSI 159 (1088)
Q Consensus 81 ~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d-~~~lasgs~Dg~V 159 (1088)
|+++ .+++++.|+.|++|++..... ..+.+..+.+|...|.+++|+| + +.+|++++.|+.|
T Consensus 77 -~~~~---~l~~~~~dg~v~vw~~~~~~~-----------~~~~~~~~~~h~~~v~~~~~~~---~~~~~l~s~~~dg~v 138 (416)
T 2pm9_A 77 -HNNK---IIAGALDNGSLELYSTNEANN-----------AINSMARFSNHSSSVKTVKFNA---KQDNVLASGGNNGEI 138 (416)
T ss_dssp -SSSS---CEEEEESSSCEEEECCSSTTS-----------CCCEEEECCCSSSCCCEEEECS---SSTTBEEEECSSSCE
T ss_pred -CCCC---eEEEEccCCeEEEeecccccc-----------cccchhhccCCccceEEEEEcC---CCCCEEEEEcCCCeE
Confidence 7773 455556699999999985220 0246778889999999999999 7 8899999999999
Q ss_pred EEEEcCCCc------eEEEe--ccCCceeEEEEeeecCCCC-CcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCC
Q 001391 160 RVWDISNSS------IILEV--HSPERCLLYSMKLWGDNLE-ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGS 230 (1088)
Q Consensus 160 ~iWd~~~~~------~~~~~--~~~~~~~~~s~~~~~~s~~-~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~ 230 (1088)
++||+.+++ ....+ .......+.++++ +++ +.++++++.||.|++||+.
T Consensus 139 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~l~~~~~dg~v~iwd~~------------------- 196 (416)
T 2pm9_A 139 FIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAW---NQSLAHVFASAGSSNFASIWDLK------------------- 196 (416)
T ss_dssp EBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEE---CSSCTTEEEEESSSSCEEEEETT-------------------
T ss_pred EEEECCCCccccccccccccccccCCCCCeeEEEe---CCCCCcEEEEEcCCCCEEEEECC-------------------
Confidence 999999876 33222 1122334556666 466 7899999999999999998
Q ss_pred CCCCceeEecccccceeeeEEEeCC------CCCEEEEEEcCCC-CEEEEEECCC---cEEEEEcCCCcccCCCCceeee
Q 001391 231 SSDFKCFKLQDQQHTAVNLFRLVGH------EGSIFRIEWSSCG-SKLVSVSDDR---SARIWEVRAEYWKDSDSIEEVG 300 (1088)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~gh------~~~V~~v~~sp~g-~~l~s~s~Dg---~v~iWd~~~~~~~~~~~~~~i~ 300 (1088)
..+.+..+..| ...|.+++|+|++ .++++++.|+ .|++||+.+.. ..+.
T Consensus 197 --------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-------~~~~ 255 (416)
T 2pm9_A 197 --------------AKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-------TPLQ 255 (416)
T ss_dssp --------------TTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-------SCSB
T ss_pred --------------CCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-------CCcE
Confidence 55666666665 8899999999997 6899999999 99999998852 1222
Q ss_pred ceeee-ccCcceEEEEEC---CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCC-CEEEEEeCCCCEEE
Q 001391 301 SSVLY-GHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKV 374 (1088)
Q Consensus 301 ~~~~~-~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg-~~l~tg~~Dg~I~i 374 (1088)
.+. +|...|.+++|+ +.+|++++.||+|++||+ +++++..+..|.. .|++++|+|++ .+|++++.||.|++
T Consensus 256 --~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~d~~i~i 332 (416)
T 2pm9_A 256 --TLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN-WCFKTKFAPEAPDLFACASFDNKIEV 332 (416)
T ss_dssp --CCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS-CCCCEEECTTCTTEEEECCSSSEEEE
T ss_pred --EeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC-ceEEEEECCCCCCEEEEEecCCcEEE
Confidence 555 899999999997 579999999999999999 7889999999988 79999999999 89999999999999
Q ss_pred EEcCCCC-CCcccCCccccccCCCcceEEeee-----CC-CccceeeccCCCCceEEEEeccCCeEEEEec-CCeEE
Q 001391 375 HQFQAFL-PGSLESHPEAKEFNGRTEIFSIKI-----PN-FSEQIRLTDSKSEYVRCLHLTSEDTLYIATN-HGYLY 443 (1088)
Q Consensus 375 wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~-~g~i~ 443 (1088)
|++.... .......... .......++.... +. ..........+...+.+++|+|+|++++.+. ++.+.
T Consensus 333 w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~ 408 (416)
T 2pm9_A 333 QTLQNLTNTLDEQETETK-QQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVS 408 (416)
T ss_dssp EESCCCCCSSCC-----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBC
T ss_pred EEccCCCCCccccccccc-ccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEE
Confidence 9995432 2211110000 0000000010000 00 0000111122456788999999998888765 56566
No 50
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=3.6e-28 Score=286.86 Aligned_cols=309 Identities=18% Similarity=0.315 Sum_probs=253.2
Q ss_pred eEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCE
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKR 98 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~ 98 (1088)
++|+.++ +++|++|+ |++|+|||+.+++++..+.+|.+ .|.+++|+ ++ .+++++.|++
T Consensus 122 ~~~~~~~--------g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~-------~~-----~l~s~~~dg~ 180 (445)
T 2ovr_B 122 ITCLQFC--------GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG-GVWSSQMR-------DN-----IIISGSTDRT 180 (445)
T ss_dssp EEEEEEE--------TTEEEEEETTSCEEEEETTTCCEEEECCCCSS-CEEEEEEE-------TT-----EEEEEETTSC
T ss_pred EEEEEEc--------CCEEEEEECCCcEEEEECCCCcEEEEEcCCCC-CEEEEEec-------CC-----EEEEEeCCCe
Confidence 5777766 67899888 79999999999999999998776 79999998 33 6666777999
Q ss_pred EEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCc
Q 001391 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPER 178 (1088)
Q Consensus 99 v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~ 178 (1088)
|++||+.. .+.+..+.+|...|.+++|++ +.|++|+.|++|++||+.+++.+..+..+..
T Consensus 181 i~vwd~~~---------------~~~~~~~~~h~~~v~~~~~~~-----~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~ 240 (445)
T 2ovr_B 181 LKVWNAET---------------GECIHTLYGHTSTVRCMHLHE-----KRVVSGSRDATLRVWDIETGQCLHVLMGHVA 240 (445)
T ss_dssp EEEEETTT---------------TEEEEEECCCSSCEEEEEEET-----TEEEEEETTSEEEEEESSSCCEEEEEECCSS
T ss_pred EEEEECCc---------------CcEEEEECCCCCcEEEEEecC-----CEEEEEeCCCEEEEEECCCCcEEEEEcCCcc
Confidence 99999975 456788889999999999954 6799999999999999999999888876654
Q ss_pred eeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCC
Q 001391 179 CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGS 258 (1088)
Q Consensus 179 ~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~ 258 (1088)
.+.++.+ ++..+++|+.||.|++||+. +...+..+.+|...
T Consensus 241 -~v~~~~~-----~~~~l~~~~~dg~i~iwd~~---------------------------------~~~~~~~~~~~~~~ 281 (445)
T 2ovr_B 241 -AVRCVQY-----DGRRVVSGAYDFMVKVWDPE---------------------------------TETCLHTLQGHTNR 281 (445)
T ss_dssp -CEEEEEE-----CSSCEEEEETTSCEEEEEGG---------------------------------GTEEEEEECCCSSC
T ss_pred -cEEEEEE-----CCCEEEEEcCCCEEEEEECC---------------------------------CCcEeEEecCCCCc
Confidence 3455554 57889999999999999998 67788889999999
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcC-CC
Q 001391 259 IFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DG 337 (1088)
Q Consensus 259 V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~ 337 (1088)
|.++.| ++.++++++.|+.|++||+.++ +.+. .+.+|...+.++.+.+.++++|+.||.|++||+ ++
T Consensus 282 v~~~~~--~~~~l~~~~~d~~i~i~d~~~~--------~~~~--~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~ 349 (445)
T 2ovr_B 282 VYSLQF--DGIHVVSGSLDTSIRVWDVETG--------NCIH--TLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG 349 (445)
T ss_dssp EEEEEE--CSSEEEEEETTSCEEEEETTTC--------CEEE--EECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred eEEEEE--CCCEEEEEeCCCeEEEEECCCC--------CEEE--EEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCC
Confidence 999999 8899999999999999999885 3343 678899999999999999999999999999999 78
Q ss_pred ceeEEEcc---cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceee
Q 001391 338 KQLKMIKE---HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRL 414 (1088)
Q Consensus 338 ~~~~~~~~---h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (1088)
+.+..+.. |.. +|.+++++ +++|++|+.||.|++||+..... +..+... .
T Consensus 350 ~~~~~~~~~~~~~~-~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~-----------------~~~~~~~-------~ 402 (445)
T 2ovr_B 350 QCLQTLQGPNKHQS-AVTCLQFN--KNFVITSSDDGTVKLWDLKTGEF-----------------IRNLVTL-------E 402 (445)
T ss_dssp CEEEEECSTTSCSS-CEEEEEEC--SSEEEEEETTSEEEEEETTTCCE-----------------EEEEEEC-------T
T ss_pred cEEEEEccCCCCCC-CEEEEEEC--CCEEEEEeCCCeEEEEECCCCce-----------------eeeeecc-------c
Confidence 88888876 666 79999995 57999999999999999953210 1111000 0
Q ss_pred ccCCCCceEEEEeccCCeEEEE-ecCCe----EEEEEe
Q 001391 415 TDSKSEYVRCLHLTSEDTLYIA-TNHGY----LYHTKL 447 (1088)
Q Consensus 415 ~~~~~~~V~~l~~s~~~~ll~~-t~~g~----i~~~~~ 447 (1088)
...+.+.|.+++|+|++.++++ +.+|. +..+++
T Consensus 403 ~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df 440 (445)
T 2ovr_B 403 SGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 440 (445)
T ss_dssp TGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred cCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEEC
Confidence 1234568999999999877655 45564 665444
No 51
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.4e-29 Score=283.14 Aligned_cols=280 Identities=16% Similarity=0.180 Sum_probs=236.6
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.++|++++|+ |+ +++|++|+ |+.|+|||+.+++.+..+..|.. .|.+++|+ |+++ .+++++
T Consensus 31 h~~~v~~~~~s--~~----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~-------~~~~---~l~s~~ 93 (369)
T 3zwl_B 31 HERPLTQVKYN--KE----GDLLFSCSKDSSASVWYSLNGERLGTLDGHTG-TIWSIDVD-------CFTK---YCVTGS 93 (369)
T ss_dssp CSSCEEEEEEC--TT----SCEEEEEESSSCEEEEETTTCCEEEEECCCSS-CEEEEEEC-------TTSS---EEEEEE
T ss_pred eeceEEEEEEc--CC----CCEEEEEeCCCEEEEEeCCCchhhhhhhhcCC-cEEEEEEc-------CCCC---EEEEEe
Confidence 66889999999 99 89999988 79999999999999999998776 79999999 7763 555556
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcC-----CcEEEEEcCCCce
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD-----NSIRVWDISNSSI 169 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~D-----g~V~iWd~~~~~~ 169 (1088)
.|+.|++||+... +.+..+. |...|.+++|+| ++++|++++.+ +.|++||+.....
T Consensus 94 ~dg~i~iwd~~~~---------------~~~~~~~-~~~~v~~~~~~~---~~~~l~~~~~~~~~~~g~i~~~d~~~~~~ 154 (369)
T 3zwl_B 94 ADYSIKLWDVSNG---------------QCVATWK-SPVPVKRVEFSP---CGNYFLAILDNVMKNPGSINIYEIERDSA 154 (369)
T ss_dssp TTTEEEEEETTTC---------------CEEEEEE-CSSCEEEEEECT---TSSEEEEEECCBTTBCCEEEEEEEEECTT
T ss_pred CCCeEEEEECCCC---------------cEEEEee-cCCCeEEEEEcc---CCCEEEEecCCccCCCCEEEEEEecCCcc
Confidence 6999999999853 3455555 888999999999 99999999998 9999999976543
Q ss_pred E-----------EEeccCCc-eeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCcee
Q 001391 170 I-----------LEVHSPER-CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCF 237 (1088)
Q Consensus 170 ~-----------~~~~~~~~-~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 237 (1088)
. ..+..+.. ..+.++++ ++++..|++++.||.|++||+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~dg~i~i~d~~-------------------------- 205 (369)
T 3zwl_B 155 THELTKVSEEPIHKIITHEGLDAATVAGW---STKGKYIIAGHKDGKISKYDVS-------------------------- 205 (369)
T ss_dssp TCCEEEECSSCSEEEECCTTCCCEEEEEE---CGGGCEEEEEETTSEEEEEETT--------------------------
T ss_pred ceeecccccceeeeccCCcCccceeEEEE---cCCCCEEEEEcCCCEEEEEECC--------------------------
Confidence 1 11221111 14555555 6789999999999999999998
Q ss_pred Eecccccc-eeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEE
Q 001391 238 KLQDQQHT-AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCL 316 (1088)
Q Consensus 238 ~~~~~~~~-~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~ 316 (1088)
. ...+..+.+|...|.+++|+|++++|++++.|+.|++||+.+.+. + ....+...+.+++|
T Consensus 206 -------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--------~---~~~~~~~~~~~~~~ 267 (369)
T 3zwl_B 206 -------NNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV--------L---KKYETDCPLNTAVI 267 (369)
T ss_dssp -------TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--------E---EEEECSSCEEEEEE
T ss_pred -------CCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCce--------e---eeecCCCCceeEEe
Confidence 4 577888899999999999999999999999999999999988533 2 22337788999999
Q ss_pred C--CCEEEEEeCCC--------------cEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 317 T--DSFIITAGEDC--------------TCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 317 ~--~~~l~sg~~Dg--------------~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+ +.++++++.++ .+++||. .++.+..+.+|.. .|.+++|+|++++|++++.||.|++|+++.
T Consensus 268 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 268 TPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG-PLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp CSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred cCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccC-cEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 8 68999999888 8999999 8889999999988 799999999999999999999999999964
No 52
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=1.4e-28 Score=278.43 Aligned_cols=296 Identities=15% Similarity=0.205 Sum_probs=234.6
Q ss_pred cceeeeccCCCCcEEEEEEecccCC-CCEEEEEEcCCcEEEEEcCCCc-----eEEEeccCCceeEEEEeeecCCCCCcE
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNG-NRSLAIGCSDNSIRVWDISNSS-----IILEVHSPERCLLYSMKLWGDNLEALR 195 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d-~~~lasgs~Dg~V~iWd~~~~~-----~~~~~~~~~~~~~~s~~~~~~s~~~~~ 195 (1088)
+++..+|+||.+.|++|+|+| + +++|+||+.|++|++||+.+.+ ....+.++.. .+.++.+ ++++.+
T Consensus 28 ~~l~~tL~GH~~~V~~v~~sp---~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~-~V~~~~~---s~dg~~ 100 (340)
T 4aow_A 28 MTLRGTLKGHNGWVTQIATTP---QFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSH-FVSDVVI---SSDGQF 100 (340)
T ss_dssp EEEEEEECCCSSCEEEEEECT---TCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSS-CEEEEEE---CTTSSE
T ss_pred eEEEEEECCccCCEEEEEEeC---CCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCC-CEEEEEE---CCCCCE
Confidence 667788999999999999999 6 5799999999999999997654 2444555443 4666766 688999
Q ss_pred EEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEE
Q 001391 196 IASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (1088)
Q Consensus 196 l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s 275 (1088)
|++|+.|+.|++|+.. ..........+...+..+.+++++.++++++
T Consensus 101 l~s~~~d~~i~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s 147 (340)
T 4aow_A 101 ALSGSWDGTLRLWDLT---------------------------------TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGS 147 (340)
T ss_dssp EEEEETTSEEEEEETT---------------------------------TTEEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred EEEEcccccceEEeec---------------------------------ccceeeeecCCCCceeEEEEeecCccceeec
Confidence 9999999999999998 5666777788999999999999999999999
Q ss_pred CCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC----CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCC
Q 001391 276 DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT----DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRG 350 (1088)
Q Consensus 276 ~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~----~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~ 350 (1088)
.|+.+++||..... ... ....+|...+..++|+ ..++++++.|++|++||+ .++.+..+.+|.+ +
T Consensus 148 ~d~~~~~~d~~~~~--------~~~-~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~-~ 217 (340)
T 4aow_A 148 RDKTIKLWNTLGVC--------KYT-VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG-Y 217 (340)
T ss_dssp TTSCEEEECTTSCE--------EEE-ECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSS-C
T ss_pred CCCeEEEEEeCCCc--------eEE-EEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCC-c
Confidence 99999999987642 222 2667899999999997 357899999999999999 7788889999998 7
Q ss_pred eEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccC
Q 001391 351 IWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSE 430 (1088)
Q Consensus 351 V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 430 (1088)
|.+++|+|++++|++|+.||.|++||+.... .+..+ . +...|.+++|+|+
T Consensus 218 v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~-----------------~~~~~------------~-~~~~v~~~~~~~~ 267 (340)
T 4aow_A 218 LNTVTVSPDGSLCASGGKDGQAMLWDLNEGK-----------------HLYTL------------D-GGDIINALCFSPN 267 (340)
T ss_dssp EEEEEECTTSSEEEEEETTCEEEEEETTTTE-----------------EEEEE------------E-CSSCEEEEEECSS
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEeccCc-----------------eeeee------------c-CCceEEeeecCCC
Confidence 9999999999999999999999999995421 11111 1 1246899999999
Q ss_pred CeEEEEecCCeEEEEEeccCCcce-----eEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCC
Q 001391 431 DTLYIATNHGYLYHTKLCDMDSVN-----WNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDV 505 (1088)
Q Consensus 431 ~~ll~~t~~g~i~~~~~~~~~~~~-----~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~ 505 (1088)
+.+++++.++.+..|++....... ........+...|.++++.++ +++|++|+.||.|++|++.++.
T Consensus 268 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d--------g~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 268 RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSAD--------GQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp SSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTT--------SSEEEEEETTSCEEEEEEEC--
T ss_pred CceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCC--------CCEEEEEeCCCEEEEEeCCCcC
Confidence 999999999999866654321110 000011123567888888554 4899999999999999998764
No 53
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.97 E-value=1.2e-28 Score=285.80 Aligned_cols=299 Identities=20% Similarity=0.297 Sum_probs=229.3
Q ss_pred CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCc-----------------eeEEEEeeecCCCC
Q 001391 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPER-----------------CLLYSMKLWGDNLE 192 (1088)
Q Consensus 130 ~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~-----------------~~~~s~~~~~~s~~ 192 (1088)
+|.+.|.+++|+| +|++||+|+ ++++++|++.+++.+..+..+.. ..+.+++| +++
T Consensus 62 ~h~~~V~~v~fsp---dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~---s~d 134 (393)
T 1erj_A 62 DHTSVVCCVKFSN---DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF---SPD 134 (393)
T ss_dssp ECSSCCCEEEECT---TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEE---CTT
T ss_pred CCCCEEEEEEECC---CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEE---CCC
Confidence 6999999999999 999999986 78999999999988877754321 12556666 789
Q ss_pred CcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEE
Q 001391 193 ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLV 272 (1088)
Q Consensus 193 ~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~ 272 (1088)
+.+|++|+.|+.|++||+. +.+.+..+.+|...|.+++|+|++++|+
T Consensus 135 g~~l~s~~~d~~i~iwd~~---------------------------------~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 181 (393)
T 1erj_A 135 GKFLATGAEDRLIRIWDIE---------------------------------NRKIVMILQGHEQDIYSLDYFPSGDKLV 181 (393)
T ss_dssp SSEEEEEETTSCEEEEETT---------------------------------TTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CCEEEEEcCCCeEEEEECC---------------------------------CCcEEEEEccCCCCEEEEEEcCCCCEEE
Confidence 9999999999999999998 6777888999999999999999999999
Q ss_pred EEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcC-CCceeEEE-----
Q 001391 273 SVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQLKMI----- 343 (1088)
Q Consensus 273 s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~-~~~~~~~~----- 343 (1088)
+++.|++|++||+.+++. . ....+...+.+++|+ +.+|++|+.|++|++||+ +++.+..+
T Consensus 182 s~s~d~~v~iwd~~~~~~--------~---~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~ 250 (393)
T 1erj_A 182 SGSGDRTVRIWDLRTGQC--------S---LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE 250 (393)
T ss_dssp EEETTSEEEEEETTTTEE--------E---EEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC----
T ss_pred EecCCCcEEEEECCCCee--------E---EEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccccc
Confidence 999999999999988533 2 223456779999997 479999999999999999 67766666
Q ss_pred --cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCc
Q 001391 344 --KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEY 421 (1088)
Q Consensus 344 --~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (1088)
.+|.. .|++++|+|++++|++|+.|++|++||+....... ....+........+.+|...
T Consensus 251 ~~~~h~~-~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~-----------------~~~~~~~~~~~~~~~~h~~~ 312 (393)
T 1erj_A 251 SGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS-----------------DSKTPNSGTCEVTYIGHKDF 312 (393)
T ss_dssp --CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEEC--------------------------------CEEEEEECCSSC
T ss_pred CCCCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcc-----------------cccCCCCCcceEEEecccCc
Confidence 56777 79999999999999999999999999995421100 00001111223345567788
Q ss_pred eEEEEeccCCeEE-EEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEE
Q 001391 422 VRCLHLTSEDTLY-IATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (1088)
Q Consensus 422 V~~l~~s~~~~ll-~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~ 500 (1088)
|.+++|++++.++ .++.++.+..|++ ...+....+.+| ...+.++++.+... ..++++++++|+.||.|++|+
T Consensus 313 v~~~~~~~~~~~l~sgs~D~~v~iwd~---~~~~~~~~l~~h-~~~v~~v~~~~~~~--~~p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 313 VLSVATTQNDEYILSGSKDRGVLFWDK---KSGNPLLMLQGH-RNSVISVAVANGSS--LGPEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp EEEEEECGGGCEEEEEETTSEEEEEET---TTCCEEEEEECC-SSCEEEEEECSSCT--TCTTCEEEEEEETTSEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEC---CCCeEEEEECCC-CCCEEEEEecCCcC--cCCCCCEEEEECCCCcEEECc
Confidence 9999999988654 5567888885554 333333444555 56788888765320 024568999999999999999
Q ss_pred EcC
Q 001391 501 VVG 503 (1088)
Q Consensus 501 ~~~ 503 (1088)
+..
T Consensus 387 ~~~ 389 (393)
T 1erj_A 387 YKK 389 (393)
T ss_dssp EEE
T ss_pred ccc
Confidence 864
No 54
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.5e-31 Score=312.65 Aligned_cols=305 Identities=11% Similarity=0.031 Sum_probs=216.3
Q ss_pred CCCCCceEEecCCCc-----------eeeeeEEEEEeccCCC-C-CCCCEEEEEe-CCeEEEEECCCCee----------
Q 001391 1 MGKKDLSEWRLDVGQ-----------YLGEISALCFVHLPSH-L-SSLPFLLAGS-GSQVLLYDLEAGTL---------- 56 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~-----------~~~~V~~v~fs~~pd~-~-~~~~~laag~-d~~I~vwd~~tg~~---------- 56 (1088)
|.|++|+|||+.+++ |.+.|.+|+|+ |+. . +.+.+||+|+ |++|+|||+.+++.
T Consensus 180 s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~ws--p~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~ 257 (524)
T 2j04_B 180 KHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWH--EGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEK 257 (524)
T ss_dssp --CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEEC--SSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCS
T ss_pred CCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEEC--CCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecC
Confidence 468999999997764 24679999999 851 0 1247899888 79999999987642
Q ss_pred -EEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcE
Q 001391 57 -IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWV 135 (1088)
Q Consensus 57 -~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I 135 (1088)
...+.+|.. .|.+++|+ +++ .+++++.|++|++||++... .+...+.+|.+.|
T Consensus 258 p~~~l~~h~~-~v~sv~~s-------~~~----~lasgs~DgtV~lWD~~~~~--------------~~~~~~~~H~~~V 311 (524)
T 2j04_B 258 PSLTLSLADS-LITTFDFL-------SPT----TVVCGFKNGFVAEFDLTDPE--------------VPSFYDQVHDSYI 311 (524)
T ss_dssp CSEEECCTTT-CEEEEEES-------SSS----EEEEEETTSEEEEEETTBCS--------------SCSEEEECSSSCE
T ss_pred ceEEEEcCCC-CEEEEEec-------CCC----eEEEEeCCCEEEEEECCCCC--------------CceEEeecccccE
Confidence 235666555 79999998 554 66666779999999998532 2345577999999
Q ss_pred EEE--EEecccCCC-CEEEEEEcCCcEEEEEcCCCceEEEeccCCc-eeEEEEeeecCCCCCcEEEEEecCCeEEEEEec
Q 001391 136 FDV--CFLKVCNGN-RSLAIGCSDNSIRVWDISNSSIILEVHSPER-CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 136 ~~v--~f~p~~~d~-~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~-~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
.+| +|+| ++ .+||||+.|++|+|||+.+++....+..+.. ..++++++ +|++..+++++.|++|++||++
T Consensus 312 ~sv~~~~s~---~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~f---sp~~~~l~s~~~d~tv~lwd~~ 385 (524)
T 2j04_B 312 LSVSTAYSD---FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVY---CPQIYSYIYSDGASSLRAVPSR 385 (524)
T ss_dssp EEEEEECCT---TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEE---ETTTTEEEEECSSSEEEEEETT
T ss_pred EEEEEEcCC---CCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEe---CCCcCeEEEeCCCCcEEEEECc
Confidence 999 5677 77 8999999999999999998776555443322 12345555 5778899999999999999998
Q ss_pred cCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCccc
Q 001391 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK 291 (1088)
Q Consensus 212 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~ 291 (1088)
....+..+.+|.+.|.+|+|+|++++|++|+.|++|++||+..+..
T Consensus 386 ---------------------------------~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~- 431 (524)
T 2j04_B 386 ---------------------------------AAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLL- 431 (524)
T ss_dssp ---------------------------------CTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTT-
T ss_pred ---------------------------------ccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhc-
Confidence 5556677889999999999999999999999999999999865311
Q ss_pred CCCCceeeeceeeeccCcceEEEEECC-CEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCC---EEEEEe
Q 001391 292 DSDSIEEVGSSVLYGHNARVWDCCLTD-SFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSS---LLVTAG 367 (1088)
Q Consensus 292 ~~~~~~~i~~~~~~~h~~~I~~v~~~~-~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~---~l~tg~ 367 (1088)
..........+...|++++|++ ..++....+-.+..|+.++..+..+.+|.. +|++++|+|++. .|++|+
T Consensus 432 -----~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~-~V~~Vafsp~~~~~~~lAsg~ 505 (524)
T 2j04_B 432 -----HGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGI-NITCTKWNETSAGGKCYAFSN 505 (524)
T ss_dssp -----TCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCC-SCCCEEECCSTTTTTEEEEEC
T ss_pred -----cccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCc-eEEEEECCCCCCccHHHHhhc
Confidence 1000000011223578888882 223333333233333345788888999998 799999999964 999999
Q ss_pred CCCCEEEEEcCC
Q 001391 368 FDSAIKVHQFQA 379 (1088)
Q Consensus 368 ~Dg~I~iwd~~~ 379 (1088)
.||.|+||++..
T Consensus 506 ~~g~vrlw~l~~ 517 (524)
T 2j04_B 506 SAGLLTLEYLSL 517 (524)
T ss_dssp TTSEEEEEECSC
T ss_pred cCceEEEEEccc
Confidence 999999999965
No 55
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=1.3e-28 Score=292.06 Aligned_cols=330 Identities=17% Similarity=0.233 Sum_probs=250.1
Q ss_pred eeeeccCCCCcE-EEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecC
Q 001391 124 LVQSLPRLSHWV-FDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (1088)
Q Consensus 124 ~~~~l~~h~~~I-~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d 202 (1088)
....+.+|.+.| .++.+ ++++|++|+.||+|++||+.+++.+..+..+.. .+.++++ ++++ .+++|+.|
T Consensus 113 ~~~~l~~h~~~v~~~~~~-----~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~-~V~~l~~---~~~~-~l~s~s~d 182 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF-----EDNYVITGADDKMIRVYDSINKKFLLQLSGHDG-GVWALKY---AHGG-ILVSGSTD 182 (464)
T ss_dssp EEEEEECCSSSCEEEEEE-----ETTEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEE---CSTT-EEEEEETT
T ss_pred ceEEEcCCCCCcEEEEEE-----CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCc-CEEEEEE---cCCC-EEEEEeCC
Confidence 456788999875 66555 557999999999999999999999998886655 4667776 4555 99999999
Q ss_pred CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEc--CCCCEEEEEECCCcE
Q 001391 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS--SCGSKLVSVSDDRSA 280 (1088)
Q Consensus 203 g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~s--p~g~~l~s~s~Dg~v 280 (1088)
|+|++||+. ++..+..+.+|.+.|.+++|+ +++.++++++.|+.|
T Consensus 183 g~i~vwd~~---------------------------------~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i 229 (464)
T 3v7d_B 183 RTVRVWDIK---------------------------------KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 229 (464)
T ss_dssp SCEEEEETT---------------------------------TTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCE
T ss_pred CCEEEEECC---------------------------------CCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcE
Confidence 999999998 677888999999999999998 578899999999999
Q ss_pred EEEEcCCCcccCCCC---------------ceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEEc
Q 001391 281 RIWEVRAEYWKDSDS---------------IEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIK 344 (1088)
Q Consensus 281 ~iWd~~~~~~~~~~~---------------~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~ 344 (1088)
++||+.+........ ...+. .+.+|...|.++...+.++++|+.||.|++||+ +++.+..+.
T Consensus 230 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 307 (464)
T 3v7d_B 230 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG--VLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS 307 (464)
T ss_dssp EEEECCCCCCC------CCSSEEESCGGGCTTEEE--EECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEeeCCCCcccccccccCCcceEeeccCCCeEEEE--EccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence 999998764310000 00122 678899999999888999999999999999999 788899999
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEE
Q 001391 345 EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRC 424 (1088)
Q Consensus 345 ~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 424 (1088)
+|.. .|.+++|+|++++|++|+.||.|++||+.... .+..+..|
T Consensus 308 ~~~~-~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~-----------------------------~~~~~~~h------ 351 (464)
T 3v7d_B 308 GHTD-RIYSTIYDHERKRCISASMDTTIRIWDLENGE-----------------------------LMYTLQGH------ 351 (464)
T ss_dssp CCSS-CEEEEEEETTTTEEEEEETTSCEEEEETTTTE-----------------------------EEEEECCC------
T ss_pred CCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----------------------------EEEEEeCC------
Confidence 9988 79999999999999999999999999984310 00000111
Q ss_pred EEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCC
Q 001391 425 LHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGD 504 (1088)
Q Consensus 425 l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~ 504 (1088)
...+.++.+. +..+++++.||.|++|++.+.
T Consensus 352 ---------------------------------------~~~v~~~~~~----------~~~l~s~s~dg~v~vwd~~~~ 382 (464)
T 3v7d_B 352 ---------------------------------------TALVGLLRLS----------DKFLVSAAADGSIRGWDANDY 382 (464)
T ss_dssp ---------------------------------------SSCEEEEEEC----------SSEEEEEETTSEEEEEETTTC
T ss_pred ---------------------------------------CCcEEEEEEc----------CCEEEEEeCCCcEEEEECCCC
Confidence 2234444432 257888888999999988764
Q ss_pred CcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEE
Q 001391 505 VHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIM 584 (1088)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It 584 (1088)
... ....... .....++++++++|++++ ||.|++||+..+. +...+...|...|+
T Consensus 383 ~~~------~~~~~~~----~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~--------------~~~~~~~~~~~~v~ 437 (464)
T 3v7d_B 383 SRK------FSYHHTN----LSAITTFYVSDNILVSGS-ENQFNIYNLRSGK--------------LVHANILKDADQIW 437 (464)
T ss_dssp CEE------EEEECTT----CCCEEEEEECSSEEEEEE-TTEEEEEETTTCC--------------EEESCTTTTCSEEE
T ss_pred cee------eeecCCC----CccEEEEEeCCCEEEEec-CCeEEEEECCCCc--------------EEehhhccCCCcEE
Confidence 321 1111111 122356889999999988 8999999998653 22333446889999
Q ss_pred EEEeeeCCCEEEEEcCCCcEEEEeC
Q 001391 585 CLDASFEDEVLFCGDLRGNLVLFPL 609 (1088)
Q Consensus 585 ~l~~spdg~~LatGs~dg~I~Iw~~ 609 (1088)
+++|+ ++.++++++.||.+.+|-+
T Consensus 438 ~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 438 SVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred EEEec-CCEEEEEEEeCCeEEEEEe
Confidence 99998 4556667777877666543
No 56
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=8e-29 Score=284.16 Aligned_cols=300 Identities=14% Similarity=0.175 Sum_probs=234.4
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCe--eEEEEeeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~--~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
|.++|++++|+ |+ +++|++|+ ++.|+|||+.+++ .+..+..|.. .|.+++|+ |+++ .+++
T Consensus 7 ~~~~i~~~~~s--~~----~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~-~v~~~~~~-------~~~~---~l~~ 69 (372)
T 1k8k_C 7 LVEPISCHAWN--KD----RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG-QVTGVDWA-------PDSN---RIVT 69 (372)
T ss_dssp CSSCCCEEEEC--TT----SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSS-CEEEEEEE-------TTTT---EEEE
T ss_pred cCCCeEEEEEC--CC----CCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCC-cccEEEEe-------CCCC---EEEE
Confidence 56789999999 99 89999986 7999999999987 8888888766 79999999 7763 5555
Q ss_pred EECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce---
Q 001391 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI--- 169 (1088)
Q Consensus 93 ~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~--- 169 (1088)
++.|+.|++|++.... ......+..|...|.+++|+| ++++|++|+.|+.|++||+..+..
T Consensus 70 ~~~dg~i~vwd~~~~~-------------~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~v~i~d~~~~~~~~~ 133 (372)
T 1k8k_C 70 CGTDRNAYVWTLKGRT-------------WKPTLVILRINRAARCVRWAP---NEKKFAVGSGSRVISICYFEQENDWWV 133 (372)
T ss_dssp EETTSCEEEEEEETTE-------------EEEEEECCCCSSCEEEEEECT---TSSEEEEEETTSSEEEEEEETTTTEEE
T ss_pred EcCCCeEEEEECCCCe-------------eeeeEEeecCCCceeEEEECC---CCCEEEEEeCCCEEEEEEecCCCccee
Confidence 5669999999997532 334455678999999999999 999999999999999999988763
Q ss_pred EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccc-ccceee
Q 001391 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ-QHTAVN 248 (1088)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-~~~~~~ 248 (1088)
...+..+....+.++.+ ++++.+|++|+.||.|++||+.......... ...|.. ...+..
T Consensus 134 ~~~~~~~~~~~i~~~~~---~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~----------------~~~~~~~~~~~~~ 194 (372)
T 1k8k_C 134 CKHIKKPIRSTVLSLDW---HPNSVLLAAGSCDFKCRIFSAYIKEVEERPA----------------PTPWGSKMPFGEL 194 (372)
T ss_dssp EEEECTTCCSCEEEEEE---CTTSSEEEEEETTSCEEEEECCCTTTSCCCC----------------CBTTBSCCCTTCE
T ss_pred eeeeecccCCCeeEEEE---cCCCCEEEEEcCCCCEEEEEccccccccccc----------------ccccccccchhhh
Confidence 34443444556777777 5788999999999999999986322111000 000000 013566
Q ss_pred eEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCC
Q 001391 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGED 327 (1088)
Q Consensus 249 ~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~D 327 (1088)
+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++ .+. .+..|...|.+++|+ +..+++++.|
T Consensus 195 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--------~~~--~~~~~~~~v~~~~~~~~~~~l~~~~d 264 (372)
T 1k8k_C 195 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM--------AVA--TLASETLPLLAVTFITESSLVAAGHD 264 (372)
T ss_dssp EEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT--------EEE--EEECSSCCEEEEEEEETTEEEEEETT
T ss_pred eEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc--------eeE--EEccCCCCeEEEEEecCCCEEEEEeC
Confidence 77788999999999999999999999999999999998853 343 677899999999998 3444444599
Q ss_pred CcEEEEcC-C--Cc--ee------------------------------------EEE-cccCCCCeEEEEEc-CCC---C
Q 001391 328 CTCRVWGS-D--GK--QL------------------------------------KMI-KEHIGRGIWRCLYD-SLS---S 361 (1088)
Q Consensus 328 g~i~vWd~-~--~~--~~------------------------------------~~~-~~h~~~~V~~l~~~-~dg---~ 361 (1088)
+.|++|++ . ++ .+ ..+ .+|.. +|++++|. ++| .
T Consensus 265 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~g~~~~ 343 (372)
T 1k8k_C 265 CFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKN-SVSQISVLSGGKAKCS 343 (372)
T ss_dssp SSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSS-CEEEEEEEESTTTSCS
T ss_pred CeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccC-CcceeEEecCCCccee
Confidence 99999999 4 31 00 223 47887 79999965 676 8
Q ss_pred EEEEEeCCCCEEEEEcC
Q 001391 362 LLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 362 ~l~tg~~Dg~I~iwd~~ 378 (1088)
+|++|+.||.|++|++.
T Consensus 344 ~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 344 QFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp EEEEEETTSEEEEEEHH
T ss_pred eEEEecCCCceEEEEec
Confidence 99999999999999984
No 57
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=4.3e-29 Score=284.52 Aligned_cols=297 Identities=14% Similarity=0.179 Sum_probs=231.1
Q ss_pred eeeeeEEEEEeccCCCCCCCC-EEEEEe----CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeE
Q 001391 16 YLGEISALCFVHLPSHLSSLP-FLLAGS----GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFE 90 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~-~laag~----d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~ 90 (1088)
|.++|++++|+ |+ +. ++++|+ |+.|+|||+.+++........+...|.+++|+|.. ++++ .+
T Consensus 17 h~~~v~~~~~~--p~----~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~---~l 83 (357)
T 3i2n_A 17 FNYTVFDCKWV--PC----SAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATS----LQQR---YL 83 (357)
T ss_dssp CSSCEEEEEEC--TT----SSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCC----TTTC---CE
T ss_pred CCCceEEEEEc--CC----CceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCC----CCCc---eE
Confidence 67899999999 98 64 555553 79999999999887665553344479999999421 1242 55
Q ss_pred EEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEec---ccCCCCEEEEEEcCCcEEEEEcCCC
Q 001391 91 VALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLK---VCNGNRSLAIGCSDNSIRVWDISNS 167 (1088)
Q Consensus 91 la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p---~~~d~~~lasgs~Dg~V~iWd~~~~ 167 (1088)
++++.|+.|++|++.... ..+..+.+|...|.+++|.+ .++++++|++|+.|+.|++||+.++
T Consensus 84 ~~~~~dg~i~iwd~~~~~--------------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~ 149 (357)
T 3i2n_A 84 ATGDFGGNLHIWNLEAPE--------------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQK 149 (357)
T ss_dssp EEEETTSCEEEECTTSCS--------------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSC
T ss_pred EEecCCCeEEEEeCCCCC--------------ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCC
Confidence 666669999999998532 25677889999999996642 1128999999999999999999988
Q ss_pred c-eEEEeccCC---ceeEEEEeeec-CCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccc
Q 001391 168 S-IILEVHSPE---RCLLYSMKLWG-DNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (1088)
Q Consensus 168 ~-~~~~~~~~~---~~~~~s~~~~~-~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 242 (1088)
+ .+..+..+. ...++++.+.. .++++.++++++.||.|++||++
T Consensus 150 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~------------------------------- 198 (357)
T 3i2n_A 150 DDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLR------------------------------- 198 (357)
T ss_dssp SSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETT-------------------------------
T ss_pred CCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECc-------------------------------
Confidence 6 566665333 23456665422 46889999999999999999998
Q ss_pred ccceeeeEEEeCCCCCEEEEEEcC---CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC-
Q 001391 243 QHTAVNLFRLVGHEGSIFRIEWSS---CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD- 318 (1088)
Q Consensus 243 ~~~~~~~~~~~gh~~~V~~v~~sp---~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~- 318 (1088)
.... .....|...|.+++|+| ++.++++++.|+.|++||+.+.+. ...+......+|...|.+++|++
T Consensus 199 --~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~ 270 (357)
T 3i2n_A 199 --NMAL-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHP-----TKGFASVSEKAHKSTVWQVRHLPQ 270 (357)
T ss_dssp --TTEE-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEET-----TTEEEEEEEECCSSCEEEEEEETT
T ss_pred --cCce-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCc-----ccceeeeccCCCcCCEEEEEECCC
Confidence 4443 33467899999999999 999999999999999999987543 22221124458999999999984
Q ss_pred -C-EEEEEeCCCcEEEEcC-CC-------------------ceeEEEcccCCCCeEEEEEcCCCCEEE-EEeCCCCEEEE
Q 001391 319 -S-FIITAGEDCTCRVWGS-DG-------------------KQLKMIKEHIGRGIWRCLYDSLSSLLV-TAGFDSAIKVH 375 (1088)
Q Consensus 319 -~-~l~sg~~Dg~i~vWd~-~~-------------------~~~~~~~~h~~~~V~~l~~~~dg~~l~-tg~~Dg~I~iw 375 (1088)
. +|++++.||.|++||+ .+ +.+..+..|.. +|++++|+|++++|+ +++.||.|++|
T Consensus 271 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~s~~~d~~i~iw 349 (357)
T 3i2n_A 271 NRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ-PISSLDWSPDKRGLCVCSSFDQTVRVL 349 (357)
T ss_dssp EEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSS-CEEEEEECSSSTTEEEEEETTSEEEEE
T ss_pred CCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCC-CeeEEEEcCCCCeEEEEecCCCcEEEE
Confidence 3 7999999999999998 32 35677888987 799999999999888 89999999999
Q ss_pred EcCC
Q 001391 376 QFQA 379 (1088)
Q Consensus 376 d~~~ 379 (1088)
++..
T Consensus 350 ~~~~ 353 (357)
T 3i2n_A 350 IVTK 353 (357)
T ss_dssp EECC
T ss_pred ECCC
Confidence 9953
No 58
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=5.2e-29 Score=288.78 Aligned_cols=283 Identities=15% Similarity=0.186 Sum_probs=232.9
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCe------eEEEEeeeCCcceEEEEecccccccCCC----c
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT------LIRPFQVFHGIRLHGISCNFINCTEGSV----S 84 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~------~~~~~~~~~~~~V~~i~~s~~~~~~~~d----~ 84 (1088)
|.++|++++|+ | ++|++|+ |+.|+|||+.+++ .+..+..|.. .|.+++|+ |+ +
T Consensus 15 h~~~i~~~~~~--~------~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~-------~~~~~~g 78 (397)
T 1sq9_A 15 HDADIFSVSAC--N------SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS-GLHHVDVL-------QAIERDA 78 (397)
T ss_dssp SSSCEEEEEEC--S------SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTT-CEEEEEEE-------EEEETTT
T ss_pred hhcCeEEEEec--C------CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCC-cEEEEEEe-------cccccCC
Confidence 56899999999 5 4777777 7999999999988 7888887666 79999999 55 4
Q ss_pred ---cceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCC-----CCcEEEEEEe----cccCCCCE-EE
Q 001391 85 ---TRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRL-----SHWVFDVCFL----KVCNGNRS-LA 151 (1088)
Q Consensus 85 ---~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h-----~~~I~~v~f~----p~~~d~~~-la 151 (1088)
+ .+++++.|+.|++|++...... .......+.+| ...|.+++|+ | ++++ |+
T Consensus 79 ~~~~---~l~s~~~dg~i~iw~~~~~~~~----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~l~ 142 (397)
T 1sq9_A 79 FELC---LVATTSFSGDLLFYRITREDET----------KKVIFEKLDLLDSDMKKHSFWALKWGASNDR---LLSHRLV 142 (397)
T ss_dssp EEEE---EEEEEETTSCEEEEEEEECTTT----------CCEEEEEECCSCTTGGGSCEEEEEEECCC-------CEEEE
T ss_pred cccc---EEEEEcCCCCEEEEEccCCccc----------ccccceeecccccccCCCcEEEEEEeeccCC---CCceEEE
Confidence 3 6666677999999999864310 01226677788 5999999999 8 9999 99
Q ss_pred EEEcCCcEEEEEcCC------CceEE-----Eecc------CCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCc
Q 001391 152 IGCSDNSIRVWDISN------SSIIL-----EVHS------PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (1088)
Q Consensus 152 sgs~Dg~V~iWd~~~------~~~~~-----~~~~------~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~ 214 (1088)
+++.|+.|++||+.+ ++.+. .+.. .....+.++++ ++++ ++++|+.||.|++||+.
T Consensus 143 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~-~l~~~~~dg~i~i~d~~--- 215 (397)
T 1sq9_A 143 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI---SERG-LIATGFNNGTVQISELS--- 215 (397)
T ss_dssp EEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEE---CTTS-EEEEECTTSEEEEEETT---
T ss_pred EEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEE---CCCc-eEEEEeCCCcEEEEECC---
Confidence 999999999999988 55554 5532 22334556666 5778 99999999999999998
Q ss_pred cccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC---C---CCCEEEEEEcCCCCEEEEEECC---CcEEEEEc
Q 001391 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG---H---EGSIFRIEWSSCGSKLVSVSDD---RSARIWEV 285 (1088)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g---h---~~~V~~v~~sp~g~~l~s~s~D---g~v~iWd~ 285 (1088)
..+.+..+.+ | ...|.+++|+|++++|++++.| +.|++||+
T Consensus 216 ------------------------------~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~ 265 (397)
T 1sq9_A 216 ------------------------------TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYET 265 (397)
T ss_dssp ------------------------------TTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEET
T ss_pred ------------------------------CCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEEC
Confidence 6777888888 9 9999999999999999999999 99999999
Q ss_pred CCCcccCCCCceeeeceeeec-------------cCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEc-----
Q 001391 286 RAEYWKDSDSIEEVGSSVLYG-------------HNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIK----- 344 (1088)
Q Consensus 286 ~~~~~~~~~~~~~i~~~~~~~-------------h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~----- 344 (1088)
.+++ .+. .+.+ |...|.+++|+ +.+|++++.||.|++||+ +++.+..+.
T Consensus 266 ~~~~--------~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 335 (397)
T 1sq9_A 266 EFGE--------RIG--SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD 335 (397)
T ss_dssp TTCC--------EEE--EECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGG
T ss_pred CCCc--------ccc--eeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCc
Confidence 8853 332 5555 99999999998 689999999999999999 788888888
Q ss_pred -cc---------------CCCCeEEEEEcCCC----------CEEEEEeCCCCEEEEEcC
Q 001391 345 -EH---------------IGRGIWRCLYDSLS----------SLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 345 -~h---------------~~~~V~~l~~~~dg----------~~l~tg~~Dg~I~iwd~~ 378 (1088)
.| .. +|++++|+|++ ++|++++.||.|++|++.
T Consensus 336 ~~~~~~~~~g~~~~~~~~~~-~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 336 IEIEEDILAVDEHGDSLAEP-GVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp CSSGGGCCCBCTTSCBCSSC-CEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred ccchhhhhccccccccccCC-ceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 77 66 79999999998 799999999999999984
No 59
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=9.3e-29 Score=309.11 Aligned_cols=282 Identities=15% Similarity=0.224 Sum_probs=224.9
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCC-----CeeEEEEeeeCCcceEEEEecccccccCCCccceee
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA-----GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t-----g~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~ 89 (1088)
|.+.|++|+|+ |+ ...+|++|+ |++|+|||+.+ +.....+.+|.. .|.+++|+ |+++ .
T Consensus 381 H~~~V~~v~~~--~~---~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~-~v~~v~~s-------~~g~---~ 444 (694)
T 3dm0_A 381 HTDMVTAIATP--ID---NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSH-FVEDVVLS-------SDGQ---F 444 (694)
T ss_dssp CSSCEEEEECC--TT---CCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSS-CEEEEEEC-------TTSS---E
T ss_pred CCceeEEEEec--CC---CCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCC-cEEEEEEC-------CCCC---E
Confidence 77899999999 86 246888888 79999999875 345667788766 79999999 7773 4
Q ss_pred EEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce
Q 001391 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1088)
Q Consensus 90 ~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~ 169 (1088)
+++++.|++|+|||+.. .+....+.+|.+.|.+++|+| ++++|++|+.|++|++||......
T Consensus 445 l~sgs~Dg~v~vwd~~~---------------~~~~~~~~~h~~~v~~~~~s~---~~~~l~s~s~D~~i~iwd~~~~~~ 506 (694)
T 3dm0_A 445 ALSGSWDGELRLWDLAA---------------GVSTRRFVGHTKDVLSVAFSL---DNRQIVSASRDRTIKLWNTLGECK 506 (694)
T ss_dssp EEEEETTSEEEEEETTT---------------TEEEEEEECCSSCEEEEEECT---TSSCEEEEETTSCEEEECTTSCEE
T ss_pred EEEEeCCCcEEEEECCC---------------CcceeEEeCCCCCEEEEEEeC---CCCEEEEEeCCCEEEEEECCCCcc
Confidence 44555699999999974 456778889999999999999 999999999999999999865543
Q ss_pred EEEec--cCCceeEEEEeeecCCCCC--cEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccc
Q 001391 170 ILEVH--SPERCLLYSMKLWGDNLEA--LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (1088)
Q Consensus 170 ~~~~~--~~~~~~~~s~~~~~~s~~~--~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 245 (1088)
..... ..+...+.++++ ++++ ..+++|+.|++|++||+. .
T Consensus 507 ~~~~~~~~~h~~~v~~~~~---~~~~~~~~l~s~s~d~~v~vwd~~---------------------------------~ 550 (694)
T 3dm0_A 507 YTISEGGEGHRDWVSCVRF---SPNTLQPTIVSASWDKTVKVWNLS---------------------------------N 550 (694)
T ss_dssp EEECSSTTSCSSCEEEEEE---CSCSSSCEEEEEETTSCEEEEETT---------------------------------T
T ss_pred eeeccCCCCCCCcEEEEEE---eCCCCcceEEEEeCCCeEEEEECC---------------------------------C
Confidence 33322 123344666766 3443 689999999999999998 6
Q ss_pred eeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEE
Q 001391 246 AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITA 324 (1088)
Q Consensus 246 ~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg 324 (1088)
.+....+.+|.+.|.+++|+|++++|++++.|++|++||+.+++. +. . ..+...|.+++|+ +..++++
T Consensus 551 ~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~--------~~--~-~~~~~~v~~~~~sp~~~~l~~ 619 (694)
T 3dm0_A 551 CKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK--------LY--S-LEANSVIHALCFSPNRYWLCA 619 (694)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEE--------EE--C-CBCSSCEEEEEECSSSSEEEE
T ss_pred CcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce--------EE--E-ecCCCcEEEEEEcCCCcEEEE
Confidence 677788999999999999999999999999999999999988633 22 2 2345679999999 4555556
Q ss_pred eCCCcEEEEcC-CCceeEEEcccCC------------------CCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 325 GEDCTCRVWGS-DGKQLKMIKEHIG------------------RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 325 ~~Dg~i~vWd~-~~~~~~~~~~h~~------------------~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
+.++.|++||+ +++.+..+..+.. -.+++++|+|++++|++|+.||.|++|++.
T Consensus 620 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 620 ATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 66788999999 6666666543221 027889999999999999999999999984
No 60
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.97 E-value=9.1e-28 Score=268.77 Aligned_cols=289 Identities=17% Similarity=0.251 Sum_probs=234.4
Q ss_pred CeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCC
Q 001391 54 GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH 133 (1088)
Q Consensus 54 g~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 133 (1088)
.....++.+|.+ .|.+++|+ |+++ .+++++.|+.|++|++.. .+....+.+|..
T Consensus 13 ~~~~~~~~gh~~-~v~~~~~s-------~~~~---~l~s~~~dg~i~iw~~~~---------------~~~~~~~~~h~~ 66 (312)
T 4ery_A 13 YALKFTLAGHTK-AVSSVKFS-------PNGE---WLASSSADKLIKIWGAYD---------------GKFEKTISGHKL 66 (312)
T ss_dssp CEEEEEECCCSS-CEEEEEEC-------TTSS---EEEEEETTSCEEEEETTT---------------CCEEEEECCCSS
T ss_pred ceeEEEEcccCC-cEEEEEEC-------CCCC---EEEEeeCCCeEEEEeCCC---------------cccchhhccCCC
Confidence 355667777666 79999999 7773 445555699999999874 356677889999
Q ss_pred cEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccC
Q 001391 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (1088)
Q Consensus 134 ~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~ 213 (1088)
.|.+++|+| ++++|++|+.|+.|++||+.+++.+..+..+.. .+.++.+ ++++.+|++|+.|+.|++||++
T Consensus 67 ~v~~~~~~~---~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~---~~~~~~l~s~~~d~~i~iwd~~-- 137 (312)
T 4ery_A 67 GISDVAWSS---DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNF---NPQSNLIVSGSFDESVRIWDVK-- 137 (312)
T ss_dssp CEEEEEECT---TSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEE---CSSSSEEEEEETTSCEEEEETT--
T ss_pred ceEEEEEcC---CCCEEEEECCCCEEEEEECCCCcEEEEEcCCCC-CEEEEEE---cCCCCEEEEEeCCCcEEEEECC--
Confidence 999999999 999999999999999999999999888876654 3556665 6788999999999999999998
Q ss_pred ccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCC
Q 001391 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS 293 (1088)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~ 293 (1088)
+++.+..+.+|...|.+++|+|+++++++++.|+.|++||+.+++
T Consensus 138 -------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~---- 182 (312)
T 4ery_A 138 -------------------------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ---- 182 (312)
T ss_dssp -------------------------------TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----
T ss_pred -------------------------------CCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----
Confidence 677788899999999999999999999999999999999998853
Q ss_pred CCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCC--CeEEEEEcCCCCEEEEEeC
Q 001391 294 DSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR--GIWRCLYDSLSSLLVTAGF 368 (1088)
Q Consensus 294 ~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~--~V~~l~~~~dg~~l~tg~~ 368 (1088)
.+. .....+...+..++|+ +.+|++++.|+.|++||+ +++.+..+.+|... .+......+++.+|++|+.
T Consensus 183 ----~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~ 257 (312)
T 4ery_A 183 ----CLK-TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 257 (312)
T ss_dssp ----EEE-EECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCT
T ss_pred ----eee-EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECC
Confidence 232 1334567789999998 679999999999999999 78888888888762 1222333467889999999
Q ss_pred CCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEe---cCCeEEEE
Q 001391 369 DSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT---NHGYLYHT 445 (1088)
Q Consensus 369 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t---~~g~i~~~ 445 (1088)
||.|++||+.... .+..+.+|...|.+++|+|++.+++++ .++.+..|
T Consensus 258 dg~i~vwd~~~~~-----------------------------~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W 308 (312)
T 4ery_A 258 DNLVYIWNLQTKE-----------------------------IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308 (312)
T ss_dssp TSCEEEEETTTCC-----------------------------EEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEE
T ss_pred CCEEEEEECCCch-----------------------------hhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEe
Confidence 9999999995421 122344566789999999999877765 47777755
Q ss_pred E
Q 001391 446 K 446 (1088)
Q Consensus 446 ~ 446 (1088)
+
T Consensus 309 ~ 309 (312)
T 4ery_A 309 K 309 (312)
T ss_dssp E
T ss_pred c
Confidence 4
No 61
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=2.3e-28 Score=282.22 Aligned_cols=289 Identities=12% Similarity=0.138 Sum_probs=220.6
Q ss_pred eeeeeEEEEEeccCCCCCCC-CEEEEEe-CCeEEEEECCCCeeEEEEee-eCCcceEEEEecccccccCC-CccceeeEE
Q 001391 16 YLGEISALCFVHLPSHLSSL-PFLLAGS-GSQVLLYDLEAGTLIRPFQV-FHGIRLHGISCNFINCTEGS-VSTRVTFEV 91 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~-~~laag~-d~~I~vwd~~tg~~~~~~~~-~~~~~V~~i~~s~~~~~~~~-d~~~~~~~l 91 (1088)
|.+.|++++|+ |+ + ++|++|+ |+.|+|||+.+++....+.. .+...|.+++|+ | +++ .++
T Consensus 72 h~~~v~~~~~~--~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-------~~~~~---~l~ 135 (383)
T 3ei3_B 72 FDRRVTSLEWH--PT----HPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFN-------QFNTN---QLF 135 (383)
T ss_dssp CSSCEEEEEEC--SS----CTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEE-------TTEEE---EEE
T ss_pred CCCCEEEEEEC--CC----CCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeC-------CCCCC---EEE
Confidence 56889999999 98 6 8999988 79999999999888877763 233479999999 6 441 445
Q ss_pred EEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEE
Q 001391 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL 171 (1088)
Q Consensus 92 a~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~ 171 (1088)
+++.|+.|++||+.... ........+|...|.+++|+| ++++|++|+.|+.|++||+ +++.+.
T Consensus 136 s~~~d~~i~iwd~~~~~-------------~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~i~d~-~~~~~~ 198 (383)
T 3ei3_B 136 VSSIRGATTLRDFSGSV-------------IQVFAKTDSWDYWYCCVDVSV---SRQMLATGDSTGRLLLLGL-DGHEIF 198 (383)
T ss_dssp EEETTTEEEEEETTSCE-------------EEEEECCCCSSCCEEEEEEET---TTTEEEEEETTSEEEEEET-TSCEEE
T ss_pred EEeCCCEEEEEECCCCc-------------eEEEeccCCCCCCeEEEEECC---CCCEEEEECCCCCEEEEEC-CCCEEE
Confidence 55569999999998422 333444455668999999999 9999999999999999999 567777
Q ss_pred EeccCCceeEEEEeeecCCCCCc-EEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeE
Q 001391 172 EVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (1088)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~s~~~~-~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1088)
.+..+.. .+.++++ ++++. ++++|+.|+.|++||+.+.+. ....+.
T Consensus 199 ~~~~h~~-~v~~~~~---~~~~~~~l~s~~~d~~i~iwd~~~~~~-----------------------------~~~~~~ 245 (383)
T 3ei3_B 199 KEKLHKA-KVTHAEF---NPRCDWLMATSSVDATVKLWDLRNIKD-----------------------------KNSYIA 245 (383)
T ss_dssp EEECSSS-CEEEEEE---CSSCTTEEEEEETTSEEEEEEGGGCCS-----------------------------TTCEEE
T ss_pred EeccCCC-cEEEEEE---CCCCCCEEEEEeCCCEEEEEeCCCCCc-----------------------------ccceEE
Confidence 7766554 4667776 57777 999999999999999982110 133444
Q ss_pred EEeCCCCCEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeec--eeeeccC----------cceEEEEEC
Q 001391 251 RLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHN----------ARVWDCCLT 317 (1088)
Q Consensus 251 ~~~gh~~~V~~v~~sp-~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~--~~~~~h~----------~~I~~v~~~ 317 (1088)
.+ +|...|.+++|+| ++++|++++.|+.|++||+.+.+. ...+.. .....|. ..+..++|+
T Consensus 246 ~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s 319 (383)
T 3ei3_B 246 EM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK-----PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRY 319 (383)
T ss_dssp EE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS-----CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECB
T ss_pred Ee-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc-----ccccccccccccccccceEEeccCCCCceEEEec
Confidence 44 7999999999999 999999999999999999988654 111110 0111222 234445554
Q ss_pred -CCEEEEEeCCCcEEEEcC-CCceeEEEcccC-CCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 318 -DSFIITAGEDCTCRVWGS-DGKQLKMIKEHI-GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 318 -~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~-~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
+..+ +++.|+.|++||+ +++.+..+.+|. ...+..++|+|++++|++|+ ||.|++|+++
T Consensus 320 ~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 320 PDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRE 381 (383)
T ss_dssp CCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC
T ss_pred CCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecC
Confidence 2223 7789999999999 788999998743 32577779999999999997 9999999985
No 62
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.2e-29 Score=300.46 Aligned_cols=323 Identities=12% Similarity=0.094 Sum_probs=221.8
Q ss_pred CCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEeccc---CCCCEEEEEEcCC
Q 001391 82 SVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC---NGNRSLAIGCSDN 157 (1088)
Q Consensus 82 ~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~---~d~~~lasgs~Dg 157 (1088)
|++ .++++ +.|++|+||++..... .......+.+|.+.|++++|+|.. +++.+||+|+.||
T Consensus 171 ~~~----~~laS~s~D~tI~iWd~~~~~~-----------~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dg 235 (524)
T 2j04_B 171 EHL----EMFDKEKHSSCIQIFKMNTSTL-----------HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEG 235 (524)
T ss_dssp ---------------CEEEEEEEEETTTC-----------CEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTS
T ss_pred hhh----hhhccCCCCceEEEEEccCCCC-----------CceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCC
Confidence 666 45554 4599999999975330 012234466788999999999920 1257999999999
Q ss_pred cEEEEEcCCCceE-----------EEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCcc
Q 001391 158 SIRVWDISNSSII-----------LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (1088)
Q Consensus 158 ~V~iWd~~~~~~~-----------~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s 226 (1088)
+|++||+.++... ..+..+. ..+.++++. ++ ..|++|+.||+|++||+.
T Consensus 236 tvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~-~~v~sv~~s---~~-~~lasgs~DgtV~lWD~~--------------- 295 (524)
T 2j04_B 236 TINFLEIIDNATDVHVFKMCEKPSLTLSLAD-SLITTFDFL---SP-TTVVCGFKNGFVAEFDLT--------------- 295 (524)
T ss_dssp CEEEEECCCCSSSSSEEECCCSCSEEECCTT-TCEEEEEES---SS-SEEEEEETTSEEEEEETT---------------
T ss_pred eEEEEEcCCCccccccceeecCceEEEEcCC-CCEEEEEec---CC-CeEEEEeCCCEEEEEECC---------------
Confidence 9999999876421 2344343 346777773 33 489999999999999998
Q ss_pred CCCCCCCCceeEecccccce-eeeEEEeCCCCCEEEE--EEcCCC-CEEEEEECCCcEEEEEcCCCcccCCCCceeeece
Q 001391 227 AHGSSSDFKCFKLQDQQHTA-VNLFRLVGHEGSIFRI--EWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS 302 (1088)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~gh~~~V~~v--~~sp~g-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~ 302 (1088)
++ .+...+.+|.+.|.+| +|+|++ .+|+|+|.|++|+|||+++.+. ..
T Consensus 296 ------------------~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~--------~~-- 347 (524)
T 2j04_B 296 ------------------DPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT--------TK-- 347 (524)
T ss_dssp ------------------BCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH--------HC--
T ss_pred ------------------CCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc--------cc--
Confidence 32 3456688999999999 578888 8999999999999999987532 22
Q ss_pred eeeccCc--ceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 303 VLYGHNA--RVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 303 ~~~~h~~--~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
.+.+|.. .|++++|+ +..+++++.|++|++||+ .+.++..+.+|.+ +|++++|+|++++|++|+.||+|++|++
T Consensus 348 ~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~-~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 348 TTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRET-TITAIGVSRLHPMVLAGSADGSLIITNA 426 (524)
T ss_dssp EEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSS-CEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred ccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCC-ceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence 4556653 47899998 468999999999999999 7777888899998 7999999999999999999999999998
Q ss_pred CCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEE
Q 001391 378 QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNK 457 (1088)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~ 457 (1088)
....+....... .+ .+...+.+++|+|++..+.....-.+. .+.. ......
T Consensus 427 ~~~~~~~~~~~~------------------------~~-~~~~~v~~v~~sp~g~~~~~~~~~~~~---~~~~-~g~~~~ 477 (524)
T 2j04_B 427 ARRLLHGIKNSS------------------------AT-QKSLRLWKWDYSIKDDKYRIDSSYEVY---PLTV-NDVSKA 477 (524)
T ss_dssp CSSTTTCC-------------------------------CCCCEEEECBCCSSSCEEEECCCCCCC---C----------
T ss_pred hHhhccccccCc------------------------cc-eeeeEEEEeccCCCCCeEEccCCceec---cccc-CCccee
Confidence 654332211000 00 011246688899988755432221111 1110 111112
Q ss_pred eeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcC
Q 001391 458 ILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVG 503 (1088)
Q Consensus 458 ~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~ 503 (1088)
.+.++ ...|.++++.++. ....++|+|+.+|.|+||++..
T Consensus 478 ~l~gh-~~~V~~Vafsp~~-----~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 478 KIDAH-GINITCTKWNETS-----AGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp ----C-CCSCCCEEECCST-----TTTTEEEEECTTSEEEEEECSC
T ss_pred eecCC-CceEEEEECCCCC-----CccHHHHhhccCceEEEEEccc
Confidence 23344 5678888887764 2346999999999999999864
No 63
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-28 Score=289.21 Aligned_cols=347 Identities=12% Similarity=0.112 Sum_probs=240.8
Q ss_pred CCEEEEEeCCeEEEEECCCCeeEEEE-eeeCCcceEEEEecccccccCC-CccceeeEEEEECCCEEEEEEeccCCCCCC
Q 001391 35 LPFLLAGSGSQVLLYDLEAGTLIRPF-QVFHGIRLHGISCNFINCTEGS-VSTRVTFEVALFGEKRVKLFELNFELSPNS 112 (1088)
Q Consensus 35 ~~~laag~d~~I~vwd~~tg~~~~~~-~~~~~~~V~~i~~s~~~~~~~~-d~~~~~~~la~~gd~~v~iw~l~~~~~~~~ 112 (1088)
+..++++. .|+ .+++++..+ .+|.+ .|.+++|+ | +++ .+++++.|++|+|||+.......
T Consensus 39 ~~~~~~~~-----~w~-~~g~~~~~~~~~h~~-~V~~~~~s-------~~~~~---~l~s~s~dg~v~vwd~~~~~~~~- 100 (437)
T 3gre_A 39 QEIVRSPN-----MGN-LRGKLIATLMENEPN-SITSSAVS-------PGETP---YLITGSDQGVIKIWNLKEIIVGE- 100 (437)
T ss_dssp CCCCCCCC-----GGG-CCCCEEEEECTTTTS-CEEEEEEE-------CSSSC---EEEEEETTSEEEEEEHHHHHTTC-
T ss_pred cccccccc-----ccc-ccceEEeeeccCCCC-ceEEEEEC-------CCCCC---EEEEecCCceEEEeECcccccCc-
Confidence 55555544 487 567899999 55444 89999999 7 762 44445569999999997521000
Q ss_pred CCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcC---CCceEEEeccC-----------Cc
Q 001391 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS---NSSIILEVHSP-----------ER 178 (1088)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~---~~~~~~~~~~~-----------~~ 178 (1088)
..+....+ +|...|.+++|+| ++++|++|+.|++|++||+. +++.......+ ..
T Consensus 101 --------~~~~~~~~-~h~~~v~~~~~~~---~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 168 (437)
T 3gre_A 101 --------VYSSSLTY-DCSSTVTQITMIP---NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKN 168 (437)
T ss_dssp --------CCSCSEEE-ECSSCEEEEEECT---TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSC
T ss_pred --------ccceeeec-cCCCCEEEEEEeC---CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccc
Confidence 01122222 5899999999999 99999999999999999995 55554433221 12
Q ss_pred eeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC--CC
Q 001391 179 CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG--HE 256 (1088)
Q Consensus 179 ~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g--h~ 256 (1088)
..+.++.+. .++++.++++|+.||.|++||++ ..+.+..+.+ |.
T Consensus 169 ~~~~~~~~~-~~~~~~~l~~~~~d~~i~iwd~~---------------------------------~~~~~~~~~~~~h~ 214 (437)
T 3gre_A 169 EYAVRMRAF-VNEEKSLLVALTNLSRVIIFDIR---------------------------------TLERLQIIENSPRH 214 (437)
T ss_dssp CCEEEEEEE-ECSSCEEEEEEETTSEEEEEETT---------------------------------TCCEEEEEECCGGG
T ss_pred cCceEEEEE-EcCCCCEEEEEeCCCeEEEEeCC---------------------------------CCeeeEEEccCCCC
Confidence 222233221 35678999999999999999998 6777888888 89
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceee-eccCcceEEEEECC------CEEEEEeCCCc
Q 001391 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL-YGHNARVWDCCLTD------SFIITAGEDCT 329 (1088)
Q Consensus 257 ~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~-~~h~~~I~~v~~~~------~~l~sg~~Dg~ 329 (1088)
+.|.+++|+|++++|++++.|+.|++||++++ +.+. .+ .+|...|.++++++ .+|++|+.||+
T Consensus 215 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--------~~~~--~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~ 284 (437)
T 3gre_A 215 GAVSSICIDEECCVLILGTTRGIIDIWDIRFN--------VLIR--SWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF 284 (437)
T ss_dssp CCEEEEEECTTSCEEEEEETTSCEEEEETTTT--------EEEE--EEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE
T ss_pred CceEEEEECCCCCEEEEEcCCCeEEEEEcCCc--------cEEE--EEecCCCCceEEEEeccccCCCccEEEEEcCCCc
Confidence 99999999999999999999999999999985 3333 33 37888999998763 38999999999
Q ss_pred EEEEcC-CCceeEEEcccC-------------------------CCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC-CCC
Q 001391 330 CRVWGS-DGKQLKMIKEHI-------------------------GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLP 382 (1088)
Q Consensus 330 i~vWd~-~~~~~~~~~~h~-------------------------~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~-~~~ 382 (1088)
|++||+ +++.+..+.+|. ...|++++|+ ++++|++|+.||.|++||+.. ...
T Consensus 285 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~ 363 (437)
T 3gre_A 285 LTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSS 363 (437)
T ss_dssp EEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGC
T ss_pred EEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccc
Confidence 999999 688777776542 1258889999 778999999999999999954 323
Q ss_pred CcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeec
Q 001391 383 GSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVS 462 (1088)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~ 462 (1088)
..+.++. .....+....+++...++... ++............
T Consensus 364 ~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~- 405 (437)
T 3gre_A 364 KAVISPS---------------------------RFSDVFIPTQVTANLTMLLRK----------MKRTSTHSVDDSLY- 405 (437)
T ss_dssp EEEECC-----------------------------CCCEEEEEEEETTEEEEEEE----------CC-------------
T ss_pred eEEeccc---------------------------ccCceEEEEEeecceEEEEEe----------cccccccccCcccc-
Confidence 3222221 011223444455443333322 00000000011122
Q ss_pred CCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEE
Q 001391 463 EGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (1088)
Q Consensus 463 ~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~ 500 (1088)
+...|.++++.+. ++..+|++|+.||.|++|+
T Consensus 406 h~~~I~~i~~~~~------~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 406 HHDIINSISTCEV------DETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -CCCEEEEEEEES------SSSEEEEEEETTSCEEEEC
T ss_pred cccceeeEeeecc------CCceEEEEEcCCceEEEeC
Confidence 3567888887654 1347999999999999994
No 64
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=6.3e-29 Score=284.00 Aligned_cols=325 Identities=12% Similarity=0.158 Sum_probs=236.7
Q ss_pred eeeeeEEEEEeccCCCC-CCCCEEEEEeCCeEEEEECCCCeeEEEEeeeC----CcceEEEEecccccccCCCccceeeE
Q 001391 16 YLGEISALCFVHLPSHL-SSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFH----GIRLHGISCNFINCTEGSVSTRVTFE 90 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~-~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~----~~~V~~i~~s~~~~~~~~d~~~~~~~ 90 (1088)
|.++|++++|+ |+.. +...+++++.++.|+|||+.+++.+..+..+. ...|.+++|+|.. .+++ ..+
T Consensus 17 h~~~v~~i~~~--p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~---~~l 88 (366)
T 3k26_A 17 HNQPLFGVQFN--WHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDS---NTSH---PLL 88 (366)
T ss_dssp TCSCEEEEEEC--TTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECT---TTCC---EEE
T ss_pred CCCceEEEEEe--cccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCC---CCCC---CEE
Confidence 67899999999 8300 12335555668999999999988888777543 2469999999431 0114 144
Q ss_pred EEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceE
Q 001391 91 VALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII 170 (1088)
Q Consensus 91 la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~ 170 (1088)
++++.|+.|++||+.. .+.+..+.+|...|.+++|+| .++.+|++|+.|+.|++||+.+++.+
T Consensus 89 ~~~~~dg~i~v~d~~~---------------~~~~~~~~~~~~~i~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~ 151 (366)
T 3k26_A 89 AVAGSRGIIRIINPIT---------------MQCIKHYVGHGNAINELKFHP--RDPNLLLSVSKDHALRLWNIQTDTLV 151 (366)
T ss_dssp EEEETTCEEEEECTTT---------------CCEEEEEESCCSCEEEEEECS--SCTTEEEEEETTSCEEEEETTTTEEE
T ss_pred EEecCCCEEEEEEchh---------------ceEeeeecCCCCcEEEEEECC--CCCCEEEEEeCCCeEEEEEeecCeEE
Confidence 4455699999999874 456777889999999999998 25689999999999999999999988
Q ss_pred EEec--cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee
Q 001391 171 LEVH--SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1088)
Q Consensus 171 ~~~~--~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 248 (1088)
..+. ......+.++++ ++++.+|++++.||.|++||+.+.+...........++++.......... ....
T Consensus 152 ~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 223 (366)
T 3k26_A 152 AIFGGVEGHRDEVLSADY---DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI-----HFPD 223 (366)
T ss_dssp EEECSTTSCSSCEEEEEE---CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE-----CCCS
T ss_pred EEecccccccCceeEEEE---CCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee-----ccCc
Confidence 8873 233445677777 67889999999999999999985432211100001111111111001110 1123
Q ss_pred eEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCccc------CCCCceeeeceeeeccCcceEEEEEC----C
Q 001391 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK------DSDSIEEVGSSVLYGHNARVWDCCLT----D 318 (1088)
Q Consensus 249 ~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~------~~~~~~~i~~~~~~~h~~~I~~v~~~----~ 318 (1088)
.....+|...|.+++|+ ++++++++.|+.|++||+.+.... .......+. .+.+|...|++++|+ +
T Consensus 224 ~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~ 299 (366)
T 3k26_A 224 FSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILG--RFDYSQCDIWYMRFSMDFWQ 299 (366)
T ss_dssp EEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEE--EEECSSCCSSCCCCEECTTS
T ss_pred cccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheec--cccccCCcEEEEEEcCCCCC
Confidence 34456799999999998 779999999999999999876431 001112233 777899999999887 5
Q ss_pred CEEEEEeCCCcEEEEcC-CCc----eeEEEccc--CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 319 SFIITAGEDCTCRVWGS-DGK----QLKMIKEH--IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 319 ~~l~sg~~Dg~i~vWd~-~~~----~~~~~~~h--~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
.+|++|+.||.|++||+ .++ ....+..| .. +|++++|+|++++|++++.||.|++||+.
T Consensus 300 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 300 KMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGA-AIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCS-CEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cEEEEEecCCcEEEEECCCCCCccccceEEcccccCC-ceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 79999999999999999 443 44577777 45 79999999999999999999999999974
No 65
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=1.3e-27 Score=279.74 Aligned_cols=277 Identities=14% Similarity=0.229 Sum_probs=221.3
Q ss_pred eEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeee-CCcceEEEEecccccccCCCccceeeEEEEECCCE
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKR 98 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~-~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~ 98 (1088)
...|+|| ++ .+||+|.|++|+|||+.+|+++..+..+ +...|.+++|+ |+|+ .+++++.|++
T Consensus 108 ~~~l~wS--~~-----n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fs-------pdg~---~lasgs~Dg~ 170 (420)
T 4gga_A 108 LNLVDWS--SG-----NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWI-------KEGN---YLAVGTSSAE 170 (420)
T ss_dssp CBCEEEC--TT-----SEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEEC-------TTSS---EEEEEETTSC
T ss_pred ceeEEEC--CC-----CEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEEC-------CCCC---EEEEEECCCe
Confidence 4568888 65 6999999999999999999998888753 34469999999 8873 4445556999
Q ss_pred EEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce-EEEeccCC
Q 001391 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-ILEVHSPE 177 (1088)
Q Consensus 99 v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~-~~~~~~~~ 177 (1088)
|+|||++. .+.+..+.+|...|.++++ ++.+|++|+.|+.+++||...... +..+..+.
T Consensus 171 v~iWd~~~---------------~~~~~~~~~h~~~v~~~s~-----~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~ 230 (420)
T 4gga_A 171 VQLWDVQQ---------------QKRLRNMTSHSARVGSLSW-----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS 230 (420)
T ss_dssp EEEEETTT---------------TEEEEEECCCSSCEEEEEE-----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCS
T ss_pred EEEEEcCC---------------CcEEEEEeCCCCceEEEee-----CCCEEEEEeCCCceeEeeecccceeeEEecccc
Confidence 99999985 4678888999999999887 457999999999999999986544 45555554
Q ss_pred ceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCC
Q 001391 178 RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG 257 (1088)
Q Consensus 178 ~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 257 (1088)
.. +..+.+ .+++.++++++.|+.|++|+..+.+. ....+.....|.+
T Consensus 231 ~~-~~~~~~---~~~g~~l~s~~~D~~v~i~~~~~~~~-----------------------------~~~~~~~~~~~~~ 277 (420)
T 4gga_A 231 QE-VCGLRW---APDGRHLASGGNDNLVNVWPSAPGEG-----------------------------GWVPLQTFTQHQG 277 (420)
T ss_dssp SC-EEEEEE---CTTSSEEEEEETTSCEEEEESSCCSS-----------------------------CSCCSEEECCCSS
T ss_pred cc-eeeeee---cCCCCeeeeeeccccceEEeeccccc-----------------------------cceeeeeecccCC
Confidence 43 344444 67899999999999999999872211 2234667788999
Q ss_pred CEEEEEEcCCCC-EEEE--EECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEe--CCCcE
Q 001391 258 SIFRIEWSSCGS-KLVS--VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG--EDCTC 330 (1088)
Q Consensus 258 ~V~~v~~sp~g~-~l~s--~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~--~Dg~i 330 (1088)
.|.+++|+|++. .+++ |+.|++|++||+.+++. +. .+. +...+.++.|. +..+++++ .|+.|
T Consensus 278 ~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~--------~~--~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I 346 (420)
T 4gga_A 278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC--------LS--AVD-AHSQVCSILWSPHYKELISGHGFAQNQL 346 (420)
T ss_dssp CEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE--------EE--EEE-CSSCEEEEEEETTTTEEEEEECTTTCCE
T ss_pred ceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc--------ce--eec-cccceeeeeecCCCCeEEEEEecCCCEE
Confidence 999999999765 5554 45799999999998643 32 333 44567788887 56666654 79999
Q ss_pred EEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 331 RVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 331 ~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
++||+ +++++..+.+|.+ .|++++|+|+|++|+||+.|++|++||+.
T Consensus 347 ~iwd~~~~~~v~~l~gH~~-~V~~l~~spdg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 347 VIWKYPTMAKVAELKGHTS-RVLSLTMSPDGATVASAAADETLRLWRCF 394 (420)
T ss_dssp EEEETTTCCEEEEECCCSS-CEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred EEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 99999 8899999999998 79999999999999999999999999984
No 66
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=4.1e-28 Score=278.00 Aligned_cols=291 Identities=12% Similarity=0.087 Sum_probs=213.8
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEeCC--------eEEEEECCCCee--------EEE--EeeeCCcceEEEEecccccc
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGSGS--------QVLLYDLEAGTL--------IRP--FQVFHGIRLHGISCNFINCT 79 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~d~--------~I~vwd~~tg~~--------~~~--~~~~~~~~V~~i~~s~~~~~ 79 (1088)
.||.|++|+ || +++|++|+++ .|++|++..+.. ... +..++ ..|.++++++..+.
T Consensus 15 ~PV~sv~fs--~d----g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~-~~v~s~~~~~~~~~ 87 (365)
T 4h5i_A 15 YPAYGAKFL--NN----DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDND-DSPTAIDASKGIIL 87 (365)
T ss_dssp SCEEEEEEE--ET----TEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTS-CCCCEEEEETTEEE
T ss_pred CCEEEEEEe--CC----CcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCC-CceEEEEeCCCEEE
Confidence 489999999 99 8999998742 499999876532 111 22223 35777777622110
Q ss_pred cC--CCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceee-----eccCCCCcEEEEEEecccCCCCEEE
Q 001391 80 EG--SVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQ-----SLPRLSHWVFDVCFLKVCNGNRSLA 151 (1088)
Q Consensus 80 ~~--~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~-----~l~~h~~~I~~v~f~p~~~d~~~la 151 (1088)
.+ .++ ..++. ..|+.+|+|++..... ..+... ....+.+.+.+++|+| ||++|+
T Consensus 88 ~g~~~~~----~~l~s~~~d~~~r~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~v~fSp---Dg~~la 149 (365)
T 4h5i_A 88 VGCNENS----TKITQGKGNKHLRKFKYDKVND-----------QLEFLTSVDFDASTNADDYTKLVYISR---EGTVAA 149 (365)
T ss_dssp EECCCCH----HHHHHTSCCCCEEEEEEETTTT-----------EEEEEEEECSSCCCCTTCCEEEEEECT---TSSCEE
T ss_pred EEECCCc----cEEEEecCCCcEEEEEecCCCc-----------eEEEeeeeceeecCCcccCEEEEEEcC---CCCEEE
Confidence 00 000 11111 2378899999875430 011111 2234557799999999 999877
Q ss_pred EEE--cCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCC
Q 001391 152 IGC--SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (1088)
Q Consensus 152 sgs--~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~ 229 (1088)
+++ .|++|+|||+.+++.+..+..+. .+++++| +|++.++++++.+ .+++|+..
T Consensus 150 ~as~~~d~~i~iwd~~~~~~~~~~~~~~--~V~~v~f---spdg~~l~s~s~~-~~~~~~~~------------------ 205 (365)
T 4h5i_A 150 IASSKVPAIMRIIDPSDLTEKFEIETRG--EVKDLHF---STDGKVVAYITGS-SLEVISTV------------------ 205 (365)
T ss_dssp EEESCSSCEEEEEETTTTEEEEEEECSS--CCCEEEE---CTTSSEEEEECSS-CEEEEETT------------------
T ss_pred EEECCCCCEEEEeECCCCcEEEEeCCCC--ceEEEEE---ccCCceEEeccce-eEEEEEec------------------
Confidence 654 68999999999999988876432 3667776 7899999999855 56666655
Q ss_pred CCCCCceeEecccccceeee--EEEeCCCCCEEEEEEcCCCCEEEEEECCC----cEEEEEcCCCcccCCCCceeeecee
Q 001391 230 SSSDFKCFKLQDQQHTAVNL--FRLVGHEGSIFRIEWSSCGSKLVSVSDDR----SARIWEVRAEYWKDSDSIEEVGSSV 303 (1088)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~--~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg----~v~iWd~~~~~~~~~~~~~~i~~~~ 303 (1088)
++..+ ....+|...|.+++|+|+++++++++.|+ .+++|++..... .......
T Consensus 206 ---------------~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~------~~~~~~~ 264 (365)
T 4h5i_A 206 ---------------TGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT------SVLRSKQ 264 (365)
T ss_dssp ---------------TCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE------EEEEEEE
T ss_pred ---------------cCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccccee------cceeeee
Confidence 22222 23457899999999999999999999887 688899876532 2222236
Q ss_pred eeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEE-cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 304 LYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMI-KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 304 ~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~-~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+.+|...|++++|+ +.+|++|+.|++|+|||+ +++++..+ .+|.. +|++++|+|||++|++|+.|++|+||++..
T Consensus 265 ~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~-~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 265 VTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSF-AITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSS-CEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred ecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccC-CEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 78899999999998 689999999999999999 78888875 78988 799999999999999999999999999953
No 67
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.1e-27 Score=261.90 Aligned_cols=276 Identities=16% Similarity=0.228 Sum_probs=229.0
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
|.++|++++|. . +.+|++|+ |+.|+|||+.+++....+..|.. .|.+++|+ |+++ .+++++
T Consensus 17 h~~~v~~~~~~--~-----~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~-~v~~~~~~-------~~~~---~l~~~~ 78 (313)
T 3odt_A 17 HDQDVRDVVAV--D-----DSKVASVSRDGTVRLWSKDDQWLGTVVYTGQG-FLNSVCYD-------SEKE---LLLFGG 78 (313)
T ss_dssp CSSCEEEEEEE--E-----TTEEEEEETTSEEEEEEESSSEEEEEEEECSS-CEEEEEEE-------TTTT---EEEEEE
T ss_pred CCCCcEEEEec--C-----CCEEEEEEcCCcEEEEECCCCEEEEEeecCCc-cEEEEEEC-------CCCC---EEEEec
Confidence 67899999995 3 57788877 79999999999999998888766 79999999 7763 555666
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
.|+.|++|++.... ..+.+..+.+|...|.+++|. +++|++++.|+.|++|| .++....+.
T Consensus 79 ~dg~i~~~~~~~~~------------~~~~~~~~~~~~~~i~~~~~~-----~~~l~~~~~d~~i~~~d--~~~~~~~~~ 139 (313)
T 3odt_A 79 KDTMINGVPLFATS------------GEDPLYTLIGHQGNVCSLSFQ-----DGVVISGSWDKTAKVWK--EGSLVYNLQ 139 (313)
T ss_dssp TTSCEEEEETTCCT------------TSCC-CEECCCSSCEEEEEEE-----TTEEEEEETTSEEEEEE--TTEEEEEEE
T ss_pred CCCeEEEEEeeecC------------CCCcccchhhcccCEEEEEec-----CCEEEEEeCCCCEEEEc--CCcEEEecc
Confidence 69999999998533 235567788999999999994 46899999999999999 566666666
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
.+.. .+.++.+.+ +++..+++++.||.|++||.. .....+..
T Consensus 140 ~~~~-~v~~~~~~~--~~~~~l~~~~~d~~i~i~d~~-----------------------------------~~~~~~~~ 181 (313)
T 3odt_A 140 AHNA-SVWDAKVVS--FSENKFLTASADKTIKLWQND-----------------------------------KVIKTFSG 181 (313)
T ss_dssp CCSS-CEEEEEEEE--TTTTEEEEEETTSCEEEEETT-----------------------------------EEEEEECS
T ss_pred cCCC-ceeEEEEcc--CCCCEEEEEECCCCEEEEecC-----------------------------------ceEEEEec
Confidence 5543 355555532 368899999999999999954 34555666
Q ss_pred -CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEE
Q 001391 255 -HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRV 332 (1088)
Q Consensus 255 -h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~v 332 (1088)
|...|.+++|+|++. +++++.|+.|++||+.++ +.+. .+.+|...|.+++|+ +..|++++.||.|++
T Consensus 182 ~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~--------~~~~--~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~i 250 (313)
T 3odt_A 182 IHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG--------DVLR--TYEGHESFVYCIKLLPNGDIVSCGEDRTVRI 250 (313)
T ss_dssp SCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC--------CEEE--EEECCSSCEEEEEECTTSCEEEEETTSEEEE
T ss_pred cCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch--------hhhh--hhhcCCceEEEEEEecCCCEEEEecCCEEEE
Confidence 999999999999998 999999999999999885 3343 677899999999999 348999999999999
Q ss_pred EcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 333 Wd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
||+ +++.+..+..|.. +|++++|+|+++ +++++.||.|++|+++.
T Consensus 251 wd~~~~~~~~~~~~~~~-~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 251 WSKENGSLKQVITLPAI-SIWSVDCMSNGD-IIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp ECTTTCCEEEEEECSSS-CEEEEEECTTSC-EEEEETTSCEEEEESCG
T ss_pred EECCCCceeEEEeccCc-eEEEEEEccCCC-EEEEeCCCcEEEEeCCC
Confidence 999 8888999999987 799999999998 66799999999999965
No 68
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=3.2e-27 Score=264.41 Aligned_cols=277 Identities=14% Similarity=0.212 Sum_probs=221.6
Q ss_pred eEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeee-CCcceEEEEecccccccCCCccceeeEEEEECCCE
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKR 98 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~-~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~ 98 (1088)
..+|+|| ++ .+||+|.|++|+|||+.+|++++.++.+ +...|.+++|+ |+++ .+++++.|++
T Consensus 28 ~~~l~WS--~~-----~~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~-------~~~~---~l~sgs~Dg~ 90 (318)
T 4ggc_A 28 LNLVDWS--SG-----NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWI-------KEGN---YLAVGTSSAE 90 (318)
T ss_dssp CBCEEEC--TT-----SEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEEC-------TTSS---EEEEEETTSE
T ss_pred ceEEEEC--CC-----CEEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEEC-------CCCC---EEEEEECCCc
Confidence 4679999 87 4899999999999999999999988753 34469999999 7773 4555566999
Q ss_pred EEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce-EEEeccCC
Q 001391 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-ILEVHSPE 177 (1088)
Q Consensus 99 v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~-~~~~~~~~ 177 (1088)
|+||+++. .+.+..+.+|...+.++.+ ++..+++|+.++.+++|+...... +..+..+.
T Consensus 91 v~iw~~~~---------------~~~~~~~~~h~~~~~~~~~-----~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (318)
T 4ggc_A 91 VQLWDVQQ---------------QKRLRNMTSHSARVGSLSW-----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS 150 (318)
T ss_dssp EEEEETTT---------------TEEEEEEECCSSCEEEEEE-----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCS
T ss_pred EEEeecCC---------------ceeEEEecCccceEEEeec-----CCCEEEEEecCCceEeeecCCCceeEEEEcCcc
Confidence 99999985 4677888899999887766 557999999999999999987654 44444444
Q ss_pred ceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCC
Q 001391 178 RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG 257 (1088)
Q Consensus 178 ~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 257 (1088)
. .+..+.+ .+++.++++++.||.|++||+.+.+. ..........|.+
T Consensus 151 ~-~~~~~~~---~~~~~~l~s~~~d~~i~iwd~~~~~~-----------------------------~~~~~~~~~~~~~ 197 (318)
T 4ggc_A 151 Q-EVCGLRW---APDGRHLASGGNDNLVNVWPSAPGEG-----------------------------GWVPLQTFTQHQG 197 (318)
T ss_dssp S-CEEEEEE---CTTSSEEEEEETTSCEEEEESSCBTT-----------------------------BSCCSEEECCCCS
T ss_pred C-ceEEEEE---cCCCCEEEEEecCcceeEEECCCCcc-----------------------------cccceeeecccCC
Confidence 3 3444444 57789999999999999999983221 2234556678899
Q ss_pred CEEEEEEcCCCCEE---EEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEE--eCCCcE
Q 001391 258 SIFRIEWSSCGSKL---VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA--GEDCTC 330 (1088)
Q Consensus 258 ~V~~v~~sp~g~~l---~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg--~~Dg~i 330 (1088)
.|.+++++|++..+ ++++.+++|++||...... .....+...+..+.|. +..++++ +.|++|
T Consensus 198 ~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i 266 (318)
T 4ggc_A 198 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-----------LSAVDAHSQVCSILWSPHYKELISGHGFAQNQL 266 (318)
T ss_dssp CEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE-----------EEEEECSSCEEEEEEETTTTEEEEEECTTTCCE
T ss_pred ceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc-----------cccccceeeeeeeeecccccceEEEEEcCCCEE
Confidence 99999999977543 4567889999999987533 2445667788888887 4566554 489999
Q ss_pred EEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 331 RVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 331 ~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
++||+ +++++..+.+|.+ +|++++|+|++++|+||+.||+|++||+.
T Consensus 267 ~iwd~~~~~~~~~l~gH~~-~V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 267 VIWKYPTMAKVAELKGHTS-RVLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp EEEETTTCCEEEEECCCSS-CEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred EEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 99999 8999999999998 79999999999999999999999999984
No 69
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.96 E-value=1.1e-27 Score=299.40 Aligned_cols=292 Identities=17% Similarity=0.215 Sum_probs=227.4
Q ss_pred cceeeeccCCCCcEEEEEEecccCC-CCEEEEEEcCCcEEEEEcCCC-----ceEEEeccCCceeEEEEeeecCCCCCcE
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNG-NRSLAIGCSDNSIRVWDISNS-----SIILEVHSPERCLLYSMKLWGDNLEALR 195 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d-~~~lasgs~Dg~V~iWd~~~~-----~~~~~~~~~~~~~~~s~~~~~~s~~~~~ 195 (1088)
.+....+.+|.+.|++++|+| + +++|+||+.|++|++||+.+. .....+.+|.. .+.++++ ++++.+
T Consensus 372 l~~~~~l~~H~~~V~~v~~~~---~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~-~v~~v~~---s~~g~~ 444 (694)
T 3dm0_A 372 LVLKGTMRAHTDMVTAIATPI---DNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSH-FVEDVVL---SSDGQF 444 (694)
T ss_dssp SEEEEEEECCSSCEEEEECCT---TCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSS-CEEEEEE---CTTSSE
T ss_pred cchhhhcccCCceeEEEEecC---CCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCC-cEEEEEE---CCCCCE
Confidence 344567889999999999998 5 479999999999999999764 23445555554 3566666 688999
Q ss_pred EEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEE
Q 001391 196 IASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (1088)
Q Consensus 196 l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s 275 (1088)
|++|+.||+|++||+. ++..+..+.+|.+.|.+++|+|++++|+|++
T Consensus 445 l~sgs~Dg~v~vwd~~---------------------------------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s 491 (694)
T 3dm0_A 445 ALSGSWDGELRLWDLA---------------------------------AGVSTRRFVGHTKDVLSVAFSLDNRQIVSAS 491 (694)
T ss_dssp EEEEETTSEEEEEETT---------------------------------TTEEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred EEEEeCCCcEEEEECC---------------------------------CCcceeEEeCCCCCEEEEEEeCCCCEEEEEe
Confidence 9999999999999998 6777888999999999999999999999999
Q ss_pred CCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC----CEEEEEeCCCcEEEEcC-CCceeEEEcccCCCC
Q 001391 276 DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD----SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRG 350 (1088)
Q Consensus 276 ~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~----~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~ 350 (1088)
.|++|++||...... ..+. ....+|...|.+++|++ ..+++++.|++|++||+ .++....+.+|.+ .
T Consensus 492 ~D~~i~iwd~~~~~~------~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~-~ 563 (694)
T 3dm0_A 492 RDRTIKLWNTLGECK------YTIS-EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG-Y 563 (694)
T ss_dssp TTSCEEEECTTSCEE------EEEC-SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS-C
T ss_pred CCCEEEEEECCCCcc------eeec-cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCC-C
Confidence 999999999865321 1111 13357999999999983 47999999999999999 7788888999998 7
Q ss_pred eEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccC
Q 001391 351 IWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSE 430 (1088)
Q Consensus 351 V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 430 (1088)
|++++|+|++++|++|+.||.|++||+.... .+.. +. +...|.+++|+|+
T Consensus 564 v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~-----------------~~~~------------~~-~~~~v~~~~~sp~ 613 (694)
T 3dm0_A 564 VSTVAVSPDGSLCASGGKDGVVLLWDLAEGK-----------------KLYS------------LE-ANSVIHALCFSPN 613 (694)
T ss_dssp EEEEEECTTSSEEEEEETTSBCEEEETTTTE-----------------EEEC------------CB-CSSCEEEEEECSS
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----------------eEEE------------ec-CCCcEEEEEEcCC
Confidence 9999999999999999999999999995321 0111 11 1246899999999
Q ss_pred CeEEEEecCCeEEEEEeccCCcceeEEeeeecC------------------CcceEEEecCCCCCCCcCCCCCeEEEecC
Q 001391 431 DTLYIATNHGYLYHTKLCDMDSVNWNKILQVSE------------------GMPIICMDLLSNEPKYPCGIDDWVALGDG 492 (1088)
Q Consensus 431 ~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~------------------~~~i~~l~~~~~~~~~s~~~~~~la~g~~ 492 (1088)
+.+++++.++.+..|++..... ......+. ...+.+++++ +++.+|++|+.
T Consensus 614 ~~~l~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s--------pdg~~l~sgs~ 682 (694)
T 3dm0_A 614 RYWLCAATEHGIKIWDLESKSI---VEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWS--------ADGSTLFSGYT 682 (694)
T ss_dssp SSEEEEEETTEEEEEETTTTEE---EEEECCCCC----------------CCCCEEEEEEC--------TTSSEEEEEET
T ss_pred CcEEEEEcCCCEEEEECCCCCC---hhhhccccccccccccccccccCCceeEEeeeEEEc--------CCCCEEEEEcC
Confidence 9999998888888665543221 11111110 0124455554 35689999999
Q ss_pred CCCEEEEEEc
Q 001391 493 KGNMTIVRVV 502 (1088)
Q Consensus 493 dg~I~iw~~~ 502 (1088)
||.|++|++.
T Consensus 683 Dg~i~iW~i~ 692 (694)
T 3dm0_A 683 DGVIRVWGIG 692 (694)
T ss_dssp TSEEEEEEC-
T ss_pred CCeEEEEecc
Confidence 9999999975
No 70
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=3.1e-29 Score=288.63 Aligned_cols=301 Identities=12% Similarity=0.079 Sum_probs=220.5
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC--eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG--TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg--~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~ 93 (1088)
.++|++++|+ |+ +++|++|+ |+.|+|||+.++ +++..+..|.. .|.+++|+ |+++ .++++
T Consensus 11 ~~~v~~~~~s--~~----g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~-~v~~~~~s-------~~~~---~l~s~ 73 (377)
T 3dwl_C 11 PKPSYEHAFN--SQ----RTEFVTTTATNQVELYEQDGNGWKHARTFSDHDK-IVTCVDWA-------PKSN---RIVTC 73 (377)
T ss_dssp SSCCSCCEEC--SS----SSEEECCCSSSCBCEEEEETTEEEECCCBCCCSS-CEEEEEEC-------TTTC---CEEEE
T ss_pred CCcEEEEEEC--CC----CCEEEEecCCCEEEEEEccCCceEEEEEEecCCc-eEEEEEEe-------CCCC---EEEEE
Confidence 3689999999 99 89999986 799999999998 78888888766 79999999 7763 55555
Q ss_pred ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc---eE
Q 001391 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS---II 170 (1088)
Q Consensus 94 ~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~---~~ 170 (1088)
+.|++|++||+.... .......+.+|...|.+++|+| ++++|++|+.|+.|++||+.+++ ..
T Consensus 74 s~d~~v~vwd~~~~~------------~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 138 (377)
T 3dwl_C 74 SQDRNAYVYEKRPDG------------TWKQTLVLLRLNRAATFVRWSP---NEDKFAVGSGARVISVCYFEQENDWWVS 138 (377)
T ss_dssp ETTSSEEEC------------------CCCCEEECCCCSSCEEEEECCT---TSSCCEEEESSSCEEECCC-----CCCC
T ss_pred eCCCeEEEEEcCCCC------------ceeeeeEecccCCceEEEEECC---CCCEEEEEecCCeEEEEEECCcccceee
Confidence 669999999998532 1345667788999999999999 99999999999999999999876 36
Q ss_pred EEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccc-cceeee
Q 001391 171 LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ-HTAVNL 249 (1088)
Q Consensus 171 ~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~ 249 (1088)
..+..+....+.++++ ++++.+|++|+.|+.|++||+...+....... . .|... ..+..+
T Consensus 139 ~~~~~~h~~~v~~~~~---~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~------------~~~~~~~~~~~~ 199 (377)
T 3dwl_C 139 KHLKRPLRSTILSLDW---HPNNVLLAAGCADRKAYVLSAYVRDVDAKPEA----S------------VWGSRLPFNTVC 199 (377)
T ss_dssp EEECSSCCSCEEEEEE---CTTSSEEEEEESSSCEEEEEECCSSCC-CCCS----C------------SSCSCCCEEEEE
T ss_pred eEeecccCCCeEEEEE---cCCCCEEEEEeCCCEEEEEEEEecccCCCccc----c------------ccccccchhhhh
Confidence 6666644556778777 67889999999999999999973322111100 0 00000 134555
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC
Q 001391 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED 327 (1088)
Q Consensus 250 ~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D 327 (1088)
..+ +|.+.|.+++|+|++++|++++.|+.|++||+.+++.. ...+. .+.+|...|.+++|+ +.+|++|+.+
T Consensus 200 ~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~----~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~ 272 (377)
T 3dwl_C 200 AEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQP----PRALI--TVKLSQLPLRSLLWANESAIVAAGYNY 272 (377)
T ss_dssp ECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSC----EEECC--CEECSSSCEEEEEEEETTEEEEEESSS
T ss_pred hcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCc----ceeeE--eecCCCCceEEEEEcCCCCEEEEEcCC
Confidence 566 99999999999999999999999999999999986430 11133 788999999999998 5677777655
Q ss_pred CcEEEEcCC-Cc--e-------------------------e---------EEE----------------cccCCCCeEEE
Q 001391 328 CTCRVWGSD-GK--Q-------------------------L---------KMI----------------KEHIGRGIWRC 354 (1088)
Q Consensus 328 g~i~vWd~~-~~--~-------------------------~---------~~~----------------~~h~~~~V~~l 354 (1088)
+.+ +|+.. +. . . ..+ ..|.+ .|+++
T Consensus 273 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~-~i~~~ 350 (377)
T 3dwl_C 273 SPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQN-MIATL 350 (377)
T ss_dssp SEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSS-CEEEE
T ss_pred cEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccc-eeEEE
Confidence 555 77662 11 0 0 111 12777 79999
Q ss_pred EEcCCC-C---EEEEEeCCCCEEEEEc
Q 001391 355 LYDSLS-S---LLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 355 ~~~~dg-~---~l~tg~~Dg~I~iwd~ 377 (1088)
++.+.. . .|+|||.||.|++||+
T Consensus 351 ~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 351 RPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred eccCCCCCceEEEEeecCCCcEEEecC
Confidence 976543 3 6999999999999985
No 71
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.96 E-value=8.2e-28 Score=279.19 Aligned_cols=318 Identities=15% Similarity=0.193 Sum_probs=233.8
Q ss_pred CCCceEEecCCCc-------eeeeeEEEEEeccC-CCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEee-----------
Q 001391 3 KKDLSEWRLDVGQ-------YLGEISALCFVHLP-SHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQV----------- 62 (1088)
Q Consensus 3 d~~i~iWdl~~g~-------~~~~V~~v~fs~~p-d~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~----------- 62 (1088)
++++++|++..++ |.++|++++|+ | + +++|++|+ |+.|+|||+.+++....+..
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s--~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 95 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIE--PVE----GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHP 95 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEEC--TTT----CCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCT
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEe--cCC----CCEEEEEcCCCeEEEEECCCCcccceEecccccccccccc
Confidence 4457788877655 77899999999 9 8 88999988 79999999998876665541
Q ss_pred -eCCcceEEEEecccccccCC-CccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEE
Q 001391 63 -FHGIRLHGISCNFINCTEGS-VSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCF 140 (1088)
Q Consensus 63 -~~~~~V~~i~~s~~~~~~~~-d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f 140 (1088)
.+...|.+++|+ | +++ .+++++.|+.|++||+... +....+. +...+.++.+
T Consensus 96 ~~~~~~v~~~~~~-------~~~~~---~l~s~~~d~~i~iwd~~~~---------------~~~~~~~-~~~~~~~~~~ 149 (408)
T 4a11_B 96 DVHRYSVETVQWY-------PHDTG---MFTSSSFDKTLKVWDTNTL---------------QTADVFN-FEETVYSHHM 149 (408)
T ss_dssp TCCSSCEEEEEEC-------TTCTT---CEEEEETTSEEEEEETTTT---------------EEEEEEE-CSSCEEEEEE
T ss_pred ccCCCcEEEEEEc-------cCCCc---EEEEEeCCCeEEEeeCCCC---------------ccceecc-CCCceeeeEe
Confidence 134479999999 5 441 4555556999999999853 3344443 7788999999
Q ss_pred ecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCc-EEEEEecCCeEEEEEeccCccccCC
Q 001391 141 LKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLL 219 (1088)
Q Consensus 141 ~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~-~l~sg~~dg~I~vwd~~~~~~~~~~ 219 (1088)
+|...++.++++|+.|+.|++||+.+++.+..+..+.. .+.++++ ++++. ++++|+.||.|++||++........
T Consensus 150 ~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~v~~~~~---~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~ 225 (408)
T 4a11_B 150 SPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQ-EILAVSW---SPRYDYILATASADSRVKLWDVRRASGCLIT 225 (408)
T ss_dssp CSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCS-CEEEEEE---CSSCTTEEEEEETTSCEEEEETTCSSCCSEE
T ss_pred ecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCC-cEEEEEE---CCCCCcEEEEEcCCCcEEEEECCCCCccccc
Confidence 99555666999999999999999999988888876554 3566666 56666 6999999999999999832210000
Q ss_pred CCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceee
Q 001391 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEV 299 (1088)
Q Consensus 220 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i 299 (1088)
. ... .............+|...|.+++|+|++++|++++.|+.|++||+.+++.. ...
T Consensus 226 ~-------~~~----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-----~~~ 283 (408)
T 4a11_B 226 L-------DQH----------NGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENT-----LVN 283 (408)
T ss_dssp C-------CTT----------TTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBC-----CCC
T ss_pred c-------ccc----------ccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccc-----eec
Confidence 0 000 000011112223579999999999999999999999999999999986531 111
Q ss_pred eceeeecc-CcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 001391 300 GSSVLYGH-NARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 300 ~~~~~~~h-~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd 376 (1088)
........ .......... +..++.++.|+.|++||+ +++++..+.+|.+ +|++++|+|++++|++++.||.|++|+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~dg~i~iw~ 362 (408)
T 4a11_B 284 YGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK-TVDCCVFQSNFQELYSGSRDCNILAWV 362 (408)
T ss_dssp CCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSS-CEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred cccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCC-eEEEEEEcCCCCEEEEECCCCeEEEEe
Confidence 00000011 1111122222 567788889999999999 8899999999998 799999999999999999999999999
Q ss_pred cCC
Q 001391 377 FQA 379 (1088)
Q Consensus 377 ~~~ 379 (1088)
+..
T Consensus 363 ~~~ 365 (408)
T 4a11_B 363 PSL 365 (408)
T ss_dssp ECC
T ss_pred CCC
Confidence 964
No 72
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.8e-28 Score=288.52 Aligned_cols=296 Identities=14% Similarity=0.155 Sum_probs=223.4
Q ss_pred eeeeeEEEEEeccC-CCCCCCCEEEEEe-CCeEEEEECCC---CeeEE-EEeeeCCcceEEEEecccccccCCCccceee
Q 001391 16 YLGEISALCFVHLP-SHLSSLPFLLAGS-GSQVLLYDLEA---GTLIR-PFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (1088)
Q Consensus 16 ~~~~V~~v~fs~~p-d~~~~~~~laag~-d~~I~vwd~~t---g~~~~-~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~ 89 (1088)
|.++|++++|+ | + +++|++|+ |++|+|||+.+ +.... .+...+...|.+++|+ |+++ .
T Consensus 62 h~~~V~~~~~s--~~~----~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~-------~~~~---~ 125 (437)
T 3gre_A 62 EPNSITSSAVS--PGE----TPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMI-------PNFD---A 125 (437)
T ss_dssp TTSCEEEEEEE--CSS----SCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEEC-------TTSS---E
T ss_pred CCCceEEEEEC--CCC----CCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEe-------CCCC---E
Confidence 56899999999 9 8 88999988 79999999877 44221 2221234479999999 6662 5
Q ss_pred EEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeecc--C--CCCcEEEEEE--ecccCCCCEEEEEEcCCcEEEEE
Q 001391 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP--R--LSHWVFDVCF--LKVCNGNRSLAIGCSDNSIRVWD 163 (1088)
Q Consensus 90 ~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~--~--h~~~I~~v~f--~p~~~d~~~lasgs~Dg~V~iWd 163 (1088)
+++++.|++|++||++.... +.. ........+..+. . +...+.++.+ +| ++.+|++|+.|+.|++||
T Consensus 126 l~s~s~dg~i~vwd~~~~~~-~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~d~~i~iwd 198 (437)
T 3gre_A 126 FAVSSKDGQIIVLKVNHYQQ-ESE---VKFLNCECIRKINLKNFGKNEYAVRMRAFVNE---EKSLLVALTNLSRVIIFD 198 (437)
T ss_dssp EEEEETTSEEEEEEEEEEEE-TTE---EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS---SCEEEEEEETTSEEEEEE
T ss_pred EEEEeCCCEEEEEEeccccC-Cce---eeccccceeEEEEccCcccccCceEEEEEEcC---CCCEEEEEeCCCeEEEEe
Confidence 55556699999999962110 000 0000011222221 2 5677888884 46 889999999999999999
Q ss_pred cCCCceEEEeccC-CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccc
Q 001391 164 ISNSSIILEVHSP-ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (1088)
Q Consensus 164 ~~~~~~~~~~~~~-~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 242 (1088)
+.+++.+..+..+ ....+.++++ ++++.+|++|+.||.|++||++
T Consensus 199 ~~~~~~~~~~~~~~h~~~v~~~~~---s~~~~~l~s~~~dg~i~iwd~~------------------------------- 244 (437)
T 3gre_A 199 IRTLERLQIIENSPRHGAVSSICI---DEECCVLILGTTRGIIDIWDIR------------------------------- 244 (437)
T ss_dssp TTTCCEEEEEECCGGGCCEEEEEE---CTTSCEEEEEETTSCEEEEETT-------------------------------
T ss_pred CCCCeeeEEEccCCCCCceEEEEE---CCCCCEEEEEcCCCeEEEEEcC-------------------------------
Confidence 9999999988864 4456777777 6789999999999999999998
Q ss_pred ccceeeeEEEe-CCCCCEEEEEEcC----CCCEEEEEECCCcEEEEEcCCCcccCCCCceeee-----------------
Q 001391 243 QHTAVNLFRLV-GHEGSIFRIEWSS----CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG----------------- 300 (1088)
Q Consensus 243 ~~~~~~~~~~~-gh~~~V~~v~~sp----~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~----------------- 300 (1088)
.+..+..+. +|...|.+++|+| ++.++++++.|+.|++||+.+++.. ..+.
T Consensus 245 --~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 317 (437)
T 3gre_A 245 --FNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQ-----YAFINSDEQPSMEHFLPIEKG 317 (437)
T ss_dssp --TTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEE-----EEEESSSSCCCGGGGSCBCSS
T ss_pred --CccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEE-----EEEEcCCCCCccceecccccc
Confidence 667777776 8888999996654 6789999999999999999876531 1110
Q ss_pred --ceeeec--cCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEcc-----------------------------
Q 001391 301 --SSVLYG--HNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKE----------------------------- 345 (1088)
Q Consensus 301 --~~~~~~--h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~----------------------------- 345 (1088)
...+.+ |...|++++|+ +.+|++|+.|+.|++||+ +++.+..+.+
T Consensus 318 l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (437)
T 3gre_A 318 LEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTST 397 (437)
T ss_dssp GGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC----
T ss_pred cccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccc
Confidence 001233 78889999998 568999999999999999 6666666654
Q ss_pred --------cCCCCeEEEEEcCC--CCEEEEEeCCCCEEEEE
Q 001391 346 --------HIGRGIWRCLYDSL--SSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 346 --------h~~~~V~~l~~~~d--g~~l~tg~~Dg~I~iwd 376 (1088)
|.. .|.+++++++ +.+|++|+.||.|++|+
T Consensus 398 ~~~~~~~~h~~-~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 398 HSVDDSLYHHD-IINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ---------CC-CEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccCccccccc-ceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 666 7999999988 77999999999999995
No 73
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.96 E-value=2.7e-27 Score=263.02 Aligned_cols=254 Identities=17% Similarity=0.247 Sum_probs=198.3
Q ss_pred EEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEE
Q 001391 58 RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFD 137 (1088)
Q Consensus 58 ~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~ 137 (1088)
..+.+|.+ .|.+++|+ |+|+ .+++++.|++|+||++.... .+++..+.+|.+.|++
T Consensus 3 ~~~~~h~~-~V~~~~~s-------~~g~---~las~s~D~~v~iw~~~~~~-------------~~~~~~l~gH~~~V~~ 58 (297)
T 2pm7_B 3 VIANAHNE-MIHDAVMD-------YYGK---RMATCSSDKTIKIFEVEGET-------------HKLIDTLTGHEGPVWR 58 (297)
T ss_dssp EECCSCSS-CEEEEEEC-------TTSS---EEEEEETTSCEEEEEBCSSC-------------BCCCEEECCCSSCEEE
T ss_pred eeccCCcC-ceEEEEEC-------CCCC---EEEEEeCCCEEEEEecCCCC-------------cEEEEEEccccCCeEE
Confidence 34556655 79999999 7873 44455569999999997432 4567888999999999
Q ss_pred EEEecccCCCCEEEEEEcCCcEEEEEcCCCc--eEEEeccCCceeEEEEeeecCCCC--CcEEEEEecCCeEEEEEeccC
Q 001391 138 VCFLKVCNGNRSLAIGCSDNSIRVWDISNSS--IILEVHSPERCLLYSMKLWGDNLE--ALRIASGTIYNEIIVWKVDWE 213 (1088)
Q Consensus 138 v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~--~~~~~~~~~~~~~~s~~~~~~s~~--~~~l~sg~~dg~I~vwd~~~~ 213 (1088)
++|+|. .++++|++|+.|++|++||+.+++ .+..+..+.. .+.++++ +|+ +.+|++|+.|+.|++||+++.
T Consensus 59 v~~s~~-~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~-~v~~v~~---~p~~~g~~l~s~s~d~~v~~wd~~~~ 133 (297)
T 2pm7_B 59 VDWAHP-KFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSA-SVNSVQW---APHEYGPMLLVASSDGKVSVVEFKEN 133 (297)
T ss_dssp EEECCG-GGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSS-CEEEEEE---CCGGGCSEEEEEETTSEEEEEEBCSS
T ss_pred EEecCC-CcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCC-ceeEEEe---CcCCCCcEEEEEECCCcEEEEEecCC
Confidence 999861 137899999999999999998774 4445544433 4667776 454 789999999999999999711
Q ss_pred ccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCC-------------CCEEEEEECCCcE
Q 001391 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC-------------GSKLVSVSDDRSA 280 (1088)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~-------------g~~l~s~s~Dg~v 280 (1088)
.......+.+|...|.+++|+|+ +++|++++.|++|
T Consensus 134 -------------------------------~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v 182 (297)
T 2pm7_B 134 -------------------------------GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 182 (297)
T ss_dssp -------------------------------SCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCE
T ss_pred -------------------------------CceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcE
Confidence 01123567899999999999997 5799999999999
Q ss_pred EEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC-----CEEEEEeCCCcEEEEcCCC-c---eeEEE--cccCCC
Q 001391 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-----SFIITAGEDCTCRVWGSDG-K---QLKMI--KEHIGR 349 (1088)
Q Consensus 281 ~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~-----~~l~sg~~Dg~i~vWd~~~-~---~~~~~--~~h~~~ 349 (1088)
++||+.+... ..... ..+.+|...|.+++|++ .+|++++.|++|++||+.. . ....+ ..|..
T Consensus 183 ~lwd~~~~~~----~~~~~--~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~- 255 (297)
T 2pm7_B 183 KIWKYNSDAQ----TYVLE--STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD- 255 (297)
T ss_dssp EEEEEETTTT----EEEEE--EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSS-
T ss_pred EEEEEcCCCc----eEEEE--EEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCC-
Confidence 9999987532 01122 27789999999999984 5899999999999999832 1 12233 45666
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 350 ~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
.|++++|+|++++|++++.||.|++|+..
T Consensus 256 ~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 256 VLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred cEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 69999999999999999999999999984
No 74
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.96 E-value=3.2e-27 Score=269.75 Aligned_cols=305 Identities=14% Similarity=0.212 Sum_probs=230.6
Q ss_pred EEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeec--cCCCCc
Q 001391 57 IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL--PRLSHW 134 (1088)
Q Consensus 57 ~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l--~~h~~~ 134 (1088)
+..+...+...|.+++|+|.. +++. ..++++++++.|++|++.... ....+... ..|...
T Consensus 10 ~~~~~~~h~~~v~~i~~~p~~----~~~~--~~~~~~~~~~~v~vw~~~~~~------------~~~~~~~~~~~~~~~~ 71 (366)
T 3k26_A 10 VNSLKEDHNQPLFGVQFNWHS----KEGD--PLVFATVGSNRVTLYECHSQG------------EIRLLQSYVDADADEN 71 (366)
T ss_dssp EEEEECTTCSCEEEEEECTTC----CTTS--CEEEEEEETTEEEEEEECGGG------------CEEEEEEEECSCTTCC
T ss_pred EEEeecCCCCceEEEEEeccc----CCCC--ceEEEECCCCEEEEEEcCCCc------------EEEeeeeccccCCCCc
Confidence 334443344589999999420 1221 257777778999999998533 12222222 237788
Q ss_pred EEEEEEecccCC----CCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCC-CCcEEEEEecCCeEEEEE
Q 001391 135 VFDVCFLKVCNG----NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWK 209 (1088)
Q Consensus 135 I~~v~f~p~~~d----~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~-~~~~l~sg~~dg~I~vwd 209 (1088)
|.+++|+| + +.+|++|+.||.|++||+.+++.+..+..+.. .+.++++ ++ ++.+|++|+.||.|++||
T Consensus 72 v~~~~~~~---~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-~i~~~~~---~~~~~~~l~s~~~dg~i~iwd 144 (366)
T 3k26_A 72 FYTCAWTY---DSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGN-AINELKF---HPRDPNLLLSVSKDHALRLWN 144 (366)
T ss_dssp EEEEEEEE---CTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCS-CEEEEEE---CSSCTTEEEEEETTSCEEEEE
T ss_pred EEEEEecc---CCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCC-cEEEEEE---CCCCCCEEEEEeCCCeEEEEE
Confidence 99999999 6 67999999999999999999999888876544 4667776 56 789999999999999999
Q ss_pred eccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE---eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 001391 210 VDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL---VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR 286 (1088)
Q Consensus 210 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~ 286 (1088)
+. .++.+..+ .+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 145 ~~---------------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 191 (366)
T 3k26_A 145 IQ---------------------------------TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 191 (366)
T ss_dssp TT---------------------------------TTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESC
T ss_pred ee---------------------------------cCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECC
Confidence 98 56677777 6899999999999999999999999999999998
Q ss_pred CCcccCCC---------------C-----ceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcC-CCc-------
Q 001391 287 AEYWKDSD---------------S-----IEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGK------- 338 (1088)
Q Consensus 287 ~~~~~~~~---------------~-----~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~------- 338 (1088)
+++..... . ...+ ....+|...|.+++|++.++++++.|+.|++||+ .++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 269 (366)
T 3k26_A 192 SKRMMNAIKESYDYNPNKTNRPFISQKIHFPDF--STRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIK 269 (366)
T ss_dssp SHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSE--EECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCC
T ss_pred CCccccccceeEEecCCCCcccccceeeccCcc--ccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccc
Confidence 75431000 0 0001 1334599999999999999999999999999998 432
Q ss_pred -------eeEEEcccCCCCeEEEEEcCC--CCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCc
Q 001391 339 -------QLKMIKEHIGRGIWRCLYDSL--SSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFS 409 (1088)
Q Consensus 339 -------~~~~~~~h~~~~V~~l~~~~d--g~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (1088)
.+..+..|.. .|++++|+|+ +++|++|+.||.|++||+.......
T Consensus 270 ~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~------------------------- 323 (366)
T 3k26_A 270 PSESNVTILGRFDYSQC-DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK------------------------- 323 (366)
T ss_dssp TTCCCEEEEEEEECSSC-CSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGG-------------------------
T ss_pred cCCcchheeccccccCC-cEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcc-------------------------
Confidence 3677888888 6999999999 9999999999999999996431100
Q ss_pred cceeeccCC--CCceEEEEeccCCeEE-EEecCCeEEEEEe
Q 001391 410 EQIRLTDSK--SEYVRCLHLTSEDTLY-IATNHGYLYHTKL 447 (1088)
Q Consensus 410 ~~~~~~~~~--~~~V~~l~~s~~~~ll-~~t~~g~i~~~~~ 447 (1088)
.....+..+ ...|++++|+|++.++ +++.+|.+..|++
T Consensus 324 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 324 AKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp CEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred ccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 011122333 5789999999998655 4567888886654
No 75
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.96 E-value=9.6e-27 Score=270.57 Aligned_cols=274 Identities=14% Similarity=0.207 Sum_probs=223.1
Q ss_pred eEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEE
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRV 99 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v 99 (1088)
+.+++|+ ++ .+++++.|+.|+|||+.+++....+...+...|.+++|+ |+++ .+++++.|+.|
T Consensus 96 ~~~~~~s--~~-----~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s-------~~~~---~l~~~~~dg~i 158 (401)
T 4aez_A 96 LNLLDWS--NL-----NVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWS-------HDGS---FLSVGLGNGLV 158 (401)
T ss_dssp CBCEEEC--TT-----SEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEEC-------TTSS---EEEEEETTSCE
T ss_pred EEEEeec--CC-----CEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEEC-------CCCC---EEEEECCCCeE
Confidence 5567777 53 566667799999999999999888887556689999999 7773 55555669999
Q ss_pred EEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC-CceEEEeccCCc
Q 001391 100 KLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN-SSIILEVHSPER 178 (1088)
Q Consensus 100 ~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~-~~~~~~~~~~~~ 178 (1088)
++||+.. .+.+..+.+|...|.+++|++ .+|++|+.|+.|++||+.. ...+..+..+..
T Consensus 159 ~iwd~~~---------------~~~~~~~~~~~~~v~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 218 (401)
T 4aez_A 159 DIYDVES---------------QTKLRTMAGHQARVGCLSWNR-----HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS 218 (401)
T ss_dssp EEEETTT---------------CCEEEEECCCSSCEEEEEEET-----TEEEEEETTSEEEEEETTSSSCEEEEEECCSS
T ss_pred EEEECcC---------------CeEEEEecCCCCceEEEEECC-----CEEEEEcCCCCEEEEecccCcceeeEEcCCCC
Confidence 9999974 456778889999999999954 6999999999999999984 555666655543
Q ss_pred eeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCC
Q 001391 179 CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGS 258 (1088)
Q Consensus 179 ~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~ 258 (1088)
.+.++.+ ++++.+|++|+.||.|++||+. ....+..+.+|...
T Consensus 219 -~v~~~~~---~~~~~~l~s~~~d~~v~iwd~~---------------------------------~~~~~~~~~~~~~~ 261 (401)
T 4aez_A 219 -EVCGLAW---RSDGLQLASGGNDNVVQIWDAR---------------------------------SSIPKFTKTNHNAA 261 (401)
T ss_dssp -CEEEEEE---CTTSSEEEEEETTSCEEEEETT---------------------------------CSSEEEEECCCSSC
T ss_pred -CeeEEEE---cCCCCEEEEEeCCCeEEEccCC---------------------------------CCCccEEecCCcce
Confidence 4666766 5789999999999999999998 66778888899999
Q ss_pred EEEEEEcCCCC-EEEEEE--CCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEE--eCCCcEE
Q 001391 259 IFRIEWSSCGS-KLVSVS--DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA--GEDCTCR 331 (1088)
Q Consensus 259 V~~v~~sp~g~-~l~s~s--~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg--~~Dg~i~ 331 (1088)
|.+++|+|++. .+++++ .|+.|++||+.+++. + ....|...|.+++|+ +.+++++ +.||.|+
T Consensus 262 v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~--------~---~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~ 330 (401)
T 4aez_A 262 VKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR--------V---NTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLS 330 (401)
T ss_dssp CCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE--------E---EEEECSSCEEEEEECSSSSEEEEEECTTTCEEE
T ss_pred EEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE--------E---EEEeCCCcEEEEEECCCCCeEEEEeecCCCcEE
Confidence 99999999775 556655 699999999988533 3 233467789999998 5788884 4899999
Q ss_pred EEcC-CCcee--EEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 332 VWGS-DGKQL--KMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 332 vWd~-~~~~~--~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+|++ +++.. ..+.+|.+ .|.+++|+|++.+|++++.||.|++|++..
T Consensus 331 v~~~~~~~~~~~~~~~~h~~-~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 331 IWSYSSSGLTKQVDIPAHDT-RVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp EEEEETTEEEEEEEEECCSS-CCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred EEecCCccceeEEEecCCCC-CEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 9999 54443 34678887 699999999999999999999999999954
No 76
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=2.6e-27 Score=278.64 Aligned_cols=269 Identities=19% Similarity=0.292 Sum_probs=226.5
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
+...|.|++|. +++|++|+ |+.|++||+.+++.+..+.+|.+ .|.+++|. .. .+++++
T Consensus 132 ~~~~v~~~~~d--------~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~~-------~~-----~l~sg~ 190 (435)
T 1p22_A 132 TSKGVYCLQYD--------DQKIVSGLRDNTIKIWDKNTLECKRILTGHTG-SVLCLQYD-------ER-----VIITGS 190 (435)
T ss_dssp SCCCEEEEECC--------SSEEEEEESSSCEEEEESSSCCEEEEECCCSS-CEEEEECC-------SS-----EEEEEE
T ss_pred CCCcEEEEEEC--------CCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCC-cEEEEEEC-------CC-----EEEEEc
Confidence 44668888876 67888887 79999999999999999998776 79999885 32 566667
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceE---E
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII---L 171 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~---~ 171 (1088)
.|++|++||+.. .+.+..+.+|...|.+++|++ ..|++|+.|+.|++||+.++... .
T Consensus 191 ~dg~i~vwd~~~---------------~~~~~~~~~h~~~v~~l~~~~-----~~l~s~s~dg~i~vwd~~~~~~~~~~~ 250 (435)
T 1p22_A 191 SDSTVRVWDVNT---------------GEMLNTLIHHCEAVLHLRFNN-----GMMVTCSKDRSIAVWDMASPTDITLRR 250 (435)
T ss_dssp TTSCEEEEESSS---------------CCEEEEECCCCSCEEEEECCT-----TEEEEEETTSCEEEEECSSSSCCEEEE
T ss_pred CCCeEEEEECCC---------------CcEEEEEcCCCCcEEEEEEcC-----CEEEEeeCCCcEEEEeCCCCCCceeee
Confidence 799999999985 456778889999999999965 58999999999999999987654 3
Q ss_pred EeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEE
Q 001391 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (1088)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1088)
.+..+. ..+.++.+ ++..+++|+.||.|++||+. ++..+..
T Consensus 251 ~~~~~~-~~v~~~~~-----~~~~l~s~~~dg~i~vwd~~---------------------------------~~~~~~~ 291 (435)
T 1p22_A 251 VLVGHR-AAVNVVDF-----DDKYIVSASGDRTIKVWNTS---------------------------------TCEFVRT 291 (435)
T ss_dssp EECCCS-SCEEEEEE-----ETTEEEEEETTSEEEEEETT---------------------------------TCCEEEE
T ss_pred EecCCC-CcEEEEEe-----CCCEEEEEeCCCeEEEEECC---------------------------------cCcEEEE
Confidence 344443 34556654 57899999999999999998 6778888
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEE
Q 001391 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCR 331 (1088)
Q Consensus 252 ~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~ 331 (1088)
+.+|...|.++.| +++++++++.|+.|++||+.++ +.+. .+.+|...|.+++|.+.+|++|+.||.|+
T Consensus 292 ~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~--------~~~~--~~~~h~~~v~~~~~~~~~l~sg~~dg~i~ 359 (435)
T 1p22_A 292 LNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG--------ACLR--VLEGHEELVRCIRFDNKRIVSGAYDGKIK 359 (435)
T ss_dssp EECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTC--------CEEE--EECCCSSCEEEEECCSSEEEEEETTSCEE
T ss_pred EcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCC--------CEEE--EEeCCcCcEEEEEecCCEEEEEeCCCcEE
Confidence 9999999999999 4689999999999999999985 3343 77889999999999999999999999999
Q ss_pred EEcC-CCc---------eeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 332 VWGS-DGK---------QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 332 vWd~-~~~---------~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+||+ .++ .+..+.+|.+ +|.+++| ++.+|++|+.||.|++||+..
T Consensus 360 vwd~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 360 VWDLVAALDPRAPAGTLCLRTLVEHSG-RVFRLQF--DEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp EEEHHHHTSTTSCTTTTEEEEECCCSS-CCCCEEE--CSSCEEECCSSSEEEEEC---
T ss_pred EEECCCCCCccccccchheeeccCCCC-CeEEEEe--CCCEEEEEeCCCEEEEEECCC
Confidence 9998 333 7888999998 7999999 678899999999999999954
No 77
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.7e-28 Score=284.49 Aligned_cols=323 Identities=9% Similarity=0.023 Sum_probs=229.1
Q ss_pred CceeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 14 GQYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 14 g~~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
.+....|.+|+|+ || |+++|+++ |++|+ |...++.+ .+|.. .|++++|+ |+|
T Consensus 12 ~~~~~~v~sv~~S--pD----G~~iASas~D~TV~--d~~~~~~l---~gh~~-~v~~V~Fs-------Pdg-------- 64 (588)
T 2j04_A 12 KEFEDWKNNLTWA--RD----GTLYLTTFPDISIG--QPKYAKDI---NCNSK-NLFHVKEF-------PLE-------- 64 (588)
T ss_dssp CCCSSSSCCEEEC--TT----SCEEEECSSSEEEE--EECCCSCC---SSBGG-GTEEEEEE-------CCC--------
T ss_pred hHhhccEEEEEEC--CC----CCEEEEEcCCceee--ccccccee---cCCCc-cEEEEEEC-------CCC--------
Confidence 3456789999999 99 99999988 79999 87666654 56666 79999999 663
Q ss_pred EECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEE
Q 001391 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1088)
Q Consensus 93 ~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~ 172 (1088)
.++.+.+|+.+. .....+ +|.+.|.+++|+| +|++||+++.||.|++||..+ ++..
T Consensus 65 --~~~~~~~~~~~~----------------~~~~~~-~~~~~V~~vawSP---dG~~LAs~s~dg~V~iwd~~~--~l~~ 120 (588)
T 2j04_A 65 --FENKLDFELAQQ----------------NGLLNS-QPVCYPRVCKPSP---IDDWMAVLSNNGNVSVFKDNK--MLTN 120 (588)
T ss_dssp --CCCTTTTSCCCS----------------SCSSTT-SCSCCEEEEEECS---SSSCEEEEETTSCEEEEETTE--EEEE
T ss_pred --CcceEEEEeCCC----------------ceEeec-CCCCcEEEEEECC---CCCEEEEEeCCCcEEEEeCCc--eeee
Confidence 244444444321 112222 4588999999999 999999999999999999644 5555
Q ss_pred eccCCc----eeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee
Q 001391 173 VHSPER----CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1088)
Q Consensus 173 ~~~~~~----~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 248 (1088)
+. +.. ..+.+++| +|++.+||+|+.||+|++||+.++.... ...-.
T Consensus 121 l~-~~~~~~~~sv~svaf---SPDG~~LAsgs~DGtVkIWd~~~~~l~~--------------------------~~~i~ 170 (588)
T 2j04_A 121 LD-SKGNLSSRTYHCFEW---NPIESSIVVGNEDGELQFFSIRKNSENT--------------------------PEFYF 170 (588)
T ss_dssp CC-CSSCSTTTCEEEEEE---CSSSSCEEEEETTSEEEEEECCCCTTTC--------------------------CCCEE
T ss_pred cc-CCCccccccEEEEEE---cCCCCEEEEEcCCCEEEEEECCCCcccc--------------------------cccee
Confidence 55 332 13566776 8999999999999999999998211000 00013
Q ss_pred eEEE----eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceee-eccCcceEEEEECCCEEEE
Q 001391 249 LFRL----VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL-YGHNARVWDCCLTDSFIIT 323 (1088)
Q Consensus 249 ~~~~----~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~-~~h~~~I~~v~~~~~~l~s 323 (1088)
+..+ .+|.++|.+++|+|+| +++++.|++|++||+..+.. .+... .+ .+|...|++++|++..|++
T Consensus 171 l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~-----~~~~~--tL~~~h~~~V~svaFsg~~LAS 241 (588)
T 2j04_A 171 ESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSH-----QPVSR--MIQNASRRKITDLKIVDYKVVL 241 (588)
T ss_dssp EEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSS-----CCCEE--EEECCCSSCCCCEEEETTEEEE
T ss_pred eeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcc-----cccee--eecccccCcEEEEEEECCEEEE
Confidence 5565 6788999999999999 88999999999999988643 11122 45 4788999999999889999
Q ss_pred EeCCCcEEEEcCCCceeEEEc-ccCCCCeEEEEE--cCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccC-CCcc
Q 001391 324 AGEDCTCRVWGSDGKQLKMIK-EHIGRGIWRCLY--DSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFN-GRTE 399 (1088)
Q Consensus 324 g~~Dg~i~vWd~~~~~~~~~~-~h~~~~V~~l~~--~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~ 399 (1088)
++ +++|++||..+.....+. +|.. .|+.++| +|++..|++++.||+ ++|..+. ++ +.......++. ....
T Consensus 242 a~-~~tIkLWd~~~~~~~~~~~gh~~-~V~~va~~~s~d~~~La~a~edG~-klw~~d~--~~-~spd~~l~a~~d~~v~ 315 (588)
T 2j04_A 242 TC-PGYVHKIDLKNYSISSLKTGSLE-NFHIIPLNHEKESTILLMSNKTSY-KVLLEDE--LH-VTADNIIAPYLEKKFK 315 (588)
T ss_dssp EC-SSEEEEEETTTTEEEEEECSCCS-CCCEEEETTCSSCEEEEECSSCEE-EEEESSS--EE-EECCCSSHHHHHHHHH
T ss_pred Ee-CCeEEEEECCCCeEEEEEcCCCc-eEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc--EE-ECCCceEEEEcCCEEE
Confidence 97 699999999666654444 7887 7999999 999999999999999 9999852 11 11111111100 0000
Q ss_pred eEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEe
Q 001391 400 IFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT 437 (1088)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t 437 (1088)
+|.. .......+.+ ...|.+++|+|+|++++..
T Consensus 316 lW~~----~g~~l~~~~~-~~~I~~va~SPdG~~lA~~ 348 (588)
T 2j04_A 316 KWST----IWNEFNNYET-TLVIHGISLSPDGYSIAIV 348 (588)
T ss_dssp HTTT----TTTSSSSSCC-EEEEEEEEECTTSSEEEEE
T ss_pred EEEC----CCCceeeecc-ceEEEEEEECCCCCEEEEE
Confidence 1100 0011112222 4569999999999888764
No 78
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.96 E-value=4.3e-27 Score=261.48 Aligned_cols=254 Identities=17% Similarity=0.169 Sum_probs=195.1
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCC--CeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA--GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t--g~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
|.++|.+++|+ |+ +++||+|+ |++|+|||+.+ ++++.++.+|.+ .|.+++|++. .+++ .+++
T Consensus 8 h~~~V~~~~~s--~~----g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~-~V~~v~~s~~-----~~g~---~l~s 72 (297)
T 2pm7_B 8 HNEMIHDAVMD--YY----GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEG-PVWRVDWAHP-----KFGT---ILAS 72 (297)
T ss_dssp CSSCEEEEEEC--TT----SSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSS-CEEEEEECCG-----GGCS---EEEE
T ss_pred CcCceEEEEEC--CC----CCEEEEEeCCCEEEEEecCCCCcEEEEEEccccC-CeEEEEecCC-----CcCC---EEEE
Confidence 56899999999 99 89999988 79999999974 467888998777 7999999832 2342 4445
Q ss_pred EECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC--CCEEEEEEcCCcEEEEEcCCCce-
Q 001391 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG--NRSLAIGCSDNSIRVWDISNSSI- 169 (1088)
Q Consensus 93 ~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d--~~~lasgs~Dg~V~iWd~~~~~~- 169 (1088)
++.|++|+|||++... ...+..+.+|...|.+++|+| + +.+|++|+.|++|++||+.++..
T Consensus 73 ~s~D~~v~iWd~~~~~-------------~~~~~~~~~h~~~v~~v~~~p---~~~g~~l~s~s~d~~v~~wd~~~~~~~ 136 (297)
T 2pm7_B 73 CSYDGKVMIWKEENGR-------------WSQIAVHAVHSASVNSVQWAP---HEYGPMLLVASSDGKVSVVEFKENGTT 136 (297)
T ss_dssp EETTTEEEEEEBSSSC-------------BCCCEEECCCSSCEEEEEECC---GGGCSEEEEEETTSEEEEEEBCSSSCB
T ss_pred EcCCCEEEEEEcCCCc-------------eEEEEEeecCCCceeEEEeCc---CCCCcEEEEEECCCcEEEEEecCCCce
Confidence 5569999999998542 345566788999999999999 6 78999999999999999987632
Q ss_pred -EEEeccCCceeEEEEeeecCC----------CCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeE
Q 001391 170 -ILEVHSPERCLLYSMKLWGDN----------LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (1088)
Q Consensus 170 -~~~~~~~~~~~~~s~~~~~~s----------~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 238 (1088)
...+..+. ..+.++++.+.. +++.+|++|+.|+.|++||+.+.+
T Consensus 137 ~~~~~~~h~-~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~------------------------ 191 (297)
T 2pm7_B 137 SPIIIDAHA-IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA------------------------ 191 (297)
T ss_dssp CCEEEECCS-SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTT------------------------
T ss_pred eeeeeeccc-CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC------------------------
Confidence 23333333 345666663321 135799999999999999997110
Q ss_pred ecccccceeeeEEEeCCCCCEEEEEEcCCC---CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEE
Q 001391 239 LQDQQHTAVNLFRLVGHEGSIFRIEWSSCG---SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC 315 (1088)
Q Consensus 239 ~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g---~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~ 315 (1088)
........+.+|.+.|.+++|+|++ .+|++++.|++|++||+..... ..........+|...|++++
T Consensus 192 -----~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~-----~~~~~~~~~~~~~~~v~~~~ 261 (297)
T 2pm7_B 192 -----QTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG-----PWKKTLLKEEKFPDVLWRAS 261 (297)
T ss_dssp -----TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS-----CCEEEESSSSCCSSCEEEEE
T ss_pred -----ceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC-----ccceeeeecccCCCcEEEEE
Confidence 0123566788999999999999985 7999999999999999987421 01111012257888999999
Q ss_pred EC--CCEEEEEeCCCcEEEEcC
Q 001391 316 LT--DSFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 316 ~~--~~~l~sg~~Dg~i~vWd~ 335 (1088)
|+ +.+|++++.|++|++|+.
T Consensus 262 ~s~~g~~las~~~D~~v~lw~~ 283 (297)
T 2pm7_B 262 WSLSGNVLALSGGDNKVTLWKE 283 (297)
T ss_dssp ECSSSCCEEEEETTSCEEEEEE
T ss_pred ECCCCCEEEEEcCCCcEEEEEE
Confidence 98 689999999999999997
No 79
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.96 E-value=1.2e-26 Score=268.76 Aligned_cols=312 Identities=10% Similarity=0.090 Sum_probs=233.4
Q ss_pred EEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEE
Q 001391 58 RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFD 137 (1088)
Q Consensus 58 ~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~ 137 (1088)
..+.+|.+ .|.+++|+ |+ .+++++.|+.|+||++..... ....+.+..+.+|...|.+
T Consensus 10 ~~~~~h~~-~i~~~~~~-------~~-----~l~s~~~dg~i~iw~~~~~~~---------~~~~~~~~~~~~h~~~v~~ 67 (397)
T 1sq9_A 10 NAGKAHDA-DIFSVSAC-------NS-----FTVSCSGDGYLKVWDNKLLDN---------ENPKDKSYSHFVHKSGLHH 67 (397)
T ss_dssp EESSCSSS-CEEEEEEC-------SS-----EEEEEETTSEEEEEESBCCTT---------CCGGGGEEEEECCTTCEEE
T ss_pred hhhhhhhc-CeEEEEec-------CC-----eEEEEcCCCEEEEEECCCccc---------ccCCCcceEEecCCCcEEE
Confidence 34455555 79999999 52 777778899999999985431 0113467788899999999
Q ss_pred EEEecccCC----C---CEEEEEEcCCcEEEEEcCCCce-----EEEeccCC----ceeEEEEeeecCC-CCCcE-EEEE
Q 001391 138 VCFLKVCNG----N---RSLAIGCSDNSIRVWDISNSSI-----ILEVHSPE----RCLLYSMKLWGDN-LEALR-IASG 199 (1088)
Q Consensus 138 v~f~p~~~d----~---~~lasgs~Dg~V~iWd~~~~~~-----~~~~~~~~----~~~~~s~~~~~~s-~~~~~-l~sg 199 (1088)
++|+| + + .+|++++.|+.|++||+.+++. ...+..+. ...+.++.+.... +++.. |+++
T Consensus 68 ~~~~~---~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 144 (397)
T 1sq9_A 68 VDVLQ---AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT 144 (397)
T ss_dssp EEEEE---EEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEE
T ss_pred EEEec---ccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEE
Confidence 99999 8 8 9999999999999999998886 77776663 4567777773111 67888 9999
Q ss_pred ecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeE-----EE-------eCCCCCEEEEEEcCC
Q 001391 200 TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF-----RL-------VGHEGSIFRIEWSSC 267 (1088)
Q Consensus 200 ~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-----~~-------~gh~~~V~~v~~sp~ 267 (1088)
+.||.|++||+.+..... ....+. .+ ..|...|.+++|+|+
T Consensus 145 ~~dg~i~iwd~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 197 (397)
T 1sq9_A 145 DVKGTTYIWKFHPFADES---------------------------NSLTLNWSPTLELQGTVESPMTPSQFATSVDISER 197 (397)
T ss_dssp ETTSCEEEEEEESSSSHH---------------------------HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT
T ss_pred eCCCcEEEEeCCcccccc---------------------------ccceeeccCcceeeeeeccccCCCCCceEEEECCC
Confidence 999999999998300000 012222 44 458999999999999
Q ss_pred CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeec---c---CcceEEEEEC--CCEEEEEeCC---CcEEEEcC-
Q 001391 268 GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG---H---NARVWDCCLT--DSFIITAGED---CTCRVWGS- 335 (1088)
Q Consensus 268 g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~---h---~~~I~~v~~~--~~~l~sg~~D---g~i~vWd~- 335 (1088)
+ ++++++.|+.|++||+.+. +.+. .+.. | ...|.+++|+ +.+|++++.| |.|++||+
T Consensus 198 ~-~l~~~~~dg~i~i~d~~~~--------~~~~--~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~ 266 (397)
T 1sq9_A 198 G-LIATGFNNGTVQISELSTL--------RPLY--NFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE 266 (397)
T ss_dssp S-EEEEECTTSEEEEEETTTT--------EEEE--EEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETT
T ss_pred c-eEEEEeCCCcEEEEECCCC--------ceeE--EEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 9 9999999999999999875 3333 5566 8 8999999998 6899999999 99999999
Q ss_pred CCceeEEEcc-------------cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC-CCCCccc------CCccccccC
Q 001391 336 DGKQLKMIKE-------------HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLE------SHPEAKEFN 395 (1088)
Q Consensus 336 ~~~~~~~~~~-------------h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~-~~~~~~~------~~~~~~~~~ 395 (1088)
+++.+..+.. |.. .|.+++|+|++++|++++.||.|++||+.. +.+..+. +|...
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---- 341 (397)
T 1sq9_A 267 FGERIGSLSVPTHSSQASLGEFAHSS-WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEED---- 341 (397)
T ss_dssp TCCEEEEECBC--------CCBSBSS-CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGG----
T ss_pred CCcccceeccCcccccccccccccCC-cEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhh----
Confidence 7888899988 887 799999999999999999999999999954 2222222 11000
Q ss_pred CCcceEEeeeCCCccceeeccCCCCceEEEEeccCC-----------eEEEEecCCeEEEEEec
Q 001391 396 GRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-----------TLYIATNHGYLYHTKLC 448 (1088)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~-----------~ll~~t~~g~i~~~~~~ 448 (1088)
...+.......|...|++++|+|++ .+++++.+|.|..|++.
T Consensus 342 -----------~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 342 -----------ILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp -----------CCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred -----------hhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 0000011112346789999999996 56666788988866653
No 80
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.96 E-value=8.9e-27 Score=267.09 Aligned_cols=292 Identities=13% Similarity=0.113 Sum_probs=231.9
Q ss_pred cCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc--eEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEE
Q 001391 129 PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS--IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEII 206 (1088)
Q Consensus 129 ~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~--~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~ 206 (1088)
..|.+.|.+++|+| ++++|++|+.|+.|++||+.+++ .+..+..+.. .+.++++ ++++.+|++++.||.|+
T Consensus 5 ~~~~~~i~~~~~s~---~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~-~v~~~~~---~~~~~~l~~~~~dg~i~ 77 (372)
T 1k8k_C 5 SFLVEPISCHAWNK---DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG-QVTGVDW---APDSNRIVTCGTDRNAY 77 (372)
T ss_dssp ESCSSCCCEEEECT---TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSS-CEEEEEE---ETTTTEEEEEETTSCEE
T ss_pred cccCCCeEEEEECC---CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCC-cccEEEE---eCCCCEEEEEcCCCeEE
Confidence 45889999999999 99999999999999999999987 6777765544 4666766 46889999999999999
Q ss_pred EEEeccCccccCCCCCCCccCCCCCCCCceeEeccccccee--eeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 001391 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV--NLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (1088)
Q Consensus 207 vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~--~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd 284 (1088)
+||+. ... ....+.+|...|.+++|+|+++++++++.|+.|++||
T Consensus 78 vwd~~---------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d 124 (372)
T 1k8k_C 78 VWTLK---------------------------------GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 124 (372)
T ss_dssp EEEEE---------------------------------TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEE
T ss_pred EEECC---------------------------------CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEE
Confidence 99998 333 3334468999999999999999999999999999999
Q ss_pred cCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-------------------CCceeEEE
Q 001391 285 VRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-------------------DGKQLKMI 343 (1088)
Q Consensus 285 ~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-------------------~~~~~~~~ 343 (1088)
+..... ..... ....+|...|.+++|+ +.+|++++.||.|++||+ .++.+..+
T Consensus 125 ~~~~~~-----~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (372)
T 1k8k_C 125 FEQEND-----WWVCK-HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES 198 (372)
T ss_dssp EETTTT-----EEEEE-EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC
T ss_pred ecCCCc-----ceeee-eeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec
Confidence 988642 12222 2446789999999998 579999999999999995 46788888
Q ss_pred cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceE
Q 001391 344 KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVR 423 (1088)
Q Consensus 344 ~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 423 (1088)
..|.. .|.+++|+|++++|++++.||.|++||+.... .+..+..+...|.
T Consensus 199 ~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----------------------------~~~~~~~~~~~v~ 248 (372)
T 1k8k_C 199 SSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADADKKM-----------------------------AVATLASETLPLL 248 (372)
T ss_dssp CCCSS-CEEEEEECSSSSEEEEEETTTEEEEEEGGGTT-----------------------------EEEEEECSSCCEE
T ss_pred CCCCC-eEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----------------------------eeEEEccCCCCeE
Confidence 88888 79999999999999999999999999995321 1122234456799
Q ss_pred EEEeccCCeEEEEecCCeEEEEEeccCCcceeE--------------------------------------EeeeecCCc
Q 001391 424 CLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWN--------------------------------------KILQVSEGM 465 (1088)
Q Consensus 424 ~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~ 465 (1088)
+++|+|++.+++++.++.+..|++.... ..|. ......+..
T Consensus 249 ~~~~~~~~~~l~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 327 (372)
T 1k8k_C 249 AVTFITESSLVAAGHDCFPVLFTYDSAA-GKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKN 327 (372)
T ss_dssp EEEEEETTEEEEEETTSSCEEEEEETTT-TEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSS
T ss_pred EEEEecCCCEEEEEeCCeEEEEEccCcC-ceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccC
Confidence 9999999999999999999987776510 1111 111113356
Q ss_pred ceEEEecCCCCCCCcCCCC---CeEEEecCCCCEEEEEEcCC
Q 001391 466 PIICMDLLSNEPKYPCGID---DWVALGDGKGNMTIVRVVGD 504 (1088)
Q Consensus 466 ~i~~l~~~~~~~~~s~~~~---~~la~g~~dg~I~iw~~~~~ 504 (1088)
+|.++++.+ +++ .++++|+.||.|++|++.+.
T Consensus 328 ~v~~~~~~~-------~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 328 SVSQISVLS-------GGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp CEEEEEEEE-------STTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred CcceeEEec-------CCCcceeeEEEecCCCceEEEEecCh
Confidence 788887643 233 79999999999999999764
No 81
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=6.2e-28 Score=283.86 Aligned_cols=286 Identities=14% Similarity=0.187 Sum_probs=206.4
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEE--EeeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRP--FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~--~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
|...|+||+|+ |. ...+||+|+ ||+|+|||+.+++.... +.+|.+ .|.+++|+|. +++ .+++
T Consensus 118 ~~~~V~~l~~~--P~---~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~-~V~~l~f~p~------~~~---~l~s 182 (435)
T 4e54_B 118 FDRRATSLAWH--PT---HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGG-SITGLKFNPL------NTN---QFYA 182 (435)
T ss_dssp CSSCEEEEEEC--SS---CTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSC-CCCEEEECSS------CTT---EEEE
T ss_pred CCCCEEEEEEe--CC---CCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCC-CEEEEEEeCC------CCC---EEEE
Confidence 45679999999 95 257899988 79999999988765443 445555 7999999942 441 4444
Q ss_pred EECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEE
Q 001391 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1088)
Q Consensus 93 ~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~ 172 (1088)
++.|++|+|||++... .........+..++.+++|+| ++.+|++|+.||.|++||+.. +.+..
T Consensus 183 ~s~D~~v~iwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~---~~~~l~~g~~dg~i~~wd~~~-~~~~~ 245 (435)
T 4e54_B 183 SSMEGTTRLQDFKGNI-------------LRVFASSDTINIWFCSLDVSA---SSRMVVTGDNVGNVILLNMDG-KELWN 245 (435)
T ss_dssp ECSSSCEEEEETTSCE-------------EEEEECCSSCSCCCCCEEEET---TTTEEEEECSSSBEEEEESSS-CBCCC
T ss_pred EeCCCEEEEeeccCCc-------------eeEEeccCCCCccEEEEEECC---CCCEEEEEeCCCcEeeeccCc-ceeEE
Confidence 4559999999987432 233334445566889999999 999999999999999999864 44555
Q ss_pred eccCCceeEEEEeeecCCCCC-cEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEE
Q 001391 173 VHSPERCLLYSMKLWGDNLEA-LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (1088)
Q Consensus 173 ~~~~~~~~~~s~~~~~~s~~~-~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1088)
+..+.. .+.++++ +|++ .++++|+.|+.|++||+++.+. ...+..
T Consensus 246 ~~~h~~-~v~~v~~---~p~~~~~~~s~s~d~~v~iwd~~~~~~------------------------------~~~~~~ 291 (435)
T 4e54_B 246 LRMHKK-KVTHVAL---NPCCDWFLATASVDQTVKIWDLRQVRG------------------------------KASFLY 291 (435)
T ss_dssp SBCCSS-CEEEEEE---CTTCSSEEEEEETTSBCCEEETTTCCS------------------------------SSCCSB
T ss_pred Eecccc-eEEeeee---cCCCceEEEEecCcceeeEEecccccc------------------------------cceEEE
Confidence 555543 4667776 4454 4888999999999999982211 112223
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCc------ceEEEEEC--CCEEEE
Q 001391 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA------RVWDCCLT--DSFIIT 323 (1088)
Q Consensus 252 ~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~------~I~~v~~~--~~~l~s 323 (1088)
..+|...|.+++|+|++++|++++.|+.|++||+.++.. .. .+.+|.. .+..+.|+ +..+++
T Consensus 292 ~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (435)
T 4e54_B 292 SLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDC-----PL-----GLIPHPHRHFQHLTPIKAAWHPRYNLIVV 361 (435)
T ss_dssp CCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSS-----EE-----EECCCCCCCCSSSCCCBCEECSSSSCEEE
T ss_pred eeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCcc-----ce-----EEecccccccccceeEEEEEcCCCCEEEE
Confidence 457999999999999999999999999999999988643 11 2222211 12223333 233333
Q ss_pred E------------eCCCcEEEEcC-CCceeEEEcc-cCCCCeEEE-EEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 324 A------------GEDCTCRVWGS-DGKQLKMIKE-HIGRGIWRC-LYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 324 g------------~~Dg~i~vWd~-~~~~~~~~~~-h~~~~V~~l-~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+ ..++.|++||. +++.+..+.. |.. .|.++ +|+|+|.+|++|+ |+.|+||+++.
T Consensus 362 ~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~-~v~s~~~fspdg~~lasg~-d~~i~iW~~~~ 430 (435)
T 4e54_B 362 GRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESS-GISSLNEFNPMGDTLASAM-GYHILIWSQQE 430 (435)
T ss_dssp ECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCC-CCCCEEEECTTSSCEEEEC-SSEEEECCCC-
T ss_pred EEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCC-cEEEEEEECCCCCEEEEEc-CCcEEEEECCc
Confidence 3 34568999999 7888888754 554 78887 6999999999876 88999999854
No 82
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=3.3e-28 Score=280.04 Aligned_cols=248 Identities=11% Similarity=0.052 Sum_probs=191.7
Q ss_pred CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC--ceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEE
Q 001391 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS--SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIV 207 (1088)
Q Consensus 130 ~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~--~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~v 207 (1088)
.|.+.|++++|+| ++++|++|+.|+.|++||+.++ +.+..+..+.. .+.++++ ++++.+|++++.|+.|++
T Consensus 9 ~~~~~v~~~~~s~---~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~-~v~~~~~---s~~~~~l~s~s~d~~v~v 81 (377)
T 3dwl_C 9 ILPKPSYEHAFNS---QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDK-IVTCVDW---APKSNRIVTCSQDRNAYV 81 (377)
T ss_dssp ECSSCCSCCEECS---SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSS-CEEEEEE---CTTTCCEEEEETTSSEEE
T ss_pred cCCCcEEEEEECC---CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCc-eEEEEEE---eCCCCEEEEEeCCCeEEE
Confidence 4667899999999 9999999999999999999988 56666665544 4667776 678899999999999999
Q ss_pred EEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001391 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (1088)
Q Consensus 208 wd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~ 287 (1088)
||+.+.+ .......+.+|...|.+++|+|++++|++++.|+.|++||+..
T Consensus 82 wd~~~~~------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 131 (377)
T 3dwl_C 82 YEKRPDG------------------------------TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQ 131 (377)
T ss_dssp C------------------------------------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC--
T ss_pred EEcCCCC------------------------------ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECC
Confidence 9998110 0125667788999999999999999999999999999999988
Q ss_pred CcccCCCCceeeeceeeec-cCcceEEEEEC--CCEEEEEeCCCcEEEEcCC-------------------CceeEEEcc
Q 001391 288 EYWKDSDSIEEVGSSVLYG-HNARVWDCCLT--DSFIITAGEDCTCRVWGSD-------------------GKQLKMIKE 345 (1088)
Q Consensus 288 ~~~~~~~~~~~i~~~~~~~-h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~-------------------~~~~~~~~~ 345 (1088)
.+. ..... .+.+ |...|.+++|+ +.+|++++.|++|++||+. ++++..+ .
T Consensus 132 ~~~-----~~~~~--~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 203 (377)
T 3dwl_C 132 END-----WWVSK--HLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-P 203 (377)
T ss_dssp --------CCCCE--EECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-C
T ss_pred ccc-----ceeee--EeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-c
Confidence 532 11232 5556 99999999998 5799999999999999973 3455556 7
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEE
Q 001391 346 HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCL 425 (1088)
Q Consensus 346 h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 425 (1088)
|.+ .|.+++|+|++++|++++.||.|++||+...... ...+..+..|...|.++
T Consensus 204 ~~~-~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~-------------------------~~~~~~~~~~~~~v~~~ 257 (377)
T 3dwl_C 204 SGG-WVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQP-------------------------PRALITVKLSQLPLRSL 257 (377)
T ss_dssp CSS-SEEEEEECTTSSCEEEEETTTEEC-CEECSTTSC-------------------------EEECCCEECSSSCEEEE
T ss_pred CCc-eEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCc-------------------------ceeeEeecCCCCceEEE
Confidence 877 7999999999999999999999999999643110 00022234456789999
Q ss_pred EeccCCeEEEEecCCeEEEEEec
Q 001391 426 HLTSEDTLYIATNHGYLYHTKLC 448 (1088)
Q Consensus 426 ~~s~~~~ll~~t~~g~i~~~~~~ 448 (1088)
+|+|++.+++++.++.+..|...
T Consensus 258 ~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 258 LWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp EEEETTEEEEEESSSSEEEECCC
T ss_pred EEcCCCCEEEEEcCCcEEEEEeC
Confidence 99999999999888887765443
No 83
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=1.6e-27 Score=267.44 Aligned_cols=260 Identities=17% Similarity=0.145 Sum_probs=192.0
Q ss_pred EEecCCCceeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCe--eEEEEeeeCCcceEEEEecccccccCCCc
Q 001391 8 EWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT--LIRPFQVFHGIRLHGISCNFINCTEGSVS 84 (1088)
Q Consensus 8 iWdl~~g~~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~--~~~~~~~~~~~~V~~i~~s~~~~~~~~d~ 84 (1088)
+....-..|.++|++++|+ |+ +++||+|+ |++|+|||+.+++ ++..+.+|.+ .|.+++|++. .++
T Consensus 4 ~~~~~~~~H~~~V~~v~~s--~~----g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~-~V~~v~~~~~-----~~~ 71 (316)
T 3bg1_A 4 VINTVDTSHEDMIHDAQMD--YY----GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEG-PVWQVAWAHP-----MYG 71 (316)
T ss_dssp ----------CCEEEEEEC--GG----GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSS-CEEEEEECCG-----GGS
T ss_pred eeeeecccccCeEEEeeEc--CC----CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCc-cEEEEEeCCC-----CCC
Confidence 3333334578999999999 99 89999988 7999999998875 5677888776 7999999831 134
Q ss_pred cceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC--CCEEEEEEcCCcEEEE
Q 001391 85 TRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG--NRSLAIGCSDNSIRVW 162 (1088)
Q Consensus 85 ~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d--~~~lasgs~Dg~V~iW 162 (1088)
+ .+++++.|++|+|||++... .+....+.+|...|.+++|+| + +.+|++|+.|++|++|
T Consensus 72 ~---~l~s~s~D~~v~iWd~~~~~-------------~~~~~~~~~h~~~V~~v~~~p---~~~g~~lasgs~D~~i~lw 132 (316)
T 3bg1_A 72 N---ILASCSYDRKVIIWREENGT-------------WEKSHEHAGHDSSVNSVCWAP---HDYGLILACGSSDGAISLL 132 (316)
T ss_dssp S---CEEEEETTSCEEEECCSSSC-------------CCEEEEECCCSSCCCEEEECC---TTTCSCEEEECSSSCEEEE
T ss_pred C---EEEEEECCCEEEEEECCCCc-------------ceEEEEccCCCCceEEEEECC---CCCCcEEEEEcCCCCEEEE
Confidence 2 55555669999999987532 345667889999999999999 6 7899999999999999
Q ss_pred EcCCCceE---EEeccCCceeEEEEeeecCC--------------CCCcEEEEEecCCeEEEEEeccCccccCCCCCCCc
Q 001391 163 DISNSSII---LEVHSPERCLLYSMKLWGDN--------------LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (1088)
Q Consensus 163 d~~~~~~~---~~~~~~~~~~~~s~~~~~~s--------------~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~ 225 (1088)
|+..+... ..+..+. ..+.++.+.+.. .++.+|++|+.|+.|++||+...
T Consensus 133 d~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~------------ 199 (316)
T 3bg1_A 133 TYTGEGQWEVKKINNAHT-IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED------------ 199 (316)
T ss_dssp EECSSSCEEECCBTTSSS-SCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTT------------
T ss_pred ecCCCCCcceeeeecccc-CCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCC------------
Confidence 99876322 2222222 223333332211 12468999999999999998710
Q ss_pred cCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCC----CEEEEEECCCcEEEEEcCCCcccCCCCceeeec
Q 001391 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG----SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS 301 (1088)
Q Consensus 226 s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g----~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~ 301 (1088)
.....+..+.+|.+.|.+++|+|++ .+|++++.|++|++|++.+... .....
T Consensus 200 ------------------~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~-----~~~~~- 255 (316)
T 3bg1_A 200 ------------------GQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASS-----NTWSP- 255 (316)
T ss_dssp ------------------SCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTC-----CCCBC-
T ss_pred ------------------CccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccc-----cchhh-
Confidence 0124566788999999999999986 8899999999999999976321 01111
Q ss_pred eeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC
Q 001391 302 SVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 302 ~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~ 335 (1088)
..+.+|...|++++|+ +.+|++++.|++|++|+.
T Consensus 256 ~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~ 291 (316)
T 3bg1_A 256 KLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE 291 (316)
T ss_dssp CEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred hhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence 1456788999999998 679999999999999997
No 84
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=2e-27 Score=279.55 Aligned_cols=296 Identities=13% Similarity=0.154 Sum_probs=215.9
Q ss_pred eEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCc
Q 001391 56 LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW 134 (1088)
Q Consensus 56 ~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 134 (1088)
.......|.. +|.+++|+|. ++ .+||+ +.|++|+|||+.... ......+.+|.+.
T Consensus 111 ~~~~~~~~~~-~V~~l~~~P~------~~----~~lasGs~dg~i~lWd~~~~~-------------~~~~~~~~gH~~~ 166 (435)
T 4e54_B 111 ILQKAAPFDR-RATSLAWHPT------HP----STVAVGSKGGDIMLWNFGIKD-------------KPTFIKGIGAGGS 166 (435)
T ss_dssp SCCEEEECSS-CEEEEEECSS------CT----TCEEEEETTSCEEEECSSCCS-------------CCEEECCCSSSCC
T ss_pred ecccCCCCCC-CEEEEEEeCC------CC----CEEEEEeCCCEEEEEECCCCC-------------ceeEEEccCCCCC
Confidence 3445555555 7999999942 33 45555 559999999998644 3455667899999
Q ss_pred EEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCC-ceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccC
Q 001391 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE-RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (1088)
Q Consensus 135 I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~-~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~ 213 (1088)
|++|+|+| .++.+|++|+.|++|++||++++........+. ...+.++.+ ++++.+|++|+.||.|++||+.
T Consensus 167 V~~l~f~p--~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~g~~dg~i~~wd~~-- 239 (435)
T 4e54_B 167 ITGLKFNP--LNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDV---SASSRMVVTGDNVGNVILLNMD-- 239 (435)
T ss_dssp CCEEEECS--SCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEE---ETTTTEEEEECSSSBEEEEESS--
T ss_pred EEEEEEeC--CCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEE---CCCCCEEEEEeCCCcEeeeccC--
Confidence 99999998 257899999999999999998765433332222 222334444 5789999999999999999987
Q ss_pred ccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCcccC
Q 001391 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKD 292 (1088)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~-~l~s~s~Dg~v~iWd~~~~~~~~ 292 (1088)
++.+..+.+|...|.+++|+|+++ ++++++.|++|++||+.+.+.
T Consensus 240 --------------------------------~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~-- 285 (435)
T 4e54_B 240 --------------------------------GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRG-- 285 (435)
T ss_dssp --------------------------------SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCS--
T ss_pred --------------------------------cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccc--
Confidence 234556789999999999999886 788999999999999987643
Q ss_pred CCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCC-----CeEEEEEcCCCCEEE
Q 001391 293 SDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR-----GIWRCLYDSLSSLLV 364 (1088)
Q Consensus 293 ~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~-----~V~~l~~~~dg~~l~ 364 (1088)
...+. ...+|...|++++|+ +.+|++++.||+|++||+ +++....+..|... .+....++|++.+++
T Consensus 286 ---~~~~~--~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (435)
T 4e54_B 286 ---KASFL--YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIV 360 (435)
T ss_dssp ---SSCCS--BCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEE
T ss_pred ---cceEE--EeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEE
Confidence 22222 557899999999998 689999999999999999 67777776655431 233556777777776
Q ss_pred EEe------------CCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEE-EeccCC
Q 001391 365 TAG------------FDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCL-HLTSED 431 (1088)
Q Consensus 365 tg~------------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l-~~s~~~ 431 (1088)
+++ .++.|++||.....+ + ......|...|.++ +|+|++
T Consensus 361 ~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~-----------------~-----------~~l~~~~~~~v~s~~~fspdg 412 (435)
T 4e54_B 361 VGRYPDPNFKSCTPYELRTIDVFDGNSGKM-----------------M-----------CQLYDPESSGISSLNEFNPMG 412 (435)
T ss_dssp EECCCCTTSCCSSTTCCCCEEEECSSSCCE-----------------E-----------EEECCSSCCCCCCEEEECTTS
T ss_pred EEEcCCCCeEEEEecCCCEEEEEECCCCcE-----------------E-----------EEEeCCCCCcEEEEEEECCCC
Confidence 664 235788888743110 0 11122345567776 699999
Q ss_pred eEEEEecCCeEEEEEeccCCc
Q 001391 432 TLYIATNHGYLYHTKLCDMDS 452 (1088)
Q Consensus 432 ~ll~~t~~g~i~~~~~~~~~~ 452 (1088)
.+++++.++.|. +|+...
T Consensus 413 ~~lasg~d~~i~---iW~~~~ 430 (435)
T 4e54_B 413 DTLASAMGYHIL---IWSQQE 430 (435)
T ss_dssp SCEEEECSSEEE---ECCCC-
T ss_pred CEEEEEcCCcEE---EEECCc
Confidence 999998888887 555443
No 85
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.96 E-value=1.5e-26 Score=263.51 Aligned_cols=313 Identities=12% Similarity=0.142 Sum_probs=227.8
Q ss_pred eeEEE-EeeeCCcceEEEEecccccccCCCccceeeEEEEE----CCCEEEEEEeccCCCCCCCCCCccccccceeeecc
Q 001391 55 TLIRP-FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF----GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP 129 (1088)
Q Consensus 55 ~~~~~-~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~----gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~ 129 (1088)
+.+.. +.+|.. .|.+++|+ |++. .+++++ +|+.|+||++.... ..... ..
T Consensus 8 ~~~~~~~~~h~~-~v~~~~~~-------p~~~---~l~~~~s~~~~d~~v~iw~~~~~~-------------~~~~~-~~ 62 (357)
T 3i2n_A 8 QIIAHIQKGFNY-TVFDCKWV-------PCSA---KFVTMGNFARGTGVIQLYEIQHGD-------------LKLLR-EI 62 (357)
T ss_dssp CEEEEEEEECSS-CEEEEEEC-------TTSS---EEEEEEC--CCCEEEEEEEECSSS-------------EEEEE-EE
T ss_pred HHhhhhccCCCC-ceEEEEEc-------CCCc---eEEEecCccCCCcEEEEEeCCCCc-------------cccee-ee
Confidence 34433 445444 89999999 7663 555555 38999999998543 22222 23
Q ss_pred CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc-eEEEeccCCceeEEEEeee---cCCCCCcEEEEEecCCeE
Q 001391 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-IILEVHSPERCLLYSMKLW---GDNLEALRIASGTIYNEI 205 (1088)
Q Consensus 130 ~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~-~~~~~~~~~~~~~~s~~~~---~~s~~~~~l~sg~~dg~I 205 (1088)
+|...|.+++|+|...++.+|++|+.|+.|++||+.+++ .+..+..+.. .+.++.+. ..++++.+|++++.||.|
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~s~~~~~l~~~~~d~~i 141 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKE-IINAIDGIGGLGIGEGAPEIVTGSRDGTV 141 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSS-CEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEeccc-ceEEEeeccccccCCCccEEEEEeCCCeE
Confidence 789999999999911117999999999999999999887 7777765544 35566554 347889999999999999
Q ss_pred EEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccccee-eeEEEeCCCC----CEEEEE----EcCCCCEEEEEEC
Q 001391 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV-NLFRLVGHEG----SIFRIE----WSSCGSKLVSVSD 276 (1088)
Q Consensus 206 ~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~gh~~----~V~~v~----~sp~g~~l~s~s~ 276 (1088)
++||+. ... .+..+..|.+ .|.+++ |+|+++++++++.
T Consensus 142 ~vwd~~---------------------------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 188 (357)
T 3i2n_A 142 KVWDPR---------------------------------QKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYD 188 (357)
T ss_dssp EEECTT---------------------------------SCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEET
T ss_pred EEEeCC---------------------------------CCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEcc
Confidence 999998 333 5666665554 799998 7889999999999
Q ss_pred CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC-----CEEEEEeCCCcEEEEcC-CCceeEE-----Ecc
Q 001391 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-----SFIITAGEDCTCRVWGS-DGKQLKM-----IKE 345 (1088)
Q Consensus 277 Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~-----~~l~sg~~Dg~i~vWd~-~~~~~~~-----~~~ 345 (1088)
|+.|++||+.+.+. . ....|...|.+++|++ .++++++.||.|++||+ .++.+.. +..
T Consensus 189 d~~i~i~d~~~~~~--------~---~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 257 (357)
T 3i2n_A 189 NGDIKLFDLRNMAL--------R---WETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKA 257 (357)
T ss_dssp TSEEEEEETTTTEE--------E---EEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEEC
T ss_pred CCeEEEEECccCce--------e---eecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCC
Confidence 99999999988532 2 5577889999999974 79999999999999998 4443333 347
Q ss_pred cCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEcCCCCCC-cccCCccccccCCCcceEEeeeCCCccceeeccCCCCceE
Q 001391 346 HIGRGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQAFLPG-SLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVR 423 (1088)
Q Consensus 346 h~~~~V~~l~~~~dg~-~l~tg~~Dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 423 (1088)
|.. .|++++|+|++. +|++++.||.|++||+...... .......... .......+..+..|...|+
T Consensus 258 ~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~-----------~~~~~~~~~~~~~~~~~v~ 325 (357)
T 3i2n_A 258 HKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMG-----------VAGSVSLLQNVTLSTQPIS 325 (357)
T ss_dssp CSS-CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCC-----------CCCEEEEEEEEECCSSCEE
T ss_pred CcC-CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccc-----------cccccceeeccccCCCCee
Confidence 887 799999999998 8999999999999999532111 1100000000 0011123445566788999
Q ss_pred EEEeccCCeEEE--EecCCeEEEEEecc
Q 001391 424 CLHLTSEDTLYI--ATNHGYLYHTKLCD 449 (1088)
Q Consensus 424 ~l~~s~~~~ll~--~t~~g~i~~~~~~~ 449 (1088)
+++|+|++.+++ ++.+|.+..|++..
T Consensus 326 ~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 326 SLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp EEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred EEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 999999986554 67789898776543
No 86
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.96 E-value=3.2e-26 Score=264.20 Aligned_cols=303 Identities=14% Similarity=0.098 Sum_probs=226.7
Q ss_pred cceeeeccCCCCcEEEEEEecccCCC-CEEEEEEcCCcEEEEEcCCCceEEEecc-CCceeEEEEeeecCCC-CCcEEEE
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNSSIILEVHS-PERCLLYSMKLWGDNL-EALRIAS 198 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~-~~lasgs~Dg~V~iWd~~~~~~~~~~~~-~~~~~~~s~~~~~~s~-~~~~l~s 198 (1088)
.+....+.+|.+.|.+++|+| ++ ++|++|+.|+.|++||+.+++....+.. .....+.++++ ++ ++.+|++
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~---~~~~~~~l~s 136 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHP---THPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKF---NQFNTNQLFV 136 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECS---SCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEE---ETTEEEEEEE
T ss_pred cceEEeccCCCCCEEEEEECC---CCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEe---CCCCCCEEEE
Confidence 566778899999999999999 88 8999999999999999998888777653 34455777777 45 6789999
Q ss_pred EecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe---CCCCCEEEEEEcCCCCEEEEEE
Q 001391 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV---GHEGSIFRIEWSSCGSKLVSVS 275 (1088)
Q Consensus 199 g~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~---gh~~~V~~v~~sp~g~~l~s~s 275 (1088)
++.|+.|++||+. . ..+..+. +|...|.+++|+|+++++++++
T Consensus 137 ~~~d~~i~iwd~~---------------------------------~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 182 (383)
T 3ei3_B 137 SSIRGATTLRDFS---------------------------------G-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGD 182 (383)
T ss_dssp EETTTEEEEEETT---------------------------------S-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEE
T ss_pred EeCCCEEEEEECC---------------------------------C-CceEEEeccCCCCCCeEEEEECCCCCEEEEEC
Confidence 9999999999997 2 2333343 4558899999999999999999
Q ss_pred CCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CC-EEEEEeCCCcEEEEcC-C----CceeEEEcccC
Q 001391 276 DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS-FIITAGEDCTCRVWGS-D----GKQLKMIKEHI 347 (1088)
Q Consensus 276 ~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~-~l~sg~~Dg~i~vWd~-~----~~~~~~~~~h~ 347 (1088)
.|+.|++||++. +.+. .+.+|...|.+++|+ +. +|++++.|++|++||+ . +..+..+ .|.
T Consensus 183 ~d~~i~i~d~~~---------~~~~--~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~ 250 (383)
T 3ei3_B 183 STGRLLLLGLDG---------HEIF--KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHE 250 (383)
T ss_dssp TTSEEEEEETTS---------CEEE--EEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECS
T ss_pred CCCCEEEEECCC---------CEEE--EeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCC
Confidence 999999999953 2333 778899999999999 34 8999999999999999 4 4556666 677
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCCEEEEEcCC-CCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEE
Q 001391 348 GRGIWRCLYDS-LSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCL 425 (1088)
Q Consensus 348 ~~~V~~l~~~~-dg~~l~tg~~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 425 (1088)
. .|++++|+| ++.+|++++.|+.|++||+.. .....+.++.....- ....+...-.....+..+
T Consensus 251 ~-~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~p~~~~~~~ 316 (383)
T 3ei3_B 251 K-PVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQ-------------HLTPIKATWHPMYDLIVA 316 (383)
T ss_dssp S-CEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCT-------------TSCCCCCEECSSSSEEEE
T ss_pred C-ceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccc-------------cccceEEeccCCCCceEE
Confidence 7 799999999 999999999999999999954 333444333211000 000000000112356678
Q ss_pred EeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeec-CCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcC
Q 001391 426 HLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVS-EGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVG 503 (1088)
Q Consensus 426 ~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~ 503 (1088)
+++|++++ +++.+|.+..|++.. .+....+.++ +...+.++++.+ ++.+|++|+ ||.|++|++++
T Consensus 317 ~~s~dg~~-s~s~d~~i~iwd~~~---~~~~~~l~~~~~~~~~~~~~~s~--------~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 317 GRYPDDQL-LLNDKRTIDIYDANS---GGLVHQLRDPNAAGIISLNKFSP--------TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp ECBCCTTT-CTTCCCCEEEEETTT---CCEEEEECBTTBCSCCCEEEECT--------TSSEEEEEE-TTEEEEEECC-
T ss_pred EecCCccc-ccCCCCeEEEEecCC---CceeeeecCCCCCceEEEEEEec--------CccEEEEec-CCcEEEEecCC
Confidence 88888888 777889898666543 3322334443 244555557754 448999997 99999999864
No 87
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.2e-25 Score=250.89 Aligned_cols=286 Identities=14% Similarity=0.192 Sum_probs=229.5
Q ss_pred ECCCC-eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeec
Q 001391 50 DLEAG-TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL 128 (1088)
Q Consensus 50 d~~tg-~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l 128 (1088)
|..++ +.++.+.+|.+ .|.+++| + .+. .+++++.|+.|++||+.. .+....+
T Consensus 3 d~~~~~~~~~~l~~h~~-~v~~~~~-~------~~~----~l~s~~~dg~v~vw~~~~---------------~~~~~~~ 55 (313)
T 3odt_A 3 DPFTGYQLSATLKGHDQ-DVRDVVA-V------DDS----KVASVSRDGTVRLWSKDD---------------QWLGTVV 55 (313)
T ss_dssp --CCCCEEEEEECCCSS-CEEEEEE-E------ETT----EEEEEETTSEEEEEEESS---------------SEEEEEE
T ss_pred CccccHHHHHHhhCCCC-CcEEEEe-c------CCC----EEEEEEcCCcEEEEECCC---------------CEEEEEe
Confidence 44444 67788888776 7999999 3 332 566666799999999974 3566777
Q ss_pred cCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC---ceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeE
Q 001391 129 PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS---SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEI 205 (1088)
Q Consensus 129 ~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~---~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I 205 (1088)
..|...|.+++|+| ++++|++|+.|+.|++|++... +.+..+..+.. .+.++.+ ++..+++++.||.|
T Consensus 56 ~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-----~~~~l~~~~~d~~i 126 (313)
T 3odt_A 56 YTGQGFLNSVCYDS---EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQG-NVCSLSF-----QDGVVISGSWDKTA 126 (313)
T ss_dssp EECSSCEEEEEEET---TTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSS-CEEEEEE-----ETTEEEEEETTSEE
T ss_pred ecCCccEEEEEECC---CCCEEEEecCCCeEEEEEeeecCCCCcccchhhccc-CEEEEEe-----cCCEEEEEeCCCCE
Confidence 88999999999999 9999999999999999998764 44555554443 4556665 46799999999999
Q ss_pred EEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcC-CCCEEEEEECCCcEEEEE
Q 001391 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWE 284 (1088)
Q Consensus 206 ~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp-~g~~l~s~s~Dg~v~iWd 284 (1088)
++||. ......+..|...|.++.|.| ++.++++++.|+.|++||
T Consensus 127 ~~~d~-----------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d 171 (313)
T 3odt_A 127 KVWKE-----------------------------------GSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ 171 (313)
T ss_dssp EEEET-----------------------------------TEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred EEEcC-----------------------------------CcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe
Confidence 99993 345667889999999999988 999999999999999999
Q ss_pred cCCCcccCCCCceeeeceeeec-cCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC
Q 001391 285 VRAEYWKDSDSIEEVGSSVLYG-HNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS 361 (1088)
Q Consensus 285 ~~~~~~~~~~~~~~i~~~~~~~-h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~ 361 (1088)
... ... .+.. |...|.+++|+ +..+++++.||.|++||+ +++.+..+..|.+ +|.+++|+|++
T Consensus 172 ~~~----------~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~- 237 (313)
T 3odt_A 172 NDK----------VIK--TFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHES-FVYCIKLLPNG- 237 (313)
T ss_dssp TTE----------EEE--EECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECTTS-
T ss_pred cCc----------eEE--EEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCc-eEEEEEEecCC-
Confidence 433 222 4445 88999999998 556999999999999999 7889999999988 79999999999
Q ss_pred EEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCe
Q 001391 362 LLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGY 441 (1088)
Q Consensus 362 ~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~ 441 (1088)
.|++++.||.|++||+.... ....+..+...|.+++|+|++.+++++.+|.
T Consensus 238 ~l~~~~~dg~v~iwd~~~~~-----------------------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~ 288 (313)
T 3odt_A 238 DIVSCGEDRTVRIWSKENGS-----------------------------LKQVITLPAISIWSVDCMSNGDIIVGSSDNL 288 (313)
T ss_dssp CEEEEETTSEEEEECTTTCC-----------------------------EEEEEECSSSCEEEEEECTTSCEEEEETTSC
T ss_pred CEEEEecCCEEEEEECCCCc-----------------------------eeEEEeccCceEEEEEEccCCCEEEEeCCCc
Confidence 58999999999999985321 1112233456799999999999999999999
Q ss_pred EEEEEecc
Q 001391 442 LYHTKLCD 449 (1088)
Q Consensus 442 i~~~~~~~ 449 (1088)
+..|++..
T Consensus 289 i~iw~~~~ 296 (313)
T 3odt_A 289 VRIFSQEK 296 (313)
T ss_dssp EEEEESCG
T ss_pred EEEEeCCC
Confidence 99766544
No 88
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.3e-25 Score=253.21 Aligned_cols=298 Identities=13% Similarity=0.166 Sum_probs=234.5
Q ss_pred eEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcE
Q 001391 56 LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWV 135 (1088)
Q Consensus 56 ~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I 135 (1088)
....+.+|.+ .|.+++|+ |+++ .+++++.|+.|++||+.. .+.+..+.+|...|
T Consensus 24 ~~~~l~~h~~-~v~~~~~s-------~~~~---~l~~~~~dg~i~vwd~~~---------------~~~~~~~~~h~~~v 77 (369)
T 3zwl_B 24 KAIKLTGHER-PLTQVKYN-------KEGD---LLFSCSKDSSASVWYSLN---------------GERLGTLDGHTGTI 77 (369)
T ss_dssp EEEEEECCSS-CEEEEEEC-------TTSC---EEEEEESSSCEEEEETTT---------------CCEEEEECCCSSCE
T ss_pred ccEEEEEeec-eEEEEEEc-------CCCC---EEEEEeCCCEEEEEeCCC---------------chhhhhhhhcCCcE
Confidence 3455777666 79999999 7772 444455699999999874 45778888999999
Q ss_pred EEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecC-----CeEEEEEe
Q 001391 136 FDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY-----NEIIVWKV 210 (1088)
Q Consensus 136 ~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d-----g~I~vwd~ 210 (1088)
.+++|+| ++++|++++.|+.|++||+.+++.+..+... ..+.++.+ ++++..+++++.+ |.|.+||+
T Consensus 78 ~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~---~~~~~~l~~~~~~~~~~~g~i~~~d~ 149 (369)
T 3zwl_B 78 WSIDVDC---FTKYCVTGSADYSIKLWDVSNGQCVATWKSP--VPVKRVEF---SPCGNYFLAILDNVMKNPGSINIYEI 149 (369)
T ss_dssp EEEEECT---TSSEEEEEETTTEEEEEETTTCCEEEEEECS--SCEEEEEE---CTTSSEEEEEECCBTTBCCEEEEEEE
T ss_pred EEEEEcC---CCCEEEEEeCCCeEEEEECCCCcEEEEeecC--CCeEEEEE---ccCCCEEEEecCCccCCCCEEEEEEe
Confidence 9999999 9999999999999999999999988887733 34566666 6789999999998 99999999
Q ss_pred ccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCC--CEEEEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001391 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG--SIFRIEWSSCGSKLVSVSDDRSARIWEVRAE 288 (1088)
Q Consensus 211 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~--~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~ 288 (1088)
......... .. .....+..+..|.+ .+.+++|+|+++++++++.|+.|++||+.+.
T Consensus 150 ~~~~~~~~~------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 207 (369)
T 3zwl_B 150 ERDSATHEL------------------TK----VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN 207 (369)
T ss_dssp EECTTTCCE------------------EE----ECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT
T ss_pred cCCccceee------------------cc----cccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence 833221100 00 02235566777877 9999999999999999999999999999873
Q ss_pred cccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEE
Q 001391 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVT 365 (1088)
Q Consensus 289 ~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~t 365 (1088)
. +.+. .+..|...|.+++|+ +.+|++++.|+.|++||+ +++.+..+. +.. ++.+++|+|+++++++
T Consensus 208 ~-------~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~-~~~~~~~~~~~~~l~~ 276 (369)
T 3zwl_B 208 Y-------EYVD--SIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDC-PLNTAVITPLKEFIIL 276 (369)
T ss_dssp T-------EEEE--EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSS-CEEEEEECSSSSEEEE
T ss_pred c-------EeEE--EEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCC-CceeEEecCCCceEEE
Confidence 1 3333 777899999999998 679999999999999999 677777777 444 6999999999999999
Q ss_pred EeCCC--------------CEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCC
Q 001391 366 AGFDS--------------AIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED 431 (1088)
Q Consensus 366 g~~Dg--------------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~ 431 (1088)
++.++ .+++||.... .....+..|...|++++|+|++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-----------------------------~~~~~~~~~~~~v~~~~~s~~~ 327 (369)
T 3zwl_B 277 GGGQEAKDVTTTSANEGKFEARFYHKIFE-----------------------------EEIGRVQGHFGPLNTVAISPQG 327 (369)
T ss_dssp EECCC-------------CEEEEEETTTC-----------------------------CEEEEEECCSSCEEEEEECTTS
T ss_pred eecCCCceEEEEecCCCcceeEEEecCCC-----------------------------cchhheecccCcEEEEEECCCC
Confidence 99998 5666665321 1233345567789999999998
Q ss_pred eEEE-EecCCeEEEEEecc
Q 001391 432 TLYI-ATNHGYLYHTKLCD 449 (1088)
Q Consensus 432 ~ll~-~t~~g~i~~~~~~~ 449 (1088)
.+++ ++.+|.+..|++..
T Consensus 328 ~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 328 TSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp SEEEEEETTSEEEEEEECH
T ss_pred CEEEEEcCCCeEEEEECcc
Confidence 6555 56788888776643
No 89
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.95 E-value=1.3e-26 Score=265.53 Aligned_cols=297 Identities=9% Similarity=0.057 Sum_probs=206.3
Q ss_pred CCCEEEEEEcCCCCEEEEEECCC-------cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEe---
Q 001391 256 EGSIFRIEWSSCGSKLVSVSDDR-------SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAG--- 325 (1088)
Q Consensus 256 ~~~V~~v~~sp~g~~l~s~s~Dg-------~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~--- 325 (1088)
..+|++++|+||+++|++|+.|. .|++|++..................+.+|...|.++++.+..+++|+
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~ 93 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN 93 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence 45899999999999999998654 59999997654310000112222356788899999999988888764
Q ss_pred --------CCCcEEEEcC-CC-ceeEE---Ec-----ccCCCCeEEEEEcCCCCEEEEE--eCCCCEEEEEcCCCCCCcc
Q 001391 326 --------EDCTCRVWGS-DG-KQLKM---IK-----EHIGRGIWRCLYDSLSSLLVTA--GFDSAIKVHQFQAFLPGSL 385 (1088)
Q Consensus 326 --------~Dg~i~vWd~-~~-~~~~~---~~-----~h~~~~V~~l~~~~dg~~l~tg--~~Dg~I~iwd~~~~~~~~~ 385 (1088)
.|+++|+|++ .. ..+.. .. .+.. .+..++|+|||++|+++ +.|++|++||+....
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~---- 168 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADD-YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT---- 168 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTC-CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE----
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCccc-CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc----
Confidence 5778999998 22 22222 11 1222 48899999999987654 478999999985421
Q ss_pred cCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCc
Q 001391 386 ESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGM 465 (1088)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 465 (1088)
.+..+ .+...|++++|+|++++++++.++.+..+......... ......+..
T Consensus 169 -------------~~~~~-------------~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~--~~~~~~~~~ 220 (365)
T 4h5i_A 169 -------------EKFEI-------------ETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIA--RKTDFDKNW 220 (365)
T ss_dssp -------------EEEEE-------------ECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEE--EECCCCTTE
T ss_pred -------------EEEEe-------------CCCCceEEEEEccCCceEEeccceeEEEEEeccCccee--eeecCCCCC
Confidence 11111 13456999999999999998888887765443332211 122233456
Q ss_pred ceEEEecCCCCCCCcCCCCCeEEEecCCC----CEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEE
Q 001391 466 PIICMDLLSNEPKYPCGIDDWVALGDGKG----NMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTA 541 (1088)
Q Consensus 466 ~i~~l~~~~~~~~~s~~~~~~la~g~~dg----~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~ 541 (1088)
.+.++++.++ +..+++++.|+ .+++|++......... .. ....+...+.. ++++|+|++|++|
T Consensus 221 ~v~~v~fspd--------g~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~--~~-~~~~~~~~V~~--~~~Spdg~~lasg 287 (365)
T 4h5i_A 221 SLSKINFIAD--------DTVLIAASLKKGKGIVLTKISIKSGNTSVLR--SK-QVTNRFKGITS--MDVDMKGELAVLA 287 (365)
T ss_dssp EEEEEEEEET--------TEEEEEEEESSSCCEEEEEEEEETTEEEEEE--EE-EEESSCSCEEE--EEECTTSCEEEEE
T ss_pred CEEEEEEcCC--------CCEEEEEecCCcceeEEeecccccceeccee--ee-eecCCCCCeEe--EEECCCCCceEEE
Confidence 7888888554 48888888777 5777887654321111 11 11122222333 5799999999999
Q ss_pred CCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcc
Q 001391 542 DPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (1088)
Q Consensus 542 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~ 612 (1088)
+.|+.|+|||+... .+...+..+|...|++++|||||++||+||.|++|+||+++.+
T Consensus 288 s~D~~V~iwd~~~~--------------~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 288 SNDNSIALVKLKDL--------------SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp ETTSCEEEEETTTT--------------EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred cCCCEEEEEECCCC--------------cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999854 2334555689999999999999999999999999999999764
No 90
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.95 E-value=2e-27 Score=266.69 Aligned_cols=252 Identities=16% Similarity=0.180 Sum_probs=193.4
Q ss_pred EeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEE
Q 001391 60 FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVC 139 (1088)
Q Consensus 60 ~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~ 139 (1088)
+.+|.+ .|.+++|+ |+|+ .+++++.|++|+|||+.... ..++..+.+|.+.|++++
T Consensus 9 ~~~H~~-~V~~v~~s-------~~g~---~lasgs~D~~v~lwd~~~~~-------------~~~~~~l~gH~~~V~~v~ 64 (316)
T 3bg1_A 9 DTSHED-MIHDAQMD-------YYGT---RLATCSSDRSVKIFDVRNGG-------------QILIADLRGHEGPVWQVA 64 (316)
T ss_dssp -----C-CEEEEEEC-------GGGC---EEEEEETTTEEEEEEEETTE-------------EEEEEEEECCSSCEEEEE
T ss_pred cccccC-eEEEeeEc-------CCCC---EEEEEeCCCeEEEEEecCCC-------------cEEEEEEcCCCccEEEEE
Confidence 345555 79999999 7773 44444569999999998532 345778899999999999
Q ss_pred EecccCCCCEEEEEEcCCcEEEEEcCCCc--eEEEeccCCceeEEEEeeecCCCC--CcEEEEEecCCeEEEEEeccCcc
Q 001391 140 FLKVCNGNRSLAIGCSDNSIRVWDISNSS--IILEVHSPERCLLYSMKLWGDNLE--ALRIASGTIYNEIIVWKVDWEHV 215 (1088)
Q Consensus 140 f~p~~~d~~~lasgs~Dg~V~iWd~~~~~--~~~~~~~~~~~~~~s~~~~~~s~~--~~~l~sg~~dg~I~vwd~~~~~~ 215 (1088)
|+|. .++++|++|+.|++|++||+.+++ ....+..+.. .+.++++ +|+ +.+|++|+.|+.|++||+....
T Consensus 65 ~~~~-~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~-~V~~v~~---~p~~~g~~lasgs~D~~i~lwd~~~~~- 138 (316)
T 3bg1_A 65 WAHP-MYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDS-SVNSVCW---APHDYGLILACGSSDGAISLLTYTGEG- 138 (316)
T ss_dssp ECCG-GGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSS-CCCEEEE---CCTTTCSCEEEECSSSCEEEEEECSSS-
T ss_pred eCCC-CCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCC-ceEEEEE---CCCCCCcEEEEEcCCCCEEEEecCCCC-
Confidence 9861 137899999999999999998874 4555555543 3556666 344 7899999999999999997110
Q ss_pred ccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCC-----------------CCEEEEEECCC
Q 001391 216 APLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC-----------------GSKLVSVSDDR 278 (1088)
Q Consensus 216 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~-----------------g~~l~s~s~Dg 278 (1088)
.......+.+|...|.+++|+|+ +++|++++.|+
T Consensus 139 -----------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~ 189 (316)
T 3bg1_A 139 -----------------------------QWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDN 189 (316)
T ss_dssp -----------------------------CEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTS
T ss_pred -----------------------------CcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCC
Confidence 01123345689999999999997 47899999999
Q ss_pred cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC------CEEEEEeCCCcEEEEcCCC----c-eeEEEcccC
Q 001391 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD------SFIITAGEDCTCRVWGSDG----K-QLKMIKEHI 347 (1088)
Q Consensus 279 ~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~------~~l~sg~~Dg~i~vWd~~~----~-~~~~~~~h~ 347 (1088)
+|++||+..... .+.+. .+.+|...|.+++|++ .+|++++.|++|++|++.. + ....+..|.
T Consensus 190 ~v~lWd~~~~~~-----~~~~~--~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~ 262 (316)
T 3bg1_A 190 LIKLWKEEEDGQ-----WKEEQ--KLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFN 262 (316)
T ss_dssp BCCEEEECTTSC-----EEEEE--CCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECS
T ss_pred eEEEEEeCCCCc-----cceee--ecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCC
Confidence 999999975321 12333 6789999999999983 5899999999999999832 1 234456677
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 348 GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 348 ~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
+ .|++++|+|++++|++++.|++|++|+..
T Consensus 263 ~-~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 263 D-VVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp S-CEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred C-cEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 7 79999999999999999999999999974
No 91
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.95 E-value=1.4e-26 Score=261.73 Aligned_cols=298 Identities=13% Similarity=0.114 Sum_probs=210.7
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCC----eeEEEEeeeCCcceEEEEecccccccCCCccceeeE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG----TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFE 90 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg----~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~ 90 (1088)
|.++|++++|+ |+ +++|++|+ |+.|+|||+.++ +.+..+..|.. .|.+++|+|. .+++ .+
T Consensus 10 H~~~v~~~~~~--~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~-----~d~~---~l 74 (351)
T 3f3f_A 10 HDDLVHDVVYD--FY----GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDS-SIVAIDWASP-----EYGR---II 74 (351)
T ss_dssp CSSCEEEEEEC--SS----SSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSS-CEEEEEECCG-----GGCS---EE
T ss_pred cccceeEEEEc--CC----CCEEEEeeCCCeEEEEECCCCCCcceecceeccCCC-cEEEEEEcCC-----CCCC---EE
Confidence 67899999999 99 88999988 799999999876 56677777666 7999999931 1452 45
Q ss_pred EEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC--CCEEEEEEcCCcEEEEEcCCCc
Q 001391 91 VALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG--NRSLAIGCSDNSIRVWDISNSS 168 (1088)
Q Consensus 91 la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d--~~~lasgs~Dg~V~iWd~~~~~ 168 (1088)
++++.|+.|++||+........ ....+.+..+.+|...|.+++|+| + +.+|++++.|+.|++||+.+++
T Consensus 75 ~s~~~dg~v~vwd~~~~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~l~~~~~dg~v~iwd~~~~~ 145 (351)
T 3f3f_A 75 ASASYDKTVKLWEEDPDQEECS------GRRWNKLCTLNDSKGSLYSVKFAP---AHLGLKLACLGNDGILRLYDALEPS 145 (351)
T ss_dssp EEEETTSCEEEEEECTTSCTTS------SCSEEEEEEECCCSSCEEEEEECC---GGGCSEEEEEETTCEEEEEECSSTT
T ss_pred EEEcCCCeEEEEecCCCccccc------ccCcceeeeecccCCceeEEEEcC---CCCCcEEEEecCCCcEEEecCCChH
Confidence 5556699999999986431110 011366788889999999999999 8 9999999999999999998876
Q ss_pred eEEEec------------cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCce
Q 001391 169 IILEVH------------SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKC 236 (1088)
Q Consensus 169 ~~~~~~------------~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~ 236 (1088)
.+..+. ......+.++.+.+...++..+++++.++.+.+|+...
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~------------------------ 201 (351)
T 3f3f_A 146 DLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD------------------------ 201 (351)
T ss_dssp CTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTT------------------------
T ss_pred HhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCC------------------------
Confidence 533221 12233456666643333488999999999998777661
Q ss_pred eEecccccceeeeEEEeCCCCCEEEEEEcCCC----CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceE
Q 001391 237 FKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG----SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312 (1088)
Q Consensus 237 ~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g----~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~ 312 (1088)
.....+..+.+|...|.+++|+|++ ++|++++.|+.|++||+..... .. ....+...+.
T Consensus 202 -------~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~-----~~~~~~~~~~ 264 (351)
T 3f3f_A 202 -------GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLS-----PL-----ASEESLTNSN 264 (351)
T ss_dssp -------SCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------
T ss_pred -------CceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcC-----cc-----ccCCccccee
Confidence 0233467788999999999999998 7999999999999999987533 00 1111111111
Q ss_pred EEEEC------CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 313 DCCLT------DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 313 ~v~~~------~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
..... ......+.....+.+|+. ..+.+..+.+|.. +|++++|+|++++|++++.||.|++|++..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 265 MFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG-EVWSVSWNLTGTILSSAGDDGKVRLWKATY 337 (351)
T ss_dssp --------------------------CCSEEEEEEEEECTTSS-CEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred ccCCCcccccccccccccccceeeeecccccccEEEEEecccc-cEEEEEEcCCCCEEEEecCCCcEEEEecCc
Confidence 11111 122233344555666766 6678888999988 799999999999999999999999999954
No 92
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.95 E-value=2.4e-26 Score=270.84 Aligned_cols=299 Identities=14% Similarity=0.201 Sum_probs=213.4
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCe-----------eEEEEeeeC-----------CcceEEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT-----------LIRPFQVFH-----------GIRLHGIS 72 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~-----------~~~~~~~~~-----------~~~V~~i~ 72 (1088)
+.++|++|+|+ |+ +.+||+|+ |+.|+|||+.+++ ++..+.+|. ...|.+++
T Consensus 27 ~~~~V~~v~~s--~~----g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~ 100 (447)
T 3dw8_B 27 EADIISTVEFN--HS----GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIR 100 (447)
T ss_dssp GGGSEEEEEEC--SS----SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEE
T ss_pred ccCcEEEEEEC--CC----CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEE
Confidence 56899999999 99 89999988 7999999999877 577888865 13799999
Q ss_pred ecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCc------------ccc------------ccceeee-
Q 001391 73 CNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPE------------TCV------------NLSLVQS- 127 (1088)
Q Consensus 73 ~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~------------~~~------------~~~~~~~- 127 (1088)
|+ |++. ...+++++.|++|++|++.........+... ... .......
T Consensus 101 ~~-------~~~~-~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
T 3dw8_B 101 WL-------PQKN-AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF 172 (447)
T ss_dssp EC-------CCCS-SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE
T ss_pred Ec-------CCCC-cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe
Confidence 99 4430 0157777779999999997522100000000 000 0011122
Q ss_pred ccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC-CceEEEe------ccCCceeEEEEeeecCCCCC-cEEEEE
Q 001391 128 LPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN-SSIILEV------HSPERCLLYSMKLWGDNLEA-LRIASG 199 (1088)
Q Consensus 128 l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~-~~~~~~~------~~~~~~~~~s~~~~~~s~~~-~~l~sg 199 (1088)
..+|...|.+++|+| ++++|++| .|+.|++||+.+ ++.+..+ .......+.++++ +|++ .+|++|
T Consensus 173 ~~~h~~~v~~~~~~~---~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~p~~~~~l~s~ 245 (447)
T 3dw8_B 173 ANAHTYHINSISINS---DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEF---HPNSCNTFVYS 245 (447)
T ss_dssp CSCCSSCCCEEEECT---TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEE---CSSCTTEEEEE
T ss_pred ccCCCcceEEEEEcC---CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEE---CCCCCcEEEEE
Confidence 468999999999999 99999998 799999999984 3344322 1122345677776 5777 899999
Q ss_pred ecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCC------------CEEEEEEcCC
Q 001391 200 TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG------------SIFRIEWSSC 267 (1088)
Q Consensus 200 ~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~------------~V~~v~~sp~ 267 (1088)
+.||.|++||+++.+.. ...+..+.+|.. .|.+++|+|+
T Consensus 246 ~~dg~i~iwd~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 296 (447)
T 3dw8_B 246 SSKGTIRLCDMRASALC-----------------------------DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHS 296 (447)
T ss_dssp ETTSCEEEEETTTCSSS-----------------------------CTTCEEECCC-----CCHHHHHTTCEEEEEECTT
T ss_pred eCCCeEEEEECcCCccc-----------------------------cceeeEeccCCCccccccccccCceEEEEEECCC
Confidence 99999999999822110 011556666665 9999999999
Q ss_pred CCEEEEEECCCcEEEEEcCC-CcccCCCCceeeeceeeeccCcc---------------eEEEEEC--CCEEEEEeCCCc
Q 001391 268 GSKLVSVSDDRSARIWEVRA-EYWKDSDSIEEVGSSVLYGHNAR---------------VWDCCLT--DSFIITAGEDCT 329 (1088)
Q Consensus 268 g~~l~s~s~Dg~v~iWd~~~-~~~~~~~~~~~i~~~~~~~h~~~---------------I~~v~~~--~~~l~sg~~Dg~ 329 (1088)
+++|++++. +.|++||+.. ++ .+. .+.+|... +..++|+ +.+|++|+.||.
T Consensus 297 g~~l~~~~~-~~v~iwd~~~~~~--------~~~--~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~ 365 (447)
T 3dw8_B 297 GRYMMTRDY-LSVKVWDLNMENR--------PVE--TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNF 365 (447)
T ss_dssp SSEEEEEES-SEEEEEETTCCSS--------CSC--CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTE
T ss_pred CCEEEEeeC-CeEEEEeCCCCcc--------ccc--eeeccccccccccccccccccccceEEEECCCCCEEEEeccCCE
Confidence 999999999 9999999986 32 222 55556431 3348898 679999999999
Q ss_pred EEEEcC-CCceeEEEcccC--------------------------------CCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 001391 330 CRVWGS-DGKQLKMIKEHI--------------------------------GRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 330 i~vWd~-~~~~~~~~~~h~--------------------------------~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd 376 (1088)
|++||+ +++.+ .+..|. ...|..++|+|++++|++++.++ +.+|.
T Consensus 366 v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 366 FRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp EEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred EEEEEcCCCcce-eeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence 999999 44443 333221 12588999999999999998876 77776
Q ss_pred c
Q 001391 377 F 377 (1088)
Q Consensus 377 ~ 377 (1088)
.
T Consensus 444 ~ 444 (447)
T 3dw8_B 444 D 444 (447)
T ss_dssp C
T ss_pred c
Confidence 4
No 93
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.95 E-value=1.7e-25 Score=261.85 Aligned_cols=281 Identities=16% Similarity=0.261 Sum_probs=225.3
Q ss_pred eEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCC
Q 001391 68 LHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN 147 (1088)
Q Consensus 68 V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~ 147 (1088)
+..|+|| ++ .+||++-|++|+|||..++. ...+..+.+|.+.|++|+|+| ++
T Consensus 108 ~~~l~wS-------~~-----n~lAvgld~tV~lWd~~tg~-------------~~~~~~~~~~~~~V~sv~fsp---dg 159 (420)
T 4gga_A 108 LNLVDWS-------SG-----NVLAVALDNSVYLWSASSGD-------------ILQLLQMEQPGEYISSVAWIK---EG 159 (420)
T ss_dssp CBCEEEC-------TT-----SEEEEEETTEEEEEETTTCC-------------EEEEEECCSTTCCEEEEEECT---TS
T ss_pred ceeEEEC-------CC-----CEEEEEeCCEEEEEECCCCC-------------EEEEEEecCCCCcEEEEEECC---CC
Confidence 4557777 54 57888889999999998643 333445668889999999999 99
Q ss_pred CEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccC
Q 001391 148 RSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHA 227 (1088)
Q Consensus 148 ~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~ 227 (1088)
++||+|+.|++|++||+.+++.+..+..+... +.++. .++..+++|+.|+.+++||...
T Consensus 160 ~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~-v~~~s-----~~~~~l~sgs~d~~i~~~d~~~--------------- 218 (420)
T 4gga_A 160 NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR-VGSLS-----WNSYILSSGSRSGHIHHHDVRV--------------- 218 (420)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSC-EEEEE-----EETTEEEEEETTSEEEEEETTS---------------
T ss_pred CEEEEEECCCeEEEEEcCCCcEEEEEeCCCCc-eEEEe-----eCCCEEEEEeCCCceeEeeecc---------------
Confidence 99999999999999999999999988876543 34443 3578999999999999999871
Q ss_pred CCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeecc
Q 001391 228 HGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH 307 (1088)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h 307 (1088)
....+..+.+|...+..+.++|+++++++++.|+.+++|+...++.. ...+ .....|
T Consensus 219 -----------------~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~----~~~~--~~~~~~ 275 (420)
T 4gga_A 219 -----------------AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG----WVPL--QTFTQH 275 (420)
T ss_dssp -----------------SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSC----SCCS--EEECCC
T ss_pred -----------------cceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccccc----ceee--eeeccc
Confidence 34566778999999999999999999999999999999999876430 1122 267789
Q ss_pred CcceEEEEEC---CCEEEEE--eCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEe--CCCCEEEEEcCC
Q 001391 308 NARVWDCCLT---DSFIITA--GEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG--FDSAIKVHQFQA 379 (1088)
Q Consensus 308 ~~~I~~v~~~---~~~l~sg--~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~--~Dg~I~iwd~~~ 379 (1088)
...|.+++|+ +.+++++ +.|++|++||+ +++++..+..|. .+.++.|+++++.+++++ .|+.|++||+..
T Consensus 276 ~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~ 353 (420)
T 4gga_A 276 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPT 353 (420)
T ss_dssp SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCC
Confidence 9999999998 3566654 58999999999 788888887765 499999999999888765 799999999853
Q ss_pred CCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEE-EEecCCeEEEEEeccCC
Q 001391 380 FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLY-IATNHGYLYHTKLCDMD 451 (1088)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll-~~t~~g~i~~~~~~~~~ 451 (1088)
. ..+..+.+|.+.|.+++|+|++.++ .++.|+.|..|++++..
T Consensus 354 ~-----------------------------~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 354 M-----------------------------AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp C-----------------------------CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred C-----------------------------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 1 1123345677899999999998555 45678989988877643
No 94
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.95 E-value=7.3e-26 Score=263.14 Aligned_cols=261 Identities=18% Similarity=0.277 Sum_probs=213.5
Q ss_pred CCCCCceEEecCCCc--------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEE
Q 001391 1 MGKKDLSEWRLDVGQ--------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGI 71 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~--------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i 71 (1088)
+.|+.|++||+.+++ |.+.|++++|+ |+ +++|++|+ ++.|+|||+.+++.+..+..|.. .|.++
T Consensus 110 ~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s--~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~ 182 (401)
T 4aez_A 110 ALERNVYVWNADSGSVSALAETDESTYVASVKWS--HD----GSFLSVGLGNGLVDIYDVESQTKLRTMAGHQA-RVGCL 182 (401)
T ss_dssp EETTEEEEEETTTCCEEEEEECCTTCCEEEEEEC--TT----SSEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEE
T ss_pred ECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEEC--CC----CCEEEEECCCCeEEEEECcCCeEEEEecCCCC-ceEEE
Confidence 358899999999987 45789999999 99 89999988 79999999999999999998766 79999
Q ss_pred EecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEE
Q 001391 72 SCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1088)
Q Consensus 72 ~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la 151 (1088)
+|+ ++ .+++++.|+.|++||+... ......+.+|...|.+++|+| ++.+|+
T Consensus 183 ~~~-------~~-----~l~~~~~dg~i~i~d~~~~--------------~~~~~~~~~~~~~v~~~~~~~---~~~~l~ 233 (401)
T 4aez_A 183 SWN-------RH-----VLSSGSRSGAIHHHDVRIA--------------NHQIGTLQGHSSEVCGLAWRS---DGLQLA 233 (401)
T ss_dssp EEE-------TT-----EEEEEETTSEEEEEETTSS--------------SCEEEEEECCSSCEEEEEECT---TSSEEE
T ss_pred EEC-------CC-----EEEEEcCCCCEEEEecccC--------------cceeeEEcCCCCCeeEEEEcC---CCCEEE
Confidence 997 43 6777777999999999853 245677889999999999999 999999
Q ss_pred EEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCC-CcEEEEEe--cCCeEEEEEeccCccccCCCCCCCccCC
Q 001391 152 IGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE-ALRIASGT--IYNEIIVWKVDWEHVAPLLNSPEGNHAH 228 (1088)
Q Consensus 152 sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~-~~~l~sg~--~dg~I~vwd~~~~~~~~~~~~~~~~s~~ 228 (1088)
+|+.|+.|++||+.+++.+..+..+.. .+.++++ +++ ..++++|+ .|+.|++||+.
T Consensus 234 s~~~d~~v~iwd~~~~~~~~~~~~~~~-~v~~~~~---~p~~~~ll~~~~gs~d~~i~i~d~~----------------- 292 (401)
T 4aez_A 234 SGGNDNVVQIWDARSSIPKFTKTNHNA-AVKAVAW---CPWQSNLLATGGGTMDKQIHFWNAA----------------- 292 (401)
T ss_dssp EEETTSCEEEEETTCSSEEEEECCCSS-CCCEEEE---CTTSTTEEEEECCTTTCEEEEEETT-----------------
T ss_pred EEeCCCeEEEccCCCCCccEEecCCcc-eEEEEEE---CCCCCCEEEEecCCCCCEEEEEECC-----------------
Confidence 999999999999999998888765543 3556666 343 45777765 89999999998
Q ss_pred CCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEE--CCCcEEEEEcCCCcccCCCCceeeeceeeec
Q 001391 229 GSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS--DDRSARIWEVRAEYWKDSDSIEEVGSSVLYG 306 (1088)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s--~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~ 306 (1088)
++..+..+. |...|.+++|+|+++++++++ .|+.|++||+.++.. ... ..+.+
T Consensus 293 ----------------~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~------~~~--~~~~~ 347 (401)
T 4aez_A 293 ----------------TGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL------TKQ--VDIPA 347 (401)
T ss_dssp ----------------TCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE------EEE--EEEEC
T ss_pred ----------------CCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc------eeE--EEecC
Confidence 566666665 667899999999999999955 899999999988532 122 25779
Q ss_pred cCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEE
Q 001391 307 HNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMI 343 (1088)
Q Consensus 307 h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~ 343 (1088)
|...|.+++|+ +.+|++++.||.|++|++ +++.+...
T Consensus 348 h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 348 HDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp CSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 99999999998 679999999999999999 66665544
No 95
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=3.6e-26 Score=261.11 Aligned_cols=281 Identities=17% Similarity=0.240 Sum_probs=217.8
Q ss_pred eeeeeEEEEEeccCCCCC-CCCEEEEEe-CCeEEEEECCC-CeeE-EEEeeeCCcceEEEEecccccccCCCccceeeEE
Q 001391 16 YLGEISALCFVHLPSHLS-SLPFLLAGS-GSQVLLYDLEA-GTLI-RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~-~~~~laag~-d~~I~vwd~~t-g~~~-~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~l 91 (1088)
|.++|++++|+ |+ . .+++|++|+ |+.|+|||+.+ ++.+ ..+..|.. .|.+++|+ |+++ .++
T Consensus 38 h~~~v~~~~~~--~~--~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~-~v~~~~~~-------~~~~---~l~ 102 (368)
T 3mmy_A 38 PDDSIGCLSFS--PP--TLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTG-PVLDVCWS-------DDGS---KVF 102 (368)
T ss_dssp CSSCEEEEEEC--CT--TSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSS-CEEEEEEC-------TTSS---EEE
T ss_pred CCCceEEEEEc--CC--CCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccC-CEEEEEEC-------cCCC---EEE
Confidence 67899999999 87 1 037888888 79999999997 5555 66777665 79999999 7763 555
Q ss_pred EEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEE--ecccCCCCEEEEEEcCCcEEEEEcCCCce
Q 001391 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCF--LKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1088)
Q Consensus 92 a~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f--~p~~~d~~~lasgs~Dg~V~iWd~~~~~~ 169 (1088)
+++.|+.|++||+... +.. .+.+|...|.+++| +| ++.+|++++.|+.|++||+.+++.
T Consensus 103 s~~~dg~v~iwd~~~~---------------~~~-~~~~~~~~v~~~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~ 163 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSN---------------QAI-QIAQHDAPVKTIHWIKAP---NYSCVMTGSWDKTLKFWDTRSSNP 163 (368)
T ss_dssp EEETTSEEEEEETTTT---------------EEE-EEEECSSCEEEEEEEECS---SCEEEEEEETTSEEEEECSSCSSC
T ss_pred EEcCCCcEEEEEcCCC---------------Cce-eeccccCceEEEEEEeCC---CCCEEEEccCCCcEEEEECCCCcE
Confidence 5566999999999853 222 35679999999999 77 889999999999999999999998
Q ss_pred EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeee
Q 001391 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (1088)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 249 (1088)
+..+..+... .++.+ ....+++++.++.+++|++... ....
T Consensus 164 ~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~i~~~~~~~~--------------------------------~~~~ 204 (368)
T 3mmy_A 164 MMVLQLPERC--YCADV-----IYPMAVVATAERGLIVYQLENQ--------------------------------PSEF 204 (368)
T ss_dssp SEEEECSSCE--EEEEE-----ETTEEEEEEGGGCEEEEECSSS--------------------------------CEEE
T ss_pred EEEEecCCCc--eEEEe-----cCCeeEEEeCCCcEEEEEeccc--------------------------------cchh
Confidence 8888776643 33332 2457888999999999999811 1111
Q ss_pred EE-EeCCCCCEEEEEEcCCCCE----EEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCc------------ceE
Q 001391 250 FR-LVGHEGSIFRIEWSSCGSK----LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA------------RVW 312 (1088)
Q Consensus 250 ~~-~~gh~~~V~~v~~sp~g~~----l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~------------~I~ 312 (1088)
.. ...+...+.++.+.++... +++++.|+.|++|++..... ...+ ..+.+|.. .|.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~v~ 277 (368)
T 3mmy_A 205 RRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP-----AKDN--FTFKCHRSNGTNTSAPQDIYAVN 277 (368)
T ss_dssp EECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH-----HHHS--EEEECSEEC----CCCEEECCEE
T ss_pred hhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc-----cccc--eeeeeeecccccccccccccceE
Confidence 11 1234455666666555443 99999999999999987532 1222 25556655 799
Q ss_pred EEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 313 DCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 313 ~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
+++|+ +.+|++++.||.|++||+ +++++..+..|.. +|++++|+|++++|++++.|+..+.|++
T Consensus 278 ~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 278 GIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQ-PISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp EEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS-CEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred EEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCC-CceEEEECCCCCeEEEEecccccccccc
Confidence 99998 579999999999999999 7888999999988 7999999999999999999986666554
No 96
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.95 E-value=9e-26 Score=255.56 Aligned_cols=279 Identities=14% Similarity=0.112 Sum_probs=218.8
Q ss_pred ceeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCe---eEEEEeeeCCcceEEEEecccccccCCCccceee-
Q 001391 15 QYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT---LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF- 89 (1088)
Q Consensus 15 ~~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~---~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~- 89 (1088)
.|.+.|++++|+ |+ +++|++|+ |+.|+|||+.+++ .+..+..|.. .|.+++|+ |++ .
T Consensus 9 ~h~~~v~~~~~s--~~----~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~-~v~~~~~~-------~~~----~~ 70 (342)
T 1yfq_A 9 APKDYISDIKII--PS----KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH-PLLCCNFI-------DNT----DL 70 (342)
T ss_dssp CCSSCEEEEEEE--GG----GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSS-CEEEEEEE-------ESS----SE
T ss_pred CCCCcEEEEEEc--CC----CCEEEEEcCCCeEEEEEeCCCCccccceeeeecCC-ceEEEEEC-------CCC----Cc
Confidence 467899999999 98 88999987 7999999998876 3444555554 79999999 666 5
Q ss_pred EEEE-ECCCEEEEEEe-ccCCCCCCCCCCccccccceeeeccC--CCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcC
Q 001391 90 EVAL-FGEKRVKLFEL-NFELSPNSQYQPETCVNLSLVQSLPR--LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS 165 (1088)
Q Consensus 90 ~la~-~gd~~v~iw~l-~~~~~~~~~~~~~~~~~~~~~~~l~~--h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~ 165 (1088)
++++ +.|+.|++|++ .... ...+.+ |...|.+++|+| +.+|++++.|+.|++||+.
T Consensus 71 ~l~~~~~dg~i~~wd~~~~~~----------------~~~~~~~~~~~~v~~l~~~~----~~~l~s~~~d~~i~iwd~~ 130 (342)
T 1yfq_A 71 QIYVGTVQGEILKVDLIGSPS----------------FQALTNNEANLGICRICKYG----DDKLIAASWDGLIEVIDPR 130 (342)
T ss_dssp EEEEEETTSCEEEECSSSSSS----------------EEECBSCCCCSCEEEEEEET----TTEEEEEETTSEEEEECHH
T ss_pred EEEEEcCCCeEEEEEeccCCc----------------eEeccccCCCCceEEEEeCC----CCEEEEEcCCCeEEEEccc
Confidence 5555 45999999999 6432 356677 999999999987 5789999999999999998
Q ss_pred C---------CceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEecc-CccccCCCCCCCccCCCCCCCCc
Q 001391 166 N---------SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW-EHVAPLLNSPEGNHAHGSSSDFK 235 (1088)
Q Consensus 166 ~---------~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~-~~~~~~~~~~~~~s~~~~~~~~~ 235 (1088)
+ ++.+..+. ....+.++.+ ++++ +++++.|+.|++||+.+ .
T Consensus 131 ~~~~~~~~~~~~~~~~~~--~~~~v~~~~~---~~~~--l~~~~~d~~i~i~d~~~~~---------------------- 181 (342)
T 1yfq_A 131 NYGDGVIAVKNLNSNNTK--VKNKIFTMDT---NSSR--LIVGMNNSQVQWFRLPLCE---------------------- 181 (342)
T ss_dssp HHTTBCEEEEESCSSSSS--SCCCEEEEEE---CSSE--EEEEESTTEEEEEESSCCT----------------------
T ss_pred ccccccccccCCeeeEEe--eCCceEEEEe---cCCc--EEEEeCCCeEEEEECCccc----------------------
Confidence 7 65555444 2344667766 3444 99999999999999981 1
Q ss_pred eeEecccccceeeeEEEeCCCCCEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCc-----
Q 001391 236 CFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA----- 309 (1088)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp-~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~----- 309 (1088)
..........|...|.+++|+| +++++++++.|+.|++|++..... ....+.. ..+.+|..
T Consensus 182 ---------~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~ 248 (342)
T 1yfq_A 182 ---------DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD--DYNSSKR--FAFRCHRLNLKDT 248 (342)
T ss_dssp ---------TCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC--STTCTTC--EEEECCCCCTTCC
T ss_pred ---------cccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCc--ccccccc--eeeeccccccccc
Confidence 1223334567899999999999 999999999999999999987510 0000112 24555544
Q ss_pred ----ceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEccc-CCCCeEEEEEcCCCCEEEEEeCCCC-EEEEE
Q 001391 310 ----RVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEH-IGRGIWRCLYDSLSSLLVTAGFDSA-IKVHQ 376 (1088)
Q Consensus 310 ----~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h-~~~~V~~l~~~~dg~~l~tg~~Dg~-I~iwd 376 (1088)
.|.+++|+ +.+|++++.||.|++||+ +++.+..+..| .. +|++++ |++++|++++.||. .+.|.
T Consensus 249 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~-~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 249 NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED-SVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp SSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSS-EEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred ccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCC-CceEec--CCCCeEEEEecCCccccccc
Confidence 99999998 678999999999999999 78889999998 76 799999 99999999999998 55444
No 97
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.95 E-value=6.3e-25 Score=245.64 Aligned_cols=280 Identities=14% Similarity=0.194 Sum_probs=217.7
Q ss_pred eEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCC
Q 001391 68 LHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN 147 (1088)
Q Consensus 68 V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~ 147 (1088)
...|+|| ++ .+||++.|++|+|||+++.. ......+.+|...|.+++|+| ++
T Consensus 28 ~~~l~WS-------~~-----~~lAvg~D~tV~iWd~~tg~-------------~~~~~~~~~~~~~V~~v~~~~---~~ 79 (318)
T 4ggc_A 28 LNLVDWS-------SG-----NVLAVALDNSVYLWSASSGD-------------ILQLLQMEQPGEYISSVAWIK---EG 79 (318)
T ss_dssp CBCEEEC-------TT-----SEEEEEETTEEEEEETTTCC-------------EEEEEECCSTTCCEEEEEECT---TS
T ss_pred ceEEEEC-------CC-----CEEEEEeCCEEEEEECCCCC-------------EEEEEEecCCCCeEEEEEECC---CC
Confidence 4678998 66 47788889999999998643 223334567889999999999 99
Q ss_pred CEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccC
Q 001391 148 RSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHA 227 (1088)
Q Consensus 148 ~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~ 227 (1088)
++|++|+.|++|++||+++++.+..+..+.... .+.. .++..+++|+.++.+++|+...
T Consensus 80 ~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~-~~~~-----~~~~~l~s~~~~~~~~~~~~~~--------------- 138 (318)
T 4ggc_A 80 NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV-GSLS-----WNSYILSSGSRSGHIHHHDVRV--------------- 138 (318)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSCE-EEEE-----EETTEEEEEETTSEEEEEETTS---------------
T ss_pred CEEEEEECCCcEEEeecCCceeEEEecCccceE-EEee-----cCCCEEEEEecCCceEeeecCC---------------
Confidence 999999999999999999999998888776543 2332 4577999999999999999871
Q ss_pred CCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeecc
Q 001391 228 HGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH 307 (1088)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h 307 (1088)
....+..+.+|...+..+.++++++++++++.|+.|++||+.+++. ..... .....|
T Consensus 139 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~-~~~~~~ 195 (318)
T 4ggc_A 139 -----------------AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG-----GWVPL-QTFTQH 195 (318)
T ss_dssp -----------------SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTT-----BSCCS-EEECCC
T ss_pred -----------------CceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcc-----cccce-eeeccc
Confidence 3456677889999999999999999999999999999999988643 11111 256678
Q ss_pred CcceEEEEEC---CCE--EEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEe--CCCCEEEEEcCCC
Q 001391 308 NARVWDCCLT---DSF--IITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG--FDSAIKVHQFQAF 380 (1088)
Q Consensus 308 ~~~I~~v~~~---~~~--l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~--~Dg~I~iwd~~~~ 380 (1088)
...|.++.+. +.. +++++.+++|++|+...........+.. .+..+.++|++..+++++ .|+.|++||+...
T Consensus 196 ~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~ 274 (318)
T 4ggc_A 196 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 274 (318)
T ss_dssp CSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSS-CEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred CCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccccee-eeeeeeecccccceEEEEEcCCCEEEEEECCCC
Confidence 8889999997 233 3567788999999994443434444555 599999999999887655 7999999998532
Q ss_pred CCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEE-EecCCeEEEEEecc
Q 001391 381 LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI-ATNHGYLYHTKLCD 449 (1088)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~-~t~~g~i~~~~~~~ 449 (1088)
..+..+.+|.+.|++++|+|++.+++ ++.||.|..|++.+
T Consensus 275 -----------------------------~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 275 -----------------------------AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp -----------------------------CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred -----------------------------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 11233456778899999999986554 56788888776654
No 98
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.95 E-value=8.4e-26 Score=265.69 Aligned_cols=255 Identities=18% Similarity=0.321 Sum_probs=212.7
Q ss_pred CCCCCceEEecCCCc-------eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEE
Q 001391 1 MGKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~-------~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~ 72 (1088)
+.||+|++||+.+++ |.++|++++|. +.+|++|+ ||+|+|||+.+++.+..+..|.. .|.+++
T Consensus 150 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--------~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~l~ 220 (435)
T 1p22_A 150 LRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD--------ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCE-AVLHLR 220 (435)
T ss_dssp ESSSCEEEEESSSCCEEEEECCCSSCEEEEECC--------SSEEEEEETTSCEEEEESSSCCEEEEECCCCS-CEEEEE
T ss_pred eCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEEC--------CCEEEEEcCCCeEEEEECCCCcEEEEEcCCCC-cEEEEE
Confidence 468999999999987 67889999986 67888888 79999999999999999998766 799999
Q ss_pred ecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEE
Q 001391 73 CNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (1088)
Q Consensus 73 ~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~las 152 (1088)
|+ ++ .+++++.|+.|++||+.... .......+.+|...|.+++| ++++|++
T Consensus 221 ~~-------~~-----~l~s~s~dg~i~vwd~~~~~------------~~~~~~~~~~~~~~v~~~~~-----~~~~l~s 271 (435)
T 1p22_A 221 FN-------NG-----MMVTCSKDRSIAVWDMASPT------------DITLRRVLVGHRAAVNVVDF-----DDKYIVS 271 (435)
T ss_dssp CC-------TT-----EEEEEETTSCEEEEECSSSS------------CCEEEEEECCCSSCEEEEEE-----ETTEEEE
T ss_pred Ec-------CC-----EEEEeeCCCcEEEEeCCCCC------------CceeeeEecCCCCcEEEEEe-----CCCEEEE
Confidence 97 43 67777789999999998643 13344677899999999999 5579999
Q ss_pred EEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCC
Q 001391 153 GCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (1088)
Q Consensus 153 gs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~ 232 (1088)
|+.|+.|++||+.+++.+..+..+... +.++.+ ++.++++|+.||.|++||+.
T Consensus 272 ~~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~-----~~~~l~~g~~dg~i~iwd~~--------------------- 324 (435)
T 1p22_A 272 ASGDRTIKVWNTSTCEFVRTLNGHKRG-IACLQY-----RDRLVVSGSSDNTIRLWDIE--------------------- 324 (435)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSC-EEEEEE-----ETTEEEEEETTSCEEEEETT---------------------
T ss_pred EeCCCeEEEEECCcCcEEEEEcCCCCc-EEEEEe-----CCCEEEEEeCCCeEEEEECC---------------------
Confidence 999999999999999999888866553 445554 46799999999999999998
Q ss_pred CCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCC-CceeeeceeeeccCcce
Q 001391 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD-SIEEVGSSVLYGHNARV 311 (1088)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~-~~~~i~~~~~~~h~~~I 311 (1088)
++..+..+.+|...|.+++| ++.++++++.||.|++||+.+....... ....+. .+.+|...|
T Consensus 325 ------------~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~~h~~~v 388 (435)
T 1p22_A 325 ------------CGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR--TLVEHSGRV 388 (435)
T ss_dssp ------------TCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEE--EECCCSSCC
T ss_pred ------------CCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchhee--eccCCCCCe
Confidence 67788899999999999999 7889999999999999999765321000 011333 778999999
Q ss_pred EEEEECCCEEEEEeCCCcEEEEcCC
Q 001391 312 WDCCLTDSFIITAGEDCTCRVWGSD 336 (1088)
Q Consensus 312 ~~v~~~~~~l~sg~~Dg~i~vWd~~ 336 (1088)
.+++|.+.+|++++.||+|++||+.
T Consensus 389 ~~l~~~~~~l~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 389 FRLQFDEFQIVSSSHDDTILIWDFL 413 (435)
T ss_dssp CCEEECSSCEEECCSSSEEEEEC--
T ss_pred EEEEeCCCEEEEEeCCCEEEEEECC
Confidence 9999999999999999999999993
No 99
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.95 E-value=1e-25 Score=261.43 Aligned_cols=366 Identities=17% Similarity=0.166 Sum_probs=233.6
Q ss_pred CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCC-CccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccc
Q 001391 43 GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGS-VSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVN 121 (1088)
Q Consensus 43 d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~-d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~ 121 (1088)
++.++||++.+++....+..|.+ .|.+++|+ | +++ .+++++.|+.|++|++......... .. ....
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~-~v~~~~~s-------~~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~-~~-~~~~ 88 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGG-GINTLDIE-------PVEGR---YMLSGGSDGVIVLYDLENSSRQSYY-TC-KAVC 88 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSS-CEEEEEEC-------TTTCC---EEEEEETTSCEEEEECCCCSSSSCE-EE-CEEE
T ss_pred cCcceeeccccCcceeeeeccCC-cEEEEEEe-------cCCCC---EEEEEcCCCeEEEEECCCCcccceE-ec-cccc
Confidence 45688898888888888887666 79999999 6 662 4445556999999999864311000 00 0000
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEec
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~ 201 (1088)
........+|...|.+++|+| .++.+|++++.|+.|++||+.+++....+.... .+..+.+...++++.++++|+.
T Consensus 89 ~~~~~~~~~~~~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 164 (408)
T 4a11_B 89 SIGRDHPDVHRYSVETVQWYP--HDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEE--TVYSHHMSPVSTKHCLVAVGTR 164 (408)
T ss_dssp EECTTCTTCCSSCEEEEEECT--TCTTCEEEEETTSEEEEEETTTTEEEEEEECSS--CEEEEEECSSCSSCCEEEEEES
T ss_pred cccccccccCCCcEEEEEEcc--CCCcEEEEEeCCCeEEEeeCCCCccceeccCCC--ceeeeEeecCCCCCcEEEEEcC
Confidence 000112246999999999998 245689999999999999999998887776433 3566777666778889999999
Q ss_pred CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCC-EEEEEECCCcE
Q 001391 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSA 280 (1088)
Q Consensus 202 dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~-~l~s~s~Dg~v 280 (1088)
+|.|++||+. .+..+..+.+|.+.|.+++|+|+++ .+++++.|+.|
T Consensus 165 ~~~v~~~d~~---------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i 211 (408)
T 4a11_B 165 GPKVQLCDLK---------------------------------SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRV 211 (408)
T ss_dssp SSSEEEEESS---------------------------------SSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCE
T ss_pred CCeEEEEeCC---------------------------------CcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcE
Confidence 9999999998 6677788899999999999999998 58999999999
Q ss_pred EEEEcCCCcccC-------CCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccC---
Q 001391 281 RIWEVRAEYWKD-------SDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHI--- 347 (1088)
Q Consensus 281 ~iWd~~~~~~~~-------~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~--- 347 (1088)
++||+....... ........ ....+|...|.+++|+ +.+|++++.||.|++||+ +++....+..+.
T Consensus 212 ~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 290 (408)
T 4a11_B 212 KLWDVRRASGCLITLDQHNGKKSQAVE-SANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNN 290 (408)
T ss_dssp EEEETTCSSCCSEECCTTTTCSCCCTT-TSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCC
T ss_pred EEEECCCCCcccccccccccccceeec-cccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccccc
Confidence 999998754210 00000011 1336799999999998 579999999999999999 555444332221
Q ss_pred -CCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEE
Q 001391 348 -GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLH 426 (1088)
Q Consensus 348 -~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 426 (1088)
...+........+..+++++.|+.|++||+.... .+..+..|...|++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-----------------------------~~~~~~~~~~~v~~~~ 341 (408)
T 4a11_B 291 SKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE-----------------------------QITMLKGHYKTVDCCV 341 (408)
T ss_dssp CSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCC-----------------------------EEEEECCCSSCEEEEE
T ss_pred ccccceeEEecCCCceEEEEecCCEEEEEECcCCc-----------------------------ceeeeccCCCeEEEEE
Confidence 1112222223344567777889999999985321 1223345667899999
Q ss_pred eccCCeEE-EEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEc
Q 001391 427 LTSEDTLY-IATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVV 502 (1088)
Q Consensus 427 ~s~~~~ll-~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~ 502 (1088)
|+|++.++ +++.+|.+..|++....... ..........+ .......+...+.++.+++|+..
T Consensus 342 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~-----~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 342 FQSNFQELYSGSRDCNILAWVPSLYEPVP-----DDDETTTKSQL---------NPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp EETTTTEEEEEETTSCEEEEEECC-----------------------------------------------------
T ss_pred EcCCCCEEEEECCCCeEEEEeCCCCCccC-----CCCceEecccc---------ccccceeecccCccCceeecCCc
Confidence 99998655 45678889977765543221 11100011111 11233556677889999999764
No 100
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.1e-25 Score=252.82 Aligned_cols=256 Identities=16% Similarity=0.260 Sum_probs=203.2
Q ss_pred CeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCC
Q 001391 54 GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH 133 (1088)
Q Consensus 54 g~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 133 (1088)
|+++..+.+|.+ .|.+++|+ |+++ .+++++.|+.|+||++.... .+.+..+.+|.+
T Consensus 1 G~~~~~~~~h~~-~v~~~~~s-------~~~~---~l~~~~~dg~i~iw~~~~~~-------------~~~~~~~~~h~~ 56 (379)
T 3jrp_A 1 GSMVVIANAHNE-LIHDAVLD-------YYGK---RLATCSSDKTIKIFEVEGET-------------HKLIDTLTGHEG 56 (379)
T ss_dssp ----CCEEECCC-CEEEEEEC-------SSSS---EEEEEETTSCEEEEEEETTE-------------EEEEEEECCCSS
T ss_pred CCccEEecCCcc-cEEEEEEc-------CCCC---EEEEEECCCcEEEEecCCCc-------------ceeeeEecCCCC
Confidence 456778888777 79999999 7772 44444569999999998433 567788899999
Q ss_pred cEEEEEEecccCC--CCEEEEEEcCCcEEEEEcCCCc--eEEEeccCCceeEEEEeeecCCCC--CcEEEEEecCCeEEE
Q 001391 134 WVFDVCFLKVCNG--NRSLAIGCSDNSIRVWDISNSS--IILEVHSPERCLLYSMKLWGDNLE--ALRIASGTIYNEIIV 207 (1088)
Q Consensus 134 ~I~~v~f~p~~~d--~~~lasgs~Dg~V~iWd~~~~~--~~~~~~~~~~~~~~s~~~~~~s~~--~~~l~sg~~dg~I~v 207 (1088)
.|++++|+| + +++|++|+.|+.|++||+.+++ .+..+..+. ..+.++++ +++ +.++++++.||.|++
T Consensus 57 ~v~~~~~~~---~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~v~~~~~---~~~~~~~~l~~~~~d~~i~v 129 (379)
T 3jrp_A 57 PVWRVDWAH---PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS-ASVNSVQW---APHEYGPLLLVASSDGKVSV 129 (379)
T ss_dssp CEEEEEECC---GGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS-SCEEEEEE---CCGGGCSEEEEEETTSEEEE
T ss_pred cEEEEEeCC---CCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCC-cceEEEEe---CCCCCCCEEEEecCCCcEEE
Confidence 999999997 5 8999999999999999999987 455554443 34667776 566 889999999999999
Q ss_pred EEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcC-------------CCCEEEEE
Q 001391 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-------------CGSKLVSV 274 (1088)
Q Consensus 208 wd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp-------------~g~~l~s~ 274 (1088)
||+... .......+.+|...|.+++|+| ++.+++++
T Consensus 130 ~d~~~~-------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (379)
T 3jrp_A 130 VEFKEN-------------------------------GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 178 (379)
T ss_dssp EECCTT-------------------------------SCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEE
T ss_pred EecCCC-------------------------------CceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEE
Confidence 999821 1234456779999999999999 69999999
Q ss_pred ECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC-----CEEEEEeCCCcEEEEcC-CCc---eeEEE--
Q 001391 275 SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-----SFIITAGEDCTCRVWGS-DGK---QLKMI-- 343 (1088)
Q Consensus 275 s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~-----~~l~sg~~Dg~i~vWd~-~~~---~~~~~-- 343 (1088)
+.|+.|++||+..... ..... ..+.+|...|.+++|++ .+|++++.||.|++||+ .+. ....+
T Consensus 179 ~~dg~i~i~d~~~~~~-----~~~~~-~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 252 (379)
T 3jrp_A 179 GADNLVKIWKYNSDAQ-----TYVLE-STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKE 252 (379)
T ss_dssp ETTSCEEEEEEETTTT-----EEEEE-EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSS
T ss_pred eCCCeEEEEEecCCCc-----ceeeE-EEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeecc
Confidence 9999999999987543 11122 27788999999999983 58999999999999999 332 22222
Q ss_pred cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 344 KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 344 ~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
..|.. .|++++|+|++++|++++.||.|++|++.
T Consensus 253 ~~~~~-~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 253 EKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp SCCSS-CEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred ccCCC-cEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 23666 79999999999999999999999999984
No 101
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.2e-24 Score=249.74 Aligned_cols=254 Identities=17% Similarity=0.173 Sum_probs=200.6
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECC--CCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLE--AGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~--tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
|.++|++++|+ |+ +++|++|+ |+.|+|||+. +++.+..+..|.+ .|.+++|++. .+++ .+++
T Consensus 10 h~~~v~~~~~s--~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~-~v~~~~~~~~-----~~~~---~l~s 74 (379)
T 3jrp_A 10 HNELIHDAVLD--YY----GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG-PVWRVDWAHP-----KFGT---ILAS 74 (379)
T ss_dssp CCCCEEEEEEC--SS----SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECCG-----GGCS---EEEE
T ss_pred CcccEEEEEEc--CC----CCEEEEEECCCcEEEEecCCCcceeeeEecCCCC-cEEEEEeCCC-----CCCC---EEEE
Confidence 67899999999 99 89999987 7999999998 6677788888766 7999999832 2252 5555
Q ss_pred EECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC--CCEEEEEEcCCcEEEEEcCCCce-
Q 001391 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG--NRSLAIGCSDNSIRVWDISNSSI- 169 (1088)
Q Consensus 93 ~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d--~~~lasgs~Dg~V~iWd~~~~~~- 169 (1088)
++.|+.|++||+.... ...+..+.+|...|.+++|+| + +.+|++++.|+.|++||+.++..
T Consensus 75 ~~~dg~v~iwd~~~~~-------------~~~~~~~~~~~~~v~~~~~~~---~~~~~~l~~~~~d~~i~v~d~~~~~~~ 138 (379)
T 3jrp_A 75 CSYDGKVLIWKEENGR-------------WSQIAVHAVHSASVNSVQWAP---HEYGPLLLVASSDGKVSVVEFKENGTT 138 (379)
T ss_dssp EETTSCEEEEEEETTE-------------EEEEEEECCCSSCEEEEEECC---GGGCSEEEEEETTSEEEEEECCTTSCC
T ss_pred eccCCEEEEEEcCCCc-------------eeEeeeecCCCcceEEEEeCC---CCCCCEEEEecCCCcEEEEecCCCCce
Confidence 5669999999998642 346778889999999999999 8 89999999999999999988743
Q ss_pred -EEEeccCCceeEEEEeeecC----------CCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeE
Q 001391 170 -ILEVHSPERCLLYSMKLWGD----------NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (1088)
Q Consensus 170 -~~~~~~~~~~~~~s~~~~~~----------s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 238 (1088)
...+..+. ..+.++.+.+. .+++.++++|+.||.|++||+++..
T Consensus 139 ~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------------------ 193 (379)
T 3jrp_A 139 SPIIIDAHA-IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA------------------------ 193 (379)
T ss_dssp CEEEEECCT-TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT------------------------
T ss_pred eeEEecCCC-CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC------------------------
Confidence 33333333 34566666321 0168899999999999999997211
Q ss_pred ecccccceeeeEEEeCCCCCEEEEEEcCC---CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEE
Q 001391 239 LQDQQHTAVNLFRLVGHEGSIFRIEWSSC---GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC 315 (1088)
Q Consensus 239 ~~~~~~~~~~~~~~~gh~~~V~~v~~sp~---g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~ 315 (1088)
........+.+|...|.+++|+|+ +++|++++.|+.|++||+..... ...........|...|++++
T Consensus 194 -----~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~v~~~~ 263 (379)
T 3jrp_A 194 -----QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG-----PWKKTLLKEEKFPDVLWRAS 263 (379)
T ss_dssp -----TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS-----CCEEEESSSSCCSSCEEEEE
T ss_pred -----cceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc-----cceeeeeccccCCCcEEEEE
Confidence 123456778899999999999999 89999999999999999988532 11111113455889999999
Q ss_pred EC--CCEEEEEeCCCcEEEEcC
Q 001391 316 LT--DSFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 316 ~~--~~~l~sg~~Dg~i~vWd~ 335 (1088)
|+ +.+|++++.||.|++|++
T Consensus 264 ~s~~g~~l~~~~~dg~i~iw~~ 285 (379)
T 3jrp_A 264 WSLSGNVLALSGGDNKVTLWKE 285 (379)
T ss_dssp ECSSSCCEEEEESSSSEEEEEE
T ss_pred EcCCCCEEEEecCCCcEEEEeC
Confidence 98 679999999999999998
No 102
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.94 E-value=4.9e-25 Score=259.68 Aligned_cols=319 Identities=13% Similarity=0.164 Sum_probs=218.7
Q ss_pred CcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCC-----------
Q 001391 65 GIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS----------- 132 (1088)
Q Consensus 65 ~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~----------- 132 (1088)
...|.+++|+ |+| .+|++ +.|+.|+||++........ ......+....+.+|.
T Consensus 28 ~~~V~~v~~s-------~~g----~~la~g~~dg~v~iw~~~~~~~~~~----~~~~~~~~~~~~~~h~~~~~~~~~~~~ 92 (447)
T 3dw8_B 28 ADIISTVEFN-------HSG----ELLATGDKGGRVVIFQQEQENKIQS----HSRGEYNVYSTFQSHEPEFDYLKSLEI 92 (447)
T ss_dssp GGSEEEEEEC-------SSS----SEEEEEETTSEEEEEEECC-----C----CCCCCEEEEEEEECCCCEEEGGGTEEE
T ss_pred cCcEEEEEEC-------CCC----CEEEEEcCCCeEEEEEecCCCCCCc----ccccceeEecccccccccccccccccc
Confidence 3479999999 777 45555 5599999999985431100 0011245677888998
Q ss_pred -CcEEEEEEecccCCC--CEEEEEEcCCcEEEEEcCCCceEE--------------------------------------
Q 001391 133 -HWVFDVCFLKVCNGN--RSLAIGCSDNSIRVWDISNSSIIL-------------------------------------- 171 (1088)
Q Consensus 133 -~~I~~v~f~p~~~d~--~~lasgs~Dg~V~iWd~~~~~~~~-------------------------------------- 171 (1088)
+.|.+++|+| ++ .+|++++.|++|++||+.++....
T Consensus 93 ~~~V~~l~~~~---~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (447)
T 3dw8_B 93 EEKINKIRWLP---QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPR 169 (447)
T ss_dssp CCCCCEEEECC---CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEE
T ss_pred cCceEEEEEcC---CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccce
Confidence 8899999999 77 799999999999999997644321
Q ss_pred -EeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeE
Q 001391 172 -EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (1088)
Q Consensus 172 -~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1088)
.+.......+.++++ ++++.+|++| .|+.|++||+.. ....+.
T Consensus 170 ~~~~~~h~~~v~~~~~---~~~~~~l~s~-~d~~i~iwd~~~--------------------------------~~~~~~ 213 (447)
T 3dw8_B 170 RIFANAHTYHINSISI---NSDYETYLSA-DDLRINLWHLEI--------------------------------TDRSFN 213 (447)
T ss_dssp EEECSCCSSCCCEEEE---CTTSSEEEEE-CSSEEEEEETTE--------------------------------EEEEEE
T ss_pred EEeccCCCcceEEEEE---cCCCCEEEEe-CCCeEEEEECCC--------------------------------CCceee
Confidence 222223334556666 5789999998 799999999971 122222
Q ss_pred -------EEeCCCCCEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCc------------c
Q 001391 251 -------RLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA------------R 310 (1088)
Q Consensus 251 -------~~~gh~~~V~~v~~sp~g-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~------------~ 310 (1088)
.+.+|...|.+++|+|++ .+|++++.|+.|++||+.+++.. ...+. .+.+|.. .
T Consensus 214 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~ 287 (447)
T 3dw8_B 214 IVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC----DRHSK--LFEEPEDPSNRSFFSEIISS 287 (447)
T ss_dssp EEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS----CTTCE--EECCC-----CCHHHHHTTC
T ss_pred eeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc----cceee--EeccCCCccccccccccCce
Confidence 245899999999999998 99999999999999999886420 01122 5555654 8
Q ss_pred eEEEEEC--CCEEEEEeCCCcEEEEcC-C-CceeEEEcccCCC-----------C---eEEEEEcCCCCEEEEEeCCCCE
Q 001391 311 VWDCCLT--DSFIITAGEDCTCRVWGS-D-GKQLKMIKEHIGR-----------G---IWRCLYDSLSSLLVTAGFDSAI 372 (1088)
Q Consensus 311 I~~v~~~--~~~l~sg~~Dg~i~vWd~-~-~~~~~~~~~h~~~-----------~---V~~l~~~~dg~~l~tg~~Dg~I 372 (1088)
|.+++|+ +.+|++++. +.|++||+ . ++++..+..|..- . +..++|+|++++|++|+.||.|
T Consensus 288 v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v 366 (447)
T 3dw8_B 288 ISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFF 366 (447)
T ss_dssp EEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEE
T ss_pred EEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEE
Confidence 9999998 679999998 99999999 4 7888888887530 0 3349999999999999999999
Q ss_pred EEEEcCCCCCCcccCCccccc---cCCCcceEEeeeCCCccceee-ccCCCCceEEEEeccCCeEEEEecCCeEEEE
Q 001391 373 KVHQFQAFLPGSLESHPEAKE---FNGRTEIFSIKIPNFSEQIRL-TDSKSEYVRCLHLTSEDTLYIATNHGYLYHT 445 (1088)
Q Consensus 373 ~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~ 445 (1088)
++||+.+.....++.+..... ......+.. ........... .......|..++|+|++.+++.+..+.++.|
T Consensus 367 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~ 442 (447)
T 3dw8_B 367 RMFDRNTKRDITLEASRENNKPRTVLKPRKVCA-SGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIF 442 (447)
T ss_dssp EEEETTTCCEEEEECCSTTCCTTCBCCCCCEEC-SSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEEE
T ss_pred EEEEcCCCcceeeeecccccccccccCCccccc-cCCcccccccccccccCCceeEEEECCCCCEEEEEecceeeee
Confidence 999996644333333321110 000000000 00000000000 1122457899999999988888777777744
No 103
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=8.2e-27 Score=270.45 Aligned_cols=319 Identities=10% Similarity=0.007 Sum_probs=228.3
Q ss_pred cCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEE
Q 001391 129 PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVW 208 (1088)
Q Consensus 129 ~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vw 208 (1088)
+...++|.+++|+| ||+++||++.|++|+ |...++.+ .+| ...++++++ +|+| .++.+.+|
T Consensus 12 ~~~~~~v~sv~~Sp---DG~~iASas~D~TV~--d~~~~~~l---~gh-~~~v~~V~F---sPdg-------~~~~~~~~ 72 (588)
T 2j04_A 12 KEFEDWKNNLTWAR---DGTLYLTTFPDISIG--QPKYAKDI---NCN-SKNLFHVKE---FPLE-------FENKLDFE 72 (588)
T ss_dssp CCCSSSSCCEEECT---TSCEEEECSSSEEEE--EECCCSCC---SSB-GGGTEEEEE---ECCC-------CCCTTTTS
T ss_pred hHhhccEEEEEECC---CCCEEEEEcCCceee--ccccccee---cCC-CccEEEEEE---CCCC-------CcceEEEE
Confidence 35568999999999 999999999999999 76666544 333 345777777 4555 45555555
Q ss_pred EeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001391 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE 288 (1088)
Q Consensus 209 d~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~ 288 (1088)
+.+ .. .+..+ +|...|.+++|+|+|++|++++.||.|++||...
T Consensus 73 ~~~---------------------------------~~-~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~- 116 (588)
T 2j04_A 73 LAQ---------------------------------QN-GLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK- 116 (588)
T ss_dssp CCC---------------------------------SS-CSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-
T ss_pred eCC---------------------------------Cc-eEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-
Confidence 443 11 11111 5688999999999999999999999999999543
Q ss_pred cccCCCCceeeeceeeeccCc-----ceEEEEEC--CCEEEEEeCCCcEEEEcCC-Cc-------eeEEE----cccCCC
Q 001391 289 YWKDSDSIEEVGSSVLYGHNA-----RVWDCCLT--DSFIITAGEDCTCRVWGSD-GK-------QLKMI----KEHIGR 349 (1088)
Q Consensus 289 ~~~~~~~~~~i~~~~~~~h~~-----~I~~v~~~--~~~l~sg~~Dg~i~vWd~~-~~-------~~~~~----~~h~~~ 349 (1088)
.+. .+. |.. .|.+++|+ +++|++|+.||+|++||+. ++ .+.++ .+|..
T Consensus 117 ---------~l~--~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~- 183 (588)
T 2j04_A 117 ---------MLT--NLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKD- 183 (588)
T ss_dssp ---------EEE--ECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCC-
T ss_pred ---------eee--ecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccc-
Confidence 222 334 554 59999999 7899999999999999994 43 25676 66766
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeec-cCCCCceEEEEec
Q 001391 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLT-DSKSEYVRCLHLT 428 (1088)
Q Consensus 350 ~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~~l~~s 428 (1088)
.|.+++|+|+| +++++.|++|++|++.+....+ ....+ ..|...|.+++|+
T Consensus 184 ~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~--------------------------~~~tL~~~h~~~V~svaFs 235 (588)
T 2j04_A 184 WVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQP--------------------------VSRMIQNASRRKITDLKIV 235 (588)
T ss_dssp CEEEEEEETTE--EEEEETTCCEEEECCCSSSSCC--------------------------CEEEEECCCSSCCCCEEEE
T ss_pred cEEEEEEcCCc--EEEEeCCCeEEEEECCCCcccc--------------------------ceeeecccccCcEEEEEEE
Confidence 69999999999 8889999999999996542210 00111 2344679999999
Q ss_pred cCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCc
Q 001391 429 SEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP 508 (1088)
Q Consensus 429 ~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~ 508 (1088)
+..++++.++.+..|++ ..........+ +...+..+.+.. .+++..+++++++|. ++|..+.
T Consensus 236 --g~~LASa~~~tIkLWd~---~~~~~~~~~~g-h~~~V~~va~~~------s~d~~~La~a~edG~-klw~~d~----- 297 (588)
T 2j04_A 236 --DYKVVLTCPGYVHKIDL---KNYSISSLKTG-SLENFHIIPLNH------EKESTILLMSNKTSY-KVLLEDE----- 297 (588)
T ss_dssp --TTEEEEECSSEEEEEET---TTTEEEEEECS-CCSCCCEEEETT------CSSCEEEEECSSCEE-EEEESSS-----
T ss_pred --CCEEEEEeCCeEEEEEC---CCCeEEEEEcC-CCceEEEEEeee------CCCCCEEEEEcCCCC-EEEeecc-----
Confidence 45666666788885544 33332222224 466777777711 134478999999999 9997651
Q ss_pred ceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEe
Q 001391 509 QLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDA 588 (1088)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~ 588 (1088)
..++||+..+++. |+++++|+...... ..+ .+...|.+++|
T Consensus 298 --------------------~~~spd~~l~a~~--d~~v~lW~~~g~~l---------------~~~--~~~~~I~~va~ 338 (588)
T 2j04_A 298 --------------------LHVTADNIIAPYL--EKKFKKWSTIWNEF---------------NNY--ETTLVIHGISL 338 (588)
T ss_dssp --------------------EEEECCCSSHHHH--HHHHHHTTTTTTSS---------------SSS--CCEEEEEEEEE
T ss_pred --------------------EEECCCceEEEEc--CCEEEEEECCCCce---------------eee--ccceEEEEEEE
Confidence 2377888887765 99999998753321 011 22556999999
Q ss_pred eeCCCEEEEEcC
Q 001391 589 SFEDEVLFCGDL 600 (1088)
Q Consensus 589 spdg~~LatGs~ 600 (1088)
||||++||++++
T Consensus 339 SPdG~~lA~~~~ 350 (588)
T 2j04_A 339 SPDGYSIAIVYD 350 (588)
T ss_dssp CTTSSEEEEEEE
T ss_pred CCCCCEEEEEEe
Confidence 999999999875
No 104
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=4.1e-23 Score=269.66 Aligned_cols=442 Identities=8% Similarity=-0.008 Sum_probs=289.6
Q ss_pred CCceEEecCCCceeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCC
Q 001391 4 KDLSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSV 83 (1088)
Q Consensus 4 ~~i~iWdl~~g~~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d 83 (1088)
+++++|.+....+.+.+...+|| | +.|+....+.|++||+.+++. ..+..|.. .+.+++|| ||
T Consensus 1 ~~~kl~~~~g~~~~~~~~~~~~S--~------~~iaf~~~~~l~~~~~~gg~~-~~lt~~~~-~v~~~~~S-------PD 63 (1045)
T 1k32_A 1 KTFKLHEMHGLCMPNLLLNPDIH--G------DRIIFVCCDDLWEHDLKSGST-RKIVSNLG-VINNARFF-------PD 63 (1045)
T ss_dssp ------------CCCCCEEEEEE--T------TEEEEEETTEEEEEETTTCCE-EEEECSSS-EEEEEEEC-------TT
T ss_pred CcccccccccccccceEeCcEEe--C------CEEEEEECCcEEEEECCCCcE-EEeeeCCC-cccCeEEC-------CC
Confidence 36788876554466789999999 5 478888878999999988764 45665555 79999999 88
Q ss_pred ccceeeEEEEE-C------CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcE-------EEEEEecccCCCCE
Q 001391 84 STRVTFEVALF-G------EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWV-------FDVCFLKVCNGNRS 149 (1088)
Q Consensus 84 ~~~~~~~la~~-g------d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I-------~~v~f~p~~~d~~~ 149 (1088)
| ..|+.. . +..|.+|++... ....+..|...+ .+++|+| ||++
T Consensus 64 G----~~la~~s~~~~~~~~~~i~~~d~~~g----------------~~~~lt~~~~~~~~~~~~~~~~~~Sp---Dg~l 120 (1045)
T 1k32_A 64 G----RKIAIRVMRGSSLNTADLYFYNGENG----------------EIKRITYFSGKSTGRRMFTDVAGFDP---DGNL 120 (1045)
T ss_dssp S----SEEEEEEEESTTCCEEEEEEEETTTT----------------EEEECCCCCEEEETTEECSEEEEECT---TCCE
T ss_pred C----CEEEEEEeeccCCCCCeEEEEECCCC----------------CeEEcccCCCcccccccccccccCCC---CCEE
Confidence 8 455543 2 247888887632 245677888888 9999999 9997
Q ss_pred EEEEEcC------CcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecC------------CeEEEEEec
Q 001391 150 LAIGCSD------NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY------------NEIIVWKVD 211 (1088)
Q Consensus 150 lasgs~D------g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d------------g~I~vwd~~ 211 (1088)
+++++.+ ..|.+|++.+++.......+.. .+.+ +| + +++++..+ ....+|...
T Consensus 121 l~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~----~~~~---sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~ 191 (1045)
T 1k32_A 121 IISTDAMQPFSSMTCLYRVENDGINFVPLNLGPAT----HILF---AD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEV 191 (1045)
T ss_dssp EEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCS----EEEE---ET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEE
T ss_pred EEEECCcCCCcccceEEEEECCCCCeEEecCCCcc----eeee---CC-C-EEEEeccCCCccccccccCCCcCCEEEEC
Confidence 7887754 3577888877765333222222 2223 35 6 77776532 334555433
Q ss_pred cCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCccc
Q 001391 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK 291 (1088)
Q Consensus 212 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~ 291 (1088)
.......+.+|.+.+.++.|+++ ..+++++.|+.+++|.+.....
T Consensus 192 ---------------------------------~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~- 236 (1045)
T 1k32_A 192 ---------------------------------NSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK- 236 (1045)
T ss_dssp ---------------------------------ETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC-
T ss_pred ---------------------------------CCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCC-
Confidence 11334556899999999999998 6677788889999998764211
Q ss_pred CCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEccc-----------CCCCeEEEEEc-
Q 001391 292 DSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEH-----------IGRGIWRCLYD- 357 (1088)
Q Consensus 292 ~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h-----------~~~~V~~l~~~- 357 (1088)
... .+..|. .+...+|+ +..|+.+ .++.|++|+..+..+..+..+ .. .+.+++|+
T Consensus 237 ------~~~--~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~-~v~~~~~S~ 305 (1045)
T 1k32_A 237 ------DLR--KHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIP-SKFAEDFSP 305 (1045)
T ss_dssp ------SCE--ECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECG-GGGEEEEEE
T ss_pred ------cce--EecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceEeeeeccCccccccccccccc-ccceeeecC
Confidence 111 333443 34455676 6677776 589999999965555555542 22 48899999
Q ss_pred CCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCC-ceEEEEeccCCeEEEE
Q 001391 358 SLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSE-YVRCLHLTSEDTLYIA 436 (1088)
Q Consensus 358 ~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~V~~l~~s~~~~ll~~ 436 (1088)
|||++|++++ ++.|.+|+..+..... +..+.. .++.++|+ +++.++.
T Consensus 306 pdG~~la~~~-~~~i~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~s-dg~~l~~ 353 (1045)
T 1k32_A 306 LDGDLIAFVS-RGQAFIQDVSGTYVLK------------------------------VPEPLRIRYVRRGGD-TKVAFIH 353 (1045)
T ss_dssp CGGGCEEEEE-TTEEEEECTTSSBEEE------------------------------CSCCSCEEEEEECSS-SEEEEEE
T ss_pred CCCCEEEEEE-cCEEEEEcCCCCceEE------------------------------ccCCCcceEEeeeEc-CCCeEEE
Confidence 9999998887 7889999885421111 112223 67889999 8865554
Q ss_pred -ecCCeEE-EEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeee
Q 001391 437 -TNHGYLY-HTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTF 514 (1088)
Q Consensus 437 -t~~g~i~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~ 514 (1088)
+.++.++ .+++ .......+. .+...+..+++++ +++.+++++.++.|++|++.++.....
T Consensus 354 ~s~~~~l~~~~d~---~~~~~~~l~--~~~~~~~~~~~Sp--------DG~~la~~~~~~~v~~~d~~tg~~~~~----- 415 (1045)
T 1k32_A 354 GTREGDFLGIYDY---RTGKAEKFE--ENLGNVFAMGVDR--------NGKFAVVANDRFEIMTVDLETGKPTVI----- 415 (1045)
T ss_dssp EETTEEEEEEEET---TTCCEEECC--CCCCSEEEEEECT--------TSSEEEEEETTSEEEEEETTTCCEEEE-----
T ss_pred EECCCceEEEEEC---CCCCceEec--CCccceeeeEECC--------CCCEEEEECCCCeEEEEECCCCceEEe-----
Confidence 4444454 4443 222322333 3345677777754 458999999999999999987653211
Q ss_pred eeeccccceeeeEEEeecCCCeEEEEECCC----------CeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEE
Q 001391 515 TWSAGIERQLLGTYWCKSLGHRFIFTADPK----------GRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIM 584 (1088)
Q Consensus 515 ~~~~~~~~~~~~~~~~~s~dg~~L~s~~~d----------g~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It 584 (1088)
. ..+...+.. .+++|||++|++++.+ +.|++||+.... +.. ...|...+.
T Consensus 416 -~-~~~~~~v~~--~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~---------------~~~-l~~~~~~~~ 475 (1045)
T 1k32_A 416 -E-RSREAMITD--FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK---------------IFA-ATTENSHDY 475 (1045)
T ss_dssp -E-ECSSSCCCC--EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE---------------EEE-CSCSSSBEE
T ss_pred -c-cCCCCCccc--eEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc---------------EEE-eeCCCcccC
Confidence 1 012222222 4689999999877654 499999987542 011 224667788
Q ss_pred EEEeeeCCCEEEEEcCCCcEEEEeCC
Q 001391 585 CLDASFEDEVLFCGDLRGNLVLFPLL 610 (1088)
Q Consensus 585 ~l~~spdg~~LatGs~dg~I~Iw~~~ 610 (1088)
+++|+|||+.|++++.++...+|+..
T Consensus 476 ~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 476 APAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp EEEECTTSCEEEEEESCCCCCEECSS
T ss_pred CceEcCCCCEEEEEecccCCcCcchh
Confidence 99999999999999998888888754
No 105
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.93 E-value=2.8e-24 Score=245.15 Aligned_cols=285 Identities=13% Similarity=0.087 Sum_probs=200.4
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-E
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-F 94 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~ 94 (1088)
|.++|.+++|+ || +++|++|.+..++|||+.+++.+..... . .+..+++. ++++ .++++ +
T Consensus 18 h~~~V~~v~fs--~d----g~~la~g~~~~~~iw~~~~~~~~~~~~~-~--~~~~~~~~-------~~~~---~~~~~~~ 78 (355)
T 3vu4_A 18 VSNPVTDYEFN--QD----QSCLILSTLKSFEIYNVHPVAHIMSQEM-R--HLSKVRML-------HRTN---YVAFVTG 78 (355)
T ss_dssp -CCCCCEEEEC--TT----SSEEEEECSSEEEEEEETTEEEEEEEEC-S--CCCEEEEC-------TTSS---EEEEECS
T ss_pred CCCceEEEEEC--CC----CCEEEEEcCCEEEEEecCCcceeeeeec-C--CeEEEEEc-------CCCC---EEEEEEC
Confidence 66899999999 99 8999999987799999998877655442 2 36667776 4431 44333 4
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC-ceEEEe
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS-SIILEV 173 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~-~~~~~~ 173 (1088)
+|++|+|||+.. .+.+..+. |...|.+++|++ + .++++ .|+.|++||+.++ +.+..+
T Consensus 79 ~d~~v~iWd~~~---------------~~~~~~~~-~~~~v~~v~~~~---~--~~~~~-~~~~i~i~d~~~~~~~~~~~ 136 (355)
T 3vu4_A 79 VKEVVHIWDDVK---------------KQDVSRIK-VDAPVKDLFLSR---E--FIVVS-YGDVISVFKFGNPWKRITDD 136 (355)
T ss_dssp STTEEEEEETTT---------------TEEEEEEE-CSSCEEEEEECS---S--EEEEE-ETTEEEEEESSTTCCBSSCC
T ss_pred CccEEEEEECCC---------------CcEEEEEE-CCCceEEEEEcC---C--EEEEE-EcCEEEEEECCCCceeeEEe
Confidence 478999999875 34455554 667999999987 4 34444 4889999999987 655544
Q ss_pred ccCCceeEEEEeeecCCCCCcEEEE--EecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee-eE
Q 001391 174 HSPERCLLYSMKLWGDNLEALRIAS--GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN-LF 250 (1088)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~~l~s--g~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~ 250 (1088)
..+ ...+++ ++ ..++. |+.+|.|++||+.+.+...... ... ......+ +.
T Consensus 137 ~~~----~~~~~~---s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~--------------~~~----~~~~~~p~~~ 189 (355)
T 3vu4_A 137 IRF----GGVCEF---SN--GLLVYSNEFNLGQIHITKLQSSGSATTQD--------------QGV----QQKAILGKGV 189 (355)
T ss_dssp EEE----EEEEEE---ET--TEEEEEESSCTTCEEEEECCC------------------------------------CCE
T ss_pred ccC----CceEEE---Ec--cEEEEeCCCcCcEEEEEECCCCCcccccc--------------ccc----cccccCcccE
Confidence 431 111222 22 34444 7899999999998321000000 000 0001123 67
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEEECCCc-EEEEEcCCCcccCCCCceeeeceeee-c-cCcceEEEEEC--CCEEEEEe
Q 001391 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRS-ARIWEVRAEYWKDSDSIEEVGSSVLY-G-HNARVWDCCLT--DSFIITAG 325 (1088)
Q Consensus 251 ~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~-v~iWd~~~~~~~~~~~~~~i~~~~~~-~-h~~~I~~v~~~--~~~l~sg~ 325 (1088)
.+.+|.+.|.+++|+|++++|++++.|++ |++||+.+++ .+. .+. + |...|.+++|+ +.+|++++
T Consensus 190 ~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~--------~~~--~~~~g~h~~~v~~~~~s~~~~~l~s~s 259 (355)
T 3vu4_A 190 LIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV--------LVR--EFRRGLDRADVVDMKWSTDGSKLAVVS 259 (355)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC--------EEE--EEECTTCCSCEEEEEECTTSCEEEEEE
T ss_pred EEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc--------EEE--EEEcCCCCCcEEEEEECCCCCEEEEEE
Confidence 88999999999999999999999999998 9999999853 343 555 5 99999999998 68999999
Q ss_pred CCCcEEEEcCC-Cc--eeEEEcc--------------------cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 326 EDCTCRVWGSD-GK--QLKMIKE--------------------HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 326 ~Dg~i~vWd~~-~~--~~~~~~~--------------------h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
.|++|++||+. +. ....+.. ....+...++|++++++|++++.||.+++|++.
T Consensus 260 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 260 DKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVV 335 (355)
T ss_dssp TTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEE
T ss_pred CCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence 99999999983 21 1111111 111124678999999999999999999999984
No 106
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.93 E-value=5.7e-24 Score=240.68 Aligned_cols=298 Identities=15% Similarity=0.104 Sum_probs=219.0
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CC-EEEEEeCCC
Q 001391 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS-FIITAGEDC 328 (1088)
Q Consensus 252 ~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~-~l~sg~~Dg 328 (1088)
..+|.+.|.+++|+|++++|++++.|+.|++|++.+... ..... ...+|...|.+++|+ +. +|++|+.||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~-----~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 79 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-----NVDLL--QSLRYKHPLLCCNFIDNTDLQIYVGTVQG 79 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-----EEEEE--EEEECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc-----cccce--eeeecCCceEEEEECCCCCcEEEEEcCCC
Confidence 358999999999999999999999999999999987642 11222 566899999999998 67 899999999
Q ss_pred cEEEEcC-CCceeEEEcc--cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeee
Q 001391 329 TCRVWGS-DGKQLKMIKE--HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKI 405 (1088)
Q Consensus 329 ~i~vWd~-~~~~~~~~~~--h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1088)
.|++|++ .......+.. |.. .|.+++|+| +.+|++++.|+.|++||+..... ......
T Consensus 80 ~i~~wd~~~~~~~~~~~~~~~~~-~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~---------------~~~~~~-- 140 (342)
T 1yfq_A 80 EILKVDLIGSPSFQALTNNEANL-GICRICKYG-DDKLIAASWDGLIEVIDPRNYGD---------------GVIAVK-- 140 (342)
T ss_dssp CEEEECSSSSSSEEECBSCCCCS-CEEEEEEET-TTEEEEEETTSEEEEECHHHHTT---------------BCEEEE--
T ss_pred eEEEEEeccCCceEeccccCCCC-ceEEEEeCC-CCEEEEEcCCCeEEEEccccccc---------------cccccc--
Confidence 9999999 8877888888 888 799999999 99999999999999999842000 000000
Q ss_pred CCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEecc-CCcceeEEeeeecCCcceEEEecCC-CCCCCcCCC
Q 001391 406 PNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCD-MDSVNWNKILQVSEGMPIICMDLLS-NEPKYPCGI 483 (1088)
Q Consensus 406 ~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~~s~~~ 483 (1088)
...+..+. +...|.+++|++++ +++++.++.+..|++.. ... .. ......+...+.++++.+ +
T Consensus 141 ---~~~~~~~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~-~~-~~~~~~~~~~i~~i~~~~~~-------- 205 (342)
T 1yfq_A 141 ---NLNSNNTK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDD-NG-TIEESGLKYQIRDVALLPKE-------- 205 (342)
T ss_dssp ---ESCSSSSS-SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTC-CC-EEEECSCSSCEEEEEECSGG--------
T ss_pred ---CCeeeEEe-eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccc-cc-eeeecCCCCceeEEEECCCC--------
Confidence 00011111 44679999999987 88889999999777655 222 11 222344566788888865 4
Q ss_pred CCeEEEecCCCCEEEEEEcCC--CcCcceeeeeeeecc------ccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCC
Q 001391 484 DDWVALGDGKGNMTIVRVVGD--VHTPQLSFTFTWSAG------IERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDP 555 (1088)
Q Consensus 484 ~~~la~g~~dg~I~iw~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~ 555 (1088)
+..+++++.||.|++|+++.. ....+....+..+.. +...+.. .+++|++++|++++.||.|++||+...
T Consensus 206 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~s~~~~~l~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 206 QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS--IEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp GCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEE--EEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred CCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEE--EEEcCCCCEEEEecCCceEEEEcCccH
Confidence 489999999999999999865 110111111211111 0112333 568999999999999999999999854
Q ss_pred CCcccccCCcccceeeeeeecccc-CceEEEEEeeeCCCEEEEEcCCCc-EEEEeC
Q 001391 556 FSSVCYESSKTNNVFLVAEFSSCF-GARIMCLDASFEDEVLFCGDLRGN-LVLFPL 609 (1088)
Q Consensus 556 ~~~~~~~~~~~~~~~l~~~~~~~h-~~~It~l~~spdg~~LatGs~dg~-I~Iw~~ 609 (1088)
. +...+ ..| ...|++++ |++++|++|+.||+ .+.|..
T Consensus 284 ~--------------~~~~~-~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 284 K--------------KIKNF-AKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp E--------------EEEEC-CCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred h--------------Hhhhh-hcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 2 22332 355 89999999 99999999999998 555553
No 107
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=4.3e-24 Score=232.94 Aligned_cols=294 Identities=12% Similarity=0.073 Sum_probs=196.1
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCC---eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG---TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg---~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
..-++.++-+- .. .....-+++++...|++|+..++ +++++.+.++. +|..|.++ ||.. ..+.+
T Consensus 38 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~-~v~~~~~~-------~~~~--~~~~~ 104 (356)
T 2w18_A 38 CSVDVSAMFWE--RA-GCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEV-PVLQIVPV-------PDVY--NLVCV 104 (356)
T ss_dssp CEEEEEEEEEC-------CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSS-CEEEECCC-------TTCC--SCEEE
T ss_pred eEEEEeeeeec--cC-CCCccEEEEeccceEEEcccCCCccceeeEEEeccCc-eeEEEEEc-------Cccc--ceeee
Confidence 44567777665 33 01123566677899999999999 89999997554 89999999 5432 12333
Q ss_pred EECC-CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE--cCCcEEEEEc-CCCc
Q 001391 93 LFGE-KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC--SDNSIRVWDI-SNSS 168 (1088)
Q Consensus 93 ~~gd-~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs--~Dg~V~iWd~-~~~~ 168 (1088)
+-|. ..-.++.+.. +|++....+.+.. .+|...|+++ + +++++.+++ .|+.|++|++ .+++
T Consensus 105 ~~~~~~~~~v~sla~--------spd~~~~~~~l~s-~g~~~~v~~l---~---~g~lv~ss~~g~d~~V~~~~~s~dG~ 169 (356)
T 2w18_A 105 ALGNLEIREIRALFC--------SSDDESEKQVLLK-SGNIKAVLGL---T---KRRLVSSSGTLSDQQVEVMTFAEDGG 169 (356)
T ss_dssp EECSSSEEEEEEECC--------------CCEEEEE-EEEEEEEEEE---T---TTEEEEEESSSTTCEEEEEEECTTSC
T ss_pred eeccccccceEEEEE--------CCCccccccEEEe-CCCeEEEEec---C---CCcEEEecccCCCCcEEEEEECCCCc
Confidence 3343 2223333331 1111111111111 3455566654 5 777776644 5999999999 4477
Q ss_pred eEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee
Q 001391 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1088)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 248 (1088)
.+..+..+... ...++|..-..++.+|++|+.|++|+|||+. +++.
T Consensus 170 ~~~s~~~~~~~-v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~---------------------------------TGk~ 215 (356)
T 2w18_A 170 GKENQFLMPPE-ETILTFAEVQGMQEALLGTTIMNNIVIWNLK---------------------------------TGQL 215 (356)
T ss_dssp EEEEEEECCCS-SCEEEEEEEETSTTEEEEEETTSEEEEEETT---------------------------------TCCE
T ss_pred eeeeeccCCCc-eeeEEeeccCCCCceEEEecCCCcEEEEECC---------------------------------CCcE
Confidence 66654433221 1122221112367999999999999999999 7888
Q ss_pred eEEEeCCC---CCEEEEEEcCCCCEE------------EEEECCCcEEEEEcCCCcccCCCCceeeecee-eeccCcceE
Q 001391 249 LFRLVGHE---GSIFRIEWSSCGSKL------------VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSV-LYGHNARVW 312 (1088)
Q Consensus 249 ~~~~~gh~---~~V~~v~~sp~g~~l------------~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~-~~~h~~~I~ 312 (1088)
++.+.+|. ..+.+++|+|+|.++ ++|+.|++|++||..+++. ...+. .. ..+|...+.
T Consensus 216 l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~-----l~v~~-~~~p~Gh~~~~l 289 (356)
T 2w18_A 216 LKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLS-----VGVML-YCLPPGQAGRFL 289 (356)
T ss_dssp EEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEE-----EEEEE-ECCCTTCCCCEE
T ss_pred EEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEE-----EEEEE-eeccCCCcceeE
Confidence 88888754 467888999999876 6688999999999988643 11110 01 147777777
Q ss_pred EEEECCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 313 DCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 313 ~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
+..+++.++++|+.|++|+|||+ +++++.++.+|....+.+++|+|||++|++|+.|++|+|||+
T Consensus 290 sg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 290 EGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred ccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 77777889999999999999999 899999999998743446899999999999999999999986
No 108
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.93 E-value=6.6e-25 Score=255.12 Aligned_cols=285 Identities=14% Similarity=0.102 Sum_probs=218.8
Q ss_pred eeEEEEEeccCCCCCCCCEEE-EEe-CCeEEEEECCCCe----eEEEEeeeCCcceEEEEecccccccCC-CccceeeEE
Q 001391 19 EISALCFVHLPSHLSSLPFLL-AGS-GSQVLLYDLEAGT----LIRPFQVFHGIRLHGISCNFINCTEGS-VSTRVTFEV 91 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~la-ag~-d~~I~vwd~~tg~----~~~~~~~~~~~~V~~i~~s~~~~~~~~-d~~~~~~~l 91 (1088)
....++++ |+ ...++ +|+ ||.|+|||+.+.. .+..+.+|.+ .|.+++|+ | +++ .++
T Consensus 36 ~~~~~~~~--~~----~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~-~V~~~~~~-------p~~~~---~l~ 98 (402)
T 2aq5_A 36 DSGFCAVN--PK----FMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTA-PVLDIAWC-------PHNDN---VIA 98 (402)
T ss_dssp SSCSEEEC--SS----EEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSS-CEEEEEEC-------TTCTT---EEE
T ss_pred CCCcEEEC--CC----eEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCC-CEEEEEeC-------CCCCC---EEE
Confidence 34567888 76 43333 344 7999999996542 3445666665 79999999 6 552 444
Q ss_pred EEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCC-CEEEEEEcCCcEEEEEcCCCceE
Q 001391 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNSSII 170 (1088)
Q Consensus 92 a~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~-~~lasgs~Dg~V~iWd~~~~~~~ 170 (1088)
+++.|++|+||++........ ..+.+..+.+|...|.+++|+| ++ .+|++|+.|++|++||+.+++.+
T Consensus 99 s~s~dg~v~vw~~~~~~~~~~--------~~~~~~~~~~h~~~v~~~~~~p---~~~~~l~s~~~dg~i~iwd~~~~~~~ 167 (402)
T 2aq5_A 99 SGSEDCTVMVWEIPDGGLVLP--------LREPVITLEGHTKRVGIVAWHP---TAQNVLLSAGCDNVILVWDVGTGAAV 167 (402)
T ss_dssp EEETTSEEEEEECCTTCCSSC--------BCSCSEEEECCSSCEEEEEECS---SBTTEEEEEETTSCEEEEETTTTEEE
T ss_pred EEeCCCeEEEEEccCCCCccc--------cCCceEEecCCCCeEEEEEECc---CCCCEEEEEcCCCEEEEEECCCCCcc
Confidence 555699999999986431100 0145677889999999999999 87 69999999999999999999998
Q ss_pred EEe--ccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee
Q 001391 171 LEV--HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1088)
Q Consensus 171 ~~~--~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 248 (1088)
..+ ..+ ...+.++++ ++++.+|++++.||.|++||++ .+..
T Consensus 168 ~~~~~~~~-~~~v~~~~~---~~~~~~l~~~~~d~~i~iwd~~---------------------------------~~~~ 210 (402)
T 2aq5_A 168 LTLGPDVH-PDTIYSVDW---SRDGALICTSCRDKRVRVIEPR---------------------------------KGTV 210 (402)
T ss_dssp EEECTTTC-CSCEEEEEE---CTTSSCEEEEETTSEEEEEETT---------------------------------TTEE
T ss_pred EEEecCCC-CCceEEEEE---CCCCCEEEEEecCCcEEEEeCC---------------------------------CCce
Confidence 888 444 345677776 5789999999999999999998 6677
Q ss_pred eEEE-eCCCCC-EEEEEEcCCCCEEEEE---ECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEE
Q 001391 249 LFRL-VGHEGS-IFRIEWSSCGSKLVSV---SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFI 321 (1088)
Q Consensus 249 ~~~~-~gh~~~-V~~v~~sp~g~~l~s~---s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l 321 (1088)
+..+ .+|.+. +.++.|+|++.+++++ +.|+.|++||+.+... .+. .....|...+.+++|+ +.+|
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~-------~~~-~~~~~~~~~v~~~~~s~~~~~l 282 (402)
T 2aq5_A 211 VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE-------PLS-LQELDTSSGVLLPFFDPDTNIV 282 (402)
T ss_dssp EEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS-------CSE-EEECCCCSSCEEEEEETTTTEE
T ss_pred eeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC-------Cce-EEeccCCCceeEEEEcCCCCEE
Confidence 7777 788876 9999999999999999 7999999999988532 122 1334677889999998 4666
Q ss_pred E-EEeCCCcEEEEcC-CCce-eEEEccc--CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 322 I-TAGEDCTCRVWGS-DGKQ-LKMIKEH--IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 322 ~-sg~~Dg~i~vWd~-~~~~-~~~~~~h--~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+ +|+.||.|++|++ ++++ +..+..| .. +|.+++|+|++.++++ .|+.+++|++..
T Consensus 283 ~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~-~v~~~~~sp~~~~~~s--~~~~~~~~~l~~ 342 (402)
T 2aq5_A 283 YLCGKGDSSIRYFEITSEAPFLHYLSMFSSKE-SQRGMGYMPKRGLEVN--KCEIARFYKLHE 342 (402)
T ss_dssp EEEETTCSCEEEEEECSSTTCEEEEEEECCSS-CCSEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred EEEEcCCCeEEEEEecCCCcceEeecccccCC-cccceEEeccccccee--cceeEEEEEcCC
Confidence 5 5668999999999 4553 5555544 35 7999999999987764 577999999954
No 109
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.93 E-value=1.1e-23 Score=237.84 Aligned_cols=309 Identities=13% Similarity=0.100 Sum_probs=206.8
Q ss_pred eeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc----eEEEeccCCceeEEEEeeecCCC--CCcEEEEE
Q 001391 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS----IILEVHSPERCLLYSMKLWGDNL--EALRIASG 199 (1088)
Q Consensus 126 ~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~----~~~~~~~~~~~~~~s~~~~~~s~--~~~~l~sg 199 (1088)
..+.+|.+.|++++|+| ++++|++|+.||.|++||+.++. ....+..+. ..+.++++ ++ ++.+|++|
T Consensus 5 ~~~~gH~~~v~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~v~~~~~---~~~~d~~~l~s~ 77 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDF---YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHD-SSIVAIDW---ASPEYGRIIASA 77 (351)
T ss_dssp CEECCCSSCEEEEEECS---SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCS-SCEEEEEE---CCGGGCSEEEEE
T ss_pred ccCcccccceeEEEEcC---CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCC-CcEEEEEE---cCCCCCCEEEEE
Confidence 34579999999999999 99999999999999999998763 444555444 34667776 34 58899999
Q ss_pred ecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCC--CCEEEEEECC
Q 001391 200 TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC--GSKLVSVSDD 277 (1088)
Q Consensus 200 ~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~--g~~l~s~s~D 277 (1088)
+.||.|++||+.+.+.... ......+..+.+|.+.|.+++|+|+ +.++++++.|
T Consensus 78 ~~dg~v~vwd~~~~~~~~~------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 133 (351)
T 3f3f_A 78 SYDKTVKLWEEDPDQEECS------------------------GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND 133 (351)
T ss_dssp ETTSCEEEEEECTTSCTTS------------------------SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred cCCCeEEEEecCCCccccc------------------------ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCC
Confidence 9999999999983221100 0022567788899999999999999 9999999999
Q ss_pred CcEEEEEcCCCcccCCCCc-eeee--ceeeeccCcceEEEEEC-----CCEEEEEeCCCcEEEEcC-CCce--eEEEccc
Q 001391 278 RSARIWEVRAEYWKDSDSI-EEVG--SSVLYGHNARVWDCCLT-----DSFIITAGEDCTCRVWGS-DGKQ--LKMIKEH 346 (1088)
Q Consensus 278 g~v~iWd~~~~~~~~~~~~-~~i~--~~~~~~h~~~I~~v~~~-----~~~l~sg~~Dg~i~vWd~-~~~~--~~~~~~h 346 (1088)
+.|++||+.+.+....... .... .....+|...+.+++|+ +.++++++.|+.+.+|+. .++. +..+.+|
T Consensus 134 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h 213 (351)
T 3f3f_A 134 GILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGH 213 (351)
T ss_dssp CEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCC
T ss_pred CcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCC
Confidence 9999999988654211100 0000 01223688899999996 579999999999988887 4443 6677888
Q ss_pred CCCCeEEEEEcCCC----CEEEEEeCCCCEEEEEcCCCCC-CcccCCccccccCCCcceEEeeeCCCccceeeccCCCCc
Q 001391 347 IGRGIWRCLYDSLS----SLLVTAGFDSAIKVHQFQAFLP-GSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEY 421 (1088)
Q Consensus 347 ~~~~V~~l~~~~dg----~~l~tg~~Dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (1088)
.. .|++++|+|++ ++|++|+.||.|++||+..... ....... ..
T Consensus 214 ~~-~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------------------------~~ 262 (351)
T 3f3f_A 214 KS-LIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESL------------------------------TN 262 (351)
T ss_dssp CS-CEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------------
T ss_pred Cc-ceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcc------------------------------cc
Confidence 88 79999999998 8999999999999999954211 1000000 00
Q ss_pred eEEEEeccCCeEEEEe--cCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEE
Q 001391 422 VRCLHLTSEDTLYIAT--NHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIV 499 (1088)
Q Consensus 422 V~~l~~s~~~~ll~~t--~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw 499 (1088)
+......+........ ..+......++............+ +...+.++++.++ +++|++|+.||.|++|
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~--------~~~l~s~~~dg~v~iw 333 (351)
T 3f3f_A 263 SNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD-HNGEVWSVSWNLT--------GTILSSAGDDGKVRLW 333 (351)
T ss_dssp ----------------------------CCSEEEEEEEEECT-TSSCEEEEEECSS--------SCCEEEEETTSCEEEE
T ss_pred eeccCCCcccccccccccccccceeeeecccccccEEEEEec-ccccEEEEEEcCC--------CCEEEEecCCCcEEEE
Confidence 1111111111111110 011111222333332222222333 3567999988654 4899999999999999
Q ss_pred EEcCCC
Q 001391 500 RVVGDV 505 (1088)
Q Consensus 500 ~~~~~~ 505 (1088)
++.+++
T Consensus 334 ~~~~~~ 339 (351)
T 3f3f_A 334 KATYSN 339 (351)
T ss_dssp EECTTS
T ss_pred ecCcCc
Confidence 998754
No 110
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.1e-23 Score=248.87 Aligned_cols=285 Identities=9% Similarity=0.014 Sum_probs=215.6
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCe---eEEEEeeeCC----------------------------
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGT---LIRPFQVFHG---------------------------- 65 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~---~~~~~~~~~~---------------------------- 65 (1088)
..|+.+++|+ |+ +++|+++.++.|++||+.+|+ .+..+..+..
T Consensus 4 ~~p~~~v~~s--~d----g~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (450)
T 2vdu_B 4 IHPLQNLLTS--RD----GSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLK 77 (450)
T ss_dssp ECCCCEEEEC--SS----SSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-----------------------------
T ss_pred cccEEEEEec--CC----CCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccc
Confidence 3589999999 99 889999989999999999998 6666653211
Q ss_pred -------------------------cceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccc
Q 001391 66 -------------------------IRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETC 119 (1088)
Q Consensus 66 -------------------------~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~ 119 (1088)
..|.+++|+ |+++ .++++++ |+.|+||++....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-------~d~~---~l~~~~~~dg~v~iwd~~~~~----------- 136 (450)
T 2vdu_B 78 SNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLT-------SDES---RLIACADSDKSLLVFDVDKTS----------- 136 (450)
T ss_dssp ----------------------CCCCCEEEEEEC-------TTSS---EEEEEEGGGTEEEEEEECSSS-----------
T ss_pred cCcCccccccCccccCCCCCCCccCCceEEEEEc-------CCCC---EEEEEECCCCeEEEEECcCCC-----------
Confidence 159999999 7773 4446664 8999999998311
Q ss_pred cccceeeecc--CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEE----EeccCCceeEEEEeeecCCCC-
Q 001391 120 VNLSLVQSLP--RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL----EVHSPERCLLYSMKLWGDNLE- 192 (1088)
Q Consensus 120 ~~~~~~~~l~--~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~----~~~~~~~~~~~s~~~~~~s~~- 192 (1088)
.+.+..+. .|...|.+++|+| ++++|++|+.|+.|++|++.+++... .+..+. ..+.++++ +|+
T Consensus 137 --~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~---sp~~ 207 (450)
T 2vdu_B 137 --KNVLKLRKRFCFSKRPNAISIAE---DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHV-SMLTDVHL---IKDS 207 (450)
T ss_dssp --SSCEEEEEEEECSSCEEEEEECT---TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECS-SCEEEEEE---EECT
T ss_pred --CceeeeeecccCCCCceEEEEcC---CCCEEEEEeCCCcEEEEecCCcccccccceeeeccc-CceEEEEE---cCCC
Confidence 23344443 5778999999999 99999999999999999998776443 333333 34666666 466
Q ss_pred --CcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEE-EeCCCCCEEEEEEcCCCC
Q 001391 193 --ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR-LVGHEGSIFRIEWSSCGS 269 (1088)
Q Consensus 193 --~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~gh~~~V~~v~~sp~g~ 269 (1088)
+.+|++|+.|+.|++||+. .+..+.. +.+|.+.|.+++|+ +++
T Consensus 208 ~~~~~l~s~~~d~~i~vwd~~---------------------------------~~~~~~~~~~~h~~~v~~~~~s-d~~ 253 (450)
T 2vdu_B 208 DGHQFIITSDRDEHIKISHYP---------------------------------QCFIVDKWLFGHKHFVSSICCG-KDY 253 (450)
T ss_dssp TSCEEEEEEETTSCEEEEEES---------------------------------CTTCEEEECCCCSSCEEEEEEC-STT
T ss_pred CCCcEEEEEcCCCcEEEEECC---------------------------------CCceeeeeecCCCCceEEEEEC-CCC
Confidence 8899999999999999998 4555555 55899999999999 999
Q ss_pred EEEEEECCCcEEEEEcCCCcccCCCCceeeec------e--------------eeeccCcceEEEEEC--CCEEEEEe-C
Q 001391 270 KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS------S--------------VLYGHNARVWDCCLT--DSFIITAG-E 326 (1088)
Q Consensus 270 ~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~------~--------------~~~~h~~~I~~v~~~--~~~l~sg~-~ 326 (1088)
+|++++.|+.|++||+.+++. ...+.. + ....+...|.+++|+ +.+|++++ .
T Consensus 254 ~l~s~~~d~~v~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~ 328 (450)
T 2vdu_B 254 LLLSAGGDDKIFAWDWKTGKN-----LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA 328 (450)
T ss_dssp EEEEEESSSEEEEEETTTCCE-----EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT
T ss_pred EEEEEeCCCeEEEEECCCCcE-----eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC
Confidence 999999999999999998653 111110 0 000234568899998 67888888 8
Q ss_pred CCcEEEEcC---CC---ceeEEEcccCCCCeEEEEEcCCCCEEEEEeC------CCCEEEEEcC
Q 001391 327 DCTCRVWGS---DG---KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF------DSAIKVHQFQ 378 (1088)
Q Consensus 327 Dg~i~vWd~---~~---~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~------Dg~I~iwd~~ 378 (1088)
|+.|++|++ .+ +.+..+..| + .|++++|+|++.++++++. +..|.+|.++
T Consensus 329 d~~i~iw~~~~~~~~~l~~~~~~~~~-~-~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 329 TKCIIILEMSEKQKGDLALKQIITFP-Y-NVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp CSEEEEEEECSSSTTCEEEEEEEECS-S-CEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred CCeEEEEEeccCCCCceeeccEeccC-C-ceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 999999998 33 456667777 4 6999999996544444333 5568999874
No 111
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.93 E-value=1.8e-23 Score=245.35 Aligned_cols=297 Identities=13% Similarity=0.208 Sum_probs=222.0
Q ss_pred eeeEEEEEeccCCCCC------CCCEEEEEeC-----CeEEEEECC--------------------------CCee-EEE
Q 001391 18 GEISALCFVHLPSHLS------SLPFLLAGSG-----SQVLLYDLE--------------------------AGTL-IRP 59 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~------~~~~laag~d-----~~I~vwd~~--------------------------tg~~-~~~ 59 (1088)
-|..++.|. |+..+ ...++++|+- ..|.|+++. +++. +..
T Consensus 46 wp~l~~~~~--p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 123 (430)
T 2xyi_A 46 WPSLTAQWL--PDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEI 123 (430)
T ss_dssp SCCSCEEEC--SCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEE
T ss_pred CCceEEEEC--cccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEE
Confidence 356788888 87211 0146777761 478887643 1222 223
Q ss_pred EeeeCCcceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEE
Q 001391 60 FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDV 138 (1088)
Q Consensus 60 ~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v 138 (1088)
...|.+ .|.+++|+ |++. .++++++ ++.|++|++........ .....+....+.+|...|.++
T Consensus 124 ~~~h~~-~v~~l~~~-------p~~~---~~lat~~~dg~V~vwd~~~~~~~~~-----~~~~~~~~~~~~~h~~~v~~l 187 (430)
T 2xyi_A 124 KINHEG-EVNRARYM-------PQNA---CVIATKTPSSDVLVFDYTKHPSKPE-----PSGECQPDLRLRGHQKEGYGL 187 (430)
T ss_dssp EEEESS-CCSEEEEE-------TTEE---EEEEEECSSSCEEEEEGGGSCSSCC-----TTCCCCCSEEEECCSSCCCCE
T ss_pred EEcCCC-cEEEEEEC-------CCCC---cEEEEECCCCcEEEEECCCcccccC-----ccccCCCcEEecCCCCCeEEE
Confidence 334454 79999999 6521 5666655 89999999985321110 001245677888999999999
Q ss_pred EEecccCCCC-EEEEEEcCCcEEEEEcCCCce-------EEEeccCCceeEEEEeeecCCC-CCcEEEEEecCCeEEEEE
Q 001391 139 CFLKVCNGNR-SLAIGCSDNSIRVWDISNSSI-------ILEVHSPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWK 209 (1088)
Q Consensus 139 ~f~p~~~d~~-~lasgs~Dg~V~iWd~~~~~~-------~~~~~~~~~~~~~s~~~~~~s~-~~~~l~sg~~dg~I~vwd 209 (1088)
+|+| ++. +|++|+.||+|++||+..+.. ...+..+ ...+.++++ ++ ++.++++++.||.|++||
T Consensus 188 ~~~~---~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~---~p~~~~~l~s~~~dg~i~i~d 260 (430)
T 2xyi_A 188 SWNP---NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGH-TAVVEDVAW---HLLHESLFGSVADDQKLMIWD 260 (430)
T ss_dssp EECT---TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCC-SSCEEEEEE---CSSCTTEEEEEETTSEEEEEE
T ss_pred EeCC---CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCC-CCCEeeeEE---eCCCCCEEEEEeCCCeEEEEE
Confidence 9999 887 999999999999999987422 2333333 334667776 34 578999999999999999
Q ss_pred eccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCC-EEEEEECCCcEEEEEcCCC
Q 001391 210 VDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAE 288 (1088)
Q Consensus 210 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~-~l~s~s~Dg~v~iWd~~~~ 288 (1088)
+++.. ....+..+.+|...|.+++|+|+++ .+++++.|+.|++||++..
T Consensus 261 ~~~~~------------------------------~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~ 310 (430)
T 2xyi_A 261 TRNNN------------------------------TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 310 (430)
T ss_dssp TTCSC------------------------------SSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred CCCCC------------------------------CCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC
Confidence 98210 1246667789999999999999987 6899999999999999874
Q ss_pred cccCCCCceeeeceeeeccCcceEEEEEC--C-CEEEEEeCCCcEEEEcCCC---------------ceeEEEcccCCCC
Q 001391 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLT--D-SFIITAGEDCTCRVWGSDG---------------KQLKMIKEHIGRG 350 (1088)
Q Consensus 289 ~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~-~~l~sg~~Dg~i~vWd~~~---------------~~~~~~~~h~~~~ 350 (1088)
. ..+. .+.+|...|++++|+ + .+|++++.|+.|++||+.. +.+..+.+|.. .
T Consensus 311 ~-------~~~~--~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~ 380 (430)
T 2xyi_A 311 K-------LKLH--SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-K 380 (430)
T ss_dssp T-------SCSE--EEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-C
T ss_pred C-------CCeE--EeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCC-C
Confidence 2 2332 677899999999998 3 5799999999999999932 66777888887 6
Q ss_pred eEEEEEcCCCC-EEEEEeCCCCEEEEEcCC
Q 001391 351 IWRCLYDSLSS-LLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 351 V~~l~~~~dg~-~l~tg~~Dg~I~iwd~~~ 379 (1088)
|.+++|+|++. +|++++.||.|++|++..
T Consensus 381 v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 381 ISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp EEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred ceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 99999999999 999999999999999964
No 112
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.93 E-value=2.4e-23 Score=237.58 Aligned_cols=294 Identities=11% Similarity=0.117 Sum_probs=216.1
Q ss_pred EEECCCCeeEEEEeeeCCcceEEEEecccccccCCC---ccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccce
Q 001391 48 LYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSV---STRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSL 124 (1088)
Q Consensus 48 vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d---~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~ 124 (1088)
.|+....+.+..+..|.+ .|.+++|+ |+ |+ .+++++.|+.|+||++.... ...
T Consensus 23 ~~~~~~~~~~~~~~~h~~-~v~~~~~~-------~~~~~g~---~l~~~~~dg~i~iw~~~~~~-------------~~~ 78 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDD-SIGCLSFS-------PPTLPGN---FLIAGSWANDVRCWEVQDSG-------------QTI 78 (368)
T ss_dssp CCSSCTTCCEECSSCCSS-CEEEEEEC-------CTTSSSE---EEEEEETTSEEEEEEECTTS-------------CEE
T ss_pred cCCCCCcceeEeccCCCC-ceEEEEEc-------CCCCCce---EEEEECCCCcEEEEEcCCCC-------------cee
Confidence 345555667777777666 79999999 55 42 44455569999999998632 244
Q ss_pred eeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCe
Q 001391 125 VQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNE 204 (1088)
Q Consensus 125 ~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~ 204 (1088)
...+.+|...|.+++|+| ++++|++|+.|+.|++||+.+++.+.... + ...+.++.+.. ++++.+|++++.||.
T Consensus 79 ~~~~~~h~~~v~~~~~~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~-~~~v~~~~~~~-~~~~~~l~~~~~dg~ 152 (368)
T 3mmy_A 79 PKAQQMHTGPVLDVCWSD---DGSKVFTASCDKTAKMWDLSSNQAIQIAQ-H-DAPVKTIHWIK-APNYSCVMTGSWDKT 152 (368)
T ss_dssp EEEEEECSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTTEEEEEEE-C-SSCEEEEEEEE-CSSCEEEEEEETTSE
T ss_pred EEEeccccCCEEEEEECc---CCCEEEEEcCCCcEEEEEcCCCCceeecc-c-cCceEEEEEEe-CCCCCEEEEccCCCc
Confidence 467789999999999999 99999999999999999999988776443 2 23355665532 477889999999999
Q ss_pred EEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 001391 205 IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (1088)
Q Consensus 205 I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd 284 (1088)
|++||++ ..+.+..+..|. .+.++.+.+ ..+++++.++.+++|+
T Consensus 153 i~vwd~~---------------------------------~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~i~~~~ 196 (368)
T 3mmy_A 153 LKFWDTR---------------------------------SSNPMMVLQLPE-RCYCADVIY--PMAVVATAERGLIVYQ 196 (368)
T ss_dssp EEEECSS---------------------------------CSSCSEEEECSS-CEEEEEEET--TEEEEEEGGGCEEEEE
T ss_pred EEEEECC---------------------------------CCcEEEEEecCC-CceEEEecC--CeeEEEeCCCcEEEEE
Confidence 9999998 566677777664 566666654 5889999999999999
Q ss_pred cCCCcccCCCCceeeec-eeeeccCcceEEEEECCC----EEEEEeCCCcEEEEcCC-C---ceeEEEcccCCC------
Q 001391 285 VRAEYWKDSDSIEEVGS-SVLYGHNARVWDCCLTDS----FIITAGEDCTCRVWGSD-G---KQLKMIKEHIGR------ 349 (1088)
Q Consensus 285 ~~~~~~~~~~~~~~i~~-~~~~~h~~~I~~v~~~~~----~l~sg~~Dg~i~vWd~~-~---~~~~~~~~h~~~------ 349 (1088)
+..... .... .....|...+.++...+. .+++++.||.+++|++. . +.+..+..|...
T Consensus 197 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (368)
T 3mmy_A 197 LENQPS-------EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSA 269 (368)
T ss_dssp CSSSCE-------EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CC
T ss_pred eccccc-------hhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccc
Confidence 987532 2210 122233334444444433 39999999999999993 3 556777777642
Q ss_pred -----CeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEE
Q 001391 350 -----GIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRC 424 (1088)
Q Consensus 350 -----~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 424 (1088)
+|++++|+|++++|++++.||.|++||+.... .+..+..+...|++
T Consensus 270 ~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~-----------------------------~~~~~~~~~~~v~~ 320 (368)
T 3mmy_A 270 PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART-----------------------------KLKTSEQLDQPISA 320 (368)
T ss_dssp CEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE-----------------------------EEEECCCCSSCEEE
T ss_pred cccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc-----------------------------EEEEecCCCCCceE
Confidence 49999999999999999999999999985321 12223455678999
Q ss_pred EEeccCCeEEEE-ecCCeEE
Q 001391 425 LHLTSEDTLYIA-TNHGYLY 443 (1088)
Q Consensus 425 l~~s~~~~ll~~-t~~g~i~ 443 (1088)
++|+|++.++++ +.++...
T Consensus 321 ~~~s~~g~~l~~~s~d~~~~ 340 (368)
T 3mmy_A 321 CCFNHNGNIFAYASSYDWSK 340 (368)
T ss_dssp EEECTTSSCEEEEECCCSTT
T ss_pred EEECCCCCeEEEEecccccc
Confidence 999999965554 4555433
No 113
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=3.2e-22 Score=261.30 Aligned_cols=441 Identities=9% Similarity=-0.011 Sum_probs=291.5
Q ss_pred ceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d 146 (1088)
.+...+|| ++ .++...++.|.+|++... ....+.+|...|.+++|+| |
T Consensus 16 ~~~~~~~S-------~~------~iaf~~~~~l~~~~~~gg----------------~~~~lt~~~~~v~~~~~SP---D 63 (1045)
T 1k32_A 16 LLLNPDIH-------GD------RIIFVCCDDLWEHDLKSG----------------STRKIVSNLGVINNARFFP---D 63 (1045)
T ss_dssp CCEEEEEE-------TT------EEEEEETTEEEEEETTTC----------------CEEEEECSSSEEEEEEECT---T
T ss_pred eEeCcEEe-------CC------EEEEEECCcEEEEECCCC----------------cEEEeeeCCCcccCeEECC---C
Confidence 57888888 43 444444579999998742 2345668999999999999 9
Q ss_pred CCEEEEEEcC------CcEEEEEcCCCceEEEeccCCcee------EEEEeeecCCCCCcEEEEEecC------CeEEEE
Q 001391 147 NRSLAIGCSD------NSIRVWDISNSSIILEVHSPERCL------LYSMKLWGDNLEALRIASGTIY------NEIIVW 208 (1088)
Q Consensus 147 ~~~lasgs~D------g~V~iWd~~~~~~~~~~~~~~~~~------~~s~~~~~~s~~~~~l~sg~~d------g~I~vw 208 (1088)
|++||.++.+ ..|.+||+.+++ ...+..+.... +.+++| +||+.++++++.+ ..|.+|
T Consensus 64 G~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~---SpDg~ll~~~~~~~~~~~~~~l~~~ 139 (1045)
T 1k32_A 64 GRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGF---DPDGNLIISTDAMQPFSSMTCLYRV 139 (1045)
T ss_dssp SSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEE---CTTCCEEEEECTTSSSTTCCEEEEE
T ss_pred CCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccC---CCCCEEEEEECCcCCCcccceEEEE
Confidence 9999988654 379999998876 45555544332 145555 6888877777754 356667
Q ss_pred EeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC------------
Q 001391 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD------------ 276 (1088)
Q Consensus 209 d~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~------------ 276 (1088)
++. .+.. ..+..+. ...++|+| | ++++++.
T Consensus 140 ~~~---------------------------------~g~~-~~l~~~~--~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g 181 (1045)
T 1k32_A 140 END---------------------------------GINF-VPLNLGP--ATHILFAD-G-RRVIGRNTFELPHWKGYRG 181 (1045)
T ss_dssp EGG---------------------------------GTEE-EECCSCS--CSEEEEET-T-EEEEEESCSCCTTSTTCCS
T ss_pred ECC---------------------------------CCCe-EEecCCC--cceeeeCC-C-EEEEeccCCCccccccccC
Confidence 765 2322 2233332 34577999 7 8888763
Q ss_pred CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCC-EEEEEeCCCcEEEEcC--CCceeEEEcccCCCCeEE
Q 001391 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDS-FIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWR 353 (1088)
Q Consensus 277 Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~-~l~sg~~Dg~i~vWd~--~~~~~~~~~~h~~~~V~~ 353 (1088)
+...++|..... .... .+.+|...+.++.|++. ++++++.|+++++|.+ .+.....+..|.. +..
T Consensus 182 ~~~~~lw~~~~~--------~~~~--~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~--~~~ 249 (1045)
T 1k32_A 182 GTRGKIWIEVNS--------GAFK--KIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD--YYP 249 (1045)
T ss_dssp TTCCEEEEEEET--------TEEE--EEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCS--SCE
T ss_pred CCcCCEEEECCC--------CCeE--ECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCC--cce
Confidence 334567754332 1122 45789999999999854 5567778899999986 4666677766653 667
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEec-cCCe
Q 001391 354 CLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLT-SEDT 432 (1088)
Q Consensus 354 l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~~ 432 (1088)
.+|+|||++|+.+ .++.|.+|++....+..+..+. ......+..+...+..++|+ |+|+
T Consensus 250 ~~~SpDG~~la~~-~~~~i~~~d~~~~~l~~l~~~~-------------------~~~~~~~~~~~~~v~~~~~S~pdG~ 309 (1045)
T 1k32_A 250 RHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEIGD-------------------LESPEDRIISIPSKFAEDFSPLDGD 309 (1045)
T ss_dssp EEEEESSSCEEEE-ETTEEEEECTTTCCEEECCCCC-------------------CCBCCSEEEECGGGGEEEEEECGGG
T ss_pred eeEcCCCCEEEEE-eCCEEEEecCCceEeeeeccCc-------------------ccccccccccccccceeeecCCCCC
Confidence 7999999988887 5899999998433222111110 00000011233468899999 9998
Q ss_pred EEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEE-EEEEcCCCcCccee
Q 001391 433 LYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMT-IVRVVGDVHTPQLS 511 (1088)
Q Consensus 433 ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~-iw~~~~~~~~~~~~ 511 (1088)
.++...++.++.+++... .... ...+....+..+.+. ++..+++++.++.+. +|++..+....
T Consensus 310 ~la~~~~~~i~~~~~~~~---~~~~-~~~~~~~~~~~~~~s---------dg~~l~~~s~~~~l~~~~d~~~~~~~~--- 373 (1045)
T 1k32_A 310 LIAFVSRGQAFIQDVSGT---YVLK-VPEPLRIRYVRRGGD---------TKVAFIHGTREGDFLGIYDYRTGKAEK--- 373 (1045)
T ss_dssp CEEEEETTEEEEECTTSS---BEEE-CSCCSCEEEEEECSS---------SEEEEEEEETTEEEEEEEETTTCCEEE---
T ss_pred EEEEEEcCEEEEEcCCCC---ceEE-ccCCCcceEEeeeEc---------CCCeEEEEECCCceEEEEECCCCCceE---
Confidence 777777888886554332 2212 222322255555553 346788877777787 88876543211
Q ss_pred eeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeC
Q 001391 512 FTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFE 591 (1088)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spd 591 (1088)
.. .+...+. ..+++|||++|++++.++.|++||+..+.. . .....|...+.+++||||
T Consensus 374 ----l~-~~~~~~~--~~~~SpDG~~la~~~~~~~v~~~d~~tg~~------------~---~~~~~~~~~v~~~~~SpD 431 (1045)
T 1k32_A 374 ----FE-ENLGNVF--AMGVDRNGKFAVVANDRFEIMTVDLETGKP------------T---VIERSREAMITDFTISDN 431 (1045)
T ss_dssp ----CC-CCCCSEE--EEEECTTSSEEEEEETTSEEEEEETTTCCE------------E---EEEECSSSCCCCEEECTT
T ss_pred ----ec-CCcccee--eeEECCCCCEEEEECCCCeEEEEECCCCce------------E---EeccCCCCCccceEECCC
Confidence 11 1111122 256899999999999999999999975431 1 112257788999999999
Q ss_pred CCEEEEEcCCC----------cEEEEeCCcccccccccccccccCcceeecccccccceeEEEEEeccCCceEEEEecCC
Q 001391 592 DEVLFCGDLRG----------NLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGD 661 (1088)
Q Consensus 592 g~~LatGs~dg----------~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~hg~~~Vtsv~~~~~~~~~~~l~t~g~D 661 (1088)
|++|++++.++ .|++||+.++.. ..+.++ . ..+.++.|+ +++.+|+.++.+
T Consensus 432 G~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~--------------~~l~~~-~-~~~~~~~~s---pdG~~l~~~s~~ 492 (1045)
T 1k32_A 432 SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI--------------FAATTE-N-SHDYAPAFD---ADSKNLYYLSYR 492 (1045)
T ss_dssp SCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE--------------EECSCS-S-SBEEEEEEC---TTSCEEEEEESC
T ss_pred CCeEEEEecCccccccCCCCCeEEEEECCCCcE--------------EEeeCC-C-cccCCceEc---CCCCEEEEEecc
Confidence 99999887754 899999875311 112222 2 457788888 778889999988
Q ss_pred CeEEEEEee
Q 001391 662 GCICYLEYD 670 (1088)
Q Consensus 662 g~i~iw~~~ 670 (1088)
+..+.|+..
T Consensus 493 ~~~~~~~~~ 501 (1045)
T 1k32_A 493 SLDPSPDRV 501 (1045)
T ss_dssp CCCCEECSS
T ss_pred cCCcCcchh
Confidence 888888753
No 114
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.92 E-value=6.1e-24 Score=246.93 Aligned_cols=260 Identities=10% Similarity=0.136 Sum_probs=202.0
Q ss_pred CCCCCceEEecCCCc-----------eeeeeEEEEEeccC-CCCCCCCEEEEEe-CCeEEEEECCCC-------eeEEEE
Q 001391 1 MGKKDLSEWRLDVGQ-----------YLGEISALCFVHLP-SHLSSLPFLLAGS-GSQVLLYDLEAG-------TLIRPF 60 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~-----------~~~~V~~v~fs~~p-d~~~~~~~laag~-d~~I~vwd~~tg-------~~~~~~ 60 (1088)
+.||.|+||++.+.. |.++|++++|+ | + +.+|++|+ |+.|+|||+.++ +.+..+
T Consensus 54 ~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~--p~~----~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~ 127 (402)
T 2aq5_A 54 SGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWC--PHN----DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL 127 (402)
T ss_dssp SSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEEC--TTC----TTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE
T ss_pred cCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeC--CCC----CCEEEEEeCCCeEEEEEccCCCCccccCCceEEe
Confidence 468999999985531 67899999999 9 7 78999988 799999999988 667888
Q ss_pred eeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeec--cCCCCcEEEE
Q 001391 61 QVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL--PRLSHWVFDV 138 (1088)
Q Consensus 61 ~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l--~~h~~~I~~v 138 (1088)
.+|.. .|.+++|+ |+++ ..+++++.|+.|++||+.. .+.+..+ .+|.+.|.++
T Consensus 128 ~~h~~-~v~~~~~~-------p~~~--~~l~s~~~dg~i~iwd~~~---------------~~~~~~~~~~~~~~~v~~~ 182 (402)
T 2aq5_A 128 EGHTK-RVGIVAWH-------PTAQ--NVLLSAGCDNVILVWDVGT---------------GAAVLTLGPDVHPDTIYSV 182 (402)
T ss_dssp ECCSS-CEEEEEEC-------SSBT--TEEEEEETTSCEEEEETTT---------------TEEEEEECTTTCCSCEEEE
T ss_pred cCCCC-eEEEEEEC-------cCCC--CEEEEEcCCCEEEEEECCC---------------CCccEEEecCCCCCceEEE
Confidence 88766 79999999 6652 1444555699999999985 3456667 7899999999
Q ss_pred EEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEe-ccCCceeEEEEeeecCCCCCcEEEEE---ecCCeEEEEEeccCc
Q 001391 139 CFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV-HSPERCLLYSMKLWGDNLEALRIASG---TIYNEIIVWKVDWEH 214 (1088)
Q Consensus 139 ~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~-~~~~~~~~~s~~~~~~s~~~~~l~sg---~~dg~I~vwd~~~~~ 214 (1088)
+|+| ++++|++++.|+.|++||+.+++.+..+ ..+....+..+.+ ++++.+|++| +.|+.|++||+.+.
T Consensus 183 ~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~g~~~~~d~~i~iwd~~~~- 255 (402)
T 2aq5_A 183 DWSR---DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF---VSEGKILTTGFSRMSERQVALWDTKHL- 255 (402)
T ss_dssp EECT---TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEE---CSTTEEEEEEECTTCCEEEEEEETTBC-
T ss_pred EECC---CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEE---cCCCcEEEEeccCCCCceEEEEcCccc-
Confidence 9999 9999999999999999999999998888 5555443455555 5788999999 79999999999811
Q ss_pred cccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE-eCCCCCEEEEEEcCCCCEEEE-EECCCcEEEEEcCCCcccC
Q 001391 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCGSKLVS-VSDDRSARIWEVRAEYWKD 292 (1088)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~v~~sp~g~~l~s-~s~Dg~v~iWd~~~~~~~~ 292 (1088)
..++... ..|...|.+++|+|+++++++ ++.|+.|++||+.+++.
T Consensus 256 -------------------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~-- 302 (402)
T 2aq5_A 256 -------------------------------EEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP-- 302 (402)
T ss_dssp -------------------------------SSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT--
T ss_pred -------------------------------cCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc--
Confidence 1112222 357788999999999999865 55799999999988641
Q ss_pred CCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcCC
Q 001391 293 SDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSD 336 (1088)
Q Consensus 293 ~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~~ 336 (1088)
.+.......|...|.+++|++...+.++.++.+++|++.
T Consensus 303 -----~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~ 341 (402)
T 2aq5_A 303 -----FLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIARFYKLH 341 (402)
T ss_dssp -----CEEEEEEECCSSCCSEEEECCGGGSCGGGTEEEEEEEEE
T ss_pred -----ceEeecccccCCcccceEEecccccceecceeEEEEEcC
Confidence 121112233668999999994322233567799999983
No 115
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.5e-23 Score=244.41 Aligned_cols=205 Identities=13% Similarity=0.187 Sum_probs=167.0
Q ss_pred cCCCCcEEEEEEecccCCCCEE-EEEEcCCcEEEEEcC--CCceEEEeccC-CceeEEEEeeecCCCCCcEEEEEecCCe
Q 001391 129 PRLSHWVFDVCFLKVCNGNRSL-AIGCSDNSIRVWDIS--NSSIILEVHSP-ERCLLYSMKLWGDNLEALRIASGTIYNE 204 (1088)
Q Consensus 129 ~~h~~~I~~v~f~p~~~d~~~l-asgs~Dg~V~iWd~~--~~~~~~~~~~~-~~~~~~s~~~~~~s~~~~~l~sg~~dg~ 204 (1088)
++|.+.|++++|+| ++++| ++|+.|++|++||+. +++.+..+..+ ....+.++++ +|++.+|++|+.+|.
T Consensus 99 ~~~~~~v~~~~~s~---d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~---sp~~~~l~~~~~~g~ 172 (450)
T 2vdu_B 99 PPIYSYIRNLRLTS---DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISI---AEDDTTVIIADKFGD 172 (450)
T ss_dssp -CCCCCEEEEEECT---TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEE---CTTSSEEEEEETTSE
T ss_pred CccCCceEEEEEcC---CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEE---cCCCCEEEEEeCCCc
Confidence 46777899999999 99986 899999999999999 88877776532 2234566666 688999999999999
Q ss_pred EEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCC---CCEEEEEECCCcEE
Q 001391 205 IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC---GSKLVSVSDDRSAR 281 (1088)
Q Consensus 205 I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~---g~~l~s~s~Dg~v~ 281 (1088)
|++|++.+.+.. ......+.+|.+.|.+++|+|+ +++|++++.|+.|+
T Consensus 173 v~~~~~~~~~~~-----------------------------~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~ 223 (450)
T 2vdu_B 173 VYSIDINSIPEE-----------------------------KFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIK 223 (450)
T ss_dssp EEEEETTSCCCS-----------------------------SCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEE
T ss_pred EEEEecCCcccc-----------------------------cccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEE
Confidence 999998721110 0023355689999999999999 99999999999999
Q ss_pred EEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEcccC------------
Q 001391 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHI------------ 347 (1088)
Q Consensus 282 iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~------------ 347 (1088)
+||+.+++. +. ..+.+|...|.+++|+ +.+|++++.|++|++||+ +++.+..+..+.
T Consensus 224 vwd~~~~~~--------~~-~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (450)
T 2vdu_B 224 ISHYPQCFI--------VD-KWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLA 294 (450)
T ss_dssp EEEESCTTC--------EE-EECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC
T ss_pred EEECCCCce--------ee-eeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccc
Confidence 999987532 32 1356899999999997 889999999999999999 788777775321
Q ss_pred ------------CCCeEEEEEcCCCCEEEEEe-CCCCEEEEEc
Q 001391 348 ------------GRGIWRCLYDSLSSLLVTAG-FDSAIKVHQF 377 (1088)
Q Consensus 348 ------------~~~V~~l~~~~dg~~l~tg~-~Dg~I~iwd~ 377 (1088)
...|.+++++|++++|++++ .|+.|++|++
T Consensus 295 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 295 PPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp ----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred cccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 12699999999999999999 8999999999
No 116
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.2e-24 Score=269.79 Aligned_cols=255 Identities=17% Similarity=0.175 Sum_probs=201.9
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECC--CCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLE--AGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~--tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
|.++|++++|+ |+ +++|++|+ ||.|+|||+. +++.+..+..|.+ .|.+++|++. ++++ .+++
T Consensus 8 H~~~V~~l~~s--~d----g~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~-~V~~l~~s~~-----~~~~---~l~s 72 (753)
T 3jro_A 8 HNELIHDAVLD--YY----GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG-PVWRVDWAHP-----KFGT---ILAS 72 (753)
T ss_dssp CCCCEEEECCC--SS----SCCEEEEETTTEEEEEEEETTEEEEEEEECCCSS-CEEEEEECCT-----TSCS---EEEE
T ss_pred CcceeEEEEEC--CC----CCeEEEEECCCcEEEEecCCCCCccceeccCCcC-ceEEEEecCC-----CCCC---EEEE
Confidence 67899999999 99 88899887 7999999998 5577888888766 7999999932 2252 5555
Q ss_pred EECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC--CCEEEEEEcCCcEEEEEcCCCce-
Q 001391 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG--NRSLAIGCSDNSIRVWDISNSSI- 169 (1088)
Q Consensus 93 ~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d--~~~lasgs~Dg~V~iWd~~~~~~- 169 (1088)
++.|++|++||+.... ...+..+.+|...|.+++|+| + +.++++|+.||.|++||+.++..
T Consensus 73 ~s~Dg~I~vwd~~~~~-------------~~~~~~~~~h~~~V~~v~~sp---~~~~~~l~sgs~dg~I~vwdl~~~~~~ 136 (753)
T 3jro_A 73 CSYDGKVLIWKEENGR-------------WSQIAVHAVHSASVNSVQWAP---HEYGPLLLVASSDGKVSVVEFKENGTT 136 (753)
T ss_dssp EETTSCEEEEEEETTE-------------EEEEEEECCCSSCEEEEEECC---GGGCSEEEEEETTSEEEEEECCSSSCC
T ss_pred EeCCCeEEEEECCCCc-------------ccccccccCCCCCeEEEEECC---CCCCCEEEEEeCCCcEEEEEeecCCCc
Confidence 5669999999998642 447778889999999999999 8 89999999999999999987732
Q ss_pred -EEEeccCCceeEEEEeeecC----------CCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeE
Q 001391 170 -ILEVHSPERCLLYSMKLWGD----------NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (1088)
Q Consensus 170 -~~~~~~~~~~~~~s~~~~~~----------s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 238 (1088)
...+..+ ...+.++.+.+. .+++..+++|+.||.|++||+.+..
T Consensus 137 ~~~~~~~~-~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~------------------------ 191 (753)
T 3jro_A 137 SPIIIDAH-AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA------------------------ 191 (753)
T ss_dssp CCEEEECC-SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT------------------------
T ss_pred ceeEeecC-CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc------------------------
Confidence 3333333 334666666321 1158899999999999999998211
Q ss_pred ecccccceeeeEEEeCCCCCEEEEEEcCC---CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEE
Q 001391 239 LQDQQHTAVNLFRLVGHEGSIFRIEWSSC---GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC 315 (1088)
Q Consensus 239 ~~~~~~~~~~~~~~~gh~~~V~~v~~sp~---g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~ 315 (1088)
........+.+|.+.|.+++|+|+ ++++++++.||.|++||+.++.. ..........+|...|++++
T Consensus 192 -----~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~-----~~~~~~~~~~~~~~~v~~l~ 261 (753)
T 3jro_A 192 -----QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG-----PWKKTLLKEEKFPDVLWRAS 261 (753)
T ss_dssp -----TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS-----CCBCCBSSSSCCSSCCCCEE
T ss_pred -----ccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC-----cceeEEeccCCCCCceEEEE
Confidence 123566788899999999999999 89999999999999999988632 11111124566889999999
Q ss_pred EC--CCEEEEEeCCCcEEEEcCC
Q 001391 316 LT--DSFIITAGEDCTCRVWGSD 336 (1088)
Q Consensus 316 ~~--~~~l~sg~~Dg~i~vWd~~ 336 (1088)
|+ +.++++|+.||.|++|++.
T Consensus 262 ~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 262 WSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp ECTTTCCEEEECSSSCEECCBCC
T ss_pred EcCCCCEEEEEcCCCEEEEEecC
Confidence 98 6799999999999999994
No 117
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.92 E-value=7.4e-23 Score=240.06 Aligned_cols=273 Identities=12% Similarity=0.048 Sum_probs=214.5
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEe-----eeCCcceEEEEecccccccCCCccceeeEE
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQ-----VFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~-----~~~~~~V~~i~~s~~~~~~~~d~~~~~~~l 91 (1088)
..+.+++|+ |+ +.+++++. ++.|++||+.+++.+..+. .|.+ .|.+++|+ +++ .++
T Consensus 123 ~~~~~~~~s--~~----~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~-~v~~~~~~-------~~~----~~~ 184 (433)
T 3bws_A 123 FQPKSVRFI--DN----TRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLG-FVETISIP-------EHN----ELW 184 (433)
T ss_dssp SCBCCCEES--SS----SEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCC-EEEEEEEG-------GGT----EEE
T ss_pred CCceEEEEe--CC----CeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCC-ceeEEEEc-------CCC----EEE
Confidence 346689999 87 77777776 5899999999998886433 3333 79999998 676 555
Q ss_pred EEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEE-EEcCCcEEEEEcCCCce
Q 001391 92 ALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI-GCSDNSIRVWDISNSSI 169 (1088)
Q Consensus 92 a~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~las-gs~Dg~V~iWd~~~~~~ 169 (1088)
++.+ |+.|++||++. .+.+..+..|...+.+++|+| +++.+++ ++.|+.|++||+.+++.
T Consensus 185 ~s~~~d~~v~~~d~~~---------------~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~i~~~d~~~~~~ 246 (433)
T 3bws_A 185 VSQMQANAVHVFDLKT---------------LAYKATVDLTGKWSKILLYDP---IRDLVYCSNWISEDISVIDRKTKLE 246 (433)
T ss_dssp EEEGGGTEEEEEETTT---------------CCEEEEEECSSSSEEEEEEET---TTTEEEEEETTTTEEEEEETTTTEE
T ss_pred EEECCCCEEEEEECCC---------------ceEEEEEcCCCCCeeEEEEcC---CCCEEEEEecCCCcEEEEECCCCcE
Confidence 5554 89999999874 345667778999999999999 9987754 45799999999999988
Q ss_pred EEEeccCCceeEEEEeeecCCCCCcEEEEEe--------cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecc
Q 001391 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGT--------IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1088)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~--------~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 241 (1088)
+..+..+.. ...+++ ++++..+++++ .||.|++||+.
T Consensus 247 ~~~~~~~~~--~~~~~~---~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~------------------------------ 291 (433)
T 3bws_A 247 IRKTDKIGL--PRGLLL---SKDGKELYIAQFSASNQESGGGRLGIYSMD------------------------------ 291 (433)
T ss_dssp EEECCCCSE--EEEEEE---CTTSSEEEEEEEESCTTCSCCEEEEEEETT------------------------------
T ss_pred EEEecCCCC--ceEEEE---cCCCCEEEEEECCCCccccCCCeEEEEECC------------------------------
Confidence 877765433 455655 67888888877 48899999998
Q ss_pred cccceeeeEEEeCCCCCEEEEEEcCCCCEE-EEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--C
Q 001391 242 QQHTAVNLFRLVGHEGSIFRIEWSSCGSKL-VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--D 318 (1088)
Q Consensus 242 ~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l-~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~ 318 (1088)
+++.+..+ .|...+.+++|+|+++.+ ++++.|+.|++||+.+++ .+ ....+...+.+++|+ +
T Consensus 292 ---~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~--------~~---~~~~~~~~~~~~~~s~dg 356 (433)
T 3bws_A 292 ---KEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK--------VQ---KSIPVFDKPNTIALSPDG 356 (433)
T ss_dssp ---TTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE--------EE---EEEECSSSEEEEEECTTS
T ss_pred ---CCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc--------EE---EEecCCCCCCeEEEcCCC
Confidence 44444433 566789999999999755 667899999999998753 22 223467789999998 5
Q ss_pred CEEEEEeC---------------CCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeC-CCCEEEEEcC
Q 001391 319 SFIITAGE---------------DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF-DSAIKVHQFQ 378 (1088)
Q Consensus 319 ~~l~sg~~---------------Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~-Dg~I~iwd~~ 378 (1088)
.++++++. ||.|++||. +++.+..+..+. .+.+++|+|++++|++++. |+.|++|+++
T Consensus 357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGN--QPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSS--SEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred CEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCC--CCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 67877776 579999999 778787777643 5999999999999988875 9999999985
No 118
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.92 E-value=1.9e-23 Score=241.92 Aligned_cols=315 Identities=14% Similarity=0.116 Sum_probs=196.1
Q ss_pred CCEEEEEeCCeEEEEECCC-------CeeEEE-EeeeCCcceEEEEeccccc-------------ccCCCccceeeEEEE
Q 001391 35 LPFLLAGSGSQVLLYDLEA-------GTLIRP-FQVFHGIRLHGISCNFINC-------------TEGSVSTRVTFEVAL 93 (1088)
Q Consensus 35 ~~~laag~d~~I~vwd~~t-------g~~~~~-~~~~~~~~V~~i~~s~~~~-------------~~~~d~~~~~~~la~ 93 (1088)
..++++|.++.|++|+... +..... .....+.++..+.+++... ...+++ .++++
T Consensus 31 ~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~las 106 (393)
T 4gq1_A 31 SNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYS----LFLAC 106 (393)
T ss_dssp TTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEE----EEEEE
T ss_pred CCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCC----CEEEE
Confidence 5688888899999998632 111111 1122334566776654310 001222 44555
Q ss_pred -ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEeccc-----CCCCEEEEEEcCCcEEEEEcCCC
Q 001391 94 -FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC-----NGNRSLAIGCSDNSIRVWDISNS 167 (1088)
Q Consensus 94 -~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~-----~d~~~lasgs~Dg~V~iWd~~~~ 167 (1088)
+.|++|+|||+.... ......+..+.+|.++|++++|+|.. .|+++||||+.|++|+|||+.++
T Consensus 107 ~~~d~~v~lw~~~~~~----------~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~ 176 (393)
T 4gq1_A 107 VCQDNTVRLIITKNET----------IITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE 176 (393)
T ss_dssp EETTSCEEEEEEETTE----------EEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred EeCCCcEEEEECCCCc----------cceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence 459999999998643 01134566789999999999999732 26789999999999999999988
Q ss_pred ceEEEeccCCceeEEEEeeecCCCCC-cEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccce
Q 001391 168 SIILEVHSPERCLLYSMKLWGDNLEA-LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (1088)
Q Consensus 168 ~~~~~~~~~~~~~~~s~~~~~~s~~~-~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 246 (1088)
..+..+..+.. .+.+++|+ |++ .+|++|+.||+|++||+.+.+........ ... .....+..... ..
T Consensus 177 ~~~~~~~~~~~-~v~~v~~~---p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~----~~~--~~~~~~s~~~~--~~ 244 (393)
T 4gq1_A 177 GPILAGYPLSS-PGISVQFR---PSNPNQLIVGERNGNIRIFDWTLNLSAEENSQT----ELV--KNPWLLTLNTL--PL 244 (393)
T ss_dssp EEEEEEEECSS-CEEEEEEE---TTEEEEEEEEETTSEEEEEETTCCC--------------C--SCCCSEEEESG--GG
T ss_pred ceeeeecCCCC-CcEEEEEC---CCCCceEEecCCCCEEEEEECCCCccccccccc----CCc--ccceEEecccc--cc
Confidence 77766665544 35677774 544 58999999999999999854432211100 000 00001111000 11
Q ss_pred eeeEEEeCCCCCEEEEEEc-CCCCEEEEEECCCcEEEEEcCCCcccCCCCc-----ee--eec--eeeeccCcceEEEEE
Q 001391 247 VNLFRLVGHEGSIFRIEWS-SCGSKLVSVSDDRSARIWEVRAEYWKDSDSI-----EE--VGS--SVLYGHNARVWDCCL 316 (1088)
Q Consensus 247 ~~~~~~~gh~~~V~~v~~s-p~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~-----~~--i~~--~~~~~h~~~I~~v~~ 316 (1088)
.......+|...|.++.|+ |+++.+++++.|+++++||+...+....... .. +.+ .....+...+ .+.+
T Consensus 245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 323 (393)
T 4gq1_A 245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLL-GACP 323 (393)
T ss_dssp C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSS-CCEE
T ss_pred eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcce-eEEE
Confidence 2223456899999999986 7999999999999999999987543100000 00 000 0111111122 2233
Q ss_pred C---C-CEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 317 T---D-SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 317 ~---~-~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
. + .++++|+.||+|++||. +++....+..|.. +|++++|+|||++||+++.|| +.+|.+.
T Consensus 324 ~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~-~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 324 HPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM-PIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS-CEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred ccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC-cEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 3 2 36778889999999999 7788888888887 799999999999999998776 6677663
No 119
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.92 E-value=1.4e-22 Score=231.15 Aligned_cols=315 Identities=14% Similarity=0.083 Sum_probs=198.9
Q ss_pred EEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeee
Q 001391 48 LYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQS 127 (1088)
Q Consensus 48 vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~ 127 (1088)
||++.+.+.+..+..|.. .|.+++|+ ||| .+|+++++..++||+++.. +....
T Consensus 3 i~s~~~~~~~~~~~~h~~-~V~~v~fs-------~dg----~~la~g~~~~~~iw~~~~~---------------~~~~~ 55 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSN-PVTDYEFN-------QDQ----SCLILSTLKSFEIYNVHPV---------------AHIMS 55 (355)
T ss_dssp ----------------CC-CCCEEEEC-------TTS----SEEEEECSSEEEEEEETTE---------------EEEEE
T ss_pred cccccccCCccccccCCC-ceEEEEEC-------CCC----CEEEEEcCCEEEEEecCCc---------------ceeee
Confidence 567777777777777665 79999999 888 7888888888999998742 22222
Q ss_pred ccCCCCcEEEEEEecccCCCCEE-EEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEE
Q 001391 128 LPRLSHWVFDVCFLKVCNGNRSL-AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEII 206 (1088)
Q Consensus 128 l~~h~~~I~~v~f~p~~~d~~~l-asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~ 206 (1088)
. +...+..+++.+ +++.+ ++|+.|++|++||+.+++.+..+..+. .+.++.+ +++ .++++ .++.|+
T Consensus 56 ~--~~~~~~~~~~~~---~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~--~v~~v~~---~~~--~~~~~-~~~~i~ 122 (355)
T 3vu4_A 56 Q--EMRHLSKVRMLH---RTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDA--PVKDLFL---SRE--FIVVS-YGDVIS 122 (355)
T ss_dssp E--ECSCCCEEEECT---TSSEEEEECSSTTEEEEEETTTTEEEEEEECSS--CEEEEEE---CSS--EEEEE-ETTEEE
T ss_pred e--ecCCeEEEEEcC---CCCEEEEEECCccEEEEEECCCCcEEEEEECCC--ceEEEEE---cCC--EEEEE-EcCEEE
Confidence 2 122478888988 77766 567788999999999999988876443 4566665 333 33333 478999
Q ss_pred EEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEE--EECCCcEEEEE
Q 001391 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS--VSDDRSARIWE 284 (1088)
Q Consensus 207 vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s--~s~Dg~v~iWd 284 (1088)
+||+.+. .+.+..+.. ....+++++ .+++. ++.||.|++||
T Consensus 123 i~d~~~~--------------------------------~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd 165 (355)
T 3vu4_A 123 VFKFGNP--------------------------------WKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITK 165 (355)
T ss_dssp EEESSTT--------------------------------CCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEE
T ss_pred EEECCCC--------------------------------ceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEE
Confidence 9999822 022222222 333455666 56665 58899999999
Q ss_pred cCCCcccCCCC-------cee-eeceeeeccCcceEEEEEC--CCEEEEEeCCCc-EEEEcC-CCceeEEEc-c-cCCCC
Q 001391 285 VRAEYWKDSDS-------IEE-VGSSVLYGHNARVWDCCLT--DSFIITAGEDCT-CRVWGS-DGKQLKMIK-E-HIGRG 350 (1088)
Q Consensus 285 ~~~~~~~~~~~-------~~~-i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~-i~vWd~-~~~~~~~~~-~-h~~~~ 350 (1088)
+.++....... ..+ + ..+.+|...|++++|+ +.+|++|+.|++ |++||+ +++++..+. + |.+ +
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~p~~--~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~-~ 242 (355)
T 3vu4_A 166 LQSSGSATTQDQGVQQKAILGKG--VLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRA-D 242 (355)
T ss_dssp CCC------------------CC--EEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCS-C
T ss_pred CCCCCccccccccccccccCccc--EEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCC-c
Confidence 98754100000 011 3 3788999999999998 689999999998 999999 789999998 5 777 7
Q ss_pred eEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCC---cccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEe
Q 001391 351 IWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPG---SLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHL 427 (1088)
Q Consensus 351 V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~ 427 (1088)
|++++|+|++++|++++.|++|++||+...... .+........+...-.+.....+ .........++|
T Consensus 243 v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~a~ 313 (355)
T 3vu4_A 243 VVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLS---------VDKHVRGCKIAW 313 (355)
T ss_dssp EEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECC---------CCTTCCCCEEEE
T ss_pred EEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEec---------cCCCCCceEEEE
Confidence 999999999999999999999999999543111 11110000000000000011111 112223467899
Q ss_pred ccCC-eEEEEecCCeEEEEEeccCC
Q 001391 428 TSED-TLYIATNHGYLYHTKLCDMD 451 (1088)
Q Consensus 428 s~~~-~ll~~t~~g~i~~~~~~~~~ 451 (1088)
++++ .+++++.+|.+..+.+....
T Consensus 314 ~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 314 ISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp SSSSEEEEEETTTTEEEEEEEEEET
T ss_pred eCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 9998 45566778888877665443
No 120
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.4e-23 Score=261.73 Aligned_cols=253 Identities=17% Similarity=0.232 Sum_probs=201.2
Q ss_pred EEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEE
Q 001391 58 RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFD 137 (1088)
Q Consensus 58 ~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~ 137 (1088)
..+.+|.+ .|.+++|+ |+++ .+++++.|++|+||++.... .+....+.+|.+.|++
T Consensus 3 ~~l~gH~~-~V~~l~~s-------~dg~---~latg~~dg~I~vwd~~~~~-------------~~~~~~l~~h~~~V~~ 58 (753)
T 3jro_A 3 VIANAHNE-LIHDAVLD-------YYGK---RLATCSSDKTIKIFEVEGET-------------HKLIDTLTGHEGPVWR 58 (753)
T ss_dssp -----CCC-CEEEECCC-------SSSC---CEEEEETTTEEEEEEEETTE-------------EEEEEEECCCSSCEEE
T ss_pred eecccCcc-eeEEEEEC-------CCCC---eEEEEECCCcEEEEecCCCC-------------CccceeccCCcCceEE
Confidence 45667666 79999999 7773 55555669999999998433 5678889999999999
Q ss_pred EEEecccCC--CCEEEEEEcCCcEEEEEcCCCc--eEEEeccCCceeEEEEeeecCCCC--CcEEEEEecCCeEEEEEec
Q 001391 138 VCFLKVCNG--NRSLAIGCSDNSIRVWDISNSS--IILEVHSPERCLLYSMKLWGDNLE--ALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 138 v~f~p~~~d--~~~lasgs~Dg~V~iWd~~~~~--~~~~~~~~~~~~~~s~~~~~~s~~--~~~l~sg~~dg~I~vwd~~ 211 (1088)
++|+| + +++|++|+.||+|++||+.+++ .+..+..+. ..+.++.+ +|+ +..+++|+.||.|++||+.
T Consensus 59 l~~s~---~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~-~~V~~v~~---sp~~~~~~l~sgs~dg~I~vwdl~ 131 (753)
T 3jro_A 59 VDWAH---PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS-ASVNSVQW---APHEYGPLLLVASSDGKVSVVEFK 131 (753)
T ss_dssp EEECC---TTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS-SCEEEEEE---CCGGGCSEEEEEETTSEEEEEECC
T ss_pred EEecC---CCCCCEEEEEeCCCeEEEEECCCCcccccccccCCC-CCeEEEEE---CCCCCCCEEEEEeCCCcEEEEEee
Confidence 99998 6 8999999999999999999886 455554443 34667776 566 8899999999999999998
Q ss_pred cCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcC-------------CCCEEEEEECCC
Q 001391 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-------------CGSKLVSVSDDR 278 (1088)
Q Consensus 212 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp-------------~g~~l~s~s~Dg 278 (1088)
+. .......+.+|...|.+++|+| ++.++++++.||
T Consensus 132 ~~-------------------------------~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg 180 (753)
T 3jro_A 132 EN-------------------------------GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 180 (753)
T ss_dssp SS-------------------------------SCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTS
T ss_pred cC-------------------------------CCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCC
Confidence 21 1234456789999999999999 589999999999
Q ss_pred cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-----CCEEEEEeCCCcEEEEcC-CCc-----eeEEEcccC
Q 001391 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-----DSFIITAGEDCTCRVWGS-DGK-----QLKMIKEHI 347 (1088)
Q Consensus 279 ~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-----~~~l~sg~~Dg~i~vWd~-~~~-----~~~~~~~h~ 347 (1088)
.|++||+.++.. ..... ..+.+|...|.+++|+ +.+|++++.||+|++||+ .++ .+.....|.
T Consensus 181 ~I~iwd~~~~~~----~~~~~--~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~ 254 (753)
T 3jro_A 181 LVKIWKYNSDAQ----TYVLE--STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP 254 (753)
T ss_dssp CEEEEEEETTTT----EEEEE--EEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCS
T ss_pred eEEEEeccCCcc----cceee--eeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCC
Confidence 999999987532 01223 2778999999999998 358999999999999999 332 223334566
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 348 GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 348 ~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+ .|++++|+|++++|++|+.||.|++|++..
T Consensus 255 ~-~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 255 D-VLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp S-CCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred C-ceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 6 799999999999999999999999999863
No 121
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.6e-23 Score=234.83 Aligned_cols=272 Identities=8% Similarity=-0.040 Sum_probs=198.0
Q ss_pred CCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCC
Q 001391 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (1088)
Q Consensus 35 ~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~ 113 (1088)
+.+|++|+ |++|++||+.+++.+..+.. ..|..+.++ | .+++++.|++|++|+...... .
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~---~~v~~~~~~-------~------~~~s~s~D~~i~~w~~~~~~~---~ 108 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKTITTITT---PNPRTGGEH-------P------AIISRGPCNRLLLLYPGNQIT---I 108 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSCEEEEEE---ECCCTTCCC-------C------SEEEECSTTEEEEEETTTEEE---E
T ss_pred CCEEEEECCCCcEEEEECCCCcEEEEEec---CCceeeeeC-------C------ceEEecCCCeEEEEEccCceE---E
Confidence 67888887 89999999999999888872 257777777 4 245555689999998763110 0
Q ss_pred CCCccccccceeee-ccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCC
Q 001391 114 YQPETCVNLSLVQS-LPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192 (1088)
Q Consensus 114 ~~~~~~~~~~~~~~-l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~ 192 (1088)
+ .....+.+.. ..+|.+.|.+++|+|. .+++++++|+.|++|++||+.+++.......+....+.++++ +|+
T Consensus 109 ~---~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~---~pd 181 (343)
T 3lrv_A 109 L---DSKTNKVLREIEVDSANEIIYMYGHNE-VNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVL---HKD 181 (343)
T ss_dssp E---ETTTCCEEEEEECCCSSCEEEEECCC----CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEE---CTT
T ss_pred e---ecCCcceeEEeecCCCCCEEEEEcCCC-CCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEE---CCC
Confidence 0 0001222333 3478889999999872 257899999999999999999998876665554444666766 688
Q ss_pred CcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeee-EEEeC-CCCCEEEEEEcCCCCE
Q 001391 193 ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL-FRLVG-HEGSIFRIEWSSCGSK 270 (1088)
Q Consensus 193 ~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~g-h~~~V~~v~~sp~g~~ 270 (1088)
+.+|++|+.||.|++||++ ++..+ ..+.+ |.+.|.+++|+|++.+
T Consensus 182 g~~lasg~~dg~i~iwd~~---------------------------------~~~~~~~~~~~~h~~~v~~l~fs~~g~~ 228 (343)
T 3lrv_A 182 SLLLALYSPDGILDVYNLS---------------------------------SPDQASSRFPVDEEAKIKEVKFADNGYW 228 (343)
T ss_dssp SCEEEEECTTSCEEEEESS---------------------------------CTTSCCEECCCCTTSCEEEEEECTTSSE
T ss_pred CCEEEEEcCCCEEEEEECC---------------------------------CCCCCccEEeccCCCCEEEEEEeCCCCE
Confidence 9999999999999999998 44444 56777 9999999999999999
Q ss_pred EEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcce--EEEEEC--CCEEEEEeC-CCcEEEEcC-CCceeEEEc
Q 001391 271 LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV--WDCCLT--DSFIITAGE-DCTCRVWGS-DGKQLKMIK 344 (1088)
Q Consensus 271 l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I--~~v~~~--~~~l~sg~~-Dg~i~vWd~-~~~~~~~~~ 344 (1088)
|++++++ .|++||+++.+. ...+. .+..|...+ .+++|+ +.+|++++. |+.+++|++ .+......
T Consensus 229 l~s~~~~-~v~iwd~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~- 299 (343)
T 3lrv_A 229 MVVECDQ-TVVCFDLRKDVG-----TLAYP--TYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK- 299 (343)
T ss_dssp EEEEESS-BEEEEETTSSTT-----CBSSC--CCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-
T ss_pred EEEEeCC-eEEEEEcCCCCc-----ceeec--ccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-
Confidence 9999955 999999998644 22222 222233444 368998 689999988 999999998 33322222
Q ss_pred ccCCCCeEEEEEcC---CCCEEEEEeCCCCEEEEEcC
Q 001391 345 EHIGRGIWRCLYDS---LSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 345 ~h~~~~V~~l~~~~---dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
. ++..++|.+ +...+++++.||.+.++-..
T Consensus 300 ---~-~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 300 ---D-EESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp ---E-EEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred ---c-CceeEecCccccccceeEEEecCCceEEEEec
Confidence 2 577888888 88899999999999988653
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.91 E-value=1.7e-21 Score=225.04 Aligned_cols=261 Identities=11% Similarity=0.047 Sum_probs=206.5
Q ss_pred CEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCC
Q 001391 36 PFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQ 113 (1088)
Q Consensus 36 ~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~ 113 (1088)
.++++++ ++.|++||+.+++++..+..+. .+.+++|+ |+++ .++++. .++.|++||+..
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s-------~dg~---~l~~~~~~d~~i~v~d~~~------- 63 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS--NPMGAVIS-------PDGT---KVYVANAHSNDVSIIDTAT------- 63 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS--SEEEEEEC-------TTSS---EEEEEEGGGTEEEEEETTT-------
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC--CcceEEEC-------CCCC---EEEEECCCCCeEEEEECCC-------
Confidence 4666666 7999999999999999888754 48999999 7773 444555 589999999874
Q ss_pred CCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEE-EcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCC
Q 001391 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192 (1088)
Q Consensus 114 ~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg-s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~ 192 (1088)
.+.+..+..+. .|.+++|+| ++++|+.+ +.|+.|++||+.+++.+..+..+.. ..++++ +++
T Consensus 64 --------~~~~~~~~~~~-~v~~~~~sp---dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~~---s~d 126 (391)
T 1l0q_A 64 --------NNVIATVPAGS-SPQGVAVSP---DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS--PLGLAL---SPD 126 (391)
T ss_dssp --------TEEEEEEECSS-SEEEEEECT---TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS--EEEEEE---CTT
T ss_pred --------CeEEEEEECCC-CccceEECC---CCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCC--cceEEE---CCC
Confidence 34555555554 899999999 99977554 4679999999999988877765543 456665 577
Q ss_pred CcEE-EEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEE
Q 001391 193 ALRI-ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (1088)
Q Consensus 193 ~~~l-~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l 271 (1088)
+..+ ++++.++.|++||+. +++.+..+..| ..+.+++|+|+++++
T Consensus 127 g~~l~~~~~~~~~v~~~d~~---------------------------------~~~~~~~~~~~-~~~~~~~~~~dg~~l 172 (391)
T 1l0q_A 127 GKKLYVTNNGDKTVSVINTV---------------------------------TKAVINTVSVG-RSPKGIAVTPDGTKV 172 (391)
T ss_dssp SSEEEEEETTTTEEEEEETT---------------------------------TTEEEEEEECC-SSEEEEEECTTSSEE
T ss_pred CCEEEEEeCCCCEEEEEECC---------------------------------CCcEEEEEecC-CCcceEEECCCCCEE
Confidence 8766 788889999999998 56666666665 457999999999987
Q ss_pred -EEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEe---CCCcEEEEcC-CCceeEEEc
Q 001391 272 -VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG---EDCTCRVWGS-DGKQLKMIK 344 (1088)
Q Consensus 272 -~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~---~Dg~i~vWd~-~~~~~~~~~ 344 (1088)
++++.|+.|++||+.+++. + ....+...+.+++|+ +.++++++ .++.|++||+ +++.+..+.
T Consensus 173 ~~~~~~~~~v~~~d~~~~~~--------~---~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~ 241 (391)
T 1l0q_A 173 YVANFDSMSISVIDTVTNSV--------I---DTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP 241 (391)
T ss_dssp EEEETTTTEEEEEETTTTEE--------E---EEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCeE--------E---EEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEe
Confidence 6778899999999988532 2 233456678999998 56788777 6899999999 677888887
Q ss_pred ccCCCCeEEEEEcCCCCEE-EEEeCCCCEEEEEcCC
Q 001391 345 EHIGRGIWRCLYDSLSSLL-VTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 345 ~h~~~~V~~l~~~~dg~~l-~tg~~Dg~I~iwd~~~ 379 (1088)
.|. .+.+++|+|++++| ++++.|+.|++||+..
T Consensus 242 ~~~--~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 242 VGP--DPAGIAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp CCS--SEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred cCC--CccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 765 48899999999877 6778899999999954
No 123
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.91 E-value=4.1e-21 Score=221.87 Aligned_cols=261 Identities=8% Similarity=0.034 Sum_probs=202.5
Q ss_pred CCCCCceEEecCCCce------eeeeEEEEEeccCCCCCCCCEE-EEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEE
Q 001391 1 MGKKDLSEWRLDVGQY------LGEISALCFVHLPSHLSSLPFL-LAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~~------~~~V~~v~fs~~pd~~~~~~~l-aag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~ 72 (1088)
+.|+.|++||+.+++. ...+.+++|+ |+ +++| +++. ++.|++||+.+++++..+..+. .+.+++
T Consensus 9 ~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s--~d----g~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~--~v~~~~ 80 (391)
T 1l0q_A 9 SESDNISVIDVTSNKVTATIPVGSNPMGAVIS--PD----GTKVYVANAHSNDVSIIDTATNNVIATVPAGS--SPQGVA 80 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECSSSEEEEEEC--TT----SSEEEEEEGGGTEEEEEETTTTEEEEEEECSS--SEEEEE
T ss_pred CCCCEEEEEECCCCeEEEEeecCCCcceEEEC--CC----CCEEEEECCCCCeEEEEECCCCeEEEEEECCC--CccceE
Confidence 4689999999999882 2458899999 99 7776 5554 7999999999999999888654 699999
Q ss_pred ecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEE-
Q 001391 73 CNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL- 150 (1088)
Q Consensus 73 ~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~l- 150 (1088)
|+ |+++ .++++.. ++.|++||+... +.+..+.. ...+.+++|+| +++.|
T Consensus 81 ~s-------pdg~---~l~~~~~~~~~v~v~d~~~~---------------~~~~~~~~-~~~~~~~~~s~---dg~~l~ 131 (391)
T 1l0q_A 81 VS-------PDGK---QVYVTNMASSTLSVIDTTSN---------------TVAGTVKT-GKSPLGLALSP---DGKKLY 131 (391)
T ss_dssp EC-------TTSS---EEEEEETTTTEEEEEETTTT---------------EEEEEEEC-SSSEEEEEECT---TSSEEE
T ss_pred EC-------CCCC---EEEEEECCCCEEEEEECCCC---------------eEEEEEeC-CCCcceEEECC---CCCEEE
Confidence 99 7773 4445554 699999999853 34444444 35689999999 99877
Q ss_pred EEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEE-EEEecCCeEEEEEeccCccccCCCCCCCccCCC
Q 001391 151 AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRI-ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (1088)
Q Consensus 151 asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l-~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~ 229 (1088)
++++.|+.|++||+.+++.+..+..+.. ...+.+ ++++..+ ++++.++.|++||+.
T Consensus 132 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~---~~dg~~l~~~~~~~~~v~~~d~~------------------ 188 (391)
T 1l0q_A 132 VTNNGDKTVSVINTVTKAVINTVSVGRS--PKGIAV---TPDGTKVYVANFDSMSISVIDTV------------------ 188 (391)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCSS--EEEEEE---CTTSSEEEEEETTTTEEEEEETT------------------
T ss_pred EEeCCCCEEEEEECCCCcEEEEEecCCC--cceEEE---CCCCCEEEEEeCCCCEEEEEECC------------------
Confidence 6788899999999999988887765543 345555 5777766 677889999999998
Q ss_pred CCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEE---CCCcEEEEEcCCCcccCCCCceeeeceeeec
Q 001391 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS---DDRSARIWEVRAEYWKDSDSIEEVGSSVLYG 306 (1088)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s---~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~ 306 (1088)
+.+.+..+. |...+.+++|+|+++++++++ .++.|++||+.+++ .+. .+..
T Consensus 189 ---------------~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~--------~~~--~~~~ 242 (391)
T 1l0q_A 189 ---------------TNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK--------ITA--RIPV 242 (391)
T ss_dssp ---------------TTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE--------EEE--EEEC
T ss_pred ---------------CCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe--------EEE--EEec
Confidence 455555554 566899999999999998888 78999999998753 332 3444
Q ss_pred cCcceEEEEEC--CCEE-EEEeCCCcEEEEcC-CCceeEEEcccCC
Q 001391 307 HNARVWDCCLT--DSFI-ITAGEDCTCRVWGS-DGKQLKMIKEHIG 348 (1088)
Q Consensus 307 h~~~I~~v~~~--~~~l-~sg~~Dg~i~vWd~-~~~~~~~~~~h~~ 348 (1088)
|. .+.+++|+ +.++ ++++.|+.|++||+ +++.+..+..|..
T Consensus 243 ~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~ 287 (391)
T 1l0q_A 243 GP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKN 287 (391)
T ss_dssp CS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred CC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcC
Confidence 43 57889998 4555 67789999999999 7888877766654
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.91 E-value=1.7e-22 Score=233.89 Aligned_cols=309 Identities=12% Similarity=0.050 Sum_probs=189.9
Q ss_pred ceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCcccc--------------ccceeeeccCCC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCV--------------NLSLVQSLPRLS 132 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~--------------~~~~~~~l~~h~ 132 (1088)
..+.+.|.. ..|++. .+++++.++.|++|+............+.... ..........|.
T Consensus 17 ~p~~~~w~~----~~~~~~---~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (393)
T 4gq1_A 17 RPYTTTWCS----QSPSCS---NLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHD 89 (393)
T ss_dssp CEEEEEECT----TSGGGT---TEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC---
T ss_pred CCeEEEEeC----CCCCCC---CEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccC
Confidence 456666641 113332 67787889999999876433111100000000 000011112233
Q ss_pred CcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEE-----eccCCceeEEEEeeec-----CCCCCcEEEEEecC
Q 001391 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE-----VHSPERCLLYSMKLWG-----DNLEALRIASGTIY 202 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~-----~~~~~~~~~~s~~~~~-----~s~~~~~l~sg~~d 202 (1088)
..+....+.+ ++.+||+|+.|++|+|||+.+++.... +.+| ...+.+++|.+ ...++.+||+|+.|
T Consensus 90 ~~~~~~~~~~---~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH-~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 90 GDGNVNSSPV---YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGH-HNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp -------CCE---EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSC-SSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred CCcceeecCC---CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCC-CCceEEEEEccccccccCCCCCEEEEEECC
Confidence 3333334444 667899999999999999998866432 2333 34577777743 22378999999999
Q ss_pred CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCC-EEEEEECCCcEE
Q 001391 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSAR 281 (1088)
Q Consensus 203 g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~-~l~s~s~Dg~v~ 281 (1088)
++|+|||+. ...++..+.+|...|.+++|+|++. +|++++.|++|+
T Consensus 166 ~tv~~Wd~~---------------------------------~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~ 212 (393)
T 4gq1_A 166 CTLIIWRLT---------------------------------DEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIR 212 (393)
T ss_dssp SEEEEEEEE---------------------------------TTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEE
T ss_pred CeEEEEECC---------------------------------CCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEE
Confidence 999999998 5667777888999999999999875 799999999999
Q ss_pred EEEcCCCcccCCCCce---------------eeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcC-CCceeEE
Q 001391 282 IWEVRAEYWKDSDSIE---------------EVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQLKM 342 (1088)
Q Consensus 282 iWd~~~~~~~~~~~~~---------------~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~-~~~~~~~ 342 (1088)
+||+.+++........ ........+|...+.++.|. +..|++++.|+++++||+ .++....
T Consensus 213 ~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~ 292 (393)
T 4gq1_A 213 IFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNE 292 (393)
T ss_dssp EEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------
T ss_pred EEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCce
Confidence 9999886542110000 00001345788889999986 689999999999999999 5555555
Q ss_pred EcccCCCCeEEEE------------------EcC--CCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEE
Q 001391 343 IKEHIGRGIWRCL------------------YDS--LSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFS 402 (1088)
Q Consensus 343 ~~~h~~~~V~~l~------------------~~~--dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1088)
+..|.. .+..+. ++| ++.++++|+.||+|++||......
T Consensus 293 l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~-------------------- 351 (393)
T 4gq1_A 293 ISDSTM-KLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDS-------------------- 351 (393)
T ss_dssp ------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTC--------------------
T ss_pred EeeecC-ccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcE--------------------
Confidence 555544 233333 322 334678888999999999853211
Q ss_pred eeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEecc
Q 001391 403 IKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCD 449 (1088)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~ 449 (1088)
......+...|++++|+|+|++|+...++.+..+++..
T Consensus 352 ---------~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~g 389 (393)
T 4gq1_A 352 ---------NSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLMG 389 (393)
T ss_dssp ---------CEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEGG
T ss_pred ---------EEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEeC
Confidence 11112345689999999999999988888888777654
No 125
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.90 E-value=2.4e-22 Score=235.64 Aligned_cols=257 Identities=18% Similarity=0.270 Sum_probs=198.0
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCC----------CeeEEEEeeeCCcceEEEEecccccccCCCc
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA----------GTLIRPFQVFHGIRLHGISCNFINCTEGSVS 84 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~t----------g~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~ 84 (1088)
|.++|++++|+ |+ .+.+|++|+ +|.|+|||+.+ .+.+..+..|.. .|.+++|+ |++
T Consensus 127 h~~~v~~l~~~--p~---~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~-------~~~ 193 (430)
T 2xyi_A 127 HEGEVNRARYM--PQ---NACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK-EGYGLSWN-------PNL 193 (430)
T ss_dssp ESSCCSEEEEE--TT---EEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS-CCCCEEEC-------TTS
T ss_pred CCCcEEEEEEC--CC---CCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCC-CeEEEEeC-------CCC
Confidence 67889999999 85 146888887 79999999987 677888888766 79999999 555
Q ss_pred cceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEE
Q 001391 85 TRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWD 163 (1088)
Q Consensus 85 ~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd 163 (1088)
+ .+|++++ |+.|++|++..... ..........+.+|...|.+++|+| .++.+|++++.|+.|++||
T Consensus 194 ~---~~l~s~~~dg~i~vwd~~~~~~--------~~~~~~~~~~~~~h~~~v~~v~~~p--~~~~~l~s~~~dg~i~i~d 260 (430)
T 2xyi_A 194 N---GYLLSASDDHTICLWDINATPK--------EHRVIDAKNIFTGHTAVVEDVAWHL--LHESLFGSVADDQKLMIWD 260 (430)
T ss_dssp T---TEEEEECTTSCEEEEETTSCCB--------GGGEEECSEEECCCSSCEEEEEECS--SCTTEEEEEETTSEEEEEE
T ss_pred C---CeEEEEeCCCeEEEEeCCCCCC--------CCceeccceeecCCCCCEeeeEEeC--CCCCEEEEEeCCCeEEEEE
Confidence 2 2555554 89999999985320 0001233566779999999999999 2457899999999999999
Q ss_pred cCCC---ceEEEeccCCceeEEEEeeecCCCCCc-EEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEe
Q 001391 164 ISNS---SIILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1088)
Q Consensus 164 ~~~~---~~~~~~~~~~~~~~~s~~~~~~s~~~~-~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 239 (1088)
+.++ +.+..+..+. ..+.++++ ++++. ++++|+.||.|++||++.
T Consensus 261 ~~~~~~~~~~~~~~~~~-~~v~~i~~---~p~~~~~l~tg~~dg~v~vwd~~~--------------------------- 309 (430)
T 2xyi_A 261 TRNNNTSKPSHTVDAHT-AEVNCLSF---NPYSEFILATGSADKTVALWDLRN--------------------------- 309 (430)
T ss_dssp TTCSCSSSCSEEEECCS-SCEEEEEE---CSSCTTEEEEEETTSEEEEEETTC---------------------------
T ss_pred CCCCCCCcceeEeecCC-CCeEEEEe---CCCCCCEEEEEeCCCeEEEEeCCC---------------------------
Confidence 9877 4555555443 34667776 45565 799999999999999981
Q ss_pred cccccceeeeEEEeCCCCCEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCcccCC------CCceeeeceeeeccCcceE
Q 001391 240 QDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDS------DSIEEVGSSVLYGHNARVW 312 (1088)
Q Consensus 240 ~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~-~l~s~s~Dg~v~iWd~~~~~~~~~------~~~~~i~~~~~~~h~~~I~ 312 (1088)
...++..+.+|...|.+++|+|+++ ++++++.|+.|++||+........ ...+.+ ....+|...|.
T Consensus 310 -----~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~ 382 (430)
T 2xyi_A 310 -----LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL--FIHGGHTAKIS 382 (430)
T ss_dssp -----TTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEE--EECCCCSSCEE
T ss_pred -----CCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceE--EEcCCCCCCce
Confidence 2456788889999999999999985 699999999999999987321000 001223 26778999999
Q ss_pred EEEEC--CC-EEEEEeCCCcEEEEcCC
Q 001391 313 DCCLT--DS-FIITAGEDCTCRVWGSD 336 (1088)
Q Consensus 313 ~v~~~--~~-~l~sg~~Dg~i~vWd~~ 336 (1088)
+++|+ +. +|++++.||.|++|++.
T Consensus 383 ~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 383 DFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp EEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred EEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 99998 34 89999999999999984
No 126
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=7.7e-22 Score=223.89 Aligned_cols=273 Identities=11% Similarity=0.031 Sum_probs=193.2
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCc
Q 001391 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (1088)
Q Consensus 146 d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~ 225 (1088)
++.+|++|+.||+|++||+.+++.+..+.. ..+.++.+ .|+ +++++.|++|++|+..
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~---~~v~~~~~---~~~---~~s~s~D~~i~~w~~~-------------- 103 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTITT---PNPRTGGE---HPA---IISRGPCNRLLLLYPG-------------- 103 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEEE---ECCCTTCC---CCS---EEEECSTTEEEEEETT--------------
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEec---CCceeeee---CCc---eEEecCCCeEEEEEcc--------------
Confidence 778999999999999999999988877751 11222332 344 9999999999999987
Q ss_pred cCCCCCCCCceeEecccccceeeeEEEe-CCCCCEEEEEEcC--CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeece
Q 001391 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLV-GHEGSIFRIEWSS--CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS 302 (1088)
Q Consensus 226 s~~~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~v~~sp--~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~ 302 (1088)
..+.+|+.. ....+..+. +|.+.|.+++|+| +++++++++.|++|++||+.+++. +. .
T Consensus 104 ---------~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--------~~-~ 164 (343)
T 3lrv_A 104 ---------NQITILDSK-TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ--------YI-V 164 (343)
T ss_dssp ---------TEEEEEETT-TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE--------EE-E
T ss_pred ---------CceEEeecC-CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE--------EE-E
Confidence 233344433 333344444 7889999999999 999999999999999999998532 22 1
Q ss_pred eeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCcee-EEEcc-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 303 VLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQL-KMIKE-HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 303 ~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~-~~~~~-h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
....|...|.+++|+ +.+|++|+.||.|++||+ +++.+ ..+.. |.+ +|.+++|+|++.+|++++ |+.|++||+
T Consensus 165 ~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~-~v~~l~fs~~g~~l~s~~-~~~v~iwd~ 242 (343)
T 3lrv_A 165 HSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEA-KIKEVKFADNGYWMVVEC-DQTVVCFDL 242 (343)
T ss_dssp ECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTS-CEEEEEECTTSSEEEEEE-SSBEEEEET
T ss_pred EecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCC-CEEEEEEeCCCCEEEEEe-CCeEEEEEc
Confidence 223456689999998 679999999999999999 66766 78888 887 799999999999999999 559999999
Q ss_pred CCC-CCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCce--EEEEeccCCeEEEE-ec-CCeEEEEEeccCCc
Q 001391 378 QAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYV--RCLHLTSEDTLYIA-TN-HGYLYHTKLCDMDS 452 (1088)
Q Consensus 378 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V--~~l~~s~~~~ll~~-t~-~g~i~~~~~~~~~~ 452 (1088)
+.. .+..+.... .+...+ .+++|+|++.++++ +. ++.+..|++... .
T Consensus 243 ~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~-~ 294 (343)
T 3lrv_A 243 RKDVGTLAYPTYT---------------------------IPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK-T 294 (343)
T ss_dssp TSSTTCBSSCCCB---------------------------C-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT-T
T ss_pred CCCCcceeecccc---------------------------cccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc-c
Confidence 642 222221100 011111 57999999987776 33 777876665332 2
Q ss_pred ceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEc
Q 001391 453 VNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVV 502 (1088)
Q Consensus 453 ~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~ 502 (1088)
..|.. .++..+.+.+. ..+...+++++.||.+.++-..
T Consensus 295 ~~~~~-------~~~~~~~~~~~-----~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 295 KNWTK-------DEESALCLQSD-----TADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp CSEEE-------EEEEECCC---------CCCCEEEEEEETTEEEEEEEC
T ss_pred cceEe-------cCceeEecCcc-----ccccceeEEEecCCceEEEEec
Confidence 33533 23444444331 1244788999999999887544
No 127
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.89 E-value=1.1e-20 Score=221.54 Aligned_cols=296 Identities=11% Similarity=0.038 Sum_probs=214.3
Q ss_pred eEEEEECCCC--eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccc
Q 001391 45 QVLLYDLEAG--TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVN 121 (1088)
Q Consensus 45 ~I~vwd~~tg--~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~ 121 (1088)
.|.+||..++ +.+..+..+. .+.+++|+ |++ .++++++ ++.|++||+..... ..
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~~--~~~~~~~s-------~~~----~~~~~~~~~~~i~~~d~~~g~~----------~~ 158 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTGF--QPKSVRFI-------DNT----RLAIPLLEDEGMDVLDINSGQT----------VR 158 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECSS--CBCCCEES-------SSS----EEEEEBTTSSSEEEEETTTCCE----------EE
T ss_pred EEEEECCCCCcceEEEEEcCCC--CceEEEEe-------CCC----eEEEEeCCCCeEEEEECCCCeE----------ee
Confidence 4444555445 5666666533 47799999 754 5555554 78899999885330 00
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEE-EEEe
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRI-ASGT 200 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l-~sg~ 200 (1088)
......+.+|...|.+++|+| ++.++++++.|+.|++||+.+++.+..+..+.. .+.++++ ++++..+ ++++
T Consensus 159 ~~~~~~~~~~~~~v~~~~~~~---~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~l~~~~~ 231 (433)
T 3bws_A 159 LSPPEKYKKKLGFVETISIPE---HNELWVSQMQANAVHVFDLKTLAYKATVDLTGK-WSKILLY---DPIRDLVYCSNW 231 (433)
T ss_dssp ECCCHHHHTTCCEEEEEEEGG---GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSS-SEEEEEE---ETTTTEEEEEET
T ss_pred ecCcccccccCCceeEEEEcC---CCEEEEEECCCCEEEEEECCCceEEEEEcCCCC-CeeEEEE---cCCCCEEEEEec
Confidence 011114568999999999999 999999999999999999999988888764433 3445555 4677766 4556
Q ss_pred cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEE-----
Q 001391 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS----- 275 (1088)
Q Consensus 201 ~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s----- 275 (1088)
.++.|++||+. +++.+..+..+ ..+.+++|+|+++++++++
T Consensus 232 ~~~~i~~~d~~---------------------------------~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~ 277 (433)
T 3bws_A 232 ISEDISVIDRK---------------------------------TKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASN 277 (433)
T ss_dssp TTTEEEEEETT---------------------------------TTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCT
T ss_pred CCCcEEEEECC---------------------------------CCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCc
Confidence 89999999998 55555555544 4599999999999999888
Q ss_pred ---CCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CC-EEEEEeCCCcEEEEcC-CCceeEEEcccCC
Q 001391 276 ---DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS-FIITAGEDCTCRVWGS-DGKQLKMIKEHIG 348 (1088)
Q Consensus 276 ---~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~-~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~ 348 (1088)
.|+.|++||+.+++. + ....|...+.+++|+ +. ++++++.|+.+++||+ +++.+..+. +..
T Consensus 278 ~~~~dg~i~~~d~~~~~~--------~---~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~ 345 (433)
T 3bws_A 278 QESGGGRLGIYSMDKEKL--------I---DTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFD 345 (433)
T ss_dssp TCSCCEEEEEEETTTTEE--------E---EEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSS
T ss_pred cccCCCeEEEEECCCCcE--------E---eeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCC
Confidence 588999999987532 2 334566688899998 33 5677799999999999 667776665 444
Q ss_pred CCeEEEEEcCCCCEEEEEeC---------------CCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCcccee
Q 001391 349 RGIWRCLYDSLSSLLVTAGF---------------DSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIR 413 (1088)
Q Consensus 349 ~~V~~l~~~~dg~~l~tg~~---------------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (1088)
.+.+++|+|++++|++++. ||.|++||+..... +..+
T Consensus 346 -~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~-----------------~~~~---------- 397 (433)
T 3bws_A 346 -KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV-----------------KEFW---------- 397 (433)
T ss_dssp -SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE-----------------EEEE----------
T ss_pred -CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE-----------------EEEe----------
Confidence 5999999999998888876 57999999853210 1011
Q ss_pred eccCCCCceEEEEeccCCeEEEE-e-cCCeEEEEEe
Q 001391 414 LTDSKSEYVRCLHLTSEDTLYIA-T-NHGYLYHTKL 447 (1088)
Q Consensus 414 ~~~~~~~~V~~l~~s~~~~ll~~-t-~~g~i~~~~~ 447 (1088)
.. ...+.+++|+|++++++. + .++.+..|++
T Consensus 398 --~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~ 430 (433)
T 3bws_A 398 --EA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRR 430 (433)
T ss_dssp --EC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred --cC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEe
Confidence 11 235899999999976654 4 3788886655
No 128
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.89 E-value=1.3e-21 Score=213.51 Aligned_cols=249 Identities=12% Similarity=0.131 Sum_probs=172.7
Q ss_pred CCceEEecCCC---c-------eeeeeEEEEEeccCCCCCCCCEEEEEeC--CeEEEEEC--C-C----CeeEEEEeeeC
Q 001391 4 KDLSEWRLDVG---Q-------YLGEISALCFVHLPSHLSSLPFLLAGSG--SQVLLYDL--E-A----GTLIRPFQVFH 64 (1088)
Q Consensus 4 ~~i~iWdl~~g---~-------~~~~V~~v~fs~~pd~~~~~~~laag~d--~~I~vwd~--~-t----g~~~~~~~~~~ 64 (1088)
.+|++|+..++ + +..+|..|.|+ || . ..++.++-+ ..-.|+-+ . . ++.+.. .++.
T Consensus 63 ~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~--~-~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s-~g~~ 136 (356)
T 2w18_A 63 DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPV--PD--V-YNLVCVALGNLEIREIRALFCSSDDESEKQVLLK-SGNI 136 (356)
T ss_dssp SEEEEEEESSSSBEEEEEEEECCSSCEEEECCC--TT--C-CSCEEEEECSSSEEEEEEECC------CCEEEEE-EEEE
T ss_pred ceEEEcccCCCccceeeEEEeccCceeEEEEEc--Cc--c-cceeeeeeccccccceEEEEECCCccccccEEEe-CCCe
Confidence 46999999998 3 44689999999 87 2 234433332 22222222 1 1 222222 2222
Q ss_pred CcceEEEEecccccccCCCccceeeEEEEEC---CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEe
Q 001391 65 GIRLHGISCNFINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFL 141 (1088)
Q Consensus 65 ~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g---d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~ 141 (1088)
.+|.++ +++ .++.+++ |+.|++|++... .+.+..+.+|...+..++|+
T Consensus 137 -~~v~~l----------~~g----~lv~ss~~g~d~~V~~~~~s~d--------------G~~~~s~~~~~~~v~~l~fs 187 (356)
T 2w18_A 137 -KAVLGL----------TKR----RLVSSSGTLSDQQVEVMTFAED--------------GGGKENQFLMPPEETILTFA 187 (356)
T ss_dssp -EEEEEE----------TTT----EEEEEESSSTTCEEEEEEECTT--------------SCEEEEEEECCCSSCEEEEE
T ss_pred -EEEEec----------CCC----cEEEecccCCCCcEEEEEECCC--------------CceeeeeccCCCceeeEEee
Confidence 234432 345 6777766 999999999753 36677888999999999999
Q ss_pred cccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCc--eeEEEEeeecCCCCCcEE------------EEEecCCeEEE
Q 001391 142 KVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPER--CLLYSMKLWGDNLEALRI------------ASGTIYNEIIV 207 (1088)
Q Consensus 142 p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~--~~~~s~~~~~~s~~~~~l------------~sg~~dg~I~v 207 (1088)
|.+.++.+|++|+.|++|+|||+.+++.+.++..+.. ..+.+++| +|++.++ ++|+.|++|++
T Consensus 188 ~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf---SpdG~~lvs~s~~~~~w~laSGs~D~tIkl 264 (356)
T 2w18_A 188 EVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY---SEMGLLFIVLSHPCAKESESLRSPVFQLIV 264 (356)
T ss_dssp EEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE---EETTEEEEEEC------------CCEEEEE
T ss_pred ccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE---CCCCCEEEEeccCCCcceeeccCCCcEEEE
Confidence 9666889999999999999999999999999875432 12333344 4667665 66888899999
Q ss_pred EEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE-----eCCCCCEEEEEEcCCCCEEEEEECCCcEEE
Q 001391 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-----VGHEGSIFRIEWSSCGSKLVSVSDDRSARI 282 (1088)
Q Consensus 208 wd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-----~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~i 282 (1088)
||.. +++.+..+ .+|.+.+.+..++ +.++++++.|++|+|
T Consensus 265 Wd~~---------------------------------tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkI 309 (356)
T 2w18_A 265 INPK---------------------------------TTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAI 309 (356)
T ss_dssp EETT---------------------------------TTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred EECC---------------------------------CCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEE
Confidence 9987 45554443 3777766555544 889999999999999
Q ss_pred EEcCCCcccCCCCceeeeceeeeccCcceE-EEEEC--CCEEEEEeCCCcEEEEcC
Q 001391 283 WEVRAEYWKDSDSIEEVGSSVLYGHNARVW-DCCLT--DSFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 283 Wd~~~~~~~~~~~~~~i~~~~~~~h~~~I~-~v~~~--~~~l~sg~~Dg~i~vWd~ 335 (1088)
||+.+++ .+. ++.+|...+. +++|+ +.+|++|+.|++|+|||+
T Consensus 310 WDl~tGk--------~l~--tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 310 WDLLLGQ--------CTA--LLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EETTTCS--------EEE--EECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EECCCCc--------EEE--EecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999964 443 7778887765 58998 579999999999999985
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.87 E-value=6.6e-20 Score=213.51 Aligned_cols=303 Identities=8% Similarity=0.048 Sum_probs=215.4
Q ss_pred eeEEEEEeccCCCCCCCCEEEEEe-----CC----eEEEEEC--CCCeeE--EEEeeeCCcceEEEEeccccc-------
Q 001391 19 EISALCFVHLPSHLSSLPFLLAGS-----GS----QVLLYDL--EAGTLI--RPFQVFHGIRLHGISCNFINC------- 78 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~laag~-----d~----~I~vwd~--~tg~~~--~~~~~~~~~~V~~i~~s~~~~------- 78 (1088)
.|...+|. +. +..++++|. +| +|++||+ .+++++ ..+.++.. .+..+++++...
T Consensus 64 ~~~~~~w~--~~---g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~g 137 (415)
T 2hqs_A 64 EVQPAAWS--AL---GIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQ-WLRYAGHTASDEVFEKLTG 137 (415)
T ss_dssp GCCHHHHH--TT---TCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGG-GHHHHHHHHHHHHHHHHHS
T ss_pred CcCHHHHH--hc---CCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChh-HHHHHHHHHHHHHHHHHcC
Confidence 44555566 54 235777775 46 8999999 999887 44776554 577776663100
Q ss_pred ccCCCccceeeEEEEECC------CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEE
Q 001391 79 TEGSVSTRVTFEVALFGE------KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (1088)
Q Consensus 79 ~~~~d~~~~~~~la~~gd------~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~las 152 (1088)
..++.+. .++.++.+ +.|++||++. .....+.+|...|.+++|+| +|+.|++
T Consensus 138 ~~~~~~~---~l~~~s~~~~~~~~~~i~i~d~~g----------------~~~~~l~~~~~~v~~~~~Sp---dg~~la~ 195 (415)
T 2hqs_A 138 IKGAFRT---RIAYVVQTNGGQFPYELRVSDYDG----------------YNQFVVHRSPQPLMSPAWSP---DGSKLAY 195 (415)
T ss_dssp SCCCTTC---EEEEEEECSSSSCCEEEEEEETTS----------------CSCEEEEEESSCEEEEEECT---TSSEEEE
T ss_pred CCCcCCC---EEEEEEecCCCCccceEEEEcCCC----------------CCCEEEeCCCCcceeeEEcC---CCCEEEE
Confidence 0011121 44444433 7999999873 23455667899999999999 9999999
Q ss_pred EEcCC---cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEE-EEecCCe--EEEEEeccCccccCCCCCCCcc
Q 001391 153 GCSDN---SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTIYNE--IIVWKVDWEHVAPLLNSPEGNH 226 (1088)
Q Consensus 153 gs~Dg---~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~-sg~~dg~--I~vwd~~~~~~~~~~~~~~~~s 226 (1088)
++.|+ .|++||+.+++... +..+. ..+.++++ +|++..|+ +++.++. |++||+.
T Consensus 196 ~s~~~~~~~i~~~d~~tg~~~~-l~~~~-~~~~~~~~---spdg~~la~~~~~~g~~~i~~~d~~--------------- 255 (415)
T 2hqs_A 196 VTFESGRSALVIQTLANGAVRQ-VASFP-RHNGAPAF---SPDGSKLAFALSKTGSLNLYVMDLA--------------- 255 (415)
T ss_dssp EECTTSSCEEEEEETTTCCEEE-EECCS-SCEEEEEE---CTTSSEEEEEECTTSSCEEEEEETT---------------
T ss_pred EEecCCCcEEEEEECCCCcEEE-eecCC-CcccCEEE---cCCCCEEEEEEecCCCceEEEEECC---------------
Confidence 99875 99999999987754 33332 23556665 78898777 6666654 8889987
Q ss_pred CCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC-CC--cEEEEEcCCCcccCCCCceeeecee
Q 001391 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DR--SARIWEVRAEYWKDSDSIEEVGSSV 303 (1088)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~-Dg--~v~iWd~~~~~~~~~~~~~~i~~~~ 303 (1088)
+++ ...+..|...+.+++|+|||++|++++. ++ .|++||+.+++. ..
T Consensus 256 ------------------~~~-~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-----------~~ 305 (415)
T 2hqs_A 256 ------------------SGQ-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-----------QR 305 (415)
T ss_dssp ------------------TCC-EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-----------EE
T ss_pred ------------------CCC-EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-----------EE
Confidence 333 3566788899999999999999998886 44 677778877532 14
Q ss_pred eeccCcceEEEEEC--CCEEEEEeCC---CcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCC---CEEEE
Q 001391 304 LYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS---AIKVH 375 (1088)
Q Consensus 304 ~~~h~~~I~~v~~~--~~~l~sg~~D---g~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg---~I~iw 375 (1088)
+..|...+.+++|+ +.+|++++.+ ..|++||+.+.....+..+. .+.+++|+|+|++|++++.|+ .|.+|
T Consensus 306 l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~--~~~~~~~spdg~~l~~~s~~~~~~~l~~~ 383 (415)
T 2hqs_A 306 ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF--LDETPSLAPNGTMVIYSSSQGMGSVLNLV 383 (415)
T ss_dssp CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS--SCEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred EecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC--CcCCeEEcCCCCEEEEEEcCCCccEEEEE
Confidence 45566788899998 5778877764 58999999544445666664 599999999999999988877 79999
Q ss_pred EcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCC
Q 001391 376 QFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED 431 (1088)
Q Consensus 376 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~ 431 (1088)
|+.+...+. +..+.+.|++++|+|..
T Consensus 384 d~~g~~~~~------------------------------l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 384 STDGRFKAR------------------------------LPATDGQVKFPAWSPYL 409 (415)
T ss_dssp ETTSCCEEE------------------------------CCCSSSEEEEEEECCCC
T ss_pred ECCCCcEEE------------------------------eeCCCCCCcCCcccccc
Confidence 986543322 23344678999999853
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.86 E-value=4.4e-19 Score=213.17 Aligned_cols=333 Identities=11% Similarity=0.059 Sum_probs=230.2
Q ss_pred EEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEE
Q 001391 24 CFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLF 102 (1088)
Q Consensus 24 ~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw 102 (1088)
+|+ |+ +.+++++. +++|.+||..+++++.++...+. +++++|+ |||+ .+++++.|++|++|
T Consensus 144 ~~~--p~----~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~s-------pdg~---~l~v~~~d~~V~v~ 205 (543)
T 1nir_A 144 DLD--LP----NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMS-------ASGR---YLLVIGRDARIDMI 205 (543)
T ss_dssp CCC--GG----GEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEEC-------TTSC---EEEEEETTSEEEEE
T ss_pred ccC--CC----CEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEEC-------CCCC---EEEEECCCCeEEEE
Confidence 377 77 77888877 69999999999999999985443 8999999 8884 56666668999999
Q ss_pred EeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccC-CCCEEEEEE-cCCcEEEEEcCCCceEEEeccCC---
Q 001391 103 ELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN-GNRSLAIGC-SDNSIRVWDISNSSIILEVHSPE--- 177 (1088)
Q Consensus 103 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~-d~~~lasgs-~Dg~V~iWd~~~~~~~~~~~~~~--- 177 (1088)
|+.... .+.+..+. +...+..++|+|... |+++|++++ .+++|.+||..+++.+..+..+.
T Consensus 206 D~~~~t-------------~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~ 271 (543)
T 1nir_A 206 DLWAKE-------------PTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV 271 (543)
T ss_dssp ETTSSS-------------CEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS
T ss_pred ECcCCC-------------CcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCccc
Confidence 993111 45566666 445689999986211 678888887 48999999999999988876421
Q ss_pred -------ceeEEEEeeecCCCC-CcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee-
Q 001391 178 -------RCLLYSMKLWGDNLE-ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN- 248 (1088)
Q Consensus 178 -------~~~~~s~~~~~~s~~-~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~- 248 (1088)
...+.++.+ +++ ..++++...++.|.+||.. ....
T Consensus 272 ~~~~~~~~~~v~~i~~---s~~~~~~~vs~~~~g~i~vvd~~---------------------------------~~~~l 315 (543)
T 1nir_A 272 DTQTYHPEPRVAAIIA---SHEHPEFIVNVKETGKVLLVNYK---------------------------------DIDNL 315 (543)
T ss_dssp SSCCEESCCCEEEEEE---CSSSSEEEEEETTTTEEEEEECT---------------------------------TSSSC
T ss_pred CccccccCCceEEEEE---CCCCCEEEEEECCCCeEEEEEec---------------------------------CCCcc
Confidence 113444444 454 4567778889999999997 2211
Q ss_pred -eEEEeCCCCCEEEEEEcCCCCEEEEE-ECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEE
Q 001391 249 -LFRLVGHEGSIFRIEWSSCGSKLVSV-SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA 324 (1088)
Q Consensus 249 -~~~~~gh~~~V~~v~~sp~g~~l~s~-s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg 324 (1088)
+..+ .+...+..++|+|+|++++++ ..+++|.+||..+++. ...+. .....|..+...+... +.+++++
T Consensus 316 ~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l-----~~~i~-~g~~ph~g~g~~~~~p~~g~~~~s~ 388 (543)
T 1nir_A 316 TVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRL-----SALVD-VGKTPHPGRGANFVHPKYGPVWSTS 388 (543)
T ss_dssp EEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEE-----EEEEE-CSSSBCCTTCEEEEETTTEEEEEEE
T ss_pred eeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeE-----EEeec-cCCCCCCCCCcccCCCCCccEEEec
Confidence 1233 356778899999999987655 4689999999998643 22121 0112366554444332 3466776
Q ss_pred e-CCCcEEEEcC-C-------CceeEEEcccCCCCeEEEEEcCCCCEEEEEe-------CCCCEEEEEcCCCCCCcccCC
Q 001391 325 G-EDCTCRVWGS-D-------GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG-------FDSAIKVHQFQAFLPGSLESH 388 (1088)
Q Consensus 325 ~-~Dg~i~vWd~-~-------~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~-------~Dg~I~iwd~~~~~~~~~~~~ 388 (1088)
. .|++|.+||. + .+.++++..|.+ ++..++++|++++|++++ .+++|.+||+.+....
T Consensus 389 ~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~-~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~----- 462 (543)
T 1nir_A 389 HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG-GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK----- 462 (543)
T ss_dssp BSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS-CCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC-----
T ss_pred cCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC-CceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC-----
Confidence 5 6899999999 5 688999999887 688999999999999987 2789999999643110
Q ss_pred ccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEe------cCCeEEEEEeccCCccee
Q 001391 389 PEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT------NHGYLYHTKLCDMDSVNW 455 (1088)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t------~~g~i~~~~~~~~~~~~~ 455 (1088)
.+.+.+. ....+..+...+..++|+|+|+.+..+ .++.|. +++..+.+.
T Consensus 463 ---------~~~~~v~------~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~---v~D~~t~~~ 517 (543)
T 1nir_A 463 ---------YQVLPIA------EWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALV---VVDDKTLKL 517 (543)
T ss_dssp ---------CEEECHH------HHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEE---EEETTTTEE
T ss_pred ---------eEEeech------hhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEE---EEECCCceE
Confidence 0011000 000012234578999999999665543 246676 456555553
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.85 E-value=3.7e-19 Score=213.81 Aligned_cols=299 Identities=10% Similarity=0.030 Sum_probs=216.7
Q ss_pred CCCCceEEecCCCceee------eeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEEC--CCCeeEEEEeeeCCcceEEEE
Q 001391 2 GKKDLSEWRLDVGQYLG------EISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDL--EAGTLIRPFQVFHGIRLHGIS 72 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~~~~------~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~--~tg~~~~~~~~~~~~~V~~i~ 72 (1088)
.|++|++||..+++... .+.+++|+ || +++|++++ +++|++||+ .+++++.++.. +..+.+++
T Consensus 157 ~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~s--pd----g~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~--g~~p~~va 228 (543)
T 1nir_A 157 DAGQIALVDGDSKKIVKVIDTGYAVHISRMS--AS----GRYLLVIGRDARIDMIDLWAKEPTKVAEIKI--GIEARSVE 228 (543)
T ss_dssp GGTEEEEEETTTCCEEEEEECSTTEEEEEEC--TT----SCEEEEEETTSEEEEEETTSSSCEEEEEEEC--CSEEEEEE
T ss_pred CCCeEEEEECCCceEEEEEecCcccceEEEC--CC----CCEEEEECCCCeEEEEECcCCCCcEEEEEec--CCCcceEE
Confidence 57899999999987322 37799999 99 89999988 799999999 89999998885 33589999
Q ss_pred ecccccccCC----CccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccC----------CCC-cEE
Q 001391 73 CNFINCTEGS----VSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR----------LSH-WVF 136 (1088)
Q Consensus 73 ~s~~~~~~~~----d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~----------h~~-~I~ 136 (1088)
|+ | ||+ .++++. .+++|.|||..+ +++++.+.. |.+ .+.
T Consensus 229 ~s-------p~~~~dg~---~l~v~~~~~~~v~v~D~~t---------------~~~~~~i~~~g~~~~~~~~~~~~~v~ 283 (543)
T 1nir_A 229 SS-------KFKGYEDR---YTIAGAYWPPQFAIMDGET---------------LEPKQIVSTRGMTVDTQTYHPEPRVA 283 (543)
T ss_dssp EC-------CSTTCTTT---EEEEEEEESSEEEEEETTT---------------CCEEEEEECCEECSSSCCEESCCCEE
T ss_pred eC-------CCcCCCCC---EEEEEEccCCeEEEEeccc---------------cccceeecccCcccCccccccCCceE
Confidence 99 7 873 343333 489999999874 333443332 333 899
Q ss_pred EEEEecccCCCC-EEEEEEcCCcEEEEEcCCCceEE--EeccCCceeEEEEeeecCCCCCcEEEE-EecCCeEEEEEecc
Q 001391 137 DVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIIL--EVHSPERCLLYSMKLWGDNLEALRIAS-GTIYNEIIVWKVDW 212 (1088)
Q Consensus 137 ~v~f~p~~~d~~-~lasgs~Dg~V~iWd~~~~~~~~--~~~~~~~~~~~s~~~~~~s~~~~~l~s-g~~dg~I~vwd~~~ 212 (1088)
++.++| ++. ++++...++.|.+||+.+.+.+. .+.. ......+.+ +|++.++++ +..+++|.+||..
T Consensus 284 ~i~~s~---~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~--~~~~~~~~~---spdg~~l~va~~~~~~v~v~D~~- 354 (543)
T 1nir_A 284 AIIASH---EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA--APFLHDGGW---DSSHRYFMTAANNSNKVAVIDSK- 354 (543)
T ss_dssp EEEECS---SSSEEEEEETTTTEEEEEECTTSSSCEEEEEEC--CSSCCCEEE---CTTSCEEEEEEGGGTEEEEEETT-
T ss_pred EEEECC---CCCEEEEEECCCCeEEEEEecCCCcceeEEecc--CcCccCceE---CCCCCEEEEEecCCCeEEEEECC-
Confidence 999999 765 56677789999999998866543 3321 222334444 688887655 4568999999998
Q ss_pred CccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC----CCCCEEEEEEcCC-CCEEEEEE-CCCcEEEEEcC
Q 001391 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG----HEGSIFRIEWSSC-GSKLVSVS-DDRSARIWEVR 286 (1088)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g----h~~~V~~v~~sp~-g~~l~s~s-~Dg~v~iWd~~ 286 (1088)
+++.+..+.. |.+....+ ++|+ +..++++. .|++|.+||+.
T Consensus 355 --------------------------------tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~ 401 (543)
T 1nir_A 355 --------------------------------DRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTD 401 (543)
T ss_dssp --------------------------------TTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECC
T ss_pred --------------------------------CCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeC
Confidence 5666666653 65544444 4677 56667765 68999999998
Q ss_pred CCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEe-------CCCcEEEEcC-CCcee-EEE--------cccC
Q 001391 287 AEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG-------EDCTCRVWGS-DGKQL-KMI--------KEHI 347 (1088)
Q Consensus 287 ~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~-------~Dg~i~vWd~-~~~~~-~~~--------~~h~ 347 (1088)
+.... ....+.++ ++.+|...+..++++ +.+|++++ .+++|+|||+ +++.. ..+ ..+.
T Consensus 402 ~~~~~-~~~~~~v~--~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~ 478 (543)
T 1nir_A 402 PKNHP-QYAWKKVA--ELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGA 478 (543)
T ss_dssp TTTCT-TTBTSEEE--EEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSC
T ss_pred CCCCc-hhcCeEEE--EEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCC
Confidence 73210 00124554 778888888899998 57888876 2789999999 66655 444 2344
Q ss_pred CCCeEEEEEcCCCCEEEEEe-----CCCCEEEEEcCC
Q 001391 348 GRGIWRCLYDSLSSLLVTAG-----FDSAIKVHQFQA 379 (1088)
Q Consensus 348 ~~~V~~l~~~~dg~~l~tg~-----~Dg~I~iwd~~~ 379 (1088)
. .++.+.|+|+|+.|+.+. .|+.|.+||..+
T Consensus 479 ~-~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t 514 (543)
T 1nir_A 479 K-RVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT 514 (543)
T ss_dssp C-EEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred C-ceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCC
Confidence 4 699999999999888662 479999999854
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.83 E-value=1.2e-18 Score=202.88 Aligned_cols=271 Identities=11% Similarity=-0.003 Sum_probs=194.5
Q ss_pred CceEEec--CCCceeee---------eEEEEEeccCC-----------CCCCCCEEEEEeC------CeEEEEECCCCee
Q 001391 5 DLSEWRL--DVGQYLGE---------ISALCFVHLPS-----------HLSSLPFLLAGSG------SQVLLYDLEAGTL 56 (1088)
Q Consensus 5 ~i~iWdl--~~g~~~~~---------V~~v~fs~~pd-----------~~~~~~~laag~d------~~I~vwd~~tg~~ 56 (1088)
+++|||+ .+++.... +..++++ +. ..-+.+++.++.+ ++|++||+.. ..
T Consensus 94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~ 170 (415)
T 2hqs_A 94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHT--ASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YN 170 (415)
T ss_dssp EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHH--HHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CS
T ss_pred EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHH--HHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CC
Confidence 8999999 88874322 2233333 20 0001344444443 6999999974 55
Q ss_pred EEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECC---CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCC
Q 001391 57 IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE---KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH 133 (1088)
Q Consensus 57 ~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd---~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 133 (1088)
+..+..+.. .|.+++|+ |||+ .++.++.+ ..|++||+.... . ..+..|..
T Consensus 171 ~~~l~~~~~-~v~~~~~S-------pdg~---~la~~s~~~~~~~i~~~d~~tg~---------------~-~~l~~~~~ 223 (415)
T 2hqs_A 171 QFVVHRSPQ-PLMSPAWS-------PDGS---KLAYVTFESGRSALVIQTLANGA---------------V-RQVASFPR 223 (415)
T ss_dssp CEEEEEESS-CEEEEEEC-------TTSS---EEEEEECTTSSCEEEEEETTTCC---------------E-EEEECCSS
T ss_pred CEEEeCCCC-cceeeEEc-------CCCC---EEEEEEecCCCcEEEEEECCCCc---------------E-EEeecCCC
Confidence 667777665 79999999 8883 44444445 499999998532 2 24557888
Q ss_pred cEEEEEEecccCCCCEEE-EEEcCCc--EEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEec-CC--eEEE
Q 001391 134 WVFDVCFLKVCNGNRSLA-IGCSDNS--IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI-YN--EIIV 207 (1088)
Q Consensus 134 ~I~~v~f~p~~~d~~~la-sgs~Dg~--V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~-dg--~I~v 207 (1088)
.+.+++|+| ||+.|+ +++.|+. |++||+.+++. ..+..+. ....++.+ +|++..|+.++. ++ .|.+
T Consensus 224 ~~~~~~~sp---dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~~---spdg~~l~~~s~~~g~~~i~~ 295 (415)
T 2hqs_A 224 HNGAPAFSP---DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGR-SNNTEPTW---FPDSQNLAFTSDQAGRPQVYK 295 (415)
T ss_dssp CEEEEEECT---TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCS-SCEEEEEE---CTTSSEEEEEECTTSSCEEEE
T ss_pred cccCEEEcC---CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCC-CcccceEE---CCCCCEEEEEECCCCCcEEEE
Confidence 999999999 999887 6666655 99999988876 3444333 34556665 788998887775 45 5666
Q ss_pred EEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC---CcEEEEE
Q 001391 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD---RSARIWE 284 (1088)
Q Consensus 208 wd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D---g~v~iWd 284 (1088)
||+. ++. ...+..|...+.+++|+|+|++|++++.+ ..|++||
T Consensus 296 ~d~~---------------------------------~~~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d 341 (415)
T 2hqs_A 296 VNIN---------------------------------GGA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQD 341 (415)
T ss_dssp EETT---------------------------------SSC-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEE
T ss_pred EECC---------------------------------CCC-EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEE
Confidence 6766 222 33455677889999999999999988764 5899999
Q ss_pred cCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCC---cEEEEcCCCceeEEEcccCCCCeEEEEEcCC
Q 001391 285 VRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC---TCRVWGSDGKQLKMIKEHIGRGIWRCLYDSL 359 (1088)
Q Consensus 285 ~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg---~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~d 359 (1088)
+.+++. ..+..|. .+.+++|+ +.+|++++.++ .|++||++++....+..|.+ .|++++|+|.
T Consensus 342 ~~~~~~-----------~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~-~v~~~~~~~~ 408 (415)
T 2hqs_A 342 LATGGV-----------QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDG-QVKFPAWSPY 408 (415)
T ss_dssp TTTCCE-----------EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSS-EEEEEEECCC
T ss_pred CCCCCE-----------EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCC-CCcCCccccc
Confidence 988543 1344454 78999998 57888888777 79999998888999999988 6999999996
Q ss_pred C
Q 001391 360 S 360 (1088)
Q Consensus 360 g 360 (1088)
.
T Consensus 409 ~ 409 (415)
T 2hqs_A 409 L 409 (415)
T ss_dssp C
T ss_pred c
Confidence 4
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.81 E-value=6.6e-18 Score=212.57 Aligned_cols=309 Identities=11% Similarity=-0.001 Sum_probs=200.3
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEe--CC-----eEEEEECCCCeeEEEEeeeCC-----------------------c
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGS--GS-----QVLLYDLEAGTLIRPFQVFHG-----------------------I 66 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~--d~-----~I~vwd~~tg~~~~~~~~~~~-----------------------~ 66 (1088)
...|.+++|| || +++|++++ ++ .|++||+.+++....+..+.. .
T Consensus 36 ~~~~~~~~~S--pd----G~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (741)
T 2ecf_A 36 GPTLMKPKVA--PD----GSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMT 109 (741)
T ss_dssp CCCCEEEEEC--TT----SSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCE
T ss_pred CCCCCCceEe--cC----CCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhcccc
Confidence 3569999999 99 88888876 56 899999999987766654322 2
Q ss_pred ceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d 146 (1088)
.|..++|| ||| ..|++..++.|.+||+.... ......+..|...+.+++|+| |
T Consensus 110 ~v~~~~~S-------pDg----~~l~~~~~~~i~~~d~~~~~-------------~~~~~~l~~~~~~~~~~~~SP---D 162 (741)
T 2ecf_A 110 GIVDYQWS-------PDA----QRLLFPLGGELYLYDLKQEG-------------KAAVRQLTHGEGFATDAKLSP---K 162 (741)
T ss_dssp ESCCCEEC-------TTS----SEEEEEETTEEEEEESSSCS-------------TTSCCBCCCSSSCEEEEEECT---T
T ss_pred CcceeEEC-------CCC----CEEEEEeCCcEEEEECCCCC-------------cceEEEcccCCcccccccCCC---C
Confidence 37899999 888 56666667999999998531 002344567788899999999 9
Q ss_pred CCEEEEEEcCCcEEEEEcCCCceEEEeccCCcee---------------EEEEeeecCCCCCcEEEEEecCC-eEEEEEe
Q 001391 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCL---------------LYSMKLWGDNLEALRIASGTIYN-EIIVWKV 210 (1088)
Q Consensus 147 ~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~---------------~~s~~~~~~s~~~~~l~sg~~dg-~I~vwd~ 210 (1088)
|++|+.++ ++.|++||+.+++.......+.... ..++.+ +||+..|++++.|+ .+..|+.
T Consensus 163 G~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~---SpDg~~l~~~~~d~~~~~~~~~ 238 (741)
T 2ecf_A 163 GGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWW---APDDSAIAYARIDESPVPVQKR 238 (741)
T ss_dssp SSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEE---CTTSSCEEEEEEECTTSCEEEE
T ss_pred CCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEE---CCCCCEEEEEEEcCCCCceEec
Confidence 99999887 5699999999887654433322211 123333 78999998887664 1111110
Q ss_pred ccCccccCCC--CCCCccCCCCCCCCceeEecccccc-eeeeEEEe--CCCCCEEEEEEcCCCCEEEEEEC-----CCcE
Q 001391 211 DWEHVAPLLN--SPEGNHAHGSSSDFKCFKLQDQQHT-AVNLFRLV--GHEGSIFRIEWSSCGSKLVSVSD-----DRSA 280 (1088)
Q Consensus 211 ~~~~~~~~~~--~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~--gh~~~V~~v~~sp~g~~l~s~s~-----Dg~v 280 (1088)
. ...+... ........+.......+.+|+.. + ++...... .|...+..++| |||++|+.++. +..|
T Consensus 239 ~--~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i 314 (741)
T 2ecf_A 239 Y--EVYADRTDVIEQRYPAAGDANVQVKLGVISPA-EQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDL 314 (741)
T ss_dssp E--EECSSCEEEEEEECCBTTSCCCEEEEEEECSS-TTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEE
T ss_pred C--CCCCCcccceEeecCCCCCCCCeeEEEEEECC-CCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEE
Confidence 0 0000000 00000000111111122222221 2 33222222 57888999999 99999987654 5689
Q ss_pred EEEEcCCCcccCCCCceeeeceeeeccCc----ceEEEEEC--CCEEEEEeCCCcEEEEcC--CCceeEEEcccCCCCeE
Q 001391 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNA----RVWDCCLT--DSFIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIW 352 (1088)
Q Consensus 281 ~iWd~~~~~~~~~~~~~~i~~~~~~~h~~----~I~~v~~~--~~~l~sg~~Dg~i~vWd~--~~~~~~~~~~h~~~~V~ 352 (1088)
++||+.+++. .. ....+.. .+.+++|+ +.++++++.||.+++|.+ +++ ...+..|.. .|.
T Consensus 315 ~~~d~~~g~~--------~~--~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~-~v~ 382 (741)
T 2ecf_A 315 VEVTLASNQQ--------RV--LAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNW-SVD 382 (741)
T ss_dssp EEEETTTCCE--------EE--EEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSS-CEE
T ss_pred EEEECCCCce--------EE--EEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecce-EEE
Confidence 9999988643 11 2222322 34578888 568889999998777765 566 777877766 588
Q ss_pred EE-EEcCCCCEEEE-EeCCC--CEEEEEcC
Q 001391 353 RC-LYDSLSSLLVT-AGFDS--AIKVHQFQ 378 (1088)
Q Consensus 353 ~l-~~~~dg~~l~t-g~~Dg--~I~iwd~~ 378 (1088)
.+ .|+|+++.|+. ++.|+ .+++|++.
T Consensus 383 ~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 383 ELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp EEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred eEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 87 59999987754 45555 89999874
No 134
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.80 E-value=1.6e-18 Score=217.63 Aligned_cols=326 Identities=9% Similarity=0.005 Sum_probs=216.2
Q ss_pred ceEEecCCCceeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCC--cceEEEEecccccccCCC
Q 001391 6 LSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHG--IRLHGISCNFINCTEGSV 83 (1088)
Q Consensus 6 i~iWdl~~g~~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~--~~V~~i~~s~~~~~~~~d 83 (1088)
+.+.++..+.....+.+++|+ || +++++++.+++|++||+.+++....+..+.. ..|..++|| ||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~s--pd----g~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~S-------pD 71 (723)
T 1xfd_A 5 VTVEDLFSEDFKIHDPEAKWI--SD----TEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEIS-------PD 71 (723)
T ss_dssp CCHHHHTCTTTCCCCCCCCBS--SS----SCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEEC-------TT
T ss_pred ccHHHHhCCCCcccccccEEc--CC----CcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEEC-------CC
Confidence 555666667666678899999 99 8888876689999999999988777765443 148999999 88
Q ss_pred ccceeeEEEEECC---------CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE
Q 001391 84 STRVTFEVALFGE---------KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC 154 (1088)
Q Consensus 84 ~~~~~~~la~~gd---------~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs 154 (1088)
|+ .++.++.+ +.+.+||+.... .+.+....+|...+..++|+| ||+.||.++
T Consensus 72 g~---~l~~~~~~~~~~~~~~~~~i~~~d~~~~~-------------~~~l~~~~~~~~~~~~~~~SP---dG~~la~~~ 132 (723)
T 1xfd_A 72 RE---YALFSYNVEPIYQHSYTGYYVLSKIPHGD-------------PQSLDPPEVSNAKLQYAGWGP---KGQQLIFIF 132 (723)
T ss_dssp SS---EEEEEESCCCCSSSCCCSEEEEEESSSCC-------------CEECCCTTCCSCCCSBCCBCS---STTCEEEEE
T ss_pred CC---EEEEEecCccceeecceeeEEEEECCCCc-------------eEeccCCccccccccccEECC---CCCEEEEEE
Confidence 83 34444433 789999998643 233444456777799999999 999999987
Q ss_pred cCCcEEEEEcCCCceEEEeccCCcee-----------------EEEEeeecCCCCCcEEEEEecC-CeEEEEEeccCccc
Q 001391 155 SDNSIRVWDISNSSIILEVHSPERCL-----------------LYSMKLWGDNLEALRIASGTIY-NEIIVWKVDWEHVA 216 (1088)
Q Consensus 155 ~Dg~V~iWd~~~~~~~~~~~~~~~~~-----------------~~s~~~~~~s~~~~~l~sg~~d-g~I~vwd~~~~~~~ 216 (1088)
. +.|++||+.+++.......+.... ..++.+ +||+..|++++.+ +.+.+|++......
T Consensus 133 ~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~---SpDg~~la~~~~~~~~~~~~~~~~~~~~ 208 (723)
T 1xfd_A 133 E-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWW---SPDGTRLAYAAINDSRVPIMELPTYTGS 208 (723)
T ss_dssp T-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEE---CTTSSEEEEEEEECTTSCEEEECCCSSS
T ss_pred C-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEE---CCCCCEEEEEEECCCccceEEeeccCCc
Confidence 5 899999999887765554432211 123444 7899999887755 46777876522111
Q ss_pred cCCC-CCCCccCCCCCCCCceeEecccccceeeeEEEeCC------CCCEEEEEEcCCCCEEEEEEC----CCcEEEEEc
Q 001391 217 PLLN-SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH------EGSIFRIEWSSCGSKLVSVSD----DRSARIWEV 285 (1088)
Q Consensus 217 ~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh------~~~V~~v~~sp~g~~l~s~s~----Dg~v~iWd~ 285 (1088)
.... .......+|.......+.+|+.. ++.....+..+ ...+..++|+|||+++++.+. +..|++||+
T Consensus 209 ~~~~~~~~~~~~~G~~~~~~~l~~~d~~-~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~ 287 (723)
T 1xfd_A 209 IYPTVKPYHYPKAGSENPSISLHVIGLN-GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDA 287 (723)
T ss_dssp SSCCCEEEECCBTTSCCCEEEEEEEESS-SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEET
T ss_pred CCCcceeccCCCCCCCCCeeEEEEEECC-CCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeC
Confidence 1000 11112233333334577777764 33333455544 678999999999998877653 357999999
Q ss_pred CCCcccCCCCceeeeceeeeccCcceE----EEEEC--CCEEEE--EeCCC------cEEEEc-CCCce---eEEEcccC
Q 001391 286 RAEYWKDSDSIEEVGSSVLYGHNARVW----DCCLT--DSFIIT--AGEDC------TCRVWG-SDGKQ---LKMIKEHI 347 (1088)
Q Consensus 286 ~~~~~~~~~~~~~i~~~~~~~h~~~I~----~v~~~--~~~l~s--g~~Dg------~i~vWd-~~~~~---~~~~~~h~ 347 (1088)
.+++. .. .....+...+. .++|+ +..|+. ...++ .|.+|| ..+.. ...+..+.
T Consensus 288 ~~g~~--------~~-~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~ 358 (723)
T 1xfd_A 288 TTGVC--------TK-KHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD 358 (723)
T ss_dssp TTCCE--------EE-EEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS
T ss_pred CCCcc--------eE-EEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCC
Confidence 88643 11 01122333333 67888 454543 55677 578888 44444 55555433
Q ss_pred CCCeEE-EEEcCCCCEEEEEeCC---CCEEEEEcC
Q 001391 348 GRGIWR-CLYDSLSSLLVTAGFD---SAIKVHQFQ 378 (1088)
Q Consensus 348 ~~~V~~-l~~~~dg~~l~tg~~D---g~I~iwd~~ 378 (1088)
. .+.. ++|+|||+.|+..+.+ +.+++|++.
T Consensus 359 ~-~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 359 W-DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp S-CEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred e-EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence 3 3554 6899999998766655 789999984
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.77 E-value=2.3e-17 Score=181.32 Aligned_cols=250 Identities=11% Similarity=0.041 Sum_probs=181.4
Q ss_pred CCCCCceEEecCCCc------eeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCC-CeeEEEEeeeCCcceEEEEe
Q 001391 1 MGKKDLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEA-GTLIRPFQVFHGIRLHGISC 73 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~------~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~t-g~~~~~~~~~~~~~V~~i~~ 73 (1088)
+.|++|++||+.+++ +.+.|.+++|+ |+ +++|+++.++.|++||+.+ ++.......+....|.+++|
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~s--pd----g~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVWQTPELFEAPNWS--PD----GKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGI 92 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEEEESSCCEEEEEC--TT----SSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEE
T ss_pred CcceeEEEEeCCCCceeeeccCCcceEeeEEC--CC----CCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEE
Confidence 357889999999987 45679999999 99 8999999999999999999 88776666554457899999
Q ss_pred cccccccCCCccceeeEEEEE--CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEE
Q 001391 74 NFINCTEGSVSTRVTFEVALF--GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1088)
Q Consensus 74 s~~~~~~~~d~~~~~~~la~~--gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la 151 (1088)
+ |+++ .++++. .++..+||.++... .....+..+. .+.+++|+| +++.|+
T Consensus 93 s-------pdg~---~l~~~~~~~~~~~~l~~~~~~~--------------~~~~~~~~~~-~~~~~~~sp---dg~~l~ 144 (297)
T 2ojh_A 93 S-------PDGA---LYAISDKVEFGKSAIYLLPSTG--------------GTPRLMTKNL-PSYWHGWSP---DGKSFT 144 (297)
T ss_dssp C-------TTSS---EEEEEECTTTSSCEEEEEETTC--------------CCCEECCSSS-SEEEEEECT---TSSEEE
T ss_pred C-------CCCC---EEEEEEeCCCCcceEEEEECCC--------------CceEEeecCC-CccceEECC---CCCEEE
Confidence 9 8873 444445 24577777776432 1122333333 489999999 999777
Q ss_pred -EEEcCCcEEEEEcCC-CceEEEeccCCceeEEEEeeecCCCCCcEEEEEe-cCCeEEEEEeccCccccCCCCCCCccCC
Q 001391 152 -IGCSDNSIRVWDISN-SSIILEVHSPERCLLYSMKLWGDNLEALRIASGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAH 228 (1088)
Q Consensus 152 -sgs~Dg~V~iWd~~~-~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~-~dg~I~vwd~~~~~~~~~~~~~~~~s~~ 228 (1088)
+++.|+.+++|++.. ......+..+. ..+.++.+ ++++..|+.++ .++.+.+|++..
T Consensus 145 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~---s~dg~~l~~~~~~~~~~~i~~~~~---------------- 204 (297)
T 2ojh_A 145 YCGIRDQVFDIYSMDIDSGVETRLTHGE-GRNDGPDY---SPDGRWIYFNSSRTGQMQIWRVRV---------------- 204 (297)
T ss_dssp EEEEETTEEEEEEEETTTCCEEECCCSS-SCEEEEEE---CTTSSEEEEEECTTSSCEEEEEET----------------
T ss_pred EEECCCCceEEEEEECCCCcceEcccCC-CccccceE---CCCCCEEEEEecCCCCccEEEECC----------------
Confidence 788899999999643 22333333332 23455555 67888777655 589999999861
Q ss_pred CCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC-----------CcEEEEEcCCCcccCCCCce
Q 001391 229 GSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD-----------RSARIWEVRAEYWKDSDSIE 297 (1088)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D-----------g~v~iWd~~~~~~~~~~~~~ 297 (1088)
.......+..|...+..++|+|++++|++++.+ +.|.+||+.+++. .
T Consensus 205 ----------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~------~ 262 (297)
T 2ojh_A 205 ----------------DGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV------E 262 (297)
T ss_dssp ----------------TSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC------E
T ss_pred ----------------CCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc------e
Confidence 233455667788889999999999999888766 5699999987543 2
Q ss_pred eeeceeeeccCcceEEEEEC--CCEEEEEeCCC
Q 001391 298 EVGSSVLYGHNARVWDCCLT--DSFIITAGEDC 328 (1088)
Q Consensus 298 ~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg 328 (1088)
.+. .+.+|...+.+++|+ +..|++++.+.
T Consensus 263 ~~~--~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 263 TLF--DLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEE--EEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred eee--ccCCCCcccccceECCCCCEEEEEEecc
Confidence 232 455788889999998 56777776553
No 136
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.76 E-value=1.1e-16 Score=200.13 Aligned_cols=291 Identities=8% Similarity=0.039 Sum_probs=199.1
Q ss_pred CCCCceEEecCCCcee-------------------------eeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCee
Q 001391 2 GKKDLSEWRLDVGQYL-------------------------GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTL 56 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~~~-------------------------~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~ 56 (1088)
.|+ | +||+.+|+.. ..|.+++|+ || +.++.+.++.|++||+.+++.
T Consensus 43 ~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~s--pd-----~~~~~~~~~~i~~~d~~~~~~ 113 (706)
T 2z3z_A 43 GDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDA--GR-----GLVVLFTQGGLVGFDMLARKV 113 (706)
T ss_dssp TTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEET--TT-----TEEEEEETTEEEEEETTTTEE
T ss_pred CCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEEC--CC-----CeEEEEECCEEEEEECCCCce
Confidence 355 8 9999988651 459999999 97 455666789999999999876
Q ss_pred EEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEecc-----CCCCCCCCCCccccccceeeeccCC
Q 001391 57 IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNF-----ELSPNSQYQPETCVNLSLVQSLPRL 131 (1088)
Q Consensus 57 ~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~-----~~~~~~~~~~~~~~~~~~~~~l~~h 131 (1088)
..... +.. .+..++|| ||| ..|++..++.|.+|++.. .. .......+
T Consensus 114 ~~l~~-~~~-~~~~~~~S-------pdG----~~la~~~~~~i~v~~~~~~~~~~g~---------------~~~~~~~~ 165 (706)
T 2z3z_A 114 TYLFD-TNE-ETASLDFS-------PVG----DRVAYVRNHNLYIARGGKLGEGMSR---------------AIAVTIDG 165 (706)
T ss_dssp EEEEC-CTT-CCTTCEEC-------TTS----SEEEEEETTEEEEEECBCTTSCCCC---------------CEESCSCC
T ss_pred EEccC-Ccc-cccCCcCC-------CCC----CEEEEEECCeEEEEecCcccccCCC---------------cEEeccCC
Confidence 54433 333 68899999 888 567777899999999986 32 11111112
Q ss_pred --------------CCcEEEEEEecccCCCCEEEEEE---------------------------------cCCcEEEEEc
Q 001391 132 --------------SHWVFDVCFLKVCNGNRSLAIGC---------------------------------SDNSIRVWDI 164 (1088)
Q Consensus 132 --------------~~~I~~v~f~p~~~d~~~lasgs---------------------------------~Dg~V~iWd~ 164 (1088)
...+.+++|+| ||++|++++ .+..|.+||+
T Consensus 166 ~~~~~~g~~~~~ee~~~~~~~~~Sp---Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~ 242 (706)
T 2z3z_A 166 TETLVYGQAVHQREFGIEKGTFWSP---KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHL 242 (706)
T ss_dssp BTTEEESSCCGGGCTTCCCSEEECT---TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEET
T ss_pred CCCeEcccchhhhhcCCCceEEECC---CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEEC
Confidence 23368999999 999999987 4567999999
Q ss_pred CCCceEEEecc-CCceeEEEEeeecCCCCCcEEEEEecCC-----eEEEEEeccCccccCCCCCCCccCCCCCCCCceeE
Q 001391 165 SNSSIILEVHS-PERCLLYSMKLWGDNLEALRIASGTIYN-----EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (1088)
Q Consensus 165 ~~~~~~~~~~~-~~~~~~~s~~~~~~s~~~~~l~sg~~dg-----~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 238 (1088)
.+++....... .....+.++.+ +||+..|++++.++ .|.+||+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~---spdg~~l~~~~~~~~~~~~~v~~~d~~--------------------------- 292 (706)
T 2z3z_A 243 ATGKTVYLQTGEPKEKFLTNLSW---SPDENILYVAEVNRAQNECKVNAYDAE--------------------------- 292 (706)
T ss_dssp TTTEEEECCCCSCTTCEEEEEEE---CTTSSEEEEEEECTTSCEEEEEEEETT---------------------------
T ss_pred CCCceEeeccCCCCceeEeeEEE---ECCCCEEEEEEeCCCCCeeEEEEEECC---------------------------
Confidence 98876543322 22334556665 78999998877765 89999987
Q ss_pred ecccccceeeeEEEe--CCCC---CEEEEEEcC--CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcce
Q 001391 239 LQDQQHTAVNLFRLV--GHEG---SIFRIEWSS--CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311 (1088)
Q Consensus 239 ~~~~~~~~~~~~~~~--gh~~---~V~~v~~sp--~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I 311 (1088)
++.....+. .+.. .+..++|+| +|+++++++.|+.+++|.+... ...+. .+..|...+
T Consensus 293 ------~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~-------~~~~~--~l~~~~~~v 357 (706)
T 2z3z_A 293 ------TGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT-------GRLIR--QVTKGEWEV 357 (706)
T ss_dssp ------TCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETT-------SCEEE--ECCCSSSCE
T ss_pred ------CCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECC-------CCEEE--ecCCCCeEE
Confidence 331111111 2222 246789999 9999999999999999988631 12232 556677777
Q ss_pred EE-EEEC--CCEEE-EEeCCC----cEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCC----CCEEEEEcCC
Q 001391 312 WD-CCLT--DSFII-TAGEDC----TCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD----SAIKVHQFQA 379 (1088)
Q Consensus 312 ~~-v~~~--~~~l~-sg~~Dg----~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~D----g~I~iwd~~~ 379 (1088)
.. ++|+ +..|+ ++..++ .|..|+..+.....+. |.. .+.+++|+|||++|+....+ +.|.+||+.+
T Consensus 358 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~-~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 358 TNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLT-PES-GMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp EEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESC-CSS-SEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred EeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceecc-CCC-ceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence 76 7898 45555 444554 6667777444455554 444 69999999999988776544 4599999854
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.76 E-value=5.6e-17 Score=204.11 Aligned_cols=291 Identities=13% Similarity=0.122 Sum_probs=208.4
Q ss_pred CceEEecCCCce---------e----------------------eeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCC
Q 001391 5 DLSEWRLDVGQY---------L----------------------GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEA 53 (1088)
Q Consensus 5 ~i~iWdl~~g~~---------~----------------------~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~t 53 (1088)
+|++||+.+++. . ..|.+++|| || +++|+++.++.|++||+.+
T Consensus 65 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S--pD----g~~l~~~~~~~i~~~d~~~ 138 (741)
T 2ecf_A 65 DLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS--PD----AQRLLFPLGGELYLYDLKQ 138 (741)
T ss_dssp EEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC--TT----SSEEEEEETTEEEEEESSS
T ss_pred EEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC--CC----CCEEEEEeCCcEEEEECCC
Confidence 799999998861 1 348899999 99 9999999999999999998
Q ss_pred Ce--eEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCC
Q 001391 54 GT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRL 131 (1088)
Q Consensus 54 g~--~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h 131 (1088)
+. .+..+..+.. .+..++|| ||| ..|+...++.|.+|++.... .......+
T Consensus 139 ~~~~~~~~l~~~~~-~~~~~~~S-------PDG----~~la~~~~~~i~~~d~~~g~---------------~~~~~~~~ 191 (741)
T 2ecf_A 139 EGKAAVRQLTHGEG-FATDAKLS-------PKG----GFVSFIRGRNLWVIDLASGR---------------QMQLTADG 191 (741)
T ss_dssp CSTTSCCBCCCSSS-CEEEEEEC-------TTS----SEEEEEETTEEEEEETTTTE---------------EEECCCCC
T ss_pred CCcceEEEcccCCc-ccccccCC-------CCC----CEEEEEeCCcEEEEecCCCC---------------EEEeccCC
Confidence 83 3344554444 69999999 888 67777778899999987532 11111222
Q ss_pred CC----------------cEEEEEEecccCCCCEEEEEEcCC---------------------------------cEEEE
Q 001391 132 SH----------------WVFDVCFLKVCNGNRSLAIGCSDN---------------------------------SIRVW 162 (1088)
Q Consensus 132 ~~----------------~I~~v~f~p~~~d~~~lasgs~Dg---------------------------------~V~iW 162 (1088)
.. .+.+++|+| ||++|++++.|+ .|.+|
T Consensus 192 ~~~~~~g~~~~v~~~~~~~~~~~~~Sp---Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~ 268 (741)
T 2ecf_A 192 STTIGNGIAEFVADEEMDRHTGYWWAP---DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI 268 (741)
T ss_dssp CSSEEESCCCHHHHHHSCCCCSEEECT---TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred ccceeccccceeeeeccccccceEECC---CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence 22 247899999 999999988766 78899
Q ss_pred EcCC-CceEEEecc-CCceeEEEEeeecCCCCCcEEEEEec-----CCeEEEEEeccCccccCCCCCCCccCCCCCCCCc
Q 001391 163 DISN-SSIILEVHS-PERCLLYSMKLWGDNLEALRIASGTI-----YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (1088)
Q Consensus 163 d~~~-~~~~~~~~~-~~~~~~~s~~~~~~s~~~~~l~sg~~-----dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~ 235 (1088)
|+.+ ++....... .....+.++++ +|+..|+.+.. +..|.+||+.
T Consensus 269 d~~~~~~~~~~~~~~~~~~~~~~~~~----pDg~~l~~~~~~~~~~~~~i~~~d~~------------------------ 320 (741)
T 2ecf_A 269 SPAEQAQTQWIDLGKEQDIYLARVNW----RDPQHLSFQRQSRDQKKLDLVEVTLA------------------------ 320 (741)
T ss_dssp CSSTTCCCEEECCCSCSSEEEEEEEE----EETTEEEEEEEETTSSEEEEEEEETT------------------------
T ss_pred ECCCCCceEEecCCCCcceEEEEEEe----CCCCEEEEEEecccCCeEEEEEEECC------------------------
Confidence 9988 776544322 23334555544 57888876543 5779999987
Q ss_pred eeEecccccceeeeEEEeCCCC----CEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcce
Q 001391 236 CFKLQDQQHTAVNLFRLVGHEG----SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311 (1088)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~gh~~----~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I 311 (1088)
+++....+..|.. .+..++|+|||+++++++.|+.++||.+... .. .. .+..|...+
T Consensus 321 ---------~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~-------~~-~~--~l~~~~~~v 381 (741)
T 2ecf_A 321 ---------SNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSK-------GK-AA--ALTHGNWSV 381 (741)
T ss_dssp ---------TCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSS-------SC-EE--ESCCSSSCE
T ss_pred ---------CCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCC-------CC-ee--eeeecceEE
Confidence 4444444444433 4568999999999999999998888887632 12 22 666777788
Q ss_pred EEE-EEC--CCEE-EEEeCCC--cEEEEcC--CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCC----CCEEEEEcCC
Q 001391 312 WDC-CLT--DSFI-ITAGEDC--TCRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD----SAIKVHQFQA 379 (1088)
Q Consensus 312 ~~v-~~~--~~~l-~sg~~Dg--~i~vWd~--~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~D----g~I~iwd~~~ 379 (1088)
..+ .|+ +..| ++++.++ .+++|++ .++....+.. .. .+.+++|+||+++|+....+ +.+.+|+..+
T Consensus 382 ~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~-~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 382 DELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-AP-GMHSASFARNASVYVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp EEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SC-SEEEEEECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred EeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CC-CceEEEECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence 877 487 4555 5566666 8999998 4666777766 34 58999999999988776544 4678888755
Q ss_pred C
Q 001391 380 F 380 (1088)
Q Consensus 380 ~ 380 (1088)
.
T Consensus 460 ~ 460 (741)
T 2ecf_A 460 E 460 (741)
T ss_dssp C
T ss_pred C
Confidence 4
No 138
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.75 E-value=5.6e-16 Score=174.63 Aligned_cols=285 Identities=16% Similarity=0.210 Sum_probs=185.4
Q ss_pred CCCCceEEecC-CCc--------eeeeeEEEEEeccCCCCCCCCEEEEEe-C-CeEEEEECC--CCe--eEEEEeeeCCc
Q 001391 2 GKKDLSEWRLD-VGQ--------YLGEISALCFVHLPSHLSSLPFLLAGS-G-SQVLLYDLE--AGT--LIRPFQVFHGI 66 (1088)
Q Consensus 2 ~d~~i~iWdl~-~g~--------~~~~V~~v~fs~~pd~~~~~~~laag~-d-~~I~vwd~~--tg~--~~~~~~~~~~~ 66 (1088)
.|+.|++||+. ++. +.+.+.+++|+ |+ +++|+++. + +.|++|++. +++ .+..+.. ..
T Consensus 13 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--pd----g~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~- 84 (343)
T 1ri6_A 13 ESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVS--PD----KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL-PG- 84 (343)
T ss_dssp GGTEEEEEEECTTSCEEEEEEEECSSCCCCEEEC--TT----SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC-SS-
T ss_pred CCCeEEEEEECCCCcEEEeeeEecCCCCceEEEC--CC----CCEEEEeecCCCeEEEEEecCCCCceeecccccc-CC-
Confidence 57899999995 332 33467899999 99 88888877 4 899999997 555 3444444 23
Q ss_pred ceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~ 145 (1088)
.+..++|+ |+++ .++++.. ++.|.+|++.... ..+....+..+ ..+.+++|+|
T Consensus 85 ~~~~~~~s-------~dg~---~l~~~~~~~~~i~~~d~~~~~------------~~~~~~~~~~~-~~~~~~~~s~--- 138 (343)
T 1ri6_A 85 SLTHISTD-------HQGQ---FVFVGSYNAGNVSVTRLEDGL------------PVGVVDVVEGL-DGCHSANISP--- 138 (343)
T ss_dssp CCSEEEEC-------TTSS---EEEEEETTTTEEEEEEEETTE------------EEEEEEEECCC-TTBCCCEECT---
T ss_pred CCcEEEEc-------CCCC---EEEEEecCCCeEEEEECCCCc------------cccccccccCC-CCceEEEECC---
Confidence 68999999 7773 4545554 7899999995111 13344444444 4589999999
Q ss_pred CCCEEEEEE-cCCcEEEEEcCC-CceEE----EeccCCceeEEEEeeecCCCCCcEEEE-EecCCeEEEEEeccCccccC
Q 001391 146 GNRSLAIGC-SDNSIRVWDISN-SSIIL----EVHSPERCLLYSMKLWGDNLEALRIAS-GTIYNEIIVWKVDWEHVAPL 218 (1088)
Q Consensus 146 d~~~lasgs-~Dg~V~iWd~~~-~~~~~----~~~~~~~~~~~s~~~~~~s~~~~~l~s-g~~dg~I~vwd~~~~~~~~~ 218 (1088)
++++|++++ .++.|++||+.+ ++... .+..+.......+.+ ++++..+++ +..++.|.+|++.....
T Consensus 139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~pdg~~l~~~~~~~~~i~~~~~~~~~g--- 212 (343)
T 1ri6_A 139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVF---HPNEQYAYCVNELNSSVDVWELKDPHG--- 212 (343)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEE---CTTSSEEEEEETTTTEEEEEESSCTTS---
T ss_pred CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEE---CCCCCEEEEEeCCCCEEEEEEecCCCC---
Confidence 999888887 899999999987 65432 223333334445555 678886654 45889999999861000
Q ss_pred CCCCCCccCCCCCCCCceeEecccccceeeeEEEe----C--CCCCEEEEEEcCCCCEEEE-EECCCcEEEEEcCCCccc
Q 001391 219 LNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV----G--HEGSIFRIEWSSCGSKLVS-VSDDRSARIWEVRAEYWK 291 (1088)
Q Consensus 219 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~----g--h~~~V~~v~~sp~g~~l~s-~s~Dg~v~iWd~~~~~~~ 291 (1088)
.......+. + ....+..++|+|++++++. +..++.|++|++.....
T Consensus 213 --------------------------~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~- 265 (343)
T 1ri6_A 213 --------------------------NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS- 265 (343)
T ss_dssp --------------------------CCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC-
T ss_pred --------------------------cEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCC-
Confidence 011111221 1 1346778999999998774 55789999999983110
Q ss_pred CCCCceeeeceeeeccCcceEEEEEC--CCEEEEEe-CCCcEEEEcC---CCc--eeEEEcccCCCCeEEEEEcCCCC
Q 001391 292 DSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG-EDCTCRVWGS---DGK--QLKMIKEHIGRGIWRCLYDSLSS 361 (1088)
Q Consensus 292 ~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~-~Dg~i~vWd~---~~~--~~~~~~~h~~~~V~~l~~~~dg~ 361 (1088)
..+.+. ....+.. +.+++|+ +.+|++++ .++.+.+|++ +++ .+..+... ....+++|.++.+
T Consensus 266 ---~~~~~~--~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g--~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 266 ---VLSKEG--FQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG--QGPMWVVVNAHEG 335 (343)
T ss_dssp ---CEEEEE--EEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS--SSCCEEEEEEEC-
T ss_pred ---ceEEee--eecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC--CCCeeEEEEcccC
Confidence 013332 3333333 8889998 56777777 6899999965 343 23333332 2356777776543
No 139
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.75 E-value=2.2e-15 Score=170.72 Aligned_cols=266 Identities=11% Similarity=0.035 Sum_probs=193.7
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe--------CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceee
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS--------GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~--------d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~ 89 (1088)
..+..++|+ |+ +++|+++. ++.|.+||..+++.+..+.... .+.+++|+ |+++ .
T Consensus 41 ~~~~~~~~s--~d----g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s-------~dg~---~ 102 (353)
T 3vgz_A 41 KGAYEMAYS--QQ----ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL--KPFGATIN-------NTTQ---T 102 (353)
T ss_dssp SSEEEEEEE--TT----TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS--CCCSEEEE-------TTTT---E
T ss_pred cCccceEEC--CC----CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC--CcceEEEC-------CCCC---E
Confidence 457789999 98 77887766 4689999999999998887633 47899999 7773 4
Q ss_pred EEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCC---------cEEEEEEecccCCCCEEEEEE--cCC
Q 001391 90 EVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH---------WVFDVCFLKVCNGNRSLAIGC--SDN 157 (1088)
Q Consensus 90 ~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~---------~I~~v~f~p~~~d~~~lasgs--~Dg 157 (1088)
++++.. ++.|.+||+... +.+..+..+.. .+.+++|+| +++++++++ .++
T Consensus 103 l~v~~~~~~~v~~~d~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---dg~~l~~~~~~~~~ 164 (353)
T 3vgz_A 103 LWFGNTVNSAVTAIDAKTG---------------EVKGRLVLDDRKRTEEVRPLQPRELVADD---ATNTVYISGIGKES 164 (353)
T ss_dssp EEEEETTTTEEEEEETTTC---------------CEEEEEESCCCCCCSSCCCCEEEEEEEET---TTTEEEEEEESSSC
T ss_pred EEEEecCCCEEEEEeCCCC---------------eeEEEEecCCCccccccCCCCCceEEECC---CCCEEEEEecCCCc
Confidence 555544 799999998753 23333333322 378999999 999877765 478
Q ss_pred cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCcee
Q 001391 158 SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCF 237 (1088)
Q Consensus 158 ~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 237 (1088)
.|.+||..+++.+..+..... ....+.+ ++++..+++++.++.|.+||..
T Consensus 165 ~i~~~d~~~~~~~~~~~~~~~-~~~~~~~---s~dg~~l~~~~~~~~i~~~d~~-------------------------- 214 (353)
T 3vgz_A 165 VIWVVDGGNIKLKTAIQNTGK-MSTGLAL---DSEGKRLYTTNADGELITIDTA-------------------------- 214 (353)
T ss_dssp EEEEEETTTTEEEEEECCCCT-TCCCCEE---ETTTTEEEEECTTSEEEEEETT--------------------------
T ss_pred eEEEEcCCCCceEEEecCCCC-ccceEEE---CCCCCEEEEEcCCCeEEEEECC--------------------------
Confidence 999999999998887762211 1122333 4788899999999999999998
Q ss_pred EecccccceeeeEEEe----CCCCCEEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceE
Q 001391 238 KLQDQQHTAVNLFRLV----GHEGSIFRIEWSSCGSKLVSVSD-DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312 (1088)
Q Consensus 238 ~~~~~~~~~~~~~~~~----gh~~~V~~v~~sp~g~~l~s~s~-Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~ 312 (1088)
+++.+..+. ++...+.+++|+|++++++.++. ++.|.+||..+++. +. ...... ..
T Consensus 215 -------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~--------~~--~~~~~~--~~ 275 (353)
T 3vgz_A 215 -------DNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI--------LA--KVAAPE--SL 275 (353)
T ss_dssp -------TTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE--------EE--EEECSS--CC
T ss_pred -------CCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE--------EE--EEEcCC--Cc
Confidence 455555544 35667899999999997766654 59999999988543 22 122111 24
Q ss_pred EEEEC--CCEE-EEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCC
Q 001391 313 DCCLT--DSFI-ITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS 370 (1088)
Q Consensus 313 ~v~~~--~~~l-~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg 370 (1088)
.++|+ ++.+ ++...++.|.+||. +++.+..+.... .+.+++|+|++++|+.+..++
T Consensus 276 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 276 AVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT--HPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS--EEEEEEECTTSCEEEEEEECC
T ss_pred eEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC--CCCeEEEcCCCCEEEEEEccc
Confidence 57776 5544 55557999999999 677777776544 589999999999877776654
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.75 E-value=2.3e-16 Score=173.22 Aligned_cols=249 Identities=11% Similarity=0.025 Sum_probs=181.2
Q ss_pred CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEecc-CCCCCCCCCCccccc
Q 001391 43 GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNF-ELSPNSQYQPETCVN 121 (1088)
Q Consensus 43 d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~-~~~~~~~~~~~~~~~ 121 (1088)
+++|++||+.+++..... .+.. .|.+++|+ |++ .++++.+++.|.+||+.. ..
T Consensus 21 ~~~i~~~d~~~~~~~~~~-~~~~-~v~~~~~s-------pdg----~~l~~~~~~~i~~~d~~~~~~------------- 74 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVW-QTPE-LFEAPNWS-------PDG----KYLLLNSEGLLYRLSLAGDPS------------- 74 (297)
T ss_dssp CEEEEEEETTTTEEEEEE-EESS-CCEEEEEC-------TTS----SEEEEEETTEEEEEESSSCCS-------------
T ss_pred ceeEEEEeCCCCceeeec-cCCc-ceEeeEEC-------CCC----CEEEEEcCCeEEEEeCCCCCC-------------
Confidence 589999999998876444 4444 69999999 888 677777799999999985 32
Q ss_pred cceeeeccCC-CCcEEEEEEecccCCCCEEEEEE--cCCcEEEEEc--CCCceEEEeccCCceeEEEEeeecCCCCCcEE
Q 001391 122 LSLVQSLPRL-SHWVFDVCFLKVCNGNRSLAIGC--SDNSIRVWDI--SNSSIILEVHSPERCLLYSMKLWGDNLEALRI 196 (1088)
Q Consensus 122 ~~~~~~l~~h-~~~I~~v~f~p~~~d~~~lasgs--~Dg~V~iWd~--~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l 196 (1088)
......+| ...|.+++|+| ++++|++++ .++..+||.+ .+++ ...+..+.. ...+.+ ++++..|
T Consensus 75 --~~~~~~~~~~~~~~~~~~sp---dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~--~~~~~~---spdg~~l 143 (297)
T 2ojh_A 75 --PEKVDTGFATICNNDHGISP---DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLP--SYWHGW---SPDGKSF 143 (297)
T ss_dssp --CEECCCTTCCCBCSCCEECT---TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSS--EEEEEE---CTTSSEE
T ss_pred --ceEeccccccccccceEECC---CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCC--ccceEE---CCCCCEE
Confidence 22333444 47889999999 999999998 3455666655 4444 334433332 444554 6788877
Q ss_pred E-EEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEE
Q 001391 197 A-SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (1088)
Q Consensus 197 ~-sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s 275 (1088)
+ ++..++.+.+|++.. .......+..|...+.+++|+|++++++.++
T Consensus 144 ~~~~~~~~~~~l~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 191 (297)
T 2ojh_A 144 TYCGIRDQVFDIYSMDI--------------------------------DSGVETRLTHGEGRNDGPDYSPDGRWIYFNS 191 (297)
T ss_dssp EEEEEETTEEEEEEEET--------------------------------TTCCEEECCCSSSCEEEEEECTTSSEEEEEE
T ss_pred EEEECCCCceEEEEEEC--------------------------------CCCcceEcccCCCccccceECCCCCEEEEEe
Confidence 6 788899999999861 1223455667888999999999999888766
Q ss_pred -CCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC-----------CcEEEEcC-CCce-
Q 001391 276 -DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED-----------CTCRVWGS-DGKQ- 339 (1088)
Q Consensus 276 -~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D-----------g~i~vWd~-~~~~- 339 (1088)
.++.+++|++.... ..+. .+..|...+.+++|+ +.+|++++.+ +.|++||+ +++.
T Consensus 192 ~~~~~~~i~~~~~~~-------~~~~--~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 262 (297)
T 2ojh_A 192 SRTGQMQIWRVRVDG-------SSVE--RITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVE 262 (297)
T ss_dssp CTTSSCEEEEEETTS-------SCEE--ECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCE
T ss_pred cCCCCccEEEECCCC-------CCcE--EEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCce
Confidence 58999999986321 1222 566777889999998 5778877765 56999999 4443
Q ss_pred -eEEEcccCCCCeEEEEEcCCCCEEEEEeCCC
Q 001391 340 -LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS 370 (1088)
Q Consensus 340 -~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg 370 (1088)
+..+..|.. .+..++|+|++++|++++.|.
T Consensus 263 ~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 263 TLFDLFGGQG-TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEESTT-TSCSCCBCTTSSEEEEEEECC
T ss_pred eeeccCCCCc-ccccceECCCCCEEEEEEecc
Confidence 334446776 699999999999998887664
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.74 E-value=1.4e-15 Score=171.41 Aligned_cols=275 Identities=12% Similarity=0.096 Sum_probs=178.6
Q ss_pred CEEEEE-e-CCeEEEEECC-CC--eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECC-CEEEEEEeccCCC
Q 001391 36 PFLLAG-S-GSQVLLYDLE-AG--TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE-KRVKLFELNFELS 109 (1088)
Q Consensus 36 ~~laag-~-d~~I~vwd~~-tg--~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd-~~v~iw~l~~~~~ 109 (1088)
++|+++ . ++.|++||+. ++ +.+..+. +...+.+++|+ |+++ .++++..+ +.|++|++....
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s-------pdg~---~l~~~~~~~~~v~~~~~~~~~- 71 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVVD--VPGQVQPMVVS-------PDKR---YLYVGVRPEFRVLAYRIAPDD- 71 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSCCCCEEEC-------TTSS---EEEEEETTTTEEEEEEECTTT-
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeEe--cCCCCceEEEC-------CCCC---EEEEeecCCCeEEEEEecCCC-
Confidence 444444 4 7999999995 44 3333333 33468999999 7873 45555554 999999997321
Q ss_pred CCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc-CCcEEEEEcC---CCceEEEeccCCceeEEEEe
Q 001391 110 PNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDIS---NSSIILEVHSPERCLLYSMK 185 (1088)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~-Dg~V~iWd~~---~~~~~~~~~~~~~~~~~s~~ 185 (1088)
+ ..+.+..+..+. .+.+++|+| ++++|++++. ++.|.+||+. ..+.+..+..+.. ...++
T Consensus 72 -~---------~~~~~~~~~~~~-~~~~~~~s~---dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~--~~~~~ 135 (343)
T 1ri6_A 72 -G---------ALTFAAESALPG-SLTHISTDH---QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDG--CHSAN 135 (343)
T ss_dssp -C---------CEEEEEEEECSS-CCSEEEECT---TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTT--BCCCE
T ss_pred -C---------ceeeccccccCC-CCcEEEEcC---CCCEEEEEecCCCeEEEEECCCCccccccccccCCCC--ceEEE
Confidence 0 134445554444 789999999 9998877665 8899999994 3334444443322 23333
Q ss_pred eecCCCCCcEEEEEe-cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeE--EEeC-CCCCEEE
Q 001391 186 LWGDNLEALRIASGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF--RLVG-HEGSIFR 261 (1088)
Q Consensus 186 ~~~~s~~~~~l~sg~-~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~--~~~g-h~~~V~~ 261 (1088)
+ ++++..+++++ .++.|.+||+.+.. ...... .+.. ....+..
T Consensus 136 ~---s~dg~~l~~~~~~~~~v~~~d~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~ 182 (343)
T 1ri6_A 136 I---SPDNRTLWVPALKQDRICLFTVSDDG------------------------------HLVAQDPAEVTTVEGAGPRH 182 (343)
T ss_dssp E---CTTSSEEEEEEGGGTEEEEEEECTTS------------------------------CEEEEEEEEEECSTTCCEEE
T ss_pred E---CCCCCEEEEecCCCCEEEEEEecCCC------------------------------ceeeecccccccCCCCCcce
Confidence 3 67888777776 89999999997100 111111 2232 3457889
Q ss_pred EEEcCCCCEEEEEE-CCCcEEEEEcCCCcccCCCCceeeecee-ee-cc--CcceEEEEEC--CCEEE-EEeCCCcEEEE
Q 001391 262 IEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIEEVGSSV-LY-GH--NARVWDCCLT--DSFII-TAGEDCTCRVW 333 (1088)
Q Consensus 262 v~~sp~g~~l~s~s-~Dg~v~iWd~~~~~~~~~~~~~~i~~~~-~~-~h--~~~I~~v~~~--~~~l~-sg~~Dg~i~vW 333 (1088)
++|+|++++++.++ .++.|++|++..... ......... .. ++ ...+..++|+ +.+|+ ++..++.|++|
T Consensus 183 ~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~ 258 (343)
T 1ri6_A 183 MVFHPNEQYAYCVNELNSSVDVWELKDPHG----NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVF 258 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEESSCTTS----CCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCC----cEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEE
Confidence 99999999776554 789999999964211 011121001 11 11 3356789998 45565 55589999999
Q ss_pred cCC--C---ceeEEEcccCCCCeEEEEEcCCCCEEEEEe-CCCCEEEEEcC
Q 001391 334 GSD--G---KQLKMIKEHIGRGIWRCLYDSLSSLLVTAG-FDSAIKVHQFQ 378 (1088)
Q Consensus 334 d~~--~---~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~-~Dg~I~iwd~~ 378 (1088)
++. + +.+..+..+. .+..++|+|++++|++++ .|+.|.+|+++
T Consensus 259 d~~~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 259 SVSEDGSVLSKEGFQPTET--QPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EECTTSCCEEEEEEEECSS--SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EEcCCCCceEEeeeecCCC--ccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 995 3 2333344333 378999999999888887 68999999763
No 142
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.74 E-value=2e-15 Score=169.61 Aligned_cols=275 Identities=10% Similarity=0.027 Sum_probs=185.2
Q ss_pred CCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCC
Q 001391 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNS 112 (1088)
Q Consensus 35 ~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~ 112 (1088)
+.+++++. ++.|++||..+++.+..+..+.. .+ +++|+ |+++ .++++.. ++.|.+||+....
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~-~~~~s-------~dg~---~l~~~~~~~~~i~~~d~~~~~---- 73 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYD-FV-DTAIT-------SDCS---NVVVTSDFCQTLVQIETQLEP---- 73 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEECCCC-EE-EEEEC-------SSSC---EEEEEESTTCEEEEEECSSSS----
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEccCC-cc-eEEEc-------CCCC---EEEEEeCCCCeEEEEECCCCc----
Confidence 34455555 69999999999999888886544 46 99999 7873 4555555 7899999998533
Q ss_pred CCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCC---cEEEEEcCCCceEEEeccCCceeEEEEeeecC
Q 001391 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN---SIRVWDISNSSIILEVHSPERCLLYSMKLWGD 189 (1088)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg---~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~ 189 (1088)
. ....+..+.....+++|+| ++++|+++..++ .|.+||+.+++.+..+..+.. ...+++
T Consensus 74 ---------~-~~~~~~~~~~~~~~~~~s~---dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~--~~~~~~--- 135 (331)
T 3u4y_A 74 ---------P-KVVAIQEGQSSMADVDITP---DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYD--AVGIAI--- 135 (331)
T ss_dssp ---------C-EEEEEEECSSCCCCEEECT---TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTT--EEEEEE---
T ss_pred ---------e-eEEecccCCCCccceEECC---CCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCC--ccceEE---
Confidence 1 1445555666666699999 999998555553 899999999988877765443 245555
Q ss_pred CCCCcEE-EEEecCCe-EEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCC
Q 001391 190 NLEALRI-ASGTIYNE-IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC 267 (1088)
Q Consensus 190 s~~~~~l-~sg~~dg~-I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~ 267 (1088)
+|++..+ +++..++. |.+|++....... ... ...+ .+...+..++|+|+
T Consensus 136 spdg~~l~~~~~~~~~~i~~~~~~~~g~~~---------------------------~~~-~~~~-~~~~~~~~~~~spd 186 (331)
T 3u4y_A 136 SPNGNGLILIDRSSANTVRRFKIDADGVLF---------------------------DTG-QEFI-SGGTRPFNITFTPD 186 (331)
T ss_dssp CTTSSCEEEEEETTTTEEEEEEECTTCCEE---------------------------EEE-EEEE-CSSSSEEEEEECTT
T ss_pred CCCCCEEEEEecCCCceEEEEEECCCCcEe---------------------------ecC-Cccc-cCCCCccceEECCC
Confidence 6788744 45556688 9999987110000 111 1222 34556899999999
Q ss_pred CCEEEE-EECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEE-eCCCcEEEEcC-CCce--e
Q 001391 268 GSKLVS-VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA-GEDCTCRVWGS-DGKQ--L 340 (1088)
Q Consensus 268 g~~l~s-~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg-~~Dg~i~vWd~-~~~~--~ 340 (1088)
|++++. +..++.|++||+.+++. .+.+. .+. +...+..++|+ +.+++.+ ..++.|.+||. +++. +
T Consensus 187 g~~l~v~~~~~~~v~v~d~~~~~~-----~~~~~--~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~ 258 (331)
T 3u4y_A 187 GNFAFVANLIGNSIGILETQNPEN-----ITLLN--AVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFV 258 (331)
T ss_dssp SSEEEEEETTTTEEEEEECSSTTS-----CEEEE--EEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCCCCeEEEEECCCCcc-----cceee--ecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeee
Confidence 996654 55689999999987542 12232 233 34567789998 5655544 45788999999 5554 3
Q ss_pred EEEccc----CC--CCeEEEEEcCCCCEEEEEe-CCCCEEEEEcCCC
Q 001391 341 KMIKEH----IG--RGIWRCLYDSLSSLLVTAG-FDSAIKVHQFQAF 380 (1088)
Q Consensus 341 ~~~~~h----~~--~~V~~l~~~~dg~~l~tg~-~Dg~I~iwd~~~~ 380 (1088)
..+..+ .. .....++|+|++++|++++ .++.|.+||+...
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 259 KSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp EEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred cccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 333222 11 1234589999999886555 4679999999653
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.73 E-value=6.8e-16 Score=173.44 Aligned_cols=262 Identities=7% Similarity=-0.014 Sum_probs=187.5
Q ss_pred CEEEEEe-CCeEEEEECCCCeeEEEEeeeCCc-ceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCC
Q 001391 36 PFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGI-RLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNS 112 (1088)
Q Consensus 36 ~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~-~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~ 112 (1088)
.+|+++. ++.|++||..+++.+..+...... .+.+++|+ |+++ .++++.. ++.|.+||+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s-------~dg~---~l~v~~~~~~~v~~~d~~~~~---- 67 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVA-------PGGR---IAYATVNKSESLVKIDLVTGE---- 67 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEEC-------TTSS---EEEEEETTTTEEEEEETTTCC----
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEc-------CCCC---EEEEEeCCCCeEEEEECCCCC----
Confidence 3677766 799999999999999888754321 37899999 7773 4545554 7899999987532
Q ss_pred CCCCccccccceeeecc-C----CCCcEEEEEEecccCCCCEEEEEE------------cCCcEEEEEcCCCceEEEecc
Q 001391 113 QYQPETCVNLSLVQSLP-R----LSHWVFDVCFLKVCNGNRSLAIGC------------SDNSIRVWDISNSSIILEVHS 175 (1088)
Q Consensus 113 ~~~~~~~~~~~~~~~l~-~----h~~~I~~v~f~p~~~d~~~lasgs------------~Dg~V~iWd~~~~~~~~~~~~ 175 (1088)
.+..+. + |...+.+++|+| ++++|+++. .++.|.+||+.+++.+..+..
T Consensus 68 -----------~~~~~~~~~~~~~~~~~~~~~~s~---dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 133 (337)
T 1pby_B 68 -----------TLGRIDLSTPEERVKSLFGAALSP---DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA 133 (337)
T ss_dssp -----------EEEEEECCBTTEEEECTTCEEECT---TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC
T ss_pred -----------eEeeEEcCCcccccccccceEECC---CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC
Confidence 232222 1 223678899999 999888886 579999999999888777654
Q ss_pred CCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCC
Q 001391 176 PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (1088)
Q Consensus 176 ~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 255 (1088)
+.. ...+.+ ++++..|+++ ++.|.+||+. +++.+..+..+
T Consensus 134 ~~~--~~~~~~---s~dg~~l~~~--~~~i~~~d~~---------------------------------~~~~~~~~~~~ 173 (337)
T 1pby_B 134 PRQ--ITMLAW---ARDGSKLYGL--GRDLHVMDPE---------------------------------AGTLVEDKPIQ 173 (337)
T ss_dssp CSS--CCCEEE---CTTSSCEEEE--SSSEEEEETT---------------------------------TTEEEEEECST
T ss_pred CCC--cceeEE---CCCCCEEEEe--CCeEEEEECC---------------------------------CCcEeeeeecc
Confidence 322 223333 6788877777 6899999998 44444444433
Q ss_pred CCCEEEEEEcCCCCEEEEEECC-C-----------------------cEEEEEcCCCcccCCCCceeeeceeeeccCcce
Q 001391 256 EGSIFRIEWSSCGSKLVSVSDD-R-----------------------SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311 (1088)
Q Consensus 256 ~~~V~~v~~sp~g~~l~s~s~D-g-----------------------~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I 311 (1088)
.. ...+.|+|+++.++..+.. + .|.+||+.+++. . . .....+...+
T Consensus 174 ~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~------~--~-~~~~~~~~~~ 243 (337)
T 1pby_B 174 SW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM------A--M-REVRIMDVFY 243 (337)
T ss_dssp TT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE------E--E-EEEEECSSCE
T ss_pred cc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc------e--E-eecCCCCCce
Confidence 20 0123678888766544332 2 468999988643 1 1 2455677788
Q ss_pred EEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 312 WDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 312 ~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
.+++|+ +.+++++ ++.|++||+ +++.+..+..+. .+.+++|+|++++|++++.++.|.+||+.+
T Consensus 244 ~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~ 310 (337)
T 1pby_B 244 FSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH--SYYSVNVSTDGSTVWLGGALGDLAAYDAET 310 (337)
T ss_dssp EEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS--CCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred eeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC--ceeeEEECCCCCEEEEEcCCCcEEEEECcC
Confidence 899998 5677777 799999999 667777766543 478999999999999999999999999954
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.73 E-value=3.8e-16 Score=195.28 Aligned_cols=295 Identities=9% Similarity=0.033 Sum_probs=173.6
Q ss_pred CEEEEEeCCeEEEEECCCCeeE-EEEeeeCC----------------cceEEEEecccccccCCCccceeeEEEEECCCE
Q 001391 36 PFLLAGSGSQVLLYDLEAGTLI-RPFQVFHG----------------IRLHGISCNFINCTEGSVSTRVTFEVALFGEKR 98 (1088)
Q Consensus 36 ~~laag~d~~I~vwd~~tg~~~-~~~~~~~~----------------~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~ 98 (1088)
+++....++ | +||+.+|+.+ ..+..+.. ..|.+++|| ||+ .++++ .++.
T Consensus 37 ~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~s-------pd~----~~~~~-~~~~ 102 (706)
T 2z3z_A 37 NYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDA-------GRG----LVVLF-TQGG 102 (706)
T ss_dssp EEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEET-------TTT----EEEEE-ETTE
T ss_pred eEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEEC-------CCC----eEEEE-ECCE
Confidence 444444456 8 9999999874 44443331 358999999 773 44444 5699
Q ss_pred EEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC-----CceEEEe
Q 001391 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN-----SSIILEV 173 (1088)
Q Consensus 99 v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~-----~~~~~~~ 173 (1088)
|++||+.... ...+..+...+.+++|+| ||+.|+++ .|+.|++||+.+ ++.....
T Consensus 103 i~~~d~~~~~----------------~~~l~~~~~~~~~~~~Sp---dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~ 162 (706)
T 2z3z_A 103 LVGFDMLARK----------------VTYLFDTNEETASLDFSP---VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVT 162 (706)
T ss_dssp EEEEETTTTE----------------EEEEECCTTCCTTCEECT---TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESC
T ss_pred EEEEECCCCc----------------eEEccCCcccccCCcCCC---CCCEEEEE-ECCeEEEEecCcccccCCCcEEec
Confidence 9999987432 223445667789999999 99999985 689999999998 7665433
Q ss_pred ccCCcee-------------EEEEeeecCCCCCcEEEEEecC-CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEe
Q 001391 174 HSPERCL-------------LYSMKLWGDNLEALRIASGTIY-NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1088)
Q Consensus 174 ~~~~~~~-------------~~s~~~~~~s~~~~~l~sg~~d-g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 239 (1088)
..+.... ..++.+ +||+..|++++.| ..+..+.+..................+....+..+.+
T Consensus 163 ~~~~~~~~~g~~~~~ee~~~~~~~~~---SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~ 239 (706)
T 2z3z_A 163 IDGTETLVYGQAVHQREFGIEKGTFW---SPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGI 239 (706)
T ss_dssp SCCBTTEEESSCCGGGCTTCCCSEEE---CTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEE
T ss_pred cCCCCCeEcccchhhhhcCCCceEEE---CCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEE
Confidence 3322211 123333 7899999988732 1111111100000000000000000111112223333
Q ss_pred cccccceeeeEEE--eCCCCCEEEEEEcCCCCEEEEEECCC-----cEEEEEcCCCcccCCCCceeeeceeeeccCc---
Q 001391 240 QDQQHTAVNLFRL--VGHEGSIFRIEWSSCGSKLVSVSDDR-----SARIWEVRAEYWKDSDSIEEVGSSVLYGHNA--- 309 (1088)
Q Consensus 240 ~~~~~~~~~~~~~--~gh~~~V~~v~~sp~g~~l~s~s~Dg-----~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~--- 309 (1088)
|+.. +++..... ..|...+..++|+|||++|++++.++ .|++||+.+++. ...+ ....+..
T Consensus 240 ~d~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~-----~~~~---~~~~~~~~~~ 310 (706)
T 2z3z_A 240 YHLA-TGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF-----VRTL---FVETDKHYVE 310 (706)
T ss_dssp EETT-TTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE-----EEEE---EEEECSSCCC
T ss_pred EECC-CCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce-----eeEE---EEccCCCeEC
Confidence 3322 23322222 25778899999999999999988776 899999988621 1111 1112222
Q ss_pred ceEEEEECC----CEEEEEeCCCcEEEEcC--CCceeEEEcccCCCCeEE-EEEcCCCCEEEEEeCC-C--CEEEEEc
Q 001391 310 RVWDCCLTD----SFIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWR-CLYDSLSSLLVTAGFD-S--AIKVHQF 377 (1088)
Q Consensus 310 ~I~~v~~~~----~~l~sg~~Dg~i~vWd~--~~~~~~~~~~h~~~~V~~-l~~~~dg~~l~tg~~D-g--~I~iwd~ 377 (1088)
.+.+++|++ .++++++.|+.+++|.+ +++.+..+..+.. .+.. ++|+|+++.|+.++.+ + .+.+|.+
T Consensus 311 ~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~-~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 387 (706)
T 2z3z_A 311 PLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEW-EVTNFAGFDPKGTRLYFESTEASPLERHFYCI 387 (706)
T ss_dssp CCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSS-CEEEEEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred ccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCe-EEEeeeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence 235677853 57888889999999987 6777888877766 5776 7999999977666554 3 2455543
No 145
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.70 E-value=6.3e-16 Score=193.88 Aligned_cols=287 Identities=9% Similarity=0.051 Sum_probs=190.6
Q ss_pred CCCCCceEEecCCCce-------ee---eeEEEEEeccCCCCCCCCEEEEEeC----------CeEEEEECCCCeeEEEE
Q 001391 1 MGKKDLSEWRLDVGQY-------LG---EISALCFVHLPSHLSSLPFLLAGSG----------SQVLLYDLEAGTLIRPF 60 (1088)
Q Consensus 1 ~~d~~i~iWdl~~g~~-------~~---~V~~v~fs~~pd~~~~~~~laag~d----------~~I~vwd~~tg~~~~~~ 60 (1088)
+.|++|++||+.+++. .. .|.+++|| || +++|+++.+ +.|++||+.+++. ..+
T Consensus 34 ~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~S--pD----g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l 106 (723)
T 1xfd_A 34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEIS--PD----REYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSL 106 (723)
T ss_dssp CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEEC--TT----SSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EEC
T ss_pred eCCCCEEEEECCCCcEEEEeccccccccccceEEEC--CC----CCEEEEEecCccceeecceeeEEEEECCCCce-Eec
Confidence 3688999999999871 11 38999999 99 899998863 6899999999876 333
Q ss_pred eeeC--CcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCC-------
Q 001391 61 QVFH--GIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRL------- 131 (1088)
Q Consensus 61 ~~~~--~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h------- 131 (1088)
.... ...+..++|| ||| ..|+...++.|.+|++.... .......+
T Consensus 107 ~~~~~~~~~~~~~~~S-------PdG----~~la~~~~~~i~~~~~~~g~---------------~~~~~~~~~~~~~~~ 160 (723)
T 1xfd_A 107 DPPEVSNAKLQYAGWG-------PKG----QQLIFIFENNIYYCAHVGKQ---------------AIRVVSTGKEGVIYN 160 (723)
T ss_dssp CCTTCCSCCCSBCCBC-------SST----TCEEEEETTEEEEESSSSSC---------------CEEEECCCBTTTEEE
T ss_pred cCCccccccccccEEC-------CCC----CEEEEEECCeEEEEECCCCc---------------eEEEecCCCCCceEC
Confidence 3221 2247889999 888 56777777999999987533 11111222
Q ss_pred --CC---------cEEEEEEecccCCCCEEEEEEcCC----------------------------------cEEEEEcCC
Q 001391 132 --SH---------WVFDVCFLKVCNGNRSLAIGCSDN----------------------------------SIRVWDISN 166 (1088)
Q Consensus 132 --~~---------~I~~v~f~p~~~d~~~lasgs~Dg----------------------------------~V~iWd~~~ 166 (1088)
.+ .+.+++|+| ||+.|++++.|+ .|++||+.+
T Consensus 161 g~~~~v~~ee~~~~~~~~~~Sp---Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~ 237 (723)
T 1xfd_A 161 GLSDWLYEEEILKTHIAHWWSP---DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG 237 (723)
T ss_dssp EECCHHHHHTTSSSSEEEEECT---TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS
T ss_pred cccceeEEEEeccCcceEEECC---CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC
Confidence 22 237899999 999999987653 799999998
Q ss_pred CceEEEeccCC-----ceeEEEEeeecCCCCCcEEEEEec----CCeEEEEEeccCccccCCCCCCCccCCCCCCCCcee
Q 001391 167 SSIILEVHSPE-----RCLLYSMKLWGDNLEALRIASGTI----YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCF 237 (1088)
Q Consensus 167 ~~~~~~~~~~~-----~~~~~s~~~~~~s~~~~~l~sg~~----dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 237 (1088)
++....+..+. ...+.++.+ +||+.++++... +..|.+||+.
T Consensus 238 ~~~~~~l~~~~~~~~~~~~~~~~~~---SpDg~~l~~~~~~~~~~~~i~~~d~~-------------------------- 288 (723)
T 1xfd_A 238 PTHDLEMMPPDDPRMREYYITMVKW---ATSTKVAVTWLNRAQNVSILTLCDAT-------------------------- 288 (723)
T ss_dssp SCCCEECCCCCCGGGSSEEEEEEEE---SSSSEEEEEEEETTSCEEEEEEEETT--------------------------
T ss_pred CceeEEeeCCccCCCccceeEEEEE---eCCCeEEEEEEcCCCCeEEEEEEeCC--------------------------
Confidence 87656665431 344556665 788988877643 3578999987
Q ss_pred EecccccceeeeEEEe-CCCCCEE----EEEEcCCCCEEEE--EECCC------cEEEEE-cCCCcccCCCCceeeecee
Q 001391 238 KLQDQQHTAVNLFRLV-GHEGSIF----RIEWSSCGSKLVS--VSDDR------SARIWE-VRAEYWKDSDSIEEVGSSV 303 (1088)
Q Consensus 238 ~~~~~~~~~~~~~~~~-gh~~~V~----~v~~sp~g~~l~s--~s~Dg------~v~iWd-~~~~~~~~~~~~~~i~~~~ 303 (1088)
+++....+. .|.+.+. .++|+|||+.|+. +..++ .|.+|| ...+.. .... .
T Consensus 289 -------~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~------~~~~--~ 353 (723)
T 1xfd_A 289 -------TGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN------DNIQ--S 353 (723)
T ss_dssp -------TCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS------CCCC--B
T ss_pred -------CCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCc------ccee--E
Confidence 444333333 2444443 7899999997764 45677 466666 333220 0011 3
Q ss_pred eeccCcceEE-EEEC--CCEEEEEeCC---CcEEEEcC--CCc-eeEEEcc---cCCCCeEEEEEcCCCCEEEEEeC
Q 001391 304 LYGHNARVWD-CCLT--DSFIITAGED---CTCRVWGS--DGK-QLKMIKE---HIGRGIWRCLYDSLSSLLVTAGF 368 (1088)
Q Consensus 304 ~~~h~~~I~~-v~~~--~~~l~sg~~D---g~i~vWd~--~~~-~~~~~~~---h~~~~V~~l~~~~dg~~l~tg~~ 368 (1088)
+..+...+.. ++|+ +..|+..+.+ +.+++|++ .+. ....+.. |.. .+..++|+|||++|+....
T Consensus 354 l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 354 ITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENC-TYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp SCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSC-CCCEEEECTTSSEEEEECC
T ss_pred eecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCC-CeEEEEECCCCCEEEEEcc
Confidence 3333334444 6887 5677655544 78999998 332 3344443 444 5889999999998776543
No 146
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.70 E-value=1.1e-15 Score=171.68 Aligned_cols=256 Identities=8% Similarity=0.014 Sum_probs=181.6
Q ss_pred CCCCceEEecCCCcee------e---eeEEEEEeccCCCCCCCCEEEE-Ee-CCeEEEEECCCCeeEEEEeeeC----Cc
Q 001391 2 GKKDLSEWRLDVGQYL------G---EISALCFVHLPSHLSSLPFLLA-GS-GSQVLLYDLEAGTLIRPFQVFH----GI 66 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~~~------~---~V~~v~fs~~pd~~~~~~~laa-g~-d~~I~vwd~~tg~~~~~~~~~~----~~ 66 (1088)
.|++|++||+.+++.. + .+.+++|+ |+ ++++++ +. ++.|.+||+.+++.+..+.... +.
T Consensus 9 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s--~d----g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 82 (337)
T 1pby_B 9 RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVA--PG----GRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEEC--TT----SSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred CCCeEEEEECCCCcEEEEEEcCCCCCCccceEEc--CC----CCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence 5789999999998722 2 47789999 99 766655 44 5899999999999988877533 12
Q ss_pred ceEEEEecccccccCCCccceeeEEEEE------------CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCc
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALF------------GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW 134 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~------------gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 134 (1088)
.+.+++|+ |+|+ .++++. .++.|.+||+... +.+..+.. ...
T Consensus 83 ~~~~~~~s-------~dg~---~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------------~~~~~~~~-~~~ 136 (337)
T 1pby_B 83 SLFGAALS-------PDGK---TLAIYESPVRLELTHFEVQPTRVALYDAETL---------------SRRKAFEA-PRQ 136 (337)
T ss_dssp CTTCEEEC-------TTSS---EEEEEEEEEEECSSCEEECCCEEEEEETTTT---------------EEEEEEEC-CSS
T ss_pred cccceEEC-------CCCC---EEEEEecccccccccccccCceEEEEECCCC---------------cEEEEEeC-CCC
Confidence 57889999 7873 344443 4799999998742 33333333 345
Q ss_pred EEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCC--ceeEEEEeeecCCCCCcEEEEEecC-C--------
Q 001391 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE--RCLLYSMKLWGDNLEALRIASGTIY-N-------- 203 (1088)
Q Consensus 135 I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~--~~~~~s~~~~~~s~~~~~l~sg~~d-g-------- 203 (1088)
+.+++|+| ++++|+++ ++.|.+||+.+++....+..+. ... . .++++..++..+.. +
T Consensus 137 ~~~~~~s~---dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~----~---~s~dg~~l~~~~~~~~~~~~~~~~ 204 (337)
T 1pby_B 137 ITMLAWAR---DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAET----Y---AQPDVLAVWNQHESSGVMATPFYT 204 (337)
T ss_dssp CCCEEECT---TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTT----B---CCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred cceeEECC---CCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCc----e---eCCCccEEeeeccCCCceeeeeec
Confidence 78899999 99988887 6899999999998877765433 221 1 24566655443322 2
Q ss_pred ---------------eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee-eEEEeCCCCCEEEEEEcCC
Q 001391 204 ---------------EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN-LFRLVGHEGSIFRIEWSSC 267 (1088)
Q Consensus 204 ---------------~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~gh~~~V~~v~~sp~ 267 (1088)
.|.+||+. +++. ...+..+...+.+++|+|+
T Consensus 205 ~~~~~~~~~~~~~~~~v~~~d~~---------------------------------~~~~~~~~~~~~~~~~~~~~~s~d 251 (337)
T 1pby_B 205 ARKDIDPADPTAYRTGLLTMDLE---------------------------------TGEMAMREVRIMDVFYFSTAVNPA 251 (337)
T ss_dssp EBTTSCTTSGGGEEEEEEEEETT---------------------------------TCCEEEEEEEECSSCEEEEEECTT
T ss_pred cccccccccccccccceEEEeCC---------------------------------CCCceEeecCCCCCceeeEEECCC
Confidence 35666665 2222 3344567778999999999
Q ss_pred CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEc
Q 001391 268 GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIK 344 (1088)
Q Consensus 268 g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~ 344 (1088)
+++++++ ++.|++||+.+++ .+. .+. ....+.+++|+ +.++++++.++.|++||+ +++.+..+.
T Consensus 252 g~~l~~~--~~~v~~~d~~~~~--------~~~--~~~-~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 252 KTRAFGA--YNVLESFDLEKNA--------SIK--RVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp SSEEEEE--ESEEEEEETTTTE--------EEE--EEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEe--CCeEEEEECCCCc--------Ccc--eec-CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 9999888 6899999998753 222 222 23457889998 578888899999999999 777777775
Q ss_pred ccC
Q 001391 345 EHI 347 (1088)
Q Consensus 345 ~h~ 347 (1088)
.+.
T Consensus 319 ~~~ 321 (337)
T 1pby_B 319 LPG 321 (337)
T ss_dssp CGG
T ss_pred cCC
Confidence 543
No 147
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.70 E-value=5.2e-15 Score=166.17 Aligned_cols=265 Identities=10% Similarity=0.060 Sum_probs=175.3
Q ss_pred CCCCceEEecCCCce-------eeeeEEEEEeccCCCCCCCCEEEEEe--CCeEEEEECCCCee-EEEEeeeCCcceEEE
Q 001391 2 GKKDLSEWRLDVGQY-------LGEISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTL-IRPFQVFHGIRLHGI 71 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~~-------~~~V~~v~fs~~pd~~~~~~~laag~--d~~I~vwd~~tg~~-~~~~~~~~~~~V~~i 71 (1088)
.++.|++||+.+++. ..++ +++|+ |+ +++|+++. ++.|.+||..+++. ...+..+.. ...++
T Consensus 18 ~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s--~d----g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~ 89 (331)
T 3u4y_A 18 HLRRISFFSTDTLEILNQITLGYDFV-DTAIT--SD----CSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQS-SMADV 89 (331)
T ss_dssp GGTEEEEEETTTCCEEEEEECCCCEE-EEEEC--SS----SCEEEEEESTTCEEEEEECSSSSCEEEEEEECSS-CCCCE
T ss_pred CCCeEEEEeCcccceeeeEEccCCcc-eEEEc--CC----CCEEEEEeCCCCeEEEEECCCCceeEEecccCCC-Cccce
Confidence 478899999999882 2345 99999 99 77666654 58999999999987 666665443 44559
Q ss_pred EecccccccCCCccceeeEEEEECCC----EEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCC
Q 001391 72 SCNFINCTEGSVSTRVTFEVALFGEK----RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN 147 (1088)
Q Consensus 72 ~~s~~~~~~~~d~~~~~~~la~~gd~----~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~ 147 (1088)
+|+ |++ ..+++..+. .|.+||+... +.+..+.. .....+++|+| ++
T Consensus 90 ~~s-------~dg----~~l~~~~~~~~~~~i~v~d~~~~---------------~~~~~~~~-~~~~~~~~~sp---dg 139 (331)
T 3u4y_A 90 DIT-------PDD----QFAVTVTGLNHPFNMQSYSFLKN---------------KFISTIPI-PYDAVGIAISP---NG 139 (331)
T ss_dssp EEC-------TTS----SEEEECCCSSSSCEEEEEETTTT---------------EEEEEEEC-CTTEEEEEECT---TS
T ss_pred EEC-------CCC----CEEEEecCCCCcccEEEEECCCC---------------CeEEEEEC-CCCccceEECC---CC
Confidence 999 887 444454433 9999998753 33444443 34568999999 99
Q ss_pred CEEEE-EEcCCc-EEEEEcCCCceEEEec---cCCceeEEEEeeecCCCCCcEE-EEEecCCeEEEEEeccCccccCCCC
Q 001391 148 RSLAI-GCSDNS-IRVWDISNSSIILEVH---SPERCLLYSMKLWGDNLEALRI-ASGTIYNEIIVWKVDWEHVAPLLNS 221 (1088)
Q Consensus 148 ~~las-gs~Dg~-V~iWd~~~~~~~~~~~---~~~~~~~~s~~~~~~s~~~~~l-~sg~~dg~I~vwd~~~~~~~~~~~~ 221 (1088)
++|++ ...++. |.+|++.....+.... .........+.+ ++++..+ +++..++.|.+||+.
T Consensus 140 ~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---spdg~~l~v~~~~~~~v~v~d~~---------- 206 (331)
T 3u4y_A 140 NGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITF---TPDGNFAFVANLIGNSIGILETQ---------- 206 (331)
T ss_dssp SCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEE---CTTSSEEEEEETTTTEEEEEECS----------
T ss_pred CEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEE---CCCCCEEEEEeCCCCeEEEEECC----------
Confidence 85554 455688 9999997644332110 111222445555 6888755 455578999999998
Q ss_pred CCCccCCCCCCCCceeEecccccceee---eEEEeCCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCcccCCCCce
Q 001391 222 PEGNHAHGSSSDFKCFKLQDQQHTAVN---LFRLVGHEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIE 297 (1088)
Q Consensus 222 ~~~~s~~~~~~~~~~~~~~~~~~~~~~---~~~~~gh~~~V~~v~~sp~g~~l~s~s-~Dg~v~iWd~~~~~~~~~~~~~ 297 (1088)
+++. +..+.. ...+..++|+|+|++++.++ .++.|.+||+.+++. .
T Consensus 207 -----------------------~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~------~ 256 (331)
T 3u4y_A 207 -----------------------NPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL------S 256 (331)
T ss_dssp -----------------------STTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE------E
T ss_pred -----------------------CCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce------e
Confidence 3333 555553 36678999999999776554 578899999988643 1
Q ss_pred eeece--eeeccCcc---eEEEEEC--CCEEEE-EeCCCcEEEEcCCCceeEEEcccC
Q 001391 298 EVGSS--VLYGHNAR---VWDCCLT--DSFIIT-AGEDCTCRVWGSDGKQLKMIKEHI 347 (1088)
Q Consensus 298 ~i~~~--~~~~h~~~---I~~v~~~--~~~l~s-g~~Dg~i~vWd~~~~~~~~~~~h~ 347 (1088)
.+... .+..+... ...++|+ +.+|+. +..++.|.+||+.++.+..+....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~ 314 (331)
T 3u4y_A 257 FVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGYVAGIE 314 (331)
T ss_dssp EEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEECTTCC
T ss_pred eecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcccceeccc
Confidence 22210 10011222 2457888 566654 455679999999777666655443
No 148
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.69 E-value=5e-14 Score=159.41 Aligned_cols=262 Identities=10% Similarity=0.088 Sum_probs=171.4
Q ss_pred CCCceEEecC--CCc--------eeeeeEEEEEeccCCCCCCCCEEEEEe---CCeEEEEECCCCe--eEEEEeeeCCcc
Q 001391 3 KKDLSEWRLD--VGQ--------YLGEISALCFVHLPSHLSSLPFLLAGS---GSQVLLYDLEAGT--LIRPFQVFHGIR 67 (1088)
Q Consensus 3 d~~i~iWdl~--~g~--------~~~~V~~v~fs~~pd~~~~~~~laag~---d~~I~vwd~~tg~--~~~~~~~~~~~~ 67 (1088)
++.|.+|++. +++ +...+.+++|+ || +++++++. ++.|++||+.+++ .+..+..+. ..
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~s--pd----g~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~-~~ 87 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALS--AK----DCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPG-TP 87 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEEC--TT----CEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEES-CC
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEc--cC----CeEEEEEecCCCceEEEEEecCCcEEEeeeeecCC-CC
Confidence 4557777654 454 22446789999 99 77555554 3899999998776 444444433 36
Q ss_pred eEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeecc---------CCCCcEEE
Q 001391 68 LHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP---------RLSHWVFD 137 (1088)
Q Consensus 68 V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~---------~h~~~I~~ 137 (1088)
+..++|+ |||+ .++++. .++.|++|++.... ..+.+..+. .+...+.+
T Consensus 88 p~~~a~s-------pdg~---~l~~~~~~~~~v~v~~~~~~g------------~~~~~~~~~~~~~~p~~~~~~~~~~~ 145 (347)
T 3hfq_A 88 PAYVAVD-------EARQ---LVYSANYHKGTAEVMKIAADG------------ALTLTDTVQHSGHGPRPEQDGSHIHY 145 (347)
T ss_dssp CSEEEEE-------TTTT---EEEEEETTTTEEEEEEECTTS------------CEEEEEEEECCCCCSSTTCSSCCEEE
T ss_pred CEEEEEC-------CCCC---EEEEEeCCCCEEEEEEeCCCC------------CeeecceeecCCCCCCccccCCCceE
Confidence 8999999 8873 455555 47999999997422 022222221 12346899
Q ss_pred EEEecccCCCCEEEEEEcCCcEEEEEcC-CCceEE--EeccCCceeEEEEeeecCCCCCcEEEE-EecCCeEEEEEeccC
Q 001391 138 VCFLKVCNGNRSLAIGCSDNSIRVWDIS-NSSIIL--EVHSPERCLLYSMKLWGDNLEALRIAS-GTIYNEIIVWKVDWE 213 (1088)
Q Consensus 138 v~f~p~~~d~~~lasgs~Dg~V~iWd~~-~~~~~~--~~~~~~~~~~~s~~~~~~s~~~~~l~s-g~~dg~I~vwd~~~~ 213 (1088)
++|+| +++++++...++.|++|++. +++... .+..+.......+++ +|++.++++ +..++.|.+|++...
T Consensus 146 ~~~sp---dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~---spdg~~l~v~~~~~~~v~v~~~~~~ 219 (347)
T 3hfq_A 146 TDLTP---DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF---SPDGQYAFLAGELSSQIASLKYDTQ 219 (347)
T ss_dssp EEECT---TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE---CTTSSEEEEEETTTTEEEEEEEETT
T ss_pred EEECC---CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE---CCCCCEEEEEeCCCCEEEEEEecCC
Confidence 99999 99966666678899999998 554332 222233323344555 688885554 567899999998710
Q ss_pred ccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCC------CCEEEEEEcCCCCEE-EEEECCCcEEEEEcC
Q 001391 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE------GSIFRIEWSSCGSKL-VSVSDDRSARIWEVR 286 (1088)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~------~~V~~v~~sp~g~~l-~s~s~Dg~v~iWd~~ 286 (1088)
. .....+..+.... ..+..++|+|+|++| ++...++.|.+|++.
T Consensus 220 ~-----------------------------g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 220 T-----------------------------GAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp T-----------------------------TEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred C-----------------------------CceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 0 0112222333222 458899999999987 566778999999997
Q ss_pred CCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCC-CcEEEEcC
Q 001391 287 AEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED-CTCRVWGS 335 (1088)
Q Consensus 287 ~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~D-g~i~vWd~ 335 (1088)
.... .+.+. .+..+...+..++|+ +.+|++++.+ +.+.+|++
T Consensus 271 ~~g~-----~~~~~--~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 271 ADGH-----LTLIQ--QISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp GGGC-----EEEEE--EEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCc-----EEEeE--EEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence 4311 23333 455566678899998 5677777754 89999954
No 149
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.68 E-value=3.5e-15 Score=181.98 Aligned_cols=266 Identities=12% Similarity=0.012 Sum_probs=187.8
Q ss_pred eeeeEEEEEeccCCCCCCCCEEEEEe--CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 17 LGEISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 17 ~~~V~~v~fs~~pd~~~~~~~laag~--d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
..+|.+++|+ || |++||.++ +++++||++.+++.. .+..++...+..++|+ || + .++++.
T Consensus 21 ~~~~~~~~~~--~D----G~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~s-------pd-~---~l~~~~ 82 (582)
T 3o4h_A 21 AVEKYSLQGV--VD----GDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYG-------VG-R---VILVRD 82 (582)
T ss_dssp HSCEEEEEEE--ET----TTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTT-------CS-E---EEEEEE
T ss_pred ccchheeecC--CC----CCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCC-------CC-e---EEEEec
Confidence 4579999999 99 88998865 799999999776654 4444443468999999 77 2 444443
Q ss_pred C---CCEEEEEEecc--CCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCC--EEEEEEcCCcEEEEEcCCC
Q 001391 95 G---EKRVKLFELNF--ELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNR--SLAIGCSDNSIRVWDISNS 167 (1088)
Q Consensus 95 g---d~~v~iw~l~~--~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~--~lasgs~Dg~V~iWd~~~~ 167 (1088)
. +...+||.+.. .. ... .+..+. .+...+|+| +++ .+++++ ++.+.+||+.++
T Consensus 83 ~~~g~~~~~l~~~~~~~~g------------~~~---~l~~~~-~~~~~~~s~---dg~~~~~~s~~-~~~~~l~d~~~g 142 (582)
T 3o4h_A 83 VSKGAEQHALFKVNTSRPG------------EEQ---RLEAVK-PMRILSGVD---TGEAVVFTGAT-EDRVALYALDGG 142 (582)
T ss_dssp CSTTSCCEEEEEEETTSTT------------CCE---ECTTSC-SBEEEEEEE---CSSCEEEEEEC-SSCEEEEEEETT
T ss_pred cCCCCcceEEEEEeccCCC------------ccc---cccCCC-CceeeeeCC---CCCeEEEEecC-CCCceEEEccCC
Confidence 2 46678887765 22 011 121111 233568888 765 444444 445559999988
Q ss_pred ceEEEeccCCceeEEEEeeecCCCCCcEEEEEecC----CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccc
Q 001391 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY----NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (1088)
Q Consensus 168 ~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d----g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 243 (1088)
+.......+. +++.+ +|||..|++++.+ +.|++||+.
T Consensus 143 ~~~~l~~~~~----~~~~~---spDG~~la~~~~~~~~~~~i~~~d~~-------------------------------- 183 (582)
T 3o4h_A 143 GLRELARLPG----FGFVS---DIRGDLIAGLGFFGGGRVSLFTSNLS-------------------------------- 183 (582)
T ss_dssp EEEEEEEESS----CEEEE---EEETTEEEEEEEEETTEEEEEEEETT--------------------------------
T ss_pred cEEEeecCCC----ceEEE---CCCCCEEEEEEEcCCCCeEEEEEcCC--------------------------------
Confidence 7655444443 34443 5899999988777 789999987
Q ss_pred cceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCC--cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEE------
Q 001391 244 HTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR--SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC------ 315 (1088)
Q Consensus 244 ~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg--~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~------ 315 (1088)
+++ ...+.+|.+.+..++|+|||++|+++..++ .|++||+.+++. . .+.+|...+..++
T Consensus 184 -~g~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~------~-----~~~~~~~~~~~~~~~~~~~ 250 (582)
T 3o4h_A 184 -SGG-LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSV------E-----DLELPSKDFSSYRPTAITW 250 (582)
T ss_dssp -TCC-CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCE------E-----ECCCSCSHHHHHCCSEEEE
T ss_pred -CCC-ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcE------E-----EccCCCcChhhhhhccccc
Confidence 333 346788999999999999999999888888 899999988643 1 3345555555555
Q ss_pred --EC--CCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCC---EEEEEcC
Q 001391 316 --LT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSA---IKVHQFQ 378 (1088)
Q Consensus 316 --~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~---I~iwd~~ 378 (1088)
|+ +.++++++.|+++++|++ |+... .+.+ .|.+++|+ +++++++++.+.+ +.+|+..
T Consensus 251 ~~~spdg~~~~~~~~~g~~~l~~~-g~~~~---~~~~-~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 251 LGYLPDGRLAVVARREGRSAVFID-GERVE---APQG-NHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEECTTSCEEEEEEETTEEEEEET-TEEEC---CCSS-EEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred eeEcCCCcEEEEEEcCCcEEEEEE-CCeec---cCCC-ceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence 88 568899999999999999 76554 3334 68999999 9999888887754 4555543
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.68 E-value=3.2e-14 Score=161.03 Aligned_cols=268 Identities=9% Similarity=-0.009 Sum_probs=176.2
Q ss_pred CeEEEEEC--CCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC---CCEEEEEEeccCCCCCCCCCCcc
Q 001391 44 SQVLLYDL--EAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPET 118 (1088)
Q Consensus 44 ~~I~vwd~--~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g---d~~v~iw~l~~~~~~~~~~~~~~ 118 (1088)
+.|.+|++ .+++....-...+...+..++|+ ||| .++++.. ++.|.+|++....
T Consensus 16 ~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~s-------pdg----~l~~~~~~~~~~~v~~~~~~~g~---------- 74 (347)
T 3hfq_A 16 QGIYQGTLDTTAKTLTNDGLLAATQNPTYLALS-------AKD----CLYSVDKEDDEGGIAAWQIDGQT---------- 74 (347)
T ss_dssp CEEEEEEEETTTTEEEEEEEEEECSCCCCEEEC-------TTC----EEEEEEEETTEEEEEEEEEETTE----------
T ss_pred CCEEEEEEcCCCCeEEEeeeeeccCCcceEEEc-------cCC----eEEEEEecCCCceEEEEEecCCc----------
Confidence 56666665 46665432222223357889999 887 4444443 5899999996432
Q ss_pred ccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE-cCCcEEEEEcCC-Cc--eEEEeccC--------CceeEEEEee
Q 001391 119 CVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISN-SS--IILEVHSP--------ERCLLYSMKL 186 (1088)
Q Consensus 119 ~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs-~Dg~V~iWd~~~-~~--~~~~~~~~--------~~~~~~s~~~ 186 (1088)
.+.+..+..+...+..++|+| ++++|++++ .++.|++|++.. +. .+..+... .......+++
T Consensus 75 ---~~~~~~~~~~~~~p~~~a~sp---dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 148 (347)
T 3hfq_A 75 ---AHKLNTVVAPGTPPAYVAVDE---ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDL 148 (347)
T ss_dssp ---EEEEEEEEEESCCCSEEEEET---TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEE
T ss_pred ---EEEeeeeecCCCCCEEEEECC---CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEE
Confidence 445666566778899999999 999888887 689999999963 32 23333211 1122445555
Q ss_pred ecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCC-CCCEEEEEEc
Q 001391 187 WGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH-EGSIFRIEWS 265 (1088)
Q Consensus 187 ~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh-~~~V~~v~~s 265 (1088)
+|++.+++++..++.|.+|++.... .......+..+ ...+..++|+
T Consensus 149 ---spdg~l~v~~~~~~~v~~~~~~~~g------------------------------~~~~~~~~~~~~g~~p~~~~~s 195 (347)
T 3hfq_A 149 ---TPDNRLAVIDLGSDKVYVYNVSDAG------------------------------QLSEQSVLTMEAGFGPRHLVFS 195 (347)
T ss_dssp ---CTTSCEEEEETTTTEEEEEEECTTS------------------------------CEEEEEEEECCTTCCEEEEEEC
T ss_pred ---CCCCcEEEEeCCCCEEEEEEECCCC------------------------------cEEEeeeEEcCCCCCCceEEEC
Confidence 6788877777778999999987100 11122222333 2367889999
Q ss_pred CCCCEEEE-EECCCcEEEEEcCCCcccCCCCceeeeceeeeccC------cceEEEEEC--CCEE-EEEeCCCcEEEEcC
Q 001391 266 SCGSKLVS-VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN------ARVWDCCLT--DSFI-ITAGEDCTCRVWGS 335 (1088)
Q Consensus 266 p~g~~l~s-~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~------~~I~~v~~~--~~~l-~sg~~Dg~i~vWd~ 335 (1088)
|+|+++++ ...++.|++|++..... ....+. ...... ..+..++|+ +.+| ++...++.|.+|++
T Consensus 196 pdg~~l~v~~~~~~~v~v~~~~~~~g----~~~~~~--~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~ 269 (347)
T 3hfq_A 196 PDGQYAFLAGELSSQIASLKYDTQTG----AFTQLG--IVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAV 269 (347)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTT----EEEEEE--EEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEE
T ss_pred CCCCEEEEEeCCCCEEEEEEecCCCC----ceEEee--eeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEE
Confidence 99996655 56788999999875211 012221 222211 458889998 5555 56667899999998
Q ss_pred C--C--ceeEEEcccCCCCeEEEEEcCCCCEEEEEeCC-CCEEEEEcC
Q 001391 336 D--G--KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD-SAIKVHQFQ 378 (1088)
Q Consensus 336 ~--~--~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~D-g~I~iwd~~ 378 (1088)
+ + +.+..+..+.. .+..++|+|||++|++++.+ +.|.+|+++
T Consensus 270 ~~~g~~~~~~~~~~~~~-~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 270 TADGHLTLIQQISTEGD-FPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp CGGGCEEEEEEEECSSS-CCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCCcEEEeEEEecCCC-CcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 4 3 34445555544 58899999999988888765 899999764
No 151
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.65 E-value=4.5e-14 Score=159.79 Aligned_cols=243 Identities=9% Similarity=0.042 Sum_probs=176.1
Q ss_pred CCCceEEecCCCcee------eeeEEEEEeccCCCCCCCCEEEEEe--CCeEEEEECCCCeeEEEEeeeCCc--------
Q 001391 3 KKDLSEWRLDVGQYL------GEISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGI-------- 66 (1088)
Q Consensus 3 d~~i~iWdl~~g~~~------~~V~~v~fs~~pd~~~~~~~laag~--d~~I~vwd~~tg~~~~~~~~~~~~-------- 66 (1088)
++.|.+||+.+++.. ..+.+++|+ |+ +++++++. ++.|.+||..+++.+..+..+...
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s--~d----g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 141 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHNDLKPFGATIN--NT----TQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPL 141 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSEEEE--TT----TTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCC
T ss_pred CccEEEEcCCCCeEEEEEecCCCcceEEEC--CC----CCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCC
Confidence 678999999998732 346789999 98 77665544 499999999999999888865432
Q ss_pred ceEEEEecccccccCCCccceeeEEEEE-C-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEeccc
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALF-G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~-g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~ 144 (1088)
.+.+++|+ |+++ .++++. + ++.|.+||+.. .+.+..+..+...+.+++|+|
T Consensus 142 ~~~~~~~s-------~dg~---~l~~~~~~~~~~i~~~d~~~---------------~~~~~~~~~~~~~~~~~~~s~-- 194 (353)
T 3vgz_A 142 QPRELVAD-------DATN---TVYISGIGKESVIWVVDGGN---------------IKLKTAIQNTGKMSTGLALDS-- 194 (353)
T ss_dssp EEEEEEEE-------TTTT---EEEEEEESSSCEEEEEETTT---------------TEEEEEECCCCTTCCCCEEET--
T ss_pred CCceEEEC-------CCCC---EEEEEecCCCceEEEEcCCC---------------CceEEEecCCCCccceEEECC--
Confidence 27889999 7773 444444 3 78899999874 345555655666788999999
Q ss_pred CCCCEEEEEEcCCcEEEEEcCCCceEEEeccC---CceeEEEEeeecCCCCCcEEEEEe-cCCeEEEEEeccCccccCCC
Q 001391 145 NGNRSLAIGCSDNSIRVWDISNSSIILEVHSP---ERCLLYSMKLWGDNLEALRIASGT-IYNEIIVWKVDWEHVAPLLN 220 (1088)
Q Consensus 145 ~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~---~~~~~~s~~~~~~s~~~~~l~sg~-~dg~I~vwd~~~~~~~~~~~ 220 (1088)
++++|++++.++.|.+||+.+++.+..+..+ .......+++ ++++..++.++ .++.|.+||..
T Consensus 195 -dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---s~dg~~l~~~~~~~~~v~~~d~~--------- 261 (353)
T 3vgz_A 195 -EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISL---DTARQRAFITDSKAAEVLVVDTR--------- 261 (353)
T ss_dssp -TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEE---ETTTTEEEEEESSSSEEEEEETT---------
T ss_pred -CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEE---CCCCCEEEEEeCCCCEEEEEECC---------
Confidence 9999999999999999999999888776542 2223445555 56777666655 45999999998
Q ss_pred CCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCcccCCCCceee
Q 001391 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIEEV 299 (1088)
Q Consensus 221 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s-~Dg~v~iWd~~~~~~~~~~~~~~i 299 (1088)
+++.+..+..+.. ..++|+|++++++.++ .++.|.+||..+++. +
T Consensus 262 ------------------------~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~--------~ 307 (353)
T 3vgz_A 262 ------------------------NGNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV--------V 307 (353)
T ss_dssp ------------------------TCCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTTTEE--------E
T ss_pred ------------------------CCcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCCCeE--------E
Confidence 4555555554332 5799999999665555 789999999988532 3
Q ss_pred eceeeeccCcceEEEEEC--CCEEEEEeCCC
Q 001391 300 GSSVLYGHNARVWDCCLT--DSFIITAGEDC 328 (1088)
Q Consensus 300 ~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg 328 (1088)
. .+ .....+.+++|+ +++++.+..++
T Consensus 308 ~--~~-~~~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 308 K--TF-DTPTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp E--EE-ECCSEEEEEEECTTSCEEEEEEECC
T ss_pred E--EE-ecCCCCCeEEEcCCCCEEEEEEccc
Confidence 2 22 223467889998 56566655553
No 152
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.63 E-value=5.7e-15 Score=185.07 Aligned_cols=305 Identities=8% Similarity=-0.002 Sum_probs=189.2
Q ss_pred EEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCC--cceEEEEecccccccCCCccceeeEEEEE-C--
Q 001391 21 SALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHG--IRLHGISCNFINCTEGSVSTRVTFEVALF-G-- 95 (1088)
Q Consensus 21 ~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~--~~V~~i~~s~~~~~~~~d~~~~~~~la~~-g-- 95 (1088)
..++|+ || +++++++.+++|++||+.+++....+..+.. ..|..++|| ||| ..|+.. .
T Consensus 19 ~~~~~s--~d----g~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~S-------pDg----~~la~~~~~~ 81 (719)
T 1z68_A 19 FFPNWI--SG----QEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLS-------PDR----QFVYLESDYS 81 (719)
T ss_dssp CCCEES--SS----SEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEEC-------TTS----SEEEEEEEEE
T ss_pred CccEEC--CC----CeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEEC-------CCC----CeEEEEecCc
Confidence 378999 99 7777777789999999999988766654322 138999999 888 445443 3
Q ss_pred -------CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc
Q 001391 96 -------EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (1088)
Q Consensus 96 -------d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~ 168 (1088)
++.|++||+.... ......+ ...+.+++|+| ||+.||.+. |+.|++|++.+++
T Consensus 82 ~~~~~s~~~~i~~~d~~~g~-------------~~~~~~l---~~~~~~~~~SP---DG~~la~~~-~~~i~~~~~~~g~ 141 (719)
T 1z68_A 82 KLWRYSYTATYYIYDLSNGE-------------FVRGNEL---PRPIQYLCWSP---VGSKLAYVY-QNNIYLKQRPGDP 141 (719)
T ss_dssp ECSSSCEEEEEEEEETTTTE-------------ECCSSCC---CSSBCCEEECS---STTCEEEEE-TTEEEEESSTTSC
T ss_pred eeEEeecceEEEEEECCCCc-------------cccceec---CcccccceECC---CCCEEEEEE-CCeEEEEeCCCCC
Confidence 4899999998543 1000112 25688999999 999999885 8899999998887
Q ss_pred eEEEeccCCceeE-----------------EEEeeecCCCCCcEEEEEecC-CeEEEEEeccCccccCCC-CCCCccCCC
Q 001391 169 IILEVHSPERCLL-----------------YSMKLWGDNLEALRIASGTIY-NEIIVWKVDWEHVAPLLN-SPEGNHAHG 229 (1088)
Q Consensus 169 ~~~~~~~~~~~~~-----------------~s~~~~~~s~~~~~l~sg~~d-g~I~vwd~~~~~~~~~~~-~~~~~s~~~ 229 (1088)
.......+....+ .++.+ +|||..|+.++.| +.+.+|.+.......... ........|
T Consensus 142 ~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~w---SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g 218 (719)
T 1z68_A 142 PFQITFNGRENKIFNGIPDWVYEEEMLATKYALWW---SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG 218 (719)
T ss_dssp CEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEE---CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTT
T ss_pred cEEEecCCCcCCeEcccccceeeeecccCcccEEE---CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCC
Confidence 6543322211111 13444 7999999988765 444444332110000000 000111112
Q ss_pred CCCCCceeEecccccceeee--------EEEeCCCCCEEEEEEcCCCCEEEEEECC----CcEEEEE----cCCCcccCC
Q 001391 230 SSSDFKCFKLQDQQHTAVNL--------FRLVGHEGSIFRIEWSSCGSKLVSVSDD----RSARIWE----VRAEYWKDS 293 (1088)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~--------~~~~gh~~~V~~v~~sp~g~~l~s~s~D----g~v~iWd----~~~~~~~~~ 293 (1088)
.......+.+|+.. ++... ..+.+|...+..++|+||++.+++.... ..|++|| ..+++.
T Consensus 219 ~~~~~~~l~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~--- 294 (719)
T 1z68_A 219 AKNPVVRIFIIDTT-YPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC--- 294 (719)
T ss_dssp SCCCEEEEEEEESS-CHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC---
T ss_pred CCCCeeEEEEEECC-CCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce---
Confidence 22233355555543 22221 1134688899999999998777764432 2488889 666432
Q ss_pred CCceeeeceee----eccCcceE-----EEEEC--CCEEE--EEeCCC--cEEEEcCCCceeEEEcccCCCCeEEEEEcC
Q 001391 294 DSIEEVGSSVL----YGHNARVW-----DCCLT--DSFII--TAGEDC--TCRVWGSDGKQLKMIKEHIGRGIWRCLYDS 358 (1088)
Q Consensus 294 ~~~~~i~~~~~----~~h~~~I~-----~v~~~--~~~l~--sg~~Dg--~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~ 358 (1088)
.. .. .+|...+. .+.|+ +..++ +...+| .|.+|++.+.....+..+.. .+..+.+.
T Consensus 295 -----~~--~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~-~v~~~~~~- 365 (719)
T 1z68_A 295 -----PK--TQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKW-EAINIFRV- 365 (719)
T ss_dssp -----CG--GGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSS-CEEEEEEE-
T ss_pred -----EE--EEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCce-EEEEEEEE-
Confidence 11 22 46666666 78888 44333 454565 56777775544666666555 48888777
Q ss_pred CCCEEEEEeCC-----CCEEEEEcC
Q 001391 359 LSSLLVTAGFD-----SAIKVHQFQ 378 (1088)
Q Consensus 359 dg~~l~tg~~D-----g~I~iwd~~ 378 (1088)
+++.|+..+.+ +.+++|.+.
T Consensus 366 d~~~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 366 TQDSLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred eCCEEEEEEecCCCCCceEEEEEEe
Confidence 77777666654 889999874
No 153
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.63 E-value=9.1e-14 Score=162.22 Aligned_cols=208 Identities=13% Similarity=0.111 Sum_probs=149.6
Q ss_pred CcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc----------eEEEec----cCCceeEEEEeeecCCCCCcEEE-
Q 001391 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS----------IILEVH----SPERCLLYSMKLWGDNLEALRIA- 197 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~----------~~~~~~----~~~~~~~~s~~~~~~s~~~~~l~- 197 (1088)
..+..+++++ ++.++++++.|+ +++|+..... .+.... .+....+.++++ ++++.+|+
T Consensus 37 ~~~n~lavs~---~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---spdg~~lav 109 (434)
T 2oit_A 37 ERSSLLAVSN---KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLAL---SCDNLTLSA 109 (434)
T ss_dssp SCCBCEEEET---TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEE---CTTSCEEEE
T ss_pred CCccEEEEec---CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEE---cCCCCEEEE
Confidence 4578899999 999999999888 9998864210 111110 111233666766 67889998
Q ss_pred ---EEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCC-CCEEEE
Q 001391 198 ---SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC-GSKLVS 273 (1088)
Q Consensus 198 ---sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~-g~~l~s 273 (1088)
+|+.|+.|++||+.+....... .......+..+.+|...|.+++|+|+ +.+|++
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~----------------------~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las 167 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQ----------------------QKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAV 167 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCS----------------------SCCCSEEEECCCSGGGSEEEEEECSSCTTEEEE
T ss_pred EEeccCCCceEEEEEccccccCCcC----------------------CcceeeeeeccCCCCCceEEEEECCCCCCEEEE
Confidence 7889999999999721000000 00011124456789999999999998 789999
Q ss_pred EECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEcccCC---
Q 001391 274 VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIG--- 348 (1088)
Q Consensus 274 ~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~--- 348 (1088)
++.|++|++||++++. .+ ....+|...|.+++|+ +.+|++|+.||+|++||..++....+..|..
T Consensus 168 ~s~Dg~v~iwD~~~~~--------~~--~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~ 237 (434)
T 2oit_A 168 CLADGSIAVLQVTETV--------KV--CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYES 237 (434)
T ss_dssp EETTSCEEEEEESSSE--------EE--EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCT
T ss_pred EECCCeEEEEEcCCCc--------ce--eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCC
Confidence 9999999999998852 22 2556789999999998 6899999999999999998766666654422
Q ss_pred ---CCeEEEEEcCCCCEEEE-EeCCCC------EEEEEcCC
Q 001391 349 ---RGIWRCLYDSLSSLLVT-AGFDSA------IKVHQFQA 379 (1088)
Q Consensus 349 ---~~V~~l~~~~dg~~l~t-g~~Dg~------I~iwd~~~ 379 (1088)
..|.+++|++++.++++ ...||. +++|++..
T Consensus 238 ~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 238 DHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp TSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred CCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 15899999998877654 334433 89999854
No 154
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.62 E-value=5.1e-14 Score=158.97 Aligned_cols=294 Identities=7% Similarity=-0.007 Sum_probs=172.9
Q ss_pred EEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE-CCCEE
Q 001391 22 ALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRV 99 (1088)
Q Consensus 22 ~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v 99 (1088)
+++++ ++ +++++++. +++|++||..+++.+..+.......+..++|+ |+++ .++++. +++.|
T Consensus 4 g~~~~--~~----~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s-------~dg~---~~~v~~~~~~~i 67 (349)
T 1jmx_B 4 GPALK--AG----HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMA-------PDNR---TAYVLNNHYGDI 67 (349)
T ss_dssp CCCCC--TT----CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEEC-------TTSS---EEEEEETTTTEE
T ss_pred ccccc--CC----CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEEC-------CCCC---EEEEEeCCCCcE
Confidence 44566 65 67777776 69999999999999988886542247899999 7773 444454 47999
Q ss_pred EEEEeccCCCCCCCCCCccccccceeeeccC-C-----CCcEEEEEEecccCCCCEEEEEEcC------------CcEEE
Q 001391 100 KLFELNFELSPNSQYQPETCVNLSLVQSLPR-L-----SHWVFDVCFLKVCNGNRSLAIGCSD------------NSIRV 161 (1088)
Q Consensus 100 ~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~-h-----~~~I~~v~f~p~~~d~~~lasgs~D------------g~V~i 161 (1088)
.+||+... +....+.. + ...+.+++|+| ++++|++++.+ +.|.+
T Consensus 68 ~~~d~~t~---------------~~~~~~~~~~~~~~~~~~~~~~~~sp---dg~~l~~~~~~~~~~~~~~~~~~~~i~~ 129 (349)
T 1jmx_B 68 YGIDLDTC---------------KNTFHANLSSVPGEVGRSMYSFAISP---DGKEVYATVNPTQRLNDHYVVKPPRLEV 129 (349)
T ss_dssp EEEETTTT---------------EEEEEEESCCSTTEEEECSSCEEECT---TSSEEEEEEEEEEECSSCEEECCCEEEE
T ss_pred EEEeCCCC---------------cEEEEEEcccccccccccccceEECC---CCCEEEEEcccccccccccccCCCeEEE
Confidence 99998753 23333322 2 23478999999 99999998865 89999
Q ss_pred EEcCCCce---EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeE
Q 001391 162 WDISNSSI---ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (1088)
Q Consensus 162 Wd~~~~~~---~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 238 (1088)
||+.+++. +.....+.. +.++++ ++++. +++++ +.|.+||..+.+............ ........+.
T Consensus 130 ~d~~~~~~~~~~~~~~~~~~--~~~~~~---s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 199 (349)
T 1jmx_B 130 FSTADGLEAKPVRTFPMPRQ--VYLMRA---ADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNR--KGYSAPDVLY 199 (349)
T ss_dssp EEGGGGGGBCCSEEEECCSS--CCCEEE---CTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCC--TTBCCCBCCC
T ss_pred EECCCccccceeeeccCCCc--ccceeE---CCCCc-EEEcc--CcEEEEeCCCCceeccccccccCC--ccccCcccee
Confidence 99988543 333333322 333444 57887 55543 449999987433221100000000 0000000011
Q ss_pred ecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC
Q 001391 239 LQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT 317 (1088)
Q Consensus 239 ~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s-~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~ 317 (1088)
+|....... . ......+++++++....... ....+..++..+++. ..+ ....+...+..++++
T Consensus 200 ~~~~~~~~~-~------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~------~~~---~~~~~~~~~~~~~~s 263 (349)
T 1jmx_B 200 FWPHQSPRH-E------FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKT------HTQ---EFADLTELYFTGLRS 263 (349)
T ss_dssp CCCCCCTTC-E------EEEEEEEEEC-------CCCEEEEEEEEEETTTCCE------EEE---EEEECSSCEEEEEEC
T ss_pred eecCCCcce-e------EEeeeeeeecCCCcCCccccccceeEEEEeccCCcE------Eec---ccccCCCcceeeEec
Confidence 111100000 0 00244567776553211111 111222355555322 111 233355567788886
Q ss_pred C---CEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 318 D---SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 318 ~---~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+ .+++++ ++.|.+||+ +++.+..+.... .+.+++|+|++++|++++.++.|++||+.+
T Consensus 264 p~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 264 PKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH--TYYCVAFDKKGDKLYLGGTFNDLAVFNPDT 325 (349)
T ss_dssp SSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS--CCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred CCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC--CccceEECCCCCEEEEecCCCeEEEEeccc
Confidence 3 567766 889999999 677767765443 478999999999888888999999999954
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.61 E-value=1.8e-14 Score=180.55 Aligned_cols=301 Identities=11% Similarity=0.055 Sum_probs=191.5
Q ss_pred CCCCceEEecCCCcee-------e---eeEEEEEeccCCCCCCCCEEEEEeC----------CeEEEEECCCCeeEEEEe
Q 001391 2 GKKDLSEWRLDVGQYL-------G---EISALCFVHLPSHLSSLPFLLAGSG----------SQVLLYDLEAGTLIRPFQ 61 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~~~-------~---~V~~v~fs~~pd~~~~~~~laag~d----------~~I~vwd~~tg~~~~~~~ 61 (1088)
.|++|++||+.+++.. . .|.+++|| || +++|+.+++ +.|++||+.+++.+...+
T Consensus 34 ~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~S--pD----g~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~ 107 (719)
T 1z68_A 34 ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLS--PD----RQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE 107 (719)
T ss_dssp TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEEC--TT----SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC
T ss_pred CCCCEEEEEcCCCcEEEEEccccccccceeeEEEC--CC----CCeEEEEecCceeEEeecceEEEEEECCCCcccccee
Confidence 5889999999998721 1 28899999 99 899988763 899999999998732112
Q ss_pred eeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcE------
Q 001391 62 VFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWV------ 135 (1088)
Q Consensus 62 ~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I------ 135 (1088)
. . ..+..++|| ||| ..|+...++.|++|++...... .... .......+.||.++|
T Consensus 108 l-~-~~~~~~~~S-------PDG----~~la~~~~~~i~~~~~~~g~~~--~l~~----~~~~~~v~~g~~~~v~~ee~~ 168 (719)
T 1z68_A 108 L-P-RPIQYLCWS-------PVG----SKLAYVYQNNIYLKQRPGDPPF--QITF----NGRENKIFNGIPDWVYEEEML 168 (719)
T ss_dssp C-C-SSBCCEEEC-------SST----TCEEEEETTEEEEESSTTSCCE--ECCC----CCBTTTEEESSCCHHHHHHTT
T ss_pred c-C-cccccceEC-------CCC----CEEEEEECCeEEEEeCCCCCcE--EEec----CCCcCCeEcccccceeeeecc
Confidence 1 1 258899999 888 5677777899999998754300 0000 000001123454444
Q ss_pred ---EEEEEecccCCCCEEEEEEcCC----------------------------------cEEEEEcCCCceE--EEecc-
Q 001391 136 ---FDVCFLKVCNGNRSLAIGCSDN----------------------------------SIRVWDISNSSII--LEVHS- 175 (1088)
Q Consensus 136 ---~~v~f~p~~~d~~~lasgs~Dg----------------------------------~V~iWd~~~~~~~--~~~~~- 175 (1088)
.+++|+| ||+.||+++.|. .|++||+.+++.. ..+..
T Consensus 169 ~~~~~~~wSP---DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 245 (719)
T 1z68_A 169 ATKYALWWSP---NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVP 245 (719)
T ss_dssp CSSCCEEECT---TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCC
T ss_pred cCcccEEECC---CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCC
Confidence 5899999 999999988653 7889999887642 22221
Q ss_pred ----CCceeEEEEeeecCCCCCcEEEEEecC----CeEEEEE----eccCccccCCCCCCCccCCCCCCCCceeEecccc
Q 001391 176 ----PERCLLYSMKLWGDNLEALRIASGTIY----NEIIVWK----VDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (1088)
Q Consensus 176 ----~~~~~~~s~~~~~~s~~~~~l~sg~~d----g~I~vwd----~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 243 (1088)
.....+.++++ +||+.++++.... ..|.+|| ..
T Consensus 246 ~~~~~~~~~~~~~~~---SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~-------------------------------- 290 (719)
T 1z68_A 246 AMIASSDYYFSWLTW---VTDERVCLQWLKRVQNVSVLSICDFREDWQ-------------------------------- 290 (719)
T ss_dssp HHHHTSCEEEEEEEE---SSSSEEEEEEEESSTTEEEEEEEEECSSSS--------------------------------
T ss_pred ccCCCCcceEEEeEE---eCCCeEEEEEeccccCeEEEEEEcccCCCC--------------------------------
Confidence 22334566665 6787777764433 2478888 55
Q ss_pred cceeeeEEE----eCCCCCEE-----EEEEcCCCCEEEE--EECCC--cEEEEEcCCCcccCCCCceeeeceeeeccCcc
Q 001391 244 HTAVNLFRL----VGHEGSIF-----RIEWSSCGSKLVS--VSDDR--SARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310 (1088)
Q Consensus 244 ~~~~~~~~~----~gh~~~V~-----~v~~sp~g~~l~s--~s~Dg--~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~ 310 (1088)
+++....+ .+|.+.+. .+.|+|||+.++. ...++ .|.+||+.+++. ..+..+...
T Consensus 291 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-----------~~lt~~~~~ 358 (719)
T 1z68_A 291 -TWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-----------IQITSGKWE 358 (719)
T ss_dssp -SEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-----------EECSCSSSC
T ss_pred -CCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-----------EecccCceE
Confidence 22222222 46777776 8899999996544 44555 456666655422 134444555
Q ss_pred eEEEEE-CCCEEEEEeC-----CCcEEEEcCC---Cc-eeEEEcc----cCCCCeEEEEEcCCCCEEEE-EeCC--CCEE
Q 001391 311 VWDCCL-TDSFIITAGE-----DCTCRVWGSD---GK-QLKMIKE----HIGRGIWRCLYDSLSSLLVT-AGFD--SAIK 373 (1088)
Q Consensus 311 I~~v~~-~~~~l~sg~~-----Dg~i~vWd~~---~~-~~~~~~~----h~~~~V~~l~~~~dg~~l~t-g~~D--g~I~ 373 (1088)
+..+.+ .+..|+..+. ++..++|.++ +. ....+.. |.. .+..+.|+|++++++. ++.+ ..+.
T Consensus 359 v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~-~~~~~~~s~dg~~l~~~~s~~~~p~~~ 437 (719)
T 1z68_A 359 AINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERC-QYYTASFSDYAKYYALVCYGPGIPIST 437 (719)
T ss_dssp EEEEEEECSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTB-CBEEEEECGGGSSEEEEECCBSSCEEE
T ss_pred EEEEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCC-ceEEEEECCCCCEEEEEcCCCCCCeEE
Confidence 655444 3555555554 4888999872 32 2344432 444 5889999999886664 4433 4677
Q ss_pred EEEcC
Q 001391 374 VHQFQ 378 (1088)
Q Consensus 374 iwd~~ 378 (1088)
+|++.
T Consensus 438 l~d~~ 442 (719)
T 1z68_A 438 LHDGR 442 (719)
T ss_dssp EECSS
T ss_pred EEECC
Confidence 88774
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.60 E-value=3.7e-14 Score=172.90 Aligned_cols=231 Identities=11% Similarity=-0.021 Sum_probs=161.0
Q ss_pred CCcceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCC-CcEEEEEEe
Q 001391 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS-HWVFDVCFL 141 (1088)
Q Consensus 64 ~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~I~~v~f~ 141 (1088)
....|++++|+ |||+ .++.++. |++++||+++.. ....+..|. ..|.+++|+
T Consensus 20 ~~~~~~~~~~~-------~DG~---~la~~s~~~g~~~lw~~~~g----------------~~~~lt~~~~~~~~~~~~s 73 (582)
T 3o4h_A 20 IAVEKYSLQGV-------VDGD---KLLVVGFSEGSVNAYLYDGG----------------ETVKLNREPINSVLDPHYG 73 (582)
T ss_dssp HHSCEEEEEEE-------ETTT---EEEEEEEETTEEEEEEEETT----------------EEEECCSSCCSEECEECTT
T ss_pred hccchheeecC-------CCCC---eEEEEEccCCceeEEEEcCC----------------CcEeeecccccccccccCC
Confidence 34579999999 8883 3433444 899999998532 223444555 689999999
Q ss_pred cccCCCCEEEEEEc---CCcEEEEEcCC--CceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccc
Q 001391 142 KVCNGNRSLAIGCS---DNSIRVWDISN--SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVA 216 (1088)
Q Consensus 142 p~~~d~~~lasgs~---Dg~V~iWd~~~--~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~ 216 (1088)
| | +++++++. +...++|.+.. ......+.........++. .+.++..++++..++ +.+||+.
T Consensus 74 p---d-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~s---~dg~~~~~~s~~~~~-~~l~d~~----- 140 (582)
T 3o4h_A 74 V---G-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGV---DTGEAVVFTGATEDR-VALYALD----- 140 (582)
T ss_dssp C---S-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSCSBEEEEEE---ECSSCEEEEEECSSC-EEEEEEE-----
T ss_pred C---C-eEEEEeccCCCCcceEEEEEeccCCCccccccCCCCceeeeeC---CCCCeEEEEecCCCC-ceEEEcc-----
Confidence 9 8 78887765 55567766543 2222244333222222222 233344555555554 4599998
Q ss_pred cCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC----CcEEEEEcCCCcccC
Q 001391 217 PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD----RSARIWEVRAEYWKD 292 (1088)
Q Consensus 217 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D----g~v~iWd~~~~~~~~ 292 (1088)
+++...... +.. .+++|+|||+++++++.| +.|++||+.+++.
T Consensus 141 ----------------------------~g~~~~l~~-~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~-- 187 (582)
T 3o4h_A 141 ----------------------------GGGLRELAR-LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL-- 187 (582)
T ss_dssp ----------------------------TTEEEEEEE-ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC--
T ss_pred ----------------------------CCcEEEeec-CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc--
Confidence 343333333 333 789999999999988877 7899999988643
Q ss_pred CCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCC--cEEEEcC-CCceeEEEcccCCCCeEEEE--------EcCC
Q 001391 293 SDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC--TCRVWGS-DGKQLKMIKEHIGRGIWRCL--------YDSL 359 (1088)
Q Consensus 293 ~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg--~i~vWd~-~~~~~~~~~~h~~~~V~~l~--------~~~d 359 (1088)
..+.+|...+..++|+ +..|+++..++ .|++||+ +++.. .+..|.. .+..++ |+||
T Consensus 188 ---------~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~spd 256 (582)
T 3o4h_A 188 ---------RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSK-DFSSYRPTAITWLGYLPD 256 (582)
T ss_dssp ---------EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCS-HHHHHCCSEEEEEEECTT
T ss_pred ---------eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCc-ChhhhhhccccceeEcCC
Confidence 2567788889999999 67888888888 8999999 45554 6666665 466667 9999
Q ss_pred CCEEEEEeCCCCEEEEEc
Q 001391 360 SSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 360 g~~l~tg~~Dg~I~iwd~ 377 (1088)
|.++++++.|+++++|++
T Consensus 257 g~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 257 GRLAVVARREGRSAVFID 274 (582)
T ss_dssp SCEEEEEEETTEEEEEET
T ss_pred CcEEEEEEcCCcEEEEEE
Confidence 999999999999999998
No 157
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.60 E-value=1.6e-13 Score=154.82 Aligned_cols=262 Identities=10% Similarity=0.057 Sum_probs=166.9
Q ss_pred CCCCceEEecCCCcee------e--eeEEEEEeccCCCCCCCCEEEEE-e-CCeEEEEECCCCeeEEEEeeeC-----Cc
Q 001391 2 GKKDLSEWRLDVGQYL------G--EISALCFVHLPSHLSSLPFLLAG-S-GSQVLLYDLEAGTLIRPFQVFH-----GI 66 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~~~------~--~V~~v~fs~~pd~~~~~~~laag-~-d~~I~vwd~~tg~~~~~~~~~~-----~~ 66 (1088)
.|+.|++||+.+++.. . .+..++|+ |+ +++++++ . ++.|.+||+.+++.+..+...+ +.
T Consensus 19 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s--~d----g~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~ 92 (349)
T 1jmx_B 19 YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMA--PD----NRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGR 92 (349)
T ss_dssp TTTEEEEEETTTTEEEEEEECSSCCSSCEEEEC--TT----SSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEE
T ss_pred CCCeEEEEECCCCcEEEEEecCCCCCCceeEEC--CC----CCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccc
Confidence 5789999999998722 2 46789999 99 7766544 3 5899999999999988877533 23
Q ss_pred ceEEEEecccccccCCCccceeeEEEEEC------------CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCc
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFG------------EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW 134 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~g------------d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 134 (1088)
.+.+++|+ |||+ .++++.. ++.|.+||+.... ..+.+..+. +...
T Consensus 93 ~~~~~~~s-------pdg~---~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~------------~~~~~~~~~-~~~~ 149 (349)
T 1jmx_B 93 SMYSFAIS-------PDGK---EVYATVNPTQRLNDHYVVKPPRLEVFSTADGL------------EAKPVRTFP-MPRQ 149 (349)
T ss_dssp CSSCEEEC-------TTSS---EEEEEEEEEEECSSCEEECCCEEEEEEGGGGG------------GBCCSEEEE-CCSS
T ss_pred cccceEEC-------CCCC---EEEEEcccccccccccccCCCeEEEEECCCcc------------ccceeeecc-CCCc
Confidence 47889999 8873 3444443 4899999998532 112222332 3346
Q ss_pred EEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCce-----------------------eEEEEeeecCCC
Q 001391 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERC-----------------------LLYSMKLWGDNL 191 (1088)
Q Consensus 135 I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~-----------------------~~~s~~~~~~s~ 191 (1088)
+.+++|+| +++ +++++ +.|.+||+.+++.+..+..+... ..+.+.+. +
T Consensus 150 ~~~~~~s~---dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 220 (349)
T 1jmx_B 150 VYLMRAAD---DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF---K 220 (349)
T ss_dssp CCCEEECT---TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC----
T ss_pred ccceeECC---CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeec---C
Confidence 89999999 998 55554 44999999999887776533200 11112221 1
Q ss_pred CCcEEE-EEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcC-CCC
Q 001391 192 EALRIA-SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGS 269 (1088)
Q Consensus 192 ~~~~l~-sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp-~g~ 269 (1088)
++.... .......+..++..+ .......+..+...+.+++|+| +++
T Consensus 221 d~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~sp~dg~ 268 (349)
T 1jmx_B 221 DDKQDPATADLLYGYLSVDLKT--------------------------------GKTHTQEFADLTELYFTGLRSPKDPN 268 (349)
T ss_dssp ------CCCEEEEEEEEEETTT--------------------------------CCEEEEEEEECSSCEEEEEECSSCTT
T ss_pred CCcCCccccccceeEEEEeccC--------------------------------CcEEecccccCCCcceeeEecCCCCC
Confidence 110000 000001111233320 0111122233567789999999 999
Q ss_pred EEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEccc
Q 001391 270 KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEH 346 (1088)
Q Consensus 270 ~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h 346 (1088)
+++++ ++.|.+||+.+++ .+. .+. ....+.+++|+ +.+|++++.++.|++||. +++.+..+...
T Consensus 269 ~l~~~--~~~v~~~d~~~~~--------~~~--~~~-~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 269 QIYGV--LNRLAKYDLKQRK--------LIK--AAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEEE--ESEEEEEETTTTE--------EEE--EEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EEEEE--cCeEEEEECccCe--------EEE--EEc-CCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 99888 8899999998853 222 222 23456789998 567778888999999999 67777776554
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.60 E-value=1.5e-12 Score=148.13 Aligned_cols=285 Identities=12% Similarity=0.093 Sum_probs=176.4
Q ss_pred CCEEEEEe-----CCeEEEEEC--CCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECC----CEEEEEE
Q 001391 35 LPFLLAGS-----GSQVLLYDL--EAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE----KRVKLFE 103 (1088)
Q Consensus 35 ~~~laag~-----d~~I~vwd~--~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd----~~v~iw~ 103 (1088)
..+++.|+ ++.|.+|++ .+|+....... +...+..++|+ |||+ .++++..+ +.|.+|+
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~s-------pdg~---~l~~~~~~~~~~~~v~~~~ 81 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPS-------ADGK---FVYSVNEFSKDQAAVSAFA 81 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEEC-------TTSS---EEEEEECCSSTTCEEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEEC-------CCCC---EEEEEEccCCCCCcEEEEE
Confidence 34566664 367888866 56655433333 44468889999 8873 44455443 7999999
Q ss_pred eccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE-cCCcEEEEEcCCCceEEEe------ccC
Q 001391 104 LNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISNSSIILEV------HSP 176 (1088)
Q Consensus 104 l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs-~Dg~V~iWd~~~~~~~~~~------~~~ 176 (1088)
+.... + ..+.+.....+......+++ ++++|++++ .++.|.+|++.....+..+ ...
T Consensus 82 ~~~~~--g---------~~~~~~~~~~~~~~p~~~~~-----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~ 145 (361)
T 3scy_A 82 FDKEK--G---------TLHLLNTQKTMGADPCYLTT-----NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGS 145 (361)
T ss_dssp EETTT--T---------EEEEEEEEECSSSCEEEEEE-----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCC
T ss_pred EeCCC--C---------cEEEeeEeccCCCCcEEEEE-----CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCC
Confidence 98531 0 13455555555566777776 556666655 6889999999754332111 110
Q ss_pred -------CceeEEEEeeecCCCCCcEEEEE-ecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCce-eEeccccccee
Q 001391 177 -------ERCLLYSMKLWGDNLEALRIASG-TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKC-FKLQDQQHTAV 247 (1088)
Q Consensus 177 -------~~~~~~s~~~~~~s~~~~~l~sg-~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~~~~~~~~~ 247 (1088)
......++++ +|++..++++ ..++.|.+|++........ .. +.. .+.
T Consensus 146 ~~~~~~~~~~~~~~~~~---spdg~~l~~~~~~~~~v~v~~~~~~~~~~~----------------~~~l~~-----~~~ 201 (361)
T 3scy_A 146 GPDKERQTMPHLHCVRI---TPDGKYLLADDLGTDQIHKFNINPNANADN----------------KEKFLT-----KGT 201 (361)
T ss_dssp CSCTTTCSSCCEEEEEE---CTTSSEEEEEETTTTEEEEEEECTTCCTTT----------------CCCCEE-----EEE
T ss_pred CCCccccCCCcceEEEE---CCCCCEEEEEeCCCCEEEEEEEcCCCCccc----------------ccceee-----ccc
Confidence 0112344555 6889866554 4589999999872110000 00 000 000
Q ss_pred eeEEEeCCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCcccCCCCceeeec-eeeeccCcceEEEEEC--CCEEEE
Q 001391 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIEEVGS-SVLYGHNARVWDCCLT--DSFIIT 323 (1088)
Q Consensus 248 ~~~~~~gh~~~V~~v~~sp~g~~l~s~s-~Dg~v~iWd~~~~~~~~~~~~~~i~~-~~~~~h~~~I~~v~~~--~~~l~s 323 (1088)
.......+...+..++|+|+|+++++++ .++.|.+|++.++.. ..+.. .....+......++|+ +.+|++
T Consensus 202 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~------~~~~~~~~~~~~~~~~~~i~~spdg~~l~v 275 (361)
T 3scy_A 202 PEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML------DEIQTVAADTVNAQGSGDIHLSPDGKYLYA 275 (361)
T ss_dssp EEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE------EEEEEEESCSSCCCCEEEEEECTTSSEEEE
T ss_pred ccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce------EEeEEEecCCCCCCCcccEEECCCCCEEEE
Confidence 0112234456688999999999887777 689999999986532 22221 0223344557899998 567766
Q ss_pred EeC--CCcEEEEcCC---Cc--eeEEEcccCCCCeEEEEEcCCCCEEEEEe-CCCCEEEEEcC
Q 001391 324 AGE--DCTCRVWGSD---GK--QLKMIKEHIGRGIWRCLYDSLSSLLVTAG-FDSAIKVHQFQ 378 (1088)
Q Consensus 324 g~~--Dg~i~vWd~~---~~--~~~~~~~h~~~~V~~l~~~~dg~~l~tg~-~Dg~I~iwd~~ 378 (1088)
+.. ++.|.+|+++ ++ .+..+.. +..+..++|+|+|++|++++ .++.|.+|+++
T Consensus 276 ~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 276 SNRLKADGVAIFKVDETNGTLTKVGYQLT--GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EECSSSCEEEEEEECTTTCCEEEEEEEEC--SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred ECCCCCCEEEEEEEcCCCCcEEEeeEecC--CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 655 4899999983 44 3334443 33578999999999888887 67899998774
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.59 E-value=1.7e-12 Score=147.65 Aligned_cols=289 Identities=11% Similarity=0.081 Sum_probs=174.1
Q ss_pred CCCCceEEec--CCCc-------eeeeeEEEEEeccCCCCCCCCEEEEEeC-----CeEEEEECCC--Cee--EEEEeee
Q 001391 2 GKKDLSEWRL--DVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGSG-----SQVLLYDLEA--GTL--IRPFQVF 63 (1088)
Q Consensus 2 ~d~~i~iWdl--~~g~-------~~~~V~~v~fs~~pd~~~~~~~laag~d-----~~I~vwd~~t--g~~--~~~~~~~ 63 (1088)
+++.|.+|++ .+++ +...+..++|+ || +++|+++.. +.|.+|++.. |+. +.....
T Consensus 25 ~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~s--pd----g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~- 97 (361)
T 3scy_A 25 NSKGIYTFRFNEETGESLPLSDAEVANPSYLIPS--AD----GKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKT- 97 (361)
T ss_dssp SCCEEEEEEEETTTCCEEEEEEEECSCCCSEEEC--TT----SSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEEC-
T ss_pred CCCCEEEEEEeCCCCCEEEeecccCCCCceEEEC--CC----CCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEecc-
Confidence 4667889876 4454 23446678999 99 888888764 7999998865 543 223322
Q ss_pred CCcceEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEec
Q 001391 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLK 142 (1088)
Q Consensus 64 ~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p 142 (1088)
.+.....+++ +++ .++++. ++++|.+|++.......... ........-......+...+.+++|+|
T Consensus 98 ~~~~p~~~~~---------dg~---~l~~~~~~~~~v~~~~~~~~g~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~sp 164 (361)
T 3scy_A 98 MGADPCYLTT---------NGK---NIVTANYSGGSITVFPIGQDGALLPAS-DVIEFKGSGPDKERQTMPHLHCVRITP 164 (361)
T ss_dssp SSSCEEEEEE---------CSS---EEEEEETTTTEEEEEEBCTTSCBCSCS-EEEECCCCCSCTTTCSSCCEEEEEECT
T ss_pred CCCCcEEEEE---------CCC---EEEEEECCCCEEEEEEeCCCCcCcccc-eeEEccCCCCCccccCCCcceEEEECC
Confidence 2334555555 231 444444 48999999997532100000 000000000000122344578999999
Q ss_pred ccCCCCEEEEEE-cCCcEEEEEcCCCce------E------EEeccCCceeEEEEeeecCCCCCcEEEEEe-cCCeEEEE
Q 001391 143 VCNGNRSLAIGC-SDNSIRVWDISNSSI------I------LEVHSPERCLLYSMKLWGDNLEALRIASGT-IYNEIIVW 208 (1088)
Q Consensus 143 ~~~d~~~lasgs-~Dg~V~iWd~~~~~~------~------~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~-~dg~I~vw 208 (1088)
++++|++++ .++.|++|++..... + .....+.......+++ +|++.++++++ .++.|.+|
T Consensus 165 ---dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---spdg~~l~v~~~~~~~v~v~ 238 (361)
T 3scy_A 165 ---DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIF---NSDGKFAYLINEIGGTVIAF 238 (361)
T ss_dssp ---TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEE---CTTSSEEEEEETTTCEEEEE
T ss_pred ---CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEE---cCCCCEEEEEcCCCCeEEEE
Confidence 999666554 588999999875431 1 1222222333445555 68898777766 68999999
Q ss_pred EeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE---eCCCCCEEEEEEcCCCCEEEEEEC--CCcEEEE
Q 001391 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL---VGHEGSIFRIEWSSCGSKLVSVSD--DRSARIW 283 (1088)
Q Consensus 209 d~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~gh~~~V~~v~~sp~g~~l~s~s~--Dg~v~iW 283 (1088)
++.++ ....+..+ ..+...+..++|+|||++|+++.. ++.|.+|
T Consensus 239 ~~~~g-------------------------------~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~ 287 (361)
T 3scy_A 239 RYADG-------------------------------MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIF 287 (361)
T ss_dssp EEETT-------------------------------EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEE
T ss_pred EecCC-------------------------------ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEE
Confidence 99721 11122222 234456789999999999876665 4899999
Q ss_pred EcCC--CcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEe-CCCcEEEEcC---CCceeEEEcc-cCCCCeEEE
Q 001391 284 EVRA--EYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG-EDCTCRVWGS---DGKQLKMIKE-HIGRGIWRC 354 (1088)
Q Consensus 284 d~~~--~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~-~Dg~i~vWd~---~~~~~~~~~~-h~~~~V~~l 354 (1088)
++.. ++ .+.+. .... ...+.+++|+ +.+|++++ .++.+.+|++ +++....... +.. .+.++
T Consensus 288 ~~~~~~g~------~~~~~--~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~-~p~~v 357 (361)
T 3scy_A 288 KVDETNGT------LTKVG--YQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVD-KPVCL 357 (361)
T ss_dssp EECTTTCC------EEEEE--EEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECS-SEEEE
T ss_pred EEcCCCCc------EEEee--EecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCC-CCeEE
Confidence 9963 22 12332 2222 4567889998 56777777 6789999655 4444333222 333 57788
Q ss_pred EEc
Q 001391 355 LYD 357 (1088)
Q Consensus 355 ~~~ 357 (1088)
.|.
T Consensus 358 ~~~ 360 (361)
T 3scy_A 358 KFV 360 (361)
T ss_dssp EEE
T ss_pred EEc
Confidence 875
No 160
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.59 E-value=4.3e-14 Score=164.96 Aligned_cols=223 Identities=11% Similarity=0.100 Sum_probs=152.6
Q ss_pred CCceEEecCCCceeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCC----------eeEEE----EeeeCCcceE
Q 001391 4 KDLSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG----------TLIRP----FQVFHGIRLH 69 (1088)
Q Consensus 4 ~~i~iWdl~~g~~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg----------~~~~~----~~~~~~~~V~ 69 (1088)
+.+++|+.........+..++++ ++ +.+|++|....++||+..+. ..+.. ........|.
T Consensus 23 ~~vri~~~~~~~~~~~~n~lavs--~~----~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (434)
T 2oit_A 23 KKVRIFDSPEELPKERSSLLAVS--NK----YGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIH 96 (434)
T ss_dssp CEEECSCCCSSCCCSCCBCEEEE--TT----TTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEE
T ss_pred eeEEecCCccccCCCCccEEEEe--cC----CCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCccc
Confidence 35777765433233458899999 88 78899888544999885321 01111 1112234699
Q ss_pred EEEecccccccCCCccceeeEEE----EEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEeccc
Q 001391 70 GISCNFINCTEGSVSTRVTFEVA----LFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (1088)
Q Consensus 70 ~i~~s~~~~~~~~d~~~~~~~la----~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~ 144 (1088)
+++|+ |++ .+|+ +++ |++|+|||+......... .......+..+.+|.+.|.+++|+|
T Consensus 97 ~l~~s-------pdg----~~lav~~~sgs~d~~v~iwd~~~~~~~~~~----~~~~~~~~~~~~~h~~~V~~v~~~p-- 159 (434)
T 2oit_A 97 HLALS-------CDN----LTLSACMMSSEYGSIIAFFDVRTFSNEAKQ----QKRPFAYHKLLKDAGGMVIDMKWNP-- 159 (434)
T ss_dssp EEEEC-------TTS----CEEEEEEEETTTEEEEEEEEHHHHHCTTCS----SCCCSEEEECCCSGGGSEEEEEECS--
T ss_pred EEEEc-------CCC----CEEEEEEeccCCCceEEEEEccccccCCcC----CcceeeeeeccCCCCCceEEEEECC--
Confidence 99999 777 4555 333 899999999753100000 0001234567788999999999999
Q ss_pred CC-CCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCC
Q 001391 145 NG-NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPE 223 (1088)
Q Consensus 145 ~d-~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~ 223 (1088)
+ +.+|++++.||+|++||+.++..+.....+ ...+.++++ ++++.+|++|+.||.|++||.+
T Consensus 160 -~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~-~~~v~~v~w---spdg~~lasgs~dg~v~iwd~~------------ 222 (434)
T 2oit_A 160 -TVPSMVAVCLADGSIAVLQVTETVKVCATLPS-TVAVTSVCW---SPKGKQLAVGKQNGTVVQYLPT------------ 222 (434)
T ss_dssp -SCTTEEEEEETTSCEEEEEESSSEEEEEEECG-GGCEEEEEE---CTTSSCEEEEETTSCEEEECTT------------
T ss_pred -CCCCEEEEEECCCeEEEEEcCCCcceeeccCC-CCceeEEEE---cCCCCEEEEEcCCCcEEEEccC------------
Confidence 7 789999999999999999988665544433 334667776 6789999999999999999986
Q ss_pred CccCCCCCCCCceeEecccccceeeeEEEe-------CCCCCEEEEEEcCCCCEEEE-EECCC------cEEEEEcCCC
Q 001391 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-------GHEGSIFRIEWSSCGSKLVS-VSDDR------SARIWEVRAE 288 (1088)
Q Consensus 224 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-------gh~~~V~~v~~sp~g~~l~s-~s~Dg------~v~iWd~~~~ 288 (1088)
+.....+. .|...|.+++|++++.++++ ++.|| .+++|++...
T Consensus 223 ----------------------~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 223 ----------------------LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp ----------------------CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ----------------------CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 11122222 23458999999999888755 34443 3899999864
No 161
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.56 E-value=2.4e-13 Score=170.49 Aligned_cols=325 Identities=10% Similarity=0.043 Sum_probs=202.5
Q ss_pred CceEEecCCCceeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCc--c--eEEEEeccccccc
Q 001391 5 DLSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGI--R--LHGISCNFINCTE 80 (1088)
Q Consensus 5 ~i~iWdl~~g~~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~--~--V~~i~~s~~~~~~ 80 (1088)
.+.+.|+..|.+......++|+ || +.+|+++ +++|++||+.++++...+..+... . ...++||
T Consensus 4 ~~tl~~~~~~~~~~~~~~~~w~--~d----g~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S------ 70 (740)
T 4a5s_A 4 TYTLTDYLKNTYRLKLYSLRWI--SD----HEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSIS------ 70 (740)
T ss_dssp ECCHHHHHHTCSCCCCCCEEEC--SS----SEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEEC------
T ss_pred ceeHHHHhcCcccccccccEEC--CC----CcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEEC------
Confidence 3556677777777778899999 99 8899887 999999999999987777765432 1 2336778
Q ss_pred CCCccceeeEEEEECC---------CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEE
Q 001391 81 GSVSTRVTFEVALFGE---------KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1088)
Q Consensus 81 ~~d~~~~~~~la~~gd---------~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la 151 (1088)
|||+ .++..+.+ +.+.+||+.... ...+..|...+...+|+| ||+.||
T Consensus 71 -pdg~---~l~~~~~~~~~~r~~~~~~~~~~d~~~~~----------------~~~l~~~~~~~~~~~~SP---dG~~la 127 (740)
T 4a5s_A 71 -PDGQ---FILLEYNYVKQWRHSYTASYDIYDLNKRQ----------------LITEERIPNNTQWVTWSP---VGHKLA 127 (740)
T ss_dssp -TTSS---EEEEEEEEEECSSSCEEEEEEEEETTTTE----------------ECCSSCCCTTEEEEEECS---STTCEE
T ss_pred -CCCC---EEEEEECCeeeEEEccceEEEEEECCCCc----------------EEEcccCCCcceeeEECC---CCCEEE
Confidence 8883 34444443 567799988532 234567788999999999 999998
Q ss_pred EEEcCCcEEEEEcCCCceEEEeccCCceeEE-----------------EEeeecCCCCCcEEEEEecCC-eEEEEEeccC
Q 001391 152 IGCSDNSIRVWDISNSSIILEVHSPERCLLY-----------------SMKLWGDNLEALRIASGTIYN-EIIVWKVDWE 213 (1088)
Q Consensus 152 sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~-----------------s~~~~~~s~~~~~l~sg~~dg-~I~vwd~~~~ 213 (1088)
.+. |+.|.+|++.+++............++ ++.+ +|||..||.+..|. .+.+|++...
T Consensus 128 ~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w---SpDg~~la~~~~d~~~v~~~~~~~~ 203 (740)
T 4a5s_A 128 YVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWW---SPNGTFLAYAQFNDTEVPLIEYSFY 203 (740)
T ss_dssp EEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEE---CTTSSEEEEEEEECTTCCEEEEEEC
T ss_pred EEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEE---CCCCCEEEEEEEcccCCceEEEEee
Confidence 884 789999999887754322211111111 1222 79999999877654 4888887522
Q ss_pred cccc-CCC--CCCCccCCCCCCCCceeEeccccc---cee-eeEEEe------CCCCCEEEEEEcCCCCEEEEEEC----
Q 001391 214 HVAP-LLN--SPEGNHAHGSSSDFKCFKLQDQQH---TAV-NLFRLV------GHEGSIFRIEWSSCGSKLVSVSD---- 276 (1088)
Q Consensus 214 ~~~~-~~~--~~~~~s~~~~~~~~~~~~~~~~~~---~~~-~~~~~~------gh~~~V~~v~~sp~g~~l~s~s~---- 276 (1088)
.... ... ........|.......+.+|+... ... ....+. +|...+..++|+|||+.++....
T Consensus 204 ~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~ 283 (740)
T 4a5s_A 204 SDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQN 283 (740)
T ss_dssp CSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTT
T ss_pred cCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCC
Confidence 1110 000 111222333333445677777653 210 233443 38888999999999997665432
Q ss_pred CCcEEEEEcCCCc----ccCCCCceeeeceeeeccCcceE-----EEEEC--CCEEE-EEeC-CC--cEEEEcCCCceeE
Q 001391 277 DRSARIWEVRAEY----WKDSDSIEEVGSSVLYGHNARVW-----DCCLT--DSFII-TAGE-DC--TCRVWGSDGKQLK 341 (1088)
Q Consensus 277 Dg~v~iWd~~~~~----~~~~~~~~~i~~~~~~~h~~~I~-----~v~~~--~~~l~-sg~~-Dg--~i~vWd~~~~~~~ 341 (1088)
+..|++||+.+++ + . .+......+|...|. ...|+ +..|+ ..++ +| .|.+|+.++....
T Consensus 284 ~~~i~~~d~~tg~~~~~~-----~-~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~ 357 (740)
T 4a5s_A 284 YSVMDICDYDESSGRWNC-----L-VARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT 357 (740)
T ss_dssp EEEEEEEEEETTTTEEEE-----C-GGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE
T ss_pred EEEEEEEECCCCccccce-----e-EEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE
Confidence 3479999998865 1 0 111012245555544 67788 45555 5553 44 5788888666666
Q ss_pred EEcccCCCCeEEEEEcCCCCEEE-EEeC----CCCEEEEEc
Q 001391 342 MIKEHIGRGIWRCLYDSLSSLLV-TAGF----DSAIKVHQF 377 (1088)
Q Consensus 342 ~~~~h~~~~V~~l~~~~dg~~l~-tg~~----Dg~I~iwd~ 377 (1088)
.+..... .|..+.. +|++.|+ ++.. .+...||.+
T Consensus 358 ~lT~g~~-~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v 396 (740)
T 4a5s_A 358 FITKGTW-EVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKI 396 (740)
T ss_dssp ESCCSSS-CEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEE
T ss_pred ecccCCE-EEEEEEE-EeCCEEEEEEecCCCCCceeEEEEE
Confidence 6654443 4666542 3455444 4443 244555554
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.49 E-value=7.2e-12 Score=142.85 Aligned_cols=276 Identities=9% Similarity=0.015 Sum_probs=170.3
Q ss_pred EEEEEe-C--CeEEEEEC--CCCeeEE--EEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEec-cCC
Q 001391 37 FLLAGS-G--SQVLLYDL--EAGTLIR--PFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELN-FEL 108 (1088)
Q Consensus 37 ~laag~-d--~~I~vwd~--~tg~~~~--~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~-~~~ 108 (1088)
+|++|+ . +.|.+|++ .+|++.. .........+..++|+ |||+ .++++..+ .|.+|++. ...
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~s-------pdg~---~l~~~~~~-~v~~~~~~~~g~ 72 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFD-------HERK---NIYGAAMK-KWSSFAVKSPTE 72 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEEC-------TTSS---EEEEEEBT-EEEEEEEEETTE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEEC-------CCCC---EEEEEccc-eEEEEEECCCCC
Confidence 355554 2 56887764 5676432 2221122358899999 8873 34444445 99999997 321
Q ss_pred CCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCE--EEEEE-------------cCCcEEEEEcC-CCceEEE
Q 001391 109 SPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRS--LAIGC-------------SDNSIRVWDIS-NSSIILE 172 (1088)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~--lasgs-------------~Dg~V~iWd~~-~~~~~~~ 172 (1088)
...+.....+ +.+.+++|+| ++++ ++++. .++++.+|++. .++....
T Consensus 73 -------------~~~~~~~~~~-g~~~~~~~sp---dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~ 135 (365)
T 1jof_A 73 -------------IVHEASHPIG-GHPRANDADT---NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKN 135 (365)
T ss_dssp -------------EEEEEEEECC-SSGGGGCTTS---CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEE
T ss_pred -------------EEEeeEeecC-CCCccEEECC---CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcce
Confidence 1111111111 2255688999 9984 55553 68999999997 4655433
Q ss_pred ecc---CCceeEEEEeeecCCCCCcEEEEEec-CCeEEEEEec-cCccccCCCCCCCccCCCCCCCCceeEeccccccee
Q 001391 173 VHS---PERCLLYSMKLWGDNLEALRIASGTI-YNEIIVWKVD-WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1088)
Q Consensus 173 ~~~---~~~~~~~s~~~~~~s~~~~~l~sg~~-dg~I~vwd~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 247 (1088)
+.. ........+++ +|++.++++++. ++.|.+|++. ++ ...
T Consensus 136 ~~~~~~~~~~~~~~~~~---spdG~~l~~~~~~~~~v~~~~~~~~g-------------------------------~~~ 181 (365)
T 1jof_A 136 VQNYEYQENTGIHGMVF---DPTETYLYSADLTANKLWTHRKLASG-------------------------------EVE 181 (365)
T ss_dssp EEEEECCTTCCEEEEEE---CTTSSEEEEEETTTTEEEEEEECTTS-------------------------------CEE
T ss_pred EeeEEeCCCCcceEEEE---CCCCCEEEEEcCCCCEEEEEEECCCC-------------------------------CEE
Confidence 321 12233555655 788988877654 6899999986 11 112
Q ss_pred eeEEEe--CCCCCEEEEEEcCCCCEEEEEEC-CCcEEEEEcCC--CcccCCCCceeeeceee----eccCc------ceE
Q 001391 248 NLFRLV--GHEGSIFRIEWSSCGSKLVSVSD-DRSARIWEVRA--EYWKDSDSIEEVGSSVL----YGHNA------RVW 312 (1088)
Q Consensus 248 ~~~~~~--gh~~~V~~v~~sp~g~~l~s~s~-Dg~v~iWd~~~--~~~~~~~~~~~i~~~~~----~~h~~------~I~ 312 (1088)
.+..+. .|...+..++|+|+|+++++++. ++.|.+|++.. ++... ..+.+. .+ .+|.. .+.
T Consensus 182 ~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~--~~~~~~--~~~~~~~g~~~~~~~~~~~~ 257 (365)
T 1jof_A 182 LVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVY--THHSFP--LIPPGIPDRDPETGKGLYRA 257 (365)
T ss_dssp EEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE--EEEEEE--SSCTTCCCBCTTTSSBSEEE
T ss_pred EeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEE--ccceEE--cCCCCcCCcccccccccccc
Confidence 223333 34667999999999999888775 78999998763 22100 000111 11 12332 588
Q ss_pred EEE-EC--CCEEEEEeCCC------cEEEEcC--CCceeE---EEcccCCCCeEEEEEcC---CCCEEEEEeCC-CCEEE
Q 001391 313 DCC-LT--DSFIITAGEDC------TCRVWGS--DGKQLK---MIKEHIGRGIWRCLYDS---LSSLLVTAGFD-SAIKV 374 (1088)
Q Consensus 313 ~v~-~~--~~~l~sg~~Dg------~i~vWd~--~~~~~~---~~~~h~~~~V~~l~~~~---dg~~l~tg~~D-g~I~i 374 (1088)
.++ |+ +++|+++..+. +|++|++ +++... ....+.. .+..++|+| ||++|++++.+ +.|++
T Consensus 258 ~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~-~~~~~a~sp~~~dg~~l~v~~~~~~~v~v 336 (365)
T 1jof_A 258 DVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS-GGHSNAVSPCPWSDEWMAITDDQEGWLEI 336 (365)
T ss_dssp EEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC-CTTCCCEEECTTCTTEEEEECSSSCEEEE
T ss_pred cEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCC-CcccceecCCCcCCCEEEEEEcCCCeEEE
Confidence 999 98 56776665432 8999998 355433 1333333 467889999 89999998875 89999
Q ss_pred EEcCC
Q 001391 375 HQFQA 379 (1088)
Q Consensus 375 wd~~~ 379 (1088)
|+++.
T Consensus 337 ~~~~~ 341 (365)
T 1jof_A 337 YRWKD 341 (365)
T ss_dssp EEEET
T ss_pred EEEch
Confidence 99854
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.48 E-value=6.7e-12 Score=143.10 Aligned_cols=251 Identities=9% Similarity=-0.018 Sum_probs=158.8
Q ss_pred eeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECC-CCeeEEEEeeeCCcceEEEEecccccccCCCccceee-EEEEE--
Q 001391 19 EISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLE-AGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF-EVALF-- 94 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~-tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~-~la~~-- 94 (1088)
.+..++|+ |+ +++|+++..+.|.+||+. +|++...........+.+++|+ |||+ . ++++.
T Consensus 41 ~~~~~a~s--pd----g~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~s-------pdg~---~l~~~~~~~ 104 (365)
T 1jof_A 41 PISWMTFD--HE----RKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDAD-------TNTR---AIFLLAAKQ 104 (365)
T ss_dssp CCSEEEEC--TT----SSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTT-------SCCE---EEEEEECSS
T ss_pred CCcEEEEC--CC----CCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEEC-------CCCC---EEEEEEecC
Confidence 47789999 99 888888774499999997 8877654432211135567787 8872 3 33332
Q ss_pred ------------CCCEEEEEEeccCCCCCCCCCCccccccceeeecc-CCCCcEEEEEEecccCCCCEEEEEEc-CCcEE
Q 001391 95 ------------GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP-RLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIR 160 (1088)
Q Consensus 95 ------------gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~I~~v~f~p~~~d~~~lasgs~-Dg~V~ 160 (1088)
.++++.+|++.... . ....+..+. .+...+.+++|+| ||++|+++.. ++.|+
T Consensus 105 ~~~~~~~~~~~~~~g~v~v~~~~~~g---~--------~~~~~~~~~~~~~~~~~~~~~sp---dG~~l~~~~~~~~~v~ 170 (365)
T 1jof_A 105 PPYAVYANPFYKFAGYGNVFSVSETG---K--------LEKNVQNYEYQENTGIHGMVFDP---TETYLYSADLTANKLW 170 (365)
T ss_dssp TTCCEEEEEESSSCCEEEEEEECTTC---C--------EEEEEEEEECCTTCCEEEEEECT---TSSEEEEEETTTTEEE
T ss_pred CcceeccceeecCCceEEEEccCCCC---c--------CcceEeeEEeCCCCcceEEEECC---CCCEEEEEcCCCCEEE
Confidence 57899999997422 0 011122111 3557899999999 9998887754 68999
Q ss_pred EEEcC-CCceE--EEeccCC-ceeEEEEeeecCCCCCcEEEEEec-CCeEEEEEeccCccccCCCCCCCccCCCCCCCCc
Q 001391 161 VWDIS-NSSII--LEVHSPE-RCLLYSMKLWGDNLEALRIASGTI-YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (1088)
Q Consensus 161 iWd~~-~~~~~--~~~~~~~-~~~~~s~~~~~~s~~~~~l~sg~~-dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~ 235 (1088)
+|++. +++.. ..+..+. ......+++ +|++.++++++. ++.|.+|++...
T Consensus 171 ~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~---spdg~~l~v~~~~~~~v~v~~~~~~---------------------- 225 (365)
T 1jof_A 171 THRKLASGEVELVGSVDAPDPGDHPRWVAM---HPTGNYLYALMEAGNRICEYVIDPA---------------------- 225 (365)
T ss_dssp EEEECTTSCEEEEEEEECSSTTCCEEEEEE---CTTSSEEEEEETTTTEEEEEEECTT----------------------
T ss_pred EEEECCCCCEEEeeeEecCCCCCCCCEeEE---CCCCCEEEEEECCCCeEEEEEEeCC----------------------
Confidence 99998 67653 2333221 233455655 688988877664 789999988610
Q ss_pred eeEecccccceee------eEEE----eCCCC------CEEEEE-EcCCCCEEEEEECC-C-----cEEEEEcC-CCccc
Q 001391 236 CFKLQDQQHTAVN------LFRL----VGHEG------SIFRIE-WSSCGSKLVSVSDD-R-----SARIWEVR-AEYWK 291 (1088)
Q Consensus 236 ~~~~~~~~~~~~~------~~~~----~gh~~------~V~~v~-~sp~g~~l~s~s~D-g-----~v~iWd~~-~~~~~ 291 (1088)
+++. +..+ .+|.. .+..++ |+|||++|+++..+ . .|.+|++. +++.
T Consensus 226 ---------~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~- 295 (365)
T 1jof_A 226 ---------THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI- 295 (365)
T ss_dssp ---------TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE-
T ss_pred ---------CCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCE-
Confidence 1111 1111 12333 588999 99999998776543 2 89999996 3322
Q ss_pred CCCCceeeeceeeeccCcceEEEEEC-----CCEEEEEeCC-CcEEEEcCCCcee
Q 001391 292 DSDSIEEVGSSVLYGHNARVWDCCLT-----DSFIITAGED-CTCRVWGSDGKQL 340 (1088)
Q Consensus 292 ~~~~~~~i~~~~~~~h~~~I~~v~~~-----~~~l~sg~~D-g~i~vWd~~~~~~ 340 (1088)
..+. .....+...+..++|+ +.+|++++.+ ++|++|+++.+.+
T Consensus 296 -----~~~~-~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~l 344 (365)
T 1jof_A 296 -----EKQL-FLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL 344 (365)
T ss_dssp -----EEEE-EEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred -----EEee-eeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhhC
Confidence 1111 0122233334445554 5788888865 8999999854444
No 164
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.48 E-value=2.1e-11 Score=138.51 Aligned_cols=273 Identities=9% Similarity=0.097 Sum_probs=181.9
Q ss_pred CCCceEEecCCCceeee-----eEEEEEeccCCCCCCCCEEEEEe-----------CCeEEEEECCCCeeEEEEeeeC--
Q 001391 3 KKDLSEWRLDVGQYLGE-----ISALCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDLEAGTLIRPFQVFH-- 64 (1088)
Q Consensus 3 d~~i~iWdl~~g~~~~~-----V~~v~fs~~pd~~~~~~~laag~-----------d~~I~vwd~~tg~~~~~~~~~~-- 64 (1088)
|++|.+||..+++.... --.++|+ || +++|+++. ++.|.+||..+++.+.++....
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g~~p~i~~s--pd----g~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~ 103 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTAFNGHVQVS--ND----GKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR 103 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECCEEEEEEEC--TT----SSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB
T ss_pred cCeEEEEECCCCeEEEEecCCCCCceEEC--CC----CCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc
Confidence 67899999999873211 1189999 99 88888864 3679999999999999887642
Q ss_pred ---CcceEEEEecccccccCCCccceeeEEEEE-C-CCEEEEEEeccCCCCCCCCCCccccccceeee-ccCCCCcEEEE
Q 001391 65 ---GIRLHGISCNFINCTEGSVSTRVTFEVALF-G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQS-LPRLSHWVFDV 138 (1088)
Q Consensus 65 ---~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~-l~~h~~~I~~v 138 (1088)
+....+++++ |||+ .++++. + +++|.+||+... +.+.. +... ....+
T Consensus 104 ~~~g~~p~~i~~s-------pdg~---~l~v~n~~~~~~v~v~d~~~~---------------~~~~~~i~~~--~~~~v 156 (361)
T 2oiz_A 104 VQGLNYDGLFRQT-------TDGK---FIVLQNASPATSIGIVDVAKG---------------DYVEDVTAAA--GCWSV 156 (361)
T ss_dssp CCBCCCGGGEEEC-------TTSS---EEEEEEESSSEEEEEEETTTT---------------EEEEEEGGGT--TEEEE
T ss_pred cccCCCcceEEEC-------CCCC---EEEEECCCCCCeEEEEECCCC---------------cEEEEEecCC--Cccee
Confidence 2346789999 8884 444443 4 689999999853 34444 3321 12336
Q ss_pred EEecccCCC-CEEEEEEcCCcEEEEEcCC-CceEEEec------cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEe
Q 001391 139 CFLKVCNGN-RSLAIGCSDNSIRVWDISN-SSIILEVH------SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV 210 (1088)
Q Consensus 139 ~f~p~~~d~-~~lasgs~Dg~V~iWd~~~-~~~~~~~~------~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~ 210 (1088)
.+.| ++ ..+++.+.||.+.+|++.. ++...... .... .+ +....+++..++..+.++.|.++|+
T Consensus 157 ~~~p---~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~-~~----~~~~~~~g~~~~~~~~~~~v~v~d~ 228 (361)
T 2oiz_A 157 IPQP---NRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDD-PI----FIAPALDKDKAHFVSYYGNVYSADF 228 (361)
T ss_dssp EECT---TSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTS-CB----CSCCEECSSEEEEEBTTSEEEEEEC
T ss_pred EEcC---CCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCC-ce----EEEecccCCEEEEEeCCCeEEEEEe
Confidence 6777 54 6778888999999999865 55442221 1111 00 1111345556666678899999998
Q ss_pred ccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC------CC----CCEEEEEEcCCCCEEEEEEC----
Q 001391 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG------HE----GSIFRIEWSSCGSKLVSVSD---- 276 (1088)
Q Consensus 211 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g------h~----~~V~~v~~sp~g~~l~s~s~---- 276 (1088)
.... ...+..+.- +. .....++|+|+++++..+..
T Consensus 229 ~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~ 277 (361)
T 2oiz_A 229 SGDE-------------------------------VKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGK 277 (361)
T ss_dssp SSSS-------------------------------CEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCC
T ss_pred cCCC-------------------------------ceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCC
Confidence 6111 011111110 00 11113689999888776543
Q ss_pred -------CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CC--ceeEEEc
Q 001391 277 -------DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DG--KQLKMIK 344 (1088)
Q Consensus 277 -------Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~--~~~~~~~ 344 (1088)
...|.+||+.+. +.+. .+..+. +++++|+ +.+|++++. ++|.+||. ++ +.+..+.
T Consensus 278 ~~~~~~~~~~v~viD~~t~--------~~v~--~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~ 344 (361)
T 2oiz_A 278 EGTHKFPAAEIWVMDTKTK--------QRVA--RIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIE 344 (361)
T ss_dssp TTCTTCCCSEEEEEETTTT--------EEEE--EEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEET
T ss_pred cccccCCCceEEEEECCCC--------cEEE--EEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEec
Confidence 348999999885 4444 455555 8999998 678888887 99999999 77 8888876
Q ss_pred ccCCCCeEEEEEcCCCC
Q 001391 345 EHIGRGIWRCLYDSLSS 361 (1088)
Q Consensus 345 ~h~~~~V~~l~~~~dg~ 361 (1088)
.+.. ..+.++++|+|.
T Consensus 345 ~~G~-~P~~~~~~p~G~ 360 (361)
T 2oiz_A 345 GAAE-ASLQVQFHPVGG 360 (361)
T ss_dssp TSCS-SEEEEEECCCSC
T ss_pred cCCC-CcEEEEecCCCC
Confidence 5554 588999999985
No 165
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.47 E-value=9.6e-12 Score=141.37 Aligned_cols=257 Identities=10% Similarity=0.012 Sum_probs=169.6
Q ss_pred CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE----------CCCEEEEEEeccCCCCCC
Q 001391 43 GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF----------GEKRVKLFELNFELSPNS 112 (1088)
Q Consensus 43 d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~----------gd~~v~iw~l~~~~~~~~ 112 (1088)
++.|.+||..+++.+.++..... - .++|+ ||++ .+.++. .+++|.+||+.+
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g~~--p-~i~~s-------pdg~---~lyv~~~~~~~~~~g~~~~~v~v~d~~t------ 90 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTAFN--G-HVQVS-------NDGK---KIYTMTTYHERITRGKRSDVVEVWDADK------ 90 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECCEE--E-EEEEC-------TTSS---EEEEEEEEETTSSSSCEEEEEEEEETTT------
T ss_pred cCeEEEEECCCCeEEEEecCCCC--C-ceEEC-------CCCC---EEEEEEecccccccCCCCCEEEEEECcC------
Confidence 46999999999999988876432 3 89999 8883 444443 256899999874
Q ss_pred CCCCccccccceeeeccC------CCCcEEEEEEecccCCCCEEEEEEc--CCcEEEEEcCCCceEEE-eccCCceeEEE
Q 001391 113 QYQPETCVNLSLVQSLPR------LSHWVFDVCFLKVCNGNRSLAIGCS--DNSIRVWDISNSSIILE-VHSPERCLLYS 183 (1088)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~------h~~~I~~v~f~p~~~d~~~lasgs~--Dg~V~iWd~~~~~~~~~-~~~~~~~~~~s 183 (1088)
++.+..+.. +......++|+| ||++|+++.. +++|.+||+.+++.+.. +..+.. +.
T Consensus 91 ---------~~~~~~i~~~~~~~~~g~~p~~i~~sp---dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~---~~ 155 (361)
T 2oiz_A 91 ---------LTFEKEISLPPKRVQGLNYDGLFRQTT---DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC---WS 155 (361)
T ss_dssp ---------CCEEEEEEECTTBCCBCCCGGGEEECT---TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE---EE
T ss_pred ---------CcEEEEEEcCccccccCCCcceEEECC---CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc---ce
Confidence 233333322 234567899999 9999988864 68999999999988887 654332 12
Q ss_pred EeeecCCCC-CcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeE------EEeCCC
Q 001391 184 MKLWGDNLE-ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF------RLVGHE 256 (1088)
Q Consensus 184 ~~~~~~s~~-~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~------~~~gh~ 256 (1088)
+.+ .|+ ...+++.+.||.+.+|+... .++... .+..+.
T Consensus 156 v~~---~p~~~~~~~~~~~dg~~~~v~~~~--------------------------------~g~~~~~~~~~~~~~~~~ 200 (361)
T 2oiz_A 156 VIP---QPNRPRSFMTICGDGGLLTINLGE--------------------------------DGKVASQSRSKQMFSVKD 200 (361)
T ss_dssp EEE---CTTSSSEEEEEETTSSEEEEEECT--------------------------------TSSEEEEEECCCCSCTTT
T ss_pred eEE---cCCCCeeEEEECCCCcEEEEEECC--------------------------------CCcEeeeccccceEcCCC
Confidence 222 233 36778888999999999861 011110 111112
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeec----cC----cceEEEEEC--CCEEEEEeC
Q 001391 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG----HN----ARVWDCCLT--DSFIITAGE 326 (1088)
Q Consensus 257 ~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~----h~----~~I~~v~~~--~~~l~sg~~ 326 (1088)
..+ .+.++|++..++..+.++.|.++|+..... ..+....... +. .....++|+ +..++.+..
T Consensus 201 ~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~ 273 (361)
T 2oiz_A 201 DPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEV------KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMH 273 (361)
T ss_dssp SCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSC------EEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEE
T ss_pred Cce-EEEecccCCEEEEEeCCCeEEEEEecCCCc------eecccccccCccccccccccCCeeEEEEecCCCeEEEEEc
Confidence 221 233456777787788899999999876432 1111001100 00 111124566 455555443
Q ss_pred -----------CCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 327 -----------DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 327 -----------Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
.++|.+||+ +++.+..+..+. +++++|+|||++|++++. ++|.+||..+
T Consensus 274 ~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~---p~~ia~spdg~~l~v~n~-~~v~v~D~~t 334 (361)
T 2oiz_A 274 PDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD---ALSMTIDQQRNLMLTLDG-GNVNVYDISQ 334 (361)
T ss_dssp SSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT---CCEEEEETTTTEEEEECS-SCEEEEECSS
T ss_pred cCCCcccccCCCceEEEEECCCCcEEEEEecCC---eeEEEECCCCCEEEEeCC-CeEEEEECCC
Confidence 348999999 788888887765 789999999999999887 9999999854
No 166
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.47 E-value=3.3e-12 Score=146.64 Aligned_cols=260 Identities=8% Similarity=-0.067 Sum_probs=162.1
Q ss_pred eEEEEECCCCeeEEEEeeeCCcceEE-----EEecccccccCCCccceeeEEEEEC-CCE--EEEEEeccCCCCCCCCCC
Q 001391 45 QVLLYDLEAGTLIRPFQVFHGIRLHG-----ISCNFINCTEGSVSTRVTFEVALFG-EKR--VKLFELNFELSPNSQYQP 116 (1088)
Q Consensus 45 ~I~vwd~~tg~~~~~~~~~~~~~V~~-----i~~s~~~~~~~~d~~~~~~~la~~g-d~~--v~iw~l~~~~~~~~~~~~ 116 (1088)
....+|..+|..+..+..+.. ..+. .+|| |||+ .++.++. ++. |.+||+..
T Consensus 11 ~~~~~~~~~g~~~~~lt~~~~-~~~~~~~~~~~~S-------pDg~---~l~~~~~~~g~~~l~~~d~~~---------- 69 (388)
T 3pe7_A 11 FDTYQDASTGAQVTRLTPPDV-TCHRNYFYQKCFT-------RDGS---KLLFGGAFDGPWNYYLLDLNT---------- 69 (388)
T ss_dssp CEEEECTTTCCEEEECSCTTS-CEECCCTTSCCBC-------TTSC---EEEEEECTTSSCEEEEEETTT----------
T ss_pred ceEEecCCCCcceEEecCCcc-cccchhhcCccCC-------CCCC---EEEEEEcCCCCceEEEEeCCC----------
Confidence 344567888888888776554 3555 7788 8883 4444454 554 66666653
Q ss_pred ccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEE
Q 001391 117 ETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRI 196 (1088)
Q Consensus 117 ~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l 196 (1088)
.+......++...+..++|+| |++.|+.++.++.|++||+.+++.......+...... ..+ ..++++..+
T Consensus 70 -----g~~~~lt~~~~~~~~~~~~sp---dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~-~~~-~~~~dg~~l 139 (388)
T 3pe7_A 70 -----QVATQLTEGRGDNTFGGFLSP---DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGY-GTW-VANSDCTKL 139 (388)
T ss_dssp -----CEEEECCCSSCBCSSSCEECT---TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEE-EEE-EECTTSSEE
T ss_pred -----CceEEeeeCCCCCccceEEcC---CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccc-cce-eECCCCCee
Confidence 233444456666666788999 9999999999999999999998876655544432211 111 115777777
Q ss_pred EEE----------------------ecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 197 ASG----------------------TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 197 ~sg----------------------~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
+.. ..++.|.+||+. +++ ...+..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~---------------------------------~g~-~~~l~~ 185 (388)
T 3pe7_A 140 VGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK---------------------------------TGE-STVILQ 185 (388)
T ss_dssp EEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT---------------------------------TCC-EEEEEE
T ss_pred ccccccCcccccccccchhhhhhccCCcceEEEEECC---------------------------------CCc-eEEeec
Confidence 642 233567777776 332 334455
Q ss_pred CCCCEEEEEEcC-CCCEEEEEECC------CcEEEEEcCCCcccCCCCceeeeceeeeccC--cceEEEEEC--CCEEEE
Q 001391 255 HEGSIFRIEWSS-CGSKLVSVSDD------RSARIWEVRAEYWKDSDSIEEVGSSVLYGHN--ARVWDCCLT--DSFIIT 323 (1088)
Q Consensus 255 h~~~V~~v~~sp-~g~~l~s~s~D------g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~--~~I~~v~~~--~~~l~s 323 (1088)
+...+..++|+| +|+.|+.++.+ ..|.++|...... + .+..+. ..+...+|+ +..|+.
T Consensus 186 ~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~------~-----~l~~~~~~~~~~~~~~spdg~~l~~ 254 (388)
T 3pe7_A 186 ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM------R-----KVKTHAEGESCTHEFWVPDGSALVY 254 (388)
T ss_dssp ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC------E-----ESCCCCTTEEEEEEEECTTSSCEEE
T ss_pred CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce------E-----EeeeCCCCcccccceECCCCCEEEE
Confidence 677899999999 99999887764 3677778765432 1 233333 357788898 455544
Q ss_pred -EeCCC----cEEEEcC-CCce--eEEEcccCC--CCeEEEEEcCCCCEEEEE---------eCCCCEEEEEcCCC
Q 001391 324 -AGEDC----TCRVWGS-DGKQ--LKMIKEHIG--RGIWRCLYDSLSSLLVTA---------GFDSAIKVHQFQAF 380 (1088)
Q Consensus 324 -g~~Dg----~i~vWd~-~~~~--~~~~~~h~~--~~V~~l~~~~dg~~l~tg---------~~Dg~I~iwd~~~~ 380 (1088)
...++ .|++||+ +++. +..+.++.. .....++|+|||+.|+.. ..+..|.+||+.+.
T Consensus 255 ~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 255 VSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp EEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred EecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 33322 3999999 4442 223332110 001123689999877753 45678999998653
No 167
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.46 E-value=2.6e-11 Score=132.82 Aligned_cols=234 Identities=8% Similarity=0.106 Sum_probs=166.1
Q ss_pred ceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeec------cCCCCcEEEEE
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL------PRLSHWVFDVC 139 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l------~~h~~~I~~v~ 139 (1088)
.+.+++++ +++ .++++ ..++.|.+|+.+. +.+..+ .+|...+.+++
T Consensus 31 ~p~~v~~~-------~~g----~l~v~~~~~~~i~~~d~~g----------------~~~~~~~~~~~~~~~~~~p~~i~ 83 (286)
T 1q7f_A 31 EPSGVAVN-------AQN----DIIVADTNNHRIQIFDKEG----------------RFKFQFGECGKRDSQLLYPNRVA 83 (286)
T ss_dssp CEEEEEEC-------TTC----CEEEEEGGGTEEEEECTTS----------------CEEEEECCBSSSTTCBSSEEEEE
T ss_pred CCceEEEC-------CCC----CEEEEECCCCEEEEECCCC----------------cEEEEecccCCCcccccCceEEE
Confidence 57889998 776 45555 4589999999762 122222 24556789999
Q ss_pred Ee-cccCCCCEEEEEEc-CCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCcccc
Q 001391 140 FL-KVCNGNRSLAIGCS-DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217 (1088)
Q Consensus 140 f~-p~~~d~~~lasgs~-Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~ 217 (1088)
+. + ++.++++... ++.|++|| .+++.+..+..........+++ ++++.++++...++.|.+||..
T Consensus 84 ~~~~---~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~---~~~g~l~v~~~~~~~i~~~~~~------ 150 (286)
T 1q7f_A 84 VVRN---SGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTV---DNKGRIIVVECKVMRVIIFDQN------ 150 (286)
T ss_dssp EETT---TTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEE---CTTSCEEEEETTTTEEEEECTT------
T ss_pred EEcC---CCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEE---eCCCCEEEEECCCCEEEEEcCC------
Confidence 95 5 6666665543 88999999 5677776665433334455655 5678888887788999999965
Q ss_pred CCCCCCCccCCCCCCCCceeEecccccceeeeEEEe--CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCC
Q 001391 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV--GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDS 295 (1088)
Q Consensus 218 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~ 295 (1088)
+..+..+. ++...+.+++++|+|+.+++.+.++.|++||....
T Consensus 151 ----------------------------g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~------- 195 (286)
T 1q7f_A 151 ----------------------------GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ------- 195 (286)
T ss_dssp ----------------------------SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC-------
T ss_pred ----------------------------CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC-------
Confidence 22333332 45567999999999998888888999999997542
Q ss_pred ceeeeceeeeccCcceEEEEEC--CCEEEEEeCCC-cEEEEcCCCceeEEEcccCC-CCeEEEEEcCCCCEEEEEeCCCC
Q 001391 296 IEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC-TCRVWGSDGKQLKMIKEHIG-RGIWRCLYDSLSSLLVTAGFDSA 371 (1088)
Q Consensus 296 ~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg-~i~vWd~~~~~~~~~~~h~~-~~V~~l~~~~dg~~l~tg~~Dg~ 371 (1088)
.+..+...++...+..++++ +.++++...++ .|++|+.+++.+..+..+.. ..+.+++++|+|+++++ +.|+.
T Consensus 196 --~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~ 272 (286)
T 1q7f_A 196 --YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYR 272 (286)
T ss_dssp --EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTE
T ss_pred --EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCe
Confidence 22201112334578899997 56777777775 99999998888888766543 13789999999987777 67999
Q ss_pred EEEEEcC
Q 001391 372 IKVHQFQ 378 (1088)
Q Consensus 372 I~iwd~~ 378 (1088)
|++|++.
T Consensus 273 v~v~~~~ 279 (286)
T 1q7f_A 273 LYIYRYV 279 (286)
T ss_dssp EEEEECS
T ss_pred EEEEEcc
Confidence 9999984
No 168
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.45 E-value=2.8e-11 Score=151.79 Aligned_cols=307 Identities=10% Similarity=0.079 Sum_probs=184.6
Q ss_pred CCCceEEecCCCcee------------eeeEEEEEeccCCCCCCCCEEEEEeC----------CeEEEEECCCCeeEEEE
Q 001391 3 KKDLSEWRLDVGQYL------------GEISALCFVHLPSHLSSLPFLLAGSG----------SQVLLYDLEAGTLIRPF 60 (1088)
Q Consensus 3 d~~i~iWdl~~g~~~------------~~V~~v~fs~~pd~~~~~~~laag~d----------~~I~vwd~~tg~~~~~~ 60 (1088)
|++|++||+.+++.. .....++|| || +++|+.+++ +.+.+||+.++++.. +
T Consensus 35 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S--pd----g~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l 107 (740)
T 4a5s_A 35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSIS--PD----GQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-E 107 (740)
T ss_dssp TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEEC--TT----SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-S
T ss_pred CCcEEEEECCCCceEEEEechhhhhhcccccceEEC--CC----CCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-c
Confidence 788999999998721 112347889 99 899998875 677899999998653 4
Q ss_pred eeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEE----
Q 001391 61 QVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVF---- 136 (1088)
Q Consensus 61 ~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~---- 136 (1088)
..+.+ .+...+|| ||| ..||...++.|.+|++.......-.+ .......+.++.++|+
T Consensus 108 ~~~~~-~~~~~~~S-------PdG----~~la~~~~~~i~~~~~~~~~~~~lt~------~g~~~~~~~g~~~~v~~ee~ 169 (740)
T 4a5s_A 108 ERIPN-NTQWVTWS-------PVG----HKLAYVWNNDIYVKIEPNLPSYRITW------TGKEDIIYNGITDWVYEEEV 169 (740)
T ss_dssp SCCCT-TEEEEEEC-------SST----TCEEEEETTEEEEESSTTSCCEECCS------CCBTTTEEESBCCHHHHHHT
T ss_pred ccCCC-cceeeEEC-------CCC----CEEEEEECCeEEEEECCCCceEEEcC------CCCccceecCcccccccchh
Confidence 44444 69999999 898 56777788999999987543000000 0011112334444443
Q ss_pred -----EEEEecccCCCCEEEEEEcCC------------------------------------cEEEEEcCC---Cc--eE
Q 001391 137 -----DVCFLKVCNGNRSLAIGCSDN------------------------------------SIRVWDISN---SS--II 170 (1088)
Q Consensus 137 -----~v~f~p~~~d~~~lasgs~Dg------------------------------------~V~iWd~~~---~~--~~ 170 (1088)
.+.|+| ||+.||.++.|. +|++||+.+ ++ ..
T Consensus 170 ~~~~~~~~wSp---Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~ 246 (740)
T 4a5s_A 170 FSAYSALWWSP---NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATS 246 (740)
T ss_dssp SSSSBCEEECT---TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCE
T ss_pred cCCCcceEECC---CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceE
Confidence 489999 999999876432 478889888 63 23
Q ss_pred EEeccC-----CceeEEEEeeecCCCCCcEEEEEec----CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecc
Q 001391 171 LEVHSP-----ERCLLYSMKLWGDNLEALRIASGTI----YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1088)
Q Consensus 171 ~~~~~~-----~~~~~~s~~~~~~s~~~~~l~sg~~----dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 241 (1088)
..+..+ ....+..+.+ +||+..++.... +..|.+||+.+++...
T Consensus 247 ~~l~~~~~~~~~~~~~~~~~w---spdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~------------------------ 299 (740)
T 4a5s_A 247 IQITAPASMLIGDHYLCDVTW---ATQERISLQWLRRIQNYSVMDICDYDESSGRW------------------------ 299 (740)
T ss_dssp EEECCCHHHHTSCEEEEEEEE---EETTEEEEEEEESSTTEEEEEEEEEETTTTEE------------------------
T ss_pred EEecCCccCCCCCeEEEEEEE---eCCCeEEEEEeCCCCCEEEEEEEECCCCcccc------------------------
Confidence 334331 3344556665 578876665433 3479999988322000
Q ss_pred cccceeeeEE--EeCCCCCEE-----EEEEcCCCCEEE-EEECC---CcEEEEEcCCCcccCCCCceeeeceeeeccCcc
Q 001391 242 QQHTAVNLFR--LVGHEGSIF-----RIEWSSCGSKLV-SVSDD---RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310 (1088)
Q Consensus 242 ~~~~~~~~~~--~~gh~~~V~-----~v~~sp~g~~l~-s~s~D---g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~ 310 (1088)
....+.. -.+|.+.|. ...|+|||+.++ ..+.+ ..|.+||..++.. + .+......
T Consensus 300 ---~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~------~-----~lT~g~~~ 365 (740)
T 4a5s_A 300 ---NCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC------T-----FITKGTWE 365 (740)
T ss_dssp ---EECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC------E-----ESCCSSSC
T ss_pred ---ceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce------E-----ecccCCEE
Confidence 0001111 145666655 788999999877 66643 4688888876533 1 22222334
Q ss_pred eEEEE-ECCCEE-EEEeC----CCcEEEE--cCCCceeE-EEccc---CCCCeEEEEEcCCCCEEEEEeCC---CCEEEE
Q 001391 311 VWDCC-LTDSFI-ITAGE----DCTCRVW--GSDGKQLK-MIKEH---IGRGIWRCLYDSLSSLLVTAGFD---SAIKVH 375 (1088)
Q Consensus 311 I~~v~-~~~~~l-~sg~~----Dg~i~vW--d~~~~~~~-~~~~h---~~~~V~~l~~~~dg~~l~tg~~D---g~I~iw 375 (1088)
+..+. ++++.| +++.. .+...+| ++.+.... .+... ....+....|+|++++++..... ..+.++
T Consensus 366 v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~ 445 (740)
T 4a5s_A 366 VIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLH 445 (740)
T ss_dssp EEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEE
T ss_pred EEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEE
Confidence 44433 555544 44444 2334444 44544333 34321 11258899999999976655433 345566
Q ss_pred EcC
Q 001391 376 QFQ 378 (1088)
Q Consensus 376 d~~ 378 (1088)
+..
T Consensus 446 ~~~ 448 (740)
T 4a5s_A 446 SSV 448 (740)
T ss_dssp ETT
T ss_pred ECC
Confidence 653
No 169
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.45 E-value=9.7e-12 Score=142.74 Aligned_cols=273 Identities=12% Similarity=-0.025 Sum_probs=170.0
Q ss_pred EEEeccCCCCCCCCEEEEEeC--C--eEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCE
Q 001391 23 LCFVHLPSHLSSLPFLLAGSG--S--QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKR 98 (1088)
Q Consensus 23 v~fs~~pd~~~~~~~laag~d--~--~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~ 98 (1088)
.+|| || +++|+.+.+ + .|.+||+.+++.......+ ...+.++.|+ |||+ .++.+..++.
T Consensus 41 ~~~S--pD----g~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~-~~~~~~~~~s-------pdg~---~l~~~~~~~~ 103 (388)
T 3pe7_A 41 KCFT--RD----GSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGR-GDNTFGGFLS-------PDDD---ALFYVKDGRN 103 (388)
T ss_dssp CCBC--TT----SCEEEEEECTTSSCEEEEEETTTCEEEECCCSS-CBCSSSCEEC-------TTSS---EEEEEETTTE
T ss_pred ccCC--CC----CCEEEEEEcCCCCceEEEEeCCCCceEEeeeCC-CCCccceEEc-------CCCC---EEEEEeCCCe
Confidence 7899 99 888888763 4 5999999998876655543 3345577899 8883 4445555789
Q ss_pred EEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEE--ecccCCCCEEEEE----------------------E
Q 001391 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCF--LKVCNGNRSLAIG----------------------C 154 (1088)
Q Consensus 99 v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f--~p~~~d~~~lasg----------------------s 154 (1088)
|.+||+.... ....+..+...+....+ +| ++.+++.. .
T Consensus 104 l~~~d~~~g~---------------~~~~~~~~~~~~~~~~~~~~~---dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T 3pe7_A 104 LMRVDLATLE---------------ENVVYQVPAEWVGYGTWVANS---DCTKLVGIEIRREDWVPLTDWKKFHEFYFTK 165 (388)
T ss_dssp EEEEETTTCC---------------EEEEEECCTTEEEEEEEEECT---TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred EEEEECCCCc---------------ceeeeechhhcccccceeECC---CCCeeccccccCcccccccccchhhhhhccC
Confidence 9999998643 22223344555544444 67 88887743 2
Q ss_pred cCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCC-CCcEEEEEecC------CeEEEEEeccCccccCCCCCCCccC
Q 001391 155 SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL-EALRIASGTIY------NEIIVWKVDWEHVAPLLNSPEGNHA 227 (1088)
Q Consensus 155 ~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~-~~~~l~sg~~d------g~I~vwd~~~~~~~~~~~~~~~~s~ 227 (1088)
.+..|.+||+.+++......... .+..+.+ +| ++..|+..... ..|.++|..
T Consensus 166 ~~~~l~~~d~~~g~~~~l~~~~~--~~~~~~~---sp~dg~~l~~~~~~~~~~~~~~l~~~d~~---------------- 224 (388)
T 3pe7_A 166 PCCRLMRVDLKTGESTVILQENQ--WLGHPIY---RPYDDSTVAFCHEGPHDLVDARMWLINED---------------- 224 (388)
T ss_dssp CCEEEEEEETTTCCEEEEEEESS--CEEEEEE---ETTEEEEEEEEECSCTTTSSCSEEEEETT----------------
T ss_pred CcceEEEEECCCCceEEeecCCc--cccccEE---CCCCCCEEEEEEecCCCCCcceEEEEeCC----------------
Confidence 34679999999887554433222 2334444 57 88888776653 356666665
Q ss_pred CCCCCCCceeEecccccceeeeEEEeCCC--CCEEEEEEcCCCCEEEEEECC-C----cEEEEEcCCCcccCCCCceeee
Q 001391 228 HGSSSDFKCFKLQDQQHTAVNLFRLVGHE--GSIFRIEWSSCGSKLVSVSDD-R----SARIWEVRAEYWKDSDSIEEVG 300 (1088)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~gh~--~~V~~v~~sp~g~~l~s~s~D-g----~v~iWd~~~~~~~~~~~~~~i~ 300 (1088)
.. ....+..+. ..+...+|+|||+.|+..+.+ + .|++||+.+++. +.+.
T Consensus 225 -----------------~~-~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~------~~l~ 280 (388)
T 3pe7_A 225 -----------------GT-NMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN------RQLT 280 (388)
T ss_dssp -----------------SC-CCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE------EEEE
T ss_pred -----------------CC-ceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce------EEEE
Confidence 11 222333333 357889999999977654432 2 399999988643 2221
Q ss_pred ceeeeccCcce---EEEEEC--CCEEEEE---------eCCCcEEEEcCCCceeEEEcccCCC----------CeEEEEE
Q 001391 301 SSVLYGHNARV---WDCCLT--DSFIITA---------GEDCTCRVWGSDGKQLKMIKEHIGR----------GIWRCLY 356 (1088)
Q Consensus 301 ~~~~~~h~~~I---~~v~~~--~~~l~sg---------~~Dg~i~vWd~~~~~~~~~~~h~~~----------~V~~l~~ 356 (1088)
...++.... ....|+ +..|+.. ..+..|++||+.+..+..+..+... .+.+++|
T Consensus 281 --~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 358 (388)
T 3pe7_A 281 --SMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSF 358 (388)
T ss_dssp --EECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEE
T ss_pred --cCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccC
Confidence 222211000 011344 4444432 5567899999966666666655430 2678899
Q ss_pred cCCCCEEEEEe-CCCCEEEEEc
Q 001391 357 DSLSSLLVTAG-FDSAIKVHQF 377 (1088)
Q Consensus 357 ~~dg~~l~tg~-~Dg~I~iwd~ 377 (1088)
+|||+.|+..+ .+|...+|.+
T Consensus 359 spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 359 TPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp CTTSSEEEEEECTTSSCEEEEE
T ss_pred CCCCCEEEEEecCCCceeEEEE
Confidence 99999777655 5788888866
No 170
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.41 E-value=1.3e-10 Score=127.23 Aligned_cols=241 Identities=10% Similarity=0.049 Sum_probs=167.6
Q ss_pred CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccC-----CceeEEEEeeecCCCCCcEEEEEec-CC
Q 001391 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP-----ERCLLYSMKLWGDNLEALRIASGTI-YN 203 (1088)
Q Consensus 130 ~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~-----~~~~~~s~~~~~~s~~~~~l~sg~~-dg 203 (1088)
++-..+.+++++| ++.++++...++.|.+||.. ++.+..+... .......+++. .+++.++++... ++
T Consensus 27 g~~~~p~~v~~~~---~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~--~~~g~l~v~~~~~~~ 100 (286)
T 1q7f_A 27 GQFTEPSGVAVNA---QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVV--RNSGDIIVTERSPTH 100 (286)
T ss_dssp TCBSCEEEEEECT---TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEE--TTTTEEEEEECGGGC
T ss_pred CccCCCceEEECC---CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEE--cCCCeEEEEcCCCCC
Confidence 5567799999999 99988888889999999987 5555555321 11223444441 345666666543 88
Q ss_pred eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe-CCCCCEEEEEEcCCCCEEEEEECCCcEEE
Q 001391 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-GHEGSIFRIEWSSCGSKLVSVSDDRSARI 282 (1088)
Q Consensus 204 ~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~v~~sp~g~~l~s~s~Dg~v~i 282 (1088)
.|.+||.. +..+..+. .+...+.+++++|+|+.+++...++.|.+
T Consensus 101 ~i~~~d~~----------------------------------g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 146 (286)
T 1q7f_A 101 QIQIYNQY----------------------------------GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVII 146 (286)
T ss_dssp EEEEECTT----------------------------------SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred EEEEECCC----------------------------------CcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 99999943 33344443 34567899999999998888888899999
Q ss_pred EEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEcccC-CCCeEEEEEcCC
Q 001391 283 WEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHI-GRGIWRCLYDSL 359 (1088)
Q Consensus 283 Wd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~-~~~V~~l~~~~d 359 (1088)
||.... .+..+...++...+..++++ +.++++...++.|++|+.+++.+..+..+. ...+..++++++
T Consensus 147 ~~~~g~---------~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~ 217 (286)
T 1q7f_A 147 FDQNGN---------VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSN 217 (286)
T ss_dssp ECTTSC---------EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTT
T ss_pred EcCCCC---------EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCC
Confidence 996542 22111112445568899998 456666677899999999888887775442 125889999999
Q ss_pred CCEEEEEeCCC-CEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEec
Q 001391 360 SSLLVTAGFDS-AIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN 438 (1088)
Q Consensus 360 g~~l~tg~~Dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~ 438 (1088)
|+++++...++ .|.+|+.+++.+..+. .. .....+..+++.|++.++++..
T Consensus 218 G~l~v~~~~~~~~i~~~~~~g~~~~~~~------------------~~----------~~~~~~~~i~~~~~g~l~vs~~ 269 (286)
T 1q7f_A 218 GEILIADNHNNFNLTIFTQDGQLISALE------------------SK----------VKHAQCFDVALMDDGSVVLASK 269 (286)
T ss_dssp CCEEEEECSSSCEEEEECTTSCEEEEEE------------------ES----------SCCSCEEEEEEETTTEEEEEET
T ss_pred CCEEEEeCCCCEEEEEECCCCCEEEEEc------------------cc----------CCCCcceeEEECCCCcEEEECC
Confidence 99888888776 9999997543222111 00 1112467899999999998887
Q ss_pred CCeEEEEEe
Q 001391 439 HGYLYHTKL 447 (1088)
Q Consensus 439 ~g~i~~~~~ 447 (1088)
++.|..|++
T Consensus 270 ~~~v~v~~~ 278 (286)
T 1q7f_A 270 DYRLYIYRY 278 (286)
T ss_dssp TTEEEEEEC
T ss_pred CCeEEEEEc
Confidence 777876654
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.41 E-value=2.7e-11 Score=149.96 Aligned_cols=283 Identities=10% Similarity=-0.003 Sum_probs=178.1
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEE--e-CCeEEEEECCCCeeEEEEeeeCCcceE---------EEEecccccccCCC
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAG--S-GSQVLLYDLEAGTLIRPFQVFHGIRLH---------GISCNFINCTEGSV 83 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag--~-d~~I~vwd~~tg~~~~~~~~~~~~~V~---------~i~~s~~~~~~~~d 83 (1088)
|...|..++|+ ++ +.+++.. . ++...||....+.....+..+.. .+. ...|+.. ||
T Consensus 22 ~~~~~~~~~~s--~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~S-----PD 89 (662)
T 3azo_A 22 RSGRPACVGAV--GD----EVWWVAPRPAEAGRATLVRRRADGAEESALPAPW-NVRNRVFEYSGFPWAGVPR-----PA 89 (662)
T ss_dssp TCSCCEEEEEE--TT----EEEEEEEETTTTTEEEEEEECTTSCEEESSCTTC-CBCCCGGGTCCCCEEEECC-----SS
T ss_pred cCCccceeEEc--CC----eEEEEecCcccCCcEEEEEECCCCCcceeCCCCc-cccccccccCCccceeeee-----cC
Confidence 45678999999 77 5555655 3 57899999655544555554332 344 3434311 77
Q ss_pred ccceeeE-EEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccC-----CCCcEEEEEEecccCCCCEEEEEEcC-
Q 001391 84 STRVTFE-VALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR-----LSHWVFDVCFLKVCNGNRSLAIGCSD- 156 (1088)
Q Consensus 84 ~~~~~~~-la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~-----h~~~I~~v~f~p~~~d~~~lasgs~D- 156 (1088)
| .. |+.+.++..+||.++.... + ......+.. |...+.+++|+| ||+.|+.++.|
T Consensus 90 g----~~~la~~~~~~~~l~~~~~~~~-g----------~~~~~~l~~~~~~~~~~~~~~~~~sp---Dg~~l~~~~~~~ 151 (662)
T 3azo_A 90 G----GPLLVFTHFGDQRLYAFEPDAP-G----------GAVPRPLTPVSAVGGGLRWADPVLLP---ERGEVWCMAEEF 151 (662)
T ss_dssp S----SCEEEEEBTTTCCEEEECTTST-T----------CCCCEECSCCCCSTTCEEEEEEEEET---TTTEEEEEEEEE
T ss_pred C----CeEEEEEECCCCeEEEEcCCCC-C----------CCCCEeccCCccCCCCccccCcEECC---CCCEEEEEEecc
Confidence 7 44 6666655555666553200 0 011222333 677899999999 99999998877
Q ss_pred ---------CcEEEEEcCC------CceEEEec-cCCceeEEEEeeecCCCCCcEEEEEecC--------CeEEEEEecc
Q 001391 157 ---------NSIRVWDISN------SSIILEVH-SPERCLLYSMKLWGDNLEALRIASGTIY--------NEIIVWKVDW 212 (1088)
Q Consensus 157 ---------g~V~iWd~~~------~~~~~~~~-~~~~~~~~s~~~~~~s~~~~~l~sg~~d--------g~I~vwd~~~ 212 (1088)
..|++||+.+ ++. ..+. .+. ....++.+ +|||..|+..+.+ ..|.+||+..
T Consensus 152 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~-~~~~~~~~---SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~ 226 (662)
T 3azo_A 152 TGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAH-RFVTGPRL---SPDGRQAVWLAWDHPRMPWEGTELKTARVTE 226 (662)
T ss_dssp CSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCS-SEECCCEE---CTTSSEEEEEEECTTCCTTTCEEEEEEEECT
T ss_pred cCCCCCCceeEEEEEECCCCccccCCce-eEEEecCC-CcccCceE---CCCCCEEEEEECCCCCCCCCCcEEEEEEECC
Confidence 5899999987 544 3333 222 22333343 7999999877755 3799999870
Q ss_pred CccccCCCCCCCccCCCCCCCCceeEecccccce---eeeEEEeCCCCCEEEEEEcCCCCEEEEEECCC--cEEEEEcCC
Q 001391 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA---VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR--SARIWEVRA 287 (1088)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~---~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg--~v~iWd~~~ 287 (1088)
++ .......+|...+..++|+|||++++++..++ .|.+||+.+
T Consensus 227 --------------------------------~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~ 274 (662)
T 3azo_A 227 --------------------------------DGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT 274 (662)
T ss_dssp --------------------------------TSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTT
T ss_pred --------------------------------CCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCC
Confidence 12 33333445678999999999999888888888 455555544
Q ss_pred CcccCCCCceeeeceeeeccCcc--------eEEEEEC--CCEEEEEeCCCcEEEE--cCCCceeEEEcccCCCCeEEE-
Q 001391 288 EYWKDSDSIEEVGSSVLYGHNAR--------VWDCCLT--DSFIITAGEDCTCRVW--GSDGKQLKMIKEHIGRGIWRC- 354 (1088)
Q Consensus 288 ~~~~~~~~~~~i~~~~~~~h~~~--------I~~v~~~--~~~l~sg~~Dg~i~vW--d~~~~~~~~~~~h~~~~V~~l- 354 (1088)
++. +. ...++... +..++|+ +.+++++.. +.+++| |..+..+..+..|.+ .+..+
T Consensus 275 ~~~------~~----l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~-~~~~~~ 342 (662)
T 3azo_A 275 GAA------TQ----LCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDAAGPWT-EWAATL 342 (662)
T ss_dssp CCE------EE----SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEECCSSCC-EEEEEE
T ss_pred Cce------ee----cccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEecCCCC-eEEEEE
Confidence 322 11 11122111 4567886 578888888 999999 555566788887766 57776
Q ss_pred EEcCCCCEEEEEeCCCCEEEEEc
Q 001391 355 LYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 355 ~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
+++.+.-++++++.+....+|.+
T Consensus 343 s~~~~~~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 343 TVSGTRAVGVAASPRTAYEVVEL 365 (662)
T ss_dssp EEETTEEEEEEEETTEEEEEEEE
T ss_pred ecCCCEEEEEEcCCCCCCEEEEE
Confidence 55544445555666665556544
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.40 E-value=2.9e-11 Score=135.64 Aligned_cols=245 Identities=11% Similarity=0.064 Sum_probs=169.1
Q ss_pred eeeeeEEEEEeccCCCCCCCCEEEEEeCC-------------------------eEEEEECCCCeeEEEEeeeCCcceEE
Q 001391 16 YLGEISALCFVHLPSHLSSLPFLLAGSGS-------------------------QVLLYDLEAGTLIRPFQVFHGIRLHG 70 (1088)
Q Consensus 16 ~~~~V~~v~fs~~pd~~~~~~~laag~d~-------------------------~I~vwd~~tg~~~~~~~~~~~~~V~~ 70 (1088)
..+.|.+|+++ |+ ++++++..+. +|.+||..+|+.+..+....-....+
T Consensus 22 ~l~~v~~va~d--~~----G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~g 95 (329)
T 3fvz_A 22 LPGQVSGVALD--SK----NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHG 95 (329)
T ss_dssp CCSCEEEEEEC--TT----CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEE
T ss_pred ecCCceEEEEC--CC----CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceE
Confidence 45789999999 98 8888887743 79999999999877665333346899
Q ss_pred EEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeec---------cCCCCcEEEEEE
Q 001391 71 ISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL---------PRLSHWVFDVCF 140 (1088)
Q Consensus 71 i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l---------~~h~~~I~~v~f 140 (1088)
++++ ++| .++++ .+++.|++|+..... ..+..+ .++-.....+++
T Consensus 96 ia~d-------~~g----~l~v~d~~~~~v~~~~~~g~~--------------~~~~~~~~~~~~g~~~~~~~~P~~ia~ 150 (329)
T 3fvz_A 96 LSID-------TDG----NYWVTDVALHQVFKLDPHSKE--------------GPLLILGRSMQPGSDQNHFCQPTDVAV 150 (329)
T ss_dssp EEEC-------TTS----CEEEEETTTTEEEEECTTCSS--------------CCSEEESBTTBCCCSTTCCSSEEEEEE
T ss_pred EEEC-------CCC----CEEEEECCCCEEEEEeCCCCe--------------EEEEEecccCCCCCCccccCCCcEEEE
Confidence 9999 777 44444 457999999976321 112222 345567899999
Q ss_pred ecccCCCCEEEEEE-cCCcEEEEEcCCCceEEEeccCC---------ceeEEEEeeecCCCC-CcEEEEEecCCeEEEEE
Q 001391 141 LKVCNGNRSLAIGC-SDNSIRVWDISNSSIILEVHSPE---------RCLLYSMKLWGDNLE-ALRIASGTIYNEIIVWK 209 (1088)
Q Consensus 141 ~p~~~d~~~lasgs-~Dg~V~iWd~~~~~~~~~~~~~~---------~~~~~s~~~~~~s~~-~~~l~sg~~dg~I~vwd 209 (1088)
+| .++.++++.+ .++.|++|+ .+++.+..+.... ......+++ +++ +.++++...++.|++|+
T Consensus 151 ~~--~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~---d~~~g~l~v~d~~~~~I~~~~ 224 (329)
T 3fvz_A 151 EP--STGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLAL---VPHLDQLCVADRENGRIQCFK 224 (329)
T ss_dssp CT--TTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEE---ETTTTEEEEEETTTTEEEEEE
T ss_pred eC--CCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEE---ECCCCEEEEEECCCCEEEEEE
Confidence 98 1355666665 689999999 5666666654211 112445555 466 77788888899999999
Q ss_pred eccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE--eCCCCCEEEEEEcC------CCCEEEEEECCCcEE
Q 001391 210 VDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL--VGHEGSIFRIEWSS------CGSKLVSVSDDRSAR 281 (1088)
Q Consensus 210 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~gh~~~V~~v~~sp------~g~~l~s~s~Dg~v~ 281 (1088)
.. +++.+..+ .++...+.+++|+| ++...++.+.+..|+
T Consensus 225 ~~---------------------------------~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~ 271 (329)
T 3fvz_A 225 TD---------------------------------TKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGF 271 (329)
T ss_dssp TT---------------------------------TCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEE
T ss_pred CC---------------------------------CCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEE
Confidence 87 45555555 35667889999999 333333333455899
Q ss_pred EEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCC
Q 001391 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDG 337 (1088)
Q Consensus 282 iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~ 337 (1088)
+|+..+++. ...+. ...++...+..++++ +.++++...++.|++|++++
T Consensus 272 ~~~~~~g~~-----~~~~~--~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 272 VMNFSSGEI-----IDVFK--PVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEETTTCCE-----EEEEC--CSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEcCCCeE-----EEEEc--CCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 999988643 11111 113566778999998 55778888899999999844
No 173
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.35 E-value=5.6e-10 Score=124.96 Aligned_cols=266 Identities=8% Similarity=-0.051 Sum_probs=180.1
Q ss_pred CCCCceEEecCCCceee-------------eeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcc
Q 001391 2 GKKDLSEWRLDVGQYLG-------------EISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIR 67 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~~~~-------------~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~ 67 (1088)
++++|.++|..+++... ....+++. .+ ++.++.. ++.|.+||..+++.+.++... ..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~-----~lyv~~~~~~~v~viD~~t~~~~~~i~~~--~~ 85 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DG-----IGWIVVNNSHVIFAIDINTFKEVGRITGF--TS 85 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TT-----EEEEEEGGGTEEEEEETTTCCEEEEEECC--SS
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CC-----EEEEEEcCCCEEEEEECcccEEEEEcCCC--CC
Confidence 47899999999987332 24567777 43 4444444 599999999999999988643 35
Q ss_pred eEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCC-----CCcEEEEEEe
Q 001391 68 LHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRL-----SHWVFDVCFL 141 (1088)
Q Consensus 68 V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h-----~~~I~~v~f~ 141 (1088)
..+++++ +++ .+.++. .++.|.+||..+. +....+... ......+++
T Consensus 86 p~~i~~~-------~~g----~lyv~~~~~~~v~~iD~~t~---------------~~~~~i~~g~~~~~~~~p~~i~~- 138 (328)
T 3dsm_A 86 PRYIHFL-------SDE----KAYVTQIWDYRIFIINPKTY---------------EITGYIECPDMDMESGSTEQMVQ- 138 (328)
T ss_dssp EEEEEEE-------ETT----EEEEEEBSCSEEEEEETTTT---------------EEEEEEECTTCCTTTCBCCCEEE-
T ss_pred CcEEEEe-------CCC----eEEEEECCCCeEEEEECCCC---------------eEEEEEEcCCccccCCCcceEEE-
Confidence 8999998 666 555555 6899999998753 233322211 124566777
Q ss_pred cccCCCCEEEEEE-cCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecC----------CeEEEEEe
Q 001391 142 KVCNGNRSLAIGC-SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY----------NEIIVWKV 210 (1088)
Q Consensus 142 p~~~d~~~lasgs-~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d----------g~I~vwd~ 210 (1088)
. ++.++++.. .++.|.++|+.+++.+.++...... ..+.+ ++++.++++...+ +.|.++|.
T Consensus 139 ~---~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p--~~i~~---~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~ 210 (328)
T 3dsm_A 139 Y---GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQP--TSLVM---DKYNKMWTITDGGYEGSPYGYEAPSLYRIDA 210 (328)
T ss_dssp E---TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCB--CCCEE---CTTSEEEEEBCCBCTTCSSCBCCCEEEEEET
T ss_pred E---CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCc--cceEE---cCCCCEEEEECCCccCCccccCCceEEEEEC
Confidence 4 555555544 4899999999999888777543221 22333 5778776666544 78999998
Q ss_pred ccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCC-CCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 001391 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH-EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (1088)
Q Consensus 211 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh-~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~ 289 (1088)
. +.+....+.-. ......++|+|+++++..+.. .|.+||..+++
T Consensus 211 ~---------------------------------t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~ 255 (328)
T 3dsm_A 211 E---------------------------------TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADR 255 (328)
T ss_dssp T---------------------------------TTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSS
T ss_pred C---------------------------------CCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCc
Confidence 7 44444444422 246899999999999887755 89999998764
Q ss_pred ccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEE----eCCCcEEEEcCCCceeEEEcccCCCCeEEEEE
Q 001391 290 WKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITA----GEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLY 356 (1088)
Q Consensus 290 ~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg----~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~ 356 (1088)
. . ... ....+......++++ +.++++. ..++.|.+||.+|+.+.++..-. .-..++|
T Consensus 256 ~-----~-~~~--~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~~G~--~P~~~~~ 319 (328)
T 3dsm_A 256 V-----P-VRP--FLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYVGI--IPGAFCW 319 (328)
T ss_dssp C-----C-SSC--SBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEEEEE--SEEEEEE
T ss_pred e-----e-eee--eecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEEecc--CcceEEE
Confidence 3 1 000 111124568889996 3455665 57899999999998888876433 3456665
No 174
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.33 E-value=5.1e-10 Score=125.41 Aligned_cols=238 Identities=9% Similarity=0.090 Sum_probs=165.5
Q ss_pred ceEEEEecccccccCCCccceeeEEEEEC-C------------------------CEEEEEEeccCCCCCCCCCCccccc
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFG-E------------------------KRVKLFELNFELSPNSQYQPETCVN 121 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d------------------------~~v~iw~l~~~~~~~~~~~~~~~~~ 121 (1088)
.+.+++++ ++| .++++.. + ++|.+||..+.
T Consensus 25 ~v~~va~d-------~~G----~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g-------------- 79 (329)
T 3fvz_A 25 QVSGVALD-------SKN----NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA-------------- 79 (329)
T ss_dssp CEEEEEEC-------TTC----CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC--------------
T ss_pred CceEEEEC-------CCC----CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC--------------
Confidence 58999999 777 4555544 4 26888887642
Q ss_pred cceeeec-cCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc-eEEEecc--------CCceeEEEEeeecCCC
Q 001391 122 LSLVQSL-PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-IILEVHS--------PERCLLYSMKLWGDNL 191 (1088)
Q Consensus 122 ~~~~~~l-~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~-~~~~~~~--------~~~~~~~s~~~~~~s~ 191 (1088)
+.+..+ .++-.....++++| +++++++...++.|++||..... .+..+.. ........+++ ++
T Consensus 80 -~~~~~~~~~~~~~p~gia~d~---~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~---~~ 152 (329)
T 3fvz_A 80 -EILQSSGKNLFYLPHGLSIDT---DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAV---EP 152 (329)
T ss_dssp -CEEEEECTTTCSSEEEEEECT---TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEE---CT
T ss_pred -eEEeccCCCccCCceEEEECC---CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEE---eC
Confidence 223333 24556799999999 99988888889999999986542 4444431 11123445655 56
Q ss_pred -CCcEEEEEe-cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe----------CCCCCE
Q 001391 192 -EALRIASGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV----------GHEGSI 259 (1088)
Q Consensus 192 -~~~~l~sg~-~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~----------gh~~~V 259 (1088)
++.++++.+ .++.|++|+.. +..+..+. ++-...
T Consensus 153 ~~g~lyv~d~~~~~~I~~~~~~----------------------------------g~~~~~~~~~g~~~~~~~~~~~~p 198 (329)
T 3fvz_A 153 STGAVFVSDGYCNSRIVQFSPS----------------------------------GKFVTQWGEESSGSSPRPGQFSVP 198 (329)
T ss_dssp TTCCEEEEECSSCCEEEEECTT----------------------------------SCEEEEECEECCSSSCCTTEESCE
T ss_pred CCCeEEEEeCCCCCeEEEEcCC----------------------------------CCEEEEeccCCCCCCCCCcccCCC
Confidence 677888876 68999999954 22333332 233458
Q ss_pred EEEEEcCC-CCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEE--------eCCCcE
Q 001391 260 FRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITA--------GEDCTC 330 (1088)
Q Consensus 260 ~~v~~sp~-g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg--------~~Dg~i 330 (1088)
.+|+++|+ +..+++...++.|++|+..+++. +..+...++...+..+++++..++.. ..+.++
T Consensus 199 ~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~--------~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v 270 (329)
T 3fvz_A 199 HSLALVPHLDQLCVADRENGRIQCFKTDTKEF--------VREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQG 270 (329)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTCCE--------EEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCE
T ss_pred cEEEEECCCCEEEEEECCCCEEEEEECCCCcE--------EEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEE
Confidence 99999998 67777888899999999986532 22112235566778888875443333 234589
Q ss_pred EEEcC-CCceeEEEc---ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 331 RVWGS-DGKQLKMIK---EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 331 ~vWd~-~~~~~~~~~---~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
++|+. +++.+..+. .+.. ....++++|+|.++++...++.|++|++.+
T Consensus 271 ~~~~~~~g~~~~~~~~~~~~~~-~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 271 FVMNFSSGEIIDVFKPVRKHFD-MPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEETTTCCEEEEECCSSSCCS-SEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEEcCCCeEEEEEcCCCCccC-CeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 99998 888888874 4444 589999999998888888999999999854
No 175
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.32 E-value=1.9e-10 Score=132.05 Aligned_cols=258 Identities=9% Similarity=-0.105 Sum_probs=152.4
Q ss_pred EEEEECCCCeeEEEEeeeCCc----ceEEEEecccccccCCCccceeeEEEEEC---CCEEEEEEeccCCCCCCCCCCcc
Q 001391 46 VLLYDLEAGTLIRPFQVFHGI----RLHGISCNFINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPET 118 (1088)
Q Consensus 46 I~vwd~~tg~~~~~~~~~~~~----~V~~i~~s~~~~~~~~d~~~~~~~la~~g---d~~v~iw~l~~~~~~~~~~~~~~ 118 (1088)
....|..+|+.+..+..+... .+..++|| |||+ .++.+.. +..|.+|++....
T Consensus 12 ~~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~S-------pdG~---~l~~~~~~~g~~~l~~~d~~~~~---------- 71 (396)
T 3c5m_A 12 ETFVDSDTQVKVTRLTPTDIICHRNYFYQKCFT-------QDGK---KLLFAGDFDGNRNYYLLNLETQQ---------- 71 (396)
T ss_dssp EEEECTTTCCEEEECSCTTSCEECCCTTSCCBC-------TTSC---EEEEEECTTSSCEEEEEETTTTE----------
T ss_pred heeecCCCCcceEEEecCCCCccceeeecCcCC-------CCCC---EEEEEEecCCCceEEEEECCCCc----------
Confidence 445688888877776643221 25677888 8883 3333433 2467777776422
Q ss_pred ccccceeeeccCCCCc-EEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeE--EEEee---------
Q 001391 119 CVNLSLVQSLPRLSHW-VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLL--YSMKL--------- 186 (1088)
Q Consensus 119 ~~~~~~~~~l~~h~~~-I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~--~s~~~--------- 186 (1088)
. ..+..+... ...+.|+| |++.|+.++.++.|.+||+.+++.......+..-.. ..+.+
T Consensus 72 -----~-~~l~~~~~~~~~~~~~sp---dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 142 (396)
T 3c5m_A 72 -----A-VQLTEGKGDNTFGGFIST---DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGI 142 (396)
T ss_dssp -----E-EECCCSSCBCTTTCEECT---TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEE
T ss_pred -----E-EEeecCCCCccccceECC---CCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccc
Confidence 2 222223333 33478999 999999999999999999998876544443322100 00111
Q ss_pred ----ecCCCCCcEEEEE-----ecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCC
Q 001391 187 ----WGDNLEALRIASG-----TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG 257 (1088)
Q Consensus 187 ----~~~s~~~~~l~sg-----~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 257 (1088)
...+|++..++.. ..+..|.+||+. +++.. .+..+..
T Consensus 143 ~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~---------------------------------~g~~~-~~~~~~~ 188 (396)
T 3c5m_A 143 EILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIE---------------------------------TGELE-VIHQDTA 188 (396)
T ss_dssp EEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETT---------------------------------TCCEE-EEEEESS
T ss_pred cccccccCCCCcceeeeeeccCCCcceEEEEECC---------------------------------CCcEE-eeccCCc
Confidence 1123333333322 234455556654 33322 3335677
Q ss_pred CEEEEEEcC-CCCEEEEEECC------CcEEEEEcCCCcccCCCCceeeeceeeecc--CcceEEEEEC--CCEEEEEeC
Q 001391 258 SIFRIEWSS-CGSKLVSVSDD------RSARIWEVRAEYWKDSDSIEEVGSSVLYGH--NARVWDCCLT--DSFIITAGE 326 (1088)
Q Consensus 258 ~V~~v~~sp-~g~~l~s~s~D------g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h--~~~I~~v~~~--~~~l~sg~~ 326 (1088)
.+..+.|+| +++.|+.++.+ ..|.+||+..+.. . .+..+ ...+..++|+ +..|+.++.
T Consensus 189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~------~-----~l~~~~~~~~~~~~~~spdg~~l~~~~~ 257 (396)
T 3c5m_A 189 WLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV------R-----KIKEHAEGESCTHEFWIPDGSAMAYVSY 257 (396)
T ss_dssp CEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC------E-----ESSCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred ccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce------e-----EeeccCCCccccceEECCCCCEEEEEec
Confidence 899999999 78877776654 3588888766432 1 22222 3357788998 455666554
Q ss_pred C-----CcEEEEcCCCceeEEEcccCCCCeEEEEEcC-CCCEEEEEe----------------CCCCEEEEEcCCC
Q 001391 327 D-----CTCRVWGSDGKQLKMIKEHIGRGIWRCLYDS-LSSLLVTAG----------------FDSAIKVHQFQAF 380 (1088)
Q Consensus 327 D-----g~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~-dg~~l~tg~----------------~Dg~I~iwd~~~~ 380 (1088)
+ +.|++||+.+.....+....+ .. +.|+| +|++++.++ .++.|.+||+.+.
T Consensus 258 ~~~~~~~~l~~~d~~~g~~~~l~~~~~--~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 258 FKGQTDRVIYKANPETLENEEVMVMPP--CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp ETTTCCEEEEEECTTTCCEEEEEECCS--EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred CCCCccceEEEEECCCCCeEEeeeCCC--CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence 3 449999994333333332222 33 88999 999888765 3467889998653
No 176
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.31 E-value=7.9e-09 Score=113.28 Aligned_cols=287 Identities=8% Similarity=-0.054 Sum_probs=187.5
Q ss_pred CCCceEEecCCCceeeeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEee-eCCcceEEEEeccccccc
Q 001391 3 KKDLSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQV-FHGIRLHGISCNFINCTE 80 (1088)
Q Consensus 3 d~~i~iWdl~~g~~~~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~-~~~~~V~~i~~s~~~~~~ 80 (1088)
++.+..|.+... ...+.++++. |+ +++.++.. ++.|.+||.. ++.. .+.. .....++++++.
T Consensus 2 ~g~~~~~~~~~~--~~~~~~i~~d--~~----g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~------ 65 (299)
T 2z2n_A 2 EFKLQELNLTNQ--DTGPYGITVS--DK----GKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTIS------ 65 (299)
T ss_dssp CEEEEEEECCSS--SCCEEEEEEC--TT----SCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEEC------
T ss_pred cceEEEEcCCCc--CCCccceEEC--CC----CCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEEC------
Confidence 455666766543 2568999999 88 78777766 5899999988 5543 3332 133468999998
Q ss_pred CCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcE
Q 001391 81 GSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSI 159 (1088)
Q Consensus 81 ~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V 159 (1088)
+++ .+.++. +++.|..|+... . .+.. .+......+.++++.| ++.+.++...++.|
T Consensus 66 -~~g----~l~v~~~~~~~i~~~~~~g-~-------------~~~~-~~~~~~~~~~~i~~~~---~g~l~v~~~~~~~i 122 (299)
T 2z2n_A 66 -SDG----EVWFTENAANKIGRITKKG-I-------------IKEY-TLPNPDSAPYGITEGP---NGDIWFTEMNGNRI 122 (299)
T ss_dssp -TTS----CEEEEETTTTEEEEECTTS-C-------------EEEE-ECSSTTCCEEEEEECT---TSCEEEEETTTTEE
T ss_pred -CCC----CEEEeCCCCCeEEEECCCC-c-------------EEEE-eCCCcCCCceeeEECC---CCCEEEEecCCceE
Confidence 776 455544 478898888651 1 1111 1223456789999998 88887777678899
Q ss_pred EEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEe
Q 001391 160 RVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1088)
Q Consensus 160 ~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 239 (1088)
..||. +++...............+.+ ++++.+.++...++.|..||.. +
T Consensus 123 ~~~d~-~g~~~~~~~~~~~~~~~~i~~---~~~g~l~v~~~~~~~i~~~~~~-g-------------------------- 171 (299)
T 2z2n_A 123 GRITD-DGKIREYELPNKGSYPSFITL---GSDNALWFTENQNNAIGRITES-G-------------------------- 171 (299)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEEE---CTTSCEEEEETTTTEEEEECTT-C--------------------------
T ss_pred EEECC-CCCEEEecCCCCCCCCceEEE---cCCCCEEEEeCCCCEEEEEcCC-C--------------------------
Confidence 99998 555433222212233445554 5677777777667888888863 1
Q ss_pred cccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--
Q 001391 240 QDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-- 317 (1088)
Q Consensus 240 ~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-- 317 (1088)
.........+...+.++++++++...++...++.|..||. +++. .. +....+...+.++++.
T Consensus 172 ------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~------~~---~~~~~~~~~~~~i~~~~~ 235 (299)
T 2z2n_A 172 ------DITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI------TE---FKIPTPNARPHAITAGAG 235 (299)
T ss_dssp ------CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE------EE---EECSSTTCCEEEEEECST
T ss_pred ------cEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE------EE---EECCCCCCCceeEEECCC
Confidence 1111112334566889999999998777777889999998 5322 11 1233455678899997
Q ss_pred CCEEEEEeCCCcEEEEcCCCceeEEE--cccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 318 DSFIITAGEDCTCRVWGSDGKQLKMI--KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 318 ~~~l~sg~~Dg~i~vWd~~~~~~~~~--~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+.+.++...++.|.+|+.+++ +..+ ..+.. .+.++++ +++.+.++.. .+.+..++.+.
T Consensus 236 g~l~v~~~~~~~i~~~d~~g~-~~~~~~~~~~~-~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 236 IDLWFTEWGANKIGRLTSNNI-IEEYPIQIKSA-EPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp TCEEEEETTTTEEEEEETTTE-EEEEECSSSSC-CEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred CCEEEeccCCceEEEECCCCc-eEEEeCCCCCC-ccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 455555557789999998664 3333 23334 5899999 8888766655 56677777643
No 177
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.29 E-value=3e-11 Score=138.77 Aligned_cols=271 Identities=13% Similarity=0.007 Sum_probs=163.4
Q ss_pred eEEEEEeccCCCCCCCCEEEEEeC----CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGSG----SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~d----~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g 95 (1088)
+..++|+ || +++|+...+ ..|.+||+.+++...... ........+.|+ |||+ .++.+..
T Consensus 38 ~~~~~~S--pd----G~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~s-------pdg~---~l~~~~~ 100 (396)
T 3c5m_A 38 FYQKCFT--QD----GKKLLFAGDFDGNRNYYLLNLETQQAVQLTE-GKGDNTFGGFIS-------TDER---AFFYVKN 100 (396)
T ss_dssp TTSCCBC--TT----SCEEEEEECTTSSCEEEEEETTTTEEEECCC-SSCBCTTTCEEC-------TTSS---EEEEEET
T ss_pred eecCcCC--CC----CCEEEEEEecCCCceEEEEECCCCcEEEeec-CCCCccccceEC-------CCCC---EEEEEEc
Confidence 6778999 99 888877652 479999999887644332 222223347788 8883 4555566
Q ss_pred CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEE-------------------EEEecccCCCCEEEEE---
Q 001391 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFD-------------------VCFLKVCNGNRSLAIG--- 153 (1088)
Q Consensus 96 d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~-------------------v~f~p~~~d~~~lasg--- 153 (1088)
++.|.+|++.... .+.+ ...+..+... ++++| +++.++.+
T Consensus 101 ~~~l~~~d~~~~~-------------~~~~--~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp---dg~~~~~~~~~ 162 (396)
T 3c5m_A 101 ELNLMKVDLETLE-------------EQVI--YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP---LTSWEKFAEFY 162 (396)
T ss_dssp TTEEEEEETTTCC-------------EEEE--EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC---CCSHHHHHHHH
T ss_pred CCcEEEEECCCCC-------------cEEE--EecccccCCCCCEEEeccCCccccccccccccCC---CCcceeeeeec
Confidence 7889999987532 1122 2223333333 34566 77766543
Q ss_pred --EcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCC-CCcEEEEEecC------CeEEEEEeccCccccCCCCCCC
Q 001391 154 --CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL-EALRIASGTIY------NEIIVWKVDWEHVAPLLNSPEG 224 (1088)
Q Consensus 154 --s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~-~~~~l~sg~~d------g~I~vwd~~~~~~~~~~~~~~~ 224 (1088)
..+..|.+||+.+++......... .+..+.+ +| ++..|+..+.+ ..|.+|++.
T Consensus 163 ~~~~~~~l~~~d~~~g~~~~~~~~~~--~~~~~~~---sp~dg~~l~~~~~~~~~~~~~~l~~~d~~------------- 224 (396)
T 3c5m_A 163 HTNPTCRLIKVDIETGELEVIHQDTA--WLGHPIY---RPFDDSTVGFCHEGPHDLVDARMWLVNED------------- 224 (396)
T ss_dssp HTCCCEEEEEEETTTCCEEEEEEESS--CEEEEEE---ETTEEEEEEEEECSCSSSCSCCCEEEETT-------------
T ss_pred cCCCcceEEEEECCCCcEEeeccCCc--ccccceE---CCCCCCEEEEEecCCCCCCCceEEEEECC-------------
Confidence 356789999999887654443221 2334444 46 66666655433 357777765
Q ss_pred ccCCCCCCCCceeEecccccceeeeEEEeCC--CCCEEEEEEcCCCCEEEEEECC-----CcEEEEEcCCCcccCCCCce
Q 001391 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH--EGSIFRIEWSSCGSKLVSVSDD-----RSARIWEVRAEYWKDSDSIE 297 (1088)
Q Consensus 225 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh--~~~V~~v~~sp~g~~l~s~s~D-----g~v~iWd~~~~~~~~~~~~~ 297 (1088)
... ...+..+ ...+..++|+|+|++|+.++.+ +.|++||+.+++. .
T Consensus 225 --------------------~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~------~ 277 (396)
T 3c5m_A 225 --------------------GSN-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN------E 277 (396)
T ss_dssp --------------------SCC-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE------E
T ss_pred --------------------CCc-eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe------E
Confidence 111 1122222 2357889999999988777554 4599999987543 2
Q ss_pred eeeceeeeccCcceEEEEEC---CCEEEEEe----------------CCCcEEEEcCCCceeEEEcccCCC---------
Q 001391 298 EVGSSVLYGHNARVWDCCLT---DSFIITAG----------------EDCTCRVWGSDGKQLKMIKEHIGR--------- 349 (1088)
Q Consensus 298 ~i~~~~~~~h~~~I~~v~~~---~~~l~sg~----------------~Dg~i~vWd~~~~~~~~~~~h~~~--------- 349 (1088)
.+. ...+ .. +.|+ +.+++.++ .+..|++||+.+.....+..+...
T Consensus 278 ~l~--~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 350 (396)
T 3c5m_A 278 EVM--VMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQ 350 (396)
T ss_dssp EEE--ECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSS
T ss_pred Eee--eCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcccccccccc
Confidence 221 1112 12 5564 45666654 347899999944334455444431
Q ss_pred -CeEEEEEcCCCCEEEEEeC-CCCEEEEEc
Q 001391 350 -GIWRCLYDSLSSLLVTAGF-DSAIKVHQF 377 (1088)
Q Consensus 350 -~V~~l~~~~dg~~l~tg~~-Dg~I~iwd~ 377 (1088)
.+..++|+|+|+.|+.++. ++...+|.+
T Consensus 351 ~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 351 ITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp TTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred CCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 1456789999998876664 666677765
No 178
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.29 E-value=4.4e-10 Score=126.69 Aligned_cols=248 Identities=7% Similarity=0.038 Sum_probs=159.2
Q ss_pred CCCceEEecCCCc--eeeeeEEEEEeccCCCCCCCCEEEEEeC----C--eEEEEECCCCeeEEEEeeeCCcceEEEEec
Q 001391 3 KKDLSEWRLDVGQ--YLGEISALCFVHLPSHLSSLPFLLAGSG----S--QVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (1088)
Q Consensus 3 d~~i~iWdl~~g~--~~~~V~~v~fs~~pd~~~~~~~laag~d----~--~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s 74 (1088)
++.|.+||+.+++ ....+..++|| || +++|+.... + .|.+||+.+++....... .. +..++|+
T Consensus 42 ~~~l~~~d~~~~~~~~l~~~~~~~~S--pD----g~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~--~~~~~ws 112 (347)
T 2gop_A 42 ENTIVIENLKNNARRFIENATMPRIS--PD----GKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN--IRSLEWN 112 (347)
T ss_dssp EEEEEEEETTTCCEEEEESCEEEEEC--TT----SSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE--EEEEEEC
T ss_pred cceEEEEeCCCCceEEcccCCCeEEC--CC----CCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC--ccceeEC
Confidence 4568999999886 33678889999 99 888887652 2 488889988876554443 32 8999999
Q ss_pred ccccccCCCccceeeEEEEEC---------------------------CCEEEEEEeccCCCCCCCCCCccccccceeee
Q 001391 75 FINCTEGSVSTRVTFEVALFG---------------------------EKRVKLFELNFELSPNSQYQPETCVNLSLVQS 127 (1088)
Q Consensus 75 ~~~~~~~~d~~~~~~~la~~g---------------------------d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~ 127 (1088)
|||+ .++.++. ...|.+|++.... .+..
T Consensus 113 -------pdg~---~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~---------------~~~~ 167 (347)
T 2gop_A 113 -------EDSR---KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE---------------VIEE 167 (347)
T ss_dssp -------TTSS---EEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE---------------EEEE
T ss_pred -------CCCC---EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe---------------EEee
Confidence 8873 3444332 2467778876432 2122
Q ss_pred ccCCCCcEEEEEEecccCCCCEEEEEEcCC-------cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEe
Q 001391 128 LPRLSHWVFDVCFLKVCNGNRSLAIGCSDN-------SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (1088)
Q Consensus 128 l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg-------~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~ 200 (1088)
+.. . .+..++|+| |+ +++++..++ ...||.+.+++ ...+..+ ....+. +|++..|+.++
T Consensus 168 l~~-~-~~~~~~~sp---dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~--~~~~~~-----spdg~~l~~~~ 233 (347)
T 2gop_A 168 FEK-P-RFSSGIWHR---DK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK--VSFYAV-----DSDGERILLYG 233 (347)
T ss_dssp EEE-E-TTCEEEEET---TE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE--ESEEEE-----EECSSCEEEEE
T ss_pred ecC-C-CcccccCCC---Ce-EEEEEecccccccccccccEEEeCCCc-eEEeccC--cceeeE-----CCCCCEEEEEE
Confidence 222 2 688999999 99 887776542 44555555443 3333322 122222 57888777766
Q ss_pred cC--------CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEE-EEEcCCCCEE
Q 001391 201 IY--------NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFR-IEWSSCGSKL 271 (1088)
Q Consensus 201 ~d--------g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~-v~~sp~g~~l 271 (1088)
.+ ..|.+|| . ++......+|...+.. +.|+ ++ .+
T Consensus 234 ~~~~~~~~~~~~l~~~d-~----------------------------------~~~~~l~~~~~~~~~~~~~~s-dg-~~ 276 (347)
T 2gop_A 234 KPEKKYMSEHNKLYIYD-G----------------------------------KEVMGILDEVDRGVGQAKIKD-GK-VY 276 (347)
T ss_dssp CCSSSCCCSSCEEEEEC-S----------------------------------SCEEESSTTCCSEEEEEEEET-TE-EE
T ss_pred ccccCCccccceEEEEC-C----------------------------------CceEeccccCCcccCCccEEc-Cc-EE
Confidence 43 3566666 3 1122223456677886 9999 88 88
Q ss_pred EEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcE-EEEcCCCceeEEEcccCC
Q 001391 272 VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTC-RVWGSDGKQLKMIKEHIG 348 (1088)
Q Consensus 272 ~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i-~vWd~~~~~~~~~~~h~~ 348 (1088)
++++.++.++|| +.+++ .. .+..+...|.+++|++.++++++.++.. .+|.+++ ....+..|..
T Consensus 277 ~~~~~~~~~~l~-~~~g~--------~~---~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~g-~~~~lt~~n~ 341 (347)
T 2gop_A 277 FTLFEEGSVNLY-IWDGE--------IK---PIAKGRHWIMGFDVDEIVVYLKETATRLRELFTWDG-EEKQLTDYND 341 (347)
T ss_dssp EEEEETTEEEEE-EESSS--------EE---EEECSSSEEEEEEESSSEEEEEECSSSCCEEEEESS-SEEECCCTTS
T ss_pred EEEecCCcEEEE-EcCCc--------eE---EEecCCCeEEeeeeeCcEEEEEcCCCChHHheEeCC-cEEEeccccH
Confidence 999999999999 87432 21 3444577889999988566677777654 6666553 3455555543
No 179
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.28 E-value=4.9e-10 Score=125.58 Aligned_cols=271 Identities=11% Similarity=0.024 Sum_probs=173.3
Q ss_pred eeeEEEEEeccCCCCCCCCEEEE-EeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE-C
Q 001391 18 GEISALCFVHLPSHLSSLPFLLA-GSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-G 95 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laa-g~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-g 95 (1088)
..|.+++|+ |+ ...++. +.++.++.| .++....+..+.. .+.+++|+ +++ .++++. .
T Consensus 6 ~~~~~~~~~--~~----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~-------~~g----~l~~~~~~ 64 (333)
T 2dg1_A 6 QDLPTLFYS--GK----SNSAVPIISESELQTI---TAEPWLEISKKGL-QLEGLNFD-------RQG----QLFLLDVF 64 (333)
T ss_dssp CCCCBCCSC--GG----GGCSSCCCCGGGSCEE---ECEEEEEEESSCC-CEEEEEEC-------TTS----CEEEEETT
T ss_pred cccceeeec--CC----ccceeEEeecccCccc---ccceeEEEeccCc-cccCcEEC-------CCC----CEEEEECC
Confidence 457788898 77 444444 446889999 4566666665444 57999998 777 555544 4
Q ss_pred CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcC----CcEEEEEcCCCceEE
Q 001391 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD----NSIRVWDISNSSIIL 171 (1088)
Q Consensus 96 d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~D----g~V~iWd~~~~~~~~ 171 (1088)
++.|.+|+.+... .......+...+.+++++| +++++++...+ +.|.+||..++....
T Consensus 65 ~~~i~~~d~~~~~---------------~~~~~~~~~~~~~~i~~~~---dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~ 126 (333)
T 2dg1_A 65 EGNIFKINPETKE---------------IKRPFVSHKANPAAIKIHK---DGRLFVCYLGDFKSTGGIFAATENGDNLQD 126 (333)
T ss_dssp TCEEEEECTTTCC---------------EEEEEECSSSSEEEEEECT---TSCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred CCEEEEEeCCCCc---------------EEEEeeCCCCCcceEEECC---CCcEEEEeCCCCCCCceEEEEeCCCCEEEE
Confidence 7899999876432 2222224567899999999 99887777666 689999998876653
Q ss_pred Eecc-CCceeEEEEeeecCCCCCcEEEEEec------CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccc
Q 001391 172 EVHS-PERCLLYSMKLWGDNLEALRIASGTI------YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH 244 (1088)
Q Consensus 172 ~~~~-~~~~~~~s~~~~~~s~~~~~l~sg~~------dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 244 (1088)
.+.. ........+.+ ++++.++++... .+.|..++..
T Consensus 127 ~~~~~~~~~~~~~i~~---d~~g~l~v~~~~~~~~~~~~~l~~~~~~--------------------------------- 170 (333)
T 2dg1_A 127 IIEDLSTAYCIDDMVF---DSKGGFYFTDFRGYSTNPLGGVYYVSPD--------------------------------- 170 (333)
T ss_dssp EECSSSSCCCEEEEEE---CTTSCEEEEECCCBTTBCCEEEEEECTT---------------------------------
T ss_pred EEccCccCCcccceEE---CCCCCEEEEeccccccCCCceEEEEeCC---------------------------------
Confidence 3321 12233455555 567777766543 2334444433
Q ss_pred ceeeeEEEeCCCCCEEEEEEcCCCCEE-EEEECCCcEEEEEcCCC-cccCCCCceeeec---eeeeccCcceEEEEEC--
Q 001391 245 TAVNLFRLVGHEGSIFRIEWSSCGSKL-VSVSDDRSARIWEVRAE-YWKDSDSIEEVGS---SVLYGHNARVWDCCLT-- 317 (1088)
Q Consensus 245 ~~~~~~~~~gh~~~V~~v~~sp~g~~l-~s~s~Dg~v~iWd~~~~-~~~~~~~~~~i~~---~~~~~h~~~I~~v~~~-- 317 (1088)
..+ +..+..+...+..++|+|+++.+ ++.+.++.|.+|++.+. .. ...+.. ....++ ..+..++++
T Consensus 171 ~~~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~-----~~~~~~~~~~~~~~~-~~~~~i~~d~~ 243 (333)
T 2dg1_A 171 FRT-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVT-----IQPFGATIPYYFTGH-EGPDSCCIDSD 243 (333)
T ss_dssp SCC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSS-----EEEEEEEEEEECCSS-SEEEEEEEBTT
T ss_pred CCE-EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcC-----cccccceEEEecCCC-CCCCceEECCC
Confidence 111 22222334568899999999865 45556789999998642 11 111110 011222 457788887
Q ss_pred CCEEEEEeCCCcEEEEcCCCceeEEEcccCC-----CCeEEEEEcCCCCEEEEEeCCC
Q 001391 318 DSFIITAGEDCTCRVWGSDGKQLKMIKEHIG-----RGIWRCLYDSLSSLLVTAGFDS 370 (1088)
Q Consensus 318 ~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~-----~~V~~l~~~~dg~~l~tg~~Dg 370 (1088)
+.++++...++.|.+|+.+++.+..+..+.. ..+.+++|+|++..|+.++.++
T Consensus 244 G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 244 DNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp CCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 5677777778999999998887777754432 0378999999987776665553
No 180
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.28 E-value=1e-10 Score=144.84 Aligned_cols=268 Identities=10% Similarity=-0.017 Sum_probs=156.6
Q ss_pred CCCCceEEecCCCc-------eeeeeE---------EEEE--eccCCCCCCCCE-EEEEeC--CeEEEEECC--C-CeeE
Q 001391 2 GKKDLSEWRLDVGQ-------YLGEIS---------ALCF--VHLPSHLSSLPF-LLAGSG--SQVLLYDLE--A-GTLI 57 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~-------~~~~V~---------~v~f--s~~pd~~~~~~~-laag~d--~~I~vwd~~--t-g~~~ 57 (1088)
+|+...||....+. +...|. +..| | || +++ |+.+.+ ..|.+|++. + ++ .
T Consensus 45 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~S--PD----g~~~la~~~~~~~~l~~~~~~~~g~~~-~ 117 (662)
T 3azo_A 45 EAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPR--PA----GGPLLVFTHFGDQRLYAFEPDAPGGAV-P 117 (662)
T ss_dssp TTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECC--SS----SSCEEEEEBTTTCCEEEECTTSTTCCC-C
T ss_pred cCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeee--cC----CCeEEEEEECCCCeEEEEcCCCCCCCC-C
Confidence 46678899854332 112333 3333 5 78 777 777664 567777765 2 43 3
Q ss_pred EEEeee----CCcceEEEEecccccccCCCccceeeEEEEECC----------CEEEEEEeccCCCCCCCCCCccccccc
Q 001391 58 RPFQVF----HGIRLHGISCNFINCTEGSVSTRVTFEVALFGE----------KRVKLFELNFELSPNSQYQPETCVNLS 123 (1088)
Q Consensus 58 ~~~~~~----~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd----------~~v~iw~l~~~~~~~~~~~~~~~~~~~ 123 (1088)
..+... +...+..++|| |||+ .++.+..+ ..|.+|++...... ...
T Consensus 118 ~~l~~~~~~~~~~~~~~~~~s-------pDg~---~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------~~~ 177 (662)
T 3azo_A 118 RPLTPVSAVGGGLRWADPVLL-------PERG---EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA----------DRS 177 (662)
T ss_dssp EECSCCCCSTTCEEEEEEEEE-------TTTT---EEEEEEEEECSSSTTCEEEEEEEEETTSTTTT----------CGG
T ss_pred EeccCCccCCCCccccCcEEC-------CCCC---EEEEEEecccCCCCCCceeEEEEEECCCCccc----------cCC
Confidence 444432 34468899999 8883 44444444 57889988741000 001
Q ss_pred eeeecc-CCCCcEEEEEEecccCCCCEEEEEEcCC--------cEEEEEcC-CCc--eEEEeccCCceeEEEEeeecCCC
Q 001391 124 LVQSLP-RLSHWVFDVCFLKVCNGNRSLAIGCSDN--------SIRVWDIS-NSS--IILEVHSPERCLLYSMKLWGDNL 191 (1088)
Q Consensus 124 ~~~~l~-~h~~~I~~v~f~p~~~d~~~lasgs~Dg--------~V~iWd~~-~~~--~~~~~~~~~~~~~~s~~~~~~s~ 191 (1088)
....+. .+...+..++|+| ||++|+.++.++ .|.+||+. ++. ....+.........++.+ ++
T Consensus 178 ~~~~l~~~~~~~~~~~~~Sp---DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~---sp 251 (662)
T 3azo_A 178 AVRELSDDAHRFVTGPRLSP---DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEW---AP 251 (662)
T ss_dssp GSEESSCSCSSEECCCEECT---TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEE---CT
T ss_pred ceeEEEecCCCcccCceECC---CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEE---CC
Confidence 123344 5667889999999 999999887553 79999998 562 333333322233555655 67
Q ss_pred CCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCC--------EEEEE
Q 001391 192 EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGS--------IFRIE 263 (1088)
Q Consensus 192 ~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--------V~~v~ 263 (1088)
|+.+++++..++...||.+... .++......++... +..++
T Consensus 252 dg~l~~~~~~~~~~~l~~~~~~-------------------------------~~~~~~l~~~~~~~~~p~w~~~~~~~~ 300 (662)
T 3azo_A 252 DGSLIVATDRTGWWNLHRVDPA-------------------------------TGAATQLCRREEEFAGPLWTPGMRWFA 300 (662)
T ss_dssp TSCEEEEECTTSSCEEEEECTT-------------------------------TCCEEESSCCSSBSSCCCCSTTCCSEE
T ss_pred CCeEEEEECCCCCeEEEEEECC-------------------------------CCceeecccccccccCccccccCceEe
Confidence 8888888888885555544300 11111111122111 45789
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEE-EECCC-EE-EEEeCCCc--EEEEcCCCc
Q 001391 264 WSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDC-CLTDS-FI-ITAGEDCT--CRVWGSDGK 338 (1088)
Q Consensus 264 ~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v-~~~~~-~l-~sg~~Dg~--i~vWd~~~~ 338 (1088)
|+|+++++++++. +.++||.+.... ..+. .+..|...+..+ .+.+. ++ ++++.+.. +.+||+.+.
T Consensus 301 ~~~~~~~~~~~~~-~~~~l~~~d~~~-------~~~~--~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 301 PLANGLIAVVHGK-GAAVLGILDPES-------GELV--DAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp ECTTSCEEEEEBS-SSCEEEEEETTT-------TEEE--ECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred EeCCCEEEEEEEc-CccEEEEEECCC-------CcEE--EecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 9999999999999 999999544211 1122 556666777777 66654 33 34455544 555566444
Q ss_pred eeEEE
Q 001391 339 QLKMI 343 (1088)
Q Consensus 339 ~~~~~ 343 (1088)
....+
T Consensus 371 ~~~~l 375 (662)
T 3azo_A 371 RARTI 375 (662)
T ss_dssp CEEEE
T ss_pred ceEEe
Confidence 44444
No 181
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.27 E-value=2e-08 Score=120.14 Aligned_cols=273 Identities=10% Similarity=-0.009 Sum_probs=179.4
Q ss_pred CCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCC
Q 001391 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (1088)
Q Consensus 35 ~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~ 113 (1088)
+.++++.. +++|.++|..+++++.++.... .++++.|+ |||+ .++++..++.|.+||+....
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~--~p~~v~~S-------pDGr---~lyv~~~dg~V~viD~~~~t----- 229 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGY--AVHISRLS-------ASGR---YLFVIGRDGKVNMIDLWMKE----- 229 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECSS--CEEEEEEC-------TTSC---EEEEEETTSEEEEEETTSSS-----
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeCCC--CccceEEC-------CCCC---EEEEEcCCCeEEEEECCCCC-----
Confidence 34444444 5999999999999999988633 58999999 8884 56666668999999985211
Q ss_pred CCCccccccceeeeccCCCCcEEEEEEe----cccCCCCEEEEEEc-CCcEEEEEcCCCceEEEeccCC----------c
Q 001391 114 YQPETCVNLSLVQSLPRLSHWVFDVCFL----KVCNGNRSLAIGCS-DNSIRVWDISNSSIILEVHSPE----------R 178 (1088)
Q Consensus 114 ~~~~~~~~~~~~~~l~~h~~~I~~v~f~----p~~~d~~~lasgs~-Dg~V~iWd~~~~~~~~~~~~~~----------~ 178 (1088)
.+.+..+.... ....++|+ | ||++++++.. +++|.++|..+.+.+..+.... .
T Consensus 230 --------~~~v~~i~~G~-~P~~ia~s~~~~p---DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~ 297 (567)
T 1qks_A 230 --------PTTVAEIKIGS-EARSIETSKMEGW---EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE 297 (567)
T ss_dssp --------CCEEEEEECCS-EEEEEEECCSTTC---TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESC
T ss_pred --------CcEeEEEecCC-CCceeEEccccCC---CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCC
Confidence 34455554433 36799999 8 9998877654 6999999999999887765221 1
Q ss_pred eeEEEEeeecCCCC-CcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCC
Q 001391 179 CLLYSMKLWGDNLE-ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG 257 (1088)
Q Consensus 179 ~~~~s~~~~~~s~~-~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 257 (1088)
..+..+.. +++ ...+++-...|.|.++|.... ....+..+ ....
T Consensus 298 ~rva~i~~---s~~~~~~vv~~~~~g~v~~vd~~~~-------------------------------~~~~v~~i-~~~~ 342 (567)
T 1qks_A 298 PRVAAILA---SHYRPEFIVNVKETGKILLVDYTDL-------------------------------NNLKTTEI-SAER 342 (567)
T ss_dssp CCEEEEEE---CSSSSEEEEEETTTTEEEEEETTCS-------------------------------SEEEEEEE-ECCS
T ss_pred CceEEEEE---cCCCCEEEEEecCCCeEEEEecCCC-------------------------------ccceeeee-eccc
Confidence 11222322 233 345566667799999998610 11112222 2345
Q ss_pred CEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCcccCCCCceeeece-eeeccCcceEEEEEC---CCEEEEEe-CCCcEE
Q 001391 258 SIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIEEVGSS-VLYGHNARVWDCCLT---DSFIITAG-EDCTCR 331 (1088)
Q Consensus 258 ~V~~v~~sp~g~~l~s~s-~Dg~v~iWd~~~~~~~~~~~~~~i~~~-~~~~h~~~I~~v~~~---~~~l~sg~-~Dg~i~ 331 (1088)
....+.|+|++++++++. .++.|.++|+.+++. ...+. . ....|.++-..+ ++ +...++.. .+++|.
T Consensus 343 ~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl-----~~~i~-vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vs 415 (567)
T 1qks_A 343 FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL-----VAIED-TGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVA 415 (567)
T ss_dssp SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE-----EEEEE-CSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEE
T ss_pred cccCceECCCCCEEEEEeCCCCeEEEEECCCCcE-----EEEEe-ccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEE
Confidence 577889999999887655 578999999998643 22221 1 122454332222 33 23445553 468999
Q ss_pred EEcC-C-------CceeEEEcccCCCCeEEEEEcCCCCEEEEEeC-------CCCEEEEEcCC
Q 001391 332 VWGS-D-------GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF-------DSAIKVHQFQA 379 (1088)
Q Consensus 332 vWd~-~-------~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~-------Dg~I~iwd~~~ 379 (1088)
++|. . .+.++++..... +-.-+..+|++++|.+... .++|.++|+.+
T Consensus 416 vid~~~~~~~~~~~kvv~~i~~~g~-g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~ 477 (567)
T 1qks_A 416 LIGTDPEGHPDNAWKILDSFPALGG-GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKA 477 (567)
T ss_dssp EEECCTTTCTTTBTSEEEEEECSCS-CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGG
T ss_pred EecCCCCCCccccCEEEEEEecCCC-CCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCc
Confidence 9998 3 356777765533 2235778999998888663 35999999854
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.26 E-value=3.2e-09 Score=119.60 Aligned_cols=238 Identities=12% Similarity=0.099 Sum_probs=151.2
Q ss_pred CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-EC-C--CE--EEEEEeccCCCCCCCCCC
Q 001391 43 GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FG-E--KR--VKLFELNFELSPNSQYQP 116 (1088)
Q Consensus 43 d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~g-d--~~--v~iw~l~~~~~~~~~~~~ 116 (1088)
++.|.+||+.+++.. .+ ..+..++|| ||| ..|+. .. + +. |.+|++...
T Consensus 42 ~~~l~~~d~~~~~~~-~l-----~~~~~~~~S-------pDg----~~la~~~~~~~~~~~~l~~~~~~~g--------- 95 (347)
T 2gop_A 42 ENTIVIENLKNNARR-FI-----ENATMPRIS-------PDG----KKIAFMRANEEKKVSEIWVADLETL--------- 95 (347)
T ss_dssp EEEEEEEETTTCCEE-EE-----ESCEEEEEC-------TTS----SEEEEEEEETTTTEEEEEEEETTTT---------
T ss_pred cceEEEEeCCCCceE-Ec-----ccCCCeEEC-------CCC----CEEEEEEeccCCCcceEEEEECCCC---------
Confidence 468999999988753 23 258899999 888 44444 32 2 44 555555432
Q ss_pred ccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcC---------------------------CcEEEEEcCCCce
Q 001391 117 ETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD---------------------------NSIRVWDISNSSI 169 (1088)
Q Consensus 117 ~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~D---------------------------g~V~iWd~~~~~~ 169 (1088)
+... +..+.. +..++|+| |++.|+.++.+ ..|.+||+.+++.
T Consensus 96 ------~~~~-l~~~~~-~~~~~wsp---dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 164 (347)
T 2gop_A 96 ------SSKK-ILEAKN-IRSLEWNE---DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV 164 (347)
T ss_dssp ------EEEE-EEEESE-EEEEEECT---TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE
T ss_pred ------ceEE-EEcCCC-ccceeECC---CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE
Confidence 1111 222233 99999999 99988887643 5789999988876
Q ss_pred EEEeccCCceeEEEEeeecCCCCCcEEEEEecCC-------eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccc
Q 001391 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN-------EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (1088)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg-------~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 242 (1088)
+..+..+ .+..+.+ ++++ +++++..++ ...||.+.
T Consensus 165 ~~~l~~~---~~~~~~~---spdg-~~~~~~~~~~~~~~~~~~~l~~~d------------------------------- 206 (347)
T 2gop_A 165 IEEFEKP---RFSSGIW---HRDK-IVVNVPHREIIPQYFKFWDIYIWE------------------------------- 206 (347)
T ss_dssp EEEEEEE---TTCEEEE---ETTE-EEEEEECCCSSCCSSCCEEEEEEE-------------------------------
T ss_pred EeeecCC---CcccccC---CCCe-EEEEEecccccccccccccEEEeC-------------------------------
Confidence 3444331 2333443 4778 777665542 34555443
Q ss_pred ccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC--------CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEE-
Q 001391 243 QHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD--------RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD- 313 (1088)
Q Consensus 243 ~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D--------g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~- 313 (1088)
.++ ...+..+ ..+..+ +|+|++|+.++.+ ..|.+|| +++ ... ...+|...+..
T Consensus 207 --~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~--------~~~--l~~~~~~~~~~~ 268 (347)
T 2gop_A 207 --DGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKE--------VMG--ILDEVDRGVGQA 268 (347)
T ss_dssp --TTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSC--------EEE--SSTTCCSEEEEE
T ss_pred --CCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCc--------eEe--ccccCCcccCCc
Confidence 111 1222333 555554 9999998887754 3677777 322 111 33455667776
Q ss_pred EEECCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCE-EEEEcC
Q 001391 314 CCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAI-KVHQFQ 378 (1088)
Q Consensus 314 v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I-~iwd~~ 378 (1088)
+.|++.++++++.++.+++| + +++... +..+.+ .|.+++++| .++++++.++.. .+|.++
T Consensus 269 ~~~sdg~~~~~~~~~~~~l~-~~~g~~~~-~~~~~~-~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 269 KIKDGKVYFTLFEEGSVNLY-IWDGEIKP-IAKGRH-WIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEETTEEEEEEEETTEEEEE-EESSSEEE-EECSSS-EEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred cEEcCcEEEEEecCCcEEEE-EcCCceEE-EecCCC-eEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 88884488899999999999 8 565543 334455 699999999 677777777765 788775
No 183
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.23 E-value=5e-08 Score=106.82 Aligned_cols=274 Identities=12% Similarity=-0.023 Sum_probs=180.0
Q ss_pred cceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEeccc
Q 001391 66 IRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (1088)
Q Consensus 66 ~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~ 144 (1088)
..++++++. ++| .+.++.. ++.|.+|+.. .. .... .+..+...+.++++.+
T Consensus 15 ~~~~~i~~d-------~~g----~l~v~~~~~~~v~~~d~~-~~-------------~~~~-~~~~~~~~~~~i~~~~-- 66 (299)
T 2z2n_A 15 TGPYGITVS-------DKG----KVWITQHKANMISCINLD-GK-------------ITEY-PLPTPDAKVMCLTISS-- 66 (299)
T ss_dssp CCEEEEEEC-------TTS----CEEEEETTTTEEEEECTT-CC-------------EEEE-ECSSTTCCEEEEEECT--
T ss_pred CCccceEEC-------CCC----CEEEEecCCCcEEEEcCC-CC-------------eEEe-cCCcccCceeeEEECC--
Confidence 468999998 777 4555544 7899999876 22 1111 1223457799999999
Q ss_pred CCCCEEEEEEcCCcEEEEEcCCCceEEEeccC-CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCC
Q 001391 145 NGNRSLAIGCSDNSIRVWDISNSSIILEVHSP-ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPE 223 (1088)
Q Consensus 145 ~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~-~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~ 223 (1088)
++.+.++...++.|..||.. ++. ..+..+ .......+.+ ++++.++++...++.|.+||..
T Consensus 67 -~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~---~~~g~l~v~~~~~~~i~~~d~~------------ 128 (299)
T 2z2n_A 67 -DGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITE---GPNGDIWFTEMNGNRIGRITDD------------ 128 (299)
T ss_dssp -TSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEE---CTTSCEEEEETTTTEEEEECTT------------
T ss_pred -CCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEE---CCCCCEEEEecCCceEEEECCC------------
Confidence 88877776668889999986 332 222222 2233455555 4677777777778889988864
Q ss_pred CccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeecee
Q 001391 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSV 303 (1088)
Q Consensus 224 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~ 303 (1088)
..........+...+.++++.+++..+++...++.|..||. +++. ..+ .
T Consensus 129 ---------------------g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~------~~~---~ 177 (299)
T 2z2n_A 129 ---------------------GKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDI------TEF---K 177 (299)
T ss_dssp ---------------------CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE------EEE---E
T ss_pred ---------------------CCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcE------EEe---e
Confidence 11111122234567899999999988888777889999998 4322 111 2
Q ss_pred eeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEE-EcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCC
Q 001391 304 LYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (1088)
Q Consensus 304 ~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~-~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~ 380 (1088)
...+...+.++++. +.+.++...++.|.+|+.+++.... ...+.. .+.+++++++|++.++...++.|..|+..+.
T Consensus 178 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~-~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~ 256 (299)
T 2z2n_A 178 IPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITEFKIPTPNA-RPHAITAGAGIDLWFTEWGANKIGRLTSNNI 256 (299)
T ss_dssp CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTC-CEEEEEECSTTCEEEEETTTTEEEEEETTTE
T ss_pred CCCCCCcceeEEECCCCCEEEEccCCceEEEECCCCcEEEEECCCCCC-CceeEEECCCCCEEEeccCCceEEEECCCCc
Confidence 23344567889987 4566665568899999996554332 222333 5899999999997777667888999987421
Q ss_pred CCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEe
Q 001391 381 LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKL 447 (1088)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~ 447 (1088)
+.....+ .....+.++++ +++.+++++..+.+..++.
T Consensus 257 -------------------~~~~~~~----------~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~ 293 (299)
T 2z2n_A 257 -------------------IEEYPIQ----------IKSAEPHGICF-DGETIWFAMECDKIGKLTL 293 (299)
T ss_dssp -------------------EEEEECS----------SSSCCEEEEEE-CSSCEEEEETTTEEEEEEE
T ss_pred -------------------eEEEeCC----------CCCCccceEEe-cCCCEEEEecCCcEEEEEc
Confidence 1111111 11235788999 8899999887777776543
No 184
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.23 E-value=1.6e-09 Score=119.28 Aligned_cols=247 Identities=11% Similarity=-0.055 Sum_probs=159.9
Q ss_pred eeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCC
Q 001391 55 TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH 133 (1088)
Q Consensus 55 ~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 133 (1088)
..+..+..... ...+++|+ |+++ .++++.. ++.|..|+... . ...+..+..
T Consensus 18 ~~~~~l~~~~~-~~eg~~~d-------~~g~---~l~~~~~~~~~i~~~~~~~----------------~-~~~~~~~~~ 69 (296)
T 3e5z_A 18 AEARRLADGFT-WTEGPVYV-------PARS---AVIFSDVRQNRTWAWSDDG----------------Q-LSPEMHPSH 69 (296)
T ss_dssp CCCEEEECCCS-SEEEEEEE-------GGGT---EEEEEEGGGTEEEEEETTS----------------C-EEEEESSCS
T ss_pred CcEEEEecCCc-cccCCeEe-------CCCC---EEEEEeCCCCEEEEEECCC----------------C-eEEEECCCC
Confidence 33344443223 47899999 6762 3555544 78999999763 2 344455677
Q ss_pred cEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCc---eeEEEEeeecCCCCCcEEEE----EecC----
Q 001391 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPER---CLLYSMKLWGDNLEALRIAS----GTIY---- 202 (1088)
Q Consensus 134 ~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~---~~~~s~~~~~~s~~~~~l~s----g~~d---- 202 (1088)
.+.+++++| +++++++...++.|.+||..+++.......... .....+++ ++++.++++ |+.+
T Consensus 70 ~~~~l~~~~---dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~---d~~G~l~vtd~~~g~~~~~~~ 143 (296)
T 3e5z_A 70 HQNGHCLNK---QGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCL---APDGSLWFSDPTYGIDKPEEG 143 (296)
T ss_dssp SEEEEEECT---TCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEE---CTTSCEEEEECSHHHHCGGGS
T ss_pred CcceeeECC---CCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEE---CCCCCEEEECCcccccccccc
Confidence 899999999 999887776678999999988875433321111 11123333 577877776 3210
Q ss_pred -------CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEE
Q 001391 203 -------NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (1088)
Q Consensus 203 -------g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s 275 (1088)
+.-.||.+. ....+..+..+.....+++|+|+++.+++.+
T Consensus 144 ~~~~~~~~~~~l~~~~---------------------------------~~g~~~~~~~~~~~~~gi~~s~dg~~lv~~~ 190 (296)
T 3e5z_A 144 YGGEMELPGRWVFRLA---------------------------------PDGTLSAPIRDRVKPNGLAFLPSGNLLVSDT 190 (296)
T ss_dssp SCCCCCSSSCEEEEEC---------------------------------TTSCEEEEECCCSSEEEEEECTTSCEEEEET
T ss_pred ccccccCCCcEEEEEC---------------------------------CCCCEEEeecCCCCCccEEECCCCCEEEEeC
Confidence 112344443 1122334456677789999999999987788
Q ss_pred CCCcEEEEEcCCCcccCCCCc-eeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeE
Q 001391 276 DDRSARIWEVRAEYWKDSDSI-EEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIW 352 (1088)
Q Consensus 276 ~Dg~v~iWd~~~~~~~~~~~~-~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~ 352 (1088)
.++.|++|++..... . .... .+..+...+..+++. +.+.++. ++.|.+|+.+++.+..+..+.. +.
T Consensus 191 ~~~~i~~~~~~~~g~-----~~~~~~--~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~~~~~~~~~~~--~~ 259 (296)
T 3e5z_A 191 GDNATHRYCLNARGE-----TEYQGV--HFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDGDELGRVLTPQT--TS 259 (296)
T ss_dssp TTTEEEEEEECSSSC-----EEEEEE--EECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTSCEEEEEECSSC--CC
T ss_pred CCCeEEEEEECCCCc-----CcCCCe--EeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCCCEEEEEECCCC--ce
Confidence 889999999873211 1 1111 223345556778887 4544444 8899999999988888877765 78
Q ss_pred EEEE-cCCCCEEEEEeCCCCEEEEEcCCC
Q 001391 353 RCLY-DSLSSLLVTAGFDSAIKVHQFQAF 380 (1088)
Q Consensus 353 ~l~~-~~dg~~l~tg~~Dg~I~iwd~~~~ 380 (1088)
+++| .|+++.|+.++.++ +.-++....
T Consensus 260 ~~~f~~~d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 260 NLCFGGPEGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp EEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred eEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence 9999 58999888888774 333344433
No 185
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.22 E-value=1.2e-09 Score=122.40 Aligned_cols=269 Identities=12% Similarity=0.033 Sum_probs=169.5
Q ss_pred ceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d 146 (1088)
.|..+.|+ +++. .++....++.++.|. .+....+..+...+.+++|+| +
T Consensus 7 ~~~~~~~~-------~~~~---~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~---~ 55 (333)
T 2dg1_A 7 DLPTLFYS-------GKSN---SAVPIISESELQTIT------------------AEPWLEISKKGLQLEGLNFDR---Q 55 (333)
T ss_dssp CCCBCCSC-------GGGG---CSSCCCCGGGSCEEE------------------CEEEEEEESSCCCEEEEEECT---T
T ss_pred ccceeeec-------CCcc---ceeEEeecccCcccc------------------cceeEEEeccCccccCcEECC---C
Confidence 47777887 4431 222335577888882 233445566777889999999 9
Q ss_pred CCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecC----CeEEEEEeccCccccCCCCC
Q 001391 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY----NEIIVWKVDWEHVAPLLNSP 222 (1088)
Q Consensus 147 ~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d----g~I~vwd~~~~~~~~~~~~~ 222 (1088)
+++++++..++.|.+||..+++.......+ ...+.++++ ++++.++++...+ +.|.+||..
T Consensus 56 g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~i~~---~~dg~l~v~~~~~~~~~~~i~~~d~~----------- 120 (333)
T 2dg1_A 56 GQLFLLDVFEGNIFKINPETKEIKRPFVSH-KANPAAIKI---HKDGRLFVCYLGDFKSTGGIFAATEN----------- 120 (333)
T ss_dssp SCEEEEETTTCEEEEECTTTCCEEEEEECS-SSSEEEEEE---CTTSCEEEEECTTSSSCCEEEEECTT-----------
T ss_pred CCEEEEECCCCEEEEEeCCCCcEEEEeeCC-CCCcceEEE---CCCCcEEEEeCCCCCCCceEEEEeCC-----------
Confidence 998888888999999999888765433222 223555655 5778777776666 689999877
Q ss_pred CCccCCCCCCCCceeEecccccceeeeEEEe--CCCCCEEEEEEcCCCCEEEEEEC------CCcEEEEEcCCCcccCCC
Q 001391 223 EGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV--GHEGSIFRIEWSSCGSKLVSVSD------DRSARIWEVRAEYWKDSD 294 (1088)
Q Consensus 223 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--gh~~~V~~v~~sp~g~~l~s~s~------Dg~v~iWd~~~~~~~~~~ 294 (1088)
.......+. .+...+..++++|+|+.+++... .+.|..++..+++.
T Consensus 121 ----------------------~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~---- 174 (333)
T 2dg1_A 121 ----------------------GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV---- 174 (333)
T ss_dssp ----------------------SCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE----
T ss_pred ----------------------CCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEE----
Confidence 222211121 24467999999999998887654 24455555443221
Q ss_pred CceeeeceeeeccCcceEEEEEC--CCEE-EEEeCCCcEEEEcC--CCceeEEE--------cccCCCCeEEEEEcCCCC
Q 001391 295 SIEEVGSSVLYGHNARVWDCCLT--DSFI-ITAGEDCTCRVWGS--DGKQLKMI--------KEHIGRGIWRCLYDSLSS 361 (1088)
Q Consensus 295 ~~~~i~~~~~~~h~~~I~~v~~~--~~~l-~sg~~Dg~i~vWd~--~~~~~~~~--------~~h~~~~V~~l~~~~dg~ 361 (1088)
. .+..+...+..++|+ +..+ ++...++.|.+|+. ++..+..+ .++ . .+..++++++|+
T Consensus 175 --~-----~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~-~~~~i~~d~~G~ 245 (333)
T 2dg1_A 175 --T-----PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-E-GPDSCCIDSDDN 245 (333)
T ss_dssp --E-----EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-S-EEEEEEEBTTCC
T ss_pred --E-----EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-C-CCCceEECCCCC
Confidence 1 222223457788898 3444 55556889999998 34433221 122 2 478899999999
Q ss_pred EEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCC-eEEEEecCC
Q 001391 362 LLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIATNHG 440 (1088)
Q Consensus 362 ~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~-~ll~~t~~g 440 (1088)
++++...++.|.+|+.++..+.. +..+.. ..++...+.+++|++++ .+++++.++
T Consensus 246 l~v~~~~~~~v~~~d~~g~~~~~------------------~~~~~~------~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 246 LYVAMYGQGRVLVFNKRGYPIGQ------------------ILIPGR------DEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEEEETTTEEEEECTTSCEEEE------------------EECTTG------GGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred EEEEEcCCCEEEEECCCCCEEEE------------------EEcCCC------ccccccCcceEEECCCCCEEEEEeCcc
Confidence 88888888999999885432111 111110 00111257889999886 677777663
No 186
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.21 E-value=1.6e-09 Score=121.32 Aligned_cols=261 Identities=8% Similarity=-0.070 Sum_probs=170.1
Q ss_pred CCeEEEEECCCCeeEEEEee-----eCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCc
Q 001391 43 GSQVLLYDLEAGTLIRPFQV-----FHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPE 117 (1088)
Q Consensus 43 d~~I~vwd~~tg~~~~~~~~-----~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~ 117 (1088)
++.|.+||.++++....+.. .-+....++.+. .+. .+++..+++.|.+||..+
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-------~~~----lyv~~~~~~~v~viD~~t----------- 73 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-------DGI----GWIVVNNSHVIFAIDINT----------- 73 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-------TTE----EEEEEGGGTEEEEEETTT-----------
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-------CCE----EEEEEcCCCEEEEEECcc-----------
Confidence 58999999999988765421 112236777776 331 445555589999999885
Q ss_pred cccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCce----eEEEEeeecCCCCC
Q 001391 118 TCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERC----LLYSMKLWGDNLEA 193 (1088)
Q Consensus 118 ~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~----~~~s~~~~~~s~~~ 193 (1088)
.+.+..+. .......+++++ ++...++...++.|.+||..+++....+..+... ....+++ .++
T Consensus 74 ----~~~~~~i~-~~~~p~~i~~~~---~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~----~~~ 141 (328)
T 3dsm_A 74 ----FKEVGRIT-GFTSPRYIHFLS---DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ----YGK 141 (328)
T ss_dssp ----CCEEEEEE-CCSSEEEEEEEE---TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE----ETT
T ss_pred ----cEEEEEcC-CCCCCcEEEEeC---CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE----ECC
Confidence 34445553 346789999998 8854444447999999999999887776533300 1112332 234
Q ss_pred cEEEEEe-cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEE
Q 001391 194 LRIASGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLV 272 (1088)
Q Consensus 194 ~~l~sg~-~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~ 272 (1088)
.++++.. .++.|.++|.. +.+.+..+.. ......++++|+|++++
T Consensus 142 ~lyv~~~~~~~~v~viD~~---------------------------------t~~~~~~i~~-g~~p~~i~~~~dG~l~v 187 (328)
T 3dsm_A 142 YVYVNCWSYQNRILKIDTE---------------------------------TDKVVDELTI-GIQPTSLVMDKYNKMWT 187 (328)
T ss_dssp EEEEEECTTCCEEEEEETT---------------------------------TTEEEEEEEC-SSCBCCCEECTTSEEEE
T ss_pred EEEEEcCCCCCEEEEEECC---------------------------------CCeEEEEEEc-CCCccceEEcCCCCEEE
Confidence 4444443 48899999998 4455555543 23457889999999887
Q ss_pred EEECC----------CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCce
Q 001391 273 SVSDD----------RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQ 339 (1088)
Q Consensus 273 s~s~D----------g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~ 339 (1088)
++..+ +.|.++|..+.+. ... ...+.......++++ +..++.+.. .|.+||. +++.
T Consensus 188 ~~~~~~~~~~~~~~~~~v~~id~~t~~v--------~~~-~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 188 ITDGGYEGSPYGYEAPSLYRIDAETFTV--------EKQ-FKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRV 256 (328)
T ss_dssp EBCCBCTTCSSCBCCCEEEEEETTTTEE--------EEE-EECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred EECCCccCCccccCCceEEEEECCCCeE--------EEE-EecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCce
Confidence 77665 7899999987532 221 111112367899998 567776654 8999998 4443
Q ss_pred eE-EEcccCCCCeEEEEEcC-CCCEEEEE----eCCCCEEEEEcCCCCC
Q 001391 340 LK-MIKEHIGRGIWRCLYDS-LSSLLVTA----GFDSAIKVHQFQAFLP 382 (1088)
Q Consensus 340 ~~-~~~~h~~~~V~~l~~~~-dg~~l~tg----~~Dg~I~iwd~~~~~~ 382 (1088)
.. .+....+.....++++| ++.+.++. ..++.|.+||.+++.+
T Consensus 257 ~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~ 305 (328)
T 3dsm_A 257 PVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLI 305 (328)
T ss_dssp CSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEE
T ss_pred eeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEE
Confidence 21 11111123588999999 55666666 5789999999875433
No 187
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.20 E-value=4.5e-08 Score=117.07 Aligned_cols=306 Identities=9% Similarity=-0.009 Sum_probs=190.5
Q ss_pred CCCCceEEecCCCceee------eeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECC--CCeeEEEEeeeCCcceEEEE
Q 001391 2 GKKDLSEWRLDVGQYLG------EISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLE--AGTLIRPFQVFHGIRLHGIS 72 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~~~~------~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~--tg~~~~~~~~~~~~~V~~i~ 72 (1088)
.++.|.++|..+++... .+..+.|+ || +++|.+++ ++.|.+||+. +++.+.++.... ...+++
T Consensus 175 ~~~~V~viD~~t~~v~~~i~~g~~p~~v~~S--pD----Gr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~--~P~~ia 246 (567)
T 1qks_A 175 DAGQIALIDGSTYEIKTVLDTGYAVHISRLS--AS----GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS--EARSIE 246 (567)
T ss_dssp TTTEEEEEETTTCCEEEEEECSSCEEEEEEC--TT----SCEEEEEETTSEEEEEETTSSSCCEEEEEECCS--EEEEEE
T ss_pred CCCeEEEEECCCCeEEEEEeCCCCccceEEC--CC----CCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC--CCceeE
Confidence 57889999999987432 35689999 99 89988877 6899999995 888888887633 468999
Q ss_pred ecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeecc----------CCCC-cEEEEEE
Q 001391 73 CNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP----------RLSH-WVFDVCF 140 (1088)
Q Consensus 73 ~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~----------~h~~-~I~~v~f 140 (1088)
|++. .+|||+ .++++ ..+++|.|+|..+. +.+..+. .|.. .+..+.+
T Consensus 247 ~s~~---~~pDGk---~l~v~n~~~~~v~ViD~~t~---------------~~~~~i~~~~~~~~~~~~~p~~rva~i~~ 305 (567)
T 1qks_A 247 TSKM---EGWEDK---YAIAGAYWPPQYVIMDGETL---------------EPKKIQSTRGMTYDEQEYHPEPRVAAILA 305 (567)
T ss_dssp ECCS---TTCTTT---EEEEEEEETTEEEEEETTTC---------------CEEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred Eccc---cCCCCC---EEEEEEccCCeEEEEECCCC---------------cEEEEEeccccccccccccCCCceEEEEE
Confidence 9820 002773 34333 34799999997642 2333221 1323 6888888
Q ss_pred ecccCCCC-EEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEe-cCCeEEEEEeccCccccC
Q 001391 141 LKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT-IYNEIIVWKVDWEHVAPL 218 (1088)
Q Consensus 141 ~p~~~d~~-~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~-~dg~I~vwd~~~~~~~~~ 218 (1088)
++ ++. .++....+|.|.++|....+.+....-..........+ ++++.+++++. .++.|.++|..
T Consensus 306 s~---~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~---~pdgr~~~va~~~sn~V~ViD~~------- 372 (567)
T 1qks_A 306 SH---YRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGL---DGSHRYFITAANARNKLVVIDTK------- 372 (567)
T ss_dssp CS---SSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEE---CTTSCEEEEEEGGGTEEEEEETT-------
T ss_pred cC---CCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceE---CCCCCEEEEEeCCCCeEEEEECC-------
Confidence 88 655 45555667999999998765433222122222334444 67888776654 67999999998
Q ss_pred CCCCCCccCCCCCCCCceeEecccccceeeeEEEeC-----CCCCEEEEEEcCCCCEE-EEEE-CCCcEEEEEcCCCccc
Q 001391 219 LNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG-----HEGSIFRIEWSSCGSKL-VSVS-DDRSARIWEVRAEYWK 291 (1088)
Q Consensus 219 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----h~~~V~~v~~sp~g~~l-~s~s-~Dg~v~iWd~~~~~~~ 291 (1088)
+++.+..+.- |.+.-..+ ++|++..+ +++. .++.|.++|..+.+..
T Consensus 373 --------------------------t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~ 425 (567)
T 1qks_A 373 --------------------------EGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHP 425 (567)
T ss_dssp --------------------------TTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT
T ss_pred --------------------------CCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCc
Confidence 3443433332 43322222 57875544 4443 4689999998873210
Q ss_pred CCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeC-------CCcEEEEcC-CC------ceeEEEcc-------cCC
Q 001391 292 DSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE-------DCTCRVWGS-DG------KQLKMIKE-------HIG 348 (1088)
Q Consensus 292 ~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~-------Dg~i~vWd~-~~------~~~~~~~~-------h~~ 348 (1088)
....+.++ .+......-..+..+ +.++..... ..+|.|+|+ +. +....+.- ..+
T Consensus 426 -~~~~kvv~--~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 502 (567)
T 1qks_A 426 -DNAWKILD--SFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQ 502 (567)
T ss_dssp -TTBTSEEE--EEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSC
T ss_pred -cccCEEEE--EEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCC
Confidence 00012333 333222222234455 456665542 459999998 33 12233421 123
Q ss_pred CCeEEEEEcCCCCEEEEEe-----CCCCEEEEEcCC
Q 001391 349 RGIWRCLYDSLSSLLVTAG-----FDSAIKVHQFQA 379 (1088)
Q Consensus 349 ~~V~~l~~~~dg~~l~tg~-----~Dg~I~iwd~~~ 379 (1088)
+.++.+.|+++|+.+..+. .++.|.++|..+
T Consensus 503 ~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t 538 (567)
T 1qks_A 503 PRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKT 538 (567)
T ss_dssp CEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred cceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCC
Confidence 3589999999999776653 379999999854
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.15 E-value=7.7e-09 Score=112.35 Aligned_cols=185 Identities=10% Similarity=0.103 Sum_probs=137.8
Q ss_pred CCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCC
Q 001391 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (1088)
Q Consensus 35 ~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~ 113 (1088)
+++|++++ ++.|++||.++|+.+.++..+....+++++++ |+| .+++ +.++.|..||.+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~-------pdG----~ilv-s~~~~V~~~d~~-------- 64 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAAT-------KAG----EILF-SYSKGAKMITRD-------- 64 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEEC-------TTS----CEEE-ECBSEEEEECTT--------
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEEC-------CCC----CEEE-eCCCCEEEECCC--------
Confidence 57888888 69999999999999999987653468999999 787 5666 678889998873
Q ss_pred CCCccccccceeeeccCC-CCcEEEEEEecccCCCCEEEEEEc-CCcEEEEEcCCCceEEEeccCCc-----eeEEEEee
Q 001391 114 YQPETCVNLSLVQSLPRL-SHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNSSIILEVHSPER-----CLLYSMKL 186 (1088)
Q Consensus 114 ~~~~~~~~~~~~~~l~~h-~~~I~~v~f~p~~~d~~~lasgs~-Dg~V~iWd~~~~~~~~~~~~~~~-----~~~~s~~~ 186 (1088)
.+.+..+..+ ...+.++.+.| +|+++++.+. ++.|..+|. +++.+.++..... .....+.
T Consensus 65 --------G~~~W~~~~~~~~~~~~~~~~~---dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~- 131 (276)
T 3no2_A 65 --------GRELWNIAAPAGCEMQTARILP---DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN- 131 (276)
T ss_dssp --------SCEEEEEECCTTCEEEEEEECT---TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE-
T ss_pred --------CCEEEEEcCCCCccccccEECC---CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce-
Confidence 3455555544 35789999999 9999998887 777777775 6777666542111 0011111
Q ss_pred ecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcC
Q 001391 187 WGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS 266 (1088)
Q Consensus 187 ~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp 266 (1088)
..+++.++++...++.|..||.. ++.+.++..+ ..+.++...+
T Consensus 132 --~~~~G~~lv~~~~~~~v~~~d~~----------------------------------G~~~w~~~~~-~~~~~~~~~~ 174 (276)
T 3no2_A 132 --KNKKGNYLVPLFATSEVREIAPN----------------------------------GQLLNSVKLS-GTPFSSAFLD 174 (276)
T ss_dssp --ECTTSCEEEEETTTTEEEEECTT----------------------------------SCEEEEEECS-SCCCEEEECT
T ss_pred --ECCCCCEEEEecCCCEEEEECCC----------------------------------CCEEEEEECC-CCccceeEcC
Confidence 25789999999999999999976 4445555543 4566788899
Q ss_pred CCCEEEEEECCCcEEEEEcCCCc
Q 001391 267 CGSKLVSVSDDRSARIWEVRAEY 289 (1088)
Q Consensus 267 ~g~~l~s~s~Dg~v~iWd~~~~~ 289 (1088)
+|..+++++.++.|..+|..+++
T Consensus 175 ~g~~~v~~~~~~~v~~~d~~tG~ 197 (276)
T 3no2_A 175 NGDCLVACGDAHCFVQLNLESNR 197 (276)
T ss_dssp TSCEEEECBTTSEEEEECTTTCC
T ss_pred CCCEEEEeCCCCeEEEEeCcCCc
Confidence 99999999998899999998764
No 189
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.12 E-value=1.3e-07 Score=103.47 Aligned_cols=273 Identities=9% Similarity=-0.039 Sum_probs=176.3
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeee-CCcceEEEEecccccccCCCccceeeEEEEE-
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFEVALF- 94 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~-~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~- 94 (1088)
..+.+|++. ++ +++.++.. ++.|.+||.. ++... +... ....+.++++. +++ .+.++.
T Consensus 20 ~~p~~i~~d--~~----g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~-------~~g----~l~v~~~ 80 (300)
T 2qc5_A 20 SGPYGITSS--ED----GKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVS-------SLG----DIWFTEN 80 (300)
T ss_dssp CCEEEEEEC--TT----SCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEEC-------TTS----CEEEEET
T ss_pred CCcceeeEC--CC----CCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEEC-------CCC----CEEEEec
Confidence 467899999 88 77777765 5899999988 65443 3321 22468899998 776 444444
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
+++.|..|+.. .. .. ...+......+.++++.+ ++.+.++...++.|..+|.. ++......
T Consensus 81 ~~~~v~~~d~~-g~-------------~~-~~~~~~~~~~~~~i~~~~---~g~l~v~~~~~~~i~~~~~~-g~~~~~~~ 141 (300)
T 2qc5_A 81 GANKIGKLSKK-GG-------------FT-EYPLPQPDSGPYGITEGL---NGDIWFTQLNGDRIGKLTAD-GTIYEYDL 141 (300)
T ss_dssp TTTEEEEECTT-SC-------------EE-EEECSSTTCCEEEEEECS---TTCEEEEETTTTEEEEECTT-SCEEEEEC
T ss_pred CCCeEEEECCC-CC-------------eE-EecCCCCCCCCccceECC---CCCEEEEccCCCeEEEECCC-CCEEEccC
Confidence 47889988866 22 11 112223346789999998 88877776668899999987 55442211
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
.........+.+ ++++.+.++....+.|..++.. ..........
T Consensus 142 ~~~~~~~~~i~~---d~~g~l~v~~~~~~~i~~~~~~---------------------------------g~~~~~~~~~ 185 (300)
T 2qc5_A 142 PNKGSYPAFITL---GSDNALWFTENQNNSIGRITNT---------------------------------GKLEEYPLPT 185 (300)
T ss_dssp SSTTCCEEEEEE---CTTSSEEEEETTTTEEEEECTT---------------------------------CCEEEEECSS
T ss_pred CCCCCCceeEEE---CCCCCEEEEecCCCeEEEECCC---------------------------------CcEEEeeCCC
Confidence 112233445554 4667766666667888888864 1111112234
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEE
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRV 332 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~v 332 (1088)
+...+.++++.++|...++....+.|..|+. ++.. ..+ ....+...+.++++. +.+.++...++.|..
T Consensus 186 ~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~------~~~---~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 255 (300)
T 2qc5_A 186 NAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEI------SEY---DIPTPNARPHAITAGKNSEIWFTEWGANQIGR 255 (300)
T ss_dssp TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE------EEE---ECSSTTCCEEEEEECSTTCEEEEETTTTEEEE
T ss_pred CCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcE------EEE---ECCCCCCCceEEEECCCCCEEEeccCCCeEEE
Confidence 4567899999999988877777788999998 3221 111 233345668889997 455555556789999
Q ss_pred EcCCCceeEE-EcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 333 WGSDGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 333 Wd~~~~~~~~-~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
|+.+++.... +..... .+.++++.++|++.++.. . .|..++.
T Consensus 256 ~~~~g~~~~~~~~~~~~-~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 256 ITNDNTIQEYQLQTENA-EPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp ECTTSCEEEEECCSTTC-CCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred ECCCCcEEEEECCccCC-ccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 9996654322 222233 578999999998666554 4 6666665
No 190
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.11 E-value=1.6e-08 Score=126.02 Aligned_cols=240 Identities=8% Similarity=0.007 Sum_probs=156.9
Q ss_pred eeEEEEEeccCCCCCCCCEEEEEeC--C----eEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 19 EISALCFVHLPSHLSSLPFLLAGSG--S----QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~laag~d--~----~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
.+.+++|| || +++||.+.+ | +|++||+.+|+.+..... . ..+.+++|+ |||+ .++.
T Consensus 126 ~~~~~~~S--PD----g~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~-~~~~~~~ws-------pDg~---~l~~ 187 (710)
T 2xdw_A 126 ALRGYAFS--ED----GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-R-VKFSCMAWT-------HDGK---GMFY 187 (710)
T ss_dssp EEEEEEEC--TT----SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-E-ECSCCEEEC-------TTSS---EEEE
T ss_pred EEEEEEEC--CC----CCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-C-cccceEEEE-------eCCC---EEEE
Confidence 58899999 99 899887652 3 899999999988764332 2 236789999 8883 4555
Q ss_pred EECCCE----------------EEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEc-
Q 001391 93 LFGEKR----------------VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS- 155 (1088)
Q Consensus 93 ~~gd~~----------------v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~- 155 (1088)
+..++. |.+|++.+.. ....++.....|...+..+.|+| ||++|+.++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~-----------~~~~~v~~~~~~~~~~~~~~~Sp---Dg~~l~~~~~~ 253 (710)
T 2xdw_A 188 NAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQ-----------SEDILCAEFPDEPKWMGGAELSD---DGRYVLLSIRE 253 (710)
T ss_dssp EECCCCSSCCSSSCCCCCCCCEEEEEETTSCG-----------GGCEEEECCTTCTTCEEEEEECT---TSCEEEEEEEC
T ss_pred EEECCccccccccccccCCCCEEEEEECCCCc-----------ccceEEeccCCCCeEEEEEEEcC---CCCEEEEEEEc
Confidence 555544 8999987532 01124444455677899999999 9999888765
Q ss_pred ----CCcEEEEEcCC------Cc-eEEEeccCCceeEEEEeeecCCCCCcEEEEEec----CCeEEEEEeccCccccCCC
Q 001391 156 ----DNSIRVWDISN------SS-IILEVHSPERCLLYSMKLWGDNLEALRIASGTI----YNEIIVWKVDWEHVAPLLN 220 (1088)
Q Consensus 156 ----Dg~V~iWd~~~------~~-~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~----dg~I~vwd~~~~~~~~~~~ 220 (1088)
+..|.+||+.+ +. ....+..+.....+. + ++++..|+..+. .+.|.+||+.
T Consensus 254 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~--~---s~dg~~l~~~s~~~~~~~~l~~~d~~--------- 319 (710)
T 2xdw_A 254 GCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDY--V---TNEGTVFTFKTNRHSPNYRLINIDFT--------- 319 (710)
T ss_dssp SSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE--E---EEETTEEEEEECTTCTTCEEEEEETT---------
T ss_pred cCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEE--E---eccCCEEEEEECCCCCCCEEEEEeCC---------
Confidence 67899999986 43 344444444333222 1 356666665544 3368888887
Q ss_pred CCCCccCCCCCCCCceeEeccccccee--eeEEEeCCCC--CEEEEEEcCCCCEEEEEECCCcE--EEEEcCCCcccCCC
Q 001391 221 SPEGNHAHGSSSDFKCFKLQDQQHTAV--NLFRLVGHEG--SIFRIEWSSCGSKLVSVSDDRSA--RIWEVRAEYWKDSD 294 (1088)
Q Consensus 221 ~~~~~s~~~~~~~~~~~~~~~~~~~~~--~~~~~~gh~~--~V~~v~~sp~g~~l~s~s~Dg~v--~iWd~~~~~~~~~~ 294 (1088)
... ....+..|.. .+..++|++++.++++...|+.. ++|++.+++
T Consensus 320 ------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~----- 370 (710)
T 2xdw_A 320 ------------------------DPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA----- 370 (710)
T ss_dssp ------------------------SCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC-----
T ss_pred ------------------------CCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC-----
Confidence 221 2344445544 68889999888888889888854 555664432
Q ss_pred CceeeeceeeeccCcceEEEEEC--CCEEE-EEe---CCCcEEEEcC-CCc
Q 001391 295 SIEEVGSSVLYGHNARVWDCCLT--DSFII-TAG---EDCTCRVWGS-DGK 338 (1088)
Q Consensus 295 ~~~~i~~~~~~~h~~~I~~v~~~--~~~l~-sg~---~Dg~i~vWd~-~~~ 338 (1088)
.+. .+..+...+..+.++ +..++ +.+ ..+++..||+ +++
T Consensus 371 ---~~~--~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 371 ---LLK--IFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ---EEE--EECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ---EEE--ecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 222 444556778888886 33443 333 3478999998 444
No 191
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.11 E-value=1.1e-08 Score=111.14 Aligned_cols=209 Identities=8% Similarity=0.041 Sum_probs=149.0
Q ss_pred eEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCC-CcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC
Q 001391 89 FEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS-HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (1088)
Q Consensus 89 ~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~ 166 (1088)
.+|++ ++++.|.+||.++ .+.+.++..+. ..+.+++++| +|++++ +.++.|..||. +
T Consensus 6 ~~lv~~~~~~~v~~~d~~t---------------G~~~w~~~~~~~~~~~~~~~~p---dG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDT---------------KEIVWEYPLEKGWECNSVAATK---AGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEEECTTCSEEEEEETTT---------------TEEEEEEECCTTCCCCEEEECT---TSCEEE--ECBSEEEEECT-T
T ss_pred cEEEeeCCCCEEEEEECCC---------------CeEEEEeCCCccCCCcCeEECC---CCCEEE--eCCCCEEEECC-C
Confidence 44444 5589999999864 45566666665 5789999999 999888 35788999999 8
Q ss_pred CceEEEeccCCceeEEEEeeecCCCCCcEEEEEec-CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccc
Q 001391 167 SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI-YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (1088)
Q Consensus 167 ~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~-dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 245 (1088)
++.+.++..+....+.++.. .+++..+++.+. ++.|..+|..
T Consensus 65 G~~~W~~~~~~~~~~~~~~~---~~dG~~lv~~~~~~~~v~~vd~~---------------------------------- 107 (276)
T 3no2_A 65 GRELWNIAAPAGCEMQTARI---LPDGNALVAWCGHPSTILEVNMK---------------------------------- 107 (276)
T ss_dssp SCEEEEEECCTTCEEEEEEE---CTTSCEEEEEESTTEEEEEECTT----------------------------------
T ss_pred CCEEEEEcCCCCccccccEE---CCCCCEEEEecCCCCEEEEEeCC----------------------------------
Confidence 99988887654444555554 578999988876 6777766653
Q ss_pred eeeeEEEe------CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--
Q 001391 246 AVNLFRLV------GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-- 317 (1088)
Q Consensus 246 ~~~~~~~~------gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-- 317 (1088)
++.+..+. ++......+++.++|+++++.+.++.|..||.. ++. +. .+..+ ..+.++.+.
T Consensus 108 Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~--------~w--~~~~~-~~~~~~~~~~~ 175 (276)
T 3no2_A 108 GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL--------LN--SVKLS-GTPFSSAFLDN 175 (276)
T ss_dssp SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE--------EE--EEECS-SCCCEEEECTT
T ss_pred CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE--------EE--EEECC-CCccceeEcCC
Confidence 22222222 222345567889999999999999999999987 532 21 22222 234445555
Q ss_pred CCEEEEEeCCCcEEEEcCC-CceeEEEcccCC-----CCeEEEEEcCCCCEEEEEe
Q 001391 318 DSFIITAGEDCTCRVWGSD-GKQLKMIKEHIG-----RGIWRCLYDSLSSLLVTAG 367 (1088)
Q Consensus 318 ~~~l~sg~~Dg~i~vWd~~-~~~~~~~~~h~~-----~~V~~l~~~~dg~~l~tg~ 367 (1088)
+++++++..++.|..+|.. |+.+.++..+.. .-+..+...++|+++++..
T Consensus 176 g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 176 GDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp SCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 6788888888899999994 999998865421 1277888899999888873
No 192
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.10 E-value=9.9e-09 Score=110.87 Aligned_cols=236 Identities=7% Similarity=-0.068 Sum_probs=155.4
Q ss_pred ceEEEEecccccccCCCccceeeEEE-E-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEeccc
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVA-L-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la-~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~ 144 (1088)
...+++++ +++ .+.+ + ..++.|.+|+..... .......+...+.++++.+
T Consensus 25 ~p~~i~~~-------~~g----~l~v~~~~~~~~i~~~~~~~~~---------------~~~~~~~~~~~p~~i~~~~-- 76 (270)
T 1rwi_B 25 SPSGVAVD-------SAG----NVYVTSEGMYGRVVKLATGSTG---------------TTVLPFNGLYQPQGLAVDG-- 76 (270)
T ss_dssp CEEEEEEC-------TTC----CEEEEECSSSCEEEEECC--------------------EECCCCSCCSCCCEEECT--
T ss_pred CccceEEC-------CCC----CEEEEccCCCCcEEEecCCCcc---------------cceEeeCCcCCcceeEECC--
Confidence 57888888 776 4554 4 457889999865321 1111122335678899999
Q ss_pred CCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCC
Q 001391 145 NGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEG 224 (1088)
Q Consensus 145 ~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~ 224 (1088)
++.++++.. ++.|.+||....... .+..........+++ ++++.++++...++.|.+|+..
T Consensus 77 -~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~---~~~g~l~v~~~~~~~i~~~~~~------------- 137 (270)
T 1rwi_B 77 -AGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAV---DTQGAVYVADRGNNRVVKLAAG------------- 137 (270)
T ss_dssp -TCCEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEE---CTTCCEEEEEGGGTEEEEECTT-------------
T ss_pred -CCCEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEE---CCCCCEEEEECCCCEEEEEECC-------------
Confidence 888665555 889999998765433 222222223455555 4677777777778899999754
Q ss_pred ccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceee
Q 001391 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (1088)
Q Consensus 225 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~ 304 (1088)
..........+...+.+++++|+|+.+++...++.|.+|+...... .. ..
T Consensus 138 --------------------~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~--------~~--~~ 187 (270)
T 1rwi_B 138 --------------------SKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ--------VV--LP 187 (270)
T ss_dssp --------------------CCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE--------EE--CC
T ss_pred --------------------CceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce--------Ee--ec
Confidence 1111111122334678899999999888877788999999876422 11 12
Q ss_pred eccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 305 YGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 305 ~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
..+...+.++++. +.++++...++.|.+|+..+.............+.+++++++|+++++...++.|+++++..
T Consensus 188 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 188 FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence 2233567889997 45666666788999999966554443322212589999999999888988999999999853
No 193
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.09 E-value=2.8e-08 Score=123.75 Aligned_cols=243 Identities=9% Similarity=0.018 Sum_probs=157.6
Q ss_pred ceEEEEecccccccCCCccceeeEEEEE-C-CC----EEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEE
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALF-G-EK----RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCF 140 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~-g-d~----~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f 140 (1088)
.+.+++|| ||| .+|+.. . ++ .|++||+..+. .......+ ..+.+++|
T Consensus 126 ~~~~~~~S-------PDg----~~la~~~~~~G~~~~~i~v~d~~tg~---------------~~~~~~~~-~~~~~~~w 178 (710)
T 2xdw_A 126 ALRGYAFS-------EDG----EYFAYGLSASGSDWVTIKFMKVDGAK---------------ELPDVLER-VKFSCMAW 178 (710)
T ss_dssp EEEEEEEC-------TTS----SEEEEEEEETTCSCEEEEEEETTTTE---------------EEEEEEEE-ECSCCEEE
T ss_pred EEEEEEEC-------CCC----CEEEEEEcCCCCceEEEEEEECCCCC---------------CCcccccC-cccceEEE
Confidence 57889999 888 444443 2 22 89999998543 12111111 22678999
Q ss_pred ecccCCCCEEEEEEcCCc----------------EEEEEcCCCce--EEEeccCC-ceeEEEEeeecCCCCCcEEEEEec
Q 001391 141 LKVCNGNRSLAIGCSDNS----------------IRVWDISNSSI--ILEVHSPE-RCLLYSMKLWGDNLEALRIASGTI 201 (1088)
Q Consensus 141 ~p~~~d~~~lasgs~Dg~----------------V~iWd~~~~~~--~~~~~~~~-~~~~~s~~~~~~s~~~~~l~sg~~ 201 (1088)
+| ||+.|+.++.++. |++|++.+++. ......+. .....++.+ ++|+.+|+....
T Consensus 179 sp---Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~---SpDg~~l~~~~~ 252 (710)
T 2xdw_A 179 TH---DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL---SDDGRYVLLSIR 252 (710)
T ss_dssp CT---TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE---CTTSCEEEEEEE
T ss_pred Ee---CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE---cCCCCEEEEEEE
Confidence 99 9999999888766 99999988763 22223221 222344554 788988887654
Q ss_pred -----CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccccee-eeEEEeCCCCCEEEEEEcCCCCEEEEEE
Q 001391 202 -----YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV-NLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (1088)
Q Consensus 202 -----dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~gh~~~V~~v~~sp~g~~l~s~s 275 (1088)
+..|.+||+.+... + ..+. ....+..+...+.. .|+|+|+.|+..+
T Consensus 253 ~~~~~~~~l~~~d~~~~~~-~--------------------------~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s 304 (710)
T 2xdw_A 253 EGCDPVNRLWYCDLQQESN-G--------------------------ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKT 304 (710)
T ss_dssp CSSSSCCEEEEEEGGGSSS-S--------------------------SCSSCCCEEEECSSSSCEE-EEEEETTEEEEEE
T ss_pred ccCCCccEEEEEECccccc-c--------------------------cCCccceEEeeCCCCcEEE-EEeccCCEEEEEE
Confidence 56899999871000 0 0011 34556667666655 4889998887766
Q ss_pred CC----CcEEEEEcCCCcccCCCCceeeeceeeeccCc--ceEEEEEC-C-CEEEEEeCCCc--EEEEcC-CCceeEEEc
Q 001391 276 DD----RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA--RVWDCCLT-D-SFIITAGEDCT--CRVWGS-DGKQLKMIK 344 (1088)
Q Consensus 276 ~D----g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~--~I~~v~~~-~-~~l~sg~~Dg~--i~vWd~-~~~~~~~~~ 344 (1088)
.+ ..|.+||+.++.. .... .+..|.. .+..+.|. + .++++...|+. |.+|++ +|+.+..+.
T Consensus 305 ~~~~~~~~l~~~d~~~~~~------~~~~--~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~ 376 (710)
T 2xdw_A 305 NRHSPNYRLINIDFTDPEE------SKWK--VLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFP 376 (710)
T ss_dssp CTTCTTCEEEEEETTSCCG------GGCE--EEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEEC
T ss_pred CCCCCCCEEEEEeCCCCCc------ccce--eccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecC
Confidence 53 3599999877531 1112 4444443 67778887 4 56777888885 566777 788788888
Q ss_pred ccCCCCeEEEEEcCCCCEEEEE-e---CCCCEEEEEcCC
Q 001391 345 EHIGRGIWRCLYDSLSSLLVTA-G---FDSAIKVHQFQA 379 (1088)
Q Consensus 345 ~h~~~~V~~l~~~~dg~~l~tg-~---~Dg~I~iwd~~~ 379 (1088)
.+.+ .|..+.++|++..++.. + ..++|..||+.+
T Consensus 377 ~~~~-~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 377 LEVG-SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp CCSS-EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred CCCc-eEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 7766 68899999998765533 2 347899999854
No 194
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.09 E-value=1.7e-08 Score=110.89 Aligned_cols=235 Identities=11% Similarity=0.008 Sum_probs=151.8
Q ss_pred eeeccCCCCcEEEEEEecccCCCC-EEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCC
Q 001391 125 VQSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN 203 (1088)
Q Consensus 125 ~~~l~~h~~~I~~v~f~p~~~d~~-~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg 203 (1088)
+..+..+.....+++|+| +++ +++++..++.|..||..++ ...+..+. .....+++ ++++.++++...++
T Consensus 20 ~~~l~~~~~~~eg~~~d~---~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~-~~~~~l~~---~~dg~l~v~~~~~~ 90 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVP---ARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPS-HHQNGHCL---NKQGHLIACSHGLR 90 (296)
T ss_dssp CEEEECCCSSEEEEEEEG---GGTEEEEEEGGGTEEEEEETTSC--EEEEESSC-SSEEEEEE---CTTCCEEEEETTTT
T ss_pred EEEEecCCccccCCeEeC---CCCEEEEEeCCCCEEEEEECCCC--eEEEECCC-CCcceeeE---CCCCcEEEEecCCC
Confidence 344445667789999999 988 7888888999999999887 44443332 23445555 57888887777778
Q ss_pred eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe---C-CCCCEEEEEEcCCCCEEEEEEC---
Q 001391 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV---G-HEGSIFRIEWSSCGSKLVSVSD--- 276 (1088)
Q Consensus 204 ~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~---g-h~~~V~~v~~sp~g~~l~s~s~--- 276 (1088)
.|.+||.. +++...... + ....+..++++|+|+++++.+.
T Consensus 91 ~i~~~d~~---------------------------------~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~ 137 (296)
T 3e5z_A 91 RLERQREP---------------------------------GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGI 137 (296)
T ss_dssp EEEEECST---------------------------------TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHH
T ss_pred eEEEEcCC---------------------------------CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccc
Confidence 99999986 222111111 1 1234678999999998887431
Q ss_pred --------------CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC--CCc
Q 001391 277 --------------DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS--DGK 338 (1088)
Q Consensus 277 --------------Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~--~~~ 338 (1088)
.+.|..++.. ++ +. ....+......++|+ +..+++.+.++.|.+|++ +++
T Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~~-g~---------~~--~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~ 205 (296)
T 3e5z_A 138 DKPEEGYGGEMELPGRWVFRLAPD-GT---------LS--APIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGE 205 (296)
T ss_dssp HCGGGSSCCCCCSSSCEEEEECTT-SC---------EE--EEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSC
T ss_pred ccccccccccccCCCcEEEEECCC-CC---------EE--EeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCc
Confidence 2344444433 21 11 334555667889998 566777778899999998 344
Q ss_pred e---eEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeec
Q 001391 339 Q---LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLT 415 (1088)
Q Consensus 339 ~---~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (1088)
. ...+..+.+ .+..++++++|++.++. ++.|.+|+.+++.+.. +
T Consensus 206 ~~~~~~~~~~~~~-~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~~~~~------------------------------~ 252 (296)
T 3e5z_A 206 TEYQGVHFTVEPG-KTDGLRVDAGGLIWASA--GDGVHVLTPDGDELGR------------------------------V 252 (296)
T ss_dssp EEEEEEEECCSSS-CCCSEEEBTTSCEEEEE--TTEEEEECTTSCEEEE------------------------------E
T ss_pred CcCCCeEeeCCCC-CCCeEEECCCCCEEEEc--CCeEEEECCCCCEEEE------------------------------E
Confidence 4 233433333 46789999999876666 7889999986432211 1
Q ss_pred cCCCCceEEEEe-ccCCeEEEEecCCeEEEEEe
Q 001391 416 DSKSEYVRCLHL-TSEDTLYIATNHGYLYHTKL 447 (1088)
Q Consensus 416 ~~~~~~V~~l~~-s~~~~ll~~t~~g~i~~~~~ 447 (1088)
..+.. +.+++| .+++..+..++.+.++.++.
T Consensus 253 ~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~ 284 (296)
T 3e5z_A 253 LTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIET 284 (296)
T ss_dssp ECSSC-CCEEEEESTTSCEEEEEETTEEEEEEC
T ss_pred ECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEc
Confidence 11223 778888 46765444444566776554
No 195
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.08 E-value=3e-07 Score=100.55 Aligned_cols=273 Identities=10% Similarity=-0.041 Sum_probs=176.6
Q ss_pred cceEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEeccc
Q 001391 66 IRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (1088)
Q Consensus 66 ~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~ 144 (1088)
..++++++. ++| .+.++. +++.|.+|+.. .. ... ..+..+...+.++++.+
T Consensus 20 ~~p~~i~~d-------~~g----~l~v~~~~~~~v~~~~~~-~~-------------~~~-~~~~~~~~~~~~i~~~~-- 71 (300)
T 2qc5_A 20 SGPYGITSS-------EDG----KVWFTQHKANKISSLDQS-GR-------------IKE-FEVPTPDAKVMCLIVSS-- 71 (300)
T ss_dssp CCEEEEEEC-------TTS----CEEEEETTTTEEEEECTT-SC-------------EEE-EECSSTTCCEEEEEECT--
T ss_pred CCcceeeEC-------CCC----CEEEEcCCCCeEEEECCC-Cc-------------eEE-EECCCCCCcceeEEECC--
Confidence 368899998 777 455554 57999999876 22 121 12233446799999998
Q ss_pred CCCCEEEEEEcCCcEEEEEcCCCceEEEeccC-CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCC
Q 001391 145 NGNRSLAIGCSDNSIRVWDISNSSIILEVHSP-ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPE 223 (1088)
Q Consensus 145 ~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~-~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~ 223 (1088)
++.+.++...++.|..||.. ++.. .+..+ .......+++ .+++.+.++...++.|..++..
T Consensus 72 -~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~---~~~g~l~v~~~~~~~i~~~~~~------------ 133 (300)
T 2qc5_A 72 -LGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITE---GLNGDIWFTQLNGDRIGKLTAD------------ 133 (300)
T ss_dssp -TSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEE---CSTTCEEEEETTTTEEEEECTT------------
T ss_pred -CCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceE---CCCCCEEEEccCCCeEEEECCC------------
Confidence 88877766667889999987 5543 22221 2234555555 4677777777667888888865
Q ss_pred CccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeecee
Q 001391 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSV 303 (1088)
Q Consensus 224 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~ 303 (1088)
.......+......+.++++.++++..++...++.|..++. +++. .. +.
T Consensus 134 ---------------------g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~------~~---~~ 182 (300)
T 2qc5_A 134 ---------------------GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKL------EE---YP 182 (300)
T ss_dssp ---------------------SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE------EE---EE
T ss_pred ---------------------CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcE------EE---ee
Confidence 11111122334567899999999997777777788999988 4321 11 12
Q ss_pred eeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEE-EcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCC
Q 001391 304 LYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (1088)
Q Consensus 304 ~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~-~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~ 380 (1088)
...+...+..+++. +.+.++....+.|.+|+.+++.... +..+.. .+.+++++++|++.++...++.|..++..+.
T Consensus 183 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~-~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~ 261 (300)
T 2qc5_A 183 LPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNA-RPHAITAGKNSEIWFTEWGANQIGRITNDNT 261 (300)
T ss_dssp CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTC-CEEEEEECSTTCEEEEETTTTEEEEECTTSC
T ss_pred CCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCC-CceEEEECCCCCEEEeccCCCeEEEECCCCc
Confidence 33344568888887 4555555566789999996655443 222333 5889999999987777666788999987431
Q ss_pred CCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEE
Q 001391 381 LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTK 446 (1088)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~ 446 (1088)
+.....+ .....+.++++.++|.+++++.. .+..++
T Consensus 262 -------------------~~~~~~~----------~~~~~~~~i~~~~~g~l~v~~~~-~i~~~~ 297 (300)
T 2qc5_A 262 -------------------IQEYQLQ----------TENAEPHGITFGKDGSVWFALKC-KIGKLN 297 (300)
T ss_dssp -------------------EEEEECC----------STTCCCCCEEECTTSCEEEECSS-EEEEEE
T ss_pred -------------------EEEEECC----------ccCCccceeEeCCCCCEEEEccC-ceEEeC
Confidence 1111111 11234678889999999888874 666443
No 196
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.08 E-value=3.3e-05 Score=97.30 Aligned_cols=464 Identities=9% Similarity=0.014 Sum_probs=254.6
Q ss_pred CCceEEecCCCcee---e-------eeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcc-eEEEE
Q 001391 4 KDLSEWRLDVGQYL---G-------EISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIR-LHGIS 72 (1088)
Q Consensus 4 ~~i~iWdl~~g~~~---~-------~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~-V~~i~ 72 (1088)
+.+..||..+++.. . .|.++... ++ +.+.+ |+.+-|..||..+++............ |..+.
T Consensus 107 ~Gl~~yd~~~~~f~~~~~~~~~~~~~i~~i~~d--~~----g~lwi-~t~~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~ 179 (795)
T 4a2l_A 107 DGLSRYDEEKDIFQNFFYEKNGKHLQVNGIEEI--SP----EQLLI-STPEGLIMFDIKESKFIDDSFSTAMHKTIASTL 179 (795)
T ss_dssp SCEEEEETTTTEEEEECCEETTEECCCCEEEEE--ET----TEEEE-EETTEEEEEETTTTEEECSSSCHHHHTCCEEEE
T ss_pred CchheeCCCCCeEEeccccccCCCceEEEEEEC--CC----CCEEE-EECCceEEEECCCCEEEeccCCCCCCcceEEEE
Confidence 34778887766511 1 17888887 66 55554 444569999988765432111111123 77777
Q ss_pred ecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEE
Q 001391 73 CNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (1088)
Q Consensus 73 ~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~las 152 (1088)
.. +++ .+.+...++.+..|+..... .+.... ..+...|.++...+ ++.+. .
T Consensus 180 ~d-------~~g----~lwigt~~~Gl~~~~~~~~~-------------~~~~~~-~~~~~~i~~i~~d~---~g~lw-i 230 (795)
T 4a2l_A 180 YR-------QGD----QIYIGTSTDGLYTYSITQKT-------------FEKVIP-ILGTKQIQAILQQS---PTRIW-V 230 (795)
T ss_dssp EE-------ETT----EEEEEESSSCEEEEETTTCC-------------EEECC-----CCCEEEEEEEE---TTEEE-E
T ss_pred EC-------CCC----CEEEEECCCCEEEEeCCCCe-------------EEEecC-CCCCCeeEEEEEcC---CCCEE-E
Confidence 76 555 56565555568888865422 111110 12346789988877 76644 4
Q ss_pred EEcCCcEEEEEcCCCceEEEeccC------CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCcc
Q 001391 153 GCSDNSIRVWDISNSSIILEVHSP------ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (1088)
Q Consensus 153 gs~Dg~V~iWd~~~~~~~~~~~~~------~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s 226 (1088)
|+.++-+.+||..+++...-...+ ....++++.. +.++.+.+ |+.. .|.+|+..+
T Consensus 231 gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~---d~~g~lWi-gt~~-Gl~~~~~~~-------------- 291 (795)
T 4a2l_A 231 ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAM---DSQNRLWI-GTFN-DLNIYHEGT-------------- 291 (795)
T ss_dssp EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEE---CTTSCEEE-EESS-CEEEEETTT--------------
T ss_pred EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEE---cCCCCEEE-EeCC-hhheEcCCC--------------
Confidence 555545889998776544322211 1233555543 34554443 4444 588888761
Q ss_pred CCCCCCCCceeEecccccceeeeEEEe--------CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCcee
Q 001391 227 AHGSSSDFKCFKLQDQQHTAVNLFRLV--------GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEE 298 (1088)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~ 298 (1088)
.. +..+. -....|.++...++|... .|+.++-|..|+...... +.
T Consensus 292 -------------------~~-~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~------~~ 344 (795)
T 4a2l_A 292 -------------------DS-FASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNRF------KN 344 (795)
T ss_dssp -------------------TE-EEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESSSCEEEECGGGGSS------EE
T ss_pred -------------------Ce-EEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECCCCeEEeCCCcccc------eE
Confidence 11 11111 123579999999988754 455666688888765432 11
Q ss_pred eecee--eeccCcceEEEEEC-CCEEEEEeCCCcEEEEcCCCceeEEEcc--------cCCCCeEEEEEcCCCCEEEEEe
Q 001391 299 VGSSV--LYGHNARVWDCCLT-DSFIITAGEDCTCRVWGSDGKQLKMIKE--------HIGRGIWRCLYDSLSSLLVTAG 367 (1088)
Q Consensus 299 i~~~~--~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~~~~~~~~~~~--------h~~~~V~~l~~~~dg~~l~tg~ 367 (1088)
+.... ..-....|.++... ...|-.|..++-+..|+........+.. -....|.+++..+++++|..|+
T Consensus 345 ~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt 424 (795)
T 4a2l_A 345 IRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGT 424 (795)
T ss_dssp ECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEE
T ss_pred EcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEe
Confidence 11000 00123468888887 4567778888889999985444444321 1123699999999988566677
Q ss_pred CCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEe
Q 001391 368 FDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKL 447 (1088)
Q Consensus 368 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~ 447 (1088)
.++-+..++..+.....+.. ... ......|.++...+++.+.+++.. .++.++
T Consensus 425 ~~~Gl~~~d~~~~~~~~~~~------------------~~~-------~l~~~~v~~i~~d~~g~lwigt~~-Gl~~~~- 477 (795)
T 4a2l_A 425 HAGGLSILHRNSGQVENFNQ------------------RNS-------QLVNENVYAILPDGEGNLWLGTLS-ALVRFN- 477 (795)
T ss_dssp TTTEEEEEETTTCCEEEECT------------------TTS-------CCSCSCEEEEEECSSSCEEEEESS-CEEEEE-
T ss_pred CcCceeEEeCCCCcEEEeec------------------CCC-------CcCCCeeEEEEECCCCCEEEEecC-ceeEEe-
Confidence 77779999885432211110 000 011246889999889999999984 466443
Q ss_pred ccCCcceeEEeeee-----cCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccc
Q 001391 448 CDMDSVNWNKILQV-----SEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIER 522 (1088)
Q Consensus 448 ~~~~~~~~~~~~~~-----~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~ 522 (1088)
..+..+...... -....+.++..... ..+-+|+. +.+..|+..++.. ..............
T Consensus 478 --~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~---------g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~ 543 (795)
T 4a2l_A 478 --PEQRSFTTIEKEKDGTPVVSKQITTLFRDSH---------KRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKL 543 (795)
T ss_dssp --TTTTEEEECCBCTTCCBCCCCCEEEEEECTT---------CCEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGS
T ss_pred --CCCCeEEEccccccccccCCceEEEEEECCC---------CCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCC
Confidence 334444333221 11234555544332 33444444 5688888765432 10000000001111
Q ss_pred eeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeecc--c-cCceEEEEEeeeCCCEEEEEc
Q 001391 523 QLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSS--C-FGARIMCLDASFEDEVLFCGD 599 (1088)
Q Consensus 523 ~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~--~-h~~~It~l~~spdg~~LatGs 599 (1088)
.+.. .+...+|++.++... -+..||..... + . .+.. + ....|.++...++|++.+.+
T Consensus 544 ~i~~--i~~d~~g~lWigT~~--Gl~~~d~~~~~----~--------~---~~~~~~gl~~~~i~~i~~d~~g~lWi~t- 603 (795)
T 4a2l_A 544 FTNC--IYEASNGIIWVGTRE--GFYCFNEKDKQ----I--------K---RYNTTNGLPNNVVYGILEDSFGRLWLST- 603 (795)
T ss_dssp CEEE--EEECTTSCEEEEESS--CEEEEETTTTE----E--------E---EECGGGTCSCSCEEEEEECTTSCEEEEE-
T ss_pred eeEE--EEECCCCCEEEEeCC--CceeECCCCCc----E--------E---EeCCCCCCchhheEEEEECCCCCEEEEc-
Confidence 1222 235567887765543 47778865331 1 1 1111 1 13458888888888877666
Q ss_pred CCCcEEEEeCCc
Q 001391 600 LRGNLVLFPLLR 611 (1088)
Q Consensus 600 ~dg~I~Iw~~~~ 611 (1088)
++-|..|+..+
T Consensus 604 -~~Gl~~~~~~~ 614 (795)
T 4a2l_A 604 -NRGISCFNPET 614 (795)
T ss_dssp -TTEEEEEETTT
T ss_pred -CCceEEEcCCC
Confidence 34577777654
No 197
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.02 E-value=4.6e-07 Score=102.80 Aligned_cols=270 Identities=7% Similarity=-0.121 Sum_probs=165.5
Q ss_pred CCEEEEEe--C-C---eEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE----------CCCE
Q 001391 35 LPFLLAGS--G-S---QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF----------GEKR 98 (1088)
Q Consensus 35 ~~~laag~--d-~---~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~----------gd~~ 98 (1088)
++++.+.. + . +|.+||..+++.+.++..... - +++++ |||+ .+.++. .++.
T Consensus 32 ~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~--p-~i~~s-------pDg~---~lyv~n~~~~~~~rg~~~~~ 98 (373)
T 2mad_H 32 GRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL--P-NPVAA-------HSGS---EFALASTSFSRIAKGKRTDY 98 (373)
T ss_pred CCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCC--C-CeEEC-------CCCC---EEEEEeccccccccCCCCCe
Confidence 55555543 2 2 899999999999888775332 3 99999 8883 344442 2578
Q ss_pred EEEEEeccCCCCCCCCCCccccccceeeeccC-------CCCcEEEEEEecccCCCCEEEEEEc--CCcEEEEEcCCCce
Q 001391 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPR-------LSHWVFDVCFLKVCNGNRSLAIGCS--DNSIRVWDISNSSI 169 (1088)
Q Consensus 99 v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~-------h~~~I~~v~f~p~~~d~~~lasgs~--Dg~V~iWd~~~~~~ 169 (1088)
|.+||..+. +.+..+.- +...-..++|+| ||++|+++.. ++.|.++| .+++.
T Consensus 99 v~viD~~t~---------------~~~~~i~~~~~~~~~~g~~p~~~~~sp---DG~~l~v~n~~~~~~v~viD-~t~~~ 159 (373)
T 2mad_H 99 VEVFDPVTF---------------LPIADIELPDAPRFDVGPYSWMNANTP---NNADLLFFQFAAGPAVGLVV-QGGSS 159 (373)
T ss_pred EEEEECCCC---------------cEEEEEECCCccccccCCCccceEECC---CCCEEEEEecCCCCeEEEEE-CCCCE
Confidence 999998742 22222211 012345899999 9999998864 58899999 99998
Q ss_pred EEE-eccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee
Q 001391 170 ILE-VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1088)
Q Consensus 170 ~~~-~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 248 (1088)
+.+ +..+.. . .+. ......+++.+.||.+.++|. +.+..... ....
T Consensus 160 ~~~~i~~~~~-~----~~~--~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~-------------------------~~~~ 206 (373)
T 2mad_H 160 DDQLLSSPTC-Y----HIH--PGAPSTFYLLCAQGGLAKTDH-AGGAAGAG-------------------------LVGA 206 (373)
T ss_pred EeEEcCCCce-E----EEE--eCCCceEEEEcCCCCEEEEEC-CCcEEEEE-------------------------eccc
Confidence 888 654432 1 111 122345566778999999987 33221100 0000
Q ss_pred eEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeec--------cCcceEEEEEC--C
Q 001391 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG--------HNARVWDCCLT--D 318 (1088)
Q Consensus 249 ~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~--------h~~~I~~v~~~--~ 318 (1088)
. +.+.........+.+++..++..+..+.+.+.|+..... ..+..+.+.. .......+.++ +
T Consensus 207 ~--~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~------~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~ 278 (373)
T 2mad_H 207 M--LTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA------TNKAPIDALSGGRKADTWRPGGWQQVAYLKSS 278 (373)
T ss_pred c--ccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc------eEeeeeeecCCcccccceecCceEeEEECCCC
Confidence 0 111111122345667666555555778899999875422 1111001100 11223345666 4
Q ss_pred CEEEEEeC----------CCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC-EEEEEe-CCCCEEEEEcCC
Q 001391 319 SFIITAGE----------DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAG-FDSAIKVHQFQA 379 (1088)
Q Consensus 319 ~~l~sg~~----------Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~-~l~tg~-~Dg~I~iwd~~~ 379 (1088)
..++.+.. ++.|.+.|. +++.+..+.... ..++++|+|||+ +++++. .++.|.++|..+
T Consensus 279 ~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~--~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t 350 (373)
T 2mad_H 279 DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH--DVDAISVAQDGGPDLYALSAGTEVLHIYDAGA 350 (373)
T ss_pred CEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC--CcCeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 55555432 357999999 677778875433 478999999999 788877 589999999954
No 198
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.02 E-value=8.1e-08 Score=107.72 Aligned_cols=272 Identities=10% Similarity=0.012 Sum_probs=172.3
Q ss_pred EEEeccCCCCCCCCEEEEEe------CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE--
Q 001391 23 LCFVHLPSHLSSLPFLLAGS------GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-- 94 (1088)
Q Consensus 23 v~fs~~pd~~~~~~~laag~------d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-- 94 (1088)
.... |+ ++.+.+.. ++.|.++|..+++.+.++..... . + ++++ |||+ .+.++.
T Consensus 38 ~~~~--pd----~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~s-------pDG~---~lyVan~~ 98 (386)
T 3sjl_D 38 EAPA--PD----ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVA-------DDGS---FIAHASTV 98 (386)
T ss_dssp CCCC--CC----TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C-E-EEEC-------TTSS---CEEEEEEE
T ss_pred eccC--CC----CCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C-c-EEEC-------CCCC---EEEEEccc
Confidence 4445 77 55555543 46999999999999999987444 3 5 9999 8884 444443
Q ss_pred --------CCCEEEEEEeccCCCCCCCCCCccccccceeeeccC-------CCCcEEEEEEecccCCCCEEEEEEc--CC
Q 001391 95 --------GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR-------LSHWVFDVCFLKVCNGNRSLAIGCS--DN 157 (1088)
Q Consensus 95 --------gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~-------h~~~I~~v~f~p~~~d~~~lasgs~--Dg 157 (1088)
.++.|.+||..+. +.+..+.- ....-..++|+| ||++|+++.. ++
T Consensus 99 ~~r~~~G~~~~~VsviD~~t~---------------~v~~~I~v~~g~r~~~g~~P~~~a~sp---DGk~lyVan~~~~~ 160 (386)
T 3sjl_D 99 FSRIARGERTDYVEVFDPVTL---------------LPTADIELPDAPRFLVGTYPWMTSLTP---DGKTLLFYQFSPAP 160 (386)
T ss_dssp EEETTEEEEEEEEEEECTTTC---------------CEEEEEEETTCCCCCBSCCGGGEEECT---TSSEEEEEECSSSC
T ss_pred ccccccCCCCCEEEEEECCCC---------------eEEEEEECCCccccccCCCCceEEEcC---CCCEEEEEEcCCCC
Confidence 2578999998853 33333321 112456799999 9999888763 68
Q ss_pred cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCcee
Q 001391 158 SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCF 237 (1088)
Q Consensus 158 ~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 237 (1088)
.|.++|+.+++.+.++..+....++. .....+++.+.||.+.+.++.+.
T Consensus 161 ~VsVID~~t~~vv~tI~v~g~~~~~P-------~g~~~~~~~~~DG~~~~v~~~~~------------------------ 209 (386)
T 3sjl_D 161 AVGVVDLEGKAFKRMLDVPDCYHIFP-------TAPDTFFMHCRDGSLAKVAFGTE------------------------ 209 (386)
T ss_dssp EEEEEETTTTEEEEEEECCSEEEEEE-------EETTEEEEEETTSCEEEEECCSS------------------------
T ss_pred eEEEEECCCCcEEEEEECCCcceeec-------CCCceeEEECCCCCEEEEECCCC------------------------
Confidence 99999999999999886554222221 23456678888999999998721
Q ss_pred EecccccceeeeEEEeCC----CCCEE-EEEEc-CCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeee------
Q 001391 238 KLQDQQHTAVNLFRLVGH----EGSIF-RIEWS-SCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY------ 305 (1088)
Q Consensus 238 ~~~~~~~~~~~~~~~~gh----~~~V~-~v~~s-p~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~------ 305 (1088)
++.......+ ...++ ...|. ++|+++. .+.++.|.+.|+.+... +.+.+..+.
T Consensus 210 --------g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~------~v~~~~~~~~~~~~~ 274 (386)
T 3sjl_D 210 --------GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDA------KFLPAVEALTEAERA 274 (386)
T ss_dssp --------SCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSC------EECCCEESSCHHHHH
T ss_pred --------CeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcc------eeecceecccccccc
Confidence 1111100001 12222 13554 5665444 66689999999976532 222211100
Q ss_pred -c-cCcceEEEEEC--CCEEEEEeC----------CCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC-EEEEE-eC
Q 001391 306 -G-HNARVWDCCLT--DSFIITAGE----------DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTA-GF 368 (1088)
Q Consensus 306 -~-h~~~I~~v~~~--~~~l~sg~~----------Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~-~l~tg-~~ 368 (1088)
+ .......++++ ++.++.... ...|.+.|+ +++.+..+..-. .+++|++++|++ +|++. ..
T Consensus 275 ~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~ 352 (386)
T 3sjl_D 275 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTG 352 (386)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEETT
T ss_pred ccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEcCC
Confidence 0 11122234555 455544432 246889999 788888876543 589999999996 66665 45
Q ss_pred CCCEEEEEcCC
Q 001391 369 DSAIKVHQFQA 379 (1088)
Q Consensus 369 Dg~I~iwd~~~ 379 (1088)
++.|.++|..+
T Consensus 353 ~~~VsViD~~t 363 (386)
T 3sjl_D 353 DKTLYIHDAES 363 (386)
T ss_dssp TTEEEEEETTT
T ss_pred CCeEEEEECCC
Confidence 89999999854
No 199
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.01 E-value=1.8e-08 Score=125.06 Aligned_cols=201 Identities=9% Similarity=-0.005 Sum_probs=130.9
Q ss_pred cCCCCcEEEEEEecccCCCCEEEE-----EEcCCcEEEEEcCCCceE-EEeccCCceeEEEEeeecCCCCCcEEEEEecC
Q 001391 129 PRLSHWVFDVCFLKVCNGNRSLAI-----GCSDNSIRVWDISNSSII-LEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (1088)
Q Consensus 129 ~~h~~~I~~v~f~p~~~d~~~las-----gs~Dg~V~iWd~~~~~~~-~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d 202 (1088)
.+|...+.+++|+| ||++||. |+.+.+|++||+.+++.+ ........ ..++.+ ++|+..|+.++.+
T Consensus 117 ~~~~~~~~~~~~SP---DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~--~~~~~w---spDg~~l~~~~~d 188 (695)
T 2bkl_A 117 KDGTVSLGTWAVSW---DGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGK--YATPKW---TPDSKGFYYEWLP 188 (695)
T ss_dssp SSSCEEEEEEEECT---TSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCT--TCCCEE---CTTSSEEEEEECC
T ss_pred cCCCEEEEEEEECC---CCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCccc--ccceEE---ecCCCEEEEEEec
Confidence 35666899999999 9999883 444578999999998764 21111111 022333 6889999988877
Q ss_pred Ce-------------EEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCC
Q 001391 203 NE-------------IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS 269 (1088)
Q Consensus 203 g~-------------I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~ 269 (1088)
.. |++|++.+... ....+.....|...+..+.|+|||+
T Consensus 189 ~~~~~~~~~~~~~~~v~~~~l~t~~~-----------------------------~~~lv~~~~~~~~~~~~~~~SpDG~ 239 (695)
T 2bkl_A 189 TDPSIKVDERPGYTTIRYHTLGTEPS-----------------------------KDTVVHERTGDPTTFLQSDLSRDGK 239 (695)
T ss_dssp CCTTSCGGGGGGGCEEEEEETTSCGG-----------------------------GCEEEECCCCCTTCEEEEEECTTSC
T ss_pred CCCCCccccCCCCCEEEEEECCCCch-----------------------------hceEEEecCCCCEEEEEEEECCCCC
Confidence 65 99999872110 1123333345667899999999999
Q ss_pred EEEEEECCC----cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEe---CCCcEEEEcC-CCce-
Q 001391 270 KLVSVSDDR----SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAG---EDCTCRVWGS-DGKQ- 339 (1088)
Q Consensus 270 ~l~s~s~Dg----~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~---~Dg~i~vWd~-~~~~- 339 (1088)
+|+.++.++ .|++|+..++.. . .+..+...+....+. +.++++.. .++.|.+|++ +++.
T Consensus 240 ~l~~~~~~~~~~~~l~~~~~~~~~~------~-----~l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~ 308 (695)
T 2bkl_A 240 YLFVYILRGWSENDVYWKRPGEKDF------R-----LLVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARA 308 (695)
T ss_dssp CEEEEEEETTTEEEEEEECTTCSSC------E-----EEEECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGG
T ss_pred EEEEEEeCCCCceEEEEEcCCCCce------E-----EeecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCcc
Confidence 998877665 566665543321 1 344444455555555 45444443 2588999999 4432
Q ss_pred -eEEEcccC-CCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 340 -LKMIKEHI-GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 340 -~~~~~~h~-~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
...+..+. ...+..++++ ++.++++...|+..++|.++
T Consensus 309 ~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 309 SWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp GCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred CCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 24443332 3358888888 67788999999999998763
No 200
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.98 E-value=5.1e-08 Score=105.17 Aligned_cols=234 Identities=6% Similarity=-0.049 Sum_probs=152.3
Q ss_pred eeEEEEEeccCCCCCCCCEEE-EEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECC
Q 001391 19 EISALCFVHLPSHLSSLPFLL-AGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~la-ag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd 96 (1088)
...+++++ |+ +++.+ +.. ++.|.+||..++... .+.......+.+++++ +++ .++++..+
T Consensus 25 ~p~~i~~~--~~----g~l~v~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~-------~~g----~l~v~~~~ 86 (270)
T 1rwi_B 25 SPSGVAVD--SA----GNVYVTSEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVD-------GAG----TVYVTDFN 86 (270)
T ss_dssp CEEEEEEC--TT----CCEEEEECSSSCEEEEECC-----E-ECCCCSCCSCCCEEEC-------TTC----CEEEEETT
T ss_pred CccceEEC--CC----CCEEEEccCCCCcEEEecCCCcccc-eEeeCCcCCcceeEEC-------CCC----CEEEEcCC
Confidence 56789999 88 77776 534 589999997665432 2222222357889998 776 55555558
Q ss_pred CEEEEEEeccCCCCCCCCCCccccccceeeecc-CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEecc
Q 001391 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLP-RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS 175 (1088)
Q Consensus 97 ~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~ 175 (1088)
+.|.+|+..... ...+. .....+.++++.| ++.++++...++.|.+|+..+.........
T Consensus 87 ~~i~~~d~~~~~----------------~~~~~~~~~~~p~~i~~~~---~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~ 147 (270)
T 1rwi_B 87 NRVVTLAAGSNN----------------QTVLPFDGLNYPEGLAVDT---QGAVYVADRGNNRVVKLAAGSKTQTVLPFT 147 (270)
T ss_dssp TEEEEECTTCSC----------------CEECCCCSCSSEEEEEECT---TCCEEEEEGGGTEEEEECTTCCSCEECCCC
T ss_pred CEEEEEeCCCce----------------EeeeecCCcCCCcceEECC---CCCEEEEECCCCEEEEEECCCceeEeeccc
Confidence 899999876322 11111 2235789999999 888777777788999997655543322111
Q ss_pred CCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCC
Q 001391 176 PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (1088)
Q Consensus 176 ~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 255 (1088)
. ......+++ ++++.++++...++.|.+|+.. ..........+
T Consensus 148 ~-~~~p~~i~~---~~~g~l~v~~~~~~~i~~~~~~---------------------------------~~~~~~~~~~~ 190 (270)
T 1rwi_B 148 G-LNDPDGVAV---DNSGNVYVTDTDNNRVVKLEAE---------------------------------SNNQVVLPFTD 190 (270)
T ss_dssp S-CCSCCCEEE---CTTCCEEEEEGGGTEEEEECTT---------------------------------TCCEEECCCSS
T ss_pred c-CCCceeEEE---eCCCCEEEEECCCCEEEEEecC---------------------------------CCceEeecccC
Confidence 1 111223443 4677777777778899999987 22211112233
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEE
Q 001391 256 EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVW 333 (1088)
Q Consensus 256 ~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vW 333 (1088)
...+.+++++++|..+++...++.|.+|+...... .. ....+...+.+++++ +.++++...++.|+++
T Consensus 191 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~------~~----~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~ 260 (270)
T 1rwi_B 191 ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS------TV----LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKL 260 (270)
T ss_dssp CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC------EE----CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc------ee----eccCCCCCceeEEECCCCCEEEEECCCCEEEEE
Confidence 36789999999998888887888999999876422 10 122333568899997 5778888889999999
Q ss_pred cCC
Q 001391 334 GSD 336 (1088)
Q Consensus 334 d~~ 336 (1088)
+..
T Consensus 261 ~~~ 263 (270)
T 1rwi_B 261 TSL 263 (270)
T ss_dssp CCC
T ss_pred cCC
Confidence 984
No 201
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.96 E-value=6.1e-05 Score=94.79 Aligned_cols=456 Identities=10% Similarity=-0.005 Sum_probs=244.4
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcc---eEEEEecccccccCCCccceeeEEEEE
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIR---LHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~---V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
..|.+|... ++ +.+-+ |+.+-|..||..+++.. .+....... |.++... ++| .+.+..
T Consensus 88 n~I~~i~~d--~~----g~lWi-gT~~Gl~~yd~~~~~f~-~~~~~~~~~~~~i~~i~~d-------~~g----~lwi~t 148 (795)
T 4a2l_A 88 DISRIVKTD--SQ----GRVWI-GTRDGLSRYDEEKDIFQ-NFFYEKNGKHLQVNGIEEI-------SPE----QLLIST 148 (795)
T ss_dssp SCEEEEEEC--TT----SCEEE-EESSCEEEEETTTTEEE-EECCEETTEECCCCEEEEE-------ETT----EEEEEE
T ss_pred cceeEEEEC--CC----CCEEE-EeCCchheeCCCCCeEE-eccccccCCCceEEEEEEC-------CCC----CEEEEE
Confidence 458888888 76 55554 44445899998877643 232211111 7777766 565 555555
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCC-CCc-EEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEE
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRL-SHW-VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h-~~~-I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~ 172 (1088)
. +.+..|+..... +... ..++ ... |.++...+ ++.+. .|+.++-|..|+..+++....
T Consensus 149 ~-~gl~~~~~~~~~-------------~~~~--~~~~~~~~~i~~i~~d~---~g~lw-igt~~~Gl~~~~~~~~~~~~~ 208 (795)
T 4a2l_A 149 P-EGLIMFDIKESK-------------FIDD--SFSTAMHKTIASTLYRQ---GDQIY-IGTSTDGLYTYSITQKTFEKV 208 (795)
T ss_dssp T-TEEEEEETTTTE-------------EECS--SSCHHHHTCCEEEEEEE---TTEEE-EEESSSCEEEEETTTCCEEEC
T ss_pred C-CceEEEECCCCE-------------EEec--cCCCCCCcceEEEEECC---CCCEE-EEECCCCEEEEeCCCCeEEEe
Confidence 4 668888865321 1111 0111 123 88888877 77644 466655688999877664332
Q ss_pred eccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE
Q 001391 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1088)
Q Consensus 173 ~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1088)
........+.++.. ..++. +..|+.++.|.+||..+ ... ..+
T Consensus 209 ~~~~~~~~i~~i~~---d~~g~-lwigt~~~Gl~~~~~~~---------------------------------~~~-~~~ 250 (795)
T 4a2l_A 209 IPILGTKQIQAILQ---QSPTR-IWVATEGAGLFLINPKT---------------------------------KEI-KNY 250 (795)
T ss_dssp C----CCCEEEEEE---EETTE-EEEEEBSSCEEEEETTT---------------------------------TEE-EEE
T ss_pred cCCCCCCeeEEEEE---cCCCC-EEEEECCCCeEEEeCCC---------------------------------CeE-EEe
Confidence 11111223444332 23444 44455555588888761 111 111
Q ss_pred e--------CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeece---eeeccCcceEEEEEC-CCE
Q 001391 253 V--------GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS---VLYGHNARVWDCCLT-DSF 320 (1088)
Q Consensus 253 ~--------gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~---~~~~h~~~I~~v~~~-~~~ 320 (1088)
. -....|.++...++|...+.. .+ -|.+||..+... ..+... ...-....|.++... ...
T Consensus 251 ~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~~-Gl~~~~~~~~~~------~~~~~~~~~~~~l~~~~i~~i~~D~~g~ 322 (795)
T 4a2l_A 251 LHSPSNPKSISSNYIRSLAMDSQNRLWIGT-FN-DLNIYHEGTDSF------ASYSSNPVENGSLSQRSVRSIFMDSQGG 322 (795)
T ss_dssp CCCTTCTTSCSCSBEEEEEECTTSCEEEEE-SS-CEEEEETTTTEE------EEECCCTTSTTSCSSSCEEEEEECTTSC
T ss_pred ecCCCCccccCCCeEEEEEEcCCCCEEEEe-CC-hhheEcCCCCeE------EEEecCCCCCCCCCCCcEEEEEEeCCcC
Confidence 1 023569999999888865544 44 488899776432 111100 001123568898887 556
Q ss_pred EEEEeCCCcEEEEcCCCceeEEEcc------cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCcccccc
Q 001391 321 IITAGEDCTCRVWGSDGKQLKMIKE------HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEF 394 (1088)
Q Consensus 321 l~sg~~Dg~i~vWd~~~~~~~~~~~------h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 394 (1088)
|-.|+.++-|..|+........+.. -....|.++...++|.+ -.|+.++-|..|+........+.
T Consensus 323 lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~~~~~~~-------- 393 (795)
T 4a2l_A 323 MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNL-WIGTNDGGLNLYNPITQRFTSYT-------- 393 (795)
T ss_dssp EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCE-EEEESSSCEEEECTTTCCEEEEC--------
T ss_pred EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCE-EEEECCCCeEEEcCCCCcEEEEe--------
Confidence 7778888889999874444444322 11235999999988874 45777777888887543211110
Q ss_pred CCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCe-EEEEecCCeEEEEEeccCCcceeEEeeee---cCCcceEEE
Q 001391 395 NGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT-LYIATNHGYLYHTKLCDMDSVNWNKILQV---SEGMPIICM 470 (1088)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~-ll~~t~~g~i~~~~~~~~~~~~~~~~~~~---~~~~~i~~l 470 (1088)
...... . .......|.+++..+++. +.+++..+.++.++.. +.++...... -....+.++
T Consensus 394 ----------~~~~~~--~-~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~---~~~~~~~~~~~~~l~~~~v~~i 457 (795)
T 4a2l_A 394 ----------LQEDES--A-RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRN---SGQVENFNQRNSQLVNENVYAI 457 (795)
T ss_dssp ----------CC---------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETT---TCCEEEECTTTSCCSCSCEEEE
T ss_pred ----------cCCCCc--c-cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCC---CCcEEEeecCCCCcCCCeeEEE
Confidence 000000 0 000124689999988898 9999987778755432 2333222211 112346665
Q ss_pred ecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeee-e-ccccceeeeEEEeecCCCeEEEEECCCCeEE
Q 001391 471 DLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTW-S-AGIERQLLGTYWCKSLGHRFIFTADPKGRLK 548 (1088)
Q Consensus 471 ~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~ 548 (1088)
..... ..+-+|+. +.+.+|+..++..... .... . ......+.. .+...+|++.+... +-+.
T Consensus 458 ~~d~~---------g~lwigt~-~Gl~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~--i~~d~~g~lWigt~--~Gl~ 520 (795)
T 4a2l_A 458 LPDGE---------GNLWLGTL-SALVRFNPEQRSFTTI---EKEKDGTPVVSKQITT--LFRDSHKRLWIGGE--EGLS 520 (795)
T ss_dssp EECSS---------SCEEEEES-SCEEEEETTTTEEEEC---CBCTTCCBCCCCCEEE--EEECTTCCEEEEES--SCEE
T ss_pred EECCC---------CCEEEEec-CceeEEeCCCCeEEEc---cccccccccCCceEEE--EEECCCCCEEEEeC--CceE
Confidence 54332 33444454 4577787654332110 0000 0 000111222 23556777776554 4477
Q ss_pred EEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcc
Q 001391 549 LWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (1088)
Q Consensus 549 vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~ 612 (1088)
.|+...... .. ........-....|.++...++|++.+... . -+..|+..+.
T Consensus 521 ~~~~~~~~~--~~--------~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~ 572 (795)
T 4a2l_A 521 VFKQEGLDI--QK--------ASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDK 572 (795)
T ss_dssp EEEEETTEE--EE--------CCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTT
T ss_pred EEeCCCCeE--EE--------ecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCC
Confidence 788754321 00 000000012345688998888898776544 3 6788886643
No 202
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.96 E-value=1.7e-08 Score=125.28 Aligned_cols=248 Identities=6% Similarity=-0.096 Sum_probs=151.8
Q ss_pred eeEEEEEeccCCCCCCCCEEEEEe------CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 19 EISALCFVHLPSHLSSLPFLLAGS------GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~laag~------d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
.+.+++|| || +++||.+. +.+|++||+.+|+.+..-. .......+++|+ |||+ .++.
T Consensus 122 ~~~~~~~S--PD----G~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~~~~~~~~ws-------pDg~---~l~~ 184 (695)
T 2bkl_A 122 SLGTWAVS--WD----GKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDV-IEGGKYATPKWT-------PDSK---GFYY 184 (695)
T ss_dssp EEEEEEEC--TT----SSEEEEEEEETTCSCCEEEEEETTTCCBCSSCC-BSCCTTCCCEEC-------TTSS---EEEE
T ss_pred EEEEEEEC--CC----CCEEEEEECCCCCceEEEEEEECCCCCCcCCcc-cCcccccceEEe-------cCCC---EEEE
Confidence 68899999 99 89888533 2689999999998751111 122123678999 8883 4455
Q ss_pred EECCCE-------------EEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCC--
Q 001391 93 LFGEKR-------------VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN-- 157 (1088)
Q Consensus 93 ~~gd~~-------------v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg-- 157 (1088)
+..+.. |++|++.+... ...++.....|...+.++.|+| ||++|+..+.++
T Consensus 185 ~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~-----------~~~lv~~~~~~~~~~~~~~~Sp---DG~~l~~~~~~~~~ 250 (695)
T 2bkl_A 185 EWLPTDPSIKVDERPGYTTIRYHTLGTEPS-----------KDTVVHERTGDPTTFLQSDLSR---DGKYLFVYILRGWS 250 (695)
T ss_dssp EECCCCTTSCGGGGGGGCEEEEEETTSCGG-----------GCEEEECCCCCTTCEEEEEECT---TSCCEEEEEEETTT
T ss_pred EEecCCCCCccccCCCCCEEEEEECCCCch-----------hceEEEecCCCCEEEEEEEECC---CCCEEEEEEeCCCC
Confidence 555554 99999875430 1235555566778899999999 999888877666
Q ss_pred --cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEe---cCCeEEEEEeccCccccCCCCCCCccCCCCCC
Q 001391 158 --SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT---IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (1088)
Q Consensus 158 --~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~---~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~ 232 (1088)
.|.+|+..+++. ..+..+.....+.+ + +++.+++... .++.|.+||+.
T Consensus 251 ~~~l~~~~~~~~~~-~~l~~~~~~~~~~~-~----~~g~l~~~s~~~~~~~~l~~~d~~--------------------- 303 (695)
T 2bkl_A 251 ENDVYWKRPGEKDF-RLLVKGVGAKYEVH-A----WKDRFYVLTDEGAPRQRVFEVDPA--------------------- 303 (695)
T ss_dssp EEEEEEECTTCSSC-EEEEECSSCCEEEE-E----ETTEEEEEECTTCTTCEEEEEBTT---------------------
T ss_pred ceEEEEEcCCCCce-EEeecCCCceEEEE-e----cCCcEEEEECCCCCCCEEEEEeCC---------------------
Confidence 667776655543 33333333222222 1 3444444443 25789999986
Q ss_pred CCceeEecccccceee--eEEEe-CC-CCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeecc-
Q 001391 233 DFKCFKLQDQQHTAVN--LFRLV-GH-EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH- 307 (1088)
Q Consensus 233 ~~~~~~~~~~~~~~~~--~~~~~-gh-~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h- 307 (1088)
++.. ...+. .+ ...+..++|+ ++..+++...|+..+||.+.... .... .+..+
T Consensus 304 ------------~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g-------~~~~--~l~~~~ 361 (695)
T 2bkl_A 304 ------------KPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKG-------KPVR--TVQLPG 361 (695)
T ss_dssp ------------BCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC-------CEEE--ECCCSS
T ss_pred ------------CCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC-------CeeE--EecCCC
Confidence 2221 22333 33 4567888888 67788899999999988765311 1122 23333
Q ss_pred CcceEEEEEC--CCEEE-EEe---CCCcEEEEcCCCceeEEEccc
Q 001391 308 NARVWDCCLT--DSFII-TAG---EDCTCRVWGSDGKQLKMIKEH 346 (1088)
Q Consensus 308 ~~~I~~v~~~--~~~l~-sg~---~Dg~i~vWd~~~~~~~~~~~h 346 (1088)
...+..+.++ +..++ +.+ ..+++++||+.......+..+
T Consensus 362 ~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~~~ 406 (695)
T 2bkl_A 362 VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWAKV 406 (695)
T ss_dssp SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEecC
Confidence 4556666665 34444 332 347899999843334445443
No 203
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.90 E-value=0.00072 Score=84.78 Aligned_cols=470 Identities=10% Similarity=0.030 Sum_probs=242.9
Q ss_pred eeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEE-e-----eeCCcceEEEEecccccccCC--Cccceee
Q 001391 19 EISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPF-Q-----VFHGIRLHGISCNFINCTEGS--VSTRVTF 89 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~-~-----~~~~~~V~~i~~s~~~~~~~~--d~~~~~~ 89 (1088)
.|.+|... ++ ++.|-.|+ ++-|..||..+++..... . ......|.+|... . ++ .
T Consensus 67 ~I~~i~~d--~~----g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d-------~~~~g----~ 129 (781)
T 3v9f_A 67 ELNEVYTD--PV----QPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSS-------VQAGK----G 129 (781)
T ss_dssp CEEEEEEC--SS----SSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEEC-------SSTTS----E
T ss_pred ccceEEEc--CC----CCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEec-------CccCC----C
Confidence 48888877 66 66244455 447999999887643221 1 0012247777765 5 55 5
Q ss_pred EEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeec--c-CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC
Q 001391 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL--P-RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (1088)
Q Consensus 90 ~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l--~-~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~ 166 (1088)
+.+...++.+..++..... ++..... . .....|.++...+ ++.+ ..|+.++-+..||..+
T Consensus 130 lwi~t~~~gl~~~~~~~~~-------------~~~~~~~~~~~l~~~~i~~i~~d~---~g~l-wigt~~~Gl~~~~~~~ 192 (781)
T 3v9f_A 130 LWVCTYYRGIEYLDIATGK-------------FTHYNKSTVPALPSEQTWTATEAE---DGKL-YIGHVEGGLSILSLND 192 (781)
T ss_dssp EEEEESSSCEEEEETTTTE-------------EEEESTTTCTTCSCCCEEEEEEEE---TTEE-EEEETTTEEEEEETTT
T ss_pred EEEEECCCCeeEEECCCCe-------------EEeeccCcccCCCccceEEEEECC---CCCE-EEEecCCCeEEEcCCC
Confidence 5555535567778765321 1111100 0 1235688888876 6654 4566665688899877
Q ss_pred CceEEEeccC------CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEec
Q 001391 167 SSIILEVHSP------ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240 (1088)
Q Consensus 167 ~~~~~~~~~~------~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 240 (1088)
++...-...+ ....+.++.. +.++.+.+ |+.. .|.+||..+.+... +
T Consensus 193 ~~~~~~~~~~~~~~~l~~~~i~~i~~---d~~g~lwi-gt~~-Gl~~~d~~~~~~~~----------------------~ 245 (781)
T 3v9f_A 193 KSVKHFVHDPQNPNSLPGNDVRCIYK---DTNGNIWI-GTSK-GLALFNANTETFTN----------------------F 245 (781)
T ss_dssp TEEEEECC--------CCSSEEEEEE---CTTCCEEE-EETT-EEEEEETTTTEEEC-----------------------
T ss_pred CceEeeecCCCCcccCCCCceeEEEE---cCCCCEEE-EeCC-cHheECCCCCcEEE----------------------E
Confidence 6543221111 0122444432 34554444 4444 68888876211000 0
Q ss_pred ccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCC--ceeeec--eeeeccCcceEEEEE
Q 001391 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDS--IEEVGS--SVLYGHNARVWDCCL 316 (1088)
Q Consensus 241 ~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~--~~~i~~--~~~~~h~~~I~~v~~ 316 (1088)
.. ... ....-....|.++...++|...+ |+..+-|.++|..+.....-.. ...+.. .........|.++..
T Consensus 246 ~~--~~~--~~~~l~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~ 320 (781)
T 3v9f_A 246 HN--NPG--NIHGALSSYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQ 320 (781)
T ss_dssp --------------CCCCEEEEEECTTSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEE
T ss_pred Ec--CCC--ccccccCceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEE
Confidence 00 000 00001245689999888876544 5554457888887653200000 000000 000113456888888
Q ss_pred C-CCEEEEEeCCCcEEEEcCCCceeEEEcc---------cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCccc
Q 001391 317 T-DSFIITAGEDCTCRVWGSDGKQLKMIKE---------HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLE 386 (1088)
Q Consensus 317 ~-~~~l~sg~~Dg~i~vWd~~~~~~~~~~~---------h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~ 386 (1088)
. ...|-.|..++-|..++........+.. -....|.++...+++.+ ..|+.++-+..++..+.....+.
T Consensus 321 D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~ 399 (781)
T 3v9f_A 321 DSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRVAIYNK 399 (781)
T ss_dssp CSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEEEECC-
T ss_pred eCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCeEEEcc
Confidence 7 4567778878888899885444444321 11235999999888874 45565666888887532111100
Q ss_pred CCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeee-ecCCc
Q 001391 387 SHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQ-VSEGM 465 (1088)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~-~~~~~ 465 (1088)
.+. ......|.++...+++.+.+++..+.++.+ +..+.++..... .....
T Consensus 400 ------------------~~~--------~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~---~~~~~~~~~~~~~~~~~~ 450 (781)
T 3v9f_A 400 ------------------ENR--------ELLSNSVLCSLKDSEGNLWFGTYLGNISYY---NTRLKKFQIIELEKNELL 450 (781)
T ss_dssp ------------------------------CCCSBEEEEEECTTSCEEEEETTEEEEEE---CSSSCEEEECCSTTTCCC
T ss_pred ------------------CCC--------CCCCcceEEEEECCCCCEEEEeccCCEEEE---cCCCCcEEEeccCCCCCC
Confidence 000 012246889998888999999987777744 333334433321 11234
Q ss_pred ceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCC
Q 001391 466 PIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKG 545 (1088)
Q Consensus 466 ~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg 545 (1088)
.+.++..... ..+-+|+. +.+..|+..++......... ........+.. .+...+|.+.+.....|
T Consensus 451 ~v~~i~~d~~---------g~lwigt~-~Gl~~~~~~~~~~~~~~~~~--~~~~~~~~i~~--i~~d~~g~lWigt~~~G 516 (781)
T 3v9f_A 451 DVRVFYEDKN---------KKIWIGTH-AGVFVIDLASKKVIHHYDTS--NSQLLENFVRS--IAQDSEGRFWIGTFGGG 516 (781)
T ss_dssp CEEEEEECTT---------SEEEEEET-TEEEEEESSSSSCCEEECTT--TSSCSCSCEEE--EEECTTCCEEEEESSSC
T ss_pred eEEEEEECCC---------CCEEEEEC-CceEEEeCCCCeEEecccCc--ccccccceeEE--EEEcCCCCEEEEEcCCC
Confidence 5666554332 34555555 55777876654432100000 00000111222 23556777776554455
Q ss_pred eEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcc
Q 001391 546 RLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (1088)
Q Consensus 546 ~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~ 612 (1088)
+..|+..... . ........-....|.++...++|.+.+... +|-|..|+..+.
T Consensus 517 -l~~~~~~~~~----~--------~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~ 569 (781)
T 3v9f_A 517 -VGIYTPDMQL----V--------RKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNF 569 (781)
T ss_dssp -EEEECTTCCE----E--------EEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTC
T ss_pred -EEEEeCCCCe----E--------EEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCC
Confidence 6667765321 0 000000001245688998888888776554 676588876543
No 204
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.89 E-value=2.1e-07 Score=106.34 Aligned_cols=261 Identities=9% Similarity=-0.024 Sum_probs=166.8
Q ss_pred CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE----------CCCEEEEEEeccCCCCCCC
Q 001391 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF----------GEKRVKLFELNFELSPNSQ 113 (1088)
Q Consensus 44 ~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~----------gd~~v~iw~l~~~~~~~~~ 113 (1088)
+.|.++|..+++.+.++..... . +++++ ||++ .++++. .++.|.++|..+.
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~-P--gia~S-------pDgk---~lyVan~~~~~~~~G~~~~~VsviD~~t~------ 159 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFL-P--HPVAA-------EDGS---FFAQASTVFERIARGKRTDYVEVFDPVTF------ 159 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSS-C--EEEEC-------TTSS---CEEEEEEEEEETTEEEEEEEEEEECTTTC------
T ss_pred CeEEEEECCCCEEEEEEECCCC-C--ceEEC-------CCCC---EEEEEeccccccccCCCCCEEEEEECCCC------
Confidence 6999999999999999997543 3 89999 8884 444443 3678999998753
Q ss_pred CCCccccccceeeeccC-------CCCcEEEEEEecccCCCCEEEEEEc--CCcEEEEEcCCCceEEEeccCCceeEEEE
Q 001391 114 YQPETCVNLSLVQSLPR-------LSHWVFDVCFLKVCNGNRSLAIGCS--DNSIRVWDISNSSIILEVHSPERCLLYSM 184 (1088)
Q Consensus 114 ~~~~~~~~~~~~~~l~~-------h~~~I~~v~f~p~~~d~~~lasgs~--Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~ 184 (1088)
+.+..+.- .......++|+| |+++|+++.. ++.|.+.|+.+++.+.++..+....++.
T Consensus 160 ---------~vv~~I~v~g~~r~~~g~~P~~~~~sp---DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p- 226 (426)
T 3c75_H 160 ---------LPIADIELPDAPRFLVGTYQWMNALTP---DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFP- 226 (426)
T ss_dssp ---------CEEEEEEETTCCCCCBSCCGGGSEECT---TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEE-
T ss_pred ---------cEEEEEECCCccccccCCCcceEEEcC---CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeecc-
Confidence 33333321 112346789999 9999998864 6899999999999998887543211111
Q ss_pred eeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCE-EEEE
Q 001391 185 KLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSI-FRIE 263 (1088)
Q Consensus 185 ~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V-~~v~ 263 (1088)
.....+++.+.||.+.+.+..+++.... ....+.-....+ ..+.
T Consensus 227 ------~g~~~~v~~~~dG~~~~V~~~~~~v~~~-----------------------------~~~~~~v~~~p~~~~~~ 271 (426)
T 3c75_H 227 ------ASPTVFYMNCRDGSLARVDFADGETKVT-----------------------------NTEVFHTEDELLINHPA 271 (426)
T ss_dssp ------EETTEEEEEETTSSEEEEECCTTCCEEE-----------------------------ECCCCSCTTSCBCSCCE
T ss_pred ------CCCcEEEEEcCCCCEEEEECCCCcEEEE-----------------------------eeeeeccCCCceeeEee
Confidence 1124556666788888777751111100 000011111111 1356
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeee-----c---cCcceEEEEEC--CCEEEEEeC-------
Q 001391 264 WSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY-----G---HNARVWDCCLT--DSFIITAGE------- 326 (1088)
Q Consensus 264 ~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~-----~---h~~~I~~v~~~--~~~l~sg~~------- 326 (1088)
|.++++.++..+..+.|.+.|...... ..+..+.+. . .......++++ +..++....
T Consensus 272 ~~~dg~~~~~~s~~g~V~ViD~~~~~~------~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gth 345 (426)
T 3c75_H 272 FSLRSGRLVWPTYTGKIFQADLTAEGA------TFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKH 345 (426)
T ss_dssp ECTTTCEEEEEBTTSEEEEEEECSSCE------EECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCT
T ss_pred ecCCCCEEEEEeCCCcEEEEeccCCce------EEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccc
Confidence 788988887778889999999876432 111100100 0 01111124565 455444432
Q ss_pred ---CCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC-EEEEEe-CCCCEEEEEcCC
Q 001391 327 ---DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAG-FDSAIKVHQFQA 379 (1088)
Q Consensus 327 ---Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~-~l~tg~-~Dg~I~iwd~~~ 379 (1088)
++.|.+.|. +.+.+..+.... ..++++|+||++ ++++.. .++.|.++|..+
T Consensus 346 k~~s~~VsVID~~T~kvv~~I~vg~--~P~gia~spDg~~~lyv~n~~s~~VsVID~~t 402 (426)
T 3c75_H 346 KAASRFVVVLNAETGERINKIELGH--EIDSINVSQDAEPLLYALSAGTQTLHIYDAAT 402 (426)
T ss_dssp TSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred cCCCCEEEEEECCCCeEEEEEECCC--CcCeEEEccCCCEEEEEEcCCCCeEEEEECCC
Confidence 357999999 788888876443 378999999999 888888 599999999954
No 205
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.88 E-value=2.5e-07 Score=115.77 Aligned_cols=245 Identities=9% Similarity=0.009 Sum_probs=154.3
Q ss_pred eeEEEEEeccCCCCCCCCEEEEEeC------CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEE
Q 001391 19 EISALCFVHLPSHLSSLPFLLAGSG------SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~laag~d------~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la 92 (1088)
.+.+++|| || +++||.+.+ .+|++||+.+|+.+.. .. ....+.+++|+ || + .++.
T Consensus 164 ~~~~~~~S--PD----G~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~-~~~~~~~~~ws-------pD-~---~l~~ 224 (741)
T 1yr2_A 164 ALDAWAAS--DD----GRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-EL-KWVKFSGLAWL-------GN-D---ALLY 224 (741)
T ss_dssp EEEEEEEC--TT----SSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EE-EEEESCCCEES-------TT-S---EEEE
T ss_pred EEEeEEEC--CC----CCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cC-CCceeccEEEE-------CC-C---EEEE
Confidence 68899999 99 898888653 3699999999987653 21 22234678898 77 4 5666
Q ss_pred EECCC--------------EEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCC-
Q 001391 93 LFGEK--------------RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN- 157 (1088)
Q Consensus 93 ~~gd~--------------~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg- 157 (1088)
+..++ .|.+|++.+.. ....++.....+...+..+.|+| ||++|+..+.++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~-----------~~~~lv~~~~~~~~~~~~~~~Sp---DG~~l~~~~~~~~ 290 (741)
T 1yr2_A 225 SRFAEPKEGQAFQALNYNQTVWLHRLGTPQ-----------SADQPVFATPELPKRGHGASVSS---DGRWVVITSSEGT 290 (741)
T ss_dssp EECCCC--------CCCCCEEEEEETTSCG-----------GGCEEEECCTTCTTCEEEEEECT---TSCEEEEEEECTT
T ss_pred EEecCcccccccccCCCCCEEEEEECCCCc-----------hhCEEEeccCCCCeEEEEEEECC---CCCEEEEEEEccC
Confidence 55443 37888876432 01134444445556799999999 999888877544
Q ss_pred ----cEEEEEcCCC--ceEEEeccCCceeEEEEeeecCCCCCcEEEEEec----CCeEEEEEeccCccccCCCCCCCccC
Q 001391 158 ----SIRVWDISNS--SIILEVHSPERCLLYSMKLWGDNLEALRIASGTI----YNEIIVWKVDWEHVAPLLNSPEGNHA 227 (1088)
Q Consensus 158 ----~V~iWd~~~~--~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~----dg~I~vwd~~~~~~~~~~~~~~~~s~ 227 (1088)
.|.+||+.++ +....+..+.....+.+ ++++..|+..+. ++.|.+||+.
T Consensus 291 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-----~~dg~~l~~~s~~~~~~~~l~~~d~~---------------- 349 (741)
T 1yr2_A 291 DPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-----DGVGDQLWFVSGDGAPLKKIVRVDLS---------------- 349 (741)
T ss_dssp CSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-----EEETTEEEEEECTTCTTCEEEEEECS----------------
T ss_pred CCcceEEEEECCCCCCcccEEecCCCCceEEEE-----eccCCEEEEEECCCCCCCEEEEEeCC----------------
Confidence 8999999877 31344443433322222 256777776655 3458888887
Q ss_pred CCCCCCCceeEecccccce--eeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeee
Q 001391 228 HGSSSDFKCFKLQDQQHTA--VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (1088)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~--~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~ 305 (1088)
.. .....+..+...+..+.+. ++..+++...|+..+||.+... ..... .+.
T Consensus 350 -----------------~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~-------g~~~~--~l~ 402 (741)
T 1yr2_A 350 -----------------GSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLD-------GKPAG--AVS 402 (741)
T ss_dssp -----------------SSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETT-------SCEEE--ECB
T ss_pred -----------------CCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC-------CCcee--ecc
Confidence 21 2223344555667778887 5667888899998888866521 11222 222
Q ss_pred -ccCcceEEEEEC--CC-EEEEEe---CCCcEEEEcCCCceeEEEc
Q 001391 306 -GHNARVWDCCLT--DS-FIITAG---EDCTCRVWGSDGKQLKMIK 344 (1088)
Q Consensus 306 -~h~~~I~~v~~~--~~-~l~sg~---~Dg~i~vWd~~~~~~~~~~ 344 (1088)
.+...+..+.++ +. ++++.+ ..+++++||+.+.....++
T Consensus 403 ~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l~ 448 (741)
T 1yr2_A 403 LPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPWE 448 (741)
T ss_dssp CSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEECS
T ss_pred CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence 235667788876 33 443333 3478999998443344444
No 206
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.88 E-value=2.1e-06 Score=97.67 Aligned_cols=261 Identities=8% Similarity=-0.004 Sum_probs=156.3
Q ss_pred CEEEEEe-CCeEEEEECCCCeeEEEEeeeCC--------cceEEEEecccccccCCCccceeeEEEEECCCEEEEEEecc
Q 001391 36 PFLLAGS-GSQVLLYDLEAGTLIRPFQVFHG--------IRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNF 106 (1088)
Q Consensus 36 ~~laag~-d~~I~vwd~~tg~~~~~~~~~~~--------~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~ 106 (1088)
..|.+++ ++.|..||.++|+.+.++..... ..+.+.-.. .++ .+++...++.|..+|..+
T Consensus 54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-------~~~----~v~v~~~~g~l~a~d~~t 122 (376)
T 3q7m_A 54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV-------SGG----HVYIGSEKAQVYALNTSD 122 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE-------ETT----EEEEEETTSEEEEEETTT
T ss_pred CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE-------eCC----EEEEEcCCCEEEEEECCC
Confidence 4555555 68999999999999887775321 122221111 233 677777789999999875
Q ss_pred CCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeE----E
Q 001391 107 ELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLL----Y 182 (1088)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~----~ 182 (1088)
.. ................+ .+..++.++.++.|..+|..+++.+.+......... .
T Consensus 123 G~---------------~~W~~~~~~~~~~~p~~-----~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~ 182 (376)
T 3q7m_A 123 GT---------------VAWQTKVAGEALSRPVV-----SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGES 182 (376)
T ss_dssp CC---------------EEEEEECSSCCCSCCEE-----ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCC
T ss_pred CC---------------EEEEEeCCCceEcCCEE-----ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCC
Confidence 43 22122111111111122 234677888899999999999998877654322110 0
Q ss_pred EEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCC-----
Q 001391 183 SMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG----- 257 (1088)
Q Consensus 183 s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~----- 257 (1088)
+.. ..+..++.++.++.|..+|.. +++.+........
T Consensus 183 ~~~-----~~~~~v~~g~~~g~l~~~d~~---------------------------------tG~~~w~~~~~~~~~~~~ 224 (376)
T 3q7m_A 183 APT-----TAFGAAVVGGDNGRVSAVLME---------------------------------QGQMIWQQRISQATGSTE 224 (376)
T ss_dssp CCE-----EETTEEEECCTTTEEEEEETT---------------------------------TCCEEEEEECCC------
T ss_pred CcE-----EECCEEEEEcCCCEEEEEECC---------------------------------CCcEEEEEecccCCCCcc
Confidence 111 123467778889999999987 3333322221100
Q ss_pred --CEEEEEEcC--CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEE
Q 001391 258 --SIFRIEWSS--CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVW 333 (1088)
Q Consensus 258 --~V~~v~~sp--~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vW 333 (1088)
.+..+...| .+..+..++.++.+..+|..+++. +. ... ......+...+..++.++.++.+..+
T Consensus 225 ~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~--------~w--~~~--~~~~~~~~~~~~~l~~~~~~g~l~~~ 292 (376)
T 3q7m_A 225 IDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI--------MW--KRE--LGSVNDFIVDGNRIYLVDQNDRVMAL 292 (376)
T ss_dssp -----CCCCCCEEETTEEEEECTTSCEEEEETTTCCE--------EE--EEC--CCCEEEEEEETTEEEEEETTCCEEEE
T ss_pred cccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE--------Ee--ecc--CCCCCCceEECCEEEEEcCCCeEEEE
Confidence 000010111 246777888899999999988643 11 111 12244555568889999999999999
Q ss_pred cC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 334 GS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 334 d~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
|. +|+.+..........+...... +..|+.++.+|.+.++|..+
T Consensus 293 d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d~~t 337 (376)
T 3q7m_A 293 TIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWINVED 337 (376)
T ss_dssp ETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEETTT
T ss_pred ECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEECCC
Confidence 98 8888777653222123333332 45788899999999999853
No 207
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.84 E-value=1.9e-06 Score=94.92 Aligned_cols=241 Identities=9% Similarity=0.045 Sum_probs=150.8
Q ss_pred eeEEEEEeccCCCCCCCCEEEE-------Ee-CCeEEEEECCCCeeEEEEe----eeCCcceEEEEecccccccCCC-cc
Q 001391 19 EISALCFVHLPSHLSSLPFLLA-------GS-GSQVLLYDLEAGTLIRPFQ----VFHGIRLHGISCNFINCTEGSV-ST 85 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~laa-------g~-d~~I~vwd~~tg~~~~~~~----~~~~~~V~~i~~s~~~~~~~~d-~~ 85 (1088)
...+++|+ ++ +.++++ +. ++.|.+||..+++...... .+. ..+.+++++ ++ +
T Consensus 19 ~~~~~~~~--~~----g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~-~~~~~i~~~-------~~~g- 83 (314)
T 1pjx_A 19 GAEGPVFD--KN----GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYG-GIPAGCQCD-------RDAN- 83 (314)
T ss_dssp TCEEEEEC--TT----SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEE-CCEEEEEEC-------SSSS-
T ss_pred CccCceEC--CC----CCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCC-CCCceEEEe-------cCCC-
Confidence 35689999 88 777777 34 6899999998887643222 022 358999998 77 6
Q ss_pred ceeeEEEEECCCEEEEEEeccCCCCCCCCCCcccccccee-ee-ccC-CCCcEEEEEEecccCCCCEEEEEEcC------
Q 001391 86 RVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLV-QS-LPR-LSHWVFDVCFLKVCNGNRSLAIGCSD------ 156 (1088)
Q Consensus 86 ~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~-~~-l~~-h~~~I~~v~f~p~~~d~~~lasgs~D------ 156 (1088)
.++++..++.|.+|+.+ .. ...+ .. ..+ ....+.++++.| ++++.++...+
T Consensus 84 ---~l~v~~~~~~l~~~d~~-g~-------------~~~~~~~~~~~~~~~~~~~i~~d~---~g~l~v~~~~~~~~~~~ 143 (314)
T 1pjx_A 84 ---QLFVADMRLGLLVVQTD-GT-------------FEEIAKKDSEGRRMQGCNDCAFDY---EGNLWITAPAGEVAPAD 143 (314)
T ss_dssp ---EEEEEETTTEEEEEETT-SC-------------EEECCSBCTTSCBCBCCCEEEECT---TSCEEEEECBCBCTTSC
T ss_pred ---cEEEEECCCCEEEEeCC-CC-------------EEEEEeccCCCccccCCcCEEECC---CCCEEEEecCccccccc
Confidence 66666666688888876 32 1111 11 111 224688999999 89877766554
Q ss_pred ---------CcEEEEEcCCCceEEEeccCCceeEEEEeee-cCCCCCcEE-EEEecCCeEEEEEecc-CccccCCCCCCC
Q 001391 157 ---------NSIRVWDISNSSIILEVHSPERCLLYSMKLW-GDNLEALRI-ASGTIYNEIIVWKVDW-EHVAPLLNSPEG 224 (1088)
Q Consensus 157 ---------g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~-~~s~~~~~l-~sg~~dg~I~vwd~~~-~~~~~~~~~~~~ 224 (1088)
+.|..|+.. ++......... ....+++. ..++++..+ ++...++.|.+|+... ++..
T Consensus 144 ~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~--~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~-------- 212 (314)
T 1pjx_A 144 YTRSMQEKFGSIYCFTTD-GQMIQVDTAFQ--FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIE-------- 212 (314)
T ss_dssp CCBTTSSSCEEEEEECTT-SCEEEEEEEES--SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEE--------
T ss_pred ccccccCCCCeEEEECCC-CCEEEeccCCC--CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccc--------
Confidence 456667665 44332221111 12233331 012667554 4455678999999751 0000
Q ss_pred ccCCCCCCCCceeEecccccceeeeEEEeCCC-CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeecee
Q 001391 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE-GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSV 303 (1088)
Q Consensus 225 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~ 303 (1088)
.......+.++. ..+..++++++|..+++...++.|.+||..+++. +. .
T Consensus 213 --------------------~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~--------~~--~ 262 (314)
T 1pjx_A 213 --------------------NKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP--------KM--R 262 (314)
T ss_dssp --------------------EEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSC--------SE--E
T ss_pred --------------------cceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcE--------eE--E
Confidence 111233344454 6688999999999999888889999999875432 21 3
Q ss_pred eeccCcceEEEEEC--CC-EEEEEeCCCcEEEEcC
Q 001391 304 LYGHNARVWDCCLT--DS-FIITAGEDCTCRVWGS 335 (1088)
Q Consensus 304 ~~~h~~~I~~v~~~--~~-~l~sg~~Dg~i~vWd~ 335 (1088)
+..+...+.+++++ +. ++++...++.|..|+.
T Consensus 263 ~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 263 IRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp EECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred EeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence 34455678999997 45 4455556688999987
No 208
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.84 E-value=3.3e-07 Score=114.65 Aligned_cols=236 Identities=10% Similarity=0.033 Sum_probs=150.9
Q ss_pred ceEEEEecccccccCCCccceeeEEEEEC----C--CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEE
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFG----E--KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCF 140 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~g----d--~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f 140 (1088)
.+.+++|| ||| .+|+... + ..|++||+..+. .+.. ..+...+..++|
T Consensus 164 ~~~~~~~S-------PDG----~~la~~~~~~G~e~~~i~v~dl~tg~---------------~~~~-~~~~~~~~~~~w 216 (741)
T 1yr2_A 164 ALDAWAAS-------DDG----RLLAYSVQDGGSDWRTVKFVGVADGK---------------PLAD-ELKWVKFSGLAW 216 (741)
T ss_dssp EEEEEEEC-------TTS----SEEEEEEEETTCSEEEEEEEETTTCC---------------EEEE-EEEEEESCCCEE
T ss_pred EEEeEEEC-------CCC----CEEEEEEcCCCCceEEEEEEECCCCC---------------CCCc-cCCCceeccEEE
Confidence 57889999 888 4454432 1 469999998643 1111 111112357899
Q ss_pred ecccCCCCEEEEEEcCCc--------------EEEEEcCCCce--EEEeccCCc-eeEEEEeeecCCCCCcEEEEEecCC
Q 001391 141 LKVCNGNRSLAIGCSDNS--------------IRVWDISNSSI--ILEVHSPER-CLLYSMKLWGDNLEALRIASGTIYN 203 (1088)
Q Consensus 141 ~p~~~d~~~lasgs~Dg~--------------V~iWd~~~~~~--~~~~~~~~~-~~~~s~~~~~~s~~~~~l~sg~~dg 203 (1088)
+| | +.|+.++.|+. |++|++.++.. ...+..+.. ....++.+ ++|+.+|+....++
T Consensus 217 sp---D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~---SpDG~~l~~~~~~~ 289 (741)
T 1yr2_A 217 LG---N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASV---SSDGRWVVITSSEG 289 (741)
T ss_dssp ST---T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE---CTTSCEEEEEEECT
T ss_pred EC---C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEE---CCCCCEEEEEEEcc
Confidence 99 9 88888876654 88999977652 222222221 12445544 78998887766543
Q ss_pred -----eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccce-ee-eEEEeCCCCCEEEEEEcCCCCEEEEEEC
Q 001391 204 -----EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA-VN-LFRLVGHEGSIFRIEWSSCGSKLVSVSD 276 (1088)
Q Consensus 204 -----~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~-~~~~~gh~~~V~~v~~sp~g~~l~s~s~ 276 (1088)
.|.+||+. ++ .. ...+..+...+.... +|+|+.|+..+.
T Consensus 290 ~~~~~~l~~~d~~---------------------------------~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~ 335 (741)
T 1yr2_A 290 TDPVNTVHVARVT---------------------------------NGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSG 335 (741)
T ss_dssp TCSCCEEEEEEEE---------------------------------TTEECCCEEEECSSSSCEEEE-EEETTEEEEEEC
T ss_pred CCCcceEEEEECC---------------------------------CCCCcccEEecCCCCceEEEE-eccCCEEEEEEC
Confidence 89999987 22 12 445555655555554 489998888776
Q ss_pred C----CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC--CCceeEEEccc-CC
Q 001391 277 D----RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS--DGKQLKMIKEH-IG 348 (1088)
Q Consensus 277 D----g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~--~~~~~~~~~~h-~~ 348 (1088)
+ +.|.+||+.+.. .... .....+...+..+.+. +.++++...|+..++|.. +++....+..+ .+
T Consensus 336 ~~~~~~~l~~~d~~~~~-------~~~~-~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~ 407 (741)
T 1yr2_A 336 DGAPLKKIVRVDLSGST-------PRFD-TVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIG 407 (741)
T ss_dssp TTCTTCEEEEEECSSSS-------CEEE-EEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSC
T ss_pred CCCCCCEEEEEeCCCCc-------cccE-EEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCe
Confidence 4 459999987631 0111 1333444556677777 567788889998777765 57777777654 34
Q ss_pred CCeEEEEEcCCCCEEE-EEe---CCCCEEEEEcCC
Q 001391 349 RGIWRCLYDSLSSLLV-TAG---FDSAIKVHQFQA 379 (1088)
Q Consensus 349 ~~V~~l~~~~dg~~l~-tg~---~Dg~I~iwd~~~ 379 (1088)
.|..+.++|+++.|+ +.+ ..++|.+||+.+
T Consensus 408 -~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 408 -SASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp -EEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred -EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 588899999987555 222 347899999854
No 209
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.84 E-value=4.1e-08 Score=110.62 Aligned_cols=170 Identities=8% Similarity=-0.001 Sum_probs=125.8
Q ss_pred cEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc-----------eEEEeccCCceeEEEEeeecCCCCCcEEEEEecC
Q 001391 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-----------IILEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (1088)
Q Consensus 134 ~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~-----------~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d 202 (1088)
.+..+++++ ...++++|+.++ +++|++.... ...... ... ++.+.| ++.+|+++ .+
T Consensus 39 ~~nlLais~---~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~--lp~-V~~l~f-----d~~~L~v~-~~ 105 (388)
T 1xip_A 39 SLQNLDISN---SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPD-VIFVCF-----HGDQVLVS-TR 105 (388)
T ss_dssp CCBCEEEET---TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTT-EEEEEE-----ETTEEEEE-ES
T ss_pred cccEEEEcC---CCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEee--CCC-eeEEEE-----CCCEEEEE-cC
Confidence 689999999 999999999875 6669975433 111222 223 667776 67888888 88
Q ss_pred CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEE
Q 001391 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARI 282 (1088)
Q Consensus 203 g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~i 282 (1088)
+.|++||+. ..........|+..+..+.+.+.. +++++.||.+.+
T Consensus 106 ~~l~v~dv~---------------------------------sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v 150 (388)
T 1xip_A 106 NALYSLDLE---------------------------------ELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSA 150 (388)
T ss_dssp SEEEEEESS---------------------------------STTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEE
T ss_pred CcEEEEEch---------------------------------hhhccCccceeecceeeEEecCCC--EEEEECCCCEEE
Confidence 999999997 222233445677778888876543 889999999999
Q ss_pred EEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCCcEEEEcCCCce---eEEE------c---ccCCCC
Q 001391 283 WEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQ---LKMI------K---EHIGRG 350 (1088)
Q Consensus 283 Wd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~~~~~---~~~~------~---~h~~~~ 350 (1088)
||+.++.. ..+...|.|++|++.-++.|..||++++|+.++.. ..++ . +|.. .
T Consensus 151 ~dl~~~~~--------------~~~~~~Vs~v~WSpkG~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~-~ 215 (388)
T 1xip_A 151 LDLRTKST--------------KQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEY-S 215 (388)
T ss_dssp EETTTCCE--------------EEEEESEEEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTS-E
T ss_pred EEccCCcc--------------ccccCCceEEEEcCCceEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCe-e
Confidence 99997532 11446899999996558999999999999986555 4456 2 2555 6
Q ss_pred eEEEEEcCCCCEEEEE
Q 001391 351 IWRCLYDSLSSLLVTA 366 (1088)
Q Consensus 351 V~~l~~~~dg~~l~tg 366 (1088)
|.++.|.+++.++++=
T Consensus 216 V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 216 PLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEEEEESSSSEEEEEE
T ss_pred EEEEEEecCCeEEEEE
Confidence 9999999998887753
No 210
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.83 E-value=1.2e-06 Score=98.14 Aligned_cols=273 Identities=11% Similarity=0.071 Sum_probs=168.7
Q ss_pred CCCceEEecCCCceeeeeE-----EEEEeccCCCCCCCCEEEEEe-----------CCeEEEEECCCCeeEEEEeeeC--
Q 001391 3 KKDLSEWRLDVGQYLGEIS-----ALCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDLEAGTLIRPFQVFH-- 64 (1088)
Q Consensus 3 d~~i~iWdl~~g~~~~~V~-----~v~fs~~pd~~~~~~~laag~-----------d~~I~vwd~~tg~~~~~~~~~~-- 64 (1088)
++.|.+.|..+++..+.|. .++++ || +++|.++. ++.|.+||..+++.+.++....
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~P~va~s--pD----G~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~ 131 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFLPNPVVA--DD----GSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP 131 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSCEEEEC--TT----SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred CCEEEEEECCCCeEEEEEECCCCCcEEEC--CC----CCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcc
Confidence 5679999999988443332 59999 99 77666543 4789999999999999987643
Q ss_pred ----CcceEEEEecccccccCCCccceeeEEEEE-C-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEE
Q 001391 65 ----GIRLHGISCNFINCTEGSVSTRVTFEVALF-G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDV 138 (1088)
Q Consensus 65 ----~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v 138 (1088)
+..-++++|+ |||+ .++++. . +++|.++|+.+. +.+.++.-- + |.
T Consensus 132 r~~~g~~P~~~a~s-------pDGk---~lyVan~~~~~~VsVID~~t~---------------~vv~tI~v~-g---~~ 182 (386)
T 3sjl_D 132 RFLVGTYPWMTSLT-------PDGK---TLLFYQFSPAPAVGVVDLEGK---------------AFKRMLDVP-D---CY 182 (386)
T ss_dssp CCCBSCCGGGEEEC-------TTSS---EEEEEECSSSCEEEEEETTTT---------------EEEEEEECC-S---EE
T ss_pred ccccCCCCceEEEc-------CCCC---EEEEEEcCCCCeEEEEECCCC---------------cEEEEEECC-C---cc
Confidence 2246789999 8884 455553 3 689999999853 444444321 1 11
Q ss_pred EEecccCCCCEEEEEEcCCcEEEEEcCC-CceEEEec---cCCceeEEE-EeeecCCCCCcEEEEEecCCeEEEEEeccC
Q 001391 139 CFLKVCNGNRSLAIGCSDNSIRVWDISN-SSIILEVH---SPERCLLYS-MKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (1088)
Q Consensus 139 ~f~p~~~d~~~lasgs~Dg~V~iWd~~~-~~~~~~~~---~~~~~~~~s-~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~ 213 (1088)
.+.|. ..+.+++.+.||.+.+.++.+ ++...... ......++. ..+. .+++.+++ .+.+|.|.+.|..+.
T Consensus 183 ~~~P~--g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~--~~dG~~~~-vs~~g~V~v~d~~~~ 257 (386)
T 3sjl_D 183 HIFPT--APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYS--QKAGRLVW-PTYTGKIHQIDLSSG 257 (386)
T ss_dssp EEEEE--ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEE--TTTTEEEE-EBTTSEEEEEECTTS
T ss_pred eeecC--CCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeE--cCCCcEEE-EeCCCEEEEEECCCC
Confidence 22341 445677788899999999876 55432221 111111111 1111 24565444 455899999998622
Q ss_pred ccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe---------C-CCCCEEEEEEcCCCCEEEEEEC-------
Q 001391 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV---------G-HEGSIFRIEWSSCGSKLVSVSD------- 276 (1088)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~---------g-h~~~V~~v~~sp~g~~l~s~s~------- 276 (1088)
.. ..+..+. + ..+....++++|+++.+.....
T Consensus 258 ~~-------------------------------~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~h 306 (386)
T 3sjl_D 258 DA-------------------------------KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRH 306 (386)
T ss_dssp SC-------------------------------EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCT
T ss_pred cc-------------------------------eeecceeccccccccccccCCCcceeeECCCCCeEEEEecccccccc
Confidence 11 0111110 0 0122334677899988777643
Q ss_pred ---CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CC-EEEEE-eCCCcEEEEcC-CCceeEEEcccCC
Q 001391 277 ---DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS-FIITA-GEDCTCRVWGS-DGKQLKMIKEHIG 348 (1088)
Q Consensus 277 ---Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~-~l~sg-~~Dg~i~vWd~-~~~~~~~~~~h~~ 348 (1088)
...|.+.|+.+.+. ++. ...+ .+++.++++ +. +|++. ..+++|.++|. +++.+.++.....
T Consensus 307 k~~~~~V~viD~~t~kv--------~~~-i~vg--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~ 375 (386)
T 3sjl_D 307 KTASRFVVVLDAKTGER--------LAK-FEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH 375 (386)
T ss_dssp TSCEEEEEEEETTTCCE--------EEE-EEEE--EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCS
T ss_pred CCCCCEEEEEECCCCeE--------EEE-EECC--CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCC
Confidence 25788999988643 331 2223 368899998 33 55554 56899999999 8898888865433
Q ss_pred CCeEEEEEcCC
Q 001391 349 RGIWRCLYDSL 359 (1088)
Q Consensus 349 ~~V~~l~~~~d 359 (1088)
-..+.+++|
T Consensus 376 --p~~l~~s~d 384 (386)
T 3sjl_D 376 --GPQVITTAD 384 (386)
T ss_dssp --SCCEEEECC
T ss_pred --CceeEECCc
Confidence 345556555
No 211
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.82 E-value=8.6e-07 Score=102.04 Aligned_cols=249 Identities=10% Similarity=0.045 Sum_probs=153.4
Q ss_pred CcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCC--eEEEEEe
Q 001391 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN--EIIVWKV 210 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg--~I~vwd~ 210 (1088)
.....|+|+| +++++++...++.|++||..++............. +++ ++++..|+++..++ .|.+++.
T Consensus 131 ~~P~~la~d~---~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~---ia~---~~~g~~l~~~d~~~~~~I~~~d~ 201 (409)
T 3hrp_A 131 KYMWGIAAVG---NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK---PAV---TKDKQRVYSIGWEGTHTVYVYMK 201 (409)
T ss_dssp CCEEEEEECS---TTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB---CEE---CTTSSEEEEEBSSTTCEEEEEEG
T ss_pred CCceEEEEeC---CCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc---eeE---ecCCCcEEEEecCCCceEEEEEc
Confidence 4688999999 99877777778999999998877655444322211 333 57788888887766 7888887
Q ss_pred ccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE---eC-CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 001391 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL---VG-HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR 286 (1088)
Q Consensus 211 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~g-h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~ 286 (1088)
. .......+ .. +...+.+++++|++..|..+..++.|+.||..
T Consensus 202 ~---------------------------------~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~ 248 (409)
T 3hrp_A 202 A---------------------------------SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVK 248 (409)
T ss_dssp G---------------------------------GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETT
T ss_pred C---------------------------------CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECC
Confidence 6 22111222 12 45678899999965566667778899999988
Q ss_pred CCcccCCCCceeeeceeeeccCcce-E-EEEECC---CEEEEEeCCCcEEEEcCCCceeEEEcccC--------------
Q 001391 287 AEYWKDSDSIEEVGSSVLYGHNARV-W-DCCLTD---SFIITAGEDCTCRVWGSDGKQLKMIKEHI-------------- 347 (1088)
Q Consensus 287 ~~~~~~~~~~~~i~~~~~~~h~~~I-~-~v~~~~---~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~-------------- 347 (1088)
++.. ..+......++...- . .++|++ .++++-..++.|+.|+.+++ +..+.++.
T Consensus 249 ~~~~------~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~ 321 (409)
T 3hrp_A 249 TQEV------TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEAL 321 (409)
T ss_dssp TCCE------EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCB
T ss_pred CCCE------EEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccE
Confidence 7532 111100022222222 2 788873 35556667889999999776 33333332
Q ss_pred CCCeEEEEEcCCCCEEEEEe-CCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEE
Q 001391 348 GRGIWRCLYDSLSSLLVTAG-FDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLH 426 (1088)
Q Consensus 348 ~~~V~~l~~~~dg~~l~tg~-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 426 (1088)
-.....++++++|+++++-. .++.|+.|++....+.++.++....++.+ + ......-.....++
T Consensus 322 ~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~-------------g--~~~~~~~~~P~gia 386 (409)
T 3hrp_A 322 FAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQID-------------G--TPLEATFNYPYDIC 386 (409)
T ss_dssp CSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCC-------------B--STTTCCBSSEEEEE
T ss_pred eCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCC-------------C--ChhceEeCCceEEE
Confidence 12378999999999888877 88999999964332332222210000000 0 00011123578999
Q ss_pred eccCCeEEEEec-CCeEEEE
Q 001391 427 LTSEDTLYIATN-HGYLYHT 445 (1088)
Q Consensus 427 ~s~~~~ll~~t~-~g~i~~~ 445 (1088)
+.+++.++++.. ++.|..+
T Consensus 387 vd~~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 387 YDGEGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp ECSSSEEEEEESTTCEEEEE
T ss_pred EcCCCCEEEEECCCCeEEEE
Confidence 999988888754 4445544
No 212
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.81 E-value=7.3e-07 Score=98.35 Aligned_cols=239 Identities=8% Similarity=0.019 Sum_probs=148.4
Q ss_pred ceEEEEecccccccCCCccceeeEEEE--------ECCCEEEEEEeccCCCCCCCCCCccccccceeee--ccCCCCcEE
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVAL--------FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQS--LPRLSHWVF 136 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~--------~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~--l~~h~~~I~ 136 (1088)
...+++|+ +++ .++++ ..++.|.+|+..... ...... ..++...+.
T Consensus 19 ~~~~~~~~-------~~g----~l~~~~~~~~~~~~~~~~i~~~d~~~g~-------------~~~~~~~~~~~~~~~~~ 74 (314)
T 1pjx_A 19 GAEGPVFD-------KNG----DFYIVAPEVEVNGKPAGEILRIDLKTGK-------------KTVICKPEVNGYGGIPA 74 (314)
T ss_dssp TCEEEEEC-------TTS----CEEEEETTCEETTEECCEEEEECTTTCC-------------EEEEECCEETTEECCEE
T ss_pred CccCceEC-------CCC----CEEEEEeccccCCCCCCEEEEEeCCCCc-------------EEEEEecccCCCCCCCc
Confidence 46788888 676 45555 557899999876432 111111 123556799
Q ss_pred EEEEecccCC-CCEEEEEEcCCcEEEEEcCCCceEEE-eccC---CceeEEEEeeecCCCCCcEEEEEecC---------
Q 001391 137 DVCFLKVCNG-NRSLAIGCSDNSIRVWDISNSSIILE-VHSP---ERCLLYSMKLWGDNLEALRIASGTIY--------- 202 (1088)
Q Consensus 137 ~v~f~p~~~d-~~~lasgs~Dg~V~iWd~~~~~~~~~-~~~~---~~~~~~s~~~~~~s~~~~~l~sg~~d--------- 202 (1088)
++++++ + +++++ +...+.|.+||.. ++.... .... .......+.+ ++++.+.++...+
T Consensus 75 ~i~~~~---~~g~l~v-~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~---d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 75 GCQCDR---DANQLFV-ADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAF---DYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp EEEECS---SSSEEEE-EETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEE---CTTSCEEEEECBCBCTTSCCCB
T ss_pred eEEEec---CCCcEEE-EECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEE---CCCCCEEEEecCcccccccccc
Confidence 999998 8 65444 4445579999988 654332 2111 1122344444 4667766665544
Q ss_pred ------CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEc----CCCCEEE
Q 001391 203 ------NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS----SCGSKLV 272 (1088)
Q Consensus 203 ------g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~s----p~g~~l~ 272 (1088)
+.|..|+.. ++ ...+..+......++++ |+++.+.
T Consensus 147 ~~~~~~~~l~~~~~~----------------------------------g~-~~~~~~~~~~~~~i~~~~~~d~dg~~l~ 191 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD----------------------------------GQ-MIQVDTAFQFPNGIAVRHMNDGRPYQLI 191 (314)
T ss_dssp TTSSSCEEEEEECTT----------------------------------SC-EEEEEEEESSEEEEEEEECTTSCEEEEE
T ss_pred cccCCCCeEEEECCC----------------------------------CC-EEEeccCCCCcceEEEecccCCCCCEEE
Confidence 344444432 11 11222334557889999 9997654
Q ss_pred -EEECCCcEEEEEcC-CCcccCCCCceeeeceeeeccC-cceEEEEEC--CCEEEEEeCCCcEEEEcCC-CceeEEEccc
Q 001391 273 -SVSDDRSARIWEVR-AEYWKDSDSIEEVGSSVLYGHN-ARVWDCCLT--DSFIITAGEDCTCRVWGSD-GKQLKMIKEH 346 (1088)
Q Consensus 273 -s~s~Dg~v~iWd~~-~~~~~~~~~~~~i~~~~~~~h~-~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~-~~~~~~~~~h 346 (1088)
+...++.|.+|+.. +++.. ..+.+. .+.++. ..+..++++ +.++++...++.|.+|+.. ++.+..+..+
T Consensus 192 v~~~~~~~i~~~~~~~~g~~~---~~~~~~--~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~ 266 (314)
T 1pjx_A 192 VAETPTKKLWSYDIKGPAKIE---NKKVWG--HIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP 266 (314)
T ss_dssp EEETTTTEEEEEEEEETTEEE---EEEEEE--ECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECS
T ss_pred EEECCCCeEEEEECCCCCccc---cceEEE--ECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCC
Confidence 44567899999986 32210 001111 233343 567788887 5677777788999999995 7777777666
Q ss_pred CCCCeEEEEEcCCCCEE-EEEeCCCCEEEEEcC
Q 001391 347 IGRGIWRCLYDSLSSLL-VTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 347 ~~~~V~~l~~~~dg~~l-~tg~~Dg~I~iwd~~ 378 (1088)
.. .+.+++++++++.| ++...++.|..|++.
T Consensus 267 ~~-~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 267 FE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp SS-CEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CC-CceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 55 59999999999944 555567889999874
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.77 E-value=1.7e-06 Score=99.60 Aligned_cols=235 Identities=10% Similarity=0.025 Sum_probs=148.4
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECC
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd 96 (1088)
....+|+|+ |+ ++++++.. ++.|++||..++++........ ..+ ++|+ ++++ .++++..+
T Consensus 131 ~~P~~la~d--~~----g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~--~~~-ia~~-------~~g~---~l~~~d~~ 191 (409)
T 3hrp_A 131 KYMWGIAAV--GN----NTVLAYQRDDPRVRLISVDDNKVTTVHPGFK--GGK-PAVT-------KDKQ---RVYSIGWE 191 (409)
T ss_dssp CCEEEEEEC--ST----TEEEEEETTTTEEEEEETTTTEEEEEEETCC--BCB-CEEC-------TTSS---EEEEEBSS
T ss_pred CCceEEEEe--CC----CCEEEEecCCCcEEEEECCCCEEEEeeccCC--CCc-eeEe-------cCCC---cEEEEecC
Confidence 457799999 88 77777766 4899999999887765554422 345 8888 7762 34444443
Q ss_pred C--EEEEEEeccCCCCCCCCCCccccccceeeeccC-CCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEE-
Q 001391 97 K--RVKLFELNFELSPNSQYQPETCVNLSLVQSLPR-LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE- 172 (1088)
Q Consensus 97 ~--~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~- 172 (1088)
+ .|.+|+..... ....+..+.. ....+.+++++| ++..|+.+..++.|+.||..++.....
T Consensus 192 ~~~~I~~~d~~~~~------------~~~~~g~~~~~~~~~p~~iav~p---~~g~lyv~d~~~~I~~~d~~~~~~~~~~ 256 (409)
T 3hrp_A 192 GTHTVYVYMKASGW------------APTRIGQLGSTFSGKIGAVALDE---TEEWLYFVDSNKNFGRFNVKTQEVTLIK 256 (409)
T ss_dssp TTCEEEEEEGGGTT------------CEEEEEECCTTSCSCCCBCEECT---TSSEEEEECTTCEEEEEETTTCCEEEEE
T ss_pred CCceEEEEEcCCCc------------eeEEeeeccchhcCCcEEEEEeC---CCCeEEEEECCCcEEEEECCCCCEEEEe
Confidence 3 77777765322 0111212222 456788999999 777777777788999999987764322
Q ss_pred ---eccCCceeEE-EEeeecCCC-CCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccccee
Q 001391 173 ---VHSPERCLLY-SMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1088)
Q Consensus 173 ---~~~~~~~~~~-s~~~~~~s~-~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 247 (1088)
........-+ .+++ ++ ++.++++....+.|+.|+... .
T Consensus 257 ~~~~~g~~~~~P~~~ia~---~p~~g~lyv~d~~~~~I~~~~~~g---------------------------------~- 299 (409)
T 3hrp_A 257 QLELSGSLGTNPGPYLIY---YFVDSNFYMSDQNLSSVYKITPDG---------------------------------E- 299 (409)
T ss_dssp ECCCCSCCCCSSCCEEEE---ETTTTEEEEEETTTTEEEEECTTC---------------------------------C-
T ss_pred cccccCCCCCCccccEEE---eCCCCEEEEEeCCCCEEEEEecCC---------------------------------C-
Confidence 1111111102 4444 35 466667777788899998761 0
Q ss_pred eeEEEeCC---------------CCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCcccCCCCceeeeceeeecc----
Q 001391 248 NLFRLVGH---------------EGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH---- 307 (1088)
Q Consensus 248 ~~~~~~gh---------------~~~V~~v~~sp~g~~l~s~s-~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h---- 307 (1088)
+..+.++ -....+++++|+|.++++-+ .++.|+.|++.++.. . .+.++
T Consensus 300 -~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v------~-----~~~g~~~~~ 367 (409)
T 3hrp_A 300 -CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV------S-----TVAGQVDVA 367 (409)
T ss_dssp -EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE------E-----EEEECTTCB
T ss_pred -EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE------E-----EEeCCCCCC
Confidence 1111111 24588999999999888888 889999999766532 1 22222
Q ss_pred -----------CcceEEEEEC--CCEEEEEeCCCcEEEEcC
Q 001391 308 -----------NARVWDCCLT--DSFIITAGEDCTCRVWGS 335 (1088)
Q Consensus 308 -----------~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~ 335 (1088)
-.....++++ +.++++-..++.|+.+++
T Consensus 368 g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 368 SQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp SCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 2357788887 445566666677776653
No 214
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.77 E-value=1.5e-05 Score=90.32 Aligned_cols=254 Identities=11% Similarity=-0.001 Sum_probs=158.1
Q ss_pred CceEEecCCCceeeee-----EEEEEeccCCCCCCCCEEEEEe-----------CCeEEEEECCCCeeEEEEeee-C---
Q 001391 5 DLSEWRLDVGQYLGEI-----SALCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDLEAGTLIRPFQVF-H--- 64 (1088)
Q Consensus 5 ~i~iWdl~~g~~~~~V-----~~v~fs~~pd~~~~~~~laag~-----------d~~I~vwd~~tg~~~~~~~~~-~--- 64 (1088)
+|.++|..+++..+.| ..++|+ || +++|.++. ++.|.+||..+.+.+.++... .
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p~i~~s--pD----g~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~ 121 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLPNPVAA--HS----GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRF 121 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCCCeEEC--CC----CCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccc
Confidence 7899999998843322 389999 99 88888864 468999999999998887653 1
Q ss_pred --CcceEEEEecccccccCCCccceeeEEEEE-C-CCEEEEEEeccCCCCCCCCCCccccccceeee-ccCCCCcEEEEE
Q 001391 65 --GIRLHGISCNFINCTEGSVSTRVTFEVALF-G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQS-LPRLSHWVFDVC 139 (1088)
Q Consensus 65 --~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~-l~~h~~~I~~v~ 139 (1088)
+..-..++++ |||+ .++++. . +++|.++| ... +.+.. +.. .. ++.
T Consensus 122 ~~g~~p~~~~~s-------pDG~---~l~v~n~~~~~~v~viD-~t~---------------~~~~~~i~~-~~---~~~ 171 (373)
T 2mad_H 122 DVGPYSWMNANT-------PNNA---DLLFFQFAAGPAVGLVV-QGG---------------SSDDQLLSS-PT---CYH 171 (373)
T ss_pred ccCCCccceEEC-------CCCC---EEEEEecCCCCeEEEEE-CCC---------------CEEeEEcCC-Cc---eEE
Confidence 1234678898 8884 455444 3 58899999 753 33444 322 11 245
Q ss_pred EecccCCC-CEEEEEEcCCcEEEEEcCCCceEEEec-----cCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccC
Q 001391 140 FLKVCNGN-RSLAIGCSDNSIRVWDISNSSIILEVH-----SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (1088)
Q Consensus 140 f~p~~~d~-~~lasgs~Dg~V~iWd~~~~~~~~~~~-----~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~ 213 (1088)
+.| ++ ..+++.+.||.+.++|. +++...... ...........+ .+++..++..+..+.+.+.|+...
T Consensus 172 ~~~---~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~~~~~v~vid~~~~ 244 (373)
T 2mad_H 172 IHP---GAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQ---ANKSGRIVWPVYSGKILQADISAA 244 (373)
T ss_pred EEe---CCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeeccee---EecCCEEEEEcCCceEEEEeccCC
Confidence 556 44 45566778999999999 877664322 111111111111 122333333336788888888611
Q ss_pred ccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe----------CCCCCEEEEEEcCCCCEEEEEEC-------
Q 001391 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV----------GHEGSIFRIEWSSCGSKLVSVSD------- 276 (1088)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~----------gh~~~V~~v~~sp~g~~l~s~s~------- 276 (1088)
. ...+..+. -.......++++|+++.+..+..
T Consensus 245 ~-------------------------------~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~ 293 (373)
T 2mad_H 245 G-------------------------------ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKL 293 (373)
T ss_pred c-------------------------------ceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccc
Confidence 1 01111111 01123445789999988777543
Q ss_pred ---CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CC-EEEEEe-CCCcEEEEcC-CCceeEEE
Q 001391 277 ---DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS-FIITAG-EDCTCRVWGS-DGKQLKMI 343 (1088)
Q Consensus 277 ---Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~-~l~sg~-~Dg~i~vWd~-~~~~~~~~ 343 (1088)
.+.|.+.|..+. +.+. .+ .-....+.++|+ +. +++++. .++.|.++|. +++.+..+
T Consensus 294 ~~~~~~V~VID~~t~--------~vv~--~i-~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 294 HAAAKEVTSVTGLVG--------QTSS--QI-SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred cCCCCeEEEEECCCC--------EEEE--EE-ECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 357999999885 3333 22 222357899998 55 677777 5899999999 77777774
No 215
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.76 E-value=0.00087 Score=84.01 Aligned_cols=467 Identities=10% Similarity=0.035 Sum_probs=245.3
Q ss_pred CceEEecCCCcee--------------eeeEEEEEeccC--CCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEee-----
Q 001391 5 DLSEWRLDVGQYL--------------GEISALCFVHLP--SHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQV----- 62 (1088)
Q Consensus 5 ~i~iWdl~~g~~~--------------~~V~~v~fs~~p--d~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~----- 62 (1088)
.+..||..+++.. ..|.++... + + +.+.+ |+ ++-|..||..+++... +..
T Consensus 88 Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d--~~~~----g~lwi-~t~~~gl~~~~~~~~~~~~-~~~~~~~~ 159 (781)
T 3v9f_A 88 GLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSS--VQAG----KGLWV-CTYYRGIEYLDIATGKFTH-YNKSTVPA 159 (781)
T ss_dssp CEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEEC--SSTT----SEEEE-EESSSCEEEEETTTTEEEE-ESTTTCTT
T ss_pred CcceECCCCCeEEeeccccCCCCCcccCcceEEEec--CccC----CCEEE-EECCCCeeEEECCCCeEEe-eccCcccC
Confidence 4777777665521 247777776 5 5 54444 55 6669999988766432 221
Q ss_pred eCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeec-----cCCCCcEEE
Q 001391 63 FHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL-----PRLSHWVFD 137 (1088)
Q Consensus 63 ~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l-----~~h~~~I~~ 137 (1088)
.....|.++... +++ .+.+...++-+..|+..... .+..... .-....|.+
T Consensus 160 l~~~~i~~i~~d-------~~g----~lwigt~~~Gl~~~~~~~~~-------------~~~~~~~~~~~~~l~~~~i~~ 215 (781)
T 3v9f_A 160 LPSEQTWTATEA-------EDG----KLYIGHVEGGLSILSLNDKS-------------VKHFVHDPQNPNSLPGNDVRC 215 (781)
T ss_dssp CSCCCEEEEEEE-------ETT----EEEEEETTTEEEEEETTTTE-------------EEEECC--------CCSSEEE
T ss_pred CCccceEEEEEC-------CCC----CEEEEecCCCeEEEcCCCCc-------------eEeeecCCCCcccCCCCceeE
Confidence 112357777765 555 55555556568888865421 1111100 011356889
Q ss_pred EEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEecc------CCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEec
Q 001391 138 VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS------PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 138 v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~------~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
+...+ ++.+. .|+.+ -+.+||..+++...-... .....++++.. ..++ .|..|+..+-|.+++..
T Consensus 216 i~~d~---~g~lw-igt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~---d~~g-~lWigt~~~Gl~~~~~~ 286 (781)
T 3v9f_A 216 IYKDT---NGNIW-IGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQ---LKDN-KLWIATELNGIMILDLQ 286 (781)
T ss_dssp EEECT---TCCEE-EEETT-EEEEEETTTTEEEC-----------CCCCEEEEEE---CTTS-EEEEEESSSCEEEEETT
T ss_pred EEEcC---CCCEE-EEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEE---CCCC-CEEEEeCCCCeEEECCC
Confidence 88877 77654 45555 688999876654321111 11233555443 3444 45556665678888876
Q ss_pred cCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE-------eCCCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 001391 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-------VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (1088)
Q Consensus 212 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-------~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd 284 (1088)
+...... .......+ .-....|.++...++|..- .|+.++-|..++
T Consensus 287 ~~~~~~~--------------------------~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lW-igt~~~Gl~~~~ 339 (781)
T 3v9f_A 287 QNQFLLP--------------------------EQIRFEFIREGDNNYSLSNASARYIFQDSFNNIW-IGTWGGGINFIS 339 (781)
T ss_dssp CC-----------------------------------CEEECBCSSTTSBSSSCEEEEEECSSCCEE-EEEBSSCEEEEC
T ss_pred CCeeeee--------------------------eccccccccCCCCCCCCCCCeEEEEEEeCCCCEE-EEecCCeEEEeC
Confidence 2211000 00000000 0134578999998888754 455556688888
Q ss_pred cCCCcccCCCCceeeece-----eeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcCCCceeEEEc---ccCCCCeEEEE
Q 001391 285 VRAEYWKDSDSIEEVGSS-----VLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGSDGKQLKMIK---EHIGRGIWRCL 355 (1088)
Q Consensus 285 ~~~~~~~~~~~~~~i~~~-----~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~~~~~~~~~~---~h~~~~V~~l~ 355 (1088)
...... ..+... ........|.+++.. ...|-.|..++-+..|+........+. ......|+++.
T Consensus 340 ~~~~~~------~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 413 (781)
T 3v9f_A 340 NAPPTF------HTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSL 413 (781)
T ss_dssp SSCCSC------EEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEE
T ss_pred CCCCcc------eeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEE
Confidence 765432 111100 001123468888887 466777887777888987443333221 11123599999
Q ss_pred EcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEE
Q 001391 356 YDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI 435 (1088)
Q Consensus 356 ~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~ 435 (1088)
..+++.+.+ |+.++-+..++..+.....+. .+ ......|+++...+++.+.+
T Consensus 414 ~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~------------------~~---------~~~~~~v~~i~~d~~g~lwi 465 (781)
T 3v9f_A 414 KDSEGNLWF-GTYLGNISYYNTRLKKFQIIE------------------LE---------KNELLDVRVFYEDKNKKIWI 465 (781)
T ss_dssp ECTTSCEEE-EETTEEEEEECSSSCEEEECC------------------ST---------TTCCCCEEEEEECTTSEEEE
T ss_pred ECCCCCEEE-EeccCCEEEEcCCCCcEEEec------------------cC---------CCCCCeEEEEEECCCCCEEE
Confidence 888887544 666666777776432111110 00 01224688999988999999
Q ss_pred EecCCeEEEEEeccCCcceeEEeeeec----CCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCccee
Q 001391 436 ATNHGYLYHTKLCDMDSVNWNKILQVS----EGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLS 511 (1088)
Q Consensus 436 ~t~~g~i~~~~~~~~~~~~~~~~~~~~----~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~ 511 (1088)
++. +.++.++. .+..+....... ....+.++..... ..+-+|+..+.+..|+..++...
T Consensus 466 gt~-~Gl~~~~~---~~~~~~~~~~~~~~~~~~~~i~~i~~d~~---------g~lWigt~~~Gl~~~~~~~~~~~---- 528 (781)
T 3v9f_A 466 GTH-AGVFVIDL---ASKKVIHHYDTSNSQLLENFVRSIAQDSE---------GRFWIGTFGGGVGIYTPDMQLVR---- 528 (781)
T ss_dssp EET-TEEEEEES---SSSSCCEEECTTTSSCSCSCEEEEEECTT---------CCEEEEESSSCEEEECTTCCEEE----
T ss_pred EEC-CceEEEeC---CCCeEEecccCcccccccceeEEEEEcCC---------CCEEEEEcCCCEEEEeCCCCeEE----
Confidence 998 55765543 233332322211 1234555554332 34455555444666655432211
Q ss_pred eeeeeecc-ccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeecc--c-cCceEEEEE
Q 001391 512 FTFTWSAG-IERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSS--C-FGARIMCLD 587 (1088)
Q Consensus 512 ~~~~~~~~-~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~--~-h~~~It~l~ 587 (1088)
.+..... ....+.. .+...+|.+.++.. +|.+..||...... . .+.. + ....|.++.
T Consensus 529 -~~~~~~~l~~~~i~~--i~~d~~g~lWi~T~-~Glv~~~d~~~~~~------------~---~~~~~~gl~~~~i~~i~ 589 (781)
T 3v9f_A 529 -KFNQYEGFCSNTINQ--IYRSSKGQMWLATG-EGLVCFPSARNFDY------------Q---VFQRKEGLPNTHIRAIS 589 (781)
T ss_dssp -EECTTTTCSCSCEEE--EEECTTSCEEEEET-TEEEEESCTTTCCC------------E---EECGGGTCSCCCCCEEE
T ss_pred -EccCCCCCCCCeeEE--EEECCCCCEEEEEC-CCceEEECCCCCcE------------E---EccccCCCCCceEEEEE
Confidence 0000000 1111222 23456777776654 67657787653321 0 1111 1 123477887
Q ss_pred eeeCCCEEEEEcCCCcEEEEeCCc
Q 001391 588 ASFEDEVLFCGDLRGNLVLFPLLR 611 (1088)
Q Consensus 588 ~spdg~~LatGs~dg~I~Iw~~~~ 611 (1088)
..++|++.+.+ .+| |..|+..+
T Consensus 590 ~d~~g~lW~~t-~~G-l~~~~~~~ 611 (781)
T 3v9f_A 590 EDKNGNIWAST-NTG-ISCYITSK 611 (781)
T ss_dssp ECSSSCEEEEC-SSC-EEEEETTT
T ss_pred ECCCCCEEEEc-CCc-eEEEECCC
Confidence 77888877554 455 77777654
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.75 E-value=5.1e-06 Score=91.05 Aligned_cols=227 Identities=11% Similarity=0.024 Sum_probs=141.0
Q ss_pred eEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC
Q 001391 68 LHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1088)
Q Consensus 68 V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d 146 (1088)
..+..|+ ++++ .++.+. .++.|..|+..... . ..+ .....+.+++++| +
T Consensus 15 ~Egp~w~-------~~~~---~l~~~d~~~~~i~~~d~~~~~-------------~---~~~-~~~~~~~~i~~~~---d 64 (297)
T 3g4e_A 15 GESPVWE-------EVSN---SLLFVDIPAKKVCRWDSFTKQ-------------V---QRV-TMDAPVSSVALRQ---S 64 (297)
T ss_dssp EEEEEEE-------TTTT---EEEEEETTTTEEEEEETTTCC-------------E---EEE-ECSSCEEEEEEBT---T
T ss_pred ccCCeEE-------CCCC---EEEEEECCCCEEEEEECCCCc-------------E---EEE-eCCCceEEEEECC---C
Confidence 4677888 5432 444444 37899999987432 1 111 2346799999999 9
Q ss_pred CCEEEEEEcCCcEEEEEcCCCceEEEeccC---CceeEEEEeeecCCCCCcEEEEEecC---------CeEEEEEeccCc
Q 001391 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSP---ERCLLYSMKLWGDNLEALRIASGTIY---------NEIIVWKVDWEH 214 (1088)
Q Consensus 147 ~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~---~~~~~~s~~~~~~s~~~~~l~sg~~d---------g~I~vwd~~~~~ 214 (1088)
++++++ . ++.|.+||..+++........ .......+.+ ++++.++++.... ..-.+|.+..
T Consensus 65 G~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~---d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~-- 137 (297)
T 3g4e_A 65 GGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKV---DPAGRYFAGTMAEETAPAVLERHQGALYSLFP-- 137 (297)
T ss_dssp SSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEE---CTTSCEEEEEEECCSBTTBCCTTCEEEEEECT--
T ss_pred CCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEE---CCCCCEEEecCCcccccccccCCCcEEEEEEC--
Confidence 985544 4 678999999887654322211 1223444544 5677765543221 2345555540
Q ss_pred cccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEE-EEEECCCcEEEEEcC--CCccc
Q 001391 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL-VSVSDDRSARIWEVR--AEYWK 291 (1088)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l-~s~s~Dg~v~iWd~~--~~~~~ 291 (1088)
.+. +..+..+......++|+|+++.+ ++.+.++.|..|++. ++...
T Consensus 138 ------------------------------~g~-~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~ 186 (297)
T 3g4e_A 138 ------------------------------DHH-VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQIS 186 (297)
T ss_dssp ------------------------------TSC-EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEE
T ss_pred ------------------------------CCC-EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCccc
Confidence 111 22223334557899999999876 555667899999974 33210
Q ss_pred CCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEc-CCCCEEEEEe
Q 001391 292 DSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYD-SLSSLLVTAG 367 (1088)
Q Consensus 292 ~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~-~dg~~l~tg~ 367 (1088)
..+.+. .+..+...+..+++. +.+.++....+.|.+||. +|+.+..+..+.. .+++++|. |+++.|+.++
T Consensus 187 ---~~~~~~--~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~-~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 187 ---NRRSVY--KLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVD-KTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp ---EEEEEE--ECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSS-BEEEEEEESGGGCEEEEEE
T ss_pred ---CcEEEE--ECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCC-CceEEEEeCCCCCEEEEEc
Confidence 001111 223344567888887 567777777888999999 5999888887755 59999998 8887665554
Q ss_pred C
Q 001391 368 F 368 (1088)
Q Consensus 368 ~ 368 (1088)
.
T Consensus 261 ~ 261 (297)
T 3g4e_A 261 A 261 (297)
T ss_dssp B
T ss_pred C
Confidence 3
No 217
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.72 E-value=3.3e-07 Score=103.20 Aligned_cols=172 Identities=14% Similarity=0.052 Sum_probs=122.4
Q ss_pred eeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCe-----------eEEEEeeeCCcceEEEEecccccccCCCccce
Q 001391 19 EISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGT-----------LIRPFQVFHGIRLHGISCNFINCTEGSVSTRV 87 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~-----------~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~ 87 (1088)
++..++++ +. +.++++|+...++||++++.+ ...... ... |..++|. .
T Consensus 39 ~~nlLais--~~----~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~--lp~-V~~l~fd-------~----- 97 (388)
T 1xip_A 39 SLQNLDIS--NS----KSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE--IPD-VIFVCFH-------G----- 97 (388)
T ss_dssp CCBCEEEE--TT----TTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE--CTT-EEEEEEE-------T-----
T ss_pred cccEEEEc--CC----CCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee--CCC-eeEEEEC-------C-----
Confidence 69999999 88 889999997788889976433 112222 232 8999982 2
Q ss_pred eeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCC
Q 001391 88 TFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (1088)
Q Consensus 88 ~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~ 167 (1088)
..|+++.++.|++||+.... .......|...|.++.+.+ . .++++..||.|.+||+.++
T Consensus 98 -~~L~v~~~~~l~v~dv~sl~---------------~~~~~~~~~~~v~~i~~~~---p--~~av~~~dG~L~v~dl~~~ 156 (388)
T 1xip_A 98 -DQVLVSTRNALYSLDLEELS---------------EFRTVTSFEKPVFQLKNVN---N--TLVILNSVNDLSALDLRTK 156 (388)
T ss_dssp -TEEEEEESSEEEEEESSSTT---------------CEEEEEECSSCEEEEEECS---S--EEEEEETTSEEEEEETTTC
T ss_pred -CEEEEEcCCcEEEEEchhhh---------------ccCccceeecceeeEEecC---C--CEEEEECCCCEEEEEccCC
Confidence 34555588999999998532 2233445667788888776 3 3888999999999999988
Q ss_pred ceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccccee
Q 001391 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1088)
Q Consensus 168 ~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 247 (1088)
.... +. ..+.++++ +++| ++.|..||.+++|+.. ...
T Consensus 157 ~~~~-~~----~~Vs~v~W---SpkG--~~vg~~dg~i~~~~~~---------------------------------~~~ 193 (388)
T 1xip_A 157 STKQ-LA----QNVTSFDV---TNSQ--LAVLLKDRSFQSFAWR---------------------------------NGE 193 (388)
T ss_dssp CEEE-EE----ESEEEEEE---CSSE--EEEEETTSCEEEEEEE---------------------------------TTE
T ss_pred cccc-cc----CCceEEEE---cCCc--eEEEEcCCcEEEEcCC---------------------------------Ccc
Confidence 7643 22 23445554 5777 6789999999999887 222
Q ss_pred e--eEEE------e---CCCCCEEEEEEcCCCCEEEEEE
Q 001391 248 N--LFRL------V---GHEGSIFRIEWSSCGSKLVSVS 275 (1088)
Q Consensus 248 ~--~~~~------~---gh~~~V~~v~~sp~g~~l~s~s 275 (1088)
. ...+ . +|...|.+|.|.+++.++++-.
T Consensus 194 ~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 194 MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred ccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 2 3334 2 4789999999999998887643
No 218
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.70 E-value=0.0027 Score=81.84 Aligned_cols=508 Identities=13% Similarity=0.088 Sum_probs=249.5
Q ss_pred eEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccce
Q 001391 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSL 124 (1088)
Q Consensus 45 ~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~ 124 (1088)
.|++.+...++.+.......+..|...+.. +. .++++. ++.+.+++++... ++.
T Consensus 493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n--------~~----~vvva~-g~~l~~fel~~~~-------------L~~ 546 (1158)
T 3ei3_A 493 SVRLVSQEPKALVSEWKEPQAKNISVASCN--------SS----QVVVAV-GRALYYLQIHPQE-------------LRQ 546 (1158)
T ss_dssp CEEEEESSSCCEEEEECCTTCCCCCEEEEC--------SS----EEEEEE-TTEEEEEEEETTE-------------EEE
T ss_pred EEEEEECCCCeEEEEEECCCCCEEEEEEeC--------CC----EEEEEE-CCEEEEEEeeCCc-------------eee
Confidence 456666555555555554444456655554 22 444444 5788888877421 222
Q ss_pred eeeccCCCCcEEEEEEecccC---CCCEEEEEEc-CCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEe
Q 001391 125 VQSLPRLSHWVFDVCFLKVCN---GNRSLAIGCS-DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (1088)
Q Consensus 125 ~~~l~~h~~~I~~v~f~p~~~---d~~~lasgs~-Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~ 200 (1088)
.... .-.+.|.|+++.|... .++++|+|.. |++|+|+++.+.+.+....-+......++.+... ....+|..|-
T Consensus 547 ~~~~-~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~-~~~~~L~igl 624 (1158)
T 3ei3_A 547 ISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTF-ESSHYLLCAL 624 (1158)
T ss_dssp EEEE-ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEE-TTEEEEEEEE
T ss_pred eccc-CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEe-CCCcEEEEEe
Confidence 2222 2346799999987321 2468999996 9999999999877665443322223334433322 2346788999
Q ss_pred cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcE
Q 001391 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280 (1088)
Q Consensus 201 ~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v 280 (1088)
.||.+..+.+... .+. + ... ...+-| ..++.=..+...+..-+-+..++..
T Consensus 625 ~dG~l~~~~~d~~--tg~------------------l-------~d~-r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~ 675 (1158)
T 3ei3_A 625 GDGALFYFGLNIE--TGL------------------L-------SDR-KKVTLG-TQPTVLRTFRSLSTTNVFACSDRPT 675 (1158)
T ss_dssp TTSEEEEEEECTT--TCC------------------E-------EEE-EEEECC-SSCCEEEEEESSSCEEEEEESSSCE
T ss_pred CCCeEEEEEEcCC--CCc------------------c-------ccc-eeEEcC-CCceEEEEEeeCCceeEEEECCCCE
Confidence 9999988776510 000 0 000 011222 2233333333333333333334444
Q ss_pred EEEEcCCCcccCCCCceeeeceeeeccCcce-EEEEEC----CCEEEEEeCCCcEEEEcCC-Cc--eeEEEcccCCCCeE
Q 001391 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARV-WDCCLT----DSFIITAGEDCTCRVWGSD-GK--QLKMIKEHIGRGIW 352 (1088)
Q Consensus 281 ~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I-~~v~~~----~~~l~sg~~Dg~i~vWd~~-~~--~~~~~~~h~~~~V~ 352 (1088)
.++.-+. +. . +. .+ . -..+ ..+.|+ ++-++... ++.++|..++ -+ .++++.- +..+.
T Consensus 676 liy~~~~-~l------~-~s--~l-~-~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL--~~Tpr 740 (1158)
T 3ei3_A 676 VIYSSNH-KL------V-FS--NV-N-LKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPL--YESPR 740 (1158)
T ss_dssp EEEESSS-SE------E-EE--EB-S-SSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEEC--SSEEE
T ss_pred EEEEcCC-ce------E-Ee--cc-C-hHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeC--CCCce
Confidence 4444322 11 0 10 00 0 0122 333454 34455444 4568888872 22 2333332 23688
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcCCCCCC--c----c-------cC-------CccccccCCCcce--EEeeeCCCcc
Q 001391 353 RCLYDSLSSLLVTAGFDSAIKVHQFQAFLPG--S----L-------ES-------HPEAKEFNGRTEI--FSIKIPNFSE 410 (1088)
Q Consensus 353 ~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~--~----~-------~~-------~~~~~~~~~~~~~--~~~~~~~~~~ 410 (1088)
.++++|+.+.++.+..+. ..++..+.... . . .+ ......|...... +.+-.|....
T Consensus 741 ri~y~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~ 818 (1158)
T 3ei3_A 741 KICYQEVSQCFGVLSSRI--EVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFE 818 (1158)
T ss_dssp EEEEEGGGTEEEEEEEEE--EEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCC
T ss_pred EEEEcCCCCEEEEEEEec--cccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCe
Confidence 999999888666554332 11222110000 0 0 00 0000011110011 1111222222
Q ss_pred ceeecc-CCCCceEEEE---eccC--CeEEEEe----------cCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCC
Q 001391 411 QIRLTD-SKSEYVRCLH---LTSE--DTLYIAT----------NHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLS 474 (1088)
Q Consensus 411 ~~~~~~-~~~~~V~~l~---~s~~--~~ll~~t----------~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 474 (1088)
.+.... ..++.+.+++ |..+ ..++++| ..|+|+.+++.+ .+.+.+......+++.++.-..
T Consensus 819 ~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~---~kL~lv~~~~v~g~v~al~~~~ 895 (1158)
T 3ei3_A 819 VLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSD---GKLQTVAEKEVKGAVYSMVEFN 895 (1158)
T ss_dssp EEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEET---TEEEEEEEEEESSCEEEEEEET
T ss_pred EEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEEC---CEEEEEEEEEcCCcCEEEeeeC
Confidence 111111 1234455554 3332 3566666 457788777752 3444455555566777776532
Q ss_pred CCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCC
Q 001391 475 NEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCD 554 (1088)
Q Consensus 475 ~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~ 554 (1088)
..+++|- ...+++|++...+... ........ +.. ......+++++.|+.-..+.++....
T Consensus 896 ----------g~Lla~i-g~~l~vy~l~~~~~L~---~~~~~~~~----i~~--~~l~~~~~~I~vgD~~~Sv~~~~y~~ 955 (1158)
T 3ei3_A 896 ----------GKLLASI-NSTVRLYEWTTEKELR---TECNHYNN----IMA--LYLKTKGDFILVGDLMRSVLLLAYKP 955 (1158)
T ss_dssp ----------TEEEEEE-TTEEEEEEECTTSCEE---EEEEECCC----SCE--EEEEEETTEEEEEESSBCEEEEEEET
T ss_pred ----------CEEEEEc-CCEEEEEECCCCceEE---EEeecccc----EEE--EEEeccCCEEEEEEhhheEEEEEEEc
Confidence 2444443 3689999997643211 11111100 111 11222467888888888777766542
Q ss_pred CCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceeeccc
Q 001391 555 PFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGA 634 (1088)
Q Consensus 555 ~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~~g~ 634 (1088)
.. . .+...+ ...+...++++.+-.++ .++.|+.+|++.++..+..... ....+++...+.| |
T Consensus 956 ~~--~--------~L~~~a--~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~~~~~---~~~~~~L~~~~~f--h 1017 (1158)
T 3ei3_A 956 ME--G--------NFEEIA--RDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDSAATT---DEERQHLQEVGLF--H 1017 (1158)
T ss_dssp TT--T--------EEEEEE--ECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECTTCCS---TTGGGBEEEEEEE--E
T ss_pred CC--C--------eEEEEE--eecccccEEEEEEEccC-cEEEEcCCCcEEEEecCCCCCC---ccccceeeeEEEE--e
Confidence 21 1 222222 12345678898887665 6678999999999998763221 1112344444433 4
Q ss_pred ccccceeEEEEEeccC---------CceEEEEecCCCeEEEEE
Q 001391 635 HGISTVSTLSVAKLRS---------NQTEIRSTGGDGCICYLE 668 (1088)
Q Consensus 635 hg~~~Vtsv~~~~~~~---------~~~~l~t~g~Dg~i~iw~ 668 (1088)
-| +.|+++.-..... ....++-++.||.|-+.-
T Consensus 1018 lG-~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~ 1059 (1158)
T 3ei3_A 1018 LG-EFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVT 1059 (1158)
T ss_dssp CS-SCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEE
T ss_pred CC-CcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEE
Confidence 44 6788875321111 123466677788776553
No 219
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.70 E-value=1.3e-05 Score=90.98 Aligned_cols=285 Identities=8% Similarity=-0.002 Sum_probs=167.8
Q ss_pred CCCCceEEecCCCcee----------------eee-EEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeee
Q 001391 2 GKKDLSEWRLDVGQYL----------------GEI-SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVF 63 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~~~----------------~~V-~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~ 63 (1088)
.++.|..+|..+|+.. ..+ ..+... +..|.+++ ++.|..+|.++|+.+..+...
T Consensus 61 ~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~ 132 (376)
T 3q7m_A 61 RAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVS--------GGHVYIGSEKAQVYALNTSDGTVAWQTKVA 132 (376)
T ss_dssp TTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEE--------TTEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred CCCeEEEEEccCCceeeeecCccccccccccCcccccCceEe--------CCEEEEEcCCCEEEEEECCCCCEEEEEeCC
Confidence 3567888888888721 112 222333 34555555 799999999999998877753
Q ss_pred CCcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcE-----EEE
Q 001391 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWV-----FDV 138 (1088)
Q Consensus 64 ~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I-----~~v 138 (1088)
.. ......+ .++ .+++...++.+..+|..+.. .+.......... ...
T Consensus 133 ~~-~~~~p~~--------~~~----~v~v~~~~g~l~~~d~~tG~---------------~~W~~~~~~~~~~~~~~~~~ 184 (376)
T 3q7m_A 133 GE-ALSRPVV--------SDG----LVLIHTSNGQLQALNEADGA---------------VKWTVNLDMPSLSLRGESAP 184 (376)
T ss_dssp SC-CCSCCEE--------ETT----EEEEECTTSEEEEEETTTCC---------------EEEEEECCC-----CCCCCC
T ss_pred Cc-eEcCCEE--------ECC----EEEEEcCCCeEEEEECCCCc---------------EEEEEeCCCCceeecCCCCc
Confidence 32 1111122 233 56666678999999987533 222111111100 111
Q ss_pred EEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeE---EEEe-e-ecCCCCCcEEEEEecCCeEEEEEeccC
Q 001391 139 CFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLL---YSMK-L-WGDNLEALRIASGTIYNEIIVWKVDWE 213 (1088)
Q Consensus 139 ~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~---~s~~-~-~~~s~~~~~l~sg~~dg~I~vwd~~~~ 213 (1088)
.. .+..++.+..++.+..+|..+++.+.+......... ..+. . ......+..++.++.++.+..+|..
T Consensus 185 ~~-----~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~-- 257 (376)
T 3q7m_A 185 TT-----AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLR-- 257 (376)
T ss_dssp EE-----ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETT--
T ss_pred EE-----ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECC--
Confidence 11 234677788899999999999988766553211000 0000 0 0000124567778889999999987
Q ss_pred ccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCC
Q 001391 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS 293 (1088)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~ 293 (1088)
+++.+..... .....+.. ++..+..++.++.+..+|..+++.
T Consensus 258 -------------------------------tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~--- 299 (376)
T 3q7m_A 258 -------------------------------SGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVT--- 299 (376)
T ss_dssp -------------------------------TCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCE---
T ss_pred -------------------------------CCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcE---
Confidence 3444433321 22333333 466788888999999999988643
Q ss_pred CCceeeeceeee-ccCcceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCC
Q 001391 294 DSIEEVGSSVLY-GHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSA 371 (1088)
Q Consensus 294 ~~~~~i~~~~~~-~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~ 371 (1088)
+. ... .....+......+..|+.++.+|.+.++|. +|+.+........ .+.+.... .+..|+.++.||.
T Consensus 300 -----~w--~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~-~~~~~~~~-~~~~l~v~~~~G~ 370 (376)
T 3q7m_A 300 -----LW--TQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSS-GFQTEPVA-ADGKLLIQAKDGT 370 (376)
T ss_dssp -----EE--EECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCTT-CBCSCCEE-ETTEEEEEBTTSC
T ss_pred -----EE--eecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEecCCC-cceeCCEE-ECCEEEEEeCCCE
Confidence 11 111 111222333345788999999999999998 8888877765333 23322111 2456888999999
Q ss_pred EEEEE
Q 001391 372 IKVHQ 376 (1088)
Q Consensus 372 I~iwd 376 (1088)
+..|+
T Consensus 371 l~~~~ 375 (376)
T 3q7m_A 371 VYSIT 375 (376)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99886
No 220
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.67 E-value=3.5e-06 Score=103.67 Aligned_cols=303 Identities=8% Similarity=-0.030 Sum_probs=157.0
Q ss_pred CCEEEEEe-CCeEEEEECCCCeeEEEEeee-CCcceEEEEecccccccCCCccceeeEEEEEC------CCEEEEEEecc
Q 001391 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFEVALFG------EKRVKLFELNF 106 (1088)
Q Consensus 35 ~~~laag~-d~~I~vwd~~tg~~~~~~~~~-~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g------d~~v~iw~l~~ 106 (1088)
+..|++++ ++.|..+|.++|+++.++... +......+..+|.- .++ .+++..+ ++.|..||..+
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v----~~g----~v~vg~~~~~~~~~g~v~a~D~~t 192 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRV----VNG----KVVIGNGGAEFGVRGYVTAYDAET 192 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEE----ETT----EEEECCBCTTTCCBCEEEEEETTT
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEE----ECC----EEEEEeCCCccCCCCEEEEEECCC
Confidence 34666666 899999999999999888763 22112222223210 133 3433322 46788888775
Q ss_pred CCCC----CCCCCCcccccccee----eec--------cCCCCcEEEEEEecccCCCCEEEEEEcCCc------------
Q 001391 107 ELSP----NSQYQPETCVNLSLV----QSL--------PRLSHWVFDVCFLKVCNGNRSLAIGCSDNS------------ 158 (1088)
Q Consensus 107 ~~~~----~~~~~~~~~~~~~~~----~~l--------~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~------------ 158 (1088)
.... .....|........+ ... .++......+++.| +..+|+.+..++.
T Consensus 193 G~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~---~~~~vy~~~~~g~~w~~~~~~~~~g 269 (689)
T 1yiq_A 193 GKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP---ELNLLYIGVGNGSLWDPKWRSQAKG 269 (689)
T ss_dssp CCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET---TTTEEEEECCCEESSCHHHHHTTCS
T ss_pred CcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC---CCCEEEEeCCCCCccccCCCCCCCC
Confidence 4300 000000000000000 000 01111113678888 8888998887763
Q ss_pred -------EEEEEcCCCceEEEeccCC----------ceeEEEEeeecCCCCCc---EEEEEecCCeEEEEEeccCccccC
Q 001391 159 -------IRVWDISNSSIILEVHSPE----------RCLLYSMKLWGDNLEAL---RIASGTIYNEIIVWKVDWEHVAPL 218 (1088)
Q Consensus 159 -------V~iWd~~~~~~~~~~~~~~----------~~~~~s~~~~~~s~~~~---~l~sg~~dg~I~vwd~~~~~~~~~ 218 (1088)
|..||..+++.+-.++... ...+..+. .++. .++.++.+|.++++|..+++....
T Consensus 270 d~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~-----~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~ 344 (689)
T 1yiq_A 270 DNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELP-----IDGKPRKVLMQAPKNGFFYVIDRATGELLSA 344 (689)
T ss_dssp CCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE-----ETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred CceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeec-----cCCcEEEEEEEECCCCeEEEEECCCCCEecc
Confidence 9999999999987765321 11122221 1333 788899999999999986664321
Q ss_pred CC-CCCCc--cCCCCCCCCceeEecc----cccceeeeEEEe---CCCCCEEEEEEcCCCCEEEEEEC------------
Q 001391 219 LN-SPEGN--HAHGSSSDFKCFKLQD----QQHTAVNLFRLV---GHEGSIFRIEWSSCGSKLVSVSD------------ 276 (1088)
Q Consensus 219 ~~-~~~~~--s~~~~~~~~~~~~~~~----~~~~~~~~~~~~---gh~~~V~~v~~sp~g~~l~s~s~------------ 276 (1088)
.. ..... ..+... ..-+..-. .. .......+. |.. .-..++|+|+.+.+++...
T Consensus 345 ~~~~~~~w~~~~~~~~--~~pi~~~~~~~~~~-~~~~~~~~p~~~Gg~-~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~ 420 (689)
T 1yiq_A 345 KGIVPQSWTKGMDMKT--GRPILDEENAAYWK-NGKRNLVTPAFWGAH-DWQPMSYNPDTGLVYIPAHIMSAYYEHIPEA 420 (689)
T ss_dssp EESSCCSSEEEEETTT--TEEEECHHHHCTTT-SSSCEEESSCTTCSS-CSSCCEEETTTTEEEEEEEECCEEEECCSSC
T ss_pred ccccccccccccCccC--CCcccchhhccccC-CCCeeEeCCCccccc-CCCcceECCCCCEEEEeccccceeeeecccc
Confidence 10 00000 000000 00000000 00 000011111 111 1123678887777666532
Q ss_pred ---------------------------------CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceE--EEEECCCEE
Q 001391 277 ---------------------------------DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW--DCCLTDSFI 321 (1088)
Q Consensus 277 ---------------------------------Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~--~v~~~~~~l 321 (1088)
++.|+.||+.+++. +- ....+ ..++ .+.-.+.++
T Consensus 421 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~--------~W--~~~~~-~~~~~g~~~tagglv 489 (689)
T 1yiq_A 421 PKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQA--------AW--EVPYV-TIFNGGTLSTAGNLV 489 (689)
T ss_dssp CCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEE--------EE--EEEES-SSCCCCEEEETTTEE
T ss_pred ccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCe--------Ee--EccCC-CCccCccceECCCEE
Confidence 36788888887632 21 22212 2222 222347899
Q ss_pred EEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC-EEEEEeC
Q 001391 322 ITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAGF 368 (1088)
Q Consensus 322 ~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~-~l~tg~~ 368 (1088)
+.|+.||.++.||. +|+.+.+++...+-...-+.|..+|+ ++++.+.
T Consensus 490 f~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 490 FEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred EEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence 99999999999999 89999988765442123466677776 4444433
No 221
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.66 E-value=1.1e-06 Score=107.99 Aligned_cols=298 Identities=9% Similarity=0.004 Sum_probs=155.2
Q ss_pred CCEEEEEe-CCeEEEEECCCCeeEEEEeee-CCcceEEEEecccccccCCCccceeeEEEEEC------CCEEEEEEecc
Q 001391 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFEVALFG------EKRVKLFELNF 106 (1088)
Q Consensus 35 ~~~laag~-d~~I~vwd~~tg~~~~~~~~~-~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g------d~~v~iw~l~~ 106 (1088)
+..|++++ ++.|..+|..+|+++.++... ....-..+..+|. ..++ .+++..+ ++.|+.||..+
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~----v~~~----~v~v~~~~~~~~~~g~v~a~D~~t 199 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPR----VFKG----KVIIGNGGAEYGVRGYITAYDAET 199 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCE----EETT----EEEECCBCTTTCCBCEEEEEETTT
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcE----EECC----EEEEEecccccCCCCEEEEEECCC
Confidence 34666666 799999999999999988864 2111011111211 0122 3444332 57888888775
Q ss_pred CCCC-------CCCCCCc------ccc-c----cceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCC-----------
Q 001391 107 ELSP-------NSQYQPE------TCV-N----LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN----------- 157 (1088)
Q Consensus 107 ~~~~-------~~~~~~~------~~~-~----~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg----------- 157 (1088)
.... .....+- ... . .... ...+.......++++| ++.+|+.+..++
T Consensus 200 G~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~-~~~~g~~~w~~~~~d~---~~~~vy~~~~~~~~w~~~~~~~~ 275 (677)
T 1kb0_A 200 GERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWW-EAGGGGTMWDSMTFDA---ELNTMYVGTGNGSPWSHKVRSPK 275 (677)
T ss_dssp CCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHH-HHCEECCCCSCEEEET---TTTEEEEECCCEESSCHHHHSTT
T ss_pred CcEEEEeccCCCCccccccccccccccccccccCcee-EeCCCcccccceeEcC---CCCEEEEECCCCccccCCCCCcc
Confidence 4300 0000000 000 0 0000 0001111223678888 888888877654
Q ss_pred --------cEEEEEcCCCceEEEeccCC----------ceeEEEEeeecCCCCC---cEEEEEecCCeEEEEEeccCccc
Q 001391 158 --------SIRVWDISNSSIILEVHSPE----------RCLLYSMKLWGDNLEA---LRIASGTIYNEIIVWKVDWEHVA 216 (1088)
Q Consensus 158 --------~V~iWd~~~~~~~~~~~~~~----------~~~~~s~~~~~~s~~~---~~l~sg~~dg~I~vwd~~~~~~~ 216 (1088)
+|..+|..+++.+-.++... ...+... ..++ ..++.++.+|.++++|..+++..
T Consensus 276 ~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~-----~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l 350 (677)
T 1kb0_A 276 GGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADI-----KIAGKPRKVILHAPKNGFFFVLDRTNGKFI 350 (677)
T ss_dssp CCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEE-----EETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred CCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEec-----ccCCcEeeEEEEECCCCEEEEEECCCCCEe
Confidence 59999999999887765321 1122221 1245 67889999999999999865543
Q ss_pred cCCC-CCCC--ccCCCCCCCCceeEecccccceeeeEEEe---CCCCCEEEEEEcCCCCEEEEEECC-------------
Q 001391 217 PLLN-SPEG--NHAHGSSSDFKCFKLQDQQHTAVNLFRLV---GHEGSIFRIEWSSCGSKLVSVSDD------------- 277 (1088)
Q Consensus 217 ~~~~-~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~~---gh~~~V~~v~~sp~g~~l~s~s~D------------- 277 (1088)
-... .... ...+.. ...+..-...........+. |...+ ..++++|++.++++...+
T Consensus 351 ~~~~~~~~~~~~~~d~~---g~~~~~~~~~~~~~~~~~~P~~~G~~~w-~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~ 426 (677)
T 1kb0_A 351 SAKNFVPVNWASGYDKH---GKPIGIAAARDGSKPQDAVPGPYGAHNW-HPMSFNPQTGLVYLPAQNVPVNLMDDKKWEF 426 (677)
T ss_dssp EEEESSCCSSEEEECTT---SCEEECGGGGCTTSCEECSSCTTCSSCS-SCCEEETTTTEEEEEEEECCCEEEECTTCCT
T ss_pred ccccccccCcccccCCC---CceeeccccCcCCCccEECcCcccccCC-CCceEcCCCCEEEEeChhcceeeeccccccc
Confidence 2110 0000 000000 00000000000000000000 11111 257888888877765432
Q ss_pred ------------------------------CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEE--EECCCEEEEEe
Q 001391 278 ------------------------------RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDC--CLTDSFIITAG 325 (1088)
Q Consensus 278 ------------------------------g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v--~~~~~~l~sg~ 325 (1088)
+.|..||+.+++. +- .. .+..+++.. ...+.+++.++
T Consensus 427 g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~--------~W--~~-~~~~~~~~g~~~~~g~~v~~g~ 495 (677)
T 1kb0_A 427 NQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA--------AW--SV-EHVSPWNGGTLTTAGNVVFQGT 495 (677)
T ss_dssp TCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE--------EE--EE-EESSSCCCCEEEETTTEEEEEC
T ss_pred ccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE--------Ee--ec-CCCCCCcCcceEeCCCEEEEEC
Confidence 6788889888632 21 11 122223332 23377889999
Q ss_pred CCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEE
Q 001391 326 EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLV 364 (1088)
Q Consensus 326 ~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~ 364 (1088)
.||.+++||. +|+.+..+....+-...-+.+..+|+.++
T Consensus 496 ~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 496 ADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV 535 (677)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEE
Confidence 9999999999 89999998755432233456667876443
No 222
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.65 E-value=4.7e-06 Score=91.33 Aligned_cols=201 Identities=11% Similarity=0.059 Sum_probs=133.7
Q ss_pred CCCceEEecCCCce-----eeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeee---CCcceEEEEec
Q 001391 3 KKDLSEWRLDVGQY-----LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVF---HGIRLHGISCN 74 (1088)
Q Consensus 3 d~~i~iWdl~~g~~-----~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~---~~~~V~~i~~s 74 (1088)
++.|..||..+++. ...+.+++++ |+ ++++++ .+..|.+||..+++........ ...++.+++++
T Consensus 34 ~~~i~~~d~~~~~~~~~~~~~~~~~i~~~--~d----G~l~v~-~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d 106 (297)
T 3g4e_A 34 AKKVCRWDSFTKQVQRVTMDAPVSSVALR--QS----GGYVAT-IGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVD 106 (297)
T ss_dssp TTEEEEEETTTCCEEEEECSSCEEEEEEB--TT----SSEEEE-ETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEEC
T ss_pred CCEEEEEECCCCcEEEEeCCCceEEEEEC--CC----CCEEEE-ECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEEC
Confidence 56788999888762 3568899999 98 775554 5778999999988754333321 23468889998
Q ss_pred ccccccCCCccceeeEEEEECC---------CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccC
Q 001391 75 FINCTEGSVSTRVTFEVALFGE---------KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (1088)
Q Consensus 75 ~~~~~~~~d~~~~~~~la~~gd---------~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~ 145 (1088)
|+|+ .++...+. ..-.||.+.... +.. .+..+-.....++|+|
T Consensus 107 -------~dG~---l~~~~~~~~~~~~~~~~~~~~l~~~d~~g--------------~~~-~~~~~~~~pngi~~sp--- 158 (297)
T 3g4e_A 107 -------PAGR---YFAGTMAEETAPAVLERHQGALYSLFPDH--------------HVK-KYFDQVDISNGLDWSL--- 158 (297)
T ss_dssp -------TTSC---EEEEEEECCSBTTBCCTTCEEEEEECTTS--------------CEE-EEEEEESBEEEEEECT---
T ss_pred -------CCCC---EEEecCCcccccccccCCCcEEEEEECCC--------------CEE-EEeeccccccceEEcC---
Confidence 7872 44444332 346788776422 111 1122334568999999
Q ss_pred CCCEEE-EEEcCCcEEEEEc--CCCceE-----EEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCcccc
Q 001391 146 GNRSLA-IGCSDNSIRVWDI--SNSSII-----LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217 (1088)
Q Consensus 146 d~~~la-sgs~Dg~V~iWd~--~~~~~~-----~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~ 217 (1088)
+++.|+ +.+.++.|.+|++ .++... ..+.. .......+++ ++++.+.++....+.|.+||..
T Consensus 159 dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~-~~~~p~g~~~---d~~G~lwva~~~~~~v~~~d~~------ 228 (297)
T 3g4e_A 159 DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEK-EEQIPDGMCI---DAEGKLWVACYNGGRVIRLDPV------ 228 (297)
T ss_dssp TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCG-GGCEEEEEEE---BTTSCEEEEEETTTEEEEECTT------
T ss_pred CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCC-CCCCCCeeEE---CCCCCEEEEEcCCCEEEEEcCC------
Confidence 998664 4556789999997 455432 11111 1123344554 5678777777777889999987
Q ss_pred CCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEc-CCCCEEEEEE
Q 001391 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS-SCGSKLVSVS 275 (1088)
Q Consensus 218 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~s-p~g~~l~s~s 275 (1088)
+++.+..+..+...+++++|. |+++.|..++
T Consensus 229 ---------------------------tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 229 ---------------------------TGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp ---------------------------TCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred ---------------------------CceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 567777777777889999998 8887765444
No 223
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.63 E-value=3.9e-06 Score=92.40 Aligned_cols=228 Identities=12% Similarity=0.009 Sum_probs=136.9
Q ss_pred ceEEEEecccccccCCCccceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~ 145 (1088)
...+..|+ ++++ .++.+.. ++.|..|+.. .. ...+..+...+..+++++
T Consensus 46 ~~egp~~~-------~~g~---~l~~~d~~~~~i~~~~~~-g~----------------~~~~~~~~~~~~gl~~d~--- 95 (305)
T 3dr2_A 46 WSEGPAWW-------EAQR---TLVWSDLVGRRVLGWRED-GT----------------VDVLLDATAFTNGNAVDA--- 95 (305)
T ss_dssp SEEEEEEE-------GGGT---EEEEEETTTTEEEEEETT-SC----------------EEEEEESCSCEEEEEECT---
T ss_pred CccCCeEe-------CCCC---EEEEEECCCCEEEEEeCC-CC----------------EEEEeCCCCccceeeECC---
Confidence 46888998 6762 3555543 6889889763 11 123334556789999999
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCceEEEeccCCce---eEEEEeeecCCCCCcEEEE----Eec-------------CCeE
Q 001391 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERC---LLYSMKLWGDNLEALRIAS----GTI-------------YNEI 205 (1088)
Q Consensus 146 d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~---~~~s~~~~~~s~~~~~l~s----g~~-------------dg~I 205 (1088)
+|+++++...++.|.+|+.. ++........... ....+.+ ++++.+.++ |+. .+.|
T Consensus 96 dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~---d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v 171 (305)
T 3dr2_A 96 QQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIV---ARDGAIWFTDPPFGLRKPSQGCPADPELAHHSV 171 (305)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEE---CTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEE
T ss_pred CCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEE---CCCCCEEEeCcCCCccccccccccccccCCCeE
Confidence 99877665556789999986 5432221111110 1112332 456766665 321 1334
Q ss_pred EEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC------Cc
Q 001391 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD------RS 279 (1088)
Q Consensus 206 ~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D------g~ 279 (1088)
..+|.. +++.. .+. .......++|+|+++.|+.+... +.
T Consensus 172 ~~~d~~---------------------------------~g~~~-~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~ 216 (305)
T 3dr2_A 172 YRLPPD---------------------------------GSPLQ-RMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVE 216 (305)
T ss_dssp EEECSS---------------------------------SCCCE-EEE-EESSEEEEEECTTSSEEEEEECCC---CCCE
T ss_pred EEEcCC---------------------------------CCcEE-EEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCE
Confidence 444443 12221 122 34567889999999987776654 68
Q ss_pred EEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEc
Q 001391 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYD 357 (1088)
Q Consensus 280 v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~ 357 (1088)
|+.|++..... .... ............+++. ++ |..+..+ .|.+|+.+++.+..+..+. .+.+++|.
T Consensus 217 i~~~~~~~~~l------~~~~-~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~~g~~~~~~~~~~--~~~~~~f~ 285 (305)
T 3dr2_A 217 ITAFAWRDGAL------HDRR-HFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDSDGQLLGHIPTPG--TASNCTFD 285 (305)
T ss_dssp EEEEEEETTEE------EEEE-EEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECTTSCEEEEEECSS--CCCEEEEC
T ss_pred EEEEEecCCCc------cCCe-EEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECCCCCEEEEEECCC--ceeEEEEe
Confidence 99999875321 1011 0111122334556776 44 5555545 4999999998888887665 38899999
Q ss_pred CCCCEEEEEeCCCCEEE
Q 001391 358 SLSSLLVTAGFDSAIKV 374 (1088)
Q Consensus 358 ~dg~~l~tg~~Dg~I~i 374 (1088)
++++.|..++.++.+++
T Consensus 286 ~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 286 QAQQRLFITGGPCLWML 302 (305)
T ss_dssp TTSCEEEEEETTEEEEE
T ss_pred CCCCEEEEEcCCeEEEE
Confidence 99988888877654443
No 224
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.63 E-value=3.9e-06 Score=94.20 Aligned_cols=275 Identities=9% Similarity=0.011 Sum_probs=149.7
Q ss_pred cceEEEEecccccccCCCccceeeEEEEEC---CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEec
Q 001391 66 IRLHGISCNFINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLK 142 (1088)
Q Consensus 66 ~~V~~i~~s~~~~~~~~d~~~~~~~la~~g---d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p 142 (1088)
....+++++ ++| .++++.. ++.++||.+.... ...|.. ......+|-..+..+++.+
T Consensus 17 ~~p~~va~~-------~~g----~~~v~~~~~~~~~~~l~~~~~g~--~~~~p~-------~~~~~~~~~~~p~gv~~d~ 76 (343)
T 2qe8_A 17 LAPGNITLT-------PDG----RLFLSLHQFYQPEMQVAELTQDG--LIPFPP-------QSGNAIITFDTVLGIKSDG 76 (343)
T ss_dssp SCEEEEEEC-------TTS----CEEEEECGGGCCSCSEEEEETTE--EEESCC-------CCSSCCCCCSCEEEEEECS
T ss_pred CCcceEEEC-------CCC----CEEEEeCCCCCCceEEEEECCCC--eecCCC-------cccCcccceeEeeEEEEcC
Confidence 368999999 787 5666642 3437788776211 000000 0011234667899999999
Q ss_pred ccCCCCEEEEEEc-----CCcEEEEEcCCCceEEEeccCC-----ceeEEEEeeecCCC-CCcEEEEEe---cCCeEEEE
Q 001391 143 VCNGNRSLAIGCS-----DNSIRVWDISNSSIILEVHSPE-----RCLLYSMKLWGDNL-EALRIASGT---IYNEIIVW 208 (1088)
Q Consensus 143 ~~~d~~~lasgs~-----Dg~V~iWd~~~~~~~~~~~~~~-----~~~~~s~~~~~~s~-~~~~l~sg~---~dg~I~vw 208 (1088)
++++.++-.. ++.|.+||+.+++.+..+..+. ......+++ ++ ++...++.. .++.|.+|
T Consensus 77 ---~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~v---d~~~g~~yvtd~~~~~~~~i~v~ 150 (343)
T 2qe8_A 77 ---NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAV---DLIHNFVYISDPAPDDKAALIRV 150 (343)
T ss_dssp ---SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEE---ETTTTEEEEEECCSGGGCEEEEE
T ss_pred ---CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEE---ecCCCEEEEEcCccCCCCeEEEE
Confidence 8876665433 5789999999998776665321 112234444 23 344455555 68899999
Q ss_pred EeccCccccCCCCCCCccCCCCCC--CCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 001391 209 KVDWEHVAPLLNSPEGNHAHGSSS--DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR 286 (1088)
Q Consensus 209 d~~~~~~~~~~~~~~~~s~~~~~~--~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~ 286 (1088)
|+.+.+............++.... ....+..... .+. + ..-...+..|+|+|+++.|+.+..++. ++|.+.
T Consensus 151 d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~--~g~-~---~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~ 223 (343)
T 2qe8_A 151 DLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQP--DGT-V---IRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIK 223 (343)
T ss_dssp ETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECT--TSC-E---ECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEE
T ss_pred ECCCCCEEEEecCCCcccccccceeECCEEEEeccC--CCc-e---eceecccceeEeccCCCEEEEEeCCCC-eEEEEE
Confidence 987544322111100000000000 0000000000 000 0 001134789999999998888877663 555554
Q ss_pred CCcccC-C-CCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC
Q 001391 287 AEYWKD-S-DSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS 361 (1088)
Q Consensus 287 ~~~~~~-~-~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~ 361 (1088)
...... . ...+....+...++......++++ +.++++...++.|.+||. +++..............++++.+++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~ 303 (343)
T 2qe8_A 224 SADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGY 303 (343)
T ss_dssp HHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSC
T ss_pred HHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCc
Confidence 311000 0 000101101222444455667887 678888888999999999 77644333322222588999999998
Q ss_pred EEEEEeCCCCEE
Q 001391 362 LLVTAGFDSAIK 373 (1088)
Q Consensus 362 ~l~tg~~Dg~I~ 373 (1088)
++++.+..+.+.
T Consensus 304 l~v~~~~~~~~~ 315 (343)
T 2qe8_A 304 LYFDCNQLHHSA 315 (343)
T ss_dssp EEEEECCGGGSG
T ss_pred EEEEeCcccccc
Confidence 888876554443
No 225
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.61 E-value=5.4e-05 Score=84.08 Aligned_cols=226 Identities=9% Similarity=-0.050 Sum_probs=137.1
Q ss_pred eEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC
Q 001391 68 LHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1088)
Q Consensus 68 V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d 146 (1088)
..+..|+ |+++ .++.+. .++.|..|+..... .. .+. +...|.+++++| +
T Consensus 51 ~egp~~~-------~~~~---~l~~~d~~~~~i~~~d~~~~~-------------~~---~~~-~~~~v~~i~~~~---d 100 (326)
T 2ghs_A 51 GEGPTFD-------PASG---TAWWFNILERELHELHLASGR-------------KT---VHA-LPFMGSALAKIS---D 100 (326)
T ss_dssp EEEEEEE-------TTTT---EEEEEEGGGTEEEEEETTTTE-------------EE---EEE-CSSCEEEEEEEE---T
T ss_pred CcCCeEe-------CCCC---EEEEEECCCCEEEEEECCCCc-------------EE---EEE-CCCcceEEEEeC---C
Confidence 4677888 6542 455544 37889999876422 11 111 245799999999 9
Q ss_pred CCEEEEEEcCCcEEEEEcCCCceEEEeccC---CceeEEEEeeecCCCCCcEEEEEecC----CeEEEEEeccCccccCC
Q 001391 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSP---ERCLLYSMKLWGDNLEALRIASGTIY----NEIIVWKVDWEHVAPLL 219 (1088)
Q Consensus 147 ~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~---~~~~~~s~~~~~~s~~~~~l~sg~~d----g~I~vwd~~~~~~~~~~ 219 (1088)
++++++. .+ .|.+||..+++........ .......+.+ ++++.++++...+ +...||.+.
T Consensus 101 g~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~---d~~G~l~v~~~~~~~~~~~~~l~~~~-------- 167 (326)
T 2ghs_A 101 SKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRM---HPSGALWIGTMGRKAETGAGSIYHVA-------- 167 (326)
T ss_dssp TEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEE---CTTSCEEEEEEETTCCTTCEEEEEEE--------
T ss_pred CeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEE---CCCCCEEEEeCCCcCCCCceEEEEEe--------
Confidence 8877654 44 4999999888754332211 1223445554 5677766554321 223344332
Q ss_pred CCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEE-EECCCcEEEEEcC--CC-cccCCCC
Q 001391 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS-VSDDRSARIWEVR--AE-YWKDSDS 295 (1088)
Q Consensus 220 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s-~s~Dg~v~iWd~~--~~-~~~~~~~ 295 (1088)
.++ +..+..+......++|+|+++.++. .+.++.|.+|++. ++ ... .
T Consensus 168 -------------------------~g~-~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~---~ 218 (326)
T 2ghs_A 168 -------------------------KGK-VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG---K 218 (326)
T ss_dssp -------------------------TTE-EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS---C
T ss_pred -------------------------CCc-EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc---C
Confidence 111 1112223345788999999987654 4567899999986 33 210 0
Q ss_pred ceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEc-CCCCEEEEEeC
Q 001391 296 IEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYD-SLSSLLVTAGF 368 (1088)
Q Consensus 296 ~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~-~dg~~l~tg~~ 368 (1088)
.+.+. .+......+..+++. +.+.++...++.|.+|+.+++.+..+..+.. .+.+++|. ++++.|+.++.
T Consensus 219 ~~~~~--~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~~~~~-~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 219 AEVFI--DSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGK-QTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp CEEEE--ECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCS-BEEEEEEESTTSCEEEEEEB
T ss_pred ceEEE--ECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEEECCCC-CcEEEEEecCCCCEEEEEec
Confidence 11111 222234456778887 5666666667899999998888888776665 59999998 88876655543
No 226
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.60 E-value=6.8e-06 Score=93.82 Aligned_cols=267 Identities=11% Similarity=0.074 Sum_probs=161.1
Q ss_pred CCceEEecCCCceeeeeE-----EEEEeccCCCCCCCCEEEEEe-----------CCeEEEEECCCCeeEEEEeee----
Q 001391 4 KDLSEWRLDVGQYLGEIS-----ALCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDLEAGTLIRPFQVF---- 63 (1088)
Q Consensus 4 ~~i~iWdl~~g~~~~~V~-----~v~fs~~pd~~~~~~~laag~-----------d~~I~vwd~~tg~~~~~~~~~---- 63 (1088)
++|.+.|+.+++..+.|. .++++ || +++|.++. ++.|.++|..+++.+.++...
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~Pgia~S--pD----gk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r 172 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLPHPVAA--ED----GSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPR 172 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSCEEEEC--TT----SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC
T ss_pred CeEEEEECCCCEEEEEEECCCCCceEEC--CC----CCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccc
Confidence 689999999988443332 89999 99 77666653 468999999999999998763
Q ss_pred --CCcceEEEEecccccccCCCccceeeEEEEE-C-CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEE
Q 001391 64 --HGIRLHGISCNFINCTEGSVSTRVTFEVALF-G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVC 139 (1088)
Q Consensus 64 --~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~ 139 (1088)
.+...+++.|+ |||+ .++++. . +++|.+.|+... +.+..+.-- + +..
T Consensus 173 ~~~g~~P~~~~~s-------pDGk---~lyV~n~~~~~~VsVID~~t~---------------kvv~~I~v~-g---~~~ 223 (426)
T 3c75_H 173 FLVGTYQWMNALT-------PDNK---NLLFYQFSPAPAVGVVDLEGK---------------TFDRMLDVP-D---CYH 223 (426)
T ss_dssp CCBSCCGGGSEEC-------TTSS---EEEEEECSSSCEEEEEETTTT---------------EEEEEEECC-S---EEE
T ss_pred cccCCCcceEEEc-------CCCC---EEEEEecCCCCeEEEEECCCC---------------eEEEEEEcC-C---cee
Confidence 12346788999 8884 444544 3 689999999853 344444321 1 133
Q ss_pred EecccCCC-CEEEEEEcCCcEEEEEcCCCceEEEe----ccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCc
Q 001391 140 FLKVCNGN-RSLAIGCSDNSIRVWDISNSSIILEV----HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (1088)
Q Consensus 140 f~p~~~d~-~~lasgs~Dg~V~iWd~~~~~~~~~~----~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~ 214 (1088)
..| ++ ..+++.+.||.+.+.+..+++..... ............+ .+++..++..+..+.+.+.|.....
T Consensus 224 ~~p---~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~---~~dg~~~~~~s~~g~V~ViD~~~~~ 297 (426)
T 3c75_H 224 IFP---ASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAF---SLRSGRLVWPTYTGKIFQADLTAEG 297 (426)
T ss_dssp EEE---EETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEE---CTTTCEEEEEBTTSEEEEEEECSSC
T ss_pred ecc---CCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeee---cCCCCEEEEEeCCCcEEEEeccCCc
Confidence 445 33 45666777888888888666554321 1111110001111 4556666555677899999986211
Q ss_pred cccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC----------CCcEEEEE
Q 001391 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD----------DRSARIWE 284 (1088)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~----------Dg~v~iWd 284 (1088)
..... .+.+-.. ......... .....++++|+++++..... ++.|.+.|
T Consensus 298 ~~v~~----------------~~~~~~~--~~i~~g~~p---~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID 356 (426)
T 3c75_H 298 ATFRA----------------PIEALTE--AERADDWRP---GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLN 356 (426)
T ss_dssp EEECC----------------CEESSCT--TTGGGTEEE---CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred eEEee----------------eeeeccc--ccccccccc---CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEE
Confidence 10000 0000000 000000001 11123689999887766532 35799999
Q ss_pred cCCCcccCCCCceeeeceeeeccCcceEEEEEC--CC-EEEEEe-CCCcEEEEcC-CCceeEEE
Q 001391 285 VRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS-FIITAG-EDCTCRVWGS-DGKQLKMI 343 (1088)
Q Consensus 285 ~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~-~l~sg~-~Dg~i~vWd~-~~~~~~~~ 343 (1088)
..+.+ .+. .+. -....+.+.|+ +. ++++.. .++.|.|+|. +++.++++
T Consensus 357 ~~T~k--------vv~--~I~-vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 357 AETGE--------RIN--KIE-LGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp TTTCC--------EEE--EEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCCCe--------EEE--EEE-CCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 99854 333 111 11257889998 56 787777 5999999999 88888887
No 227
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.57 E-value=5.9e-06 Score=102.27 Aligned_cols=246 Identities=13% Similarity=0.063 Sum_probs=143.8
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe-----C-CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEE
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS-----G-SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~-----d-~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~l 91 (1088)
..+.+++|| || +++||-+. + .+|+|||+.+|+.+... .++.+..+++|+ + ++ .++
T Consensus 129 ~~l~~~~~S--pD----g~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~--~~~~k~~~~~Ws-D-------g~---~l~ 189 (693)
T 3iuj_A 129 TALDQLSFS--RD----GRILAYSLSLAGSDWREIHLMDVESKQPLETP--LKDVKFSGISWL-G-------NE---GFF 189 (693)
T ss_dssp CEEEEEEEC--TT----SSEEEEEEECSSCCEEEEEEEETTTCSEEEEE--EEEEESCCCEEE-T-------TT---EEE
T ss_pred EEEEEEEEC--CC----CCEEEEEEecCCCceEEEEEEECCCCCCCccc--cCCceeccEEEe-C-------CC---EEE
Confidence 468889999 99 88888543 2 58999999999865431 111123456666 3 31 444
Q ss_pred EEECC-------------CEEEEEEeccCCCCCCCCCCccccccceeeeccC-CCCcEEEEEEecccCCCCEEEEEEc--
Q 001391 92 ALFGE-------------KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR-LSHWVFDVCFLKVCNGNRSLAIGCS-- 155 (1088)
Q Consensus 92 a~~gd-------------~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~I~~v~f~p~~~d~~~lasgs~-- 155 (1088)
.+..+ ..|.+|++.+.. ..-.++..... |..++.++.++| |+++|+....
T Consensus 190 y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~-----------~~~~~v~~~~~~~~~~~~~~~~Sp---Dg~~l~~~~~~~ 255 (693)
T 3iuj_A 190 YSSYDKPDGSELSARTDQHKVYFHRLGTAQ-----------EDDRLVFGAIPAQHHRYVGATVTE---DDRFLLISAANS 255 (693)
T ss_dssp EEESSCCC-------CCCCEEEEEETTSCG-----------GGCEEEESCSGGGCCSEEEEEECT---TSCEEEEEEESS
T ss_pred EEEecCcccccccccCCCcEEEEEECCCCc-----------ccceEEEecCCCCCeEEEEEEEcC---CCCEEEEEEccC
Confidence 44444 348888887543 01234555555 667789999999 9997755432
Q ss_pred --CCcEEEEEcCCCc-eEEEeccCCceeEEEEeeecCCCCCcE-EEEEecC---CeEEEEEeccCccccCCCCCCCccCC
Q 001391 156 --DNSIRVWDISNSS-IILEVHSPERCLLYSMKLWGDNLEALR-IASGTIY---NEIIVWKVDWEHVAPLLNSPEGNHAH 228 (1088)
Q Consensus 156 --Dg~V~iWd~~~~~-~~~~~~~~~~~~~~s~~~~~~s~~~~~-l~sg~~d---g~I~vwd~~~~~~~~~~~~~~~~s~~ 228 (1088)
++.|.++|+.++. ....+..+.....+.+ ++++.. ++....+ +.|..+++.+.
T Consensus 256 ~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~-----~~~g~~l~~~t~~~~~~~~l~~~d~~~~--------------- 315 (693)
T 3iuj_A 256 TSGNRLYVKDLSQENAPLLTVQGDLDADVSLV-----DNKGSTLYLLTNRDAPNRRLVTVDAANP--------------- 315 (693)
T ss_dssp SSCCEEEEEETTSTTCCCEEEECSSSSCEEEE-----EEETTEEEEEECTTCTTCEEEEEETTSC---------------
T ss_pred CCCcEEEEEECCCCCCceEEEeCCCCceEEEE-----eccCCEEEEEECCCCCCCEEEEEeCCCC---------------
Confidence 3589999997763 3344444433322221 133444 4444333 67888888711
Q ss_pred CCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCC---cEEEEEcCCCcccCCCCceeeeceeee
Q 001391 229 GSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR---SARIWEVRAEYWKDSDSIEEVGSSVLY 305 (1088)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg---~v~iWd~~~~~~~~~~~~~~i~~~~~~ 305 (1088)
.......+..|...+. .|++++++|+....++ .|++|++..+.. +. ...
T Consensus 316 ----------------~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~------~~----l~~ 367 (693)
T 3iuj_A 316 ----------------GPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRV------RE----VAL 367 (693)
T ss_dssp ----------------CGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEE------EE----ECC
T ss_pred ----------------CccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCee------EE----eec
Confidence 1112345566666665 8999999887766544 688888875321 11 222
Q ss_pred ccCcceEEEEEC--CCEEEEEeCC----CcEEEEcCCCceeEEEc
Q 001391 306 GHNARVWDCCLT--DSFIITAGED----CTCRVWGSDGKQLKMIK 344 (1088)
Q Consensus 306 ~h~~~I~~v~~~--~~~l~sg~~D----g~i~vWd~~~~~~~~~~ 344 (1088)
.....+..+.++ +..++....+ +++..||+.+.....+.
T Consensus 368 p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~ 412 (693)
T 3iuj_A 368 PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYR 412 (693)
T ss_dssp SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEE
T ss_pred CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEE
Confidence 333455555554 3333333333 78888888443344443
No 228
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.57 E-value=9.1e-07 Score=98.38 Aligned_cols=309 Identities=12% Similarity=0.050 Sum_probs=177.9
Q ss_pred eEEecCCCceeeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccc
Q 001391 7 SEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (1088)
Q Consensus 7 ~iWdl~~g~~~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~ 86 (1088)
.+|....+.. ...+..+. .+ +.+.++..++.|..|| .+++.+..+... ...+..+... +++
T Consensus 11 ~~W~~~~~~~--~~~~~~~d--~~----g~l~v~t~~~~l~~~d-~~g~~~~~~~~~-~~~~~~~~~~-------~~g-- 71 (330)
T 3hxj_A 11 IKWEFLIGNS--IDSSPILA--KN----GTIYLGSSNKNLYAIN-TDGSVKWFFKSG-EIIECRPSIG-------KDG-- 71 (330)
T ss_dssp -CCTTTSCEE--ECCCCEEC--TT----SCEECSSTTTTTEEEC-TTSCEEESSCGG-GEEEECCEET-------TTT--
T ss_pred EEEEEeCCCC--cccCceEc--cC----CeEEEEcCCCEEEEEC-CCCcEEEEEecC-CCcccceEEe-------cCC--
Confidence 4566554442 22344444 44 4444444478899999 889887665542 2235566665 554
Q ss_pred eeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC
Q 001391 87 VTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (1088)
Q Consensus 87 ~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~ 166 (1088)
.+.+ +.++ +..+|... +.+..+...........+. +..|..++.++.|..+|..
T Consensus 72 --~l~v-~t~~-l~~~d~~g----------------~~~~~~~~~~~~~~~~~~~-----~~~l~v~t~~~~l~~~d~~- 125 (330)
T 3hxj_A 72 --TIYF-GSDK-VYAINPDG----------------TEKWRFDTKKAIVSDFTIF-----EDILYVTSMDGHLYAINTD- 125 (330)
T ss_dssp --EECC-SSCE-EEEECCCG----------------GGGGGSCC-----CCEEEE-----TTEEEEECTTSEEEEECTT-
T ss_pred --cEEE-ecCc-EEEECCCC----------------cEEEEEECCCCcccCceEE-----CCEEEEEecCCEEEEEcCC-
Confidence 3333 3334 66666421 1111222222222223332 3457778889999999988
Q ss_pred CceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccce
Q 001391 167 SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (1088)
Q Consensus 167 ~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 246 (1088)
++.......+.. ...++.. .+++. +..++.++.|..+|.. +
T Consensus 126 g~~~~~~~~~~~-~~~~~~~---~~~g~-l~vgt~~~~l~~~d~~----------------------------------g 166 (330)
T 3hxj_A 126 GTEKWRFKTKKA-IYATPIV---SEDGT-IYVGSNDNYLYAINPD----------------------------------G 166 (330)
T ss_dssp SCEEEEEECSSC-CCSCCEE---CTTSC-EEEECTTSEEEEECTT----------------------------------S
T ss_pred CCEEEEEcCCCc-eeeeeEE---cCCCE-EEEEcCCCEEEEECCC----------------------------------C
Confidence 776655543322 1122221 23444 6667778889988865 2
Q ss_pred eeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEe
Q 001391 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAG 325 (1088)
Q Consensus 247 ~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~ 325 (1088)
..+..+......+.++...+++...+.. +.+..+| .+++. +. ........+.++... +..|..++
T Consensus 167 ~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~--------~~--~~~~~~~~~~~~~~~~~g~l~v~t 232 (330)
T 3hxj_A 167 TEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTE--------KW--NFYAGYWTVTRPAISEDGTIYVTS 232 (330)
T ss_dssp CEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCE--------EE--EECCSSCCCSCCEECTTSCEEEEE
T ss_pred CEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcE--------EE--EEccCCcceeceEECCCCeEEEEc
Confidence 2233333344556677777777755544 7788898 44321 11 222333456677777 44788888
Q ss_pred CCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeee
Q 001391 326 EDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKI 405 (1088)
Q Consensus 326 ~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1088)
.++.+..++.+++.+..+..... .+.++.+.+++. |..++.+|.+..+|.+++. .+....
T Consensus 233 ~~~gl~~~~~~g~~~~~~~~~~~-~~~~~~~~~~g~-l~v~t~~ggl~~~d~~g~~------------------~~~~~~ 292 (330)
T 3hxj_A 233 LDGHLYAINPDGTEKWRFKTGKR-IESSPVIGNTDT-IYFGSYDGHLYAINPDGTE------------------KWNFET 292 (330)
T ss_dssp TTTEEEEECTTSCEEEEEECSSC-CCSCCEECTTSC-EEEECTTCEEEEECTTSCE------------------EEEEEC
T ss_pred CCCeEEEECCCCCEeEEeeCCCC-ccccceEcCCCe-EEEecCCCCEEEECCCCcE------------------EEEEEc
Confidence 88889999888887777665443 344566665664 6677888888888864321 111111
Q ss_pred CCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEE
Q 001391 406 PNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHT 445 (1088)
Q Consensus 406 ~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~ 445 (1088)
+ ...+.++...+++.+++++.+|.++..
T Consensus 293 ~------------~~~~~~~~~d~~g~l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 293 G------------SWIIATPVIDENGTIYFGTRNGKFYAL 320 (330)
T ss_dssp S------------SCCCSCCEECTTCCEEEECTTSCEEEE
T ss_pred C------------CccccceEEcCCCEEEEEcCCCeEEEE
Confidence 1 223556667778999999999988743
No 229
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.47 E-value=2e-05 Score=96.98 Aligned_cols=51 Identities=6% Similarity=-0.008 Sum_probs=40.3
Q ss_pred CCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 327 DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 327 Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+|.|+.||+ +|+.+.++..+. +++.-.+...+.+++.|+.||.++.||.++
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~gt~dg~l~a~D~~t 505 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVT--IFNGGTLSTAGNLVFEGSADGRVIAYAADT 505 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred ceeEEEEECCCCCeEeEccCCC--CccCccceECCCEEEEECCCCcEEEEECCC
Confidence 478999999 888888876554 344445666788999999999999999853
No 230
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.47 E-value=3.6e-06 Score=94.54 Aligned_cols=252 Identities=8% Similarity=-0.150 Sum_probs=152.0
Q ss_pred eEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE----------CCCEEEEEEeccCCCCCCCC
Q 001391 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF----------GEKRVKLFELNFELSPNSQY 114 (1088)
Q Consensus 45 ~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~----------gd~~v~iw~l~~~~~~~~~~ 114 (1088)
+|.|+|..+++.+.++..... + ++.++ ||++ .+.++. .+++|.+||+.+.
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~s-------pDg~---~lyVan~~~~r~~~G~~~~~VsviD~~T~------- 106 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAG-------HSGS---DFALASTSFARSAKGKRTDYVEVFDPVTF------- 106 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT-C--EEEEC-------TTSS---CEEEEEEEETTTTSSSEEEEEEEECTTTC-------
T ss_pred eEEEEECCCCeEEEEEeCCCC-C--ceEEC-------CCCC---EEEEEcccccccccCCCCCEEEEEECCCC-------
Confidence 899999999999999997554 4 79999 8884 444443 2688999999863
Q ss_pred CCccccccceeeeccCC-------CCcEEEEEEecccCCCCEEEEEEc--CCcEEE--EEcCCCceEEEeccCCceeEEE
Q 001391 115 QPETCVNLSLVQSLPRL-------SHWVFDVCFLKVCNGNRSLAIGCS--DNSIRV--WDISNSSIILEVHSPERCLLYS 183 (1088)
Q Consensus 115 ~~~~~~~~~~~~~l~~h-------~~~I~~v~f~p~~~d~~~lasgs~--Dg~V~i--Wd~~~~~~~~~~~~~~~~~~~s 183 (1088)
+.+.++... -.....++|+| ||++|+++.. ++.|.+ +|+.+ +.++..+....+
T Consensus 107 --------~vv~~I~v~~~~~~~~g~~P~~ia~Sp---DGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~-- 170 (368)
T 1mda_H 107 --------LPIADIELPDAPRFSVGPRVHIIGNCA---SSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHI-- 170 (368)
T ss_dssp --------CEEEEEEETTSCSCCBSCCTTSEEECT---TSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCC--
T ss_pred --------CEEEEEECCCccccccCCCcceEEEcC---CCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEE--
Confidence 444444321 12456799999 9999988864 467888 98877 444433221111
Q ss_pred EeeecCCCC-CcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeE----EEeCCCCC
Q 001391 184 MKLWGDNLE-ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF----RLVGHEGS 258 (1088)
Q Consensus 184 ~~~~~~s~~-~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~----~~~gh~~~ 258 (1088)
.++ ...+++.+.||.+.+.++.+.... .++... .+.-...+
T Consensus 171 ------~p~g~~~~~~~~~dg~~~~vd~~~~~~~----------------------------~~~v~~~~t~~i~vg~~P 216 (368)
T 1mda_H 171 ------HPGAAATHYLGSCPASLAASDLAAAPAA----------------------------AGIVGAQCTGAQNCSSQA 216 (368)
T ss_dssp ------EEEETTEEECCCCTTSCEEEECCSSCCC----------------------------CEECCCCSCTTSCBCSCC
T ss_pred ------ccCCCeEEEEEcCCCCEEEEECcccccc----------------------------CCeEEEEeeeeeeCCCCc
Confidence 122 234455667888888887620000 011000 00111223
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeee-----ccC---cceEEEEEC--CCEEEEEeC--
Q 001391 259 IFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY-----GHN---ARVWDCCLT--DSFIITAGE-- 326 (1088)
Q Consensus 259 V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~-----~h~---~~I~~v~~~--~~~l~sg~~-- 326 (1088)
. . .++++.++..+. +.|.+.|...... +.+....+. .+. .....++++ +..++.+..
T Consensus 217 ~---~-~~~~~~~~~vs~-~~V~viD~~~~~~------~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~ 285 (368)
T 1mda_H 217 A---Q-ANYPGMLVWAVA-SSILQGDIPAAGA------TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH 285 (368)
T ss_dssp E---E-ETTTTEEEECBS-SCCEEEECCSSCC------EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred c---c-cccCCEEEEEcC-CEEEEEECCCCcc------eEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccc
Confidence 2 3 566666666656 8899999865321 111100110 010 111114565 455554322
Q ss_pred -------CCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC-EEEEEe-CCCCEEEEEcCC
Q 001391 327 -------DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAG-FDSAIKVHQFQA 379 (1088)
Q Consensus 327 -------Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~-~l~tg~-~Dg~I~iwd~~~ 379 (1088)
++.+.++|. +++.+..+.... ..+.++|+||++ ++++.. .++.|.++|+.+
T Consensus 286 ~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 286 SRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp SSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred cCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence 235669999 777777776544 378999999997 567776 599999999954
No 231
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.45 E-value=4e-05 Score=85.10 Aligned_cols=199 Identities=13% Similarity=0.081 Sum_probs=124.3
Q ss_pred CCCceEEecCCCce-----eeeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEee---eCCcceEEEEec
Q 001391 3 KKDLSEWRLDVGQY-----LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQV---FHGIRLHGISCN 74 (1088)
Q Consensus 3 d~~i~iWdl~~g~~-----~~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~---~~~~~V~~i~~s 74 (1088)
++.|.+||..+++. ...|.+++++ |+ ++++++. ...|.+||..+++....... ....++.+++++
T Consensus 70 ~~~i~~~d~~~~~~~~~~~~~~v~~i~~~--~d----g~l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d 142 (326)
T 2ghs_A 70 ERELHELHLASGRKTVHALPFMGSALAKI--SD----SKQLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMH 142 (326)
T ss_dssp GTEEEEEETTTTEEEEEECSSCEEEEEEE--ET----TEEEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEEC
T ss_pred CCEEEEEECCCCcEEEEECCCcceEEEEe--CC----CeEEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEEC
Confidence 45688888887752 2468899999 88 7777765 44599999988875433222 123468899998
Q ss_pred ccccccCCCccceeeEEEEECC----CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEE
Q 001391 75 FINCTEGSVSTRVTFEVALFGE----KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL 150 (1088)
Q Consensus 75 ~~~~~~~~d~~~~~~~la~~gd----~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~l 150 (1088)
|+|+ .++...++ ....||.+. .. .... +..+......++|+| +++.|
T Consensus 143 -------~~G~---l~v~~~~~~~~~~~~~l~~~~-~g------------~~~~---~~~~~~~~~~i~~s~---dg~~l 193 (326)
T 2ghs_A 143 -------PSGA---LWIGTMGRKAETGAGSIYHVA-KG------------KVTK---LFADISIPNSICFSP---DGTTG 193 (326)
T ss_dssp -------TTSC---EEEEEEETTCCTTCEEEEEEE-TT------------EEEE---EEEEESSEEEEEECT---TSCEE
T ss_pred -------CCCC---EEEEeCCCcCCCCceEEEEEe-CC------------cEEE---eeCCCcccCCeEEcC---CCCEE
Confidence 7772 33333332 345566655 21 0111 112234567899999 99876
Q ss_pred EEE-EcCCcEEEEEcC--CC-ce-----EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCC
Q 001391 151 AIG-CSDNSIRVWDIS--NS-SI-----ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNS 221 (1088)
Q Consensus 151 asg-s~Dg~V~iWd~~--~~-~~-----~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~ 221 (1088)
+.+ +.++.|.+|++. ++ .. ...+... ......+.+ ++++.+.++....+.|.+|+..
T Consensus 194 yv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~-~~~p~gi~~---d~~G~lwva~~~~~~v~~~d~~---------- 259 (326)
T 2ghs_A 194 YFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGI-KGGMDGSVC---DAEGHIWNARWGEGAVDRYDTD---------- 259 (326)
T ss_dssp EEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTS-SSEEEEEEE---CTTSCEEEEEETTTEEEEECTT----------
T ss_pred EEEECCCCEEEEEEcccccCCcccCceEEEECCCC-CCCCCeeEE---CCCCCEEEEEeCCCEEEEECCC----------
Confidence 555 457899999986 55 32 2222111 122334444 5677777666667888888864
Q ss_pred CCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEc-CCCCEEEEEE
Q 001391 222 PEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS-SCGSKLVSVS 275 (1088)
Q Consensus 222 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~s-p~g~~l~s~s 275 (1088)
++.+..+..+...+.+++|. |+++.|..++
T Consensus 260 ------------------------g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 260 ------------------------GNHIARYEVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp ------------------------CCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred ------------------------CCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence 33445566666789999998 8887765444
No 232
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.38 E-value=0.02 Score=73.76 Aligned_cols=147 Identities=10% Similarity=0.183 Sum_probs=84.2
Q ss_pred CCCeEEEec----------CCCCEEEEEEcCCCcCcceeeeeeeeccccceeeeEEEeec-CCCeEEEEECCCCeEEEEe
Q 001391 483 IDDWVALGD----------GKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKS-LGHRFIFTADPKGRLKLWQ 551 (1088)
Q Consensus 483 ~~~~la~g~----------~dg~I~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~L~s~~~dg~i~vwd 551 (1088)
...++++|+ ..|.|++|++.+. +.++.. ... +.+.+.+.. .+|++|++. ...+++|+
T Consensus 843 ~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~----kL~lv~--~~~----v~g~v~al~~~~g~Lla~i--g~~l~vy~ 910 (1158)
T 3ei3_A 843 PNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG----KLQTVA--EKE----VKGAVYSMVEFNGKLLASI--NSTVRLYE 910 (1158)
T ss_dssp CCCEEEEEEEECCTTCSSCCCEEEEEEEEETT----EEEEEE--EEE----ESSCEEEEEEETTEEEEEE--TTEEEEEE
T ss_pred CCEEEEEEeeecCCCCCCCCceEEEEEEEECC----EEEEEE--EEE----cCCcCEEEeeeCCEEEEEc--CCEEEEEE
Confidence 347888876 3588999999732 222211 111 112222222 356655544 46899999
Q ss_pred cCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcccccccccccccccCcceee
Q 001391 552 LCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYF 631 (1088)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~~~~~~~~~~~~~l~~~~~~ 631 (1088)
+...+. +.+... .+. .|..+.....++++++|+.-..|.++.+..... ++...+.
T Consensus 911 l~~~~~-----------L~~~~~---~~~-~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~---------~L~~~a~- 965 (1158)
T 3ei3_A 911 WTTEKE-----------LRTECN---HYN-NIMALYLKTKGDFILVGDLMRSVLLLAYKPMEG---------NFEEIAR- 965 (1158)
T ss_dssp ECTTSC-----------EEEEEE---ECC-CSCEEEEEEETTEEEEEESSBCEEEEEEETTTT---------EEEEEEE-
T ss_pred CCCCce-----------EEEEee---ccc-cEEEEEEeccCCEEEEEEhhheEEEEEEEcCCC---------eEEEEEe-
Confidence 974321 111011 111 133334444588999999999998877653211 3333321
Q ss_pred cccccccceeEEEEEeccCCceEEEEecCCCeEEEEEeecC
Q 001391 632 KGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKD 672 (1088)
Q Consensus 632 ~g~hg~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~ 672 (1088)
.-....+|++.+.. + ..++.+-.+|.+.+...+..
T Consensus 966 --D~~~~~vta~~~ld---~-~t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A 966 --DFNPNWMSAVEILD---D-DNFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp --CCSCBCEEEEEEEE---T-TEEEEEETTSEEEEEEECTT
T ss_pred --ecccccEEEEEEEc---c-CcEEEEcCCCcEEEEecCCC
Confidence 11114699999983 3 47778889999999888763
No 233
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.38 E-value=6.5e-06 Score=91.38 Aligned_cols=278 Identities=9% Similarity=-0.034 Sum_probs=165.7
Q ss_pred CCCCceEEecCCCcee-------eeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEec
Q 001391 2 GKKDLSEWRLDVGQYL-------GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (1088)
Q Consensus 2 ~d~~i~iWdl~~g~~~-------~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s 74 (1088)
.++.|..|| .+++.. ..+.++.+. ++ + .|.+|+.+ |..||. +|+.+..+..... ......+.
T Consensus 38 ~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~--~~----g-~l~v~t~~-l~~~d~-~g~~~~~~~~~~~-~~~~~~~~ 106 (330)
T 3hxj_A 38 SNKNLYAIN-TDGSVKWFFKSGEIIECRPSIG--KD----G-TIYFGSDK-VYAINP-DGTEKWRFDTKKA-IVSDFTIF 106 (330)
T ss_dssp TTTTTEEEC-TTSCEEESSCGGGEEEECCEET--TT----T-EECCSSCE-EEEECC-CGGGGGGSCC------CCEEEE
T ss_pred CCCEEEEEC-CCCcEEEEEecCCCcccceEEe--cC----C-cEEEecCc-EEEECC-CCcEEEEEECCCC-cccCceEE
Confidence 366788888 777621 234566665 55 4 45555545 889986 6666544443221 12222222
Q ss_pred ccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE
Q 001391 75 FINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC 154 (1088)
Q Consensus 75 ~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs 154 (1088)
++ .+.+...++.+..+|.. .. .......+...+.++...+ ++. |..++
T Consensus 107 --------~~----~l~v~t~~~~l~~~d~~-g~---------------~~~~~~~~~~~~~~~~~~~---~g~-l~vgt 154 (330)
T 3hxj_A 107 --------ED----ILYVTSMDGHLYAINTD-GT---------------EKWRFKTKKAIYATPIVSE---DGT-IYVGS 154 (330)
T ss_dssp --------TT----EEEEECTTSEEEEECTT-SC---------------EEEEEECSSCCCSCCEECT---TSC-EEEEC
T ss_pred --------CC----EEEEEecCCEEEEEcCC-CC---------------EEEEEcCCCceeeeeEEcC---CCE-EEEEc
Confidence 33 55555557888888866 22 1222223334456666665 665 66677
Q ss_pred cCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCC
Q 001391 155 SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF 234 (1088)
Q Consensus 155 ~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~ 234 (1088)
.++.|..+|.. ++.......+.. .+.++.. ..++.+. .++ +.|..+| .
T Consensus 155 ~~~~l~~~d~~-g~~~~~~~~~~~-~~~~~~~---d~~g~l~-v~t--~~l~~~d-~----------------------- 202 (330)
T 3hxj_A 155 NDNYLYAINPD-GTEKWRFKTNDA-ITSAASI---GKDGTIY-FGS--DKVYAIN-P----------------------- 202 (330)
T ss_dssp TTSEEEEECTT-SCEEEEEECSSC-CCSCCEE---CTTCCEE-EES--SSEEEEC-T-----------------------
T ss_pred CCCEEEEECCC-CCEeEEEecCCC-ceeeeEE---cCCCEEE-EEe--CEEEEEC-C-----------------------
Confidence 88999999998 776655543321 1222222 2345444 444 8888888 5
Q ss_pred ceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEE
Q 001391 235 KCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDC 314 (1088)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v 314 (1088)
++..+.........+.++...++|. +..++.++.+..++.... .+. ........+.++
T Consensus 203 ----------~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g~---------~~~--~~~~~~~~~~~~ 260 (330)
T 3hxj_A 203 ----------DGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDGT---------EKW--RFKTGKRIESSP 260 (330)
T ss_dssp ----------TSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTSC---------EEE--EEECSSCCCSCC
T ss_pred ----------CCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCCC---------EeE--EeeCCCCccccc
Confidence 3444444554556678888888875 445566777888874332 121 222222223344
Q ss_pred EEC-CCEEEEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 315 CLT-DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 315 ~~~-~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
.+. +..|..++.+|.+..+|.+++.+..+..... .+.++...+++. |..++.+|.+++...+
T Consensus 261 ~~~~~g~l~v~t~~ggl~~~d~~g~~~~~~~~~~~-~~~~~~~d~~g~-l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 261 VIGNTDTIYFGSYDGHLYAINPDGTEKWNFETGSW-IIATPVIDENGT-IYFGTRNGKFYALFNL 323 (330)
T ss_dssp EECTTSCEEEECTTCEEEEECTTSCEEEEEECSSC-CCSCCEECTTCC-EEEECTTSCEEEEEC-
T ss_pred eEcCCCeEEEecCCCCEEEECCCCcEEEEEEcCCc-cccceEEcCCCE-EEEEcCCCeEEEEecc
Confidence 555 6788889999999999988887777655444 477787878876 5668899999988764
No 234
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.38 E-value=5e-05 Score=93.17 Aligned_cols=50 Identities=6% Similarity=0.013 Sum_probs=39.9
Q ss_pred CcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 328 g~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
|.|..||+ +++.+..+... . ++++..+..++.+++.++.||.+++||..+
T Consensus 457 g~l~A~D~~tG~~~W~~~~~-~-~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t 507 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHV-S-PWNGGTLTTAGNVVFQGTADGRLVAYHAAT 507 (677)
T ss_dssp EEEEEEETTTTEEEEEEEES-S-SCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred cEEEEEeCCCCcEEeecCCC-C-CCcCcceEeCCCEEEEECCCCcEEEEECCC
Confidence 78999999 78888777543 2 456666777888899999999999999853
No 235
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.37 E-value=2.2e-07 Score=105.49 Aligned_cols=198 Identities=10% Similarity=-0.048 Sum_probs=104.7
Q ss_pred eEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc
Q 001391 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (1088)
Q Consensus 89 ~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~ 168 (1088)
.+++.+.|+.|..||..++. .+..+.. +.+.+..+.+ ++..+++++.|+.|+.||..+++
T Consensus 11 ~v~~gs~dg~v~a~d~~tG~---------------~~W~~~~--~~~~s~p~~~---~g~~~v~~s~dg~l~a~d~~tG~ 70 (369)
T 2hz6_A 11 LLFVSTLDGSLHAVSKRTGS---------------IKWTLKE--DPVLQVPTHV---EEPAFLPDPNDGSLYTLGSKNNE 70 (369)
T ss_dssp EEEEEETTSEEEEEETTTCC---------------EEEEEEC--CCSCCCC--------CCEEECTTTCCEEEC-----C
T ss_pred EEEEEcCCCEEEEEECCCCC---------------EEEEecC--CCceecceEc---CCCEEEEeCCCCEEEEEECCCCc
Confidence 66677779999999988543 3333333 3455555555 77778888899999999999988
Q ss_pred eEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee
Q 001391 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1088)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 248 (1088)
.+.....+......+. ....++..|++|+.++.|+.||.. +++.
T Consensus 71 ~~w~~~~~~~~~~~~s---p~~~~~~~v~~g~~dg~v~a~D~~---------------------------------tG~~ 114 (369)
T 2hz6_A 71 GLTKLPFTIPELVQAS---PCRSSDGILYMGKKQDIWYVIDLL---------------------------------TGEK 114 (369)
T ss_dssp CSEECSCCHHHHHTTC---SCC-----CCCCEEEEEEEEECCC-------------------------------------
T ss_pred eeeeeeccCccccccC---ceEecCCEEEEEeCCCEEEEEECC---------------------------------CCcE
Confidence 7666543321111000 000134577888899999999998 4555
Q ss_pred eEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC-----CEEEE
Q 001391 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-----SFIIT 323 (1088)
Q Consensus 249 ~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~-----~~l~s 323 (1088)
+..+..+. ...++|++..+++++.|+.|+.||..+++. .-.+ ..... ....+.+ ..++.
T Consensus 115 ~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~-----~W~~---~~~~~----~~~~~~~~~~~~~~v~~ 178 (369)
T 2hz6_A 115 QQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTREL-----RWNA---TYFDY----AASLPEDDVDYKMSHFV 178 (369)
T ss_dssp ----------------------EEEEEEEEEEECCCSSSSSC-----CCEE---EEEEE----CCBCCCCCTTCCCCEEE
T ss_pred EEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCE-----EEeE---ecccc----cCccccCCccccceEEE
Confidence 55544433 234567888999999999999999988743 1111 11111 1122222 67888
Q ss_pred EeCCCcEEEEcC-CCceeEEEcccCCCCeEE-EEEcCCC
Q 001391 324 AGEDCTCRVWGS-DGKQLKMIKEHIGRGIWR-CLYDSLS 360 (1088)
Q Consensus 324 g~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~-l~~~~dg 360 (1088)
++.||.++.||. +|+.+..+... . ++.. ..+++++
T Consensus 179 ~~~dg~v~a~d~~tG~~~W~~~~~-~-pv~~~~~~~~dg 215 (369)
T 2hz6_A 179 SNGDGLVVTVDSESGDVLWIQNYA-S-PVVAFYVWQREG 215 (369)
T ss_dssp EETSCEEEEECTTTCCEEEEEECS-S-CEEEEEECTTSS
T ss_pred ECCCCEEEEEECCCCcEEEEecCC-C-ceEEEEEecCCc
Confidence 999999999999 88888776633 2 4443 2334444
No 236
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.36 E-value=1.7e-05 Score=98.08 Aligned_cols=200 Identities=8% Similarity=0.012 Sum_probs=121.1
Q ss_pred CCCCcEEEEEEecccCCCCEEEEE-----EcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCC-
Q 001391 130 RLSHWVFDVCFLKVCNGNRSLAIG-----CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN- 203 (1088)
Q Consensus 130 ~h~~~I~~v~f~p~~~d~~~lasg-----s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg- 203 (1088)
+|...+..++|+| ||++||-+ +.+.+|++||+.+++.+.......+ ..++++ + |+..|+.+..+.
T Consensus 126 ~~~~~l~~~~~Sp---Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k--~~~~~W---s-Dg~~l~y~~~~~~ 196 (693)
T 3iuj_A 126 DGTTALDQLSFSR---DGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVK--FSGISW---L-GNEGFFYSSYDKP 196 (693)
T ss_dssp TSCCEEEEEEECT---TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEE--SCCCEE---E-TTTEEEEEESSCC
T ss_pred CCcEEEEEEEECC---CCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCce--eccEEE---e-CCCEEEEEEecCc
Confidence 4666899999999 99988743 2335799999999986543111110 112232 4 677777776663
Q ss_pred ------------eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC-CCCCEEEEEEcCCCCE
Q 001391 204 ------------EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG-HEGSIFRIEWSSCGSK 270 (1088)
Q Consensus 204 ------------~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g-h~~~V~~v~~sp~g~~ 270 (1088)
.|++|++.+.. .....+..... |...+..+.|+|||++
T Consensus 197 ~~~~~~~~~~~~~v~~~~lgt~~-----------------------------~~~~~v~~~~~~~~~~~~~~~~SpDg~~ 247 (693)
T 3iuj_A 197 DGSELSARTDQHKVYFHRLGTAQ-----------------------------EDDRLVFGAIPAQHHRYVGATVTEDDRF 247 (693)
T ss_dssp C-------CCCCEEEEEETTSCG-----------------------------GGCEEEESCSGGGCCSEEEEEECTTSCE
T ss_pred ccccccccCCCcEEEEEECCCCc-----------------------------ccceEEEecCCCCCeEEEEEEEcCCCCE
Confidence 38888876211 01123333333 5566889999999998
Q ss_pred EEEEEC----CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEE-CCC-EEEEEeCC---CcEEEEcCC-Cce-
Q 001391 271 LVSVSD----DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCL-TDS-FIITAGED---CTCRVWGSD-GKQ- 339 (1088)
Q Consensus 271 l~s~s~----Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~-~~~-~l~sg~~D---g~i~vWd~~-~~~- 339 (1088)
|+.... +..|+++|+.++.. .+. .+..+......... .+. ++++...+ +.|.++++. +..
T Consensus 248 l~~~~~~~~~~~~i~~~d~~~~~~-------~~~--~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~ 318 (693)
T 3iuj_A 248 LLISAANSTSGNRLYVKDLSQENA-------PLL--TVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA 318 (693)
T ss_dssp EEEEEESSSSCCEEEEEETTSTTC-------CCE--EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGG
T ss_pred EEEEEccCCCCcEEEEEECCCCCC-------ceE--EEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc
Confidence 754332 35899999877521 111 34444444444322 244 44454443 578899984 332
Q ss_pred -eEEEcccCCCCeEEEEEcCCCCEEEEEeCCC---CEEEEEcCC
Q 001391 340 -LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS---AIKVHQFQA 379 (1088)
Q Consensus 340 -~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg---~I~iwd~~~ 379 (1088)
...+..|... +. .|+++++.|+....++ .|++|++.+
T Consensus 319 ~~~~l~~~~~~-~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g 359 (693)
T 3iuj_A 319 HWRDLIPERQQ-VL--TVHSGSGYLFAEYMVDATARVEQFDYEG 359 (693)
T ss_dssp GCEEEECCCSS-CE--EEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred ccEEEecCCCC-EE--EEEEECCEEEEEEEECCeeEEEEEECCC
Confidence 3566666663 44 7888888777666544 577787754
No 237
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.26 E-value=8.8e-05 Score=81.40 Aligned_cols=226 Identities=10% Similarity=0.042 Sum_probs=134.2
Q ss_pred eEEEEEeccCCCCCCCC-EEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE-CC
Q 001391 20 ISALCFVHLPSHLSSLP-FLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GE 96 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~-~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd 96 (1088)
..+..|+ |+ ++ ++.++. ++.|..|+. +++ +..+.... ..+.+++++ ++| .++++. ++
T Consensus 47 ~egp~~~--~~----g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~-~~~~gl~~d-------~dG----~l~v~~~~~ 106 (305)
T 3dr2_A 47 SEGPAWW--EA----QRTLVWSDLVGRRVLGWRE-DGT-VDVLLDAT-AFTNGNAVD-------AQQ----RLVHCEHGR 106 (305)
T ss_dssp EEEEEEE--GG----GTEEEEEETTTTEEEEEET-TSC-EEEEEESC-SCEEEEEEC-------TTS----CEEEEETTT
T ss_pred ccCCeEe--CC----CCEEEEEECCCCEEEEEeC-CCC-EEEEeCCC-CccceeeEC-------CCC----CEEEEECCC
Confidence 4578899 88 77 555555 589999998 455 34444433 368999999 787 555554 46
Q ss_pred CEEEEEEeccCCCCCCCCCCcccccccee-eeccCC-CCcEEEEEEecccCCCCEEEE----EEc-------------CC
Q 001391 97 KRVKLFELNFELSPNSQYQPETCVNLSLV-QSLPRL-SHWVFDVCFLKVCNGNRSLAI----GCS-------------DN 157 (1088)
Q Consensus 97 ~~v~iw~l~~~~~~~~~~~~~~~~~~~~~-~~l~~h-~~~I~~v~f~p~~~d~~~las----gs~-------------Dg 157 (1088)
+.|.+|+.+ .. .+.+ ....+. ...+.++++.| +|.+.+| |.. .+
T Consensus 107 ~~v~~~~~~-g~-------------~~~~~~~~~~~~~~~~~~i~~d~---dG~l~~td~~~g~~~~~~~~~~~~~~~~~ 169 (305)
T 3dr2_A 107 RAITRSDAD-GQ-------------AHLLVGRYAGKRLNSPNDLIVAR---DGAIWFTDPPFGLRKPSQGCPADPELAHH 169 (305)
T ss_dssp TEEEEECTT-SC-------------EEEEECEETTEECSCCCCEEECT---TSCEEEECCSGGGSCGGGSCCCCCSSSCE
T ss_pred CEEEEECCC-CC-------------EEEEEeccCCCccCCCCCEEECC---CCCEEEeCcCCCccccccccccccccCCC
Confidence 889999865 21 1111 111221 24577899999 9998876 332 24
Q ss_pred cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecC------CeEEEEEeccCccccCCCCCCCccCCCCC
Q 001391 158 SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY------NEIIVWKVDWEHVAPLLNSPEGNHAHGSS 231 (1088)
Q Consensus 158 ~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d------g~I~vwd~~~~~~~~~~~~~~~~s~~~~~ 231 (1088)
.|..||..+++..... . ......+++ ++++..|+.+... +.|.+|++.... ..
T Consensus 170 ~v~~~d~~~g~~~~~~-~--~~~p~gl~~---spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~-------------- 228 (305)
T 3dr2_A 170 SVYRLPPDGSPLQRMA-D--LDHPNGLAF---SPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LH-------------- 228 (305)
T ss_dssp EEEEECSSSCCCEEEE-E--ESSEEEEEE---CTTSSEEEEEECCC---CCCEEEEEEEETTE-EE--------------
T ss_pred eEEEEcCCCCcEEEEe-c--CCCCcceEE---cCCCCEEEEEecCCcCCCCCEEEEEEecCCC-cc--------------
Confidence 5777777666544322 1 111233444 6788877666554 789999987111 00
Q ss_pred CCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcce
Q 001391 232 SDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311 (1088)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I 311 (1088)
..... .....+...+++++++|...++. .+ .|.+|+.... .+. .+..+. .+
T Consensus 229 -------------~~~~~--~~~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~~g~---------~~~--~~~~~~-~~ 279 (305)
T 3dr2_A 229 -------------DRRHF--ASVPDGLPDGFCVDRGGWLWSSS-GT-GVCVFDSDGQ---------LLG--HIPTPG-TA 279 (305)
T ss_dssp -------------EEEEE--ECCSSSCCCSEEECTTSCEEECC-SS-EEEEECTTSC---------EEE--EEECSS-CC
T ss_pred -------------CCeEE--EECCCCCCCeEEECCCCCEEEec-CC-cEEEECCCCC---------EEE--EEECCC-ce
Confidence 01111 11123456678999999955554 44 4899998542 222 222222 57
Q ss_pred EEEEEC--CCEEEEEeCCCcEEE
Q 001391 312 WDCCLT--DSFIITAGEDCTCRV 332 (1088)
Q Consensus 312 ~~v~~~--~~~l~sg~~Dg~i~v 332 (1088)
.+++|. ++.|..++.++..++
T Consensus 280 ~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 280 SNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp CEEEECTTSCEEEEEETTEEEEE
T ss_pred eEEEEeCCCCEEEEEcCCeEEEE
Confidence 888896 456766666654443
No 238
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.24 E-value=3e-05 Score=86.96 Aligned_cols=270 Identities=9% Similarity=-0.031 Sum_probs=156.5
Q ss_pred CceEEecCCCceeeeeE-----EEEEeccCCCCCCCCEEEEEe-----------CCeEEEEECCCCeeEEEEeeeC----
Q 001391 5 DLSEWRLDVGQYLGEIS-----ALCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDLEAGTLIRPFQVFH---- 64 (1088)
Q Consensus 5 ~i~iWdl~~g~~~~~V~-----~v~fs~~pd~~~~~~~laag~-----------d~~I~vwd~~tg~~~~~~~~~~---- 64 (1088)
+|.+.|..+++..+.|. .++|+ || +++|.++. ++.|.+||+.+++.++++....
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P~i~~s--pD----g~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~ 120 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLSLAVAG--HS----GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF 120 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTCEEEEC--TT----SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSC
T ss_pred eEEEEECCCCeEEEEEeCCCCCceEEC--CC----CCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccc
Confidence 67799999988433321 79999 99 77777764 4789999999999999998641
Q ss_pred --CcceEEEEecccccccCCCccceeeEEEEE-C-CCEEEE--EEeccCCCCCCCCCCccccccceeeeccCCCCcEEEE
Q 001391 65 --GIRLHGISCNFINCTEGSVSTRVTFEVALF-G-EKRVKL--FELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDV 138 (1088)
Q Consensus 65 --~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-g-d~~v~i--w~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v 138 (1088)
+...++++++ |||+ .++++. + +..+.+ +|..+ ++.+.- .+. .
T Consensus 121 ~~g~~P~~ia~S-------pDGk---~lyVan~~~~~~v~V~~iD~~t------------------v~~i~v-~~~---~ 168 (368)
T 1mda_H 121 SVGPRVHIIGNC-------ASSA---CLLFFLFGSSAAAGLSVPGASD------------------DQLTKS-ASC---F 168 (368)
T ss_dssp CBSCCTTSEEEC-------TTSS---CEEEEECSSSCEEEEEETTTEE------------------EEEEEC-SSC---C
T ss_pred ccCCCcceEEEc-------CCCC---EEEEEccCCCCeEEEEEEchhh------------------ceEEEC-CCc---e
Confidence 1246889999 8884 444443 3 467888 87763 111110 010 1
Q ss_pred EEecccCCC-CEEEEEEcCCcEEEEEcCC-----CceEEE----eccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEE
Q 001391 139 CFLKVCNGN-RSLAIGCSDNSIRVWDISN-----SSIILE----VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVW 208 (1088)
Q Consensus 139 ~f~p~~~d~-~~lasgs~Dg~V~iWd~~~-----~~~~~~----~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vw 208 (1088)
.+.| ++ ..+++.+.|+.+.+.|+.+ ++.... +....... . .+++..++..+. +.+.+.
T Consensus 169 ~~~p---~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~----~----~~~~~~~~~vs~-~~V~vi 236 (368)
T 1mda_H 169 HIHP---GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA----Q----ANYPGMLVWAVA-SSILQG 236 (368)
T ss_dssp CCEE---EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE----E----ETTTTEEEECBS-SCCEEE
T ss_pred EEcc---CCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc----c----cccCCEEEEEcC-CEEEEE
Confidence 2334 33 3445566788888888876 332211 11111111 1 133444444444 889998
Q ss_pred EeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC---------CCc
Q 001391 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD---------DRS 279 (1088)
Q Consensus 209 d~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~---------Dg~ 279 (1088)
|....... .+..|............. ......++++|+++++..+.. +..
T Consensus 237 D~~~~~~~-------------------v~~~~~~~~~~~~~~~~~--p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~ 295 (368)
T 1mda_H 237 DIPAAGAT-------------------MKAAIDGNESGRKADNFR--SAGFQMVAKLKNTDGIMILTVEHSRSCLAAAEN 295 (368)
T ss_dssp ECCSSCCE-------------------EECCCCSSCTHHHHTTEE--ECSSSCEEEETTTTEEEEEEEECSSCTTSCEEE
T ss_pred ECCCCcce-------------------EEEEEEeccccccccccc--cCcceeeEEcCCCCEEEEEeccccCcccccCCC
Confidence 88511000 000000000000000000 011112679999988776532 235
Q ss_pred EEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CC-EEEEEe-CCCcEEEEcC-CCceeEEEcccCCCCeEEE
Q 001391 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS-FIITAG-EDCTCRVWGS-DGKQLKMIKEHIGRGIWRC 354 (1088)
Q Consensus 280 v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~-~l~sg~-~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l 354 (1088)
+.++|+.+.+ .+. .+... ...+.++|+ +. ++++.. .+++|.++|+ +++.+.++..... -+.+
T Consensus 296 ~~ViD~~t~~--------vv~--~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~--P~~i 362 (368)
T 1mda_H 296 TSSVTASVGQ--------TSG--PISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG--PESL 362 (368)
T ss_dssp EEEEESSSCC--------EEE--CCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC--CCEE
T ss_pred EEEEECCCCe--------EEE--EEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC--CCEE
Confidence 6699999863 333 12111 257889998 44 667777 5999999999 8888888876554 5677
Q ss_pred EEcC
Q 001391 355 LYDS 358 (1088)
Q Consensus 355 ~~~~ 358 (1088)
++.+
T Consensus 363 ~~~~ 366 (368)
T 1mda_H 363 SVQN 366 (368)
T ss_dssp ECCC
T ss_pred Eeec
Confidence 7654
No 239
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.20 E-value=0.00056 Score=77.13 Aligned_cols=266 Identities=11% Similarity=0.046 Sum_probs=160.1
Q ss_pred CeEEEEECCC-----CeeEEEEeeeC-CcceEEEEecc----cccccC--CCccceeeEEEEEC--CCEEEEEEeccCCC
Q 001391 44 SQVLLYDLEA-----GTLIRPFQVFH-GIRLHGISCNF----INCTEG--SVSTRVTFEVALFG--EKRVKLFELNFELS 109 (1088)
Q Consensus 44 ~~I~vwd~~t-----g~~~~~~~~~~-~~~V~~i~~s~----~~~~~~--~d~~~~~~~la~~g--d~~v~iw~l~~~~~ 109 (1088)
..|.+.|+.. +++++.+.... +...|.+-|.. .+.... .+. ..|.+.+ +++|.|+|+.+..
T Consensus 43 d~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r----~~l~v~~l~s~~I~viD~~t~p- 117 (462)
T 2ece_A 43 DFIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIER----RFLIVPGLRSSRIYIIDTKPNP- 117 (462)
T ss_dssp CEEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCS----CEEEEEBTTTCCEEEEECCSCT-
T ss_pred CeEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccC----CEEEEccCCCCeEEEEECCCCC-
Confidence 4788899886 88888887643 22466666620 001112 343 4555554 7899999987432
Q ss_pred CCCCCCCccccccceeeecc------C-CCCcEEEEEEecccCCCCEEEEEEcC------CcEEEEEcCCCceEEEeccC
Q 001391 110 PNSQYQPETCVNLSLVQSLP------R-LSHWVFDVCFLKVCNGNRSLAIGCSD------NSIRVWDISNSSIILEVHSP 176 (1088)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~------~-h~~~I~~v~f~p~~~d~~~lasgs~D------g~V~iWd~~~~~~~~~~~~~ 176 (1088)
.+.+..+.+. . -...-..+..+| +| .++++..+ +.|.+.|..+++.+.++...
T Consensus 118 ----------~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p---dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~ 183 (462)
T 2ece_A 118 ----------REPKIIKVIEPEEVKKVSGYSRLHTVHCGP---DA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEID 183 (462)
T ss_dssp ----------TSCEEEEEECHHHHHHHHCEEEEEEEEECS---SC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSB
T ss_pred ----------CCceeeeeechhhcccccCCCcccceeECC---Ce-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccC
Confidence 0134444442 1 112456778889 88 66666555 78999999999999988743
Q ss_pred Cc--eeEEEEeeecCCCCCcEEEEEe-------------------cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCc
Q 001391 177 ER--CLLYSMKLWGDNLEALRIASGT-------------------IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (1088)
Q Consensus 177 ~~--~~~~s~~~~~~s~~~~~l~sg~-------------------~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~ 235 (1088)
.. ...|.+.+ +|+++.+++.. ..++|.+||+.
T Consensus 184 ~~~~~~~Yd~~~---~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~------------------------ 236 (462)
T 2ece_A 184 RGDQYLAYDFWW---NLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR------------------------ 236 (462)
T ss_dssp CTTCCCCCCEEE---ETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT------------------------
T ss_pred CCCccccceEEE---CCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC------------------------
Confidence 22 22333333 46777777774 36899999998
Q ss_pred eeEecccccceeeeEEEeCC--CCCEEEEEE--cCCCCEEEEEE------CCCcEEEEEcCCCcccCCCCceee--ecee
Q 001391 236 CFKLQDQQHTAVNLFRLVGH--EGSIFRIEW--SSCGSKLVSVS------DDRSARIWEVRAEYWKDSDSIEEV--GSSV 303 (1088)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~gh--~~~V~~v~~--sp~g~~l~s~s------~Dg~v~iWd~~~~~~~~~~~~~~i--~~~~ 303 (1088)
+.+.+.++.-. ......+.| +|+++++..++ .+++|.+|....+... ..+.+ ....
T Consensus 237 ---------~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~---~~~vIdi~~~~ 304 (462)
T 2ece_A 237 ---------KRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWN---AEKVIEIPAEP 304 (462)
T ss_dssp ---------TTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEE---EEEEEEECCEE
T ss_pred ---------CCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCcee---EEEEEeCCCcc
Confidence 44555555532 133456666 99999877665 5678888776543220 00111 0000
Q ss_pred eec-----------cCcceEEEEEC--CCEEEEEe-CCCcEEEEcCC----CceeEEEcccC---------CC----CeE
Q 001391 304 LYG-----------HNARVWDCCLT--DSFIITAG-EDCTCRVWGSD----GKQLKMIKEHI---------GR----GIW 352 (1088)
Q Consensus 304 ~~~-----------h~~~I~~v~~~--~~~l~sg~-~Dg~i~vWd~~----~~~~~~~~~h~---------~~----~V~ 352 (1088)
..+ -......+.++ +.+|+.+. ..+.|.++|+. .+.+..+.... +. .-.
T Consensus 305 v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr 384 (462)
T 2ece_A 305 LEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQ 384 (462)
T ss_dssp CCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCC
T ss_pred ccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCC
Confidence 000 02346778887 56665554 46899999982 24444443220 00 236
Q ss_pred EEEEcCCCCEEEEEe
Q 001391 353 RCLYDSLSSLLVTAG 367 (1088)
Q Consensus 353 ~l~~~~dg~~l~tg~ 367 (1088)
.++++|||++|+++.
T Consensus 385 ~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 385 MLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECTTSSEEEEEC
T ss_pred EEEEcCCCCEEEEEc
Confidence 889999999998887
No 240
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.18 E-value=0.00013 Score=81.59 Aligned_cols=244 Identities=9% Similarity=0.006 Sum_probs=141.1
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe---CCeEEEEECCCCeeEEEEee------eCCcceEEEEecccccccCCCcccee
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS---GSQVLLYDLEAGTLIRPFQV------FHGIRLHGISCNFINCTEGSVSTRVT 88 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~---d~~I~vwd~~tg~~~~~~~~------~~~~~V~~i~~s~~~~~~~~d~~~~~ 88 (1088)
.....|+++ |+ ++++++.. ++.++||.+.++++. .+.. .+-..+++++++ +++
T Consensus 17 ~~p~~va~~--~~----g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d-------~~g---- 78 (343)
T 2qe8_A 17 LAPGNITLT--PD----GRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSD-------GNG---- 78 (343)
T ss_dssp SCEEEEEEC--TT----SCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEEC-------SSS----
T ss_pred CCcceEEEC--CC----CCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEc-------CCC----
Confidence 467899999 98 88888854 243555555466543 2211 112468999998 776
Q ss_pred eEEEEE-C-----CCEEEEEEeccCCCCCCCCCCccccccceeeecc------CCCCcEEEEEEecccCCCCEE-EEEE-
Q 001391 89 FEVALF-G-----EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP------RLSHWVFDVCFLKVCNGNRSL-AIGC- 154 (1088)
Q Consensus 89 ~~la~~-g-----d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~------~h~~~I~~v~f~p~~~d~~~l-asgs- 154 (1088)
.+.++- + ++.|.+||+.+.. .+..+. .+...+..++++| ++..+ ++-.
T Consensus 79 ~L~v~D~g~~~~~~~~i~~~d~~tg~---------------~~~~~~~~~~~~~~~~~~~~v~vd~---~~g~~yvtd~~ 140 (343)
T 2qe8_A 79 IVWMLDNGNQSKSVPKLVAWDTLNNQ---------------LSRVIYLPPPITLSNSFVNDLAVDL---IHNFVYISDPA 140 (343)
T ss_dssp EEEEEECHHHHTSCCEEEEEETTTTE---------------EEEEEECCTTTSCTTCCCCEEEEET---TTTEEEEEECC
T ss_pred cEEEEcCCCCcCCCCeEEEEECCCCe---------------EEEEEECChhhcccccccceEEEec---CCCEEEEEcCc
Confidence 555543 3 4789999987432 222221 2335678999998 65544 4444
Q ss_pred --cCCcEEEEEcCCCceEEEeccCCc----------------------------eeEEEEeeecCCCCCcEEEEEecCCe
Q 001391 155 --SDNSIRVWDISNSSIILEVHSPER----------------------------CLLYSMKLWGDNLEALRIASGTIYNE 204 (1088)
Q Consensus 155 --~Dg~V~iWd~~~~~~~~~~~~~~~----------------------------~~~~s~~~~~~s~~~~~l~sg~~dg~ 204 (1088)
.++.|.+||+.+++....+..+.. .....+++ ++++..|+.+...+.
T Consensus 141 ~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~---s~dg~~ly~~~~~~~ 217 (343)
T 2qe8_A 141 PDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVL---DAENEWLYLSPMHST 217 (343)
T ss_dssp SGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEE---CTTSCEEEEEESSCS
T ss_pred cCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEe---ccCCCEEEEEeCCCC
Confidence 578999999998877665533100 01233444 567766666655543
Q ss_pred EEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee--eEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEE
Q 001391 205 IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN--LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARI 282 (1088)
Q Consensus 205 I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~--~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~i 282 (1088)
++|.+.+...... . . ...+. .....++.+...+++++++|..+++...++.|.+
T Consensus 218 -~l~~~~~~~~~~~-----------~-~-----------~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~ 273 (343)
T 2qe8_A 218 -SMYRIKSADLSNL-----------Q-L-----------TDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGV 273 (343)
T ss_dssp -EEEEEEHHHHTCT-----------T-C-----------CHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEE
T ss_pred -eEEEEEHHHhcCC-----------C-C-----------ChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEE
Confidence 3444331000000 0 0 00000 0012244456678999999999999999999999
Q ss_pred EEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEE
Q 001391 283 WEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVW 333 (1088)
Q Consensus 283 Wd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vW 333 (1088)
||..+++. ..+ ....+...+.+++|. +.++++.+..+.+.+|
T Consensus 274 ~d~~~G~~------~~~---~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 274 ITSADRAY------KLL---VTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp EETTTTEE------EEE---EECGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred EECCCCCE------EEE---EECCceecCCeeEECCCCcEEEEeCcccccccc
Confidence 99844321 111 111234568889996 4566666655444333
No 241
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.15 E-value=0.00024 Score=75.28 Aligned_cols=195 Identities=9% Similarity=-0.020 Sum_probs=129.3
Q ss_pred eEEEEEeccCCCCCCCCEEEEEe---CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECC
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGS---GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~---d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd 96 (1088)
...++|+ |+ +.+.++.. ++.|+++|+.+++.++++.........++++. .+ ..+++.+.+
T Consensus 23 ~~Gl~~~--~d----g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~-------g~----~lyv~t~~~ 85 (266)
T 2iwa_A 23 TQGLVYA--EN----DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL-------NE----KLYQVVWLK 85 (266)
T ss_dssp EEEEEEC--ST----TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-------TT----EEEEEETTC
T ss_pred cccEEEe--CC----CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe-------CC----EEEEEEecC
Confidence 4689999 87 54444432 38999999999999999876444334566665 33 155566679
Q ss_pred CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccC
Q 001391 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP 176 (1088)
Q Consensus 97 ~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~ 176 (1088)
+.+.++|..+ ++.+.++..-.. ....+++ |++.|+++..++.|.++|..+.+.+..+.-.
T Consensus 86 ~~v~viD~~t---------------~~v~~~i~~g~~--~g~glt~---Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg 145 (266)
T 2iwa_A 86 NIGFIYDRRT---------------LSNIKNFTHQMK--DGWGLAT---DGKILYGSDGTSILYEIDPHTFKLIKKHNVK 145 (266)
T ss_dssp SEEEEEETTT---------------TEEEEEEECCSS--SCCEEEE---CSSSEEEECSSSEEEEECTTTCCEEEEEECE
T ss_pred CEEEEEECCC---------------CcEEEEEECCCC--CeEEEEE---CCCEEEEECCCCeEEEEECCCCcEEEEEEEC
Confidence 9999999875 344555532111 1233666 7776666667899999999999888877633
Q ss_pred Cc--e--eEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE
Q 001391 177 ER--C--LLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1088)
Q Consensus 177 ~~--~--~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1088)
.. . ....+.+. ++.+.+....++.|.+-|.. +++.+..+
T Consensus 146 ~~~~p~~~~nele~~----dg~lyvn~~~~~~V~vID~~---------------------------------tg~V~~~I 188 (266)
T 2iwa_A 146 YNGHRVIRLNELEYI----NGEVWANIWQTDCIARISAK---------------------------------DGTLLGWI 188 (266)
T ss_dssp ETTEECCCEEEEEEE----TTEEEEEETTSSEEEEEETT---------------------------------TCCEEEEE
T ss_pred CCCcccccceeEEEE----CCEEEEecCCCCeEEEEECC---------------------------------CCcEEEEE
Confidence 21 1 23344442 45455555567899999998 44444444
Q ss_pred eCC-------------CCCEEEEEEcCCCCEE-EEEECCCcEEEEEcCCC
Q 001391 253 VGH-------------EGSIFRIEWSSCGSKL-VSVSDDRSARIWEVRAE 288 (1088)
Q Consensus 253 ~gh-------------~~~V~~v~~sp~g~~l-~s~s~Dg~v~iWd~~~~ 288 (1088)
.-. .....+|+|+|+++.+ +++.....+..-++...
T Consensus 189 ~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 189 LLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp ECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred ECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 321 1467899999998755 55667788888887654
No 242
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.15 E-value=0.00073 Score=76.22 Aligned_cols=204 Identities=14% Similarity=0.134 Sum_probs=127.7
Q ss_pred CCEEEEEe--CCeEEEEECCCC----eeEEEEe---ee---CCcceEEEEecccccccCCCccceeeEEEEECC------
Q 001391 35 LPFLLAGS--GSQVLLYDLEAG----TLIRPFQ---VF---HGIRLHGISCNFINCTEGSVSTRVTFEVALFGE------ 96 (1088)
Q Consensus 35 ~~~laag~--d~~I~vwd~~tg----~~~~~~~---~~---~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd------ 96 (1088)
+++|.+.. ++.|.|+|+.+. ++++++. .+ ...+-|.+.++ |+| .++.+.|+
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~-------pdG----i~Vs~~g~~~g~~~ 163 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCG-------PDA----IYISALGNEEGEGP 163 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEEC-------SSC----EEEEEEEETTSCSC
T ss_pred CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeEC-------CCe----EEEEcCCCcCCCCC
Confidence 77777765 589999999765 6777773 11 11246788888 786 66766665
Q ss_pred CEEEEEEeccCCCCCCCCCCccccccceeeeccC--CC-CcEEEEEEecccCCCCEEEEEE-------------------
Q 001391 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR--LS-HWVFDVCFLKVCNGNRSLAIGC------------------- 154 (1088)
Q Consensus 97 ~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~--h~-~~I~~v~f~p~~~d~~~lasgs------------------- 154 (1088)
+.|.++|.++ ++.+.+... .. .--+++-|+| +++.+++..
T Consensus 164 g~v~vlD~~T---------------~~v~~~~~~~~~~~~~~Yd~~~~p---~~~~mvsS~wg~p~~~~~g~~~~~~~~~ 225 (462)
T 2ece_A 164 GGILMLDHYS---------------FEPLGKWEIDRGDQYLAYDFWWNL---PNEVLVSSEWAVPNTIEDGLKLEHLKDR 225 (462)
T ss_dssp CEEEEECTTT---------------CCEEEECCSBCTTCCCCCCEEEET---TTTEEEECBCCCHHHHTTCCCTTTHHHH
T ss_pred CeEEEEECCC---------------CeEEEEEccCCCCccccceEEECC---CCCEEEEccCcCccccccccchhhhhhc
Confidence 7899999875 334444431 22 2235688899 999888773
Q ss_pred cCCcEEEEEcCCCceEEEeccC-CceeEEEEeeecCCCCCcEEEEEe------cCCeEEEEEeccCccccCCCCCCCccC
Q 001391 155 SDNSIRVWDISNSSIILEVHSP-ERCLLYSMKLWGDNLEALRIASGT------IYNEIIVWKVDWEHVAPLLNSPEGNHA 227 (1088)
Q Consensus 155 ~Dg~V~iWd~~~~~~~~~~~~~-~~~~~~s~~~~~~s~~~~~l~sg~------~dg~I~vwd~~~~~~~~~~~~~~~~s~ 227 (1088)
.+.+|.+||+.+++.+.++..+ .......+.+ .++|++.+++.+. .+++|.+|....++..
T Consensus 226 ~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f-~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~----------- 293 (462)
T 2ece_A 226 YGNRIHFWDLRKRKRIHSLTLGEENRMALELRP-LHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWN----------- 293 (462)
T ss_dssp SCCEEEEEETTTTEEEEEEESCTTEEEEEEEEE-CSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEE-----------
T ss_pred cCCEEEEEECCCCcEeeEEecCCCCCccceeEe-eECCCCCEEEEEEeeeccCCCceEEEEEecCCcee-----------
Confidence 3789999999999888888764 3333334443 2367888877766 4678988877611000
Q ss_pred CCCCCCCceeEecccccceeeeEEEe-------CCCCCEEEEEEcCCCCEEEEEEC-CCcEEEEEcCCC
Q 001391 228 HGSSSDFKCFKLQDQQHTAVNLFRLV-------GHEGSIFRIEWSSCGSKLVSVSD-DRSARIWEVRAE 288 (1088)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------gh~~~V~~v~~sp~g~~l~s~s~-Dg~v~iWd~~~~ 288 (1088)
..++.+.. .......+. +-......|.++|||++|..+.. .+.|.++|+...
T Consensus 294 --------~~~vIdi~-~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 294 --------AEKVIEIP-AEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp --------EEEEEEEC-CEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSST
T ss_pred --------EEEEEeCC-CccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 00000000 000000000 00245778999999999866554 689999999743
No 243
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.09 E-value=0.0024 Score=68.19 Aligned_cols=248 Identities=10% Similarity=-0.021 Sum_probs=141.3
Q ss_pred CEEEEEeCCeEEEEECCCCeeE-----EEEeeeCCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCC
Q 001391 36 PFLLAGSGSQVLLYDLEAGTLI-----RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELS 109 (1088)
Q Consensus 36 ~~laag~d~~I~vwd~~tg~~~-----~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~ 109 (1088)
++|+.+..+.|+.+++...... ..+.... ..+++++++ ++++ .+.++ .+++.|..+++....
T Consensus 2 ~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~-~~~~gi~~d-------~~~~---~ly~~d~~~~~I~~~~~~g~~- 69 (267)
T 1npe_A 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPA-KVIIGLAFD-------CVDK---VVYWTDISEPSIGRASLHGGE- 69 (267)
T ss_dssp EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEE-EEEEEEEEE-------TTTT---EEEEEETTTTEEEEEESSSCC-
T ss_pred cEEEEEcCCeEEEEEecCcccccccceeeecCCC-CcEEEEEEe-------cCCC---EEEEEECCCCEEEEEecCCCC-
Confidence 3555555568999998765321 1222222 258999998 5432 44444 347899999986321
Q ss_pred CCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEE-EcCCcEEEEEcCCCceEEEeccCCceeEEEEeeec
Q 001391 110 PNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWG 188 (1088)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg-s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~ 188 (1088)
. ...+.........+++.| ++..|+.+ ...+.|.++++............ ......+++
T Consensus 70 ------------~--~~~~~~~~~~p~~ia~d~---~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-~~~P~~i~v-- 129 (267)
T 1npe_A 70 ------------P--TTIIRQDLGSPEGIALDH---LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG-LVNPRGIVT-- 129 (267)
T ss_dssp ------------C--EEEECTTCCCEEEEEEET---TTTEEEEEETTTTEEEEEETTSCSCEEEECSS-CSSEEEEEE--
T ss_pred ------------c--EEEEECCCCCccEEEEEe---cCCeEEEEECCCCEEEEEEcCCCCEEEEEECC-CCCccEEEE--
Confidence 1 111122224678999998 76655555 45678999998754332222211 112234444
Q ss_pred CCCCCcEE-EEEec--CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE-eCCCCCEEEEEE
Q 001391 189 DNLEALRI-ASGTI--YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEW 264 (1088)
Q Consensus 189 ~s~~~~~l-~sg~~--dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~v~~ 264 (1088)
++++..| ++... .+.|..+++. . .....+ .........+++
T Consensus 130 -d~~~g~lyv~~~~~~~~~I~~~~~d---------------------------------g-~~~~~~~~~~~~~P~gia~ 174 (267)
T 1npe_A 130 -DPVRGNLYWTDWNRDNPKIETSHMD---------------------------------G-TNRRILAQDNLGLPNGLTF 174 (267)
T ss_dssp -ETTTTEEEEEECCSSSCEEEEEETT---------------------------------S-CCCEEEECTTCSCEEEEEE
T ss_pred -eeCCCEEEEEECCCCCcEEEEEecC---------------------------------C-CCcEEEEECCCCCCcEEEE
Confidence 3433344 33322 3677777765 1 111111 123356889999
Q ss_pred cCCCCEE-EEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEE-eCCCcEEEEcC-CCceeE
Q 001391 265 SSCGSKL-VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITA-GEDCTCRVWGS-DGKQLK 341 (1088)
Q Consensus 265 sp~g~~l-~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg-~~Dg~i~vWd~-~~~~~~ 341 (1088)
+|++++| ++-...+.|..++...... .. ...+ ......++..+..++.+ ...+.|.++|. +++.+.
T Consensus 175 d~~~~~lyv~d~~~~~I~~~~~~g~~~------~~----~~~~-~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~ 243 (267)
T 1npe_A 175 DAFSSQLCWVDAGTHRAECLNPAQPGR------RK----VLEG-LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMD 243 (267)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTEEEE------EE----EEEC-CCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred cCCCCEEEEEECCCCEEEEEecCCCce------EE----EecC-CCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceE
Confidence 9987766 4555668899999876321 11 1111 12334566665555444 45689999999 688888
Q ss_pred EEcccCCCCeEEEEEcCCCC
Q 001391 342 MIKEHIGRGIWRCLYDSLSS 361 (1088)
Q Consensus 342 ~~~~h~~~~V~~l~~~~dg~ 361 (1088)
.+........+.+++.|++.
T Consensus 244 ~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 244 TFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EECCSSCCCCCCEEEECSCC
T ss_pred EEccccccccceeeecCccC
Confidence 87644321367788888763
No 244
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.08 E-value=0.00031 Score=86.02 Aligned_cols=166 Identities=10% Similarity=-0.005 Sum_probs=90.9
Q ss_pred CCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC------CCEEEEEEeccC
Q 001391 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG------EKRVKLFELNFE 107 (1088)
Q Consensus 35 ~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g------d~~v~iw~l~~~ 107 (1088)
+..|+.++ ++.|..+|.++|+++.++..........+..+|. ..++ .+++..+ ++.|..+|.++.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~----v~~~----~v~vg~~~~~~~~~g~v~a~D~~tG 188 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPR----VVKG----KVIIGNGGAEYGVRGFVSAYDADTG 188 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCE----EETT----EEEECCBCTTTCCBCEEEEEETTTC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCE----EECC----EEEEeCCCCCcCCCCEEEEEECCCC
Confidence 34566666 7999999999999998887632211111222211 0122 3333322 367888877653
Q ss_pred CCC----CCCCCCccccccc------------eeeeccCCCCcEEEEEEecccCCCCEEEEEEcCC--------------
Q 001391 108 LSP----NSQYQPETCVNLS------------LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN-------------- 157 (1088)
Q Consensus 108 ~~~----~~~~~~~~~~~~~------------~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg-------------- 157 (1088)
... .....|....... .+....++......+++.| +..+++.+..++
T Consensus 189 ~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~---~~~~vy~~~~~g~~w~~~~~~~~~gd 265 (668)
T 1kv9_A 189 KLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP---ELDLLYVGTGNGSPWNREVRSPGGGD 265 (668)
T ss_dssp CEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET---TTTEEEEECCCEESSCHHHHSTTCCC
T ss_pred cEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC---CCCEEEEeCCCCCccccCCCCCCCCC
Confidence 300 0000000000000 0000001112223578888 788888887665
Q ss_pred -----cEEEEEcCCCceEEEeccCC----------ceeEEEEeeecCCCCCc---EEEEEecCCeEEEEEeccCccc
Q 001391 158 -----SIRVWDISNSSIILEVHSPE----------RCLLYSMKLWGDNLEAL---RIASGTIYNEIIVWKVDWEHVA 216 (1088)
Q Consensus 158 -----~V~iWd~~~~~~~~~~~~~~----------~~~~~s~~~~~~s~~~~---~l~sg~~dg~I~vwd~~~~~~~ 216 (1088)
.|.-+|..+++.+-+++... ...+..+. .++. .++.++.+|.++++|..+++..
T Consensus 266 ~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~-----~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 266 NLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELN-----IDGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp CTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE-----ETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred ceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEec-----cCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 39999999999987765321 11122222 1343 6888999999999999876644
No 245
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.04 E-value=0.00038 Score=72.84 Aligned_cols=182 Identities=12% Similarity=0.039 Sum_probs=114.3
Q ss_pred eEEEEEeccCCCCCCCCEEEE-EeCC--eEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECC
Q 001391 20 ISALCFVHLPSHLSSLPFLLA-GSGS--QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laa-g~d~--~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd 96 (1088)
..+|.|+ . +.+..+ |.+| .|+++|+++|+.++++......--.++++. .+ ..+.+.+.+
T Consensus 45 tqGL~~~--~-----~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~-------g~----~ly~ltw~~ 106 (262)
T 3nol_A 45 TEGFFYR--N-----GYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW-------KD----KIVGLTWKN 106 (262)
T ss_dssp EEEEEEE--T-----TEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE-------TT----EEEEEESSS
T ss_pred cceEEEE--C-----CEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe-------CC----EEEEEEeeC
Confidence 3567777 3 233333 4444 999999999999999886443222345554 33 256666779
Q ss_pred CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccC
Q 001391 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP 176 (1088)
Q Consensus 97 ~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~ 176 (1088)
+.+.++|.++ ++.+.++..-. ....+.+ |++.|+....++.|.++|..+.+.+.++...
T Consensus 107 ~~v~v~D~~t---------------~~~~~ti~~~~---eG~glt~---dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~ 165 (262)
T 3nol_A 107 GLGFVWNIRN---------------LRQVRSFNYDG---EGWGLTH---NDQYLIMSDGTPVLRFLDPESLTPVRTITVT 165 (262)
T ss_dssp SEEEEEETTT---------------CCEEEEEECSS---CCCCEEE---CSSCEEECCSSSEEEEECTTTCSEEEEEECE
T ss_pred CEEEEEECcc---------------CcEEEEEECCC---CceEEec---CCCEEEEECCCCeEEEEcCCCCeEEEEEEec
Confidence 9999999885 44555554322 1223335 7776666656788999999999988887642
Q ss_pred C--c--eeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE
Q 001391 177 E--R--CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1088)
Q Consensus 177 ~--~--~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1088)
. + ..+..+.+ .++.+.+..-.++.|.+.|..+++ .+..+
T Consensus 166 ~~g~~~~~lNELe~----~~G~lyan~w~~~~I~vIDp~tG~---------------------------------V~~~I 208 (262)
T 3nol_A 166 AHGEELPELNELEW----VDGEIFANVWQTNKIVRIDPETGK---------------------------------VTGII 208 (262)
T ss_dssp ETTEECCCEEEEEE----ETTEEEEEETTSSEEEEECTTTCB---------------------------------EEEEE
T ss_pred cCCccccccceeEE----ECCEEEEEEccCCeEEEEECCCCc---------------------------------EEEEE
Confidence 1 1 11222333 246555555567889999988433 33222
Q ss_pred eC------------CCCCEEEEEEcCCCCEEEEEECC
Q 001391 253 VG------------HEGSIFRIEWSSCGSKLVSVSDD 277 (1088)
Q Consensus 253 ~g------------h~~~V~~v~~sp~g~~l~s~s~D 277 (1088)
.- -....++|+|+|+++.|...+..
T Consensus 209 d~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 209 DLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp ECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred ECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 21 12457899999998887776653
No 246
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.03 E-value=0.00081 Score=71.18 Aligned_cols=206 Identities=9% Similarity=0.010 Sum_probs=131.2
Q ss_pred cceeeeccCCC--CcEEEEEEecccCCCCEEEEEEc--CCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEE
Q 001391 122 LSLVQSLPRLS--HWVFDVCFLKVCNGNRSLAIGCS--DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (1088)
Q Consensus 122 ~~~~~~l~~h~--~~I~~v~f~p~~~d~~~lasgs~--Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~ 197 (1088)
.+.+.+++ |. .....++|+| ++.+.++.+. ++.|++.|+.+++.+.++..+.......+.+. .+.+.+
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~---dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~----g~~lyv 80 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAE---NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL----NEKLYQ 80 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECS---TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE----TTEEEE
T ss_pred ceEEEEEE-CCCCCCcccEEEeC---CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe----CCEEEE
Confidence 44555553 44 3468999998 8654444443 68999999999999988764433222233331 223344
Q ss_pred EEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC
Q 001391 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277 (1088)
Q Consensus 198 sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D 277 (1088)
+.-.++.+.++|.. +.+.+.++.-.... ...+++||+.++.+..+
T Consensus 81 ~t~~~~~v~viD~~---------------------------------t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs 125 (266)
T 2iwa_A 81 VVWLKNIGFIYDRR---------------------------------TLSNIKNFTHQMKD--GWGLATDGKILYGSDGT 125 (266)
T ss_dssp EETTCSEEEEEETT---------------------------------TTEEEEEEECCSSS--CCEEEECSSSEEEECSS
T ss_pred EEecCCEEEEEECC---------------------------------CCcEEEEEECCCCC--eEEEEECCCEEEEECCC
Confidence 44567899999988 56666666422111 23355678777777678
Q ss_pred CcEEEEEcCCCcccCCCCceeeeceeeeccC---cceEEEEECCCEEEE-EeCCCcEEEEcC-CCceeEEEccc------
Q 001391 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHN---ARVWDCCLTDSFIIT-AGEDCTCRVWGS-DGKQLKMIKEH------ 346 (1088)
Q Consensus 278 g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~---~~I~~v~~~~~~l~s-g~~Dg~i~vWd~-~~~~~~~~~~h------ 346 (1088)
+.|.++|..+.+. ...+. ...+. ..++.+.|.+..+.. ...++.|.+-|. +++.+..+...
T Consensus 126 ~~l~viD~~t~~v-----~~~I~---Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~ 197 (266)
T 2iwa_A 126 SILYEIDPHTFKL-----IKKHN---VKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKL 197 (266)
T ss_dssp SEEEEECTTTCCE-----EEEEE---CEETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHH
T ss_pred CeEEEEECCCCcE-----EEEEE---ECCCCcccccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccc
Confidence 9999999988543 22221 11111 235666776545544 446789999999 88888877532
Q ss_pred ------CCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEcC
Q 001391 347 ------IGRGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 347 ------~~~~V~~l~~~~dg~-~l~tg~~Dg~I~iwd~~ 378 (1088)
.......|+++|+++ +++|+...+.+...++.
T Consensus 198 ~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 198 IDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp HHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred ccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 112368999999986 55666677888888873
No 247
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.01 E-value=8.4e-07 Score=100.67 Aligned_cols=180 Identities=8% Similarity=-0.069 Sum_probs=98.0
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCc
Q 001391 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (1088)
Q Consensus 146 d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~ 225 (1088)
++..|++++.|+.|+.||..+++.+.++.. .. +.+..+ ..++..+++++.||.|+.||..+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~-~~s~p~---~~~g~~~v~~s~dg~l~a~d~~t------------- 68 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DP-VLQVPT---HVEEPAFLPDPNDGSLYTLGSKN------------- 68 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CC-SCCCC--------CCEEECTTTCCEEEC-----------------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CC-ceecce---EcCCCEEEEeCCCCEEEEEECCC-------------
Confidence 667899999999999999999999877764 11 111111 24566777888999999999972
Q ss_pred cCCCCCCCCceeEecccccceeeeEEEeCCCC-CEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceee
Q 001391 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG-SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (1088)
Q Consensus 226 s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~-~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~ 304 (1088)
++.+.....+.. .+.+.-...++..+++++.|+.++.||..+++. +. .+
T Consensus 69 --------------------G~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~--------~w--~~ 118 (369)
T 2hz6_A 69 --------------------NEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEK--------QQ--TL 118 (369)
T ss_dssp ---------------------CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC------------------
T ss_pred --------------------CceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcE--------EE--Ee
Confidence 322222222111 000000001345677888899999999998753 11 22
Q ss_pred eccCcceEEEEECCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCC---CEEEEEeCCCCEEEEEcCC
Q 001391 305 YGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS---SLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 305 ~~h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg---~~l~tg~~Dg~I~iwd~~~ 379 (1088)
..+. .+. .+-.+..+++++.|+.++.||. +|+.+..+..+. ....++.++. ..+++++.||.+..||..+
T Consensus 119 ~~~~-~~~-~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t 192 (369)
T 2hz6_A 119 SSAF-ADS-LSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSES 192 (369)
T ss_dssp ----------------EEEEEEEEEEECCCSSSSSCCCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTT
T ss_pred cCCC-ccc-ccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCC
Confidence 2221 111 1114678899999999999999 787766654321 1223333432 4577789999999999853
No 248
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.00 E-value=0.00068 Score=81.21 Aligned_cols=46 Identities=20% Similarity=0.069 Sum_probs=31.9
Q ss_pred CCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCE
Q 001391 317 TDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSL 362 (1088)
Q Consensus 317 ~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~ 362 (1088)
.+.+++.++.||.++.||. +|+.+..+.......-..+.+..+|++
T Consensus 474 ~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~ 520 (571)
T 2ad6_A 474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ 520 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEE
Confidence 4778888999999999998 899998886543311112334466653
No 249
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.95 E-value=0.00095 Score=69.18 Aligned_cols=152 Identities=13% Similarity=0.084 Sum_probs=96.4
Q ss_pred eEEEEEeccCCCCCCCCEEEE-EeC--CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECC
Q 001391 20 ISALCFVHLPSHLSSLPFLLA-GSG--SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laa-g~d--~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd 96 (1088)
..+|.|+ ++ .+..+ |.. ..|+++|+++|+.+.++......--.++++. .+ ..+.+.+.+
T Consensus 23 tqGL~~~--~~-----~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-------~~----~ly~ltw~~ 84 (243)
T 3mbr_X 23 TEGLFYL--RG-----HLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-------RD----RLIQLTWRN 84 (243)
T ss_dssp EEEEEEE--TT-----EEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-------TT----EEEEEESSS
T ss_pred cccEEEE--CC-----EEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-------CC----EEEEEEeeC
Confidence 5588888 43 33333 332 5999999999999999887544223445554 33 255566679
Q ss_pred CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccC
Q 001391 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP 176 (1088)
Q Consensus 97 ~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~ 176 (1088)
+.+.+||.++ ++.+.++..-... +.++ + +++.|+....++.|.++|..+.+.+.++...
T Consensus 85 ~~v~v~D~~t---------------l~~~~ti~~~~~G-wglt--~---dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~ 143 (243)
T 3mbr_X 85 HEGFVYDLAT---------------LTPRARFRYPGEG-WALT--S---DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVT 143 (243)
T ss_dssp SEEEEEETTT---------------TEEEEEEECSSCC-CEEE--E---CSSCEEEECSSSEEEEECTTTCCEEEEEECE
T ss_pred CEEEEEECCc---------------CcEEEEEeCCCCc-eEEe--e---CCCEEEEECCCCeEEEEeCCCCeEEEEEEEc
Confidence 9999999875 4555555432211 3443 5 6676666666889999999999988877632
Q ss_pred Cc----eeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCc
Q 001391 177 ER----CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (1088)
Q Consensus 177 ~~----~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~ 214 (1088)
.. ..+..+.+ .++.+.+..-.+..|.+.|..+++
T Consensus 144 ~~g~~~~~lNeLe~----~~G~lyanvw~s~~I~vIDp~tG~ 181 (243)
T 3mbr_X 144 AGGRPLDNLNELEW----VNGELLANVWLTSRIARIDPASGK 181 (243)
T ss_dssp ETTEECCCEEEEEE----ETTEEEEEETTTTEEEEECTTTCB
T ss_pred cCCcccccceeeEE----eCCEEEEEECCCCeEEEEECCCCC
Confidence 11 11222332 245555444457788888888433
No 250
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.94 E-value=0.00035 Score=73.05 Aligned_cols=148 Identities=9% Similarity=0.038 Sum_probs=95.1
Q ss_pred eEEEEEeccCCCCCCCCEEEEEe--CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCC
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~--d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~ 97 (1088)
..+|.|+ . ..|..+. ++.|+++|+++|+.++++ .....--.++++. .+. .+++.+.++
T Consensus 57 tqGL~~~--~------~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~-------g~~----Ly~ltw~~~ 116 (268)
T 3nok_A 57 TQGLVFH--Q------GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD-------GER----LYQLTWTEG 116 (268)
T ss_dssp EEEEEEE--T------TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC-------SSC----EEEEESSSC
T ss_pred cceEEEE--C------CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe-------CCE----EEEEEccCC
Confidence 3477777 3 3333333 588999999999999988 4333222446655 332 666667799
Q ss_pred EEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCC
Q 001391 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE 177 (1088)
Q Consensus 98 ~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~ 177 (1088)
.+.+||.++ ++.+.++..-.. =+.++ + |++.|+....++.|.++|..+.+.+.++....
T Consensus 117 ~v~V~D~~T---------------l~~~~ti~~~~e-GwGLt--~---Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~ 175 (268)
T 3nok_A 117 LLFTWSGMP---------------PQRERTTRYSGE-GWGLC--Y---WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL 175 (268)
T ss_dssp EEEEEETTT---------------TEEEEEEECSSC-CCCEE--E---ETTEEEEECSSSEEEEECTTTCCEEEEEECEE
T ss_pred EEEEEECCc---------------CcEEEEEeCCCc-eeEEe--c---CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC
Confidence 999999885 455555543221 13444 5 77777777678999999999999888776322
Q ss_pred c--e--eEEEEeeecCCCCCcEEEEEecCCeEEEEEecc
Q 001391 178 R--C--LLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (1088)
Q Consensus 178 ~--~--~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~ 212 (1088)
. . .+..+.+ .++.+.+..-..+.|.+-|.++
T Consensus 176 ~g~~v~~lNeLe~----~dG~lyanvw~s~~I~vIDp~T 210 (268)
T 3nok_A 176 RGQPVELINELEC----ANGVIYANIWHSSDVLEIDPAT 210 (268)
T ss_dssp TTEECCCEEEEEE----ETTEEEEEETTCSEEEEECTTT
T ss_pred CCcccccccccEE----eCCEEEEEECCCCeEEEEeCCC
Confidence 1 1 1222333 2565555444678888888883
No 251
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.92 E-value=0.001 Score=69.55 Aligned_cols=193 Identities=10% Similarity=0.021 Sum_probs=120.4
Q ss_pred eeeeccCCC--CcEEEEEEecccCCCCEEEEEEcCC--cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEE-
Q 001391 124 LVQSLPRLS--HWVFDVCFLKVCNGNRSLAIGCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS- 198 (1088)
Q Consensus 124 ~~~~l~~h~--~~I~~v~f~p~~~d~~~lasgs~Dg--~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~s- 198 (1088)
.++.+ .|. .....+.|+ ++.+..+.+.+| .|+++|+.+++.+.++..+.....-.+.. ++..|..
T Consensus 33 vv~~~-phd~~~ftqGL~~~----~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~-----~g~~ly~l 102 (262)
T 3nol_A 33 IVHSY-PHDTKAFTEGFFYR----NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD-----WKDKIVGL 102 (262)
T ss_dssp EEEEE-ECCTTCEEEEEEEE----TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE-----ETTEEEEE
T ss_pred EEEEe-cCCCCcccceEEEE----CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE-----eCCEEEEE
Confidence 44444 343 345778886 456666677766 89999999999998887554322222333 2334444
Q ss_pred EecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCC
Q 001391 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR 278 (1088)
Q Consensus 199 g~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg 278 (1088)
.-.++.+.++|.. +.+.+.++.-.. ....++++++.|+.+..++
T Consensus 103 tw~~~~v~v~D~~---------------------------------t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~ 146 (262)
T 3nol_A 103 TWKNGLGFVWNIR---------------------------------NLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTP 146 (262)
T ss_dssp ESSSSEEEEEETT---------------------------------TCCEEEEEECSS---CCCCEEECSSCEEECCSSS
T ss_pred EeeCCEEEEEECc---------------------------------cCcEEEEEECCC---CceEEecCCCEEEEECCCC
Confidence 4458899999998 566666665322 2233345777776666678
Q ss_pred cEEEEEcCCCcccCCCCceeeeceeeeccC-cceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEccc---------
Q 001391 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHN-ARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEH--------- 346 (1088)
Q Consensus 279 ~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~-~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h--------- 346 (1088)
.|.++|..+.+. ...+.. ...+.. ..+..+.+. +.+.+....+..|.+.|. +|+.+..+...
T Consensus 147 ~i~~iDp~T~~v-----~~~I~V-~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~ 220 (262)
T 3nol_A 147 VLRFLDPESLTP-----VRTITV-TAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPL 220 (262)
T ss_dssp EEEEECTTTCSE-----EEEEEC-EETTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSC
T ss_pred eEEEEcCCCCeE-----EEEEEe-ccCCccccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccc
Confidence 899999988543 222220 111222 234456666 444444446889999999 88888776532
Q ss_pred --CCCCeEEEEEcCCCCEEEEEeC
Q 001391 347 --IGRGIWRCLYDSLSSLLVTAGF 368 (1088)
Q Consensus 347 --~~~~V~~l~~~~dg~~l~tg~~ 368 (1088)
.......||++|+++.|...|.
T Consensus 221 ~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 221 PSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp CSSCCCEEEEEEETTTTEEEEEET
T ss_pred cCcCCceEEEEEcCCCCEEEEECC
Confidence 1224688999999887777664
No 252
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.84 E-value=0.0013 Score=76.85 Aligned_cols=284 Identities=11% Similarity=0.032 Sum_probs=166.0
Q ss_pred CCeEEEEECCCCeeEEEEeeeCCc--------------------------------------ceEEEEecccccccCCCc
Q 001391 43 GSQVLLYDLEAGTLIRPFQVFHGI--------------------------------------RLHGISCNFINCTEGSVS 84 (1088)
Q Consensus 43 d~~I~vwd~~tg~~~~~~~~~~~~--------------------------------------~V~~i~~s~~~~~~~~d~ 84 (1088)
.|+|+||-+.+++++..+.+|... ..|..+.|.. .-.+||
T Consensus 24 ~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t--~g~~DG 101 (595)
T 1fwx_A 24 SGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFT--EGKYDG 101 (595)
T ss_dssp TCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEE--TTEEEE
T ss_pred CceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCC--CCCcCC
Confidence 499999999999999888765420 1122333310 001245
Q ss_pred cceeeEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceee--eccCCCCcEEEEEE-e-cccCCCCEEEEEEc----
Q 001391 85 TRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQ--SLPRLSHWVFDVCF-L-KVCNGNRSLAIGCS---- 155 (1088)
Q Consensus 85 ~~~~~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~--~l~~h~~~I~~v~f-~-p~~~d~~~lasgs~---- 155 (1088)
+ .+++... +.+|.+.|+.. ++..+ .++. ...+..+++ . | +++++++++.
T Consensus 102 ~---~lfVnd~~~~rVavIdl~t---------------~~~~~ii~ip~-g~~phg~~~~~~p---~~~~v~~~~~~~~p 159 (595)
T 1fwx_A 102 R---FLFMNDKANTRVARVRCDV---------------MKCDAILEIPN-AKGIHGLRPQKWP---RSNYVFCNGEDETP 159 (595)
T ss_dssp E---EEEEEETTTTEEEEEETTT---------------TEEEEEEECSS-CCSEEEEEECCSS---BCSEEEEEECSCEE
T ss_pred C---EEEEEcCCCCEEEEEECCC---------------ceEeeEEeCCC-CCCCcceeeeecC---CCcEEEEecccccc
Confidence 2 4444433 67899999885 33333 3332 234788888 4 8 9999888852
Q ss_pred --------------CCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecC---------------CeEE
Q 001391 156 --------------DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY---------------NEII 206 (1088)
Q Consensus 156 --------------Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d---------------g~I~ 206 (1088)
++.+.+.|.++.+...++.-+..... +++ ++++.++++.+.+ ..|.
T Consensus 160 ~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~--~~~---spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~ 234 (595)
T 1fwx_A 160 LVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDN--CDA---DYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIV 234 (595)
T ss_dssp SSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCC--EEE---CSSSSEEEEEESCTTCCSSHHHHTCCSEEEEE
T ss_pred cCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccc--eEE---CCCCCEEEEEecCcccCcchhhccccccceEE
Confidence 45799999999988888764222111 222 6788888887755 3477
Q ss_pred EEEeccCccccCCCCCCCccCCCCCCCCceeEecccccc-eee-eEEEeCCCCCEEEEEEcCCCCEEEEEE-CCCcEEEE
Q 001391 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT-AVN-LFRLVGHEGSIFRIEWSSCGSKLVSVS-DDRSARIW 283 (1088)
Q Consensus 207 vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~-~~~~~gh~~~V~~v~~sp~g~~l~s~s-~Dg~v~iW 283 (1088)
+.|+...+. ...+|+...-+.+.+.+.... +.. +..+.. .....++.++|||++++.++ .+.+|.++
T Consensus 235 V~~~~~~~~---------~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVi 304 (595)
T 1fwx_A 235 VFNIAEIEK---------AIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVL 304 (595)
T ss_dssp EEEHHHHHH---------HHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEE
T ss_pred EeeccceeE---------eccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEE
Confidence 777652211 111121111122444443320 222 333332 23567899999999876655 67899999
Q ss_pred EcCCCccc--C-CCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcC-C----------CceeEEEcccC
Q 001391 284 EVRAEYWK--D-SDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-D----------GKQLKMIKEHI 347 (1088)
Q Consensus 284 d~~~~~~~--~-~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~----------~~~~~~~~~h~ 347 (1088)
|+.+.+.. . -.....+. ....-....+.++|+ +...++...|+.|.+|++ . .+.+.++..|-
T Consensus 305 d~~~~~~~~~~~l~~~~~v~--~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~y 382 (595)
T 1fwx_A 305 DVTRFDAVFYENADPRSAVV--AEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHY 382 (595)
T ss_dssp EGGGHHHHHHSCCCGGGGEE--ECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSS
T ss_pred ECcccccccccccCcccceE--EEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccc
Confidence 99864210 0 00000111 112233567889998 534456778999999998 3 34566666554
Q ss_pred CCCe-----EEEEEcCCCCEEEEEeC
Q 001391 348 GRGI-----WRCLYDSLSSLLVTAGF 368 (1088)
Q Consensus 348 ~~~V-----~~l~~~~dg~~l~tg~~ 368 (1088)
. +- ..+.++|||++|++...
T Consensus 383 q-pGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 383 Q-PGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp C-EEEEEETTTTSTTCCSSEEEEEES
T ss_pred c-cccceeccceEeCCCCCEEEEcCC
Confidence 3 11 12245789999888764
No 253
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.83 E-value=0.0036 Score=64.87 Aligned_cols=194 Identities=12% Similarity=0.084 Sum_probs=122.3
Q ss_pred cceeeeccCCC--CcEEEEEEecccCCCCEEEEEEcC--CcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEE
Q 001391 122 LSLVQSLPRLS--HWVFDVCFLKVCNGNRSLAIGCSD--NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (1088)
Q Consensus 122 ~~~~~~l~~h~--~~I~~v~f~p~~~d~~~lasgs~D--g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~ 197 (1088)
.+.+..+ .|+ .....+.|++ +.+..+.+.+ ..|+.+|+.+++.+.++..+.....-.+... .+.+..
T Consensus 9 ~~v~~~~-phd~~~ftqGL~~~~----~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~----~~~ly~ 79 (243)
T 3mbr_X 9 YRVVKRY-PHDTTAFTEGLFYLR----GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW----RDRLIQ 79 (243)
T ss_dssp EEEEEEE-ECCTTCCEEEEEEET----TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE----TTEEEE
T ss_pred eEEEEEc-CCCCccccccEEEEC----CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe----CCEEEE
Confidence 3555666 454 4577899974 4555555554 4899999999999988875543222233331 233334
Q ss_pred EEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC
Q 001391 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277 (1088)
Q Consensus 198 sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D 277 (1088)
..-.++.+.++|.. +.+.+.++.-... =.+++ ++++.|+.+..+
T Consensus 80 ltw~~~~v~v~D~~---------------------------------tl~~~~ti~~~~~-Gwglt--~dg~~L~vSdgs 123 (243)
T 3mbr_X 80 LTWRNHEGFVYDLA---------------------------------TLTPRARFRYPGE-GWALT--SDDSHLYMSDGT 123 (243)
T ss_dssp EESSSSEEEEEETT---------------------------------TTEEEEEEECSSC-CCEEE--ECSSCEEEECSS
T ss_pred EEeeCCEEEEEECC---------------------------------cCcEEEEEeCCCC-ceEEe--eCCCEEEEECCC
Confidence 44568899999998 6666766663221 13343 567766666678
Q ss_pred CcEEEEEcCCCcccCCCCceeeeceeeeccC---cceEEEEECCCEEEE-EeCCCcEEEEcC-CCceeEEEccc------
Q 001391 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHN---ARVWDCCLTDSFIIT-AGEDCTCRVWGS-DGKQLKMIKEH------ 346 (1088)
Q Consensus 278 g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~---~~I~~v~~~~~~l~s-g~~Dg~i~vWd~-~~~~~~~~~~h------ 346 (1088)
+.|.++|..+.+. ...+ ....+. ..+..+.+.+..+.. ...+..|.+.|. +|+.+..+...
T Consensus 124 ~~l~~iDp~t~~~-----~~~I---~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~ 195 (243)
T 3mbr_X 124 AVIRKLDPDTLQQ-----VGSI---KVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDA 195 (243)
T ss_dssp SEEEEECTTTCCE-----EEEE---ECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTT
T ss_pred CeEEEEeCCCCeE-----EEEE---EEccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcccc
Confidence 8999999988543 2222 222222 234556666444444 446789999999 88888776522
Q ss_pred ------CCCCeEEEEEcCCCCEEEEEeC
Q 001391 347 ------IGRGIWRCLYDSLSSLLVTAGF 368 (1088)
Q Consensus 347 ------~~~~V~~l~~~~dg~~l~tg~~ 368 (1088)
.+.-...|+++|+++.|...|.
T Consensus 196 ~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 196 DALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred ccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 2234688999998877666664
No 254
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.76 E-value=0.0018 Score=67.70 Aligned_cols=191 Identities=7% Similarity=-0.002 Sum_probs=120.6
Q ss_pred ceeeeccCCC--CcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEe
Q 001391 123 SLVQSLPRLS--HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (1088)
Q Consensus 123 ~~~~~l~~h~--~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~ 200 (1088)
+.+..+ .|. .....+.|+ ++.+..+.+.+|.|+++|+.+++.+.++ .+.....-.+.+ . .+.+.+..-
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~----~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~---~-g~~Ly~ltw 113 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFH----QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLAS---D-GERLYQLTW 113 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEE----TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEE---C-SSCEEEEES
T ss_pred EEEEEE-cCCCccccceEEEE----CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEE---e-CCEEEEEEc
Confidence 344555 343 345788886 4566677788889999999999998877 443322222333 1 223334445
Q ss_pred cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcE
Q 001391 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280 (1088)
Q Consensus 201 ~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v 280 (1088)
.++.+.++|.. +.+.+.++.-- ..=.+++ ++++.|+.+..++.|
T Consensus 114 ~~~~v~V~D~~---------------------------------Tl~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l 157 (268)
T 3nok_A 114 TEGLLFTWSGM---------------------------------PPQRERTTRYS-GEGWGLC--YWNGKLVRSDGGTML 157 (268)
T ss_dssp SSCEEEEEETT---------------------------------TTEEEEEEECS-SCCCCEE--EETTEEEEECSSSEE
T ss_pred cCCEEEEEECC---------------------------------cCcEEEEEeCC-CceeEEe--cCCCEEEEECCCCEE
Confidence 68899999998 66666666532 2213333 577888777778999
Q ss_pred EEEEcCCCcccCCCCceeeeceeeeccCc---ceEEEEECCCEEE-EEeCCCcEEEEcC-CCceeEEEccc---------
Q 001391 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNA---RVWDCCLTDSFII-TAGEDCTCRVWGS-DGKQLKMIKEH--------- 346 (1088)
Q Consensus 281 ~iWd~~~~~~~~~~~~~~i~~~~~~~h~~---~I~~v~~~~~~l~-sg~~Dg~i~vWd~-~~~~~~~~~~h--------- 346 (1088)
.++|..+.+. ...+ ....+.. .+..+.|.+..|. ....+..|.+.|. +|+.+..+...
T Consensus 158 ~~iDp~T~~v-----~~~I---~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~ 229 (268)
T 3nok_A 158 TFHEPDGFAL-----VGAV---QVKLRGQPVELINELECANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQ 229 (268)
T ss_dssp EEECTTTCCE-----EEEE---ECEETTEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTT
T ss_pred EEEcCCCCeE-----EEEE---EeCCCCcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCccccccc
Confidence 9999888543 2222 2222222 3456667644444 4446889999999 88888776432
Q ss_pred ---CCCCeEEEEEcCCCCEEEEEe
Q 001391 347 ---IGRGIWRCLYDSLSSLLVTAG 367 (1088)
Q Consensus 347 ---~~~~V~~l~~~~dg~~l~tg~ 367 (1088)
...-...||++|+++.|...|
T Consensus 230 ~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 230 VTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp CCCTTCCEEEEEECTTTCCEEEEE
T ss_pred ccCcCCceEEEEEcCCCCEEEEeC
Confidence 122468899999876555554
No 255
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.76 E-value=0.0058 Score=73.10 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=33.2
Q ss_pred EECCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCC
Q 001391 315 CLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS 361 (1088)
Q Consensus 315 ~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~ 361 (1088)
...+.+++.++.|+.++.||. +|+.+.+++...+-...-+.+..+|+
T Consensus 481 ~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~ 528 (599)
T 1w6s_A 481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGT 528 (599)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred EecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCE
Confidence 334788888999999999999 89999888655431112244555665
No 256
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.72 E-value=0.0025 Score=77.86 Aligned_cols=51 Identities=6% Similarity=-0.010 Sum_probs=38.8
Q ss_pred CCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 327 DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 327 Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+|.|..||. +|+.+.....+. +.+...+...+.+++.++.||.++.||.++
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~~--~~~~~~~~t~gg~vf~g~~dg~l~a~d~~t 488 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYPT--HWNGGTLSTAGNLVFQGTAAGQMHAYSADK 488 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred cceEEEEeCCCCcEEEEccCCC--CCcCceeEeCCCEEEEECCcccchhhhhhc
Confidence 488999998 888887776443 344444555678899999999999999853
No 257
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.69 E-value=0.0042 Score=74.42 Aligned_cols=74 Identities=14% Similarity=0.084 Sum_probs=46.5
Q ss_pred CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceE--EEEECCCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEE
Q 001391 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW--DCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWR 353 (1088)
Q Consensus 277 Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~--~v~~~~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~ 353 (1088)
++.|.-||+.+++. +- .... ...++ .+...+.+++.|+.||.++.||. +|+.+.+++...+-...-
T Consensus 465 ~G~l~A~D~~tG~~--------~W--~~~~-~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P 533 (582)
T 1flg_A 465 VGSLRAMDPVSGKV--------VW--EHKE-HLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP 533 (582)
T ss_dssp SEEEEEECTTTCCE--------EE--EEEE-SSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred cceEEEEECCCCCE--------EE--EecC-CCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCc
Confidence 57788888887643 11 1111 11111 12334788889999999999999 899999887654411112
Q ss_pred EEEcCCCC
Q 001391 354 CLYDSLSS 361 (1088)
Q Consensus 354 l~~~~dg~ 361 (1088)
+.+..+|+
T Consensus 534 ~~y~~~G~ 541 (582)
T 1flg_A 534 ITWEQDGE 541 (582)
T ss_dssp EEEEETTE
T ss_pred eEEEECCE
Confidence 55666776
No 258
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.63 E-value=0.015 Score=69.59 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=36.7
Q ss_pred CCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 326 EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 326 ~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
.+|.+..||. +|+.+.++.... ++.+..+...+.+++.++.||.+..+|..+
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~~--~~~~~~~~t~gg~v~~g~~dg~l~a~D~~t 494 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEKF--AAWGGTLYTKGGLVWYATLDGYLKALDNKD 494 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTT
T ss_pred CCCeEEEEECCCCCEEEEecCCC--CccceeEEECCCEEEEEcCCCeEEEEECCC
Confidence 3578999998 788887765432 233333334456788899999999999853
No 259
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.62 E-value=0.0067 Score=66.73 Aligned_cols=112 Identities=11% Similarity=-0.036 Sum_probs=70.8
Q ss_pred CEEEEEEcCCCCEEEEE-ECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeC--------
Q 001391 258 SIFRIEWSSCGSKLVSV-SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE-------- 326 (1088)
Q Consensus 258 ~V~~v~~sp~g~~l~s~-s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~-------- 326 (1088)
....|+++|++++|..+ +..+.|..+++..... ...+.+. . ... ...+++. +.+.++...
T Consensus 186 ~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~---~~~~~~~--~---~~g-P~gi~~d~~G~l~va~~~~~~~~~~~ 256 (322)
T 2fp8_A 186 VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK---GTAEVLV--K---IPN-PGNIKRNADGHFWVSSSEELDGNMHG 256 (322)
T ss_dssp CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT---TCEEEEE--E---CSS-EEEEEECTTSCEEEEEEEETTSSTTS
T ss_pred cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC---CccceEE--e---CCC-CCCeEECCCCCEEEEecCcccccccC
Confidence 45679999999865544 5668899999875321 0011111 1 122 6677887 555555444
Q ss_pred --CCcEEEEcCCCceeEEEcccCC---CCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 327 --DCTCRVWGSDGKQLKMIKEHIG---RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 327 --Dg~i~vWd~~~~~~~~~~~h~~---~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
.+.|..++.+++.+..+....+ ..+.++++ .++++.++....+.|..+++..
T Consensus 257 ~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 257 RVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp CEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 4678888888888877765432 24666766 4666666666788899998853
No 260
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.59 E-value=0.0016 Score=79.63 Aligned_cols=116 Identities=17% Similarity=0.114 Sum_probs=71.6
Q ss_pred EEEEeccC-CCCCCCCEEEEEe-CC-----------eEEEEECCCCeeE--EEEeeeCCcceEEEEecccccccCCCccc
Q 001391 22 ALCFVHLP-SHLSSLPFLLAGS-GS-----------QVLLYDLEAGTLI--RPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (1088)
Q Consensus 22 ~v~fs~~p-d~~~~~~~laag~-d~-----------~I~vwd~~tg~~~--~~~~~~~~~~V~~i~~s~~~~~~~~d~~~ 86 (1088)
+.++. | + +++++.|. +. .+.+||..+++.. ..+........+++++. .++
T Consensus 190 ~~av~--~~~----g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~-------~~g-- 254 (656)
T 1k3i_A 190 AAAIE--PTS----GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMD-------GNG-- 254 (656)
T ss_dssp EEEEE--TTT----TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEEC-------TTS--
T ss_pred eEEEE--ecC----CEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCC-------CCC--
Confidence 55666 6 5 77777765 21 6899999887632 23322222223456666 666
Q ss_pred eeeEEEEEC--CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE-cC-----Cc
Q 001391 87 VTFEVALFG--EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SD-----NS 158 (1088)
Q Consensus 87 ~~~~la~~g--d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs-~D-----g~ 158 (1088)
.+++.+| +..+.+||..... ...+..+... .+-.++++.+ ++++++.|| .+ ..
T Consensus 255 --~lyv~GG~~~~~v~~yd~~t~~-------------W~~~~~~~~~-R~~~s~~~~~---dg~iyv~GG~~~~~~~~~~ 315 (656)
T 1k3i_A 255 --QIVVTGGNDAKKTSLYDSSSDS-------------WIPGPDMQVA-RGYQSSATMS---DGRVFTIGGSWSGGVFEKN 315 (656)
T ss_dssp --CEEEECSSSTTCEEEEEGGGTE-------------EEECCCCSSC-CSSCEEEECT---TSCEEEECCCCCSSSCCCC
T ss_pred --CEEEeCCCCCCceEEecCcCCc-------------eeECCCCCcc-ccccceEEec---CCeEEEEeCcccCCccccc
Confidence 6777766 4689999987532 3333333221 2224566677 889988888 34 57
Q ss_pred EEEEEcCCCceEE
Q 001391 159 IRVWDISNSSIIL 171 (1088)
Q Consensus 159 V~iWd~~~~~~~~ 171 (1088)
+.+||..+.+...
T Consensus 316 ~e~yd~~t~~W~~ 328 (656)
T 1k3i_A 316 GEVYSPSSKTWTS 328 (656)
T ss_dssp EEEEETTTTEEEE
T ss_pred ceEeCCCCCccee
Confidence 9999998776443
No 261
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.51 E-value=0.036 Score=60.34 Aligned_cols=247 Identities=9% Similarity=-0.003 Sum_probs=131.4
Q ss_pred CCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCC
Q 001391 53 AGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRL 131 (1088)
Q Consensus 53 tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h 131 (1088)
..+.+..|... ....+++++ +++ .++++. .++.|..|+.... ...... .
T Consensus 21 ~~~~~~~~p~~--~~pegia~~-------~~g----~lyv~d~~~~~I~~~d~~g~--------------~~~~~~---~ 70 (306)
T 2p4o_A 21 PAKIITSFPVN--TFLENLASA-------PDG----TIFVTNHEVGEIVSITPDGN--------------QQIHAT---V 70 (306)
T ss_dssp CEEEEEEECTT--CCEEEEEEC-------TTS----CEEEEETTTTEEEEECTTCC--------------EEEEEE---C
T ss_pred CceEeEeCCCC--CCcceEEEC-------CCC----CEEEEeCCCCeEEEECCCCc--------------eEEEEe---C
Confidence 34555555432 357889998 776 455554 5788888875521 111111 1
Q ss_pred CCcEEEEEEecccCCCCEEEEEEcCC--cEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEE
Q 001391 132 SHWVFDVCFLKVCNGNRSLAIGCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWK 209 (1088)
Q Consensus 132 ~~~I~~v~f~p~~~d~~~lasgs~Dg--~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd 209 (1088)
......+++.+ +++++++....+ .|..+|..+++.......+.......++. .+++..+++....+.|.++|
T Consensus 71 ~~~p~gia~~~---dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~---~~~~~~~v~d~~~g~i~~~d 144 (306)
T 2p4o_A 71 EGKVSGLAFTS---NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITP---LSDTQYLTADSYRGAIWLID 144 (306)
T ss_dssp SSEEEEEEECT---TSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEE---SSSSEEEEEETTTTEEEEEE
T ss_pred CCCceeEEEcC---CCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccc---cCCCcEEEEECCCCeEEEEe
Confidence 24688999999 888655543322 46667777776543332222212222332 23344444444578888888
Q ss_pred eccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEE-EEEECCCcEEEEEcCC-
Q 001391 210 VDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL-VSVSDDRSARIWEVRA- 287 (1088)
Q Consensus 210 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l-~s~s~Dg~v~iWd~~~- 287 (1088)
..+.+ .+++......... ...+.-.....+ +|++++| ++-+..+.|..+++..
T Consensus 145 ~~~~~----------------------~~v~~~~~~~~~~-~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~ 199 (306)
T 2p4o_A 145 VVQPS----------------------GSIWLEHPMLARS-NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDST 199 (306)
T ss_dssp TTTTE----------------------EEEEEECGGGSCS-STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTT
T ss_pred CCCCc----------------------EeEEEECCccccc-cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCC
Confidence 65110 0000000000000 000111234555 7888765 4555678899999875
Q ss_pred CcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEEEcCCCceeEE--EcccCCCCeEEEEEc---CCC
Q 001391 288 EYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKM--IKEHIGRGIWRCLYD---SLS 360 (1088)
Q Consensus 288 ~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~~~~~~~~--~~~h~~~~V~~l~~~---~dg 360 (1088)
+.. ...+.+. . ......+++. +.++++....+.|.+++.+|+.... +..... ..++++|. |++
T Consensus 200 g~~---~~~~~~~--~----~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~-~p~~~a~~g~~~d~ 269 (306)
T 2p4o_A 200 DKP---GEPEIFV--E----QTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVI-GSTAVAFGQTEGDC 269 (306)
T ss_dssp SCB---CCCEEEE--E----SCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCT-TEEEEEECCSTTTT
T ss_pred CCC---CccEEEe--c----cCCCCCeEECCCCCEEEEeCCCCeEEEECCCCCEEEEeecccccC-CceEEEEecccCCC
Confidence 211 0011111 1 1234456676 5666666667899999988766432 332222 58899998 887
Q ss_pred CEEEEEeCCC
Q 001391 361 SLLVTAGFDS 370 (1088)
Q Consensus 361 ~~l~tg~~Dg 370 (1088)
+.|+.+...+
T Consensus 270 ~~LyVt~~~~ 279 (306)
T 2p4o_A 270 TAIYVVTNGG 279 (306)
T ss_dssp TEEEEEECTT
T ss_pred CEEEEECCCC
Confidence 7776665543
No 262
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.49 E-value=0.042 Score=57.58 Aligned_cols=210 Identities=8% Similarity=0.006 Sum_probs=128.6
Q ss_pred eeccCCCCcEEEEEEecccCCCCEE-EEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCe
Q 001391 126 QSLPRLSHWVFDVCFLKVCNGNRSL-AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNE 204 (1088)
Q Consensus 126 ~~l~~h~~~I~~v~f~p~~~d~~~l-asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~ 204 (1088)
+.+.+-.+.+..+++.| +++.| ++...++.|...|.. ++.+..+.-....-.-.+++ .+++.++++.-.++.
T Consensus 20 ~~l~g~~~~lSGla~~~---~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~---~~~g~~~vs~E~~~~ 92 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSA---QSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEY---IGDNQFVISDERDYA 92 (255)
T ss_dssp EECTTCCSCEEEEEEET---TTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEE---CSTTEEEEEETTTTE
T ss_pred eECCCcccCcceeEEeC---CCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEE---eCCCEEEEEECCCCc
Confidence 45667777899999999 76654 456678889999987 88877764322122223343 355666666666788
Q ss_pred EEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE------eCCCCCEEEEEEcCCCCEEEEEECCC
Q 001391 205 IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL------VGHEGSIFRIEWSSCGSKLVSVSDDR 278 (1088)
Q Consensus 205 I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~------~gh~~~V~~v~~sp~g~~l~s~s~Dg 278 (1088)
+.++++.... .+ ..+... ...+....+|+|+|.++.|.++.+..
T Consensus 93 l~~~~v~~~~---------------------~i---------~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~ 142 (255)
T 3qqz_A 93 IYVISLTPNS---------------------EV---------KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN 142 (255)
T ss_dssp EEEEEECTTC---------------------CE---------EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS
T ss_pred EEEEEcCCCC---------------------ee---------eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC
Confidence 9998886111 00 011111 12345578999999998887777665
Q ss_pred cEEEEEcCCCcccCCCCceeeec--eeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcCCCceeEEEcccCC-----
Q 001391 279 SARIWEVRAEYWKDSDSIEEVGS--SVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSDGKQLKMIKEHIG----- 348 (1088)
Q Consensus 279 ~v~iWd~~~~~~~~~~~~~~i~~--~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~~----- 348 (1088)
...+|.+... . .......+.. .....+...+.+++++ +.+++...+...+.++|..|+.+..+.-..+
T Consensus 143 p~~i~~~~g~-~-~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~ 220 (255)
T 3qqz_A 143 PIEVYKVNGL-L-SSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLS 220 (255)
T ss_dssp SEEEEEEEST-T-CSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCS
T ss_pred CceEEEEccc-c-cCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcc
Confidence 6666666521 0 0000111110 0001123356788887 5677888888999999999887766543321
Q ss_pred ---CCeEEEEEcCCCCEEEEEeCCCCEEEE
Q 001391 349 ---RGIWRCLYDSLSSLLVTAGFDSAIKVH 375 (1088)
Q Consensus 349 ---~~V~~l~~~~dg~~l~tg~~Dg~I~iw 375 (1088)
..--.|+|.++|++.++ +.-+.+..+
T Consensus 221 ~~~~qpEGia~d~~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 221 HNIKQAEGVAMDASGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp SCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred cccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence 24679999999985555 555544443
No 263
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.46 E-value=0.12 Score=56.61 Aligned_cols=274 Identities=9% Similarity=-0.000 Sum_probs=142.8
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCe---eEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGT---LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~---~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~ 94 (1088)
..+.+|.|. ++ +..+++|..+.|. .....|+ .+..-.......+.+|.|. ++ ..++++
T Consensus 36 ~~~~~v~~~--~~----~~~~~~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~-------~~-----~~~~~g 96 (327)
T 2xbg_A 36 ATILDMSFI--DR----HHGWLVGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQ-------GN-----EGWIVG 96 (327)
T ss_dssp SCEEEEEES--SS----SCEEEEETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEE-------TT-----EEEEEE
T ss_pred CcEEEEEEC--CC----CcEEEEcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEec-------CC-----eEEEEE
Confidence 468899998 65 6778888777653 3333342 2211001123357888887 53 455555
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
..+. |+.-.... ...+.+.....+...+..+.+.+ ++..++.+ .++.|.. ....++.-..+.
T Consensus 97 ~~g~--i~~S~DgG-----------~tW~~~~~~~~~~~~~~~i~~~~---~~~~~~~~-~~g~v~~-S~DgG~tW~~~~ 158 (327)
T 2xbg_A 97 EPPI--MLHTTDGG-----------QSWSQIPLDPKLPGSPRLIKALG---NGSAEMIT-NVGAIYR-TKDSGKNWQALV 158 (327)
T ss_dssp ETTE--EEEESSTT-----------SSCEECCCCTTCSSCEEEEEEEE---TTEEEEEE-TTCCEEE-ESSTTSSEEEEE
T ss_pred CCCe--EEEECCCC-----------CCceECccccCCCCCeEEEEEEC---CCCEEEEe-CCccEEE-EcCCCCCCEEee
Confidence 4553 33332211 01233222223345578888877 77666655 4554322 223344433333
Q ss_pred cCCceeEEEEeeecCCCCCcEEEEEecCCeEE-EEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe
Q 001391 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEII-VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1088)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~-vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1088)
.+....++.+.+ .+++.+++.+. .|.+. -+|-. + ..-..+ -.
T Consensus 159 ~~~~~~~~~~~~---~~~~~~~~~g~-~G~~~~S~d~g-----G--------------------------~tW~~~--~~ 201 (327)
T 2xbg_A 159 QEAIGVMRNLNR---SPSGEYVAVSS-RGSFYSTWEPG-----Q--------------------------TAWEPH--NR 201 (327)
T ss_dssp CSCCCCEEEEEE---CTTSCEEEEET-TSSEEEEECTT-----C--------------------------SSCEEE--EC
T ss_pred cCCCcceEEEEE---cCCCcEEEEEC-CCcEEEEeCCC-----C--------------------------CceeEC--CC
Confidence 333334566655 35566666654 44433 33321 0 011111 12
Q ss_pred CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceee-eccCcceEEEEEC-CCEEEEEeCCCcEE
Q 001391 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL-YGHNARVWDCCLT-DSFIITAGEDCTCR 331 (1088)
Q Consensus 254 gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~-~~h~~~I~~v~~~-~~~l~sg~~Dg~i~ 331 (1088)
.....+..+.+.+++..+ .++.+|.+++++...++. -+.+. .- ..+...+.++.+. +..++.++.+|.+.
T Consensus 202 ~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~t-----W~~~~--~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~ 273 (327)
T 2xbg_A 202 TTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSEN-----WGELL--SPLRRNSVGFLDLAYRTPNEVWLAGGAGALL 273 (327)
T ss_dssp CSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEE-----ECCCB--CTTSSCCSCEEEEEESSSSCEEEEESTTCEE
T ss_pred CCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCe-----eEecc--CCcccCCcceEEEEecCCCEEEEEeCCCeEE
Confidence 345678899999988755 455678877765332211 01111 00 1123457888887 44555556678774
Q ss_pred EEcC-CCceeEEEcc---cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 001391 332 VWGS-DGKQLKMIKE---HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 332 vWd~-~~~~~~~~~~---h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd 376 (1088)
+.. .|+.-..+.. ... .+.++.|.+++ .++.++.+|.|.-++
T Consensus 274 -~S~DgG~tW~~~~~~~~~~~-~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 274 -CSQDGGQTWQQDVDVKKVPS-NFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp -EESSTTSSCEECGGGTTSSS-CCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred -EeCCCCcccEEcCccCCCCC-CeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 344 4555554442 223 47888887554 467778899766554
No 264
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.33 E-value=0.19 Score=59.95 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=36.2
Q ss_pred CCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 327 DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 327 Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+|.|..||+ +|+.+.+..... +++.-.+...+.+++.|+.||.++.+|.++
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~g~~dg~l~A~D~~t 516 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKS 516 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTT
T ss_pred cceEEEEECCCCCEEEEecCCC--CCcccceEeCCCEEEEECCCCcEEEEECCC
Confidence 688999998 788887765432 233322233466788899999999999853
No 265
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.29 E-value=0.23 Score=52.50 Aligned_cols=194 Identities=8% Similarity=-0.079 Sum_probs=112.0
Q ss_pred CcEEEEEEecccCCCCEEEEE-EcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCC-CcEEEEEecCCeEEEEEe
Q 001391 133 HWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE-ALRIASGTIYNEIIVWKV 210 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasg-s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~-~~~l~sg~~dg~I~vwd~ 210 (1088)
..+..++++| +++.|+.+ ..++.|..++.........+... ......+++ +++ +.+.++....+.|.++++
T Consensus 36 ~~~~gi~~d~---~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~-~~~p~~ia~---d~~~~~lyv~d~~~~~I~~~~~ 108 (267)
T 1npe_A 36 KVIIGLAFDC---VDKVVYWTDISEPSIGRASLHGGEPTTIIRQD-LGSPEGIAL---DHLGRTIFWTDSQLDRIEVAKM 108 (267)
T ss_dssp EEEEEEEEET---TTTEEEEEETTTTEEEEEESSSCCCEEEECTT-CCCEEEEEE---ETTTTEEEEEETTTTEEEEEET
T ss_pred CcEEEEEEec---CCCEEEEEECCCCEEEEEecCCCCcEEEEECC-CCCccEEEE---EecCCeEEEEECCCCEEEEEEc
Confidence 4578999998 76655554 45789999999766543333221 112334444 343 445555556778888887
Q ss_pred ccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC---CCcEEEEEcCC
Q 001391 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD---DRSARIWEVRA 287 (1088)
Q Consensus 211 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~---Dg~v~iWd~~~ 287 (1088)
. .................++++|++..|..+.. .+.|..+++..
T Consensus 109 ~---------------------------------g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg 155 (267)
T 1npe_A 109 D---------------------------------GTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG 155 (267)
T ss_dssp T---------------------------------SCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred C---------------------------------CCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC
Confidence 6 11111111222246789999997666555443 36788888764
Q ss_pred CcccCCCCceeeeceeeeccCcceEEEEEC--CCEE-EEEeCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEE
Q 001391 288 EYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFI-ITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLV 364 (1088)
Q Consensus 288 ~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l-~sg~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~ 364 (1088)
... +.+ ..........++++ +..| ++-...+.|.+++.++.....+..... ....+++. ++.+++
T Consensus 156 ~~~------~~~----~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~-~P~gi~~d-~~~lyv 223 (267)
T 1npe_A 156 TNR------RIL----AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY-GKNLYY 223 (267)
T ss_dssp CCC------EEE----ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE-TTEEEE
T ss_pred CCc------EEE----EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCC-CceEEEEe-CCEEEE
Confidence 321 111 11222356788886 3454 555566899999996654443322222 34677765 344444
Q ss_pred EEeCCCCEEEEEcC
Q 001391 365 TAGFDSAIKVHQFQ 378 (1088)
Q Consensus 365 tg~~Dg~I~iwd~~ 378 (1088)
+....+.|..++..
T Consensus 224 a~~~~~~v~~~d~~ 237 (267)
T 1npe_A 224 TDWKTNSVIAMDLA 237 (267)
T ss_dssp EETTTTEEEEEETT
T ss_pred EECCCCeEEEEeCC
Confidence 44456888888875
No 266
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.27 E-value=0.11 Score=62.04 Aligned_cols=52 Identities=12% Similarity=0.187 Sum_probs=35.6
Q ss_pred CCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 326 EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 326 ~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
.+|.+..||+ +|+.+.+..... +.++-.+...+.+++.++.||.++.+|.++
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagg~vf~gt~dg~l~A~D~~t 503 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKMERF--AVWGGTMATAGDLVFYGTLDGYLKARDSDT 503 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTT
T ss_pred CcCeEEEEECCCCCEEeEecCCC--CccCcceEecCCEEEEECCCCeEEEEECCC
Confidence 4578999998 788877664221 233222333566788899999999999853
No 267
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.23 E-value=0.35 Score=52.65 Aligned_cols=236 Identities=9% Similarity=-0.040 Sum_probs=129.1
Q ss_pred CEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCC
Q 001391 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQY 114 (1088)
Q Consensus 36 ~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~ 114 (1088)
.+|+.+....|+..|+.+.+....+... ....+++|. ++++ .+..+- .++.|..+++..... +
T Consensus 2 ~~ll~~~~~~I~~i~~~~~~~~~~~~~~--~~p~g~~~d-------~~~~---~ly~~D~~~~~I~~~~~~g~~~-~--- 65 (316)
T 1ijq_A 2 AYLFFTNRHEVRKMTLDRSEYTSLIPNL--RNVVALDTE-------VASN---RIYWSDLSQRMICSTQLDRAHG-V--- 65 (316)
T ss_dssp CEEEEECBSSEEEEETTSCCCEEEECSC--SSEEEEEEE-------TTTT---EEEEEETTTTEEEEEEC----------
T ss_pred CEEEEECCCeEEEEECCCcceEehhcCC--CceEEEEEE-------eCCC---EEEEEECCCCcEEEEECCCCCC-C---
Confidence 3567777778999999987765555443 358999998 5431 344443 368898888764110 0
Q ss_pred CCccccccceeeeccCCCCcEEEEEEecccCCCCEEE-EEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCC-C
Q 001391 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL-E 192 (1088)
Q Consensus 115 ~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la-sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~-~ 192 (1088)
......+...-.....+++.+ .+..|+ +-...+.|.+.++........+... ......+++ +| +
T Consensus 66 -------~~~~~~~~~~~~~p~glavd~---~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~-~~~P~~iav---dp~~ 131 (316)
T 1ijq_A 66 -------SSYDTVISRDIQAPDGLAVDW---IHSNIYWTDSVLGTVSVADTKGVKRKTLFREN-GSKPRAIVV---DPVH 131 (316)
T ss_dssp ---------CEEEECSSCSCCCEEEEET---TTTEEEEEETTTTEEEEEETTSSSEEEEEECT-TCCEEEEEE---ETTT
T ss_pred -------cccEEEEeCCCCCcCEEEEee---cCCeEEEEECCCCEEEEEeCCCCceEEEEECC-CCCcceEEe---CCCC
Confidence 001111122223467899987 555454 4456788999998754332222211 112233443 33 3
Q ss_pred CcEEEEEecC-CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE-eCCCCCEEEEEEcCCCCE
Q 001391 193 ALRIASGTIY-NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCGSK 270 (1088)
Q Consensus 193 ~~~l~sg~~d-g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~v~~sp~g~~ 270 (1088)
+.++.+.... +.|...++. +.....+ ...-....+|+++|+++.
T Consensus 132 g~ly~~d~~~~~~I~~~~~d----------------------------------G~~~~~~~~~~~~~P~gla~d~~~~~ 177 (316)
T 1ijq_A 132 GFMYWTDWGTPAKIKKGGLN----------------------------------GVDIYSLVTENIQWPNGITLDLLSGR 177 (316)
T ss_dssp TEEEEEECSSSCEEEEEETT----------------------------------SCCEEEEECSSCSCEEEEEEETTTTE
T ss_pred CEEEEEccCCCCeEEEEcCC----------------------------------CCCeEEEEECCCCCceEEEEeccCCE
Confidence 3333443222 567766665 1112222 223456889999998776
Q ss_pred EEEE-ECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEE
Q 001391 271 LVSV-SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMI 343 (1088)
Q Consensus 271 l~s~-s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~ 343 (1088)
|..+ +..+.|..+|+..... +.+. ...+.......+++. +.++++-...+.|..++. +|+.+..+
T Consensus 178 lY~~D~~~~~I~~~d~dg~~~------~~~~--~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 178 LYWVDSKLHSISSIDVNGGNR------KTIL--EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEEETTTTEEEEEETTSCSC------EEEE--ECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEEEECCCCeEEEEecCCCce------EEEe--ecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 6554 4567899999875321 2221 111112334566665 445555556678888876 66655544
No 268
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.23 E-value=0.0073 Score=73.80 Aligned_cols=95 Identities=9% Similarity=-0.007 Sum_probs=56.0
Q ss_pred EEEEEEeccCCCCCCCCCCccccccceeeecc-CCCCcEEEEEEecccCCCCEEEEEEc-CCcEEEEEcCCCceEEEecc
Q 001391 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLP-RLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNSSIILEVHS 175 (1088)
Q Consensus 98 ~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~I~~v~f~p~~~d~~~lasgs~-Dg~V~iWd~~~~~~~~~~~~ 175 (1088)
.+.+||..+.. .+.+..+. .+.....++++.+ ++++++.||. ++.+.+||..+.+....-..
T Consensus 220 ~~~~yd~~t~~-------------w~~~~~~~~~~~~~~~~~~~~~---~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~ 283 (656)
T 1k3i_A 220 LTSSWDPSTGI-------------VSDRTVTVTKHDMFCPGISMDG---NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDM 283 (656)
T ss_dssp EEEEECTTTCC-------------BCCCEEEECSCCCSSCEEEECT---TSCEEEECSSSTTCEEEEEGGGTEEEECCCC
T ss_pred EEEEEeCCCCc-------------EEeCcccCCCCCCccccccCCC---CCCEEEeCCCCCCceEEecCcCCceeECCCC
Confidence 56777776533 33333332 2334445677888 9999999884 56899999987755433222
Q ss_pred CCceeEEEEeeecCCCCCcEEEEEe-cC-----CeEEEEEec
Q 001391 176 PERCLLYSMKLWGDNLEALRIASGT-IY-----NEIIVWKVD 211 (1088)
Q Consensus 176 ~~~~~~~s~~~~~~s~~~~~l~sg~-~d-----g~I~vwd~~ 211 (1088)
+......++.. -+++.+++.|+ .+ ..+.+||..
T Consensus 284 ~~~R~~~s~~~---~~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 284 QVARGYQSSAT---MSDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp SSCCSSCEEEE---CTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred CccccccceEE---ecCCeEEEEeCcccCCcccccceEeCCC
Confidence 22111112222 24677888877 34 568888887
No 269
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.21 E-value=0.059 Score=59.01 Aligned_cols=238 Identities=12% Similarity=0.040 Sum_probs=127.4
Q ss_pred eEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeC-------------------CcceEEEEecccccc
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFH-------------------GIRLHGISCNFINCT 79 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~-------------------~~~V~~i~~s~~~~~ 79 (1088)
..++++. ++ ++++.++. ++.|..||..+++.. .+.... ...+.++++.
T Consensus 21 p~~i~~d--~~----g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~----- 88 (322)
T 2fp8_A 21 PNSFTFD--ST----NKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYN----- 88 (322)
T ss_dssp CCCEECC--TT----CSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEE-----
T ss_pred ceEEEEc--CC----CCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEc-----
Confidence 3467888 77 77666666 689999998776532 332100 1247889988
Q ss_pred cCC-CccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceee-eccCC-CCcEEEEEEecccCCCCEEEEEEc-
Q 001391 80 EGS-VSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQ-SLPRL-SHWVFDVCFLKVCNGNRSLAIGCS- 155 (1088)
Q Consensus 80 ~~~-d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~-~l~~h-~~~I~~v~f~p~~~d~~~lasgs~- 155 (1088)
+ ++ .++++...+.+..++..... .+.+. ...+. ......+++.+ .+|.+.++-..
T Consensus 89 --~~~g----~l~v~d~~~~i~~~d~~~g~-------------~~~~~~~~~~~~~~~p~~i~~d~--~~G~l~v~d~~~ 147 (322)
T 2fp8_A 89 --LQNN----QLYIVDCYYHLSVVGSEGGH-------------ATQLATSVDGVPFKWLYAVTVDQ--RTGIVYFTDVST 147 (322)
T ss_dssp --TTTT----EEEEEETTTEEEEECTTCEE-------------CEEEESEETTEECSCEEEEEECT--TTCCEEEEESCS
T ss_pred --CCCC----cEEEEECCCCEEEEeCCCCE-------------EEEecccCCCCcccccceEEEec--CCCEEEEECCcc
Confidence 5 55 56666555557777654221 11111 11111 13467788865 13454443221
Q ss_pred ----------------CCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEE-EEecCCeEEEEEeccCccccC
Q 001391 156 ----------------DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTIYNEIIVWKVDWEHVAPL 218 (1088)
Q Consensus 156 ----------------Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~-sg~~dg~I~vwd~~~~~~~~~ 218 (1088)
++.|..||..+++.......-. ....+++ ++++..|+ +-+..+.|.++++..... +
T Consensus 148 ~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~--~p~gia~---~~dg~~lyv~d~~~~~I~~~~~~~~~~-~- 220 (322)
T 2fp8_A 148 LYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELH--VPGGAEV---SADSSFVLVAEFLSHQIVKYWLEGPKK-G- 220 (322)
T ss_dssp SCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEES--CCCEEEE---CTTSSEEEEEEGGGTEEEEEESSSTTT-T-
T ss_pred cccccccceehcccCCCceEEEEeCCCCEEEEeccCCc--cCcceEE---CCCCCEEEEEeCCCCeEEEEECCCCcC-C-
Confidence 3668888887665432211100 0112333 57776554 445678999999872100 0
Q ss_pred CCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC----------CCcEEEEEcCCC
Q 001391 219 LNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD----------DRSARIWEVRAE 288 (1088)
Q Consensus 219 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~----------Dg~v~iWd~~~~ 288 (1088)
..+.+.. ..+ ...+++.++|.+.++... .+.|..+|...
T Consensus 221 --------------------------~~~~~~~---~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G- 269 (322)
T 2fp8_A 221 --------------------------TAEVLVK---IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFG- 269 (322)
T ss_dssp --------------------------CEEEEEE---CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTS-
T ss_pred --------------------------ccceEEe---CCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCC-
Confidence 1111222 123 788999999987777654 35577776542
Q ss_pred cccCCCCceeeeceeee-cc-CcceEEEEECC-CEEEEEeCCCcEEEEcCC
Q 001391 289 YWKDSDSIEEVGSSVLY-GH-NARVWDCCLTD-SFIITAGEDCTCRVWGSD 336 (1088)
Q Consensus 289 ~~~~~~~~~~i~~~~~~-~h-~~~I~~v~~~~-~~l~sg~~Dg~i~vWd~~ 336 (1088)
+.+..+... +. -..+.++++.+ .++++...++.|.++++.
T Consensus 270 --------~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 270 --------NILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp --------CEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC-
T ss_pred --------CEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEecc
Confidence 122101111 11 23455666664 444454567788888874
No 270
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.15 E-value=0.25 Score=51.61 Aligned_cols=202 Identities=11% Similarity=0.045 Sum_probs=119.7
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEe--CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE-
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF- 94 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~--d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~- 94 (1088)
..+.++++. |+ +..|.+.. ++.|...|.. |+.++.+.........+|++. +++ .++++.
T Consensus 27 ~~lSGla~~--~~----~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~-------~~g----~~~vs~E 88 (255)
T 3qqz_A 27 NNISSLTWS--AQ----SNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYI-------GDN----QFVISDE 88 (255)
T ss_dssp SCEEEEEEE--TT----TTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEEC-------STT----EEEEEET
T ss_pred cCcceeEEe--CC----CCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEe-------CCC----EEEEEEC
Confidence 469999999 97 55555544 4899999988 898888864322358899998 665 554554
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceee-ec--cCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC---Cc
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQ-SL--PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN---SS 168 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~-~l--~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~---~~ 168 (1088)
+++.+.++++...... ....... .+ .......-.+++.| .++.|.++.......+|.+.. ..
T Consensus 89 ~~~~l~~~~v~~~~~i---------~~~~~~~~~~~~~~~N~g~EGLA~d~---~~~~L~va~E~~p~~i~~~~g~~~~~ 156 (255)
T 3qqz_A 89 RDYAIYVISLTPNSEV---------KILKKIKIPLQESPTNCGFEGLAYSR---QDHTFWFFKEKNPIEVYKVNGLLSSN 156 (255)
T ss_dssp TTTEEEEEEECTTCCE---------EEEEEEECCCSSCCCSSCCEEEEEET---TTTEEEEEEESSSEEEEEEESTTCSS
T ss_pred CCCcEEEEEcCCCCee---------eeeeeeccccccccccCCcceEEEeC---CCCEEEEEECcCCceEEEEcccccCC
Confidence 4788999988753300 0001111 11 12345578999999 887777776655556666541 11
Q ss_pred eEEEecc------CCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccc
Q 001391 169 IILEVHS------PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (1088)
Q Consensus 169 ~~~~~~~------~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 242 (1088)
.+..+.. ....-..++++. ...+.+++.....+.|.++|...
T Consensus 157 ~l~i~~~~~~~~~~~~~d~S~l~~d--p~tg~lliLS~~s~~L~~~d~~g------------------------------ 204 (255)
T 3qqz_A 157 ELHISKDKALQRQFTLDDVSGAEFN--QQKNTLLVLSHESRALQEVTLVG------------------------------ 204 (255)
T ss_dssp CCEEEECHHHHHTCCSSCCCEEEEE--TTTTEEEEEETTTTEEEEECTTC------------------------------
T ss_pred ceeeecchhhccccccCCceeEEEc--CCCCeEEEEECCCCeEEEEcCCC------------------------------
Confidence 1111111 011112345554 34466777777888888888760
Q ss_pred ccceeeeEEEe-CC------CCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 001391 243 QHTAVNLFRLV-GH------EGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (1088)
Q Consensus 243 ~~~~~~~~~~~-gh------~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd 284 (1088)
.......+. +. -..--+|+|.++|...++ ++-..++.+.
T Consensus 205 --~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 205 --EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp --CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred --CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 111122222 11 136789999999985555 6766554443
No 271
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.08 E-value=0.017 Score=67.53 Aligned_cols=199 Identities=8% Similarity=-0.014 Sum_probs=118.8
Q ss_pred CCEEEEEe--CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE------------------
Q 001391 35 LPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF------------------ 94 (1088)
Q Consensus 35 ~~~laag~--d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~------------------ 94 (1088)
+++|.... ++.|.+.|+.+.++...+....+...+++++..- |+++ .+++..
T Consensus 101 G~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~-----p~~~---~v~~~~~~~~p~~~dg~~l~~~~~ 172 (595)
T 1fwx_A 101 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKW-----PRSN---YVFCNGEDETPLVNDGTNMEDVAN 172 (595)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCS-----SBCS---EEEEEECSCEESSCSSSSTTCGGG
T ss_pred CCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeec-----CCCc---EEEEecccccccCCCCcccccccc
Confidence 78888876 4889999999999998777666667999998411 4552 444442
Q ss_pred CCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCC-----------------
Q 001391 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN----------------- 157 (1088)
Q Consensus 95 gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg----------------- 157 (1088)
.++.+.++|.++ .+....+.-- +.-..++++| +|+++++.+.+.
T Consensus 173 ~~~~vtvID~~t---------------~~v~~qI~Vg-g~pd~~~~sp---dGk~~~vt~~~se~~~~i~~~~~~~~d~v 233 (595)
T 1fwx_A 173 YVNVFTAVDADK---------------WEVAWQVLVS-GNLDNCDADY---EGKWAFSTSYNSEKGMTLPEMTAAEMDHI 233 (595)
T ss_dssp EEEEEEEEETTT---------------TEEEEEEEES-SCCCCEEECS---SSSEEEEEESCTTCCSSHHHHTCCSEEEE
T ss_pred cCceEEEEECCC---------------CeEEEEEEeC-CCccceEECC---CCCEEEEEecCcccCcchhhccccccceE
Confidence 135778888764 2233332210 1224466777 777777766432
Q ss_pred ---------------------cEEEEEcCC--Cce-EEEeccCCceeEEEEeeecCCCCCcEEEEE-ecCCeEEEEEecc
Q 001391 158 ---------------------SIRVWDISN--SSI-ILEVHSPERCLLYSMKLWGDNLEALRIASG-TIYNEIIVWKVDW 212 (1088)
Q Consensus 158 ---------------------~V~iWd~~~--~~~-~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg-~~dg~I~vwd~~~ 212 (1088)
.|.+.|..+ ++. +..+..+... ..+.+ +|||.++++. ..+.+|.++|+.+
T Consensus 234 ~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~P--hGv~~---sPDGk~v~V~~~~s~~VsVid~~~ 308 (595)
T 1fwx_A 234 VVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNP--HGCNM---APDKKHLCVAGKLSPTVTVLDVTR 308 (595)
T ss_dssp EEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSC--CCEEE---CTTSSEEEEECTTSSBEEEEEGGG
T ss_pred EEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCc--eEEEE---cCCCCEEEEeCCCCCeEEEEECcc
Confidence 366777766 433 3444322111 11222 6899876654 4688999999983
Q ss_pred CccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001391 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (1088)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~ 287 (1088)
.+... ++. + ........... -......++|+|+|...++.-.|++|..||+..
T Consensus 309 ~~~~~----------~~~------l-----~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 309 FDAVF----------YEN------A-----DPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp HHHHH----------HSC------C-----CGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred ccccc----------ccc------c-----CcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 21000 000 0 00111222222 224578899999994456677799999999976
No 272
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.03 E-value=0.56 Score=51.29 Aligned_cols=193 Identities=11% Similarity=0.052 Sum_probs=100.4
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEE-Ec
Q 001391 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRV-WG 334 (1088)
Q Consensus 257 ~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~v-Wd 334 (1088)
+.+..+.+.+++..++.+ .++.| |...++.. .-+. ...++...+..+.+. +..++..+.+|.+.. +|
T Consensus 122 ~~~~~i~~~~~~~~~~~~-~~g~v--~~S~DgG~----tW~~----~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d 190 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMIT-NVGAI--YRTKDSGK----NWQA----LVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWE 190 (327)
T ss_dssp SCEEEEEEEETTEEEEEE-TTCCE--EEESSTTS----SEEE----EECSCCCCEEEEEECTTSCEEEEETTSSEEEEEC
T ss_pred CCeEEEEEECCCCEEEEe-CCccE--EEEcCCCC----CCEE----eecCCCcceEEEEEcCCCcEEEEECCCcEEEEeC
Confidence 456777777766655554 45544 33322110 0111 223445578888887 334444445555443 44
Q ss_pred CCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEe-eeCCCcccee
Q 001391 335 SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSI-KIPNFSEQIR 413 (1088)
Q Consensus 335 ~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 413 (1088)
-.++.-..+.......+..+++.+++.++ .++.+|.+.+.+.++ ...+.. ..+..
T Consensus 191 ~gG~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~------------------G~tW~~~~~~~~----- 246 (327)
T 2xbg_A 191 PGQTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDN------------------SENWGELLSPLR----- 246 (327)
T ss_dssp TTCSSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTE------------------EEEECCCBCTTS-----
T ss_pred CCCCceeECCCCCCCccceeEECCCCCEE-EEeCCceEEEecCCC------------------CCeeEeccCCcc-----
Confidence 33443333322222358899999988755 455678776654221 111110 00100
Q ss_pred eccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeec-CCcceEEEecCCCCCCCcCCCCCeEEEecC
Q 001391 414 LTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVS-EGMPIICMDLLSNEPKYPCGIDDWVALGDG 492 (1088)
Q Consensus 414 ~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~~~~~~~~s~~~~~~la~g~~ 492 (1088)
.....+..+++.+++.+++.+.+|.++ ........|..+.... ....+..+.+.. +..+++++.
T Consensus 247 ---~~~~~~~~v~~~~~~~~~~~g~~g~i~---~S~DgG~tW~~~~~~~~~~~~~~~v~~~~---------~~~~~~~G~ 311 (327)
T 2xbg_A 247 ---RNSVGFLDLAYRTPNEVWLAGGAGALL---CSQDGGQTWQQDVDVKKVPSNFYKILFFS---------PDQGFILGQ 311 (327)
T ss_dssp ---SCCSCEEEEEESSSSCEEEEESTTCEE---EESSTTSSCEECGGGTTSSSCCCEEEEEE---------TTEEEEECS
T ss_pred ---cCCcceEEEEecCCCEEEEEeCCCeEE---EeCCCCcccEEcCccCCCCCCeEEEEEEC---------CCceEEEcC
Confidence 011247788888888888888888876 3334345686654321 122344444422 245666667
Q ss_pred CCCEEEE
Q 001391 493 KGNMTIV 499 (1088)
Q Consensus 493 dg~I~iw 499 (1088)
+|.|.-+
T Consensus 312 ~G~i~~~ 318 (327)
T 2xbg_A 312 KGILLRY 318 (327)
T ss_dssp TTEEEEE
T ss_pred CceEEEE
Confidence 8866554
No 273
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.90 E-value=0.57 Score=50.57 Aligned_cols=208 Identities=9% Similarity=-0.048 Sum_probs=112.4
Q ss_pred cceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEec
Q 001391 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (1088)
Q Consensus 122 ~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~ 201 (1088)
.+.+..+... .....+++++ +++++++-..++.|..||.... ....+..+. ....+++ .+++.++++...
T Consensus 22 ~~~~~~~p~~-~~pegia~~~---~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~--~p~gia~---~~dG~l~vad~~ 91 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAP---DGTIFVTNHEVGEIVSITPDGN-QQIHATVEG--KVSGLAF---TSNGDLVATGWN 91 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECT---TSCEEEEETTTTEEEEECTTCC-EEEEEECSS--EEEEEEE---CTTSCEEEEEEC
T ss_pred ceEeEeCCCC-CCcceEEECC---CCCEEEEeCCCCeEEEECCCCc-eEEEEeCCC--CceeEEE---cCCCcEEEEecc
Confidence 3445555432 5688999999 8887776667889999998654 333332222 2344544 466776555433
Q ss_pred CC--eEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCc
Q 001391 202 YN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRS 279 (1088)
Q Consensus 202 dg--~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~ 279 (1088)
.+ .|..++..+++ ...+..+ ........++..+++..+++-..++.
T Consensus 92 ~~~~~v~~~d~~~g~-------------------------------~~~~~~~-~~~~~~~g~~~~~~~~~~v~d~~~g~ 139 (306)
T 2p4o_A 92 ADSIPVVSLVKSDGT-------------------------------VETLLTL-PDAIFLNGITPLSDTQYLTADSYRGA 139 (306)
T ss_dssp TTSCEEEEEECTTSC-------------------------------EEEEEEC-TTCSCEEEEEESSSSEEEEEETTTTE
T ss_pred CCcceEEEEcCCCCe-------------------------------EEEEEeC-CCccccCcccccCCCcEEEEECCCCe
Confidence 32 35555654111 1111111 11223345555555555555556788
Q ss_pred EEEEEcCCCcccCCCCceee--ece----eeeccCcceEEEEECCC-EEEEEeCCCcEEEEcCC--Cce--eEEEcccCC
Q 001391 280 ARIWEVRAEYWKDSDSIEEV--GSS----VLYGHNARVWDCCLTDS-FIITAGEDCTCRVWGSD--GKQ--LKMIKEHIG 348 (1088)
Q Consensus 280 v~iWd~~~~~~~~~~~~~~i--~~~----~~~~h~~~I~~v~~~~~-~l~sg~~Dg~i~vWd~~--~~~--~~~~~~h~~ 348 (1088)
|..+|...+.. +.. ... ...+.-.....+...+. ++++-...+.|.+++++ ++. ...+... .
T Consensus 140 i~~~d~~~~~~------~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~ 212 (306)
T 2p4o_A 140 IWLIDVVQPSG------SIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-T 212 (306)
T ss_dssp EEEEETTTTEE------EEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-C
T ss_pred EEEEeCCCCcE------eEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-C
Confidence 88888764311 000 000 00011112334434454 44555567889999984 321 1222111 1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 349 RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 349 ~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
....++++++|++.++....+.|.+++..+
T Consensus 213 -~P~gi~vd~dG~l~va~~~~~~V~~~~~~G 242 (306)
T 2p4o_A 213 -NIDDFAFDVEGNLYGATHIYNSVVRIAPDR 242 (306)
T ss_dssp -CCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred -CCCCeEECCCCCEEEEeCCCCeEEEECCCC
Confidence 245788999998777777778899888753
No 274
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.82 E-value=0.52 Score=52.08 Aligned_cols=231 Identities=10% Similarity=-0.056 Sum_probs=126.6
Q ss_pred CEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCC
Q 001391 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQY 114 (1088)
Q Consensus 36 ~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~ 114 (1088)
.+|+.+....|+..++........+... ..+.+++|. +..+ .+..+- ..+.|..+++....
T Consensus 45 ~~ll~~~~~~I~~i~~~g~~~~~~~~~~--~~~~~l~~d-------~~~~---~ly~~D~~~~~I~r~~~~g~~------ 106 (349)
T 3v64_C 45 PVLLFANRIDIRQVLPHRSEYTLLLNNL--ENAIALDFH-------HRRE---LVFWSDVTLDRILRANLNGSN------ 106 (349)
T ss_dssp CEEEEECBSCEEEECTTSCCEEEEECSC--SCEEEEEEE-------TTTT---EEEEEETTTTEEEEEETTSCS------
T ss_pred ceeEeecccceEEEeCCCCeeEEeecCC--CceEEEEEe-------cccc---EEEEEeccCCceEEEecCCCC------
Confidence 5677677677888898765544333332 258999998 4331 344443 46888888876422
Q ss_pred CCccccccceeeeccCCCCcEEEEEEecccCCCCEE-EEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCC-C
Q 001391 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL-AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL-E 192 (1088)
Q Consensus 115 ~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~l-asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~-~ 192 (1088)
.+.+ +.........+++.+ .+..| ++-...+.|.+.++........+... ......+++ +| +
T Consensus 107 -------~~~~--~~~~~~~p~glavd~---~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~-l~~P~~iav---dp~~ 170 (349)
T 3v64_C 107 -------VEEV--VSTGLESPGGLAVDW---VHDKLYWTDSGTSRIEVANLDGAHRKVLLWQS-LEKPRAIAL---HPME 170 (349)
T ss_dssp -------CEEE--ECSSCSCCCEEEEET---TTTEEEEEETTTTEEEEEETTSCSCEEEECTT-CSCEEEEEE---ETTT
T ss_pred -------ceEE--EeCCCCCccEEEEec---CCCeEEEEcCCCCeEEEEcCCCCceEEEEeCC-CCCcceEEE---ecCc
Confidence 1111 111223457889987 55544 44455678999998755433222211 111233444 23 3
Q ss_pred CcEEEEEecC-CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE-eCCCCCEEEEEEcCCCCE
Q 001391 193 ALRIASGTIY-NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCGSK 270 (1088)
Q Consensus 193 ~~~l~sg~~d-g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~v~~sp~g~~ 270 (1088)
+.+..+-... +.|...++. +.....+ ...-....+|+++|+++.
T Consensus 171 g~ly~td~~~~~~I~r~~~d----------------------------------G~~~~~~~~~~~~~PnGla~d~~~~~ 216 (349)
T 3v64_C 171 GTIYWTDWGNTPRIEASSMD----------------------------------GSGRRIIADTHLFWPNGLTIDYAGRR 216 (349)
T ss_dssp TEEEEEECSSSCEEEEEETT----------------------------------SCSCEESCCSSCSCEEEEEEETTTTE
T ss_pred CeEEEeccCCCCEEEEEeCC----------------------------------CCCcEEEEECCCCCcceEEEeCCCCE
Confidence 4444444444 667777765 1111111 122346789999987766
Q ss_pred EEE-EECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEc
Q 001391 271 LVS-VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIK 344 (1088)
Q Consensus 271 l~s-~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~ 344 (1088)
|.. -+..+.|..+++..... +. ...........+++. +.++++-...+.|...+. +|+....+.
T Consensus 217 lY~aD~~~~~I~~~~~dG~~~------~~----~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 217 MYWVDAKHHVIERANLDGSHR------KA----VISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEEETTTTEEEEEETTSCSC------EE----EECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEEECCCCEEEEEeCCCCce------EE----EEeCCCCCceEEEEECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 544 45567899999875321 11 111122334455555 445555556677777774 665555543
No 275
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.70 E-value=0.7 Score=51.84 Aligned_cols=232 Identities=9% Similarity=-0.063 Sum_probs=127.9
Q ss_pred CEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEE-CCCEEEEEEeccCCCCCCCC
Q 001391 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQY 114 (1088)
Q Consensus 36 ~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~-gd~~v~iw~l~~~~~~~~~~ 114 (1088)
.+|+.+....|+.+++..+.....+.... .+.+++|. +..+ .++.+- ..+.|..+++....
T Consensus 88 ~~l~~~~~~~I~~i~~~~~~~~~~~~~~~--~~~gl~~d-------~~~~---~ly~~D~~~~~I~r~~~~g~~------ 149 (386)
T 3v65_B 88 PVLLFANRIDIRQVLPHRSEYTLLLNNLE--NAIALDFH-------HRRE---LVFWSDVTLDRILRANLNGSN------ 149 (386)
T ss_dssp CEEEEECBSCEEEECTTSCCCEEEECSCS--CEEEEEEE-------TTTT---EEEEEETTTTEEEEEETTSCC------
T ss_pred ceeEeecCccceeeccCCCcEEEEecCCC--ccEEEEEe-------cCCC---eEEEEeCCCCcEEEEecCCCC------
Confidence 56777777789999988766544444333 58999998 4331 444443 46888888876321
Q ss_pred CCccccccceeeeccCCCCcEEEEEEecccCCCCEE-EEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCC-
Q 001391 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL-AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE- 192 (1088)
Q Consensus 115 ~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~l-asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~- 192 (1088)
....+.........+++.+ .+..| ++-...+.|.+.++........+... ......+++ +|.
T Consensus 150 ---------~~~~~~~~~~~p~glavd~---~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~-l~~P~giav---dp~~ 213 (386)
T 3v65_B 150 ---------VEEVVSTGLESPGGLAVDW---VHDKLYWTDSGTSRIEVANLDGAHRKVLLWQS-LEKPRAIAL---HPME 213 (386)
T ss_dssp ---------EEEEECSSCSCCCCEEEET---TTTEEEEEETTTTEEEECBTTSCSCEEEECSS-CSCEEEEEE---ETTT
T ss_pred ---------cEEEEeCCCCCccEEEEEe---CCCeEEEEcCCCCeEEEEeCCCCceEEeecCC-CCCCcEEEE---EcCC
Confidence 1111111223456788887 55544 44455678888887654433222211 111233343 233
Q ss_pred CcEEEEEecC-CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEE
Q 001391 193 ALRIASGTIY-NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (1088)
Q Consensus 193 ~~~l~sg~~d-g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l 271 (1088)
+.+..+-... +.|...++. ...........-....+|+++|+++.|
T Consensus 214 g~ly~td~~~~~~I~r~~~d---------------------------------G~~~~~~~~~~~~~PnGlavd~~~~~l 260 (386)
T 3v65_B 214 GTIYWTDWGNTPRIEASSMD---------------------------------GSGRRIIADTHLFWPNGLTIDYAGRRM 260 (386)
T ss_dssp TEEEEEECSSSCEEEEEETT---------------------------------SCSCEEEECSSCSCEEEEEEEGGGTEE
T ss_pred CeEEEeccCCCCEEEEEeCC---------------------------------CCCcEEEEECCCCCeeeEEEeCCCCEE
Confidence 3334443333 566666665 111111222334567899999876665
Q ss_pred E-EEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEc
Q 001391 272 V-SVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIK 344 (1088)
Q Consensus 272 ~-s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~ 344 (1088)
. +-+..+.|..+++..... +. ...........+++. +.++++-...+.|..++. +|+....+.
T Consensus 261 Y~aD~~~~~I~~~d~dG~~~------~~----~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 261 YWVDAKHHVIERANLDGSHR------KA----VISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEEETTTTEEEEECTTSCSC------EE----EECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEECCCCEEEEEeCCCCee------EE----EEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 4 445567888888765321 11 111122334555555 555666667788888884 676665554
No 276
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.69 E-value=0.66 Score=52.07 Aligned_cols=222 Identities=9% Similarity=-0.079 Sum_probs=122.5
Q ss_pred eEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEE-EEEcCCcEEEEEcCCC
Q 001391 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDNSIRVWDISNS 167 (1088)
Q Consensus 89 ~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la-sgs~Dg~V~iWd~~~~ 167 (1088)
..|..+....|+.+++.... ... +......+..++|.+ .++.|+ +-...+.|..+++...
T Consensus 88 ~~l~~~~~~~I~~i~~~~~~-------------~~~---~~~~~~~~~gl~~d~---~~~~ly~~D~~~~~I~r~~~~g~ 148 (386)
T 3v65_B 88 PVLLFANRIDIRQVLPHRSE-------------YTL---LLNNLENAIALDFHH---RRELVFWSDVTLDRILRANLNGS 148 (386)
T ss_dssp CEEEEECBSCEEEECTTSCC-------------CEE---EECSCSCEEEEEEET---TTTEEEEEETTTTEEEEEETTSC
T ss_pred ceeEeecCccceeeccCCCc-------------EEE---EecCCCccEEEEEec---CCCeEEEEeCCCCcEEEEecCCC
Confidence 45555566777777765322 111 112235688999997 555554 4456788999998766
Q ss_pred ceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccccee
Q 001391 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1088)
Q Consensus 168 ~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 247 (1088)
.....+..... ....+++- ...+.+.++-...+.|.+.++. ...
T Consensus 149 ~~~~~~~~~~~-~p~glavd--~~~g~lY~~d~~~~~I~~~~~d---------------------------------g~~ 192 (386)
T 3v65_B 149 NVEEVVSTGLE-SPGGLAVD--WVHDKLYWTDSGTSRIEVANLD---------------------------------GAH 192 (386)
T ss_dssp CEEEEECSSCS-CCCCEEEE--TTTTEEEEEETTTTEEEECBTT---------------------------------SCS
T ss_pred CcEEEEeCCCC-CccEEEEE--eCCCeEEEEcCCCCeEEEEeCC---------------------------------CCc
Confidence 54333221111 01112221 1234444444455666666654 111
Q ss_pred eeEEEeCCCCCEEEEEEcCCCCEEEEEE-CC-CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CC-EEE
Q 001391 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVS-DD-RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS-FII 322 (1088)
Q Consensus 248 ~~~~~~gh~~~V~~v~~sp~g~~l~s~s-~D-g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~-~l~ 322 (1088)
....+...-.....+++.|.+..|..+. .. +.|...++..... .. .....-.....++++ +. +++
T Consensus 193 ~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~------~~----~~~~~~~~PnGlavd~~~~~lY~ 262 (386)
T 3v65_B 193 RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR------RI----IADTHLFWPNGLTIDYAGRRMYW 262 (386)
T ss_dssp CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------EE----EECSSCSCEEEEEEEGGGTEEEE
T ss_pred eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc------EE----EEECCCCCeeeEEEeCCCCEEEE
Confidence 1222233346689999999777665544 34 6777777765321 11 111223346788886 34 445
Q ss_pred EEeCCCcEEEEcCCCceeEEEc-ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 323 TAGEDCTCRVWGSDGKQLKMIK-EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 323 sg~~Dg~i~vWd~~~~~~~~~~-~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
+-...+.|..++++|.....+. .... ....+++. .+.++++-...+.|..++.
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~~~~~-~P~giav~-~~~ly~td~~~~~V~~~~~ 316 (386)
T 3v65_B 263 VDAKHHVIERANLDGSHRKAVISQGLP-HPFAITVF-EDSLYWTDWHTKSINSANK 316 (386)
T ss_dssp EETTTTEEEEECTTSCSCEEEECSSCS-SEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred EECCCCEEEEEeCCCCeeEEEEECCCC-CceEEEEE-CCEEEEeeCCCCeEEEEEC
Confidence 5556688999999765544432 2222 46788883 4455566666778888873
No 277
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.61 E-value=0.32 Score=55.61 Aligned_cols=201 Identities=12% Similarity=0.098 Sum_probs=104.7
Q ss_pred CCCcEEEEEEecccCCCCEEEEEEc-CC----cEEEEEcCCCceE--EEeccCCceeEEEEeeecCCC-CCcEEEEEecC
Q 001391 131 LSHWVFDVCFLKVCNGNRSLAIGCS-DN----SIRVWDISNSSII--LEVHSPERCLLYSMKLWGDNL-EALRIASGTIY 202 (1088)
Q Consensus 131 h~~~I~~v~f~p~~~d~~~lasgs~-Dg----~V~iWd~~~~~~~--~~~~~~~~~~~~s~~~~~~s~-~~~~l~sg~~d 202 (1088)
.......++|++ +++.|+++.. ++ .+...+. .+... ..+.... ....+++ ++ ++.++++-...
T Consensus 177 ~~~~P~~ia~d~---~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~~~--~p~giav---dp~~g~lyv~d~~~ 247 (430)
T 3tc9_A 177 GLSKVRTICWTH---EADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTKGQ--NCNGAET---HPINGELYFNSWNA 247 (430)
T ss_dssp CCSCEEEEEECT---TSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEECS--SCCCEEE---CTTTCCEEEEETTT
T ss_pred CCCCcceEEEeC---CCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeeccCC--CceEEEE---eCCCCEEEEEECCC
Confidence 445688999999 9996666543 22 2333443 22211 1111000 0112222 45 56666666677
Q ss_pred CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceee--eEEEeCCCCCEEEEEEcCCCCE-EEEEECCCc
Q 001391 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN--LFRLVGHEGSIFRIEWSSCGSK-LVSVSDDRS 279 (1088)
Q Consensus 203 g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~--~~~~~gh~~~V~~v~~sp~g~~-l~s~s~Dg~ 279 (1088)
+.|..++.. .... +.. .+.......++|+|++++ +++-...+.
T Consensus 248 ~~V~~~~~~---------------------------------~~~~~~~~~-~~~~~~P~gia~~pdG~~lyv~d~~~~~ 293 (430)
T 3tc9_A 248 GQVFRYDFT---------------------------------TQETTPLFT-IQDSGWEFHIQFHPSGNYAYIVVVNQHY 293 (430)
T ss_dssp TEEEEEETT---------------------------------TTEEEEEEE-CSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred CEEEEEECC---------------------------------CCcEEEEEE-cCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence 888888876 2221 111 122345789999999995 455556788
Q ss_pred EEEEEcCCC--cccCCCCceeeece-eeecc---------CcceE-EEEEC----------CCEEEEEeCCCcEEEEcCC
Q 001391 280 ARIWEVRAE--YWKDSDSIEEVGSS-VLYGH---------NARVW-DCCLT----------DSFIITAGEDCTCRVWGSD 336 (1088)
Q Consensus 280 v~iWd~~~~--~~~~~~~~~~i~~~-~~~~h---------~~~I~-~v~~~----------~~~l~sg~~Dg~i~vWd~~ 336 (1088)
|..++.... ... ....+... ...+. -.... .++.. +.++++=...+.|+.++.+
T Consensus 294 I~~~~~d~~~~~~~---~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~ 370 (430)
T 3tc9_A 294 ILRSDYDWKTKRLT---TPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ 370 (430)
T ss_dssp EEEEEEETTTTEEC---CCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT
T ss_pred EEEEeCCccccccc---ceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCC
Confidence 988876542 110 00001000 00000 01122 34442 2344444566788888877
Q ss_pred CceeEEEcc----cCC------------CCeEEEEEcCC-CCEEEEEeCCCCEEEEEc
Q 001391 337 GKQLKMIKE----HIG------------RGIWRCLYDSL-SSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 337 ~~~~~~~~~----h~~------------~~V~~l~~~~d-g~~l~tg~~Dg~I~iwd~ 377 (1088)
|+....... ..+ ..-+.++++++ +.++++-.....|+.+++
T Consensus 371 G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 371 GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 754433321 000 13678999994 655555556677887765
No 278
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.58 E-value=0.4 Score=52.20 Aligned_cols=191 Identities=13% Similarity=0.207 Sum_probs=109.9
Q ss_pred CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC---CCEEEEEEeccCCCCCCCCCCccc
Q 001391 43 GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPETC 119 (1088)
Q Consensus 43 d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g---d~~v~iw~l~~~~~~~~~~~~~~~ 119 (1088)
.+-|.|||+ +|++++.+.. + +++.+...|.+-. .|+..+..+++-. +++|++|++.....
T Consensus 49 ~~gL~Vydl-~G~~l~~~~~--g-~~nnVD~r~~~~l---~g~~~dla~as~R~~~~n~l~vf~iDp~~~---------- 111 (355)
T 3amr_A 49 KSGLVVYSL-DGKMLHSYNT--G-KLNNVDIRYDFPL---NGKKVDIAAASNRSEGKNTIEIYAIDGKNG---------- 111 (355)
T ss_dssp TTEEEEEET-TSCEEEEECC--S-CEEEEEEEEEEEE---TTEEEEEEEEEECSTTCCEEEEEEECTTTC----------
T ss_pred CCCEEEEcC-CCcEEEEccC--C-CcccEEEeccccc---CCceEeEEEEeCCCCCCCeEEEEEECCCCC----------
Confidence 588999999 8999988764 3 6888888753210 1211123344433 47899999863220
Q ss_pred cccceeeec--c-CCC-CcEEEEEE--ecccCCCC-EEEEEEcCCcEEEEEcC-------CCceEEEeccCCceeEEEEe
Q 001391 120 VNLSLVQSL--P-RLS-HWVFDVCF--LKVCNGNR-SLAIGCSDNSIRVWDIS-------NSSIILEVHSPERCLLYSMK 185 (1088)
Q Consensus 120 ~~~~~~~~l--~-~h~-~~I~~v~f--~p~~~d~~-~lasgs~Dg~V~iWd~~-------~~~~~~~~~~~~~~~~~s~~ 185 (1088)
.++.+... . +.. ..+..+++ +| ..+. ++++...+|.+..|++. +.+.+.++..+.. .-.+.
T Consensus 112 -~l~~i~~~~~pv~t~~~~pyGlcly~~~--~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq--~Egcv 186 (355)
T 3amr_A 112 -TLQSMTDPDHPIATAINEVYGFTLYHSQ--KTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQ--TEGMA 186 (355)
T ss_dssp -CEEECSCTTSCEECCCSSCCCEEEEECT--TTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSC--EEEEE
T ss_pred -ceeeccccccCcCCCCCCeeEEEEEecC--CCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCC--cceEE
Confidence 01222111 1 111 56777888 55 1333 68888889999999983 2344566654432 22222
Q ss_pred eecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe-CC-CCCEEEEE
Q 001391 186 LWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-GH-EGSIFRIE 263 (1088)
Q Consensus 186 ~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-gh-~~~V~~v~ 263 (1088)
+ ++....|+.+-.+..|..++.+ +. ...+.+.+..+. +| ...+..|+
T Consensus 187 v---Dd~~g~Lyv~eEd~GIw~~da~-----p~-----------------------~~~~~~~v~~~~~g~l~aDvEGLa 235 (355)
T 3amr_A 187 A---DDEYGRLYIAEEDEAIWKFSAE-----PD-----------------------GGSNGTVIDRADGRHLTRDIEGLT 235 (355)
T ss_dssp E---ETTTTEEEEEETTTEEEEEECS-----TT-----------------------SCSCCEEEEEBSSSSBCSCEEEEE
T ss_pred E---cCCCCeEEEecccceEEEEeCC-----cC-----------------------CCCCceEEEEecCCccccCcceEE
Confidence 2 3556788888888654444433 00 000223343332 22 24688888
Q ss_pred E--cCCCC-EEEEEE-CCCcEEEEEcC
Q 001391 264 W--SSCGS-KLVSVS-DDRSARIWEVR 286 (1088)
Q Consensus 264 ~--sp~g~-~l~s~s-~Dg~v~iWd~~ 286 (1088)
+ .++++ +|++++ .+.+..+||..
T Consensus 236 i~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 236 IYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 8 45555 666665 56789999986
No 279
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.57 E-value=0.81 Score=49.75 Aligned_cols=232 Identities=14% Similarity=-0.025 Sum_probs=125.2
Q ss_pred CEEEEEeCCeEEEEECCCCe--eEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCC
Q 001391 36 PFLLAGSGSQVLLYDLEAGT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNS 112 (1088)
Q Consensus 36 ~~laag~d~~I~vwd~~tg~--~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~ 112 (1088)
.+|+.+....|+..|+.... ....+... ..+.+++|. +..+ .+..+ ...+.|..+++.....
T Consensus 5 p~ll~~~~~~I~~i~l~~~~~~~~~~~~~~--~~~~~ld~d-------~~~~---~lyw~D~~~~~I~r~~~~g~~~--- 69 (318)
T 3sov_A 5 PLLLYANRRDLRLVDATNGKENATIVVGGL--EDAAAVDFV-------FSHG---LIYWSDVSEEAIKRTEFNKTES--- 69 (318)
T ss_dssp CEEEEECEEEEEEEETTCTTSCCEEEEEEE--EEEEEEEEE-------GGGT---EEEEEETTTTEEEEEETTSSSC---
T ss_pred cEEEEEccCeEEEEECCCCceEEEEEecCC--CccEEEEEE-------eCCC---EEEEEECCCCcEEEEEccCCCc---
Confidence 56777777889999998763 22222222 247789998 4321 34333 3468888888764210
Q ss_pred CCCCccccccceeeeccCCCCcEEEEEEecccCCCCEE-EEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCC
Q 001391 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL-AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL 191 (1088)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~l-asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~ 191 (1088)
....+ ...-.....+++.+ .+..| ++-...+.|.++++........+. ........+++ .+
T Consensus 70 --------~~~~~---~~~l~~p~glavd~---~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~~~~~P~giav---dp 131 (318)
T 3sov_A 70 --------VQNVV---VSGLLSPDGLACDW---LGEKLYWTDSETNRIEVSNLDGSLRKVLFW-QELDQPRAIAL---DP 131 (318)
T ss_dssp --------CCEEE---EECCSCCCEEEEET---TTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEE---EG
T ss_pred --------eEEEE---cCCCCCccEEEEEc---CCCeEEEEECCCCEEEEEECCCCcEEEEEe-CCCCCccEEEE---eC
Confidence 00111 11123466788887 55544 444556789999986543322221 11111223333 23
Q ss_pred CCcEEEEEe--cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE-eCCCCCEEEEEEcCCC
Q 001391 192 EALRIASGT--IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCG 268 (1088)
Q Consensus 192 ~~~~l~sg~--~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~v~~sp~g 268 (1088)
.+..|+... ..+.|...++. +.....+ ...-....+|+++|++
T Consensus 132 ~~g~ly~td~~~~~~I~r~~~d----------------------------------G~~~~~~~~~~l~~Pnglavd~~~ 177 (318)
T 3sov_A 132 SSGFMYWTDWGEVPKIERAGMD----------------------------------GSSRFIIINSEIYWPNGLTLDYEE 177 (318)
T ss_dssp GGTEEEEEECSSSCEEEEEETT----------------------------------SCSCEEEECSSCSCEEEEEEETTT
T ss_pred CCCEEEEEecCCCCEEEEEEcC----------------------------------CCCeEEEEECCCCCccEEEEeccC
Confidence 333333333 24666666665 1111122 2233567899999977
Q ss_pred CEEEE-EECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEc
Q 001391 269 SKLVS-VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIK 344 (1088)
Q Consensus 269 ~~l~s-~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~ 344 (1088)
+.|.. -+..+.|..+|+..... +.+ ..+.......+++. +.++.+-...+.|..++. +|+....+.
T Consensus 178 ~~lY~aD~~~~~I~~~d~dG~~~------~~~----~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 178 QKLYWADAKLNFIHKSNLDGTNR------QAV----VKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSC------EEE----ECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CEEEEEECCCCEEEEEcCCCCce------EEE----ecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 66554 45567899999875321 211 12223344556655 455556556677888887 666555443
No 280
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.55 E-value=1.5 Score=49.42 Aligned_cols=240 Identities=9% Similarity=-0.069 Sum_probs=132.9
Q ss_pred CCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCC
Q 001391 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQ 113 (1088)
Q Consensus 35 ~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~ 113 (1088)
..+|+......|+..++........+.. ...+.+++|. +..+ .+..+ ...+.|..+++.....
T Consensus 83 ~~~ll~~~~~~I~~i~l~~~~~~~~~~~--~~~~~~l~~d-------~~~~---~lywsD~~~~~I~~~~~~g~~~---- 146 (400)
T 3p5b_L 83 IAYLFFTNRHEVRKMTLDRSEYTSLIPN--LRNVVALDTE-------VASN---RIYWSDLSQRMICSTQLDRAHG---- 146 (400)
T ss_dssp SCEEEEEETTEEEEECTTSCSCEEEECS--CSCEEEEEEE-------TTTT---EEEEEETTTTEEEEEEC---------
T ss_pred cceeEEeccceeEEEccCCcceeEeccc--cCcceEEeee-------eccC---ceEEEecCCCeEEEEEcccCCC----
Confidence 3577777888999999987655444443 2358999998 4331 34443 3468888888763110
Q ss_pred CCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEE-EcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCC-
Q 001391 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL- 191 (1088)
Q Consensus 114 ~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg-s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~- 191 (1088)
.......+.........+++.+ .+..|+.+ ...+.|.+.++........+.... .....+++ +|
T Consensus 147 -------~~~~~~~~~~~~~~p~glavD~---~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~-~~P~~iav---dp~ 212 (400)
T 3p5b_L 147 -------VSSYDTVISRDIQAPDGLAVDW---IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG-SKPRAIVV---DPV 212 (400)
T ss_dssp --------CCCEEEECSSCSCEEEEEEET---TTTEEEEEETTTTEEEEECTTTCSEEEEEECSS-CCEEEEEE---ETT
T ss_pred -------CCcceEEEeCCCCCcccEEEEe---cCCceEEEECCCCeEEEEeCCCCceEEEEeCCC-CCcceEEE---ecc
Confidence 0011111222335678899987 55545444 557789998887654433332111 11233443 23
Q ss_pred CCcEEEEEe-cCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCE
Q 001391 192 EALRIASGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK 270 (1088)
Q Consensus 192 ~~~~l~sg~-~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~ 270 (1088)
.+.+..+-. ..+.|...++. ...........-....+|+++++++.
T Consensus 213 ~g~ly~td~~~~~~I~~~~~d---------------------------------G~~~~~~~~~~l~~P~glavd~~~~~ 259 (400)
T 3p5b_L 213 HGFMYWTDWGTPAKIKKGGLN---------------------------------GVDIYSLVTENIQWPNGITLDLLSGR 259 (400)
T ss_dssp TTEEEEEECSSSCCEEEEETT---------------------------------SCSCEEEECSSCSCEEEEEEETTTTE
T ss_pred cCeEEEEeCCCCCEEEEEeCC---------------------------------CCccEEEEECCCCceEEEEEEeCCCE
Confidence 233333322 23566666665 11111122333467899999988777
Q ss_pred EEEE-ECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEcc
Q 001391 271 LVSV-SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKE 345 (1088)
Q Consensus 271 l~s~-s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~ 345 (1088)
|..+ +..+.|...|+..... +.+. ...+.-.....+++. +.++.+-...+.|..++. +|+.+..+..
T Consensus 260 lY~aD~~~~~I~~~d~dG~~~------~~~~--~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~ 329 (400)
T 3p5b_L 260 LYWVDSKLHSISSIDVNGGNR------KTIL--EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAE 329 (400)
T ss_dssp EEEEETTTTEEEEEETTSCCC------EEEE--ECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEEC
T ss_pred EEEEECCCCEEEEEeCCCCcc------EEEE--eCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEec
Confidence 6555 4567899999865322 2221 111122234455655 556666677788888885 7766666543
No 281
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.51 E-value=1.1 Score=49.57 Aligned_cols=194 Identities=9% Similarity=-0.083 Sum_probs=110.7
Q ss_pred CcEEEEEEecccCCCCEEEEE-EcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEec
Q 001391 133 HWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasg-s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
..+..++|++ ..+.|+.. ...+.|..+++........+..... ....+++- ..++.+..+-...+.|.+.++.
T Consensus 73 ~~~~~l~~d~---~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~-~p~glavd--~~~g~ly~~d~~~~~I~~~~~d 146 (349)
T 3v64_C 73 ENAIALDFHH---RRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE-SPGGLAVD--WVHDKLYWTDSGTSRIEVANLD 146 (349)
T ss_dssp SCEEEEEEET---TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS-CCCEEEEE--TTTTEEEEEETTTTEEEEEETT
T ss_pred CceEEEEEec---cccEEEEEeccCCceEEEecCCCCceEEEeCCCC-CccEEEEe--cCCCeEEEEcCCCCeEEEEcCC
Confidence 4588999997 55555444 4678899999876654333222111 11123331 1234555555566788888876
Q ss_pred cCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEE-ECC-CcEEEEEcCCCc
Q 001391 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV-SDD-RSARIWEVRAEY 289 (1088)
Q Consensus 212 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~-s~D-g~v~iWd~~~~~ 289 (1088)
.......+...-.....++++|.+..|..+ ... +.|...++....
T Consensus 147 ---------------------------------G~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~ 193 (349)
T 3v64_C 147 ---------------------------------GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 193 (349)
T ss_dssp ---------------------------------SCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred ---------------------------------CCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC
Confidence 111122223344567899999976655444 444 678777776532
Q ss_pred ccCCCCceeeeceeeeccCcceEEEEEC--CCEE-EEEeCCCcEEEEcCCCceeEEEc-ccCCCCeEEEEEcCCCCEEEE
Q 001391 290 WKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFI-ITAGEDCTCRVWGSDGKQLKMIK-EHIGRGIWRCLYDSLSSLLVT 365 (1088)
Q Consensus 290 ~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l-~sg~~Dg~i~vWd~~~~~~~~~~-~h~~~~V~~l~~~~dg~~l~t 365 (1088)
. +. .....-.....++++ +..| ++-...+.|..++++|.....+. .... ....+++. ++.+.++
T Consensus 194 ~------~~----~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~-~P~giav~-~~~ly~t 261 (349)
T 3v64_C 194 R------RI----IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP-HPFAITVF-EDSLYWT 261 (349)
T ss_dssp C------EE----SCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS-SEEEEEEE-TTEEEEE
T ss_pred c------EE----EEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCC-CceEEEEE-CCEEEEe
Confidence 1 11 111222346788886 4444 44456678999999765544432 2222 46788883 4455556
Q ss_pred EeCCCCEEEEEc
Q 001391 366 AGFDSAIKVHQF 377 (1088)
Q Consensus 366 g~~Dg~I~iwd~ 377 (1088)
-...+.|...+.
T Consensus 262 d~~~~~V~~~~~ 273 (349)
T 3v64_C 262 DWHTKSINSANK 273 (349)
T ss_dssp ETTTTEEEEEET
T ss_pred cCCCCeEEEEEc
Confidence 556777777773
No 282
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.46 E-value=1.4 Score=47.89 Aligned_cols=222 Identities=8% Similarity=-0.100 Sum_probs=122.2
Q ss_pred EEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEE-EcCCcEEEEEcCC--
Q 001391 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISN-- 166 (1088)
Q Consensus 90 ~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg-s~Dg~V~iWd~~~-- 166 (1088)
.|..+..+.|+..++.... ....+ .....+..++|++ .++.|+.. ...+.|..+++..
T Consensus 3 ~ll~~~~~~I~~i~~~~~~---------------~~~~~-~~~~~p~g~~~d~---~~~~ly~~D~~~~~I~~~~~~g~~ 63 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSE---------------YTSLI-PNLRNVVALDTEV---ASNRIYWSDLSQRMICSTQLDRAH 63 (316)
T ss_dssp EEEEECBSSEEEEETTSCC---------------CEEEE-CSCSSEEEEEEET---TTTEEEEEETTTTEEEEEEC----
T ss_pred EEEEECCCeEEEEECCCcc---------------eEehh-cCCCceEEEEEEe---CCCEEEEEECCCCcEEEEECCCCC
Confidence 4555666778888887532 11112 2235678999998 66555544 4568899999876
Q ss_pred --CceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccc
Q 001391 167 --SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH 244 (1088)
Q Consensus 167 --~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 244 (1088)
......+..... ....+++- ..++.+.++-...+.|.+.++.
T Consensus 64 ~~~~~~~~~~~~~~-~p~glavd--~~~~~ly~~d~~~~~I~~~~~~--------------------------------- 107 (316)
T 1ijq_A 64 GVSSYDTVISRDIQ-APDGLAVD--WIHSNIYWTDSVLGTVSVADTK--------------------------------- 107 (316)
T ss_dssp ----CEEEECSSCS-CCCEEEEE--TTTTEEEEEETTTTEEEEEETT---------------------------------
T ss_pred CCcccEEEEeCCCC-CcCEEEEe--ecCCeEEEEECCCCEEEEEeCC---------------------------------
Confidence 221222211111 11223331 1234444555567788888775
Q ss_pred ceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECC--CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCE
Q 001391 245 TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD--RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSF 320 (1088)
Q Consensus 245 ~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~D--g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~ 320 (1088)
.......+...-.....++++|.+..|..+... +.|...++..... +.+ ....-.....++++ +..
T Consensus 108 g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~------~~~----~~~~~~~P~gla~d~~~~~ 177 (316)
T 1ijq_A 108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------YSL----VTENIQWPNGITLDLLSGR 177 (316)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE------EEE----ECSSCSCEEEEEEETTTTE
T ss_pred CCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe------EEE----EECCCCCceEEEEeccCCE
Confidence 111111222334567899999977766554432 5777777754211 111 11223456788887 445
Q ss_pred EE-EEeCCCcEEEEcCCCceeEEEccc--CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 321 II-TAGEDCTCRVWGSDGKQLKMIKEH--IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 321 l~-sg~~Dg~i~vWd~~~~~~~~~~~h--~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
|+ +-...+.|..++++|.....+... .......+++. .+.+.++-...+.|..++.
T Consensus 178 lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 178 LYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp EEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeC
Confidence 54 445667899999977555554321 11135678885 3555566666778888876
No 283
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.44 E-value=0.13 Score=63.82 Aligned_cols=200 Identities=10% Similarity=-0.020 Sum_probs=106.9
Q ss_pred CCCC-cEEEEEEe-cccCCCCEEEEEEc-C----CcEEEEEcCCC-ceEEEeccCCceeEEEEeeecCCCCCcEEEEEec
Q 001391 130 RLSH-WVFDVCFL-KVCNGNRSLAIGCS-D----NSIRVWDISNS-SIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (1088)
Q Consensus 130 ~h~~-~I~~v~f~-p~~~d~~~lasgs~-D----g~V~iWd~~~~-~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~ 201 (1088)
+|.- .+...+|+ | ||++||-+.. + .+|+++|+.++ +.+.. .......++.+ ++|+..|+....
T Consensus 170 ~~~~~~~~~~~~S~P---DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~---~~~~~~~~~~W---spDg~~l~y~~~ 240 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPP---EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD---KVSGTNGEIVW---GPDHTSLFYVTK 240 (751)
T ss_dssp TCSCCEEEEEEECTT---TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC---CEEEECSCCEE---CSSTTEEEEEEE
T ss_pred CCCeEEEeeeEecCC---CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc---cccCceeeEEE---ecCCCEEEEEEE
Confidence 4443 68889999 9 9998875533 2 25999999988 63211 00001112222 578877766655
Q ss_pred C-----CeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEe-CCCCCEEEEEEcCCCCEEEEEE
Q 001391 202 Y-----NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-GHEGSIFRIEWSSCGSKLVSVS 275 (1088)
Q Consensus 202 d-----g~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~v~~sp~g~~l~s~s 275 (1088)
+ ..|.++++.+. .......+. .+......+.|+|||++|+..+
T Consensus 241 d~~~~~~~v~~~~lgt~-------------------------------~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~ 289 (751)
T 2xe4_A 241 DETLRENKVWRHVMGKL-------------------------------QSEDVCLYEEHNPLFSAFMYKAADTNTLCIGS 289 (751)
T ss_dssp CTTCCEEEEEEEETTSC-------------------------------GGGCEEEEECCCTTCEEEEEECTTSSEEEEEE
T ss_pred CCCCCCCEEEEEECCCC-------------------------------chhcEEEEecCCCceEEEEEECCCCCEEEEEe
Confidence 4 25666666511 001112222 2334567889999999887655
Q ss_pred C---CCcEEEEEcCCCcccCCCCcee-eeceeeeccCcceEEEEEC-CCEEE-EEeCC--C--cEEEEcCCC-ceeEE-E
Q 001391 276 D---DRSARIWEVRAEYWKDSDSIEE-VGSSVLYGHNARVWDCCLT-DSFII-TAGED--C--TCRVWGSDG-KQLKM-I 343 (1088)
Q Consensus 276 ~---Dg~v~iWd~~~~~~~~~~~~~~-i~~~~~~~h~~~I~~v~~~-~~~l~-sg~~D--g--~i~vWd~~~-~~~~~-~ 343 (1088)
. ...|.++|+.++.. +. +. ..........+++.|+ +..|+ ....+ + .|..+++.. ..... +
T Consensus 290 ~~~~~~~l~~~d~~~~~~------~~~~~-~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~l 362 (751)
T 2xe4_A 290 QSPETAEVHLLDLRKGNA------HNTLE-IVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVL 362 (751)
T ss_dssp ECSSCEEEEEEESSSCTT------CCCEE-ESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEE
T ss_pred cCCCCceEEEEECCCCCC------CceeE-EeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeE
Confidence 2 34678888876421 11 01 0222334556777754 55444 44443 2 566666642 22222 2
Q ss_pred cccCC-CCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 344 KEHIG-RGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 344 ~~h~~-~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
-.+.. ..+..+.+. .+.++++...|+..++|-+
T Consensus 363 i~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 363 VDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp ECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEE
T ss_pred ECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence 22332 134555554 2345667777886666543
No 284
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.42 E-value=0.92 Score=51.77 Aligned_cols=117 Identities=12% Similarity=0.026 Sum_probs=66.2
Q ss_pred CEEEEEEcCCCCEE-EEEECCCcEEEEEcCC--CcccCCCCceeeece-eeec---------cCcceEEEEE--------
Q 001391 258 SIFRIEWSSCGSKL-VSVSDDRSARIWEVRA--EYWKDSDSIEEVGSS-VLYG---------HNARVWDCCL-------- 316 (1088)
Q Consensus 258 ~V~~v~~sp~g~~l-~s~s~Dg~v~iWd~~~--~~~~~~~~~~~i~~~-~~~~---------h~~~I~~v~~-------- 316 (1088)
.-..++|+|++++| ++-...+.|+.++... +... ....+.-. ...+ .-.....+++
T Consensus 274 ~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~---~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~ 350 (433)
T 4hw6_A 274 SNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLA---VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAG 350 (433)
T ss_dssp SCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBC---CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTT
T ss_pred CcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccC---cEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccc
Confidence 34579999999854 5555678898888753 2110 00011000 0000 1123567888
Q ss_pred -C--CCEEEEEeCCCcEEEEcCCCceeEEEcccC----------------CCCeEEEEEc-CCCCEEEEEeCCCCEEEEE
Q 001391 317 -T--DSFIITAGEDCTCRVWGSDGKQLKMIKEHI----------------GRGIWRCLYD-SLSSLLVTAGFDSAIKVHQ 376 (1088)
Q Consensus 317 -~--~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~----------------~~~V~~l~~~-~dg~~l~tg~~Dg~I~iwd 376 (1088)
. +.++++-...+.|+.++.+|.......... -..-+.|+++ +++.++++=...+.|+.++
T Consensus 351 dd~~g~lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 430 (433)
T 4hw6_A 351 EEDEYDFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA 430 (433)
T ss_dssp SSCCEEEEEEETTTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred cCCCCcEEEEECCCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence 5 345555566788999988775433331100 0126789999 6666666655667788776
Q ss_pred c
Q 001391 377 F 377 (1088)
Q Consensus 377 ~ 377 (1088)
+
T Consensus 431 ~ 431 (433)
T 4hw6_A 431 P 431 (433)
T ss_dssp E
T ss_pred c
Confidence 5
No 285
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.16 E-value=3.3 Score=49.46 Aligned_cols=171 Identities=13% Similarity=0.055 Sum_probs=89.6
Q ss_pred CCCceEEecCCCc--------eeeeeEEEEEeccCCCCCCCCEEEEEe--CCeEEEEECCCCeeEEEEeeeCCcceEEEE
Q 001391 3 KKDLSEWRLDVGQ--------YLGEISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1088)
Q Consensus 3 d~~i~iWdl~~g~--------~~~~V~~v~fs~~pd~~~~~~~laag~--d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~ 72 (1088)
.+.|+.-++.... ......+|+|+ +. +..|.... .+.|+.+++........+....-....+++
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~--~~----~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlA 90 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFV--FS----HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLA 90 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEE--TT----TTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEE
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEE--eC----CCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEE
Confidence 3567777877542 12446799999 86 55666655 488999998765321222211213578999
Q ss_pred ecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEE
Q 001391 73 CNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1088)
Q Consensus 73 ~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la 151 (1088)
+. +.++ .+..+ .+.+.|.+.+++... .+.+ +...-.....|++.| .+..|+
T Consensus 91 vD-------~~~~---~ly~~d~~~~~I~v~~~dG~~-------------~~~l--~~~~l~~P~~Iavdp---~~g~ly 142 (619)
T 3s94_A 91 CD-------WLGE---KLYWTDSETNRIEVSNLDGSL-------------RKVL--FWQELDQPRAIALDP---SSGFMY 142 (619)
T ss_dssp EE-------TTTT---EEEEEETTTTEEEEEETTSCS-------------CEEE--ECSSCSCCCCEEEET---TTTEEE
T ss_pred EE-------ecCC---EEEEEeCCCCEEEEEECCCCC-------------EEEE--EeCCCCCCceEEEec---CCCeEE
Confidence 98 5331 34433 347899999887321 1111 112334567899998 666555
Q ss_pred EEEc--CCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCC-CcEEEEEecCCeEEEEEec
Q 001391 152 IGCS--DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE-ALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 152 sgs~--Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~-~~~l~sg~~dg~I~vwd~~ 211 (1088)
.... .+.|...++............ ......+++ +++ +.+..+-...+.|...++.
T Consensus 143 ~tD~g~~~~I~r~~~dG~~~~~l~~~~-~~~P~Glal---d~~~~~LY~aD~~~~~I~~~~~d 201 (619)
T 3s94_A 143 WTDWGEVPKIERAGMDGSSRFIIINSE-IYWPNGLTL---DYEEQKLYWADAKLNFIHKSNLD 201 (619)
T ss_dssp EEECSSSCEEEEEETTSCSCEEEECSS-CSSEEEEEE---ETTTTEEEEEETTTCCEEEESSS
T ss_pred EeccCCCCEEEEEECCCCceEEEEeCC-CCCCcEEEE---EccCCEEEEEeCCCCeEEEecCC
Confidence 5542 356666666543222222111 111223333 233 3344444455677777765
No 286
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.13 E-value=0.98 Score=49.10 Aligned_cols=224 Identities=9% Similarity=-0.096 Sum_probs=124.3
Q ss_pred eEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEE-EEEcCCcEEEEEcCCC
Q 001391 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDNSIRVWDISNS 167 (1088)
Q Consensus 89 ~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la-sgs~Dg~V~iWd~~~~ 167 (1088)
..|..+....|+..+++.... . ....+. ....+..++|.+ .++.|+ +-...+.|..+++...
T Consensus 5 p~ll~~~~~~I~~i~l~~~~~---~-------~~~~~~----~~~~~~~ld~d~---~~~~lyw~D~~~~~I~r~~~~g~ 67 (318)
T 3sov_A 5 PLLLYANRRDLRLVDATNGKE---N-------ATIVVG----GLEDAAAVDFVF---SHGLIYWSDVSEEAIKRTEFNKT 67 (318)
T ss_dssp CEEEEECEEEEEEEETTCTTS---C-------CEEEEE----EEEEEEEEEEEG---GGTEEEEEETTTTEEEEEETTSS
T ss_pred cEEEEEccCeEEEEECCCCce---E-------EEEEec----CCCccEEEEEEe---CCCEEEEEECCCCcEEEEEccCC
Confidence 456666678899999874320 0 011111 123577899988 555444 4455778999998765
Q ss_pred ceE-EEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccce
Q 001391 168 SII-LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (1088)
Q Consensus 168 ~~~-~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 246 (1088)
... ..+..... ....+++- ...+.+..+-...+.|.++++. ..
T Consensus 68 ~~~~~~~~~~l~-~p~glavd--~~~g~ly~~d~~~~~I~~~~~d---------------------------------G~ 111 (318)
T 3sov_A 68 ESVQNVVVSGLL-SPDGLACD--WLGEKLYWTDSETNRIEVSNLD---------------------------------GS 111 (318)
T ss_dssp SCCCEEEEECCS-CCCEEEEE--TTTTEEEEEETTTTEEEEEETT---------------------------------SC
T ss_pred CceEEEEcCCCC-CccEEEEE--cCCCeEEEEECCCCEEEEEECC---------------------------------CC
Confidence 321 11111100 01122221 1244555555566788888876 11
Q ss_pred eeeEEEeCCCCCEEEEEEcCCCCEEEEEEC--CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEE-
Q 001391 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSD--DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFI- 321 (1088)
Q Consensus 247 ~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~--Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l- 321 (1088)
.....+........++++.|.+.+|..+.. .+.|...++..... +. .....-.....++++ +..|
T Consensus 112 ~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~------~~----~~~~~l~~Pnglavd~~~~~lY 181 (318)
T 3sov_A 112 LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR------FI----IINSEIYWPNGLTLDYEEQKLY 181 (318)
T ss_dssp SCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC------EE----EECSSCSCEEEEEEETTTTEEE
T ss_pred cEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe------EE----EEECCCCCccEEEEeccCCEEE
Confidence 111122244456789999997766655542 46777777764221 11 111222345788887 4444
Q ss_pred EEEeCCCcEEEEcCCCceeEEEcc-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 322 ITAGEDCTCRVWGSDGKQLKMIKE-HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 322 ~sg~~Dg~i~vWd~~~~~~~~~~~-h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
++=...+.|..++++|.....+.. ... ....+++..+ .++.+-...+.|..++.
T Consensus 182 ~aD~~~~~I~~~d~dG~~~~~~~~~~~~-~P~glav~~~-~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 182 WADAKLNFIHKSNLDGTNRQAVVKGSLP-HPFALTLFED-ILYWTDWSTHSILACNK 236 (318)
T ss_dssp EEETTTTEEEEEETTSCSCEEEECSCCS-CEEEEEEETT-EEEEEETTTTEEEEEET
T ss_pred EEECCCCEEEEEcCCCCceEEEecCCCC-CceEEEEeCC-EEEEEecCCCeEEEEEC
Confidence 444566889999997655554432 223 4667887643 45556556778888887
No 287
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.10 E-value=2.4 Score=47.68 Aligned_cols=222 Identities=7% Similarity=-0.104 Sum_probs=124.4
Q ss_pred eEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEE-EcCCcEEEEEcCCC
Q 001391 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNS 167 (1088)
Q Consensus 89 ~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg-s~Dg~V~iWd~~~~ 167 (1088)
..|..+....|+..++.... ... +......+..++|++ ..+.|+.. ...+.|+.+++...
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~-------------~~~---~~~~~~~~~~l~~d~---~~~~lywsD~~~~~I~~~~~~g~ 144 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSE-------------YTS---LIPNLRNVVALDTEV---ASNRIYWSDLSQRMICSTQLDRA 144 (400)
T ss_dssp CEEEEEETTEEEEECTTSCS-------------CEE---EECSCSCEEEEEEET---TTTEEEEEETTTTEEEEEEC---
T ss_pred ceeEEeccceeEEEccCCcc-------------eeE---eccccCcceEEeeee---ccCceEEEecCCCeEEEEEcccC
Confidence 45666667888888887432 111 122346789999998 66655554 45678888888652
Q ss_pred c----eEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccc
Q 001391 168 S----IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (1088)
Q Consensus 168 ~----~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 243 (1088)
. ....+.... .....+++- ...+.+.++-...+.|.+.++.
T Consensus 145 ~~~~~~~~~~~~~~-~~p~glavD--~~~~~lY~~d~~~~~I~~~~~~-------------------------------- 189 (400)
T 3p5b_L 145 HGVSSYDTVISRDI-QAPDGLAVD--WIHSNIYWTDSVLGTVSVADTK-------------------------------- 189 (400)
T ss_dssp ---CCCEEEECSSC-SCEEEEEEE--TTTTEEEEEETTTTEEEEECTT--------------------------------
T ss_pred CCCCcceEEEeCCC-CCcccEEEE--ecCCceEEEECCCCeEEEEeCC--------------------------------
Confidence 1 222222111 112233331 1234455555556777777765
Q ss_pred cceeeeEEEeCCCCCEEEEEEcCCCCEEEEEEC--CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CC
Q 001391 244 HTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD--DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS 319 (1088)
Q Consensus 244 ~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~--Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~ 319 (1088)
.......+...-....+|++.|.+.+|..+.. .+.|...++..... .. .....-.....++++ +.
T Consensus 190 -g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~------~~----~~~~~l~~P~glavd~~~~ 258 (400)
T 3p5b_L 190 -GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------YS----LVTENIQWPNGITLDLLSG 258 (400)
T ss_dssp -TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC------EE----EECSSCSCEEEEEEETTTT
T ss_pred -CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc------EE----EEECCCCceEEEEEEeCCC
Confidence 22222223334456889999997766655442 36788777765321 11 112222456788887 45
Q ss_pred EEEEE-eCCCcEEEEcCCCceeEEEccc---CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 320 FIITA-GEDCTCRVWGSDGKQLKMIKEH---IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 320 ~l~sg-~~Dg~i~vWd~~~~~~~~~~~h---~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
.|+.+ ...+.|...+++|.....+... -. ...++++. .+.++++-...+.|..++.
T Consensus 259 ~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~-~P~gl~v~-~~~lywtd~~~~~V~~~~~ 318 (400)
T 3p5b_L 259 RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA-HPFSLAVF-EDKVFWTDIINEAIFSANR 318 (400)
T ss_dssp EEEEEETTTTEEEEEETTSCCCEEEEECSSTTS-SEEEEEEE-TTEEEEEESSSCSEEEEES
T ss_pred EEEEEECCCCEEEEEeCCCCccEEEEeCCCCCC-CCEEEEEe-CCEEEEecCCCCeEEEEEc
Confidence 55544 4567899999977655554321 22 35577774 3345566666778888874
No 288
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.02 E-value=0.35 Score=59.79 Aligned_cols=113 Identities=7% Similarity=-0.019 Sum_probs=65.6
Q ss_pred CCCC-CEEEEEEc-CCCCEEEEEEC-CC----cEEEEEcCCC-cccCCCCceeeeceeeeccCcceEEEEEC--CCEEEE
Q 001391 254 GHEG-SIFRIEWS-SCGSKLVSVSD-DR----SARIWEVRAE-YWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIIT 323 (1088)
Q Consensus 254 gh~~-~V~~v~~s-p~g~~l~s~s~-Dg----~v~iWd~~~~-~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~s 323 (1088)
+|.- .+...+|| |||++|+-+.. +| .|+++|+.++ +. .. . .+.. ....+.|+ +..|+.
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-----l~--~--~~~~---~~~~~~WspDg~~l~y 237 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-----IA--D--KVSG---TNGEIVWGPDHTSLFY 237 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-----CC--C--CEEE---ECSCCEECSSTTEEEE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-----CC--c--cccC---ceeeEEEecCCCEEEE
Confidence 3443 67889999 99998875433 22 5999999886 42 00 0 1111 12356777 445555
Q ss_pred EeCC-----CcEEEEcC-CCc--eeEEEcccCCCCeEEEEEcCCCCEEEEEeC---CCCEEEEEcC
Q 001391 324 AGED-----CTCRVWGS-DGK--QLKMIKEHIGRGIWRCLYDSLSSLLVTAGF---DSAIKVHQFQ 378 (1088)
Q Consensus 324 g~~D-----g~i~vWd~-~~~--~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~---Dg~I~iwd~~ 378 (1088)
...| ..|.++++ ++. ....+......-..++.++|||++|+.... ...|.++|+.
T Consensus 238 ~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 238 VTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp EEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred EEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 5544 25777887 332 122332222223567899999998776553 2345566664
No 289
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=95.83 E-value=4.5 Score=49.69 Aligned_cols=237 Identities=8% Similarity=-0.077 Sum_probs=124.4
Q ss_pred CEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCC
Q 001391 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQY 114 (1088)
Q Consensus 36 ~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~ 114 (1088)
.+|+......|+..++........+... ..+.+|+|. +..+ .++.+ ...+.|+.+++.....
T Consensus 396 p~Ll~an~~~Ir~i~l~~~~~~~l~~~~--~~~~gl~~d-------~~~~---~lY~sD~~~~~I~~~~l~g~~~----- 458 (791)
T 3m0c_C 396 AYLFFTNRHEVRKMTLDRSEYTSLIPNL--RNVVALDTE-------VASN---RIYWSDLSQRMICSTQLDRAHG----- 458 (791)
T ss_dssp CEEEEECBSSEEEECTTSCCCEEEECSC--SSEEEEEEE-------TTTT---EEEEEETTTTEEEEEEC----------
T ss_pred cccccccccceeEeeccCCcceeeecCC--CceEEEeec-------ccCC---eeEEeeccceeEEEEeccCCCC-----
Confidence 4666666678888888766554444432 257899998 4321 34433 3468888888763210
Q ss_pred CCccccccceeeeccCCCCcEEEEEEecccCCCCEEE-EEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCC-
Q 001391 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE- 192 (1088)
Q Consensus 115 ~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~la-sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~- 192 (1088)
.......+.........|++.+ .++.|+ +-...+.|.+.++........+... ......+++ ++.
T Consensus 459 ------~~~~~~vi~~~l~~P~GLAvD~---~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~-l~~P~gIaV---Dp~~ 525 (791)
T 3m0c_C 459 ------VSSYDTVISRDIQAPDGLAVDW---IHSNIYWTDSVLGTVSVADTKGVKRKTLFREN-GSKPRAIVV---DPVH 525 (791)
T ss_dssp ---------CEEEECSSCSCCCEEEEET---TTTEEEEEETTTTEEEEEETTSSSEEEEEECT-TCCEEEEEE---ETTT
T ss_pred ------CcceeEEEecCCCCcceeeeee---cCCcEEEEecCCCeEEEEeCCCCeEEEEEeCC-CCCcceEEE---ecCC
Confidence 0011122222335567899988 665444 4456788999998755433222211 111234444 233
Q ss_pred CcEEEEEec-CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEE
Q 001391 193 ALRIASGTI-YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (1088)
Q Consensus 193 ~~~l~sg~~-dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l 271 (1088)
+.+..+-.. .+.|.+.++. .......+...-....+|++++.++.|
T Consensus 526 g~LYwtD~g~~~~I~~~~~d---------------------------------G~~~~~lv~~~l~~P~GLavD~~~~~L 572 (791)
T 3m0c_C 526 GFMYWTDWGTPAKIKKGGLN---------------------------------GVDIYSLVTENIQWPNGITLDLLSGRL 572 (791)
T ss_dssp TEEEEEECSSSCEEEEEETT---------------------------------SCCEEEEECSSCSCEEEEEEETTTTEE
T ss_pred CCEEEecCCCCCeEEEEecC---------------------------------CCceEEEEeCCCCCceEEEEecCCCeE
Confidence 333333222 2566666665 111222223334678999999877766
Q ss_pred EEE-ECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCC-EEEEEeCCCcEEEEcC-CCceeEEE
Q 001391 272 VSV-SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDS-FIITAGEDCTCRVWGS-DGKQLKMI 343 (1088)
Q Consensus 272 ~s~-s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~-~l~sg~~Dg~i~vWd~-~~~~~~~~ 343 (1088)
..+ .....|...++..... ..+. ...+.-.....+++.+. ++++-...+.|...+. +|+.+..+
T Consensus 573 YwaD~~~~~I~~~d~dG~~~------~~v~--~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 573 YWVDSKLHSISSIDVNGGNR------KTIL--EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEETTTTEEEEEETTSCSC------EEEE--ECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEEeCCCCcEEEEecCCCce------EEEe--cCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 555 4456788888865422 1111 11111223345555543 4444445566766664 55544444
No 290
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.80 E-value=2.6 Score=45.12 Aligned_cols=264 Identities=11% Similarity=0.082 Sum_probs=150.8
Q ss_pred CCCceEEecCCCce--eeeeE--EEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEeccccc
Q 001391 3 KKDLSEWRLDVGQY--LGEIS--ALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINC 78 (1088)
Q Consensus 3 d~~i~iWdl~~g~~--~~~V~--~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~ 78 (1088)
+..|.|-|+..+.. ..|+. +.-.+ |. .+.||.-.+.+|+|+|+++.+.+..+.-.+ .|.--.|-
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~AdsAIMn--P~----~~ViALrag~~LQiFnletK~klks~~~~e--~VvfWkWi---- 115 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPISADSAIMN--PA----SKVIALKAGKTLQIFNIEMKSKMKAHTMTD--DVTFWKWI---- 115 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECCCSEEEEC--SS----SSEEEEEETTEEEEEETTTTEEEEEEECSS--CEEEEEEC----
T ss_pred CCEEEEEECCCCCCccccccccceeeeC--CC----ccEEEEecCCeEEEechHHhhhhcceecCC--ccEEEEec----
Confidence 34577788887652 12333 22346 76 678888778999999999999999888644 46666665
Q ss_pred ccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCC----CCcEEEEEEecccCCCCEEEEEE
Q 001391 79 TEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRL----SHWVFDVCFLKVCNGNRSLAIGC 154 (1088)
Q Consensus 79 ~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h----~~~I~~v~f~p~~~d~~~lasgs 154 (1088)
.+ ..|+.-.+..|.-|+++... .+.+.+..| ...|..-..++ +.++++..|
T Consensus 116 ---s~-----~~L~lVT~taVyHWs~~~~s--------------~P~kvFdR~~~L~~~QIInY~~d~---~~kW~~l~G 170 (365)
T 2xzh_A 116 ---SL-----NTVALVTDNAVYHWSMEGES--------------QPVKMFDRHSSLAGCQIINYRTDA---KQKWLLLTG 170 (365)
T ss_dssp ---SS-----SEEEEEESSEEEEEESSTTC--------------CCEEEEECCGGGTTCEEEEEEECT---TSCEEEEEE
T ss_pred ---CC-----CeEEEEcCCcEEEEcccCCC--------------CCceeeecchhcccceEEEEEECC---CCCEEEEEe
Confidence 44 67888888999999997532 122222222 35677777777 777665544
Q ss_pred cCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCC
Q 001391 155 SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF 234 (1088)
Q Consensus 155 ~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~ 234 (1088)
-. . .++ .+ .|.+.+|..+
T Consensus 171 I~--------------------------~-------~~~-~v-----~G~mQLYS~e----------------------- 188 (365)
T 2xzh_A 171 IS--------------------------A-------QQN-RV-----VGAMQLYSVD----------------------- 188 (365)
T ss_dssp EE--------------------------E-------ETT-EE-----EEEEEEEETT-----------------------
T ss_pred Ee--------------------------c-------cCC-cc-----ceeEEEEeec-----------------------
Confidence 10 0 001 01 1334444443
Q ss_pred ceeEecccccceeeeEEEeCCCCCEEEEEEcC--CC-CEEEEEEC---CCcEEEEEcCCCc-ccCCCCceeeeceeeecc
Q 001391 235 KCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS--CG-SKLVSVSD---DRSARIWEVRAEY-WKDSDSIEEVGSSVLYGH 307 (1088)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp--~g-~~l~s~s~---Dg~v~iWd~~~~~-~~~~~~~~~i~~~~~~~h 307 (1088)
.+.-+.+.||...-..+.+.- .. ..++.+.. -+.+++-++.... ...+...+.+. .....
T Consensus 189 -----------r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vd--i~fpp 255 (365)
T 2xzh_A 189 -----------RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVD--VFFPP 255 (365)
T ss_dssp -----------TTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEE--ECCCT
T ss_pred -----------ccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccce--eeCCc
Confidence 112223333332221111110 00 11111111 1467777775431 10011111121 12222
Q ss_pred ---CcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 308 ---NARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 308 ---~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
..-..++..+ -..++.-..-|.+.+||+ +|.++..-+-... +|..-+...+..-++...+.|.|.--.++.
T Consensus 256 ea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d-~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 256 EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp TCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEEEGGGTEEEEEETTCEEEEEEECT
T ss_pred cccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCC-ceEEecccCCCCcEEEEcCCCEEEEEEECc
Confidence 3345567777 468888899999999999 8888877665555 688777766655577777899887777754
No 291
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.64 E-value=0.8 Score=49.10 Aligned_cols=103 Identities=15% Similarity=0.159 Sum_probs=53.8
Q ss_pred CCCEEEEEECC-----CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCC-----CcEEEEcCC
Q 001391 267 CGSKLVSVSDD-----RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGED-----CTCRVWGSD 336 (1088)
Q Consensus 267 ~g~~l~s~s~D-----g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~D-----g~i~vWd~~ 336 (1088)
+++.++.|+.+ ..+..||+.+.+. +.+. .+.........+.+.+.+++.|+.+ ..+.+||..
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W------~~~~--~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 230 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHW------TNVT--PMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIR 230 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEE------EEEC--CCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcE------EeCC--CCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCC
Confidence 56666666654 4588899887654 2221 1111111223344456777777764 468889985
Q ss_pred CceeEEEccc-CCCCeEEEEEcCCCCEEEEEeCCC-----CEEEEEcC
Q 001391 337 GKQLKMIKEH-IGRGIWRCLYDSLSSLLVTAGFDS-----AIKVHQFQ 378 (1088)
Q Consensus 337 ~~~~~~~~~h-~~~~V~~l~~~~dg~~l~tg~~Dg-----~I~iwd~~ 378 (1088)
...-..+... ..+.-.+++.. ++++++.||.++ .+.+||+.
T Consensus 231 ~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~ 277 (301)
T 2vpj_A 231 TDSWTTVTSMTTPRCYVGATVL-RGRLYAIAGYDGNSLLSSIECYDPI 277 (301)
T ss_dssp TTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSSBEEEEEEEETT
T ss_pred CCcEEECCCCCCcccceeEEEE-CCEEEEEcCcCCCcccccEEEEcCC
Confidence 4444433221 11111122222 566777777653 45566664
No 292
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=95.51 E-value=3.2 Score=45.09 Aligned_cols=205 Identities=8% Similarity=0.080 Sum_probs=119.1
Q ss_pred eEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEeccc-CCCC---E-EEEEEc--CCcEEE
Q 001391 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC-NGNR---S-LAIGCS--DNSIRV 161 (1088)
Q Consensus 89 ~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~-~d~~---~-lasgs~--Dg~V~i 161 (1088)
.+|++...+-+.+||+. .+.++.+.. +.++.+.+-|.- -.++ + +++... +++|++
T Consensus 42 ~ii~t~k~~gL~Vydl~----------------G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~v 103 (355)
T 3amr_A 42 KLITTNKKSGLVVYSLD----------------GKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEI 103 (355)
T ss_dssp EEEEEETTTEEEEEETT----------------SCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEE
T ss_pred EEEEEcCCCCEEEEcCC----------------CcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEE
Confidence 56666668899999995 456666654 567777776610 0122 2 233333 589999
Q ss_pred EEcC--CCceEEEecc---C--Cc-eeEEEEeeecCCCCC-cEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCC
Q 001391 162 WDIS--NSSIILEVHS---P--ER-CLLYSMKLWGDNLEA-LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (1088)
Q Consensus 162 Wd~~--~~~~~~~~~~---~--~~-~~~~s~~~~~~s~~~-~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~ 232 (1088)
|++. +++ +..+.. + .. ...|.+++......+ .+++....+|.+..|++......
T Consensus 104 f~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g---------------- 166 (355)
T 3amr_A 104 YAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNG---------------- 166 (355)
T ss_dssp EEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS----------------
T ss_pred EEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCC----------------
Confidence 9774 333 444422 2 11 334555554433334 36788888899999998511000
Q ss_pred CCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeecc-Ccce
Q 001391 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH-NARV 311 (1088)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h-~~~I 311 (1088)
....+.++++.- .+.+..+...+...+|..+-++.-|..++...... ...+.+.. .-.++ ...+
T Consensus 167 ----------~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~---~~~~~v~~-~~~g~l~aDv 231 (355)
T 3amr_A 167 ----------YISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGG---SNGTVIDR-ADGRHLTRDI 231 (355)
T ss_dssp ----------CEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSC---SCCEEEEE-BSSSSBCSCE
T ss_pred ----------cccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCC---CCceEEEE-ecCCccccCc
Confidence 014556666654 45788999999999999999986655555432210 00123321 11222 2357
Q ss_pred EEEEEC----C-CEEEEEe-CCCcEEEEcCC--CceeEEE
Q 001391 312 WDCCLT----D-SFIITAG-EDCTCRVWGSD--GKQLKMI 343 (1088)
Q Consensus 312 ~~v~~~----~-~~l~sg~-~Dg~i~vWd~~--~~~~~~~ 343 (1088)
-.+++. + .+|+..+ .+.++.+||.. .+.+..|
T Consensus 232 EGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 232 EGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred ceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 777763 2 3555444 67899999983 3444444
No 293
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.42 E-value=0.86 Score=49.04 Aligned_cols=101 Identities=14% Similarity=0.098 Sum_probs=52.4
Q ss_pred eEEEEEC---CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcC----CcEEE
Q 001391 89 FEVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD----NSIRV 161 (1088)
Q Consensus 89 ~~la~~g---d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~D----g~V~i 161 (1088)
.+++.+| .+.+.+||..... ...+..+......-..+. - ++.+++.|+.+ +.+.+
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~-------------W~~~~~~p~~r~~~~~~~--~---~~~lyv~GG~~~~~~~~~~~ 74 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYS-------------WTDIRCPFEKRRDAACVF--W---DNVVYILGGSQLFPIKRMDC 74 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTE-------------EEECCCCSCCCBSCEEEE--E---TTEEEEECCBSSSBCCEEEE
T ss_pred eEEEEeCCCCCceEEEecCCCCC-------------EecCCCCCcccceeEEEE--E---CCEEEEEeCCCCCCcceEEE
Confidence 5566665 3578888877532 233332222221112222 2 66777777755 67889
Q ss_pred EEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecC------CeEEEEEec
Q 001391 162 WDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY------NEIIVWKVD 211 (1088)
Q Consensus 162 Wd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d------g~I~vwd~~ 211 (1088)
||..+.+....-..+......++.. .++.+++.|+.+ ..+.+||..
T Consensus 75 ~d~~~~~W~~~~~~p~~r~~~~~~~----~~~~iyv~GG~~~~~~~~~~~~~~d~~ 126 (306)
T 3ii7_A 75 YNVVKDSWYSKLGPPTPRDSLAACA----AEGKIYTSGGSEVGNSALYLFECYDTR 126 (306)
T ss_dssp EETTTTEEEEEECCSSCCBSCEEEE----ETTEEEEECCBBTTBSCCCCEEEEETT
T ss_pred EeCCCCeEEECCCCCccccceeEEE----ECCEEEEECCCCCCCcEeeeEEEEeCC
Confidence 9998876543322222111122222 245566666654 457777766
No 294
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=95.37 E-value=3.7 Score=46.61 Aligned_cols=154 Identities=8% Similarity=0.001 Sum_probs=87.3
Q ss_pred eeEEEEEeccC-CCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC-
Q 001391 19 EISALCFVHLP-SHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG- 95 (1088)
Q Consensus 19 ~V~~v~fs~~p-d~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g- 95 (1088)
....|+++ | + ...|.+.. ++.|+.+|..++++..... ......+++|+ ++++ .++++-.
T Consensus 138 ~P~~lavd--p~~----~g~Lyv~d~~~~I~~id~~~~~v~~~~~--~~~~P~~ia~d-------~~G~---~lyvad~~ 199 (430)
T 3tc9_A 138 GAVWLSFD--PKN----HNHLYLVGEQHPTRLIDFEKEYVSTVYS--GLSKVRTICWT-------HEAD---SMIITNDQ 199 (430)
T ss_dssp CCCEEEEE--TTE----EEEEEEEEBTEEEEEEETTTTEEEEEEC--CCSCEEEEEEC-------TTSS---EEEEEECC
T ss_pred CCCEEEEC--CCC----CCeEEEEeCCCcEEEEECCCCEEEEEec--CCCCcceEEEe-------CCCC---EEEEEeCC
Confidence 35688898 7 4 34455544 4889999998776544433 33358899999 7772 3554433
Q ss_pred CC----EEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCC-EEEEEEcCCcEEEEEcCCCceE
Q 001391 96 EK----RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSII 170 (1088)
Q Consensus 96 d~----~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~-~lasgs~Dg~V~iWd~~~~~~~ 170 (1088)
++ .+.+.+.. .. ......+.. ......++++| ++. ++++-..++.|..++...+...
T Consensus 200 ~~~~~~~v~~~~~~-g~-------------~~~~~~l~~-~~~p~giavdp---~~g~lyv~d~~~~~V~~~~~~~~~~~ 261 (430)
T 3tc9_A 200 NNNDRPNNYILTRE-SG-------------FKVITELTK-GQNCNGAETHP---INGELYFNSWNAGQVFRYDFTTQETT 261 (430)
T ss_dssp SCTTSEEEEEEEGG-GT-------------SCSEEEEEE-CSSCCCEEECT---TTCCEEEEETTTTEEEEEETTTTEEE
T ss_pred CCcccceEEEEeCC-Cc-------------eeeeeeecc-CCCceEEEEeC---CCCEEEEEECCCCEEEEEECCCCcEE
Confidence 22 23333322 11 110111111 23356788888 544 4444446788999999876542
Q ss_pred EEeccCCceeEEEEeeecCCCCCc-EEEEEecCCeEEEEEec
Q 001391 171 LEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 171 ~~~~~~~~~~~~s~~~~~~s~~~~-~l~sg~~dg~I~vwd~~ 211 (1088)
.....+.......+++ ++++. +.++-...+.|..++..
T Consensus 262 ~~~~~~~~~~P~gia~---~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 262 PLFTIQDSGWEFHIQF---HPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp EEEECSSSSCCEEEEE---CTTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEcCCCCcceeEEE---cCCCCEEEEEECCCCEEEEEeCC
Confidence 2222222122334554 57788 45555667889998876
No 295
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.35 E-value=1.1 Score=48.22 Aligned_cols=104 Identities=12% Similarity=0.106 Sum_probs=53.8
Q ss_pred CCCEEEEEECC-------CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCC-----CcEEEEc
Q 001391 267 CGSKLVSVSDD-------RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGED-----CTCRVWG 334 (1088)
Q Consensus 267 ~g~~l~s~s~D-------g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~D-----g~i~vWd 334 (1088)
+++.++.|+.+ ..+..||+.+.+. ..+. .+.........+.+.+.+++.|+.+ ..+.+||
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W------~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd 226 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEW------TYIA--EMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYD 226 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTEE------EEEC--CCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEE
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCcE------EECC--CCccccccccEEEECCEEEEECCCCCCcccceEEEEe
Confidence 45555555432 3588899887654 2221 1111111223344457777777765 3688888
Q ss_pred CCCceeEEEcccCC-CCeEEEEEcCCCCEEEEEeCCC-----CEEEEEcCC
Q 001391 335 SDGKQLKMIKEHIG-RGIWRCLYDSLSSLLVTAGFDS-----AIKVHQFQA 379 (1088)
Q Consensus 335 ~~~~~~~~~~~h~~-~~V~~l~~~~dg~~l~tg~~Dg-----~I~iwd~~~ 379 (1088)
.....-..+..... +.-.+++. -++.+++.||.++ .+.+||+..
T Consensus 227 ~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~ 276 (302)
T 2xn4_A 227 PTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTT 276 (302)
T ss_dssp TTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred CCCCCEeeCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCC
Confidence 85444444332111 11112222 2567777777654 467777754
No 296
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.29 E-value=3.9 Score=43.80 Aligned_cols=211 Identities=9% Similarity=0.095 Sum_probs=130.0
Q ss_pred CEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccC
Q 001391 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP 176 (1088)
Q Consensus 97 ~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~ 176 (1088)
.+|.|.|+.... ...+.....+ +.-.+| ..+.||.-. ..+++++|+++.+.++...-+
T Consensus 49 ~~VvIiDl~n~~--------------~~~Rrpi~Ad----sAIMnP---~~~ViALra-g~~LQiFnletK~klks~~~~ 106 (365)
T 2xzh_A 49 AQVVIIDMNDPS--------------NPIRRPISAD----SAIMNP---ASKVIALKA-GKTLQIFNIEMKSKMKAHTMT 106 (365)
T ss_dssp EEEEEEETTSTT--------------SCEEEECCCS----EEEECS---SSSEEEEEE-TTEEEEEETTTTEEEEEEECS
T ss_pred CEEEEEECCCCC--------------Cccccccccc----eeeeCC---CccEEEEec-CCeEEEechHHhhhhcceecC
Confidence 578888888643 1222222222 344588 888888876 788999999999999888777
Q ss_pred CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCC
Q 001391 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (1088)
Q Consensus 177 ~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 256 (1088)
+.-..|. +-+++..-|++. ..|+-|++.. ...+.+.|..|.
T Consensus 107 e~VvfWk----Wis~~~L~lVT~---taVyHWs~~~--------------------------------~s~P~kvFdR~~ 147 (365)
T 2xzh_A 107 DDVTFWK----WISLNTVALVTD---NAVYHWSMEG--------------------------------ESQPVKMFDRHS 147 (365)
T ss_dssp SCEEEEE----ECSSSEEEEEES---SEEEEEESST--------------------------------TCCCEEEEECCG
T ss_pred CccEEEE----ecCCCeEEEEcC---CcEEEEcccC--------------------------------CCCCceeeecch
Confidence 6533333 124444445554 6799999871 223444444442
Q ss_pred ----CCEEEEEEcCCCCEEEEEE-------CCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC----C-E
Q 001391 257 ----GSIFRIEWSSCGSKLVSVS-------DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD----S-F 320 (1088)
Q Consensus 257 ----~~V~~v~~sp~g~~l~s~s-------~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~----~-~ 320 (1088)
..|..-..+++.++++..+ -.|.+.+|..+.+.. ..+.||.+....+...+ . +
T Consensus 148 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-----------Q~ieGhaa~F~~~~~~g~~~~~~l 216 (365)
T 2xzh_A 148 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-----------QPIEGHAASFAQFKMEGNAEESTL 216 (365)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-----------EEECCSEEEEEEECCTTCSSCEEE
T ss_pred hcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccc-----------ceeeeeeeeeEEEecCCCCCCceE
Confidence 4577777788888765433 236788898877533 26778866655554442 1 3
Q ss_pred EEEEeCC---CcEEEEcCC----Cc------eeEEEcc--cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 321 IITAGED---CTCRVWGSD----GK------QLKMIKE--HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 321 l~sg~~D---g~i~vWd~~----~~------~~~~~~~--h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
+..+... +.+++-++. +. .+..+-. ...+---++..++.-..+..-..-|.|.+||+.+
T Consensus 217 f~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleT 290 (365)
T 2xzh_A 217 FCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET 290 (365)
T ss_dssp EEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT
T ss_pred EEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEccc
Confidence 3333322 588888872 21 1111111 1112233777788777888889999999999964
No 297
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.27 E-value=0.53 Score=52.34 Aligned_cols=117 Identities=11% Similarity=0.121 Sum_probs=79.4
Q ss_pred CCEEEEEeCCeEEEEECCCCeeEEEEeeeC---CcceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCC
Q 001391 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFH---GIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPN 111 (1088)
Q Consensus 35 ~~~laag~d~~I~vwd~~tg~~~~~~~~~~---~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~ 111 (1088)
+.-|+...++.||.-++..+..-+.+.... -..|+.+..+ |+| .+||..|+..|.|-.+..+....
T Consensus 32 ~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlS-------psG----~lLAl~g~~~V~Vv~LP~~~~~~ 100 (452)
T 3pbp_A 32 GTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISS-------TSG----DLLCLFNDNEIFVMEVPWGYSNV 100 (452)
T ss_dssp TTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEEC-------TTS----SEEEEECSSEEEEEECCTTCSCC
T ss_pred CCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEEC-------CCC----CEEEEecCCeEEEEEecCccccC
Confidence 566777777888888887544344444431 1147889998 888 89999999999999998432111
Q ss_pred CCCCCccc-cccceeeecc------CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC
Q 001391 112 SQYQPETC-VNLSLVQSLP------RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (1088)
Q Consensus 112 ~~~~~~~~-~~~~~~~~l~------~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~ 166 (1088)
.. +.. ...+ .+++. .....|..+.|+|....+..|++-..|++||+||+..
T Consensus 101 ~~---~~~~~~~q-~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 101 ED---VSIQDAFQ-IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp CC---HHHHHTTE-EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred cc---cccccccc-eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 10 000 0011 11111 1357899999999776778999999999999999975
No 298
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.26 E-value=0.9 Score=49.17 Aligned_cols=94 Identities=12% Similarity=0.145 Sum_probs=48.0
Q ss_pred CCCEEEEEEC------CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCC-----cEEEEcC
Q 001391 267 CGSKLVSVSD------DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDC-----TCRVWGS 335 (1088)
Q Consensus 267 ~g~~l~s~s~------Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg-----~i~vWd~ 335 (1088)
+++.++.|+. -..+.+||..+.+. +.+. .+......-.++.+.+.+++.|+.++ .+.+||.
T Consensus 148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W------~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 219 (315)
T 4asc_A 148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEW------KELA--PMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSI 219 (315)
T ss_dssp TTEEEEECCBCTTSCBCCCEEEEETTTTEE------EECC--CCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEET
T ss_pred CCEEEEEeCCCCCCcccceEEEEeCCCCeE------EECC--CCCCchhceEEEEECCEEEEEeccCCCCccceEEEEEC
Confidence 4556666655 24688899887644 2221 11111112234445577778887665 4778888
Q ss_pred CCceeEEEccc-CCCCeEEEEEcCCCCEEEEEeCC
Q 001391 336 DGKQLKMIKEH-IGRGIWRCLYDSLSSLLVTAGFD 369 (1088)
Q Consensus 336 ~~~~~~~~~~h-~~~~V~~l~~~~dg~~l~tg~~D 369 (1088)
....-..+... ..+.-.+++.. ++.+++.||.+
T Consensus 220 ~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~ 253 (315)
T 4asc_A 220 TDNKWAPFEAFPQERSSLSLVSL-VGTLYAIGGFA 253 (315)
T ss_dssp TTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEE
T ss_pred CCCeEEECCCCCCcccceeEEEE-CCEEEEECCcc
Confidence 54444333221 11111122222 55677777764
No 299
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=95.08 E-value=2.7 Score=47.86 Aligned_cols=156 Identities=8% Similarity=-0.073 Sum_probs=84.1
Q ss_pred eEEEEEeccCCCCCCCCEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCC-
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK- 97 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~- 97 (1088)
-.+|+++ |+ +....|..+. .+.|+.+|..+++...... ......+++++ ++| .++++...+
T Consensus 141 P~gvavd--~~--s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~--~~~~P~giavd-------~dG----~lyVad~~~~ 203 (433)
T 4hw6_A 141 IWRMMFD--PN--SNYDDLYWVGQRDAFRHVDFVNQYVDIKTT--NIGQCADVNFT-------LNG----DMVVVDDQSS 203 (433)
T ss_dssp CCEEEEC--TT--TTTCEEEEECBTSCEEEEETTTTEEEEECC--CCSCEEEEEEC-------TTC----CEEEEECCSC
T ss_pred CceEEEc--cc--cCCCEEEEEeCCCCEEEEECCCCEEEEeec--CCCCccEEEEC-------CCC----CEEEEcCCCC
Confidence 4588888 71 0023444443 4899999998887654433 23358999999 777 444443211
Q ss_pred --EEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEE-EcCCcEEEEEcCCCceEEEe-
Q 001391 98 --RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSSIILEV- 173 (1088)
Q Consensus 98 --~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasg-s~Dg~V~iWd~~~~~~~~~~- 173 (1088)
.-.++.+.... .+. ....+. .-.....++++| +...|..+ ..++.|+.+|..++.....+
T Consensus 204 ~~~~gv~~~~~~~----~~~-----~~~~~~----~~~~P~giavd~---~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~ 267 (433)
T 4hw6_A 204 DTNTGIYLFTRAS----GFT-----ERLSLC----NARGAKTCAVHP---QNGKIYYTRYHHAMISSYDPATGTLTEEEV 267 (433)
T ss_dssp TTSEEEEEECGGG----TTC-----CEEEEE----ECSSBCCCEECT---TTCCEEECBTTCSEEEEECTTTCCEEEEEE
T ss_pred cccceEEEEECCC----Cee-----cccccc----ccCCCCEEEEeC---CCCeEEEEECCCCEEEEEECCCCeEEEEEe
Confidence 11222222111 000 001111 123346688887 54445544 45678999998877663222
Q ss_pred ccCCceeEEEEeeecCCCCCc-EEEEEecCCeEEEEEec
Q 001391 174 HSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~-~l~sg~~dg~I~vwd~~ 211 (1088)
........+.+++ ++++. +.++-...+.|..+++.
T Consensus 268 ~~~~~~~~~~ia~---dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 268 MMDTKGSNFHIVW---HPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp ECSCCSSCEEEEE---CTTSSEEEEEETTTTEEEEEEBC
T ss_pred ccCCCCCcccEEE---eCCCCEEEEEeCCCCEEEEEeCC
Confidence 2111122233554 57787 44555567889988875
No 300
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=94.71 E-value=2.8 Score=44.91 Aligned_cols=106 Identities=10% Similarity=-0.016 Sum_probs=54.5
Q ss_pred CEEEEEe-C--CeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEEC-C----CEEEEEEeccC
Q 001391 36 PFLLAGS-G--SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-E----KRVKLFELNFE 107 (1088)
Q Consensus 36 ~~laag~-d--~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~g-d----~~v~iw~l~~~ 107 (1088)
.+++.|. + ..+.+||..+.+-...-.......-++++.. ++ .+++.+| + ..+.+||+...
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--------~~----~lyv~GG~~~~~~~~~~~~d~~~~ 80 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--------DN----VVYILGGSQLFPIKRMDCYNVVKD 80 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--------TT----EEEEECCBSSSBCCEEEEEETTTT
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--------CC----EEEEEeCCCCCCcceEEEEeCCCC
Confidence 3555555 2 6899999988764321111111111233322 22 4555555 2 56777777643
Q ss_pred CCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcC------CcEEEEEcCCCceEE
Q 001391 108 LSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD------NSIRVWDISNSSIIL 171 (1088)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~D------g~V~iWd~~~~~~~~ 171 (1088)
. .+.+..+......-..+. - ++.+++.|+.+ ..+.+||..+.+...
T Consensus 81 ~-------------W~~~~~~p~~r~~~~~~~--~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 81 S-------------WYSKLGPPTPRDSLAACA--A---EGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp E-------------EEEEECCSSCCBSCEEEE--E---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred e-------------EEECCCCCccccceeEEE--E---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 2 333333332222212222 2 66777777765 468899998876543
No 301
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=94.41 E-value=7.9 Score=43.13 Aligned_cols=264 Identities=11% Similarity=0.088 Sum_probs=153.7
Q ss_pred CCCceEEecCCCce--eeeeE--EEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEeccccc
Q 001391 3 KKDLSEWRLDVGQY--LGEIS--ALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINC 78 (1088)
Q Consensus 3 d~~i~iWdl~~g~~--~~~V~--~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~ 78 (1088)
+..|.|-|+..+.. ..|+. +.-.+ |. .+.||.=.+.+|+|+|+++.+.+..+.-.+. |.--.|-
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~AdsAIMn--P~----~~iiALrag~~lQiFnle~K~klks~~~~e~--VvfWkWi---- 114 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPISADSAIMN--PA----SKVIALKAGKTLQIFNIEMKSKMKAHTMTDD--VTFWKWI---- 114 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECCCSEEEEC--SS----SSCEEEEETTEEEEEETTTTEEEEEEECSSC--CCEEEEE----
T ss_pred CCeEEEEECCCCCcceecccccceeeeC--CC----CcEEEEecCCeEEEEchHHhhhhcceecCCC--ceEEEec----
Confidence 34578888888662 22333 23345 66 6788877799999999999999988886453 5555564
Q ss_pred ccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCC----CCcEEEEEEecccCCCCEEEEEE
Q 001391 79 TEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRL----SHWVFDVCFLKVCNGNRSLAIGC 154 (1088)
Q Consensus 79 ~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h----~~~I~~v~f~p~~~d~~~lasgs 154 (1088)
.+ ..|+.-.+..|.-|+++... .+.+.+..| ...|..-..++ +.++++..|
T Consensus 115 ---s~-----~~l~lVT~taVyHWsi~~~s--------------~P~kvFdR~~~L~~~QIInY~~d~---~~kW~~l~G 169 (494)
T 1bpo_A 115 ---SL-----NTVALVTDNAVYHWSMEGES--------------QPVKMFDRHSSLAGCQIINYRTDA---KQKWLLLTG 169 (494)
T ss_dssp ---ET-----TEEEEECSSEEEEEESSSSC--------------CCEEEEECCGGGTTCEEEEEEECT---TSSEEEEEE
T ss_pred ---CC-----CeEEEEcCCeeEEecccCCC--------------CchhheecchhcccceEEEEEECC---CCCeEEEEe
Confidence 33 57888889999999997532 122222222 35677777777 777666544
Q ss_pred cCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCC
Q 001391 155 SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF 234 (1088)
Q Consensus 155 ~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~ 234 (1088)
-. . .++ . ..|.+.+|..+
T Consensus 170 I~--------------------------~-------~~~-~-----v~G~mQLYS~e----------------------- 187 (494)
T 1bpo_A 170 IS--------------------------A-------QQN-R-----VVGAMQLYSVD----------------------- 187 (494)
T ss_dssp EE--------------------------E-------ETT-E-----EEEEEEEEEST-----------------------
T ss_pred ec--------------------------c-------cCC-c-----ccceEEEeecc-----------------------
Confidence 10 0 001 1 11344555443
Q ss_pred ceeEecccccceeeeEEEeCCCCCEEEEEEcCCC---CEEEEEEC---CCcEEEEEcCCCc-ccCCCCceeeeceeeec-
Q 001391 235 KCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG---SKLVSVSD---DRSARIWEVRAEY-WKDSDSIEEVGSSVLYG- 306 (1088)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g---~~l~s~s~---Dg~v~iWd~~~~~-~~~~~~~~~i~~~~~~~- 306 (1088)
.+.-+.+.||...-..+....+. ..++.+.. .+.+++-++.... ...+...+.+. ....
T Consensus 188 -----------r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vd--v~fpp 254 (494)
T 1bpo_A 188 -----------RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVD--VFFPP 254 (494)
T ss_dssp -----------TCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEE--CCCCT
T ss_pred -----------ccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeee--eeCCc
Confidence 12222333443322222221100 11222222 2577888875431 10011111111 1111
Q ss_pred --cCcceEEEEEC--CCEEEEEeCCCcEEEEcC-CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 001391 307 --HNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 307 --h~~~I~~v~~~--~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~ 379 (1088)
-..-..++..+ -+.++.-..-|.+.++|+ ++.++..-+-... +|...+......-++...+.|.|.--.++.
T Consensus 255 e~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~-~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 255 EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp TSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred ccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCC-ceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence 12334567776 467888899999999999 8888877665555 788877777666677778999888777754
No 302
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=94.39 E-value=9.3 Score=43.85 Aligned_cols=239 Identities=11% Similarity=0.121 Sum_probs=124.4
Q ss_pred eEEEEEC-CCEEEEEEeccCCCCCCCCCCccccccceeeec-cCCCCcEEEEEE-------ecccCCCCEEEEEEcCC--
Q 001391 89 FEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSL-PRLSHWVFDVCF-------LKVCNGNRSLAIGCSDN-- 157 (1088)
Q Consensus 89 ~~la~~g-d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~I~~v~f-------~p~~~d~~~lasgs~Dg-- 157 (1088)
.++++.. .+.|++.|++... ...+... .........++| ++ +++.|+++...+
T Consensus 153 ~Lyv~~~~~~~i~~ID~~~~~-------------v~~l~~~~~~~~~~p~~ia~~~~~~~~d~---~G~~lyvad~~~~~ 216 (496)
T 3kya_A 153 HLYICYDGHKAIQLIDLKNRM-------------LSSPLNINTIPTNRIRSIAFNKKIEGYAD---EAEYMIVAIDYDGK 216 (496)
T ss_dssp EEEEEEETEEEEEEEETTTTE-------------EEEEECCTTSSCSBEEEEEECCCBTTTBC---TTCEEEEEECCCTT
T ss_pred EEEEEECCCCeEEEEECCCCE-------------EEEEEccCccccCCCcEEEEeecccccCC---CCCEEEEEeCCCCC
Confidence 4555544 4667777776422 1211111 112346899999 99 888666665443
Q ss_pred -----cEEEEEcCC-Cce--------EEEeccCCceeEEEEeeecCCC-CCcEEEEEecCCeEEEEEec-------cCcc
Q 001391 158 -----SIRVWDISN-SSI--------ILEVHSPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVD-------WEHV 215 (1088)
Q Consensus 158 -----~V~iWd~~~-~~~--------~~~~~~~~~~~~~s~~~~~~s~-~~~~l~sg~~dg~I~vwd~~-------~~~~ 215 (1088)
.|.+.+... +.. +..+..+ ..+++ .+ ++.++++-...+.|..+|+. +...
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p-----~giav---dp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~ 288 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAYKQC-----NGATI---HPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGS 288 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEESCC-----CCEEE---CTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCC
T ss_pred cccCceEEEEecCCCCceeecccceeeccCCCc-----eEEEE---cCCCCeEEEEECCCCEEEEEecccccccccCcee
Confidence 255665333 121 2222211 12333 34 45666666677889999886 2221
Q ss_pred -ccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCE-EEEEECCCcEEEEEcCCCcccCC
Q 001391 216 -APLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK-LVSVSDDRSARIWEVRAEYWKDS 293 (1088)
Q Consensus 216 -~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~-l~s~s~Dg~v~iWd~~~~~~~~~ 293 (1088)
.+... + .......+.. .+.....+.|+|+|+|++ +++-+....|+.++......
T Consensus 289 ~tp~~~-------------------~-~~g~~~~l~~-~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~--- 344 (496)
T 3kya_A 289 WDPIVK-------------------N-NPNTFKQLFT-IADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK--- 344 (496)
T ss_dssp CCCBGG-------------------G-CTTTEEEEEE-CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT---
T ss_pred eccccc-------------------c-cccccceeEe-cCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc---
Confidence 00000 0 0000112222 233456789999999995 45556677888866543210
Q ss_pred CCceeeeceeeec------c---------CcceE-EEEEC---------CCEEEEEeCCCcEEEEcCCCceeEEEccc--
Q 001391 294 DSIEEVGSSVLYG------H---------NARVW-DCCLT---------DSFIITAGEDCTCRVWGSDGKQLKMIKEH-- 346 (1088)
Q Consensus 294 ~~~~~i~~~~~~~------h---------~~~I~-~v~~~---------~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h-- 346 (1088)
....+..+.+ . -.... .++.. +.++++=..++.||.++.+|. +.++.+.
T Consensus 345 ---~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~-v~TiaG~g~ 420 (496)
T 3kya_A 345 ---EFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGI-VSTYAGRGA 420 (496)
T ss_dssp ---EECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTCB-EEEEEESCT
T ss_pred ---eecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCCC-EEEEecccc
Confidence 0000001111 0 01123 33332 345556567788999997774 4444321
Q ss_pred ------------C-C--------CCeEEEEEcCC-CCEEEEEeCCCCEEEEEcCC
Q 001391 347 ------------I-G--------RGIWRCLYDSL-SSLLVTAGFDSAIKVHQFQA 379 (1088)
Q Consensus 347 ------------~-~--------~~V~~l~~~~d-g~~l~tg~~Dg~I~iwd~~~ 379 (1088)
. + ..-..|+++++ +.+.++=.....|+.+++++
T Consensus 421 ~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~ 475 (496)
T 3kya_A 421 STSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQ 475 (496)
T ss_dssp THHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred cccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCC
Confidence 0 0 13578999986 66666666678899988854
No 303
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=94.33 E-value=1.1 Score=48.23 Aligned_cols=113 Identities=11% Similarity=0.038 Sum_probs=77.9
Q ss_pred CEEEEEE---cCCCCEEEEEE-------------CCCcEEEEEcC---CCcccCCCCceeeeceeeecc-----------
Q 001391 258 SIFRIEW---SSCGSKLVSVS-------------DDRSARIWEVR---AEYWKDSDSIEEVGSSVLYGH----------- 307 (1088)
Q Consensus 258 ~V~~v~~---sp~g~~l~s~s-------------~Dg~v~iWd~~---~~~~~~~~~~~~i~~~~~~~h----------- 307 (1088)
.+.+|.| .|+++++++.. .++.|..+|+. +++. ...+ .+...
T Consensus 64 ~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~-----~~~~---dL~~~~~~~~~~~g~~ 135 (334)
T 2p9w_A 64 QMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKP-----VWSV---NFEKVQDEFEKKAGKR 135 (334)
T ss_dssp EEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCC-----SEEE---ESHHHHHHHHHHHSSC
T ss_pred eeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCE-----EEEe---cCcccccccccccccc
Confidence 3578999 68877766533 26789999998 5432 1111 22111
Q ss_pred CcceEEEEEC--CCEEEEEeCC-CcEEEEcCCCceeEEEc-----ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 308 NARVWDCCLT--DSFIITAGED-CTCRVWGSDGKQLKMIK-----EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 308 ~~~I~~v~~~--~~~l~sg~~D-g~i~vWd~~~~~~~~~~-----~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
.....+++.. ++..++++.- +.|...+.+|+.+..+. .....+.+.|+++|+|++|++....|.+..+|+.
T Consensus 136 ~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 136 PFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp CEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred ccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 1246788887 7888888888 88888888877555432 1112246799999999988888779999999986
No 304
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.33 E-value=2.7 Score=45.35 Aligned_cols=94 Identities=12% Similarity=0.161 Sum_probs=45.6
Q ss_pred CCCEEEEEEC------CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCC-----cEEEEcC
Q 001391 267 CGSKLVSVSD------DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDC-----TCRVWGS 335 (1088)
Q Consensus 267 ~g~~l~s~s~------Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg-----~i~vWd~ 335 (1088)
+++.++.|+. -..+.+||+.+.+. +.+. .+........++.+.+.+++.|+.++ .+.+||.
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W------~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 229 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDW------KDLA--PMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDL 229 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEE------EEEC--CCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEET
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEE------EECC--CCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEEC
Confidence 5566666653 23588899888654 2221 11111111233445577777777543 4667887
Q ss_pred CCceeEEEcccC-CCCeEEEEEcCCCCEEEEEeCC
Q 001391 336 DGKQLKMIKEHI-GRGIWRCLYDSLSSLLVTAGFD 369 (1088)
Q Consensus 336 ~~~~~~~~~~h~-~~~V~~l~~~~dg~~l~tg~~D 369 (1088)
....-..+.... .+.-.+++. -++.+++.||.+
T Consensus 230 ~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~ 263 (318)
T 2woz_A 230 KTNKWEVMTEFPQERSSISLVS-LAGSLYAIGGFA 263 (318)
T ss_dssp TTCCEEECCCCSSCCBSCEEEE-ETTEEEEECCBC
T ss_pred CCCeEEECCCCCCcccceEEEE-ECCEEEEECCee
Confidence 443333332111 111112222 245677777754
No 305
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=94.29 E-value=0.06 Score=65.85 Aligned_cols=239 Identities=9% Similarity=-0.052 Sum_probs=117.6
Q ss_pred CEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCC
Q 001391 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQY 114 (1088)
Q Consensus 36 ~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~ 114 (1088)
.+|+......|++.++.+.+....+.... .+.+++|. +.++ .++.+ ...+.|+.+++..... ..
T Consensus 378 ~~ll~~~~~~I~~id~~~~~~~~~~~~~~--~p~gla~d-------~~~~---~Ly~sD~~~~~I~~~~~~g~~~-~~-- 442 (699)
T 1n7d_A 378 AYLFFTNRHEVRKMTLDRSEYTSLIPNLR--NVVALDTE-------VASN---RIYWSDLSQRMICSTQLDRAHG-VS-- 442 (699)
T ss_dssp CCBCCCCTTC-CEECTTSCCEECCSCCCT--TCCCCEEE-------TTTT---EEEECCTTTTSBEEEESCCCCC--C--
T ss_pred eeEEecCccceEEEeCCCCcceeeeccCc--ceEEEccc-------cccC---eEEEEecCCCeEEEEecCCCCC-Cc--
Confidence 34555555788888988766554444332 57899998 4431 33333 2367888888764110 00
Q ss_pred CCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCc
Q 001391 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEAL 194 (1088)
Q Consensus 115 ~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~ 194 (1088)
.....+...-.....|++.+ ..+.+.++-...+.|.+.++........+.... .....+++ ++.+.
T Consensus 443 --------~~~~~i~~~~~~P~glavD~--~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~-~~P~giav---Dp~~g 508 (699)
T 1n7d_A 443 --------SYDTVISRDIQAPDGLAVDW--IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQG-SKPRAIVV---DPVHG 508 (699)
T ss_dssp --------CCCCBCCSCC--CCCEECCC--SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSS-CCCCCEEC---CSSSS
T ss_pred --------ceEEEEeCCCCCcceEEEEe--eCCcEEEEeccCCeEEEEecCCCceEEEEeCCC-CCcceEEE---ccCCC
Confidence 00111111112345678775 033444444456789999887554333222111 11112222 23222
Q ss_pred EEEEEe-c-CCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE-eCCCCCEEEEEEcCCCCE-
Q 001391 195 RIASGT-I-YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCGSK- 270 (1088)
Q Consensus 195 ~l~sg~-~-dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~v~~sp~g~~- 270 (1088)
.|+... . .+.|.++++. +.....+ ...-....+|+|+|+++.
T Consensus 509 ~ly~td~~~~~~I~~~~~d----------------------------------G~~~~~l~~~~l~~PnGlavd~~~~~L 554 (699)
T 1n7d_A 509 FMYWTDWGTPAKIKKGGLN----------------------------------GVDIYSLVTENIQWPNGITLDLLSGRL 554 (699)
T ss_dssp CCEECCCSSSCCEEBCCSS----------------------------------SCCCCEESCSSCSSCCCEEECTTTCCE
T ss_pred cEEEcccCCCCeEEEEeCC----------------------------------CCCeeEEEeCCCCCccEEEEeccCCEE
Confidence 222222 1 2455555443 1111111 122345678999987654
Q ss_pred EEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CCceeEEEcc
Q 001391 271 LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKE 345 (1088)
Q Consensus 271 l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~~~~~~~~~ 345 (1088)
+++-+..+.|..+++..... +.+. ...+.......+++. +.++++....+.|..++. +|+.+..+..
T Consensus 555 Y~aD~~~~~I~~~d~dG~~~------~~~~--~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 555 YWVDSKLHSISSIDVNGGNR------KTIL--EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp EEEETTTTEEEEECSSSSCC------EEEC--CCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred EEEecCCCeEEEEccCCCce------EEEE--ecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 45555667899998865321 2221 111111222344444 455556666788888887 6766665543
No 306
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=93.93 E-value=4.8 Score=42.84 Aligned_cols=64 Identities=11% Similarity=0.261 Sum_probs=34.6
Q ss_pred CCCEEEEEECC-----CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCC-----cEEEEcCC
Q 001391 267 CGSKLVSVSDD-----RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDC-----TCRVWGSD 336 (1088)
Q Consensus 267 ~g~~l~s~s~D-----g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg-----~i~vWd~~ 336 (1088)
+++.++.|+.+ ..+.+||+.+.+. ..+. .+.........+.+.+.+++.|+.++ .+.+||..
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W------~~~~--~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 275 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAW------RQVA--DMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPT 275 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEE------EEEC--CCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCE------eeCC--CCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCC
Confidence 55666666654 4688999887654 2221 11111112223444567777777654 36777764
Q ss_pred Cc
Q 001391 337 GK 338 (1088)
Q Consensus 337 ~~ 338 (1088)
..
T Consensus 276 ~~ 277 (302)
T 2xn4_A 276 TD 277 (302)
T ss_dssp TT
T ss_pred CC
Confidence 33
No 307
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=93.88 E-value=10 Score=42.34 Aligned_cols=215 Identities=11% Similarity=0.170 Sum_probs=131.8
Q ss_pred CCceEEecCCCceee------eeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCC-CeeEEEEeeeC---CcceEEEEe
Q 001391 4 KDLSEWRLDVGQYLG------EISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEA-GTLIRPFQVFH---GIRLHGISC 73 (1088)
Q Consensus 4 ~~i~iWdl~~g~~~~------~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~t-g~~~~~~~~~~---~~~V~~i~~ 73 (1088)
.+++|+|+.+..... +|.-=.|- . .+.|+--++..|+-|++.. ..++..|.-|. +..|..-..
T Consensus 86 ~~lQiFnle~K~klks~~~~e~VvfWkWi--s-----~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~ 158 (494)
T 1bpo_A 86 KTLQIFNIEMKSKMKAHTMTDDVTFWKWI--S-----LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRT 158 (494)
T ss_dssp TEEEEEETTTTEEEEEEECSSCCCEEEEE--E-----TTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEE
T ss_pred CeEEEEchHHhhhhcceecCCCceEEEec--C-----CCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEE
Confidence 568999999987332 23322333 2 3578888889999999974 35566665433 334555555
Q ss_pred cccccccCCCccceeeEEEEEC--------CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccC
Q 001391 74 NFINCTEGSVSTRVTFEVALFG--------EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (1088)
Q Consensus 74 s~~~~~~~~d~~~~~~~la~~g--------d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~ 145 (1088)
+ ++.+ .++..| .|.+.+|..+. +.-+.+.||......+.+.-...
T Consensus 159 d-------~~~k----W~~l~GI~~~~~~v~G~mQLYS~er----------------~~sQ~ieGhaa~F~~~~~~g~~~ 211 (494)
T 1bpo_A 159 D-------AKQK----WLLLTGISAQQNRVVGAMQLYSVDR----------------KVSQPIEGHAASFAQFKMEGNAE 211 (494)
T ss_dssp C-------TTSS----EEEEEEEEEETTEEEEEEEEEESTT----------------CCEEEECCSEEEEEEEECTTCSS
T ss_pred C-------CCCC----eEEEEeecccCCcccceEEEeeccc----------------cccchheeeeeeeEEEecCCCCC
Confidence 5 6653 333322 36788898873 34566778877665555532101
Q ss_pred CCCEEEEEEcC---CcEEEEEcCCC--------ceEEEec-cCC--ceeEEEEeeecCCCCCcEEEEEecCCeEEEEEec
Q 001391 146 GNRSLAIGCSD---NSIRVWDISNS--------SIILEVH-SPE--RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 146 d~~~lasgs~D---g~V~iWd~~~~--------~~~~~~~-~~~--~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
...+++-+... +.++|-++... +....+. .++ ...-.++.. ++.-..++.-+..|.|.++|++
T Consensus 212 ~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqv---s~kygviyviTK~G~i~lyDle 288 (494)
T 1bpo_A 212 ESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI---SEKHDVVFLITKYGYIHLYDLE 288 (494)
T ss_dssp EEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEE---ETTTTEEEEEETTSEEEEEETT
T ss_pred CceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEe---cccCCEEEEEecCceEEEEecc
Confidence 11234444332 68888888543 1111221 222 111222322 3445577888899999999999
Q ss_pred cCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001391 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE 288 (1088)
Q Consensus 212 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~ 288 (1088)
++..+..-+-....|+.-+......-++.....|.|.--.++..
T Consensus 289 ---------------------------------Tgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 289 ---------------------------------TGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp ---------------------------------TCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred ---------------------------------cceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 77777777767788888777777667777778888877776664
No 308
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=93.87 E-value=16 Score=44.74 Aligned_cols=183 Identities=9% Similarity=-0.057 Sum_probs=104.3
Q ss_pred cCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCC
Q 001391 155 SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF 234 (1088)
Q Consensus 155 ~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~ 234 (1088)
....|+..++........+.... ....+++. ..++.++.+-...+.|+.+++.....
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~~~--~~~gl~~d--~~~~~lY~sD~~~~~I~~~~l~g~~~------------------- 458 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPNLR--NVVALDTE--VASNRIYWSDLSQRMICSTQLDRAHG------------------- 458 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECSCS--SEEEEEEE--TTTTEEEEEETTTTEEEEEEC------------------------
T ss_pred cccceeEeeccCCcceeeecCCC--ceEEEeec--ccCCeeEEeeccceeEEEEeccCCCC-------------------
Confidence 34568887876655433333222 23344442 12344555555567788777761000
Q ss_pred ceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEE-EEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEE
Q 001391 235 KCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL-VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD 313 (1088)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l-~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~ 313 (1088)
.......+........+|++.+.++.| ++-...+.|.+.++..... .. ...........
T Consensus 459 ----------~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~------~~----l~~~~l~~P~g 518 (791)
T 3m0c_C 459 ----------VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------KT----LFRENGSKPRA 518 (791)
T ss_dssp -------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE------EE----EEECTTCCEEE
T ss_pred ----------CcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE------EE----EEeCCCCCcce
Confidence 011222233344567789999877554 5556678899999876422 11 22223345778
Q ss_pred EEEC--CCEEEEEe-C-CCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEe-CCCCEEEEEcCCC
Q 001391 314 CCLT--DSFIITAG-E-DCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG-FDSAIKVHQFQAF 380 (1088)
Q Consensus 314 v~~~--~~~l~sg~-~-Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~-~Dg~I~iwd~~~~ 380 (1088)
+++. ...|+... . .+.|.+.+++|.....+..........|++++.+..|+.+. ..+.|...++.+.
T Consensus 519 IaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~ 590 (791)
T 3m0c_C 519 IVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 590 (791)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence 8886 34454443 3 37888888888766665443323578999998777666654 4567888887653
No 309
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=93.84 E-value=4.9 Score=43.15 Aligned_cols=53 Identities=13% Similarity=0.222 Sum_probs=28.6
Q ss_pred CCCEEEEEECCC-----cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCC
Q 001391 267 CGSKLVSVSDDR-----SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGED 327 (1088)
Q Consensus 267 ~g~~l~s~s~Dg-----~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~D 327 (1088)
+++.++.|+.++ .+.+||+.+.+. ..+. .+.........+.+.+.+++.|+.+
T Consensus 196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W------~~~~--~~p~~r~~~~~~~~~~~l~v~GG~~ 253 (315)
T 4asc_A 196 DGRIIVAAGVTDTGLTSSAEVYSITDNKW------APFE--AFPQERSSLSLVSLVGTLYAIGGFA 253 (315)
T ss_dssp TTEEEEEEEECSSSEEEEEEEEETTTTEE------EEEC--CCSSCCBSCEEEEETTEEEEEEEEE
T ss_pred CCEEEEEeccCCCCccceEEEEECCCCeE------EECC--CCCCcccceeEEEECCEEEEECCcc
Confidence 556677776544 578888887644 2222 1111111223444556777777764
No 310
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=93.49 E-value=7.1 Score=41.43 Aligned_cols=62 Identities=18% Similarity=0.203 Sum_probs=33.7
Q ss_pred CCCEEEEEECC-----CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCC-----cEEEEcCC
Q 001391 267 CGSKLVSVSDD-----RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDC-----TCRVWGSD 336 (1088)
Q Consensus 267 ~g~~l~s~s~D-----g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg-----~i~vWd~~ 336 (1088)
+++.++.|+.+ ..+.+||+.+.+. ..+. .+.........+.+.+.+++.|+.++ .+.+||..
T Consensus 206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W------~~~~--~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 277 (301)
T 2vpj_A 206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSW------TTVT--SMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPI 277 (301)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEE------EEEC--CCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETT
T ss_pred CCEEEEEeCCCCCcccceEEEEeCCCCcE------EECC--CCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCC
Confidence 45666666653 4688999987654 2222 11111112233444566777777653 45667763
No 311
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=93.36 E-value=4.4 Score=43.44 Aligned_cols=62 Identities=18% Similarity=0.167 Sum_probs=32.7
Q ss_pred CCCEEEEEEcC-----CcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecC-----CeEEEEEec
Q 001391 146 GNRSLAIGCSD-----NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY-----NEIIVWKVD 211 (1088)
Q Consensus 146 d~~~lasgs~D-----g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d-----g~I~vwd~~ 211 (1088)
++.+++.|+.+ ..+.+||..+.+....-..+......++... ++.+++.|+.+ ..+.+||+.
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~ 192 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL----NRLLYAVGGFDGTNRLNSAECYYPE 192 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCCEEEEETT
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE----CCEEEEEeCCCCCCcCceEEEEeCC
Confidence 56677777643 4688899887654432222221111122221 45566666544 447777766
No 312
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=93.33 E-value=10 Score=40.76 Aligned_cols=154 Identities=8% Similarity=0.028 Sum_probs=89.5
Q ss_pred EEEEeccCCCCCCCCEEEEEe--CCeEEEEECCCCeeEEE-Eee-----eCCcceEEEEe---cccccccCCCccceeeE
Q 001391 22 ALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTLIRP-FQV-----FHGIRLHGISC---NFINCTEGSVSTRVTFE 90 (1088)
Q Consensus 22 ~v~fs~~pd~~~~~~~laag~--d~~I~vwd~~tg~~~~~-~~~-----~~~~~V~~i~~---s~~~~~~~~d~~~~~~~ 90 (1088)
+.+|. +. +..+..++ .++|..||...+..... +.. .....+.+|.+ . |++ ++
T Consensus 17 ~~~wd--~~----~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D-------~~g----rL 79 (334)
T 2p9w_A 17 DTIYD--RT----RQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHD-------NSK----RL 79 (334)
T ss_dssp CEEEE--TT----TTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSS-------SCC----EE
T ss_pred CccCc--CC----CCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccC-------CCC----cE
Confidence 56777 54 44555555 69999999986644333 211 01123678888 4 555 56
Q ss_pred EEEEC--------------CCEEEEEEec---cCCCCCCCCCCccccccceeeeccCC-----------CCcEEEEEEec
Q 001391 91 VALFG--------------EKRVKLFELN---FELSPNSQYQPETCVNLSLVQSLPRL-----------SHWVFDVCFLK 142 (1088)
Q Consensus 91 la~~g--------------d~~v~iw~l~---~~~~~~~~~~~~~~~~~~~~~~l~~h-----------~~~I~~v~f~p 142 (1088)
+++.. ++.|..+|+. +.. ......|... .....++++.+
T Consensus 80 ~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~-------------~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~ 146 (334)
T 2p9w_A 80 FAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSK-------------PVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR 146 (334)
T ss_dssp EEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCC-------------CSEEEESHHHHHHHHHHHSSCCEEEEEEEECT
T ss_pred EEEEcccccccccccccCCCCEEEEEcCCcCCCCC-------------EEEEecCccccccccccccccccCCceeEECC
Confidence 66433 5778899987 332 1111222111 13488999999
Q ss_pred ccCCCCEEEEEEcC-CcEEEEEcCCCceEEE-eccC---CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEec
Q 001391 143 VCNGNRSLAIGCSD-NSIRVWDISNSSIILE-VHSP---ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 143 ~~~d~~~lasgs~D-g~V~iWd~~~~~~~~~-~~~~---~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
+|+.-++++.- +.|...+........- +..+ ...-...+.+ .|++..|++....|.|..+|+.
T Consensus 147 ---~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~---~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 147 ---DGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITF---DPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp ---TSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEE---ETTTTEEEEESSSSSEEEEECS
T ss_pred ---CCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEE---eCCCCEEEEEcCCCeEEEEcCC
Confidence 99988888877 7766666654322211 1111 1111223333 3677777666559999999987
No 313
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=92.99 E-value=11 Score=40.27 Aligned_cols=62 Identities=10% Similarity=0.129 Sum_probs=32.9
Q ss_pred CCCEEEEEEcC-------CcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEec------CCeEEEEEec
Q 001391 146 GNRSLAIGCSD-------NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI------YNEIIVWKVD 211 (1088)
Q Consensus 146 d~~~lasgs~D-------g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~------dg~I~vwd~~ 211 (1088)
++.+++.|+.+ ..+.+||..+.+....-..+......++.. .++.+++.|+. ...+.+||+.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~----~~~~iyv~GG~~~~~~~~~~~~~yd~~ 183 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS----HNGMIYCLGGKTDDKKCTNRVFIYNPK 183 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE----ETTEEEEECCEESSSCBCCCEEEEETT
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE----ECCEEEEEcCCCCCCCccceEEEEcCC
Confidence 56777777754 347888888765543322222111112222 24555555553 2347777776
No 314
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=92.95 E-value=13 Score=40.76 Aligned_cols=72 Identities=11% Similarity=-0.010 Sum_probs=45.2
Q ss_pred ceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeec---cCCCCcEEEEEEecc
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL---PRLSHWVFDVCFLKV 143 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l---~~h~~~I~~v~f~p~ 143 (1088)
.-.+|+|. |+| .++++-.++.|.+++ . .. .+.+..+ ..-......|+|+|
T Consensus 32 ~P~~ia~~-------pdG----~l~V~e~~g~I~~i~-~-g~-------------~~~~~~~~v~~~g~~~p~gia~~p- 84 (352)
T 2ism_A 32 VPWALAFL-------PDG----GMLIAERPGRIRLFR-E-GR-------------LSTYAELSVYHRGESGLLGLALHP- 84 (352)
T ss_dssp CEEEEEEC-------TTS----CEEEEETTTEEEEEE-T-TE-------------EEEEEECCCCCSTTCSEEEEEECT-
T ss_pred CceEEEEc-------CCC----eEEEEeCCCeEEEEE-C-CC-------------ccEeecceEeecCCCCceeEEECC-
Confidence 36789998 887 677776678888887 2 11 1222211 12235689999999
Q ss_pred cCC---CCEEEEEEc-C-----CcEEEEEcCCC
Q 001391 144 CNG---NRSLAIGCS-D-----NSIRVWDISNS 167 (1088)
Q Consensus 144 ~~d---~~~lasgs~-D-----g~V~iWd~~~~ 167 (1088)
+ +..|+++.. . +.|..++...+
T Consensus 85 --df~~~g~lYv~~~~~~~~~~~~v~r~~~~~~ 115 (352)
T 2ism_A 85 --RFPQEPYVYAYRTVAEGGLRNQVVRLRHLGE 115 (352)
T ss_dssp --TTTTSCEEEEEEEECTTSSEEEEEEEEECSS
T ss_pred --CCCCCCEEEEEEecCCCCCccEEEEEEeCCC
Confidence 7 555555433 2 56888887643
No 315
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=92.78 E-value=2.8 Score=44.94 Aligned_cols=103 Identities=12% Similarity=0.160 Sum_probs=52.6
Q ss_pred CCCEEEEEECC-----CcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCC-----CcEEEEcCC
Q 001391 267 CGSKLVSVSDD-----RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGED-----CTCRVWGSD 336 (1088)
Q Consensus 267 ~g~~l~s~s~D-----g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~D-----g~i~vWd~~ 336 (1088)
+++.++.|+.+ ..+..||+.+.+. ..+. .+.........+.+.+.+++.|+.+ ..+.+||+.
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W------~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~ 239 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEW------RMIT--AMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVE 239 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEE------EECC--CCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeE------eeCC--CCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCC
Confidence 45566666543 4588899887644 2221 1111111223344456777777765 458889985
Q ss_pred CceeEEEcccC-CCCeEEEEEcCCCCEEEEEeCCC-----CEEEEEcC
Q 001391 337 GKQLKMIKEHI-GRGIWRCLYDSLSSLLVTAGFDS-----AIKVHQFQ 378 (1088)
Q Consensus 337 ~~~~~~~~~h~-~~~V~~l~~~~dg~~l~tg~~Dg-----~I~iwd~~ 378 (1088)
...-..+.... .+.-.+++.. ++++++.||.++ .+.+||+.
T Consensus 240 ~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~ 286 (308)
T 1zgk_A 240 TETWTFVAPMKHRRSALGITVH-QGRIYVLGGYDGHTFLDSVECYDPD 286 (308)
T ss_dssp TTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETT
T ss_pred CCcEEECCCCCCCccceEEEEE-CCEEEEEcCcCCCcccceEEEEcCC
Confidence 44433332211 1111122222 566777777553 35566654
No 316
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=92.60 E-value=21 Score=42.47 Aligned_cols=232 Identities=12% Similarity=-0.025 Sum_probs=129.2
Q ss_pred CEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE-ECCCEEEEEEeccCCCCCCCC
Q 001391 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQY 114 (1088)
Q Consensus 36 ~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~gd~~v~iw~l~~~~~~~~~~ 114 (1088)
.+|+.+....|+..|+.+......+....-..+.+++|. +..+ .+..+ ..++.|..++++...
T Consensus 7 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d-------~~~~---~lywtD~~~~~I~r~~~~g~~------ 70 (628)
T 4a0p_A 7 AFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFD-------VTDN---RIYWTDISLKTISRAFMNGSA------ 70 (628)
T ss_dssp CEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEE-------TTTT---EEEEEETTTTEEEEEETTSCS------
T ss_pred cEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEE-------CCCC---EEEEEECCCCeEEEEECCCCC------
Confidence 577777889999999987654333332222358899998 4331 44444 347888888876321
Q ss_pred CCccccccceeeeccCCCCcEEEEEEecccCCCCEE-EEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCC-C
Q 001391 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL-AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL-E 192 (1088)
Q Consensus 115 ~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~l-asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~-~ 192 (1088)
.+.+ +..-......+++.+ .+..| ++-...+.|.+.++........+... ......+++ +| +
T Consensus 71 -------~~~v--~~~g~~~P~GlAvD~---~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~-l~~P~~iav---dp~~ 134 (628)
T 4a0p_A 71 -------LEHV--VEFGLDYPEGMAVDW---LGKNLYWADTGTNRIEVSKLDGQHRQVLVWKD-LDSPRALAL---DPAE 134 (628)
T ss_dssp -------CEEE--ECSSCSCCCEEEEET---TTTEEEEEETTTTEEEEEETTSTTCEEEECSS-CCCEEEEEE---ETTT
T ss_pred -------cEEE--EeCCCCCcceEEEEe---CCCEEEEEECCCCEEEEEecCCCcEEEEEeCC-CCCcccEEE---ccCC
Confidence 1111 111124567899987 55544 44455678999998654332222111 111234444 23 3
Q ss_pred CcEEEEE-ecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEE
Q 001391 193 ALRIASG-TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (1088)
Q Consensus 193 ~~~l~sg-~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l 271 (1088)
+.+..+- +..+.|...++. +.....+...-....+|+++++++.|
T Consensus 135 G~lY~tD~g~~~~I~r~~~d----------------------------------G~~~~~l~~~~~~P~GlalD~~~~~L 180 (628)
T 4a0p_A 135 GFMYWTEWGGKPKIDRAAMD----------------------------------GSERTTLVPNVGRANGLTIDYAKRRL 180 (628)
T ss_dssp TEEEEEECSSSCEEEEEETT----------------------------------SCSCEEEECSCSSEEEEEEETTTTEE
T ss_pred CeEEEeCCCCCCEEEEEeCC----------------------------------CCceEEEECCCCCcceEEEccccCEE
Confidence 4333332 224555555554 11122222345678999999987766
Q ss_pred EEE-ECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECC-CEEEEEeCCCcEEEEcC-CCceeEEEc
Q 001391 272 VSV-SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-SFIITAGEDCTCRVWGS-DGKQLKMIK 344 (1088)
Q Consensus 272 ~s~-s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~-~~l~sg~~Dg~i~vWd~-~~~~~~~~~ 344 (1088)
..+ ...+.|...++..... +. +.........+++.+ .++++-...+.|...|. +|+....+.
T Consensus 181 Y~aD~~~~~I~~~d~dG~~~------~v-----~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~~~l~ 245 (628)
T 4a0p_A 181 YWTDLDTNLIESSNMLGLNR------EV-----IADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQ 245 (628)
T ss_dssp EEEETTTTEEEEEETTSCSC------EE-----EEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEECCCCEEEEEcCCCCce------EE-----eeccCCCceEEEEECCEEEEecCCCCEEEEEECCCCCceEEEe
Confidence 554 4567888888866321 21 222223345677664 44455556788888886 665544443
No 317
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=91.63 E-value=8.5 Score=42.05 Aligned_cols=42 Identities=24% Similarity=0.269 Sum_probs=21.4
Q ss_pred cEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEECCCEEEEEeCCC
Q 001391 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDC 328 (1088)
Q Consensus 279 ~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~~~~l~sg~~Dg 328 (1088)
.+.+||+.+.+. +.+. .+......-.++.+.+.+++.|+.++
T Consensus 286 ~~~~yd~~~~~W------~~~~--~~p~~r~~~~~~~~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 286 STDIHLWHNGKW------DKSG--ELSQGRAYGVSLPWNNSLLIIGGETA 327 (357)
T ss_dssp CCEEEECC---C------EEEE--ECSSCCBSSEEEEETTEEEEEEEECG
T ss_pred eEEEEecCCCce------eeCC--CCCCCcccceeEEeCCEEEEEeeeCC
Confidence 477889887654 2232 22211122234455678888888654
No 318
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=91.10 E-value=20 Score=39.10 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=21.3
Q ss_pred CcEEEEEEecccCCCCEEEEEEcCCcEEEEE
Q 001391 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWD 163 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd 163 (1088)
..-+.++|.| +|++++ +..++.|++++
T Consensus 31 ~~P~~ia~~p---dG~l~V-~e~~g~I~~i~ 57 (352)
T 2ism_A 31 EVPWALAFLP---DGGMLI-AERPGRIRLFR 57 (352)
T ss_dssp SCEEEEEECT---TSCEEE-EETTTEEEEEE
T ss_pred CCceEEEEcC---CCeEEE-EeCCCeEEEEE
Confidence 3568999999 998554 55679999998
No 319
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=90.88 E-value=12 Score=48.25 Aligned_cols=115 Identities=13% Similarity=0.112 Sum_probs=72.8
Q ss_pred CCCceEEecCCCce--eeeeEE--EEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEeccccc
Q 001391 3 KKDLSEWRLDVGQY--LGEISA--LCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINC 78 (1088)
Q Consensus 3 d~~i~iWdl~~g~~--~~~V~~--v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~ 78 (1088)
...|.|-|+..+.. ..||.| .-.+ |. .+.||.-.+.+|+|+|+++.+.+..+.-.+ .|.--.|-
T Consensus 47 ~~~vvIidl~~~~~~~rrpi~AdsAIMn--P~----~~iiALrag~~lQiFnl~~k~klks~~~~e--~VvfWkWi---- 114 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPISADSAIMN--PA----SKVIALKAGKTLQIFNIEMKSKMKAHTMTD--DVTFWKWI---- 114 (1630)
T ss_pred CceEEEEECCCCCCcccccccchhhccC--CC----cceEEEecCCeEEEeehHHhhhhcccccCC--CceEEEec----
Confidence 34577777777552 223332 2234 65 677777778999999999988888877544 35555564
Q ss_pred ccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCC----CCcEEEEEEecccCCCCEEEEEE
Q 001391 79 TEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRL----SHWVFDVCFLKVCNGNRSLAIGC 154 (1088)
Q Consensus 79 ~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h----~~~I~~v~f~p~~~d~~~lasgs 154 (1088)
.+ ..|+.-.+..|.-|++.... .+.+.+..| ...|..-..++ +.++++..|
T Consensus 115 ---s~-----~~l~lVT~~aVyHW~~~~~s--------------~P~k~fdR~~~L~~~QIinY~~d~---~~kW~~l~g 169 (1630)
T 1xi4_A 115 ---SL-----NTVALVTDNAVYHWSMEGES--------------QPVKMFDRHSSLAGCQIINYRTDA---KQKWLLLTG 169 (1630)
T ss_pred ---CC-----CeeEEEcCCeEEEeccCCCC--------------ccHHHHhcchhcccCeeEEeeeCC---CCCeEEEEe
Confidence 44 67888888999999997422 122222222 34566666666 777665543
No 320
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=90.79 E-value=27 Score=39.99 Aligned_cols=161 Identities=12% Similarity=0.139 Sum_probs=88.5
Q ss_pred eEEEEEeccC-CCCCCCCEEEEEeC-CeEEEEECCCCeeEEEEeeeC--CcceEEEEe-------cccccccCCCcccee
Q 001391 20 ISALCFVHLP-SHLSSLPFLLAGSG-SQVLLYDLEAGTLIRPFQVFH--GIRLHGISC-------NFINCTEGSVSTRVT 88 (1088)
Q Consensus 20 V~~v~fs~~p-d~~~~~~~laag~d-~~I~vwd~~tg~~~~~~~~~~--~~~V~~i~~-------s~~~~~~~~d~~~~~ 88 (1088)
-..|+|+ | + .+.+.++-.+ ..|++.|.+++.+........ -.+..+|+| + +++.
T Consensus 141 p~~la~d--p~~---~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d-------~~G~--- 205 (496)
T 3kya_A 141 NGRLAFD--PLN---KDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYA-------DEAE--- 205 (496)
T ss_dssp EEEEEEE--TTE---EEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTB-------CTTC---
T ss_pred CCEEEEc--cCC---CCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccC-------CCCC---
Confidence 5689999 8 3 1334444333 789999998877655444322 235889999 7 6762
Q ss_pred eEEEEEC-C-C---E--EEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCC-EEEEEEcCCcEE
Q 001391 89 FEVALFG-E-K---R--VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIR 160 (1088)
Q Consensus 89 ~~la~~g-d-~---~--v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~-~lasgs~Dg~V~ 160 (1088)
.++++.. + + . |.+++..... .+... .....+..+ .....++++| ++. ++++-..++.|.
T Consensus 206 ~lyvad~~~~~~~~~~~V~~i~r~~~G----~~~~~--~~~~~v~~~----~~p~giavdp---~~g~LYvtd~~~g~V~ 272 (496)
T 3kya_A 206 YMIVAIDYDGKGDESPSVYIIKRNADG----TFDDR--SDIQLIAAY----KQCNGATIHP---INGELYFNSYEKGQVF 272 (496)
T ss_dssp EEEEEECCCTTGGGEEEEEEEECCTTS----CCSTT--SCEEEEEEE----SCCCCEEECT---TTCCEEEEETTTTEEE
T ss_pred EEEEEeCCCCCcccCceEEEEecCCCC----ceeec--ccceeeccC----CCceEEEEcC---CCCeEEEEECCCCEEE
Confidence 3444433 3 1 3 4444422211 11100 000122222 2345778888 555 455556778899
Q ss_pred EEEcC-------CCce-----------EEE-eccCCceeEEEEeeecCCCCCcE-EEEEecCCeEEEEEec
Q 001391 161 VWDIS-------NSSI-----------ILE-VHSPERCLLYSMKLWGDNLEALR-IASGTIYNEIIVWKVD 211 (1088)
Q Consensus 161 iWd~~-------~~~~-----------~~~-~~~~~~~~~~s~~~~~~s~~~~~-l~sg~~dg~I~vwd~~ 211 (1088)
.+|+. ++.. ... +..+.....+.+++ ++++.. .++-+..+.|+.++..
T Consensus 273 r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~---~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 273 RLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFI---HPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp EECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEE---CTTSSEEEEEETTTTEEEEEEEE
T ss_pred EEecccccccccCceeecccccccccccceeEecCCCCCceEEEE---cCCCCEEEEEeCCCCEEEEEecC
Confidence 99997 5543 112 22222233455665 678874 4555667888887765
No 321
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=90.49 E-value=8.7 Score=42.77 Aligned_cols=106 Identities=10% Similarity=0.102 Sum_probs=72.3
Q ss_pred eEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccC--CCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCC
Q 001391 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR--LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (1088)
Q Consensus 89 ~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~--h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~ 166 (1088)
..+.+..++.||.-++.... . .+.+. ++. --+.|..+..+| +|++||..+ +..|.|-.+..
T Consensus 33 t~i~~a~~n~iR~~~i~~~~----~--------Yk~L~-~~~~i~f~~i~qlvlSp---sG~lLAl~g-~~~V~Vv~LP~ 95 (452)
T 3pbp_A 33 TRIVFIQDNIIRWYNVLTDS----L--------YHSLN-FSRHLVLDDTFHVISST---SGDLLCLFN-DNEIFVMEVPW 95 (452)
T ss_dssp TEEEEEETTEEEEEETTTCS----S--------CEEEE-CTTTCCCCTTCEEEECT---TSSEEEEEC-SSEEEEEECCT
T ss_pred CEEEEEECCEEEEEECCCCC----c--------ceEEe-cCcccccCceeEEEECC---CCCEEEEec-CCeEEEEEecC
Confidence 45555666888888877422 1 22222 221 123578899999 999999886 56899988873
Q ss_pred Cc------------eEEEeccC-----CceeEEEEeeecCCCCCcEEEEEecCCeEEEEEec
Q 001391 167 SS------------IILEVHSP-----ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 167 ~~------------~~~~~~~~-----~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
+. ..+.+.-. ....+..+.||+.+..+..|++-+.|+.|++||+.
T Consensus 96 ~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~ 157 (452)
T 3pbp_A 96 GYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDIL 157 (452)
T ss_dssp TCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETT
T ss_pred ccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcc
Confidence 32 11222211 13457788899888889999999999999999998
No 322
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=90.30 E-value=0.68 Score=56.48 Aligned_cols=194 Identities=8% Similarity=-0.106 Sum_probs=101.5
Q ss_pred CcEEEEEEecccCCCCEEEEE-EcCCcEEEEEcCC----CceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEE
Q 001391 133 HWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISN----SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIV 207 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasg-s~Dg~V~iWd~~~----~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~v 207 (1088)
..+..++|.+ .+..|+.. ...+.|+.+++.. ......+.... .....+++. ...+.++++-...+.|.+
T Consensus 406 ~~p~gla~d~---~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~-~~P~glavD--~~~g~LY~tD~~~~~I~v 479 (699)
T 1n7d_A 406 RNVVALDTEV---ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI-QAPDGLAVD--WIHSNIYWTDSVLGTVSV 479 (699)
T ss_dssp TTCCCCEEET---TTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC---CCCEECC--CSSSBCEECCTTTSCEEE
T ss_pred cceEEEcccc---ccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCC-CCcceEEEE--eeCCcEEEEeccCCeEEE
Confidence 4567899988 66666655 3467899999875 11111111000 001122221 123444444445677777
Q ss_pred EEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEE-eCCCCCEEEEEEcCCCCEEEEEE-CC-CcEEEEE
Q 001391 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCGSKLVSVS-DD-RSARIWE 284 (1088)
Q Consensus 208 wd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~v~~sp~g~~l~s~s-~D-g~v~iWd 284 (1088)
.++. .. .+..+ .........|+++|.+.+|+.+. .. +.|...+
T Consensus 480 ~d~d---------------------------------g~-~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~ 525 (699)
T 1n7d_A 480 ADTK---------------------------------GV-KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 525 (699)
T ss_dssp EBSS---------------------------------SC-CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCC
T ss_pred EecC---------------------------------CC-ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEe
Confidence 7765 11 11222 22234467888998765554433 22 5676666
Q ss_pred cCCCcccCCCCceeeeceeeeccCcceEEEEEC---CCEEEEEeCCCcEEEEcCCCceeEEEcccC--CCCeEEEEEcCC
Q 001391 285 VRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSDGKQLKMIKEHI--GRGIWRCLYDSL 359 (1088)
Q Consensus 285 ~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~---~~~l~sg~~Dg~i~vWd~~~~~~~~~~~h~--~~~V~~l~~~~d 359 (1088)
+..... +.+ ....-.....++++ +.++++-...+.|.+++++|.....+.... ......|++..+
T Consensus 526 ~dG~~~------~~l----~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~ 595 (699)
T 1n7d_A 526 LNGVDI------YSL----VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED 595 (699)
T ss_dssp SSSCCC------CEE----SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT
T ss_pred CCCCCe------eEE----EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC
Confidence 654211 111 11112334568886 345556667788999999765555543211 112345666554
Q ss_pred CCEEEEEeCCCCEEEEEc
Q 001391 360 SSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 360 g~~l~tg~~Dg~I~iwd~ 377 (1088)
.++++....+.|..++.
T Consensus 596 -~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 596 -KVFWTDIINEAIFSANR 612 (699)
T ss_dssp -EEEEECSTTTCEEEEET
T ss_pred -EEEEEeCCCCeEEEEEc
Confidence 45555556678888876
No 323
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=88.52 E-value=46 Score=39.45 Aligned_cols=225 Identities=8% Similarity=-0.117 Sum_probs=118.4
Q ss_pred eEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEE-cCCcEEEEEcCCC
Q 001391 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISNS 167 (1088)
Q Consensus 89 ~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs-~Dg~V~iWd~~~~ 167 (1088)
.++.-...+.|+..++.... .+ ...+...-.....++|++ .+..|+.+. ..+.|..+++...
T Consensus 10 ~~~~~~~~~~I~~i~~~~~~-------------~~-~~~~~~~~~~~~~ld~~~---~~~~ly~sD~~~~~I~r~~~~g~ 72 (619)
T 3s94_A 10 PLLLYANRRDLRLVDATNGK-------------EN-ATIVVGGLEDAAAVDFVF---SHGLIYWSDVSEEAIKRTEFNKT 72 (619)
T ss_dssp CCEEEECSSBEEEECCC-----------------------CBCCSCEEEEEEET---TTTEEEEEETTTTEEEEEEC---
T ss_pred ceEEEeccccEEEEeCCCCc-------------ce-EEEEEcCCCceEEEEEEe---CCCEEEEEECCCCeEEEEEccCC
Confidence 35555667888888887421 01 111112234578999998 666666554 4678888888755
Q ss_pred ce-EEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccce
Q 001391 168 SI-ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (1088)
Q Consensus 168 ~~-~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 246 (1088)
.. ...+.... .....+++-+ ..+.+..+-...+.|.+.++. ..
T Consensus 73 ~~~~~v~~~~~-~~P~GlAvD~--~~~~ly~~d~~~~~I~v~~~d---------------------------------G~ 116 (619)
T 3s94_A 73 ESVQNVVVSGL-LSPDGLACDW--LGEKLYWTDSETNRIEVSNLD---------------------------------GS 116 (619)
T ss_dssp --CEEEECSSC-SCEEEEEEET--TTTEEEEEETTTTEEEEEETT---------------------------------SC
T ss_pred CceEEEEeCCC-CCcCeEEEEe--cCCEEEEEeCCCCEEEEEECC---------------------------------CC
Confidence 32 22222221 1233444411 234555566667888888876 11
Q ss_pred eeeEEEeCCCCCEEEEEEcCCCCEEEEEEC--CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEE
Q 001391 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSD--DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFII 322 (1088)
Q Consensus 247 ~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~--Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~ 322 (1088)
.....+...-....+|++.|.+.+|..+.. .+.|...++..... +. .....-.....+++. +..|+
T Consensus 117 ~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~------~~----l~~~~~~~P~Glald~~~~~LY 186 (619)
T 3s94_A 117 LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR------FI----IINSEIYWPNGLTLDYEEQKLY 186 (619)
T ss_dssp SCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC------EE----EECSSCSSEEEEEEETTTTEEE
T ss_pred CEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce------EE----EEeCCCCCCcEEEEEccCCEEE
Confidence 111122234456788999997666655443 34565556554221 11 111223456778886 34444
Q ss_pred -EEeCCCcEEEEcCCCceeEEEcc-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 323 -TAGEDCTCRVWGSDGKQLKMIKE-HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 323 -sg~~Dg~i~vWd~~~~~~~~~~~-h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
+=...+.|...+++|.....+.. ... ...++++..+ .+.++-...+.|...|..
T Consensus 187 ~aD~~~~~I~~~~~dG~~~~~~~~~~~~-~P~gi~~~~~-~ly~td~~~~~V~~~d~~ 242 (619)
T 3s94_A 187 WADAKLNFIHKSNLDGTNRQAVVKGSLP-HPFALTLFED-ILYWTDWSTHSILACNKY 242 (619)
T ss_dssp EEETTTCCEEEESSSCCEEC----------CCCEEESSS-EEEEECTTTCSEEEEESS
T ss_pred EEeCCCCeEEEecCCCCccEEEEeCCCC-CceEEEEeCC-EEEEecCCCCEEEEEECC
Confidence 44566789999997755444322 112 2346777665 444554567788888873
No 324
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=88.10 E-value=34 Score=37.35 Aligned_cols=31 Identities=13% Similarity=0.163 Sum_probs=23.0
Q ss_pred CcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc
Q 001391 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~ 168 (1088)
...+.++|.| +++++ ++..++.|++++. +++
T Consensus 29 ~~P~~ia~~p---dG~l~-V~e~~g~I~~~d~-~G~ 59 (354)
T 3a9g_A 29 EVPWSIAPLG---GGRYL-VTERPGRLVLISP-SGK 59 (354)
T ss_dssp SCEEEEEEEE---TTEEE-EEETTTEEEEECS-SCE
T ss_pred CCCeEEEEcC---CCeEE-EEeCCCEEEEEeC-CCc
Confidence 4578999999 98855 4566799999873 444
No 325
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=86.68 E-value=7.8 Score=39.02 Aligned_cols=163 Identities=9% Similarity=-0.065 Sum_probs=77.4
Q ss_pred ceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEee--eecCC-cceEEEecCCCCCCCcCCCCCeEEEecCCCCEE
Q 001391 421 YVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKIL--QVSEG-MPIICMDLLSNEPKYPCGIDDWVALGDGKGNMT 497 (1088)
Q Consensus 421 ~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~--~~~~~-~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~ 497 (1088)
.++.++|.|++.+++. .+|.++..+........|.... -+..+ ....++-+.+ ++.+.++ .||.|+
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~--------~G~LYav--~dG~iy 110 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP--------NGYLYAV--SKDKLY 110 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT--------TSCEEEE--ETTEEE
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC--------CCCEEEe--CCCEEE
Confidence 4779999999999998 8999998765554444442210 00000 0012333333 3466666 558776
Q ss_pred EEEEcCCCcCcceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeecc
Q 001391 498 IVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSS 577 (1088)
Q Consensus 498 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~ 577 (1088)
-++-.+.....-..-........=... ....+.|+|.+.+.. |+.++-+..+......-. ........
T Consensus 111 r~~pP~~~~~~Wl~~a~~vg~~gw~~~--~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl--------~~~~~~g~ 178 (236)
T 1tl2_A 111 KASPPQSDTDNWIARATEVGSGGWSGF--KFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWL--------ARATKIGQ 178 (236)
T ss_dssp EESCCCSTTCCHHHHSEEEECSSGGGE--EEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHH--------HHCEEEES
T ss_pred EeCCCcCCCCceeccccEeccCCCCce--EEEEECCCceEEEEe--CCcEEecCCCCCCCcccc--------cccceecc
Confidence 554322211110000000000000011 234578898887776 777554333311110000 01111111
Q ss_pred ccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCC
Q 001391 578 CFGARIMCLDASFEDEVLFCGDLRGNLVLFPLL 610 (1088)
Q Consensus 578 ~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~ 610 (1088)
..-..-.-+.|++++.+.++- +| ++|...
T Consensus 179 ~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~ 207 (236)
T 1tl2_A 179 GGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDY 207 (236)
T ss_dssp SSGGGEEEEEECTTSCEEEEE--TT--EEEEES
T ss_pred CCcceEEEEEECCCCcEEEEe--CC--eEEecC
Confidence 122233446688999888776 66 455543
No 326
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=85.69 E-value=15 Score=40.08 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=17.2
Q ss_pred CCCEEEEEEc-C---------CcEEEEEcCCCceE
Q 001391 146 GNRSLAIGCS-D---------NSIRVWDISNSSII 170 (1088)
Q Consensus 146 d~~~lasgs~-D---------g~V~iWd~~~~~~~ 170 (1088)
++.+++.||. + +.+.+||..+.+..
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~ 99 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWV 99 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEE
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEE
Confidence 5667777765 2 46889998876544
No 327
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=84.89 E-value=45 Score=35.63 Aligned_cols=219 Identities=11% Similarity=0.063 Sum_probs=111.6
Q ss_pred cCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEE
Q 001391 357 DSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA 436 (1088)
Q Consensus 357 ~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~ 436 (1088)
-++..++++.+.+|.|+--.+..-..+...+. ....+ .+...+..+..+..+....+++.
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~----------g~~~~----------~lke~D~l~~~~~~~~~~~ll~~ 64 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGK----------GLSSF----------DLNDGDEIVIALCVNTHDYLFMI 64 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCC----------CEECC----------CCCTTCCEEEEEEEETTCEEEEE
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCC----------Cceec----------ccCCCCEEEEEEEECCCCEEEEE
Confidence 35667889999999999877632110000000 00000 01111222333334445689999
Q ss_pred ecCCeEEEEEeccCCcceeEE-------eeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCc-
Q 001391 437 TNHGYLYHTKLCDMDSVNWNK-------ILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP- 508 (1088)
Q Consensus 437 t~~g~i~~~~~~~~~~~~~~~-------~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~- 508 (1088)
|+.|.++.++..+.....|.. .+....+..+..+..... ......++..+..|.++...+..-....
T Consensus 65 T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~-----~~~~~~ll~~T~~G~~kr~~l~~~~~~r~ 139 (312)
T 1suu_A 65 SNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKD-----LTDDAYLLLTTASGKIARFESTDFKAVKS 139 (312)
T ss_dssp ETTSEEEEEEGGGSCC-------CBGGGTSCCCTTCCEEEEEEESC-----CCTTCEEEEEETTSEEEEEEGGGGCC---
T ss_pred ECCCeEEEEEHHHCCCCCccCCCcChhhccCCCCCCEEEEEEEecc-----CCCCCEEEEEeCCCeEEEEEHHHhhccCC
Confidence 999999998877654433221 122223444555433221 0134678888999999887765422111
Q ss_pred ceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEe
Q 001391 509 QLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDA 588 (1088)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~ 588 (1088)
...... .......+..+..+ . ++..++..+.+|....+.+..-...... . .-...+...-...|.++..
T Consensus 140 ~G~~~i--~L~~~d~lv~~~~~-~-~~~~i~l~T~~G~~~r~~~~ev~~~gR~-----~--~Gv~~i~L~~~d~vv~~~~ 208 (312)
T 1suu_A 140 RGVIVI--KLNDKDFVTSAEIV-F-KDEKVICLSKKGSAFIFNSRDVRLTNRG-----T--QGVCGMKLKEGDLFVKVLS 208 (312)
T ss_dssp -CEECB--CCCTTCCEEEEEEE-C-TTCEEEEEETTSEEEEEEGGGSCBCCTT-----B--CCEECCCCCTTCCEEEEEE
T ss_pred CcEEEE--ecCCCCEEEEEEEe-C-CCCEEEEEeCCCcEEEEEHHHccccCCC-----C--CCeEeEEeCCCCEEEEEEE
Confidence 111111 11223345554332 3 3445666778898888887642211100 0 0001111122455666665
Q ss_pred eeCCCEEEEEcCCCcEEEEeCCc
Q 001391 589 SFEDEVLFCGDLRGNLVLFPLLR 611 (1088)
Q Consensus 589 spdg~~LatGs~dg~I~Iw~~~~ 611 (1088)
..++..|++.+..|..+.++++.
T Consensus 209 v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 209 VKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CTTCSEEEEEETTSEEEEEEGGG
T ss_pred ECCCCeEEEEECCCceEEEEHHH
Confidence 55667788999999999998875
No 328
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=83.97 E-value=53 Score=35.72 Aligned_cols=30 Identities=20% Similarity=0.472 Sum_probs=22.4
Q ss_pred CcEEEEEEecccCCCCEEEEEEcCCcEEEEEcC
Q 001391 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS 165 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~ 165 (1088)
...+.|+|.| +++.|+++...|.|++++..
T Consensus 18 ~~P~~i~~~p---dG~~l~V~e~~G~i~~~~~~ 47 (353)
T 2g8s_A 18 DHPWALAFLP---DNHGMLITLRGGELRHWQAG 47 (353)
T ss_dssp SSEEEEEECS---TTCCEEEEETTTEEEEEETT
T ss_pred CCcEEEEEcC---CCCEEEEEeCCceEEEEeCC
Confidence 3568999999 99834455568999999853
No 329
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=82.52 E-value=26 Score=35.30 Aligned_cols=155 Identities=8% Similarity=-0.017 Sum_probs=79.2
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeee---ccCcceEEEEEC-CCEEEEEeCCCcEEE
Q 001391 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY---GHNARVWDCCLT-DSFIITAGEDCTCRV 332 (1088)
Q Consensus 257 ~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~---~h~~~I~~v~~~-~~~l~sg~~Dg~i~v 332 (1088)
..+..++|+|+|.+.+. .++.+.-.+..+... ...+...+.. +... ..++.|. +..|... .||.|+-
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~-----~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav-~dG~iyr 111 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDN-----DNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV-SKDKLYK 111 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTT-----CCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE-ETTEEEE
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCc-----ccccccccEeccccccc-ceEEEECCCCCEEEe-CCCEEEE
Confidence 36779999999986666 566554444333211 1111100111 1111 3567777 3344444 6799988
Q ss_pred EcC--CCce-----eEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeee
Q 001391 333 WGS--DGKQ-----LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKI 405 (1088)
Q Consensus 333 Wd~--~~~~-----~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1088)
++. ++.. -..+....-+.+..|.+.|+|.+-+.. |+.+.-+......- . .+..
T Consensus 112 ~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~------~---~wl~--------- 171 (236)
T 1tl2_A 112 ASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQ------D---NWLA--------- 171 (236)
T ss_dssp ESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTT------C---CHHH---------
T ss_pred eCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCC------c---cccc---------
Confidence 886 2221 112211111258899999999866655 77643322211100 0 0000
Q ss_pred CCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEE
Q 001391 406 PNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHT 445 (1088)
Q Consensus 406 ~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~ 445 (1088)
.....-...-...+.+.|.+++.+++.. +|.++..
T Consensus 172 ----~~~~~g~~g~~~yr~l~f~~~G~l~~v~-~g~~Y~~ 206 (236)
T 1tl2_A 172 ----RATKIGQGGWDTFKFLFFSSVGTLFGVQ-GGKFYED 206 (236)
T ss_dssp ----HCEEEESSSGGGEEEEEECTTSCEEEEE-TTEEEEE
T ss_pred ----ccceeccCCcceEEEEEECCCCcEEEEe-CCeEEec
Confidence 0000001112245667899999888888 8888753
No 330
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=79.26 E-value=76 Score=34.47 Aligned_cols=109 Identities=8% Similarity=-0.087 Sum_probs=61.9
Q ss_pred eeEEEeCCC-CCEEEEEEcCCCCEEEEEEC---C------------CcEEEEEcCCCcccCCCCceeeeceeeeccCcce
Q 001391 248 NLFRLVGHE-GSIFRIEWSSCGSKLVSVSD---D------------RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311 (1088)
Q Consensus 248 ~~~~~~gh~-~~V~~v~~sp~g~~l~s~s~---D------------g~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I 311 (1088)
.+..+.+.. ...+.+.+.++|.+.++... | ..=++|.+..++. + .+...-...
T Consensus 155 ~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~------~-----~~~~~l~~p 223 (355)
T 3sre_A 155 HLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV------R-----VVAEGFDFA 223 (355)
T ss_dssp EEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCC------E-----EEEEEESSE
T ss_pred EEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeE------E-----EeecCCccc
Confidence 344444332 45789999999998887641 1 1223444333211 1 122222346
Q ss_pred EEEEEC--CCEEEE-EeCCCcEEEEcCC--Ccee--EEEcccCCCCeEEEEEcC-CCCEEEEEeCC
Q 001391 312 WDCCLT--DSFIIT-AGEDCTCRVWGSD--GKQL--KMIKEHIGRGIWRCLYDS-LSSLLVTAGFD 369 (1088)
Q Consensus 312 ~~v~~~--~~~l~s-g~~Dg~i~vWd~~--~~~~--~~~~~h~~~~V~~l~~~~-dg~~l~tg~~D 369 (1088)
..++|+ +..++. -+..+.|..|+++ ++.. +.+. ..+ ....+++.+ +|++.+++..+
T Consensus 224 NGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g-~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 224 NGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDT-LVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSS-EEEEEEECTTTCCEEEEEESC
T ss_pred CcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCC-CCceEEEeCCCCcEEEEecCC
Confidence 789998 345544 4567889999983 4321 2332 223 467888988 58877766544
No 331
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=77.68 E-value=85 Score=34.11 Aligned_cols=179 Identities=15% Similarity=0.117 Sum_probs=98.3
Q ss_pred eCCeEEEEECCC--CeeE-EEEee--e--CCcceEEEEecccccccCCCccceeeEEEE-EC--CCEEEEEEeccCCCCC
Q 001391 42 SGSQVLLYDLEA--GTLI-RPFQV--F--HGIRLHGISCNFINCTEGSVSTRVTFEVAL-FG--EKRVKLFELNFELSPN 111 (1088)
Q Consensus 42 ~d~~I~vwd~~t--g~~~-~~~~~--~--~~~~V~~i~~s~~~~~~~~d~~~~~~~la~-~g--d~~v~iw~l~~~~~~~ 111 (1088)
.+|.|.++|..+ ++.. -.+.+ + .....|+|.+.++ .++. -.++++ .+ +.+|.+|+++...
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d-----~dg~--~~L~Vvnh~~~~s~ielf~~d~~~--- 150 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFID-----DDNT--VYLLVVNHPGSSSTVEVFKFQEEE--- 150 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEEC-----TTCC--EEEEEEECSTTCCEEEEEEEETTT---
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEEC-----CCCc--EEEEEEECCCCCCeEEEEEEECCC---
Confidence 368999999873 3321 12332 1 2246899998742 2331 134444 22 6789999998543
Q ss_pred CCCCCccccccceeeeccCCC-CcEEEEEEecccCCCCEEEEEEc---C------------CcEEEEEcCCCceEEEecc
Q 001391 112 SQYQPETCVNLSLVQSLPRLS-HWVFDVCFLKVCNGNRSLAIGCS---D------------NSIRVWDISNSSIILEVHS 175 (1088)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~h~-~~I~~v~f~p~~~d~~~lasgs~---D------------g~V~iWd~~~~~~~~~~~~ 175 (1088)
.....+..+.+.. ...+++++.+ +|...++... | ..=++|.+..++.......
T Consensus 151 --------~~~~~~~~~~g~~~~~pND~~v~~---~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~~ 219 (355)
T 3sre_A 151 --------KSLLHLKTIRHKLLPSVNDIVAVG---PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEG 219 (355)
T ss_dssp --------TEEEEEEEECCTTCSSEEEEEEEE---TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEEEE
T ss_pred --------CEEEEEeccccCCCCCCceEEEeC---CCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEeecC
Confidence 0244555665543 5689999999 9887776531 1 2233443333322211111
Q ss_pred CCceeEEEEeeecCCCCCcEEEE-EecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeEEEeC
Q 001391 176 PERCLLYSMKLWGDNLEALRIAS-GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1088)
Q Consensus 176 ~~~~~~~s~~~~~~s~~~~~l~s-g~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (1088)
-.....+++ +||+..++. -+..+.|..|++.... .......+ .
T Consensus 220 --l~~pNGia~---spDg~~lYvadt~~~~I~~~~~~~~g------------------------------~l~~~~~~-~ 263 (355)
T 3sre_A 220 --FDFANGINI---SPDGKYVYIAELLAHKIHVYEKHANW------------------------------TLTPLRVL-S 263 (355)
T ss_dssp --ESSEEEEEE---CTTSSEEEEEEGGGTEEEEEEECTTS------------------------------CEEEEEEE-E
T ss_pred --CcccCcceE---CCCCCEEEEEeCCCCeEEEEEECCCC------------------------------cEecCEEE-e
Confidence 111223444 688866655 4567899999986100 11111122 2
Q ss_pred CCCCEEEEEEcC-CCCEEEEEECC
Q 001391 255 HEGSIFRIEWSS-CGSKLVSVSDD 277 (1088)
Q Consensus 255 h~~~V~~v~~sp-~g~~l~s~s~D 277 (1088)
..+..-.+++.+ +|.+.+++..+
T Consensus 264 ~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 264 FDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp CSSEEEEEEECTTTCCEEEEEESC
T ss_pred CCCCCceEEEeCCCCcEEEEecCC
Confidence 246678899999 58888777644
No 332
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=76.56 E-value=38 Score=43.72 Aligned_cols=173 Identities=9% Similarity=0.151 Sum_probs=90.7
Q ss_pred CCceEEecCCCcee------eeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCC-eeEEEEeeeC---CcceEEEEe
Q 001391 4 KDLSEWRLDVGQYL------GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG-TLIRPFQVFH---GIRLHGISC 73 (1088)
Q Consensus 4 ~~i~iWdl~~g~~~------~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg-~~~~~~~~~~---~~~V~~i~~ 73 (1088)
.+++|+|+.+.... .+|.-=.|- . .+.|+--++..|.-|++... .++..|.-|. +..|..-..
T Consensus 86 ~~lQiFnl~~k~klks~~~~e~VvfWkWi--s-----~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~ 158 (1630)
T 1xi4_A 86 KTLQIFNIEMKSKMKAHTMTDDVTFWKWI--S-----LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRT 158 (1630)
T ss_pred CeEEEeehHHhhhhcccccCCCceEEEec--C-----CCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeee
Confidence 56899999887622 333333443 2 35777778889999999642 3433343321 234555555
Q ss_pred cccccccCCCccceeeEEEEEC--------CCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccC
Q 001391 74 NFINCTEGSVSTRVTFEVALFG--------EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (1088)
Q Consensus 74 s~~~~~~~~d~~~~~~~la~~g--------d~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~ 145 (1088)
+ ++. ..++..| .|.+.+|..+.. .-+.+.||......+.+.-...
T Consensus 159 d-------~~~----kW~~l~gi~~~~~~v~G~mQLyS~er~----------------~sQ~iegha~~F~~~~~~~~~~ 211 (1630)
T 1xi4_A 159 D-------AKQ----KWLLLTGISAQQNRVVGAMQLYSVDRK----------------VSQPIEGHAASFAQFKMEGNAE 211 (1630)
T ss_pred C-------CCC----CeEEEEeeccCCCcccceeeeeecccc----------------cchhhhHhHhhhheeccCCCCC
Confidence 5 555 3333322 378889988742 3344556665544444421111
Q ss_pred CCCEEEEEEc---CCcEEEEEcCCC---ce-----EE-EeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEec
Q 001391 146 GNRSLAIGCS---DNSIRVWDISNS---SI-----IL-EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1088)
Q Consensus 146 d~~~lasgs~---Dg~V~iWd~~~~---~~-----~~-~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~ 211 (1088)
...+++.+.. .+.++|-++... .. .. ....++...-+-++..- ++.-..+..-+..|.|.++|+.
T Consensus 212 ~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~v-s~k~g~iy~itk~G~~~~~d~~ 288 (1630)
T 1xi4_A 212 ESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI-SEKHDVVFLITKYGYIHLYDLE 288 (1630)
T ss_pred CceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEe-ccccCEEEEEecCceEEEEecc
Confidence 1122222221 267888887542 11 11 11122211111111111 3445567778899999999999
No 333
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=74.60 E-value=1e+02 Score=33.41 Aligned_cols=113 Identities=8% Similarity=0.039 Sum_probs=56.5
Q ss_pred eCCCCCEEEEEEcCCCCEEEEE-ECCCcEEEEEcCCCccc-------CCCCceeeeceeeeccC-cceEEEEEC-CCEEE
Q 001391 253 VGHEGSIFRIEWSSCGSKLVSV-SDDRSARIWEVRAEYWK-------DSDSIEEVGSSVLYGHN-ARVWDCCLT-DSFII 322 (1088)
Q Consensus 253 ~gh~~~V~~v~~sp~g~~l~s~-s~Dg~v~iWd~~~~~~~-------~~~~~~~i~~~~~~~h~-~~I~~v~~~-~~~l~ 322 (1088)
.||. ....++|+|+|.+.++- +.|+.=.|--+..+..- .........+.....+. .....++|. +.+++
T Consensus 199 ~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~g~~~~ 277 (347)
T 3das_A 199 YGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAEGSVWM 277 (347)
T ss_dssp BCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEETTEEEE
T ss_pred eCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEcCceee
Confidence 3554 35689999988766653 23332333333322110 00001111111233332 356677776 55555
Q ss_pred EEeCCCcEEEEcCC-Cc----eeEEEcccCCCCeEEEEEcCCCCEEEEEe
Q 001391 323 TAGEDCTCRVWGSD-GK----QLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367 (1088)
Q Consensus 323 sg~~Dg~i~vWd~~-~~----~~~~~~~h~~~~V~~l~~~~dg~~l~tg~ 367 (1088)
..-..+.|....++ +. ....+.+..+ .+..++..|||.++++..
T Consensus 278 ~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~g-R~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 278 AGLRGERLWRIPLKGTAAAADPQAFLEGEYG-RLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EESTTCSEEEEEEETTEESSCCEEESTTTSS-CEEEEEEEETTEEEEEEC
T ss_pred ccccCCEEEEEEecCCceecceEEeecCCCC-CccEEEECCCCcEEEEEc
Confidence 55555566555552 22 1223344345 488999999997655543
No 334
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=73.97 E-value=1.5e+02 Score=35.09 Aligned_cols=223 Identities=10% Similarity=-0.099 Sum_probs=126.5
Q ss_pred eEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEE-EEcCCcEEEEEcCCC
Q 001391 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI-GCSDNSIRVWDISNS 167 (1088)
Q Consensus 89 ~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~las-gs~Dg~V~iWd~~~~ 167 (1088)
..|+.+....|+..+++... ......+. .-..+..++|++ .+..|+. -..++.|+.+++...
T Consensus 7 ~~Ll~s~~~~I~~i~l~~~~-------------~~~~~~~~-~~~~~~~l~~d~---~~~~lywtD~~~~~I~r~~~~g~ 69 (628)
T 4a0p_A 7 AFLLFSRRADIRRISLETNN-------------NNVAIPLT-GVKEASALDFDV---TDNRIYWTDISLKTISRAFMNGS 69 (628)
T ss_dssp CEEEEEETTEEEEEESSCTT-------------CEEECCCC-SCSCEEEEEEET---TTTEEEEEETTTTEEEEEETTSC
T ss_pred cEEEEEeCCcEEEEECCCCC-------------cceEEEcC-CCCceEEEEEEC---CCCEEEEEECCCCeEEEEECCCC
Confidence 45555677899999997432 11111111 234688999998 6665554 456788999998765
Q ss_pred ceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEeccccccee
Q 001391 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1088)
Q Consensus 168 ~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 247 (1088)
.....+..... ....+++- ...+.+..+-...+.|.+.++. ...
T Consensus 70 ~~~~v~~~g~~-~P~GlAvD--~~~~~LY~tD~~~~~I~v~~~d---------------------------------G~~ 113 (628)
T 4a0p_A 70 ALEHVVEFGLD-YPEGMAVD--WLGKNLYWADTGTNRIEVSKLD---------------------------------GQH 113 (628)
T ss_dssp SCEEEECSSCS-CCCEEEEE--TTTTEEEEEETTTTEEEEEETT---------------------------------STT
T ss_pred CcEEEEeCCCC-CcceEEEE--eCCCEEEEEECCCCEEEEEecC---------------------------------CCc
Confidence 43333322111 11123331 1234455555556778887776 111
Q ss_pred eeEEEeCCCCCEEEEEEcCCCCEEEEEEC--CCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEE
Q 001391 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVSD--DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIIT 323 (1088)
Q Consensus 248 ~~~~~~gh~~~V~~v~~sp~g~~l~s~s~--Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~s 323 (1088)
....+...-....+|++.|...+|..+.. .+.|...++..... + .+...-.....++++ +..|+.
T Consensus 114 ~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~------~-----~l~~~~~~P~GlalD~~~~~LY~ 182 (628)
T 4a0p_A 114 RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER------T-----TLVPNVGRANGLTIDYAKRRLYW 182 (628)
T ss_dssp CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------E-----EEECSCSSEEEEEEETTTTEEEE
T ss_pred EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce------E-----EEECCCCCcceEEEccccCEEEE
Confidence 11112233456789999996666655542 45677677665321 1 222233456788887 455544
Q ss_pred E-eCCCcEEEEcCCCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEc
Q 001391 324 A-GEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1088)
Q Consensus 324 g-~~Dg~i~vWd~~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~ 377 (1088)
+ ...+.|...+++|.....+..... ...++++.. +.+.++-...+.|...|.
T Consensus 183 aD~~~~~I~~~d~dG~~~~v~~~~l~-~P~glav~~-~~ly~tD~~~~~I~~~dk 235 (628)
T 4a0p_A 183 TDLDTNLIESSNMLGLNREVIADDLP-HPFGLTQYQ-DYIYWTDWSRRSIERANK 235 (628)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECCS-CEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred EECCCCEEEEEcCCCCceEEeeccCC-CceEEEEEC-CEEEEecCCCCEEEEEEC
Confidence 4 556789999986654444443333 356888865 445555555788888885
No 335
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=72.83 E-value=1.1e+02 Score=33.29 Aligned_cols=219 Identities=13% Similarity=0.105 Sum_probs=111.6
Q ss_pred EcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEE-EeccCCeEE
Q 001391 356 YDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCL-HLTSEDTLY 434 (1088)
Q Consensus 356 ~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l-~~s~~~~ll 434 (1088)
+-|+..++++.+.+|.|+--.+..-..+...+. + ...+. +.. +..+..+ ..+....++
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~--------g--~~~~~----------lke-~D~l~~~~~~~t~d~ll 61 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGR--------G--RSAAS----------TKE-EDFIDQLWLVNTHDTLL 61 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCC--------C--SEEEE----------CSC-CCCEEEEEEECTTCEEE
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCC--------C--ceecc----------cCC-CCEEEEEEEecCCCEEE
Confidence 346778999999999999776532000000000 0 00000 111 1223333 333455789
Q ss_pred EEecCCeEEEEEeccCCcceeE----E---eeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcC
Q 001391 435 IATNHGYLYHTKLCDMDSVNWN----K---ILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHT 507 (1088)
Q Consensus 435 ~~t~~g~i~~~~~~~~~~~~~~----~---~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~ 507 (1088)
+.|+.|.++.++.++.....|. . ++....+..|.++-..... ..+..+++.+..|.++...+..-...
T Consensus 62 ~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~-----~~~~~ll~~T~~G~vKrt~l~e~~~~ 136 (370)
T 3l6v_A 62 TFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREY-----ADNRYVFMATRNGTVKKTPLSEFAFR 136 (370)
T ss_dssp EEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCC-----CTTCEEEEEETTSEEEEEEGGGGCSC
T ss_pred EEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCCCCCEEEEEEEeccC-----CCCcEEEEEeCCCeEEEeEHHHhhcc
Confidence 9999999999887765433221 1 1222334555555432221 23468999999999998877543221
Q ss_pred c-ceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEE
Q 001391 508 P-QLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCL 586 (1088)
Q Consensus 508 ~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l 586 (1088)
. ........ .....+..+..+ .+...++..+.+|.+..+....-....... .-.. .....-...|.++
T Consensus 137 ~~~G~~ai~L--~~~d~lv~v~~~--~~~~~i~l~T~~G~~irf~~~~v~~~gR~a----~GV~---~i~L~~~d~Vv~~ 205 (370)
T 3l6v_A 137 LARGKIAINL--DEGDALVGVALT--DGDRDVLLFASNGKTVRFGESTVRSMGRTA----TGVR---GIRLAKGEEVVSL 205 (370)
T ss_dssp CTTCEESSCC--CTTCCEEEEEEE--CSCCEEEEEETTSEEEEEEGGGSCBCCTTC----CCEE---CCCCCTTCCEEEE
T ss_pred cCCceEEEEe--CCCCEEEEEEEe--CCCceEEEEeCCCeEEEEEccccCccCCCC----CCee---eEEeCCCCEEEEE
Confidence 1 11111111 122334443322 333455556678888878765332111100 0000 1111223445555
Q ss_pred Eeee-----------------------------------CCCEEEEEcCCCcEEEEeCCc
Q 001391 587 DASF-----------------------------------EDEVLFCGDLRGNLVLFPLLR 611 (1088)
Q Consensus 587 ~~sp-----------------------------------dg~~LatGs~dg~I~Iw~~~~ 611 (1088)
...+ ++..|.+.+..|..+...+..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e 265 (370)
T 3l6v_A 206 IVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAE 265 (370)
T ss_dssp EEECCC-----------------------------------CEEEEEETTSEEEEEEGGG
T ss_pred EEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHH
Confidence 5443 456888999999999988774
No 336
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=72.27 E-value=97 Score=32.24 Aligned_cols=164 Identities=12% Similarity=0.037 Sum_probs=93.3
Q ss_pred ccCCeEEEEecCCeEEEEEeccCCcceeEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcC
Q 001391 428 TSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHT 507 (1088)
Q Consensus 428 s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~ 507 (1088)
+....+++.|+.|.++...+++.....|..+ ...+..|..+-. .. . ++..+++.+.+|.++-..+..-...
T Consensus 33 ~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~l--l~~~e~i~~v~~-~~-----~-~~~~~v~~T~~G~iKr~~l~~~~~~ 103 (276)
T 3no0_A 33 PFTEGLFLVSNRGRVYWIAGSQALQGSKVSL--KSREEKIVGAFI-RE-----K-FGNRLLLATKKGYVKKIPLAEFEYK 103 (276)
T ss_dssp ETTSCEEEEETTSEEEEECSHHHHTSEECCC--SSTTCCEEEEEE-GG-----G-SCSEEEEEETTSEEEEEEGGGTTTC
T ss_pred CCCCEEEEEcCCCeEEEEEhhhCccCccccc--CCCCCEEEEEEC-Cc-----C-CCCEEEEEeCCCEEEEEEHHHhhhh
Confidence 3455899999999999887765433333333 334555555432 21 1 3468999999999999887653211
Q ss_pred cceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEE
Q 001391 508 PQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLD 587 (1088)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~ 587 (1088)
......... .....+.....+ .+...++..+..|.++.+....-+...... . -.... ...-...|.++.
T Consensus 104 ~~G~~~i~l--kegD~l~~~~~~--~~~~~ill~T~~G~~~r~~~~eip~~gR~a--~--Gv~~i---~L~~~d~vv~~~ 172 (276)
T 3no0_A 104 AQGMPIIKL--TEGDEVVSIASS--VDETHILLFTKKGRVARFSVREVPPSTPGA--R--GVQGI---KLEKNDETSGLR 172 (276)
T ss_dssp STTEECSCC--CTTCCEEEEEEC--CSSCEEEEEETTSEEEEEEGGGSCBCCTTC--C--CEECC---CCCTTCCEEEEE
T ss_pred cCCeEEEec--CCCCEEEEEEEe--CCCCEEEEEECCCEEEEEEhhhCCCcCCCC--C--CEEEE---ccCCCCEEEEEE
Confidence 111111111 122234443322 244456666788988888766433211100 0 00111 112245677776
Q ss_pred eeeCCCEEEEEcCCCcEEEEeCCc
Q 001391 588 ASFEDEVLFCGDLRGNLVLFPLLR 611 (1088)
Q Consensus 588 ~spdg~~LatGs~dg~I~Iw~~~~ 611 (1088)
..+++..|++.++.|.++...++.
T Consensus 173 ~~~~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 173 IWNGEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp EESSCSEEEEEETTSCEEEEEGGG
T ss_pred EeCCCCEEEEEeCCCcEEEeEHHH
Confidence 667777899999999999998765
No 337
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=67.11 E-value=1.4e+02 Score=32.15 Aligned_cols=37 Identities=14% Similarity=0.059 Sum_probs=27.6
Q ss_pred CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCce
Q 001391 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1088)
Q Consensus 130 ~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~ 169 (1088)
..-..-+.|+|.| +|.++++--..|.|++++...++.
T Consensus 29 ~gL~~P~~ia~~p---dG~llVter~~G~I~~v~~~~g~~ 65 (347)
T 3das_A 29 TGLNSPWGLAPLP---GGDLLVSSRDEATITRVDAKTGRK 65 (347)
T ss_dssp CCCSSEEEEEECT---TSCEEEEETTTCEEEEECTTTCCE
T ss_pred cCCCCceEEEEcC---CCcEEEEEecCCEEEEEECCCCcE
Confidence 3345678999999 998776654489999998765554
No 338
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=65.05 E-value=1.5e+02 Score=31.67 Aligned_cols=169 Identities=13% Similarity=0.121 Sum_probs=95.3
Q ss_pred eccCCeEEEEecCCeEEEEEeccCCcceeE----E---eeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEE
Q 001391 427 LTSEDTLYIATNHGYLYHTKLCDMDSVNWN----K---ILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIV 499 (1088)
Q Consensus 427 ~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~----~---~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw 499 (1088)
-+....+++.|+.|.+|.++.++.....|. . ++....+..|..+-.... .+.+..+++.+.+|.++-.
T Consensus 50 ~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~-----~~~e~~~v~~T~~G~iKr~ 124 (327)
T 3uc1_A 50 CSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRG-----YTDAPYLVLATRNGLVKKS 124 (327)
T ss_dssp EETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESS-----TTSSSEEEEEETTSEEEEE
T ss_pred eCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEecc-----CCCCCEEEEEcCCCEEEEe
Confidence 344568899999999999887765544331 1 122233455555533322 1345789999999999988
Q ss_pred EEcCCCcCcc-eeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecC--CCCCcccccCCcccceeeeeeec
Q 001391 500 RVVGDVHTPQ-LSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLC--DPFSSVCYESSKTNNVFLVAEFS 576 (1088)
Q Consensus 500 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~l~~~~~ 576 (1088)
.+..-..... ....... .....+.....+ . ....|+..+..|.+..+... .-+....... -... ..
T Consensus 125 ~l~~~~~~~r~G~~~i~l--ke~D~lv~~~~~-~-~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~----Gv~~---i~ 193 (327)
T 3uc1_A 125 KLTDFDSNRSGGIVAVNL--RDNDELVGAVLC-S-AGDDLLLVSANGQSIRFSATDEALRPMGRATS----GVQG---MR 193 (327)
T ss_dssp EGGGGCCCCSSCEESCBC--CTTCCEEEEEEE-C-TTCEEEEEETTSEEEEEECCTTTSCCCCTTSB----CEES---SC
T ss_pred EHHHhhccccCceEEEEE--CCCCEEEEEEEe-c-CCCEEEEEECCCeEEEEECcccccCcCCcCCC----Ceee---ec
Confidence 7765322111 1111111 122334443332 2 33455556678888888776 3221111000 0011 11
Q ss_pred cccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCc
Q 001391 577 SCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (1088)
Q Consensus 577 ~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~ 611 (1088)
......|.++...+++..|++.++.|.++.-.++.
T Consensus 194 L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 194 FNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp CCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred CCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 12356677777767777899999999999887764
No 339
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=63.53 E-value=1.7e+02 Score=31.61 Aligned_cols=69 Identities=14% Similarity=0.039 Sum_probs=39.7
Q ss_pred ccCcceEEEEEC---------CCEEEEEeCCCcEEEEcC-CCceeEE--E-cccCCCCeEEEEEcCCCCEEEEEe-CCCC
Q 001391 306 GHNARVWDCCLT---------DSFIITAGEDCTCRVWGS-DGKQLKM--I-KEHIGRGIWRCLYDSLSSLLVTAG-FDSA 371 (1088)
Q Consensus 306 ~h~~~I~~v~~~---------~~~l~sg~~Dg~i~vWd~-~~~~~~~--~-~~h~~~~V~~l~~~~dg~~l~tg~-~Dg~ 371 (1088)
.+...+..+.|. +.+++..-..+.|...++ .++.... + ..... .+..+++.|||.+.++.. .+|
T Consensus 268 ~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-rp~~v~~~pdG~lyv~td~~~g- 345 (353)
T 2g8s_A 268 KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQ-RIRDVRTGPDGYLYVLTDESSG- 345 (353)
T ss_dssp SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCC-CEEEEEECTTSCEEEEECSTTE-
T ss_pred CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCC-ceeEEEECCCCcEEEEEeCCCC-
Confidence 333456677773 445666556677777776 3433322 2 22223 488999999998666433 334
Q ss_pred EEEEEc
Q 001391 372 IKVHQF 377 (1088)
Q Consensus 372 I~iwd~ 377 (1088)
+||.+
T Consensus 346 -~I~ri 350 (353)
T 2g8s_A 346 -ELLKV 350 (353)
T ss_dssp -EEEEE
T ss_pred -EEEEE
Confidence 44443
No 340
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=62.87 E-value=1.6e+02 Score=31.32 Aligned_cols=213 Identities=12% Similarity=0.162 Sum_probs=111.9
Q ss_pred CCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEe
Q 001391 358 SLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT 437 (1088)
Q Consensus 358 ~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t 437 (1088)
|+...+++.+.+|.|+--.+..-..+ ...... +...+..+..+.-+....+++.|
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~----~~~~~~---------------------lke~D~l~~~~~~~t~d~ll~fT 57 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAAS----NGQDFA---------------------MKDTDRLLAMLEMNTKDVLLLFT 57 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHT----TTCCCC---------------------CCTTCCEEEEEEEETTSEEEEEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhc----Cccccc---------------------cCCCCEEEEEEEECCCCEEEEEE
Confidence 56678899999999987765310000 000000 11112223333344466899999
Q ss_pred cCCeEEEEEeccCCcceeE-------EeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCc--
Q 001391 438 NHGYLYHTKLCDMDSVNWN-------KILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP-- 508 (1088)
Q Consensus 438 ~~g~i~~~~~~~~~~~~~~-------~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~-- 508 (1088)
+.|.++.+..++.....|. .++....+..|..+..... ...+..++..+..|.++-..+..-....
T Consensus 58 ~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~-----~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~ 132 (323)
T 1wp5_A 58 NKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPIND-----FELNGYFLFVTRNGMVKKTELKHYKAQRYS 132 (323)
T ss_dssp TTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESC-----TTSSCEEEEEETTSEEEEEEGGGGCCSCCS
T ss_pred CCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecc-----cCCCceEEEEeCCCeEEEeEHHHhhhcccc
Confidence 9999999887764433321 1122233445555433221 1124578889999999998775432211
Q ss_pred ceeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEEEEEe
Q 001391 509 QLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDA 588 (1088)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~ 588 (1088)
......... ....+..+..+ . +...++..+.+|.+..+....-...... ..-.. .....-...|.++..
T Consensus 133 ~G~~ai~l~--e~d~lv~~~~~-~-~~~~i~l~T~~G~~irf~~~ev~~~gR~----a~GV~---~i~L~~~d~Vv~~~~ 201 (323)
T 1wp5_A 133 KPLTGINLK--NDDQVVDVHLT-D-GMNELFLVTHNGYALWFDESEVSIVGVR----AAGVK---GMNLKEGDYIVSGQL 201 (323)
T ss_dssp SCEECSCCC--TTCCEEEEEEE-C-SCSEEEEEETTSEEEEEEGGGSCBCCSS----CCCEE---CCCCCTTCCEEEEEE
T ss_pred CceEEEEeC--CCCEEEEEEEe-C-CCCEEEEEeCCCcEEEEEHHHCcccCCC----CcCEE---EEEeCCCCEEEEEEE
Confidence 111111111 12334443322 2 3345556667888888887643211110 00001 111123455777765
Q ss_pred eeCCC-EEEEEcCCCcEEEEeCCc
Q 001391 589 SFEDE-VLFCGDLRGNLVLFPLLR 611 (1088)
Q Consensus 589 spdg~-~LatGs~dg~I~Iw~~~~ 611 (1088)
.+++. .|.+.+..|..+..+++.
T Consensus 202 ~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 202 ITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp ECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EcCCCcEEEEEECCCceEEEEHHH
Confidence 55555 788889999988887765
No 341
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=62.45 E-value=1.7e+02 Score=31.49 Aligned_cols=51 Identities=16% Similarity=0.222 Sum_probs=33.4
Q ss_pred eeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCe-eEEEEee--eCCcceEEEEeccc
Q 001391 19 EISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGT-LIRPFQV--FHGIRLHGISCNFI 76 (1088)
Q Consensus 19 ~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~-~~~~~~~--~~~~~V~~i~~s~~ 76 (1088)
.-.+|+|. |+ ++++++-.++.|+++| .+|+ .+..+.. .......+|+++|+
T Consensus 30 ~P~~ia~~--pd----G~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pd 83 (354)
T 3a9g_A 30 VPWSIAPL--GG----GRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPE 83 (354)
T ss_dssp CEEEEEEE--ET----TEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTT
T ss_pred CCeEEEEc--CC----CeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCC
Confidence 35689999 98 7777766679999997 4565 2222211 11235899999943
No 342
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=61.58 E-value=2.1e+02 Score=32.14 Aligned_cols=109 Identities=8% Similarity=0.066 Sum_probs=60.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeece--eee--ccCcceEEEEEC-----CCEEEEEe
Q 001391 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS--VLY--GHNARVWDCCLT-----DSFIITAG 325 (1088)
Q Consensus 255 h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~--~~~--~h~~~I~~v~~~-----~~~l~sg~ 325 (1088)
.-....+|+|.|+|+++++-...+.|++++..++.. ..+... .+. ........++|+ +..|+...
T Consensus 25 ~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~------~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSV------KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE------EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred CCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE------eEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 345678999999999777765445788887654322 222100 010 124567899998 34554443
Q ss_pred C-------------CCcEEEEcCC-C--c-----ee-EEEcccCCCCeEEEEEcCCCCEEEEEeCC
Q 001391 326 E-------------DCTCRVWGSD-G--K-----QL-KMIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (1088)
Q Consensus 326 ~-------------Dg~i~vWd~~-~--~-----~~-~~~~~h~~~~V~~l~~~~dg~~l~tg~~D 369 (1088)
. ...|..|+.+ + + .+ ..+..........|+|.|||.+.++.+..
T Consensus 99 s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~ 164 (454)
T 1cru_A 99 TFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQ 164 (454)
T ss_dssp EEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCT
T ss_pred eccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCC
Confidence 2 1345555542 1 1 11 11221111136799999999977776643
No 343
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=60.42 E-value=2.8e+02 Score=33.31 Aligned_cols=457 Identities=11% Similarity=0.035 Sum_probs=214.1
Q ss_pred eeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEEECCC
Q 001391 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97 (1088)
Q Consensus 18 ~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~ 97 (1088)
..|.++... .+ + .|-.|++.-|..||..+.+....... ....|..+... ++ .+.+...+
T Consensus 63 ~~i~~i~~d--~~----g-~lWigT~~Gl~~yd~~~~~f~~~~~~-~~~~i~~i~~~--------~g----~lWigt~~- 121 (758)
T 3ott_A 63 TRIYCGVII--DN----T-YLYMGTDNGILVYNYRADRYEQPETD-FPTDVRTMALQ--------GD----TLWLGALN- 121 (758)
T ss_dssp SCEEEEEEE--TT----T-EEEEEETTEEEEEETTTTEECCCSCC-CCSCEEEEEEE--------TT----EEEEEETT-
T ss_pred ceEEEEEEc--CC----C-cEEEEeCCCeEEEeCCCCEEECcccC-CCceEEEEEec--------CC----cEEEEcCC-
Confidence 347787766 54 3 55566655588999887653321011 11235555432 33 44444444
Q ss_pred EEEEEEeccCCCCCCCCCCccccccceeeec-c-CCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEecc
Q 001391 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSL-P-RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS 175 (1088)
Q Consensus 98 ~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l-~-~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~ 175 (1088)
.+..++..... .+..... . .....|.++.... ++.+. .|+.+ -+..++..+++.. .+..
T Consensus 122 Gl~~~~~~~~~-------------~~~~~~~~~~l~~~~i~~i~~d~---~g~lW-igt~~-Gl~~~~~~~~~~~-~~~~ 182 (758)
T 3ott_A 122 GLYTYQLQSRK-------------LTSFDTRRNGLPNNTIYSIIRTK---DNQIY-VGTYN-GLCRYIPSNGKFE-GIPL 182 (758)
T ss_dssp EEEEEETTTCC-------------EEEECHHHHCCSCSCEEEEEECT---TCCEE-EEETT-EEEEEETTTTEEE-EECC
T ss_pred cceeEeCCCCe-------------EEEeccCCCCcCCCeEEEEEEcC---CCCEE-EEeCC-CHhhCccCCCceE-EecC
Confidence 67777765322 1111000 0 1234688888766 66644 45544 4777887666532 2221
Q ss_pred CC-----ceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCceeEecccccceeeeE
Q 001391 176 PE-----RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (1088)
Q Consensus 176 ~~-----~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1088)
+. ...+.++.. +.++..|-.|+. +.+..++..+. ......
T Consensus 183 ~~~~~~~~~~i~~i~~---d~~~~~lWigt~-~Gl~~~~~~~~-------------------------------~~~~~~ 227 (758)
T 3ott_A 183 PVHSSQSNLFVNSLLE---DTTRQCVWIGTE-GYLFQYFPSTG-------------------------------QIKQTE 227 (758)
T ss_dssp CCCTTCSSCCEEEEEE---ETTTTEEEEEEE-EEEEEEETTTT-------------------------------EEEEEE
T ss_pred CCccccccceeEEEEE---ECCCCEEEEEEC-CCCeEEcCCCC-------------------------------eEEecc
Confidence 11 112444432 233443333443 45777776511 011111
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeecee---eeccCcceEEEEEC-CCEEEEEeC
Q 001391 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSV---LYGHNARVWDCCLT-DSFIITAGE 326 (1088)
Q Consensus 251 ~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~---~~~h~~~I~~v~~~-~~~l~sg~~ 326 (1088)
.+ ....|.++...++|...+.. .+ -+.+++..+... +.+.... ..-....|.++... ...|-.|..
T Consensus 228 ~l--~~~~i~~i~~d~~g~lWigT-~~-Gl~~~~~~~~~~------~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~ 297 (758)
T 3ott_A 228 AF--HNNSIKSLALDGNGDLLAGT-DN-GLYVYHNDTTPL------QHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTD 297 (758)
T ss_dssp EE--EEEEEEEEEECTTCCEEEEE-TT-EEEEECCTTSCC------EEECCCTTCTTSCSCSCEEEEEECTTCCEEEEES
T ss_pred CC--CCCeEEEEEEcCCCCEEEEe-CC-ceeEEecCCCcE------EEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeC
Confidence 11 13458888888888766544 44 477787765432 1111000 00122458888776 344555666
Q ss_pred CCcEEEEcCCCceeEEEc------ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcce
Q 001391 327 DCTCRVWGSDGKQLKMIK------EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEI 400 (1088)
Q Consensus 327 Dg~i~vWd~~~~~~~~~~------~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1088)
.| +.+..... ....+. ......|.++....+|.+-+. +.+| +..++........+ ..
T Consensus 298 ~G-l~~~~~~~-~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~~~-------------~~ 360 (758)
T 3ott_A 298 YG-ISLSRYNS-ALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGERHDA-------------IW 360 (758)
T ss_dssp SS-EEEECCCC--CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSCCCC-------------EE
T ss_pred Cc-ccccccCC-ceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeeccccccccee-------------EE
Confidence 66 54444322 222221 011225889888888875544 4555 55555432110000 00
Q ss_pred EEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCcceeEEeeeec-----CCcceEEEecCCC
Q 001391 401 FSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVS-----EGMPIICMDLLSN 475 (1088)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~~~~~~~-----~~~~i~~l~~~~~ 475 (1088)
+.. ..... . -....|.++...+++.+.++|. +.+..++. .+.++....... ....+.++....
T Consensus 361 ~~~--~~~~~---~--l~~~~v~~i~~d~~g~lWigt~-~GL~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~i~~d~- 428 (758)
T 3ott_A 361 YRM--GDKTY---P--LSHNRIRHIYEDKEQQLWIATD-GSINRYDY---ATRQFIHYNIVDNTGTYNTNWTYYIFEDT- 428 (758)
T ss_dssp ECT--TCSSS---C--CSCSCEEEEEECTTSCEEEEET-TEEEEEET---TTTEEEEEEEECCC--CBSSSEEEEEECT-
T ss_pred ecc--CCcCC---C--CCCCceEEEEECCCCCEEEEeC-CcHhhcCc---CCCcEEEeecCCCcCCCCCceEEEEEEcC-
Confidence 000 00000 0 0123588998888899999984 56765443 333333322111 112344443322
Q ss_pred CCCCcCCCCCeEEEecCCCCEEEEEEcCCCcCcceeee--eeee--ccccc-eeeeEEEeecCCCeEEEEECCCCeEEEE
Q 001391 476 EPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFT--FTWS--AGIER-QLLGTYWCKSLGHRFIFTADPKGRLKLW 550 (1088)
Q Consensus 476 ~~~~s~~~~~~la~g~~dg~I~iw~~~~~~~~~~~~~~--~~~~--~~~~~-~~~~~~~~~s~dg~~L~s~~~dg~i~vw 550 (1088)
...|-+|+..+-+..++...........+. .... ..... .+.. .+...+|.+.+.++..+-|..+
T Consensus 429 --------~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~--i~~d~~g~lWi~~~t~~Gl~~~ 498 (758)
T 3ott_A 429 --------AGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQ--IIPDNEGNVWVLLYNNKGIDKI 498 (758)
T ss_dssp --------TSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEE--EEECTTSCEEEEETTCSSEEEE
T ss_pred --------CCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeee--EEEcCCCCEEEEccCCCCcEEE
Confidence 245666776667878775421000000010 0000 00011 1222 2345677776633333447778
Q ss_pred ecCCCCCcccccCCcccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcc
Q 001391 551 QLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (1088)
Q Consensus 551 d~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~ 612 (1088)
|..... . .....-.......+.++....+|.+.+. +..| +..|+..+.
T Consensus 499 d~~~~~----~--------~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~ 546 (758)
T 3ott_A 499 NPRTRE----V--------TKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDE 546 (758)
T ss_dssp ETTTTE----E--------EEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--C
T ss_pred eCCCCc----e--------EEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCC
Confidence 865331 0 1000000011245777777777887754 4444 778876543
No 344
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=60.25 E-value=1.7e+02 Score=30.80 Aligned_cols=172 Identities=11% Similarity=0.097 Sum_probs=93.5
Q ss_pred EEEeccCCeEEEEecCCeEEEEEeccCCcceeE----E---eeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCE
Q 001391 424 CLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWN----K---ILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNM 496 (1088)
Q Consensus 424 ~l~~s~~~~ll~~t~~g~i~~~~~~~~~~~~~~----~---~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I 496 (1088)
.+.-+....+++.|+.|.++.+..++.....|. . ++....+..|..+..... ..++..++..+..|.+
T Consensus 47 ~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~-----~~~~~~ll~~T~~G~~ 121 (307)
T 1zi0_A 47 LLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTE-----FEEGVKVFMATANGTV 121 (307)
T ss_dssp EEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESC-----CCTTCEEEEEETTSEE
T ss_pred EEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCCCCCEEEEEEEecc-----CCCCcEEEEEeCCCeE
Confidence 333445668999999999999887765443321 1 112233445555533221 1234678889999999
Q ss_pred EEEEEcCCCcCcc-eeeeeeeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeee
Q 001391 497 TIVRVVGDVHTPQ-LSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEF 575 (1088)
Q Consensus 497 ~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~ 575 (1088)
+-..+..-..... ........ ....+..+..+ .. ...++..+.+|.+..+....-...... .. -+...
T Consensus 122 Krt~l~e~~~~~r~G~~~i~l~--~~d~lv~~~~~-~~-~~~i~l~T~~G~~irf~~~~v~~~gr~-----a~--Gv~~i 190 (307)
T 1zi0_A 122 KKTVLTEFNRLRTAGKVAIKLV--DGDELIGVDLT-SG-EDEVMLFSAEGKVVRFKESSVRAMGCN-----TT--GVRGI 190 (307)
T ss_dssp EEEEGGGGTTCCTTCEESSCCC--TTCCEEEEEEE-CT-TCEEEEEETTSEEEEEEGGGSCBCCTT-----CC--CEECC
T ss_pred EEEEHHHhhccccCCeEEEEEC--CCCEEEEEEEe-CC-CCEEEEECCCCcEEEEEHHHcCccCCC-----CC--CeEeE
Confidence 9887653222111 11111111 12334443332 33 344555667888887877643211110 00 00011
Q ss_pred ccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCc
Q 001391 576 SSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (1088)
Q Consensus 576 ~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~ 611 (1088)
...-...|.++....++..|++.+..|.++-.+++.
T Consensus 191 ~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 191 RLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp CCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred EeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 112355677776666667888999999999888754
No 345
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=58.21 E-value=1.4e+02 Score=35.94 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=33.6
Q ss_pred CCCEEEEEEcC------CcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCC--eEEEEEec
Q 001391 146 GNRSLAIGCSD------NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN--EIIVWKVD 211 (1088)
Q Consensus 146 d~~~lasgs~D------g~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg--~I~vwd~~ 211 (1088)
++.+++.||.+ +.+.+||..+.+....-..+......++..+ .++.+++.|+.++ .+.+||..
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~---~~~~iyv~GG~~~~~~v~~yd~~ 521 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSL---PDGNVLILGGVTEGPAMLLYNVT 521 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEEC---TTSCEEEECCBCSSCSEEEEETT
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEE---cCCEEEEECCCCCCCCEEEEECC
Confidence 45566667643 3578899887654332222211111122221 2566777776554 57788876
No 346
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=56.63 E-value=2.5e+02 Score=31.48 Aligned_cols=61 Identities=10% Similarity=0.009 Sum_probs=36.6
Q ss_pred ceEEEEecccccccCCCccceeeEEEEECC-CEEEEEEeccCCCCCCCCCCccccccceeeecc------CCCCcEEEEE
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFGE-KRVKLFELNFELSPNSQYQPETCVNLSLVQSLP------RLSHWVFDVC 139 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~gd-~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~------~h~~~I~~v~ 139 (1088)
..++|+|. |+| .++++-.. +.|++++..... ...+..+. ........|+
T Consensus 28 ~P~~~a~~-------pdG----~l~V~e~~gg~I~~~~~~~g~-------------~~~~~~~~~~~~~~~g~~Gllgia 83 (454)
T 1cru_A 28 KPHALLWG-------PDN----QIWLTERATGKILRVNPESGS-------------VKTVFQVPEIVNDADGQNGLLGFA 83 (454)
T ss_dssp SEEEEEEC-------TTS----CEEEEETTTCEEEEECTTTCC-------------EEEEEECTTCCCCTTSSCSEEEEE
T ss_pred CceEEEEc-------CCC----cEEEEEcCCCEEEEEECCCCc-------------EeEEecCCccccccCCCCceeEEE
Confidence 36789998 887 67777665 467777643211 12222221 1245678999
Q ss_pred EecccCC---CCEEEEEE
Q 001391 140 FLKVCNG---NRSLAIGC 154 (1088)
Q Consensus 140 f~p~~~d---~~~lasgs 154 (1088)
|+| + +..|....
T Consensus 84 ~~P---df~~~g~lYv~~ 98 (454)
T 1cru_A 84 FHP---DFKNNPYIYISG 98 (454)
T ss_dssp ECT---TTTTSCEEEEEE
T ss_pred ECC---CcCcCCEEEEEE
Confidence 999 6 66665554
No 347
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=55.64 E-value=1.3e+02 Score=36.23 Aligned_cols=108 Identities=15% Similarity=0.133 Sum_probs=54.0
Q ss_pred CCCCEEEEEECCC--cEEEEEcCCCcccCCCCceeeece-eeeccCcceEEEEEC---CCEEEEEeC--C-----CcEEE
Q 001391 266 SCGSKLVSVSDDR--SARIWEVRAEYWKDSDSIEEVGSS-VLYGHNARVWDCCLT---DSFIITAGE--D-----CTCRV 332 (1088)
Q Consensus 266 p~g~~l~s~s~Dg--~v~iWd~~~~~~~~~~~~~~i~~~-~~~~h~~~I~~v~~~---~~~l~sg~~--D-----g~i~v 332 (1088)
.+++.++.|+.++ .+.+||..+... ..+.+. ..........++.+. +.+++.||. + ..+.+
T Consensus 499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W------~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~ 572 (695)
T 2zwa_A 499 PDGNVLILGGVTEGPAMLLYNVTEEIF------KDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAII 572 (695)
T ss_dssp TTSCEEEECCBCSSCSEEEEETTTTEE------EECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEE
T ss_pred cCCEEEEECCCCCCCCEEEEECCCCce------EEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEE
Confidence 3777788877654 689999988654 111100 011111111224444 446677765 2 35788
Q ss_pred EcCCCce------eEEEcc--cCCCCeEEEEEcCCCCEEEEEeCC--------CCEEEEEcCC
Q 001391 333 WGSDGKQ------LKMIKE--HIGRGIWRCLYDSLSSLLVTAGFD--------SAIKVHQFQA 379 (1088)
Q Consensus 333 Wd~~~~~------~~~~~~--h~~~~V~~l~~~~dg~~l~tg~~D--------g~I~iwd~~~ 379 (1088)
||+.... ...+.. ...+.-.+++...++.+++.||.+ ..+.+||+..
T Consensus 573 yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 573 FKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp EEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred EEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence 8883322 222211 111111233333446777777753 3467777643
No 348
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=45.98 E-value=2.9e+02 Score=29.11 Aligned_cols=207 Identities=7% Similarity=0.015 Sum_probs=105.9
Q ss_pred cCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEE-C-CCEEEEEeCCCcEEEEcCC------
Q 001391 265 SSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCL-T-DSFIITAGEDCTCRVWGSD------ 336 (1088)
Q Consensus 265 sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~-~-~~~l~sg~~Dg~i~vWd~~------ 336 (1088)
-|+...+++.+.+|.|+--.+..-+........... ..+.... .+..+.. . ...++..+..|.++-....
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~-~~lke~D-~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~ 82 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSS-FDLNDGD-EIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSS 82 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEEC-CCCCTTC-CEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC--
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCcee-cccCCCC-EEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCC
Confidence 356678899999999998877654221000000111 1222222 2333332 2 5678888888887766541
Q ss_pred ----CceeE-EEcccCCCCeEEEEEcC---CCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCC
Q 001391 337 ----GKQLK-MIKEHIGRGIWRCLYDS---LSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNF 408 (1088)
Q Consensus 337 ----~~~~~-~~~~h~~~~V~~l~~~~---dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (1088)
|.++. .+.-..++.|.++...+ +..+|+..+..|.++--.+..-....-. . +..+
T Consensus 83 r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~----------G--~~~i----- 145 (312)
T 1suu_A 83 RASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSR----------G--VIVI----- 145 (312)
T ss_dssp -----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC--------------C--EECB-----
T ss_pred ccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCC----------c--EEEE-----
Confidence 11110 11111223466654443 4567888899999998877431110000 0 0000
Q ss_pred ccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEeccCCc----ceeEEeeeecCCcceEEEecCCCCCCCcCCCC
Q 001391 409 SEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDS----VNWNKILQVSEGMPIICMDLLSNEPKYPCGID 484 (1088)
Q Consensus 409 ~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~~~~----~~~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~ 484 (1088)
.+...+.-+......++..+++.|.+|+...+...+... ..=........+..+..+.... .+
T Consensus 146 -----~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~--------~~ 212 (312)
T 1suu_A 146 -----KLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVK--------EN 212 (312)
T ss_dssp -----CCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECT--------TC
T ss_pred -----ecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEEC--------CC
Confidence 111112223333344566899999999998887655211 1111223333344555554422 23
Q ss_pred CeEEEecCCCCEEEEEEcC
Q 001391 485 DWVALGDGKGNMTIVRVVG 503 (1088)
Q Consensus 485 ~~la~g~~dg~I~iw~~~~ 503 (1088)
..+++.+..|..+...++.
T Consensus 213 ~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 213 PYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp SEEEEEETTSEEEEEEGGG
T ss_pred CeEEEEECCCceEEEEHHH
Confidence 5677888889888887754
No 349
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=45.80 E-value=4.6e+02 Score=31.38 Aligned_cols=327 Identities=13% Similarity=0.097 Sum_probs=164.2
Q ss_pred ceEEecCCCcee-------eeeEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCeeEEEEe----eeCCcceEEEEec
Q 001391 6 LSEWRLDVGQYL-------GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQ----VFHGIRLHGISCN 74 (1088)
Q Consensus 6 i~iWdl~~g~~~-------~~V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~~~~~~~----~~~~~~V~~i~~s 74 (1088)
+..+|..+.++. ..|.++... + + .|-.|+.+-|..||..+++.. .+. ......|.++...
T Consensus 84 l~~yd~~~~~f~~~~~~~~~~i~~i~~~---~----g-~lWigt~~Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d 154 (758)
T 3ott_A 84 ILVYNYRADRYEQPETDFPTDVRTMALQ---G----D-TLWLGALNGLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRT 154 (758)
T ss_dssp EEEEETTTTEECCCSCCCCSCEEEEEEE---T----T-EEEEEETTEEEEEETTTCCEE-EECHHHHCCSCSCEEEEEEC
T ss_pred eEEEeCCCCEEECcccCCCceEEEEEec---C----C-cEEEEcCCcceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEc
Confidence 556666655421 236665433 2 3 455555446889998876543 331 1122357777765
Q ss_pred ccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccC----CCCcEEEEEEecccCCCCEE
Q 001391 75 FINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR----LSHWVFDVCFLKVCNGNRSL 150 (1088)
Q Consensus 75 ~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~----h~~~I~~v~f~p~~~d~~~l 150 (1088)
.++ .+.+... +-+..++..... .+... ... ....|.++...+ ++..|
T Consensus 155 -------~~g----~lWigt~-~Gl~~~~~~~~~-------------~~~~~-~~~~~~~~~~~i~~i~~d~---~~~~l 205 (758)
T 3ott_A 155 -------KDN----QIYVGTY-NGLCRYIPSNGK-------------FEGIP-LPVHSSQSNLFVNSLLEDT---TRQCV 205 (758)
T ss_dssp -------TTC----CEEEEET-TEEEEEETTTTE-------------EEEEC-CCCCTTCSSCCEEEEEEET---TTTEE
T ss_pred -------CCC----CEEEEeC-CCHhhCccCCCc-------------eEEec-CCCccccccceeEEEEEEC---CCCEE
Confidence 555 4444444 456666654321 11110 111 123588888776 66655
Q ss_pred EEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCC
Q 001391 151 AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGS 230 (1088)
Q Consensus 151 asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~ 230 (1088)
..|.. +-+..+|..+++... +.......+.++.. ..++.+.+ |+. +-+.+++..+.+
T Consensus 206 Wigt~-~Gl~~~~~~~~~~~~-~~~l~~~~i~~i~~---d~~g~lWi-gT~-~Gl~~~~~~~~~---------------- 262 (758)
T 3ott_A 206 WIGTE-GYLFQYFPSTGQIKQ-TEAFHNNSIKSLAL---DGNGDLLA-GTD-NGLYVYHNDTTP---------------- 262 (758)
T ss_dssp EEEEE-EEEEEEETTTTEEEE-EEEEEEEEEEEEEE---CTTCCEEE-EET-TEEEEECCTTSC----------------
T ss_pred EEEEC-CCCeEEcCCCCeEEe-ccCCCCCeEEEEEE---cCCCCEEE-EeC-CceeEEecCCCc----------------
Confidence 55654 457888887664322 11111222444432 34454443 343 457777765111
Q ss_pred CCCCceeEecccccceeeeEEEe--------CCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeece
Q 001391 231 SSDFKCFKLQDQQHTAVNLFRLV--------GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS 302 (1088)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~--------gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~ 302 (1088)
+..+. -....|.++....+|..-+. +..| +.+..... . .+.+...
T Consensus 263 ------------------~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiG-T~~G-l~~~~~~~-~------~~~~~~~ 315 (758)
T 3ott_A 263 ------------------LQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLG-TDYG-ISLSRYNS-A------LQFIPIS 315 (758)
T ss_dssp ------------------CEEECCCTTCTTSCSCSCEEEEEECTTCCEEEE-ESSS-EEEECCCC--------CEEEEHH
T ss_pred ------------------EEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEE-eCCc-ccccccCC-c------eeEEecc
Confidence 11111 02345888888877775443 3456 54443221 1 1111100
Q ss_pred e--eeccCcceEEEEEC-CCEEEEEeCCCcEEEEcC-CC--ceeEEEcc------cCCCCeEEEEEcCCCCEEEEEeCCC
Q 001391 303 V--LYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DG--KQLKMIKE------HIGRGIWRCLYDSLSSLLVTAGFDS 370 (1088)
Q Consensus 303 ~--~~~h~~~I~~v~~~-~~~l~sg~~Dg~i~vWd~-~~--~~~~~~~~------h~~~~V~~l~~~~dg~~l~tg~~Dg 370 (1088)
. .......|.++.-. ...|-.|..+| +..++. .+ .....+.. .....|.++.-..++++-+ |. ++
T Consensus 316 ~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~ 392 (758)
T 3ott_A 316 QITGTGDGNQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DG 392 (758)
T ss_dssp HHSCSCCCCBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TT
T ss_pred cCCCCCCCceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CC
Confidence 0 01123457777776 44555566655 555655 32 12222221 1122488998888887544 44 45
Q ss_pred CEEEEEcCCCCCCcccCCccccccCCCcceEEeeeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEE
Q 001391 371 AIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTK 446 (1088)
Q Consensus 371 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~ 446 (1088)
-+..++..+.....+ .. ++.... .....|.++...+++.+.++|..+.++.++
T Consensus 393 GL~~~~~~~~~~~~~----------------~~--~~~~~~-----~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~ 445 (758)
T 3ott_A 393 SINRYDYATRQFIHY----------------NI--VDNTGT-----YNTNWTYYIFEDTAGQLWISTCLGGIFVVD 445 (758)
T ss_dssp EEEEEETTTTEEEEE----------------EE--ECCC-------CBSSSEEEEEECTTSEEEEEESSSCEEEEE
T ss_pred cHhhcCcCCCcEEEe----------------ec--CCCcCC-----CCCceEEEEEEcCCCCEEEEECCCceEEEc
Confidence 688888754321111 00 000000 012458888888889999999877777655
No 350
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=44.01 E-value=1.6e+02 Score=33.92 Aligned_cols=116 Identities=10% Similarity=0.057 Sum_probs=64.7
Q ss_pred ceEEEEecccccccCCCccceeeEEEEEC--CCEEEEEEeccCCC--CCCCCCCccccccceeeeccCCCCcEEEEEEec
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFG--EKRVKLFELNFELS--PNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLK 142 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~g--d~~v~iw~l~~~~~--~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p 142 (1088)
..|++.++ ||| ..+++.| +.++.+++++.-.. ......|. -..+...+ -.-.....+|.+
T Consensus 324 sPHGv~vs-------PDG----kyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~----~~~~ae~e-~GlGPlHt~Fd~ 387 (638)
T 3sbq_A 324 NPHGCNTS-------SDG----KYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPR----DVIVGEPE-LGLGPLHTTFDG 387 (638)
T ss_dssp SCCCEEEC-------TTS----CEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGG----GGEEECCB-CCSCEEEEEECS
T ss_pred CCcceeeC-------CCC----CEEEEcCCCCCeEEEEEeehhhhhhhccccCcc----cceEeecc-CCCcccEEEECC
Confidence 46777877 999 6777766 79999999983110 00000111 11222222 123467789988
Q ss_pred ccCCCCEEEEEEcCCcEEEEEcCCC----------ceEEEeccCCc-eeEEEEeeecCCCCCcEEEEEec
Q 001391 143 VCNGNRSLAIGCSDNSIRVWDISNS----------SIILEVHSPER-CLLYSMKLWGDNLEALRIASGTI 201 (1088)
Q Consensus 143 ~~~d~~~lasgs~Dg~V~iWd~~~~----------~~~~~~~~~~~-~~~~s~~~~~~s~~~~~l~sg~~ 201 (1088)
+|....|.--|..|..|++... ..+.++.-+-. ......---...++|.+|++...
T Consensus 388 ---~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 388 ---RGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp ---SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred ---CCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence 8855555567999999999753 34444432211 11111000112578888888753
No 351
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=42.95 E-value=82 Score=33.96 Aligned_cols=65 Identities=11% Similarity=-0.003 Sum_probs=41.4
Q ss_pred CCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEE-ecCCeEEEEEec
Q 001391 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASG-TIYNEIIVWKVD 211 (1088)
Q Consensus 147 ~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg-~~dg~I~vwd~~ 211 (1088)
+..++.++.||.|.-.|..+|+..-++..................++..++.. +.||.|..++..
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~ 75 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAH 75 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETT
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECC
Confidence 34788899999999999999999888875521112221110001123344443 689999999876
No 352
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=41.73 E-value=4.4e+02 Score=32.80 Aligned_cols=130 Identities=13% Similarity=0.041 Sum_probs=60.6
Q ss_pred EEEEECCCCeEEEEecCCCCCcccc-cCC-cccceeeeeeeccccCceEEEEEeeeCCCEEEEEcCCCcEEEEeCCcc--
Q 001391 537 FIFTADPKGRLKLWQLCDPFSSVCY-ESS-KTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD-- 612 (1088)
Q Consensus 537 ~L~s~~~dg~i~vwd~~~~~~~~~~-~~~-~~~~~~l~~~~~~~h~~~It~l~~spdg~~LatGs~dg~I~Iw~~~~~-- 612 (1088)
.+++-...|.++-..++........ ... .=++...|..|...+. ..-.+.+ ...|+++-.||.+.-.+-...
T Consensus 128 ~v~vit~~~~Ly~l~l~~~~f~~~~~~~~~~W~~~~~p~~f~~r~p--~~l~av~--~~~l~Vsl~dGgLlrl~r~~~~~ 203 (950)
T 4gq2_M 128 IIYAITHARVLYYIRLSKTWFQLPDARLDDDWCLCYRPISFLNQKP--DLMAAIS--TSEICVSFFNGGLTKIILNPKDA 203 (950)
T ss_dssp EEEEEETTCCEEEEEECTHHHHSTTCCCCTTSEEEECCGGGTTSCE--EEEEECS--SSEEEEEETTSCEEEEEEETTTT
T ss_pred EEEEEcCCCCEEEEEECHHHccCccccccccccccccCcCccCCCc--eEEEEEc--CCeEEEEECCCCEEEEEecCCCC
Confidence 3556677788887777632110000 011 1123334555543332 2223333 446667888887655432211
Q ss_pred cc-----cccc-cccccccCcceeeccccc-ccceeEEEEEeccCCceEEEEecCCCeEEEEEeecCC
Q 001391 613 LL-----NDKS-VALHVEVSPLNYFKGAHG-ISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDR 673 (1088)
Q Consensus 613 ~~-----~~~~-~~~~~~l~~~~~~~g~hg-~~~Vtsv~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~~ 673 (1088)
.. ...+ ....+.+-|....+..++ ...+.++... ++..+++|-++|+++|+|++..++
T Consensus 204 ~~~~~~f~~~s~~~sl~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~lftl~~D~~LRiWsl~t~~ 268 (950)
T 4gq2_M 204 SHYEQHIDDSSYLFSLKKYLSLQAFKADYRSPNTIISMIFL---STYNVLVMLSLDYKLKVLDLSTNQ 268 (950)
T ss_dssp EEEEEEECCCCCCCBCC-------CCSSCCCTTCEEEEEEE---TTTTEEEEEETTCEEEEEETTTTE
T ss_pred CcceeeecCCcHHHhhhhhcccccCCCCCCCcceEEEEeec---CCCcEEEEEECCCEEEEEECCCCC
Confidence 10 0000 001112222111111121 1234444443 566899999999999999998763
No 353
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=40.70 E-value=3.8e+02 Score=28.95 Aligned_cols=63 Identities=10% Similarity=-0.052 Sum_probs=36.4
Q ss_pred ceEEEEEC----CCEEEEEeCCCcEEEEcCCCceeEEEcc------------------cCCCCeEEEEEcCC-CCEEEEE
Q 001391 310 RVWDCCLT----DSFIITAGEDCTCRVWGSDGKQLKMIKE------------------HIGRGIWRCLYDSL-SSLLVTA 366 (1088)
Q Consensus 310 ~I~~v~~~----~~~l~sg~~Dg~i~vWd~~~~~~~~~~~------------------h~~~~V~~l~~~~d-g~~l~tg 366 (1088)
.|.++++. +..+..+...+.|...+-.|+.-..+.. .....|.+|.++|. ...|..+
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg 195 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIG 195 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEE
Confidence 57888886 5677777777776666545554443321 01124788999873 3444445
Q ss_pred eCCCCE
Q 001391 367 GFDSAI 372 (1088)
Q Consensus 367 ~~Dg~I 372 (1088)
..++.|
T Consensus 196 ~~~ggl 201 (394)
T 3b7f_A 196 MSSGGV 201 (394)
T ss_dssp EETBEE
T ss_pred ECCCCE
Confidence 444433
No 354
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=36.91 E-value=3.7e+02 Score=27.70 Aligned_cols=219 Identities=12% Similarity=0.057 Sum_probs=109.2
Q ss_pred ceEEEEecccccccCCCccceeeEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCC
Q 001391 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1088)
Q Consensus 67 ~V~~i~~s~~~~~~~~d~~~~~~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d 146 (1088)
+|..|+.. .. ..++.. |+.|..|-......-+. +. .....|..++...
T Consensus 25 ~i~~ia~G-------~~-----h~~~l~-~G~v~~wG~n~~Gqlg~-----------p~----~~~~~i~~ia~G~---- 72 (282)
T 3qhy_B 25 GVDAIAGG-------YF-----HGLALK-GGKVLGWGANLNGQLTM-----------PA----ATQSGVDAIAAGN---- 72 (282)
T ss_dssp SCCEEEEC-------SS-----EEEEEE-TTEEEEEECCSSSTTSC-----------CG----GGGSCCCEEEECS----
T ss_pred CCcEEEeC-------CC-----eEEEEE-CCEEEEEeCCCCCCCCC-----------Cc----cCCCCEEEEEeCC----
Confidence 46777665 33 455555 99999998664321110 00 1123566776643
Q ss_pred CCEEEEEEcCCcEEEEEcCCCceEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCcc
Q 001391 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (1088)
Q Consensus 147 ~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s 226 (1088)
...++. . ||.|..|-....-.+.. .......+..++. .....+.-+ +|.|..|-.......+.
T Consensus 73 ~hs~~l-~-~G~v~~wG~n~~Gqlg~-P~~~~~~v~~ia~-----G~~hs~al~-~G~v~~wG~n~~gqlg~-------- 135 (282)
T 3qhy_B 73 YHSLAL-K-DGEVIAWGGNEDGQTTV-PAEARSGVDAIAA-----GAWASYALK-DGKVIAWGDDSDGQTTV-------- 135 (282)
T ss_dssp SEEEEE-E-TTEEEEEECCTTSTTCC-CGGGSSSEEEEEE-----ETTEEEEEE-TTEEEEEECCTTSTTSC--------
T ss_pred CEEEEE-E-CCEEEEeeCCCCCCCCC-CcccCCCeEEEEC-----cCCEEEEEe-CCeEEEecCCCCCcCCC--------
Confidence 233444 4 89999998754221110 0001112223322 122333334 89999997652111110
Q ss_pred CCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeec
Q 001391 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG 306 (1088)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~ 306 (1088)
+ ......|..|+...+...+ -. |+.|..|-....... ..+ ..
T Consensus 136 ---------------------~----~~~~~~i~~i~~G~~~~~~--l~-~G~v~~wG~n~~gql----g~p------~~ 177 (282)
T 3qhy_B 136 ---------------------P----AEAQSGVTALDGGVYTALA--VK-NGGVIAWGDNYFGQT----TVP------AE 177 (282)
T ss_dssp ---------------------C----GGGGSSEEEEEECSSEEEE--EE-TTEEEEEECCTTSTT----SCC------GG
T ss_pred ---------------------C----ccCCCCeEEEEcccCEEEE--EE-CCEEEEecCCCCCCC----CCc------ee
Confidence 0 0012345566554332222 23 688988877653220 000 01
Q ss_pred cCcceEEEEECCCEEEEEeCCCcEEEEcC--CCceeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 307 HNARVWDCCLTDSFIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 307 h~~~I~~v~~~~~~l~sg~~Dg~i~vWd~--~~~~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
-...|..++....+.+.- +||.+..|-. .++.-..... .. .|..++.......+++ ||.+..|-..
T Consensus 178 ~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~~-~~-~v~~i~~G~~h~~al~---~g~v~~wG~n 245 (282)
T 3qhy_B 178 AQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTEA-LS-GVSAIASGEWYSLALK---NGKVIAWGSS 245 (282)
T ss_dssp GGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGGG-GS-SCCEEEECSSCEEEEE---TTEEEEESTT
T ss_pred cCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCccc-CC-CceEEEcCCCEEEEEE---CCEEEEecCC
Confidence 124577777764444434 6999999987 2322111111 12 4777776655433333 8988888653
No 355
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=36.67 E-value=1.1e+02 Score=33.01 Aligned_cols=119 Identities=15% Similarity=0.089 Sum_probs=65.3
Q ss_pred CEEEEEe-CCeEEEEECCCCeeEEEEeeeCCcceEEEEecccccccCCCccceeeEEEE--ECCCEEEEEEeccCCCCCC
Q 001391 36 PFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL--FGEKRVKLFELNFELSPNS 112 (1088)
Q Consensus 36 ~~laag~-d~~I~vwd~~tg~~~~~~~~~~~~~V~~i~~s~~~~~~~~d~~~~~~~la~--~gd~~v~iw~l~~~~~~~~ 112 (1088)
.+|++++ ||.|.-.|.++|+.+.+++.....++....-. . . ..++ ..++. +.||.+..++...+.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~-~--~-~~~~----~~~vv~p~~dG~l~a~~~~~G~---- 78 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEP-S--R-LETY----ETLIIEPFGDGNIYYFNAHQGL---- 78 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCS-C--T-TTSS----EEEEECCSTTTEEEEEETTTEE----
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCC-c--c-ccCC----cEEEEEECCCCEEEEEECCCCc----
Confidence 4566666 89999999999999999886411122221100 0 0 0122 34444 457877777755321
Q ss_pred CCCCccccccceeeeccC--CCCcEEEEEEeccc------CCCCEEEEEEcCCcEEEEEcCCCceEEEeccC
Q 001391 113 QYQPETCVNLSLVQSLPR--LSHWVFDVCFLKVC------NGNRSLAIGCSDNSIRVWDISNSSIILEVHSP 176 (1088)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~--h~~~I~~v~f~p~~------~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~~~ 176 (1088)
.+.-..... ...++.. .=.|.- ..+..+++|+.++.+.-.|+.+|+.+.++...
T Consensus 79 ---------~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 79 ---------QKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp ---------EEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred ---------EEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 011001100 1111111 000100 04457889999999999999999998887643
No 356
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=34.19 E-value=3.2e+02 Score=34.00 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=33.5
Q ss_pred CcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCceEEEec
Q 001391 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~~~~~~~ 174 (1088)
..|.+++..+ +..++++-+.|+++|+|++.+++++.+..
T Consensus 236 ~~~~~~~~~~---~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLS---TYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEET---TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecC---CCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 3577788777 88899999999999999999999887754
No 357
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=33.44 E-value=2.3e+02 Score=32.68 Aligned_cols=71 Identities=6% Similarity=0.015 Sum_probs=46.7
Q ss_pred CcEEEEEEecccCCCCEEEEEE-cCCcEEEEEcCCC------ce-------EEEeccCCceeEEEEeeecCCCCCcEEEE
Q 001391 133 HWVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISNS------SI-------ILEVHSPERCLLYSMKLWGDNLEALRIAS 198 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~~lasgs-~Dg~V~iWd~~~~------~~-------~~~~~~~~~~~~~s~~~~~~s~~~~~l~s 198 (1088)
.....+.++| ||++++.++ .+.++.++|++.- +. ..+.+...+ -...+| +++|....+
T Consensus 323 ksPHGv~vsP---DGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlG--PlHt~F---d~~G~aYTt 394 (638)
T 3sbq_A 323 KNPHGCNTSS---DGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLG--PLHTTF---DGRGNAYTT 394 (638)
T ss_dssp SSCCCEEECT---TSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSC--EEEEEE---CSSSEEEEE
T ss_pred CCCcceeeCC---CCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCc--ccEEEE---CCCCceEee
Confidence 3456678888 999887765 4889999999742 11 222222222 233444 567855566
Q ss_pred EecCCeEEEEEec
Q 001391 199 GTIYNEIIVWKVD 211 (1088)
Q Consensus 199 g~~dg~I~vwd~~ 211 (1088)
--.|.+|.-|++.
T Consensus 395 lfidSqvvkWni~ 407 (638)
T 3sbq_A 395 LFIDSQVVKWNME 407 (638)
T ss_dssp ETTTTEEEEEEHH
T ss_pred eeecceEEEEecc
Confidence 6689999999997
No 358
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=31.65 E-value=23 Score=29.35 Aligned_cols=35 Identities=37% Similarity=0.716 Sum_probs=25.0
Q ss_pred ceEEEE----EEEeecchhhhhhhhc------------cCcceeeeeeeec
Q 001391 1021 RLTVCF----VVVACSDATLALRALI------------LPLRLWFEVAMLV 1055 (1088)
Q Consensus 1021 ~~~~~~----~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ 1055 (1088)
|+|||| +||.|-|+.++.|-|. .+..-||.|..|.
T Consensus 4 KvtV~fg~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~ 54 (85)
T 2ns5_A 4 KVTVCFGRTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLE 54 (85)
T ss_dssp EEEEEETTEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEE
T ss_pred EEEEEECCEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEE
Confidence 789998 8999999866555442 2356688877653
No 359
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=31.15 E-value=5.3e+02 Score=27.83 Aligned_cols=255 Identities=11% Similarity=0.050 Sum_probs=124.5
Q ss_pred eEEEEECCCEEEEEEeccCCCCCCCCCCccccccceeeeccCCCCcEEEEEEecccCCCCEEEEEEcCCcEEEEEcCCCc
Q 001391 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (1088)
Q Consensus 89 ~~la~~gd~~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~v~f~p~~~d~~~lasgs~Dg~V~iWd~~~~~ 168 (1088)
..++...++.|..|-......-+..-.. .......+..+. ...+..++++. .....+.-..||.|..|-....-
T Consensus 64 ~~~~l~~~G~v~~wG~n~~GqLG~g~~~-~~~~p~~v~~~~--~~~~~~v~i~~---G~~h~~al~~~G~v~~wG~n~~G 137 (389)
T 3kci_A 64 TLFAVTADGKLYATGYGAGGRLGIGGTE-SVSTPTLLESIQ--HVFIKKVAVNS---GGKHCLALSSEGEVYSWGEAEDG 137 (389)
T ss_dssp EEEEEETTSCEEEEECCGGGTTSSSSSC-CEEEEEECGGGT--TSCEEEEEECT---TCSEEEEEETTSCEEEEECCGGG
T ss_pred eEEEEcCCCcEEEEECCCCCCCCCCCcC-CccCCEEccccc--CCceeEEEECc---CCCeEEEEcCCCCEEEEeCCCCC
Confidence 6777888999999976532211110000 000111222221 23455566665 55565666789999999754311
Q ss_pred -----------eEEEeccCCceeEEEEeeecCCCCCcEEEEEecCCeEEEEEeccCccccCCCCCCCccCCCCCCCCcee
Q 001391 169 -----------IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCF 237 (1088)
Q Consensus 169 -----------~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~I~vwd~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 237 (1088)
....+.......+..++. .....++-+.+|.|..|-.......+..... .
T Consensus 138 qLG~g~~~~~~~p~~v~~l~~~~i~~va~-----G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~------------~-- 198 (389)
T 3kci_A 138 KLGHGNRSPCDRPRVIESLRGIEVVDVAA-----GGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------------D-- 198 (389)
T ss_dssp TTCSSSCCCEEEEEECGGGTTSCEEEEEE-----CSSEEEEEETTSCEEEEECCGGGTTCSSSCC------------C--
T ss_pred cCCCCCCccCcCCeEecccCCCeEEEEEe-----CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCc------------c--
Confidence 011111111111222221 1234445567899999976522211111000 0
Q ss_pred EecccccceeeeEEEeC-CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcccCC-CCceeeeceeeec-cCcceEEE
Q 001391 238 KLQDQQHTAVNLFRLVG-HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS-DSIEEVGSSVLYG-HNARVWDC 314 (1088)
Q Consensus 238 ~~~~~~~~~~~~~~~~g-h~~~V~~v~~sp~g~~l~s~s~Dg~v~iWd~~~~~~~~~-~~~~~i~~~~~~~-h~~~I~~v 314 (1088)
...+. .+.. ....|..++......+.+.-..|+.|..|-......... .......+..... ....|..+
T Consensus 199 -------~~~p~-~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v 270 (389)
T 3kci_A 199 -------QLKPK-LVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKV 270 (389)
T ss_dssp -------EEEEE-ECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEE
T ss_pred -------cccce-EecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEE
Confidence 00111 1111 123566776654445666777899999997654322110 0001111111111 22346777
Q ss_pred EECCCEEEEEeCCCcEEEEcCC--Cc----------eeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 315 CLTDSFIITAGEDCTCRVWGSD--GK----------QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 315 ~~~~~~l~sg~~Dg~i~vWd~~--~~----------~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
+....+.+.-..||.+..|-.. ++ ....+....+..|..++.... ..+.-..||.|..|-..
T Consensus 271 ~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~--h~~al~~~G~v~~wG~n 344 (389)
T 3kci_A 271 ECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSL--HCVCCTEDGEVYTWGDN 344 (389)
T ss_dssp EEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSS--EEEEEETTCCEEEEECC
T ss_pred eCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccC--eEEEECCCCCEEEeeCC
Confidence 7666666666899999999862 11 112223333334767665433 34555789999999763
No 360
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=30.22 E-value=6.2e+02 Score=28.29 Aligned_cols=30 Identities=7% Similarity=-0.030 Sum_probs=22.9
Q ss_pred CcEEEEEEecccCCCC-EEEEEEcCCcEEEEEcC
Q 001391 133 HWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDIS 165 (1088)
Q Consensus 133 ~~I~~v~f~p~~~d~~-~lasgs~Dg~V~iWd~~ 165 (1088)
..-+.|+|.| ++. .|+++...|.|++++..
T Consensus 14 ~~P~~~a~~p---dG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSG---DGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCS---SSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECC---CCCeEEEEEeCCceEEEEeCC
Confidence 4568999999 885 45556788999999754
No 361
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=27.93 E-value=5.9e+02 Score=27.33 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=24.3
Q ss_pred ceEEEEecc---CCeEEEEecCCeEEEEEeccCCcceeEEe
Q 001391 421 YVRCLHLTS---EDTLYIATNHGYLYHTKLCDMDSVNWNKI 458 (1088)
Q Consensus 421 ~V~~l~~s~---~~~ll~~t~~g~i~~~~~~~~~~~~~~~~ 458 (1088)
.|.++++.| ++.+++++..+.|+ ..+.....|..+
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~---~S~DgG~tW~~~ 153 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLF---RSTDHGASWEPV 153 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEE---EESSTTSBCEEC
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEE---EEcCCCCCeEEC
Confidence 577888875 56888888777777 344444567665
No 362
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=25.61 E-value=5.6e+02 Score=26.27 Aligned_cols=118 Identities=9% Similarity=0.009 Sum_probs=70.1
Q ss_pred CCCEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEEC--CCEEEEEeCCCcEEE
Q 001391 256 EGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRV 332 (1088)
Q Consensus 256 ~~~V~~v~~sp-~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~~--~~~l~sg~~Dg~i~v 332 (1088)
...|..+.... +..+++..+.+|.++-..+..-. ........+ .+.. ...+..+... ...++..+..|.+..
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~~~~G~~~i---~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r 141 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-YKAQGMPII---KLTE-GDEVVSIASSVDETHILLFTKKGRVAR 141 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-TCSTTEECS---CCCT-TCCEEEEEECCSSCEEEEEETTSEEEE
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-hhcCCeEEE---ecCC-CCEEEEEEEeCCCCEEEEEECCCEEEE
Confidence 34455543321 46789999999999999876642 110001111 2222 2344444443 567888999999888
Q ss_pred EcCC-----Cc---eeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 001391 333 WGSD-----GK---QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1088)
Q Consensus 333 Wd~~-----~~---~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~ 378 (1088)
+... ++ -...++-..++.|.++...+++..++..+..|.++...+.
T Consensus 142 ~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~ 195 (276)
T 3no0_A 142 FSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHE 195 (276)
T ss_dssp EEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGG
T ss_pred EEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHH
Confidence 7751 11 1111222222347776666666788899999999988874
No 363
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=23.61 E-value=5.5e+02 Score=28.74 Aligned_cols=53 Identities=8% Similarity=-0.039 Sum_probs=31.8
Q ss_pred eEEEEEeccCCCCCCCCEEEEEeCCeEEEEECCCCe---eEEEEe-ee-C------CcceEEEEeccc
Q 001391 20 ISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGT---LIRPFQ-VF-H------GIRLHGISCNFI 76 (1088)
Q Consensus 20 V~~v~fs~~pd~~~~~~~laag~d~~I~vwd~~tg~---~~~~~~-~~-~------~~~V~~i~~s~~ 76 (1088)
-.+|+|. || ++++++++-..|.|++++..... .+..+. .. . .....+|+|+|+
T Consensus 16 P~~~a~~--pd--G~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 16 PVGALHS--GD--GSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp EEEEECC--SS--SSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred ceEEEEC--CC--CCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 4588999 99 22257777668999999754221 222111 01 0 235789999954
No 364
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=22.99 E-value=7.5e+02 Score=26.81 Aligned_cols=161 Identities=9% Similarity=0.109 Sum_probs=80.2
Q ss_pred cEEEEEcCCC--ceEEEeccCC-----ceeEEEEeeecCCC----CCcEEEEE-ecCCeEEEEEeccCccccCCCCCCCc
Q 001391 158 SIRVWDISNS--SIILEVHSPE-----RCLLYSMKLWGDNL----EALRIASG-TIYNEIIVWKVDWEHVAPLLNSPEGN 225 (1088)
Q Consensus 158 ~V~iWd~~~~--~~~~~~~~~~-----~~~~~s~~~~~~s~----~~~~l~sg-~~dg~I~vwd~~~~~~~~~~~~~~~~ 225 (1088)
.|.+||+.+. +.++++.-+. .+.+..+++--..+ ++.+++.. ...+.|.|+|+.+++.-.... ...
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~--~~~ 201 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTH--PTF 201 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEEC--GGG
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEcc--CCC
Confidence 5778899888 8887766432 33455555531111 13344333 356789999998433211100 000
Q ss_pred cCCCCCCCCceeEecccccceeeeEEEeCCCCCEEEEEEcCC----CCEEEEEECCCcEEEEEcCCCcccCCCCceeeec
Q 001391 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC----GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS 301 (1088)
Q Consensus 226 s~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~v~~sp~----g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~ 301 (1088)
.++ ....+.+ .+..+. -...|..|+++|+ ++.|.-....+ -++|.+.+.-+........+
T Consensus 202 ~pd----~~~~~~i-----~G~~~~----~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v-- 265 (381)
T 3q6k_A 202 KAE----RPTKFDY-----GGKEYE----FKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNP-- 265 (381)
T ss_dssp SCC----SCEEEEE-----TTEEEE----ECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCC--
T ss_pred ccc----cCcceEE-----CCEEeE----eccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhce--
Confidence 000 0000000 111111 1356999999998 67776665543 35566654322111111222
Q ss_pred eeeeccC---cceEEEEEC---CCEEEEEeCCCcEEEEcCCC
Q 001391 302 SVLYGHN---ARVWDCCLT---DSFIITAGEDCTCRVWGSDG 337 (1088)
Q Consensus 302 ~~~~~h~---~~I~~v~~~---~~~l~sg~~Dg~i~vWd~~~ 337 (1088)
...|.. ..-..+++. +.++++--+...|..|+..+
T Consensus 266 -~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 266 -ELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp -EEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred -EEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 222222 233345553 45667777888999999865
No 365
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=21.93 E-value=6.9e+02 Score=26.01 Aligned_cols=170 Identities=14% Similarity=0.126 Sum_probs=89.9
Q ss_pred CCEEEEEEc---CCCCEEEEEECCCcEEEEEcCCCcccCCCCceeeeceeeeccCcceEEEEE-C-CCEEEEEeCCCcEE
Q 001391 257 GSIFRIEWS---SCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCL-T-DSFIITAGEDCTCR 331 (1088)
Q Consensus 257 ~~V~~v~~s---p~g~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~i~~~~~~~h~~~I~~v~~-~-~~~l~sg~~Dg~i~ 331 (1088)
..|.++... +++.+++..+..|.++--.+..-..... ..... ..+..+ ..+..+.. . ...++..+.+|.+.
T Consensus 95 e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r--~G~~~-i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~i 170 (307)
T 1zi0_A 95 ERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRT--AGKVA-IKLVDG-DELIGVDLTSGEDEVMLFSAEGKVV 170 (307)
T ss_dssp CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCT--TCEES-SCCCTT-CCEEEEEEECTTCEEEEEETTSEEE
T ss_pred CEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhcccc--CCeEE-EEECCC-CEEEEEEEeCCCCEEEEECCCCcEE
Confidence 345554332 3567899999999999988764322110 01111 133333 44444433 3 46788888999888
Q ss_pred EEcCC-----Cc---eeEEEcccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEcCCCCCCcccCCccccccCCCcceEEe
Q 001391 332 VWGSD-----GK---QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSI 403 (1088)
Q Consensus 332 vWd~~-----~~---~~~~~~~h~~~~V~~l~~~~dg~~l~tg~~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1088)
.++.. ++ -...+.-..++.|-++...+++..|++.+..|.++-.++..-..+...+. -+..
T Consensus 171 rf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~k----------G~~~- 239 (307)
T 1zi0_A 171 RFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATK----------GVIS- 239 (307)
T ss_dssp EEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSC----------CEES-
T ss_pred EEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCC----------CEEe-
Confidence 77762 11 12222222333577776555556788888899888877632111100000 0000
Q ss_pred eeCCCccceeeccCCCCceEEEEeccCCeEEEEecCCeEEEEEecc
Q 001391 404 KIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCD 449 (1088)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ll~~t~~g~i~~~~~~~ 449 (1088)
....+..+.-|......++..+++.|++|.+..+...+
T Consensus 240 --------~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 240 --------IKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp --------SCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred --------eEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 00011112223333344556788999999988766544
No 366
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=20.19 E-value=7.8e+02 Score=25.94 Aligned_cols=166 Identities=16% Similarity=0.103 Sum_probs=84.0
Q ss_pred CCeEEEEecCCeEEEEEeccCCcce--eEEeeeecCCcceEEEecCCCCCCCcCCCCCeEEEecCCCCEEEEEEc--CCC
Q 001391 430 EDTLYIATNHGYLYHTKLCDMDSVN--WNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVV--GDV 505 (1088)
Q Consensus 430 ~~~ll~~t~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g~~dg~I~iw~~~--~~~ 505 (1088)
+..++..|.+|++....+.+....+ -........+..+..+.... ..+.++..+..|.+..+... .-.
T Consensus 109 e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~--------~~d~ill~T~~G~~~rf~~~~~eip 180 (327)
T 3uc1_A 109 APYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCS--------AGDDLLLVSANGQSIRFSATDEALR 180 (327)
T ss_dssp SSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEEC--------TTCEEEEEETTSEEEEEECCTTTSC
T ss_pred CCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEec--------CCCEEEEEECCCeEEEEECcccccC
Confidence 4578899999999988765543221 01122222344444443322 23567777888988888776 211
Q ss_pred cCcceeeee-eeeccccceeeeEEEeecCCCeEEEEECCCCeEEEEecCCCCCcccccCCcccceeeeeeeccccCceEE
Q 001391 506 HTPQLSFTF-TWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIM 584 (1088)
Q Consensus 506 ~~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~L~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~l~~~~~~~h~~~It 584 (1088)
.......-. .........+..+. .. .++.+|+..+..|.++.-.+..-.....- . .-.... .+... ...+.
T Consensus 181 ~~gr~a~Gv~~i~L~~~d~Vv~~~-~~-~~~~~ll~~T~~G~~Krt~l~e~~~~~R~-~---~G~~~~-~l~~~-~d~lv 252 (327)
T 3uc1_A 181 PMGRATSGVQGMRFNIDDRLLSLN-VV-REGTYLLVATSGGYAKRTAIEEYPVQGRG-G---KGVLTV-MYDRR-RGRLV 252 (327)
T ss_dssp CCCTTSBCEESSCCCTTCCEEEEE-EC-CTTCEEEEEETTSEEEEEEGGGSCBCCTT-S---CCEESS-CCCTT-TCSEE
T ss_pred cCCcCCCCeeeecCCCCCEEEEEE-EE-CCCCEEEEEeCCCcEEEEEHHHccccCcC-C---CcEEEE-EecCC-CCeEE
Confidence 111100000 01112222343332 22 34567777888999988877643211000 0 000000 11111 22344
Q ss_pred EEEeeeCCCEEEEEcCCCcEEEEeCCc
Q 001391 585 CLDASFEDEVLFCGDLRGNLVLFPLLR 611 (1088)
Q Consensus 585 ~l~~spdg~~LatGs~dg~I~Iw~~~~ 611 (1088)
.+....++..|+..+.+|.+.-++.+.
T Consensus 253 ~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 253 GALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 444444566777888999988888764
Done!